Query 047765
Match_columns 72
No_of_seqs 112 out of 440
Neff 5.1
Searched_HMMs 29240
Date Mon Mar 25 04:25:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047765.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047765hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3e2u_E CAP-Gly domain-containi 63.8 1.6 5.4E-05 23.6 0.1 26 1-26 3-28 (42)
2 2e72_A POGO transposable eleme 43.0 22 0.00076 19.5 2.6 14 16-29 10-23 (49)
3 1zfo_A LAsp-1; LIM domain, zin 41.0 12 0.00042 17.9 1.3 13 17-29 2-14 (31)
4 2lo3_A SAGA-associated factor 38.6 10 0.00035 20.5 0.8 18 12-29 11-28 (44)
5 1x62_A C-terminal LIM domain p 38.3 33 0.0011 18.7 3.0 15 15-29 12-26 (79)
6 3mhs_E SAGA-associated factor 32.0 16 0.00055 22.6 1.0 20 10-29 67-86 (96)
7 1wg2_A Zinc finger (AN1-like) 30.3 41 0.0014 19.2 2.5 26 10-35 7-36 (64)
8 2k1p_A Zinc finger RAN-binding 29.8 26 0.0009 17.1 1.4 13 16-28 18-30 (33)
9 2lk0_A RNA-binding protein 5; 27.4 30 0.001 16.8 1.4 13 16-28 17-29 (32)
10 2ot9_A Hypothetical protein; Y 25.3 30 0.001 23.5 1.5 26 44-70 24-49 (180)
11 1x64_A Alpha-actinin-2 associa 24.8 82 0.0028 17.4 3.2 16 14-29 21-36 (89)
12 2g3w_A YAEQ protein, hypotheti 23.4 34 0.0012 23.2 1.5 26 44-70 24-49 (182)
13 3c0u_A Uncharacterized protein 23.2 35 0.0012 23.2 1.5 26 44-70 26-51 (183)
14 1n0z_A ZNF265; zinc finger, RN 22.5 42 0.0014 17.5 1.5 13 16-28 28-40 (45)
15 2x5c_A Hypothetical protein OR 21.3 56 0.0019 20.6 2.1 36 17-58 51-86 (131)
16 2pzo_E CAP-Gly domain-containi 20.4 23 0.0008 18.9 0.2 19 8-26 10-28 (42)
No 1
>3e2u_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskelet associated protein, P150glued; 2.60A {Homo sapiens}
Probab=63.83 E-value=1.6 Score=23.57 Aligned_cols=26 Identities=27% Similarity=0.552 Sum_probs=7.7
Q ss_pred CCCCCCCCCCCCCCCcCCcCCCCCCC
Q 047765 1 MESDDPSSRSNSPPPQRRRICGNCDR 26 (72)
Q Consensus 1 ~~~~~~~~~~~~~~~~~r~~C~~C~~ 26 (72)
|+.+-|-+..+-...+.|++|..|..
T Consensus 3 m~dspP~s~~h~~~~~eRpYCe~CEV 28 (42)
T 3e2u_E 3 MSEDPPHSTHHGSRGEERPYCEICEM 28 (42)
T ss_dssp -----------------CCEETTTTE
T ss_pred cCCCCCcccccCCCcccCccccccee
Confidence 34444566666666677999999963
No 2
>2e72_A POGO transposable element with ZNF domain; zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=42.98 E-value=22 Score=19.53 Aligned_cols=14 Identities=29% Similarity=0.698 Sum_probs=11.5
Q ss_pred cCCcCCCCCCCCCC
Q 047765 16 QRRRICGNCDRPQA 29 (72)
Q Consensus 16 ~~r~~C~~C~~p~~ 29 (72)
.++..|++|+...+
T Consensus 10 ~~~~~CPrCn~~f~ 23 (49)
T 2e72_A 10 GGRKICPRCNAQFR 23 (49)
T ss_dssp SSCCCCTTTCCCCS
T ss_pred CCceeCCccccccc
Confidence 37899999998765
No 3
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=41.02 E-value=12 Score=17.86 Aligned_cols=13 Identities=15% Similarity=0.391 Sum_probs=10.0
Q ss_pred CCcCCCCCCCCCC
Q 047765 17 RRRICGNCDRPQA 29 (72)
Q Consensus 17 ~r~~C~~C~~p~~ 29 (72)
+.+.|++|+.+.-
T Consensus 2 m~~~C~~C~k~Vy 14 (31)
T 1zfo_A 2 MNPNCARCGKIVY 14 (31)
T ss_dssp CCCBCSSSCSBCC
T ss_pred CCCcCCccCCEEe
Confidence 5678999998753
No 4
>2lo3_A SAGA-associated factor 73; zinc-finger, deubiquitination, transcription factor, SAGA CO transcription; NMR {Saccharomyces cerevisiae}
Probab=38.64 E-value=10 Score=20.48 Aligned_cols=18 Identities=33% Similarity=0.815 Sum_probs=13.8
Q ss_pred CCCCcCCcCCCCCCCCCC
Q 047765 12 SPPPQRRRICGNCDRPQA 29 (72)
Q Consensus 12 ~~~~~~r~~C~~C~~p~~ 29 (72)
.+++.....|..|++|..
T Consensus 11 le~~~~YRvC~~CgkPi~ 28 (44)
T 2lo3_A 11 LDKPIQYRVCEKCGKPLA 28 (44)
T ss_dssp CCCCCCEEECTTTCCEEE
T ss_pred cCccccchhhcccCCcch
Confidence 345666788999999964
No 5
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=38.30 E-value=33 Score=18.74 Aligned_cols=15 Identities=20% Similarity=0.567 Sum_probs=11.9
Q ss_pred CcCCcCCCCCCCCCC
Q 047765 15 PQRRRICGNCDRPQA 29 (72)
Q Consensus 15 ~~~r~~C~~C~~p~~ 29 (72)
.+...+|.+|+.+..
T Consensus 12 ~~~~~~C~~C~~~I~ 26 (79)
T 1x62_A 12 AQKLPMCDKCGTGIV 26 (79)
T ss_dssp CCCCCCCSSSCCCCC
T ss_pred CCCCCccccCCCCcc
Confidence 355689999999865
No 6
>3mhs_E SAGA-associated factor 73; multi-protein complex, hydrolase-transcription regulator-Pro binding complex, acetylation, cytoplasm; 1.89A {Saccharomyces cerevisiae} PDB: 3mhh_E 4fip_D 4fjc_D 4fk5_E 3m99_D
Probab=32.04 E-value=16 Score=22.64 Aligned_cols=20 Identities=30% Similarity=0.727 Sum_probs=15.2
Q ss_pred CCCCCCcCCcCCCCCCCCCC
Q 047765 10 SNSPPPQRRRICGNCDRPQA 29 (72)
Q Consensus 10 ~~~~~~~~r~~C~~C~~p~~ 29 (72)
++.+.+.....|..||+|..
T Consensus 67 ~~Ld~~~~YRvCn~CGkPI~ 86 (96)
T 3mhs_E 67 DPLDKPIQYRVCEKCGKPLA 86 (96)
T ss_dssp STTSSSCCCEEETTTCCEEC
T ss_pred ccCCCcccchhhhccCCcee
Confidence 44555666788999999976
No 7
>1wg2_A Zinc finger (AN1-like) family protein; riken structural genomics/proteomics initiative, RSGI, structural genomics, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.80.1.1
Probab=30.27 E-value=41 Score=19.23 Aligned_cols=26 Identities=23% Similarity=0.567 Sum_probs=16.5
Q ss_pred CCCCCCcCCcCCCCCCCCCC----ceeeCC
Q 047765 10 SNSPPPQRRRICGNCDRPQA----VCLCHV 35 (72)
Q Consensus 10 ~~~~~~~~r~~C~~C~~p~~----~ClC~~ 35 (72)
+..++.....+|..|++... .|-|..
T Consensus 7 ~~~~~~~~~~rC~~C~kkvgl~~f~CrCg~ 36 (64)
T 1wg2_A 7 GPSRPVRPNNRCFSCNKKVGVMGFKCKCGS 36 (64)
T ss_dssp CSSCCSCCSCSCTTTCCCCTTSCEECTTSC
T ss_pred CCCCCCCcCCcChhhCCcccccCeEeecCC
Confidence 33344455689999998643 376654
No 8
>2k1p_A Zinc finger RAN-binding domain-containing protein 2; ZNF265, RNA binding, ranbp2, RBZ, ZIS, alternative splicing, metal-binding, mRNA processing; NMR {Homo sapiens} PDB: 3g9y_A
Probab=29.85 E-value=26 Score=17.08 Aligned_cols=13 Identities=38% Similarity=0.989 Sum_probs=10.4
Q ss_pred cCCcCCCCCCCCC
Q 047765 16 QRRRICGNCDRPQ 28 (72)
Q Consensus 16 ~~r~~C~~C~~p~ 28 (72)
.+|..|.+|+.|.
T Consensus 18 a~R~~C~~C~~pk 30 (33)
T 2k1p_A 18 ARRSECNMCNTPK 30 (33)
T ss_dssp TTCSBCSSSCCBT
T ss_pred cccccccccCCcC
Confidence 4678899999875
No 9
>2lk0_A RNA-binding protein 5; zinc finger; NMR {Homo sapiens} PDB: 2lk1_A*
Probab=27.36 E-value=30 Score=16.76 Aligned_cols=13 Identities=23% Similarity=0.590 Sum_probs=10.4
Q ss_pred cCCcCCCCCCCCC
Q 047765 16 QRRRICGNCDRPQ 28 (72)
Q Consensus 16 ~~r~~C~~C~~p~ 28 (72)
.+|..|.+|+.|.
T Consensus 17 a~r~~C~~C~~pr 29 (32)
T 2lk0_A 17 RKRLKCFRCGADK 29 (32)
T ss_dssp TTCCBCTTTCCBT
T ss_pred hhcceecCCCCcC
Confidence 4678899999875
No 10
>2ot9_A Hypothetical protein; YAEQ protein, PSI-2, protein structure initiative, MCSG, structural genomics, midwest center for S genomics; HET: SRT; 1.97A {Pseudomonas syringae PV} SCOP: c.52.1.33
Probab=25.33 E-value=30 Score=23.46 Aligned_cols=26 Identities=31% Similarity=0.553 Sum_probs=18.3
Q ss_pred cceEEEEeCCCcccCCCChHHHHHhhh
Q 047765 44 NTRILIIHHPHEAHHKLNTARLLTKSV 70 (72)
Q Consensus 44 ~~~v~ILqHp~E~~r~~nT~rLl~~~L 70 (72)
...+.|=+||+|-.-.. -+|||+-+|
T Consensus 24 ~~~LTlArHPSET~eRm-M~RlLAfal 49 (180)
T 2ot9_A 24 SVKQTIARHPSETEERM-TVRLLAYAF 49 (180)
T ss_dssp EEEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred chheeeecCCCccHHHH-HHHHHHHHh
Confidence 45789999999984322 466776655
No 11
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=24.78 E-value=82 Score=17.45 Aligned_cols=16 Identities=25% Similarity=0.598 Sum_probs=11.9
Q ss_pred CCcCCcCCCCCCCCCC
Q 047765 14 PPQRRRICGNCDRPQA 29 (72)
Q Consensus 14 ~~~~r~~C~~C~~p~~ 29 (72)
......+|.+|+.+..
T Consensus 21 ~~~~~~~C~~C~~~I~ 36 (89)
T 1x64_A 21 SAQRMPLCDKCGSGIV 36 (89)
T ss_dssp CCCSCCBCTTTCCBCC
T ss_pred CCCcCCCcccCCCEec
Confidence 3355688999998765
No 12
>2g3w_A YAEQ protein, hypothetical protein XAC2396; xanthomonas axonopodis PV citri, unknown funct; HET: MSE; 1.90A {Xanthomonas axonopodis PV} SCOP: c.52.1.33
Probab=23.38 E-value=34 Score=23.20 Aligned_cols=26 Identities=31% Similarity=0.584 Sum_probs=18.1
Q ss_pred cceEEEEeCCCcccCCCChHHHHHhhh
Q 047765 44 NTRILIIHHPHEAHHKLNTARLLTKSV 70 (72)
Q Consensus 44 ~~~v~ILqHp~E~~r~~nT~rLl~~~L 70 (72)
...+.|=|||+|-.-.. -+|||+-+|
T Consensus 24 ~~~LTlArHPSET~eRm-M~RlLAfal 49 (182)
T 2g3w_A 24 NHSLTLAQHPSETDERL-MVRLLAFAL 49 (182)
T ss_dssp EEEEEEEECTTCCHHHH-HHHHHHHHH
T ss_pred chheeeecCCCccHHHH-HHHHHHHHh
Confidence 45799999999984322 466666655
No 13
>3c0u_A Uncharacterized protein YAEQ; PSI-2, protein structure initiative, center for structural genomics, MCSG, structural genomics, function; 2.70A {Escherichia coli}
Probab=23.25 E-value=35 Score=23.20 Aligned_cols=26 Identities=23% Similarity=0.457 Sum_probs=18.1
Q ss_pred cceEEEEeCCCcccCCCChHHHHHhhh
Q 047765 44 NTRILIIHHPHEAHHKLNTARLLTKSV 70 (72)
Q Consensus 44 ~~~v~ILqHp~E~~r~~nT~rLl~~~L 70 (72)
...+.|=+||+|-.-.. -+|||+-+|
T Consensus 26 ~~~LTlArHPSET~eRm-M~RlLAfal 51 (183)
T 3c0u_A 26 DASLTLARHPSETQERM-MLRLLAWLK 51 (183)
T ss_dssp EEEEEEEECTTSCHHHH-HHHHHHHHH
T ss_pred chheeeecCCCccHHHH-HHHHHHHHh
Confidence 45789999999984322 466666655
No 14
>1n0z_A ZNF265; zinc finger, RNA splicing, transcription; NMR {Homo sapiens} SCOP: g.41.11.1
Probab=22.53 E-value=42 Score=17.51 Aligned_cols=13 Identities=38% Similarity=0.933 Sum_probs=10.1
Q ss_pred cCCcCCCCCCCCC
Q 047765 16 QRRRICGNCDRPQ 28 (72)
Q Consensus 16 ~~r~~C~~C~~p~ 28 (72)
.+|..|.+|+.|.
T Consensus 28 a~R~~C~~C~~pr 40 (45)
T 1n0z_A 28 ARRTSCDRCGREK 40 (45)
T ss_dssp SSCSBCSSSCCBC
T ss_pred cccccccccCCcC
Confidence 5678888888875
No 15
>2x5c_A Hypothetical protein ORF131; viral protein; HET: GOL; 1.80A {Pyrobaculum spherical virus}
Probab=21.28 E-value=56 Score=20.62 Aligned_cols=36 Identities=22% Similarity=0.504 Sum_probs=26.1
Q ss_pred CCcCCCCCCCCCCceeeCCcCCCCCCCcceEEEEeCCCcccC
Q 047765 17 RRRICGNCDRPQAVCLCHVLPTTPITTNTRILIIHHPHEAHH 58 (72)
Q Consensus 17 ~r~~C~~C~~p~~~ClC~~ip~~~l~~~~~v~ILqHp~E~~r 58 (72)
+-..|++|+---++=|- ...+..+.+++.||.--.|
T Consensus 51 mhakcprcgaegsvsiv------etkngykylvirhpdggth 86 (131)
T 2x5c_A 51 MHAKCPRCGAEGSVSIV------ETKNGYKYLVIRHPDGGTH 86 (131)
T ss_dssp CEEECTTTSCEEEEEEE------ECTTSCEEEEEECTTSCEE
T ss_pred eeccCCCCCCccceEEE------EecCCcEEEEEECCCCCcc
Confidence 34679999987775432 3467789999999986543
No 16
>2pzo_E CAP-Gly domain-containing linker protein 1; structural protein microtubule binding, dynactin, cytoskeleton associated protein, P150glued; 2.60A {Homo sapiens} PDB: 3e2u_E
Probab=20.40 E-value=23 Score=18.86 Aligned_cols=19 Identities=21% Similarity=0.473 Sum_probs=6.7
Q ss_pred CCCCCCCCcCCcCCCCCCC
Q 047765 8 SRSNSPPPQRRRICGNCDR 26 (72)
Q Consensus 8 ~~~~~~~~~~r~~C~~C~~ 26 (72)
|.---.....|++|..|..
T Consensus 10 S~~Hg~~~~eRpYCd~CEv 28 (42)
T 2pzo_E 10 STHHGSRGEERPYCEICEM 28 (42)
T ss_dssp -----------CEETTTTE
T ss_pred ccccCCCccCCcccccccc
Confidence 3333344577899999963
Done!