Query 047765
Match_columns 72
No_of_seqs 112 out of 440
Neff 5.1
Searched_HMMs 13730
Date Mon Mar 25 04:25:53 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047765.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/047765hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2cu8a1 g.39.1.3 (A:8-37) Cyst 54.2 2.6 0.00019 20.0 1.2 12 17-28 1-12 (30)
2 d1b8ta3 g.39.1.3 (A:101-143) C 46.1 6.5 0.00047 19.5 2.1 16 13-28 10-25 (43)
3 d1x64a1 g.39.1.3 (A:8-52) PDZ 30.4 31 0.0023 17.3 3.2 20 8-27 8-27 (45)
4 d2k4xa1 g.41.8.8 (A:1-55) Ribo 28.4 17 0.0013 19.0 2.0 14 13-26 13-26 (55)
5 d1wfha_ g.80.1.1 (A:) Zinc fin 27.3 29 0.0021 18.5 2.9 19 11-29 8-26 (64)
6 d2dara2 g.39.1.3 (A:8-52) PDZ 25.0 17 0.0012 18.3 1.5 17 13-29 13-29 (45)
7 d1n0za_ g.41.11.1 (A:) Znf265, 24.4 18 0.0013 18.0 1.6 14 16-29 28-41 (45)
8 d1zfoa_ g.39.1.4 (A:) LASP-1 { 23.1 17 0.0013 16.8 1.2 10 18-27 2-11 (30)
9 d1ibia1 g.39.1.3 (A:117-144) C 22.1 12 0.0009 17.1 0.5 9 19-27 2-10 (28)
10 d1x62a2 g.39.1.3 (A:8-42) PDZ 21.6 27 0.0019 16.6 1.8 14 14-27 4-17 (35)
No 1
>d2cu8a1 g.39.1.3 (A:8-37) Cysteine-rich (intestinal) protein, CRP, CRIP {Human (Homo sapiens) [TaxId: 9606]}
Probab=54.19 E-value=2.6 Score=19.97 Aligned_cols=12 Identities=25% Similarity=0.656 Sum_probs=9.4
Q ss_pred CCcCCCCCCCCC
Q 047765 17 RRRICGNCDRPQ 28 (72)
Q Consensus 17 ~r~~C~~C~~p~ 28 (72)
|...|++|+++.
T Consensus 1 M~~~CprC~K~V 12 (30)
T d2cu8a1 1 MASKCPKCDKTV 12 (30)
T ss_dssp CCCBCTTTCCBC
T ss_pred CCCcCCCCCCce
Confidence 457899999874
No 2
>d1b8ta3 g.39.1.3 (A:101-143) Cysteine-rich (intestinal) protein, CRP, CRIP {Chicken (Gallus gallus) [TaxId: 9031]}
Probab=46.14 E-value=6.5 Score=19.54 Aligned_cols=16 Identities=13% Similarity=0.262 Sum_probs=11.0
Q ss_pred CCCcCCcCCCCCCCCC
Q 047765 13 PPPQRRRICGNCDRPQ 28 (72)
Q Consensus 13 ~~~~~r~~C~~C~~p~ 28 (72)
......+.|..|++..
T Consensus 10 ~~~g~~~kC~~C~k~V 25 (43)
T d1b8ta3 10 QKVGGSDGCPRCGQAV 25 (43)
T ss_dssp CCCCCCEECTTTSCEE
T ss_pred cccCCCCcCccCCCEe
Confidence 3334458899999864
No 3
>d1x64a1 g.39.1.3 (A:8-52) PDZ and LIM domain protein 3, PDLIM3 {Mouse (Mus musculus) [TaxId: 10090]}
Probab=30.36 E-value=31 Score=17.28 Aligned_cols=20 Identities=20% Similarity=0.508 Sum_probs=14.6
Q ss_pred CCCCCCCCcCCcCCCCCCCC
Q 047765 8 SRSNSPPPQRRRICGNCDRP 27 (72)
Q Consensus 8 ~~~~~~~~~~r~~C~~C~~p 27 (72)
....+...|+-+.|.+|+--
T Consensus 8 ~~~~~~~~QkLP~CdkCg~G 27 (45)
T d1x64a1 8 VHGGAGSAQRMPLCDKCGSG 27 (45)
T ss_dssp CCCCCSCCCSCCBCTTTCCB
T ss_pred cCCCCCccccCccccccCCC
Confidence 34455566899999999853
No 4
>d2k4xa1 g.41.8.8 (A:1-55) Ribosomal protein S27ae {Thermoplasma acidophilum [TaxId: 2303]}
Probab=28.41 E-value=17 Score=19.00 Aligned_cols=14 Identities=21% Similarity=0.636 Sum_probs=9.4
Q ss_pred CCCcCCcCCCCCCC
Q 047765 13 PPPQRRRICGNCDR 26 (72)
Q Consensus 13 ~~~~~r~~C~~C~~ 26 (72)
+-...+..|++|+-
T Consensus 13 kv~r~~k~CP~CG~ 26 (55)
T d2k4xa1 13 KLVRKHRFCPRCGP 26 (55)
T ss_dssp CCCCSSCCCTTTTT
T ss_pred EEEEecCcCcCCCC
Confidence 34455678998864
No 5
>d1wfha_ g.80.1.1 (A:) Zinc finger A20 and AN1 domains containing protein At2g36320 {Thale cress (Arabidopsis thaliana) [TaxId: 3702]}
Probab=27.33 E-value=29 Score=18.50 Aligned_cols=19 Identities=32% Similarity=0.725 Sum_probs=13.0
Q ss_pred CCCCCcCCcCCCCCCCCCC
Q 047765 11 NSPPPQRRRICGNCDRPQA 29 (72)
Q Consensus 11 ~~~~~~~r~~C~~C~~p~~ 29 (72)
...++.+..+|..|.+-..
T Consensus 8 ~~~~~~k~~RC~~C~KKl~ 26 (64)
T d1wfha_ 8 QPSPPQRPNRCTVCRKRVG 26 (64)
T ss_dssp CCCCCSSCCCCTTTCCCCC
T ss_pred CCCCCCCCCcChhhCCCcc
Confidence 3344567789999986643
No 6
>d2dara2 g.39.1.3 (A:8-52) PDZ and LIM domain protein 5, Enigma {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.97 E-value=17 Score=18.33 Aligned_cols=17 Identities=24% Similarity=0.745 Sum_probs=12.9
Q ss_pred CCCcCCcCCCCCCCCCC
Q 047765 13 PPPQRRRICGNCDRPQA 29 (72)
Q Consensus 13 ~~~~~r~~C~~C~~p~~ 29 (72)
+...+.++|..|..|..
T Consensus 13 p~~~r~P~C~~C~~pI~ 29 (45)
T d2dara2 13 PAGKRTPMCAHCNQVIR 29 (45)
T ss_dssp CTTTCCCBBSSSCCBCC
T ss_pred CCCCCCeeccccCCccc
Confidence 34467799999999864
No 7
>d1n0za_ g.41.11.1 (A:) Znf265, first zinc-finger domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=24.43 E-value=18 Score=17.99 Aligned_cols=14 Identities=36% Similarity=0.881 Sum_probs=10.0
Q ss_pred cCCcCCCCCCCCCC
Q 047765 16 QRRRICGNCDRPQA 29 (72)
Q Consensus 16 ~~r~~C~~C~~p~~ 29 (72)
.+|..|.+|+.|..
T Consensus 28 a~R~~C~rC~~~r~ 41 (45)
T d1n0za_ 28 ARRTSCDRCGREKT 41 (45)
T ss_dssp SSCSBCSSSCCBCC
T ss_pred cccCcccCCCCcCC
Confidence 46778888887653
No 8
>d1zfoa_ g.39.1.4 (A:) LASP-1 {Pig (Sus scrofa) [TaxId: 9823]}
Probab=23.12 E-value=17 Score=16.83 Aligned_cols=10 Identities=20% Similarity=0.687 Sum_probs=7.5
Q ss_pred CcCCCCCCCC
Q 047765 18 RRICGNCDRP 27 (72)
Q Consensus 18 r~~C~~C~~p 27 (72)
.+.|.||++.
T Consensus 2 n~~CaRC~k~ 11 (30)
T d1zfoa_ 2 NPNCARCGKI 11 (30)
T ss_dssp CCBCSSSCSB
T ss_pred CCcccccCCc
Confidence 4668899875
No 9
>d1ibia1 g.39.1.3 (A:117-144) Cysteine-rich (intestinal) protein, CRP, CRIP {Japanese quail (Coturnix coturnix japonica), CRP2 [TaxId: 93934]}
Probab=22.06 E-value=12 Score=17.13 Aligned_cols=9 Identities=22% Similarity=0.822 Sum_probs=6.8
Q ss_pred cCCCCCCCC
Q 047765 19 RICGNCDRP 27 (72)
Q Consensus 19 ~~C~~C~~p 27 (72)
..|+||+..
T Consensus 2 d~CpRC~~~ 10 (28)
T d1ibia1 2 EKCSRCGDS 10 (28)
T ss_dssp EECTTTSSE
T ss_pred CcCcccchh
Confidence 479999864
No 10
>d1x62a2 g.39.1.3 (A:8-42) PDZ and LIM domain protein 1 Elfin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.64 E-value=27 Score=16.65 Aligned_cols=14 Identities=21% Similarity=0.629 Sum_probs=10.7
Q ss_pred CCcCCcCCCCCCCC
Q 047765 14 PPQRRRICGNCDRP 27 (72)
Q Consensus 14 ~~~~r~~C~~C~~p 27 (72)
..++-+.|.+|+--
T Consensus 4 ~~qklp~CdkCg~G 17 (35)
T d1x62a2 4 NAQKLPMCDKCGTG 17 (35)
T ss_dssp CCCCCCCCSSSCCC
T ss_pred ccccCccccccCCC
Confidence 35778899999854
Done!