Query 047766
Match_columns 118
No_of_seqs 114 out of 1013
Neff 6.8
Searched_HMMs 46136
Date Fri Mar 29 02:55:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047766.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047766hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN02386 superoxide dismutase 100.0 9.5E-41 2.1E-45 239.8 14.5 111 6-118 2-127 (152)
2 PLN02642 copper, zinc superoxi 100.0 1.8E-40 3.9E-45 240.5 14.3 112 5-118 7-133 (164)
3 cd00305 Cu-Zn_Superoxide_Dismu 100.0 9.7E-38 2.1E-42 222.1 14.5 111 6-118 1-126 (144)
4 KOG0441 Cu2+/Zn2+ superoxide d 100.0 7E-37 1.5E-41 218.2 12.3 113 6-118 2-129 (154)
5 PRK15388 Cu/Zn superoxide dism 100.0 3.9E-36 8.4E-41 220.1 14.3 109 8-118 28-158 (177)
6 PRK10290 superoxide dismutase; 100.0 7.6E-35 1.6E-39 212.8 14.0 108 8-118 24-155 (173)
7 PF00080 Sod_Cu: Copper/zinc s 100.0 1.1E-34 2.5E-39 204.8 12.0 109 8-116 1-125 (142)
8 PLN02957 copper, zinc superoxi 100.0 1.3E-32 2.9E-37 209.5 12.8 103 6-116 81-195 (238)
9 COG2032 SodC Cu/Zn superoxide 100.0 9.9E-32 2.2E-36 196.1 12.1 109 7-117 30-160 (179)
10 KOG4656 Copper chaperone for s 100.0 5E-29 1.1E-33 185.5 6.6 102 9-117 85-198 (247)
11 PF07452 CHRD: CHRD domain; I 87.0 5 0.00011 26.7 7.1 46 9-54 4-55 (119)
12 smart00754 CHRD A domain in th 80.3 14 0.00031 24.7 7.1 38 17-55 18-55 (118)
13 PF07731 Cu-oxidase_2: Multico 44.0 27 0.00058 23.4 2.8 23 34-56 42-64 (138)
14 PF07495 Y_Y_Y: Y_Y_Y domain; 42.2 22 0.00047 20.7 1.9 19 37-55 30-48 (66)
15 PF09912 DUF2141: Uncharacteri 31.3 49 0.0011 22.2 2.4 21 34-54 41-61 (112)
16 PF08896 DUF1842: Domain of un 30.6 1.7E+02 0.0037 20.0 5.0 26 16-42 30-55 (114)
17 PF05738 Cna_B: Cna protein B- 20.9 1.7E+02 0.0036 17.0 3.3 25 24-55 20-44 (70)
18 PF10698 DUF2505: Protein of u 20.3 1.9E+02 0.0041 20.2 3.9 27 14-40 99-125 (159)
No 1
>PLN02386 superoxide dismutase [Cu-Zn]
Probab=100.00 E-value=9.5e-41 Score=239.81 Aligned_cols=111 Identities=56% Similarity=1.020 Sum_probs=102.9
Q ss_pred eeEEEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCCCCCccCCCcCCCCCCCCCCCCCCCC
Q 047766 6 VNAIAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRHECNSAGSHFDPHNMSHGGKEDEHRH 85 (118)
Q Consensus 6 ~~Ava~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~~c~saGgh~np~~~~h~~p~~~~~~ 85 (118)
.+|+|+|++ .+.|+|+|+|+|..++ .++|+++++||+||+|+|||||+|||+++|.|||+||||.++.|+.|.+..+|
T Consensus 2 ~~a~a~~~~-~~~v~G~v~f~q~~~g-~v~i~~~~~GL~pG~hg~HIHe~Gd~~~g~~SaGgHfnP~~~~Hg~~~~~~~H 79 (152)
T PLN02386 2 VKAVAVLNS-SEGVKGTIFFTQEGDG-PTTVTGSLSGLKPGLHGFHVHALGDTTNGCMSTGPHFNPAGKEHGAPEDENRH 79 (152)
T ss_pred ceEEEEEcC-CCCCEEEEEEEEcCCC-CEEEEEEEeCCCCCceeEEEeCCCCCCCCcccccCccCCCCCCCCCCCcccCc
Confidence 689999998 4569999999998764 69999999999999999999999999999999999999999999999998999
Q ss_pred cCcccceEE---------------eecCCCCcccceEEEecCCCCCCC
Q 047766 86 VGDLGNLFG---------------DVYGPDSIIGRAIVIHKDQDDFGR 118 (118)
Q Consensus 86 ~GDLgnl~~---------------~L~g~~siiGRSiVIH~~~Dd~g~ 118 (118)
+||||||.+ +|.++++|+|||||||+++|||++
T Consensus 80 ~GDLgNi~~~~~G~a~~~~~~~~~~L~g~~~i~GrslVIHa~~DD~~~ 127 (152)
T PLN02386 80 AGDLGNVTVGDDGTATFTIVDKQIPLTGPNSIVGRAVVVHADPDDLGK 127 (152)
T ss_pred cccccCEEECCCCeEEEEEECCceEeCCCCccCCcEEEEEccCCCcCC
Confidence 999999987 456789999999999999999963
No 2
>PLN02642 copper, zinc superoxide dismutase
Probab=100.00 E-value=1.8e-40 Score=240.55 Aligned_cols=112 Identities=46% Similarity=0.853 Sum_probs=103.6
Q ss_pred ceeEEEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCCCCCccCCCcCCCCCCCCCCCCCCC
Q 047766 5 KVNAIAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRHECNSAGSHFDPHNMSHGGKEDEHR 84 (118)
Q Consensus 5 ~~~Ava~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~~c~saGgh~np~~~~h~~p~~~~~ 84 (118)
..+|+|+|++ .+.++|+|+|+|...+ .|+|+++|+||+||+|+|||||+|||+++|.|||+||||.++.|+.|.+..+
T Consensus 7 ~~~A~a~~~g-~~~v~G~v~f~q~~~g-~v~I~~~v~GL~pG~HG~HIHe~Gd~~~g~~SaGgHfNP~~~~HG~~~~~~r 84 (164)
T PLN02642 7 NLRAVALIAG-DNNVRGCLQFVQDIFG-TTHVTGKISGLSPGFHGFHIHSFGDTTNGCISTGPHFNPLNRVHGPPNEEER 84 (164)
T ss_pred CeeEEEEEcC-CCCcEEEEEEEECCCC-cEEEEEEEcCCCCCceeEEEcCCCcCCCCcccccCcccCCCCcCCCCCcCCC
Confidence 4689999998 5679999999998764 6999999999999999999999999999999999999999999999999999
Q ss_pred CcCcccceEE---------------eecCCCCcccceEEEecCCCCCCC
Q 047766 85 HVGDLGNLFG---------------DVYGPDSIIGRAIVIHKDQDDFGR 118 (118)
Q Consensus 85 ~~GDLgnl~~---------------~L~g~~siiGRSiVIH~~~Dd~g~ 118 (118)
|+||||||.+ +|.+.++|+|||||||+++|||++
T Consensus 85 H~GDLgNi~a~~~G~a~~~~~~~~i~L~g~~~iiGRalVVHa~~DD~~~ 133 (164)
T PLN02642 85 HAGDLGNILAGSDGVAEILIKDKHIPLSGQYSILGRAVVVHADPDDLGK 133 (164)
T ss_pred cccccCCEEECCCCeEEEEEEcCceecCCCCCcCCcEEEEeccCCccCc
Confidence 9999999987 455789999999999999999974
No 3
>cd00305 Cu-Zn_Superoxide_Dismutase Copper/zinc superoxide dismutase (SOD). superoxide dismutases catalyse the conversion of superoxide radicals to molecular oxygen. Three evolutionarily distinct families of SODs are known, of which the copper/zinc-binding family is one. Defects in the human SOD1 gene causes familial amyotrophic lateral sclerosis (Lou Gehrig's disease). Cytoplasmic and periplasmic SODs exist as dimers, whereas chloroplastic and extracellular enzymes exist as tetramers. Structure supports independent functional evolution in prokaryotes (P-class) and eukaryotes (E-class) [PMID:.8176730].
Probab=100.00 E-value=9.7e-38 Score=222.09 Aligned_cols=111 Identities=48% Similarity=0.918 Sum_probs=102.0
Q ss_pred eeEEEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCCCCCccCCCcCCCCCCCCCCCCCCCC
Q 047766 6 VNAIAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRHECNSAGSHFDPHNMSHGGKEDEHRH 85 (118)
Q Consensus 6 ~~Ava~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~~c~saGgh~np~~~~h~~p~~~~~~ 85 (118)
.+|+|+|+++++.++|+|+|+|.+. .++|+++++||+||+|+|||||+|||+++|+|+|+||||.++.|+.|.+..+|
T Consensus 1 ~~a~~~l~~~~g~v~G~v~f~q~~~--~v~v~~~l~GL~pG~hg~HIHe~Gd~~~~~~saGgh~np~~~~hg~~~~~~~h 78 (144)
T cd00305 1 VSAVAVLKGPDGKVVGTVTFTQQSG--GVTITGELSGLTPGLHGFHIHEFGDCTNGCTSAGGHFNPFGKKHGGPNDEGRH 78 (144)
T ss_pred CcEEEEEECCCCceEEEEEEEECCC--CEEEEEEEECCCCCceeEEEEecCCCCCccccccCccCCCCCCCCCCCCCCCC
Confidence 3699999997788999999999986 49999999999999999999999999999999999999999999999989999
Q ss_pred cCcccceEE---------------eecCCCCcccceEEEecCCCCCCC
Q 047766 86 VGDLGNLFG---------------DVYGPDSIIGRAIVIHKDQDDFGR 118 (118)
Q Consensus 86 ~GDLgnl~~---------------~L~g~~siiGRSiVIH~~~Dd~g~ 118 (118)
+||||||.+ +|++..+++|||||||+.+|||++
T Consensus 79 ~GDLgni~~~~~G~~~~~~~~~~~~l~~~~~iiGrsivVH~~~Dd~~~ 126 (144)
T cd00305 79 AGDLGNIVADKDGVATVSVLDPLISLKGGNSIIGRSLVVHAGQDDLGK 126 (144)
T ss_pred CCcCCCEEECCCCeEEEEEEeCcEEcCCCCCcCCcEEEEecCCCCCCC
Confidence 999999988 233456999999999999999963
No 4
>KOG0441 consensus Cu2+/Zn2+ superoxide dismutase SOD1 [Inorganic ion transport and metabolism]
Probab=100.00 E-value=7e-37 Score=218.20 Aligned_cols=113 Identities=49% Similarity=0.871 Sum_probs=104.7
Q ss_pred eeEEEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCCCCCccCCCcCCCCCCCCCCCCCCCC
Q 047766 6 VNAIAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRHECNSAGSHFDPHNMSHGGKEDEHRH 85 (118)
Q Consensus 6 ~~Ava~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~~c~saGgh~np~~~~h~~p~~~~~~ 85 (118)
.+|+|+|++....|.|+|.|+|..++..+.|++.++||+||.|+||||+|||.+++|.|||+||||.++.|+.|.++.+|
T Consensus 2 ~~~~avl~g~~~~V~G~i~F~Q~~~~~~~~v~~~i~GL~pg~hgfHvHqfGD~t~GC~SaGphFNp~~~~hg~p~~~~rH 81 (154)
T KOG0441|consen 2 AQAVAVLEGDEIQVIGVITFEQFLPGEPLRVSGEVTGLPPGKHGFHVHQFGDNTNGCKSAGPHFNPNKKTHGGPVDEVRH 81 (154)
T ss_pred cceEEEEecCCCCceeEEEEEEcCCCCcEEEEEEEecCCCceeeEEEEeccCCCCChhcCCCCCCCcccCCCCccccccc
Confidence 47999999953389999999996555589999999999999999999999999999999999999999999999999999
Q ss_pred cCcccceEE---------------eecCCCCcccceEEEecCCCCCCC
Q 047766 86 VGDLGNLFG---------------DVYGPDSIIGRAIVIHKDQDDFGR 118 (118)
Q Consensus 86 ~GDLgnl~~---------------~L~g~~siiGRSiVIH~~~Dd~g~ 118 (118)
.||||||.+ +|+++++|+|||+|||+..||+|+
T Consensus 82 ~gdlGnv~~~~~G~~~~~~~d~~i~l~g~~sivgrs~vvHa~~ddLg~ 129 (154)
T KOG0441|consen 82 VGDLGNVDAKDDGVISRVFGDSVITLSGPNSIVGRSVVVHAGEDDLGK 129 (154)
T ss_pred cccccccccCCCceEEEEEccceEEEeeccccceeEEEEeccCccccC
Confidence 999999876 567899999999999999999986
No 5
>PRK15388 Cu/Zn superoxide dismutase; Provisional
Probab=100.00 E-value=3.9e-36 Score=220.06 Aligned_cols=109 Identities=29% Similarity=0.497 Sum_probs=93.6
Q ss_pred EEEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCC----C----CCccCCCcCCCCC-CCCC
Q 047766 8 AIAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRH----E----CNSAGSHFDPHNM-SHGG 78 (118)
Q Consensus 8 Ava~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~----~----c~saGgh~np~~~-~h~~ 78 (118)
|...+...+++++|+++|+|...+ ++|+++++||+||+|+|||||+|||+. + |.|||+||||+++ .|+.
T Consensus 28 ~~~~~~~~~g~~~G~v~f~~~~~g--v~I~~~l~GL~pG~HGfHIHe~GdC~~~~~~G~~~~~~SAGgHfNP~~~~~Hg~ 105 (177)
T PRK15388 28 MNDALSSGTGENIGEITVSETPYG--LLFTPHLNGLTPGIHGFHVHTNPSCMPGMKDGKEVPALMAGGHLDPEKTGKHLG 105 (177)
T ss_pred EEEeecCCCCceEEEEEEEEcCCc--EEEEEEEcCCCCcceEEEEccCCCccCcccCCCcccccccCCCcCCCCCCCCCC
Confidence 333344446899999999999765 999999999999999999999999973 2 8999999999987 7888
Q ss_pred CCCCCCCcCcccceEE-------------eecCCCCcccceEEEecCCCCCCC
Q 047766 79 KEDEHRHVGDLGNLFG-------------DVYGPDSIIGRAIVIHKDQDDFGR 118 (118)
Q Consensus 79 p~~~~~~~GDLgnl~~-------------~L~g~~siiGRSiVIH~~~Dd~g~ 118 (118)
|.+..+|+||||||++ .+...++|+|||||||+++|||++
T Consensus 106 p~~~~~H~GDLpNi~a~~dG~a~~~~~~~~~~~~~~i~GralVIHa~~DD~~~ 158 (177)
T PRK15388 106 PYNDKGHLGDLPGLVVNADGTATYPLLAPRLKSLSELKGHSLMIHKGGDNYSD 158 (177)
T ss_pred CCCCCCCcCcCcCEEECCCccEEEEEEeCCcccCcccCCcEEEEECCCCCCCC
Confidence 9888899999999998 122478999999999999999973
No 6
>PRK10290 superoxide dismutase; Provisional
Probab=100.00 E-value=7.6e-35 Score=212.80 Aligned_cols=108 Identities=31% Similarity=0.555 Sum_probs=92.0
Q ss_pred EEEEEeCC--CCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCC----C----CCccCCCcCCCCC-CC
Q 047766 8 AIAVITGR--EGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRH----E----CNSAGSHFDPHNM-SH 76 (118)
Q Consensus 8 Ava~l~~~--~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~----~----c~saGgh~np~~~-~h 76 (118)
+.+.+... .+++.|+++|+|.+.+ |+|+++++||+||+|+|||||+|||+. + |.|||+||||.++ .|
T Consensus 24 ~~~~~~~~~~~g~~~G~v~f~~~~~g--v~i~~~l~GL~pG~HGfHIHe~Gdc~~~~~~G~~~~~~sAGgHfNP~~~~~h 101 (173)
T PRK10290 24 VEMNLVTSQGVGQSIGSVTITETDKG--LEFSPDLKALPPGEHGFHIHAKGSCQPATKDGKASAAEAAGGHLDPQNTGKH 101 (173)
T ss_pred eEEEEeccCCCCceEEEEEEEEcCCc--EEEEEEEcCCCCCceEEEEeCCCccCCcccCCCcccccccCCccCCCCCcCC
Confidence 44444433 5899999999999765 999999999999999999999999983 2 8999999999988 78
Q ss_pred CCCCCCCCCcCcccceEE-------------eecCCCCcccceEEEecCCCCCCC
Q 047766 77 GGKEDEHRHVGDLGNLFG-------------DVYGPDSIIGRAIVIHKDQDDFGR 118 (118)
Q Consensus 77 ~~p~~~~~~~GDLgnl~~-------------~L~g~~siiGRSiVIH~~~Dd~g~ 118 (118)
+.|.. .+|+||||||++ .|.+.++|+|||||||+++|||++
T Consensus 102 g~p~~-~~H~GDL~ni~a~~dG~a~~~~~~~~~~~~~~i~GralVIH~~~DD~~~ 155 (173)
T PRK10290 102 EGPEG-AGHLGDLPALVVNNDGKATDPVIAPRLKSLDEVKDKALMVHVGGDNMSD 155 (173)
T ss_pred CCCCC-CCCcCcccCEEECCCeeEEEEEEeCCccCccccCCcEEEEECCCCCCCC
Confidence 88864 689999999998 123578999999999999999973
No 7
>PF00080 Sod_Cu: Copper/zinc superoxide dismutase (SODC); InterPro: IPR001424 Superoxide dismutases are ubiquitous metalloproteins that prevent damage by oxygen-mediated free radicals by catalysing the dismutation of superoxide into molecular oxygen and hydrogen peroxide []. Superoxide is a normal by-product of aerobic respiration and is produced by a number of reactions, including oxidative phosphorylation and photosynthesis. The dismutase enzymes have a very high catalytic efficiency due to the attraction of superoxide to the ions bound at the active site [, ]. There are three forms of superoxide dismutase, depending on the metal cofactor: Cu/Zn (which binds both copper and zinc), Fe and Mn types. The Fe and Mn forms are similar in their primary, secondary and tertiary structures, but are distinct from the Cu/Zn form []. Prokaryotes and protists contain Mn, Fe or both types, while most eukaryotic organisms utilise the Cu/Zn type.; GO: 0046872 metal ion binding, 0006801 superoxide metabolic process, 0055114 oxidation-reduction process; PDB: 2K4W_A 2APS_B 2WWN_B 2WWO_B 1ESO_A 2AQM_A 3F7L_A 3F7K_A 2E47_A 2E46_A ....
Probab=100.00 E-value=1.1e-34 Score=204.81 Aligned_cols=109 Identities=48% Similarity=0.918 Sum_probs=99.8
Q ss_pred EEEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCC-CCCCCccCCCcCCCCCCCCCCCCCCCCc
Q 047766 8 AIAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDT-RHECNSAGSHFDPHNMSHGGKEDEHRHV 86 (118)
Q Consensus 8 Ava~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~-~~~c~saGgh~np~~~~h~~p~~~~~~~ 86 (118)
|+|+|+++.+.|+|+|+|+|..+...+.|+++++||++|.|+|||||+|+| +++|.|+|+||||.++.|+.|....|++
T Consensus 1 a~a~l~~~~~~v~G~v~f~q~~~~~~~~v~~~~~GL~~g~~~~hIH~~g~~~~~~c~s~G~h~np~~~~~~~~~~~~~~~ 80 (142)
T PF00080_consen 1 AVAVLKGAGGKVKGTVTFTQVSDGDGVQVTVSLNGLPPGQHGYHIHENGDCSSNNCSSAGGHYNPTNVPHGGPSADNCHA 80 (142)
T ss_dssp EEEEEBETSSSEEEEEEEEEETTTTEEEEEEEEESSSSEEEEEEEESSSTCSTTTTGGG-SBCETTTSSSSSTTSSSSCT
T ss_pred CEEEEeCCCCCeEEEEEEEEeCCCCCEEEEEEEECCCCCCceEEEEeccccccccccccceecCccccccCCcccccccc
Confidence 899999877899999999999976569999999999999999999999999 7799999999999999999997778999
Q ss_pred CcccceEE---------------eecCCCCcccceEEEecCCCCC
Q 047766 87 GDLGNLFG---------------DVYGPDSIIGRAIVIHKDQDDF 116 (118)
Q Consensus 87 GDLgnl~~---------------~L~g~~siiGRSiVIH~~~Dd~ 116 (118)
|||+++++ +|++.++|+|||||||+.+|||
T Consensus 81 GDL~~~~~~~~G~~~~~~~~~~l~l~g~~siiGRSiVIH~~~~d~ 125 (142)
T PF00080_consen 81 GDLGNKYVDADGSASFTFTDSNLSLSGPNSIIGRSIVIHSGPDDF 125 (142)
T ss_dssp TEEEEEEESTTSEEEEEEEESSSBSSSTTBHTTSEEEEESSSSTT
T ss_pred ccccccccccCCceEEEEEeeeEeccCCccccCCEEEEEeCCCCc
Confidence 99999877 3567779999999999999987
No 8
>PLN02957 copper, zinc superoxide dismutase
Probab=100.00 E-value=1.3e-32 Score=209.52 Aligned_cols=103 Identities=25% Similarity=0.429 Sum_probs=92.1
Q ss_pred eeEEEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCCCCCccCCCcCCCCCCCCCCCCCCCC
Q 047766 6 VNAIAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRHECNSAGSHFDPHNMSHGGKEDEHRH 85 (118)
Q Consensus 6 ~~Ava~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~~c~saGgh~np~~~~h~~p~~~~~~ 85 (118)
.+|+|.+++ ..|+|+|+|+|.+.+ .++|+++++||+||.|+|||||+|||+++|.|||+||||.++.|+ .+|
T Consensus 81 ~~av~~~~g--~~v~G~v~~~~~~~~-~v~i~~~~~GL~pg~hg~hiHe~Gd~~~~~~saG~hfnp~~~~h~-----~~h 152 (238)
T PLN02957 81 SAAVAEFKG--PDIFGVVRFAQVSME-LARIEAAFSGLSPGTHGWSINEYGDLTRGAASTGKVYNPSDDDTD-----EEP 152 (238)
T ss_pred ceEEEEecC--CceEEEEEEEEcCCC-CEEEEEEEcCCCCCcEEEEEcCCCCCCCCccccCCCCCCccCCCC-----CCC
Confidence 468999987 369999999998764 699999999999999999999999999999999999999999997 589
Q ss_pred cCcccceEE------ee------cCCCCcccceEEEecCCCCC
Q 047766 86 VGDLGNLFG------DV------YGPDSIIGRAIVIHKDQDDF 116 (118)
Q Consensus 86 ~GDLgnl~~------~L------~g~~siiGRSiVIH~~~Dd~ 116 (118)
+||||||.+ .+ +.+++|+|||||||+++|+.
T Consensus 153 ~GDLgni~~~~~G~a~~~~~~~~~~l~~iiGrs~vih~~~D~~ 195 (238)
T PLN02957 153 LGDLGTLEADENGEATFSGTKEKLKVWDLIGRSLAVYATADKS 195 (238)
T ss_pred CCccCCEEeCCCceEEEEEECCCcCccccCCcEEEEEeCCCCC
Confidence 999999988 11 35689999999999999974
No 9
>COG2032 SodC Cu/Zn superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.97 E-value=9.9e-32 Score=196.06 Aligned_cols=109 Identities=40% Similarity=0.716 Sum_probs=99.2
Q ss_pred eEEEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCC------CCCccCCCcCCC-CCCCCCC
Q 047766 7 NAIAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRH------ECNSAGSHFDPH-NMSHGGK 79 (118)
Q Consensus 7 ~Ava~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~------~c~saGgh~np~-~~~h~~p 79 (118)
++.+.+....+...|+|++++.+.+ +.++..+.+|+||+|+|||||+|+|++ .|.||||||||. .++|+.|
T Consensus 30 ~~~~~~~~~~G~~vG~vt~~e~~~g--~~~~~~~~~L~pg~hGfHIHe~G~C~pkdgk~~~~~sAGGHfdP~~~~~Hg~p 107 (179)
T COG2032 30 KANAVLVDGTGKDVGTVTITETGYG--LLFTPALGGLPPGEHGFHIHEKGSCTPKDGKPVDFLSAGGHFDPQNTKKHGGP 107 (179)
T ss_pred cceeeccCCCCceeEEEEEeecCCc--eEEeecccCCCCcceeEEecccCCCcCCCCCCcccccccCCcCCccCCCCCCC
Confidence 5666676666789999999999986 999999999999999999999999987 699999999999 6899999
Q ss_pred CCCCCCcCcccceEE---------------eecCCCCcccceEEEecCCCCCC
Q 047766 80 EDEHRHVGDLGNLFG---------------DVYGPDSIIGRAIVIHKDQDDFG 117 (118)
Q Consensus 80 ~~~~~~~GDLgnl~~---------------~L~g~~siiGRSiVIH~~~Dd~g 117 (118)
+.+..|+|||+||++ +|.+..+++|||||||+.+|||.
T Consensus 108 ~~~~~H~GDLP~L~v~~dG~a~~~v~~~~~~l~~l~~v~G~alvIHag~Dd~~ 160 (179)
T COG2032 108 NADGGHAGDLPNLFVNADGKATLPVLAPRLKLKGLLEVKGRALVIHAGGDDYS 160 (179)
T ss_pred CCCCCCcCcCcceEECCCCcEEEEEecccceeccccccCCeEEEEEcCCcccc
Confidence 998899999999998 34568899999999999999996
No 10
>KOG4656 consensus Copper chaperone for superoxide dismutase [Inorganic ion transport and metabolism]
Probab=99.95 E-value=5e-29 Score=185.48 Aligned_cols=102 Identities=39% Similarity=0.717 Sum_probs=90.1
Q ss_pred EEEEeCCCCCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEeccCCCCCCCCccCCCcCCCCCCCCCCCCCCCCcCc
Q 047766 9 IAVITGREGGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAAGDTRHECNSAGSHFDPHNMSHGGKEDEHRHVGD 88 (118)
Q Consensus 9 va~l~~~~~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~gd~~~~c~saGgh~np~~~~h~~p~~~~~~~GD 88 (118)
++.+++ ++.|.|.+||.|.... .++|+++++||+||.|++||||+||++++|+|+|.||||+..+|++|. .||
T Consensus 85 ~a~~~~-~~~v~GvvRf~qvt~e-k~lid~tvdGlspG~h~~~Ihe~GDlsng~~StG~~ynpf~~p~g~~~-----~gD 157 (247)
T KOG4656|consen 85 VAKYTG-PQAVQGVVRFVQVTEE-KTLIDGTVDGLSPGLHGLHIHEYGDLSNGCESTGKHYNPFQEPHGCPN-----EGD 157 (247)
T ss_pred HHHhcC-CccceeEEEEEEeccc-cEEEEEEecCCCCcccceeEeeccccccchhhcccccCCCcCCCCCCC-----ccc
Confidence 344444 4689999999999986 899999999999999999999999999999999999999999999864 499
Q ss_pred ccceEEe------e------cCCCCcccceEEEecCCCCCC
Q 047766 89 LGNLFGD------V------YGPDSIIGRAIVIHKDQDDFG 117 (118)
Q Consensus 89 Lgnl~~~------L------~g~~siiGRSiVIH~~~Dd~g 117 (118)
|||+.++ + ...|++||||+||.+..||+|
T Consensus 158 LGn~~ad~nGraf~s~~de~LkvwdlIGRsvVi~k~~ddlg 198 (247)
T KOG4656|consen 158 LGNNRADKNGRAFFSAPDEKLKVWDLIGRSVVISKSLDDLG 198 (247)
T ss_pred ccccccccCCcEEEecccccccHhhhhceeEEEeccccccC
Confidence 9999871 1 246999999999999999975
No 11
>PF07452 CHRD: CHRD domain; InterPro: IPR010895 CHRD (after SWISS-PROT abbreviation for chordin) is a novel domain identified in chordin, an inhibitor of bone morphogenetic proteins. This family includes bacterial homologues. It is anticipated to have an immunoglobulin-like beta-barrel structure based on limited similarity to superoxide dismutases but, as yet, no clear functional prediction can be made [].
Probab=86.96 E-value=5 Score=26.70 Aligned_cols=46 Identities=26% Similarity=0.434 Sum_probs=36.4
Q ss_pred EEEEeCCC------CCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEec
Q 047766 9 IAVITGRE------GGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHA 54 (118)
Q Consensus 9 va~l~~~~------~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe 54 (118)
.|.|.+.. ..-.|.+.|+-..++..+.+++.++||....-.+|||.
T Consensus 4 ~A~L~g~~evp~~~s~a~G~a~~~l~~~~~~l~y~i~~~gl~~~~~~~hih~ 55 (119)
T PF07452_consen 4 SALLTGSQEVPPVTSSASGTAWFTLDDDGNTLHYSITLSGLSSPPTAAHIHQ 55 (119)
T ss_pred EEEeeCcccCCCCCCCCEEEEEEEEECCCCEEEEEEEEeCCCCCcEEEEEEc
Confidence 46666532 46789999998887556889999999966678999998
No 12
>smart00754 CHRD A domain in the BMP inhibitor chordin and in microbial proteins.
Probab=80.29 E-value=14 Score=24.65 Aligned_cols=38 Identities=29% Similarity=0.482 Sum_probs=30.6
Q ss_pred CCceEEEEEEEcCCCCcEEEEEEEecCCCCcceeEEecc
Q 047766 17 GGPKGSIFFSQDGDHGPTILNGYLHGLPPGHHGFHVHAA 55 (118)
Q Consensus 17 ~~v~G~i~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~ 55 (118)
....|.+.|+-..+ +.+..++.++||..-.-..|||+-
T Consensus 18 t~a~G~a~~~l~~~-~~l~y~i~~~gl~~~~~~~hih~~ 55 (118)
T smart00754 18 TGAVGGAWFTLDDD-GSLHYQVTLSGLSGPETAAHIHEG 55 (118)
T ss_pred CCcEEEEEEEECCC-CEEEEEEEEcccCCCceeeeEecc
Confidence 57899999998854 478899999999863338999983
No 13
>PF07731 Cu-oxidase_2: Multicopper oxidase; InterPro: IPR011706 Copper is one of the most prevalent transition metals in living organisms and its biological function is intimately related to its redox properties. Since free copper is toxic, even at very low concentrations, its homeostasis in living organisms is tightly controlled by subtle molecular mechanisms. In eukaryotes, before being transported inside the cell via the high-affinity copper transporters of the CTR family, the copper (II) ion is reduced to copper (I). In blue copper proteins such as cupredoxin, the copper (I) ion form is stabilised by a constrained His2Cys coordination environment. Multicopper oxidases oxidise their substrate by accepting electrons at a mononuclear copper centre and transferring them to a trinuclear copper centre; dioxygen binds to the trinuclear centre and, following the transfer of four electrons, is reduced to two molecules of water []. There are three spectroscopically different copper centres found in multicopper oxidases: type 1 (or blue), type 2 (or normal) and type 3 (or coupled binuclear) [, ]. Multicopper oxidases consist of 2, 3 or 6 of these homologous domains, which also share homology to the cupredoxins azurin and plastocyanin. Structurally, these domains consist of a cupredoxin-like fold, a beta-sandwich consisting of 7 strands in 2 beta-sheets, arranged in a Greek-key beta-barrel []. Multicopper oxidases include: Ceruloplasmin (1.16.3.1 from EC) (ferroxidase), a 6-domain enzyme found in the serum of mammals and birds that oxidizes different inorganic and organic substances; exhibits internal sequence homology that appears to have evolved from the triplication of a Cu-binding domain similar to that of laccase and ascorbate oxidase. Laccase (1.10.3.2 from EC) (urishiol oxidase), a 3-domain enzyme found in fungi and plants, which oxidizes different phenols and diamines. CueO is a laccase found in Escherichia coli that is involved in copper-resistance []. Ascorbate oxidase (1.10.3.3 from EC), a 3-domain enzyme found in higher plants. Nitrite reductase (1.7.2.1 from EC), a 2-domain enzyme containing type-1 and type-2 copper centres [, ]. In addition to the above enzymes there are a number of other proteins that are similar to the multi-copper oxidases in terms of structure and sequence, some of which have lost the ability to bind copper. These include: copper resistance protein A (copA) from a plasmid in Pseudomonas syringae; domain A of (non-copper binding) blood coagulation factors V (Fa V) and VIII (Fa VIII) []; yeast FET3 required for ferrous iron uptake []; yeast hypothetical protein YFL041w; and the fission yeast homologue SpAC1F7.08. This entry represents multicopper oxidase type 2 domains.; GO: 0005507 copper ion binding, 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3GDC_C 3ZX1_A 2YAH_A 2YAR_A 2YAQ_A 2YAO_A 2YAM_A 2YAF_A 2YAP_A 2XU9_A ....
Probab=43.99 E-value=27 Score=23.39 Aligned_cols=23 Identities=22% Similarity=0.325 Sum_probs=17.2
Q ss_pred EEEEEEEecCCCCcceeEEeccC
Q 047766 34 TILNGYLHGLPPGHHGFHVHAAG 56 (118)
Q Consensus 34 v~v~~~i~GL~~g~h~~HIHe~g 56 (118)
-.+++.+.+.....|.||+|-..
T Consensus 42 ~~v~~~l~N~~~~~Hp~HlHG~~ 64 (138)
T PF07731_consen 42 DVVEIVLQNNGSMPHPFHLHGHS 64 (138)
T ss_dssp SEEEEEEEECTTSSEEEEETTSE
T ss_pred CEEEEEEECCCCCccceEEEeeE
Confidence 45666777766678999999653
No 14
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=42.19 E-value=22 Score=20.74 Aligned_cols=19 Identities=32% Similarity=0.459 Sum_probs=14.5
Q ss_pred EEEEecCCCCcceeEEecc
Q 047766 37 NGYLHGLPPGHHGFHVHAA 55 (118)
Q Consensus 37 ~~~i~GL~~g~h~~HIHe~ 55 (118)
.++++.|+||.|-|.|...
T Consensus 30 ~~~~~~L~~G~Y~l~V~a~ 48 (66)
T PF07495_consen 30 SISYTNLPPGKYTLEVRAK 48 (66)
T ss_dssp EEEEES--SEEEEEEEEEE
T ss_pred EEEEEeCCCEEEEEEEEEE
Confidence 7888999999999999864
No 15
>PF09912 DUF2141: Uncharacterized protein conserved in bacteria (DUF2141); InterPro: IPR018673 This family of conserved hypothetical proteins has no known function.
Probab=31.32 E-value=49 Score=22.18 Aligned_cols=21 Identities=24% Similarity=0.369 Sum_probs=17.9
Q ss_pred EEEEEEEecCCCCcceeEEec
Q 047766 34 TILNGYLHGLPPGHHGFHVHA 54 (118)
Q Consensus 34 v~v~~~i~GL~~g~h~~HIHe 54 (118)
-.+++++..||||.|++-+..
T Consensus 41 ~~~~~~f~~lp~G~YAi~v~h 61 (112)
T PF09912_consen 41 GTVTITFEDLPPGTYAIAVFH 61 (112)
T ss_pred CcEEEEECCCCCccEEEEEEE
Confidence 467888899999999999874
No 16
>PF08896 DUF1842: Domain of unknown function (DUF1842); InterPro: IPR014992 This domain is found at the N terminus of proteins that are functionally uncharacterised.
Probab=30.61 E-value=1.7e+02 Score=19.99 Aligned_cols=26 Identities=15% Similarity=0.252 Sum_probs=17.9
Q ss_pred CCCceEEEEEEEcCCCCcEEEEEEEec
Q 047766 16 EGGPKGSIFFSQDGDHGPTILNGYLHG 42 (118)
Q Consensus 16 ~~~v~G~i~f~q~~~~~~v~v~~~i~G 42 (118)
+..|+|.++++|...- ++.|...++|
T Consensus 30 ~~~VsG~a~ItQat~p-pl~~~s~v~G 55 (114)
T PF08896_consen 30 DKSVSGRARITQATNP-PLNFHSDVWG 55 (114)
T ss_pred CCEEEeEEEEEEecCC-CcceEEEeEE
Confidence 5688888888887643 5666555554
No 17
>PF05738 Cna_B: Cna protein B-type domain; InterPro: IPR008454 This entry represents a repeated B region domain found in the collagen-binding surface protein Cna in Staphylococcus aureus, as well as other related domains. The B region domain of Cna has a prealbumin-like beta-sandwich fold of seven strands in two sheets with a Greek key topology []. However, this domain does not mediate collagen binding, the IPR008456 from INTERPRO region carries out that function; instead it appears to form a stalk that presents the ligand binding domain away from the bacterial cell surface. Cna is a collagen-binding MSCRAMM (Microbial Surface Component Recognizing Adhesive Matrix Molecules), and is necessary and sufficient for S. aureus cells to adhere to cartilage.; PDB: 2X5P_A 3RKP_A 3KPT_A 1VLF_T 1TI2_F 1TI6_D 1TI4_J 1VLE_V 1VLD_X 3PF2_A ....
Probab=20.92 E-value=1.7e+02 Score=17.02 Aligned_cols=25 Identities=20% Similarity=0.472 Sum_probs=14.4
Q ss_pred EEEEcCCCCcEEEEEEEecCCCCcceeEEecc
Q 047766 24 FFSQDGDHGPTILNGYLHGLPPGHHGFHVHAA 55 (118)
Q Consensus 24 ~f~q~~~~~~v~v~~~i~GL~~g~h~~HIHe~ 55 (118)
.++-...| .+.+.+|++|. |.|+|.
T Consensus 20 ~~~Td~~G-----~~~f~~L~~G~--Y~l~E~ 44 (70)
T PF05738_consen 20 TVTTDENG-----KYTFKNLPPGT--YTLKET 44 (70)
T ss_dssp EEEGGTTS-----EEEEEEEESEE--EEEEEE
T ss_pred EEEECCCC-----EEEEeecCCeE--EEEEEE
Confidence 34444444 45667788887 444443
No 18
>PF10698 DUF2505: Protein of unknown function (DUF2505); InterPro: IPR019639 This entry represents proteins found Actinobacteria and Proteobacteria. The function is not known.
Probab=20.34 E-value=1.9e+02 Score=20.22 Aligned_cols=27 Identities=19% Similarity=0.293 Sum_probs=16.1
Q ss_pred CCCCCceEEEEEEEcCCCCcEEEEEEE
Q 047766 14 GREGGPKGSIFFSQDGDHGPTILNGYL 40 (118)
Q Consensus 14 ~~~~~v~G~i~f~q~~~~~~v~v~~~i 40 (118)
+.+..++|+++++....+..+.+++++
T Consensus 99 G~P~~~~G~~~L~~~~~gt~~~~~g~v 125 (159)
T PF10698_consen 99 GAPVSISGTMRLRPDGGGTRLTVEGEV 125 (159)
T ss_pred CceEEEEEEEEEecCCCCEEEEEEEEE
Confidence 334578888888886655333334433
Done!