BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 047767
         (666 letters)

Database: nr 
           23,463,169 sequences; 8,064,228,071 total letters

Searching..................................................done



>gi|224130346|ref|XP_002328586.1| predicted protein [Populus trichocarpa]
 gi|222838568|gb|EEE76933.1| predicted protein [Populus trichocarpa]
          Length = 699

 Score =  862 bits (2228), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 425/671 (63%), Positives = 524/671 (78%), Gaps = 12/671 (1%)

Query: 7   LPRVRTITTLAPTCTSIV----------PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVK 56
           L  VRT+TTL       V            SSSL+L+SY QP+    IY+ NRT+D ++K
Sbjct: 12  LHLVRTVTTLTEKIHRPVLSSAAAAATTTSSSSLVLESYLQPHINDTIYAKNRTLDSYIK 71

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           SG++  A+KLFDEM   D+VTYNL++SG GK+  PKQALY Y EMVS GIKES STFSSV
Sbjct: 72  SGNVTLAQKLFDEMSMCDVVTYNLMVSGLGKYGIPKQALYYYYEMVSLGIKESPSTFSSV 131

Query: 117 LSVCSNA-GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           LS+CS+  GF  +GIQ+HCR++ LG G NL+I + LV  YM+MG       LFDE+PERN
Sbjct: 132 LSICSSQDGFLRQGIQVHCRIIKLGCGSNLFIRTSLVGFYMQMGCFDLGFSLFDEMPERN 191

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           LATWNL+LR FCEL R  E+L +Y++MK +GV PNGLSFCY++RGC       EGKQLH 
Sbjct: 192 LATWNLVLRGFCELGRFHELLSVYHEMKLDGVHPNGLSFCYLIRGCCNEKFFYEGKQLHC 251

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           H+IK+GW   NIFVANALVDFYSAC SL +A+KSF+ I V+DVISWNSIVS+YAD  L+F
Sbjct: 252 HIIKVGWARSNIFVANALVDFYSACKSLNDARKSFESIKVEDVISWNSIVSVYADCGLLF 311

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +A+ELF+ MQ   K PSIRSFV  L+ +S  GN+ FGKQIH  V K+GFD GS HVQSAL
Sbjct: 312 EAVELFYLMQFWGK-PSIRSFVALLHLSSLNGNILFGKQIHCCVLKMGFDIGSFHVQSAL 370

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMYGKC  IESSV+ FES P ++ + CNSLMTSLLH G + D VEM+G MVDEGIGLDE
Sbjct: 371 IDMYGKCRYIESSVSAFESVPKKTTQICNSLMTSLLHCGIVYDVVEMYGLMVDEGIGLDE 430

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VT STTLKALSVS  A++ SCRL+HCCA+K GF S+IAVSCSL+DAYSRCGH++LS +VF
Sbjct: 431 VTFSTTLKALSVSEFASMDSCRLVHCCAMKLGFGSDIAVSCSLIDAYSRCGHVQLSKKVF 490

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           E++PSPNV+CFTSI+NG ++NG+GRE L   E MI++GL PDKVTFLCVL GC+HSG+ +
Sbjct: 491 EQLPSPNVICFTSIINGLAQNGLGRECLQTFEAMIRKGLEPDKVTFLCVLTGCSHSGLFE 550

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG+L+F SMK+ YGI   ++H+SCM+D+LGRAG+LD+AEEL Q+ PG GDC+MW+SLLRS
Sbjct: 551 EGRLIFYSMKAQYGICPAKEHFSCMVDILGRAGLLDEAEELTQKAPGRGDCVMWTSLLRS 610

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           CR++ NEI+GRR A  L+EL+P DF+VY QVSNFYS+IGE+E SM IRE A+ARKLTR+I
Sbjct: 611 CRIYRNEIVGRRAAKALLELDPEDFSVYLQVSNFYSDIGEYESSMHIRELAIARKLTREI 670

Query: 656 GHSLIEVNSCH 666
           G S IEVN+ H
Sbjct: 671 GRSFIEVNNPH 681


>gi|297739065|emb|CBI28554.3| unnamed protein product [Vitis vinifera]
          Length = 1125

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 411/635 (64%), Positives = 505/635 (79%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR 89
           LLLDSYC+ NP +++YS+NR ID  +KSG L SA  LF++MP RD+VT+NLLI+G  +  
Sbjct: 31  LLLDSYCETNPHVDLYSNNRAIDSLIKSGSLASALHLFEKMPIRDVVTWNLLINGYRQHE 90

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
            PKQA   Y EMV  GI+ES+STFSSVLSVCSNAG + E IQ+H RV+ LGF  NLY+  
Sbjct: 91  LPKQAFQYYSEMVFQGIRESSSTFSSVLSVCSNAGLHQEAIQVHSRVIFLGFSSNLYVAG 150

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
            LVDLYM+MG    AL LF  LP RNLA  NL+LR FCELSR + +  MY+ MK E V+P
Sbjct: 151 SLVDLYMQMGDCDTALRLFSNLPRRNLAICNLVLRGFCELSRSEWLFTMYSAMKEECVKP 210

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           NGL+FCY++RGC  G   DEGKQLH H IK+GWV+ N+F ANALVDFY  CG+LI+AKKS
Sbjct: 211 NGLTFCYLIRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLIDAKKS 270

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           F+ I  +DVISWNSIVS++A   L+ DALELF RMQ   K+PSIRSFV FLN A    N+
Sbjct: 271 FEAIRDEDVISWNSIVSVFAASGLLSDALELFARMQSWGKKPSIRSFVGFLNAAIGCDNI 330

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
            FGKQI  +V KLGF  GSVHV+SAL +MYGKC  I+SSV+VFES P R+LE CNSLM+S
Sbjct: 331 IFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTLEICNSLMSS 390

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
           LLH G ++D +E+FG MVDEGIG+DEVTLST+LKA  VSA  +L  CRLLHCCAIKSGFE
Sbjct: 391 LLHCGIVEDVLELFGLMVDEGIGVDEVTLSTSLKASLVSAFGSLACCRLLHCCAIKSGFE 450

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            + AVSCSL+DAYS+ GH+ELSHQ+FE++ SPN +CFTSI+NGY+RNGMGRE L+MLE+M
Sbjct: 451 FDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGLEMLEIM 510

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
            ++GL PD+VTFLC L GC+HSG+V+EG+ VFNSMKS++GI  D+QHYSCM+D+LGRAG+
Sbjct: 511 AKQGLKPDRVTFLCALTGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRAGL 570

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
           LD+AE LL+  P   D +MWSSLL+SCR+HG+ I+GRR A +LMELEP D A Y Q S+F
Sbjct: 571 LDEAEGLLKHAPAKSDSVMWSSLLQSCRIHGDTIVGRRAAKVLMELEPEDPATYLQASSF 630

Query: 630 YSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           YSEIGE E+SMQIRE A+AR++ R++GHSLIEVN+
Sbjct: 631 YSEIGELEISMQIREIAIARRMKREMGHSLIEVNT 665


>gi|359473235|ref|XP_003631274.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic-like [Vitis vinifera]
          Length = 667

 Score =  842 bits (2176), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 412/635 (64%), Positives = 505/635 (79%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR 89
           LLLDSYC+ NP +++YS+NR ID  +KSG L SA  LF++MP RD+VT+NLLI+G  +  
Sbjct: 31  LLLDSYCETNPHVDLYSNNRAIDSLIKSGSLASALHLFEKMPIRDVVTWNLLINGYRQHE 90

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
            PKQA   Y EMV  GI+ES+STFSSVLSVCSNAG + E IQ+H RV+ LGF  NLY+  
Sbjct: 91  LPKQAFQYYSEMVFQGIRESSSTFSSVLSVCSNAGLHQEAIQVHSRVIFLGFSSNLYVAG 150

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
            LVDLYM+MG    AL LF  LP RNLA  NL+LR FCELSR + +  MY+ MK E V+P
Sbjct: 151 SLVDLYMQMGDCDTALRLFSNLPRRNLAICNLVLRGFCELSRSEWLFTMYSAMKEECVKP 210

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           NGL+FCY++RGC  G   DEGKQLH H IK+GWV+ N+F ANALVDFY  CG+LI+AKKS
Sbjct: 211 NGLTFCYLIRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYCVCGNLIDAKKS 270

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           F+ I  +DVISWNSIVS++A   L+ DALELF RMQ   K+PSIRSFV FLN A    N+
Sbjct: 271 FEAIRDEDVISWNSIVSVFAASGLLSDALELFARMQSWGKKPSIRSFVGFLNAAIGCDNI 330

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
            FGKQI  +V KLGF  GSVHV+SAL +MYGKC  I+SSV+VFES P R+LE CNSLM+S
Sbjct: 331 IFGKQIQSHVVKLGFAPGSVHVESALINMYGKCGDIKSSVSVFESVPERTLEICNSLMSS 390

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
           LLH G ++D +E+FG MVDEGIG+DEVTLST+LKA  VSA  +L  CRLLHCCAIKSGFE
Sbjct: 391 LLHCGIVEDVLELFGLMVDEGIGVDEVTLSTSLKASLVSAFGSLACCRLLHCCAIKSGFE 450

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            + AVSCSL+DAYS+ GH+ELSHQ+FE++ SPN +CFTSI+NGY+RNGMGRE L+MLE+M
Sbjct: 451 FDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGLEMLEIM 510

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
            ++GL PD+VTFLC L GC+HSG+V+EG+ VFNSMKS++GI  D+QHYSCM+D+LGRAG+
Sbjct: 511 AKQGLKPDRVTFLCALTGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRAGL 570

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
           LD+AE LL+  P   D +MWSSLL+SCR+HG+ I+GRR A +LMELEP D A Y Q S+F
Sbjct: 571 LDEAEGLLKHAPAKSDSVMWSSLLQSCRIHGDTIVGRRAAKVLMELEPEDPATYLQASSF 630

Query: 630 YSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           YSEIGE E+SMQIRE A+AR++ R++GHSLIEVNS
Sbjct: 631 YSEIGELEISMQIREIAIARRMKREMGHSLIEVNS 665


>gi|147795881|emb|CAN65318.1| hypothetical protein VITISV_006411 [Vitis vinifera]
          Length = 1052

 Score =  813 bits (2100), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 403/635 (63%), Positives = 493/635 (77%), Gaps = 11/635 (1%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR 89
           LLLDSYC+ NP +++YS+NR ID  +KSG L SA  LF++MP RD+VT+NLLI+G  +  
Sbjct: 31  LLLDSYCETNPHVDLYSNNRAIDSLIKSGSLASALHLFEKMPIRDVVTWNLLINGHRQHE 90

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
            PKQA   Y EMV  GI+ES+STFSSVLSVCSNAG + E IQ+H RV+ LGF  NLY+  
Sbjct: 91  LPKQAFQYYSEMVFQGIRESSSTFSSVLSVCSNAGLHQEAIQVHSRVIFLGFSSNLYVAG 150

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
            LVDLYM+MG    AL LF  LP RNLA  NL+LR FCELSR + +  MY  MK E V+P
Sbjct: 151 SLVDLYMQMGDCDTALRLFSNLPRRNLAICNLVLRGFCELSRSEWLFNMYPAMKEECVKP 210

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           NGL+FCY++RGC  G   DEGKQLH H IK+GWV+ N+F ANALVDFYS CG+LI+AKKS
Sbjct: 211 NGLTFCYLIRGCGNGRFCDEGKQLHCHAIKVGWVEANLFAANALVDFYSVCGNLIDAKKS 270

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           F+ I  +DVISWNSIVS++A   L+ DALELF RMQ   K+PSIRSFV FLN A    N+
Sbjct: 271 FEAIRDEDVISWNSIVSVFAASGLLSDALELFARMQSWGKKPSIRSFVGFLNAAIGCDNI 330

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
            FGKQI  +V KLGF  GS           GKC  I+SSV+VFES P R+LE CNSLM+S
Sbjct: 331 IFGKQIQSHVVKLGFAPGS-----------GKCGDIKSSVSVFESVPERTLEICNSLMSS 379

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
           LLH G ++D +E+FG MVDEGIG+DEVTLST+LKA  VSA  +L  CRLLHC AIKSGFE
Sbjct: 380 LLHCGIVEDVLELFGLMVDEGIGVDEVTLSTSLKASLVSAFGSLAXCRLLHCXAIKSGFE 439

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            + AVSCSL+DAYS+ GH+ELSHQ+FE++ SPN +CFTSI+NGY+RNGMGRE L+MLE+M
Sbjct: 440 FDTAVSCSLIDAYSKYGHVELSHQIFEQLHSPNAICFTSIINGYARNGMGREGLEMLEIM 499

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
            ++GL PD+VTFLC L GC+HSG+V+EG+ VFNSMKS++GI  D+QHYSCM+D+LGRAG+
Sbjct: 500 AKQGLKPDRVTFLCALTGCSHSGLVEEGRSVFNSMKSIHGIHPDQQHYSCMVDLLGRAGL 559

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
           LD+AE LL+  P   D +MWSSLL+SCR+HG+ I+GRR A +LMELE  D A Y Q S+F
Sbjct: 560 LDEAEGLLKHAPAKSDSVMWSSLLQSCRIHGDTIVGRRAAKVLMELEXEDPATYLQASSF 619

Query: 630 YSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           YSEIGE E+SMQIRE A+AR++ R++GHSLIEVNS
Sbjct: 620 YSEIGELEISMQIREIAIARRMKREMGHSLIEVNS 654


>gi|449450636|ref|XP_004143068.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 812

 Score =  780 bits (2015), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/653 (58%), Positives = 490/653 (75%), Gaps = 9/653 (1%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQP-----NPQLNIYSSNRTIDDFVKSG 58
           +K    VRTIT   P  +  V  +S + L     P     + +  IY  NR I+  +K G
Sbjct: 3   SKFASFVRTIT---PVKSEFVATTSPIHLPHPYSPLGLHVHARDLIYLKNRQINKLIKLG 59

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           HL+SA KLFDEMP  D+VTYNLLISGC    +P++A  +Y +MV  GI+ESASTF+SVL 
Sbjct: 60  HLDSAIKLFDEMPLHDVVTYNLLISGCLHNGYPQRAFGIYSQMVLRGIRESASTFTSVLG 119

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            CSN  F+ EG QIHCRV+  GF LNL+I S L+  YMRMG    AL LFDELP+RN+A 
Sbjct: 120 TCSNMDFFKEGSQIHCRVVLFGFTLNLFIASSLIGFYMRMGLHTVALKLFDELPQRNIAV 179

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WNL+LR  CEL + +++   ++KM+ EG+EPNGL+F Y++RG     LLDEGKQLH+  +
Sbjct: 180 WNLLLRWCCELRQFEKLQGFFSKMQLEGLEPNGLTFSYLLRGFGNEKLLDEGKQLHNRAV 239

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K+G V+ NIFV NALVDFY+ C SL EAK +F+ IP+D+VISWNSIV++YAD   + ++L
Sbjct: 240 KIGLVESNIFVQNALVDFYADCRSLTEAKNAFECIPLDNVISWNSIVAVYADVGFLSESL 299

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           ELF RMQ   KRPSIRS +  LN +SRT N+  GKQI     KLGF H S H+QSAL +M
Sbjct: 300 ELFSRMQFWGKRPSIRSLMALLNLSSRTRNIQLGKQIQSCALKLGFGHESSHLQSALINM 359

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           YG+C  IESSVAV+ES   R+LECCNSLMTSLLH G I+D +EMFG MVDE IGLDEVTL
Sbjct: 360 YGRCLDIESSVAVYESISVRTLECCNSLMTSLLHCGVIEDVIEMFGLMVDERIGLDEVTL 419

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           STTLKA+S+  S +L  CRLLHCCAIKSGFE +  VSCSLMD+YSRCGH+ELS +VFE+I
Sbjct: 420 STTLKAISI-CSPDLSRCRLLHCCAIKSGFEFSSVVSCSLMDSYSRCGHVELSWKVFEEI 478

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            SP V+CFTSI+NGY+RNG+G+E +++L++MIQRGL PDKVTFLC L GCNHSG+V+EG+
Sbjct: 479 YSPGVICFTSIINGYARNGLGKEGVEILKMMIQRGLKPDKVTFLCALIGCNHSGLVEEGR 538

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
            VF  MK++YGI+ D +HYSCM+D+LGRAG+LD+AE+L+Q+ P   + ++WSS+LRSCRV
Sbjct: 539 FVFELMKTLYGIEPDWKHYSCMVDLLGRAGLLDEAEKLIQKVPEKVNGVIWSSMLRSCRV 598

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           H NE IGR++   L++LE  D A+  Q SNFYS+IG+FE S Q+RE AL +K+
Sbjct: 599 HRNETIGRKIVKWLVDLEAEDPAILLQASNFYSDIGDFETSKQLREIALTKKV 651


>gi|238478589|ref|NP_173759.2| pentatricopeptide repeat-containing protein-like protein
           [Arabidopsis thaliana]
 gi|332192267|gb|AEE30388.1| pentatricopeptide repeat-containing protein-like protein
           [Arabidopsis thaliana]
          Length = 666

 Score =  759 bits (1959), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/666 (56%), Positives = 491/666 (73%), Gaps = 2/666 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLD--SYCQPNPQLNIYSSNRTIDDFVKSG 58
           M   + L  +R  TTLA    S+ P  ++  +D  S+ + NP   +Y+ NR ID+ +KSG
Sbjct: 1   MRGAQALYFLRRTTTLAQHLCSLTPFIATPRMDFSSFLEENPSDLVYTHNRRIDELIKSG 60

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           +L SA + FDEM  RD+VTYNLLISG  ++    +A+ LY EMVS G++ESASTF SVLS
Sbjct: 61  NLLSAHEAFDEMSVRDVVTYNLLISGNSRYGCSLRAIELYAEMVSCGLRESASTFPSVLS 120

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           VCS+  F  EGIQ+HCRV+SLGFG N+++ S LV LY  +     AL LFDE+ +RNLA 
Sbjct: 121 VCSDELFCREGIQVHCRVISLGFGCNMFVRSALVGLYACLRLVDVALKLFDEMLDRNLAV 180

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
            NL+LR FC+      +  +Y +M+ EGV  NGL++CYM+RGCS   L+ EGKQLHS V+
Sbjct: 181 CNLLLRCFCQTGESKRLFEVYLRMELEGVAKNGLTYCYMIRGCSHDRLVYEGKQLHSLVV 240

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K GW   NIFVAN LVD+YSACG L  + +SF+ +P  DVISWNSIVS+ ADY  + D+L
Sbjct: 241 KSGWNISNIFVANVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIVSVCADYGSVLDSL 300

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           +LF +MQ   KRPSIR F+ FLNF SR  ++  GKQIH YV K+GFD  S+HVQSAL DM
Sbjct: 301 DLFSKMQFWGKRPSIRPFMSFLNFCSRNSDIQSGKQIHCYVLKMGFDVSSLHVQSALIDM 360

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           YGKCN IE+S  +++S P  +LECCNSLMTSL+H G  KD +EMFG M+DEG G+DEVTL
Sbjct: 361 YGKCNGIENSALLYQSLPCLNLECCNSLMTSLMHCGITKDIIEMFGLMIDEGTGIDEVTL 420

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           ST LKALS+S   +L SC L+HCCAIKSG+ +++AVSCSL+DAY++ G  E+S +VF+++
Sbjct: 421 STVLKALSLSLPESLHSCTLVHCCAIKSGYAADVAVSCSLIDAYTKSGQNEVSRKVFDEL 480

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            +PN+ C TSI+NGY+RNGMG + + ML  M +  LIPD+VT L VL+GC+HSG+V+EG+
Sbjct: 481 DTPNIFCLTSIINGYARNGMGTDCVKMLREMDRMNLIPDEVTILSVLSGCSHSGLVEEGE 540

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           L+F+S++S YGI   R+ Y+CM+D+LGRAG+++KAE LL Q  G  DC+ WSSLL+SCR+
Sbjct: 541 LIFDSLESKYGISPGRKLYACMVDLLGRAGLVEKAERLLLQARGDADCVAWSSLLQSCRI 600

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H NE IGRR A +LM LEP +FAVY QVS FY EIG+FE+S QIRE A +R+L R+IG+S
Sbjct: 601 HRNETIGRRAAEVLMNLEPENFAVYIQVSKFYFEIGDFEISRQIREIAASRELMREIGYS 660

Query: 659 LIEVNS 664
            + V +
Sbjct: 661 SVVVKN 666


>gi|8778576|gb|AAF79584.1|AC007945_4 F28C11.9 [Arabidopsis thaliana]
          Length = 1161

 Score =  757 bits (1955), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/662 (56%), Positives = 489/662 (73%), Gaps = 2/662 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLD--SYCQPNPQLNIYSSNRTIDDFVKSG 58
           M   + L  +R  TTLA    S+ P  ++  +D  S+ + NP   +Y+ NR ID+ +KSG
Sbjct: 1   MRGAQALYFLRRTTTLAQHLCSLTPFIATPRMDFSSFLEENPSDLVYTHNRRIDELIKSG 60

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           +L SA + FDEM  RD+VTYNLLISG  ++    +A+ LY EMVS G++ESASTF SVLS
Sbjct: 61  NLLSAHEAFDEMSVRDVVTYNLLISGNSRYGCSLRAIELYAEMVSCGLRESASTFPSVLS 120

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           VCS+  F  EGIQ+HCRV+SLGFG N+++ S LV LY  +     AL LFDE+ +RNLA 
Sbjct: 121 VCSDELFCREGIQVHCRVISLGFGCNMFVRSALVGLYACLRLVDVALKLFDEMLDRNLAV 180

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
            NL+LR FC+      +  +Y +M+ EGV  NGL++CYM+RGCS   L+ EGKQLHS V+
Sbjct: 181 CNLLLRCFCQTGESKRLFEVYLRMELEGVAKNGLTYCYMIRGCSHDRLVYEGKQLHSLVV 240

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K GW   NIFVAN LVD+YSACG L  + +SF+ +P  DVISWNSIVS+ ADY  + D+L
Sbjct: 241 KSGWNISNIFVANVLVDYYSACGDLSGSMRSFNAVPEKDVISWNSIVSVCADYGSVLDSL 300

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           +LF +MQ   KRPSIR F+ FLNF SR  ++  GKQIH YV K+GFD  S+HVQSAL DM
Sbjct: 301 DLFSKMQFWGKRPSIRPFMSFLNFCSRNSDIQSGKQIHCYVLKMGFDVSSLHVQSALIDM 360

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           YGKCN IE+SV +++S P  +LECCNSLMTSL+H G  KD +EMFG M+DEG G+DEVTL
Sbjct: 361 YGKCNGIENSVLLYQSLPCLNLECCNSLMTSLMHCGITKDIIEMFGLMIDEGTGIDEVTL 420

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           ST LKALS+S   +L SC L+HCCAIKSG+ +++AVSCSL+DAY++ G  E+S +VF+++
Sbjct: 421 STVLKALSLSLPESLHSCTLVHCCAIKSGYAADVAVSCSLIDAYTKSGQNEVSRKVFDEL 480

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            +PN+ C TSI+NGY+RNGMG + + ML  M +  LIPD+VT L VL+GC+HSG+V+EG+
Sbjct: 481 DTPNIFCLTSIINGYARNGMGTDCVKMLREMDRMNLIPDEVTILSVLSGCSHSGLVEEGE 540

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           L+F+S++S YGI   R+ Y+CM+D+LGRAG+++KAE LL Q  G  DC+ WSSLL+SCR+
Sbjct: 541 LIFDSLESKYGISPGRKLYACMVDLLGRAGLVEKAERLLLQARGDADCVAWSSLLQSCRI 600

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H NE IGRR A +LM LEP +FAVY QVS FY EIG+FE+S QIRE A +R+L R+IG  
Sbjct: 601 HRNETIGRRAAEVLMNLEPENFAVYIQVSKFYFEIGDFEISRQIREIAASRELMREIGLL 660

Query: 659 LI 660
           L+
Sbjct: 661 LV 662


>gi|297845406|ref|XP_002890584.1| F28C11.9 [Arabidopsis lyrata subsp. lyrata]
 gi|297336426|gb|EFH66843.1| F28C11.9 [Arabidopsis lyrata subsp. lyrata]
          Length = 1134

 Score =  750 bits (1936), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 374/658 (56%), Positives = 482/658 (73%), Gaps = 2/658 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPL--SSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSG 58
           M   + L  +R  TTLA     + PL  +  +   S+ + NP   +Y+ NR ID+ +KSG
Sbjct: 1   MRGPQALYFLRRTTTLAQHLCPLAPLIVTPRMEFSSFLEENPSDVVYTHNRKIDELIKSG 60

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           +L SA ++FD M  RD+VTYNLLISG  +     +A+ +Y EMVS G++ESASTF SVLS
Sbjct: 61  NLVSAHEVFDGMSVRDVVTYNLLISGNSRNGCSLRAIEIYAEMVSCGLRESASTFPSVLS 120

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           VCS+  F  EGIQ+HCRV+SLGFG N+++ S LV LY        AL LFDE+PERNLA 
Sbjct: 121 VCSDELFCREGIQVHCRVISLGFGCNMFVRSALVGLYASFWLFDVALKLFDEMPERNLAV 180

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
            NL+L+ FCE      +  +Y +M+ EGV  NGL++CY++RGCS   LL  GKQLHS VI
Sbjct: 181 CNLLLKCFCETGESKRLFGVYCRMELEGVAKNGLTYCYLLRGCSNDQLLYVGKQLHSLVI 240

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K GW   NIFVANALVD+YSACG L  + KSF+ +P  DVISWNSIVS+ ADY  + D+L
Sbjct: 241 KSGWDISNIFVANALVDYYSACGDLSGSIKSFNVVPEKDVISWNSIVSVCADYGSVLDSL 300

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            LF +MQ   KRPSIRSF+ FLN  SR  ++  GKQIH YV K+GFD  S+ VQS+L DM
Sbjct: 301 GLFSKMQFWGKRPSIRSFMSFLNVCSRNSDIQSGKQIHCYVLKMGFDVSSLLVQSSLIDM 360

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           YGKCN IESSV  ++S P  +LECCNSLMTSL+H G  KD +EMFG MVDEG G+DEVTL
Sbjct: 361 YGKCNEIESSVLAYQSLPCLTLECCNSLMTSLMHCGITKDIIEMFGLMVDEGTGIDEVTL 420

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           ST LKALS+S   +L SC L+HCCAIKSG+ +++AVSCSL+D YS+ G  E+S +VF+++
Sbjct: 421 STVLKALSLSLPESLHSCTLVHCCAIKSGYAADVAVSCSLIDTYSKSGQNEVSRKVFDEL 480

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            SPN+ C TSI+NGY+RNGMGR+ ++ML  M Q+ LIPD+VT L VL+GC+HSG+V+EG+
Sbjct: 481 DSPNIFCLTSIINGYARNGMGRDCVEMLREMDQKNLIPDEVTILSVLSGCSHSGLVEEGE 540

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           L+F+S++  YGI   R+ Y+C++D+LGRAG+++KAE LL Q  G  DC+ WSSLL+SCR+
Sbjct: 541 LIFDSLELKYGISPGRKLYACLVDLLGRAGLVEKAERLLLQAHGDADCIAWSSLLQSCRI 600

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           H NE IGRR A +LM+LEP +FAVY QVS FY EIG+FE+S QIRE A +R+L R+I 
Sbjct: 601 HRNERIGRRAAEVLMDLEPENFAVYIQVSKFYFEIGDFEISRQIREIAASRELMREIA 658


>gi|255568776|ref|XP_002525359.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223535322|gb|EEF36997.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 483

 Score =  645 bits (1664), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 313/481 (65%), Positives = 379/481 (78%), Gaps = 1/481 (0%)

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
           MG    AL LFDELPERNLA WN++LR FCEL R DE+LR+YN+ K + +E NGLSFCY+
Sbjct: 1   MGLDDWALGLFDELPERNLAIWNVVLRGFCELGRFDELLRIYNETKLDNLELNGLSFCYL 60

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +RGC      +EG+QLH HVIK+GWV+ NIFVANALVDFYSACGSL +AK SF  IP++D
Sbjct: 61  IRGCCNKTFFNEGRQLHCHVIKVGWVNSNIFVANALVDFYSACGSLNDAKISFQAIPLED 120

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           VISWNSI+S+ AD  L FDALELF+ MQ   K+PSIRSFV FLN +S  G++ FGKQIH 
Sbjct: 121 VISWNSILSVCADNGLHFDALELFYMMQFWGKKPSIRSFVGFLNLSSMNGDIVFGKQIHC 180

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            V KLGF +GSVHVQSAL DMYGKC  IE+S++V+ES P R+LECCNSLMTSLLHSG + 
Sbjct: 181 CVVKLGFYNGSVHVQSALIDMYGKCFDIENSISVYESLPKRTLECCNSLMTSLLHSGFVD 240

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           D ++MFG MVDEGIGLDE T  T LKAL  S   +L SCRL+HCC IK GFES+I+VSCS
Sbjct: 241 DVIDMFGLMVDEGIGLDEFTFCTVLKALLESVLVSLASCRLVHCCVIKFGFESDISVSCS 300

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D YSR G +ELS +VF ++ SPNV C TSI+NG++RNGMGRE L++ E MIQ+GL PD
Sbjct: 301 LIDGYSRSGKVELSQKVFSQLSSPNVFCLTSIINGFARNGMGRECLEIFETMIQKGLKPD 360

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           KVTFLCVL GC+HSG+V+EG+ VFNSM S +GI  DR+H SCM+D+LGRAG+LD+AEELL
Sbjct: 361 KVTFLCVLTGCSHSGLVEEGRSVFNSMTSRHGICPDREHLSCMVDLLGRAGLLDEAEELL 420

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           Q+TPG G C+MWSSLLRSCRVH NE++GRR A     L      + SQVSNF  ++G  +
Sbjct: 421 QRTPGRGTCVMWSSLLRSCRVHRNEMVGRRAAKFYWNLIQTILQL-SQVSNFILKLGNLK 479

Query: 638 V 638
           +
Sbjct: 480 L 480



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 109/465 (23%), Positives = 213/465 (45%), Gaps = 9/465 (1%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A  LFDE+P R++  +N+++ G  +     + L +Y+E     ++ +  +F  ++  C N
Sbjct: 7   ALGLFDELPERNLAIWNVVLRGFCELGRFDELLRIYNETKLDNLELNGLSFCYLIRGCCN 66

Query: 123 AGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
             F+ EG Q+HC V+ +G+   N+++ + LVD Y   G    A   F  +P  ++ +WN 
Sbjct: 67  KTFFNEGRQLHCHVIKVGWVNSNIFVANALVDFYSACGSLNDAKISFQAIPLEDVISWNS 126

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           +L    +     + L ++  M+  G +P+  SF   +   S+   +  GKQ+H  V+KLG
Sbjct: 127 ILSVCADNGLHFDALELFYMMQFWGKKPSIRSFVGFLNLSSMNGDIVFGKQIHCCVVKLG 186

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
           + + ++ V +AL+D Y  C  +  +   ++ +P   +   NS+++       + D +++F
Sbjct: 187 FYNGSVHVQSALIDMYGKCFDIENSISVYESLPKRTLECCNSLMTSLLHSGFVDDVIDMF 246

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFG--KQIHGYVTKLGFDHGSVHVQSALTDMY 359
             M          +F   L     +  V     + +H  V K GF+   + V  +L D Y
Sbjct: 247 GLMVDEGIGLDEFTFCTVLKALLESVLVSLASCRLVHCCVIKFGFE-SDISVSCSLIDGY 305

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +   +E S  VF      ++ C  S++     +G  ++ +E+F  M+ +G+  D+VT  
Sbjct: 306 SRSGKVELSQKVFSQLSSPNVFCLTSIINGFARNGMGRECLEIFETMIQKGLKPDKVTFL 365

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L   S S     G   + +    + G   +      ++D   R G ++ + ++ ++ P
Sbjct: 366 CVLTGCSHSGLVEEGR-SVFNSMTSRHGICPDREHLSCMVDLLGRAGLLDEAEELLQRTP 424

Query: 480 SPNV-VCFTSIMNG--YSRNGM-GREALDMLEVMIQRGLIPDKVT 520
                V ++S++      RN M GR A      +IQ  L   +V+
Sbjct: 425 GRGTCVMWSSLLRSCRVHRNEMVGRRAAKFYWNLIQTILQLSQVS 469



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 172/340 (50%), Gaps = 6/340 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI+ +N  +D +   G LN AK  F  +P  D++++N ++S C        AL L+  M 
Sbjct: 89  NIFVANALVDFYSACGSLNDAKISFQAIPLEDVISWNSILSVCADNGLHFDALELFYMMQ 148

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPS 161
             G K S  +F   L++ S  G    G QIHC V+ LGF   ++++ S L+D+Y +    
Sbjct: 149 FWGKKPSIRSFVGFLNLSSMNGDIVFGKQIHCCVVKLGFYNGSVHVQSALIDMYGKCFDI 208

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             ++ +++ LP+R L   N ++ +       D+V+ M+  M  EG+  +  +FC +++  
Sbjct: 209 ENSISVYESLPKRTLECCNSLMTSLLHSGFVDDVIDMFGLMVDEGIGLDEFTFCTVLKAL 268

Query: 222 --SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             S+ + L   + +H  VIK G+ + +I V+ +L+D YS  G +  ++K F  +   +V 
Sbjct: 269 LESVLVSLASCRLVHCCVIKFGF-ESDISVSCSLIDGYSRSGKVELSQKVFSQLSSPNVF 327

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
              SI++ +A   +  + LE+F  M     +P   +F+  L   S +G V  G+ +   +
Sbjct: 328 CLTSIINGFARNGMGRECLEIFETMIQKGLKPDKVTFLCVLTGCSHSGLVEEGRSVFNSM 387

Query: 340 T-KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
           T + G      H+ S + D+ G+  +++ +  + +  PGR
Sbjct: 388 TSRHGICPDREHL-SCMVDLLGRAGLLDEAEELLQRTPGR 426


>gi|449500403|ref|XP_004161088.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g13600-like [Cucumis sativus]
          Length = 618

 Score =  641 bits (1653), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 306/494 (61%), Positives = 390/494 (78%), Gaps = 1/494 (0%)

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
           MG    AL LFDELP+RN+A WNL+LR  CEL + +++   ++KM+ EG+EPNGL+F Y+
Sbjct: 1   MGLHTVALKLFDELPQRNIAVWNLLLRWCCELRQFEKLQGFFSKMQLEGLEPNGLTFSYL 60

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +RG     LLDEGKQLH+  +K+G V+ NIFV NALVDFY+ C SL EAK +F+ IP+D+
Sbjct: 61  LRGFGNEKLLDEGKQLHNRAVKIGLVESNIFVQNALVDFYADCRSLTEAKXAFECIPLDN 120

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           VISWNSIV++YAD   + ++LELF RMQ   KRPSIRS +  LN +SRT N+  GKQI  
Sbjct: 121 VISWNSIVAVYADVGFLSESLELFSRMQFWGKRPSIRSLMALLNLSSRTRNIQLGKQIQS 180

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
              KLGF H S H+QSAL +MYG+C  IESSVAV+ES   R+LECCNSLMTSLLH G I+
Sbjct: 181 CALKLGFGHESSHLQSALINMYGRCLDIESSVAVYESISVRTLECCNSLMTSLLHCGVIE 240

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           D +EMFG MVDE IGLDEVTLSTTLKA+S+  S +L  CRLLHCCAIKSGFE +  VSCS
Sbjct: 241 DVIEMFGLMVDERIGLDEVTLSTTLKAISI-CSPDLSRCRLLHCCAIKSGFEFSSVVSCS 299

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           LMD+YSRCGH+ELS +VFE+I SP V+CFTSI+NGY+RNG+G+E +++L++MIQRGL PD
Sbjct: 300 LMDSYSRCGHVELSWKVFEEIYSPGVICFTSIINGYARNGLGKEGVEILKMMIQRGLKPD 359

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           KVTFLC L GCNHSG+V+EG+ VF  MK++YGI+ D +HYSCM+D+LGRAG+LD+AE+L+
Sbjct: 360 KVTFLCALIGCNHSGLVEEGRFVFELMKTLYGIEPDWKHYSCMVDLLGRAGLLDEAEKLI 419

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           Q+ P   + ++WSS+LRSCRVH NE IGR++   L++LE  D A+  Q SNFYS+IG+FE
Sbjct: 420 QKVPEKVNGVIWSSMLRSCRVHRNETIGRKIVKWLVDLEAEDPAILLQASNFYSDIGDFE 479

Query: 638 VSMQIRETALARKL 651
            S Q+RE AL +K+
Sbjct: 480 TSKQLREIALTKKV 493



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 212/452 (46%), Gaps = 12/452 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A KLFDE+P R++  +NLL+  C + R  ++    + +M   G++ +  TFS +L    N
Sbjct: 7   ALKLFDELPQRNIAVWNLLLRWCCELRQFEKLQGFFSKMQLEGLEPNGLTFSYLLRGFGN 66

Query: 123 AGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
                EG Q+H R + +G    N+++ + LVD Y        A   F+ +P  N+ +WN 
Sbjct: 67  EKLLDEGKQLHNRAVKIGLVESNIFVQNALVDFYADCRSLTEAKXAFECIPLDNVISWNS 126

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++  + ++    E L ++++M+  G  P+  S   ++   S    +  GKQ+ S  +KLG
Sbjct: 127 IVAVYADVGFLSESLELFSRMQFWGKRPSIRSLMALLNLSSRTRNIQLGKQIQSCALKLG 186

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
           +   +  + +AL++ Y  C  +  +   ++ I V  +   NS+++      +I D +E+F
Sbjct: 187 FGHESSHLQSALINMYGRCLDIESSVAVYESISVRTLECCNSLMTSLLHCGVIEDVIEMF 246

Query: 302 FRM---QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
             M   ++     ++ + ++ ++  S   ++   + +H    K GF+  SV V  +L D 
Sbjct: 247 GLMVDERIGLDEVTLSTTLKAISICS--PDLSRCRLLHCCAIKSGFEFSSV-VSCSLMDS 303

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y +C  +E S  VFE      + C  S++     +G  K+ VE+   M+  G+  D+VT 
Sbjct: 304 YSRCGHVELSWKVFEEIYSPGVICFTSIINGYARNGLGKEGVEILKMMIQRGLKPDKVTF 363

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
              L   + S     G   +        G E +      ++D   R G ++ + ++ +K+
Sbjct: 364 LCALIGCNHSGLVEEGR-FVFELMKTLYGIEPDWKHYSCMVDLLGRAGLLDEAEKLIQKV 422

Query: 479 PSP-NVVCFTSIMNG---YSRNGMGREALDML 506
           P   N V ++S++     +    +GR+ +  L
Sbjct: 423 PEKVNGVIWSSMLRSCRVHRNETIGRKIVKWL 454



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 39/149 (26%), Positives = 75/149 (50%), Gaps = 3/149 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D + + GH+  + K+F+E+ +  ++ +  +I+G  +    K+ + +   M+  G+K   
Sbjct: 301 MDSYSRCGHVELSWKVFEEIYSPGVICFTSIINGYARNGLGKEGVEILKMMIQRGLKPDK 360

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            TF   L  C+++G   EG  +   + +L G   +    S +VDL  R G    A  L  
Sbjct: 361 VTFLCALIGCNHSGLVEEGRFVFELMKTLYGIEPDWKHYSCMVDLLGRAGLLDEAEKLIQ 420

Query: 170 ELPER-NLATWNLMLRAFCELSRPDEVLR 197
           ++PE+ N   W+ MLR+ C + R + + R
Sbjct: 421 KVPEKVNGVIWSSMLRS-CRVHRNETIGR 448


>gi|218198855|gb|EEC81282.1| hypothetical protein OsI_24392 [Oryza sativa Indica Group]
          Length = 1349

 Score =  497 bits (1279), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/595 (42%), Positives = 387/595 (65%), Gaps = 6/595 (1%)

Query: 70   MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
            M  RD+ + N +I+G  +     +A  +Y  MV+ GI+E+  TFS++L VCS      E 
Sbjct: 757  MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCST----YEA 812

Query: 130  IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            +Q+H RVL+LG   N ++GS LV+ YM +     +L LF ELP +N A  N++LR    L
Sbjct: 813  LQLHGRVLALGLCCNPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNL 872

Query: 190  SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIF 248
               +E++  +  M+ + +E NGLS+CY ++GC   G  L++G+QLH  V+K GW+  NIF
Sbjct: 873  KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 932

Query: 249  VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
            ++N+LVD YSA G  ++  K+ + I  +DVISWNSI+S+YAD   + +A+    +M    
Sbjct: 933  LSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHG 992

Query: 309  KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            K PSIRSFV  L  + +TG+   G QIHG V KLGF   SVHVQ+ L DMYGKC   + S
Sbjct: 993  KMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHS 1052

Query: 369  VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            +A+F   P  +LECCNSL+TS L       A+E+   M+ EG+  D+VT S T+KA+S+S
Sbjct: 1053 LAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLS 1112

Query: 429  ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            AS +L SC++LH C +K GFE ++AV  SL+ AY+  G +  SH +FE +  PNV+CFT+
Sbjct: 1113 ASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTA 1172

Query: 489  IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
            I++  +R G G  A+++ + M+  GL PD VTFLC +AGC+ +GM +EG+LV   M++  
Sbjct: 1173 IISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASR 1232

Query: 549  GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
             +D D +H++CM+++L R G + +A E+++Q+P       WSSLL+SC+ HG  ++G+R 
Sbjct: 1233 ELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRA 1292

Query: 609  ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            AN+L+++   D A   QVSNF+++IG+ E +++I+E    +++ +  GHSLIEV+
Sbjct: 1293 ANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVS 1346



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 154/571 (26%), Positives = 272/571 (47%), Gaps = 80/571 (14%)

Query: 164 ALDLFDELPERNL---ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
           AL LFD +P              RA      PD    ++ +M+   V P+G +F ++ + 
Sbjct: 56  ALHLFDRMPASTFLFDTALRACFRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKC 115

Query: 221 CSIG---MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
            S      LL     LH+  ++        FVAN+L+  Y+  G   + +++FD IPV D
Sbjct: 116 SSSSRPRALL--CTMLHAACLRTMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKD 173

Query: 278 -------------------------------VISWNSIVSIYADYDLIFDALELFFRMQL 306
                                          VISW S+++ Y+  D   +A++ F  M  
Sbjct: 174 AVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLS 233

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC---- 362
               P   + +  L+  S+  ++  G  +H  V + G    S ++  AL DMY KC    
Sbjct: 234 EGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSM-SENLVVALIDMYAKCGDFG 292

Query: 363 ------------------NVI----------ESSVAVFESAPGRSLECCNSLMTSLLHSG 394
                             N I          + + ++F+    R +   NS++T  +HSG
Sbjct: 293 HAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSG 352

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESN 451
            +++A+ +F  M    + +D  T+ + L     SA A+LG+    R LH C      E++
Sbjct: 353 QLREALLLFMNMRRHDLRVDNFTVVSLL-----SACASLGALPQGRALHACIELRLVETD 407

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           I +  +L+D Y +CG +  +  VF+++   +V  +T+++ G + NGMG+  L+    M  
Sbjct: 408 IYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRC 467

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G  P+ V+++ VL  C+HS ++ EG+L F+ M+ +Y I    +HY CMID+LGR+G+LD
Sbjct: 468 DGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLD 527

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +A +L++  P   + ++W+S+L +CRVH    + +  A  L+++EP + AVY Q+ N   
Sbjct: 528 EAMDLVKTMPMQPNSVIWASILSACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICI 587

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           +  ++E + +IR     R++ +  G+S + V
Sbjct: 588 DSRKWEDASKIRMLMEERQVKKTAGYSSVTV 618



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 4/264 (1%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           S N  ID + K GH++ A+ LFD+M  RD++T+N +I+G       ++AL L+  M  H 
Sbjct: 309 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 368

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           ++    T  S+LS C++ G   +G  +H  +       ++YIG+ L+D+YM+ G    A 
Sbjct: 369 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 428

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +F  + +R++  W  M+            L  + +M+ +G +PN +S+  ++  CS   
Sbjct: 429 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSC 488

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSI 284
           LL+EG+     +  L  +   I     ++D     G L EA      +P+  + + W SI
Sbjct: 489 LLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASI 548

Query: 285 VS---IYADYDLIFDALELFFRMQ 305
           +S   ++   DL   A E   +++
Sbjct: 549 LSACRVHKRIDLAQCAAEHLLKIE 572



 Score =  103 bits (258), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 158/369 (42%), Gaps = 33/369 (8%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +  S    I    K G L+ A+ L  + P RD++++  LI+   +    K+A+  + 
Sbjct: 170 PVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFK 229

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M+S GI     T   VLS CS       G  +H  V   G  ++  +   L+D+Y + G
Sbjct: 230 NMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVALIDMYAKCG 289

Query: 160 PSVRALDLFDELPE-RNLATWNLMLRAFCELSRPD------------------------- 193
               A ++FD +   R   +WN ++  +C+    D                         
Sbjct: 290 DFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYI 349

Query: 194 ------EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 E L ++  M+   +  +  +   ++  C+    L +G+ LH+  I+L  V+ +I
Sbjct: 350 HSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHA-CIELRLVETDI 408

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           ++  AL+D Y  CG + EA   F  +   DV +W ++++  A   +    LE F++M+  
Sbjct: 409 YIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCD 468

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             +P+  S++  L   S +  +  G+     +  L   H  +     + D+ G+  +++ 
Sbjct: 469 GFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDE 528

Query: 368 SVAVFESAP 376
           ++ + ++ P
Sbjct: 529 AMDLVKTMP 537



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 145/278 (52%), Gaps = 4/278 (1%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            NI+ SN  +D +   G      K  +++ + D++++N ++S      H K+A+Y   +M+
Sbjct: 930  NIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQML 989

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPS 161
             HG   S  +F S+L++    G +  G+QIH  V  LGF   ++++ + L+D+Y +    
Sbjct: 990  WHGKMPSIRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCF 1049

Query: 162  VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              +L +F+E+P   L   N ++ +    +  D  L + + M  EGV P+ ++F   ++  
Sbjct: 1050 DHSLAIFNEIPSIALECCNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAI 1109

Query: 222  SIGM--LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            S+     L   + LHS ++KLG+ ++++ V ++L+  Y+  G L  +   F+ +   +VI
Sbjct: 1110 SLSASPSLTSCQMLHSCLVKLGF-EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVI 1168

Query: 280  SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
             + +I+S  A Y     A+ELF +M     +P   +F+
Sbjct: 1169 CFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFL 1206



 Score = 97.1 bits (240), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 102/469 (21%), Positives = 199/469 (42%), Gaps = 37/469 (7%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            N +  +  ++ ++     +++  LF E+P ++    N+++ G G  +  ++ +  + +M 
Sbjct: 827  NPFVGSALVNHYMHVESPHASLSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMR 886

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTE-GIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGP 160
               ++ +  ++   +  C   G + E G Q+H  VL  G+   N+++ + LVDLY  +G 
Sbjct: 887  RQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGD 946

Query: 161  SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
            SV  +   +++   ++ +WN +L  + +     E +    +M   G  P+  SF  ++  
Sbjct: 947  SVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSIRSFVSLLAL 1006

Query: 221  CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                     G Q+H  V KLG+   ++ V   L+D Y  C     +   F+ IP   +  
Sbjct: 1007 SGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALEC 1066

Query: 281  WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG--KQIHGY 338
             NS+++     ++   ALE+   M +    P   +F   +   S + +      + +H  
Sbjct: 1067 CNSLITSSLRCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSC 1126

Query: 339  VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            + KLGF+   + V S+L   Y     + SS  +FE     ++ C  +++++    G+   
Sbjct: 1127 LVKLGFEM-DMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGAR 1185

Query: 399  AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            A+E+F  MV  G+  D VT    +                   C     FE    V    
Sbjct: 1186 AMELFDQMVSSGLKPDNVTFLCAIAG-----------------CDQAGMFEEGRLV---- 1224

Query: 459  MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
                     IEL     E    P+   F  ++N  SR+G  +EA++M+E
Sbjct: 1225 ---------IELMRASREL--DPDERHFACMVNLLSRDGFVKEAMEMME 1262



 Score = 92.8 bits (229), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 109/513 (21%), Positives = 199/513 (38%), Gaps = 92/513 (17%)

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFR------HPKQALYLYDEMVSHGIKESAST 112
           HL  A  LFD MPA   + ++  +  C  FR       P     L+  M    ++    T
Sbjct: 52  HLRYALHLFDRMPASTFL-FDTALRAC--FRAGTSSGDPDIPFVLFRRMRRAAVRPDGFT 108

Query: 113 FSSVLSVCSNA---GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           F  +    S++         +   C    L      ++ + L+ +Y  +G +      FD
Sbjct: 109 FHFLFKCSSSSRPRALLCTMLHAACLRTMLPSAAP-FVANSLIHMYTELGLAGDVRRAFD 167

Query: 170 ELPERNLATWNL-------------------------------MLRAFCELSRPDEVLRM 198
           E+P ++  +W +                               ++ A+    R  E +  
Sbjct: 168 EIPVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDC 227

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFY 257
           +  M +EG+ P+ ++   ++  CS    L+ G  LHS V + G  +  N+ VA  L+D Y
Sbjct: 228 FKNMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHSLVKEKGMSMSENLVVA--LIDMY 285

Query: 258 SACGSLIEAKKSFDFI--------------------------------PVDDVISWNSIV 285
           + CG    A++ FD +                                 V D+I++NS++
Sbjct: 286 AKCGDFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMI 345

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           + Y     + +AL LF  M+    R    + V  L+  +  G +  G+ +H  + +L   
Sbjct: 346 TGYIHSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHACI-ELRLV 404

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
              +++ +AL DMY KC  +  +  VF+    R +    +++  L  +G  K  +E F  
Sbjct: 405 ETDIYIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQ 464

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLG-----SCRLLHCCAIKSGFESNIAVSCSLMD 460
           M  +G   + V+    L A S S   N G       R+L+           I     ++D
Sbjct: 465 MRCDGFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILY------NIHPQIEHYGCMID 518

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
              R G ++ +  + + +P  PN V + SI++ 
Sbjct: 519 LLGRSGLLDEAMDLVKTMPMQPNSVIWASILSA 551



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 17   APTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMV 76
            +P+ TS   L S L+   +     ++++   +  I  +  +G L+S+  +F+ +   +++
Sbjct: 1114 SPSLTSCQMLHSCLVKLGF-----EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVI 1168

Query: 77   TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG-IQIHCR 135
             +  +IS C ++    +A+ L+D+MVS G+K    TF   ++ C  AG + EG + I   
Sbjct: 1169 CFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELM 1228

Query: 136  VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA-TWNLMLRA 185
              S     +    + +V+L  R G    A+++ ++ P R+    W+ +L++
Sbjct: 1229 RASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQS 1279



 Score = 49.3 bits (116), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 5/178 (2%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPN-PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+ +L   C S+  L     L +  +    + +IY     +D ++K G +N A  +F  M
Sbjct: 375 TVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRM 434

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             RD+  +  +I+G       K  L  + +M   G + +  ++ +VL+ CS++    EG 
Sbjct: 435 GKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEG- 493

Query: 131 QIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           +++   + + + ++  I     ++DL  R G    A+DL   +P + N   W  +L A
Sbjct: 494 RLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSA 551


>gi|222636196|gb|EEE66328.1| hypothetical protein OsJ_22569 [Oryza sativa Japonica Group]
          Length = 1287

 Score =  496 bits (1278), Expect = e-137,   Method: Compositional matrix adjust.
 Identities = 255/595 (42%), Positives = 387/595 (65%), Gaps = 6/595 (1%)

Query: 70   MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
            M  RD+ + N +I+G  +     +A  +Y  MV+ GI+E+  TFS++L VCS      E 
Sbjct: 695  MAVRDVASLNRMITGFIRDGLADRARAVYRWMVASGIRETPHTFSTILGVCST----YEA 750

Query: 130  IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            +Q+H RVL+LG   N ++GS LV+ YM +     AL LF ELP +N A  N++LR    L
Sbjct: 751  LQLHGRVLALGLCCNPFVGSALVNHYMHVESPHAALSLFRELPLQNTAMCNVVLRGLGNL 810

Query: 190  SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIF 248
               +E++  +  M+ + +E NGLS+CY ++GC   G  L++G+QLH  V+K GW+  NIF
Sbjct: 811  KLTEELICCFLDMRRQYLELNGLSYCYAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIF 870

Query: 249  VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
            ++N+LVD YSA G  ++  K+ + I  +DVISWNSI+S+YAD   + +A+    +M    
Sbjct: 871  LSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQMLWHG 930

Query: 309  KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            K PS+RSFV  L  + +TG+   G QIHG V KLGF   SVHVQ+ L DMYGKC   + S
Sbjct: 931  KMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHS 990

Query: 369  VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            +A+F   P  +LECCNSL+TS L       A+E+   M+ EG+  D+VT S T+KA+S+S
Sbjct: 991  LAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAISLS 1050

Query: 429  ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            AS +L SC++LH C +K GFE ++AV  SL+ AY+  G +  SH +FE +  PNV+CFT+
Sbjct: 1051 ASPSLTSCQMLHSCLVKLGFEMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTA 1110

Query: 489  IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
            I++  +R G G  A+++ + M+  GL PD VTFLC +AGC+ +GM +EG+LV   M++  
Sbjct: 1111 IISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELMRASR 1170

Query: 549  GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
             +D D +H++CM+++L R G + +A E+++Q+P       WSSLL+SC+ HG  ++G+R 
Sbjct: 1171 ELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQSCKAHGENVLGKRA 1230

Query: 609  ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            AN+L+++   D A   QVSNF+++IG+ E +++I+E    +++ +  GHSLIEV+
Sbjct: 1231 ANMLIDVGRKDPATTLQVSNFFNDIGDRETALRIKEMTNVKEVKKS-GHSLIEVS 1284



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 148/549 (26%), Positives = 265/549 (48%), Gaps = 77/549 (14%)

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG---MLLDEGKQLHSHVIK 239
            RA      PD    ++ +M+   V P+G +F ++ +  S      LL     LH+  ++
Sbjct: 16  FRAGTSSGDPDIPFVLFRRMRRAAVRPDGFTFHFLFKCSSSSRPRALL--CTMLHAACLR 73

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD---------------------- 277
                   FVAN+L+  Y+  G   + +++FD IPV D                      
Sbjct: 74  TMLPSAAPFVANSLIHMYTELGLAGDVRRAFDEIPVKDAVSWTMVISGLAKMGMLSDARL 133

Query: 278 ---------VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
                    VISW S+++ Y+  D   +A++ F  M      P   + +  L+  S+  +
Sbjct: 134 LLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIGVLSACSQLKD 193

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC----------------------NVI- 365
           +  G  +H  V + G    S ++  AL DMY KC                      N I 
Sbjct: 194 LELGCSLHLLVKEKGMSM-SENLVVALIDMYAKCGDFGHAREVFDAVGRGRRPQSWNAII 252

Query: 366 ---------ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
                    + + ++F+    R +   NS++T  +HSG +++A+ +F  M    + +D  
Sbjct: 253 DGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHDLRVDNF 312

Query: 417 TLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           T+ + L     SA A+LG+    R LH C      E++I +  +L+D Y +CG +  +  
Sbjct: 313 TVVSLL-----SACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATI 367

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VF+++   +V  +T+++ G + NGMG+  L+    M   G  P+ V+++ VL  C+HS +
Sbjct: 368 VFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCL 427

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           + EG+L F+ M+ +Y I    +HY CMID+LGR+G+LD+A +L++  P   + ++W+S+L
Sbjct: 428 LNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASIL 487

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
            +CRVH    + +  A  L+++EP + AVY Q+ N   +  ++E + +IR     R++ +
Sbjct: 488 SACRVHKRIDLAQCAAEHLLKIEPDEDAVYVQLYNICIDSRKWEDASKIRMLMEERQVKK 547

Query: 654 DIGHSLIEV 662
             G+S + V
Sbjct: 548 TAGYSSVTV 556



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 72/264 (27%), Positives = 130/264 (49%), Gaps = 4/264 (1%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           S N  ID + K GH++ A+ LFD+M  RD++T+N +I+G       ++AL L+  M  H 
Sbjct: 247 SWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMRRHD 306

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           ++    T  S+LS C++ G   +G  +H  +       ++YIG+ L+D+YM+ G    A 
Sbjct: 307 LRVDNFTVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEAT 366

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +F  + +R++  W  M+            L  + +M+ +G +PN +S+  ++  CS   
Sbjct: 367 IVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSC 426

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSI 284
           LL+EG+     +  L  +   I     ++D     G L EA      +P+  + + W SI
Sbjct: 427 LLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASI 486

Query: 285 VS---IYADYDLIFDALELFFRMQ 305
           +S   ++   DL   A E   +++
Sbjct: 487 LSACRVHKRIDLAQCAAEHLLKIE 510



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 80/369 (21%), Positives = 158/369 (42%), Gaps = 33/369 (8%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +  S    I    K G L+ A+ L  + P RD++++  LI+   +    K+A+  + 
Sbjct: 108 PVKDAVSWTMVISGLAKMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFK 167

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M+S GI     T   VLS CS       G  +H  V   G  ++  +   L+D+Y + G
Sbjct: 168 NMLSEGIAPDDVTVIGVLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCG 227

Query: 160 PSVRALDLFDELPE-RNLATWNLMLRAFCELSRPD------------------------- 193
               A ++FD +   R   +WN ++  +C+    D                         
Sbjct: 228 DFGHAREVFDAVGRGRRPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYI 287

Query: 194 ------EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 E L ++  M+   +  +  +   ++  C+    L +G+ LH+  I+L  V+ +I
Sbjct: 288 HSGQLREALLLFMNMRRHDLRVDNFTVVSLLSACASLGALPQGRALHA-CIELRLVETDI 346

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           ++  AL+D Y  CG + EA   F  +   DV +W ++++  A   +    LE F++M+  
Sbjct: 347 YIGTALLDMYMKCGRVNEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCD 406

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             +P+  S++  L   S +  +  G+     +  L   H  +     + D+ G+  +++ 
Sbjct: 407 GFQPNPVSYIAVLTACSHSCLLNEGRLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDE 466

Query: 368 SVAVFESAP 376
           ++ + ++ P
Sbjct: 467 AMDLVKTMP 475



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 74/278 (26%), Positives = 145/278 (52%), Gaps = 4/278 (1%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            NI+ SN  +D +   G      K  +++ + D++++N ++S      H K+A+Y   +M+
Sbjct: 868  NIFLSNSLVDLYSAIGDSVDTVKALNDILSEDVISWNSILSMYADRGHMKEAVYYLKQML 927

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPS 161
             HG   S  +F S+L++    G +  G+QIH  V  LGF   ++++ + L+D+Y +    
Sbjct: 928  WHGKMPSVRSFVSLLALSGKTGDWQLGVQIHGIVHKLGFSCSSVHVQTTLIDMYGKCCCF 987

Query: 162  VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              +L +F+E+P   L   N ++ +    +  D  L + + M  EGV P+ ++F   ++  
Sbjct: 988  DHSLAIFNEIPSIALECCNSLITSSLGCNMFDAALEILHCMIVEGVTPDDVTFSATMKAI 1047

Query: 222  SIGM--LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            S+     L   + LHS ++KLG+ ++++ V ++L+  Y+  G L  +   F+ +   +VI
Sbjct: 1048 SLSASPSLTSCQMLHSCLVKLGF-EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVI 1106

Query: 280  SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
             + +I+S  A Y     A+ELF +M     +P   +F+
Sbjct: 1107 CFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFL 1144



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 105/457 (22%), Positives = 195/457 (42%), Gaps = 39/457 (8%)

Query: 55   VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            V+S H  +A  LF E+P ++    N+++ G G  +  ++ +  + +M    ++ +  ++ 
Sbjct: 779  VESPH--AALSLFRELPLQNTAMCNVVLRGLGNLKLTEELICCFLDMRRQYLELNGLSYC 836

Query: 115  SVLSVCSNAGFYTE-GIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
              +  C   G + E G Q+H  VL  G+   N+++ + LVDLY  +G SV  +   +++ 
Sbjct: 837  YAMKGCYQNGEWLEQGRQLHGVVLKAGWIPSNIFLSNSLVDLYSAIGDSVDTVKALNDIL 896

Query: 173  ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
              ++ +WN +L  + +     E +    +M   G  P+  SF  ++           G Q
Sbjct: 897  SEDVISWNSILSMYADRGHMKEAVYYLKQMLWHGKMPSVRSFVSLLALSGKTGDWQLGVQ 956

Query: 233  LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            +H  V KLG+   ++ V   L+D Y  C     +   F+ IP   +   NS+++     +
Sbjct: 957  IHGIVHKLGFSCSSVHVQTTLIDMYGKCCCFDHSLAIFNEIPSIALECCNSLITSSLGCN 1016

Query: 293  LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG--KQIHGYVTKLGFDHGSVH 350
            +   ALE+   M +    P   +F   +   S + +      + +H  + KLGF+   + 
Sbjct: 1017 MFDAALEILHCMIVEGVTPDDVTFSATMKAISLSASPSLTSCQMLHSCLVKLGFEM-DMA 1075

Query: 351  VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
            V S+L   Y     + SS  +FE     ++ C  +++++    G+   A+E+F  MV  G
Sbjct: 1076 VCSSLITAYACAGQLSSSHLIFEGLLDPNVICFTAIISACARYGDGARAMELFDQMVSSG 1135

Query: 411  IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
            +  D VT    +                   C     FE    V             IEL
Sbjct: 1136 LKPDNVTFLCAIAG-----------------CDQAGMFEEGRLV-------------IEL 1165

Query: 471  SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
                 E    P+   F  ++N  SR+G  +EA++M+E
Sbjct: 1166 MRASREL--DPDERHFACMVNLLSRDGFVKEAMEMME 1200



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 88/373 (23%), Positives = 162/373 (43%), Gaps = 44/373 (11%)

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG----- 211
           +MG    A  L  + P R++ +W  ++ A+    R  E +  +  M +EG+ P+      
Sbjct: 124 KMGMLSDARLLLAQAPVRDVISWTSLIAAYSRADRAKEAVDCFKNMLSEGIAPDDVTVIG 183

Query: 212 -LSFCYMVR----GCSIGMLLDEGKQLHSHVIKLGWVDV-----------NIFVA----- 250
            LS C  ++    GCS+ +L+ E     S  + +  +D+            +F A     
Sbjct: 184 VLSACSQLKDLELGCSLHLLVKEKGMSMSENLVVALIDMYAKCGDFGHAREVFDAVGRGR 243

Query: 251 -----NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
                NA++D Y   G +  A+  FD + V D+I++NS+++ Y     + +AL LF  M+
Sbjct: 244 RPQSWNAIIDGYCKHGHVDVARSLFDQMEVRDIITFNSMITGYIHSGQLREALLLFMNMR 303

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
               R    + V  L+  +  G +  G+ +H  + +L      +++ +AL DMY KC  +
Sbjct: 304 RHDLRVDNFTVVSLLSACASLGALPQGRALHACI-ELRLVETDIYIGTALLDMYMKCGRV 362

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  VF+    R +    +++  L  +G  K  +E F  M  +G   + V+    L A 
Sbjct: 363 NEATIVFQRMGKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTAC 422

Query: 426 SVSASANLG-----SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP- 479
           S S   N G       R+L+           I     ++D   R G ++ +  + + +P 
Sbjct: 423 SHSCLLNEGRLYFDEMRILY------NIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPM 476

Query: 480 SPNVVCFTSIMNG 492
            PN V + SI++ 
Sbjct: 477 QPNSVIWASILSA 489



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 40/171 (23%), Positives = 86/171 (50%), Gaps = 7/171 (4%)

Query: 17   APTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMV 76
            +P+ TS   L S L+   +     ++++   +  I  +  +G L+S+  +F+ +   +++
Sbjct: 1052 SPSLTSCQMLHSCLVKLGF-----EMDMAVCSSLITAYACAGQLSSSHLIFEGLLDPNVI 1106

Query: 77   TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG-IQIHCR 135
             +  +IS C ++    +A+ L+D+MVS G+K    TF   ++ C  AG + EG + I   
Sbjct: 1107 CFTAIISACARYGDGARAMELFDQMVSSGLKPDNVTFLCAIAGCDQAGMFEEGRLVIELM 1166

Query: 136  VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA-TWNLMLRA 185
              S     +    + +V+L  R G    A+++ ++ P R+    W+ +L++
Sbjct: 1167 RASRELDPDERHFACMVNLLSRDGFVKEAMEMMEQSPLRHYTKAWSSLLQS 1217



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 42/178 (23%), Positives = 82/178 (46%), Gaps = 5/178 (2%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPN-PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+ +L   C S+  L     L +  +    + +IY     +D ++K G +N A  +F  M
Sbjct: 313 TVVSLLSACASLGALPQGRALHACIELRLVETDIYIGTALLDMYMKCGRVNEATIVFQRM 372

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             RD+  +  +I+G       K  L  + +M   G + +  ++ +VL+ CS++    EG 
Sbjct: 373 GKRDVHAWTAMIAGLAFNGMGKAGLEYFYQMRCDGFQPNPVSYIAVLTACSHSCLLNEG- 431

Query: 131 QIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           +++   + + + ++  I     ++DL  R G    A+DL   +P + N   W  +L A
Sbjct: 432 RLYFDEMRILYNIHPQIEHYGCMIDLLGRSGLLDEAMDLVKTMPMQPNSVIWASILSA 489


>gi|242096974|ref|XP_002438977.1| hypothetical protein SORBIDRAFT_10g029310 [Sorghum bicolor]
 gi|241917200|gb|EER90344.1| hypothetical protein SORBIDRAFT_10g029310 [Sorghum bicolor]
          Length = 642

 Score =  469 bits (1208), Expect = e-129,   Method: Compositional matrix adjust.
 Identities = 243/591 (41%), Positives = 380/591 (64%), Gaps = 6/591 (1%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           D+++ N +I+G  +     +AL +Y  MV+ G +E+  TFS++LS C++     EG+Q+H
Sbjct: 54  DVISLNRMITGFIRDGIGNRALVVYKWMVASGYRETPHTFSAILSACNSC----EGLQLH 109

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            RVL+LG   N ++ S LV+LYMR+     AL L++E+P ++    N++L  FC L   +
Sbjct: 110 GRVLALGLCSNPFVRSALVNLYMRVEMPCAALLLYNEMPLQSTVMSNVVLGGFCNLKLAE 169

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           ++L     M+  G+E NGLS+CY ++ C      L +G+QLH  V+K GWV  NIF++N+
Sbjct: 170 DLLCSLLDMRRRGLELNGLSYCYAMKVCYQDEEWLQQGRQLHGVVLKAGWVPSNIFLSNS 229

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           LVD YSA G L++AK S D IP +DVISWNSIVS+ A    + +A +   +M    K PS
Sbjct: 230 LVDLYSAIGDLVDAKNSLDGIPSEDVISWNSIVSVCASKGRMKEATDYLRQMLWHGKMPS 289

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
           +RSFV     + +TG++  G Q+HG   KLGF    VHVQ+AL +MYGKC   + S+A+F
Sbjct: 290 VRSFVGLFASSGQTGDLGVGVQMHGIALKLGFCWSRVHVQTALINMYGKCRSFDCSLAIF 349

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
              P  +LECCNS +TS +        +E+   M  EG+  D VTLS TLKA+S+S S +
Sbjct: 350 NEIPSLALECCNSTITSSIRCKVFHSTLEVLYCMTVEGVMPDNVTLSATLKAISLSVSPS 409

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
           L SC++LH    K GFE+++AV  SL+ AY+R GH+  SH +F+ +  PNVVCFTS+++ 
Sbjct: 410 LISCQMLHSWVFKLGFETDMAVCSSLISAYARAGHLSSSHLIFKSLQDPNVVCFTSLISA 469

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552
            +R G G + +++L  M+ RGL PD VTFLC +AGC+ +G+++EG+LV   M++   +  
Sbjct: 470 CARYGDGAKGVELLNNMVSRGLKPDDVTFLCAIAGCDQAGLIEEGRLVIELMRATRELGP 529

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL 612
           D +H +CM+++LGR G +++A ++++ +P       WSSL++SC+ HG   +G+R AN+L
Sbjct: 530 DERHLACMVNLLGRDGFVEEAMKMMEHSPLRHYTKAWSSLVQSCKAHGENALGKRAANML 589

Query: 613 MELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +++   D A   QVS ++ EIG+ E + +I+  A  +++ ++ GHS +E++
Sbjct: 590 IDVGRKDAATNLQVSRYFYEIGDGENASRIKAMASGQQV-KESGHSSVEIS 639



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 159/342 (46%), Gaps = 10/342 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI+ SN  +D +   G L  AK   D +P+ D++++N ++S C      K+A     +M+
Sbjct: 223 NIFLSNSLVDLYSAIGDLVDAKNSLDGIPSEDVISWNSIVSVCASKGRMKEATDYLRQML 282

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSPLVDLYMRMGPS 161
            HG   S  +F  + +     G    G+Q+H   L LGF  + +++ + L+++Y +    
Sbjct: 283 WHGKMPSVRSFVGLFASSGQTGDLGVGVQMHGIALKLGFCWSRVHVQTALINMYGKCRSF 342

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +L +F+E+P   L   N  + +          L +   M  EGV P+ ++    ++  
Sbjct: 343 DCSLAIFNEIPSLALECCNSTITSSIRCKVFHSTLEVLYCMTVEGVMPDNVTLSATLKAI 402

Query: 222 SIGM--LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           S+ +   L   + LHS V KLG+ + ++ V ++L+  Y+  G L  +   F  +   +V+
Sbjct: 403 SLSVSPSLISCQMLHSWVFKLGF-ETDMAVCSSLISAYARAGHLSSSHLIFKSLQDPNVV 461

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK---QIH 336
            + S++S  A Y      +EL   M     +P   +F+  +    + G +  G+   ++ 
Sbjct: 462 CFTSLISACARYGDGAKGVELLNNMVSRGLKPDDVTFLCAIAGCDQAGLIEEGRLVIELM 521

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
               +LG D   +   + + ++ G+   +E ++ + E +P R
Sbjct: 522 RATRELGPDERHL---ACMVNLLGRDGFVEEAMKMMEHSPLR 560


>gi|413943192|gb|AFW75841.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 597

 Score =  463 bits (1192), Expect = e-127,   Method: Compositional matrix adjust.
 Identities = 243/597 (40%), Positives = 374/597 (62%), Gaps = 7/597 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M A D+++ N +I+G  +     +AL +Y  MV+ G++E+  TFS+VL  C++     EG
Sbjct: 1   MAAWDVISLNRMITGFIRDGTSNRALVVYKWMVASGLRETPHTFSAVLGACNSC----EG 56

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           +Q+H RVL+LG   N ++ S LV+LYMR+     AL L+DE+P ++ A  N +L   C L
Sbjct: 57  LQLHGRVLALGLRSNPFVMSALVNLYMRVETPCAALLLYDEMPLQSTAMSNAVLGGLCNL 116

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM-LLDEGKQLHSHVIKLGWVDVNIF 248
              +++ R    M+  G+E NGLS+CY ++ C      L++G+QLH  V+K GWV  NIF
Sbjct: 117 KLAEDLFRSLLDMRRRGLELNGLSYCYAMKACYQDEDWLEQGRQLHGVVLKAGWVPSNIF 176

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           ++N+LVD Y+A G L++AK S D IP +DVISWNSIVS+ A      +A     +M    
Sbjct: 177 LSNSLVDLYAATGDLVDAKSSLDDIPSEDVISWNSIVSVCASKGRTKEATGYLRQMLWHG 236

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
           K PS+RSFV     + +TG++  G Q+HG   KLGF   S HVQ+AL  MYG C   +  
Sbjct: 237 KTPSVRSFVGLFALSGQTGHLQVGVQMHGIALKLGFSWSSAHVQTALISMYGNCCHFDCC 296

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           +A+F   P  +LEC N+++TS +       A+E+   MV EG+  D VTLS T+KA+S+S
Sbjct: 297 LAIFNETPSLALECYNAMITSSIGCKVFHSALEVLYCMVVEGVMPDNVTLSATMKAISLS 356

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           AS +L SC++LH    K GFE+++ V  SL+ AY+R G +  S  VFE + SPNVVCFTS
Sbjct: 357 ASPSLISCQMLHSWVFKLGFEADMVVCSSLISAYARAGQVHSSRSVFESLRSPNVVCFTS 416

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           +++  +R+G G + +++L  M+ RGL PD VTFLC + GC+ +G+++EG+LVF  M++  
Sbjct: 417 MISACARHGDGAKGVELLREMVCRGLKPDDVTFLCAITGCDQAGLIEEGRLVFEFMRATR 476

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELL--QQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            +  D +H +CM+++LGR G +++A +++  Q +P       WSSL++SC+ HG + +GR
Sbjct: 477 ELGPDERHLACMVNLLGRDGFVEEAMKVMMEQHSPLRHYTKAWSSLVQSCKAHGEDALGR 536

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           R A+ L+++   D A   QVS ++ EIG+ E   +I+  A  +++    G S +E+ 
Sbjct: 537 RAADTLVDMGREDAATSLQVSRYFYEIGDGENVSRIKGMASGQRVKEISGRSSVEIG 593



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 86/362 (23%), Positives = 163/362 (45%), Gaps = 7/362 (1%)

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC- 120
           +A  L+DEMP +     N ++ G    +  +       +M   G++ +  ++   +  C 
Sbjct: 90  AALLLYDEMPLQSTAMSNAVLGGLCNLKLAEDLFRSLLDMRRRGLELNGLSYCYAMKACY 149

Query: 121 SNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            +  +  +G Q+H  VL  G+   N+++ + LVDLY   G  V A    D++P  ++ +W
Sbjct: 150 QDEDWLEQGRQLHGVVLKAGWVPSNIFLSNSLVDLYAATGDLVDAKSSLDDIPSEDVISW 209

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++       R  E      +M   G  P+  SF  +         L  G Q+H   +K
Sbjct: 210 NSIVSVCASKGRTKEATGYLRQMLWHGKTPSVRSFVGLFALSGQTGHLQVGVQMHGIALK 269

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           LG+   +  V  AL+  Y  C         F+  P   +  +N++++      +   ALE
Sbjct: 270 LGFSWSSAHVQTALISMYGNCCHFDCCLAIFNETPSLALECYNAMITSSIGCKVFHSALE 329

Query: 300 LFFRMQLCRKRP---SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           + + M +    P   ++ + ++ ++  S + ++   + +H +V KLGF+   V V S+L 
Sbjct: 330 VLYCMVVEGVMPDNVTLSATMKAISL-SASPSLISCQMLHSWVFKLGFEADMV-VCSSLI 387

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
             Y +   + SS +VFES    ++ C  S++++    G+    VE+   MV  G+  D+V
Sbjct: 388 SAYARAGQVHSSRSVFESLRSPNVVCFTSMISACARHGDGAKGVELLREMVCRGLKPDDV 447

Query: 417 TL 418
           T 
Sbjct: 448 TF 449



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 78/337 (23%), Positives = 160/337 (47%), Gaps = 12/337 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI+ SN  +D +  +G L  AK   D++P+ D++++N ++S C      K+A     +M+
Sbjct: 174 NIFLSNSLVDLYAATGDLVDAKSSLDDIPSEDVISWNSIVSVCASKGRTKEATGYLRQML 233

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPS 161
            HG   S  +F  + ++    G    G+Q+H   L LGF   + ++ + L+ +Y      
Sbjct: 234 WHGKTPSVRSFVGLFALSGQTGHLQVGVQMHGIALKLGFSWSSAHVQTALISMYGNCCHF 293

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              L +F+E P   L  +N M+ +          L +   M  EGV P+ ++    ++  
Sbjct: 294 DCCLAIFNETPSLALECYNAMITSSIGCKVFHSALEVLYCMVVEGVMPDNVTLSATMKAI 353

Query: 222 SIGM--LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           S+     L   + LHS V KLG+ + ++ V ++L+  Y+  G +  ++  F+ +   +V+
Sbjct: 354 SLSASPSLISCQMLHSWVFKLGF-EADMVVCSSLISAYARAGQVHSSRSVFESLRSPNVV 412

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            + S++S  A +      +EL  R  +CR  +P   +F+  +    + G +  G+ +  +
Sbjct: 413 CFTSMISACARHGDGAKGVEL-LREMVCRGLKPDDVTFLCAITGCDQAGLIEEGRLVFEF 471

Query: 339 V---TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
           +    +LG D   +   + + ++ G+   +E ++ V 
Sbjct: 472 MRATRELGPDERHL---ACMVNLLGRDGFVEEAMKVM 505


>gi|168056582|ref|XP_001780298.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162668246|gb|EDQ54857.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 986

 Score =  382 bits (981), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/664 (30%), Positives = 357/664 (53%), Gaps = 6/664 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSL-LLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M+   + P  RT  ++   C     +     L +   +     +++     I+  +K G 
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A K+FD +P RD+VT+  +I+G  +    KQA  L+  M   G++     F S+L  
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++     +G ++H R+  +G+   +Y+G+ ++ +Y + G    AL++FD +  RN+ +W
Sbjct: 322 CNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSW 381

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+  F +  R DE    +NKM   G+EPN ++F  ++  CS    L  G+Q+  H+I+
Sbjct: 382 TAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIE 441

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+   +  V  AL+  Y+ CGSL +A + F+ I   +V++WN++++ Y  ++   +AL 
Sbjct: 442 AGY-GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALA 500

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F  +     +P+  +F   LN    + ++  GK +H  + K G +   +HV +AL  M+
Sbjct: 501 TFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE-SDLHVSNALVSMF 559

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
             C  + S+  +F   P R L   N+++   +  G  + A + F  M + GI  D++T +
Sbjct: 560 VNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFT 619

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A +   +   G  R LH    ++ F+ ++ V   L+  Y++CG IE +HQVF K+P
Sbjct: 620 GLLNACASPEALTEG--RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP 677

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             NV  +TS++ GY+++G G+EAL++   M Q G+ PD +TF+  L+ C H+G+++EG  
Sbjct: 678 KKNVYSWTSMITGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLH 737

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F SMK  + I+   +HY CM+D+ GRAG+L++A E + +     D  +W +LL +C+VH
Sbjct: 738 HFQSMKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVH 796

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            N  +  + A   +EL+P D  V+  +SN Y+  G ++   ++R+  L R + +  G S 
Sbjct: 797 LNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSW 856

Query: 660 IEVN 663
           IEV+
Sbjct: 857 IEVD 860



 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 307/560 (54%), Gaps = 6/560 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +I+  N  I+ + K G+  SAK++FD+M  +D+ ++NLL+ G  +    ++A  L+++
Sbjct: 142 QPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQ 201

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           MV   +K    TF S+L+ C++A    +G +++  +L  G+  +L++G+ L++++++ G 
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD LP R+L TW  M+       R  +   ++ +M+ EGV+P+ ++F  ++R 
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L++GK++H+ + ++GW D  I+V  A++  Y+ CGS+ +A + FD +   +V+S
Sbjct: 322 CNHPEALEQGKKVHARMKEVGW-DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W ++++ +A +  I +A   F +M      P+  +F+  L   S    +  G+QI  ++ 
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           + G+      V++AL  MY KC  ++ +  VFE    +++   N+++T+ +      +A+
Sbjct: 441 EAGYGSDD-RVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNAL 499

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
             F  ++ EGI  +  T ++ L     S S  LG  + +H   +K+G ES++ VS +L+ 
Sbjct: 500 ATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG--KWVHFLIMKAGLESDLHVSNALVS 557

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            +  CG +  +  +F  +P  ++V + +I+ G+ ++G  + A D  ++M + G+ PDK+T
Sbjct: 558 MFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKIT 617

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F  +L  C     + EG+ + +++ +    D D    + +I M  + G ++ A ++  + 
Sbjct: 618 FTGLLNACASPEALTEGRRL-HALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKL 676

Query: 581 PGGGDCMMWSSLLRSCRVHG 600
           P   +   W+S++     HG
Sbjct: 677 P-KKNVYSWTSMITGYAQHG 695



 Score =  238 bits (606), Expect = 9e-60,   Method: Compositional matrix adjust.
 Identities = 138/525 (26%), Positives = 277/525 (52%), Gaps = 11/525 (2%)

Query: 82  ISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF 141
           +S  G+F    Q L   D   S  I+    T+S++L +C       +G +I+  +   G 
Sbjct: 85  LSKAGQFNEAMQVLERVD---SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGV 141

Query: 142 GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201
             ++++ + L+++Y + G ++ A  +FD++ E+++ +WNL+L  + +    +E  +++ +
Sbjct: 142 QPDIFMWNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQ 201

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M  + V+P+  +F  M+  C+    +D+G++L++ ++K GW D ++FV  AL++ +  CG
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGW-DTDLFVGTALINMHIKCG 260

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
            + +A K FD +P  D+++W S+++  A +     A  LF RM+    +P   +FV  L 
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
             +    +  GK++H  + ++G+D   ++V +A+  MY KC  +E ++ VF+   GR++ 
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWD-TEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVV 379

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
              +++      G I +A   F  M++ GI  + VT  + L A S  ++   G     H 
Sbjct: 380 SWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHI 439

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             I++G+ S+  V  +L+  Y++CG ++ +H+VFEKI   NVV + +++  Y ++     
Sbjct: 440 --IEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDN 497

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV-FNSMKSVYGIDADRQHYSCM 560
           AL   + +++ G+ P+  TF  +L  C  S  ++ G+ V F  MK+  G+++D    + +
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSNAL 555

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           + M    G L  A+ L    P   D + W++++     HG   + 
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599


>gi|54695180|dbj|BAD67155.1| PpPPR_98 [Physcomitrella patens]
          Length = 986

 Score =  381 bits (979), Expect = e-103,   Method: Compositional matrix adjust.
 Identities = 200/664 (30%), Positives = 357/664 (53%), Gaps = 6/664 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSL-LLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M+   + P  RT  ++   C     +     L +   +     +++     I+  +K G 
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A K+FD +P RD+VT+  +I+G  +    KQA  L+  M   G++     F S+L  
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++     +G ++H R+  +G+   +Y+G+ ++ +Y + G    AL++FD +  RN+ +W
Sbjct: 322 CNHPEALEQGKKVHARMKEVGWDTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVSW 381

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+  F +  R DE    +NKM   G+EPN ++F  ++  CS    L  G+Q+  H+I+
Sbjct: 382 TAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHIIE 441

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+   +  V  AL+  Y+ CGSL +A + F+ I   +V++WN++++ Y  ++   +AL 
Sbjct: 442 AGY-GSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNALA 500

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F  +     +P+  +F   LN    + ++  GK +H  + K G +   +HV +AL  M+
Sbjct: 501 TFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKAGLE-SDLHVSNALVSMF 559

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
             C  + S+  +F   P R L   N+++   +  G  + A + F  M + GI  D++T +
Sbjct: 560 VNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKITFT 619

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A +   +   G  R LH    ++ F+ ++ V   L+  Y++CG IE +HQVF K+P
Sbjct: 620 GLLNACASPEALTEG--RRLHALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKLP 677

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             NV  +TS++ GY+++G G+EAL++   M Q G+ PD +TF+  L+ C H+G+++EG  
Sbjct: 678 KKNVYSWTSMIAGYAQHGRGKEALELFYQMQQEGVKPDWITFVGALSACAHAGLIEEGLH 737

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F SMK  + I+   +HY CM+D+ GRAG+L++A E + +     D  +W +LL +C+VH
Sbjct: 738 HFQSMKE-FNIEPRMEHYGCMVDLFGRAGLLNEAVEFIIKMQVEPDSRVWGALLGACQVH 796

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            N  +  + A   +EL+P D  V+  +SN Y+  G ++   ++R+  L R + +  G S 
Sbjct: 797 LNVELAEKAAQKKLELDPNDNGVFVILSNIYAAAGMWKEVAKMRKVMLDRGVVKKPGQSW 856

Query: 660 IEVN 663
           IEV+
Sbjct: 857 IEVD 860



 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 150/560 (26%), Positives = 307/560 (54%), Gaps = 6/560 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +I+  N  I+ + K G+  SAK++FD+M  +D+ ++NLL+ G  +    ++A  L+++
Sbjct: 142 QPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQ 201

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           MV   +K    TF S+L+ C++A    +G +++  +L  G+  +L++G+ L++++++ G 
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGWDTDLFVGTALINMHIKCGD 261

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD LP R+L TW  M+       R  +   ++ +M+ EGV+P+ ++F  ++R 
Sbjct: 262 IGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLRA 321

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L++GK++H+ + ++GW D  I+V  A++  Y+ CGS+ +A + FD +   +V+S
Sbjct: 322 CNHPEALEQGKKVHARMKEVGW-DTEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVVS 380

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W ++++ +A +  I +A   F +M      P+  +F+  L   S    +  G+QI  ++ 
Sbjct: 381 WTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHII 440

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           + G+      V++AL  MY KC  ++ +  VFE    +++   N+++T+ +      +A+
Sbjct: 441 EAGYGSDD-RVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDNAL 499

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
             F  ++ EGI  +  T ++ L     S S  LG  + +H   +K+G ES++ VS +L+ 
Sbjct: 500 ATFQALLKEGIKPNSSTFTSILNVCKSSDSLELG--KWVHFLIMKAGLESDLHVSNALVS 557

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            +  CG +  +  +F  +P  ++V + +I+ G+ ++G  + A D  ++M + G+ PDK+T
Sbjct: 558 MFVNCGDLMSAKNLFNDMPKRDLVSWNTIIAGFVQHGKNQVAFDYFKMMQESGIKPDKIT 617

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F  +L  C     + EG+ + +++ +    D D    + +I M  + G ++ A ++  + 
Sbjct: 618 FTGLLNACASPEALTEGRRL-HALITEAAFDCDVLVGTGLISMYTKCGSIEDAHQVFHKL 676

Query: 581 PGGGDCMMWSSLLRSCRVHG 600
           P   +   W+S++     HG
Sbjct: 677 P-KKNVYSWTSMIAGYAQHG 695



 Score =  238 bits (606), Expect = 1e-59,   Method: Compositional matrix adjust.
 Identities = 138/525 (26%), Positives = 277/525 (52%), Gaps = 11/525 (2%)

Query: 82  ISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF 141
           +S  G+F    Q L   D   S  I+    T+S++L +C       +G +I+  +   G 
Sbjct: 85  LSKAGQFNEAMQVLERVD---SSHIQIYRQTYSALLQLCIKFKNLGDGERIYNHIKKSGV 141

Query: 142 GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201
             ++++ + L+++Y + G ++ A  +FD++ E+++ +WNL+L  + +    +E  +++ +
Sbjct: 142 QPDIFMRNTLINMYAKCGNTISAKQIFDDMREKDVYSWNLLLGGYVQHGLYEEAFKLHEQ 201

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M  + V+P+  +F  M+  C+    +D+G++L++ ++K GW D ++FV  AL++ +  CG
Sbjct: 202 MVQDSVKPDKRTFVSMLNACADARNVDKGRELYNLILKAGW-DTDLFVGTALINMHIKCG 260

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
            + +A K FD +P  D+++W S+++  A +     A  LF RM+    +P   +FV  L 
Sbjct: 261 DIGDATKVFDNLPTRDLVTWTSMITGLARHGRFKQACNLFQRMEEEGVQPDKVAFVSLLR 320

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
             +    +  GK++H  + ++G+D   ++V +A+  MY KC  +E ++ VF+   GR++ 
Sbjct: 321 ACNHPEALEQGKKVHARMKEVGWD-TEIYVGTAILSMYTKCGSMEDALEVFDLVKGRNVV 379

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
              +++      G I +A   F  M++ GI  + VT  + L A S  ++   G     H 
Sbjct: 380 SWTAMIAGFAQHGRIDEAFLFFNKMIESGIEPNRVTFMSILGACSSPSALKRGQQIQDHI 439

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             I++G+ S+  V  +L+  Y++CG ++ +H+VFEKI   NVV + +++  Y ++     
Sbjct: 440 --IEAGYGSDDRVRTALLSMYAKCGSLKDAHRVFEKISKQNVVAWNAMITAYVQHEQYDN 497

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV-FNSMKSVYGIDADRQHYSCM 560
           AL   + +++ G+ P+  TF  +L  C  S  ++ G+ V F  MK+  G+++D    + +
Sbjct: 498 ALATFQALLKEGIKPNSSTFTSILNVCKSSDSLELGKWVHFLIMKA--GLESDLHVSNAL 555

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           + M    G L  A+ L    P   D + W++++     HG   + 
Sbjct: 556 VSMFVNCGDLMSAKNLFNDMP-KRDLVSWNTIIAGFVQHGKNQVA 599


>gi|328774759|gb|AEB39779.1| pentatricopeptide repeat protein 98 [Funaria hygrometrica]
          Length = 980

 Score =  372 bits (956), Expect = e-100,   Method: Compositional matrix adjust.
 Identities = 187/621 (30%), Positives = 344/621 (55%), Gaps = 5/621 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++     I+  +K G ++ A K+F+ +P RD++T+  +I+G  + R  KQA  L+  M 
Sbjct: 239 DLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVME 298

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++     F S+L  C++     +G ++H R+  +G    +Y+G+ L+ +Y + G   
Sbjct: 299 EEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLDTEIYVGTALLSMYTKCGSME 358

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            AL++F+ +  RN+ +W  M+  F +  R +E    +NKM   G+EPN ++F  ++  CS
Sbjct: 359 DALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACS 418

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L +G+Q+H  +IK G++  +  V  AL+  Y+ CGSL++A+  F+ I   +V++WN
Sbjct: 419 RPSALKQGRQIHDRIIKAGYI-TDDRVRTALLSMYAKCGSLMDARNVFERISKQNVVAWN 477

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y  ++   +A+  F  +     +P   +F   LN       +  GK +   + + 
Sbjct: 478 AMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSILNVCKSPDALELGKWVQSLIIRA 537

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF+   +H+++AL  M+  C  + S++ +F   P R L   N+++   +  G  + A + 
Sbjct: 538 GFE-SDLHIRNALVSMFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDY 596

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M + G+  D++T +  L A +   +   G  R LH    ++  + ++ V   L+  Y
Sbjct: 597 FKMMQESGVKPDQITFTGLLNACASPEALTEG--RRLHALITEAALDCDVVVGTGLISMY 654

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG I+ +H VF  +P  NV  +TS++ GY+++G G+EAL++   M Q G+ PD +TF+
Sbjct: 655 TKCGSIDDAHLVFHNLPKKNVYSWTSMITGYAQHGRGKEALELFCQMQQEGVKPDWITFV 714

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
             L+ C H+G++KEG   F SMK  + I+   +HY CM+D+ GRAG+L +A E + +   
Sbjct: 715 GALSACAHAGLIKEGLHHFESMKD-FNIEPRMEHYGCMVDLFGRAGLLHEAVEFINKMQV 773

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +C+VH +  +  +VA   +EL+P D  VY  +SN Y+  G ++   ++
Sbjct: 774 KPDSRLWGALLGACQVHLDVELAEKVAQKKLELDPNDDGVYVILSNIYAAAGMWKEVTKM 833

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R+  L R + +  G S IEV+
Sbjct: 834 RKVMLDRGVVKKPGQSWIEVD 854



 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 151/560 (26%), Positives = 306/560 (54%), Gaps = 6/560 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +I+  N  I  + K G+ NSAK++FDEMP +D+ ++NLL+ G  + R  ++A  L+++
Sbjct: 136 QPDIFMWNMLISMYAKCGNTNSAKQIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQ 195

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           MV  G+K    TF  +L+ C++A    +G ++   +L+ G+  +L++G+ L++++++ G 
Sbjct: 196 MVQDGVKPDKYTFVYMLNACADAKNVDKGGELFSLILNAGWDTDLFVGTALINMHIKCGG 255

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL +F+ LP R+L TW  M+       +  +   ++  M+ EGV+P+ ++F  +++ 
Sbjct: 256 VDDALKVFNNLPRRDLITWTSMITGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKA 315

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L++GK++H+ + ++G +D  I+V  AL+  Y+ CGS+ +A + F+ +   +V+S
Sbjct: 316 CNHPEALEQGKRVHARMKEVG-LDTEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVS 374

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W ++++ +A +  + +A   F +M      P+  +F+  L   SR   +  G+QIH  + 
Sbjct: 375 WTAMIAGFAQHGRMEEAFLFFNKMIESGIEPNRVTFMSILGACSRPSALKQGRQIHDRII 434

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K G+      V++AL  MY KC  +  +  VFE    +++   N+++T+ +      +AV
Sbjct: 435 KAGYITDD-RVRTALLSMYAKCGSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAV 493

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
             F  ++ EGI  D  T ++ L       +  LG  + +    I++GFES++ +  +L+ 
Sbjct: 494 ATFQALLKEGIKPDSSTFTSILNVCKSPDALELG--KWVQSLIIRAGFESDLHIRNALVS 551

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            +  CG +  +  +F  +P  ++V + +I+ G+ ++G  + A D  ++M + G+ PD++T
Sbjct: 552 MFVNCGDLMSAMNLFNDMPERDLVSWNTIIAGFVQHGENQFAFDYFKMMQESGVKPDQIT 611

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F  +L  C     + EG+ + +++ +   +D D    + +I M  + G +D A  +    
Sbjct: 612 FTGLLNACASPEALTEGRRL-HALITEAALDCDVVVGTGLISMYTKCGSIDDAHLVFHNL 670

Query: 581 PGGGDCMMWSSLLRSCRVHG 600
           P   +   W+S++     HG
Sbjct: 671 P-KKNVYSWTSMITGYAQHG 689



 Score =  227 bits (579), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 132/495 (26%), Positives = 257/495 (51%), Gaps = 6/495 (1%)

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           I+    T+SS+L +C       +G +IH  +       ++++ + L+ +Y + G +  A 
Sbjct: 100 IQIHRQTYSSLLQLCIKHKNLGDGERIHNHIKFSKIQPDIFMWNMLISMYAKCGNTNSAK 159

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FDE+P++++ +WNL+L  + +  R +E  R++ +M  +GV+P+  +F YM+  C+   
Sbjct: 160 QIFDEMPDKDVYSWNLLLGGYVQHRRYEEAFRLHEQMVQDGVKPDKYTFVYMLNACADAK 219

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +D+G +L S ++  GW D ++FV  AL++ +  CG + +A K F+ +P  D+I+W S++
Sbjct: 220 NVDKGGELFSLILNAGW-DTDLFVGTALINMHIKCGGVDDALKVFNNLPRRDLITWTSMI 278

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           +  A +     A  LF  M+    +P   +FV  L   +    +  GK++H  + ++G D
Sbjct: 279 TGLARHRQFKQACNLFQVMEEEGVQPDKVAFVSLLKACNHPEALEQGKRVHARMKEVGLD 338

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
              ++V +AL  MY KC  +E ++ VF    GR++    +++      G +++A   F  
Sbjct: 339 -TEIYVGTALLSMYTKCGSMEDALEVFNLVKGRNVVSWTAMIAGFAQHGRMEEAFLFFNK 397

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M++ GI  + VT  + L A S  ++   G  R +H   IK+G+ ++  V  +L+  Y++C
Sbjct: 398 MIESGIEPNRVTFMSILGACSRPSALKQG--RQIHDRIIKAGYITDDRVRTALLSMYAKC 455

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G +  +  VFE+I   NVV + +++  Y ++     A+   + +++ G+ PD  TF  +L
Sbjct: 456 GSLMDARNVFERISKQNVVAWNAMITAYVQHEKYDNAVATFQALLKEGIKPDSSTFTSIL 515

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             C     ++ G+ V  S+    G ++D    + ++ M    G L  A  L    P   D
Sbjct: 516 NVCKSPDALELGKWV-QSLIIRAGFESDLHIRNALVSMFVNCGDLMSAMNLFNDMP-ERD 573

Query: 586 CMMWSSLLRSCRVHG 600
            + W++++     HG
Sbjct: 574 LVSWNTIIAGFVQHG 588


>gi|359488555|ref|XP_003633777.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like, partial [Vitis vinifera]
          Length = 825

 Score =  367 bits (943), Expect = 8e-99,   Method: Compositional matrix adjust.
 Identities = 211/627 (33%), Positives = 354/627 (56%), Gaps = 11/627 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S+N  I  +VKSG+L  A+KLFD M  R  VT+ +LI G  +    K+A  L+ 
Sbjct: 79  PHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFV 138

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   G +    TF ++LS C+      +  Q+  +++ LG+   L +G+ LVD Y +  
Sbjct: 139 QMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSYCKSN 198

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF E+PE +  ++N M+  + +    ++ + ++ +M+  G++P   +F   V 
Sbjct: 199 RLDLACQLFKEMPEIDSVSYNAMITGYSKDGLDEKAVNLFVEMQNSGLKPTEFTFA-AVL 257

Query: 220 GCSIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             +IG  LD+   G+Q+HS VIK  +V  N+FV+NAL+DFYS   S+I+A+K FD +P  
Sbjct: 258 CANIG--LDDIVLGQQIHSFVIKTNFV-WNVFVSNALLDFYSKHDSVIDARKLFDEMPEQ 314

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D +S+N I+S YA       A +LF  +Q          F   L+ AS T +   G+QIH
Sbjct: 315 DGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQIH 374

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
                   D   + V ++L DMY KC   E +  +F +   RS     +++++ +  G  
Sbjct: 375 AQTIVTTAD-SEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGFY 433

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++ +++F  M    +  D+ T ++ L+A +  AS +LG  + LH   IKSGF SN+    
Sbjct: 434 EEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG--KQLHSFIIKSGFMSNVFSGS 491

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG I+ + Q F+++P  N+V + ++++ Y++NG     L   + M+  GL P
Sbjct: 492 ALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQP 551

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D V+FL VL+ C+HSG+V+EG   FNSM  +Y +D  R+HY+ ++DML R+G  ++AE+L
Sbjct: 552 DSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKL 611

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGE 635
           + + P   D +MWSS+L +CR+H N+ + RR A+ L  +E + D A Y  +SN Y+  G+
Sbjct: 612 MAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAGQ 671

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           +E   ++ +    R + +   +S +E+
Sbjct: 672 WENVSKVHKAMRDRGVKKLPAYSWVEI 698



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 53/240 (22%), Positives = 105/240 (43%), Gaps = 42/240 (17%)

Query: 418 LSTTLKALSV-SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           +ST LK+ S+ S    L     +    +K+GF+ + + S   +  + + G +  + Q+FE
Sbjct: 17  VSTFLKSSSLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGELSQARQLFE 76

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR------------------------ 512
           K+P  N V    +++GY ++G   EA  + + M++R                        
Sbjct: 77  KMPHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFEL 136

Query: 513 -------GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
                  G  PD VTF+ +L+GCN   M  +   V   +  + G D+     + ++D   
Sbjct: 137 FVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKL-GYDSRLIVGNTLVDSYC 195

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME-----LEPVDF 620
           ++  LD A +L ++ P   D + +++++      G   +  +  N+ +E     L+P +F
Sbjct: 196 KSNRLDLACQLFKEMP-EIDSVSYNAMITGYSKDG---LDEKAVNLFVEMQNSGLKPTEF 251


>gi|168023826|ref|XP_001764438.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|54695178|dbj|BAD67154.1| PpPPR_91 [Physcomitrella patens]
 gi|162684302|gb|EDQ70705.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 868

 Score =  365 bits (938), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 198/659 (30%), Positives = 361/659 (54%), Gaps = 40/659 (6%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +++IY  N  I+ + K   + SA+++F  M  RD+VT++ +I+      HP +A   ++ 
Sbjct: 88  EIDIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFER 147

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    I+ +  TF S+L  C+N     +G +IH  V ++G   ++ + + L+ +Y + G 
Sbjct: 148 MTDANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGMETDVAVATALITMYSKCGE 207

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A ++F ++ ERN+ +W  +++A  +  + +E   +Y +M   G+ PN ++F  ++  
Sbjct: 208 ISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNS 267

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L+ G+++HSH+ + G ++ ++ VANAL+  Y  C S+ EA++ FD +   DVIS
Sbjct: 268 CNTPEALNRGRRIHSHISERG-LETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS 326

Query: 281 WNSIVSIYA-----DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           W+++++ YA     D + I +  +L  RM+     P+  +F+  L   +  G +  G+QI
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQI 386

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVI------------------------------ 365
           H  ++K+GF+     +Q+A+ +MY KC  I                              
Sbjct: 387 HAELSKVGFELDR-SLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGD 445

Query: 366 -ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
             S+  VF   P R++   N ++     +G+I    E+   M  EG   D VT+ T L+A
Sbjct: 446 LSSAEKVFSEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEA 505

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
               A A L   +L+H  A+K G ES+  V+ SL+  YS+CG +  +  VF+K+ + + V
Sbjct: 506 --CGALAGLERGKLVHAEAVKLGLESDTVVATSLIGMYSKCGQVAEARTVFDKMSNRDTV 563

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + +++ GY ++G G EA+D+ + M++  + P+++T   V++ C+ +G+V+EG+ +F  M
Sbjct: 564 AWNAMLAGYGQHGDGLEAVDLFKRMLKERVSPNEITLTAVISACSRAGLVQEGREIFRMM 623

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           +  + +   +QHY CM+D+LGRAG L +AEE +Q  P   D  +W +LL +C+ H N  +
Sbjct: 624 QEDFKMTPRKQHYGCMVDLLGRAGRLQEAEEFIQSMPCEPDISVWHALLGACKSHNNVQL 683

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             R A+ ++ELEP   +VY  +SN Y++ G ++ S ++R     R L +D G S IE++
Sbjct: 684 AERAAHHILELEPSYASVYITLSNIYAQAGRWDDSTKVRRVMDDRGLKKDRGESSIEID 742



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 129/546 (23%), Positives = 272/546 (49%), Gaps = 42/546 (7%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++A+ L   +   G+  +++T+  V+  C+ A  + +G  +H ++  LG  +++Y+G+ L
Sbjct: 38  REAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELGVEIDIYLGNSL 97

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           ++ Y +      A  +F  +  R++ TW+ M+ A+   + P +    + +M    +EPN 
Sbjct: 98  INFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMTDANIEPNR 157

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++F  +++ C+   +L++G+++H+ V  +G ++ ++ VA AL+  YS CG +  A + F 
Sbjct: 158 ITFLSILKACNNYSILEKGRKIHTIVKAMG-METDVAVATALITMYSKCGEISVACEVFH 216

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +   +V+SW +I+   A +  + +A EL+ +M      P+  +FV  LN  +    +  
Sbjct: 217 KMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSCNTPEALNR 276

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G++IH ++++ G +   + V +AL  MY KCN ++ +  +F+    R +   ++++    
Sbjct: 277 GRRIHSHISERGLETDMI-VANALITMYCKCNSVQEAREIFDRMSKRDVISWSAMIAGYA 335

Query: 392 HSG-----NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
            SG     +I +  ++   M  EG+  ++VT  + L+A +   +   G  R +H    K 
Sbjct: 336 QSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQG--RQIHAELSKV 393

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN--------------- 491
           GFE + ++  ++ + Y++CG I  + QVF K+ + NVV +TS ++               
Sbjct: 394 GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKMANKNVVAWTSFLSMYIKCGDLSSAEKVF 453

Query: 492 ----------------GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
                           GY++NG   +  ++L  M   G  PD+VT + +L  C     ++
Sbjct: 454 SEMPTRNVVSWNLMIAGYAQNGDIVKVFELLSSMKAEGFQPDRVTVITILEACGALAGLE 513

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
            G+LV      + G+++D    + +I M  + G + +A  +  +     D + W+++L  
Sbjct: 514 RGKLVHAEAVKL-GLESDTVVATSLIGMYSKCGQVAEARTVFDKMS-NRDTVAWNAMLAG 571

Query: 596 CRVHGN 601
              HG+
Sbjct: 572 YGQHGD 577



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 219/413 (53%), Gaps = 11/413 (2%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            C+  R  E +++   +K  G+  N  ++  ++  C+     ++GK +H  + +LG V++
Sbjct: 31  LCKAGRLREAIQLLGIIKQRGLLVNSNTYGCVIEHCAKARRFEDGKMVHKQLDELG-VEI 89

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +I++ N+L++FYS    +  A++ F  + + DV++W+S+++ YA  +    A + F RM 
Sbjct: 90  DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMT 149

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                P+  +F+  L   +    +  G++IH  V  +G +   V V +AL  MY KC  I
Sbjct: 150 DANIEPNRITFLSILKACNNYSILEKGRKIHTIVKAMGME-TDVAVATALITMYSKCGEI 208

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  VF     R++    +++ +      + +A E++  M+  GI  + VT  + L + 
Sbjct: 209 SVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQAGISPNAVTFVSLLNSC 268

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +   + N G  R +H    + G E+++ V+ +L+  Y +C  ++ + ++F+++   +V+ 
Sbjct: 269 NTPEALNRG--RRIHSHISERGLETDMIVANALITMYCKCNSVQEAREIFDRMSKRDVIS 326

Query: 486 FTSIMNGYSRNG-MGREALD----MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           +++++ GY+++G   +E++D    +LE M + G+ P+KVTF+ +L  C   G +++G+ +
Sbjct: 327 WSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSILRACTAHGALEQGRQI 386

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
              +  V G + DR   + + +M  + G + +AE++  +     + + W+S L
Sbjct: 387 HAELSKV-GFELDRSLQTAIFNMYAKCGSIYEAEQVFSKM-ANKNVVAWTSFL 437



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 86/350 (24%), Positives = 169/350 (48%), Gaps = 42/350 (12%)

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           GK +H  + +LG +   +++ ++L + Y K   + S+  VF     R +   +S++ +  
Sbjct: 75  GKMVHKQLDELGVEI-DIYLGNSLINFYSKFEDVASAEQVFRRMTLRDVVTWSSMIAAYA 133

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            + +   A + F  M D  I  + +T  + LKA +  +    G  R +H      G E++
Sbjct: 134 GNNHPAKAFDTFERMTDANIEPNRITFLSILKACNNYSILEKG--RKIHTIVKAMGMETD 191

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           +AV+ +L+  YS+CG I ++ +VF K+   NVV +T+I+   +++    EA ++ E M+Q
Sbjct: 192 VAVATALITMYSKCGEISVACEVFHKMTERNVVSWTAIIQANAQHRKLNEAFELYEQMLQ 251

Query: 512 RGLIPDKVTFLCVLAGCN-----------HSGMVKEG----QLVFNSMKSVY----GIDA 552
            G+ P+ VTF+ +L  CN           HS + + G     +V N++ ++Y     +  
Sbjct: 252 AGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDMIVANALITMYCKCNSVQE 311

Query: 553 DRQ-----------HYSCMIDMLGRAGILDKAE-----ELLQQTPGGG---DCMMWSSLL 593
            R+            +S MI    ++G  DK       +LL++    G   + + + S+L
Sbjct: 312 AREIFDRMSKRDVISWSAMIAGYAQSGYKDKESIDEVFQLLERMRREGVFPNKVTFMSIL 371

Query: 594 RSCRVHGNEIIGRRVANILMELE-PVDFAVYSQVSNFYSEIGEFEVSMQI 642
           R+C  HG    GR++   L ++   +D ++ + + N Y++ G    + Q+
Sbjct: 372 RACTAHGALEQGRQIHAELSKVGFELDRSLQTAIFNMYAKCGSIYEAEQV 421


>gi|328774755|gb|AEB39777.1| pentatricopeptide repeat protein 91 [Funaria hygrometrica]
          Length = 890

 Score =  360 bits (924), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 192/658 (29%), Positives = 360/658 (54%), Gaps = 40/658 (6%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++IY  N  I+ + K G + S +++F  M  RD+VT++ +I+      HP +A   ++ M
Sbjct: 111 IDIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERM 170

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               I+ +  TF S+L  C+N     +  +IH  V + G   ++ + + L+ +Y + G  
Sbjct: 171 KDANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGMETDVAVATALITMYSKCGEI 230

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A ++F ++ ERN+ +W  +++A  +  + +E   +Y KM   G+ PN ++F  ++  C
Sbjct: 231 SLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L+ G+++HSH+ + G ++ ++ VANAL+  Y  C  + +A+++FD +   DVISW
Sbjct: 291 NTPEALNRGRRIHSHISERG-LETDVVVANALITMYCKCNCIQDARETFDRMSKRDVISW 349

Query: 282 NSIVSIYA-----DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +++++ YA     D + + +  +L  RM+     P+  +F+  L   S  G +  G+QIH
Sbjct: 350 SAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQIH 409

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL----- 391
             ++K+GF+     +Q+A+ +MY KC  I  +  VF     +++    SL+T  +     
Sbjct: 410 AEISKVGFE-SDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDL 468

Query: 392 --------------------------HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
                                      SG+I    E+   M  EG   D VT+ + L+A 
Sbjct: 469 TSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEAC 528

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
              ++   G  +L+H  A+K G ES+  V+ SL+  YS+CG +  +  VF+KI + + V 
Sbjct: 529 GALSALERG--KLVHAEAVKLGLESDTVVATSLIGMYSKCGEVTEARTVFDKISNRDTVA 586

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + +++ GY ++G+G EA+D+ + M++  + P+++TF  V++ C  +G+V+EG+ +F  M+
Sbjct: 587 WNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISACGRAGLVQEGREIFRIMQ 646

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             + +   +QHY CM+D+LGRAG L +AEE +Q+ P   D  +W +LL +C+ H N  + 
Sbjct: 647 EDFRMKPGKQHYGCMVDLLGRAGRLQEAEEFIQRMPCEPDISVWHALLGACKSHDNVQLA 706

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
              A+ ++ LEP + +VY  +SN Y++ G ++ S ++R+    + L +D G S IE++
Sbjct: 707 EWAAHHILRLEPSNASVYVTLSNIYAQAGRWDDSTKVRKVMDDKGLKKDRGESSIEID 764



 Score =  212 bits (539), Expect = 6e-52,   Method: Compositional matrix adjust.
 Identities = 131/545 (24%), Positives = 270/545 (49%), Gaps = 42/545 (7%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           K+A+ L   +   G+  +++T+  ++  C+    + +G  +H ++  LG  +++Y+G+ L
Sbjct: 60  KEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELGLAIDIYLGNSL 119

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           ++ Y + G       +F  +  R++ TW+ M+ A+   + P +    + +MK   +EPN 
Sbjct: 120 INFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMKDANIEPNR 179

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++F  +++ C+   +L++ +++H+ V+K   ++ ++ VA AL+  YS CG +  A + F 
Sbjct: 180 ITFLSILKACNNYSMLEKAREIHT-VVKASGMETDVAVATALITMYSKCGEISLACEIFQ 238

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +   +V+SW +I+   A +  + +A EL+ +M      P+  +FV  LN  +    +  
Sbjct: 239 KMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSCNTPEALNR 298

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G++IH ++++ G +   V V +AL  MY KCN I+ +   F+    R +   ++++    
Sbjct: 299 GRRIHSHISERGLETDVV-VANALITMYCKCNCIQDARETFDRMSKRDVISWSAMIAGYA 357

Query: 392 HSG-----NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
            SG     ++ +  ++   M  EG+  ++VT  + LKA SV  +   G  R +H    K 
Sbjct: 358 QSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQG--RQIHAEISKV 415

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN--------------- 491
           GFES+ ++  ++ + Y++CG I  + QVF K+ + NVV + S++                
Sbjct: 416 GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENKNVVAWASLLTMYIKCGDLTSAEKVF 475

Query: 492 ----------------GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
                           GY+++G   +  ++L  M   G  PD+VT + +L  C     ++
Sbjct: 476 SEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMKVEGFQPDRVTIISILEACGALSALE 535

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
            G+LV      + G+++D    + +I M  + G + +A  +  +     D + W+++L  
Sbjct: 536 RGKLVHAEAVKL-GLESDTVVATSLIGMYSKCGEVTEARTVFDKI-SNRDTVAWNAMLAG 593

Query: 596 CRVHG 600
              HG
Sbjct: 594 YGQHG 598



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 100/413 (24%), Positives = 220/413 (53%), Gaps = 11/413 (2%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            C+  R  E +++   +K  G+  N  ++  ++  C+     ++GK +H  + +LG + +
Sbjct: 53  LCKAGRLKEAIQLLGIIKQRGLLVNSNTYGCIIEHCAKLRRFEDGKMVHKQLDELG-LAI 111

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +I++ N+L++FYS  G +   ++ F  + + DV++W+S+++ YA  +    A + F RM+
Sbjct: 112 DIYLGNSLINFYSKFGDVASVEQVFRRMTLRDVVTWSSMIAAYAGNNHPAKAFDTFERMK 171

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                P+  +F+  L   +    +   ++IH  V   G +   V V +AL  MY KC  I
Sbjct: 172 DANIEPNRITFLSILKACNNYSMLEKAREIHTVVKASGME-TDVAVATALITMYSKCGEI 230

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  +F+    R++    +++ +      + +A E++  M+  GI  + VT  + L + 
Sbjct: 231 SLACEIFQKMKERNVVSWTAIIQANAQHRKLNEAFELYEKMLQAGISPNAVTFVSLLNSC 290

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +   + N G  R +H    + G E+++ V+ +L+  Y +C  I+ + + F+++   +V+ 
Sbjct: 291 NTPEALNRG--RRIHSHISERGLETDVVVANALITMYCKCNCIQDARETFDRMSKRDVIS 348

Query: 486 FTSIMNGYSRNG-MGREALD----MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           +++++ GY+++G   +E+LD    +LE M + G+ P+KVTF+ +L  C+  G +++G+ +
Sbjct: 349 WSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFMSILKACSVHGALEQGRQI 408

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
              +  V G ++DR   + + +M  + G + +AE++  +     + + W+SLL
Sbjct: 409 HAEISKV-GFESDRSLQTAIFNMYAKCGSIYEAEQVFSKME-NKNVVAWASLL 459



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 97/418 (23%), Positives = 188/418 (44%), Gaps = 48/418 (11%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T  +L  +C +   L+    + S+  +   + ++  +N  I  + K   
Sbjct: 271 MLQAGISPNAVTFVSLLNSCNTPEALNRGRRIHSHISERGLETDVVVANALITMYCKCNC 330

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHP-----KQALYLYDEMVSHGIKESASTFS 114
           +  A++ FD M  RD+++++ +I+G  +  +       +   L + M   G+  +  TF 
Sbjct: 331 IQDARETFDRMSKRDVISWSAMIAGYAQSGYQDKESLDEVFQLLERMRREGVFPNKVTFM 390

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGF-------------------------------GL 143
           S+L  CS  G   +G QIH  +  +GF                                 
Sbjct: 391 SILKACSVHGALEQGRQIHAEISKVGFESDRSLQTAIFNMYAKCGSIYEAEQVFSKMENK 450

Query: 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           N+   + L+ +Y++ G    A  +F E+  RN+ +WNLM+  + +     +V  + + MK
Sbjct: 451 NVVAWASLLTMYIKCGDLTSAEKVFSEMSTRNVVSWNLMIAGYAQSGDIAKVFELLSSMK 510

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
            EG +P+ ++   ++  C     L+ GK +H+  +KLG ++ +  VA +L+  YS CG +
Sbjct: 511 VEGFQPDRVTIISILEACGALSALERGKLVHAEAVKLG-LESDTVVATSLIGMYSKCGEV 569

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
            EA+  FD I   D ++WN++++ Y  + +  +A++LF RM   R  P+  +F   ++  
Sbjct: 570 TEARTVFDKISNRDTVAWNAMLAGYGQHGIGPEAVDLFKRMLKERVPPNEITFTAVISAC 629

Query: 324 SRTGNVYFGKQI-----HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            R G V  G++I       +  K G  H        + D+ G+   ++ +    +  P
Sbjct: 630 GRAGLVQEGREIFRIMQEDFRMKPGKQH-----YGCMVDLLGRAGRLQEAEEFIQRMP 682


>gi|4056430|gb|AAC98003.1| This gene may be continued from BAC T23E23 [Arabidopsis thaliana]
          Length = 278

 Score =  354 bits (909), Expect = 8e-95,   Method: Compositional matrix adjust.
 Identities = 164/278 (58%), Positives = 220/278 (79%)

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           MTSL+H G  KD +EMFG M+DEG G+DEVTLST LKALS+S   +L SC L+HCCAIKS
Sbjct: 1   MTSLMHCGITKDIIEMFGLMIDEGTGIDEVTLSTVLKALSLSLPESLHSCTLVHCCAIKS 60

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G+ +++AVSCSL+DAY++ G  E+S +VF+++ +PN+ C TSI+NGY+RNGMG + + ML
Sbjct: 61  GYAADVAVSCSLIDAYTKSGQNEVSRKVFDELDTPNIFCLTSIINGYARNGMGTDCVKML 120

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M +  LIPD+VT L VL+GC+HSG+V+EG+L+F+S++S YGI   R+ Y+CM+D+LGR
Sbjct: 121 REMDRMNLIPDEVTILSVLSGCSHSGLVEEGELIFDSLESKYGISPGRKLYACMVDLLGR 180

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           AG+++KAE LL Q  G  DC+ WSSLL+SCR+H NE IGRR A +LM LEP +FAVY QV
Sbjct: 181 AGLVEKAERLLLQARGDADCVAWSSLLQSCRIHRNETIGRRAAEVLMNLEPENFAVYIQV 240

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           S FY EIG+FE+S QIRE A +R+L R+IG+S + V +
Sbjct: 241 SKFYFEIGDFEISRQIREIAASRELMREIGYSSVVVKN 278



 Score = 45.1 bits (105), Expect = 0.12,   Method: Compositional matrix adjust.
 Identities = 38/199 (19%), Positives = 87/199 (43%), Gaps = 7/199 (3%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ----IHCRVLSLGFGLNLYI 147
           K  + ++  M+  G      T S+VL   S +    E +     +HC  +  G+  ++ +
Sbjct: 11  KDIIEMFGLMIDEGTGIDEVTLSTVLKALSLS--LPESLHSCTLVHCCAIKSGYAADVAV 68

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
              L+D Y + G +  +  +FDEL   N+     ++  +       + ++M  +M    +
Sbjct: 69  SCSLIDAYTKSGQNEVSRKVFDELDTPNIFCLTSIINGYARNGMGTDCVKMLREMDRMNL 128

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P+ ++   ++ GCS   L++EG+ +   +     +     +   +VD     G + +A+
Sbjct: 129 IPDEVTILSVLSGCSHSGLVEEGELIFDSLESKYGISPGRKLYACMVDLLGRAGLVEKAE 188

Query: 268 KSFDFIPVD-DVISWNSIV 285
           +       D D ++W+S++
Sbjct: 189 RLLLQARGDADCVAWSSLL 207



 Score = 42.7 bits (99), Expect = 0.70,   Method: Compositional matrix adjust.
 Identities = 39/187 (20%), Positives = 86/187 (45%), Gaps = 5/187 (2%)

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM--LLDEGKQLHSHVIKLGWVDVNIFVAN 251
           +++ M+  M  EG   + ++   +++  S+ +   L     +H   IK G+   ++ V+ 
Sbjct: 12  DIIEMFGLMIDEGTGIDEVTLSTVLKALSLSLPESLHSCTLVHCCAIKSGYA-ADVAVSC 70

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           +L+D Y+  G    ++K FD +   ++    SI++ YA   +  D +++   M      P
Sbjct: 71  SLIDAYTKSGQNEVSRKVFDELDTPNIFCLTSIINGYARNGMGTDCVKMLREMDRMNLIP 130

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
              + +  L+  S +G V  G+ I   + +K G   G   + + + D+ G+  ++E +  
Sbjct: 131 DEVTILSVLSGCSHSGLVEEGELIFDSLESKYGISPGR-KLYACMVDLLGRAGLVEKAER 189

Query: 371 VFESAPG 377
           +   A G
Sbjct: 190 LLLQARG 196



 Score = 42.4 bits (98), Expect = 0.83,   Method: Compositional matrix adjust.
 Identities = 40/151 (26%), Positives = 70/151 (46%), Gaps = 7/151 (4%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID + KSG    ++K+FDE+   ++     +I+G  +       + +  EM    +    
Sbjct: 73  IDAYTKSGQNEVSRKVFDELDTPNIFCLTSIINGYARNGMGTDCVKMLREMDRMNLIPDE 132

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLS---LGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            T  SVLS CS++G   EG  I   + S   +  G  LY  + +VDL  R G   +A  L
Sbjct: 133 VTILSVLSGCSHSGLVEEGELIFDSLESKYGISPGRKLY--ACMVDLLGRAGLVEKAERL 190

Query: 168 FDELP-ERNLATWNLMLRAFCELSRPDEVLR 197
             +   + +   W+ +L++ C + R + + R
Sbjct: 191 LLQARGDADCVAWSSLLQS-CRIHRNETIGR 220


>gi|113205417|gb|AAU90328.2| Pentatricopeptide repeat domain containing protein, putative
           [Solanum demissum]
          Length = 819

 Score =  353 bits (907), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 204/626 (32%), Positives = 352/626 (56%), Gaps = 7/626 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S N  +  +VKS +L  A++LF+ M +R+ V++ ++I G  +   PK+A  LY 
Sbjct: 73  PYRNTSSVNMMVSGYVKSRNLFRARELFESMFSRNEVSWTIMIGGYSQNNQPKEAFNLYT 132

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G+K    TF+++LS   +     E +QIH  ++  GF  +L + + LVD Y +  
Sbjct: 133 EMCRSGVKPDHITFATLLSGFDDTTTLKEVLQIHSHIIRFGFSASLIVFNSLVDSYCKTC 192

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF E+P ++  ++N+M+  + +    +E L+++ +M+    +P+G +F  M+ 
Sbjct: 193 CLDIASQLFSEMPTKDSVSFNVMITGYTKYGFREEALKLFMQMRNMDFQPSGFTFAAML- 251

Query: 220 GCSIGML-LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           G S+G   +  G+Q+H   IK  +V  +IFVANAL+DFYS    +  AK  FD +P  D 
Sbjct: 252 GMSVGSEDVIFGQQIHGLAIKTSYV-WDIFVANALLDFYSKHDYIDLAKNLFDEMPELDG 310

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +S+N I++ YA       + +LF R+Q          F   L+ A+   N+  G+Q H  
Sbjct: 311 VSYNIIITGYAWNGQYEKSFDLFKRLQGTSFDRKNFPFATMLSVAAIELNLSMGRQTHAQ 370

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
              +      V V +AL DMY KC   E +  +F +   R+     ++++  +  G  ++
Sbjct: 371 AV-VTTAVSEVQVGNALVDMYAKCEKFEDANRIFANLAYRNSVPWTAIISIYVQKGFHEE 429

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A++MF  M  E +  D+ T ++TLKA +  AS +LG  + LH   I+ G  S++     L
Sbjct: 430 ALKMFKEMNRENVHGDQATFASTLKASANLASVSLG--KQLHSSVIRLGLLSSVFSGSVL 487

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y+ CG ++ + +VF+++P  N+VC+ ++++ YS+NG           MI+ GL PD 
Sbjct: 488 VDMYANCGSMKDAIEVFKEMPDRNIVCWNALISAYSQNGDAEATFSSFADMIESGLYPDS 547

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           V+FL VL  C+H G+V++    FNSM  VY +D  R+HY+ MID+L R+G  ++AE L+ 
Sbjct: 548 VSFLSVLTACSHRGLVEKALWYFNSMTQVYKLDPRRKHYATMIDVLCRSGRFNEAENLIS 607

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGEFE 637
           + P   D +MWSS+L SCR+H N+ + ++ A+ L +++ + D A Y  +SN Y+E G++E
Sbjct: 608 EMPFEPDEVMWSSVLNSCRIHKNQDLAKKAADQLFKMDALRDAAAYVNMSNIYAEAGKWE 667

Query: 638 VSMQIRETALARKLTRDIGHSLIEVN 663
            + ++++    R + +   +S +E++
Sbjct: 668 NAAKVKKAMRERGVKKVTAYSWVEID 693


>gi|108862806|gb|ABA99524.2| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1176

 Score =  352 bits (902), Expect = 5e-94,   Method: Compositional matrix adjust.
 Identities = 206/673 (30%), Positives = 355/673 (52%), Gaps = 21/673 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDS------YCQPNPQLNIYSSNRTIDDF 54
           M    ++P    ++++  +CT     +   L+ +      +C       I+  N  I  +
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCS-----EIFVGNAVITLY 188

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           ++ G    A+++F +MP RD VT+N LISG  +  H + AL +++EM   G+     T S
Sbjct: 189 LRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S+L+ C++ G   +G Q+H  +   G   +  +   L+DLY++ G    AL +F+     
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N+  WNLML AF +++   +   ++ +M+A G+ PN  ++  ++R C+    +D G+Q+H
Sbjct: 309 NVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH 368

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           S  +K G+ + +++V+  L+D YS  G L +A++  + +   DV+SW S+++ Y  ++  
Sbjct: 369 SLSVKTGF-ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            DAL  F  MQ C   P        ++  +    +  G QIH  +   G+  G V + +A
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS-GDVSIWNA 486

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L ++Y +C  I  + + FE    +     N L++    SG  ++A+++F  M   G+  +
Sbjct: 487 LVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHN 546

Query: 415 EVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             T  + L     SASANL   +    +H   IK+G      V  +L+  Y +CG  E +
Sbjct: 547 VFTFVSAL-----SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
              F ++   N V + +I+   S++G G EALD+ + M + G+ P+ VTF+ VLA C+H 
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V+EG   F SM   YGI     HY+C+ID+ GRAG LD+A++ +++ P   D M+W +
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +C+VH N  +G   A  L+ELEP D A Y  +SN Y+   ++    Q+R+    R +
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781

Query: 652 TRDIGHSLIEVNS 664
            ++ G S IEV +
Sbjct: 782 RKEPGRSWIEVKN 794



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/556 (25%), Positives = 280/556 (50%), Gaps = 12/556 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K+G +  A+++F+E+ ARD V++  ++SG  +    ++AL LY +M   G+ 
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV 140

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +    SSVLS C+ A  + +G  IH +    GF   +++G+ ++ LY+R G    A  +
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERV 200

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++P R+  T+N ++    +    +  L ++ +M+  G+ P+ ++   ++  C+    L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +G QLHS++ K G +  +  +  +L+D Y  CG +  A   F+     +V+ WN ++  
Sbjct: 261 QKGTQLHSYLFKAG-ISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +   + +  + ELF +MQ    RP+  ++   L   + T  +  G+QIH    K GF+  
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-S 378

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++V   L DMY K   +E +  V E    + +    S++   +     KDA+  F  M 
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSR 464
             GI  D + L++     ++S  A + + R    +H     SG+  ++++  +L++ Y+R
Sbjct: 439 KCGIWPDNIGLAS-----AISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYAR 493

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I  +   FE+I   + + +  +++G++++G+  EAL +   M Q G+  +  TF+  
Sbjct: 494 CGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+   +   +K+G+ +   +    G   + +  + +I + G+ G  + A+    +     
Sbjct: 554 LSASANLAEIKQGKQIHARVIKT-GHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERN 612

Query: 585 DCMMWSSLLRSCRVHG 600
           + + W++++ SC  HG
Sbjct: 613 E-VSWNTIITSCSQHG 627



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 258/526 (49%), Gaps = 9/526 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLY-DEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           M  R   +    ++G      P + L L+ D+   HG       F+  L  C   G   +
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHG-GLGPLDFACALRACRGNGRRWQ 59

Query: 129 GI-QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            + +IH + ++ G G    +G+ L+DLY + G  + A  +F+EL  R+  +W  ML  + 
Sbjct: 60  VVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +    +E L +Y +M   GV P       ++  C+   L  +G+ +H+   K G+    I
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCS-EI 178

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV NA++  Y  CGS   A++ F  +P  D +++N+++S +A       ALE+F  MQ  
Sbjct: 179 FVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   +    L   +  G++  G Q+H Y+ K G     + ++ +L D+Y KC  +E+
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI-MEGSLLDLYVKCGDVET 297

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           ++ +F S+   ++   N ++ +     ++  + E+F  M   GI  ++ T    L+  + 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           +   +LG    +H  ++K+GFES++ VS  L+D YS+ G +E + +V E +   +VV +T
Sbjct: 358 TREIDLGE--QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           S++ GY ++   ++AL   + M + G+ PD +     ++GC     +++G L  ++   V
Sbjct: 416 SMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG-LQIHARIYV 474

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            G   D   ++ ++++  R G + +A    ++     D + W+ L+
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE-HKDEITWNGLV 519


>gi|326488767|dbj|BAJ97995.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 919

 Score =  351 bits (901), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 211/669 (31%), Positives = 361/669 (53%), Gaps = 13/669 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDS--YCQPNPQLNIYSSNRTIDDFVKSG 58
           M  + ++P    ++++   CT         L+ +  Y Q +    +   N  I  +++ G
Sbjct: 134 MHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVG-NALIALYLRFG 192

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            L+ A+++F EMP  D VT+N LIS   +  + + AL +++EM   G      T +S+L+
Sbjct: 193 SLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLA 252

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C++ G   +G Q+H  +L  G   +  I   L+DLY++ G  V AL++F      N+  
Sbjct: 253 ACASIGDLNKGKQLHSYLLKAGMSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVL 312

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WNLML A+ ++S   +   ++ +M A GV PN  ++  ++R C+    ++ G+Q+H   I
Sbjct: 313 WNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSI 372

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K G+ + +++V+  L+D YS  G L +A++  + +   DV+SW S+++ Y  ++   +AL
Sbjct: 373 KTGF-ESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEAL 431

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           E F  MQL    P        ++  +    +  G+QIH  V   G+    V + +AL ++
Sbjct: 432 ETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQIHSRVYVSGYS-ADVSIWNALVNL 490

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y +C   + + ++FE+   +     N +++    SG  ++A+E+F  M   G+  +  T 
Sbjct: 491 YARCGRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTF 550

Query: 419 STTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            +     S+SASANL   +    +H   IK+G  S   V+ +L+  Y +CG IE +   F
Sbjct: 551 VS-----SISASANLADIKQGKQIHATVIKTGCTSETEVANALISLYGKCGSIEDAKMQF 605

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
            ++   N V + +I+   S++G G EALD+ + M Q GL P+ VTF+ VLA C+H G+V+
Sbjct: 606 FEMSERNHVSWNTIITSCSQHGWGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVE 665

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG   F SM S +GI     HY+C++D+LGRAG LD+A + +++ P   + M+W +LL +
Sbjct: 666 EGLGYFKSMSSEHGIHPRPDHYACVVDILGRAGQLDRARKFVEEMPVSANAMVWRTLLSA 725

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           CRVH N  IG   A  L+ELEP D A Y  +SN Y+  G++     +R+    R + ++ 
Sbjct: 726 CRVHKNIEIGELAAKYLLELEPHDSASYVLLSNAYAVTGKWACRDHVRKMMKDRGVRKEP 785

Query: 656 GHSLIEVNS 664
           G S IEV +
Sbjct: 786 GRSWIEVKN 794



 Score =  216 bits (549), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 133/556 (23%), Positives = 286/556 (51%), Gaps = 8/556 (1%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           + N  ID + K G +  A+++F+++ ARD V++  ++SG  +    ++A+ LY +M   G
Sbjct: 79  AGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYARNGLGEEAVGLYHQMHCSG 138

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +  +    SSVLS C+ A  + +G  +H +V   G      +G+ L+ LY+R G    A 
Sbjct: 139 VVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETVVGNALIALYLRFGSLSLAE 198

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +F E+P  +  T+N ++    +    +  L ++ +M+  G  P+ ++   ++  C+   
Sbjct: 199 RVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSGWTPDCVTIASLLAACASIG 258

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L++GKQLHS+++K G +  +  +  +L+D Y  CG ++EA + F      +V+ WN ++
Sbjct: 259 DLNKGKQLHSYLLKAG-MSPDYIIEGSLLDLYVKCGVIVEALEIFKSGDRTNVVLWNLML 317

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
             Y     +  + +LF +M     RP+  ++   L   +  G +  G+QIH    K GF+
Sbjct: 318 VAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYAGEINLGEQIHLLSIKTGFE 377

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
              ++V   L DMY K   ++ +  + E    + +    S++   +     K+A+E F  
Sbjct: 378 -SDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTSMIAGYVQHEFCKEALETFKD 436

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M   GI  D + L++ + A +   +   G  + +H     SG+ +++++  +L++ Y+RC
Sbjct: 437 MQLFGIWPDNIGLASAISACAGIKAMRQG--QQIHSRVYVSGYSADVSIWNALVNLYARC 494

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G  + +  +FE I   + + +  +++G++++G+  EAL++   M Q G+  +  TF+  +
Sbjct: 495 GRSKEAFSLFEAIEHKDKITWNGMVSGFAQSGLYEEALEVFIKMYQAGVKYNVFTFVSSI 554

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE-ELLQQTPGGG 584
           +   +   +K+G+ +  ++    G  ++ +  + +I + G+ G ++ A+ +  + +    
Sbjct: 555 SASANLADIKQGKQIHATVIKT-GCTSETEVANALISLYGKCGSIEDAKMQFFEMSE--R 611

Query: 585 DCMMWSSLLRSCRVHG 600
           + + W++++ SC  HG
Sbjct: 612 NHVSWNTIITSCSQHG 627



 Score =  200 bits (509), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/525 (25%), Positives = 260/525 (49%), Gaps = 7/525 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R   + N  ++G      P++ L L+   V       +  F+  L  C  +  +   
Sbjct: 1   MTRRAAASLNKSLTGFLAHEDPEKLLSLFAAKVRQCRGLGSVDFACALRECRGSVKHWPL 60

Query: 130 IQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           +  IH + ++ G G +   G+ L+DLY + G   RA  +F++L  R+  +W  ML  +  
Sbjct: 61  VPVIHAKAITCGLGEDRIAGNLLIDLYAKKGLVQRARRVFEQLSARDNVSWVAMLSGYAR 120

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
               +E + +Y++M   GV P       ++  C+   L ++G+ +H+ V K G     + 
Sbjct: 121 NGLGEEAVGLYHQMHCSGVVPTPYVLSSVLSACTKAALFEQGRLVHAQVYKQGSCSETV- 179

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V NAL+  Y   GSL  A++ F  +P  D +++N+++S +A       ALE+F  M+L  
Sbjct: 180 VGNALIALYLRFGSLSLAERVFSEMPYCDRVTFNTLISRHAQCGNGESALEIFEEMRLSG 239

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
             P   +    L   +  G++  GKQ+H Y+ K G     + ++ +L D+Y KC VI  +
Sbjct: 240 WTPDCVTIASLLAACASIGDLNKGKQLHSYLLKAGMSPDYI-IEGSLLDLYVKCGVIVEA 298

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           + +F+S    ++   N ++ +     ++  + ++F  MV  G+  +E T    L+  + +
Sbjct: 299 LEIFKSGDRTNVVLWNLMLVAYGQISDLAKSFDLFCQMVAAGVRPNEFTYPCLLRTCTYA 358

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
              NLG    +H  +IK+GFES++ VS  L+D YS+ G ++ + ++ E + + +VV +TS
Sbjct: 359 GEINLG--EQIHLLSIKTGFESDMYVSGVLIDMYSKYGWLDKARRILEVLEAKDVVSWTS 416

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY ++   +EAL+  + M   G+ PD +     ++ C     +++GQ + +S   V 
Sbjct: 417 MIAGYVQHEFCKEALETFKDMQLFGIWPDNIGLASAISACAGIKAMRQGQQI-HSRVYVS 475

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           G  AD   ++ ++++  R G   +A  L +      D + W+ ++
Sbjct: 476 GYSADVSIWNALVNLYARCGRSKEAFSLFEAIE-HKDKITWNGMV 519


>gi|115488988|ref|NP_001066981.1| Os12g0552300 [Oryza sativa Japonica Group]
 gi|113649488|dbj|BAF30000.1| Os12g0552300 [Oryza sativa Japonica Group]
          Length = 1175

 Score =  351 bits (900), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 206/673 (30%), Positives = 355/673 (52%), Gaps = 21/673 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDS------YCQPNPQLNIYSSNRTIDDF 54
           M    ++P    ++++  +CT     +   L+ +      +C       I+  N  I  +
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCS-----EIFVGNAVITLY 188

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           ++ G    A+++F +MP RD VT+N LISG  +  H + AL +++EM   G+     T S
Sbjct: 189 LRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S+L+ C++ G   +G Q+H  +   G   +  +   L+DLY++ G    AL +F+     
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N+  WNLML AF +++   +   ++ +M+A G+ PN  ++  ++R C+    +D G+Q+H
Sbjct: 309 NVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH 368

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           S  +K G+ + +++V+  L+D YS  G L +A++  + +   DV+SW S+++ Y  ++  
Sbjct: 369 SLSVKTGF-ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            DAL  F  MQ C   P        ++  +    +  G QIH  +   G+  G V + +A
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS-GDVSIWNA 486

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L ++Y +C  I  + + FE    +     N L++    SG  ++A+++F  M   G+  +
Sbjct: 487 LVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHN 546

Query: 415 EVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             T  + L     SASANL   +    +H   IK+G      V  +L+  Y +CG  E +
Sbjct: 547 VFTFVSAL-----SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
              F ++   N V + +I+   S++G G EALD+ + M + G+ P+ VTF+ VLA C+H 
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V+EG   F SM   YGI     HY+C+ID+ GRAG LD+A++ +++ P   D M+W +
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +C+VH N  +G   A  L+ELEP D A Y  +SN Y+   ++    Q+R+    R +
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781

Query: 652 TRDIGHSLIEVNS 664
            ++ G S IEV +
Sbjct: 782 RKEPGRSWIEVKN 794



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 139/556 (25%), Positives = 280/556 (50%), Gaps = 12/556 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K+G +  A+++F+E+ ARD V++  ++SG  +    ++AL LY +M   G+ 
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV 140

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +    SSVLS C+ A  + +G  IH +    GF   +++G+ ++ LY+R G    A  +
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERV 200

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++P R+  T+N ++    +    +  L ++ +M+  G+ P+ ++   ++  C+    L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +G QLHS++ K G +  +  +  +L+D Y  CG +  A   F+     +V+ WN ++  
Sbjct: 261 QKGTQLHSYLFKAG-ISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +   + +  + ELF +MQ    RP+  ++   L   + T  +  G+QIH    K GF+  
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-S 378

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++V   L DMY K   +E +  V E    + +    S++   +     KDA+  F  M 
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSR 464
             GI  D + L++     ++S  A + + R    +H     SG+  ++++  +L++ Y+R
Sbjct: 439 KCGIWPDNIGLAS-----AISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYAR 493

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I  +   FE+I   + + +  +++G++++G+  EAL +   M Q G+  +  TF+  
Sbjct: 494 CGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+   +   +K+G+ +   +    G   + +  + +I + G+ G  + A+    +     
Sbjct: 554 LSASANLAEIKQGKQIHARVIKT-GHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERN 612

Query: 585 DCMMWSSLLRSCRVHG 600
           + + W++++ SC  HG
Sbjct: 613 E-VSWNTIITSCSQHG 627



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 134/526 (25%), Positives = 258/526 (49%), Gaps = 9/526 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLY-DEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           M  R   +    ++G      P + L L+ D+   HG       F+  L  C   G   +
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHG-GLGPLDFACALRACRGNGRRWQ 59

Query: 129 GI-QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            + +IH + ++ G G    +G+ L+DLY + G  + A  +F+EL  R+  +W  ML  + 
Sbjct: 60  VVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +    +E L +Y +M   GV P       ++  C+   L  +G+ +H+   K G+    I
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCS-EI 178

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV NA++  Y  CGS   A++ F  +P  D +++N+++S +A       ALE+F  MQ  
Sbjct: 179 FVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   +    L   +  G++  G Q+H Y+ K G     + ++ +L D+Y KC  +E+
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI-MEGSLLDLYVKCGDVET 297

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           ++ +F S+   ++   N ++ +     ++  + E+F  M   GI  ++ T    L+  + 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           +   +LG    +H  ++K+GFES++ VS  L+D YS+ G +E + +V E +   +VV +T
Sbjct: 358 TREIDLGE--QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           S++ GY ++   ++AL   + M + G+ PD +     ++GC     +++G L  ++   V
Sbjct: 416 SMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG-LQIHARIYV 474

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            G   D   ++ ++++  R G + +A    ++     D + W+ L+
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE-HKDEITWNGLV 519


>gi|168017714|ref|XP_001761392.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162687398|gb|EDQ73781.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 833

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 205/653 (31%), Positives = 357/653 (54%), Gaps = 5/653 (0%)

Query: 11  RTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDE 69
           RT   L   CT +   +    + D   Q   QLNIY  N  I  +   G++  A+++FD 
Sbjct: 58  RTYVKLFQRCTELRDAALGKQVRDHIIQGGRQLNIYELNTLIKLYSICGNVTEARQIFDS 117

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           +  + +VT+N LI+G  +  H K+A  L+ +MV  G++ S  TF SVL  CS+      G
Sbjct: 118 VENKTVVTWNALIAGYAQVGHVKEAFALFRQMVDEGLEPSIITFLSVLDACSSPAGLNWG 177

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            ++H +V++ GF  +  IG+ LV +Y++ G    A  +FD L  R+++T+N+M+  + + 
Sbjct: 178 KEVHAQVVTAGFVSDFRIGTALVSMYVKGGSMDDARQVFDGLHIRDVSTFNVMVGGYAKS 237

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              ++   ++ +M+  G++PN +SF  ++ GC     L  GK +H+  +  G VD +I V
Sbjct: 238 GDWEKAFELFYRMQQVGLKPNKISFLSILDGCWTPEALAWGKAVHAQCMNAGLVD-DIRV 296

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
           A +L+  Y+ CGS+  A++ FD + V DV+SW  ++  YA+   I DA  LF  MQ    
Sbjct: 297 ATSLIRMYTTCGSIEGARRVFDNMKVRDVVSWTVMIEGYAENGNIEDAFGLFATMQEEGI 356

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
           +P   +++  +N  + + N+   ++IH  V   GF    + V +AL  MY KC  I+ + 
Sbjct: 357 QPDRITYMHIMNACAISANLNHAREIHSQVDIAGFGT-DLLVSTALVHMYAKCGAIKDAR 415

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            VF++ P R +   ++++ + + +G   +A E F  M    I  D VT    L A     
Sbjct: 416 QVFDAMPRRDVVSWSAMIGAYVENGYGTEAFETFHLMKRSNIEPDGVTYINLLNACGHLG 475

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           + ++G    ++  AIK+   S++ +  +L+   ++ G +E +  +F+ +   +V+ + ++
Sbjct: 476 ALDVGM--EIYTQAIKADLVSHVPLGNALIIMNAKHGSVERARYIFDTMVRRDVITWNAM 533

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + GYS +G  REAL + + M++    P+ VTF+ VL+ C+ +G V EG+  F  +    G
Sbjct: 534 IGGYSLHGNAREALYLFDRMLKERFRPNSVTFVGVLSACSRAGFVDEGRRFFTYLLEGRG 593

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
           I    + Y CM+D+LGRAG LD+AE L++  P      +WSSLL +CR+HGN  +  R A
Sbjct: 594 IVPTVKLYGCMVDLLGRAGELDEAELLIKSMPVKPTSSIWSSLLVACRIHGNLDVAERAA 653

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
              + ++P D AVY Q+S+ Y+  G +E   ++R+   +R + ++ G + IEV
Sbjct: 654 ERCLMIDPYDGAVYVQLSHMYAAAGMWENVAKVRKVMESRGIRKEQGCTWIEV 706


>gi|328774751|gb|AEB39775.1| pentatricopeptide repeat protein 71 [Funaria hygrometrica]
          Length = 837

 Score =  350 bits (899), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 202/630 (32%), Positives = 349/630 (55%), Gaps = 4/630 (0%)

Query: 33  DSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK 92
           D   Q   QLNIY  N  I      G++  A++ FD +  + +VT+N +I+G  +  H K
Sbjct: 85  DHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQLGHVK 144

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +A  L+ +MV   ++ S  TF  VL  CS+      G + H +V+ +GF  +  IG+ LV
Sbjct: 145 EAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVSDFRIGTALV 204

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
            +Y++ G    A  +FD L +R+++T+N+M+  + +    ++  +++ +M+ EG +PN +
Sbjct: 205 SMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEGFKPNRI 264

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           SF  ++ GCS    L  GK +H+  +  G VD ++ VA AL+  Y  CGS+  A++ FD 
Sbjct: 265 SFLSILDGCSTPEALAWGKAVHAQCMNTGLVD-DVRVATALIRMYMGCGSIEGARRVFDK 323

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           + V DV+SW  ++  YA+   I DA  LF  MQ    +P   +++  +N  + + ++   
Sbjct: 324 MKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINACASSADLSLA 383

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           ++IH  V + GF    + V +AL  MY KC  I+ +  VF++   R +   ++++ + + 
Sbjct: 384 REIHSQVVRAGFGT-DLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSAMIGAYVE 442

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           +G  ++A E F  M    +  D VT    L A     + +LG    ++  AIK+   S+I
Sbjct: 443 NGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGM--EIYTQAIKADLVSHI 500

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V  +L++   + G IE +  +FE +   +VV +  ++ GYS +G  REALD+ + M++ 
Sbjct: 501 PVGNALINMNVKHGSIERARYIFENMVQRDVVTWNVMIGGYSLHGNAREALDLFDRMLKE 560

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
              P+ VTF+ VL+ C+ +G V+EG+  F+ +    GI    + Y CM+D+LGRAG LD+
Sbjct: 561 RFRPNSVTFVGVLSACSRAGFVEEGRRFFSYLLDGRGIVPTMELYGCMVDLLGRAGELDE 620

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           AE L+ + P   +  +WS+LL +CR++GN  +  R A   +  EP D AVY Q+S+ Y+ 
Sbjct: 621 AELLINRMPLKPNSSIWSTLLAACRIYGNLDVAERAAERCLMSEPYDGAVYVQLSHMYAA 680

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            G +E   ++R+   +R + ++ G + IEV
Sbjct: 681 AGMWENVAKVRKVMESRGVRKEQGCTWIEV 710



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 134/481 (27%), Positives = 243/481 (50%), Gaps = 22/481 (4%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G Q+   ++  G  LN+Y  + L+ L+   G  + A   FD +  + + TWN ++  + +
Sbjct: 80  GKQVRDHIIQSGRQLNIYELNTLIKLHSICGNMLEARQTFDSVENKTVVTWNAIIAGYAQ 139

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
           L    E   ++ +M  E +EP+ ++F  ++  CS    L  GK+ H+ VIK+G+V  +  
Sbjct: 140 LGHVKEAFALFRQMVDEAMEPSIITFLIVLDACSSPAGLKLGKEFHAQVIKVGFVS-DFR 198

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           +  ALV  Y   GS+  A++ FD +   DV ++N ++  YA       A +LF+RMQ   
Sbjct: 199 IGTALVSMYVKGGSMDGARQVFDGLYKRDVSTFNVMIGGYAKSGDGEKAFQLFYRMQQEG 258

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P+  SF+  L+  S    + +GK +H      G     V V +AL  MY  C  IE +
Sbjct: 259 FKPNRISFLSILDGCSTPEALAWGKAVHAQCMNTGLVD-DVRVATALIRMYMGCGSIEGA 317

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VF+    R +     ++     + NI+DA  +F  M +EGI  D +T    + A   +
Sbjct: 318 RRVFDKMKVRDVVSWTVMIRGYAENSNIEDAFGLFATMQEEGIQPDRITYIHIINA--CA 375

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           +SA+L   R +H   +++GF +++ V  +L+  Y++CG I+ + QVF+ +   +VV +++
Sbjct: 376 SSADLSLAREIHSQVVRAGFGTDLLVDTALVHMYAKCGAIKDARQVFDAMSRRDVVSWSA 435

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++  Y  NG G EA +   +M +  + PD VT++ +L  C H G +  G  ++       
Sbjct: 436 MIGAYVENGCGEEAFETFHLMKRNNVEPDVVTYINLLNACGHLGALDLGMEIYTQ----- 490

Query: 549 GIDADRQHY----SCMIDMLGRAGILDKA----EELLQQTPGGGDCMMWSSLLRSCRVHG 600
            I AD   +    + +I+M  + G +++A    E ++Q+     D + W+ ++    +HG
Sbjct: 491 AIKADLVSHIPVGNALINMNVKHGSIERARYIFENMVQR-----DVVTWNVMIGGYSLHG 545

Query: 601 N 601
           N
Sbjct: 546 N 546


>gi|222617261|gb|EEE53393.1| hypothetical protein OsJ_36441 [Oryza sativa Japonica Group]
          Length = 1151

 Score =  350 bits (897), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 206/673 (30%), Positives = 355/673 (52%), Gaps = 21/673 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDS------YCQPNPQLNIYSSNRTIDDF 54
           M    ++P    ++++  +CT     +   L+ +      +C       I+  N  I  +
Sbjct: 134 MHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCS-----EIFVGNAVITLY 188

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           ++ G    A+++F +MP RD VT+N LISG  +  H + AL +++EM   G+     T S
Sbjct: 189 LRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTIS 248

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S+L+ C++ G   +G Q+H  +   G   +  +   L+DLY++ G    AL +F+     
Sbjct: 249 SLLAACASLGDLQKGTQLHSYLFKAGISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRT 308

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N+  WNLML AF +++   +   ++ +M+A G+ PN  ++  ++R C+    +D G+Q+H
Sbjct: 309 NVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIH 368

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           S  +K G+ + +++V+  L+D YS  G L +A++  + +   DV+SW S+++ Y  ++  
Sbjct: 369 SLSVKTGF-ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECC 427

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            DAL  F  MQ C   P        ++  +    +  G QIH  +   G+  G V + +A
Sbjct: 428 KDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQGLQIHARIYVSGYS-GDVSIWNA 486

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L ++Y +C  I  + + FE    +     N L++    SG  ++A+++F  M   G+  +
Sbjct: 487 LVNLYARCGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHN 546

Query: 415 EVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             T  + L     SASANL   +    +H   IK+G      V  +L+  Y +CG  E +
Sbjct: 547 VFTFVSAL-----SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISLYGKCGSFEDA 601

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
              F ++   N V + +I+   S++G G EALD+ + M + G+ P+ VTF+ VLA C+H 
Sbjct: 602 KMEFSEMSERNEVSWNTIITSCSQHGRGLEALDLFDQMKKEGIKPNDVTFIGVLAACSHV 661

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V+EG   F SM   YGI     HY+C+ID+ GRAG LD+A++ +++ P   D M+W +
Sbjct: 662 GLVEEGLSYFKSMSDEYGIRPRPDHYACVIDIFGRAGQLDRAKKFIEEMPIAADAMVWRT 721

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +C+VH N  +G   A  L+ELEP D A Y  +SN Y+   ++    Q+R+    R +
Sbjct: 722 LLSACKVHKNIEVGEFAAKHLLELEPHDSASYVLLSNAYAVTEKWANRDQVRKMMRDRGV 781

Query: 652 TRDIGHSLIEVNS 664
            ++ G S IEV +
Sbjct: 782 RKEPGRSWIEVKN 794



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 138/556 (24%), Positives = 279/556 (50%), Gaps = 12/556 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K+G +  A+++F+E+ ARD V++  ++SG  +    ++AL LY +M   G+ 
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALGLYRQMHRAGVV 140

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +    SSVLS C+ A  + +G  IH +    GF   +++G+ ++ LY+R G    A  +
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCSEIFVGNAVITLYLRCGSFRLAERV 200

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++P R+  T+N ++    +    +  L ++ +M+  G+ P+ ++   ++  C+    L
Sbjct: 201 FCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFSGLSPDCVTISSLLAACASLGDL 260

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +G QLHS++ K G +  +  +  +L+D Y  CG +  A   F+     +V+ WN ++  
Sbjct: 261 QKGTQLHSYLFKAG-ISSDYIMEGSLLDLYVKCGDVETALVIFNSSDRTNVVLWNLMLVA 319

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +   + +  + ELF +MQ    RP+  ++   L   + T  +  G+QIH    K GF+  
Sbjct: 320 FGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTCTREIDLGEQIHSLSVKTGFE-S 378

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++V   L DMY K   +E +  V E    + +    S++   +     KDA+  F  M 
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHECCKDALAAFKEMQ 438

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSR 464
             GI  D + L++     ++S  A + + R    +H     SG+  ++++  +L++ Y+R
Sbjct: 439 KCGIWPDNIGLAS-----AISGCAGINAMRQGLQIHARIYVSGYSGDVSIWNALVNLYAR 493

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I  +   FE++   + +    +++G++++G+  EAL +   M Q G+  +  TF+  
Sbjct: 494 CGRIREAFSSFEEMELKDGITGNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+   +   +K+G+ +   +    G   + +  + +I + G+ G  + A+    +     
Sbjct: 554 LSASANLAEIKQGKQIHARVIKT-GHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERN 612

Query: 585 DCMMWSSLLRSCRVHG 600
           + + W++++ SC  HG
Sbjct: 613 E-VSWNTIITSCSQHG 627



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 131/506 (25%), Positives = 250/506 (49%), Gaps = 8/506 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLY-DEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           M  R   +    ++G      P + L L+ D+   HG       F+  L  C   G   +
Sbjct: 1   MTRRGAASLGRTLAGFLAHEDPAKVLSLFADKARQHG-GLGPLDFACALRACRGNGRRWQ 59

Query: 129 GI-QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            + +IH + ++ G G    +G+ L+DLY + G  + A  +F+EL  R+  +W  ML  + 
Sbjct: 60  VVPEIHAKAVTRGLGKYRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +    +E L +Y +M   GV P       ++  C+   L  +G+ +H+   K G+    I
Sbjct: 120 QNGLGEEALGLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRLIHAQGYKHGFCS-EI 178

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV NA++  Y  CGS   A++ F  +P  D +++N+++S +A       ALE+F  MQ  
Sbjct: 179 FVGNAVITLYLRCGSFRLAERVFCDMPHRDTVTFNTLISGHAQCGHGEHALEIFEEMQFS 238

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   +    L   +  G++  G Q+H Y+ K G     + ++ +L D+Y KC  +E+
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGISSDYI-MEGSLLDLYVKCGDVET 297

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           ++ +F S+   ++   N ++ +     ++  + E+F  M   GI  ++ T    L+  + 
Sbjct: 298 ALVIFNSSDRTNVVLWNLMLVAFGQINDLAKSFELFCQMQAAGIRPNQFTYPCILRTCTC 357

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           +   +LG    +H  ++K+GFES++ VS  L+D YS+ G +E + +V E +   +VV +T
Sbjct: 358 TREIDLGE--QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           S++ GY ++   ++AL   + M + G+ PD +     ++GC     +++G L  ++   V
Sbjct: 416 SMIAGYVQHECCKDALAAFKEMQKCGIWPDNIGLASAISGCAGINAMRQG-LQIHARIYV 474

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKA 573
            G   D   ++ ++++  R G + +A
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREA 500


>gi|357133320|ref|XP_003568274.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 919

 Score =  349 bits (896), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 207/623 (33%), Positives = 337/623 (54%), Gaps = 10/623 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +  N  I  +++      A ++F +M   D VT+N LISG  +  H  +AL ++DEM   
Sbjct: 179 FVGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLS 238

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G+   + T +S+L+ CS  G   +G Q+H  +L  G  L+  +   L+DLY++ G    A
Sbjct: 239 GLSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYIMEGSLLDLYVKSGDIEEA 298

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           L +FD     N+  WNLML A+ ++    +   ++ +M A GV PN  ++  M+R C+  
Sbjct: 299 LQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHT 358

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             +  G+Q+HS  IK G+   +++V+  L+D YS  G L +A++  D I   DV+SW S+
Sbjct: 359 GEIGLGEQIHSLTIKNGF-QSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSM 417

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y  ++   +ALE F  MQ C   P        ++  +    V+ G QIH  V   G+
Sbjct: 418 IAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQIHARVYVSGY 477

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               V + + L  +Y +C + + + + FE+   +     N L++    SG  ++A+++F 
Sbjct: 478 S-ADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFM 536

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDA 461
            M   G   +  T  +     S+SASANL   +    +H   IK+G+ S   +S +L+  
Sbjct: 537 KMDQAGAKYNVFTFVS-----SISASANLADIKQGKQIHARVIKTGYTSETEISNALISL 591

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +CG IE +   F ++   N V + +I+   S++G G EALD+ + M Q+GL P  VTF
Sbjct: 592 YGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALDLFDQMKQQGLKPSDVTF 651

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL  C+H G+V+EG   F SM + +GI     HY+C++D+LGRAG LD+A+  +++ P
Sbjct: 652 VGVLTACSHVGLVEEGLCYFKSMSNEHGIHPRPDHYACVVDILGRAGQLDRAKRFVEEMP 711

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D M+W +LL +C+VH N  IG   A  L+ELEP D A Y  +SN Y+  G++    Q
Sbjct: 712 IPADSMVWRTLLSACKVHKNLEIGEFAAKHLLELEPHDSASYVLLSNAYAVTGKWASRDQ 771

Query: 642 IRETALARKLTRDIGHSLIEVNS 664
           IR+    R + ++ G S IEV +
Sbjct: 772 IRKIMKDRGVRKEPGRSWIEVKN 794



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 135/554 (24%), Positives = 278/554 (50%), Gaps = 8/554 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K G +  A+++F+E+  RD V++  ++SG  +    ++A+ LY EM   G+ 
Sbjct: 81  NLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQNGLGEEAVRLYREMHRSGVV 140

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +    SS+LS C+    +  G  IH +V   GF    ++G+ L+ LY+R      A  +
Sbjct: 141 PTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFSETFVGNALISLYLRCRSFRLADRV 200

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++   +  T+N ++    +    D  L ++++M+  G+ P+ ++   ++  CS    L
Sbjct: 201 FCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSGLSPDSVTIASLLAACSAVGDL 260

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +GKQLHS+++K G + ++  +  +L+D Y   G + EA + FD     +V+ WN ++  
Sbjct: 261 RKGKQLHSYLLKAG-MSLDYIMEGSLLDLYVKSGDIEEALQIFDSGDRTNVVLWNLMLVA 319

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y   D +  + ++F+RM     RP+  ++   L   + TG +  G+QIH    K GF   
Sbjct: 320 YGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGF-QS 378

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++V   L DMY K   ++ +  + +    + +    S++   +     K+A+E F  M 
Sbjct: 379 DMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQ 438

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             GI  D + L++ + A +   + + GS   +H     SG+ +++++   L+  Y+RCG 
Sbjct: 439 ACGIWPDNIGLASAISACAGIKAVHQGS--QIHARVYVSGYSADVSIWNGLVYLYARCGI 496

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
            + +   FE I     + +  +++G++++G+  EAL +   M Q G   +  TF+  ++ 
Sbjct: 497 SKEAFSSFEAIEHKEGITWNGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISA 556

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE-ELLQQTPGGGDC 586
             +   +K+G+ +   +    G  ++ +  + +I + G+ G ++ A+ +  + T    + 
Sbjct: 557 SANLADIKQGKQIHARVIKT-GYTSETEISNALISLYGKCGSIEDAKMDFFEMTK--RNE 613

Query: 587 MMWSSLLRSCRVHG 600
           + W++++  C  HG
Sbjct: 614 VSWNTIITCCSQHG 627



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/505 (25%), Positives = 241/505 (47%), Gaps = 6/505 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R   ++N  ++G      P++ L L+       +   A  F+  L  C  +G     
Sbjct: 1   MTPRGAASFNRPLAGFLAPDDPEKLLPLFAAKCRQYMVLGAVDFACALRACRGSGRRWPL 60

Query: 130 I-QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           + +IH + +  G      IG+ L+DLY + G   RA  +F+EL  R+  +W  +L  + +
Sbjct: 61  VPEIHAKAIICGLSGYRIIGNLLIDLYAKKGFVRRARRVFEELSVRDNVSWVAVLSGYAQ 120

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
               +E +R+Y +M   GV P       ++  C+   L   G+ +H  V K G+     F
Sbjct: 121 NGLGEEAVRLYREMHRSGVVPTPYVLSSILSACTKTELFQLGRLIHVQVYKQGFFS-ETF 179

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V NAL+  Y  C S   A + F  +   D +++N+++S +A       AL +F  MQL  
Sbjct: 180 VGNALISLYLRCRSFRLADRVFCDMLYCDSVTFNTLISGHAQCGHGDRALGIFDEMQLSG 239

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
             P   +    L   S  G++  GKQ+H Y+ K G     + ++ +L D+Y K   IE +
Sbjct: 240 LSPDSVTIASLLAACSAVGDLRKGKQLHSYLLKAGMSLDYI-MEGSLLDLYVKSGDIEEA 298

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           + +F+S    ++   N ++ +     ++  + ++F  M+  G+  ++ T    L+  + +
Sbjct: 299 LQIFDSGDRTNVVLWNLMLVAYGQIDDLAKSFDIFYRMLAAGVRPNKFTYPCMLRTCTHT 358

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
               LG    +H   IK+GF+S++ VS  L+D YS+ G ++ + ++ + I   +VV +TS
Sbjct: 359 GEIGLG--EQIHSLTIKNGFQSDMYVSGVLIDMYSKYGWLDKAQRILDMIEEKDVVSWTS 416

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY ++   +EAL+  + M   G+ PD +     ++ C     V +G  + ++   V 
Sbjct: 417 MIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISACAGIKAVHQGSQI-HARVYVS 475

Query: 549 GIDADRQHYSCMIDMLGRAGILDKA 573
           G  AD   ++ ++ +  R GI  +A
Sbjct: 476 GYSADVSIWNGLVYLYARCGISKEA 500



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/381 (27%), Positives = 185/381 (48%), Gaps = 10/381 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           ML+  + P   T   +  TCT    +     + S    N  Q ++Y S   ID + K G 
Sbjct: 336 MLAAGVRPNKFTYPCMLRTCTHTGEIGLGEQIHSLTIKNGFQSDMYVSGVLIDMYSKYGW 395

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A+++ D +  +D+V++  +I+G  +    K+AL  + EM + GI       +S +S 
Sbjct: 396 LDKAQRILDMIEEKDVVSWTSMIAGYVQHEFCKEALETFKEMQACGIWPDNIGLASAISA 455

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+      +G QIH RV   G+  ++ I + LV LY R G S  A   F+ +  +   TW
Sbjct: 456 CAGIKAVHQGSQIHARVYVSGYSADVSIWNGLVYLYARCGISKEAFSSFEAIEHKEGITW 515

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  F +    +E L+++ KM   G + N  +F   +   +    + +GKQ+H+ VIK
Sbjct: 516 NGLISGFAQSGLYEEALKVFMKMDQAGAKYNVFTFVSSISASANLADIKQGKQIHARVIK 575

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+      ++NAL+  Y  CGS+ +AK  F  +   + +SWN+I++  + +    +AL+
Sbjct: 576 TGYTS-ETEISNALISLYGKCGSIEDAKMDFFEMTKRNEVSWNTIITCCSQHGRGLEALD 634

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ----SAL 355
           LF +M+    +PS  +FV  L   S  G V  G     Y   +  +HG +H +    + +
Sbjct: 635 LFDQMKQQGLKPSDVTFVGVLTACSHVGLVEEGL---CYFKSMSNEHG-IHPRPDHYACV 690

Query: 356 TDMYGKCNVIESSVAVFESAP 376
            D+ G+   ++ +    E  P
Sbjct: 691 VDILGRAGQLDRAKRFVEEMP 711


>gi|359497798|ref|XP_003635646.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 809

 Score =  349 bits (896), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/667 (31%), Positives = 372/667 (55%), Gaps = 16/667 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P + T + L  +C          L+     Q   +L+    N  I  + K G   +A+ +
Sbjct: 24  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 83

Query: 67  FDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           F+ M   RD+V+++ ++S         QA++ + +M+  G   +   F++V+  CSNA +
Sbjct: 84  FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 143

Query: 126 YTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMR-MGPSVRALDLFDELPERNLATWNLML 183
              G  I+  V+  G+   ++ +G  L+D++++  G    A  +FD++PERNL TW LM+
Sbjct: 144 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 203

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
             F +L    + + ++  M+  G  P+  ++  ++  C+   LL  GKQLHS VI+LG +
Sbjct: 204 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG-L 262

Query: 244 DVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVISWNSIVSIYADY-DLIFDALE 299
            +++ V  +LVD Y+ C   GS+ +++K F+ +P  +V+SW +I++ Y    +   +A+E
Sbjct: 263 ALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIE 322

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH-VQSALTDM 358
           LF +M     RP+  SF   L       + Y G+Q++ Y  KLG    SV+ V ++L  M
Sbjct: 323 LFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGI--ASVNCVGNSLISM 380

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y +   +E +   F+    ++L   N+++     +   ++A  +F  + D GIG+   T 
Sbjct: 381 YARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 440

Query: 419 STTLK-ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           ++ L  A S+ A   +G    +H   +K G++SN  +  +L+  YSRCG+IE + QVF +
Sbjct: 441 ASLLSGAASIGA---MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 497

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +   NV+ +TS++ G++++G    AL+M   M++ G  P+++T++ VL+ C+H GM+ EG
Sbjct: 498 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 557

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           Q  FNSM   +GI    +HY+CM+D+LGR+G+L +A E +   P   D ++W +LL +CR
Sbjct: 558 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 617

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           VHGN  +GR  A +++E EP D A Y  +SN ++  G+++  ++IR++   R L ++ G 
Sbjct: 618 VHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGC 677

Query: 658 SLIEVNS 664
           S IEV +
Sbjct: 678 SWIEVEN 684



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 131/281 (46%), Gaps = 16/281 (5%)

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           L  G +  A      M  +    D  T S  LK+     +  LG  +L+H   ++SG E 
Sbjct: 2   LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLG--KLVHRKLMQSGLEL 59

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVM 509
           +  V  +L+  YS+CG  E +  +FE + +  ++V ++++++ ++ N M  +A+     M
Sbjct: 60  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 119

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR-AG 568
           ++ G  P++  F  V+  C+++     G++++  +     ++AD      +IDM  + +G
Sbjct: 120 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 179

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE-----PVDFAVY 623
            L  A ++  + P   + + W+ ++      G     R   ++ +++E     P  F  Y
Sbjct: 180 DLGSAYKVFDKMP-ERNLVTWTLMITRFAQLG---CARDAIDLFLDMELSGYVPDRF-TY 234

Query: 624 SQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
           S V +  +E+G   +  Q+    +   L  D  +G SL+++
Sbjct: 235 SSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDM 275


>gi|296083564|emb|CBI23556.3| unnamed protein product [Vitis vinifera]
          Length = 827

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 209/667 (31%), Positives = 372/667 (55%), Gaps = 16/667 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P + T + L  +C          L+     Q   +L+    N  I  + K G   +A+ +
Sbjct: 42  PDLTTYSILLKSCIRFRNFQLGKLVHRKLMQSGLELDSVVLNTLISLYSKCGDTETARLI 101

Query: 67  FDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           F+ M   RD+V+++ ++S         QA++ + +M+  G   +   F++V+  CSNA +
Sbjct: 102 FEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDMLELGFYPNEYCFAAVIRACSNANY 161

Query: 126 YTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMR-MGPSVRALDLFDELPERNLATWNLML 183
              G  I+  V+  G+   ++ +G  L+D++++  G    A  +FD++PERNL TW LM+
Sbjct: 162 AWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSGDLGSAYKVFDKMPERNLVTWTLMI 221

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
             F +L    + + ++  M+  G  P+  ++  ++  C+   LL  GKQLHS VI+LG +
Sbjct: 222 TRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTELGLLALGKQLHSRVIRLG-L 280

Query: 244 DVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVISWNSIVSIYADY-DLIFDALE 299
            +++ V  +LVD Y+ C   GS+ +++K F+ +P  +V+SW +I++ Y    +   +A+E
Sbjct: 281 ALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSWTAIITAYVQSGECDKEAIE 340

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH-VQSALTDM 358
           LF +M     RP+  SF   L       + Y G+Q++ Y  KLG    SV+ V ++L  M
Sbjct: 341 LFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYAVKLGI--ASVNCVGNSLISM 398

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y +   +E +   F+    ++L   N+++     +   ++A  +F  + D GIG+   T 
Sbjct: 399 YARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTF 458

Query: 419 STTLK-ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           ++ L  A S+ A   +G    +H   +K G++SN  +  +L+  YSRCG+IE + QVF +
Sbjct: 459 ASLLSGAASIGA---MGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNE 515

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +   NV+ +TS++ G++++G    AL+M   M++ G  P+++T++ VL+ C+H GM+ EG
Sbjct: 516 MEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEG 575

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           Q  FNSM   +GI    +HY+CM+D+LGR+G+L +A E +   P   D ++W +LL +CR
Sbjct: 576 QKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACR 635

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           VHGN  +GR  A +++E EP D A Y  +SN ++  G+++  ++IR++   R L ++ G 
Sbjct: 636 VHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWKDVVKIRKSMKERNLIKEAGC 695

Query: 658 SLIEVNS 664
           S IEV +
Sbjct: 696 SWIEVEN 702



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 62/281 (22%), Positives = 131/281 (46%), Gaps = 16/281 (5%)

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           L  G +  A      M  +    D  T S  LK+     +  LG  +L+H   ++SG E 
Sbjct: 20  LDVGRLHHAFSTLDLMTQQNAPPDLTTYSILLKSCIRFRNFQLG--KLVHRKLMQSGLEL 77

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVM 509
           +  V  +L+  YS+CG  E +  +FE + +  ++V ++++++ ++ N M  +A+     M
Sbjct: 78  DSVVLNTLISLYSKCGDTETARLIFEGMGNKRDLVSWSAMVSCFANNSMEWQAIWTFLDM 137

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR-AG 568
           ++ G  P++  F  V+  C+++     G++++  +     ++AD      +IDM  + +G
Sbjct: 138 LELGFYPNEYCFAAVIRACSNANYAWVGEIIYGFVVKTGYLEADVCVGCELIDMFVKGSG 197

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE-----PVDFAVY 623
            L  A ++  + P   + + W+ ++      G     R   ++ +++E     P  F  Y
Sbjct: 198 DLGSAYKVFDKMP-ERNLVTWTLMITRFAQLG---CARDAIDLFLDMELSGYVPDRF-TY 252

Query: 624 SQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
           S V +  +E+G   +  Q+    +   L  D  +G SL+++
Sbjct: 253 SSVLSACTELGLLALGKQLHSRVIRLGLALDVCVGCSLVDM 293


>gi|225456755|ref|XP_002268980.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic [Vitis vinifera]
 gi|297733984|emb|CBI15231.3| unnamed protein product [Vitis vinifera]
          Length = 893

 Score =  349 bits (895), Expect = 3e-93,   Method: Compositional matrix adjust.
 Identities = 201/658 (30%), Positives = 358/658 (54%), Gaps = 15/658 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
            +P   T +++   C ++  L     +  +  +     +++     ID + K   ++ A 
Sbjct: 244 FMPNSFTFSSILTACAALEELEFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAV 303

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K F  MP R++V++  +ISG  +      A + + EM   G K +  T +SVL+ C+   
Sbjct: 304 KEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPV 363

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE-RNLATWNLML 183
              E +Q+H  +   GF L+  + S L+++Y ++G    +  +F E+   +NLA W +M+
Sbjct: 364 MIKEAVQLHSWIFKTGFYLDSNVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMI 423

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE---GKQLHSHVIKL 240
            AF +       + ++ +M  EG+ P+   FC      S+  ++D    G+ +H +++K+
Sbjct: 424 SAFAQSGSTGRAVELFQRMLQEGLRPD--KFC----SSSVLSIIDSLSLGRLIHCYILKI 477

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G +  +I V ++L   YS CGSL E+   F+ +P  D +SW S+++ ++++D    A++L
Sbjct: 478 G-LFTDISVGSSLFTMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQL 536

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F  M L   RP   +    L   S   ++  GK++HGY  +       V V  AL +MY 
Sbjct: 537 FREMLLEEIRPDQMTLTAALTACSALHSLEKGKEVHGYALRARVGK-EVLVGGALVNMYS 595

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           KC  I  +  VF+  P +    C+SL++    +G I+DA+ +F  +    + +D  T+S+
Sbjct: 596 KCGAIVLARRVFDMLPQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSS 655

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            + A+++  S ++G+   LH C  K G  + ++V  SL+  YS+CG I+  H+VFE+I  
Sbjct: 656 VIGAVAILNSLDIGT--QLHACVTKMGLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIEK 713

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           P+++ +T+++  Y+++G G EAL + ++M + G  PD VTF+ VL+ C+H+GMV+EG   
Sbjct: 714 PDLISWTAMIVSYAQHGKGAEALKVYDLMRKEGTKPDSVTFVGVLSACSHNGMVEEGYSH 773

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            NSM   YGI+    HY+CM+D+LGR+G L +AE  +   P   D ++W  LL +C+VHG
Sbjct: 774 LNSMAKEYGIEPGYYHYACMVDLLGRSGRLKEAERFINNMPIEPDALLWGILLAACKVHG 833

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           +  +GR  A  ++ELEP +   Y  +SN  +++G +E  M+IR       + ++ G S
Sbjct: 834 DIELGRLAAKRVIELEPCEAGAYVTLSNICADMGWWEDVMKIRSLMEGTGVKKEPGWS 891



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 139/501 (27%), Positives = 256/501 (51%), Gaps = 8/501 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q N + +N  +  + KS  +  A +LFD+ P  +++++N+LISGC +    + +   + +
Sbjct: 78  QSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILISGCNQNFSFEDSWRNFCK 137

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G   +  T+ SVLS C+  G    G  ++   L  GF  N Y+ + ++DL+ ++  
Sbjct: 138 MRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCS 197

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL +F ++   N+  WN ++    +       L ++ +M      PN  +F  ++  
Sbjct: 198 FEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTA 257

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L+ G+ +   VIK G    ++FV  A++D Y+ C  + +A K F  +P+ +V+S
Sbjct: 258 CAALEELEFGRGVQGWVIKCG-AGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVS 316

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +I+S +   D    A   F  M+   ++ +  +    L   +    +    Q+H ++ 
Sbjct: 317 WTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIF 376

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDA 399
           K GF   S +V SAL +MY K  V++ S  VF E    ++L     ++++   SG+   A
Sbjct: 377 KTGFYLDS-NVSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRA 435

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           VE+F  M+ EG+  D+   S+    LS+  S +LG  RL+HC  +K G  ++I+V  SL 
Sbjct: 436 VELFQRMLQEGLRPDKFCSSSV---LSIIDSLSLG--RLIHCYILKIGLFTDISVGSSLF 490

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             YS+CG +E S+ VFE++P  + V + S++ G+S +    +A+ +   M+   + PD++
Sbjct: 491 TMYSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQM 550

Query: 520 TFLCVLAGCNHSGMVKEGQLV 540
           T    L  C+    +++G+ V
Sbjct: 551 TLTAALTACSALHSLEKGKEV 571



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 154/614 (25%), Positives = 292/614 (47%), Gaps = 25/614 (4%)

Query: 8   PRVRTITTLAPTCTSI-VPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T  ++   CT++  PL   L+     +     N Y     ID F K      A ++
Sbjct: 145 PNQFTYGSVLSACTALGSPLYGELVYSLALKNGFFSNGYVRAGMIDLFAKLCSFEDALRV 204

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F ++   ++V +N +ISG  K R    AL L+ +M       ++ TFSS+L+ C+     
Sbjct: 205 FQDVLCENVVCWNAIISGAVKNRENWVALDLFCQMCCRFFMPNSFTFSSILTACAALEEL 264

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  +   V+  G G ++++G+ ++DLY +     +A+  F  +P RN+ +W  ++  F
Sbjct: 265 EFGRGVQGWVIKCGAGEDVFVGTAIIDLYAKCRDMDQAVKEFLRMPIRNVVSWTTIISGF 324

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG-WVDV 245
            +          + +M+  G + N  +   ++  C+  +++ E  QLHS + K G ++D 
Sbjct: 325 VQKDDSISAFHFFKEMRKVGEKINNYTITSVLTACTEPVMIKEAVQLHSWIFKTGFYLDS 384

Query: 246 NIFVANALVDFYSACGSLIEAKKSF-DFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           N  V++AL++ YS  G +  +++ F +     ++  W  ++S +A       A+ELF RM
Sbjct: 385 N--VSSALINMYSKIGVVDLSERVFREMESTKNLAMWAVMISAFAQSGSTGRAVELFQRM 442

Query: 305 QLCRKRP------SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
                RP      S+ S ++ L+          G+ IH Y+ K+G     + V S+L  M
Sbjct: 443 LQEGLRPDKFCSSSVLSIIDSLS---------LGRLIHCYILKIGL-FTDISVGSSLFTM 492

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y KC  +E S  VFE  P +      S++T      + + AV++F  M+ E I  D++TL
Sbjct: 493 YSKCGSLEESYTVFEQMPDKDNVSWASMITGFSEHDHAEQAVQLFREMLLEEIRPDQMTL 552

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           +  L A S   S   G  + +H  A+++     + V  +L++ YS+CG I L+ +VF+ +
Sbjct: 553 TAALTACSALHSLEKG--KEVHGYALRARVGKEVLVGGALVNMYSKCGAIVLARRVFDML 610

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           P  +    +S+++GY++NG   +AL +   +    L  D  T   V+        +  G 
Sbjct: 611 PQKDQFSCSSLVSGYAQNGYIEDALLLFHEIRMADLWIDSFTVSSVIGAVAILNSLDIGT 670

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
            +   +  + G++A+    S ++ M  + G +D+  ++ +Q     D + W++++ S   
Sbjct: 671 QLHACVTKM-GLNAEVSVGSSLVTMYSKCGSIDECHKVFEQIE-KPDLISWTAMIVSYAQ 728

Query: 599 HGNEIIGRRVANIL 612
           HG      +V +++
Sbjct: 729 HGKGAEALKVYDLM 742



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 90/383 (23%), Positives = 184/383 (48%), Gaps = 8/383 (2%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L   K LH+H +K   +  N F+ N+L+ +Y    S++ A + FD  P  +VISWN ++S
Sbjct: 61  LRNTKILHAHFLKTAILQSNTFMTNSLMGWYCKSNSMVHALRLFDKTPHPNVISWNILIS 120

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
                    D+   F +M+     P+  ++   L+  +  G+  +G+ ++    K GF  
Sbjct: 121 GCNQNFSFEDSWRNFCKMRFSGFDPNQFTYGSVLSACTALGSPLYGELVYSLALKNGF-F 179

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            + +V++ + D++ K    E ++ VF+     ++ C N++++  + +     A+++F  M
Sbjct: 180 SNGYVRAGMIDLFAKLCSFEDALRVFQDVLCENVVCWNAIISGAVKNRENWVALDLFCQM 239

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
                  +  T S+ L A +       G  R +    IK G   ++ V  +++D Y++C 
Sbjct: 240 CCRFFMPNSFTFSSILTACAALEELEFG--RGVQGWVIKCGAGEDVFVGTAIIDLYAKCR 297

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            ++ + + F ++P  NVV +T+I++G+ +      A    + M + G   +  T   VL 
Sbjct: 298 DMDQAVKEFLRMPIRNVVSWTTIISGFVQKDDSISAFHFFKEMRKVGEKINNYTITSVLT 357

Query: 527 GCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
            C    M+KE  QL     K+ + +D++    S +I+M  + G++D +E + ++     +
Sbjct: 358 ACTEPVMIKEAVQLHSWIFKTGFYLDSNVS--SALINMYSKIGVVDLSERVFREMESTKN 415

Query: 586 CMMWSSLLRSCRVHGNEIIGRRV 608
             MW+ ++ +    G+   GR V
Sbjct: 416 LAMWAVMISAFAQSGS--TGRAV 436


>gi|328774757|gb|AEB39778.1| pentatricopeptide repeat protein 77 [Funaria hygrometrica]
          Length = 1161

 Score =  348 bits (893), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 191/655 (29%), Positives = 356/655 (54%), Gaps = 7/655 (1%)

Query: 12   TITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
            T  ++   C++   L +  L+ S+  +     ++   N  I  + + G L  A++LF+ M
Sbjct: 387  TYLSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTM 446

Query: 71   PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
            P RD++++N +I+G  +     +A+ LY +M S G+K    TF  +LS C+N+  Y++G 
Sbjct: 447  PKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGK 506

Query: 131  QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
             IH  +L  G   N ++ + L+++Y R G  + A ++F+    R++ +WN M+    +  
Sbjct: 507  MIHEDILRSGIKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHG 566

Query: 191  RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG-WVDVNIFV 249
              +   +++ +MK EG+EP+ ++F  ++ GC     L+ G+Q+H  +I+ G  +DVN+  
Sbjct: 567  SYEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQLDVNL-- 624

Query: 250  ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             NAL++ Y  CGSL +A + F  +   +V+SW +++  +AD      A ELF++MQ    
Sbjct: 625  GNALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGF 684

Query: 310  RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            +P   +F   L     +  +  GK++  ++   G++     V +AL   Y K   +  + 
Sbjct: 685  KPVKSTFSSILKACMSSACLDEGKKVIAHILNSGYEL-DTGVGNALISAYSKSGSMTDAR 743

Query: 370  AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
             VF+  P R +   N ++     +G    A++    M ++G+ L++ +  + L A S  +
Sbjct: 744  KVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFS 803

Query: 430  SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            +   G  + +H   +K   + ++ V  +L+  Y++CG +E + +VF+     NVV + ++
Sbjct: 804  ALEEG--KRVHAEIVKRKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFTEKNVVTWNAM 861

Query: 490  MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
            +N Y+++G+  +ALD    M + G+ PD  TF  +L+ CNHSG+V EG  +F+S++S +G
Sbjct: 862  INAYAQHGLASKALDFFNCMDKEGIKPDGSTFTSILSACNHSGLVMEGNRIFSSLESQHG 921

Query: 550  IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
            +    +HY C++ +LGRAG   +AE L+ Q P   D  +W +LL +CR+HGN  +    A
Sbjct: 922  LSPTIEHYGCLVGLLGRAGRFQEAETLINQMPFPPDAAVWETLLGACRIHGNVALAEHAA 981

Query: 610  NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            N  ++L   + AVY  +SN Y+  G ++   +IR     R + ++ G S IEV++
Sbjct: 982  NNALKLNARNPAVYVLLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 1036



 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/547 (27%), Positives = 293/547 (53%), Gaps = 6/547 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           FV+ G +  AK+  +    RD+V YN LI+   +  H ++A   Y +M S G+  + +T+
Sbjct: 329 FVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTY 388

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            SVL+ CS +     G  IH  +  +G   ++ IG+ L+ +Y R G   RA +LF+ +P+
Sbjct: 389 LSVLNACSTSKALGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPRARELFNTMPK 448

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+L +WN ++  +       E +++Y +M++EGV+P  ++F +++  C+      +GK +
Sbjct: 449 RDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDGKMI 508

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  +++ G +  N  +ANAL++ Y  CGS++EA+  F+     D+ISWNS+++ +A +  
Sbjct: 509 HEDILRSG-IKSNGHLANALMNMYRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGS 567

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
              A +LF  M+     P   +F   L        +  G+QIH  + + G     V++ +
Sbjct: 568 YEAAYKLFLEMKKEGLEPDKITFASVLVGCKNPEALELGRQIHMLIIESGLQL-DVNLGN 626

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL +MY +C  ++ +  VF S   R++    +++      G  + A E+F  M ++G   
Sbjct: 627 ALINMYIRCGSLQDAYEVFHSLRHRNVMSWTAMIGGFADQGEDRKAFELFWQMQNDGFKP 686

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
            + T S+ LKA   SA  + G   + H   + SG+E +  V  +L+ AYS+ G +  + +
Sbjct: 687 VKSTFSSILKACMSSACLDEGKKVIAHI--LNSGYELDTGVGNALISAYSKSGSMTDARK 744

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VF+K+P+ +++ +  ++ GY++NG+G  AL     M ++G++ +K +F+ +L  C+    
Sbjct: 745 VFDKMPNRDIMSWNKMIAGYAQNGLGGTALQFAYQMQEQGVVLNKFSFVSILNACSSFSA 804

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           ++EG+ V   +     +  D +  + +I M  + G L++A+E+        + + W++++
Sbjct: 805 LEEGKRVHAEIVK-RKMQGDVRVGAALISMYAKCGSLEEAQEVFDNFT-EKNVVTWNAMI 862

Query: 594 RSCRVHG 600
            +   HG
Sbjct: 863 NAYAQHG 869



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 140/556 (25%), Positives = 295/556 (53%), Gaps = 16/556 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I+ SN  I+ +VK   ++ A ++F +MP RD++++N LIS   +    K+A  L++EM 
Sbjct: 116 DIFLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 175

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G   S  T+ S+L+ C +      G +IH +++  G+  +  + + L+++Y +     
Sbjct: 176 TAGFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDPRVQNSLLNMYGKCEDLP 235

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  +  R++ ++N ML  + + +  +E + ++ +M +EG+ P+ +++  ++   +
Sbjct: 236 SARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFT 295

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              +LDEGK++H   +  G ++ +I V  AL   +  CG +  AK++ +     DV+ +N
Sbjct: 296 TPSMLDEGKRIHKLAVNEG-LNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYN 354

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++  A +    +A E +++M+      +  +++  LN  S +  +  G+ IH +++++
Sbjct: 355 ALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV 414

Query: 343 GFDHGS-VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           G  H S V + ++L  MY +C  +  +  +F + P R L   N+++       +  +A++
Sbjct: 415 G--HSSDVQIGNSLISMYARCGDLPRARELFNTMPKRDLISWNAIIAGYARREDRGEAMK 472

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           ++  M  EG+    VT    L A + S++ + G  +++H   ++SG +SN  ++ +LM+ 
Sbjct: 473 LYKQMQSEGVKPGRVTFLHLLSACTNSSAYSDG--KMIHEDILRSGIKSNGHLANALMNM 530

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y RCG I  +  VFE   + +++ + S++ G++++G    A  +   M + GL PDK+TF
Sbjct: 531 YRRCGSIMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITF 590

Query: 522 LCVLAGCNHSGMVKEGQ----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
             VL GC +   ++ G+    L+  S     G+  D    + +I+M  R G L  A E+ 
Sbjct: 591 ASVLVGCKNPEALELGRQIHMLIIES-----GLQLDVNLGNALINMYIRCGSLQDAYEVF 645

Query: 578 QQTPGGGDCMMWSSLL 593
                  + M W++++
Sbjct: 646 HSLR-HRNVMSWTAMI 660



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 130/482 (26%), Positives = 239/482 (49%), Gaps = 4/482 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLL-DSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M S  + P   T   L   CT+    S   ++ +   +   + N + +N  ++ + + G 
Sbjct: 477 MQSEGVKPGRVTFLHLLSACTNSSAYSDGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 536

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ +F+   ARD++++N +I+G  +    + A  L+ EM   G++    TF+SVL  
Sbjct: 537 IMEAQNVFEGTRARDIISWNSMIAGHAQHGSYEAAYKLFLEMKKEGLEPDKITFASVLVG 596

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C N      G QIH  ++  G  L++ +G+ L+++Y+R G    A ++F  L  RN+ +W
Sbjct: 597 CKNPEALELGRQIHMLIIESGLQLDVNLGNALINMYIRCGSLQDAYEVFHSLRHRNVMSW 656

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+  F +     +   ++ +M+ +G +P   +F  +++ C     LDEGK++ +H++ 
Sbjct: 657 TAMIGGFADQGEDRKAFELFWQMQNDGFKPVKSTFSSILKACMSSACLDEGKKVIAHILN 716

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ +++  V NAL+  YS  GS+ +A+K FD +P  D++SWN +++ YA   L   AL+
Sbjct: 717 SGY-ELDTGVGNALISAYSKSGSMTDARKVFDKMPNRDIMSWNKMIAGYAQNGLGGTALQ 775

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
             ++MQ      +  SFV  LN  S    +  GK++H  + K     G V V +AL  MY
Sbjct: 776 FAYQMQEQGVVLNKFSFVSILNACSSFSALEEGKRVHAEIVKRKM-QGDVRVGAALISMY 834

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  +E +  VF++   +++   N+++ +    G    A++ F  M  EGI  D  T +
Sbjct: 835 AKCGSLEEAQEVFDNFTEKNVVTWNAMINAYAQHGLASKALDFFNCMDKEGIKPDGSTFT 894

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A + S     G+ R+      + G    I     L+    R G  + +  +  ++P
Sbjct: 895 SILSACNHSGLVMEGN-RIFSSLESQHGLSPTIEHYGCLVGLLGRAGRFQEAETLINQMP 953

Query: 480 SP 481
            P
Sbjct: 954 FP 955



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 113/491 (23%), Positives = 254/491 (51%), Gaps = 6/491 (1%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           + +  ++  C+      E  +IH +++  G G ++++ + L+++Y++      A  +F +
Sbjct: 83  AAYVDLVQNCTRKRSLAEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVSDAHQVFLK 142

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P R++ +WN ++  + +     +  +++ +M+  G  P+ +++  ++  C     L+ G
Sbjct: 143 MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTAGFIPSKITYISILTACCSPAELEYG 202

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++HS +I+ G+   +  V N+L++ Y  C  L  A++ F  I   DV+S+N+++ +YA 
Sbjct: 203 KKIHSKIIEAGY-QRDPRVQNSLLNMYGKCEDLPSARQVFSGIYRRDVVSYNTMLGLYAQ 261

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
              + + + LF +M      P   +++  L+  +    +  GK+IH      G +   + 
Sbjct: 262 KAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTTPSMLDEGKRIHKLAVNEGLN-SDIR 320

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL  M+ +C  +  +    E+   R +   N+L+ +L   G+ ++A E +  M  +G
Sbjct: 321 VGTALATMFVRCGDVAGAKQALEAFADRDVVVYNALIAALAQHGHYEEAFEQYYQMRSDG 380

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           + ++  T  + L A S S +  LG+  L+H    + G  S++ +  SL+  Y+RCG +  
Sbjct: 381 VVMNRTTYLSVLNACSTSKA--LGAGELIHSHISEVGHSSDVQIGNSLISMYARCGDLPR 438

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + ++F  +P  +++ + +I+ GY+R     EA+ + + M   G+ P +VTFL +L+ C +
Sbjct: 439 ARELFNTMPKRDLISWNAIIAGYARREDRGEAMKLYKQMQSEGVKPGRVTFLHLLSACTN 498

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           S    +G+++   +    GI ++    + +++M  R G + +A+ + + T    D + W+
Sbjct: 499 SSAYSDGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSIMEAQNVFEGTR-ARDIISWN 556

Query: 591 SLLRSCRVHGN 601
           S++     HG+
Sbjct: 557 SMIAGHAQHGS 567



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 114/406 (28%), Positives = 203/406 (50%), Gaps = 6/406 (1%)

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           E  R  E   + N  +    E N  ++  +V+ C+    L E K++H+ +++ G V  +I
Sbjct: 59  EQHRGSEREDLSNAYQPRPTETNRAAYVDLVQNCTRKRSLAEAKRIHAQMVEAG-VGPDI 117

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           F++N L++ Y  C S+ +A + F  +P  DVISWNS++S YA       A +LF  MQ  
Sbjct: 118 FLSNLLINMYVKCRSVSDAHQVFLKMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQTA 177

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              PS  +++  L        + +GK+IH  + + G+      VQ++L +MYGKC  + S
Sbjct: 178 GFIPSKITYISILTACCSPAELEYGKKIHSKIIEAGYQRDP-RVQNSLLNMYGKCEDLPS 236

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  VF     R +   N+++        +++ + +FG M  EGI  D+VT    L A + 
Sbjct: 237 ARQVFSGIYRRDVVSYNTMLGLYAQKAYVEECIGLFGQMSSEGIPPDKVTYINLLDAFTT 296

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
            +  + G  + +H  A+  G  S+I V  +L   + RCG +  + Q  E     +VV + 
Sbjct: 297 PSMLDEG--KRIHKLAVNEGLNSDIRVGTALATMFVRCGDVAGAKQALEAFADRDVVVYN 354

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           +++   +++G   EA +    M   G++ ++ T+L VL  C+ S  +  G+L+ + +  V
Sbjct: 355 ALIAALAQHGHYEEAFEQYYQMRSDGVVMNRTTYLSVLNACSTSKALGAGELIHSHISEV 414

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            G  +D Q  + +I M  R G L +A EL    P   D + W++++
Sbjct: 415 -GHSSDVQIGNSLISMYARCGDLPRARELFNTMP-KRDLISWNAII 458


>gi|359482115|ref|XP_003632713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 989

 Score =  347 bits (891), Expect = 9e-93,   Method: Compositional matrix adjust.
 Identities = 209/669 (31%), Positives = 360/669 (53%), Gaps = 8/669 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           M  + ++P     +++   CT I        L  +  +       +  N  +  + + G+
Sbjct: 204 MHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGN 263

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L +A+++F +M  RD ++YN LISG  +     +AL L+++M    +K    T +S+LS 
Sbjct: 264 LIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSA 323

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++ G   +G Q+H  V+ +G   +L I   L+DLY++      A + F      N+  W
Sbjct: 324 CASVGAGYKGKQLHSYVIKMGMSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLW 383

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N+ML A+ +L    E   ++ +M+ EG+ PN  ++  ++R C+    LD G+Q+H+ VIK
Sbjct: 384 NVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIK 443

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+   N++V + L+D Y+  G L  A+     +  +DV+SW ++++ Y  +DL  +AL+
Sbjct: 444 SGF-QFNVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALK 502

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  M+    R     F   ++  +    +  G+QIH      G+    + + +AL  +Y
Sbjct: 503 LFQEMENQGIRSDNIGFSSAISACAGIQALNQGQQIHAQSYISGYSE-DLSIGNALVSLY 561

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +C   + +   FE    +     N+L++    SG+ ++A+++F  M   G+   E  L 
Sbjct: 562 ARCGRAQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGV---EANLF 618

Query: 420 TTLKALSVSA-SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           T   A+S +A +AN+   + +H   IK+G++S    S  L+  YS+CG IE + + F ++
Sbjct: 619 TFGSAVSATANTANIKQGKQIHAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEM 678

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           P  NVV + +++ GYS++G G EA+ + E M Q GL+P+ VTF+ VL+ C+H G+V EG 
Sbjct: 679 PEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGVLSACSHVGLVNEGL 738

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F SM   +G+    +HY C++D+LGRA +L  A E +++ P   D M+W +LL +C V
Sbjct: 739 SYFRSMSKEHGLVPKPEHYVCVVDLLGRAALLCCAREFIEEMPIEPDAMIWRTLLSACTV 798

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H N  IG   A  L+ELEP D A Y  +SN Y+  G+++   + R+    R + ++ G S
Sbjct: 799 HKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKKEPGRS 858

Query: 659 LIEV-NSCH 666
            IEV NS H
Sbjct: 859 WIEVKNSIH 867



 Score =  235 bits (600), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 155/549 (28%), Positives = 285/549 (51%), Gaps = 11/549 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           +R ID ++  G +++A KLFD++P+ ++  +N +ISG    +   Q L L+  M++  + 
Sbjct: 49  SRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVT 108

Query: 108 ESASTFSSVLSVCS--NAGFY-TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
              STF+SVL  CS   A F  TE  QIH +++  GFG +  + +PL+DLY + G    A
Sbjct: 109 PDESTFASVLRACSGGKAPFQVTE--QIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLA 166

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F+ L  ++  +W  M+    +  R DE + ++ +M    V P    F  ++  C+  
Sbjct: 167 KLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKI 226

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            L   G+QLH  ++K G +    FV NALV  YS  G+LI A++ F  +   D IS+NS+
Sbjct: 227 ELFKLGEQLHGFIVKWG-LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSL 285

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S  A       AL+LF +MQL   +P   +    L+  +  G  Y GKQ+H YV K+G 
Sbjct: 286 ISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGM 345

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               + ++ +L D+Y KC  IE++   F +    ++   N ++ +    GN+ ++  +F 
Sbjct: 346 SSDLI-IEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFL 404

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  EG+  ++ T  + L+  +   + +LG    +H   IKSGF+ N+ V   L+D Y++
Sbjct: 405 QMQIEGLMPNQYTYPSILRTCTSLGALDLG--EQIHTQVIKSGFQFNVYVCSVLIDMYAK 462

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G ++ +  + +++   +VV +T+++ GY+++ +  EAL + + M  +G+  D + F   
Sbjct: 463 HGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSA 522

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           ++ C     + +GQ + ++   + G   D    + ++ +  R G    A    ++     
Sbjct: 523 ISACAGIQALNQGQQI-HAQSYISGYSEDLSIGNALVSLYARCGRAQDAYLAFEKID-AK 580

Query: 585 DCMMWSSLL 593
           D + W++L+
Sbjct: 581 DNISWNALI 589



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 130/553 (23%), Positives = 286/553 (51%), Gaps = 6/553 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K+GH++ AK +F+ +  +D V++  +ISG  +     +A+ L+ +M    + 
Sbjct: 151 NPLIDLYSKNGHVDLAKLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVI 210

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +   FSSVLS C+    +  G Q+H  ++  G     ++ + LV LY R G  + A  +
Sbjct: 211 PTPYVFSSVLSACTKIELFKLGEQLHGFIVKWGLSSETFVCNALVTLYSRWGNLIAAEQI 270

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++  R+  ++N ++    +    D  L+++ KM+ + ++P+ ++   ++  C+     
Sbjct: 271 FSKMHRRDRISYNSLISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAG 330

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +GKQLHS+VIK+G +  ++ +  +L+D Y  C  +  A + F     ++V+ WN ++  
Sbjct: 331 YKGKQLHSYVIKMG-MSSDLIIEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVA 389

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y     + ++  +F +MQ+    P+  ++   L   +  G +  G+QIH  V K GF   
Sbjct: 390 YGQLGNLSESYWIFLQMQIEGLMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQF- 448

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V+V S L DMY K   ++++  + +      +    +++          +A+++F  M 
Sbjct: 449 NVYVCSVLIDMYAKHGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEME 508

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           ++GI  D +  S+ + A +   + N G  + +H  +  SG+  ++++  +L+  Y+RCG 
Sbjct: 509 NQGIRSDNIGFSSAISACAGIQALNQG--QQIHAQSYISGYSEDLSIGNALVSLYARCGR 566

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
            + ++  FEKI + + + + ++++G++++G   EAL +   M Q G+  +  TF   ++ 
Sbjct: 567 AQDAYLAFEKIDAKDNISWNALISGFAQSGHCEEALQVFSQMNQAGVEANLFTFGSAVSA 626

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
             ++  +K+G+ + ++M    G D++ +  + +I +  + G ++ A+    + P   + +
Sbjct: 627 TANTANIKQGKQI-HAMMIKTGYDSETEASNVLITLYSKCGSIEDAKREFFEMP-EKNVV 684

Query: 588 MWSSLLRSCRVHG 600
            W++++     HG
Sbjct: 685 SWNAMITGYSQHG 697



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 242/503 (48%), Gaps = 13/503 (2%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   GI+ +  T+  +   C N+G   +  ++H R+   GF     +GS L+D+Y+  G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A+ LFD++P  N++ WN ++          +VL +++ M  E V P+  +F  ++R 
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 221 CSIGML-LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           CS G       +Q+H+ +I  G+   +  V N L+D YS  G +  AK  F+ + + D +
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGF-GSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +++S  +      +A+ LF +M      P+   F   L+  ++      G+Q+HG++
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G       V +AL  +Y +   + ++  +F     R     NSL++ L   G    A
Sbjct: 240 VKWGLS-SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +++F  M  + +  D VT+++ L A +   +   G  + LH   IK G  S++ +  SL+
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKG--KQLHSYVIKMGMSSDLIIEGSLL 356

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +C  IE +H+ F    + NVV +  ++  Y + G   E+  +   M   GL+P++ 
Sbjct: 357 DLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQY 416

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSC--MIDMLGRAGILDKAEEL 576
           T+  +L  C   G +  G+ +    +KS +  +     Y C  +IDM  + G LD A  +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV----YVCSVLIDMYAKHGELDTARGI 472

Query: 577 LQQTPGGGDCMMWSSLLRSCRVH 599
           LQ+     D + W++++     H
Sbjct: 473 LQRLR-EEDVVSWTAMIAGYTQH 494


>gi|297798510|ref|XP_002867139.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
 gi|297312975|gb|EFH43398.1| EMB2758 [Arabidopsis lyrata subsp. lyrata]
          Length = 824

 Score =  347 bits (890), Expect = 1e-92,   Method: Compositional matrix adjust.
 Identities = 199/658 (30%), Positives = 355/658 (53%), Gaps = 15/658 (2%)

Query: 10  VRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDE 69
           +  + TL   CT++   S+  L       N   N+  S + ++ +   G++  A+  FD 
Sbjct: 54  IDDVHTLFRYCTNL--QSAKCLHARLVVSNAIQNVCISAKLVNLYCYLGNVALARYTFDH 111

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDE-MVSHGIKESASTFSSVLSVCSNAGFYTE 128
           +  RD+  +NL+ISG G+  +  + +  +   M+S G++    TF SVL  C N    T+
Sbjct: 112 IHNRDVYAWNLMISGYGRAGYSSEVIRCFSLFMLSSGLQPDYRTFPSVLKACRNV---TD 168

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G +IHC  L  GF  ++Y+ + L+ LY R G  V A  LFDE+P R++ +WN M+  +C+
Sbjct: 169 GNKIHCLALKFGFMWDVYVAASLIHLYCRYGAVVNARILFDEMPTRDMGSWNAMISGYCQ 228

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
                E L + + ++A     + ++   ++  C+     + G  +HS+ IK G ++  +F
Sbjct: 229 SGNAKEALTLSDGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG-LESELF 283

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V+N L+D Y+  GSL + +K FD + V D+ISWNSI+  Y   +    A+ LF  M+L R
Sbjct: 284 VSNKLIDLYAEFGSLKDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAILLFQEMRLSR 343

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P   + +   +  S+ G +   + + G+  + G+    + + +A+  MY K  +++S+
Sbjct: 344 IQPDCLTLISLASILSQLGEIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSA 403

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG--IGLDEVTLSTTLKALS 426
            AVF   P + +   N++++    +G   +A+EM+  M +EG  I  ++ T  + L A S
Sbjct: 404 RAVFNWLPNKDVISWNTIISGYAQNGFASEAIEMYNIMEEEGGEISANQGTWVSVLPACS 463

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            + +   G    LH   +K+G   ++ V  SL D Y +CG ++ +  +F +IP  N V +
Sbjct: 464 QAGALRQG--MKLHGRLLKNGLYLDVFVGTSLADMYGKCGRLDDALSLFYQIPRVNSVPW 521

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++  +  +G G +A+ + + M+  G+ PD +TF+ +L+ C+HSG+V EG+  F  M++
Sbjct: 522 NTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGEWCFEMMQT 581

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            YGI    +HY CM+D+ GRAG L+ A   ++  P   D  +W +LL +CRVHGN  +G+
Sbjct: 582 DYGITPSLKHYGCMVDLYGRAGQLEIALNFIKSMPLQPDASIWGALLSACRVHGNVDLGK 641

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             +  L E+EP     +  +SN Y+  G++E   +IR     + L +  G S +EV++
Sbjct: 642 IASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSITSGKGLRKTPGWSSMEVDN 699


>gi|359489080|ref|XP_002264194.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Vitis vinifera]
          Length = 889

 Score =  347 bits (889), Expect = 2e-92,   Method: Compositional matrix adjust.
 Identities = 189/622 (30%), Positives = 353/622 (56%), Gaps = 6/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  N  ID + +   L+ A+K+F+EMP RD+V++N LISG     +  +AL +Y    
Sbjct: 149 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 208

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G+   + T SSVL  C   G   EG  IH  +  +G   ++ + + L+ +Y +    +
Sbjct: 209 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLI 268

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               +FD++  R+  +WN M+  + ++   +E ++++ +M  +  +P+ L+   +++ C 
Sbjct: 269 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACG 327

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ GK +H ++I  G+ + +   +N L++ Y+ CG+L+ +++ F  +   D +SWN
Sbjct: 328 HLGDLEFGKYVHDYMITSGY-ECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 386

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S++++Y       +A++LF +M     +P   ++V  L+ +++ G+++ GK++H  + K+
Sbjct: 387 SMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLHLGKELHCDLAKM 445

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF+   V V + L DMY KC  +  S+ VFE+   R +   N+++ S +HS +    + M
Sbjct: 446 GFNSNIV-VSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRM 504

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
              M  EG+  D  T+ + L   S+ A+   G  + +H C  K G ES++ V   L++ Y
Sbjct: 505 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQG--KEIHGCIFKLGLESDVPVGNVLIEMY 562

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           S+CG +  S QVF+ + + +VV +T++++     G G++A+     M   G++PD V F+
Sbjct: 563 SKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFV 622

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            ++  C+HSG+V+EG   F+ MK  Y I+   +HY+C++D+L R+ +LDKAE+ +   P 
Sbjct: 623 AIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPL 682

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +CR+ G+  I  RV+  ++EL P D   Y  VSN Y+ +G+++    I
Sbjct: 683 KPDSSIWGALLSACRMSGDTEIAERVSERIIELNPDDTGYYVLVSNIYAALGKWDQVRSI 742

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R++  AR L +D G S +E+ +
Sbjct: 743 RKSIKARGLKKDPGCSWMEIQN 764



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/549 (26%), Positives = 276/549 (50%), Gaps = 17/549 (3%)

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P+ ++  +N +I          +AL LY E     ++    TF SV++ C+    +    
Sbjct: 76  PSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 135

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            IH RVL +GFG +LYIG+ L+D+Y R     +A  +F+E+P R++ +WN ++  +    
Sbjct: 136 SIHDRVLDMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 195

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             +E L +Y + +  GV P+  +   ++R C     ++EG  +H  + K+G +  ++ V 
Sbjct: 196 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG-IKKDVIVN 254

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           N L+  Y     LI+ ++ FD + + D +SWN+++  Y+   L  ++++LF  M + + +
Sbjct: 255 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFK 313

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P + +    L      G++ FGK +H Y+   G++  +    + L +MY KC  + +S  
Sbjct: 314 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT-ASNILINMYAKCGNLLASQE 372

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF     +     NS++   + +G+  +A+++F  M  + +  D VT    L     S S
Sbjct: 373 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLL-----SMS 426

Query: 431 ANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             LG   L   LHC   K GF SNI VS +L+D Y++CG +  S +VFE + + +++ + 
Sbjct: 427 TQLGDLHLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 486

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           +I+     +      L M+  M   G+ PD  T L +L  C+     ++G+ +   +  +
Sbjct: 487 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 546

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
            G+++D    + +I+M  + G L  + ++ +      D + W++L+ +C ++G    G++
Sbjct: 547 -GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TKDVVTWTALISACGMYGE---GKK 601

Query: 608 VANILMELE 616
                 E+E
Sbjct: 602 AVRAFGEME 610



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 117/493 (23%), Positives = 245/493 (49%), Gaps = 10/493 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD- 169
           + FSS+    ++A   T+  ++H  +++LG   ++   + L+  Y        +  +F  
Sbjct: 14  TLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAHFRDPTSSFSVFRL 73

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
             P  N+  WN ++RA        E L +Y++ +   ++P+  +F  ++  C+  +  + 
Sbjct: 74  ASPSNNVYLWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEM 133

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            K +H  V+ +G+   ++++ NAL+D Y     L +A+K F+ +P+ DV+SWNS++S Y 
Sbjct: 134 AKSIHDRVLDMGF-GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYN 192

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                 +ALE+++R +     P   +    L      G+V  G  IHG + K+G     V
Sbjct: 193 ANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKK-DV 251

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V + L  MY K N +     +F+    R     N+++      G  ++++++F  MV++
Sbjct: 252 IVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ 311

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
               D +T+++ L+A         G  + +H   I SG+E +   S  L++ Y++CG++ 
Sbjct: 312 -FKPDLLTITSILQACGHLGDLEFG--KYVHDYMITSGYECDTTASNILINMYAKCGNLL 368

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            S +VF  +   + V + S++N Y +NG   EA+ + + M++  + PD VT++ +L+   
Sbjct: 369 ASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKPDSVTYVMLLSMST 427

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
             G +  G+ +   +  + G +++    + ++DM  + G +  + ++ +      D + W
Sbjct: 428 QLGDLHLGKELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMK-ARDIITW 485

Query: 590 SSLLRSCRVHGNE 602
           ++++ SC VH  +
Sbjct: 486 NTIIASC-VHSED 497


>gi|147845321|emb|CAN83351.1| hypothetical protein VITISV_028907 [Vitis vinifera]
          Length = 948

 Score =  345 bits (886), Expect = 3e-92,   Method: Compositional matrix adjust.
 Identities = 189/622 (30%), Positives = 353/622 (56%), Gaps = 6/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  N  ID + +   L+ A+K+F+EMP RD+V++N LISG     +  +AL +Y    
Sbjct: 208 DLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANGYWNEALEIYYRFR 267

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G+   + T SSVL  C   G   EG  IH  +  +G   ++ + + L+ +Y +    +
Sbjct: 268 NLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIGIKKDVIVNNGLLSMYCKFNGLI 327

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               +FD++  R+  +WN M+  + ++   +E ++++ +M  +  +P+ L+   +++ C 
Sbjct: 328 DGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEMVNQ-FKPDLLTITSILQACG 386

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ GK +H ++I  G+ + +   +N L++ Y+ CG+L+ +++ F  +   D +SWN
Sbjct: 387 HLGDLEFGKYVHDYMITSGY-ECDTTASNILINMYAKCGNLLASQEVFSGMKCKDSVSWN 445

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S++++Y       +A++LF +M     +P   ++V  L+ +++ G++  GK++H  + K+
Sbjct: 446 SMINVYIQNGSFDEAMKLF-KMMKTDVKPDSVTYVMLLSMSTQLGDLXLGKELHCDLAKM 504

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF+   V V + L DMY KC  +  S+ VFE+   R +   N+++ S +HS +    + M
Sbjct: 505 GFNSNIV-VSNTLVDMYAKCGEMGDSLKVFENMKARDIITWNTIIASCVHSEDCNLGLRM 563

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
              M  EG+  D  T+ + L   S+ A+   G  + +H C  K G ES++ V   L++ Y
Sbjct: 564 ISRMRTEGVTPDMATMLSILPVCSLLAAKRQG--KEIHGCIFKLGLESDVPVGNVLIEMY 621

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           S+CG +  S QVF+ + + +VV +T++++     G G++A+     M   G++PD V F+
Sbjct: 622 SKCGSLRNSFQVFKLMKTKDVVTWTALISACGMYGEGKKAVRAFGEMEAAGIVPDHVAFV 681

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            ++  C+HSG+V+EG   F+ MK  Y I+   +HY+C++D+L R+ +LDKAE+ +   P 
Sbjct: 682 AIIFACSHSGLVEEGLNYFHRMKKDYKIEPRIEHYACVVDLLSRSALLDKAEDFILSMPL 741

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +CR+ G+  I +RV+  ++EL P D   Y  VSN Y+ +G+++    I
Sbjct: 742 KPDSSIWGALLSACRMSGDTEIAQRVSERIIELNPDDTGYYVLVSNVYAALGKWDQVRSI 801

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R++  AR L +D G S +E+ +
Sbjct: 802 RKSIKARGLKKDPGCSWMEIQN 823



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 144/549 (26%), Positives = 276/549 (50%), Gaps = 17/549 (3%)

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P+ ++  +N +I          +AL LY E     ++    TF SV++ C+    +    
Sbjct: 135 PSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPSVINACAGLLDFEMAK 194

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            IH RVL +GFG +LYIG+ L+D+Y R     +A  +F+E+P R++ +WN ++  +    
Sbjct: 195 SIHDRVLXMGFGSDLYIGNALIDMYCRFNDLDKARKVFEEMPLRDVVSWNSLISGYNANG 254

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             +E L +Y + +  GV P+  +   ++R C     ++EG  +H  + K+G +  ++ V 
Sbjct: 255 YWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIHGLIEKIG-IKKDVIVN 313

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           N L+  Y     LI+ ++ FD + + D +SWN+++  Y+   L  ++++LF  M + + +
Sbjct: 314 NGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLYEESIKLFMEM-VNQFK 372

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P + +    L      G++ FGK +H Y+   G++  +    + L +MY KC  + +S  
Sbjct: 373 PDLLTITSILQACGHLGDLEFGKYVHDYMITSGYECDTT-ASNILINMYAKCGNLLASQE 431

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF     +     NS++   + +G+  +A+++F  M  + +  D VT    L     S S
Sbjct: 432 VFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFKMMKTD-VKPDSVTYVMLL-----SMS 485

Query: 431 ANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             LG   L   LHC   K GF SNI VS +L+D Y++CG +  S +VFE + + +++ + 
Sbjct: 486 TQLGDLXLGKELHCDLAKMGFNSNIVVSNTLVDMYAKCGEMGDSLKVFENMKARDIITWN 545

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           +I+     +      L M+  M   G+ PD  T L +L  C+     ++G+ +   +  +
Sbjct: 546 TIIASCVHSEDCNLGLRMISRMRTEGVTPDMATMLSILPVCSLLAAKRQGKEIHGCIFKL 605

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
            G+++D    + +I+M  + G L  + ++ +      D + W++L+ +C ++G    G++
Sbjct: 606 -GLESDVPVGNVLIEMYSKCGSLRNSFQVFKLMK-TKDVVTWTALISACGMYGE---GKK 660

Query: 608 VANILMELE 616
                 E+E
Sbjct: 661 AVRAFGEME 669



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 126/566 (22%), Positives = 275/566 (48%), Gaps = 21/566 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF-RHPKQALYLYDEMVSHG 105
           +N+TI   +++   +++ + +D +  +++      +   G +  H ++  Y   ++ S  
Sbjct: 2   ANKTIGGCIRTPCPDASCRYYDWI--KNLYELKSRVHSSGNYVDHQRREFYTSTKLFSRV 59

Query: 106 IK--------ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           +K           + FSS+    ++A   T+  ++H  +++LG   ++   + L+  Y  
Sbjct: 60  MKTLRVLHECSRQTLFSSISRALASAATTTQLHKLHSLIITLGLHHSVIFSAKLIAKYAH 119

Query: 158 MGPSVRALDLFD-ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
                 +  +F    P  N+  WN ++RA        E L +Y++ +   ++P+  +F  
Sbjct: 120 FRDPTSSFSVFRLASPSNNVYXWNSIIRALTHNGLFSEALSLYSETQRIRLQPDTYTFPS 179

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++  C+  +  +  K +H  V+ +G+   ++++ NAL+D Y     L +A+K F+ +P+ 
Sbjct: 180 VINACAGLLDFEMAKSIHDRVLXMGF-GSDLYIGNALIDMYCRFNDLDKARKVFEEMPLR 238

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWNS++S Y       +ALE+++R +     P   +    L      G+V  G  IH
Sbjct: 239 DVVSWNSLISGYNANGYWNEALEIYYRFRNLGVVPDSYTMSSVLRACGGLGSVEEGDIIH 298

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G + K+G     V V + L  MY K N +     +F+    R     N+++      G  
Sbjct: 299 GLIEKIGIKK-DVIVNNGLLSMYCKFNGLIDGRRIFDKMVLRDAVSWNTMICGYSQVGLY 357

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++++++F  MV++    D +T+++ L+A         G  + +H   I SG+E +   S 
Sbjct: 358 EESIKLFMEMVNQ-FKPDLLTITSILQACGHLGDLEFG--KYVHDYMITSGYECDTTASN 414

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
            L++ Y++CG++  S +VF  +   + V + S++N Y +NG   EA+ + + M++  + P
Sbjct: 415 ILINMYAKCGNLLASQEVFSGMKCKDSVSWNSMINVYIQNGSFDEAMKLFK-MMKTDVKP 473

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D VT++ +L+     G +  G+ +   +  + G +++    + ++DM  + G +  + ++
Sbjct: 474 DSVTYVMLLSMSTQLGDLXLGKELHCDLAKM-GFNSNIVVSNTLVDMYAKCGEMGDSLKV 532

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNE 602
            +      D + W++++ SC VH  +
Sbjct: 533 FENMK-ARDIITWNTIIASC-VHSED 556


>gi|168044807|ref|XP_001774871.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673765|gb|EDQ60283.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 902

 Score =  345 bits (886), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 198/663 (29%), Positives = 349/663 (52%), Gaps = 5/663 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M    L P   TI +   +C S   L     +     Q     ++  +N  ++ + K G 
Sbjct: 117 MQQHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGS 176

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+++FD+M  + +V++ + I G       + A  ++ +M   G+  +  T+ SVL+ 
Sbjct: 177 IEEAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNA 236

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            S+      G  +H R+L+ G   +  +G+ LV +Y + G       +F++L  R+L  W
Sbjct: 237 FSSPAALKWGKAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAW 296

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+    E    +E   +YN+M+ EGV PN +++  ++  C     L  GK++HS V K
Sbjct: 297 NTMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAK 356

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+   +I V NAL+  YS CGS+ +A+  FD +   DVISW +++   A      +AL 
Sbjct: 357 AGFTS-DIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALT 415

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           ++  MQ     P+  ++   LN  S    + +G++IH  V + G      HV + L +MY
Sbjct: 416 VYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLA-TDAHVGNTLVNMY 474

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
             C  ++ +  VF+    R +   N+++         K+A+++F  + +EG+  D+VT  
Sbjct: 475 SMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYI 534

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A + S S  L   R +H    K GF S+ +V  +L+  Y++CG    +  VFEK+ 
Sbjct: 535 NMLNACANSGS--LEWAREIHTLVRKGGFFSDTSVGNALVSTYAKCGSFSDASIVFEKMT 592

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             NV+ + +I+ G +++G G++AL + E M   G+ PD VTF+ +L+ C+H+G+++EG+ 
Sbjct: 593 KRNVISWNAIIGGSAQHGRGQDALQLFERMKMEGVKPDIVTFVSLLSACSHAGLLEEGRR 652

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F SM   + I    +HY CM+D+LGRAG LD+AE L++  P   +  +W +LL +CR+H
Sbjct: 653 YFCSMSQDFAIIPTIEHYGCMVDLLGRAGQLDEAEALIKTMPFQANTRIWGALLGACRIH 712

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
           GN  +  R A   ++L+  +  VY  +S+ Y+  G ++ + ++R+    R +T++ G S 
Sbjct: 713 GNVPVAERAAESSLKLDLDNAVVYVALSHMYAAAGMWDSAAKLRKLMEQRGVTKEPGRSW 772

Query: 660 IEV 662
           I+V
Sbjct: 773 IQV 775



 Score =  238 bits (607), Expect = 7e-60,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 270/490 (55%), Gaps = 6/490 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           Y+ N  I+ +++ G +  A++++ ++    R + ++N ++ G  ++ + ++AL L  +M 
Sbjct: 59  YTVNALINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQ 118

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            HG+    +T  S LS C + G    G +IH + +  G   ++ + + ++++Y + G   
Sbjct: 119 QHGLAPDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFDVKVANCILNMYAKCGSIE 178

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A ++FD++ ++++ +W + +  + +  R +    ++ KM+ EGV PN +++  ++   S
Sbjct: 179 EAREVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFS 238

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  GK +HS ++  G  + +  V  ALV  Y+ CGS  + ++ F+ +   D+I+WN
Sbjct: 239 SPAALKWGKAVHSRILNAG-HESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWN 297

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++   A+     +A E++ +MQ     P+  ++V  LN    +  +++GK+IH  V K 
Sbjct: 298 TMIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKA 357

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF    + VQ+AL  MY +C  I+ +  VF+    + +    +++  L  SG   +A+ +
Sbjct: 358 GFT-SDIGVQNALISMYSRCGSIKDARLVFDKMVRKDVISWTAMIGGLAKSGFGAEALTV 416

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           +  M   G+  + VT ++ L A S  A+   G  R +H   +++G  ++  V  +L++ Y
Sbjct: 417 YQEMQQAGVEPNRVTYTSILNACSSPAALEWG--RRIHQQVVEAGLATDAHVGNTLVNMY 474

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           S CG ++ + QVF+++   ++V + +++ GY+ + +G+EAL + + + + GL PDKVT++
Sbjct: 475 SMCGSVKDARQVFDRMIQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKVTYI 534

Query: 523 CVLAGCNHSG 532
            +L  C +SG
Sbjct: 535 NMLNACANSG 544



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 127/506 (25%), Positives = 235/506 (46%), Gaps = 58/506 (11%)

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           D  + +   ++ +G + N   +  M++ C     L  G+Q+H H+I+   V  + +  NA
Sbjct: 5   DGAVDVVQYLQQQGAQVNSSDYMKMLKRCIEVKDLVAGRQVHQHIIQHRTVP-DQYTVNA 63

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           L++ Y  CGS+ EA++ +  +   +  V SWN++V  Y  Y  I  AL+L  +MQ     
Sbjct: 64  LINMYIQCGSIEEARQVWKKLSYMERTVHSWNAMVVGYIQYGYIEKALKLLRQMQQHGLA 123

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG--FDHGSVHVQSALTDMYGKCNVIESS 368
           P   + + FL+     G + +G++IH    + G  FD   V V + + +MY KC  IE +
Sbjct: 124 PDRTTIMSFLSSCKSPGALEWGREIHFQAMQAGLLFD---VKVANCILNMYAKCGSIEEA 180

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VF+    +S+      +      G  + A E+F  M  EG+  + +T  + L A S  
Sbjct: 181 REVFDKMEKKSVVSWTITIGGYADCGRSETAFEIFQKMEQEGVVPNRITYISVLNAFSSP 240

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           A+   G  + +H   + +G ES+ AV  +L+  Y++CG  +   QVFEK+ + +++ + +
Sbjct: 241 AALKWG--KAVHSRILNAGHESDTAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLIAWNT 298

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS----------------- 531
           ++ G +  G   EA ++   M + G++P+K+T++ +L  C +S                 
Sbjct: 299 MIGGLAEGGYWEEASEVYNQMQREGVMPNKITYVILLNACVNSAALHWGKEIHSRVAKAG 358

Query: 532 ------------------GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
                             G +K+ +LVF+ M     +  D   ++ MI  L ++G   +A
Sbjct: 359 FTSDIGVQNALISMYSRCGSIKDARLVFDKM-----VRKDVISWTAMIGGLAKSGFGAEA 413

Query: 574 EELLQQTPGGG---DCMMWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFAVYSQVSNF 629
             + Q+    G   + + ++S+L +C        GRR+   ++E     D  V + + N 
Sbjct: 414 LTVYQEMQQAGVEPNRVTYTSILNACSSPAALEWGRRIHQQVVEAGLATDAHVGNTLVNM 473

Query: 630 YSEIGEFEVSMQIRETALARKLTRDI 655
           YS  G  + + Q+      R + RDI
Sbjct: 474 YSMCGSVKDARQV----FDRMIQRDI 495


>gi|255586261|ref|XP_002533783.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526284|gb|EEF28596.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 672

 Score =  344 bits (883), Expect = 8e-92,   Method: Compositional matrix adjust.
 Identities = 190/613 (30%), Positives = 340/613 (55%), Gaps = 10/613 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + ++G +  A++LFD+MP +D V +N++++G  K   P  A+ ++++M +   K ++ TF
Sbjct: 17  YAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKVFEDMRNCQTKPNSITF 76

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +SVLS+C++      G Q+H  V+S GF  +  + + LV +Y + G    AL LF+ +P+
Sbjct: 77  ASVLSICASEALSEFGNQLHGLVISCGFHFDPLVANALVAMYSKFGQLSDALKLFNTMPD 136

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            N+ TWN M+  F +    DE   ++++M + GV P+ ++F   +   +    L +GK++
Sbjct: 137 TNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFASFLPSVTESASLKQGKEI 196

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H ++++ G + +++F+ +AL+D Y  C  +  A K F      D++   +I+S Y    L
Sbjct: 197 HGYILRHG-IALDVFLKSALIDIYFKCRDVGMACKIFKQSTNVDIVVCTAIISGYVLNGL 255

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             DALE+F  +   +  P+  +    L   +    +  GK++H  + K G D    HV S
Sbjct: 256 NNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDE-RRHVGS 314

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           A+ DMY KC  ++ +  +F   P +   C N+++T+   +G  ++A+++F  M  EG+  
Sbjct: 315 AIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSY 374

Query: 414 DEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           D V++S  L     SA ANL +    + +H   IK  F+S +    +L+D Y +CG++ +
Sbjct: 375 DCVSISAAL-----SACANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSV 429

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +  VF+ +   N V + SI+  Y  +G    +L +   M++ G+ PD VTFL +L+ C H
Sbjct: 430 ARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGH 489

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +G V +G   F  M   YGI A  +HY+C++D+ GRAG L++A E ++  P   D  +W 
Sbjct: 490 AGQVDKGIQYFRCMTEEYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGVWG 549

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           +LL +CRVHGN  +    +  L++L+P +   Y  +SN +++ G++    +IR     R 
Sbjct: 550 TLLGACRVHGNVELAEVASRCLLDLDPENSGCYVLLSNVHADAGQWGSVRKIRSLMKKRG 609

Query: 651 LTRDIGHSLIEVN 663
           + +  G+S IEVN
Sbjct: 610 VQKVPGYSWIEVN 622



 Score =  228 bits (580), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 135/464 (29%), Positives = 252/464 (54%), Gaps = 8/464 (1%)

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
           +GF ++ ++GS L+ LY   G    A  LFD++P ++   WN+ML  F +   P+  +++
Sbjct: 1   MGFNVDEFVGSSLIKLYAENGCIEDARRLFDKMPNKDCVLWNVMLNGFVKCGEPNSAVKV 60

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           +  M+    +PN ++F  ++  C+   L + G QLH  VI  G+   +  VANALV  YS
Sbjct: 61  FEDMRNCQTKPNSITFASVLSICASEALSEFGNQLHGLVISCGF-HFDPLVANALVAMYS 119

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
             G L +A K F+ +P  +V++WN +++ +     + +A  LF  M      P   +F  
Sbjct: 120 KFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGVSPDSITFAS 179

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
           FL   + + ++  GK+IHGY+ + G     V ++SAL D+Y KC  +  +  +F+ +   
Sbjct: 180 FLPSVTESASLKQGKEIHGYILRHGIAL-DVFLKSALIDIYFKCRDVGMACKIFKQSTNV 238

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
            +  C ++++  + +G   DA+E+F ++++E +  + VTL++ L A +  A+ NLG  + 
Sbjct: 239 DIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLATLNLG--KE 296

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           LH   +K G +    V  ++MD Y++CG ++L++Q+F ++P  + VC+ +I+   S+NG 
Sbjct: 297 LHANILKHGLDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIITNCSQNGK 356

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQHY 557
            +EA+D+   M + GL  D V+    L+ C +   +  G+ + + M K  +  D++    
Sbjct: 357 PQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAF--DSEVFAE 414

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           S +IDM G+ G L  A  +        + + W+S++ +   HG+
Sbjct: 415 SALIDMYGKCGNLSVARCVFDMMREKNE-VSWNSIIAAYGSHGH 457



 Score =  167 bits (423), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 111/437 (25%), Positives = 219/437 (50%), Gaps = 4/437 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  +  + K G L+ A KLF+ MP  ++VT+N +I+G  +     +A  L+ EM+S G+
Sbjct: 111 ANALVAMYSKFGQLSDALKLFNTMPDTNVVTWNGMIAGFVQNGFMDEASLLFSEMISAGV 170

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
              + TF+S L   + +    +G +IH  +L  G  L++++ S L+D+Y +      A  
Sbjct: 171 SPDSITFASFLPSVTESASLKQGKEIHGYILRHGIALDVFLKSALIDIYFKCRDVGMACK 230

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F +    ++     ++  +      ++ L ++  +  E + PN ++   ++  C+    
Sbjct: 231 IFKQSTNVDIVVCTAIISGYVLNGLNNDALEIFRWLLEEKMSPNAVTLASVLPACAGLAT 290

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L+ GK+LH++++K G +D    V +A++D Y+ CG L  A + F  +P  D + WN+I++
Sbjct: 291 LNLGKELHANILKHG-LDERRHVGSAIMDMYAKCGRLDLAYQIFRRMPEKDAVCWNAIIT 349

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
             +      +A++LF +M          S    L+  +    ++ GK IH ++ K  FD 
Sbjct: 350 NCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSACANLPALHHGKAIHSFMIKGAFD- 408

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V  +SAL DMYGKC  +  +  VF+    ++    NS++ +    G+++ ++ +F  M
Sbjct: 409 SEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSWNSIIAAYGSHGHLEVSLALFHKM 468

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           +++GI  D VT  T L A   +   + G  +   C   + G  + +     ++D + R G
Sbjct: 469 LEDGIQPDHVTFLTILSACGHAGQVDKG-IQYFRCMTEEYGIPARMEHYACIVDLFGRAG 527

Query: 467 HIELSHQVFEKIP-SPN 482
            +  + +  + +P SP+
Sbjct: 528 RLNEAFETIKNMPFSPD 544



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 70/289 (24%), Positives = 138/289 (47%), Gaps = 6/289 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           +L  K+ P   T+ ++ P C  +  L+    L  +  +       +  +  +D + K G 
Sbjct: 266 LLEEKMSPNAVTLASVLPACAGLATLNLGKELHANILKHGLDERRHVGSAIMDMYAKCGR 325

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A ++F  MP +D V +N +I+ C +   P++A+ L+ +M   G+     + S+ LS 
Sbjct: 326 LDLAYQIFRRMPEKDAVCWNAIITNCSQNGKPQEAIDLFRQMGREGLSYDCVSISAALSA 385

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+N      G  IH  ++   F   ++  S L+D+Y + G    A  +FD + E+N  +W
Sbjct: 386 CANLPALHHGKAIHSFMIKGAFDSEVFAESALIDMYGKCGNLSVARCVFDMMREKNEVSW 445

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++ A+      +  L +++KM  +G++P+ ++F  ++  C     +D+G Q    + +
Sbjct: 446 NSIIAAYGSHGHLEVSLALFHKMLEDGIQPDHVTFLTILSACGHAGQVDKGIQYFRCMTE 505

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEA---KKSFDFIPVDDVISWNSIV 285
              +   +     +VD +   G L EA    K+  F P D V  W +++
Sbjct: 506 EYGIPARMEHYACIVDLFGRAGRLNEAFETIKNMPFSPDDGV--WGTLL 552


>gi|148909481|gb|ABR17838.1| unknown [Picea sitchensis]
          Length = 795

 Score =  344 bits (882), Expect = 1e-91,   Method: Compositional matrix adjust.
 Identities = 180/590 (30%), Positives = 329/590 (55%), Gaps = 4/590 (0%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           + V +   I G  K     +AL LY +M   GI      F SV+  C +      G ++H
Sbjct: 84  NAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKVH 143

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
             +++ GF  ++ +G+ L  +Y + G    A  +FD +P+R++ +WN ++  + +  +P 
Sbjct: 144 EDIIARGFESDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPY 203

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           E L ++++M+  G++PN  +   ++  C+  + L++GKQ+H + I+ G ++ ++ V N L
Sbjct: 204 EALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSG-IESDVLVVNGL 262

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           V+ Y+ CG++  A K F+ +P+ DV SWN+I+  Y+      +AL  F RMQ+   +P+ 
Sbjct: 263 VNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNS 322

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            + V  L   +    +  G+QIHGY  + GF+   V V +AL +MY KC  + S+  +FE
Sbjct: 323 ITMVSVLPACAHLFALEQGQQIHGYAIRSGFESNDV-VGNALVNMYAKCGNVNSAYKLFE 381

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
             P +++   N++++     G+  +A+ +F  M  +GI  D   + + L A +   +   
Sbjct: 382 RMPKKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQ 441

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G  + +H   I+SGFESN+ V   L+D Y++CG++  + ++FE++P  +VV +T+++  Y
Sbjct: 442 G--KQIHGYTIRSGFESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAY 499

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
             +G G +AL +   M + G   D + F  +L  C+H+G+V +G   F  MKS YG+   
Sbjct: 500 GIHGHGEDALALFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQYFQCMKSDYGLAPK 559

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
            +HY+C++D+LGRAG LD+A  +++      D  +W +LL +CR+H N  +G + A  L 
Sbjct: 560 LEHYACLVDLLGRAGHLDEANGIIKNMSLEPDANVWGALLGACRIHCNIELGEQAAKHLF 619

Query: 614 ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           EL+P +   Y  +SN Y+E   +E   ++R+    + + +  G S++ V+
Sbjct: 620 ELDPDNAGYYVLLSNIYAEAQRWEDVAKLRKMMKEKGVKKQPGCSVVAVH 669



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 131/433 (30%), Positives = 238/433 (54%), Gaps = 6/433 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G L +A+++FD MP RD+V++N +I+G  +   P +AL L+ EM  +GIK ++ST 
Sbjct: 165 YTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQPYEALALFSEMQVNGIKPNSSTL 224

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            SV+ VC++     +G QIHC  +  G   ++ + + LV++Y + G    A  LF+ +P 
Sbjct: 225 VSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGNVNTAHKLFERMPI 284

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++A+WN ++  +   S+  E L  +N+M+  G++PN ++   ++  C+    L++G+Q+
Sbjct: 285 RDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPACAHLFALEQGQQI 344

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H + I+ G+ + N  V NALV+ Y+ CG++  A K F+ +P  +V++WN+I+S Y+ +  
Sbjct: 345 HGYAIRSGF-ESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAWNAIISGYSQHGH 403

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +AL LF  MQ    +P   + V  L   +    +  GKQIHGY  + GF+  +V V +
Sbjct: 404 PHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIRSGFE-SNVVVGT 462

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
            L D+Y KC  + ++  +FE  P + +    +++ +    G+ +DA+ +F  M + G  L
Sbjct: 463 GLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALALFSKMQETGTKL 522

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D +  +  L A S +   + G  +   C     G    +     L+D   R GH++ ++ 
Sbjct: 523 DHIAFTAILTACSHAGLVDQG-LQYFQCMKSDYGLAPKLEHYACLVDLLGRAGHLDEANG 581

Query: 474 VFEKI---PSPNV 483
           + + +   P  NV
Sbjct: 582 IIKNMSLEPDANV 594



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/406 (27%), Positives = 209/406 (51%), Gaps = 11/406 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M    + P   T+ ++ P C  ++ L     +  Y  +   + ++   N  ++ + K G+
Sbjct: 212 MQVNGIKPNSSTLVSVMPVCAHLLALEQGKQIHCYAIRSGIESDVLVVNGLVNMYAKCGN 271

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +N+A KLF+ MP RD+ ++N +I G        +AL  ++ M   GIK ++ T  SVL  
Sbjct: 272 VNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIKPNSITMVSVLPA 331

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++     +G QIH   +  GF  N  +G+ LV++Y + G    A  LF+ +P++N+  W
Sbjct: 332 CAHLFALEQGQQIHGYAIRSGFESNDVVGNALVNMYAKCGNVNSAYKLFERMPKKNVVAW 391

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  + +   P E L ++ +M+A+G++P+  +   ++  C+  + L++GKQ+H + I+
Sbjct: 392 NAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVSVLPACAHFLALEQGKQIHGYTIR 451

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ + N+ V   LVD Y+ CG++  A+K F+ +P  DV+SW +++  Y  +    DAL 
Sbjct: 452 SGF-ESNVVVGTGLVDIYAKCGNVNTAQKLFERMPEQDVVSWTTMILAYGIHGHGEDALA 510

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALT 356
           LF +MQ    +    +F   L   S  G V  G Q   Y   +  D+G    +   + L 
Sbjct: 511 LFSKMQETGTKLDHIAFTAILTACSHAGLVDQGLQ---YFQCMKSDYGLAPKLEHYACLV 567

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           D+ G+   ++ +  + ++    SLE   ++  +LL +  I   +E+
Sbjct: 568 DLLGRAGHLDEANGIIKNM---SLEPDANVWGALLGACRIHCNIEL 610



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 178/352 (50%), Gaps = 9/352 (2%)

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           ++ + W   +  Y        AL L+++MQ     P    F+  +       ++  G+++
Sbjct: 83  NNAVVWKETIIGYVKNGFWNKALRLYYQMQRTGINPDKLVFLSVIKACGSQSDLQAGRKV 142

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H  +   GF+   V V +AL  MY KC  +E++  VF+  P R +   N+++     +G 
Sbjct: 143 HEDIIARGFE-SDVIVGTALASMYTKCGSLENARQVFDRMPKRDVVSWNAIIAGYSQNGQ 201

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             +A+ +F  M   GI  +  TL + +   +   +   G  + +HC AI+SG ES++ V 
Sbjct: 202 PYEALALFSEMQVNGIKPNSSTLVSVMPVCAHLLALEQG--KQIHCYAIRSGIESDVLVV 259

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             L++ Y++CG++  +H++FE++P  +V  + +I+ GYS N    EAL     M  RG+ 
Sbjct: 260 NGLVNMYAKCGNVNTAHKLFERMPIRDVASWNAIIGGYSLNSQHHEALAFFNRMQVRGIK 319

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           P+ +T + VL  C H   +++GQ +   +++S  G +++    + +++M  + G ++ A 
Sbjct: 320 PNSITMVSVLPACAHLFALEQGQQIHGYAIRS--GFESNDVVGNALVNMYAKCGNVNSAY 377

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHG--NEIIGRRVANILMELEPVDFAVYS 624
           +L ++ P   + + W++++     HG  +E +   +      ++P  FA+ S
Sbjct: 378 KLFERMP-KKNVVAWNAIISGYSQHGHPHEALALFIEMQAQGIKPDSFAIVS 428


>gi|357508407|ref|XP_003624492.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499507|gb|AES80710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1125

 Score =  343 bits (879), Expect = 2e-91,   Method: Compositional matrix adjust.
 Identities = 204/627 (32%), Positives = 349/627 (55%), Gaps = 11/627 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  NI+S+N  I  ++KSG+L+ A+ LFD M  R  VT+ +LI G  +    ++A  L+ 
Sbjct: 128 PHKNIFSTNTMIMGYIKSGNLSEARTLFDSMFQRTAVTWTMLIGGYAQNNQFREAFGLFI 187

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM  HGI     + +++LS  +      E  Q+H  V+ LG+   L + + L+D Y +  
Sbjct: 188 EMGRHGIDPDHVSLATLLSGFTEFDSVNEVRQVHSHVIKLGYDSTLVVSNSLLDSYCKTR 247

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF+++PER+  T+N +L  + +     E + ++ KM+  G  P   +F  ++ 
Sbjct: 248 SLGLAFQLFNDIPERDSVTFNALLTGYSKEGFNREAINLFFKMQEVGYRPTEFTFAAIL- 306

Query: 220 GCSIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             + G+ LD+   G+Q+H  V+K  +V  N+FVANAL+DFYS    ++EA K F  +P  
Sbjct: 307 --TAGIQLDDIEFGQQVHGFVVKCNFV-WNVFVANALLDFYSKHDRVVEASKLFYEMPEV 363

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D IS+N +V+ YA    + ++LELF  +Q          F   L+ A+ + N+  G+QIH
Sbjct: 364 DGISYNVLVTCYAWNGRVKESLELFKELQFTGFDRRNFPFATLLSIAAISLNLDIGRQIH 423

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
              T +      + V ++L DMY KC     +  +F     +S     ++++S +  G  
Sbjct: 424 SQ-TIVTDAISEILVGNSLVDMYAKCGEFGEANRIFSDLAIQSSVPWTAMISSYVQKGLH 482

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           +D +++F  M    IG D  T ++ ++A +  AS  LG  + LH   I SG+ SN+    
Sbjct: 483 EDGLKLFVEMQRAKIGADAATYASIVRACASLASLTLG--KQLHSHIIGSGYISNVFSGS 540

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG I+ + Q+F+++P  N V + ++++ Y++NG G   L + E M++ GL P
Sbjct: 541 ALVDMYAKCGSIKDALQMFQEMPVRNSVSWNALISAYAQNGDGDCTLRLFEEMVRSGLQP 600

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D V+ L +L  C+H G+V+EG   F+SM  +Y +   ++HY+  IDML R G  D+AE+L
Sbjct: 601 DSVSLLSILCACSHCGLVEEGLQYFDSMTRIYKLVPKKEHYASTIDMLCRGGRFDEAEKL 660

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGE 635
           + Q P   D +MWSS+L SC +H N+ + ++ AN L  ++ + D A Y  +SN Y+  GE
Sbjct: 661 MAQMPFEPDEIMWSSVLNSCGIHKNQELAKKAANQLFNMKVLRDAAPYVTMSNIYAAAGE 720

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++   ++++    R + +   +S +E+
Sbjct: 721 WDNVGKVKKAMRERGVKKVPAYSWVEI 747


>gi|328774753|gb|AEB39776.1| pentatricopeptide repeat protein 78 [Funaria hygrometrica]
          Length = 1020

 Score =  342 bits (877), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 183/621 (29%), Positives = 345/621 (55%), Gaps = 4/621 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
            ++  +N  ++ + K G ++ A+++FD+M  + +V++ ++I G     H + A  ++ +M
Sbjct: 277 FDVNVANCILNMYAKCGSIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKM 336

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G+  +  T+ +VL+  S       G  +H  +L+ G   +L +G+ LV +Y + G  
Sbjct: 337 QQEGVVPNRITYINVLNAFSGPAALKWGKTVHSHILNAGHESDLAVGTALVKMYAKCGSY 396

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
                +F++L  R+L  WN M+    E    +E   +Y++M+ EG+ PN +++  ++  C
Sbjct: 397 KDCRQVFEKLVNRDLIAWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNAC 456

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                L  G+++HS V+K G++  +I V NAL+  Y+ CGS+ +A+  F+ +   D+ISW
Sbjct: 457 VNPTALHWGREIHSRVVKDGFM-FDISVQNALISMYARCGSIKDARLLFNKMVRKDIISW 515

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +++   A   L  +AL +F  MQ    +P+  ++   LN  S    + +G++IH  V +
Sbjct: 516 TAMIGGLAKSGLGAEALAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIE 575

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G      HV + L +MY  C  ++ +  VF+    R +   N+++         K+A++
Sbjct: 576 AGLA-TDAHVANTLVNMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALK 634

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  + +EG+  D+VT    L A + S S  L   + +H   +K G+ S+ ++  +L+  
Sbjct: 635 LFDRLQEEGLKPDKVTYINMLNACANSGS--LEWAKEIHSLVLKDGYLSDTSLGNALVST 692

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG    +  VF+K+   NV+ + +I+ G +++G G++ L + E M   G+ PD VTF
Sbjct: 693 YAKCGSFSDALLVFDKMMKRNVISWNAIIGGCAQHGRGQDVLQLFERMKMEGIKPDIVTF 752

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L+ C+H+G+++EG+  F SM   +GI    +HY CM+D+LGRAG LD+ E L++  P
Sbjct: 753 VSLLSACSHAGLLEEGRRYFCSMSRDFGITPTIEHYGCMVDLLGRAGQLDEVEALIKTMP 812

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              +  +W +LL +CR+HGN  +  R A   ++L+P + AVY  +S+ Y+  G ++ + +
Sbjct: 813 FQANTRIWGALLGACRIHGNVPVAERAAESSLKLDPDNAAVYVALSHMYAAAGMWDSAAK 872

Query: 642 IRETALARKLTRDIGHSLIEV 662
           +R+    R +T++ G S IEV
Sbjct: 873 LRKLMEQRGVTKEPGRSWIEV 893



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 136/565 (24%), Positives = 303/565 (53%), Gaps = 16/565 (2%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEM--PARDMVTYNLLISGCGKFRHPKQALYLYD 99
           L+ Y+ N  I+ +++ G +  A+++++++    R + ++N ++ G  ++ + ++AL L  
Sbjct: 174 LDQYTVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLR 233

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM  HG+    +T   +LS C +      G +IH   +      ++ + + ++++Y + G
Sbjct: 234 EMQQHGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFDVNVANCILNMYAKCG 293

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A ++FD++  +++ +W +++  + +    +    ++ KM+ EGV PN +++  ++ 
Sbjct: 294 SIHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLN 353

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             S    L  GK +HSH++  G  + ++ V  ALV  Y+ CGS  + ++ F+ +   D+I
Sbjct: 354 AFSGPAALKWGKTVHSHILNAG-HESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 412

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WN+++   A+     +A E++ +MQ     P+  ++V  LN       +++G++IH  V
Sbjct: 413 AWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRV 472

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF    + VQ+AL  MY +C  I+ +  +F     + +    +++  L  SG   +A
Sbjct: 473 VKDGFMF-DISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEA 531

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  M   G+  + VT ++ L A S  A+ + G  R +H   I++G  ++  V+ +L+
Sbjct: 532 LAVFQDMQQAGLKPNRVTYTSILNACSSPAALDWG--RRIHQQVIEAGLATDAHVANTLV 589

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           + YS CG ++ + QVF+++   ++V + +++ GY+ + +G+EAL + + + + GL PDKV
Sbjct: 590 NMYSMCGSVKDARQVFDRMTQRDIVAYNAMIGGYAAHNLGKEALKLFDRLQEEGLKPDKV 649

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA----EE 575
           T++ +L  C +SG ++  + + +S+    G  +D    + ++    + G    A    ++
Sbjct: 650 TYINMLNACANSGSLEWAKEI-HSLVLKDGYLSDTSLGNALVSTYAKCGSFSDALLVFDK 708

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHG 600
           ++++     + + W++++  C  HG
Sbjct: 709 MMKR-----NVISWNAIIGGCAQHG 728



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 124/505 (24%), Positives = 238/505 (47%), Gaps = 48/505 (9%)

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
           ++  D  + +   ++ +G   N   +  M++ C     L  G+++H H+I+   V ++ +
Sbjct: 119 ITGKDRAMDVVQYLQQQGARVNSCDYMKMLKRCIEVKDLVAGREVHEHIIQHCTV-LDQY 177

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQL 306
             NAL++ Y  CGS+ EA++ ++ +   +  V SWN++V  Y  Y  I +AL+L   MQ 
Sbjct: 178 TVNALINMYIQCGSIEEARQVWNKLNHTERTVHSWNAMVVGYVQYGYIEEALKLLREMQQ 237

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIH--GYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                   + +  L+       +  G++IH      +L FD   V+V + + +MY KC  
Sbjct: 238 HGLALGRATTMRLLSSCKSPSALECGREIHVEAMKARLLFD---VNVANCILNMYAKCGS 294

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           I  +  VF+    +S+     ++      G+ + A E+F  M  EG+  + +T    L A
Sbjct: 295 IHEAREVFDKMETKSVVSWTIIIGGYADCGHSEIAFEIFQKMQQEGVVPNRITYINVLNA 354

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            S  A+   G  + +H   + +G ES++AV  +L+  Y++CG  +   QVFEK+ + +++
Sbjct: 355 FSGPAALKWG--KTVHSHILNAGHESDLAVGTALVKMYAKCGSYKDCRQVFEKLVNRDLI 412

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-----------HSGM 533
            + +++ G +  G   EA ++   M + G++P+K+T++ +L  C            HS +
Sbjct: 413 AWNTMIGGLAEGGNWEEASEIYHQMQREGMMPNKITYVILLNACVNPTALHWGREIHSRV 472

Query: 534 VKEGQL----VFNSMKSVYG---------------IDADRQHYSCMIDMLGRAGILDKAE 574
           VK+G +    V N++ S+Y                +  D   ++ MI  L ++G+  +A 
Sbjct: 473 VKDGFMFDISVQNALISMYARCGSIKDARLLFNKMVRKDIISWTAMIGGLAKSGLGAEAL 532

Query: 575 ELLQQTPGGG---DCMMWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFAVYSQVSNFY 630
            + Q     G   + + ++S+L +C        GRR+   ++E     D  V + + N Y
Sbjct: 533 AVFQDMQQAGLKPNRVTYTSILNACSSPAALDWGRRIHQQVIEAGLATDAHVANTLVNMY 592

Query: 631 SEIGEFEVSMQIRETALARKLTRDI 655
           S  G  + + Q+      R   RDI
Sbjct: 593 SMCGSVKDARQV----FDRMTQRDI 613


>gi|78183583|dbj|BAD67156.2| PpPPR_77 [Physcomitrella patens]
          Length = 1106

 Score =  341 bits (875), Expect = 7e-91,   Method: Compositional matrix adjust.
 Identities = 191/655 (29%), Positives = 349/655 (53%), Gaps = 7/655 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T  ++   C++   L +  L+ S+   +    ++   N  I  + + G L  A++LF  M
Sbjct: 332 TYLSILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTM 391

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P RD++++N +I+G  +     +A+ LY +M S G+K    TF  +LS C+N+  Y +G 
Sbjct: 392 PKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGK 451

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            IH  +L  G   N ++ + L+++Y R G  + A ++F+    R++ +WN M+    +  
Sbjct: 452 MIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHG 511

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG-WVDVNIFV 249
             +   +++ +M+ E +EP+ ++F  ++ GC     L+ GKQ+H  + + G  +DVN+  
Sbjct: 512 SYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQLDVNL-- 569

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            NAL++ Y  CGSL +A+  F  +   DV+SW +++   AD      A+ELF++MQ    
Sbjct: 570 GNALINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGF 629

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
           RP   +F   L   + +  +  GK++  Y+   G++     V +AL   Y K   +  + 
Sbjct: 630 RPVKSTFSSILKVCTSSACLDEGKKVIAYILNSGYEL-DTGVGNALISAYSKSGSMTDAR 688

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            VF+  P R +   N ++     +G  + AVE    M ++ +  ++ +  + L A S  +
Sbjct: 689 EVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFS 748

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           +   G  + +H   +K   + ++ V  +L+  Y++CG    + +VF+ I   NVV + ++
Sbjct: 749 ALEEG--KRVHAEIVKRKLQGDVRVGAALISMYAKCGSQGEAQEVFDNIIEKNVVTWNAM 806

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           +N Y+++G+  +AL     M + G+ PD  TF  +L+ CNH+G+V EG  +F+SM+S YG
Sbjct: 807 INAYAQHGLASKALGFFNCMEKEGIKPDGSTFTSILSACNHAGLVLEGYQIFSSMESEYG 866

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
           +    +HY C++ +LGRA    +AE L+ Q P   D  +W +LL +CR+HGN  +    A
Sbjct: 867 VLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLGACRIHGNIALAEHAA 926

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           N  ++L   + AVY  +SN Y+  G ++   +IR     R + ++ G S IEV++
Sbjct: 927 NNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKEPGRSWIEVDN 981



 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 157/546 (28%), Positives = 292/546 (53%), Gaps = 6/546 (1%)

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           V+ G ++SAK+ F     RD+V YN LI+   +  H  +A   Y  M S G+  + +T+ 
Sbjct: 275 VRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYL 334

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S+L+ CS +     G  IH  +   G   ++ IG+ L+ +Y R G   +A +LF  +P+R
Sbjct: 335 SILNACSTSKALEAGKLIHSHISEDGHSSDVQIGNALISMYARCGDLPKARELFYTMPKR 394

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +L +WN ++  +       E +R+Y +M++EGV+P  ++F +++  C+      +GK +H
Sbjct: 395 DLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIH 454

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
             +++ G +  N  +ANAL++ Y  CGSL+EA+  F+     DVISWNS+++ +A +   
Sbjct: 455 EDILRSG-IKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSY 513

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
             A +LF  MQ     P   +F   L+       +  GKQIHG +T+ G     V++ +A
Sbjct: 514 ETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRITESGLQL-DVNLGNA 572

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L +MY +C  ++ +  VF S   R +    +++      G    A+E+F  M +EG    
Sbjct: 573 LINMYIRCGSLQDARNVFHSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPV 632

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           + T S+ LK  + SA  + G   + +   + SG+E +  V  +L+ AYS+ G +  + +V
Sbjct: 633 KSTFSSILKVCTSSACLDEGKKVIAYI--LNSGYELDTGVGNALISAYSKSGSMTDAREV 690

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F+K+PS ++V +  I+ GY++NG+G+ A++    M ++ ++P+K +F+ +L  C+    +
Sbjct: 691 FDKMPSRDIVSWNKIIAGYAQNGLGQTAVEFAYQMQEQDVVPNKFSFVSLLNACSSFSAL 750

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           +EG+ V   +     +  D +  + +I M  + G   +A+E+        + + W++++ 
Sbjct: 751 EEGKRVHAEIVK-RKLQGDVRVGAALISMYAKCGSQGEAQEVFDNII-EKNVVTWNAMIN 808

Query: 595 SCRVHG 600
           +   HG
Sbjct: 809 AYAQHG 814



 Score =  234 bits (596), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 152/598 (25%), Positives = 308/598 (51%), Gaps = 17/598 (2%)

Query: 12  TITTLAPTCTS--IVPLSSSL---LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           T   L   CT   ++P +  +   +++++  P+    I+ SN  I+ +VK   +  A ++
Sbjct: 29  TYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPD----IFLSNLLINMYVKCRSVLDAHQV 84

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F EMP RD++++N LIS   +    K+A  L++EM + G   +  T+ S+L+ C +    
Sbjct: 85  FKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAEL 144

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G +IH +++  G+  +  + + L+ +Y + G   RA  +F  +  R++ ++N ML  +
Sbjct: 145 ENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLY 204

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            + +   E L ++ +M +EG+ P+ +++  ++   +   +LDEGK++H   ++ G ++ +
Sbjct: 205 AQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEG-LNSD 263

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           I V  ALV     CG +  AK++F      DV+ +N++++  A +    +A E ++RM+ 
Sbjct: 264 IRVGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRS 323

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS-VHVQSALTDMYGKCNVI 365
                +  +++  LN  S +  +  GK IH ++++ G  H S V + +AL  MY +C  +
Sbjct: 324 DGVALNRTTYLSILNACSTSKALEAGKLIHSHISEDG--HSSDVQIGNALISMYARCGDL 381

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  +F + P R L   N+++       +  +A+ ++  M  EG+    VT    L A 
Sbjct: 382 PKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSAC 441

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           + S++   G  +++H   ++SG +SN  ++ +LM+ Y RCG +  +  VFE   + +V+ 
Sbjct: 442 ANSSAYADG--KMIHEDILRSGIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQARDVIS 499

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + S++ G++++G    A  + + M    L PD +TF  VL+GC +   ++ G+ +   + 
Sbjct: 500 WNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGKQIHGRIT 559

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
              G+  D    + +I+M  R G L  A  +        D M W++++  C   G ++
Sbjct: 560 ES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ-HRDVMSWTAMIGGCADQGEDM 615



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 135/558 (24%), Positives = 289/558 (51%), Gaps = 15/558 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +T+ ++L  C+      E  +IH +++    G ++++ + L+++Y++    + A  +F E
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAWVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P R++ +WN ++  + +     +  +++ +M+  G  PN +++  ++  C     L+ G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++HS +IK G+   +  V N+L+  Y  CG L  A++ F  I   DV+S+N+++ +YA 
Sbjct: 148 KKIHSQIIKAGY-QRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
              + + L LF +M      P   +++  L+  +    +  GK+IH    + G +   + 
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN-SDIR 265

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL  M  +C  ++S+   F+    R +   N+L+ +L   G+  +A E +  M  +G
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGTADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG 325

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           + L+  T  + L A S S +   G  +L+H    + G  S++ +  +L+  Y+RCG +  
Sbjct: 326 VALNRTTYLSILNACSTSKALEAG--KLIHSHISEDGHSSDVQIGNALISMYARCGDLPK 383

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + ++F  +P  +++ + +I+ GY+R     EA+ + + M   G+ P +VTFL +L+ C +
Sbjct: 384 ARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACAN 443

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           S    +G+++   +    GI ++    + +++M  R G L +A+ + + T    D + W+
Sbjct: 444 SSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWN 501

Query: 591 SLLRSCRVHGNEIIGRRVANILM--ELEPVDFAVYSQVSNFYS----EIGEFEVSMQIRE 644
           S++     HG+     ++   +   ELEP +    S +S   +    E+G+ ++  +I E
Sbjct: 502 SMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK-QIHGRITE 560

Query: 645 TALARKLTRDIGHSLIEV 662
           + L  +L  ++G++LI +
Sbjct: 561 SGL--QLDVNLGNALINM 576



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 218/425 (51%), Gaps = 3/425 (0%)

Query: 1   MLSTKLLP-RVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M S  + P RV  +  L+    S       ++ +   +   + N + +N  ++ + + G 
Sbjct: 422 MQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNGHLANALMNMYRRCGS 481

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+ +F+   ARD++++N +I+G  +    + A  L+ EM +  ++    TF+SVLS 
Sbjct: 482 LMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSG 541

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C N      G QIH R+   G  L++ +G+ L+++Y+R G    A ++F  L  R++ +W
Sbjct: 542 CKNPEALELGKQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVFHSLQHRDVMSW 601

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+    +     + + ++ +M+ EG  P   +F  +++ C+    LDEGK++ ++++ 
Sbjct: 602 TAMIGGCADQGEDMKAIELFWQMQNEGFRPVKSTFSSILKVCTSSACLDEGKKVIAYILN 661

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ +++  V NAL+  YS  GS+ +A++ FD +P  D++SWN I++ YA   L   A+E
Sbjct: 662 SGY-ELDTGVGNALISAYSKSGSMTDAREVFDKMPSRDIVSWNKIIAGYAQNGLGQTAVE 720

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
             ++MQ     P+  SFV  LN  S    +  GK++H  + K     G V V +AL  MY
Sbjct: 721 FAYQMQEQDVVPNKFSFVSLLNACSSFSALEEGKRVHAEIVKRKL-QGDVRVGAALISMY 779

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC     +  VF++   +++   N+++ +    G    A+  F  M  EGI  D  T +
Sbjct: 780 AKCGSQGEAQEVFDNIIEKNVVTWNAMINAYAQHGLASKALGFFNCMEKEGIKPDGSTFT 839

Query: 420 TTLKA 424
           + L A
Sbjct: 840 SILSA 844


>gi|296082276|emb|CBI21281.3| unnamed protein product [Vitis vinifera]
          Length = 785

 Score =  339 bits (870), Expect = 2e-90,   Method: Compositional matrix adjust.
 Identities = 206/628 (32%), Positives = 338/628 (53%), Gaps = 48/628 (7%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S+N  I  +VKSG+L  A+KLFD M  R  VT+ +LI G  +    K+A  L+ 
Sbjct: 74  PHKNTVSTNMMISGYVKSGNLGEARKLFDGMVERTAVTWTILIGGYSQLNQFKEAFELFV 133

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   G +    TF ++LS C+      +  Q+  +++ LG+   L +G+ LVD Y    
Sbjct: 134 QMQRCGTEPDYVTFVTLLSGCNGHEMGNQITQVQTQIIKLGYDSRLIVGNTLVDSY---- 189

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                                      C+ +R D   +++ +M      P   SF +   
Sbjct: 190 ---------------------------CKSNRLDLACQLFKEM------PEIDSFTFAAV 216

Query: 220 GCS-IGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            C+ IG  LD+   G+Q+HS VIK  +V  N+FV+NAL+DFYS   S+I+A+K FD +P 
Sbjct: 217 LCANIG--LDDIVLGQQIHSFVIKTNFV-WNVFVSNALLDFYSKHDSVIDARKLFDEMPE 273

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +S+N I+S YA       A +LF  +Q          F   L+ AS T +   G+QI
Sbjct: 274 QDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIASNTLDWEMGRQI 333

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H        D   + V ++L DMY KC   E +  +F +   RS     +++++ +  G 
Sbjct: 334 HAQTIVTTAD-SEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWTAMISAYVQKGF 392

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
            ++ +++F  M    +  D+ T ++ L+A +  AS +LG  + LH   IKSGF SN+   
Sbjct: 393 YEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLG--KQLHSFIIKSGFMSNVFSG 450

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +L+D Y++CG I+ + Q F+++P  N+V + ++++ Y++NG     L   + M+  GL 
Sbjct: 451 SALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQ 510

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD V+FL VL+ C+HSG+V+EG   FNSM  +Y +D  R+HY+ ++DML R+G  ++AE+
Sbjct: 511 PDSVSFLGVLSACSHSGLVEEGLWHFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEK 570

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIG 634
           L+ + P   D +MWSS+L +CR+H N+ + RR A+ L  +E + D A Y  +SN Y+  G
Sbjct: 571 LMAEMPIDPDEIMWSSVLNACRIHKNQELARRAADQLFNMEELRDAAPYVNMSNIYAAAG 630

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEV 662
           ++E   ++ +    R + +   +S +E+
Sbjct: 631 QWENVSKVHKAMRDRGVKKLPAYSWVEI 658



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 104/332 (31%), Positives = 174/332 (52%), Gaps = 6/332 (1%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLL---LDSYC-QPNPQLNIYSSNRTIDDFVKSGHL 60
           K +P + + T  A  C +I  L   +L   + S+  + N   N++ SN  +D + K   +
Sbjct: 203 KEMPEIDSFTFAAVLCANI-GLDDIVLGQQIHSFVIKTNFVWNVFVSNALLDFYSKHDSV 261

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A+KLFDEMP +D V+YN++ISG       K A  L+ E+           F+++LS+ 
Sbjct: 262 IDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFATMLSIA 321

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           SN   +  G QIH + +       + +G+ LVD+Y + G    A  +F  L  R+   W 
Sbjct: 322 SNTLDWEMGRQIHAQTIVTTADSEILVGNSLVDMYAKCGKFEEAEMIFTNLTHRSAVPWT 381

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            M+ A+ +    +E L+++NKM+   V  +  +F  ++R  +    L  GKQLHS +IK 
Sbjct: 382 AMISAYVQKGFYEEGLQLFNKMRQASVIADQATFASLLRASASIASLSLGKQLHSFIIKS 441

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G++  N+F  +AL+D Y+ CGS+ +A ++F  +P  +++SWN+++S YA        L+ 
Sbjct: 442 GFMS-NVFSGSALLDVYAKCGSIKDAVQTFQEMPDRNIVSWNAMISAYAQNGEAEATLKS 500

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           F  M L   +P   SF+  L+  S +G V  G
Sbjct: 501 FKEMVLSGLQPDSVSFLGVLSACSHSGLVEEG 532



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 92/412 (22%), Positives = 175/412 (42%), Gaps = 57/412 (13%)

Query: 172 PERNLATWNLM-LRAFCELSRPDEVLRMYNKMKAE----GVEPNGLSFCYMVRGCSIGML 226
           P R  A  NL  L +   L  P   L + N + A     G +P+     + V        
Sbjct: 3   PFRPNALQNLTSLTSLASLQSPKLRLNVVNNIDARIVKTGFDPDTSRSNFRVGNFLKNGE 62

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L + +QL   +     V  N+ ++      Y   G+L EA+K FD +     ++W  ++ 
Sbjct: 63  LSQARQLFEKMPHKNTVSTNMMISG-----YVKSGNLGEARKLFDGMVERTAVTWTILIG 117

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN--FASRTGNVYFGKQIHGYVTKLGF 344
            Y+  +   +A ELF +MQ C   P   +FV  L+       GN     Q+   + KLG+
Sbjct: 118 GYSQLNQFKEAFELFVQMQRCGTEPDYVTFVTLLSGCNGHEMGNQI--TQVQTQIIKLGY 175

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D   + V + L D Y K N ++ +  +F+  P                       ++ F 
Sbjct: 176 DSRLI-VGNTLVDSYCKSNRLDLACQLFKEMP----------------------EIDSFT 212

Query: 405 F--MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  ++   IGLD++ L                  + +H   IK+ F  N+ VS +L+D Y
Sbjct: 213 FAAVLCANIGLDDIVLG-----------------QQIHSFVIKTNFVWNVFVSNALLDFY 255

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           S+   +  + ++F+++P  + V +  I++GY+ +G  + A D+   +        +  F 
Sbjct: 256 SKHDSVIDARKLFDEMPEQDGVSYNVIISGYAWDGKHKYAFDLFRELQFTAFDRKQFPFA 315

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            +L+  +++   + G+ + ++   V   D++    + ++DM  + G  ++AE
Sbjct: 316 TMLSIASNTLDWEMGRQI-HAQTIVTTADSEILVGNSLVDMYAKCGKFEEAE 366



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/190 (27%), Positives = 94/190 (49%), Gaps = 6/190 (3%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T  +L     SI  LS    L S+   +  + N++S +  +D + K G +  A + F EM
Sbjct: 414 TFASLLRASASIASLSLGKQLHSFIIKSGFMSNVFSGSALLDVYAKCGSIKDAVQTFQEM 473

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P R++V++N +IS   +    +  L  + EMV  G++  + +F  VLS CS++G   EG+
Sbjct: 474 PDRNIVSWNAMISAYAQNGEAEATLKSFKEMVLSGLQPDSVSFLGVLSACSHSGLVEEGL 533

Query: 131 QIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRAFC 187
             H   ++  + L+      + +VD+  R G    A  L  E+P + +   W+ +L A C
Sbjct: 534 W-HFNSMTQIYKLDPRREHYASVVDMLCRSGRFNEAEKLMAEMPIDPDEIMWSSVLNA-C 591

Query: 188 ELSRPDEVLR 197
            + +  E+ R
Sbjct: 592 RIHKNQELAR 601


>gi|18418348|ref|NP_567948.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635622|sp|O81767.2|PP348_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g33990; AltName: Full=Protein EMBRYO DEFECTIVE 2758
 gi|332660906|gb|AEE86306.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 823

 Score =  339 bits (870), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 199/658 (30%), Positives = 353/658 (53%), Gaps = 16/658 (2%)

Query: 10  VRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKLFD 68
           +  + TL   CT+   L S+  L +    + Q+ N+  S + ++ +   G++  A+  FD
Sbjct: 54  IDDVHTLFRYCTN---LQSAKCLHARLVVSKQIQNVCISAKLVNLYCYLGNVALARHTFD 110

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDE-MVSHGIKESASTFSSVLSVCSNAGFYT 127
            +  RD+  +NL+ISG G+  +  + +  +   M+S G+     TF SVL  C       
Sbjct: 111 HIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV---I 167

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
           +G +IHC  L  GF  ++Y+ + L+ LY R      A  LFDE+P R++ +WN M+  +C
Sbjct: 168 DGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISGYC 227

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +     E L + N ++A     + ++   ++  C+     + G  +HS+ IK G ++  +
Sbjct: 228 QSGNAKEALTLSNGLRA----MDSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG-LESEL 282

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV+N L+D Y+  G L + +K FD + V D+ISWNSI+  Y   +    A+ LF  M+L 
Sbjct: 283 FVSNKLIDLYAEFGRLRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMRLS 342

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
           R +P   + +   +  S+ G++   + + G+  + G+    + + +A+  MY K  +++S
Sbjct: 343 RIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDS 402

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKALS 426
           + AVF   P   +   N++++    +G   +A+EM+  M +EG I  ++ T  + L A S
Sbjct: 403 ARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPACS 462

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            + +   G    LH   +K+G   ++ V  SL D Y +CG +E +  +F +IP  N V +
Sbjct: 463 QAGALRQG--MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSVPW 520

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++  +  +G G +A+ + + M+  G+ PD +TF+ +L+ C+HSG+V EGQ  F  M++
Sbjct: 521 NTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMMQT 580

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            YGI    +HY CM+DM GRAG L+ A + ++      D  +W +LL +CRVHGN  +G+
Sbjct: 581 DYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDLGK 640

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             +  L E+EP     +  +SN Y+  G++E   +IR  A  + L +  G S +EV++
Sbjct: 641 IASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDN 698


>gi|414587344|tpg|DAA37915.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
 gi|414587345|tpg|DAA37916.1| TPA: hypothetical protein ZEAMMB73_465451 [Zea mays]
          Length = 920

 Score =  339 bits (869), Expect = 3e-90,   Method: Compositional matrix adjust.
 Identities = 207/670 (30%), Positives = 353/670 (52%), Gaps = 10/670 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL---NIYSSNRTIDDFVKS 57
           M  T ++P    ++++   CT     +   ++  + Q   Q      +  N  I  ++  
Sbjct: 135 MHWTAVIPTPYVLSSVLSACTKGKLFAQGRMI--HAQVYKQAFCSETFVGNALIALYLGF 192

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G    A+++F +M   D VT+N LISG  +  H + AL ++DEM   G++    T +S+L
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           + C++ G   +G Q+H  +L  G   +      L+DLY++ G    A D+F+     N+ 
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVV 312

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            WNLML A+ ++S   +   ++ +M+A G+ PN  ++  ++R C+    ++ G+Q+HS  
Sbjct: 313 LWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLS 372

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           IK G+ + +++V+  L+D YS  G L +A+K  + +   DV+SW S+++ Y  +D   +A
Sbjct: 373 IKNGF-ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L  F  MQ C   P         +  +    +  G QIH  V   G+    + + + L +
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYA-ADISIWNTLVN 490

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           +Y +C   E + ++F     +     N L++    S   K A+ +F  M   G   +  T
Sbjct: 491 LYARCGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFT 550

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
             + + AL+  A    G  + +H  A+K+G  S   V+ +L+  Y +CG IE +  +F +
Sbjct: 551 FISAISALANLADIKQG--KQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSE 608

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +   N V + +I+   S++G G EALD+ + M Q GL P+ VTF+ VLA C+H G+V+EG
Sbjct: 609 MSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEG 668

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
              F SM +VYG++    HY+C++D+LGRAG LD+A   + + P   + M+W +LL +C+
Sbjct: 669 LSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACK 728

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           VH N  IG   A  L+ELEP D A Y  +SN Y+  G++    Q+R+    R + ++ G 
Sbjct: 729 VHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGR 788

Query: 658 SLIEV-NSCH 666
           S IEV N+ H
Sbjct: 789 SWIEVKNAVH 798



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 131/556 (23%), Positives = 276/556 (49%), Gaps = 12/556 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K+G +  A+++F E+ +RD V++  ++SG  +    K+A  LY +M    + 
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI 141

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +    SSVLS C+    + +G  IH +V    F    ++G+ L+ LY+  G    A  +
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++   +  T+N ++    +    +  L+++++M+  G+ P+ ++   ++  C+    L
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +GKQLHS+++K G +  +     +L+D Y  CG +  A   F+     +V+ WN ++  
Sbjct: 262 QKGKQLHSYLLKAG-MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y     +  + E+F +MQ     P+  ++   L   + TG +  G+QIH    K GF+  
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE-S 379

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++V   L DMY K   ++ +  + E    R +    S++   +     ++A+  F  M 
Sbjct: 380 DMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQ 439

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSR 464
           D G+  D + L++     + SA A + + R    +H     SG+ ++I++  +L++ Y+R
Sbjct: 440 DCGVWPDNIGLAS-----AASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYAR 494

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG  E +  +F +I   + + +  +++G+ ++ + ++AL +   M Q G   +  TF+  
Sbjct: 495 CGRSEEAFSLFREIEHKDEITWNGLISGFGQSRLYKQALMVFMKMGQAGAKYNVFTFISA 554

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           ++   +   +K+G+ V        G  ++ +  + +I + G+ G ++ A+ +  +     
Sbjct: 555 ISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRN 613

Query: 585 DCMMWSSLLRSCRVHG 600
           + + W++++ SC  HG
Sbjct: 614 E-VSWNTIITSCSQHG 628



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 132/505 (26%), Positives = 244/505 (48%), Gaps = 7/505 (1%)

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG-FYTEGIQIHCRVLSLGFGLNLYIG 148
           +P++ L L     SH     ++  +  L  C   G  +   ++IH   +  G G +  IG
Sbjct: 22  NPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIG 81

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + L+DLY + G   +A  +F EL  R+  +W  ML  + +     E  R+Y++M    V 
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQSGLGKEAFRLYSQMHWTAVI 141

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P       ++  C+ G L  +G+ +H+ V K  +     FV NAL+  Y   GS   A++
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCS-ETFVGNALIALYLGFGSFKLAER 200

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +   D +++N+++S +A       AL++F  MQL   RP   +    L   +  G+
Sbjct: 201 VFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  GKQ+H Y+ K G     +  + +L D+Y KC  IE++  +F      ++   N ++ 
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYI-TEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLV 319

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
           +     ++  + E+FG M   GI  ++ T    L+  + +    LG    +H  +IK+GF
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIHPNQFTYPCILRTCTCTGQIELG--EQIHSLSIKNGF 377

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           ES++ VS  L+D YS+ G ++ + ++ E +   +VV +TS++ GY ++    EAL   + 
Sbjct: 378 ESDMYVSGVLIDMYSKYGCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M   G+ PD +      + C     +++G L  ++   V G  AD   ++ ++++  R G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQG-LQIHARVYVSGYAADISIWNTLVNLYARCG 496

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLL 593
             ++A  L ++     D + W+ L+
Sbjct: 497 RSEEAFSLFREIE-HKDEITWNGLI 520


>gi|356502293|ref|XP_003519954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 1047

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 195/623 (31%), Positives = 340/623 (54%), Gaps = 4/623 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L  Y  N  +  + + G+   A+++F+ M  RD V+YN LISG  +  +  +AL L+ +M
Sbjct: 304 LETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKALELFKKM 363

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +K    T +S+LS CS+ G    G Q H   +  G   ++ +   L+DLY++    
Sbjct: 364 CLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMSSDIILEGALLDLYVKCSDI 423

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A + F      N+  WN+ML A+  L   +E  +++ +M+ EG+EPN  ++  ++R C
Sbjct: 424 KTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQFTYPSILRTC 483

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S    +D G+Q+H+ V+K G+   N++V++ L+D Y+  G L  A K F  +   DV+SW
Sbjct: 484 SSLRAVDLGEQIHTQVLKTGF-QFNVYVSSVLIDMYAKLGKLDHALKIFRRLKEKDVVSW 542

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            ++++ YA ++   +AL LF  MQ          F   ++  +    +  G+QIH     
Sbjct: 543 TAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQALNQGQQIHAQACV 602

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G+    + V +AL  +Y +C  +  +   F+    +     NSL++    SG+ ++A+ 
Sbjct: 603 SGYS-DDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGFAQSGHCEEALS 661

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M   G  ++  T    + A +  A+  LG  + +H   IK+G +S   VS  L+  
Sbjct: 662 LFSQMSKAGQEINSFTFGPAVSAAANVANVKLG--KQIHAMIIKTGHDSETEVSNVLITL 719

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG+I+ + + F ++P  N + + +++ GYS++G G +AL + E M Q G++P+ VTF
Sbjct: 720 YAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQLGVLPNHVTF 779

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL+ C+H G+V EG   F SM+ V+G+    +HY+C++D+LGR+G+L +A   +++ P
Sbjct: 780 VGVLSACSHVGLVDEGIKYFQSMREVHGLVPKPEHYACVVDLLGRSGLLSRARRFVEEMP 839

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D M+  +LL +C VH N  IG   A+ L+ELEP D A Y  +SN Y+  G++    +
Sbjct: 840 IQPDAMVCRTLLSACIVHKNIDIGEFAASHLLELEPKDSATYVLLSNMYAVTGKWGCRDR 899

Query: 642 IRETALARKLTRDIGHSLIEVNS 664
            R+    R + ++ G S IEVN+
Sbjct: 900 TRQMMKDRGVKKEPGRSWIEVNN 922



 Score =  242 bits (617), Expect = 5e-61,   Method: Compositional matrix adjust.
 Identities = 165/604 (27%), Positives = 310/604 (51%), Gaps = 10/604 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTS-IVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSG 58
           ML  K+ P  RT   +   C    VP      + +    +   N ++  N  ID + K+G
Sbjct: 160 MLQEKVKPDERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNG 219

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            LNSAKK+FD +  RD V++  ++SG  +    ++A+ L+ +M + G+  +   FSSVLS
Sbjct: 220 FLNSAKKVFDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLS 279

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C+   FY  G Q+H  VL  GF L  Y+ + LV LY R+G  + A  +F+ + +R+  +
Sbjct: 280 ACTKVEFYKVGEQLHGLVLKQGFSLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVS 339

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIGMLLDEGKQLHSHV 237
           +N ++    +    D+ L ++ KM  + ++P+ ++   ++  C S+G LL  GKQ HS+ 
Sbjct: 340 YNSLISGLSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALL-VGKQFHSYA 398

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           IK G +  +I +  AL+D Y  C  +  A + F     ++V+ WN ++  Y   D + ++
Sbjct: 399 IKAG-MSSDIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNES 457

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
            ++F +MQ+    P+  ++   L   S    V  G+QIH  V K GF   +V+V S L D
Sbjct: 458 FKIFTQMQMEGIEPNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQF-NVYVSSVLID 516

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY K   ++ ++ +F     + +    +++          +A+ +F  M D+GI  D + 
Sbjct: 517 MYAKLGKLDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIG 576

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
            ++ + A +   + N G  + +H  A  SG+  +++V  +L+  Y+RCG +  ++  F+K
Sbjct: 577 FASAISACAGIQALNQG--QQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDK 634

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           I S + + + S+++G++++G   EAL +   M + G   +  TF   ++   +   VK G
Sbjct: 635 IFSKDNISWNSLISGFAQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLG 694

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           + + ++M    G D++ +  + +I +  + G +D AE    + P   + + W+++L    
Sbjct: 695 KQI-HAMIIKTGHDSETEVSNVLITLYAKCGNIDDAERQFFEMPEKNE-ISWNAMLTGYS 752

Query: 598 VHGN 601
            HG+
Sbjct: 753 QHGH 756



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 145/546 (26%), Positives = 274/546 (50%), Gaps = 7/546 (1%)

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE 108
           R +D ++  G L+ A  +FDEMP R +  +N ++      +   + L L+  M+   +K 
Sbjct: 108 RLMDLYIAFGDLDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKP 167

Query: 109 SASTFSSVLSVCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
              T++ VL  C         ++ IH R ++ G+  +L++ +PL+DLY + G    A  +
Sbjct: 168 DERTYAGVLRGCGGGDVPFHCVEKIHARTITHGYENSLFVCNPLIDLYFKNGFLNSAKKV 227

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD L +R+  +W  ML    +    +E + ++ +M   GV P    F  ++  C+     
Sbjct: 228 FDGLQKRDSVSWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFY 287

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G+QLH  V+K G+  +  +V NALV  YS  G+ I A++ F+ +   D +S+NS++S 
Sbjct: 288 KVGEQLHGLVLKQGF-SLETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISG 346

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
            +       ALELF +M L   +P   +    L+  S  G +  GKQ H Y  K G    
Sbjct: 347 LSQQGYSDKALELFKKMCLDCLKPDCVTVASLLSACSSVGALLVGKQFHSYAIKAGMS-S 405

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            + ++ AL D+Y KC+ I+++   F S    ++   N ++ +     N+ ++ ++F  M 
Sbjct: 406 DIILEGALLDLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQ 465

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            EGI  ++ T  + L+  S   + +LG    +H   +K+GF+ N+ VS  L+D Y++ G 
Sbjct: 466 MEGIEPNQFTYPSILRTCSSLRAVDLG--EQIHTQVLKTGFQFNVYVSSVLIDMYAKLGK 523

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           ++ + ++F ++   +VV +T+++ GY+++    EAL++ + M  +G+  D + F   ++ 
Sbjct: 524 LDHALKIFRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISA 583

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C     + +GQ + ++   V G   D    + ++ +  R G +  A     +     D +
Sbjct: 584 CAGIQALNQGQQI-HAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIF-SKDNI 641

Query: 588 MWSSLL 593
            W+SL+
Sbjct: 642 SWNSLI 647



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 134/500 (26%), Positives = 248/500 (49%), Gaps = 7/500 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G++ ++ T+  +L  C ++G++++G ++H ++L +GF   + +   L+DLY+  G 
Sbjct: 59  MEERGVRANSQTYLWLLDGCLSSGWFSDGWKLHGKILKMGFCAEVVLCERLMDLYIAFGD 118

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A+ +FDE+P R L+ WN +L  F        VL ++ +M  E V+P+  ++  ++RG
Sbjct: 119 LDGAVTVFDEMPVRPLSCWNKVLHRFVAGKMAGRVLGLFRRMLQEKVKPDERTYAGVLRG 178

Query: 221 CSIG-MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           C  G +     +++H+  I  G+ + ++FV N L+D Y   G L  AKK FD +   D +
Sbjct: 179 CGGGDVPFHCVEKIHARTITHGYEN-SLFVCNPLIDLYFKNGFLNSAKKVFDGLQKRDSV 237

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +++S  +      +A+ LF +M      P+   F   L+  ++      G+Q+HG V
Sbjct: 238 SWVAMLSGLSQSGCEEEAVLLFCQMHTSGVYPTPYIFSSVLSACTKVEFYKVGEQLHGLV 297

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF     +V +AL  +Y +      +  VF +   R     NSL++ L   G    A
Sbjct: 298 LKQGFSL-ETYVCNALVTLYSRLGNFIPAEQVFNAMLQRDEVSYNSLISGLSQQGYSDKA 356

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +E+F  M  + +  D VT+++ L A S   +  +G  +  H  AIK+G  S+I +  +L+
Sbjct: 357 LELFKKMCLDCLKPDCVTVASLLSACSSVGALLVG--KQFHSYAIKAGMSSDIILEGALL 414

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +C  I+ +H+ F    + NVV +  ++  Y       E+  +   M   G+ P++ 
Sbjct: 415 DLYVKCSDIKTAHEFFLSTETENVVLWNVMLVAYGLLDNLNESFKIFTQMQMEGIEPNQF 474

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           T+  +L  C+    V  G+ +   +    G   +    S +IDM  + G LD A ++ ++
Sbjct: 475 TYPSILRTCSSLRAVDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKLGKLDHALKIFRR 533

Query: 580 TPGGGDCMMWSSLLRSCRVH 599
                D + W++++     H
Sbjct: 534 LK-EKDVVSWTAMIAGYAQH 552



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/398 (27%), Positives = 196/398 (49%), Gaps = 17/398 (4%)

Query: 8   PRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T  ++  TC+S+  +     +     +   Q N+Y S+  ID + K G L+ A K+
Sbjct: 471 PNQFTYPSILRTCSSLRAVDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKLGKLDHALKI 530

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  +  +D+V++  +I+G  +     +AL L+ EM   GI      F+S +S C+     
Sbjct: 531 FRRLKEKDVVSWTAMIAGYAQHEKFAEALNLFKEMQDQGIHSDNIGFASAISACAGIQAL 590

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            +G QIH +    G+  +L +G+ LV LY R G    A   FD++  ++  +WN ++  F
Sbjct: 591 NQGQQIHAQACVSGYSDDLSVGNALVSLYARCGKVRDAYFAFDKIFSKDNISWNSLISGF 650

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +    +E L ++++M   G E N  +F   V   +    +  GKQ+H+ +IK G  D  
Sbjct: 651 AQSGHCEEALSLFSQMSKAGQEINSFTFGPAVSAAANVANVKLGKQIHAMIIKTGH-DSE 709

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             V+N L+  Y+ CG++ +A++ F  +P  + ISWN++++ Y+ +   F AL LF  M+ 
Sbjct: 710 TEVSNVLITLYAKCGNIDDAERQFFEMPEKNEISWNAMLTGYSQHGHGFKALSLFEDMKQ 769

Query: 307 CRKRPSIRSFVEFLNFASRTGNV-----YFG--KQIHGYVTKLGFDHGSVHVQSALTDMY 359
               P+  +FV  L+  S  G V     YF   +++HG V K   +H      + + D+ 
Sbjct: 770 LGVLPNHVTFVGVLSACSHVGLVDEGIKYFQSMREVHGLVPKP--EH-----YACVVDLL 822

Query: 360 GKCNVIESSVAVFESAPGR-SLECCNSLMTSLLHSGNI 396
           G+  ++  +    E  P +     C +L+++ +   NI
Sbjct: 823 GRSGLLSRARRFVEEMPIQPDAMVCRTLLSACIVHKNI 860


>gi|356570253|ref|XP_003553304.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Glycine max]
          Length = 815

 Score =  338 bits (868), Expect = 4e-90,   Method: Compositional matrix adjust.
 Identities = 202/627 (32%), Positives = 351/627 (55%), Gaps = 11/627 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N+ S+N  I  ++KSG+L++A+ LFD M  R +VT+ +LI G  +     +A  L+ 
Sbjct: 69  PHKNVISTNTMIMGYLKSGNLSTARSLFDSMVQRSVVTWTMLIGGYAQHNRFLEAFNLFA 128

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M  HG+     T +++LS  +      E  Q+H  V+ +G+   L + + L+D Y +  
Sbjct: 129 DMCRHGMVPDHITLATLLSGFTEFESVNEVAQVHGHVVKVGYDSTLMVCNSLLDSYCKTR 188

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF  + E++  T+N +L  + +     + + ++ KM+  G  P+  +F  ++ 
Sbjct: 189 SLGLACHLFKHMAEKDNVTFNALLTGYSKEGFNHDAINLFFKMQDLGFRPSEFTFAAVL- 247

Query: 220 GCSIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             + G+ +D+   G+Q+HS V+K  +V  N+FVANAL+DFYS    ++EA+K F  +P  
Sbjct: 248 --TAGIQMDDIEFGQQVHSFVVKCNFV-WNVFVANALLDFYSKHDRIVEARKLFYEMPEV 304

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D IS+N +++  A    + ++LELF  +Q  R       F   L+ A+ + N+  G+QIH
Sbjct: 305 DGISYNVLITCCAWNGRVEESLELFRELQFTRFDRRQFPFATLLSIAANSLNLEMGRQIH 364

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
                +      V V ++L DMY KC+    +  +F     +S     +L++  +  G  
Sbjct: 365 SQAI-VTDAISEVLVGNSLVDMYAKCDKFGEANRIFADLAHQSSVPWTALISGYVQKGLH 423

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           +D +++F  M    IG D  T ++ L+A +  AS  LG  + LH   I+SG  SN+    
Sbjct: 424 EDGLKLFVEMHRAKIGADSATYASILRACANLASLTLG--KQLHSRIIRSGCLSNVFSGS 481

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG I+ + Q+F+++P  N V + ++++ Y++NG G  AL   E MI  GL P
Sbjct: 482 ALVDMYAKCGSIKEALQMFQEMPVRNSVSWNALISAYAQNGDGGHALRSFEQMIHSGLQP 541

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + V+FL +L  C+H G+V+EG   FNSM  VY ++  R+HY+ M+DML R+G  D+AE+L
Sbjct: 542 NSVSFLSILCACSHCGLVEEGLQYFNSMTQVYKLEPRREHYASMVDMLCRSGRFDEAEKL 601

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGE 635
           + + P   D +MWSS+L SCR+H N+ +  + A+ L  ++ + D A Y  +SN Y+  GE
Sbjct: 602 MARMPFEPDEIMWSSILNSCRIHKNQELAIKAADQLFNMKGLRDAAPYVSMSNIYAAAGE 661

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++   ++++    R + +   +S +E+
Sbjct: 662 WDSVGKVKKALRERGIRKVPAYSWVEI 688


>gi|359483488|ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 933

 Score =  338 bits (866), Expect = 7e-90,   Method: Compositional matrix adjust.
 Identities = 188/622 (30%), Positives = 351/622 (56%), Gaps = 6/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ +N  +  + K      +K+LFDE+P R++V++N L S   +     +A+ L+ EMV
Sbjct: 191 DVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMV 250

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GIK +  + SS+++ C+     + G  IH  ++ LG+  + +  + LVD+Y ++G   
Sbjct: 251 LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLA 310

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+ +F+++ + ++ +WN ++         ++ L +  +MK  G+ PN  +    ++ C+
Sbjct: 311 DAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACA 370

Query: 223 IGMLLDE-GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
            GM L E G+QLHS ++K+  ++ ++FV+  LVD YS C  L +A+ +F+ +P  D+I+W
Sbjct: 371 -GMGLKELGRQLHSSLMKMD-MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAW 428

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+I+S Y+ Y    +AL LF  M       +  +    L   +    V+  +Q+HG   K
Sbjct: 429 NAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVK 488

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF H  ++V ++L D YGKC+ +E +  +FE      L    S++T+    G  ++A++
Sbjct: 489 SGF-HSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALK 547

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M D  +  D    S+ L A +  ++   G  + LH   +K GF  +I    SL++ 
Sbjct: 548 LFLEMQDMELKPDRFVCSSLLNACANLSAFEQG--KQLHVHILKYGFVLDIFAGNSLVNM 605

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG I+ + + F ++    +V +++++ G +++G GR+AL +   M++ G+ P+ +T 
Sbjct: 606 YAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITL 665

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL  CNH+G+V E +L F SM+ ++G    ++HY+CMID+LGRAG +++A EL+ + P
Sbjct: 666 VSVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMP 725

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              +  +W +LL + R+H +  +GRR A +L  LEP     +  ++N Y+  G++E   +
Sbjct: 726 FEANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAE 785

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R      K+ ++ G S IEV 
Sbjct: 786 VRRLMRDSKVKKEPGMSWIEVK 807



 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 310/613 (50%), Gaps = 20/613 (3%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           +KLL +  T  +L P       ++ S L D     N  +N+YS  R             A
Sbjct: 60  SKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRN---------FGYA 110

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +KL DE    D+V+++ LISG  +      AL  + EM   G+K +  TFSSVL  CS  
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                G Q+H  V+  GF  ++++ + LV +Y +    + +  LFDE+PERN+ +WN + 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
             + ++    E + ++ +M   G++PN  S   MV  C+       GK +H ++IKLG+ 
Sbjct: 231 SCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY- 289

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           D + F ANALVD Y+  G L +A   F+ I   D++SWN++++    ++    ALEL  +
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M+     P+I +    L   +  G    G+Q+H  + K+  +   + V   L DMY KC+
Sbjct: 350 MKRSGICPNIFTLSSALKACAGMGLKELGRQLHSSLMKMDME-SDLFVSVGLVDMYSKCD 408

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           ++E +   F   P + L   N++++         +A+ +F  M  EGIG ++ TLST LK
Sbjct: 409 LLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK 468

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
             S +    +  CR +H  ++KSGF S+I V  SL+D+Y +C H+E + ++FE+    ++
Sbjct: 469 --STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDL 526

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFN 542
           V FTS++  Y++ G G EAL +   M    L PD+     +L  C +    ++G QL  +
Sbjct: 527 VSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVH 586

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            +K  YG   D    + +++M  + G +D A     +    G  + WS+++     HG+ 
Sbjct: 587 ILK--YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG-IVSWSAMIGGLAQHGH- 642

Query: 603 IIGRRVANILMEL 615
             GR+   +  ++
Sbjct: 643 --GRQALQLFNQM 653



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 163/585 (27%), Positives = 286/585 (48%), Gaps = 13/585 (2%)

Query: 81  LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140
           LI    +F    Q   + + +       ++ ++S +LS C        G+QIH  +   G
Sbjct: 27  LIQTVPQFSQDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
              +  I + L++LY +      A  L DE  E +L +W+ ++  + +       L  ++
Sbjct: 87  LSDDPSIRNHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M   GV+ N  +F  +++ CSI   L  GKQ+H  V+  G+ + ++FVAN LV  Y+ C
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGF-EGDVFVANTLVVMYAKC 205

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
              +++K+ FD IP  +V+SWN++ S Y   D   +A+ LF+ M L   +P+  S    +
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
           N  +   +   GK IHGY+ KLG+D       +AL DMY K   +  +++VFE      +
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSA-NALVDMYAKVGDLADAISVFEKIKQPDI 324

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
              N+++   +   + + A+E+ G M   GI  +  TLS+ LKA +      LG  R LH
Sbjct: 325 VSWNAVIAGCVLHEHHEQALELLGQMKRSGICPNIFTLSSALKACAGMGLKELG--RQLH 382

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
              +K   ES++ VS  L+D YS+C  +E +   F  +P  +++ + +I++GYS+     
Sbjct: 383 SSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 442

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSC 559
           EAL +   M + G+  ++ T   +L       +V   + V   S+KS  G  +D    + 
Sbjct: 443 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS--GFHSDIYVVNS 500

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN--EIIGRRVANILMELEP 617
           +ID  G+   ++ AE + ++    GD + ++S++ +   +G   E +   +    MEL+P
Sbjct: 501 LIDSYGKCSHVEDAERIFEECT-IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKP 559

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI--GHSLI 660
             F V S + N  + +  FE   Q+    L      DI  G+SL+
Sbjct: 560 DRF-VCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV 603



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+I++ N  ++ + K G ++ A + F E+  R +V+++ +I G  +  H +QAL L+++M
Sbjct: 594 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQM 653

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMG 159
           +  G+  +  T  SVL  C++AG  TE  +++   +   FG        + ++DL  R G
Sbjct: 654 LKEGVSPNHITLVSVLGACNHAGLVTEA-KLYFESMEELFGFKPMQEHYACMIDLLGRAG 712

Query: 160 PSVRALDLFDELP-ERNLATWNLMLRA 185
               A++L +++P E N + W  +L A
Sbjct: 713 KINEAVELVNKMPFEANASVWGALLGA 739


>gi|224123788|ref|XP_002319164.1| predicted protein [Populus trichocarpa]
 gi|222857540|gb|EEE95087.1| predicted protein [Populus trichocarpa]
          Length = 989

 Score =  337 bits (865), Expect = 9e-90,   Method: Compositional matrix adjust.
 Identities = 205/669 (30%), Positives = 354/669 (52%), Gaps = 8/669 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M +  + P     +++   CT I        L +   +    L  Y  N  +  + +  +
Sbjct: 204 MHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPN 263

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
             SA+K+F +M ++D V++N LISG  +      AL L+ +M    +K    T +S+LS 
Sbjct: 264 FVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSA 323

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++ G   +G Q+H  V+  G   ++ +   L+DLY+       A ++F      N+  W
Sbjct: 324 CASNGALCKGEQLHSYVIKAGISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLW 383

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N+ML AF +L    E  R++ +M+ +G+ PN  ++  ++R C+    LD G+Q+H+ VIK
Sbjct: 384 NVMLVAFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIK 443

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+   N++V + L+D Y+  G L  A      +  DDV+SW +++S YA ++L  +AL+
Sbjct: 444 TGF-QFNVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALK 502

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F  M     +     F   ++  +    +  G+QIH      G+    + + +AL  +Y
Sbjct: 503 HFKEMLNRGIQSDNIGFSSAISACAGIQALNQGRQIHAQSYVSGYSE-DLSIGNALVSLY 561

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +C  I+ +   FE    +     N L++    SG  +DA+++F  M    +   E +  
Sbjct: 562 ARCGRIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKL---EASFF 618

Query: 420 TTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           T   A+S +A+ AN+   + +H   IK GF+S+I VS +L+  Y++CG IE + + F ++
Sbjct: 619 TFGSAVSAAANIANIKQGKQIHAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEM 678

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           P  N V + +++ GYS++G G EA+++ E M Q G +P+ VTF+ VL+ C+H G+V +G 
Sbjct: 679 PEKNDVSWNAMITGYSQHGYGNEAVNLFEKMKQVGEMPNHVTFVGVLSACSHVGLVTKGL 738

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F SM   +G+     HY+C++D++ RAG L +A + +++ P   D  +W +LL +C V
Sbjct: 739 GYFESMSKEHGLVPKPAHYACVVDLISRAGFLSRARKFIEEMPIEPDATIWRTLLSACTV 798

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H N  +G   A  L+ELEP D A Y  +SN Y+  G+++   Q R+    R + ++ G S
Sbjct: 799 HKNVEVGEFAAQHLLELEPEDSATYVLLSNMYAVSGKWDCRDQTRQMMRNRGVKKEPGRS 858

Query: 659 LIEV-NSCH 666
            IEV NS H
Sbjct: 859 WIEVKNSVH 867



 Score =  228 bits (582), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 146/572 (25%), Positives = 293/572 (51%), Gaps = 9/572 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  I  + K+G + SA+K+FD +  +D V++  +ISG  +  + ++A++L+ EM + GI
Sbjct: 150 SNPLIGLYAKNGLIISARKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGI 209

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +   FSSVLS C+    +  G Q+H  V   G  L  Y+ + LV LY RM   V A  
Sbjct: 210 FPTPYVFSSVLSGCTKIKLFDVGEQLHALVFKYGSSLETYVCNALVTLYSRMPNFVSAEK 269

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F ++  ++  ++N ++    +    D  L ++ KMK + ++P+ ++   ++  C+    
Sbjct: 270 VFSKMQSKDEVSFNSLISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGA 329

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +G+QLHS+VIK G +  ++ V  AL+D Y  C  +  A + F     ++V+ WN ++ 
Sbjct: 330 LCKGEQLHSYVIKAG-ISSDMIVEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLV 388

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            +   D + ++  +F +MQ+    P+  ++   L   +  G +  G+QIH  V K GF  
Sbjct: 389 AFGKLDNLSESFRIFRQMQIKGLIPNQFTYPSILRTCTSVGALDLGEQIHTQVIKTGFQF 448

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            +V+V S L DMY K   ++++  +  +     +    +L++         +A++ F  M
Sbjct: 449 -NVYVCSVLIDMYAKHGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEM 507

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           ++ GI  D +  S+ + A +   + N G  R +H  +  SG+  ++++  +L+  Y+RCG
Sbjct: 508 LNRGIQSDNIGFSSAISACAGIQALNQG--RQIHAQSYVSGYSEDLSIGNALVSLYARCG 565

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            I+ ++  FEKI + + + +  +++G++++G   +AL +   M +  L     TF   ++
Sbjct: 566 RIKEAYLEFEKIDAKDSISWNGLISGFAQSGYCEDALKVFAQMNRAKLEASFFTFGSAVS 625

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
              +   +K+G+ + ++M    G D+D +  + +I    + G ++ A     + P   D 
Sbjct: 626 AAANIANIKQGKQI-HAMIIKRGFDSDIEVSNALITFYAKCGSIEDARREFCEMPEKND- 683

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           + W++++     HG    G    N+  +++ V
Sbjct: 684 VSWNAMITGYSQHG---YGNEAVNLFEKMKQV 712



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 143/549 (26%), Positives = 279/549 (50%), Gaps = 11/549 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N+ +D +   G L+   K+F++MP R + +++ +ISG  + +   + L L+  M+   + 
Sbjct: 49  NKLVDVYFALGDLDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVS 108

Query: 108 ESASTFSSVLSVCSNAGF---YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            +  +F+SVL  CS       Y E  QIH R++  G   +  I +PL+ LY + G  + A
Sbjct: 109 PTEISFASVLRACSGHRIGIRYAE--QIHARIICHGLLCSPIISNPLIGLYAKNGLIISA 166

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD L  ++  +W  M+  F +    +E + ++ +M   G+ P    F  ++ GC+  
Sbjct: 167 RKVFDNLCTKDSVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKI 226

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            L D G+QLH+ V K G   +  +V NALV  YS   + + A+K F  +   D +S+NS+
Sbjct: 227 KLFDVGEQLHALVFKYG-SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSL 285

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S  A       ALELF +M+    +P   +    L+  +  G +  G+Q+H YV K G 
Sbjct: 286 ISGLAQQGFSDGALELFTKMKRDYLKPDCVTVASLLSACASNGALCKGEQLHSYVIKAGI 345

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               + V+ AL D+Y  C+ I+++  +F +A   ++   N ++ +     N+ ++  +F 
Sbjct: 346 SSDMI-VEGALLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFR 404

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  +G+  ++ T  + L+  +   + +LG    +H   IK+GF+ N+ V   L+D Y++
Sbjct: 405 QMQIKGLIPNQFTYPSILRTCTSVGALDLG--EQIHTQVIKTGFQFNVYVCSVLIDMYAK 462

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G ++ +H +   +   +VV +T++++GY+++ +  EAL   + M+ RG+  D + F   
Sbjct: 463 HGKLDTAHVILRTLTEDDVVSWTALISGYAQHNLFAEALKHFKEMLNRGIQSDNIGFSSA 522

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           ++ C     + +G+ + ++   V G   D    + ++ +  R G + +A    ++     
Sbjct: 523 ISACAGIQALNQGRQI-HAQSYVSGYSEDLSIGNALVSLYARCGRIKEAYLEFEKID-AK 580

Query: 585 DCMMWSSLL 593
           D + W+ L+
Sbjct: 581 DSISWNGLI 589



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 246/502 (49%), Gaps = 11/502 (2%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   GI  +  T+  +L +C N+G   E  ++H ++L LGFG    + + LVD+Y  +G 
Sbjct: 1   MEHRGICANCQTYIWLLDLCLNSGSLVECKKLHGKILKLGFGNESVLCNKLVDVYFALGD 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
               + +F+++P R++ +W+ ++  F E    + VL +++ M  E V P  +SF  ++R 
Sbjct: 61  LDGVVKVFEDMPNRSVRSWDKIISGFMEKKMSNRVLDLFSCMIEENVSPTEISFASVLRA 120

Query: 221 CS---IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           CS   IG+   E  Q+H+ +I  G +   I ++N L+  Y+  G +I A+K FD +   D
Sbjct: 121 CSGHRIGIRYAE--QIHARIICHGLLCSPI-ISNPLIGLYAKNGLIISARKVFDNLCTKD 177

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +SW +++S ++      +A+ LF  M      P+   F   L+  ++      G+Q+H 
Sbjct: 178 SVSWVAMISGFSQNGYEEEAIHLFCEMHTAGIFPTPYVFSSVLSGCTKIKLFDVGEQLHA 237

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            V K G      +V +AL  +Y +     S+  VF     +     NSL++ L   G   
Sbjct: 238 LVFKYG-SSLETYVCNALVTLYSRMPNFVSAEKVFSKMQSKDEVSFNSLISGLAQQGFSD 296

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A+E+F  M  + +  D VT+++ L A   +++  L     LH   IK+G  S++ V  +
Sbjct: 297 GALELFTKMKRDYLKPDCVTVASLLSA--CASNGALCKGEQLHSYVIKAGISSDMIVEGA 354

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y  C  I+ +H++F    + NVV +  ++  + +     E+  +   M  +GLIP+
Sbjct: 355 LLDLYVNCSDIKTAHEMFLTAQTENVVLWNVMLVAFGKLDNLSESFRIFRQMQIKGLIPN 414

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           + T+  +L  C   G +  G+ +   +    G   +    S +IDM  + G LD A  +L
Sbjct: 415 QFTYPSILRTCTSVGALDLGEQIHTQVIKT-GFQFNVYVCSVLIDMYAKHGKLDTAHVIL 473

Query: 578 QQTPGGGDCMMWSSLLRSCRVH 599
            +T    D + W++L+     H
Sbjct: 474 -RTLTEDDVVSWTALISGYAQH 494


>gi|15221304|ref|NP_177599.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75169837|sp|Q9CA56.1|PP121_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g74600, chloroplastic; Flags: Precursor
 gi|12324789|gb|AAG52351.1|AC011765_3 hypothetical protein; 84160-81473 [Arabidopsis thaliana]
 gi|332197493|gb|AEE35614.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 895

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 197/652 (30%), Positives = 348/652 (53%), Gaps = 18/652 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P   T +++   C S+  L    ++ +        +++     +D + K GH+  A ++F
Sbjct: 249 PDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDVFVCTAIVDLYAKCGHMAEAMEVF 308

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
             +P   +V++ +++SG  K      AL ++ EM   G++ +  T +SV+S C       
Sbjct: 309 SRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSMVC 368

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP---SVRALDLFDELPERNLATWNLMLR 184
           E  Q+H  V   GF L+  + + L+ +Y + G    S +  +  D++  +N+   N+M+ 
Sbjct: 369 EASQVHAWVFKSGFYLDSSVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIV--NVMIT 426

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           +F +  +P + +R++ +M  EG+  +  S C ++   S+   L+ GKQ+H + +K G V 
Sbjct: 427 SFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLL---SVLDCLNLGKQVHGYTLKSGLV- 482

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           +++ V ++L   YS CGSL E+ K F  IP  D   W S++S + +Y  + +A+ LF  M
Sbjct: 483 LDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFSEM 542

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P   +    L   S   ++  GK+IHGY  + G D G + + SAL +MY KC  
Sbjct: 543 LDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRAGIDKG-MDLGSALVNMYSKCGS 601

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++ +  V++  P      C+SL++     G I+D   +F  MV  G  +D   +S+ LKA
Sbjct: 602 LKLARQVYDRLPELDPVSCSSLISGYSQHGLIQDGFLLFRDMVMSGFTMDSFAISSILKA 661

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            ++S  ++LG+   +H    K G  +  +V  SL+  YS+ G I+   + F +I  P+++
Sbjct: 662 AALSDESSLGA--QVHAYITKIGLCTEPSVGSSLLTMYSKFGSIDDCCKAFSQINGPDLI 719

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T+++  Y+++G   EAL +  +M ++G  PDKVTF+ VL+ C+H G+V+E     NSM
Sbjct: 720 AWTALIASYAQHGKANEALQVYNLMKEKGFKPDKVTFVGVLSACSHGGLVEESYFHLNSM 779

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
              YGI+ + +HY CM+D LGR+G L +AE  +       D ++W +LL +C++HG   +
Sbjct: 780 VKDYGIEPENRHYVCMVDALGRSGRLREAESFINNMHIKPDALVWGTLLAACKIHGEVEL 839

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           G+  A   +ELEP D   Y  +SN  +E+GE++   ++ ET   RKL +  G
Sbjct: 840 GKVAAKKAIELEPSDAGAYISLSNILAEVGEWD---EVEET---RKLMKGTG 885



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 159/574 (27%), Positives = 279/574 (48%), Gaps = 20/574 (3%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           LL  Y  P    +++ +   +  +  SG +  A KLFD +P  D+V+ N++ISG  + R 
Sbjct: 74  LLRRYLLP---FDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMISGYKQHRL 130

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCS--NAGFYTEGIQIHCRVLSLGFGLNLYIG 148
            +++L  + +M   G + +  ++ SV+S CS   A  ++E   + C  + +G+     + 
Sbjct: 131 FEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSE--LVCCHTIKMGYFFYEVVE 188

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           S L+D++ +      A  +F +    N+  WN ++           V  ++++M     +
Sbjct: 189 SALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCVGFQK 248

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+  ++  ++  C+    L  GK + + VIK G  DV  FV  A+VD Y+ CG + EA +
Sbjct: 249 PDSYTYSSVLAACASLEKLRFGKVVQARVIKCGAEDV--FVCTAIVDLYAKCGHMAEAME 306

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  IP   V+SW  ++S Y   +  F ALE+F  M+      +  +    ++   R   
Sbjct: 307 VFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVISACGRPSM 366

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLM 387
           V    Q+H +V K GF   S  V +AL  MY K   I+ S  VFE     +     N ++
Sbjct: 367 VCEASQVHAWVFKSGFYLDS-SVAAALISMYSKSGDIDLSEQVFEDLDDIQRQNIVNVMI 425

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           TS   S     A+ +F  M+ EG+  DE ++ + L  L      NLG  + +H   +KSG
Sbjct: 426 TSFSQSKKPGKAIRLFTRMLQEGLRTDEFSVCSLLSVLDC---LNLG--KQVHGYTLKSG 480

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
              ++ V  SL   YS+CG +E S+++F+ IP  +  C+ S+++G++  G  REA+ +  
Sbjct: 481 LVLDLTVGSSLFTLYSKCGSLEESYKLFQGIPFKDNACWASMISGFNEYGYLREAIGLFS 540

Query: 508 VMIQRGLIPDKVTFLCVLAGC-NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
            M+  G  PD+ T   VL  C +H  + +  ++   ++++  GID      S +++M  +
Sbjct: 541 EMLDDGTSPDESTLAAVLTVCSSHPSLPRGKEIHGYTLRA--GIDKGMDLGSALVNMYSK 598

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            G L  A ++  + P   D +  SSL+     HG
Sbjct: 599 CGSLKLARQVYDRLP-ELDPVSCSSLISGYSQHG 631



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 176/356 (49%), Gaps = 13/356 (3%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L   K L +H+++   +  ++F+  +L+ +YS  GS+ +A K FD IP  DV+S N ++S
Sbjct: 64  LRTTKILQAHLLRRYLLPFDVFLTKSLLSWYSNSGSMADAAKLFDTIPQPDVVSCNIMIS 123

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y  + L  ++L  F +M       +  S+   ++  S      F + +  +  K+G+  
Sbjct: 124 GYKQHRLFEESLRFFSKMHFLGFEANEISYGSVISACSALQAPLFSELVCCHTIKMGYFF 183

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V+SAL D++ K    E +  VF  +   ++ C N+++   L + N     ++F  M
Sbjct: 184 YEV-VESALIDVFSKNLRFEDAYKVFRDSLSANVYCWNTIIAGALRNQNYGAVFDLFHEM 242

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
                  D  T S+ L A +       G  +++    IK G E ++ V  +++D Y++CG
Sbjct: 243 CVGFQKPDSYTYSSVLAACASLEKLRFG--KVVQARVIKCGAE-DVFVCTAIVDLYAKCG 299

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           H+  + +VF +IP+P+VV +T +++GY+++     AL++ + M   G+  +  T   V++
Sbjct: 300 HMAEAMEVFSRIPNPSVVSWTVMLSGYTKSNDAFSALEIFKEMRHSGVEINNCTVTSVIS 359

Query: 527 GCNHSGMVKEGQ----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            C    MV E       VF S     G   D    + +I M  ++G +D +E++ +
Sbjct: 360 ACGRPSMVCEASQVHAWVFKS-----GFYLDSSVAAALISMYSKSGDIDLSEQVFE 410


>gi|334185633|ref|NP_189226.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546761|sp|Q9LU94.2|PP255_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25970
 gi|332643575|gb|AEE77096.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 701

 Score =  337 bits (863), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 205/630 (32%), Positives = 346/630 (54%), Gaps = 15/630 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLYD 99
           +IY SNR +D ++K G L  A  LFDEMP RD V++N +ISG   CGK    + A  L+ 
Sbjct: 34  DIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL---EDAWCLFT 90

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G      +FS +L   ++   +  G Q+H  V+  G+  N+Y+GS LVD+Y +  
Sbjct: 91  CMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCE 150

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMV 218
               A + F E+ E N  +WN ++  F ++        +   M+ +  V  +  +F  ++
Sbjct: 151 RVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLL 210

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDD 277
                 M  +  KQ+H+ V+KLG +   I + NA++  Y+ CGS+ +AK+ FD +    D
Sbjct: 211 TLLDDPMFCNLLKQVHAKVLKLG-LQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKD 269

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           +ISWNS+++ ++ ++L   A ELF +MQ       I ++   L+  S   +  FGK +HG
Sbjct: 270 LISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSGEEHQIFGKSLHG 329

Query: 338 YVTKLGFDHGSVHVQSALTDMYGK--CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
            V K G +       +AL  MY +     +E ++++FES   + L   NS++T     G 
Sbjct: 330 MVIKKGLEQ-VTSATNALISMYIQFPTGTMEDALSLFESLKSKDLISWNSIITGFAQKGL 388

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
            +DAV+ F ++    I +D+   S  L++ S  A+  LG  + +H  A KSGF SN  V 
Sbjct: 389 SEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLG--QQIHALATKSGFVSNEFVI 446

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
            SL+  YS+CG IE + + F++I S +  V + +++ GY+++G+G+ +LD+   M  + +
Sbjct: 447 SSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLGQVSLDLFSQMCNQNV 506

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
             D VTF  +L  C+H+G+++EG  + N M+ VY I    +HY+  +D+LGRAG+++KA+
Sbjct: 507 KLDHVTFTAILTACSHTGLIQEGLELLNLMEPVYKIQPRMEHYAAAVDLLGRAGLVNKAK 566

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           EL++  P   D M+  + L  CR  G   +  +VAN L+E+EP D   Y  +S+ YS++ 
Sbjct: 567 ELIESMPLNPDPMVLKTFLGVCRACGEIEMATQVANHLLEIEPEDHFTYVSLSHMYSDLK 626

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           ++E    +++    R + +  G S IE+ +
Sbjct: 627 KWEEKASVKKMMKERGVKKVPGWSWIEIRN 656



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 114/475 (24%), Positives = 225/475 (47%), Gaps = 15/475 (3%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           HC  +  G   ++Y+ + ++D Y++ G    A  LFDE+P+R+  +WN M+  +    + 
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           ++   ++  MK  G + +G SF  +++G +     D G+Q+H  VIK G+ + N++V ++
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGY-ECNVYVGSS 141

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           LVD Y+ C  + +A ++F  I   + +SWN+++   A +  + D    F+ + L   + +
Sbjct: 142 LVDMYAKCERVEDAFEAFKEISEPNSVSWNALI---AGFVQVRDIKTAFWLLGLMEMKAA 198

Query: 313 IR----SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
           +     +F   L            KQ+H  V KLG  H  + + +A+   Y  C  +  +
Sbjct: 199 VTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQH-EITICNAMISSYADCGSVSDA 257

Query: 369 VAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
             VF+   G + L   NS++         + A E+F  M    +  D  T +  L A S 
Sbjct: 258 KRVFDGLGGSKDLISWNSMIAGFSKHELKESAFELFIQMQRHWVETDIYTYTGLLSACSG 317

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR--CGHIELSHQVFEKIPSPNVVC 485
                 G  + LH   IK G E   + + +L+  Y +   G +E +  +FE + S +++ 
Sbjct: 318 EEHQIFG--KSLHGMVIKKGLEQVTSATNALISMYIQFPTGTMEDALSLFESLKSKDLIS 375

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + SI+ G+++ G+  +A+     +    +  D   F  +L  C+    ++ GQ + +++ 
Sbjct: 376 WNSIITGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQI-HALA 434

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +  G  ++    S +I M  + GI++ A +  QQ       + W++++     HG
Sbjct: 435 TKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHG 489



 Score = 48.9 bits (115), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           L HC AIK G  S+I VS  ++D+Y + G +  ++ +F+++P  + V + ++++GY+  G
Sbjct: 21  LTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCG 80

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
              +A  +   M + G   D  +F  +L G
Sbjct: 81  KLEDAWCLFTCMKRSGSDVDGYSFSRLLKG 110


>gi|147812559|emb|CAN70631.1| hypothetical protein VITISV_020725 [Vitis vinifera]
          Length = 713

 Score =  336 bits (862), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 184/624 (29%), Positives = 331/624 (53%), Gaps = 5/624 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q ++  SN+ + + VK+GHL +A+++FD+M  +D +++  LISG        +AL L+  
Sbjct: 46  QTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKN 105

Query: 101 M-VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           M V  G++      S     C        G  +H   +  G   ++++GS L+D+Y + G
Sbjct: 106 MRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG 165

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                  +F E+P RN+ +W  ++          E L  +++M    VE +  +F   ++
Sbjct: 166 KIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALK 225

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+ G+++H+  +K G+ DV+ FVAN L   Y+ CG L      F+ + + DV+
Sbjct: 226 ACADSGALNYGREIHAQAMKKGF-DVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVV 284

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +I++          A++ F RM+     P+  +F   ++  +    + +G+Q+H  +
Sbjct: 285 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALI 344

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             LG    S+ V++++  MY KC  + SS  +F     R +   ++++      G++ +A
Sbjct: 345 LHLGLA-ASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYXQGGHVSEA 403

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
            E+  +M  EG    E  L++ L A    A    G  + LH   +  G E    V  +L+
Sbjct: 404 FELLSWMRMEGPKPTEFALASVLSACGNMAILEHG--KQLHAYVLSIGLEHTAMVLSALI 461

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           + Y +CG IE + ++F+   + ++V +T+++NGY+ +G  RE +D+ E + + GL PD V
Sbjct: 462 NMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSV 521

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL+ C+H+G+V  G   FN+M   Y I   ++HY CMID+L RAG L  AE +++ 
Sbjct: 522 TFIGVLSACSHAGLVDLGFHYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEA 581

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D ++WS+LLR+CRVHG+   GRR A  +++LEP     +  ++N Y+  G++  +
Sbjct: 582 MPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREA 641

Query: 640 MQIRETALARKLTRDIGHSLIEVN 663
             IR+   ++ + ++ G S I+V 
Sbjct: 642 ADIRKLMKSKGVIKEPGWSWIKVK 665


>gi|225430696|ref|XP_002266026.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840 [Vitis vinifera]
          Length = 713

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 184/624 (29%), Positives = 331/624 (53%), Gaps = 5/624 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q ++  SN+ + + VK+GHL +A+++FD+M  +D +++  LISG        +AL L+  
Sbjct: 46  QTDLPESNKQLKELVKTGHLGNARRMFDKMSQKDEISWTTLISGYVNANDSSEALLLFKN 105

Query: 101 M-VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           M V  G++      S     C        G  +H   +  G   ++++GS L+D+Y + G
Sbjct: 106 MRVESGLRIDPFILSLAHKACGLNSDVNYGELLHGYAVKTGLVNSVFVGSALLDMYTKNG 165

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                  +F E+P RN+ +W  ++          E L  +++M    VE +  +F   ++
Sbjct: 166 KIFEGRRVFHEMPMRNVVSWTAIITGLVRAGYNKEALVYFSEMWRSRVEYDSYTFAIALK 225

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+ G+++H+  +K G+ DV+ FVAN L   Y+ CG L      F+ + + DV+
Sbjct: 226 ACADSGALNYGREIHAQAMKKGF-DVSSFVANTLATMYNKCGKLEYGLTLFEKMSMRDVV 284

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +I++          A++ F RM+     P+  +F   ++  +    + +G+Q+H  +
Sbjct: 285 SWTTIITTLVQMGQEECAVQAFIRMRESDVSPNEYTFAAVISGCANLARIEWGEQLHALI 344

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             LG    S+ V++++  MY KC  + SS  +F     R +   ++++      G++ +A
Sbjct: 345 LHLGLA-ASLSVENSIMTMYAKCGQLTSSSVIFHEMTRRDIVSWSTIIAGYSQGGHVSEA 403

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
            E+  +M  EG    E  L++ L A    A    G  + LH   +  G E    V  +L+
Sbjct: 404 FELLSWMRMEGPKPTEFALASVLSACGNMAILEHG--KQLHAYVLSIGLEHTAMVLSALI 461

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           + Y +CG IE + ++F+   + ++V +T+++NGY+ +G  RE +D+ E + + GL PD V
Sbjct: 462 NMYCKCGSIEEASRIFDAAENDDIVSWTAMINGYAEHGYSREVIDLFEKIPRVGLRPDSV 521

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL+ C+H+G+V  G   FN+M   Y I   ++HY CMID+L RAG L  AE +++ 
Sbjct: 522 TFIGVLSACSHAGLVDLGFRYFNAMSKKYQISPSKEHYGCMIDLLCRAGRLSDAEHMIEA 581

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D ++WS+LLR+CRVHG+   GRR A  +++LEP     +  ++N Y+  G++  +
Sbjct: 582 MPFHRDDVVWSTLLRACRVHGDVERGRRTAERILQLEPNCAGTHITLANIYASKGKWREA 641

Query: 640 MQIRETALARKLTRDIGHSLIEVN 663
             IR+   ++ + ++ G S I+V 
Sbjct: 642 ADIRKLMKSKGVIKEPGWSWIKVK 665


>gi|4455294|emb|CAB36829.1| putative protein [Arabidopsis thaliana]
 gi|7268069|emb|CAB78407.1| putative protein [Arabidopsis thaliana]
          Length = 1024

 Score =  336 bits (861), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 200/625 (32%), Positives = 327/625 (52%), Gaps = 5/625 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N  +  +   G+L SA+ +F  M  RD VTYN LI+G  +  + ++A+ L+  M 
Sbjct: 282 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 341

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++  ++T +S++  CS  G    G Q+H     LGF  N  I   L++LY +     
Sbjct: 342 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 401

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            ALD F E    N+  WN+ML A+  L       R++ +M+ E + PN  ++  +++ C 
Sbjct: 402 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 461

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ G+Q+HS +IK  +  +N +V + L+D Y+  G L  A          DV+SW 
Sbjct: 462 RLGDLELGEQIHSQIIKTNF-QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 520

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y  Y+    AL  F +M     R         ++  +    +  G+QIH      
Sbjct: 521 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 580

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF    +  Q+AL  +Y +C  IE S   FE          N+L++    SGN ++A+ +
Sbjct: 581 GFS-SDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 639

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EGI  +  T  + +KA   S +AN+   + +H    K+G++S   V  +L+  Y
Sbjct: 640 FVRMNREGIDNNNFTFGSAVKA--ASETANMKQGKQVHAVITKTGYDSETEVCNALISMY 697

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG I  + + F ++ + N V + +I+N YS++G G EALD  + MI   + P+ VT +
Sbjct: 698 AKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLV 757

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C+H G+V +G   F SM S YG+    +HY C++DML RAG+L +A+E +Q+ P 
Sbjct: 758 GVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPI 817

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D ++W +LL +C VH N  IG   A+ L+ELEP D A Y  +SN Y+   +++     
Sbjct: 818 KPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLT 877

Query: 643 RETALARKLTRDIGHSLIEV-NSCH 666
           R+    + + ++ G S IEV NS H
Sbjct: 878 RQKMKEKGVKKEPGQSWIEVKNSIH 902



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/573 (26%), Positives = 287/573 (50%), Gaps = 21/573 (3%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L DS    NP +++YS N         G ++ A+++FD +  +D  ++  +ISG  K   
Sbjct: 178 LRDSTVVCNPLIDLYSRN---------GFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 228

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
             +A+ L+ +M   GI  +   FSSVLS C        G Q+H  VL LGF  + Y+ + 
Sbjct: 229 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 288

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV LY  +G  + A  +F  + +R+  T+N ++    +    ++ + ++ +M  +G+EP+
Sbjct: 289 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 348

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +   +V  CS    L  G+QLH++  KLG+   N  +  AL++ Y+ C  +  A   F
Sbjct: 349 SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK-IEGALLNLYAKCADIETALDYF 407

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
               V++V+ WN ++  Y   D + ++  +F +MQ+    P+  ++   L    R G++ 
Sbjct: 408 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 467

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G+QIH  + K  F   + +V S L DMY K   ++++  +     G+ +    +++   
Sbjct: 468 LGEQIHSQIIKTNFQLNA-YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 526

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSG 447
                   A+  F  M+D GI  DEV L+      +VSA A L + +    +H  A  SG
Sbjct: 527 TQYNFDDKALTTFRQMLDRGIRSDEVGLTN-----AVSACAGLQALKEGQQIHAQACVSG 581

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           F S++    +L+  YSRCG IE S+  FE+  + + + + ++++G+ ++G   EAL +  
Sbjct: 582 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFV 641

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M + G+  +  TF   +   + +  +K+G+ V +++ +  G D++ +  + +I M  + 
Sbjct: 642 RMNREGIDNNNFTFGSAVKAASETANMKQGKQV-HAVITKTGYDSETEVCNALISMYAKC 700

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           G +  AE+   +     + + W++++ +   HG
Sbjct: 701 GSISDAEKQFLEVSTKNE-VSWNAIINAYSKHG 732



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 155/574 (27%), Positives = 278/574 (48%), Gaps = 8/574 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           S +  D ++  G L  A K+FDEMP R + T+N +I          +   L+  MVS  +
Sbjct: 83  SEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV 142

Query: 107 KESASTFSSVLSVCSNAGFYTEGI-QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
             +  TFS VL  C       + + QIH R+L  G   +  + +PL+DLY R G    A 
Sbjct: 143 TPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 202

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FD L  ++ ++W  M+    +     E +R++  M   G+ P   +F  ++  C    
Sbjct: 203 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 262

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L+ G+QLH  V+KLG+   + +V NALV  Y   G+LI A+  F  +   D +++N+++
Sbjct: 263 SLEIGEQLHGLVLKLGF-SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 321

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           +  +       A+ELF RM L    P   +    +   S  G ++ G+Q+H Y TKLGF 
Sbjct: 322 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 381

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
             +  ++ AL ++Y KC  IE+++  F      ++   N ++ +     +++++  +F  
Sbjct: 382 SNN-KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 440

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  E I  ++ T  + LK         LG    +H   IK+ F+ N  V   L+D Y++ 
Sbjct: 441 MQIEEIVPNQYTYPSILKTCIRLGDLELG--EQIHSQIIKTNFQLNAYVCSVLIDMYAKL 498

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ +  +  +    +VV +T+++ GY++     +AL     M+ RG+  D+V     +
Sbjct: 499 GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 558

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C     +KEGQ + ++   V G  +D    + ++ +  R G ++++    +QT   GD
Sbjct: 559 SACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE-AGD 616

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
            + W++L+   +  GN     RV  + M  E +D
Sbjct: 617 NIAWNALVSGFQQSGNNEEALRVF-VRMNREGID 649



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 136/500 (27%), Positives = 248/500 (49%), Gaps = 14/500 (2%)

Query: 99  DEMVSHGIKESASTFSSVLSVC-SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           D + + GI+ +  T   +L  C    G   EG ++H ++L LG   N  +   L D Y+ 
Sbjct: 33  DSVENRGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLF 92

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +FDE+PER + TWN M++     +   EV  ++ +M +E V PN  +F  +
Sbjct: 93  KGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGV 152

Query: 218 VRGCSIG-MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +  C  G +  D  +Q+H+ ++  G  D  + V N L+D YS  G +  A++ FD + + 
Sbjct: 153 LEACRGGSVAFDVVEQIHARILYQGLRDSTV-VCNPLIDLYSRNGFVDLARRVFDGLRLK 211

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D  SW +++S  +  +   +A+ LF  M +    P+  +F   L+   +  ++  G+Q+H
Sbjct: 212 DHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLH 271

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G V KLGF     +V +AL  +Y     + S+  +F +   R     N+L+  L   G  
Sbjct: 272 GLVLKLGFS-SDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 330

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + A+E+F  M  +G+  D  TL++ +  ++ SA   L   + LH    K GF SN  +  
Sbjct: 331 EKAMELFKRMHLDGLEPDSNTLASLV--VACSADGTLFRGQQLHAYTTKLGFASNNKIEG 388

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L++ Y++C  IE +   F +    NVV +  ++  Y      R +  +   M    ++P
Sbjct: 389 ALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 448

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSC--MIDMLGRAGILDKA 573
           ++ T+  +L  C   G ++ G+ + +  +K+ + ++A    Y C  +IDM  + G LD A
Sbjct: 449 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTNFQLNA----YVCSVLIDMYAKLGKLDTA 504

Query: 574 EELLQQTPGGGDCMMWSSLL 593
            ++L +   G D + W++++
Sbjct: 505 WDILIRF-AGKDVVSWTTMI 523


>gi|42566761|ref|NP_193101.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635639|sp|Q9SVP7.2|PP307_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g13650
 gi|332657909|gb|AEE83309.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1064

 Score =  335 bits (860), Expect = 3e-89,   Method: Compositional matrix adjust.
 Identities = 200/625 (32%), Positives = 327/625 (52%), Gaps = 5/625 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N  +  +   G+L SA+ +F  M  RD VTYN LI+G  +  + ++A+ L+  M 
Sbjct: 322 DTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMH 381

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++  ++T +S++  CS  G    G Q+H     LGF  N  I   L++LY +     
Sbjct: 382 LDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIE 441

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            ALD F E    N+  WN+ML A+  L       R++ +M+ E + PN  ++  +++ C 
Sbjct: 442 TALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 501

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ G+Q+HS +IK  +  +N +V + L+D Y+  G L  A          DV+SW 
Sbjct: 502 RLGDLELGEQIHSQIIKTNF-QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 560

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y  Y+    AL  F +M     R         ++  +    +  G+QIH      
Sbjct: 561 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 620

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF    +  Q+AL  +Y +C  IE S   FE          N+L++    SGN ++A+ +
Sbjct: 621 GFS-SDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 679

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EGI  +  T  + +KA   S +AN+   + +H    K+G++S   V  +L+  Y
Sbjct: 680 FVRMNREGIDNNNFTFGSAVKA--ASETANMKQGKQVHAVITKTGYDSETEVCNALISMY 737

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG I  + + F ++ + N V + +I+N YS++G G EALD  + MI   + P+ VT +
Sbjct: 738 AKCGSISDAEKQFLEVSTKNEVSWNAIINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLV 797

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C+H G+V +G   F SM S YG+    +HY C++DML RAG+L +A+E +Q+ P 
Sbjct: 798 GVLSACSHIGLVDKGIAYFESMNSEYGLSPKPEHYVCVVDMLTRAGLLSRAKEFIQEMPI 857

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D ++W +LL +C VH N  IG   A+ L+ELEP D A Y  +SN Y+   +++     
Sbjct: 858 KPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVSKKWDARDLT 917

Query: 643 RETALARKLTRDIGHSLIEV-NSCH 666
           R+    + + ++ G S IEV NS H
Sbjct: 918 RQKMKEKGVKKEPGQSWIEVKNSIH 942



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/573 (26%), Positives = 287/573 (50%), Gaps = 21/573 (3%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L DS    NP +++YS N         G ++ A+++FD +  +D  ++  +ISG  K   
Sbjct: 218 LRDSTVVCNPLIDLYSRN---------GFVDLARRVFDGLRLKDHSSWVAMISGLSKNEC 268

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
             +A+ L+ +M   GI  +   FSSVLS C        G Q+H  VL LGF  + Y+ + 
Sbjct: 269 EAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNA 328

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV LY  +G  + A  +F  + +R+  T+N ++    +    ++ + ++ +M  +G+EP+
Sbjct: 329 LVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPD 388

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +   +V  CS    L  G+QLH++  KLG+   N  +  AL++ Y+ C  +  A   F
Sbjct: 389 SNTLASLVVACSADGTLFRGQQLHAYTTKLGFASNNK-IEGALLNLYAKCADIETALDYF 447

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
               V++V+ WN ++  Y   D + ++  +F +MQ+    P+  ++   L    R G++ 
Sbjct: 448 LETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLE 507

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G+QIH  + K  F   + +V S L DMY K   ++++  +     G+ +    +++   
Sbjct: 508 LGEQIHSQIIKTNFQLNA-YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGY 566

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSG 447
                   A+  F  M+D GI  DEV L+      +VSA A L + +    +H  A  SG
Sbjct: 567 TQYNFDDKALTTFRQMLDRGIRSDEVGLTN-----AVSACAGLQALKEGQQIHAQACVSG 621

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           F S++    +L+  YSRCG IE S+  FE+  + + + + ++++G+ ++G   EAL +  
Sbjct: 622 FSSDLPFQNALVTLYSRCGKIEESYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFV 681

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M + G+  +  TF   +   + +  +K+G+ V +++ +  G D++ +  + +I M  + 
Sbjct: 682 RMNREGIDNNNFTFGSAVKAASETANMKQGKQV-HAVITKTGYDSETEVCNALISMYAKC 740

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           G +  AE+   +     + + W++++ +   HG
Sbjct: 741 GSISDAEKQFLEVSTKNE-VSWNAIINAYSKHG 772



 Score =  222 bits (566), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 155/574 (27%), Positives = 278/574 (48%), Gaps = 8/574 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           S +  D ++  G L  A K+FDEMP R + T+N +I          +   L+  MVS  +
Sbjct: 123 SEKLFDFYLFKGDLYGAFKVFDEMPERTIFTWNKMIKELASRNLIGEVFGLFVRMVSENV 182

Query: 107 KESASTFSSVLSVCSNAGFYTEGI-QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
             +  TFS VL  C       + + QIH R+L  G   +  + +PL+DLY R G    A 
Sbjct: 183 TPNEGTFSGVLEACRGGSVAFDVVEQIHARILYQGLRDSTVVCNPLIDLYSRNGFVDLAR 242

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FD L  ++ ++W  M+    +     E +R++  M   G+ P   +F  ++  C    
Sbjct: 243 RVFDGLRLKDHSSWVAMISGLSKNECEAEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 302

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L+ G+QLH  V+KLG+   + +V NALV  Y   G+LI A+  F  +   D +++N+++
Sbjct: 303 SLEIGEQLHGLVLKLGF-SSDTYVCNALVSLYFHLGNLISAEHIFSNMSQRDAVTYNTLI 361

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           +  +       A+ELF RM L    P   +    +   S  G ++ G+Q+H Y TKLGF 
Sbjct: 362 NGLSQCGYGEKAMELFKRMHLDGLEPDSNTLASLVVACSADGTLFRGQQLHAYTTKLGFA 421

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
             +  ++ AL ++Y KC  IE+++  F      ++   N ++ +     +++++  +F  
Sbjct: 422 SNN-KIEGALLNLYAKCADIETALDYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 480

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  E I  ++ T  + LK         LG    +H   IK+ F+ N  V   L+D Y++ 
Sbjct: 481 MQIEEIVPNQYTYPSILKTCIRLGDLELG--EQIHSQIIKTNFQLNAYVCSVLIDMYAKL 538

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ +  +  +    +VV +T+++ GY++     +AL     M+ RG+  D+V     +
Sbjct: 539 GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 598

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C     +KEGQ + ++   V G  +D    + ++ +  R G ++++    +QT   GD
Sbjct: 599 SACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSRCGKIEESYLAFEQTE-AGD 656

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
            + W++L+   +  GN     RV  + M  E +D
Sbjct: 657 NIAWNALVSGFQQSGNNEEALRVF-VRMNREGID 689



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 143/538 (26%), Positives = 260/538 (48%), Gaps = 26/538 (4%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLY------------DEMVSHGIKESASTFSSVLSVC 120
           R + T  +  + CG  R    A+ +Y            D + + GI+ +  T   +L  C
Sbjct: 35  RKLKTRTVFPTLCGTRRASFAAISVYISEDESFQEKRIDSVENRGIRPNHQTLKWLLEGC 94

Query: 121 -SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
               G   EG ++H ++L LG   N  +   L D Y+  G    A  +FDE+PER + TW
Sbjct: 95  LKTNGSLDEGRKLHSQILKLGLDSNGCLSEKLFDFYLFKGDLYGAFKVFDEMPERTIFTW 154

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG-MLLDEGKQLHSHVI 238
           N M++     +   EV  ++ +M +E V PN  +F  ++  C  G +  D  +Q+H+ ++
Sbjct: 155 NKMIKELASRNLIGEVFGLFVRMVSENVTPNEGTFSGVLEACRGGSVAFDVVEQIHARIL 214

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
             G  D  + V N L+D YS  G +  A++ FD + + D  SW +++S  +  +   +A+
Sbjct: 215 YQGLRDSTV-VCNPLIDLYSRNGFVDLARRVFDGLRLKDHSSWVAMISGLSKNECEAEAI 273

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            LF  M +    P+  +F   L+   +  ++  G+Q+HG V KLGF     +V +AL  +
Sbjct: 274 RLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFS-SDTYVCNALVSL 332

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y     + S+  +F +   R     N+L+  L   G  + A+E+F  M  +G+  D  TL
Sbjct: 333 YFHLGNLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMHLDGLEPDSNTL 392

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           ++ +  ++ SA   L   + LH    K GF SN  +  +L++ Y++C  IE +   F + 
Sbjct: 393 ASLV--VACSADGTLFRGQQLHAYTTKLGFASNNKIEGALLNLYAKCADIETALDYFLET 450

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              NVV +  ++  Y      R +  +   M    ++P++ T+  +L  C   G ++ G+
Sbjct: 451 EVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGE 510

Query: 539 LVFNS-MKSVYGIDADRQHYSC--MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            + +  +K+ + ++A    Y C  +IDM  + G LD A ++L +   G D + W++++
Sbjct: 511 QIHSQIIKTNFQLNA----YVCSVLIDMYAKLGKLDTAWDILIRF-AGKDVVSWTTMI 563


>gi|328774763|gb|AEB39781.1| pentatricopeptide repeat protein 79 [Funaria hygrometrica]
          Length = 820

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 185/620 (29%), Positives = 331/620 (53%), Gaps = 4/620 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  N  +  +V  G +N A++LFD+   + +V++N++ISG       ++A  L+  M 
Sbjct: 78  NVYIINTLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQ 137

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++    TF S+LS CS+      G ++H RV+  G   N  +G+ L+ +Y + G   
Sbjct: 138 QEGLEPDKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNATVGNALISMYAKCGSVR 197

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD +  R+  +W  +  A+ E     E L+ Y+ M  EGV P+ +++  ++  C 
Sbjct: 198 DARRVFDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACG 257

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L++GKQ+H+ +++      ++ V+ AL   Y  CG++ +A++ F+ +P  DVI+WN
Sbjct: 258 SLAALEKGKQIHAQIVE-SEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWN 316

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++    D   + +A  +F RM      P   +++  L+  +R G +  GK+IH    K 
Sbjct: 317 TMIGGLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEIHARAVKD 376

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     V   +AL +MY K   ++ +  VF+  P R +    +L+      G + ++   
Sbjct: 377 GLV-SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTALVGGYADCGQVVESFST 435

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M+ +G+  +++T    LKA S   +   G  + +H   +K+G  +++AV+ +LM  Y
Sbjct: 436 FKKMLQQGVEANKITYMCVLKACSNPVALKWG--KEIHAEVVKAGIFADLAVANALMSMY 493

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG +E + +V E + + +VV + +++ G ++NG G EAL   EVM    + P+  TF+
Sbjct: 494 FKCGSVEDAIRVSEGMSTRDVVTWNTLIGGLAQNGRGLEALQKFEVMKSEEMRPNATTFV 553

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            V++ C    +V+EG+  F SM+  YGI    +HY+CM+D+L RAG L +AE+++   P 
Sbjct: 554 NVMSACRVRNLVEEGRRQFASMRKDYGIVPTEKHYACMVDILARAGHLGEAEDVILTMPF 613

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                MW +LL +CR HGN  IG + A   ++LEP +   Y  +S  Y+  G +    ++
Sbjct: 614 KPSAAMWGALLAACRAHGNVEIGEQAAEQCLKLEPQNAGTYVSLSFIYAAAGMWRDVAKL 673

Query: 643 RETALARKLTRDIGHSLIEV 662
           R+    R + ++ G S IEV
Sbjct: 674 RKLMKERGVKKEPGRSWIEV 693



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 135/481 (28%), Positives = 251/481 (52%), Gaps = 6/481 (1%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +  +L  C  A     G Q+H  +L  G   N+YI + L+ LY+  G    A  LFD+  
Sbjct: 47  YVKLLQSCVKAKDLAVGKQVHEHILRFGMKPNVYIINTLLKLYVHCGSVNEARRLFDKFS 106

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            +++ +WN+M+  +       E   ++  M+ EG+EP+  +F  ++  CS    L+ G++
Sbjct: 107 NKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEPDKFTFVSILSACSSPAALNWGRE 166

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  V++ G  + N  V NAL+  Y+ CGS+ +A++ FD +   D +SW ++   YA+  
Sbjct: 167 VHVRVMEAGLAN-NATVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 225

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              ++L+ +  M     RPS  +++  L+       +  GKQIH  + +    H  V V 
Sbjct: 226 YAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAALEKGKQIHAQIVE-SEHHSDVRVS 284

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +ALT MY KC  ++ +  VFE  P R +   N+++  L+ SG +++A  MF  M+ E + 
Sbjct: 285 TALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIGGLVDSGQLEEAHGMFHRMLKECVA 344

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D VT    L A   +    L   + +H  A+K G  S++    +L++ YS+ G ++ + 
Sbjct: 345 PDRVTYLAILSA--CARPGGLACGKEIHARAVKDGLVSDVRFGNALINMYSKAGSMKDAR 402

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           QVF+++P  +VV +T+++ GY+  G   E+    + M+Q+G+  +K+T++CVL  C++  
Sbjct: 403 QVFDRMPKRDVVSWTALVGGYADCGQVVESFSTFKKMLQQGVEANKITYMCVLKACSNPV 462

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +K G+ +   +    GI AD    + ++ M  + G ++ A   + +     D + W++L
Sbjct: 463 ALKWGKEIHAEVVKA-GIFADLAVANALMSMYFKCGSVEDAIR-VSEGMSTRDVVTWNTL 520

Query: 593 L 593
           +
Sbjct: 521 I 521



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 106/402 (26%), Positives = 208/402 (51%), Gaps = 9/402 (2%)

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
           P +VL+  ++   +G + +   +  +++ C     L  GKQ+H H+++ G +  N+++ N
Sbjct: 28  PADVLQYLHQ---KGSQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRFG-MKPNVYIIN 83

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
            L+  Y  CGS+ EA++ FD      V+SWN ++S YA   L  +A  LF  MQ     P
Sbjct: 84  TLLKLYVHCGSVNEARRLFDKFSNKSVVSWNVMISGYAHRGLGQEAFNLFTLMQQEGLEP 143

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              +FV  L+  S    + +G+++H  V + G  + +  V +AL  MY KC  +  +  V
Sbjct: 144 DKFTFVSILSACSSPAALNWGREVHVRVMEAGLANNAT-VGNALISMYAKCGSVRDARRV 202

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F++   R      +L  +   SG  +++++ +  M+ EG+    +T    L A    A+ 
Sbjct: 203 FDAMASRDEVSWTTLTGAYAESGYAQESLKTYHAMLQEGVRPSRITYMNVLSACGSLAAL 262

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
             G  + +H   ++S   S++ VS +L   Y +CG ++ + +VFE +P+ +V+ + +++ 
Sbjct: 263 EKG--KQIHAQIVESEHHSDVRVSTALTKMYIKCGAVKDAREVFECLPNRDVIAWNTMIG 320

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G   +G   EA  M   M++  + PD+VT+L +L+ C   G +  G+ + ++     G+ 
Sbjct: 321 GLVDSGQLEEAHGMFHRMLKECVAPDRVTYLAILSACARPGGLACGKEI-HARAVKDGLV 379

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +D +  + +I+M  +AG +  A ++  + P   D + W++L+
Sbjct: 380 SDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTALV 420


>gi|449433131|ref|XP_004134351.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 895

 Score =  335 bits (860), Expect = 4e-89,   Method: Compositional matrix adjust.
 Identities = 198/664 (29%), Positives = 352/664 (53%), Gaps = 7/664 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M   KL P   T  ++  +C  I+ L    ++  +  +   + ++Y  N  ID + +   
Sbjct: 112 MREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVD 171

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L++A+ +F+EM  RD V++N LISG       + AL +Y +    G+     T SSVL  
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C +     EG+ +H  +  +G   ++ IG+ L+ +Y +      A  +F ++  ++  TW
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTW 291

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + +L R +  ++++  M  +G  P+ LS    +R C     L  GK +H ++I 
Sbjct: 292 NTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIG 350

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ + +    N L+D Y+ CG L+ A++ FD     D ++WNS+++ Y       + LE
Sbjct: 351 SGF-ECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLE 409

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F  M++ RK  S+ +FV  L+  S+  ++  G+ IH  V K GF+   + + ++L D+Y
Sbjct: 410 SFKMMKMERKPDSV-TFVLLLSIFSQLADINQGRGIHCDVIKFGFE-AELIIGNSLLDVY 467

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  ++  + VF       +   N+++ S +H  +     +M   M  EG+  DE T+ 
Sbjct: 468 AKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVL 527

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L   S+ A    G  + +H    KSGFESN+ +  +L++ YS+CG +E   +VF+ + 
Sbjct: 528 GILPMCSLLAVRRQG--KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMK 585

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +VV +T++++ +   G G++AL   + M   G++PD V F+  +  C+HSGMVKEG  
Sbjct: 586 EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLR 645

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F+ MK+ Y ++   +HY+C++D+L R+G+L +AEE +   P   D  +W +LL +CR  
Sbjct: 646 FFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRAR 705

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
           GN  I +RV+  ++EL   D   Y  VSN Y+ +G+++    +R +   + L ++ G S 
Sbjct: 706 GNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSW 765

Query: 660 IEVN 663
           IE+ 
Sbjct: 766 IEIQ 769



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 154/619 (24%), Positives = 289/619 (46%), Gaps = 38/619 (6%)

Query: 3   STKLLPRVRTITTLAPTC-TSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
           S K  P++RT+ +L  T   S+  + S  L+  Y Q    ++  S  R+I          
Sbjct: 31  SAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSIS--------- 81

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
                    P  ++  +N +I          QAL  Y EM    ++  A TF SV++ C+
Sbjct: 82  ---------PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCA 132

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
                  G  +H   + +GF  +LYIG+ L+D+Y R      A  +F+E+  R+  +WN 
Sbjct: 133 RILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNS 192

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++  +C     ++ L MY+K +  G+ P+  +   ++  C   M + EG  +H  + K+G
Sbjct: 193 LISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIG 252

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  ++ + N L+  Y     L EA++ F  + V D ++WN+++  YA       +++LF
Sbjct: 253 -IAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF 311

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             M +    P + S    +    ++G++  GK +H Y+   GF+  +V   + L DMY K
Sbjct: 312 MDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVAC-NILIDMYAK 369

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  + ++  VF++   +     NSL+     SG  K+ +E F  M  E    D VT    
Sbjct: 370 CGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLL 428

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L   S  A  N G  R +HC  IK GFE+ + +  SL+D Y++CG ++   +VF  + + 
Sbjct: 429 LSIFSQLADINQG--RGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAH 486

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ--- 538
           +++ + +++              M+  M   GL+PD+ T L +L  C+   + ++G+   
Sbjct: 487 DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIH 546

Query: 539 -LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
             +F S     G +++    + +I+M  + G L+   ++ +      D + W++L+ +  
Sbjct: 547 GYIFKS-----GFESNVPIGNALIEMYSKCGSLENCIKVFKYMK-EKDVVTWTALISAFG 600

Query: 598 VHGNEIIGRRVANILMELE 616
           ++G    G++      ++E
Sbjct: 601 MYGE---GKKALKAFQDME 616


>gi|449480326|ref|XP_004155862.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g03580-like [Cucumis sativus]
          Length = 939

 Score =  335 bits (859), Expect = 5e-89,   Method: Compositional matrix adjust.
 Identities = 198/664 (29%), Positives = 352/664 (53%), Gaps = 7/664 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M   KL P   T  ++  +C  I+ L    ++  +  +   + ++Y  N  ID + +   
Sbjct: 112 MREKKLQPDAFTFPSVINSCARILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVD 171

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L++A+ +F+EM  RD V++N LISG       + AL +Y +    G+     T SSVL  
Sbjct: 172 LDNARYVFEEMSNRDSVSWNSLISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLA 231

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C +     EG+ +H  +  +G   ++ IG+ L+ +Y +      A  +F ++  ++  TW
Sbjct: 232 CGSLMAVKEGVAVHGVIEKIGIAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTW 291

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + +L R +  ++++  M  +G  P+ LS    +R C     L  GK +H ++I 
Sbjct: 292 NTMICGYAQLGRHEASVKLFMDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIG 350

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ + +    N L+D Y+ CG L+ A++ FD     D ++WNS+++ Y       + LE
Sbjct: 351 SGF-ECDTVACNILIDMYAKCGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLE 409

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F  M++ RK  S+ +FV  L+  S+  ++  G+ IH  V K GF+   + + ++L D+Y
Sbjct: 410 SFKMMKMERKPDSV-TFVLLLSIFSQLADINQGRGIHCDVIKFGFE-AELIIGNSLLDVY 467

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  ++  + VF       +   N+++ S +H  +     +M   M  EG+  DE T+ 
Sbjct: 468 AKCGEMDDLLKVFSYMSAHDIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVL 527

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L   S+ A    G  + +H    KSGFESN+ +  +L++ YS+CG +E   +VF+ + 
Sbjct: 528 GILPMCSLLAVRRQG--KEIHGYIFKSGFESNVPIGNALIEMYSKCGSLENCIKVFKYMK 585

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +VV +T++++ +   G G++AL   + M   G++PD V F+  +  C+HSGMVKEG  
Sbjct: 586 EKDVVTWTALISAFGMYGEGKKALKAFQDMELSGVLPDSVAFIAFIFACSHSGMVKEGLR 645

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F+ MK+ Y ++   +HY+C++D+L R+G+L +AEE +   P   D  +W +LL +CR  
Sbjct: 646 FFDRMKTDYNLEPRMEHYACVVDLLARSGLLAQAEEFILSMPMKPDASLWGALLSACRAR 705

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
           GN  I +RV+  ++EL   D   Y  VSN Y+ +G+++    +R +   + L ++ G S 
Sbjct: 706 GNTNIAQRVSKKILELNSDDTGYYVLVSNIYATLGKWDQVKTVRNSMKTKGLKKEPGSSW 765

Query: 660 IEVN 663
           IE+ 
Sbjct: 766 IEIQ 769



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 154/619 (24%), Positives = 289/619 (46%), Gaps = 38/619 (6%)

Query: 3   STKLLPRVRTITTLAPTC-TSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
           S K  P++RT+ +L  T   S+  + S  L+  Y Q    ++  S  R+I          
Sbjct: 31  SAKNTPQLRTVHSLIITSGLSLSVIFSGKLISKYAQVKDPISSVSVFRSIS--------- 81

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
                    P  ++  +N +I          QAL  Y EM    ++  A TF SV++ C+
Sbjct: 82  ---------PTNNVYLWNSIIRALTHNGLFTQALGYYTEMREKKLQPDAFTFPSVINSCA 132

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
                  G  +H   + +GF  +LYIG+ L+D+Y R      A  +F+E+  R+  +WN 
Sbjct: 133 RILDLELGCIVHEHAMEMGFESDLYIGNALIDMYSRFVDLDNARYVFEEMSNRDSVSWNS 192

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++  +C     ++ L MY+K +  G+ P+  +   ++  C   M + EG  +H  + K+G
Sbjct: 193 LISGYCSNGFWEDALDMYHKFRMTGMVPDCFTMSSVLLACGSLMAVKEGVAVHGVIEKIG 252

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  ++ + N L+  Y     L EA++ F  + V D ++WN+++  YA       +++LF
Sbjct: 253 -IAGDVIIGNGLLSMYFKFERLREARRVFSKMAVKDSVTWNTMICGYAQLGRHEASVKLF 311

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             M +    P + S    +    ++G++  GK +H Y+   GF+  +V   + L DMY K
Sbjct: 312 MDM-IDGFVPDMLSITSTIRACGQSGDLQVGKFVHKYLIGSGFECDTVAC-NILIDMYAK 369

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  + ++  VF++   +     NSL+     SG  K+ +E F  M  E    D VT    
Sbjct: 370 CGDLLAAQEVFDTTKCKDSVTWNSLINGYTQSGYYKEGLESFKMMKMER-KPDSVTFVLL 428

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L   S  A  N G  R +HC  IK GFE+ + +  SL+D Y++CG ++   +VF  + + 
Sbjct: 429 LSIFSQLADINQG--RGIHCDVIKFGFEAELIIGNSLLDVYAKCGEMDDLLKVFSYMSAH 486

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ--- 538
           +++ + +++              M+  M   GL+PD+ T L +L  C+   + ++G+   
Sbjct: 487 DIISWNTVIASSVHFDDCTVGFQMINEMRTEGLMPDEATVLGILPMCSLLAVRRQGKEIH 546

Query: 539 -LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
             +F S     G +++    + +I+M  + G L+   ++ +      D + W++L+ +  
Sbjct: 547 GYIFKS-----GFESNVPIGNALIEMYSKCGSLENCIKVFKYMK-EKDVVTWTALISAFG 600

Query: 598 VHGNEIIGRRVANILMELE 616
           ++G    G++      ++E
Sbjct: 601 MYGE---GKKALKAFQDME 616


>gi|297842209|ref|XP_002888986.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297334827|gb|EFH65245.1| hypothetical protein ARALYDRAFT_476599 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 717

 Score =  335 bits (858), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 195/652 (29%), Positives = 348/652 (53%), Gaps = 18/652 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P   T +++   C S+  L    ++ +        +++     +D + K GH+  A+++F
Sbjct: 71  PDSYTYSSVLAACASLEELRFGKVVQARVIKCGAEDVFVCTSIVDLYAKCGHMAEAREVF 130

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
             +    +V++ +++SG  K      AL ++ EM   G++ ++ T +SV+S C       
Sbjct: 131 SRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVC 190

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP---SVRALDLFDELPERNLATWNLMLR 184
           E  Q+H  V   GF L+  + + L+ +  + G    S R  +  D++  +N+   N+M+ 
Sbjct: 191 EASQVHAWVFKSGFYLDTSVAAALISMNSKSGDINLSERVFEDLDDIRRQNIV--NVMVT 248

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           +F +  +P + +R++ +M  EG+ P+  S C ++   S+   L+ GKQ+HS+ +K G + 
Sbjct: 249 SFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLL---SVLDCLNLGKQVHSYTLKSGLI- 304

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           +++ V ++L   YS CGSL E+   F  IP  D   W S++S + +Y  + +A+ LF  M
Sbjct: 305 LDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIGLFSEM 364

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P   +    L   S   ++   K+IHGY  + G D G + + SAL + Y KC  
Sbjct: 365 LDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRAGIDRG-MPLGSALVNTYSKCGS 423

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++ +  V++  P      C+SL++     G ++D   +F  MV  G  +D   +S+ LKA
Sbjct: 424 LKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAISSILKA 483

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
             +S  + LG+   +H    K G  +  +V  SL+  YS+ G IE   + F +I  P+++
Sbjct: 484 AVLSEESELGA--QVHAYITKIGLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQINGPDLI 541

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T+++  Y+++G   EAL +  +M ++G  PDKVTF+ VL+ C+H G+V+EG    NSM
Sbjct: 542 AWTALIASYAQHGKANEALQVYCLMKEKGFKPDKVTFVGVLSACSHGGLVEEGYFHLNSM 601

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
              YGI+ + +HY CM+D LGR+G L +AE  +   P   D ++W +LL +C+++G+  +
Sbjct: 602 VKDYGIEPENRHYVCMVDALGRSGRLREAENFINTRPIKPDALVWGTLLAACKIYGDVEL 661

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           G+  A   +ELEP D   Y  +SN  +E+GE++   ++ ET   RKL +  G
Sbjct: 662 GKLAAKKAIELEPSDAGAYVSLSNILAEVGEWD---EVEET---RKLMKGTG 707



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 137/560 (24%), Positives = 273/560 (48%), Gaps = 27/560 (4%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID F K+     A K+F +  + ++  +N +I+G  + ++      L+ EM +   K  +
Sbjct: 14  IDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDLFHEMCNGFQKPDS 73

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T+SSVL+ C++      G  +  RV+  G   ++++ + +VDLY + G    A ++F  
Sbjct: 74  YTYSSVLAACASLEELRFGKVVQARVIKCG-AEDVFVCTSIVDLYAKCGHMAEAREVFSR 132

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +   ++ +W +ML  + + +     L ++ +M+  GVE N  +   ++  C    ++ E 
Sbjct: 133 ISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTSVISACGRPSMVCEA 192

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI---VSI 287
            Q+H+ V K G+  ++  VA AL+   S  G +  +++ F+   +DD+   N +   V+ 
Sbjct: 193 SQVHAWVFKSGFY-LDTSVAAALISMNSKSGDINLSERVFE--DLDDIRRQNIVNVMVTS 249

Query: 288 YADYDLIFDALELFFRMQLCRKRP------SIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++       A+ LF RM      P      S+ S ++ LN          GKQ+H Y  K
Sbjct: 250 FSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDCLN---------LGKQVHSYTLK 300

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G     + V S+L  MY KC  +E S ++F+  P +   C  S+++     G +++A+ 
Sbjct: 301 SGLIL-DLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYGYLREAIG 359

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M+DEG   DE TL+  L     S+  +L   + +H   +++G +  + +  +L++ 
Sbjct: 360 LFSEMLDEGTSPDESTLAAVLTV--CSSLPSLPRSKEIHGYTLRAGIDRGMPLGSALVNT 417

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+CG ++L+ +V++++P  + V  +S+++GYS++G+ ++   +   M+  G   D    
Sbjct: 418 YSKCGSLKLARKVYDRLPEMDPVSCSSLISGYSQHGLVQDGFLLFRDMVMSGFSMDSYAI 477

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
             +L     S   + G  V   +  + G+  +    S ++ M  + G ++   +   Q  
Sbjct: 478 SSILKAAVLSEESELGAQVHAYITKI-GLCTEPSVGSSLLTMYSKFGSIEDCCKAFSQI- 535

Query: 582 GGGDCMMWSSLLRSCRVHGN 601
            G D + W++L+ S   HG 
Sbjct: 536 NGPDLIAWTALIASYAQHGK 555



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 123/464 (26%), Positives = 217/464 (46%), Gaps = 13/464 (2%)

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
           +G+     + S L+D + +      A  +F +    N+  WN ++           V  +
Sbjct: 1   MGYFFYEVVQSSLIDAFSKNLRFEDAYKVFRDTLSANVYCWNTIIAGALRNQNYGAVFDL 60

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           +++M     +P+  ++  ++  C+    L  GK + + VIK G  DV  FV  ++VD Y+
Sbjct: 61  FHEMCNGFQKPDSYTYSSVLAACASLEELRFGKVVQARVIKCGAEDV--FVCTSIVDLYA 118

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            CG + EA++ F  I    V+SW  ++S Y   +  F ALE+F  M+      +  +   
Sbjct: 119 KCGHMAEAREVFSRISNPSVVSWTVMLSGYTKSNDAFSALEIFREMRHSGVEINSCTVTS 178

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG- 377
            ++   R   V    Q+H +V K GF +    V +AL  M  K   I  S  VFE     
Sbjct: 179 VISACGRPSMVCEASQVHAWVFKSGF-YLDTSVAAALISMNSKSGDINLSERVFEDLDDI 237

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           R     N ++TS   +     A+ +F  M+ EG+  DE ++ + L  L      NLG  +
Sbjct: 238 RRQNIVNVMVTSFSQNKKPGKAIRLFTRMLQEGLNPDEFSVCSLLSVLDC---LNLG--K 292

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H   +KSG   ++ V  SL   YS+CG +E S+ +F++IP  +  C+ S+++G++  G
Sbjct: 293 QVHSYTLKSGLILDLTVGSSLFTMYSKCGSLEESYSLFQEIPFKDNACWASMISGFNEYG 352

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSMKSVYGIDADRQH 556
             REA+ +   M+  G  PD+ T   VL  C+    + +  ++   ++++  GID     
Sbjct: 353 YLREAIGLFSEMLDEGTSPDESTLAAVLTVCSSLPSLPRSKEIHGYTLRA--GIDRGMPL 410

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            S +++   + G L  A ++  + P   D +  SSL+     HG
Sbjct: 411 GSALVNTYSKCGSLKLARKVYDRLP-EMDPVSCSSLISGYSQHG 453


>gi|224075493|ref|XP_002304652.1| predicted protein [Populus trichocarpa]
 gi|222842084|gb|EEE79631.1| predicted protein [Populus trichocarpa]
          Length = 820

 Score =  335 bits (858), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 189/620 (30%), Positives = 350/620 (56%), Gaps = 4/620 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++++N  ++ +VK   L  A KLFDEMP R+ V++  LI G  +     +A+ L+  +
Sbjct: 77  LDLFANNILLNFYVKYDSLPDAAKLFDEMPDRNTVSFVTLIQGYSQCLRFSEAIGLFSRL 136

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G + +   FS+VL +  +A +   G  +H  V  LGF  + ++G+ L+D Y   G +
Sbjct: 137 QGEGHELNPFVFSTVLKLLVSAEWAKLGFSVHACVYKLGFDSDAFVGTALIDCYSVCGYA 196

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD +  +++ +W  M+  + E    +E L+++++M+  G +PN  +F  +++ C
Sbjct: 197 ECARQVFDAIEYKDMVSWTGMVACYVENECFEESLKLFSRMRIVGFKPNNFTFASVLKAC 256

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               + + GK +H    K  +++  +FV   L+D Y   G + +A + F+ +P DDVI W
Sbjct: 257 VGLEVFNVGKAVHGCAFKTSYLE-ELFVGVELIDLYIKSGDVDDALQVFEEMPKDDVIPW 315

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           + +++ YA  +   +A+E+F RM+     P+  +    L   +   ++  G QIH +V K
Sbjct: 316 SFMIARYAQSEQSEEAIEMFCRMRRGLVLPNQFTLASLLQACASLVDLQLGNQIHCHVVK 375

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           +G D  +V V +AL DMY KC  +E+S+ +F  +P  +    N+++   + +GN + A+ 
Sbjct: 376 VGLDM-NVFVSNALMDMYAKCGRMENSLQLFSESPNCTDVSWNTVIVGYVQAGNGEKALI 434

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M++  +   EVT S+ L+A +  A+   GS   +H  ++K+ ++ N  V  +L+D 
Sbjct: 435 LFKDMLECQVQGTEVTYSSVLRACAGIAALEPGS--QIHSLSVKTIYDKNTVVGNALIDM 492

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG+I+ +  VF+ +   + V + ++++GYS +G+  EAL   E M++    PDKVTF
Sbjct: 493 YAKCGNIKDARLVFDMLREHDQVSWNAMISGYSVHGLYGEALKTFESMLETECKPDKVTF 552

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L+ C+++G++  GQ  F SM   Y I+   +HY+CM+ +LGR+G LDKA +L+ + P
Sbjct: 553 VGILSACSNAGLLDRGQAYFKSMVEEYDIEPCAEHYTCMVWLLGRSGHLDKAAKLVHEIP 612

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
                M+W +LL +C +H +  +GR  A  ++E+EP D A +  +SN Y+    +     
Sbjct: 613 FEPSVMVWRALLSACVIHNDVELGRISAQRVLEIEPEDEATHVLLSNIYANARRWGNVAS 672

Query: 642 IRETALARKLTRDIGHSLIE 661
           IR +   + + ++ G S IE
Sbjct: 673 IRTSMKRKGIRKEPGLSWIE 692



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 133/489 (27%), Positives = 250/489 (51%), Gaps = 8/489 (1%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           + S+L  C   G    G  +HC ++  G  L+L+  + L++ Y++      A  LFDE+P
Sbjct: 47  YGSLLQSCIRNGDCATGKYLHCEIIKKGNCLDLFANNILLNFYVKYDSLPDAAKLFDEMP 106

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +RN  ++  +++ + +  R  E + ++++++ EG E N   F  +++          G  
Sbjct: 107 DRNTVSFVTLIQGYSQCLRFSEAIGLFSRLQGEGHELNPFVFSTVLKLLVSAEWAKLGFS 166

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H+ V KLG+ D + FV  AL+D YS CG    A++ FD I   D++SW  +V+ Y + +
Sbjct: 167 VHACVYKLGF-DSDAFVGTALIDCYSVCGYAECARQVFDAIEYKDMVSWTGMVACYVENE 225

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              ++L+LF RM++   +P+  +F   L           GK +HG   K  +    + V 
Sbjct: 226 CFEESLKLFSRMRIVGFKPNNFTFASVLKACVGLEVFNVGKAVHGCAFKTSYLE-ELFVG 284

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
             L D+Y K   ++ ++ VFE  P   +   + ++     S   ++A+EMF  M    + 
Sbjct: 285 VELIDLYIKSGDVDDALQVFEEMPKDDVIPWSFMIARYAQSEQSEEAIEMFCRMRRGLVL 344

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            ++ TL++ L+A +      LG+   +HC  +K G + N+ VS +LMD Y++CG +E S 
Sbjct: 345 PNQFTLASLLQACASLVDLQLGN--QIHCHVVKVGLDMNVFVSNALMDMYAKCGRMENSL 402

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           Q+F + P+   V + +++ GY + G G +AL + + M++  +   +VT+  VL  C    
Sbjct: 403 QLFSESPNCTDVSWNTVIVGYVQAGNGEKALILFKDMLECQVQGTEVTYSSVLRACAGIA 462

Query: 533 MVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
            ++ G  + + S+K++Y  D +    + +IDM  + G +  A  L+       D + W++
Sbjct: 463 ALEPGSQIHSLSVKTIY--DKNTVVGNALIDMYAKCGNIKDA-RLVFDMLREHDQVSWNA 519

Query: 592 LLRSCRVHG 600
           ++    VHG
Sbjct: 520 MISGYSVHG 528


>gi|414587348|tpg|DAA37919.1| TPA: hypothetical protein ZEAMMB73_411767 [Zea mays]
          Length = 920

 Score =  334 bits (857), Expect = 7e-89,   Method: Compositional matrix adjust.
 Identities = 205/670 (30%), Positives = 352/670 (52%), Gaps = 10/670 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL---NIYSSNRTIDDFVKS 57
           M  T ++P    ++++   CT     +   ++  + Q   Q      +  N  I  ++  
Sbjct: 135 MHWTAVIPTPYVLSSVLSACTKGKLFAQGRMI--HAQVYKQAFCSETFVGNALIALYLGF 192

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G    A+++F +M   D VT+N LISG  +  H + AL ++DEM   G++    T +S+L
Sbjct: 193 GSFKLAERVFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLL 252

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           + C++ G   +G Q+H  +L  G   +      L+DLY++ G    A D+F+     N+ 
Sbjct: 253 AACASVGDLQKGKQLHSYLLKAGMSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVV 312

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            WNLML A+ ++S   +   ++ +M+A G+ PN  ++  ++R C+    ++ G+Q+HS  
Sbjct: 313 LWNLMLVAYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLS 372

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           IK G+ + +++V+  L+D YS    L +A+K  + +   DV+SW S+++ Y  +D   +A
Sbjct: 373 IKNGF-ESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEA 431

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L  F  MQ C   P         +  +    +  G QIH  V   G+    + + + L +
Sbjct: 432 LATFKEMQDCGVWPDNIGLASAASACAGIKAMRQGLQIHARVYVSGYA-ADISIWNTLVN 490

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           +Y +C   E + ++F     +     N L++    S   + A+ +F  M   G   +  T
Sbjct: 491 LYARCGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFT 550

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
             + + AL+  A    G  + +H  A+K+G  S   V+ +L+  Y +CG IE +  +F +
Sbjct: 551 FISAISALANLADIKQG--KQVHGRAVKTGHTSETEVANALISLYGKCGSIEDAKMIFSE 608

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +   N V + +I+   S++G G EALD+ + M Q GL P+ VTF+ VLA C+H G+V+EG
Sbjct: 609 MSLRNEVSWNTIITSCSQHGRGLEALDLFDQMKQEGLKPNDVTFIGVLAACSHVGLVEEG 668

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
              F SM +VYG++    HY+C++D+LGRAG LD+A   + + P   + M+W +LL +C+
Sbjct: 669 LSYFKSMSNVYGLNPIPDHYACVVDILGRAGQLDRARRFVDEMPITANAMIWRTLLSACK 728

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           VH N  IG   A  L+ELEP D A Y  +SN Y+  G++    Q+R+    R + ++ G 
Sbjct: 729 VHKNIEIGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQVRKMMKDRGIRKEPGR 788

Query: 658 SLIEV-NSCH 666
           S IEV N+ H
Sbjct: 789 SWIEVKNAVH 798



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 131/556 (23%), Positives = 275/556 (49%), Gaps = 12/556 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K+G +  A+++F E+ +RD V++  ++SG  +    K+A  LY +M    + 
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI 141

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +    SSVLS C+    + +G  IH +V    F    ++G+ L+ LY+  G    A  +
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCSETFVGNALIALYLGFGSFKLAERV 201

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++   +  T+N ++    +    +  L+++++M+  G+ P+ ++   ++  C+    L
Sbjct: 202 FCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGDL 261

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +GKQLHS+++K G +  +     +L+D Y  CG +  A   F+     +V+ WN ++  
Sbjct: 262 QKGKQLHSYLLKAG-MSFDYITEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLVA 320

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y     +  + E+F +MQ     P+  ++   L   + TG +  G+QIH    K GF+  
Sbjct: 321 YGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELGEQIHSLSIKNGFE-S 379

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++V   L DMY K   ++ +  + E    R +    S++   +     ++A+  F  M 
Sbjct: 380 DMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKEMQ 439

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSR 464
           D G+  D + L++     + SA A + + R    +H     SG+ ++I++  +L++ Y+R
Sbjct: 440 DCGVWPDNIGLAS-----AASACAGIKAMRQGLQIHARVYVSGYAADISIWNTLVNLYAR 494

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG  E +  +F +I   + + +  +++G+ ++ +  +AL +   M Q G   +  TF+  
Sbjct: 495 CGRSEEAFSLFREIDHKDEITWNGLISGFGQSRLYEQALMVFMKMSQAGAKYNVFTFISA 554

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           ++   +   +K+G+ V        G  ++ +  + +I + G+ G ++ A+ +  +     
Sbjct: 555 ISALANLADIKQGKQVHGRAVKT-GHTSETEVANALISLYGKCGSIEDAKMIFSEMSLRN 613

Query: 585 DCMMWSSLLRSCRVHG 600
           + + W++++ SC  HG
Sbjct: 614 E-VSWNTIITSCSQHG 628



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 131/505 (25%), Positives = 243/505 (48%), Gaps = 7/505 (1%)

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG-FYTEGIQIHCRVLSLGFGLNLYIG 148
           +P++ L L     SH     ++  +  L  C   G  +   ++IH   +  G G +  IG
Sbjct: 22  NPEKILSLVAAKASHHRALGSADLTCALQACRGRGNRWPLVLEIHATSVVRGLGADRLIG 81

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + L+DLY + G   +A  +F EL  R+  +W  ML  + +     E  R+Y++M    V 
Sbjct: 82  NLLIDLYAKNGLVWQARQVFKELSSRDHVSWVAMLSGYAQRGLGKEAFRLYSQMHWTAVI 141

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P       ++  C+ G L  +G+ +H+ V K  +     FV NAL+  Y   GS   A++
Sbjct: 142 PTPYVLSSVLSACTKGKLFAQGRMIHAQVYKQAFCS-ETFVGNALIALYLGFGSFKLAER 200

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +   D +++N+++S +A       AL++F  MQL   RP   +    L   +  G+
Sbjct: 201 VFCDMLFCDRVTFNTLISGHAQCGHGECALQIFDEMQLSGLRPDCVTVASLLAACASVGD 260

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  GKQ+H Y+ K G     +  + +L D+Y KC  IE++  +F      ++   N ++ 
Sbjct: 261 LQKGKQLHSYLLKAGMSFDYI-TEGSLLDLYVKCGDIETAHDIFNLGDRTNVVLWNLMLV 319

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
           +     ++  + E+FG M   GI  ++ T    L+  + +    LG    +H  +IK+GF
Sbjct: 320 AYGQISDLAKSFEIFGQMQATGIHPNKFTYPCILRTCTCTGQIELG--EQIHSLSIKNGF 377

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           ES++ VS  L+D YS+   ++ + ++ E +   +VV +TS++ GY ++    EAL   + 
Sbjct: 378 ESDMYVSGVLIDMYSKYRCLDKARKILEMLEKRDVVSWTSMIAGYVQHDFCEEALATFKE 437

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M   G+ PD +      + C     +++G L  ++   V G  AD   ++ ++++  R G
Sbjct: 438 MQDCGVWPDNIGLASAASACAGIKAMRQG-LQIHARVYVSGYAADISIWNTLVNLYARCG 496

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLL 593
             ++A  L ++     D + W+ L+
Sbjct: 497 RSEEAFSLFREID-HKDEITWNGLI 520


>gi|297802056|ref|XP_002868912.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297314748|gb|EFH45171.1| hypothetical protein ARALYDRAFT_352947 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1057

 Score =  333 bits (855), Expect = 1e-88,   Method: Compositional matrix adjust.
 Identities = 191/627 (30%), Positives = 338/627 (53%), Gaps = 14/627 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y     ID ++K G+++ A+ +FD +P +  VT+  +ISGC K      +L L+ +++
Sbjct: 182 DVYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +       S+VLS CS   F   G QIH  +L  G   +  + + L+D Y++ G   
Sbjct: 242 EGNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDASLMNVLIDSYVKCGRVR 301

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD +P +N+ +W  +L  + + S   E + ++  M   G++P+  +   ++  C+
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ G Q+H++ IK   +  + +V N+L+D Y+ C  L EA+K FD    DDV+ +N
Sbjct: 362 SLHALEFGTQVHAYTIKAN-LGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFN 420

Query: 283 SIVSIYADYDL---IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +++  Y+       + DAL +F  M+    RPS+ +FV  L  ++   ++   KQIHG +
Sbjct: 421 AMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLM 480

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G +   +   SAL  +Y  C  ++ S  VF+    + L   NS+ +  +     ++A
Sbjct: 481 FKFGLNL-DIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEA 539

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSC 456
           + +F  +       DE T         V+A+ NL S +L    HC  +K G E N  ++ 
Sbjct: 540 LNLFLELQLSRDRPDEFTFVDM-----VTAAGNLASLQLGQEFHCQLLKRGLECNPYITN 594

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG  E +H+ F+   S +VVC+ S+++ Y+ +G GR+AL MLE M+  G+ P
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEP 654

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + +TF+ VL+ C+H+G+V++G   F  M   +GI+ + +HY CM+ +LGRAG L++A EL
Sbjct: 655 NYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNEAREL 713

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +++ P     ++W SLL  C   GN  +    A + +  +P D   ++ +SN Y+  G +
Sbjct: 714 IEKMPTKPAAIVWRSLLSGCAKAGNVELAEYAAEMAILSDPKDSGSFTLLSNIYASKGMW 773

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
             + ++RE      + ++ G S IE+N
Sbjct: 774 TDAKKVRERMKFEGVVKEPGRSWIEIN 800



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 152/585 (25%), Positives = 291/585 (49%), Gaps = 23/585 (3%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY-D 99
           +L+ Y SN  ++ + ++G +  A+K+F++MP R++VT++ ++S C      +++L ++ D
Sbjct: 76  ELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGFYEESLVVFLD 135

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEG----IQIHCRVLSLGFGLNLYIGSPLVDLY 155
              +     +    SS +  CS  G    G     Q+   ++   F  ++Y+G+ L+D Y
Sbjct: 136 FWRTRKNSPNEYILSSFIQACS--GLDGSGRWMVFQLQSFLVKSRFDRDVYVGTLLIDFY 193

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           ++ G    A  +FD LPE++  TW  M+    ++ R    L+++ ++    V P+G    
Sbjct: 194 LKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEGNVVPDGYILS 253

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  CSI   L+ GKQ+H+H+++ G  + +  + N L+D Y  CG +  A K FD +P 
Sbjct: 254 TVLSACSILPFLEGGKQIHAHILRYG-HEKDASLMNVLIDSYVKCGRVRAAHKLFDGMPN 312

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            ++ISW +++S Y    L  +A+ELF  M     +P + +    L   +    + FG Q+
Sbjct: 313 KNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCASLHALEFGTQV 372

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H Y  K    + S +V ++L DMY KC+ +  +  VF+      +   N+++      G 
Sbjct: 373 HAYTIKANLGNDS-YVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLFNAMIEGYSRLGT 431

Query: 396 ---IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESN 451
              + DA+ +F    D    L   +L T +  L  SAS  +LG  + +H    K G   +
Sbjct: 432 QWELHDALNIFH---DMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKFGLNLD 488

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM-LEVMI 510
           I    +L+  YS C  ++ S  VF+++   ++V + S+ +GY +     EAL++ LE+ +
Sbjct: 489 IFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLELQL 548

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
            R   PD+ TF+ ++    +   ++ GQ  F+      G++ +    + ++DM  + G  
Sbjct: 549 SRDR-PDEFTFVDMVTAAGNLASLQLGQ-EFHCQLLKRGLECNPYITNALLDMYAKCGSP 606

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           + A +    +    D + W+S++ S   HG    GR+   +L ++
Sbjct: 607 EDAHKAF-DSAASRDVVCWNSVISSYANHGE---GRKALQMLEKM 647



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 201/402 (50%), Gaps = 14/402 (3%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H +++  G  L+ Y+ + L++LY R G  V A  +F+++PERNL TW+ M+ A      
Sbjct: 66  VHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHGF 125

Query: 192 PDEVLRMY-NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK----QLHSHVIKLGWVDVN 246
            +E L ++ +  +     PN       ++ CS   L   G+    QL S ++K    D +
Sbjct: 126 YEESLVVFLDFWRTRKNSPNEYILSSFIQACS--GLDGSGRWMVFQLQSFLVK-SRFDRD 182

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           ++V   L+DFY   G++  A+  FD +P    ++W +++S        + +L+LF+++  
Sbjct: 183 VYVGTLLIDFYLKEGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
               P        L+  S    +  GKQIH ++ + G +  +  + + L D Y KC  + 
Sbjct: 243 GNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGHEKDA-SLMNVLIDSYVKCGRVR 301

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           ++  +F+  P +++    +L++    +   K+A+E+F  M   G+  D    S+ L + +
Sbjct: 302 AAHKLFDGMPNKNIISWTTLLSGYKQNSLHKEAMELFTSMPKFGLKPDMFACSSILTSCA 361

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
              +   G+   +H   IK+   ++  V+ SL+D Y++C  +  + +VF+   + +VV F
Sbjct: 362 SLHALEFGT--QVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTEARKVFDIFAADDVVLF 419

Query: 487 TSIMNGYSRNGMGRE---ALDMLEVMIQRGLIPDKVTFLCVL 525
            +++ GYSR G   E   AL++   M  R + P  +TF+ +L
Sbjct: 420 NAMIEGYSRLGTQWELHDALNIFHDMRFRLIRPSLLTFVSLL 461



 Score = 99.4 bits (246), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 63/246 (25%), Positives = 120/246 (48%), Gaps = 2/246 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+I++ +  I  +     L  ++ +FDEM  +D+V +N + SG  +    ++AL L+ E+
Sbjct: 487 LDIFAGSALIAVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFSGYVQQSENEEALNLFLEL 546

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
                +    TF  +++   N      G + HC++L  G   N YI + L+D+Y + G  
Sbjct: 547 QLSRDRPDEFTFVDMVTAAGNLASLQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   FD    R++  WN ++ ++       + L+M  KM  EG+EPN ++F  ++  C
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGRKALQMLEKMMCEGIEPNYITFVGVLSAC 666

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD-VIS 280
           S   L+++G +    +++ G ++        +V      G L EA++  + +P     I 
Sbjct: 667 SHAGLVEDGLKQFELMLRFG-IEPETEHYVCMVSLLGRAGRLNEARELIEKMPTKPAAIV 725

Query: 281 WNSIVS 286
           W S++S
Sbjct: 726 WRSLLS 731



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/181 (25%), Positives = 87/181 (48%), Gaps = 7/181 (3%)

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           ++H   I SG E +  +S  LM+ YSR G +  + +VFEK+P  N+V ++++++  + +G
Sbjct: 65  VVHGQIIVSGLELDTYLSNILMNLYSRAGGMVYARKVFEKMPERNLVTWSTMVSACNHHG 124

Query: 498 MGREALDM-LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ-LVFNSMKSVYGIDADRQ 555
              E+L + L+    R   P++      +  C  SG+   G+ +VF     +     DR 
Sbjct: 125 FYEESLVVFLDFWRTRKNSPNEYILSSFIQAC--SGLDGSGRWMVFQLQSFLVKSRFDRD 182

Query: 556 HY--SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
            Y  + +ID   + G +D A  +    P     + W++++  C   G   +  ++   LM
Sbjct: 183 VYVGTLLIDFYLKEGNIDYARLVFDALP-EKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 614 E 614
           E
Sbjct: 242 E 242


>gi|296084942|emb|CBI28351.3| unnamed protein product [Vitis vinifera]
          Length = 770

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 186/604 (30%), Positives = 346/604 (57%), Gaps = 5/604 (0%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           +++LFDE P + +   N L+    +    K+AL L+  +   G     S+ S VL VC  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G Q+HC+ +  GF  ++ +G+ LVD+YM+         +FDE+  +N+ +W  +
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           L  + +    ++ L+++++M+ EG++PN  +F  ++ G +    +++G Q+H+ VIK G 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG- 223

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           +D  IFV N++V+ YS    + +AK  FD +   + +SWNS+++ +    L  +A ELF+
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           RM+L   + +   F   +   +    + F KQ+H  V K G D   +++++AL   Y KC
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF-DLNIKTALMVAYSKC 342

Query: 363 NVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMV-DEGIGLDEVTLST 420
           + I+ +  +F    G +++    ++++  + +G    A+ +F  M  +EG+  +E T S+
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREEGVEPNEFTFSS 402

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L A + + +A++   +  H C+IKSGF + + VS +L+  Y++ G+IE +++VF++   
Sbjct: 403 VLNACA-APTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQVD 461

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            ++V + S+++GY+++G G+++L + E M  + L  D +TF+ V++ C H+G+V EGQ  
Sbjct: 462 RDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISACTHAGLVNEGQRY 521

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F+ M   Y I    +HYSCM+D+  RAG+L+KA +L+ + P      +W +LL +CRVH 
Sbjct: 522 FDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATIWRTLLAACRVHL 581

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           N  +G   A  L+ L+P D A Y  +SN Y+  G ++   ++R+    +K+ ++ G+S I
Sbjct: 582 NVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDMKKVKKEAGYSWI 641

Query: 661 EVNS 664
           EV +
Sbjct: 642 EVKN 645


>gi|147854092|emb|CAN83391.1| hypothetical protein VITISV_041405 [Vitis vinifera]
          Length = 886

 Score =  333 bits (854), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 200/628 (31%), Positives = 345/628 (54%), Gaps = 13/628 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYD 99
           Q NI      I+ +       SAK +F  +    D+  +N L++ C K     + L ++ 
Sbjct: 227 QNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFH 286

Query: 100 EMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            ++    +K  A T+ SVL  CS  G    G  +H  V+  GF +++ + S  V +Y + 
Sbjct: 287 RLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKC 346

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A+ LFDE+PER++A+WN ++  + +  +P++ L ++ +MK  G +P+ ++   ++
Sbjct: 347 NVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVI 406

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+  + L+ GK++H  +++ G+  ++ FV++ALVD Y  CG L  AK+ F+ I   +V
Sbjct: 407 SSCARLLDLERGKEIHMELVRSGFA-LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 465

Query: 279 ISWNSIVSIYADYDLIFDA---LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           +SWNS++   A Y L  D+   +ELF RM     RP++ +    L   SR+ N+  GK I
Sbjct: 466 VSWNSMI---AGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFI 522

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HGY+ +   +   + V S+L D+Y KC  I S+  VF++ P  ++   N +++  +  G+
Sbjct: 523 HGYIIRNRVE-ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGS 581

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             +A+ +F  M   G+  D +T ++ L A S  A    G  + +H   I+S  E N  V 
Sbjct: 582 YLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG--KEIHNFIIESKLEINEVVM 639

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +L+D Y++CG ++ +  +F ++P  + V +TS++  Y  +G   EAL + E M Q    
Sbjct: 640 GALLDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAK 699

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PDKVTFL +L+ C+H+G+V EG   FN M + YG     +HYSC+ID+LGR G L +A E
Sbjct: 700 PDKVTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYE 759

Query: 576 LLQQTPG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           +LQ+TP    D  + S+L  +C +H    +G ++  +L+E +P D + Y  +SN Y+ + 
Sbjct: 760 ILQRTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVK 819

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEV 662
           +++   ++R       L ++ G S IEV
Sbjct: 820 KWDEVRKVRLKIKELGLKKNPGCSWIEV 847



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 138/475 (29%), Positives = 249/475 (52%), Gaps = 8/475 (1%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRAFC 187
           G  IH +++SLG   N+ +   L++LY        A  +F  +    ++  WN ++ A  
Sbjct: 214 GKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACT 273

Query: 188 ELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
           +     E L ++++ +    ++P+  ++  +++ CS    +  GK +H+HVIK G+  ++
Sbjct: 274 KNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFA-MD 332

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + V ++ V  Y+ C    +A K FD +P  DV SWN+++S Y        ALELF  M++
Sbjct: 333 VVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKV 392

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +P   +    ++  +R  ++  GK+IH  + + GF      V SAL DMYGKC  +E
Sbjct: 393 SGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGF-VSSALVDMYGKCGCLE 451

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  VFE    +++   NS++      G+ K  +E+F  M +EGI     TLS+ L A S
Sbjct: 452 MAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACS 511

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            S +  LG  + +H   I++  E++I V+ SL+D Y +CG+I  +  VF+ +P  NVV +
Sbjct: 512 RSVNLQLG--KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSW 569

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
             +++GY + G   EAL +   M + G+ PD +TF  VL  C+   ++++G+ + N +  
Sbjct: 570 NVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKGKEIHNFIIE 629

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
              ++ +      ++DM  + G +D+A  +  Q P   D + W+S++ +   HG 
Sbjct: 630 S-KLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSMIAAYGSHGQ 682


>gi|225436612|ref|XP_002275537.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Vitis vinifera]
          Length = 694

 Score =  333 bits (853), Expect = 2e-88,   Method: Compositional matrix adjust.
 Identities = 197/625 (31%), Positives = 343/625 (54%), Gaps = 7/625 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYD 99
           Q NI      I+ +       SAK +F  +    D+  +N L++ C K     + L ++ 
Sbjct: 35  QNNITLCKSLINLYFSCHLFQSAKLVFQTIENPLDITLWNGLMAACTKNFIFIEGLEVFH 94

Query: 100 EMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            ++    +K  A T+ SVL  CS  G    G  +H  V+  GF +++ + S  V +Y + 
Sbjct: 95  RLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKMVHTHVIKSGFAMDVVVMSSAVGMYAKC 154

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A+ LFDE+PER++A+WN ++  + +  +P++ L ++ +MK  G +P+ ++   ++
Sbjct: 155 NVFEDAIKLFDEMPERDVASWNNVISCYYQDGQPEKALELFEEMKVSGFKPDSVTLTTVI 214

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+  + L+ GK++H  +++ G+  ++ FV++ALVD Y  CG L  AK+ F+ I   +V
Sbjct: 215 SSCARLLDLERGKEIHMELVRSGFA-LDGFVSSALVDMYGKCGCLEMAKEVFEQIQRKNV 273

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWNS+++ Y+        +ELF RM     RP++ +    L   SR+ N+  GK IHGY
Sbjct: 274 VSWNSMIAGYSLKGDSKSCIELFRRMDEEGIRPTLTTLSSILMACSRSVNLQLGKFIHGY 333

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + +   +   + V S+L D+Y KC  I S+  VF++ P  ++   N +++  +  G+  +
Sbjct: 334 IIRNRVE-ADIFVNSSLIDLYFKCGNIGSAENVFQNMPKTNVVSWNVMISGYVKVGSYLE 392

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M   G+  D +T ++ L A S  A    G  + +H   I+S  E N  V  +L
Sbjct: 393 ALVIFTDMRKAGVKPDAITFTSVLPACSQLAVLEKG--KEIHNFIIESKLEINEVVMGAL 450

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++CG ++ +  +F ++P  + V +TS++  Y  +G   EAL + E M Q    PDK
Sbjct: 451 LDMYAKCGAVDEALHIFNQLPERDFVSWTSMIAAYGSHGQAFEALKLFEKMQQSDAKPDK 510

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTFL +L+ C+H+G+V EG   FN M + YG     +HYSC+ID+LGR G L +A E+LQ
Sbjct: 511 VTFLAILSACSHAGLVDEGCYYFNQMIAEYGFKPAVEHYSCLIDLLGRVGRLREAYEILQ 570

Query: 579 QTPG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           +TP    D  + S+L  +C +H    +G ++  +L+E +P D + Y  +SN Y+ + +++
Sbjct: 571 RTPDIREDVGLLSTLFSACHLHKKLDLGEQIGRLLIEKDPDDPSTYIILSNMYASVKKWD 630

Query: 638 VSMQIRETALARKLTRDIGHSLIEV 662
              ++R       L ++ G S IEV
Sbjct: 631 EVRKVRLKIKELGLKKNPGCSWIEV 655



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 141/489 (28%), Positives = 257/489 (52%), Gaps = 8/489 (1%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S+L  C ++ +  +G  IH +++SLG   N+ +   L++LY        A  +F  +   
Sbjct: 8   SLLKTCIDSKYLKQGKLIHQKIVSLGLQNNITLCKSLINLYFSCHLFQSAKLVFQTIENP 67

Query: 175 -NLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            ++  WN ++ A  +     E L ++++ +    ++P+  ++  +++ CS    +  GK 
Sbjct: 68  LDITLWNGLMAACTKNFIFIEGLEVFHRLLHFPYLKPDAFTYPSVLKACSGLGRVGYGKM 127

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H+HVIK G+  +++ V ++ V  Y+ C    +A K FD +P  DV SWN+++S Y    
Sbjct: 128 VHTHVIKSGFA-MDVVVMSSAVGMYAKCNVFEDAIKLFDEMPERDVASWNNVISCYYQDG 186

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
               ALELF  M++   +P   +    ++  +R  ++  GK+IH  + + GF      V 
Sbjct: 187 QPEKALELFEEMKVSGFKPDSVTLTTVISSCARLLDLERGKEIHMELVRSGFALDGF-VS 245

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           SAL DMYGKC  +E +  VFE    +++   NS++      G+ K  +E+F  M +EGI 
Sbjct: 246 SALVDMYGKCGCLEMAKEVFEQIQRKNVVSWNSMIAGYSLKGDSKSCIELFRRMDEEGIR 305

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
               TLS+ L A S S +  LG  + +H   I++  E++I V+ SL+D Y +CG+I  + 
Sbjct: 306 PTLTTLSSILMACSRSVNLQLG--KFIHGYIIRNRVEADIFVNSSLIDLYFKCGNIGSAE 363

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF+ +P  NVV +  +++GY + G   EAL +   M + G+ PD +TF  VL  C+   
Sbjct: 364 NVFQNMPKTNVVSWNVMISGYVKVGSYLEALVIFTDMRKAGVKPDAITFTSVLPACSQLA 423

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           ++++G+ + N +     ++ +      ++DM  + G +D+A  +  Q P   D + W+S+
Sbjct: 424 VLEKGKEIHNFIIES-KLEINEVVMGALLDMYAKCGAVDEALHIFNQLP-ERDFVSWTSM 481

Query: 593 LRSCRVHGN 601
           + +   HG 
Sbjct: 482 IAAYGSHGQ 490


>gi|297743497|emb|CBI36364.3| unnamed protein product [Vitis vinifera]
          Length = 832

 Score =  332 bits (852), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 185/618 (29%), Positives = 332/618 (53%), Gaps = 36/618 (5%)

Query: 54  FVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           + +SG L+    A+KLF+EMP R++  +N +I    +     +A  ++D M+  G+    
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDN 175

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF+S L VC        G Q+H ++++ GF  + ++G+ L+D+Y +       L +FDE
Sbjct: 176 FTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEESCLKVFDE 235

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA--EGVEPNGLSFCYMVRGCSIGMLLD 228
           + ERN  TWN ++ A  +    ++ L ++ +M+   +G++P+  +F  ++  C+     +
Sbjct: 236 MGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDN 295

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           +G+Q+H+H+I+   +  NI V   LV  YS CG L  AK+ F+ +   +  SWNS++  Y
Sbjct: 296 QGRQIHAHLIRAN-ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGY 354

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
                  +AL LF +MQL   +P   S    L+      +   G+++H ++ +   +   
Sbjct: 355 QQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEG 414

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESA--PGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
           + +Q  L DMY KC  ++ +  V++      R+    NS++    + G  K++   F  M
Sbjct: 415 I-LQVVLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEM 473

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           ++  I  D +T+ T +  L                            +  +L+D YS+CG
Sbjct: 474 LESDIEYDVLTMVTIVNLL---------------------------VLETALVDMYSKCG 506

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            I  +  VF+ +   N+V + ++++GYS++G  +EAL + E M ++G+ P++VTFL +L+
Sbjct: 507 AITKARTVFDNMNGKNIVSWNAMISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILS 566

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H+G+V+EG  +F SM+  Y I+A  +HY+CM+D+LGRAG L+ A+E +++ P   + 
Sbjct: 567 ACSHTGLVEEGLRIFTSMQEDYNIEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEV 626

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
             W +LL +CRVH +  +GR  A  L EL+P +   Y  +SN Y+  G ++    IR+  
Sbjct: 627 STWGALLGACRVHKDMDMGRLAAQRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMM 686

Query: 647 LARKLTRDIGHSLIEVNS 664
             + + +D G S IE+NS
Sbjct: 687 KMKGVKKDPGVSWIEINS 704



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 232/495 (46%), Gaps = 38/495 (7%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG---PSVRALDLFD 169
           +SS++  C ++  +  G  IH +++S G+  + Y+ + ++ LY R G       A  LF+
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           E+PERNL  WN M+ A+  +    E   ++++M   GV P+  +F   +R C      D 
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG 193

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GKQ+HS +I  G+   + FV NAL+D Y+ C       K FD +   + ++WNSI+S  A
Sbjct: 194 GKQVHSKLIACGFKG-DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEA 252

Query: 290 DYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
            +    DAL LF RMQ      +P   +F   L   +   N   G+QIH ++ +      
Sbjct: 253 QFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIRANITKN 312

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            + V++ L  MY +C  +  +  +F     R+    NS++     +G  ++A+ +F  M 
Sbjct: 313 II-VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQ 371

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             GI  D  +LS+ L +    + +  G  R LH   +++  E    +   L+D Y++CG 
Sbjct: 372 LNGIKPDCFSLSSMLSSCVSLSDSQKG--RELHNFIVRNTMEEEGILQVVLVDMYAKCGS 429

Query: 468 IELSHQVFEKI--PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           ++ + +V+++      N   + SI+ GY+  G+ +E+ +    M++  +  D +T + ++
Sbjct: 430 MDYAWKVYDQTIKKDRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIV 489

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
                        LV                 + ++DM  + G + KA  +      G +
Sbjct: 490 -----------NLLVLE---------------TALVDMYSKCGAITKARTVFDNM-NGKN 522

Query: 586 CMMWSSLLRSCRVHG 600
            + W++++     HG
Sbjct: 523 IVSWNAMISGYSKHG 537



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 111/435 (25%), Positives = 208/435 (47%), Gaps = 34/435 (7%)

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE---A 266
           N L +  +++ C        GK +H+ +I  G+ + + ++   ++  Y+  G L +   A
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGY-NPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN----F 322
           +K F+ +P  ++ +WN+++  YA  D   +A  +F RM      P   +F   L      
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEAWGIFDRMLKIGVCPDNFTFASALRVCGAL 188

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
            SR G    GKQ+H  +   GF  G   V +AL DMY KC+  ES + VF+    R+   
Sbjct: 189 RSRDG----GKQVHSKLIACGFK-GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVT 243

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFM--VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
            NS++++    G+  DA+ +F  M   ++GI  D+ T +T L   +   + N G  R +H
Sbjct: 244 WNSIISAEAQFGHFNDALVLFLRMQESEDGIQPDQFTFTTLLTLCANQRNDNQG--RQIH 301

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
              I++    NI V   L+  YS CG +  + ++F ++   N   + S++ GY +NG  +
Sbjct: 302 AHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQ 361

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ-----LVFNSMKSVYGIDADRQ 555
           EAL + + M   G+ PD  +   +L+ C      ++G+     +V N+M+    +     
Sbjct: 362 EALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVRNTMEEEGILQV--- 418

Query: 556 HYSCMIDMLGRAGILDKAEELLQQT-PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
               ++DM  + G +D A ++  QT     +  +W+S+L     + N+ + +   N  +E
Sbjct: 419 ---VLVDMYAKCGSMDYAWKVYDQTIKKDRNTALWNSILAG---YANKGLKKESFNHFLE 472

Query: 615 L--EPVDFAVYSQVS 627
           +    +++ V + V+
Sbjct: 473 MLESDIEYDVLTMVT 487


>gi|449497733|ref|XP_004160501.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 200/629 (31%), Positives = 342/629 (54%), Gaps = 17/629 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  N  +  + +S  L SA+++F  M +RD V+YN LISG  +     +AL L+ +M   
Sbjct: 297 YVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRD 356

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            +K    T +S+LS C++ G   +G+Q+H   +  G   ++ +   L+DLY +      A
Sbjct: 357 CLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETA 416

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
              F      N+  WN+ML A+ +L    +   ++ +M+ EG+ PN  ++  ++R C+  
Sbjct: 417 HKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSL 476

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L  G+Q+H+HVIK G+  +N++V + L+D Y+  G L  A +    +P DDV+SW ++
Sbjct: 477 GALYLGEQIHTHVIKTGF-QLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAM 535

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y  +D+  +AL+LF  M+    +     F   ++  +    +  G+QIH      GF
Sbjct: 536 IAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGF 595

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               + + +AL  +Y +C  I+ +   FE    ++    NSL++ L  SG  ++A+++F 
Sbjct: 596 G-ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFV 654

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+     ++  T  +     + ++ AN+   + +H   +K+G++S   VS SL+  Y++
Sbjct: 655 RMLRTEAEVNMFTYGSA--ISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAK 712

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G I  + + F  +   NV+ + +++ GYS++G G EAL + E M   G++P+ VTF+ V
Sbjct: 713 SGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGV 772

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+ C+H G+VKEG   F SM  ++ +    +HY C++D+LGRAG LD+A E +++ P   
Sbjct: 773 LSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPA 832

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           D M+W +LL +C +H N  IG R A+ L+ELEP D A Y  +SN Y+      VS Q   
Sbjct: 833 DAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA------VSRQWIH 886

Query: 645 TALARKLTRDI------GHSLIEV-NSCH 666
              +RKL +D       G S IEV N+ H
Sbjct: 887 RDWSRKLMKDXGVKKEPGRSWIEVKNAVH 915



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 288/558 (51%), Gaps = 14/558 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ID + K+G++ SAKK+F+ +  +D+VT+  +ISG  +    ++A+ L+ +M +  I
Sbjct: 198 ANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEI 257

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +    SSVLS  +    +  G Q+HC V+  GF    Y+ + LV LY R    + A  
Sbjct: 258 FPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAER 317

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F  +  R+  ++N ++    +    D  L ++ KM+ + ++P+ ++   ++  C+    
Sbjct: 318 IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +G QLHSH IK G +  +I +  +L+D YS C  +  A K F     ++++ WN ++ 
Sbjct: 378 LHKGMQLHSHAIKAG-MSADIILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLV 436

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y   D + D+ E+F +MQ+    P+  ++   L   +  G +Y G+QIH +V K GF  
Sbjct: 437 AYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQL 496

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            +V+V S L DMY K   +  ++ +    P   +    +++   +      +A+++F  M
Sbjct: 497 -NVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYS 463
              GI  D +  ++     ++SA A + + R    +H  +  +GF ++++++ +L+  Y+
Sbjct: 556 EYRGIQFDNIGFAS-----AISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYA 610

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           RCG I+ ++  FEKI   N + + S+++G +++G   EAL +   M++     +  T+  
Sbjct: 611 RCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGS 670

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG-ILDKAEELLQQTPG 582
            ++       +K+GQ + +SM    G D++R+  + +I +  ++G I D   E    +  
Sbjct: 671 AISAAASLANIKQGQQI-HSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE- 728

Query: 583 GGDCMMWSSLLRSCRVHG 600
             + + W++++     HG
Sbjct: 729 -RNVISWNAMITGYSQHG 745



 Score =  200 bits (508), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 250/502 (49%), Gaps = 7/502 (1%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           + + L + M   G++ +   +  +L  C  +G   E +++HCR+   GF     +   LV
Sbjct: 41  KRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLV 100

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D Y R G    A+ +FDE   R++ +WN M+  F       +V  ++ +M AEG+ PNG 
Sbjct: 101 DNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGY 160

Query: 213 SFCYMVRGCSIG-MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           +F  +++ C  G +  +  KQ+HS     G+ D +  VAN L+D YS  G +  AKK F+
Sbjct: 161 TFAGVLKACVGGDIAFNYVKQVHSRTFYYGF-DSSPLVANLLIDLYSKNGYIESAKKVFN 219

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            I + D+++W +++S  +   L  +A+ LF  M      P+       L+ +++      
Sbjct: 220 CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFEL 279

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+Q+H  V K GF H   +V + L  +Y +   + S+  +F +   R     NSL++ L+
Sbjct: 280 GEQLHCLVIKWGF-HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLV 338

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
             G    A+E+F  M  + +  D +T+++ L A +   + + G    LH  AIK+G  ++
Sbjct: 339 QQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG--MQLHSHAIKAGMSAD 396

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           I +  SL+D YS+C  +E +H+ F    + N+V +  ++  Y +     ++ ++   M  
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLXTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G+IP++ T+  +L  C   G +  G+ +   +    G   +    S +IDM  + G L 
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLA 515

Query: 572 KAEELLQQTPGGGDCMMWSSLL 593
            A  +L++ P   D + W++++
Sbjct: 516 LALRILRRLP-EDDVVSWTAMI 536



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 173/328 (52%), Gaps = 2/328 (0%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           ++P   T  ++  TCTS+  L     + ++  +   QLN+Y  +  ID + K G L  A 
Sbjct: 459 MIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL 518

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           ++   +P  D+V++  +I+G  +     +AL L++EM   GI+     F+S +S C+   
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
              +G QIH +  + GFG +L I + L+ LY R G    A   F+++ ++N  +WN ++ 
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
              +    +E L+++ +M     E N  ++   +   +    + +G+Q+HS V+K G+ D
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGY-D 697

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
               V+N+L+  Y+  GS+ +A + F+ +   +VISWN++++ Y+ +    +AL LF  M
Sbjct: 698 SEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEM 757

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           ++C   P+  +FV  L+  S  G V  G
Sbjct: 758 KVCGIMPNHVTFVGVLSACSHIGLVKEG 785


>gi|357507065|ref|XP_003623821.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355498836|gb|AES80039.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 837

 Score =  332 bits (851), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 208/655 (31%), Positives = 342/655 (52%), Gaps = 39/655 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS----------------GCG 86
           +IY +N+ ++   KSG +N A+KLFD+MP +D  ++N +IS                GC 
Sbjct: 64  SIYQTNQLLNQLSKSGQVNDARKLFDKMPQKDEYSWNTMISSYVNVGRLVEARELFDGCS 123

Query: 87  ---------------KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
                          KF    +A  L+  M   G K S  T  SVL VCS+ G    G  
Sbjct: 124 CKSSITWSSIISGYCKFGCKVEAFDLFRSMRLEGWKASQFTLGSVLRVCSSLGLIQTGEM 183

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD--ELPERNLATWNLMLRAFCEL 189
           IH  V+  GF  N+++ + LVD+Y +      A  LF   E   +N   W  M+  + + 
Sbjct: 184 IHGFVVKNGFEGNVFVVTGLVDMYAKCKCVSEAEFLFKGLEFDRKNHVLWTAMVTGYAQN 243

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
               + +  +  M A+GVE N  +F  ++  CS  +    G+Q+H  ++K G+   N++V
Sbjct: 244 GDGYKAVEFFRYMHAQGVECNQYTFPTILTACSSVLARCFGEQVHGFIVKSGF-GSNVYV 302

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            +ALVD Y+ CG L  AK   + +  DDV+SWNS++  +  + L  +AL LF  M     
Sbjct: 303 QSALVDMYAKCGDLKNAKNMLETMEDDDVVSWNSLMVGFVRHGLEEEALRLFKNMHGRNM 362

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
           +    +F   LN     G++   K +HG + K GF++  + V +AL DMY K   ++ + 
Sbjct: 363 KIDDYTFPSVLN-CCVVGSIN-PKSVHGLIIKTGFENYKL-VSNALVDMYAKTGDMDCAY 419

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            VFE    + +    SL+T    + + ++++++F  M   G+  D+  +++ L A +   
Sbjct: 420 TVFEKMLEKDVISWTSLVTGYAQNNSHEESLKIFCDMRVTGVNPDQFIVASILSACAELT 479

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
               G  + +H   IKSG   + +V  SL+  Y++CG ++ +  +F  +   +V+ +T+I
Sbjct: 480 LLEFG--KQVHLDFIKSGLRWSQSVYNSLVAMYAKCGCLDDADAIFVSMQVKDVITWTAI 537

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + GY++NG GR +L   + M+  G  PD +TF+ +L  C+H+G+V EG+  F  M  VYG
Sbjct: 538 IVGYAQNGKGRNSLKFYDAMVSSGTRPDFITFIGLLFACSHAGLVDEGRKYFQQMNKVYG 597

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
           I    +HY+CMID+ GR+G LD+A++LL Q     D  +W SLL +CRVH N  +  R A
Sbjct: 598 IKPGPEHYACMIDLFGRSGKLDEAKQLLDQMDVKPDATVWKSLLSACRVHENLELAERAA 657

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             L ELEP++   Y  +SN YS   ++    +IR+   ++ + ++ G S +E+NS
Sbjct: 658 TNLFELEPMNAMPYVMLSNMYSASRKWNDVAKIRKLMKSKGIVKEPGCSWLEINS 712


>gi|15235115|ref|NP_195663.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75210987|sp|Q9SVA5.1|PP357_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g39530
 gi|5042169|emb|CAB44688.1| putative protein [Arabidopsis thaliana]
 gi|7270937|emb|CAB80616.1| putative protein [Arabidopsis thaliana]
 gi|332661682|gb|AEE87082.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 834

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 186/627 (29%), Positives = 338/627 (53%), Gaps = 14/627 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y     ID ++K G+++ A+ +FD +P +  VT+  +ISGC K      +L L+ +++
Sbjct: 182 DVYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +       S+VLS CS   F   G QIH  +L  G  ++  + + L+D Y++ G  +
Sbjct: 242 EDNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDASLMNVLIDSYVKCGRVI 301

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ +P +N+ +W  +L  + + +   E + ++  M   G++P+  +   ++  C+
Sbjct: 302 AAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCA 361

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G Q+H++ IK   +  + +V N+L+D Y+ C  L +A+K FD     DV+ +N
Sbjct: 362 SLHALGFGTQVHAYTIKAN-LGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFN 420

Query: 283 SIVSIYADYDL---IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +++  Y+       + +AL +F  M+    RPS+ +FV  L  ++   ++   KQIHG +
Sbjct: 421 AMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLM 480

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G +   +   SAL D+Y  C  ++ S  VF+    + L   NS+    +     ++A
Sbjct: 481 FKYGLNL-DIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEA 539

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSC 456
           + +F  +       DE T +       V+A+ NL S +L    HC  +K G E N  ++ 
Sbjct: 540 LNLFLELQLSRERPDEFTFANM-----VTAAGNLASVQLGQEFHCQLLKRGLECNPYITN 594

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG  E +H+ F+   S +VVC+ S+++ Y+ +G G++AL MLE M+  G+ P
Sbjct: 595 ALLDMYAKCGSPEDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEP 654

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + +TF+ VL+ C+H+G+V++G   F  M   +GI+ + +HY CM+ +LGRAG L+KA EL
Sbjct: 655 NYITFVGVLSACSHAGLVEDGLKQFELMLR-FGIEPETEHYVCMVSLLGRAGRLNKAREL 713

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +++ P     ++W SLL  C   GN  +    A + +  +P D   ++ +SN Y+  G +
Sbjct: 714 IEKMPTKPAAIVWRSLLSGCAKAGNVELAEHAAEMAILSDPKDSGSFTMLSNIYASKGMW 773

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
             + ++RE      + ++ G S I +N
Sbjct: 774 TEAKKVRERMKVEGVVKEPGRSWIGIN 800



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 154/583 (26%), Positives = 294/583 (50%), Gaps = 19/583 (3%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+ Y SN  I+ + ++G +  A+K+F++MP R++V+++ ++S C      +++L ++ E
Sbjct: 76  ELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGIYEESLVVFLE 135

Query: 101 MVSHGIKESASTF--SSVLSVCSNAGFYTEG----IQIHCRVLSLGFGLNLYIGSPLVDL 154
                 K+S + +  SS +  CS  G    G     Q+   ++  GF  ++Y+G+ L+D 
Sbjct: 136 FW-RTRKDSPNEYILSSFIQACS--GLDGRGRWMVFQLQSFLVKSGFDRDVYVGTLLIDF 192

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y++ G    A  +FD LPE++  TW  M+    ++ R    L+++ ++  + V P+G   
Sbjct: 193 YLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLMEDNVVPDGYIL 252

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++  CSI   L+ GKQ+H+H+++ G ++++  + N L+D Y  CG +I A K F+ +P
Sbjct: 253 STVLSACSILPFLEGGKQIHAHILRYG-LEMDASLMNVLIDSYVKCGRVIAAHKLFNGMP 311

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             ++ISW +++S Y    L  +A+ELF  M     +P + +    L   +    + FG Q
Sbjct: 312 NKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILTSCASLHALGFGTQ 371

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H Y  K    + S +V ++L DMY KC+ +  +  VF+      +   N+++      G
Sbjct: 372 VHAYTIKANLGNDS-YVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLFNAMIEGYSRLG 430

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIA 453
              +  E      D    L   +L T +  L  SAS  +LG  + +H    K G   +I 
Sbjct: 431 TQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQIHGLMFKYGLNLDIF 490

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM-LEVMIQR 512
              +L+D YS C  ++ S  VF+++   ++V + S+  GY +     EAL++ LE+ + R
Sbjct: 491 AGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLELQLSR 550

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
              PD+ TF  ++    +   V+ GQ  F+      G++ +    + ++DM  + G  + 
Sbjct: 551 ER-PDEFTFANMVTAAGNLASVQLGQ-EFHCQLLKRGLECNPYITNALLDMYAKCGSPED 608

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           A +    +    D + W+S++ S   HG    G++   +L ++
Sbjct: 609 AHKAF-DSAASRDVVCWNSVISSYANHGE---GKKALQMLEKM 647



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 129/512 (25%), Positives = 246/512 (48%), Gaps = 30/512 (5%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H +++  G  L+ Y+ + L++LY R G  V A  +F+++PERNL +W+ M+ A      
Sbjct: 66  VHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHGI 125

Query: 192 PDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGK----QLHSHVIKLGWVDVN 246
            +E L ++ +  +     PN       ++ CS   L   G+    QL S ++K G+ D +
Sbjct: 126 YEESLVVFLEFWRTRKDSPNEYILSSFIQACS--GLDGRGRWMVFQLQSFLVKSGF-DRD 182

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           ++V   L+DFY   G++  A+  FD +P    ++W +++S        + +L+LF+++  
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKSTVTWTTMISGCVKMGRSYVSLQLFYQLME 242

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
               P        L+  S    +  GKQIH ++ + G +  +  + + L D Y KC  + 
Sbjct: 243 DNVVPDGYILSTVLSACSILPFLEGGKQIHAHILRYGLEMDA-SLMNVLIDSYVKCGRVI 301

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           ++  +F   P +++    +L++    +   K+A+E+F  M   G+  D    S+ L   S
Sbjct: 302 AAHKLFNGMPNKNIISWTTLLSGYKQNALHKEAMELFTSMSKFGLKPDMYACSSILT--S 359

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            ++   LG    +H   IK+   ++  V+ SL+D Y++C  +  + +VF+   + +VV F
Sbjct: 360 CASLHALGFGTQVHAYTIKANLGNDSYVTNSLIDMYAKCDCLTDARKVFDIFAAADVVLF 419

Query: 487 TSIMNGYSRNGMG---REALDMLEVMIQRGLIPDKVTFLCVL---AGCNHSGMVKEGQLV 540
            +++ GYSR G      EAL++   M  R + P  +TF+ +L   A     G+ K+    
Sbjct: 420 NAMIEGYSRLGTQWELHEALNIFRDMRFRLIRPSLLTFVSLLRASASLTSLGLSKQ---- 475

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            + +   YG++ D    S +ID+      L K   L+       D ++W+S+  +  V  
Sbjct: 476 IHGLMFKYGLNLDIFAGSALIDVYSNCYCL-KDSRLVFDEMKVKDLVIWNSMF-AGYVQQ 533

Query: 601 NEIIGRRVANILMELE-----PVDFAVYSQVS 627
           +E       N+ +EL+     P +F   + V+
Sbjct: 534 SE--NEEALNLFLELQLSRERPDEFTFANMVT 563



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 124/246 (50%), Gaps = 2/246 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+I++ +  ID +     L  ++ +FDEM  +D+V +N + +G  +    ++AL L+ E+
Sbjct: 487 LDIFAGSALIDVYSNCYCLKDSRLVFDEMKVKDLVIWNSMFAGYVQQSENEEALNLFLEL 546

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
                +    TF+++++   N      G + HC++L  G   N YI + L+D+Y + G  
Sbjct: 547 QLSRERPDEFTFANMVTAAGNLASVQLGQEFHCQLLKRGLECNPYITNALLDMYAKCGSP 606

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   FD    R++  WN ++ ++       + L+M  KM +EG+EPN ++F  ++  C
Sbjct: 607 EDAHKAFDSAASRDVVCWNSVISSYANHGEGKKALQMLEKMMSEGIEPNYITFVGVLSAC 666

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD-VIS 280
           S   L+++G +    +++ G ++        +V      G L +A++  + +P     I 
Sbjct: 667 SHAGLVEDGLKQFELMLRFG-IEPETEHYVCMVSLLGRAGRLNKARELIEKMPTKPAAIV 725

Query: 281 WNSIVS 286
           W S++S
Sbjct: 726 WRSLLS 731



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 44/181 (24%), Positives = 87/181 (48%), Gaps = 7/181 (3%)

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           ++H   I  G E +  +S  L++ YSR G +  + +VFEK+P  N+V ++++++  + +G
Sbjct: 65  VVHGQIIVWGLELDTYLSNILINLYSRAGGMVYARKVFEKMPERNLVSWSTMVSACNHHG 124

Query: 498 MGREALDM-LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY---GIDAD 553
           +  E+L + LE    R   P++      +  C  SG+   G+ +   ++S     G D D
Sbjct: 125 IYEESLVVFLEFWRTRKDSPNEYILSSFIQAC--SGLDGRGRWMVFQLQSFLVKSGFDRD 182

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
               + +ID   + G +D A  +    P     + W++++  C   G   +  ++   LM
Sbjct: 183 VYVGTLLIDFYLKDGNIDYARLVFDALPEKS-TVTWTTMISGCVKMGRSYVSLQLFYQLM 241

Query: 614 E 614
           E
Sbjct: 242 E 242


>gi|359482718|ref|XP_002263673.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Vitis vinifera]
          Length = 1088

 Score =  332 bits (850), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 196/655 (29%), Positives = 344/655 (52%), Gaps = 37/655 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + +  N  ID + K     S  K+FDEM  R+ VT+N +IS   +F H   AL L+  M 
Sbjct: 310 DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQ 369

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G K +     S+L   +      +G ++H  ++      ++ +GS LVD+Y + G   
Sbjct: 370 ESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKCGMVE 429

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGC 221
            A  +F  L ERN  ++N +L  + +  + +E L +Y+ M++E G++P+  +F  ++  C
Sbjct: 430 EAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLC 489

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +     ++G+Q+H+H+I+   +  NI V   LV  YS CG L  AK+ F+ +   +  SW
Sbjct: 490 ANQRNDNQGRQIHAHLIRAN-ITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNAYSW 548

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NS++  Y       +AL LF +MQL   +P   S    L+      +   G+++H ++ +
Sbjct: 549 NSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNFIVR 608

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              +   + +Q  L DMY KC  ++ +  V++    + +   N ++++ ++SG   DA  
Sbjct: 609 NTMEEEGI-LQVVLVDMYAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKN 667

Query: 402 MF----------------GF---------------MVDEGIGLDEVTLSTTLKALSVSAS 430
           +F                G+               M++  I  D +T+ T +   S   +
Sbjct: 668 LFDQMEQRNTALWNSILAGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPA 727

Query: 431 ANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
              G    LH   IK GF   ++ +  +L+D YS+CG I  +  VF+ +   N+V + ++
Sbjct: 728 LEHGD--QLHSLIIKKGFVNCSVVLETALVDMYSKCGAITKARTVFDNMNGKNIVSWNAM 785

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           ++GYS++G  +EAL + E M ++G+ P++VTFL +L+ C+H+G+V+EG  +F SM+  Y 
Sbjct: 786 ISGYSKHGCSKEALILYEEMPKKGMYPNEVTFLAILSACSHTGLVEEGLRIFTSMQEDYN 845

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
           I+A  +HY+CM+D+LGRAG L+ A+E +++ P   +   W +LL +CRVH +  +GR  A
Sbjct: 846 IEAKAEHYTCMVDLLGRAGRLEDAKEFVEKMPIEPEVSTWGALLGACRVHKDMDMGRLAA 905

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             L EL+P +   Y  +SN Y+  G ++    IR+    + + +D G S IE+NS
Sbjct: 906 QRLFELDPQNPGPYVIMSNIYAAAGRWKEVEDIRQMMKMKGVKKDPGVSWIEINS 960



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 161/593 (27%), Positives = 286/593 (48%), Gaps = 29/593 (4%)

Query: 54  FVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           + +SG L+    A+KLF+EMP R++  +N +I    +     + L LY  M   G     
Sbjct: 116 YARSGCLDDLCYARKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDK 175

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF SV+  C          Q+   V+  G   NL++G  LVD Y R G    A+   DE
Sbjct: 176 FTFPSVIKACIAMEDMGGVRQLQSSVVKAGLNCNLFVGGALVDGYARFGWMDDAVTSLDE 235

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +   ++ TWN ++  + ++   +E   ++++M   GV P+  +F   +R C      D G
Sbjct: 236 IEGTSVVTWNAVIAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG 295

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+HS +I  G+   + FV NAL+D Y+ C       K FD +   + ++WNSI+S  A 
Sbjct: 296 KQVHSKLIACGFKG-DTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQ 354

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
           +    DAL LF RMQ    + +  +    L  ++   ++  G+++HG++ +    +  + 
Sbjct: 355 FGHFNDALVLFLRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVR-NLLNSDII 413

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE- 409
           + SAL DMY KC ++E +  VF S   R+    N+L+   +  G  ++A+E++  M  E 
Sbjct: 414 LGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSED 473

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           GI  D+ T +T L   +   + N G  R +H   I++    NI V   L+  YS CG + 
Sbjct: 474 GIQPDQFTFTTLLTLCANQRNDNQG--RQIHAHLIRANITKNIIVETELVHMYSECGRLN 531

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            + ++F ++   N   + S++ GY +NG  +EAL + + M   G+ PD  +   +L+ C 
Sbjct: 532 YAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCV 591

Query: 530 HSGMVKEGQ-----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
                ++G+     +V N+M+    +         ++DM  + G +D A ++  QT    
Sbjct: 592 SLSDSQKGRELHNFIVRNTMEEEGILQV------VLVDMYAKCGSMDYAWKVYDQTIKKD 645

Query: 585 ---DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
              + +M S+ + S R +          N+  ++E  + A+++ +   Y+  G
Sbjct: 646 VILNNVMVSAFVNSGRAND-------AKNLFDQMEQRNTALWNSILAGYANKG 691



 Score =  217 bits (553), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 165/584 (28%), Positives = 284/584 (48%), Gaps = 56/584 (9%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG---PSVRALDLFD 169
           +SS++  C ++  +  G  IH +++S G+  + Y+ + ++ LY R G       A  LF+
Sbjct: 74  YSSLIQDCIDSNSFQRGKSIHTQMISNGYNPDAYLMTKILMLYARSGCLDDLCYARKLFE 133

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           E+PERNL  WN M+ A+  +    EVLR+Y +M+  G   +  +F  +++ C     +  
Sbjct: 134 EMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAMEDMGG 193

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            +QL S V+K G ++ N+FV  ALVD Y+  G + +A  S D I    V++WN++++ Y 
Sbjct: 194 VRQLQSSVVKAG-LNCNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYV 252

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLN----FASRTGNVYFGKQIHGYVTKLGFD 345
                 +A  +F RM      P   +F   L       SR G    GKQ+H  +   GF 
Sbjct: 253 KILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDG----GKQVHSKLIACGFK 308

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
            G   V +AL DMY KC+  ES + VF+    R+    NS++++    G+  DA+ +F  
Sbjct: 309 -GDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLR 367

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M + G   +   L + L  ++ +  A++G  R LH   +++   S+I +  +L+D YS+C
Sbjct: 368 MQESGYKSNRFNLGSIL--MASAGLADIGKGRELHGHLVRNLLNSDIILGSALVDMYSKC 425

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI-QRGLIPDKVTFLCV 524
           G +E +HQVF  +   N V + +++ GY + G   EAL++   M  + G+ PD+ TF  +
Sbjct: 426 GMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTL 485

Query: 525 LAGCN-----------HSGMVK---------EGQLV--------FNSMKSVYGIDADRQH 556
           L  C            H+ +++         E +LV         N  K ++   A+R  
Sbjct: 486 LTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEIFNRMAERNA 545

Query: 557 YS--CMIDMLGRAGILDKAEELLQQTPGGG---DCMMWSSLLRSCRVHGNEIIGRRVANI 611
           YS   MI+   + G   +A  L +Q    G   DC   SS+L SC    +   GR + N 
Sbjct: 546 YSWNSMIEGYQQNGETQEALRLFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKGRELHNF 605

Query: 612 L----MELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           +    ME E +   V   + + Y++ G  + + ++ +  + + +
Sbjct: 606 IVRNTMEEEGILQVV---LVDMYAKCGSMDYAWKVYDQTIKKDV 646



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 131/590 (22%), Positives = 277/590 (46%), Gaps = 37/590 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++     +D + + G ++ A    DE+    +VT+N +I+G  K    ++A  ++D M+
Sbjct: 209 NLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAVIAGYVKILSWEEAWGIFDRML 268

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+     TF+S L VC        G Q+H ++++ GF  + ++G+ L+D+Y +     
Sbjct: 269 KIGVCPDNFTFASALRVCGALRSRDGGKQVHSKLIACGFKGDTFVGNALIDMYAKCDDEE 328

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
             L +FDE+ ERN  TWN ++ A  +    ++ L ++ +M+  G + N  +   ++   +
Sbjct: 329 SCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLFLRMQESGYKSNRFNLGSILMASA 388

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               + +G++LH H+++   ++ +I + +ALVD YS CG + EA + F  +   + +S+N
Sbjct: 389 GLADIGKGRELHGHLVR-NLLNSDIILGSALVDMYSKCGMVEEAHQVFRSLLERNEVSYN 447

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++++ Y       +ALEL+  MQ     +P   +F   L   +   N   G+QIH ++ +
Sbjct: 448 ALLAGYVQEGKAEEALELYHDMQSEDGIQPDQFTFTTLLTLCANQRNDNQGRQIHAHLIR 507

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                  + V++ L  MY +C  +  +  +F     R+    NS++     +G  ++A+ 
Sbjct: 508 ANITKNII-VETELVHMYSECGRLNYAKEIFNRMAERNAYSWNSMIEGYQQNGETQEALR 566

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M   GI  D  +LS+ L +    + +  G  R LH   +++  E    +   L+D 
Sbjct: 567 LFKQMQLNGIKPDCFSLSSMLSSCVSLSDSQKG--RELHNFIVRNTMEEEGILQVVLVDM 624

Query: 462 YSRCGHIELSHQV-------------------------------FEKIPSPNVVCFTSIM 490
           Y++CG ++ + +V                               F+++   N   + SI+
Sbjct: 625 YAKCGSMDYAWKVYDQTIKKDVILNNVMVSAFVNSGRANDAKNLFDQMEQRNTALWNSIL 684

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            GY+  G+ +E+ +    M++  +  D +T + ++  C+    ++ G  + + +     +
Sbjct: 685 AGYANKGLKKESFNHFLEMLESDIEYDVLTMVTIVNLCSSLPALEHGDQLHSLIIKKGFV 744

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +      + ++DM  + G + KA  +      G + + W++++     HG
Sbjct: 745 NCSVVLETALVDMYSKCGAITKARTVFDNM-NGKNIVSWNAMISGYSKHG 793



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 104/477 (21%), Positives = 210/477 (44%), Gaps = 54/477 (11%)

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE---A 266
           N L +  +++ C        GK +H+ +I  G+ + + ++   ++  Y+  G L +   A
Sbjct: 70  NPLPYSSLIQDCIDSNSFQRGKSIHTQMISNGY-NPDAYLMTKILMLYARSGCLDDLCYA 128

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           +K F+ +P  ++ +WN+++  YA  D   + L L+ RM+         +F   +      
Sbjct: 129 RKLFEEMPERNLTAWNTMILAYARVDDYMEVLRLYGRMRGSGNFSDKFTFPSVIKACIAM 188

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
            ++   +Q+   V K G +  ++ V  AL D Y +   ++ +V   +   G S+   N++
Sbjct: 189 EDMGGVRQLQSSVVKAGLN-CNLFVGGALVDGYARFGWMDDAVTSLDEIEGTSVVTWNAV 247

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +   +   + ++A  +F  M+  G+  D  T ++ L+      S + G  + +H   I  
Sbjct: 248 IAGYVKILSWEEAWGIFDRMLKIGVCPDNFTFASALRVCGALRSRDGG--KQVHSKLIAC 305

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           GF+ +  V  +L+D Y++C   E   +VF+++   N V + SI++  ++ G   +AL + 
Sbjct: 306 GFKGDTFVGNALIDMYAKCDDEESCLKVFDEMGERNQVTWNSIISAEAQFGHFNDALVLF 365

Query: 507 EVMIQRGLIPDKVTFLCVL---AGCNHSGMVKE--GQLVFNSMKSVYGIDADRQHYSCMI 561
             M + G   ++     +L   AG    G  +E  G LV N + S      D    S ++
Sbjct: 366 LRMQESGYKSNRFNLGSILMASAGLADIGKGRELHGHLVRNLLNS------DIILGSALV 419

Query: 562 DMLGRAGILD----------------------------KAEELLQ-----QTPGG--GDC 586
           DM  + G+++                            KAEE L+     Q+  G   D 
Sbjct: 420 DMYSKCGMVEEAHQVFRSLLERNEVSYNALLAGYVQEGKAEEALELYHDMQSEDGIQPDQ 479

Query: 587 MMWSSLLRSCRVHGNEIIGRRV-ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             +++LL  C    N+  GR++ A+++      +  V +++ + YSE G    + +I
Sbjct: 480 FTFTTLLTLCANQRNDNQGRQIHAHLIRANITKNIIVETELVHMYSECGRLNYAKEI 536


>gi|449448586|ref|XP_004142047.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 1037

 Score =  331 bits (849), Expect = 6e-88,   Method: Compositional matrix adjust.
 Identities = 200/629 (31%), Positives = 342/629 (54%), Gaps = 17/629 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  N  +  + +S  L SA+++F  M +RD V+YN LISG  +     +AL L+ +M   
Sbjct: 297 YVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRD 356

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            +K    T +S+LS C++ G   +G+Q+H   +  G   ++ +   L+DLY +      A
Sbjct: 357 CLKPDCITVASLLSACASVGALHKGMQLHSHAIKAGMSADIILEGSLLDLYSKCADVETA 416

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
              F      N+  WN+ML A+ +L    +   ++ +M+ EG+ PN  ++  ++R C+  
Sbjct: 417 HKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSL 476

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L  G+Q+H+HVIK G+  +N++V + L+D Y+  G L  A +    +P DDV+SW ++
Sbjct: 477 GALYLGEQIHTHVIKTGF-QLNVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAM 535

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y  +D+  +AL+LF  M+    +     F   ++  +    +  G+QIH      GF
Sbjct: 536 IAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIRALRQGQQIHAQSYAAGF 595

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               + + +AL  +Y +C  I+ +   FE    ++    NSL++ L  SG  ++A+++F 
Sbjct: 596 G-ADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFV 654

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+     ++  T  +     + ++ AN+   + +H   +K+G++S   VS SL+  Y++
Sbjct: 655 RMLRTEAEVNMFTYGSA--ISAAASLANIKQGQQIHSMVLKTGYDSEREVSNSLISLYAK 712

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G I  + + F  +   NV+ + +++ GYS++G G EAL + E M   G++P+ VTF+ V
Sbjct: 713 SGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEMKVCGIMPNHVTFVGV 772

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+ C+H G+VKEG   F SM  ++ +    +HY C++D+LGRAG LD+A E +++ P   
Sbjct: 773 LSACSHIGLVKEGLDYFESMFKIHDLVPKSEHYVCVVDLLGRAGQLDRAMEYIKEMPIPA 832

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           D M+W +LL +C +H N  IG R A+ L+ELEP D A Y  +SN Y+      VS Q   
Sbjct: 833 DAMIWRTLLSACVIHKNIEIGERAAHHLLELEPEDSATYVLISNIYA------VSRQWIH 886

Query: 645 TALARKLTRD------IGHSLIEV-NSCH 666
              +RKL +D       G S IEV N+ H
Sbjct: 887 RDWSRKLMKDRGVKKEPGRSWIEVKNAVH 915



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 288/558 (51%), Gaps = 14/558 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ID + K+G++ SAKK+F+ +  +D+VT+  +ISG  +    ++A+ L+ +M +  I
Sbjct: 198 ANLLIDLYSKNGYIESAKKVFNCICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEI 257

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +    SSVLS  +    +  G Q+HC V+  GF    Y+ + LV LY R    + A  
Sbjct: 258 FPTPYVLSSVLSASTKIQLFELGEQLHCLVIKWGFHSETYVCNGLVALYSRSRKLISAER 317

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F  +  R+  ++N ++    +    D  L ++ KM+ + ++P+ ++   ++  C+    
Sbjct: 318 IFSTMNSRDGVSYNSLISGLVQQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGA 377

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +G QLHSH IK G +  +I +  +L+D YS C  +  A K F     ++++ WN ++ 
Sbjct: 378 LHKGMQLHSHAIKAG-MSADIILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLV 436

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y   D + D+ E+F +MQ+    P+  ++   L   +  G +Y G+QIH +V K GF  
Sbjct: 437 AYGQLDNLSDSFEIFRQMQMEGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQL 496

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            +V+V S L DMY K   +  ++ +    P   +    +++   +      +A+++F  M
Sbjct: 497 -NVYVCSVLIDMYAKYGQLALALRILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEM 555

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYS 463
              GI  D +  ++     ++SA A + + R    +H  +  +GF ++++++ +L+  Y+
Sbjct: 556 EYRGIQFDNIGFAS-----AISACAGIRALRQGQQIHAQSYAAGFGADLSINNALISLYA 610

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           RCG I+ ++  FEKI   N + + S+++G +++G   EAL +   M++     +  T+  
Sbjct: 611 RCGRIQEAYLAFEKIGDKNNISWNSLVSGLAQSGYFEEALQVFVRMLRTEAEVNMFTYGS 670

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG-ILDKAEELLQQTPG 582
            ++       +K+GQ + +SM    G D++R+  + +I +  ++G I D   E    +  
Sbjct: 671 AISAAASLANIKQGQQI-HSMVLKTGYDSEREVSNSLISLYAKSGSISDAWREFNDMSE- 728

Query: 583 GGDCMMWSSLLRSCRVHG 600
             + + W++++     HG
Sbjct: 729 -RNVISWNAMITGYSQHG 745



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 135/502 (26%), Positives = 250/502 (49%), Gaps = 7/502 (1%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           + + L + M   G++ +   +  +L  C  +G   E +++HCR+   GF     +   LV
Sbjct: 41  KRIQLMNFMEERGVRSNYQNYLWLLEGCLTSGSLFETMRLHCRISKSGFDGEPLLIDSLV 100

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D Y R G    A+ +FDE   R++ +WN M+  F       +V  ++ +M AEG+ PNG 
Sbjct: 101 DNYFRHGDQHGAVKVFDENSNRSVFSWNKMIHVFVAQKSNFQVFCLFRRMLAEGITPNGY 160

Query: 213 SFCYMVRGCSIG-MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           +F  +++ C  G +  +  KQ+HS     G+ D +  VAN L+D YS  G +  AKK F+
Sbjct: 161 TFAGVLKACVGGDIAFNYVKQVHSRTFYYGF-DSSPLVANLLIDLYSKNGYIESAKKVFN 219

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            I + D+++W +++S  +   L  +A+ LF  M      P+       L+ +++      
Sbjct: 220 CICMKDIVTWVAMISGLSQNGLEEEAILLFCDMHASEIFPTPYVLSSVLSASTKIQLFEL 279

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+Q+H  V K GF H   +V + L  +Y +   + S+  +F +   R     NSL++ L+
Sbjct: 280 GEQLHCLVIKWGF-HSETYVCNGLVALYSRSRKLISAERIFSTMNSRDGVSYNSLISGLV 338

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
             G    A+E+F  M  + +  D +T+++ L A +   + + G    LH  AIK+G  ++
Sbjct: 339 QQGFSDRALELFTKMQRDCLKPDCITVASLLSACASVGALHKG--MQLHSHAIKAGMSAD 396

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           I +  SL+D YS+C  +E +H+ F    + N+V +  ++  Y +     ++ ++   M  
Sbjct: 397 IILEGSLLDLYSKCADVETAHKFFLTTETENIVLWNVMLVAYGQLDNLSDSFEIFRQMQM 456

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G+IP++ T+  +L  C   G +  G+ +   +    G   +    S +IDM  + G L 
Sbjct: 457 EGMIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKT-GFQLNVYVCSVLIDMYAKYGQLA 515

Query: 572 KAEELLQQTPGGGDCMMWSSLL 593
            A  +L++ P   D + W++++
Sbjct: 516 LALRILRRLP-EDDVVSWTAMI 536



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/328 (28%), Positives = 173/328 (52%), Gaps = 2/328 (0%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           ++P   T  ++  TCTS+  L     + ++  +   QLN+Y  +  ID + K G L  A 
Sbjct: 459 MIPNQFTYPSILRTCTSLGALYLGEQIHTHVIKTGFQLNVYVCSVLIDMYAKYGQLALAL 518

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           ++   +P  D+V++  +I+G  +     +AL L++EM   GI+     F+S +S C+   
Sbjct: 519 RILRRLPEDDVVSWTAMIAGYVQHDMFSEALQLFEEMEYRGIQFDNIGFASAISACAGIR 578

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
              +G QIH +  + GFG +L I + L+ LY R G    A   F+++ ++N  +WN ++ 
Sbjct: 579 ALRQGQQIHAQSYAAGFGADLSINNALISLYARCGRIQEAYLAFEKIGDKNNISWNSLVS 638

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
              +    +E L+++ +M     E N  ++   +   +    + +G+Q+HS V+K G+ D
Sbjct: 639 GLAQSGYFEEALQVFVRMLRTEAEVNMFTYGSAISAAASLANIKQGQQIHSMVLKTGY-D 697

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
               V+N+L+  Y+  GS+ +A + F+ +   +VISWN++++ Y+ +    +AL LF  M
Sbjct: 698 SEREVSNSLISLYAKSGSISDAWREFNDMSERNVISWNAMITGYSQHGCGMEALRLFEEM 757

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           ++C   P+  +FV  L+  S  G V  G
Sbjct: 758 KVCGIMPNHVTFVGVLSACSHIGLVKEG 785


>gi|168045266|ref|XP_001775099.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162673550|gb|EDQ60071.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 804

 Score =  330 bits (845), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 184/627 (29%), Positives = 329/627 (52%), Gaps = 6/627 (0%)

Query: 36  CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL 95
           C   P  N+Y +N  +  +   G +N A++LFD+   + +V++N++ISG       ++A 
Sbjct: 57  CGVKP--NVYITNTLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAF 114

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            L+  M    ++    TF S+LS CS+      G +IH RV+  G   +  +G+ L+ +Y
Sbjct: 115 NLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTTVGNALISMY 174

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            + G    A  +FD +  R+  +W  +  A+ E    +E L+ Y+ M  E V P+ +++ 
Sbjct: 175 AKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYM 234

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  C     L++GKQ+H+H+++  +   ++ V+ AL   Y  CG+  +A++ F+ +  
Sbjct: 235 NVLSACGSLAALEKGKQIHAHIVESEY-HSDVRVSTALTKMYMKCGAFKDAREVFECLSY 293

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            DVI+WN+++  + D   + +A   F RM      P   ++   L+  +R G +  GK+I
Sbjct: 294 RDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEI 353

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H    K G     V   +AL +MY K   ++ +  VF+  P R +    +L+        
Sbjct: 354 HARAAKDGLV-SDVRFGNALINMYSKAGSMKDARQVFDRMPKRDVVSWTTLLGRYADCDQ 412

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
           + ++   F  M+ +G+  +++T    LKA S   +   G  + +H   +K+G  +++AV+
Sbjct: 413 VVESFTTFKQMLQQGVKANKITYMCVLKACSNPVALKWG--KEIHAEVVKAGLLADLAVT 470

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +LM  Y +CG +E + +VFE +   +VV + +++ G  +NG G EAL   EVM   G+ 
Sbjct: 471 NALMSMYFKCGSVEDAIRVFEGMSMRDVVTWNTLIGGLGQNGRGLEALQRYEVMKSEGMR 530

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P+  TF+ VL+ C    +V+EG+  F  M   YGI    +HY+CM+D+L RAG L +AE+
Sbjct: 531 PNAATFVNVLSACRVCNLVEEGRRQFAFMSKDYGIVPTEKHYACMVDILARAGHLREAED 590

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           ++   P      MW +LL +CR+H N  IG R A   ++LEP +  +Y  +S  Y+  G 
Sbjct: 591 VILTIPLKPSAAMWGALLAACRIHCNVEIGERAAEHCLKLEPQNAGLYVSLSAIYAAAGM 650

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           +    ++R+    R + ++ G S IE+
Sbjct: 651 WRDVAKLRKFMKERGVKKEPGRSWIEI 677



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 129/481 (26%), Positives = 249/481 (51%), Gaps = 6/481 (1%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +  +L  C  A     G Q+H  +L  G   N+YI + L+ LY   G    A  LFD+  
Sbjct: 31  YVKLLQSCVKAKDLAVGKQVHEHILRCGVKPNVYITNTLLKLYAHCGSVNEARQLFDKFS 90

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            +++ +WN+M+  +       E   ++  M+ E +EP+  +F  ++  CS   +L+ G++
Sbjct: 91  NKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEPDKFTFVSILSACSSPAVLNWGRE 150

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  V++ G  + +  V NAL+  Y+ CGS+ +A++ FD +   D +SW ++   YA+  
Sbjct: 151 IHVRVMEAGLAN-DTTVGNALISMYAKCGSVRDARRVFDAMASRDEVSWTTLTGAYAESG 209

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              ++L+ +  M   R RPS  +++  L+       +  GKQIH ++ +  + H  V V 
Sbjct: 210 YGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAALEKGKQIHAHIVESEY-HSDVRVS 268

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +ALT MY KC   + +  VFE    R +   N+++   + SG +++A   F  M++EG+ 
Sbjct: 269 TALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIRGFVDSGQLEEAHGTFHRMLEEGVA 328

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D  T +T L A   +    L   + +H  A K G  S++    +L++ YS+ G ++ + 
Sbjct: 329 PDRATYTTVLSA--CARPGGLARGKEIHARAAKDGLVSDVRFGNALINMYSKAGSMKDAR 386

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           QVF+++P  +VV +T+++  Y+      E+    + M+Q+G+  +K+T++CVL  C++  
Sbjct: 387 QVFDRMPKRDVVSWTTLLGRYADCDQVVESFTTFKQMLQQGVKANKITYMCVLKACSNPV 446

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +K G+ +   +    G+ AD    + ++ M  + G ++ A  + +      D + W++L
Sbjct: 447 ALKWGKEIHAEVVKA-GLLADLAVTNALMSMYFKCGSVEDAIRVFEGM-SMRDVVTWNTL 504

Query: 593 L 593
           +
Sbjct: 505 I 505



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 107/402 (26%), Positives = 207/402 (51%), Gaps = 9/402 (2%)

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
           P +VL+  ++   +G + +   +  +++ C     L  GKQ+H H+++ G V  N+++ N
Sbjct: 12  PADVLQYLHR---KGPQVDSYDYVKLLQSCVKAKDLAVGKQVHEHILRCG-VKPNVYITN 67

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
            L+  Y+ CGS+ EA++ FD      V+SWN ++S YA   L  +A  LF  MQ  R  P
Sbjct: 68  TLLKLYAHCGSVNEARQLFDKFSNKSVVSWNVMISGYAHRGLAQEAFNLFTLMQQERLEP 127

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              +FV  L+  S    + +G++IH  V + G  + +  V +AL  MY KC  +  +  V
Sbjct: 128 DKFTFVSILSACSSPAVLNWGREIHVRVMEAGLANDTT-VGNALISMYAKCGSVRDARRV 186

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F++   R      +L  +   SG  +++++ +  M+ E +    +T    L A    A+ 
Sbjct: 187 FDAMASRDEVSWTTLTGAYAESGYGEESLKTYHAMLQERVRPSRITYMNVLSACGSLAAL 246

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
             G  + +H   ++S + S++ VS +L   Y +CG  + + +VFE +   +V+ + +++ 
Sbjct: 247 EKG--KQIHAHIVESEYHSDVRVSTALTKMYMKCGAFKDAREVFECLSYRDVIAWNTMIR 304

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G+  +G   EA      M++ G+ PD+ T+  VL+ C   G +  G+ + ++  +  G+ 
Sbjct: 305 GFVDSGQLEEAHGTFHRMLEEGVAPDRATYTTVLSACARPGGLARGKEI-HARAAKDGLV 363

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +D +  + +I+M  +AG +  A ++  + P   D + W++LL
Sbjct: 364 SDVRFGNALINMYSKAGSMKDARQVFDRMP-KRDVVSWTTLL 404


>gi|359481513|ref|XP_003632631.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Vitis vinifera]
          Length = 755

 Score =  329 bits (844), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 189/629 (30%), Positives = 338/629 (53%), Gaps = 8/629 (1%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           + +P L +   N  ++ + K   L  A+K+FD MP R++V++  +I+G  +      AL 
Sbjct: 93  KSHPDLTL--QNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALE 150

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
            Y +M+  G+     TF S++  CS+ G    G Q+H  VL   FG ++   + L+ +Y 
Sbjct: 151 FYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYT 210

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFC 215
           +    + ALD+F  +  R+L +W  M+  F +L    E L  + +M  +GV  PN   F 
Sbjct: 211 KSNLIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFG 270

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            +   CS  +  + G+QLH   IK G +  ++F   +L D Y+ CG L  A+  F  I  
Sbjct: 271 SVFSACSSLLQPEYGRQLHGMSIKFG-LGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGR 329

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D+++WN+I++ +A      +A+  F +M+     P   +    L   +    +Y G Q+
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQV 389

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP-GRSLECCNSLMTSLLHSG 394
           HGY+ K+G D   V V + L  MY KC+ +  ++  FE       L   N+++T+ +   
Sbjct: 390 HGYINKMGLDL-DVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMRHD 448

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             ++   +   M       D +TL+  L A + + S  +G+   +HC A+K+G   + +V
Sbjct: 449 QAEEVFRLLKLMCISQHRPDYITLTNVLGASAETVSIEIGN--QVHCYALKTGLNCDTSV 506

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           +  L+D Y++CG ++ +H++F+ + +P+VV ++S++ GY++ G G EAL + + M +  +
Sbjct: 507 TNGLIDLYAKCGSLKTAHKIFDSMINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDV 566

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ VTF+ VL  C+H G+V+EG  ++ +M+  +GI   R+H SCM+D+L RAG L++AE
Sbjct: 567 KPNHVTFVGVLTACSHVGLVEEGWKLYGTMEKEFGIAPTREHCSCMVDLLARAGCLNEAE 626

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
             + Q     D ++W +LL +C+ HGN  +G+R A  +++++P + A +  + N Y+  G
Sbjct: 627 GFIHQMAFDPDIVVWKTLLAACKTHGNVDVGKRAAENILKIDPSNSAAHVLLCNIYASKG 686

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            +E   ++R     R + +  G S IEV 
Sbjct: 687 NWEDVARLRSLMKQRGVRKVPGQSWIEVK 715



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 232/487 (47%), Gaps = 12/487 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           ST++ ++S CS       G +IH  +L      +L + + ++++Y +      A  +FD 
Sbjct: 64  STYAYLISACSYLRSLEHGKKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDA 123

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +PERN+ +W  ++  + +  +    L  Y +M   GV P+  +F  +++ CS    +  G
Sbjct: 124 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 183

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +QLH+HV+K  +   +I   NAL+  Y+    +I+A   F  +   D+ISW S+++ ++ 
Sbjct: 184 RQLHAHVLKSEF-GAHIIAQNALISMYTKSNLIIDALDVFSRMATRDLISWGSMIAGFSQ 242

Query: 291 YDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
                +AL  +F+  L +    P+   F    +  S      +G+Q+HG   K G     
Sbjct: 243 LGYELEAL-CYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGR-D 300

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           V    +L DMY KC ++  +  VF       L   N+++    + G+ K+A+  F  M  
Sbjct: 301 VFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRH 360

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           +G+  DE+T+ + L A   ++ + L     +H    K G + ++ V  +L+  Y++C  +
Sbjct: 361 QGLIPDEITVRSLLCA--CTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSEL 418

Query: 469 ELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
             +   FE++  + ++V + +I+    R+    E   +L++M      PD +T   VL  
Sbjct: 419 RDAIFFFEEMRCNADLVSWNAILTACMRHDQAEEVFRLLKLMCISQHRPDYITLTNVLGA 478

Query: 528 CNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
              +  ++ G  V   ++K+  G++ D    + +ID+  + G L  A ++        D 
Sbjct: 479 SAETVSIEIGNQVHCYALKT--GLNCDTSVTNGLIDLYAKCGSLKTAHKIFDSMI-NPDV 535

Query: 587 MMWSSLL 593
           + WSSL+
Sbjct: 536 VSWSSLI 542



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 60/228 (26%), Positives = 115/228 (50%), Gaps = 7/228 (3%)

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSC 436
           R+ +  N  +TSL       +A++ F F+  + G  L   T +  + A S   S   G  
Sbjct: 25  RAEQSSNEYITSLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHG-- 82

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           + +H   +KS    ++ +   +++ Y +C  ++ + +VF+ +P  NVV +TS++ GYS+N
Sbjct: 83  KKIHDHMLKSKSHPDLTLQNHILNMYGKCKSLKDAQKVFDAMPERNVVSWTSVIAGYSQN 142

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQ 555
           G G  AL+    M+Q G++PD+ TF  ++  C+  G +  G QL  + +KS +G     Q
Sbjct: 143 GQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQ 202

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
             + +I M  ++ ++  A ++  +     D + W S++      G E+
Sbjct: 203 --NALISMYTKSNLIIDALDVFSRM-ATRDLISWGSMIAGFSQLGYEL 247


>gi|255539110|ref|XP_002510620.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223551321|gb|EEF52807.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  328 bits (842), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 195/624 (31%), Positives = 336/624 (53%), Gaps = 8/624 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY---LYDE 100
           IY +N  I+ + K  HL  AK +FD +  +D++++N LI+G  + + P  + +   L+  
Sbjct: 43  IYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLINGYSQ-QGPTGSSFVMELFQR 101

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M +  I  +A TFS + +  SN      G Q H   + +    ++++GS L+++Y + G 
Sbjct: 102 MRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMACFYDVFVGSSLLNMYCKAGL 161

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A ++FD +PERN  TW  M+  +       E   ++  M+ E  + N  +F  ++  
Sbjct: 162 LFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMRREEEDVNEFAFTSVLSA 221

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
            ++   +D GKQ+H   +K G + V + + NALV  Y+ CGSL ++ + F+     + I+
Sbjct: 222 LAVPEFVDSGKQIHCLAVKTGLL-VFLSILNALVTMYAKCGSLDDSLQVFEMSNDKNSIT 280

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W+++++ YA       AL+LF RM      PS  + V  LN  S    V  GKQ+H Y+ 
Sbjct: 281 WSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACSDACAVEEGKQVHNYLL 340

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLGF+   +++ +AL DMY K  V E +   F       L    S++   + +G  +DA+
Sbjct: 341 KLGFE-SQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWTSMIAGYVQNGENEDAL 399

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            ++  M  EGI  +E+T+++ LKA S  A+ + G  R +H   IK G    + +  +L  
Sbjct: 400 SLYCRMQMEGILPNELTMASVLKACSNLAAFDQG--RQIHARTIKYGLGLEVTIGSALST 457

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG++E  + VF ++P  +++ + ++++G S+NG G+EAL++ E M Q+   PD VT
Sbjct: 458 MYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALELFEEMRQQDTKPDDVT 517

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ VL+ C+H G+V  G L F  M   +G+    +HY+CM+D+L RAG L +A+E ++ T
Sbjct: 518 FVNVLSACSHMGLVDSGWLYFRMMFDEFGLLPKVEHYACMVDVLSRAGKLYEAKEFIEST 577

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
                  +W  LL +CR + N  +G      LMEL   + + Y  +S  Y+ +G  E   
Sbjct: 578 TIDHGLCLWRILLGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSGIYTALGRPEDVE 637

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
           ++R     R ++++ G S IE+ S
Sbjct: 638 RVRSMMKVRGVSKEPGCSWIELKS 661



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 222/454 (48%), Gaps = 3/454 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  ++ + K+G L  A+++FD MP R+ VT+  +ISG    R   +A  +++ M 
Sbjct: 145 DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFELMR 204

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                 +   F+SVLS  +   F   G QIHC  +  G  + L I + LV +Y + G   
Sbjct: 205 REEEDVNEFAFTSVLSALAVPEFVDSGKQIHCLAVKTGLLVFLSILNALVTMYAKCGSLD 264

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +L +F+   ++N  TW+ M+  + +     + L+++++M   G+ P+  +   ++  CS
Sbjct: 265 DSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGVLNACS 324

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               ++EGKQ+H++++KLG+ +  +++  ALVD Y+  G   +A+K F+++   D++ W 
Sbjct: 325 DACAVEEGKQVHNYLLKLGF-ESQLYIMTALVDMYAKSGVTEDARKGFNYLQQPDLVLWT 383

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S+++ Y       DAL L+ RMQ+    P+  +    L   S       G+QIH    K 
Sbjct: 384 SMIAGYVQNGENEDALSLYCRMQMEGILPNELTMASVLKACSNLAAFDQGRQIHARTIKY 443

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     V + SAL+ MY KC  +E    VF   P R +   N++++ L  +G  K+A+E+
Sbjct: 444 GLGL-EVTIGSALSTMYAKCGNLEEGNIVFRRMPERDIISWNAMISGLSQNGYGKEALEL 502

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  +    D+VT    L A S     + G          + G    +     ++D  
Sbjct: 503 FEEMRQQDTKPDDVTFVNVLSACSHMGLVDSGWL-YFRMMFDEFGLLPKVEHYACMVDVL 561

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           SR G +  + +  E     + +C   I+ G  RN
Sbjct: 562 SRAGKLYEAKEFIESTTIDHGLCLWRILLGACRN 595



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 106/372 (28%), Positives = 199/372 (53%), Gaps = 13/372 (3%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +G+ LH+ +IKL      I++AN+L++FY+ C  L +AK  FD I   DVISWN +++
Sbjct: 23  LQKGRALHAQIIKLASSSSCIYLANSLINFYAKCCHLPKAKLVFDRIHNKDVISWNCLIN 82

Query: 287 IYADYDLIFDA--LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
            Y+       +  +ELF RM+     P+  +F      AS   +++FG+Q H    K+  
Sbjct: 83  GYSQQGPTGSSFVMELFQRMRADNILPNAHTFSGIFTAASNLSSIFFGQQAHAVAIKMAC 142

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
            +  V V S+L +MY K  ++  +  VF+  P R+     ++++         +A E+F 
Sbjct: 143 FY-DVFVGSSLLNMYCKAGLLFEAREVFDRMPERNEVTWATMISGYAIQRLAGEAFEVFE 201

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  E   ++E   ++ L AL+V    + G  + +HC A+K+G    +++  +L+  Y++
Sbjct: 202 LMRREEEDVNEFAFTSVLSALAVPEFVDSG--KQIHCLAVKTGLLVFLSILNALVTMYAK 259

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG ++ S QVFE     N + +++++ GY+++G   +AL +   M   G+ P + T + V
Sbjct: 260 CGSLDDSLQVFEMSNDKNSITWSAMITGYAQSGDSHKALKLFSRMHFAGINPSEFTLVGV 319

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE---LLQQTP 581
           L  C+ +  V+EG+ V N +  + G ++     + ++DM  ++G+ + A +    LQQ  
Sbjct: 320 LNACSDACAVEEGKQVHNYLLKL-GFESQLYIMTALVDMYAKSGVTEDARKGFNYLQQP- 377

Query: 582 GGGDCMMWSSLL 593
              D ++W+S++
Sbjct: 378 ---DLVLWTSMI 386


>gi|297738694|emb|CBI27939.3| unnamed protein product [Vitis vinifera]
          Length = 764

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 197/624 (31%), Positives = 338/624 (54%), Gaps = 7/624 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +++SS   ++ +VK   L  A+++ +EMP +D+  +N  +S        ++A+ L+ 
Sbjct: 22  PDSHLWSS--LVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQEAVQLFY 79

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M    I+ +   F+S++S  ++ G    G  IH  V   GF  ++ I +  V +YM+  
Sbjct: 80  LMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGFESDILISNAFVTMYMKTQ 139

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                   F  +   NLA+ N +L  FC+    D+  R+  ++  EG EPN  +F  +++
Sbjct: 140 SVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMYTFISILK 199

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+EGK +H  VIK G ++ +  + N+LV+ Y+ CGS   A K F  IP  DV+
Sbjct: 200 TCASKGDLNEGKAIHGQVIKSG-INPDSHLWNSLVNVYAKCGSANYACKVFGEIPERDVV 258

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW ++++ +   +     L +F +M      P++ +F+  L   S   +V  GKQ+H  +
Sbjct: 259 SWTALITGFVA-EGYGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQI 317

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K   D G+  V +AL DMY K   +E +  +F     R L     ++      G  + A
Sbjct: 318 VKNSLD-GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKA 376

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           V+ F  M  EG+  +E TL+++L   S  A+  L S R LH  AIK+G   ++ V+ +L+
Sbjct: 377 VKCFIQMQREGVKPNEFTLASSLSGCSRIAT--LDSGRQLHSMAIKAGQSGDMFVASALV 434

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG +E +  VF+ + S + V + +I+ GYS++G G +AL   E M+  G +PD+V
Sbjct: 435 DMYAKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEV 494

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL+ C+H G+++EG+  FNS+  +YGI    +HY+CM+D+LGRAG   + E  +++
Sbjct: 495 TFIGVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEE 554

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
                + ++W ++L +C++HGN   G R A  L ELEP   + Y  +SN ++  G ++  
Sbjct: 555 MKLTSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDV 614

Query: 640 MQIRETALARKLTRDIGHSLIEVN 663
             +R     R + ++ G S +EVN
Sbjct: 615 TNVRALMSTRGVKKEPGCSWVEVN 638



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/467 (22%), Positives = 224/467 (47%), Gaps = 7/467 (1%)

Query: 135 RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
           RV+  G   + ++ S LV++Y++      A  + +E+P +++  WN  L +        E
Sbjct: 14  RVIKNGICPDSHLWSSLVNVYVKCESLQCARQVLEEMPIQDVQQWNQKLSSANSPYPLQE 73

Query: 195 VLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
            ++++  M+   +  N   F  ++   +       G+ +H+ V K G+ + +I ++NA V
Sbjct: 74  AVQLFYLMRHTRIRLNQFIFASLISAAASLGDNHYGESIHACVCKYGF-ESDILISNAFV 132

Query: 255 DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
             Y    S+    + F  + ++++ S N+++S + D +       +  ++ +    P++ 
Sbjct: 133 TMYMKTQSVENGWQFFKAMMIENLASRNNLLSGFCDTETCDQGPRILIQLLVEGFEPNMY 192

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           +F+  L   +  G++  GK IHG V K G +  S H+ ++L ++Y KC     +  VF  
Sbjct: 193 TFISILKTCASKGDLNEGKAIHGQVIKSGINPDS-HLWNSLVNVYAKCGSANYACKVFGE 251

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
            P R +    +L+T  +  G     + +F  M+ EG   +  T  + L++ S  +  +LG
Sbjct: 252 IPERDVVSWTALITGFVAEG-YGSGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLG 310

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS 494
             + +H   +K+  + N  V  +L+D Y++   +E +  +F ++   ++  +T I+ GY+
Sbjct: 311 --KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYA 368

Query: 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
           ++G G +A+     M + G+ P++ T    L+GC+    +  G+ + +SM    G   D 
Sbjct: 369 QDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMAIKAGQSGDM 427

Query: 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
              S ++DM  + G ++ AE +        D + W++++     HG 
Sbjct: 428 FVASALVDMYAKCGCVEDAEVVFDGLV-SRDTVSWNTIICGYSQHGQ 473


>gi|224077074|ref|XP_002305120.1| predicted protein [Populus trichocarpa]
 gi|222848084|gb|EEE85631.1| predicted protein [Populus trichocarpa]
          Length = 786

 Score =  328 bits (841), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 196/624 (31%), Positives = 348/624 (55%), Gaps = 14/624 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           + +N  +  + K G    A+ LFD +P R +V++N L S         +A+ L+ +MV  
Sbjct: 46  FVANSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLS 105

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           GI+ +  + SS+++VC+      +G +IH  ++ LG+  + +  + LVD+Y ++G    A
Sbjct: 106 GIRPNEFSLSSMINVCTGLEDSVQGRKIHGYLIKLGYDSDAFSANALVDMYAKVGILEDA 165

Query: 165 LDLFDELPERNLATWNLMLRAFCELS----RPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
             +FDE+ + ++ +WN ++ A C L     R  E+LR  NK    G+ PN  +    ++ 
Sbjct: 166 SSVFDEIAKPDIVSWNAII-AGCVLHEYHHRALELLREMNK---SGMCPNMFTLSSALKA 221

Query: 221 CSIGMLLDE-GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           C+ GM L E G+QLHS +IK+  +  + F+   L+D YS C S+ +A+  F  +P  D+I
Sbjct: 222 CA-GMALRELGRQLHSSLIKMD-MGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMI 279

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WN+++S ++  +   +A  LF  M       +  +    L   +     Y  +QIH   
Sbjct: 280 AWNAVISGHSQNEEDEEAASLFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCRQIHALS 339

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF+  + +V ++L D YGKC  +E +  VFE +P   L    SL+T+    G  ++A
Sbjct: 340 LKSGFEFDN-YVVNSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEA 398

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + ++  M D GI  D    S+ L A +  ++   G  + +H   +K GF S+I    SL+
Sbjct: 399 LRLYLEMQDRGIKPDSFVCSSLLNACASLSAYEQG--KQVHVHILKFGFMSDIFAGNSLV 456

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           + Y++CG IE +   F +IP   +V +++++ G +++G G+EAL + + M++ G+ P+ +
Sbjct: 457 NMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGVPPNHI 516

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           T + VL  CNH+G+V E +  FNSMK ++GI+  ++HY+CMID+LGRAG L+ A EL+ +
Sbjct: 517 TLVSVLCACNHAGLVAEAKHYFNSMKILFGIEPMQEHYACMIDLLGRAGKLEAAMELVNK 576

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   + ++W +LL + R+H N  +G + A +L+ LEP     +  ++N Y+ +G ++  
Sbjct: 577 MPFQANALVWGALLGAARIHKNIDLGEQAAEMLLALEPEKSGTHVLLANIYASVGMWDKV 636

Query: 640 MQIRETALARKLTRDIGHSLIEVN 663
            ++R      K+ ++ G S +EV 
Sbjct: 637 ARVRRLMKDGKVKKEPGMSWLEVK 660



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 155/498 (31%), Positives = 259/498 (52%), Gaps = 10/498 (2%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           GIK +   F SVL  C+       G Q+H  V+  GF  + ++ + LV LY + G    A
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGFDSDEFVANSLVILYAKCGGFGDA 64

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             LFD +P+R++ +WN +   +       E + +++ M   G+ PN  S   M+  C+  
Sbjct: 65  RSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTGL 124

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
               +G+++H ++IKLG+ D + F ANALVD Y+  G L +A   FD I   D++SWN+I
Sbjct: 125 EDSVQGRKIHGYLIKLGY-DSDAFSANALVDMYAKVGILEDASSVFDEIAKPDIVSWNAI 183

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++    ++    ALEL   M      P++ +    L   +       G+Q+H  + K+  
Sbjct: 184 IAGCVLHEYHHRALELLREMNKSGMCPNMFTLSSALKACAGMALRELGRQLHSSLIKMDM 243

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD--AVEM 402
              S  +   L DMY KCN ++ +  VF+  P R +   N++++   HS N +D  A  +
Sbjct: 244 GSDSF-LGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISG--HSQNEEDEEAASL 300

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EGIG ++ TLST LK+++ +  AN   CR +H  ++KSGFE +  V  SL+D Y
Sbjct: 301 FPLMHTEGIGFNQTTLSTVLKSIA-ALQANY-MCRQIHALSLKSGFEFDNYVVNSLIDTY 358

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CGH+E + +VFE+ P  ++V FTS++  Y+++G G EAL +   M  RG+ PD     
Sbjct: 359 GKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIKPDSFVCS 418

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L  C      ++G+ V   +   +G  +D    + +++M  + G ++ A     + P 
Sbjct: 419 SLLNACASLSAYEQGKQVHVHILK-FGFMSDIFAGNSLVNMYAKCGSIEDASCAFSRIPV 477

Query: 583 GGDCMMWSSLLRSCRVHG 600
            G  + WS+++     HG
Sbjct: 478 RG-IVSWSAMIGGLAQHG 494



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 132/467 (28%), Positives = 238/467 (50%), Gaps = 23/467 (4%)

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G++ N  +F  +++ C++   L  GKQ+H  V+  G+ D + FVAN+LV  Y+ CG   +
Sbjct: 5   GIKCNEFAFPSVLKACTVTKDLVLGKQVHGIVVVTGF-DSDEFVANSLVILYAKCGGFGD 63

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+  FD IP   V+SWN++ S Y   D+  +A+ LF  M L   RP+  S    +N  + 
Sbjct: 64  ARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIRPNEFSLSSMINVCTG 123

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
             +   G++IHGY+ KLG+D  +    +AL DMY K  ++E + +VF+      +   N+
Sbjct: 124 LEDSVQGRKIHGYLIKLGYDSDAFSA-NALVDMYAKVGILEDASSVFDEIAKPDIVSWNA 182

Query: 386 LMTS-LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           ++   +LH  + + A+E+   M   G+  +  TLS+ LKA +  A   LG  R LH   I
Sbjct: 183 IIAGCVLHEYHHR-ALELLREMNKSGMCPNMFTLSSALKACAGMALRELG--RQLHSSLI 239

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           K    S+  +   L+D YS+C  ++ +  VF+ +P  +++ + ++++G+S+N    EA  
Sbjct: 240 KMDMGSDSFLGVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAAS 299

Query: 505 MLEVMIQRGLIPDKVTFLCVL---AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           +  +M   G+  ++ T   VL   A    + M +  Q+   S+KS  G + D    + +I
Sbjct: 300 LFPLMHTEGIGFNQTTLSTVLKSIAALQANYMCR--QIHALSLKS--GFEFDNYVVNSLI 355

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE----P 617
           D  G+ G ++ A  + +++P   D ++++SL+ +    G    G     + +E++     
Sbjct: 356 DTYGKCGHVEDATRVFEESP-IVDLVLFTSLVTAYAQDGQ---GEEALRLYLEMQDRGIK 411

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI--GHSLIEV 662
            D  V S + N  + +  +E   Q+    L      DI  G+SL+ +
Sbjct: 412 PDSFVCSSLLNACASLSAYEQGKQVHVHILKFGFMSDIFAGNSLVNM 458



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 38/146 (26%), Positives = 76/146 (52%), Gaps = 4/146 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I++ N  ++ + K G +  A   F  +P R +V+++ +I G  +  + K+AL L+ +M+
Sbjct: 448 DIFAGNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQML 507

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGP 160
             G+  +  T  SVL  C++AG   E  + +   + + FG+       + ++DL  R G 
Sbjct: 508 KVGVPPNHITLVSVLCACNHAGLVAEA-KHYFNSMKILFGIEPMQEHYACMIDLLGRAGK 566

Query: 161 SVRALDLFDELP-ERNLATWNLMLRA 185
              A++L +++P + N   W  +L A
Sbjct: 567 LEAAMELVNKMPFQANALVWGALLGA 592


>gi|356503704|ref|XP_003520645.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 855

 Score =  327 bits (839), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 199/658 (30%), Positives = 344/658 (52%), Gaps = 15/658 (2%)

Query: 12  TITTLAPTCTSIVPLS-----SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           T   L   CTSI  L         +L S CQP+  L     N  ++ + K G L  A+K 
Sbjct: 159 TYGNLILACTSIRSLKYGKKIHDHILKSNCQPDLVLQ----NHILNMYGKCGSLKDARKA 214

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD M  R++V++ ++ISG  +      A+ +Y +M+  G      TF S++  C  AG  
Sbjct: 215 FDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQSGYFPDPLTFGSIIKACCIAGDI 274

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G Q+H  V+  G+  +L   + L+ +Y R G  V A D+F  +  ++L +W  M+  F
Sbjct: 275 DLGRQLHGHVIKSGYDHHLIAQNALISMYTRFGQIVHASDVFTMISTKDLISWASMITGF 334

Query: 187 CELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            +L    E L ++  M  +G  +PN   F  +   C   +  + G+Q+H    K G +  
Sbjct: 335 TQLGYEIEALYLFRDMFRQGFYQPNEFIFGSVFSACRSLLEPEFGRQIHGMCAKFG-LGR 393

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N+F   +L D Y+  G L  A ++F  I   D++SWN+I++ ++D   + +A+  F +M 
Sbjct: 394 NVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVSWNAIIAAFSDSGDVNEAIYFFCQMM 453

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                P   +F+  L        +  G QIH Y+ K+G D  +    S LT MY KC+ +
Sbjct: 454 HTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLT-MYTKCSNL 512

Query: 366 ESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
             +  VF+  +   +L   N+++++ L      +   +F  M+      D +T++T L  
Sbjct: 513 HDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILGT 572

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +  AS  +G+   +HC ++KSG   +++VS  L+D Y++CG ++ +  VF    +P++V
Sbjct: 573 CAELASLEVGN--QVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIV 630

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            ++S++ GY++ G+G EAL++  +M   G+ P++VT+L VL+ C+H G+V+EG   +N+M
Sbjct: 631 SWSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTM 690

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           +   GI   R+H SCM+D+L RAG L +AE  +++     D  MW +LL SC+ HGN  I
Sbjct: 691 EIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKMGFNPDITMWKTLLASCKTHGNVDI 750

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
             R A  +++L+P + A    +SN ++ +G ++   ++R       + +  G S I V
Sbjct: 751 AERAAENILKLDPSNSAALVLLSNIHASVGNWKEVARLRNLMKQMGVQKVPGQSWIAV 808



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 135/513 (26%), Positives = 248/513 (48%), Gaps = 15/513 (2%)

Query: 87  KFRHPKQALYLYD-EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
           K RH ++AL  ++    +  I+  +ST+ +++  C++      G +IH  +L      +L
Sbjct: 133 KQRHYREALDTFNFHPKNSSIQLESSTYGNLILACTSIRSLKYGKKIHDHILKSNCQPDL 192

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
            + + ++++Y + G    A   FD +  RN+ +W +M+  + +  + ++ + MY +M   
Sbjct: 193 VLQNHILNMYGKCGSLKDARKAFDTMQLRNVVSWTIMISGYSQNGQENDAIIMYIQMLQS 252

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G  P+ L+F  +++ C I   +D G+QLH HVIK G+ D ++   NAL+  Y+  G ++ 
Sbjct: 253 GYFPDPLTFGSIIKACCIAGDIDLGRQLHGHVIKSGY-DHHLIAQNALISMYTRFGQIVH 311

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF---FRMQLCRKRPSIRSFVEFLNF 322
           A   F  I   D+ISW S+++ +       +AL LF   FR      +P+   F    + 
Sbjct: 312 ASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGF--YQPNEFIFGSVFSA 369

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
                   FG+QIHG   K G    +V    +L DMY K   + S++  F       L  
Sbjct: 370 CRSLLEPEFGRQIHGMCAKFGLGR-NVFAGCSLCDMYAKFGFLPSAIRAFYQIESPDLVS 428

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            N+++ +   SG++ +A+  F  M+  G+  D +T  + L A     + N G+   +H  
Sbjct: 429 WNAIIAAFSDSGDVNEAIYFFCQMMHTGLMPDGITFLSLLCACGSPVTINQGT--QIHSY 486

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGRE 501
            IK G +   AV  SL+  Y++C ++  +  VF+ +  + N+V + +I++   ++    E
Sbjct: 487 IIKIGLDKEAAVCNSLLTMYTKCSNLHDAFNVFKDVSENANLVSWNAILSACLQHKQAGE 546

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCM 560
              + ++M+     PD +T   +L  C     ++ G  V   S+KS  G+  D    + +
Sbjct: 547 VFRLFKLMLFSENKPDNITITTILGTCAELASLEVGNQVHCFSVKS--GLVVDVSVSNRL 604

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           IDM  + G L  A ++   T    D + WSSL+
Sbjct: 605 IDMYAKCGSLKHARDVFGSTQ-NPDIVSWSSLI 636



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 67/292 (22%), Positives = 138/292 (47%), Gaps = 9/292 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           M+ T L+P   T  +L   C S V ++    + SY  +          N  +  + K  +
Sbjct: 452 MMHTGLMPDGITFLSLLCACGSPVTINQGTQIHSYIIKIGLDKEAAVCNSLLTMYTKCSN 511

Query: 60  LNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           L+ A  +F ++    ++V++N ++S C + +   +   L+  M+    K    T +++L 
Sbjct: 512 LHDAFNVFKDVSENANLVSWNAILSACLQHKQAGEVFRLFKLMLFSENKPDNITITTILG 571

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C+       G Q+HC  +  G  +++ + + L+D+Y + G    A D+F      ++ +
Sbjct: 572 TCAELASLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGSLKHARDVFGSTQNPDIVS 631

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV- 237
           W+ ++  + +     E L ++  MK  GV+PN +++  ++  CS   L++EG   ++ + 
Sbjct: 632 WSSLIVGYAQFGLGHEALNLFRMMKNLGVQPNEVTYLGVLSACSHIGLVEEGWHFYNTME 691

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAK---KSFDFIPVDDVISWNSIVS 286
           I+LG       V+  +VD  +  G L EA+   K   F P  D+  W ++++
Sbjct: 692 IELGIPPTREHVS-CMVDLLARAGCLYEAENFIKKMGFNP--DITMWKTLLA 740


>gi|15232837|ref|NP_186850.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75193830|sp|Q9S7F4.1|PP206_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At2g01510
 gi|6091739|gb|AAF03451.1|AC010797_27 hypothetical protein [Arabidopsis thaliana]
 gi|6513930|gb|AAF14834.1|AC011664_16 hypothetical protein [Arabidopsis thaliana]
 gi|332640228|gb|AEE73749.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 825

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 195/631 (30%), Positives = 335/631 (53%), Gaps = 13/631 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S+N  I   VK+G ++SA+ LFD MP R +VT+ +L+    +  H  +A  L+ 
Sbjct: 75  PHKNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFR 134

Query: 100 EMV--SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           +M   S        TF+++L  C++A       Q+H   + LGF  N ++   + ++ ++
Sbjct: 135 QMCRSSSCTLPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFL--TVSNVLLK 192

Query: 158 MGPSVRALDL----FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
               VR LDL    F+E+PE++  T+N ++  + +     E + ++ KM+  G +P+  +
Sbjct: 193 SYCEVRRLDLACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFT 252

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  +++          G+QLH+  +  G+   +  V N ++DFYS    ++E +  FD +
Sbjct: 253 FSGVLKAVVGLHDFALGQQLHALSVTTGF-SRDASVGNQILDFYSKHDRVLETRMLFDEM 311

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
           P  D +S+N ++S Y+  D    +L  F  MQ          F   L+ A+   ++  G+
Sbjct: 312 PELDFVSYNVVISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGR 371

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           Q+H     L      +HV ++L DMY KC + E +  +F+S P R+     +L++  +  
Sbjct: 372 QLHCQAL-LATADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQK 430

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G     +++F  M    +  D+ T +T LKA +  AS  LG  + LH   I+SG   N+ 
Sbjct: 431 GLHGAGLKLFTKMRGSNLRADQSTFATVLKASASFASLLLG--KQLHAFIIRSGNLENVF 488

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
               L+D Y++CG I+ + QVFE++P  N V + ++++ ++ NG G  A+     MI+ G
Sbjct: 489 SGSGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESG 548

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           L PD V+ L VL  C+H G V++G   F +M  +YGI   ++HY+CM+D+LGR G   +A
Sbjct: 549 LQPDSVSILGVLTACSHCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEA 608

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSE 632
           E+L+ + P   D +MWSS+L +CR+H N+ +  R A  L  +E + D A Y  +SN Y+ 
Sbjct: 609 EKLMDEMPFEPDEIMWSSVLNACRIHKNQSLAERAAEKLFSMEKLRDAAAYVSMSNIYAA 668

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            GE+E    +++    R + +   +S +EVN
Sbjct: 669 AGEWEKVRDVKKAMRERGIKKVPAYSWVEVN 699



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 133/504 (26%), Positives = 242/504 (48%), Gaps = 35/504 (6%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYC-----QPNPQLNIYSSNRTIDDFVKSGHLN 61
           LP   T TTL P C   VP ++   + ++        NP L +  SN  +  + +   L+
Sbjct: 144 LPDHVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNPFLTV--SNVLLKSYCEVRRLD 201

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            A  LF+E+P +D VT+N LI+G  K     ++++L+ +M   G + S  TFS VL    
Sbjct: 202 LACVLFEEIPEKDSVTFNTLITGYEKDGLYTESIHLFLKMRQSGHQPSDFTFSGVLKAVV 261

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
               +  G Q+H   ++ GF  +  +G+ ++D Y +    +    LFDE+PE +  ++N+
Sbjct: 262 GLHDFALGQQLHALSVTTGFSRDASVGNQILDFYSKHDRVLETRMLFDEMPELDFVSYNV 321

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++ ++ +  + +  L  + +M+  G +     F  M+   +    L  G+QLH   + L 
Sbjct: 322 VISSYSQADQYEASLHFFREMQCMGFDRRNFPFATMLSIAANLSSLQMGRQLHCQAL-LA 380

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
             D  + V N+LVD Y+ C    EA+  F  +P    +SW +++S Y    L    L+LF
Sbjct: 381 TADSILHVGNSLVDMYAKCEMFEEAELIFKSLPQRTTVSWTALISGYVQKGLHGAGLKLF 440

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
            +M+    R    +F   L  ++   ++  GKQ+H ++ + G +  +V   S L DMY K
Sbjct: 441 TKMRGSNLRADQSTFATVLKASASFASLLLGKQLHAFIIRSG-NLENVFSGSGLVDMYAK 499

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  I+ +V VFE  P R+    N+L+++   +G+ + A+  F  M++ G+  D V++   
Sbjct: 500 CGSIKDAVQVFEEMPDRNAVSWNALISAHADNGDGEAAIGAFAKMIESGLQPDSVSILGV 559

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVS------------CSLMDAYSRCGHIE 469
           L A S             HC  ++ G E   A+S              ++D   R G   
Sbjct: 560 LTACS-------------HCGFVEQGTEYFQAMSPIYGITPKKKHYACMLDLLGRNGRFA 606

Query: 470 LSHQVFEKIP-SPNVVCFTSIMNG 492
            + ++ +++P  P+ + ++S++N 
Sbjct: 607 EAEKLMDEMPFEPDEIMWSSVLNA 630



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 31/142 (21%), Positives = 59/142 (41%), Gaps = 33/142 (23%)

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
           TL+ L   + A     R +    IK+GF+++   S  +++   R G +  + +V++++P 
Sbjct: 17  TLRQLRQPSPATFLDTRRVDARIIKTGFDTDTCRSNFIVEDLLRRGQVSAARKVYDEMPH 76

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI------------------------- 515
            N V   ++++G+ + G    A D+ + M  R ++                         
Sbjct: 77  KNTVSTNTMISGHVKTGDVSSARDLFDAMPDRTVVTWTILMGWYARNSHFDEAFKLFRQM 136

Query: 516 --------PDKVTFLCVLAGCN 529
                   PD VTF  +L GCN
Sbjct: 137 CRSSSCTLPDHVTFTTLLPGCN 158


>gi|115475988|ref|NP_001061590.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|38423978|dbj|BAD01706.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|38637396|dbj|BAD03655.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|113623559|dbj|BAF23504.1| Os08g0340900 [Oryza sativa Japonica Group]
 gi|215686971|dbj|BAG90841.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 819

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 190/621 (30%), Positives = 326/621 (52%), Gaps = 4/621 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y     I+ + K G ++ A  +F  +P R  VT+N +I+G  +      AL L+D M 
Sbjct: 154 NVYVGTALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMG 213

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++      +S +S CS  GF   G QIH          +  + + L+DLY +     
Sbjct: 214 IEGVRPDRFVLASAVSACSALGFLEGGRQIHGYAYRSATETDTSVINVLIDLYCKCSRLS 273

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD +  RNL +W  M+  + + S   E + M+  M   G +P+G +   ++  C 
Sbjct: 274 AARKLFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCG 333

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               + +G+Q+H+HVIK   ++ + +V NAL+D Y+ C  L EA+  FD +  DD IS+N
Sbjct: 334 SLAAIWQGRQIHAHVIKAD-LEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYN 392

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y+    + +A+ +F RM+    RPS+ +FV  L  +S    +   KQIHG + K 
Sbjct: 393 AMIEGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKS 452

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     ++  SAL D+Y KC+++  +  VF     + +   NS++     +   ++A+++
Sbjct: 453 GTSL-DLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKL 511

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  ++  G+  +E T    +   S  AS   G  +  H   IK+G +++  VS +L+D Y
Sbjct: 512 FNQLLLSGMAPNEFTFVALVTVASTLASMFHG--QQFHAWIIKAGVDNDPHVSNALIDMY 569

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG I+    +FE     +V+C+ S++  Y+++G   EAL +  +M +  + P+ VTF+
Sbjct: 570 AKCGFIKEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFV 629

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C H+G V EG   FNSMKS Y I+   +HY+ ++++ GR+G L  A+E +++ P 
Sbjct: 630 GVLSACAHAGFVGEGLNHFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPI 689

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                +W SLL +C + GN  IGR  A + +  +P D   Y  +SN Y+  G +     +
Sbjct: 690 KPAAAVWRSLLSACHLFGNAEIGRYAAEMALLADPTDSGPYVLLSNIYASKGLWADVHNL 749

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R+   +    ++ G S IEV 
Sbjct: 750 RQQMDSSGTVKETGCSWIEVT 770



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 144/576 (25%), Positives = 282/576 (48%), Gaps = 9/576 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ +N  +  +   G L  A+ LFD MP R++V++  +IS   +      A+ L+    
Sbjct: 52  DLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGRDDCAISLFVAFQ 111

Query: 103 SHGIK-ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +  +    +SVL  C+ +   + G Q+H   + L    N+Y+G+ L++LY ++G  
Sbjct: 112 KASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLDLDANVYVGTALINLYAKLGCM 171

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A+ +F  LP R   TWN ++  + ++      L ++++M  EGV P+       V  C
Sbjct: 172 DEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVRPDRFVLASAVSAC 231

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S    L+ G+Q+H +  +    + +  V N L+D Y  C  L  A+K FD +   +++SW
Sbjct: 232 SALGFLEGGRQIHGYAYRSA-TETDTSVINVLIDLYCKCSRLSAARKLFDCMEYRNLVSW 290

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +++S Y       +A+ +F+ M     +P   +    LN       ++ G+QIH +V K
Sbjct: 291 TTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILNSCGSLAAIWQGRQIHAHVIK 350

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              +    +V++AL DMY KC  +  + AVF++         N+++     + ++ +AV 
Sbjct: 351 ADLE-ADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMIEGYSKNRDLAEAVN 409

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASA-NLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           +F  M    +     +L T +  L VS+S   +   + +H   IKSG   ++  + +L+D
Sbjct: 410 IFQRMRFFSL---RPSLLTFVSLLGVSSSQLAIELSKQIHGLIIKSGTSLDLYAASALID 466

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+C  +  +  VF  +   ++V + S++ G+++N  G EA+ +   ++  G+ P++ T
Sbjct: 467 VYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQLLLSGMAPNEFT 526

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ ++   +    +  GQ  F++     G+D D    + +IDM  + G + +   L + T
Sbjct: 527 FVALVTVASTLASMFHGQ-QFHAWIIKAGVDNDPHVSNALIDMYAKCGFIKEGRMLFEST 585

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
             G D + W+S++ +   HG+     +V  ++ E E
Sbjct: 586 C-GEDVICWNSMITTYAQHGHAEEALQVFRLMGEAE 620



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 125/505 (24%), Positives = 238/505 (47%), Gaps = 21/505 (4%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH R    G   +L++ + L+  Y  +G    A  LFD +P RNL +W  ++  + +  R
Sbjct: 40  IHARATVAGRLDDLFLTNLLLRGYSNLGRLRDARHLFDRMPHRNLVSWGSVISMYTQHGR 99

Query: 192 PDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            D  + ++   +    E PN      ++R C+    +  G+Q+H   +KL  +D N++V 
Sbjct: 100 DDCAISLFVAFQKASCEVPNEFLLASVLRACTQSKAVSLGEQVHGIAVKLD-LDANVYVG 158

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            AL++ Y+  G + EA   F  +PV   ++WN++++ YA       ALELF RM +   R
Sbjct: 159 TALINLYAKLGCMDEAMLVFHALPVRTPVTWNTVITGYAQIGCGGVALELFDRMGIEGVR 218

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P        ++  S  G +  G+QIHGY  +   +     V + L D+Y KC+ + ++  
Sbjct: 219 PDRFVLASAVSACSALGFLEGGRQIHGYAYRSATE-TDTSVINVLIDLYCKCSRLSAARK 277

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F+    R+L    ++++  + +    +A+ MF  M   G   D    ++ L   S  + 
Sbjct: 278 LFDCMEYRNLVSWTTMISGYMQNSFNAEAITMFWNMTQAGWQPDGFACTSILN--SCGSL 335

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           A +   R +H   IK+  E++  V  +L+D Y++C H+  +  VF+ +   + + + +++
Sbjct: 336 AAIWQGRQIHAHVIKADLEADEYVKNALIDMYAKCEHLTEARAVFDALAEDDAISYNAMI 395

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            GYS+N    EA+++ + M    L P  +TF+ +L        V   QL     K ++G+
Sbjct: 396 EGYSKNRDLAEAVNIFQRMRFFSLRPSLLTFVSLLG-------VSSSQLAIELSKQIHGL 448

Query: 551 ------DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL--RSCRVHGNE 602
                   D    S +ID+  +  +++ A+ +        D ++W+S++   +    G E
Sbjct: 449 IIKSGTSLDLYAASALIDVYSKCSLVNDAKTVFNMLH-YKDMVIWNSMIFGHAQNEQGEE 507

Query: 603 IIGRRVANILMELEPVDFAVYSQVS 627
            I      +L  + P +F   + V+
Sbjct: 508 AIKLFNQLLLSGMAPNEFTFVALVT 532



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 58/247 (23%), Positives = 127/247 (51%), Gaps = 3/247 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++Y+++  ID + K   +N AK +F+ +  +DMV +N +I G  +    ++A+ L++++
Sbjct: 456 LDLYAASALIDVYSKCSLVNDAKTVFNMLHYKDMVIWNSMIFGHAQNEQGEEAIKLFNQL 515

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +  G+  +  TF ++++V S       G Q H  ++  G   + ++ + L+D+Y + G  
Sbjct: 516 LLSGMAPNEFTFVALVTVASTLASMFHGQQFHAWIIKAGVDNDPHVSNALIDMYAKCGFI 575

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
                LF+     ++  WN M+  + +    +E L+++  M    VEPN ++F  ++  C
Sbjct: 576 KEGRMLFESTCGEDVICWNSMITTYAQHGHAEEALQVFRLMGEAEVEPNYVTFVGVLSAC 635

Query: 222 SIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           +    + EG   H + +K  + ++  I    ++V+ +   G L  AK+  + +P+    +
Sbjct: 636 AHAGFVGEGLN-HFNSMKSNYDIEPGIEHYASVVNLFGRSGKLHAAKEFIERMPIKPAAA 694

Query: 281 -WNSIVS 286
            W S++S
Sbjct: 695 VWRSLLS 701


>gi|359475368|ref|XP_003631669.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 891

 Score =  327 bits (838), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 182/623 (29%), Positives = 343/623 (55%), Gaps = 9/623 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY-LYDEM 101
           +I+ S R ++ +   G ++ ++  FD++P +D+  +N +IS      H  +A+   Y  +
Sbjct: 150 SIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGHFHEAIGCFYQLL 209

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +   I+    TF  VL  C   G   +G +IHC    LGF  N+++ + L+ +Y R G +
Sbjct: 210 LVSEIRPDFYTFPPVLKAC---GTLVDGRKIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 266

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LFD++P R++ +WN M+    +     + L + ++M+ EG++ N ++   ++  C
Sbjct: 267 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC 326

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                +     +H +VIK G ++ ++FV+NAL++ Y+  G+L +A+K+F  + + DV+SW
Sbjct: 327 PQLGDISTAMLIHLYVIKHG-LEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSW 385

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NSI++ Y   D    A   F +MQL   +P + + V   +  +++ +    + +HG++ +
Sbjct: 386 NSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMR 445

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G+    V + +A+ DMY K  +++S+  VFE  P + +   N+L+T    +G   +A+E
Sbjct: 446 RGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISWNTLITGYAQNGLASEAIE 505

Query: 402 MFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++  M + + I  ++ T  + L A +   +   G    +H   IK+    ++ V+  L+D
Sbjct: 506 VYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG--MKIHGRVIKTNLHLDVFVATCLID 563

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +CG +  +  +F ++P  + V + +I++ +  +G   + L +   M+  G+ PD VT
Sbjct: 564 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 623

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ +L+ C+HSG V+EG+  F  M+  YGI    +HY CM+D+LGRAG L+ A + ++  
Sbjct: 624 FVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDM 682

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D  +W +LL +CR+HGN  +G+  ++ L E++  +   Y  +SN Y+ +G++E   
Sbjct: 683 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVD 742

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
           ++R  A  R L +  G S IEVN
Sbjct: 743 KVRSLARERGLKKTPGWSTIEVN 765



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 134/473 (28%), Positives = 243/473 (51%), Gaps = 12/473 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q N++ +   I  + + G    A+ LFD+MP RDM ++N +ISG  +  +  QAL + DE
Sbjct: 247 QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE 306

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   GIK +  T  S+L VC   G  +  + IH  V+  G   +L++ + L+++Y + G 
Sbjct: 307 MRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGN 366

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A   F ++   ++ +WN ++ A+ +   P      + KM+  G +P+ L+   +   
Sbjct: 367 LEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASI 426

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
            +        + +H  +++ GW+  ++ + NA+VD Y+  G L  A K F+ IPV DVIS
Sbjct: 427 VAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVIS 486

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           WN++++ YA   L  +A+E++  M+ C++  P+  ++V  L   +  G +  G +IHG V
Sbjct: 487 WNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRV 546

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K    H  V V + L D+YGKC  +  ++++F   P  S    N++++     G+ +  
Sbjct: 547 IKTNL-HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKT 605

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC--RLLHCCAIKSGFESNIAVSCS 457
           +++FG M+DEG+  D VT  + L A S S     G    RL+    IK   +      C 
Sbjct: 606 LKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKH---YGC- 661

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDML 506
           ++D   R G++E+++   + +P  P+   + +++     +G   +G+ A D L
Sbjct: 662 MVDLLGRAGYLEMAYDFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRL 714



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 121/476 (25%), Positives = 242/476 (50%), Gaps = 18/476 (3%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H  ++  G   +++I + LV+LY  +G    +   FD++P++++  WN M+ A+     
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVHNGH 197

Query: 192 PDEVLR-MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             E +   Y  +    + P+  +F  +++ C  G L+D G+++H    KLG+   N+FVA
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC--GTLVD-GRKIHCWAFKLGF-QWNVFVA 253

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +L+  YS  G    A+  FD +P  D+ SWN+++S          AL++   M+L   +
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
            +  + V  L    + G++     IH YV K G +   + V +AL +MY K   +E +  
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF-DLFVSNALINMYAKFGNLEDARK 372

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD---EGIGLDEVTLSTTLKALSV 427
            F+      +   NS++ +   +    D V   GF V     G   D +TL +   A  V
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQN---DDPVTAHGFFVKMQLNGFQPDLLTLVSL--ASIV 427

Query: 428 SASANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           + S +  + R +H   ++ G+   ++ +  +++D Y++ G ++ +H+VFE IP  +V+ +
Sbjct: 428 AQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIIPVKDVISW 487

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
            +++ GY++NG+  EA+++ ++M + + +IP++ T++ +L    H G +++G  +   + 
Sbjct: 488 NTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMKIHGRVI 547

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
               +  D    +C+ID+ G+ G L  A  L  Q P     + W++++    +HG+
Sbjct: 548 KT-NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIISCHGIHGH 601



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 52/183 (28%), Positives = 87/183 (47%), Gaps = 2/183 (1%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           +++P   T  ++ P    +  L   + +     + N  L+++ +   ID + K G L  A
Sbjct: 515 EIIPNQGTWVSILPAYAHVGALQQGMKIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 574

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
             LF ++P    VT+N +IS  G   H ++ L L+ EM+  G+K    TF S+LS CS++
Sbjct: 575 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLM 182
           GF  EG      +   G   +L     +VDL  R G    A D   ++P + + + W  +
Sbjct: 635 GFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYDFIKDMPLQPDASIWGAL 694

Query: 183 LRA 185
           L A
Sbjct: 695 LGA 697



 Score = 53.5 bits (127), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + LH   + +G   +I +S  L++ Y+  G + LS   F++IP  +V  + S+++ Y  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYAWNSMISAYVH 194

Query: 496 NGMGREALD-MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
           NG   EA+    ++++   + PD  TF  VL  C   G + +G+ + +      G   + 
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRKI-HCWAFKLGFQWNV 250

Query: 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
              + +I M  R G    A  L    P   D   W++++     +GN      V +  M 
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMP-FRDMGSWNAMISGLIQNGNAAQALDVLD-EMR 308

Query: 615 LEPV--DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           LE +  +F     +     ++G+   +M I    +   L  D+
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDL 351


>gi|449440387|ref|XP_004137966.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  327 bits (837), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 189/655 (28%), Positives = 350/655 (53%), Gaps = 7/655 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T T L   C+S+  L     +  +    N Q ++   N  +  + K G L  A+ +FD M
Sbjct: 100 TYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSM 159

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P +++V++  +ISG  ++     A+ LY +M+  G      TF S++  CS    +    
Sbjct: 160 PLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLAR 219

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  VL   FG +L   + L+ +Y +      A+++F  +  ++L +W  M+  F +L 
Sbjct: 220 QLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLG 279

Query: 191 RPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              E L  + +M ++ V +PN   F      CS  +  D G+Q+H   IK G +  ++F 
Sbjct: 280 YELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFG-LGSDLFA 338

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             +L D Y+ CG L  A+  F  I   D+++WN+I++ +A      ++   F +M+    
Sbjct: 339 GCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGL 398

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P+  + +  L   S    +  G Q+H Y+ K+GF+   + V ++L  MY KC+ +  ++
Sbjct: 399 VPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNL-DIPVCNSLLSMYSKCSNLNDAL 457

Query: 370 AVFESAPGRS-LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            VFE    ++ +   N+L+T+ L      + + +   M    I  D VTL+  L +    
Sbjct: 458 QVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQI 517

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           AS  +GS   +HC  +KSG   +I+VS +L++ Y++CG +E + ++F+ I +P+++ ++S
Sbjct: 518 ASYEVGS--QIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSS 575

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY++ G G+EA ++   M   G+ P+++TF+ +L  C+H GMV+EG  ++ +M+  Y
Sbjct: 576 LIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDY 635

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            I   ++H SCM+D+L RAG LD AE+ ++Q P   D ++W +LL +C+VHGN  +G+R 
Sbjct: 636 RISPTKEHCSCMVDLLARAGCLDVAEDFIKQMPFVPDVVVWKTLLAACKVHGNLEVGKRA 695

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           A  +++++P + A    + N ++  G ++   ++R +     + +  G S IE+ 
Sbjct: 696 AENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIK 750



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 222/483 (45%), Gaps = 10/483 (2%)

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEP-NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
           + C+ +   E L+ ++  +     P   +++ +++  CS    L+ G+++H H++   + 
Sbjct: 71  SLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNY- 129

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
             ++ + N ++  Y  CGSL EA+  FD +P+ +V+SW S++S Y+ Y    +A+ L+ +
Sbjct: 130 QPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQ 189

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M      P   +F   +   S   +    +Q+H +V K  F    +  Q+AL  MY K +
Sbjct: 190 MLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFG-ADLIAQNALISMYTKFS 248

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI-GLDEVTLSTTL 422
            +  ++ VF     + L    S++      G   +A+  F  M+ + +   +E    +  
Sbjct: 249 QMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAF 308

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A S     + G  R +H   IK G  S++   CSL D Y++CG +E +  VF  I  P+
Sbjct: 309 SACSKLLEPDCG--RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPD 366

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V + +I+ G++     +E+      M   GL+P+ VT L +L  C+   M+  G  V +
Sbjct: 367 LVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHS 426

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC--RVHG 600
            +  + G + D    + ++ M  +   L+ A ++ +      D + W++LL +C  +   
Sbjct: 427 YIVKM-GFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQA 485

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
            E++          ++P D    + V     +I  +EV  QI    +   L  DI  S  
Sbjct: 486 GEVLRLTKLMFASRIKP-DHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNA 544

Query: 661 EVN 663
            +N
Sbjct: 545 LIN 547


>gi|359489486|ref|XP_002269573.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Vitis vinifera]
          Length = 786

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 203/626 (32%), Positives = 329/626 (52%), Gaps = 33/626 (5%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +  S N  I  +  SG LN A+KLF E P R  +T++ LISG  ++    +AL L+ 
Sbjct: 68  PDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSCITWSSLISGYCRYGCDVEALELFW 127

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G + +  T+ SVL VCS      +G QIH   +   F  N ++ + LVD+Y +  
Sbjct: 128 EMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAHAIKTQFDSNAFVVTGLVDMYAKCK 187

Query: 160 PSVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
             + A  LF+  P+ RN   W  M+  + +     + +  +  M+ EG+E N  +F  ++
Sbjct: 188 CILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGHKAIECFRDMRGEGIECNQFTFPSIL 247

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C        G Q+H  +++ G+   N+FV +ALVD YS CG L  A++  + + VDD 
Sbjct: 248 TACGSISACGFGAQVHGCIVRSGF-GANVFVGSALVDMYSKCGDLSNARRMLETMEVDDP 306

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWNS++       L  +AL LF  M L   +    ++   LN  S   ++     +H  
Sbjct: 307 VSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKIDEFTYPSVLNCFSFVMDMRNAMSVHSL 366

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + K GF+   + V +AL DMY K    + +  VFE    + +    SL+T  +H+G+ ++
Sbjct: 367 IVKTGFEAYKL-VNNALVDMYAKRGYFDYAFDVFEKMTDKDVISWTSLVTGCVHNGSYEE 425

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M   GI  D++ ++  L A +       G  + +H   +KSG  S+++V  SL
Sbjct: 426 ALRLFCEMRIMGIHPDQIVIAAVLSACAELTVLEFG--KQVHANFLKSGLGSSLSVDNSL 483

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG IE +++VF+ +   +V+ +T+++ GY++NG GR+                 
Sbjct: 484 VSMYAKCGCIEDANKVFDSMEIQDVITWTALIVGYAQNGRGRD----------------- 526

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
                      H+G+V+ G+  F SM+ VYGI    +HY+CMID+LGR+G L +A+ELL 
Sbjct: 527 -----------HAGLVEHGRSYFQSMEEVYGIKPGPEHYACMIDLLGRSGKLMEAKELLN 575

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           Q     D  +W +LL +CRVHGN  +G R AN L ELEP +   Y  +SN YS  G++E 
Sbjct: 576 QMAVQPDATVWKALLAACRVHGNVELGERAANNLFELEPKNAVPYVLLSNLYSAAGKWEE 635

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
           + + R     R ++++ G S IE++S
Sbjct: 636 AAKTRRLMKLRGVSKEPGCSWIEMSS 661



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 106/384 (27%), Positives = 183/384 (47%), Gaps = 37/384 (9%)

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD------------------- 290
           +N ++   S CG + +A+K FD +P  D  SWN+++  YA+                   
Sbjct: 44  SNWVLSNLSKCGRVDDARKLFDVMPDRDECSWNTMIGAYANSGRLNEARKLFYETPIRSC 103

Query: 291 ------------YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
                       Y    +ALELF+ MQ   +RP+  ++   L   S    +  GKQIH +
Sbjct: 104 ITWSSLISGYCRYGCDVEALELFWEMQYEGERPNQFTWGSVLRVCSMYVLLEKGKQIHAH 163

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIK 397
             K  FD  +  V + L DMY KC  I  +  +FE AP  R+     +++T    +G+  
Sbjct: 164 AIKTQFDSNAF-VVTGLVDMYAKCKCILEAEYLFELAPDKRNHVLWTAMVTGYSQNGDGH 222

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A+E F  M  EGI  ++ T  + L A    ++   G+   +H C ++SGF +N+ V  +
Sbjct: 223 KAIECFRDMRGEGIECNQFTFPSILTACGSISACGFGA--QVHGCIVRSGFGANVFVGSA 280

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D YS+CG +  + ++ E +   + V + S++ G  R G+G EAL +  +M  R +  D
Sbjct: 281 LVDMYSKCGDLSNARRMLETMEVDDPVSWNSMIVGCVRQGLGEEALSLFRIMHLRHMKID 340

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           + T+  VL  C    M     +  +S+    G +A +   + ++DM  + G  D A ++ 
Sbjct: 341 EFTYPSVL-NCFSFVMDMRNAMSVHSLIVKTGFEAYKLVNNALVDMYAKRGYFDYAFDVF 399

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGN 601
           ++     D + W+SL+  C  +G+
Sbjct: 400 EKMT-DKDVISWTSLVTGCVHNGS 422


>gi|449523810|ref|XP_004168916.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At2g01510-like [Cucumis
           sativus]
          Length = 816

 Score =  326 bits (836), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 340/627 (54%), Gaps = 11/627 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S N  I   +K G L+ A++LFD M  R  V++ +LI G  +    K+A  LY 
Sbjct: 70  PAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYA 129

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   GI+    T  ++LS           +QIH  V+ LG+  NL + + LVD Y +  
Sbjct: 130 DMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH 189

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF  +  ++  T+N ++  +      +E + ++ ++   G++P+  +F  ++ 
Sbjct: 190 CLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALL- 248

Query: 220 GCSIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             S  + LD+   G+Q+H  V+K  +V  N+FV NAL+D+YS    + E  K F  +P  
Sbjct: 249 --SAAVGLDDTKFGQQVHGFVLKTNFV-WNVFVGNALLDYYSKHDQVDEVGKLFXEMPEL 305

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D IS+N +++ YA      ++ +LF ++Q  R       F   L+ A+ + N+  G+QIH
Sbjct: 306 DGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIH 365

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
                +G +  S  V++AL DMY KCN  + +  +F++   +S     +++++ +  G  
Sbjct: 366 CQAITVGANFES-RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKH 424

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++ + +F  M   G+  D+ T ++ L+A +  AS +LG  R LH   I+SGF SN+    
Sbjct: 425 EEGINVFSDMRRTGVPADQATFASILRACANLASISLG--RQLHSLLIRSGFMSNVYSGS 482

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG +  + + F ++P  N V + ++++ Y++NG     L+  + MIQ G  P
Sbjct: 483 ALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKP 542

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D V+FL VL+ C+H G V+E    FNSM  +Y +   R+HY+ M+D+L R G  D+AE+L
Sbjct: 543 DSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKL 602

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGE 635
           + + P     +MWSS+L SCR+H N  + ++ A+ L  +E + D A Y  +SN Y+  G+
Sbjct: 603 MTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQ 662

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++   ++++    R + +   +S +E+
Sbjct: 663 WDNVAKVKKAMRDRGVRKVPAYSWVEI 689



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 234/501 (46%), Gaps = 37/501 (7%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP------------------- 172
           I   ++  GF  N    +  V+ ++  G  V A  +FD++P                   
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 173 ------------ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
                       ER   +W +++  + + ++  E  R+Y  M+  G+EP+ ++   ++ G
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                  +   Q+H+HVIKLG+ + N+ V N+LVD Y     L  A + F  +   D ++
Sbjct: 150 FGELETKNVIVQIHTHVIKLGY-EYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           +NS+++ Y++  L  +A+ELF  +     +PS  +F   L+ A    +  FG+Q+HG+V 
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K  F   +V V +AL D Y K + ++    +F   P       N ++TS   +G  K++ 
Sbjct: 269 KTNFV-WNVFVGNALLDYYSKHDQVDEVGKLFXEMPELDGISYNVVITSYAWNGQFKESF 327

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  +        +   +T L     ++S NL   R +HC AI  G      V  +L+D
Sbjct: 328 DLFRKLQFTRFDRRQFPFATLLSI--ATSSLNLRMGRQIHCQAITVGANFESRVENALVD 385

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++C   + + ++F+ I   + V +T++++ Y + G   E +++   M + G+  D+ T
Sbjct: 386 MYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQAT 445

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F  +L  C +   +  G+ + +S+    G  ++    S ++D   + G +  A +   + 
Sbjct: 446 FASILRACANLASISLGRQL-HSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEM 504

Query: 581 PGGGDCMMWSSLLRSCRVHGN 601
           P   + + W++L+ +   +GN
Sbjct: 505 P-ERNSVSWNALISAYAQNGN 524



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           S +   +L S  L+    +K+GF  N   S   ++ +   G +  +HQVF+++P+ N + 
Sbjct: 17  SPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTIS 76

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
              +++G+ + G   +A ++ + M++R      V++  ++ G   S   KE   ++  M+
Sbjct: 77  LNMMISGHLKFGKLSKARELFDGMVER----TAVSWTILIGGYLQSNQSKEAFRLYADMR 132

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
              GI+ D   Y  ++ +L   G L+    ++Q
Sbjct: 133 RG-GIEPD---YVTLVTLLSGFGELETKNVIVQ 161


>gi|449518693|ref|XP_004166371.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Cucumis sativus]
          Length = 792

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 189/655 (28%), Positives = 350/655 (53%), Gaps = 7/655 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T T L   C+S+  L     +  +    N Q ++   N  +  + K G L  A+ +FD M
Sbjct: 100 TYTHLINACSSLRSLEHGRKIHRHMLTCNYQPDMILQNHILSMYGKCGSLKEARNMFDSM 159

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P +++V++  +ISG  ++     A+ LY +M+  G      TF S++  CS    +    
Sbjct: 160 PLKNVVSWTSMISGYSRYGEEDNAITLYVQMLRSGHIPDHFTFGSIVKSCSGLDDFKLAR 219

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  VL   FG +L   + L+ +Y +      A+++F  +  ++L +W  M+  F +L 
Sbjct: 220 QLHAHVLKSEFGADLIAQNALISMYTKFSQMADAINVFSRIIIKDLISWGSMIAGFSQLG 279

Query: 191 RPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              E L  + +M ++ V +PN   F      CS  +  D G+Q+H   IK G +  ++F 
Sbjct: 280 YELEALCHFREMLSQSVYQPNEFVFGSAFSACSKLLEPDCGRQIHGLCIKFG-LGSDLFA 338

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             +L D Y+ CG L  A+  F  I   D+++WN+I++ +A      ++   F +M+    
Sbjct: 339 GCSLCDMYAKCGFLESARTVFYHIEKPDLVAWNAIIAGFASVSNAKESSSFFSQMRHTGL 398

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P+  + +  L   S    +  G Q+H Y+ K+GF+   + V ++L  MY KC+ +  ++
Sbjct: 399 VPNDVTVLSLLCACSEPVMLNHGIQVHSYIVKMGFNL-DIPVCNSLLSMYSKCSNLNDAL 457

Query: 370 AVFESAPGRS-LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            VFE    ++ +   N+L+T+ L      + + +   M    I  D VTL+  L +    
Sbjct: 458 QVFEDIGNKADIVSWNTLLTACLQQNQAGEVLRLTKLMFASRIKPDHVTLTNVLVSSGQI 517

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           AS  +GS   +HC  +KSG   +I+VS +L++ Y++CG +E + ++F+ I +P+++ ++S
Sbjct: 518 ASYEVGS--QIHCFIMKSGLNLDISVSNALINMYTKCGSLECARKMFDSIGNPDIISWSS 575

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY++ G G+EA ++   M   G+ P+++TF+ +L  C+H GMV+EG  ++ +M+  Y
Sbjct: 576 LIVGYAQAGCGKEAFELFRTMRGLGVKPNEITFVGILTACSHIGMVEEGLKLYRTMQEDY 635

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            I   ++H SCM+D+L RAG LD AE+ ++Q P   D ++W +LL +C+VHGN  +G+R 
Sbjct: 636 RISPTKEHCSCMVDLLARAGCLDVAEDFIRQMPFVPDVVVWKTLLAACKVHGNLEVGKRA 695

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           A  +++++P + A    + N ++  G ++   ++R +     + +  G S IE+ 
Sbjct: 696 AENVLKIDPSNSAAVVMLCNIHASSGHWKDFARLRSSMRRMDVGKVPGQSWIEIK 750



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 115/483 (23%), Positives = 222/483 (45%), Gaps = 10/483 (2%)

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEP-NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
           + C+ +   E L+ ++  +     P   +++ +++  CS    L+ G+++H H++   + 
Sbjct: 71  SLCKKNLHREALKAFDIFQKCSSSPLKSVTYTHLINACSSLRSLEHGRKIHRHMLTCNY- 129

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
             ++ + N ++  Y  CGSL EA+  FD +P+ +V+SW S++S Y+ Y    +A+ L+ +
Sbjct: 130 QPDMILQNHILSMYGKCGSLKEARNMFDSMPLKNVVSWTSMISGYSRYGEEDNAITLYVQ 189

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M      P   +F   +   S   +    +Q+H +V K  F    +  Q+AL  MY K +
Sbjct: 190 MLRSGHIPDHFTFGSIVKSCSGLDDFKLARQLHAHVLKSEFG-ADLIAQNALISMYTKFS 248

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI-GLDEVTLSTTL 422
            +  ++ VF     + L    S++      G   +A+  F  M+ + +   +E    +  
Sbjct: 249 QMADAINVFSRIIIKDLISWGSMIAGFSQLGYELEALCHFREMLSQSVYQPNEFVFGSAF 308

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A S     + G  R +H   IK G  S++   CSL D Y++CG +E +  VF  I  P+
Sbjct: 309 SACSKLLEPDCG--RQIHGLCIKFGLGSDLFAGCSLCDMYAKCGFLESARTVFYHIEKPD 366

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V + +I+ G++     +E+      M   GL+P+ VT L +L  C+   M+  G  V +
Sbjct: 367 LVAWNAIIAGFASVSNAKESSSFFSQMRHTGLVPNDVTVLSLLCACSEPVMLNHGIQVHS 426

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC--RVHG 600
            +  + G + D    + ++ M  +   L+ A ++ +      D + W++LL +C  +   
Sbjct: 427 YIVKM-GFNLDIPVCNSLLSMYSKCSNLNDALQVFEDIGNKADIVSWNTLLTACLQQNQA 485

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
            E++          ++P D    + V     +I  +EV  QI    +   L  DI  S  
Sbjct: 486 GEVLRLTKLMFASRIKP-DHVTLTNVLVSSGQIASYEVGSQIHCFIMKSGLNLDISVSNA 544

Query: 661 EVN 663
            +N
Sbjct: 545 LIN 547


>gi|326494876|dbj|BAJ94557.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 783

 Score =  326 bits (835), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 182/616 (29%), Positives = 331/616 (53%), Gaps = 4/616 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++     ++ + K+G +++A  +FD +PAR+ VT+  +I+G  +      AL L+  M 
Sbjct: 171 NVFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMG 230

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++      +S  S CS  GF   G QIH          +  + + L+DLY +    +
Sbjct: 231 LDGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAESDASVVNALIDLYCKCSRLL 290

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD +  RNL +W  M+  + + S   E + M+ ++   G +P+  +   ++  C 
Sbjct: 291 LARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCG 350

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               + +G+Q+H+HVIK   ++ + +V NAL+D Y+ C  L EA+  F+ +  DD IS+N
Sbjct: 351 SLAAIWQGRQVHAHVIKAD-LESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISYN 409

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  YA    +  A+E+F +M+ C  +PS+ +FV  L  +S   ++   KQIHG + K 
Sbjct: 410 AMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKS 469

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     ++  SAL D+Y K ++++ +  VF     R +   N+++  L  +   ++AV++
Sbjct: 470 GTSL-DLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKL 528

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  +   G+  +E T    +   S  AS   G  +  H   IK+G +S+  +S +L+D Y
Sbjct: 529 FARLRVSGLTPNEFTFVALVTVASTLASIFHG--QQFHAQIIKAGADSDPHISNALIDMY 586

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG IE    +FE     +V+C+ S+++ Y+++G   EAL +  +M   G+ P+ VTF+
Sbjct: 587 AKCGFIEEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFV 646

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C H+G+V EG   FNSMK+ Y ++   +HY+ ++++ GR+G L  A+E +++ P 
Sbjct: 647 SVLSACAHAGLVDEGLHHFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPI 706

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                +W SLL +C + GN  IGR    + +  +P D      +SN Y+  G +  + ++
Sbjct: 707 EPVATIWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASKGLWADAQKL 766

Query: 643 RETALARKLTRDIGHS 658
           R+      + ++ G+S
Sbjct: 767 RQGMDCAGVVKEPGYS 782



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 146/566 (25%), Positives = 285/566 (50%), Gaps = 14/566 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ +N  +  + K G L  A++LFD MP+R++V++   IS   +      AL L+    
Sbjct: 64  DLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGREDDALLLFAAFP 123

Query: 103 SHGIK----ESASTF--SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           S G      E  + F  +S L  C+ +     G Q+H     LG   N+++G+ LV+LY 
Sbjct: 124 SAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLGLDANVFVGTALVNLYA 183

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A+ +FD LP RN  TW  ++  + +  +    L ++ +M  +GV P+      
Sbjct: 184 KAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGLDGVRPDRFVLAS 243

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
               CS    ++ G+Q+H +  +    + +  V NAL+D Y  C  L+ A++ FD +   
Sbjct: 244 AASACSGLGFVEGGRQIHGYAYRTA-AESDASVVNALIDLYCKCSRLLLARRLFDSMENR 302

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +++SW ++++ Y    L  +A+ +F+++     +P + +    LN       ++ G+Q+H
Sbjct: 303 NLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILNSCGSLAAIWQGRQVH 362

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +V K   +    +V++AL DMY KC  +  + AVFE+         N+++      G++
Sbjct: 363 AHVIKADLESDE-YVKNALIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYARLGDL 421

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVS 455
             AVE+FG M    +   + +L T +  L VS+S ++L   + +H   +KSG   ++   
Sbjct: 422 TGAVEIFGKMRYCSL---KPSLLTFVSLLGVSSSRSDLELSKQIHGLIVKSGTSLDLYAG 478

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +L+D YS+   ++ +  VF  + + ++V + +++ G ++N  G EA+ +   +   GL 
Sbjct: 479 SALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARLRVSGLT 538

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P++ TF+ ++   +    +  GQ  F++     G D+D    + +IDM  + G +++   
Sbjct: 539 PNEFTFVALVTVASTLASIFHGQ-QFHAQIIKAGADSDPHISNALIDMYAKCGFIEEGRL 597

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGN 601
           L + T  G D + W+S++ +   HG+
Sbjct: 598 LFESTL-GKDVICWNSMISTYAQHGH 622



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 123/470 (26%), Positives = 221/470 (47%), Gaps = 18/470 (3%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H R +  G   +L++ + L+  Y ++G    A  LFD +P RNL +W   +  + +  R 
Sbjct: 53  HARAVVSGLLPDLFLANLLLRGYSKLGRLGDARRLFDSMPSRNLVSWGSAISMYAQHGRE 112

Query: 193 DEVLRMYNKMKAEGVE------PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
           D+ L ++    + G        PN       +R C+       G+Q+H    KLG +D N
Sbjct: 113 DDALLLFAAFPSAGAASPDGEPPNEFLLASALRACAQSRAARFGEQVHGVAAKLG-LDAN 171

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           +FV  ALV+ Y+  G +  A   FD +P  + ++W ++++ Y+       ALELF RM L
Sbjct: 172 VFVGTALVNLYAKAGRIDAAMSVFDALPARNPVTWTAVITGYSQAGQAGVALELFGRMGL 231

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              RP         +  S  G V  G+QIHGY  +   +     V +AL D+Y KC+ + 
Sbjct: 232 DGVRPDRFVLASAASACSGLGFVEGGRQIHGYAYRTAAE-SDASVVNALIDLYCKCSRLL 290

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  +F+S   R+L    +++   + +    +A+ MF  +   G   D    ++ L   S
Sbjct: 291 LARRLFDSMENRNLVSWTTMIAGYMQNSLDTEAMSMFWQLSQAGWQPDVFACTSILN--S 348

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
             + A +   R +H   IK+  ES+  V  +L+D Y++C H+  +  VFE +   + + +
Sbjct: 349 CGSLAAIWQGRQVHAHVIKADLESDEYVKNALIDMYAKCEHLTEARAVFEALAEDDAISY 408

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++ GY+R G    A+++   M    L P  +TF+ +L G + S    E     + +  
Sbjct: 409 NAMIEGYARLGDLTGAVEIFGKMRYCSLKPSLLTFVSLL-GVSSSRSDLELSKQIHGLIV 467

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAE---ELLQQTPGGGDCMMWSSLL 593
             G   D    S +ID+  +  ++D A+    L+Q      D ++W++++
Sbjct: 468 KSGTSLDLYAGSALIDVYSKFSLVDDAKLVFSLMQNR----DMVIWNAMI 513



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 64/247 (25%), Positives = 128/247 (51%), Gaps = 3/247 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++Y+ +  ID + K   ++ AK +F  M  RDMV +N +I G  +    ++A+ L+  +
Sbjct: 473 LDLYAGSALIDVYSKFSLVDDAKLVFSLMQNRDMVIWNAMIFGLAQNERGEEAVKLFARL 532

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G+  +  TF ++++V S       G Q H +++  G   + +I + L+D+Y + G  
Sbjct: 533 RVSGLTPNEFTFVALVTVASTLASIFHGQQFHAQIIKAGADSDPHISNALIDMYAKCGFI 592

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
                LF+    +++  WN M+  + +    +E L ++  M+  GVEPN ++F  ++  C
Sbjct: 593 EEGRLLFESTLGKDVICWNSMISTYAQHGHAEEALHVFGMMEGAGVEPNYVTFVSVLSAC 652

Query: 222 SIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           +   L+DEG   H + +K  + V+       ++V+ +   G L  AK+  + +P++ V +
Sbjct: 653 AHAGLVDEGLH-HFNSMKTKYAVEPGTEHYASVVNLFGRSGKLHAAKEFIERMPIEPVAT 711

Query: 281 -WNSIVS 286
            W S++S
Sbjct: 712 IWRSLLS 718


>gi|302805550|ref|XP_002984526.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
 gi|300147914|gb|EFJ14576.1| hypothetical protein SELMODRAFT_181046 [Selaginella moellendorffii]
          Length = 792

 Score =  325 bits (834), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 188/648 (29%), Positives = 356/648 (54%), Gaps = 14/648 (2%)

Query: 19  TCTSIVPLSSSLLLDSYCQPNPQL---NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDM 75
           +C+++  L  +  + +     PQ+   N+   N  ++ + K G +  A+K+FD +  RD 
Sbjct: 153 SCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDA 212

Query: 76  VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
           V++  +IS         +AL LY +M + GI+  + TF+S L  C+      +G  IH R
Sbjct: 213 VSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALLACTK---LVDGKAIHAR 269

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
           ++S     + ++GS L+++Y R G    A   F+++  +++  W  ++ A+ +     E 
Sbjct: 270 IVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREA 328

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L +Y +M  EGV  +G+++   +  C+    L EGK +HS V + G+   ++ V  AL+ 
Sbjct: 329 LDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRVFECGFQ--SLVVHTALLT 386

Query: 256 FYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
            Y+ CG L  A+  F+ +    +V  W +++S YA      +ALEL+ +M     RP+  
Sbjct: 387 MYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEY 446

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           +F   L   S +G++  G +IHG+V        +V VQ+AL  MY KC  +E + + FE+
Sbjct: 447 TFSNVLAACSSSGDLEAGMKIHGHVENSELA-SNVAVQNALVTMYAKCGSLELAKSAFEA 505

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           +  + L   N+++ +    G  ++A++++  M  +G+  DEVT++++L A ++S S  LG
Sbjct: 506 SGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAISGSLQLG 565

Query: 435 SCRLLHCCAIKS-GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
             R +H   +K+  F S++ V  +L++ Y RCG +E +  +FE +   +V+ +T++ + Y
Sbjct: 566 --REIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTAMTSAY 623

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
           ++ G   + LD+   M+  G+ P+++TF  +L GC+H+G++  G   F  M+S + +   
Sbjct: 624 AQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEMQSEHEVVPI 683

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
           R+H+ CM+D+LGR+G L  AE L++  P   D + W ++L SC+ H +    +R A  + 
Sbjct: 684 REHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADTAKRAARRVK 743

Query: 614 ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           EL+P + ++YS +S+ ++  G  + +++++ +     L +  G SLIE
Sbjct: 744 ELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 791



 Score =  239 bits (611), Expect = 3e-60,   Method: Compositional matrix adjust.
 Identities = 156/588 (26%), Positives = 299/588 (50%), Gaps = 16/588 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           N +  N  I  +   G ++ A+  F    + + +  YN ++S  GK     +AL LY  M
Sbjct: 76  NQFLGNLLIQMYGNCGEIHLARAAFQNFASIKAVACYNQMLSAYGKNGLWNRALELYHRM 135

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMG 159
              G +    T+  VL  CS  G   E  +IH  ++     +  NL + + LV++Y + G
Sbjct: 136 CEEGPEPDKITYFIVLGSCSAVGSLREAREIHASIIEAPQIIRDNLSLQNALVNMYGKCG 195

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD +  R+  +W  M+ ++      DE L +Y +M A+G++P+ ++F   + 
Sbjct: 196 SVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITFTSALL 255

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L +GK +H+ ++       + FV +AL++ Y+ CG +  A+++F+ I    V+
Sbjct: 256 ACTK---LVDGKAIHARIVSSNM--ESDFVGSALINMYARCGDVSSARQAFEKIQNKHVV 310

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
            W S+++ Y       +AL+L+ RM          ++V  L   +  G +  GK IH  V
Sbjct: 311 CWTSLMTAYVQTCHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAIHSRV 370

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA-PGRSLECCNSLMTSLLHSGNIKD 398
            + GF   S+ V +AL  MY KC  ++++ AVF      R++ C  +++++   +G+ ++
Sbjct: 371 FECGFQ--SLVVHTALLTMYAKCGELDAARAVFNRVRQKRNVYCWTAMISAYAQAGHTQE 428

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+E++  MV EG   +E T S  L A   S+S +L +   +H     S   SN+AV  +L
Sbjct: 429 ALELYDQMVAEGTRPNEYTFSNVLAA--CSSSGDLEAGMKIHGHVENSELASNVAVQNAL 486

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG +EL+   FE     ++V + +++  Y+++G+GREALD+ + M  +G++PD+
Sbjct: 487 VTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDE 546

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VT    L+ C  SG ++ G+ + + +       +     + +++M GR G L+ A  + +
Sbjct: 547 VTIASSLSACAISGSLQLGREIHSRVLKNQSFRSSLMVQTALVNMYGRCGRLETARSMFE 606

Query: 579 QTPGGGDCMMWSSLLRSC--RVHGNEIIGRRVANILMELEPVDFAVYS 624
              G  D + W+++  +   + H ++++   +  +L  + P +    S
Sbjct: 607 DM-GQRDVLSWTAMTSAYAQQGHADQVLDLYLEMVLHGIRPNEITFTS 653



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 138/502 (27%), Positives = 263/502 (52%), Gaps = 16/502 (3%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +  +L  C   G   EG  +H  +L  G G N ++G+ L+ +Y   G    A   F    
Sbjct: 45  YDELLQQCGRLGSLAEGKLVHRHLLRTGHGRNQFLGNLLIQMYGNCGEIHLARAAFQNFA 104

Query: 173 E-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             + +A +N ML A+ +    +  L +Y++M  EG EP+ +++  ++  CS    L E +
Sbjct: 105 SIKAVACYNQMLSAYGKNGLWNRALELYHRMCEEGPEPDKITYFIVLGSCSAVGSLREAR 164

Query: 232 QLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           ++H+ +I+    +  N+ + NALV+ Y  CGS+ EA+K FD I   D +SW S++S YA+
Sbjct: 165 EIHASIIEAPQIIRDNLSLQNALVNMYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYAN 224

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +AL+L+ +M     +P   +F   L   ++  +   GK IH  +     +  S  
Sbjct: 225 NGFCDEALDLYQQMDADGIQPDSITFTSALLACTKLVD---GKAIHARIVSSNME--SDF 279

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V SAL +MY +C  + S+   FE    + + C  SLMT+ + + + ++A++++G M  EG
Sbjct: 280 VGSALINMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTCHYREALDLYGRMDHEG 339

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D VT  T L A +   +   G  + +H    + GF+S + V  +L+  Y++CG ++ 
Sbjct: 340 VHADGVTYVTALGACASLGALKEG--KAIHSRVFECGFQS-LVVHTALLTMYAKCGELDA 396

Query: 471 SHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           +  VF ++    NV C+T++++ Y++ G  +EAL++ + M+  G  P++ TF  VLA C+
Sbjct: 397 ARAVFNRVRQKRNVYCWTAMISAYAQAGHTQEALELYDQMVAEGTRPNEYTFSNVLAACS 456

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            SG ++ G  +   +++   + ++    + ++ M  + G L+ A+   + + G  D + W
Sbjct: 457 SSGDLEAGMKIHGHVENSE-LASNVAVQNALVTMYAKCGSLELAKSAFEAS-GRKDLVSW 514

Query: 590 SSLLRSCRVHGNEIIGRRVANI 611
           ++++ +   HG   +GR   ++
Sbjct: 515 NAMIGAYAQHG---LGREALDL 533


>gi|449460574|ref|XP_004148020.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Cucumis sativus]
          Length = 816

 Score =  325 bits (833), Expect = 4e-86,   Method: Compositional matrix adjust.
 Identities = 193/627 (30%), Positives = 340/627 (54%), Gaps = 11/627 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S N  I   +K G L+ A++LFD M  R  V++ +LI G  +    K+A  LY 
Sbjct: 70  PAKNTISLNMMISGHLKFGKLSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYA 129

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   GI+    T  ++LS           +QIH  V+ LG+  NL + + LVD Y +  
Sbjct: 130 DMRRGGIEPDYVTLVTLLSGFGELETKNVIVQIHTHVIKLGYEYNLMVCNSLVDAYCKTH 189

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF  +  ++  T+N ++  +      +E + ++ ++   G++P+  +F  ++ 
Sbjct: 190 CLYLASQLFKHMLNKDTVTFNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALL- 248

Query: 220 GCSIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             S  + LD+   G+Q+H  V+K  +V  N+FV NAL+D+YS    + E  K F  +P  
Sbjct: 249 --SAAVGLDDTKFGQQVHGFVLKTNFV-WNVFVGNALLDYYSKHDQVDEVGKLFYEMPEL 305

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D IS+N +++ YA      ++ +LF ++Q  R       F   L+ A+ + N+  G+QIH
Sbjct: 306 DGISYNVVITSYAWNGQFKESFDLFRKLQFTRFDRRQFPFATLLSIATSSLNLRMGRQIH 365

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
                +G +  S  V++AL DMY KCN  + +  +F++   +S     +++++ +  G  
Sbjct: 366 CQAITVGANFES-RVENALVDMYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKH 424

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++ + +F  M   G+  D+ T ++ L+A +  AS +LG  R LH   I+SGF SN+    
Sbjct: 425 EEGINVFSDMRRTGVPADQATFASILRACANLASISLG--RQLHSLLIRSGFMSNVYSGS 482

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG +  + + F ++P  N V + ++++ Y++NG     L+  + MIQ G  P
Sbjct: 483 ALLDTYAKCGCMTDAIKSFGEMPERNSVSWNALISAYAQNGNVDGTLNSFQQMIQSGYKP 542

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D V+FL VL+ C+H G V+E    FNSM  +Y +   R+HY+ M+D+L R G  D+AE+L
Sbjct: 543 DSVSFLSVLSACSHCGFVEEALWHFNSMTQIYEVTPKREHYTSMVDVLCRNGRFDEAEKL 602

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGE 635
           + + P     +MWSS+L SCR+H N  + ++ A+ L  +E + D A Y  +SN Y+  G+
Sbjct: 603 MTEMPFEPSEIMWSSVLNSCRIHKNHELAKKAADRLFNMEDLRDAAPYINMSNIYAVAGQ 662

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++   ++++    R + +   +S +E+
Sbjct: 663 WDNVAKVKKAMRDRGVRKVPAYSWVEI 689



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/501 (23%), Positives = 234/501 (46%), Gaps = 37/501 (7%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP------------------- 172
           I   ++  GF  N    +  V+ ++  G  V A  +FD++P                   
Sbjct: 30  IDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTISLNMMISGHLKFGK 89

Query: 173 ------------ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
                       ER   +W +++  + + ++  E  R+Y  M+  G+EP+ ++   ++ G
Sbjct: 90  LSKARELFDGMVERTAVSWTILIGGYLQSNQSKEAFRLYADMRRGGIEPDYVTLVTLLSG 149

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                  +   Q+H+HVIKLG+ + N+ V N+LVD Y     L  A + F  +   D ++
Sbjct: 150 FGELETKNVIVQIHTHVIKLGY-EYNLMVCNSLVDAYCKTHCLYLASQLFKHMLNKDTVT 208

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           +NS+++ Y++  L  +A+ELF  +     +PS  +F   L+ A    +  FG+Q+HG+V 
Sbjct: 209 FNSLMTGYSNEGLNEEAIELFLELHNSGIKPSDFTFAALLSAAVGLDDTKFGQQVHGFVL 268

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K  F   +V V +AL D Y K + ++    +F   P       N ++TS   +G  K++ 
Sbjct: 269 KTNFV-WNVFVGNALLDYYSKHDQVDEVGKLFYEMPELDGISYNVVITSYAWNGQFKESF 327

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  +        +   +T L     ++S NL   R +HC AI  G      V  +L+D
Sbjct: 328 DLFRKLQFTRFDRRQFPFATLLSI--ATSSLNLRMGRQIHCQAITVGANFESRVENALVD 385

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++C   + + ++F+ I   + V +T++++ Y + G   E +++   M + G+  D+ T
Sbjct: 386 MYAKCNGDKEAQKIFDNIACKSTVPWTAMISAYVQKGKHEEGINVFSDMRRTGVPADQAT 445

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F  +L  C +   +  G+ + +S+    G  ++    S ++D   + G +  A +   + 
Sbjct: 446 FASILRACANLASISLGRQL-HSLLIRSGFMSNVYSGSALLDTYAKCGCMTDAIKSFGEM 504

Query: 581 PGGGDCMMWSSLLRSCRVHGN 601
           P   + + W++L+ +   +GN
Sbjct: 505 P-ERNSVSWNALISAYAQNGN 524



 Score = 49.3 bits (116), Expect = 0.007,   Method: Compositional matrix adjust.
 Identities = 35/153 (22%), Positives = 75/153 (49%), Gaps = 8/153 (5%)

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           S +   +L S  L+    +K+GF  N   S   ++ +   G +  +HQVF+++P+ N + 
Sbjct: 17  SPAPKPSLNSNHLIDAHIVKTGFNPNTCRSNFQVNNFLERGDLVHAHQVFDQMPAKNTIS 76

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
              +++G+ + G   +A ++ + M++R      V++  ++ G   S   KE   ++  M+
Sbjct: 77  LNMMISGHLKFGKLSKARELFDGMVER----TAVSWTILIGGYLQSNQSKEAFRLYADMR 132

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
              GI+ D   Y  ++ +L   G L+    ++Q
Sbjct: 133 RG-GIEPD---YVTLVTLLSGFGELETKNVIVQ 161


>gi|359484317|ref|XP_003633097.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1005

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 191/621 (30%), Positives = 336/621 (54%), Gaps = 4/621 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  +D + K G +  A+++F  MP ++ V++N L++G  +    ++ L L+  M 
Sbjct: 263 DLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNGFAQMGDAEKVLNLFCRMT 322

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              I  S  T S+VL  C+N+G    G  +H   + +G  L+ +I   LVD+Y + G + 
Sbjct: 323 GSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIGCELDEFISCCLVDMYSKCGLAG 382

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            AL +F  + + ++ +W+ ++    +  +  E   ++ +M+  GV PN  +   +V   +
Sbjct: 383 DALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMRHSGVIPNQFTLASLVSAAT 442

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G+ +H+ V K G+   N  V NALV  Y   GS+ +  + F+     D+ISWN
Sbjct: 443 DLGDLYYGESIHACVCKYGFEYDNT-VCNALVTMYMKIGSVQDGCRVFEATTNRDLISWN 501

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S + D +     L +F +M      P++ +F+  L   S   +V  GKQ+H  + K 
Sbjct: 502 ALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSCSSLSDVDLGKQVHAQIVKN 561

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D G+  V +AL DMY K   +E +  +F     R L     ++      G  + AV+ 
Sbjct: 562 SLD-GNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFAWTVIVAGYAQDGQGEKAVKC 620

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EG+  +E TL+++L   S  A+  L S R LH  AIK+G   ++ V+ +L+D Y
Sbjct: 621 FIQMQREGVKPNEFTLASSLSGCSRIAT--LDSGRQLHSMAIKAGQSGDMFVASALVDMY 678

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG +E +  VF+ + S + V + +I+ GYS++G G +AL   E M+  G +PD+VTF+
Sbjct: 679 AKCGCVEDAEVVFDGLVSRDTVSWNTIICGYSQHGQGGKALKAFEAMLDEGTVPDEVTFI 738

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C+H G+++EG+  FNS+  +YGI    +HY+CM+D+LGRAG   + E  +++   
Sbjct: 739 GVLSACSHMGLIEEGKKHFNSLSKIYGITPTIEHYACMVDILGRAGKFHEVESFIEEMKL 798

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             + ++W ++L +C++HGN   G R A  L ELEP   + Y  +SN ++  G ++    +
Sbjct: 799 TSNVLIWETVLGACKMHGNIEFGERAAMKLFELEPEIDSNYILLSNMFAAKGMWDDVTNV 858

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R     R + ++ G S +EVN
Sbjct: 859 RALMSTRGVKKEPGCSWVEVN 879



 Score =  239 bits (610), Expect = 4e-60,   Method: Compositional matrix adjust.
 Identities = 158/596 (26%), Positives = 302/596 (50%), Gaps = 11/596 (1%)

Query: 9   RVRTITTLAPTCTSIVPLSSSLLLDSYCQP---NPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           R+R  + +  TC S   L+    +         NP  +++  N  ++ + K G  N A K
Sbjct: 127 RLRQYSGMLRTCASKGDLNEGKAIHGQVIKSGINPDSHLW--NSLVNVYAKCGSANYACK 184

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           +F E+P RD+V++  LI+G     +   A+ L+ EM   G++ +  T+++ L  CS    
Sbjct: 185 VFGEIPERDVVSWTALITGFVAEGYGSGAVNLFCEMRREGVEANEFTYATALKACSMCLD 244

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
              G Q+H   + +G   +L++GS LVDLY + G  V A  +F  +P++N  +WN +L  
Sbjct: 245 LEFGKQVHAEAIKVGDFSDLFVGSALVDLYAKCGEMVLAERVFLCMPKQNAVSWNALLNG 304

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           F ++   ++VL ++ +M    +  +  +   +++GC+    L  G+ +HS  I++G  ++
Sbjct: 305 FAQMGDAEKVLNLFCRMTGSEINFSKFTLSTVLKGCANSGNLRAGQIVHSLAIRIG-CEL 363

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           + F++  LVD YS CG   +A K F  I   DV+SW++I++         +A E+F RM+
Sbjct: 364 DEFISCCLVDMYSKCGLAGDALKVFVRIEDPDVVSWSAIITCLDQKGQSREAAEVFKRMR 423

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                P+  +    ++ A+  G++Y+G+ IH  V K GF++ +  V +AL  MY K   +
Sbjct: 424 HSGVIPNQFTLASLVSAATDLGDLYYGESIHACVCKYGFEYDNT-VCNALVTMYMKIGSV 482

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           +    VFE+   R L   N+L++    +      + +F  M+ EG   +  T  + L++ 
Sbjct: 483 QDGCRVFEATTNRDLISWNALLSGFHDNETCDTGLRIFNQMLAEGFNPNMYTFISILRSC 542

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           S  +  +LG  + +H   +K+  + N  V  +L+D Y++   +E +  +F ++   ++  
Sbjct: 543 SSLSDVDLG--KQVHAQIVKNSLDGNDFVGTALVDMYAKNRFLEDAETIFNRLIKRDLFA 600

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +T I+ GY+++G G +A+     M + G+ P++ T    L+GC+    +  G+ + +SM 
Sbjct: 601 WTVIVAGYAQDGQGEKAVKCFIQMQREGVKPNEFTLASSLSGCSRIATLDSGRQL-HSMA 659

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
              G   D    S ++DM  + G ++ AE +        D + W++++     HG 
Sbjct: 660 IKAGQSGDMFVASALVDMYAKCGCVEDAEVVFDGLV-SRDTVSWNTIICGYSQHGQ 714


>gi|224095278|ref|XP_002310370.1| predicted protein [Populus trichocarpa]
 gi|222853273|gb|EEE90820.1| predicted protein [Populus trichocarpa]
          Length = 711

 Score =  325 bits (833), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 208/636 (32%), Positives = 335/636 (52%), Gaps = 22/636 (3%)

Query: 43  NIYSSNRTIDDFVK--SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +IY +N  +  + K  SG LN A KLFDEMP +D VT+N +I+G  +  +   A      
Sbjct: 33  HIYVANNILFRYSKCFSGDLNLACKLFDEMPHKDTVTWNTMITGYVESGNLGAAWEFLKS 92

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G +    TF S+L   ++A  +  G Q+H  ++ +G+  ++Y GS L+D+Y +   
Sbjct: 93  MKRRGFQADGYTFGSILKGVAHACRHDLGQQVHSLIVKIGYEQSVYAGSALLDMYAKCER 152

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A D+F  +P RN  +WN ++  F ++   D    + + M+ EGV     +F  ++  
Sbjct: 153 VEDAYDVFQGMPVRNFVSWNALIDGFVQVGDRDTAFWLLDCMQKEGVRVEDGTFAPLL-- 210

Query: 221 CSIGMLLDEGK------QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FI 273
                LLD  K      QLH  +IK G    N  + NA +  YS CG L +AK+ FD  +
Sbjct: 211 ----TLLDGDKFYKLTMQLHCKIIKHGLEFYNA-LCNATLTAYSECGLLEDAKRVFDGAV 265

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              D+++WNS++  Y  +D   DA  LF  MQ     P I ++   ++      +  +GK
Sbjct: 266 GTRDLVTWNSMLVAYLVHDKDEDAFNLFLEMQGFGFEPDIYTYTCVISACFAAAHKNYGK 325

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCN--VIESSVAVFESAPGRSLECCNSLMTSLL 391
             H  V K G +  SV + +AL  MY K N   +E+++ +F S   +     NS++T   
Sbjct: 326 SFHALVIKRGLEE-SVTICNALITMYLKLNNKSMEAALNLFHSMKSKDRVSWNSILTGFS 384

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
             G  +DA+++FG M      +D+   S  L++ S  A   LG  + +H   +K+GF+SN
Sbjct: 385 QMGFSEDALKLFGHMRSSLEEIDDYAYSAVLRSCSDLAILQLG--QQIHLLTVKTGFDSN 442

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             V+ SL+  YS+CG IE + + FE     + + + SIM  Y+++G G  ALD+  +M +
Sbjct: 443 DFVASSLIFMYSKCGIIEDAWKCFEDTTKESSITWNSIMFAYAQHGQGDVALDLFSIMRE 502

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
           R +  D VTF+ VL  C+H G+V++G+ V  SM+S YGI    +HY+C +D+ GRAG L+
Sbjct: 503 REVKLDHVTFVAVLTACSHVGLVEQGRCVLKSMESDYGIPPRMEHYACAVDLFGRAGYLE 562

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +A+ L+   P   + M+  +LL +CR  GN  +  +VA+ L+E+EP +   Y  +SN Y 
Sbjct: 563 EAKALIDSMPFQPNAMVLKTLLGACRACGNIELAAQVASQLLEVEPEEHCTYVILSNMYG 622

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
            +  ++    +      RK+ +  G S IEV N  H
Sbjct: 623 HLKRWDDKASVTRLMRERKVKKVPGWSWIEVKNEVH 658



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 46/162 (28%), Positives = 84/162 (51%), Gaps = 3/162 (1%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC--GHIELSHQVFEKIP 479
           L ++  S+   L +  L HC A KSG  S+I V+ +++  YS+C  G + L+ ++F+++P
Sbjct: 4   LNSVVESSRHALYNVFLTHCQAFKSGIISHIYVANNILFRYSKCFSGDLNLACKLFDEMP 63

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             + V + +++ GY  +G    A + L+ M +RG   D  TF  +L G  H+     GQ 
Sbjct: 64  HKDTVTWNTMITGYVESGNLGAAWEFLKSMKRRGFQADGYTFGSILKGVAHACRHDLGQQ 123

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           V +S+    G +      S ++DM  +   ++ A ++ Q  P
Sbjct: 124 V-HSLIVKIGYEQSVYAGSALLDMYAKCERVEDAYDVFQGMP 164


>gi|356555301|ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score =  325 bits (832), Expect = 6e-86,   Method: Compositional matrix adjust.
 Identities = 186/619 (30%), Positives = 340/619 (54%), Gaps = 4/619 (0%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           + +N  +  + K G L+ +++LF  +  R++V++N L S   +     +A+ L+ EMV  
Sbjct: 118 FVANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRS 177

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           GI  +  + S +L+ C+       G +IH  +L +G  L+ +  + LVD+Y + G    A
Sbjct: 178 GIMPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSANALVDMYSKAGEIEGA 237

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           + +F ++   ++ +WN ++         D  L + ++MK  G  PN  +    ++ C+  
Sbjct: 238 VAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAM 297

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              + G+QLHS +IK+     ++F A  LVD YS C  + +A++++D +P  D+I+WN++
Sbjct: 298 GFKELGRQLHSSLIKMD-AHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNAL 356

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S Y+      DA+ LF +M       +  +    L   +    +   KQIH    K G 
Sbjct: 357 ISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKSGI 416

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
            +   +V ++L D YGKCN I+ +  +FE      L    S++T+    G+ ++A++++ 
Sbjct: 417 -YSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYL 475

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M D  I  D    S+ L A +  ++   G  + LH  AIK GF  +I  S SL++ Y++
Sbjct: 476 QMQDADIKPDPFICSSLLNACANLSAYEQG--KQLHVHAIKFGFMCDIFASNSLVNMYAK 533

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG IE + + F +IP+  +V +++++ GY+++G G+EAL +   M++ G+ P+ +T + V
Sbjct: 534 CGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVPPNHITLVSV 593

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  CNH+G+V EG+  F  M+ ++GI   ++HY+CMID+LGR+G L++A EL+   P   
Sbjct: 594 LCACNHAGLVNEGKQYFEKMEVMFGIKPTQEHYACMIDLLGRSGKLNEAVELVNSIPFEA 653

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           D  +W +LL + R+H N  +G++ A +L +LEP     +  ++N Y+  G +E   ++R+
Sbjct: 654 DGFVWGALLGAARIHKNIELGQKAAKMLFDLEPEKSGTHVLLANIYASAGMWENVAKVRK 713

Query: 645 TALARKLTRDIGHSLIEVN 663
                K+ ++ G S IE+ 
Sbjct: 714 FMKDSKVKKEPGMSWIEIK 732



 Score =  241 bits (614), Expect = 1e-60,   Method: Compositional matrix adjust.
 Identities = 161/567 (28%), Positives = 288/567 (50%), Gaps = 8/567 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  + K      A+KL DE    D+V+++ L+SG  +    ++AL +++EM   G+K
Sbjct: 20  NHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVK 79

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TF SVL  CS       G ++H   +  GF  + ++ + LV +Y + G    +  L
Sbjct: 80  CNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGFESDGFVANTLVVMYAKCGLLDDSRRL 139

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F  + ERN+ +WN +   + +     E + ++ +M   G+ PN  S   ++  C+     
Sbjct: 140 FGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIMPNEFSISIILNACAGLQEG 199

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           D G+++H  ++K+G +D++ F ANALVD YS  G +  A   F  I   DV+SWN+I++ 
Sbjct: 200 DLGRKIHGLMLKMG-LDLDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAG 258

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
              +D    AL L   M+    RP++ +    L   +  G    G+Q+H  + K+   H 
Sbjct: 259 CVLHDCNDLALMLLDEMKGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMD-AHS 317

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            +     L DMY KC +++ +   ++S P + +   N+L++     G+  DAV +F  M 
Sbjct: 318 DLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMF 377

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            E I  ++ TLST LK  SV++   +  C+ +H  +IKSG  S+  V  SL+D Y +C H
Sbjct: 378 SEDIDFNQTTLSTVLK--SVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNH 435

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           I+ + ++FE+    ++V +TS++  YS+ G G EAL +   M    + PD      +L  
Sbjct: 436 IDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNA 495

Query: 528 CNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
           C +    ++G QL  +++K  +G   D    + +++M  + G ++ A+    + P  G  
Sbjct: 496 CANLSAYEQGKQLHVHAIK--FGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRG-I 552

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILM 613
           + WS+++     HG+     R+ N ++
Sbjct: 553 VSWSAMIGGYAQHGHGKEALRLFNQML 579



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 108/438 (24%), Positives = 215/438 (49%), Gaps = 3/438 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+ +S+N  +D + K+G +  A  +F ++   D+V++N +I+GC        AL L DEM
Sbjct: 216 LDQFSANALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEM 275

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G + +  T SS L  C+  GF   G Q+H  ++ +    +L+    LVD+Y +    
Sbjct: 276 KGSGTRPNMFTLSSALKACAAMGFKELGRQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMM 335

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   +D +P++++  WN ++  + +     + + +++KM +E ++ N  +   +++  
Sbjct: 336 DDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSV 395

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    +   KQ+H+  IK G +  + +V N+L+D Y  C  + EA K F+    +D++++
Sbjct: 396 ASLQAIKVCKQIHTISIKSG-IYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAY 454

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            S+++ Y+ Y    +AL+L+ +MQ    +P        LN  +       GKQ+H +  K
Sbjct: 455 TSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIK 514

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF    +   ++L +MY KC  IE +   F   P R +   ++++      G+ K+A+ 
Sbjct: 515 FGF-MCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALR 573

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M+ +G+  + +TL + L A + +   N G  +      +  G +        ++D 
Sbjct: 574 LFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGK-QYFEKMEVMFGIKPTQEHYACMIDL 632

Query: 462 YSRCGHIELSHQVFEKIP 479
             R G +  + ++   IP
Sbjct: 633 LGRSGKLNEAVELVNSIP 650



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 133/532 (25%), Positives = 260/532 (48%), Gaps = 17/532 (3%)

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           +++H  ++  GF  +  + + LV LY +      A  L DE  E ++ +W+ +L  + + 
Sbjct: 1   MELHAHLIKFGFSRDPSLRNHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQN 60

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              +E L ++N+M   GV+ N  +F  +++ CS+   L+ G+++H   +  G+ + + FV
Sbjct: 61  GFVEEALLVFNEMCLLGVKCNEFTFPSVLKACSMKRDLNMGRKVHGMAVVTGF-ESDGFV 119

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
           AN LV  Y+ CG L ++++ F  I   +V+SWN++ S Y   +L  +A+ LF  M     
Sbjct: 120 ANTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGI 179

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P+  S    LN  +       G++IHG + K+G D       +AL DMY K   IE +V
Sbjct: 180 MPNEFSISIILNACAGLQEGDLGRKIHGLMLKMGLDLDQFSA-NALVDMYSKAGEIEGAV 238

Query: 370 AVFESAPGRSLECCNSLMTS-LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           AVF+      +   N+++   +LH  N   A+ +   M   G   +  TLS+ LKA +  
Sbjct: 239 AVFQDIAHPDVVSWNAIIAGCVLHDCN-DLALMLLDEMKGSGTRPNMFTLSSALKACAAM 297

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
               LG  R LH   IK    S++  +  L+D YS+C  ++ + + ++ +P  +++ + +
Sbjct: 298 GFKELG--RQLHSSLIKMDAHSDLFAAVGLVDMYSKCEMMDDARRAYDSMPKKDIIAWNA 355

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSV 547
           +++GYS+ G   +A+ +   M    +  ++ T   VL        +K  + +   S+KS 
Sbjct: 356 LISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVASLQAIKVCKQIHTISIKS- 414

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
            GI +D    + ++D  G+   +D+A ++ ++     D + ++S++ +   +G+   G  
Sbjct: 415 -GIYSDFYVINSLLDTYGKCNHIDEASKIFEERT-WEDLVAYTSMITAYSQYGD---GEE 469

Query: 608 VANILMELEPVDFA----VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
              + ++++  D      + S + N  + +  +E   Q+   A+      DI
Sbjct: 470 ALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFGFMCDI 521



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 101/404 (25%), Positives = 197/404 (48%), Gaps = 21/404 (5%)

Query: 8   PRVRTITTLAPTCTSI------VPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
           P + T+++    C ++        L SSL+     + +   +++++   +D + K   ++
Sbjct: 282 PNMFTLSSALKACAAMGFKELGRQLHSSLI-----KMDAHSDLFAAVGLVDMYSKCEMMD 336

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            A++ +D MP +D++ +N LISG  +      A+ L+ +M S  I  + +T S+VL   +
Sbjct: 337 DARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFNQTTLSTVLKSVA 396

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
           +        QIH   +  G   + Y+ + L+D Y +      A  +F+E    +L  +  
Sbjct: 397 SLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEERTWEDLVAYTS 456

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+ A+ +    +E L++Y +M+   ++P+      ++  C+     ++GKQLH H IK G
Sbjct: 457 MITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQGKQLHVHAIKFG 516

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
           ++  +IF +N+LV+ Y+ CGS+ +A ++F  IP   ++SW++++  YA +    +AL LF
Sbjct: 517 FM-CDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLF 575

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ---SALTDM 358
            +M      P+  + V  L   +  G V  GKQ   Y  K+    G    Q   + + D+
Sbjct: 576 NQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQ---YFEKMEVMFGIKPTQEHYACMIDL 632

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            G+   +  +V +  S P    E    +  +LL +  I   +E+
Sbjct: 633 LGRSGKLNEAVELVNSIP---FEADGFVWGALLGAARIHKNIEL 673



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 146/300 (48%), Gaps = 8/300 (2%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSS----NRTIDDFVKSGHLNSAKKLFDE 69
           TTL+    S+  L +  +       + +  IYS     N  +D + K  H++ A K+F+E
Sbjct: 386 TTLSTVLKSVASLQAIKVCKQIHTISIKSGIYSDFYVINSLLDTYGKCNHIDEASKIFEE 445

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
               D+V Y  +I+   ++   ++AL LY +M    IK      SS+L+ C+N   Y +G
Sbjct: 446 RTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIKPDPFICSSLLNACANLSAYEQG 505

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            Q+H   +  GF  +++  + LV++Y + G    A   F E+P R + +W+ M+  + + 
Sbjct: 506 KQLHVHAIKFGFMCDIFASNSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQH 565

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
               E LR++N+M  +GV PN ++   ++  C+   L++EGKQ    +  +  +      
Sbjct: 566 GHGKEALRLFNQMLRDGVPPNHITLVSVLCACNHAGLVNEGKQYFEKMEVMFGIKPTQEH 625

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---IYADYDLIFDALELFFRMQ 305
              ++D     G L EA +  + IP + D   W +++    I+ + +L   A ++ F ++
Sbjct: 626 YACMIDLLGRSGKLNEAVELVNSIPFEADGFVWGALLGAARIHKNIELGQKAAKMLFDLE 685


>gi|359476188|ref|XP_002283446.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Vitis vinifera]
          Length = 829

 Score =  324 bits (831), Expect = 8e-86,   Method: Compositional matrix adjust.
 Identities = 193/625 (30%), Positives = 337/625 (53%), Gaps = 7/625 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +IY++N  I  + K G +  A K+F E   RD V++N +I+G     + + AL     M 
Sbjct: 33  SIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMK 92

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            +G      +F S+L   +  G+   G Q+H  ++ +G+  N++ GS L+D+Y +     
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A ++F  +  RN  TWN ++  + ++        + + M+ EGVE +  +F  ++    
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FIPVDDVISW 281
              L     Q+H+ ++K G +  +  V NA++  YS CGS+ +A++ FD  I   D+++W
Sbjct: 213 DPDLHKLTTQVHAKIVKHG-LASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTW 271

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NS+++ Y   +   +A +LF  MQ+    P I ++   ++ A    +   GK +HG V K
Sbjct: 272 NSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDIYTYTSVISAAFEGSHQGQGKSLHGLVIK 331

Query: 342 LGFDHGSVHVQSALTDMYGKCNV--IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            G +   V + ++L  MY K +   ++ ++ +FES   +     NS++T    SG  +DA
Sbjct: 332 RGLEF-LVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDA 390

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           ++ F  M  + + +D    S  L++ S  A+  LG  + +H   +KSGFE N  V+ SL+
Sbjct: 391 LKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLG--QQVHVLVLKSGFEPNGFVASSLI 448

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             YS+CG IE + + F+  P  + + + S++ GY+++G G+ ALD+  +M  R +  D +
Sbjct: 449 FMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHI 508

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL  C+H G+V+EG     SM+S YGI    +HY+CMID+LGRAG LD+A+ L++ 
Sbjct: 509 TFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEA 568

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D M+W +LL +CR  G+  +  +VA+ L+ELEP +   Y  +S+ +  +  +   
Sbjct: 569 MPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEK 628

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
             I+     R + +  G S IEV +
Sbjct: 629 ASIKRLMKERGVKKVPGWSWIEVKN 653



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 227/488 (46%), Gaps = 12/488 (2%)

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           LS  S    Y   +  HC  +  G   ++Y  + ++  Y + G    A  +F E  +R+ 
Sbjct: 7   LSQSSFTALYRASVN-HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDA 65

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +WN M+  F  L   +  L     MK  G   +G SF  +++G +    ++ G+Q+HS 
Sbjct: 66  VSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSM 125

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           ++K+G+ + N+F  +AL+D Y+ C  + +A + F  I + + ++WN+++S YA       
Sbjct: 126 MVKMGY-EGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGT 184

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A  L   M+L        +F   L             Q+H  + K G    +  V +A+ 
Sbjct: 185 AFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTT-VCNAII 243

Query: 357 DMYGKCNVIESSVAVFESA-PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
             Y +C  IE +  VF+ A   R L   NS++ + L +   ++A ++F  M   G   D 
Sbjct: 244 TAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFQLFLEMQVLGFEPDI 303

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY--SRCGHIELSHQ 473
            T ++ + A      ++ G  + LH   IK G E  + +S SL+  Y  S    ++ +  
Sbjct: 304 YTYTSVISA--AFEGSHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALN 361

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +FE + + + V + SI+ G+S++G+  +AL   E M  + ++ D   F  VL  C+    
Sbjct: 362 IFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLAT 421

Query: 534 VKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           ++ GQ V    +KS  G + +    S +I M  + G+++ A +    TP     + W+SL
Sbjct: 422 LQLGQQVHVLVLKS--GFEPNGFVASSLIFMYSKCGVIEDARKSFDATP-KDSSIAWNSL 478

Query: 593 LRSCRVHG 600
           +     HG
Sbjct: 479 IFGYAQHG 486



 Score = 66.6 bits (161), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L +LS S+   L    + HC AIKSG  ++I  + +++  Y++CG I ++ ++F +    
Sbjct: 4   LHSLSQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQR 63

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           + V + +++ G+   G    AL+ L+ M + G   D  +F  +L G    G V+ GQ V 
Sbjct: 64  DAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQV- 122

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +SM    G + +    S ++DM  +   ++ A E+  ++    + + W++L     + G 
Sbjct: 123 HSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVF-KSINIRNSVTWNAL-----ISGY 176

Query: 602 EIIGRRVANIL----MELEPVD 619
             +G R         MELE V+
Sbjct: 177 AQVGDRGTAFWLLDCMELEGVE 198


>gi|357510605|ref|XP_003625591.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355500606|gb|AES81809.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 887

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 191/654 (29%), Positives = 346/654 (52%), Gaps = 7/654 (1%)

Query: 12  TITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T T+L   C +   L  +  + D   + N Q +I   N  I+ + K G +  A+K+FD M
Sbjct: 161 TYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGSMKDARKVFDTM 220

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
              ++V++  +ISG  +      A+ +Y +M   G      TF SV+  C  AG    G 
Sbjct: 221 QLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKACYIAGDIDLGR 280

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  V+   FG +L   + L+ +Y   G    A ++F  +P ++L +W  M+  + +L 
Sbjct: 281 QLHAHVIKSWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLISWGTMITGYIQLG 340

Query: 191 RPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              E L ++  +  +G  +PN   F  +   CS  + L+ GKQ+H   +K G +  N+F 
Sbjct: 341 YRVEALYLFRDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHGMCVKFG-LRRNVFA 399

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             +L D Y+  G L  AK +F  I   D++SWN+I++ +AD     +A++ F +M     
Sbjct: 400 GCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDANEAIDFFRQMIHIGL 459

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P   +++  L        +  G+QIH Y+ K+GFD   + V ++L  MY KC+ +  ++
Sbjct: 460 TPDSITYISLLCTCGSPVRLNQGRQIHSYIVKIGFDK-EITVCNSLLTMYTKCSHLHDAL 518

Query: 370 AVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            VF   +   +L   N+++++ L      +   ++  M   G   D +T++T L   + +
Sbjct: 519 NVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKPDSITITTLLG--TCA 576

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
              +LG    +HC +IKSG   +++V   L+D Y++CG ++ +  VF+   + ++V ++S
Sbjct: 577 ELTSLGVGNQVHCYSIKSGLILDVSVCNGLIDMYAKCGSLKHARDVFDSTQNLDIVSWSS 636

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY++ G+G EAL++  +M   G+ P++VT+L  L+ C+H G+V+EG  ++ SM++ +
Sbjct: 637 LIVGYAQCGLGHEALNLFRIMTNLGVQPNEVTYLGALSACSHIGLVEEGWRLYKSMETEH 696

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           GI   R+H+SC++D+L RAG L +AE  +Q++    D   W +LL +C+ H N  I  R 
Sbjct: 697 GIPPTREHFSCIVDLLARAGCLHEAETFIQKSGLDADITAWKTLLAACKTHNNVDIAERG 756

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           A  +++L+P + A    + N ++  G +E   ++R+      + +  G S IEV
Sbjct: 757 AGNILKLDPSNSAAMVMLCNIHASAGNWEEVAKLRKLMKQMGVQKVPGQSWIEV 810



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 147/558 (26%), Positives = 264/558 (47%), Gaps = 20/558 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD-E 100
           + I+S  R +  +VK   L  A  +F  + ++++ T + +I  C K  H K+AL  +D  
Sbjct: 95  MTIHSVFRRMYSYVKPS-LQPA--IFSNL-SKELPTNSYIIFLC-KQHHYKEALEAFDFH 149

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           + +       ST++S++  C+N        +IH  VL   +  ++ + + ++++Y + G 
Sbjct: 150 LKNSNSHFEPSTYTSLVLACANFRSLDYAKKIHDHVLKSNYQPSIILQNHMINMYGKCGS 209

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +   N+ +W  M+  + +  + ++ + MY +M   G  P+ L+F  +++ 
Sbjct: 210 MKDARKVFDTMQLPNVVSWTSMISGYSQNGQANDAIIMYIQMTRSGQFPDQLTFGSVIKA 269

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C I   +D G+QLH+HVIK  W   ++   NAL+  Y+  G +  A   F  IP  D+IS
Sbjct: 270 CYIAGDIDLGRQLHAHVIK-SWFGHHLTSQNALISMYTNFGQIEHASNVFTRIPTKDLIS 328

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK---RPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           W ++++ Y       +AL LF    L R+   +P+   F    +  S    + +GKQ+HG
Sbjct: 329 WGTMITGYIQLGYRVEALYLF--RDLLRQGTYQPNEFIFGSVFSACSSLLELEYGKQVHG 386

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
              K G    +V    +L DMY K   + S+   F       +   N+++ +   +G+  
Sbjct: 387 MCVKFGLRR-NVFAGCSLCDMYAKFGFLPSAKMAFCQIKNPDIVSWNAIIAAFADNGDAN 445

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A++ F  M+  G+  D +T  + L         N G  R +H   +K GF+  I V  S
Sbjct: 446 EAIDFFRQMIHIGLTPDSITYISLLCTCGSPVRLNQG--RQIHSYIVKIGFDKEITVCNS 503

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           L+  Y++C H+  +  VF  I  + N+V + +I++   +     E   + + M   G  P
Sbjct: 504 LLTMYTKCSHLHDALNVFRDISRNANLVSWNAILSACLQKKQEGETFRLYKEMHFSGNKP 563

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           D +T   +L  C     +  G  V   S+KS  G+  D    + +IDM  + G L  A +
Sbjct: 564 DSITITTLLGTCAELTSLGVGNQVHCYSIKS--GLILDVSVCNGLIDMYAKCGSLKHARD 621

Query: 576 LLQQTPGGGDCMMWSSLL 593
           +   T    D + WSSL+
Sbjct: 622 VFDSTQ-NLDIVSWSSLI 638


>gi|449445041|ref|XP_004140282.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
 gi|449481162|ref|XP_004156100.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Cucumis sativus]
          Length = 693

 Score =  324 bits (831), Expect = 9e-86,   Method: Compositional matrix adjust.
 Identities = 198/658 (30%), Positives = 352/658 (53%), Gaps = 10/658 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF--D 68
           T+ +   TCTS   L    L+         Q NI  S   I  +       SA+ +F  +
Sbjct: 5   TLLSALRTCTSSKLLKQGKLIHQRIFSCGFQSNIVLSKSLIGFYFSCHDYASAELVFQTN 64

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAGFYT 127
           + P  D+  +N L+S         +AL L+D++  +  ++    T+  VL  C   G   
Sbjct: 65  DCPL-DVSLWNALLSAYTNNFRFVEALQLFDQLNCNSYVRPDFYTYPVVLKACGGLGRVI 123

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            G +IH  +L  G   ++++GS L+++Y +    V A+ LFDE P+R++  WN ++  + 
Sbjct: 124 YGRRIHNHLLKTGLIWDVFVGSSLMNMYAKCDQFVDAIKLFDEFPQRDVGCWNAVISCYF 183

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +  + +  L+ ++KMK  G EPN ++F  +V  C+  + L+ GK++H  +I+   + ++ 
Sbjct: 184 KDGKAEMALKTFDKMKELGFEPNSVTFTVVVSSCTRLLNLERGKEVHRELIERR-ILLDA 242

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV +ALVD Y  CG L  AK+ F+ IP  + I+WN++++ Y+        +EL  RM   
Sbjct: 243 FVLSALVDMYGKCGCLEMAKEVFEKIPRKNAITWNAMITGYSLKGDSRSCIELLMRMNDE 302

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             +P++ +    +  +SR+  +  GK IHGY+ +   D   + +  +L D Y KC  + S
Sbjct: 303 GTKPTLMTLTSIIYASSRSVQLRHGKFIHGYILRNRID-VDIFIDVSLIDFYFKCGYVSS 361

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  +F +     +   N +++  +  GN   A+ ++  M +  +  D +T S+TL A S 
Sbjct: 362 AETIFRTISKNEVVSWNVMISGHVMVGNHIQALHIYDNMKEHHVKPDALTFSSTLSACSQ 421

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
            A+ + G  R LH C I    E+N  V  +L+D Y++CG ++ + ++F ++P  ++V +T
Sbjct: 422 LAALDKG--RELHYCIINHKLEANEIVMGALLDMYAKCGDVDEARKLFHQLPKRDLVSWT 479

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           S++  Y  +G   EAL + + M +  +  D VTFL VL+ C+H+G+V EG + FN M   
Sbjct: 480 SMIFAYGSHGQASEALRLFDEMQKLNVRADSVTFLAVLSACSHAGLVDEGYMYFNEMVVQ 539

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG-GDCMMWSSLLRSCRVHGNEIIGR 606
           Y I    +HYSC+ID+LGRAG L +A E+LQ++     D  + S+L  +C +H N ++G 
Sbjct: 540 YDIKPGIEHYSCLIDLLGRAGRLHEAYEILQRSKETRSDIGLLSTLFSACLLHNNFVLGI 599

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           ++  +L+E++P D + Y  +SN Y+ + +++   ++R       L +  G S IE+N 
Sbjct: 600 QIGKMLIEVDPDDPSTYILLSNMYASVNKWDEVRKVRRKMKELGLKKSPGCSWIEINQ 657


>gi|359475558|ref|XP_003631701.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Vitis vinifera]
          Length = 848

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 190/655 (29%), Positives = 354/655 (54%), Gaps = 17/655 (2%)

Query: 14  TTLAPTCTSIV---PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
            +L  +CT  +    L + L++    Q N     + S R ++ +   G ++ ++  FD++
Sbjct: 80  NSLFDSCTKTLLAKRLHALLVVSGKIQSN-----FISIRLVNLYASLGDVSLSRGTFDQI 134

Query: 71  PARDMVTYNLLISGCGKFRHPKQALY-LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
             +D+ T+N +IS   +  H ++A+   Y  ++    +    TF  VL  C       +G
Sbjct: 135 QRKDVYTWNSMISAYVRNGHFREAIDCFYQLLLVTKFQADFYTFPPVLKACQT---LVDG 191

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            +IHC V  LGF  ++++ + L+ +Y R G    A  LFD++P R++ +WN M+    + 
Sbjct: 192 RKIHCWVFKLGFQWDVFVAASLIHMYSRFGFVGIARSLFDDMPFRDMGSWNAMISGLIQN 251

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
               + L + ++M+ EG+  + ++   ++  C+    +     +H +VIK G ++  +FV
Sbjct: 252 GNAAQALDVLDEMRLEGINMDSVTVASILPVCAQLGDISTATLIHLYVIKHG-LEFELFV 310

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
           +NAL++ Y+  G+L +A+K F  + + DV+SWNSI++ Y   D    A   FF+MQL   
Sbjct: 311 SNALINMYAKFGNLGDAQKVFQQMFLRDVVSWNSIIAAYEQNDDPVTARGFFFKMQLNGL 370

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P + + V   + A+++ +    + +HG++ + G+   +V + +A+ DMY K  VI+S+ 
Sbjct: 371 EPDLLTLVSLASIAAQSRDYKNSRSVHGFIMRRGWLMEAVVIGNAVMDMYAKLGVIDSAH 430

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVS 428
            VF   P + +   N+L++    +G   +A+E++  M +   I L++ T  + L A +  
Sbjct: 431 KVFNLIPVKDVVSWNTLISGYTQNGLASEAIEVYRMMEECREIKLNQGTWVSILAAYAHV 490

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            +   G    +H   IK+    ++ V   L+D Y +CG +  +  +F ++P  + V + +
Sbjct: 491 GALQQG--MRIHGHLIKTNLHLDVFVGTCLIDLYGKCGRLVDAMCLFYQVPRESSVPWNA 548

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           I++ +  +G G +AL +   M   G+ PD VTF+ +L+ C+HSG+V EG+  F+ M+  Y
Sbjct: 549 IISCHGIHGHGEKALKLFREMQDEGVKPDHVTFISLLSACSHSGLVDEGKWFFHLMQE-Y 607

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           GI    +HY CM+D+LGRAG L+ A + ++  P   D  +W +LL +CR+HGN  +G+  
Sbjct: 608 GIKPSLKHYGCMVDLLGRAGFLEMAYDFIKDMPLHPDASIWGALLGACRIHGNIELGKFA 667

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           ++ L E++  +   Y  +SN Y+ +G++E   ++R  A  R L +  G S IEVN
Sbjct: 668 SDRLFEVDSENVGYYVLLSNIYANVGKWEGVDKVRSLARERGLKKTPGWSSIEVN 722


>gi|297800922|ref|XP_002868345.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297314181|gb|EFH44604.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1047

 Score =  324 bits (830), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 194/625 (31%), Positives = 325/625 (52%), Gaps = 5/625 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N  +  +   G L SA+ +F  M  RD VTYN LI+G  +  + ++A+ L+  M 
Sbjct: 305 DTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQ 364

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++  ++T +S++  CS+ G    G Q+H     LGF  N  I   L++LY +     
Sbjct: 365 LDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFASNDKIEGALLNLYAKCSDIE 424

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            AL+ F E    N+  WN+ML A+  L       R++ +M+ E + PN  ++  +++ C 
Sbjct: 425 TALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCI 484

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ G+Q+HS +IK  +  +N +V + L+D Y+  G L  A          DV+SW 
Sbjct: 485 RLGDLELGEQIHSQIIKTSF-QLNAYVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWT 543

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y  Y+    AL  F +M     R         ++  +    +  G+QIH      
Sbjct: 544 TMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSACAGLQALKEGQQIHAQACVS 603

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF    +  Q+AL  +Y KC  IE +   FE          N+L++    SGN ++A+ +
Sbjct: 604 GFS-SDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRV 662

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EGI  +  T  + +KA   S +AN+   + +H    K+G++S   V  +++  Y
Sbjct: 663 FARMNREGIDSNNFTFGSAVKA--ASETANMKQGKQVHAVITKTGYDSETEVCNAIISMY 720

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG I  + + F ++   N V + +++N YS++G G EALD  + MI   + P+ VT +
Sbjct: 721 AKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALDSFDQMIHSNVRPNHVTLV 780

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C+H G+V +G   F SM + YG+    +HY C++DML RAG+L +A++ + + P 
Sbjct: 781 GVLSACSHIGLVDKGIEYFESMNTEYGLAPKPEHYVCVVDMLTRAGLLSRAKDFILEMPI 840

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D ++W +LL +C VH N  IG   A+ L+ELEP D A Y  +SN Y+   +++     
Sbjct: 841 EPDALVWRTLLSACVVHKNMEIGEFAAHHLLELEPEDSATYVLLSNLYAVCRKWDARDLT 900

Query: 643 RETALARKLTRDIGHSLIEV-NSCH 666
           R+    + + ++ G S IEV NS H
Sbjct: 901 RQKMKEKGVKKEPGQSWIEVKNSIH 925



 Score =  232 bits (591), Expect = 5e-58,   Method: Compositional matrix adjust.
 Identities = 154/563 (27%), Positives = 278/563 (49%), Gaps = 7/563 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           S + +D ++  G L+ A K+FDEMP R + T+N +I          +   L+  MV+  +
Sbjct: 106 SEKLLDFYLFKGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENV 165

Query: 107 KESASTFSSVLSVCSNAGFYTEGI-QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
             +  TFS VL  C       + + QIH R++  G G +  + +PL+DLY R G   RA 
Sbjct: 166 TPNEGTFSGVLEACRGGSVAFDVVEQIHARIIYQGLGKSTIVCNPLIDLYSRNGFVDRAR 225

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FD L  ++ ++W  M+    +     E +R++  M   G+ P   +F  ++  C    
Sbjct: 226 RVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIE 285

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L+ G+QLH  V+KLG+   + +V NALV  Y   GSLI A+  F  +   D +++N+++
Sbjct: 286 SLEIGEQLHGLVLKLGF-SSDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLI 344

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           +  +       A+ELF RMQL    P   +    +   S  G ++ G+Q+H Y TKLGF 
Sbjct: 345 NGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTLFSGQQLHAYTTKLGFA 404

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
                ++ AL ++Y KC+ IE+++  F      ++   N ++ +     +++++  +F  
Sbjct: 405 SND-KIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQ 463

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  E I  ++ T  + LK         LG    +H   IK+ F+ N  V   L+D Y++ 
Sbjct: 464 MQIEEIVPNQYTYPSILKTCIRLGDLELG--EQIHSQIIKTSFQLNAYVCSVLIDMYAKL 521

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ +  +  +    +VV +T+++ GY++     +AL     M+ RG+  D+V     +
Sbjct: 522 GKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAV 581

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C     +KEGQ + ++   V G  +D    + ++ +  + G +++A    +QT   GD
Sbjct: 582 SACAGLQALKEGQQI-HAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTE-AGD 639

Query: 586 CMMWSSLLRSCRVHGNEIIGRRV 608
            + W++L+   +  GN     RV
Sbjct: 640 NIAWNALVSGFQQSGNNEEALRV 662



 Score =  224 bits (572), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 143/556 (25%), Positives = 284/556 (51%), Gaps = 12/556 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + ++G ++ A+++FD +  +D  ++  +ISG  K     +A+ L+ +M   GI 
Sbjct: 209 NPLIDLYSRNGFVDRARRVFDGLYLKDHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIM 268

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +   FSSVLS C        G Q+H  VL LGF  + Y+ + LV LY  +G  + A  +
Sbjct: 269 PTPYAFSSVLSACKKIESLEIGEQLHGLVLKLGFSSDTYVCNALVSLYFHLGSLISAEHI 328

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F  + +R+  T+N ++    +    ++ + ++ +M+ +G+EP+  +   +V  CS    L
Sbjct: 329 FSNMSQRDAVTYNTLINGLSQCGYGEKAMELFKRMQLDGLEPDSNTLASLVVACSSDGTL 388

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G+QLH++  KLG+   N  +  AL++ Y+ C  +  A   F    V++V+ WN ++  
Sbjct: 389 FSGQQLHAYTTKLGFAS-NDKIEGALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVA 447

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y   D + ++  +F +MQ+    P+  ++   L    R G++  G+QIH  + K  F   
Sbjct: 448 YGLLDDLRNSFRIFRQMQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLN 507

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           + +V S L DMY K   ++++  +     G+ +    +++           A+  F  M+
Sbjct: 508 A-YVCSVLIDMYAKLGKLDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQML 566

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSR 464
           D GI  DEV L+      +VSA A L + +    +H  A  SGF S++    +L+  YS+
Sbjct: 567 DRGIRSDEVGLTN-----AVSACAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSK 621

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG+IE ++  FE+  + + + + ++++G+ ++G   EAL +   M + G+  +  TF   
Sbjct: 622 CGNIEEAYLAFEQTEAGDNIAWNALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSA 681

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           +   + +  +K+G+ V +++ +  G D++ +  + +I M  + G +  A++   +     
Sbjct: 682 VKAASETANMKQGKQV-HAVITKTGYDSETEVCNAIISMYAKCGSISDAKKQFLELSMKN 740

Query: 585 DCMMWSSLLRSCRVHG 600
           + + W++++ +   HG
Sbjct: 741 E-VSWNAMINAYSKHG 755



 Score =  191 bits (485), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 251/500 (50%), Gaps = 14/500 (2%)

Query: 99  DEMVSHGIKESASTFSSVLSVC-SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           D + + GI+ +  T   +L  C    G   EG ++H ++L LGF  N  +   L+D Y+ 
Sbjct: 56  DSVENCGIRPNHQTLKWLLEGCLKTNGSLDEGRKLHSQILKLGFDNNACLSEKLLDFYLF 115

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    AL +FDE+PER + TWN M++     S   +V  ++ +M  E V PN  +F  +
Sbjct: 116 KGDLDGALKVFDEMPERTIFTWNKMIKELASRSLSGKVFCLFGRMVNENVTPNEGTFSGV 175

Query: 218 VRGCSIG-MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +  C  G +  D  +Q+H+ +I  G +  +  V N L+D YS  G +  A++ FD + + 
Sbjct: 176 LEACRGGSVAFDVVEQIHARIIYQG-LGKSTIVCNPLIDLYSRNGFVDRARRVFDGLYLK 234

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D  SW +++S  +  +   +A+ LF  M +    P+  +F   L+   +  ++  G+Q+H
Sbjct: 235 DHSSWVAMISGLSKNECEVEAIRLFCDMYVLGIMPTPYAFSSVLSACKKIESLEIGEQLH 294

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G V KLGF     +V +AL  +Y     + S+  +F +   R     N+L+  L   G  
Sbjct: 295 GLVLKLGFS-SDTYVCNALVSLYFHLGSLISAEHIFSNMSQRDAVTYNTLINGLSQCGYG 353

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + A+E+F  M  +G+  D  TL++ +  ++ S+   L S + LH    K GF SN  +  
Sbjct: 354 EKAMELFKRMQLDGLEPDSNTLASLV--VACSSDGTLFSGQQLHAYTTKLGFASNDKIEG 411

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L++ Y++C  IE +   F +    NVV +  ++  Y      R +  +   M    ++P
Sbjct: 412 ALLNLYAKCSDIETALNYFLETEVENVVLWNVMLVAYGLLDDLRNSFRIFRQMQIEEIVP 471

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSC--MIDMLGRAGILDKA 573
           ++ T+  +L  C   G ++ G+ + +  +K+ + ++A    Y C  +IDM  + G LD A
Sbjct: 472 NQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNA----YVCSVLIDMYAKLGKLDTA 527

Query: 574 EELLQQTPGGGDCMMWSSLL 593
            ++L +   G D + W++++
Sbjct: 528 WDILIRF-AGKDVVSWTTMI 546



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 89/330 (26%), Positives = 165/330 (50%), Gaps = 2/330 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M   +++P   T  ++  TC  +  L     + S   + + QLN Y  +  ID + K G 
Sbjct: 464 MQIEEIVPNQYTYPSILKTCIRLGDLELGEQIHSQIIKTSFQLNAYVCSVLIDMYAKLGK 523

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L++A  +      +D+V++  +I+G  ++    +AL  + +M+  GI+      ++ +S 
Sbjct: 524 LDTAWDILIRFAGKDVVSWTTMIAGYTQYNFDDKALTTFRQMLDRGIRSDEVGLTNAVSA 583

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+      EG QIH +    GF  +L   + LV LY + G    A   F++    +   W
Sbjct: 584 CAGLQALKEGQQIHAQACVSGFSSDLPFQNALVTLYSKCGNIEEAYLAFEQTEAGDNIAW 643

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  F +    +E LR++ +M  EG++ N  +F   V+  S    + +GKQ+H+ + K
Sbjct: 644 NALVSGFQQSGNNEEALRVFARMNREGIDSNNFTFGSAVKAASETANMKQGKQVHAVITK 703

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ D    V NA++  Y+ CGS+ +AKK F  + + + +SWN++++ Y+ +    +AL+
Sbjct: 704 TGY-DSETEVCNAIISMYAKCGSISDAKKQFLELSMKNEVSWNAMINAYSKHGFGSEALD 762

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
            F +M     RP+  + V  L+  S  G V
Sbjct: 763 SFDQMIHSNVRPNHVTLVGVLSACSHIGLV 792


>gi|225436683|ref|XP_002262885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 866

 Score =  323 bits (829), Expect = 1e-85,   Method: Compositional matrix adjust.
 Identities = 188/616 (30%), Positives = 343/616 (55%), Gaps = 10/616 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K+  +   +++FDEM  +++V++  L++G  +    +QAL L+ +M   GIK + 
Sbjct: 134 VDMYMKTESVEDGERVFDEMRVKNVVSWTSLLAGYRQNGLNEQALKLFSQMQLEGIKPNP 193

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF++VL   +  G   +G+Q+H  V+  G    +++G+ +V++Y +      A  +FD 
Sbjct: 194 FTFAAVLGGLAADGAVEKGVQVHTMVIKSGLDSTIFVGNSMVNMYSKSLMVSDAKAVFDS 253

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  RN  +WN M+  F       E   ++ +M+ EGV+     F  +++ C+    +   
Sbjct: 254 MENRNAVSWNSMIAGFVTNGLDLEAFELFYRMRLEGVKLTQTIFATVIKLCANIKEMSFA 313

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYA 289
           KQLH  VIK G  D ++ +  AL+  YS C  + +A K F  +  V +V+SW +I+S Y 
Sbjct: 314 KQLHCQVIKNG-SDFDLNIKTALMVAYSKCSEIDDAFKLFCMMHGVQNVVSWTAIISGYV 372

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG-KQIHGYVTKLGFDHGS 348
                  A+ LF +M+    RP+  ++   L     T N      QIH  V K  +++ S
Sbjct: 373 QNGRTDRAMNLFCQMRREGVRPNHFTYSTIL-----TANAAVSPSQIHALVVKTNYEN-S 426

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             V +AL+D Y K      +  +FE    + +   +++++     G+I+ AV++F  +  
Sbjct: 427 PSVGTALSDSYSKIGDANEAAKIFELIDEKDIVAWSAMLSGYAQMGDIEGAVKIFLQLAK 486

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           EG+  +E T S+ L A + + +A++   +  H C+IKSGF + + VS +L+  Y++ G+I
Sbjct: 487 EGVEPNEFTFSSVLNACA-APTASVEQGKQFHSCSIKSGFSNALCVSSALVTMYAKRGNI 545

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           E +++VF++    ++V + S+++GY+++G G+++L + E M  + L  D +TF+ V++ C
Sbjct: 546 ESANEVFKRQVDRDLVSWNSMISGYAQHGCGKKSLKIFEEMRSKNLELDGITFIGVISAC 605

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
            H+G+V EGQ  F+ M   Y I    +HYSCM+D+  RAG+L+KA +L+ + P      +
Sbjct: 606 THAGLVNEGQRYFDLMVKDYHIVPTMEHYSCMVDLYSRAGMLEKAMDLINKMPFPAGATI 665

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W +LL +CRVH N  +G   A  L+ L+P D A Y  +SN Y+  G ++   ++R+    
Sbjct: 666 WRTLLAACRVHLNVQLGELAAEKLISLQPQDSAAYVLLSNIYATAGNWQERAKVRKLMDM 725

Query: 649 RKLTRDIGHSLIEVNS 664
           +K+ ++ G+S IEV +
Sbjct: 726 KKVKKEAGYSWIEVKN 741



 Score =  222 bits (565), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 147/555 (26%), Positives = 285/555 (51%), Gaps = 15/555 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           +++LFDE P + +   N L+    +    K+AL L+  +   G     S+ S VL VC  
Sbjct: 45  SQQLFDETPQQGLSRNNHLLFEFSRNDQNKEALNLFLGLRRSGSPTDGSSLSCVLKVCGC 104

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G Q+HC+ +  GF  ++ +G+ LVD+YM+         +FDE+  +N+ +W  +
Sbjct: 105 LFDRIVGKQVHCQCIKCGFVEDVSVGTSLVDMYMKTESVEDGERVFDEMRVKNVVSWTSL 164

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           L  + +    ++ L+++++M+ EG++PN  +F  ++ G +    +++G Q+H+ VIK G 
Sbjct: 165 LAGYRQNGLNEQALKLFSQMQLEGIKPNPFTFAAVLGGLAADGAVEKGVQVHTMVIKSG- 223

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           +D  IFV N++V+ YS    + +AK  FD +   + +SWNS+++ +    L  +A ELF+
Sbjct: 224 LDSTIFVGNSMVNMYSKSLMVSDAKAVFDSMENRNAVSWNSMIAGFVTNGLDLEAFELFY 283

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           RM+L   + +   F   +   +    + F KQ+H  V K G D   +++++AL   Y KC
Sbjct: 284 RMRLEGVKLTQTIFATVIKLCANIKEMSFAKQLHCQVIKNGSDF-DLNIKTALMVAYSKC 342

Query: 363 NVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           + I+ +  +F    G +++    ++++  + +G    A+ +F  M  EG+  +  T ST 
Sbjct: 343 SEIDDAFKLFCMMHGVQNVVSWTAIISGYVQNGRTDRAMNLFCQMRREGVRPNHFTYSTI 402

Query: 422 LKA-LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
           L A  +VS S        +H   +K+ +E++ +V  +L D+YS+ G    + ++FE I  
Sbjct: 403 LTANAAVSPSQ-------IHALVVKTNYENSPSVGTALSDSYSKIGDANEAAKIFELIDE 455

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            ++V ++++++GY++ G    A+ +   + + G+ P++ TF  VL  C       E    
Sbjct: 456 KDIVAWSAMLSGYAQMGDIEGAVKIFLQLAKEGVEPNEFTFSSVLNACAAPTASVEQGKQ 515

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F+S     G        S ++ M  + G ++ A E+ ++     D + W+S++     HG
Sbjct: 516 FHSCSIKSGFSNALCVSSALVTMYAKRGNIESANEVFKRQV-DRDLVSWNSMISGYAQHG 574

Query: 601 NEIIGRRVANILMEL 615
               G++   I  E+
Sbjct: 575 ---CGKKSLKIFEEM 586


>gi|297815974|ref|XP_002875870.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321708|gb|EFH52129.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 700

 Score =  323 bits (829), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 185/663 (27%), Positives = 346/663 (52%), Gaps = 13/663 (1%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           ++  VR   T+   CT+ + L     L+   +   Q+  + +N  +   + +G+L  A++
Sbjct: 1   MILSVRNGGTIQRFCTASISL-----LEKPVEKTIQVVTFDTNSHLRSLINAGNLRVARQ 55

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM--VSHGIKESASTFSSVLSVCSNA 123
           +FD+MP RD+V++  +I G     +  +A+ L+  M  V   +    S  S VL  C  +
Sbjct: 56  VFDKMPHRDIVSWTAIIKGYVTANNSDEAMILFSAMRVVDPAVSPDTSVVSVVLKACGQS 115

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                G  +H   +      ++++GS L+D+Y R+G   ++  +F E+P RN  TW  ++
Sbjct: 116 SNIAYGESLHAYAVKTSLLSSVFVGSSLLDMYKRVGKIEKSCRVFSEMPFRNAVTWTAII 175

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
                  R  E L  +++M +     +  +F   ++ C+    +  GKQ+H+HVI  G+ 
Sbjct: 176 TGLVHAGRYKEGLTYFSEMSSSEELSDTFTFAIALKACAGLRQVKYGKQIHTHVIVRGF- 234

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           D  ++VAN+L   Y+ CG + +    F+ +   DV+SW S++  Y        A+E F +
Sbjct: 235 DATVWVANSLATMYTECGEMRDGLCLFENMSERDVVSWTSLIVAYNRIGHEEKAVETFIK 294

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M+  +  P+ ++F    +  +    + +G+Q+H  V  LG +  S+ V +++  MY  C 
Sbjct: 295 MRNSQVPPNEQTFATMFSACASLSRLVWGEQLHCNVFSLGLND-SLSVSNSMMKMYSTCG 353

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            ++S+  +F+    R +   ++++     +G  ++A + F +M   G    +  L++ L 
Sbjct: 354 KLDSASVLFQGMRCRDIISWSTIIGGYSQAGFGEEAFKYFSWMRQSGPKPTDFALASLL- 412

Query: 424 ALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
             SVS + A L   R +H  A   G E N  V  +L++ YS+CG+I+ + ++FE+    +
Sbjct: 413 --SVSGNMAVLEGGRQVHALAFCFGLEQNSTVRSTLINMYSKCGNIKEASKIFEETDRDD 470

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V  T+++NGY+ +G  +EA+D+ E  ++ G  PD VTF+ VL  C HSG +  G   FN
Sbjct: 471 IVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFSPDSVTFISVLTACTHSGQLDLGFHYFN 530

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            M+  Y +   ++HY CM+D+L RAG L +AE+++ +     D ++W++LL +C+  G+ 
Sbjct: 531 LMQEKYNMRPAKEHYGCMVDLLCRAGRLSEAEKMIDEMSWKKDDVVWTTLLIACKAKGDI 590

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
             GRR A  ++EL+P        ++N YS  G  E +  +R+   A+ + ++ G S I++
Sbjct: 591 ERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIKI 650

Query: 663 NSC 665
             C
Sbjct: 651 KDC 653


>gi|147795292|emb|CAN64990.1| hypothetical protein VITISV_001772 [Vitis vinifera]
          Length = 891

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 182/623 (29%), Positives = 342/623 (54%), Gaps = 9/623 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY-LYDEM 101
           +I+ S R ++ +   G ++ ++  FD++P +D+ T+N +IS      H  +A+   Y  +
Sbjct: 150 SIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGHFHEAIGCFYQLL 209

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +   I+    TF  VL  C   G   +G +IHC    LGF  N+++ + L+ +Y R G +
Sbjct: 210 LVSEIRPDFYTFPPVLKAC---GTLVDGRRIHCWAFKLGFQWNVFVAASLIHMYSRFGFT 266

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LFD++P R++ +WN M+    +     + L + ++M+ EG++ N ++   ++  C
Sbjct: 267 GIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIKMNFVTVVSILPVC 326

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                +     +H +VIK G ++ ++FV+NAL++ Y+  G+L +A+K+F  + + DV+SW
Sbjct: 327 PQLGDISTAMLIHLYVIKHG-LEFDLFVSNALINMYAKFGNLEDARKAFQQMFITDVVSW 385

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NSI++ Y   D    A   F +MQL   +P + + V   +  +++ +    + +HG++ +
Sbjct: 386 NSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQSRDCKNSRSVHGFIMR 445

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G+    V + +A+ DMY K  +++S+  VFE    + +   N+L+T    +G   +A+E
Sbjct: 446 RGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNTLITGYAQNGLASEAIE 505

Query: 402 MFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++  M + + I  ++ T  + L A +   +   G    +H   IK+    ++ V+  L+D
Sbjct: 506 VYKMMEECKEIIPNQGTWVSILPAYAHVGALQQG--MRIHGRVIKTNLHLDVFVATCLID 563

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +CG +  +  +F ++P  + V + +I++ +  +G   + L +   M+  G+ PD VT
Sbjct: 564 VYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVT 623

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ +L+ C+HSG V+EG+  F  M+  YGI    +HY CM+D+LGRAG L+ A   ++  
Sbjct: 624 FVSLLSACSHSGFVEEGKWCFRLMQE-YGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDM 682

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D  +W +LL +CR+HGN  +G+  ++ L E++  +   Y  +SN Y+ +G++E   
Sbjct: 683 PLQPDASIWGALLGACRIHGNIELGKFASDRLFEVDSKNVGYYVLLSNIYANVGKWEGVD 742

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
           ++R  A  R L +  G S IEVN
Sbjct: 743 KVRSLARERGLKKTPGWSTIEVN 765



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 133/473 (28%), Positives = 242/473 (51%), Gaps = 12/473 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q N++ +   I  + + G    A+ LFD+MP RDM ++N +ISG  +  +  QAL + DE
Sbjct: 247 QWNVFVAASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDE 306

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   GIK +  T  S+L VC   G  +  + IH  V+  G   +L++ + L+++Y + G 
Sbjct: 307 MRLEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDLFVSNALINMYAKFGN 366

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A   F ++   ++ +WN ++ A+ +   P      + KM+  G +P+ L+   +   
Sbjct: 367 LEDARKAFQQMFITDVVSWNSIIAAYEQNDDPVTAHGFFVKMQLNGFQPDLLTLVSLASI 426

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
            +        + +H  +++ GW+  ++ + NA+VD Y+  G L  A K F+ I V DVIS
Sbjct: 427 VAQSRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVIS 486

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           WN++++ YA   L  +A+E++  M+ C++  P+  ++V  L   +  G +  G +IHG V
Sbjct: 487 WNTLITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRV 546

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K    H  V V + L D+YGKC  +  ++++F   P  S    N++++     G+ +  
Sbjct: 547 IKTNL-HLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESSVTWNAIISCHGIHGHAEKT 605

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC--RLLHCCAIKSGFESNIAVSCS 457
           +++FG M+DEG+  D VT  + L A S S     G    RL+    IK   +      C 
Sbjct: 606 LKLFGEMLDEGVKPDHVTFVSLLSACSHSGFVEEGKWCFRLMQEYGIKPSLKH---YGC- 661

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDML 506
           ++D   R G++E+++   + +P  P+   + +++     +G   +G+ A D L
Sbjct: 662 MVDLLGRAGYLEMAYGFIKDMPLQPDASIWGALLGACRIHGNIELGKFASDRL 714



 Score =  161 bits (408), Expect = 8e-37,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 240/474 (50%), Gaps = 14/474 (2%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H  ++  G   +++I + LV+LY  +G    +   FD++P++++ TWN M+ A+     
Sbjct: 138 LHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVHNGH 197

Query: 192 PDEVLR-MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             E +   Y  +    + P+  +F  +++ C  G L+D G+++H    KLG+   N+FVA
Sbjct: 198 FHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC--GTLVD-GRRIHCWAFKLGF-QWNVFVA 253

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +L+  YS  G    A+  FD +P  D+ SWN+++S          AL++   M+L   +
Sbjct: 254 ASLIHMYSRFGFTGIARSLFDDMPFRDMGSWNAMISGLIQNGNAAQALDVLDEMRLEGIK 313

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
            +  + V  L    + G++     IH YV K G +   + V +AL +MY K   +E +  
Sbjct: 314 MNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEF-DLFVSNALINMYAKFGNLEDARK 372

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI-GLDEVTLSTTLKALSVSA 429
            F+      +   NS++ +   +    D V   GF V   + G     L+    A  V+ 
Sbjct: 373 AFQQMFITDVVSWNSIIAAYEQN---DDPVTAHGFFVKMQLNGFQPDLLTLVSLASIVAQ 429

Query: 430 SANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           S +  + R +H   ++ G+   ++ +  +++D Y++ G ++ +H+VFE I   +V+ + +
Sbjct: 430 SRDCKNSRSVHGFIMRRGWLMEDVVIGNAVVDMYAKLGLLDSAHKVFEIILVKDVISWNT 489

Query: 489 IMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           ++ GY++NG+  EA+++ ++M + + +IP++ T++ +L    H G +++G  +   +   
Sbjct: 490 LITGYAQNGLASEAIEVYKMMEECKEIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKT 549

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
             +  D    +C+ID+ G+ G L  A  L  Q P     + W++++    +HG+
Sbjct: 550 -NLHLDVFVATCLIDVYGKCGRLVDAMSLFYQVPQESS-VTWNAIISCHGIHGH 601



 Score = 72.8 bits (177), Expect = 6e-10,   Method: Compositional matrix adjust.
 Identities = 51/183 (27%), Positives = 86/183 (46%), Gaps = 2/183 (1%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           +++P   T  ++ P    +  L   + +     + N  L+++ +   ID + K G L  A
Sbjct: 515 EIIPNQGTWVSILPAYAHVGALQQGMRIHGRVIKTNLHLDVFVATCLIDVYGKCGRLVDA 574

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
             LF ++P    VT+N +IS  G   H ++ L L+ EM+  G+K    TF S+LS CS++
Sbjct: 575 MSLFYQVPQESSVTWNAIISCHGIHGHAEKTLKLFGEMLDEGVKPDHVTFVSLLSACSHS 634

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLM 182
           GF  EG      +   G   +L     +VDL  R G    A     ++P + + + W  +
Sbjct: 635 GFVEEGKWCFRLMQEYGIKPSLKHYGCMVDLLGRAGYLEMAYGFIKDMPLQPDASIWGAL 694

Query: 183 LRA 185
           L A
Sbjct: 695 LGA 697



 Score = 53.1 bits (126), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 51/223 (22%), Positives = 96/223 (43%), Gaps = 9/223 (4%)

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + LH   + +G   +I +S  L++ Y+  G + LS   F++IP  +V  + S+++ Y  
Sbjct: 135 AKCLHALLVVAGKVQSIFISTRLVNLYANLGDVSLSRCTFDQIPQKDVYTWNSMISAYVH 194

Query: 496 NGMGREALD-MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
           NG   EA+    ++++   + PD  TF  VL  C   G + +G+ + +      G   + 
Sbjct: 195 NGHFHEAIGCFYQLLLVSEIRPDFYTFPPVLKAC---GTLVDGRRI-HCWAFKLGFQWNV 250

Query: 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
              + +I M  R G    A  L    P   D   W++++     +GN      V +  M 
Sbjct: 251 FVAASLIHMYSRFGFTGIARSLFDDMP-FRDMGSWNAMISGLIQNGNAAQALDVLD-EMR 308

Query: 615 LEPV--DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           LE +  +F     +     ++G+   +M I    +   L  D+
Sbjct: 309 LEGIKMNFVTVVSILPVCPQLGDISTAMLIHLYVIKHGLEFDL 351


>gi|255585273|ref|XP_002533336.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526827|gb|EEF29045.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 708

 Score =  322 bits (826), Expect = 3e-85,   Method: Compositional matrix adjust.
 Identities = 211/648 (32%), Positives = 337/648 (52%), Gaps = 28/648 (4%)

Query: 34  SYCQP---NPQLNIYSSNRTIDDFVK--SGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           ++CQ        +IY++N  +  + +  SG L  A  LFDEM  RD VT+N +ISG    
Sbjct: 21  THCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVNS 80

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
                A  LY  M S G+   A TF S+L   + A     G Q+H  ++ +G+  ++Y G
Sbjct: 81  GSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQVHSLIVKMGYEEHVYAG 140

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           S L+D+Y +      A  +F  +P RN  +WN ++  F      D    +   M+ EGV 
Sbjct: 141 SALLDMYAKCERVRDAFMVFKCIPRRNSVSWNALIAGFVLEGDHDTAFWLLRCMEEEGVR 200

Query: 209 PNGLSFCYMVRGCSIGMLLDEGK------QLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
            +  +F  ++       LLDE K      QLH  +IK G V  +  V NA +  YS CGS
Sbjct: 201 LDDGTFSPLL------TLLDEKKFYKLTMQLHCKIIKHG-VQFDNTVCNATITSYSQCGS 253

Query: 263 LIEAKKSFD-FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
           L +A++ FD  +   D+++WNS+++ +  +D    A +LF  MQ     P I ++   ++
Sbjct: 254 LEDAERVFDGAVGSRDLVTWNSMLAAFLAHDRKETAFKLFLDMQQFGFEPDIYTYTTIIS 313

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY--GKCNVIESSVAVFESAPGRS 379
             S   N   GK +HG V K G +   V + +A+  MY     N +E ++ VF S   + 
Sbjct: 314 ACSHKDN---GKSLHGLVIKRGLEQ-LVPICNAVIAMYLESSSNSMEDALNVFHSMESKD 369

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
               NS++T    +G+ ++A+++F  M    + +D    S  L++ S  A+  LG  + +
Sbjct: 370 RVSWNSILTGFSQTGHSENALKLFVHMRFAVVDIDHYAFSAVLRSCSDLATLQLG--QQI 427

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H   +KSGFESN  V+ SL+  YS+CG IE + + FEK    + + + SIM  Y+++G G
Sbjct: 428 HVLTVKSGFESNDFVASSLIFMYSKCGMIEDARKSFEKTAKDSSITWNSIMFAYAQHGQG 487

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
             AL +   M  + +  D +TF+  L  C+H G+V++G+ +  SM S YGI    +HY+C
Sbjct: 488 DVALGLFFQMRDKKVKMDHITFVAALTACSHIGLVEQGRYLLKSMASDYGISPRMEHYAC 547

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
            +D+ GRAG LD+A+ L++  P   D M+W +LL +CR  G+  +  +VA+ L+ELEP +
Sbjct: 548 AVDLFGRAGYLDEAKALIESMPFDPDAMVWKTLLGACRACGDIELAAQVASHLLELEPEE 607

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
              Y  +SN Y  +  ++    +      RK+ +  G S IEV N  H
Sbjct: 608 HCTYVILSNMYGHLKRWDEKACMARLMRERKVKKVPGWSWIEVKNEVH 655



 Score = 52.0 bits (123), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 47/210 (22%), Positives = 99/210 (47%), Gaps = 7/210 (3%)

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRC--GHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
           + HC  IK G  ++I  + +++  Y+RC  G +  +  +F+++   + V + ++++GY  
Sbjct: 20  ITHCQTIKLGRSADIYATNNILSRYTRCSSGGLTFACNLFDEMSHRDTVTWNTMISGYVN 79

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +G    A ++ + M   GL+PD  TF  +L G   +  +  GQ V +S+    G +    
Sbjct: 80  SGSLGSAWELYKSMKSFGLMPDAYTFGSILKGVACACRLDVGQQV-HSLIVKMGYEEHVY 138

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
             S ++DM  +   +  A  + +  P   + + W++L+    + G+      +    ME 
Sbjct: 139 AGSALLDMYAKCERVRDAFMVFKCIP-RRNSVSWNALIAGFVLEGDHDTAFWLLRC-MEE 196

Query: 616 EPV--DFAVYSQVSNFYSEIGEFEVSMQIR 643
           E V  D   +S +     E   ++++MQ+ 
Sbjct: 197 EGVRLDDGTFSPLLTLLDEKKFYKLTMQLH 226


>gi|297745590|emb|CBI40755.3| unnamed protein product [Vitis vinifera]
          Length = 789

 Score =  322 bits (825), Expect = 4e-85,   Method: Compositional matrix adjust.
 Identities = 198/668 (29%), Positives = 340/668 (50%), Gaps = 56/668 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG-------------CGKFR 89
           N+YS N  I  F  SG +  A+KLF++MP RD V++N ++SG              G   
Sbjct: 69  NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLG 128

Query: 90  HPKQALYL--YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
           + K AL L  + E    GI     T  SVL +    G      ++ CR  +     +L+ 
Sbjct: 129 YLKLALQLHGFAEKFDFGIDTCVET--SVLDMYIKCGAMDFAQKVFCRTPN----PSLFC 182

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            + ++  Y + G   +AL+LF ++PER+  +WN M+    +     E L  + +M  +G 
Sbjct: 183 WNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGF 242

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            PN +++  ++  C+    L+ G  LH+ ++++    ++++    L+D Y+ CG L  A+
Sbjct: 243 RPNSMTYASVLSACTSIYDLEWGAHLHARIVRME-PCLDVYAGCGLIDMYAKCGRLESAR 301

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
           + FD +   + +SW S++   A      +AL LF +M+         +    L       
Sbjct: 302 QVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQK 361

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           ++  G+Q+H +    G D  SV V +AL  MY KC  +  +   FE  P R +    +++
Sbjct: 362 DISIGEQLHAHTITRGLD-SSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMI 420

Query: 388 TSLLHSGNIKDAVEMF---------------------GF----------MVDEGIGLDEV 416
           T+   +G+++ A E F                     G+          M+ EG+  D +
Sbjct: 421 TAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVKTDWI 480

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T ST++ A +  A   LG+  L    A K GF SN++V+ S++  YSRCG IE + ++F 
Sbjct: 481 TFSTSISACADLAVLILGNQILAQ--AEKLGFSSNVSVANSVVTMYSRCGQIEEAQKMFS 538

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            I   N+V + ++M GY++NG GR+ +++ E M+  G +PD+++++ VL+GC+HSG V E
Sbjct: 539 SIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGFVSE 598

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           GQ  F SM   +GI    +H+ CM+D+LGRAG L++A+ L+ Q P   +  +W +LL +C
Sbjct: 599 GQYYFLSMTKDHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKPNAAIWGALLAAC 658

Query: 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           R+HGN  +       L+EL+      Y  ++N YSE G+ +    +R+    + + ++ G
Sbjct: 659 RIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGVTNVRKLMRDKGVRKNPG 718

Query: 657 HSLIEVNS 664
            S IEV++
Sbjct: 719 CSWIEVDN 726



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 229/489 (46%), Gaps = 38/489 (7%)

Query: 35  YCQ-PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           +C+ PNP L  +  N  I  + K G +  A +LF +MP RD V++N +IS   +     +
Sbjct: 172 FCRTPNPSL--FCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAE 229

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
            L  + EM + G + ++ T++SVLS C++      G  +H R++ +   L++Y G  L+D
Sbjct: 230 TLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLID 289

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A  +FD L E N  +W  ++    +    +E L ++N+M+   V  +  +
Sbjct: 290 MYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFT 349

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++  C     +  G+QLH+H I  G +D ++ VANALV  Y+ CG + +A  +F+ +
Sbjct: 350 LATVLGVCLSQKDISIGEQLHAHTITRG-LDSSVPVANALVTMYAKCGDVWKANHAFELM 408

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFR----------------MQLCRKRPSIRSFV 317
           P+ D+ISW ++++ ++    +  A E F +                MQ       ++ ++
Sbjct: 409 PIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYI 468

Query: 318 EFLNFASRTGNVYF---------------GKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           + L    +T  + F               G QI     KLGF   +V V +++  MY +C
Sbjct: 469 QMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFS-SNVSVANSVVTMYSRC 527

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             IE +  +F S   ++L   N++M     +G  +  +E+F  M++ G   D+++  + L
Sbjct: 528 GQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVL 587

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SP 481
              S S   + G    L       G          ++D   R G +E +  +  ++P  P
Sbjct: 588 SGCSHSGFVSEGQYYFLSMTK-DHGISPMSEHFVCMVDLLGRAGQLEQAKNLINQMPFKP 646

Query: 482 NVVCFTSIM 490
           N   + +++
Sbjct: 647 NAAIWGALL 655



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 109/412 (26%), Positives = 194/412 (47%), Gaps = 41/412 (9%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDS-YCQPNPQLNIYSSNRTIDDFVKSGH 59
           M +    P   T  ++   CTSI  L     L +   +  P L++Y+    ID + K G 
Sbjct: 237 MWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGR 296

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L SA+++FD +   + V++  LI G  +    ++AL L+++M    +     T ++VL V
Sbjct: 297 LESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGV 356

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR---------------------- 157
           C +    + G Q+H   ++ G   ++ + + LV +Y +                      
Sbjct: 357 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 416

Query: 158 ---------MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
                     G   +A + FD++PERN+ +WN ML  + +    +E L++Y +M  EGV+
Sbjct: 417 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 476

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            + ++F   +  C+   +L  G Q+ +   KLG+   N+ VAN++V  YS CG + EA+K
Sbjct: 477 TDWITFSTSISACADLAVLILGNQILAQAEKLGF-SSNVSVANSVVTMYSRCGQIEEAQK 535

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  I + +++SWN++++ YA        +E+F +M      P   S+V  L+  S +G 
Sbjct: 536 MFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSGCSHSGF 595

Query: 329 VYFGKQIHGYVTKLGFDHG----SVHVQSALTDMYGKCNVIESSVAVFESAP 376
           V  G+     +TK   DHG    S H    + D+ G+   +E +  +    P
Sbjct: 596 VSEGQYYFLSMTK---DHGISPMSEHF-VCMVDLLGRAGQLEQAKNLINQMP 643



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 110/492 (22%), Positives = 221/492 (44%), Gaps = 53/492 (10%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           ++H +++ +G   ++++ + L+++Y   G    A  +F  +   N+ +WN M+  F +  
Sbjct: 25  KLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFADSG 84

Query: 191 RPDEVLRMYNKM-KAEGVEPNGLSFCYMVRG---------CSIGMLLDEGKQLHSHV--- 237
           +  E  +++ KM + + V  N +   Y   G          S+G  L    QLH      
Sbjct: 85  QMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKASGSLG-YLKLALQLHGFAEKF 143

Query: 238 ----------------IKLGWVDV-----------NIFVANALVDFYSACGSLIEAKKSF 270
                           IK G +D            ++F  N+++  YS  GS+ +A + F
Sbjct: 144 DFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELF 203

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
             +P  D +SWN+++SI + +    + L  F  M     RP+  ++   L+  +   ++ 
Sbjct: 204 AKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLE 263

Query: 331 FGKQIHGYVTKLG--FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +G  +H  + ++    D   V+    L DMY KC  +ES+  VF+     +     SL+ 
Sbjct: 264 WGAHLHARIVRMEPCLD---VYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIG 320

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
            +  +G  ++A+ +F  M +  +  D+ TL+T L         ++G    LH   I  G 
Sbjct: 321 GVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIG--EQLHAHTITRGL 378

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           +S++ V+ +L+  Y++CG +  ++  FE +P  +++ +T+++  +S+ G   +A +  + 
Sbjct: 379 DSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDK 438

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M +R +I    ++  +LA     G  +EG  V+  M    G+  D   +S  I       
Sbjct: 439 MPERNVI----SWNSMLATYMQRGYWEEGLKVYIQMLR-EGVKTDWITFSTSISACADLA 493

Query: 569 ILDKAEELLQQT 580
           +L    ++L Q 
Sbjct: 494 VLILGNQILAQA 505



 Score =  122 bits (306), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 103/412 (25%), Positives = 192/412 (46%), Gaps = 46/412 (11%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            ++LH+ +I +G +  +IF+ N L++ YS CG + +A + F  I   +V SWN+++S +A
Sbjct: 23  ARKLHAQLIFMG-LKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMFPNVYSWNTMISGFA 81

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVE----------FLNFASRTGNVYFGKQIHGYV 339
           D   + +A +LF +M   R   S  S +            +  +   G +    Q+HG+ 
Sbjct: 82  DSGQMREAEKLFEKMPE-RDSVSWNSMMSGYFHNGELEATIKASGSLGYLKLALQLHGFA 140

Query: 340 TKLGFDHG-SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            K  FD G    V++++ DMY KC  ++ +  VF   P  SL C NS++      G++K 
Sbjct: 141 EK--FDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKK 198

Query: 399 AVEMFGFMVDEGI-------------GLDEVTLSTTLKAL-------SVSASANLGSCRL 438
           A+E+F  M +                G    TL+T L+         S++ ++ L +C  
Sbjct: 199 ALELFAKMPERDTVSWNTMISILSQHGFGAETLNTFLEMWNQGFRPNSMTYASVLSACTS 258

Query: 439 ---------LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
                    LH   ++     ++   C L+D Y++CG +E + QVF+ +   N V +TS+
Sbjct: 259 IYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSL 318

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + G ++ G   EAL +   M +  +  D+ T   VL  C     +  G+ + ++     G
Sbjct: 319 IGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGVCLSQKDISIGEQL-HAHTITRG 377

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +D+     + ++ M  + G + KA    +  P   D + W++++ +    G+
Sbjct: 378 LDSSVPVANALVTMYAKCGDVWKANHAFELMP-IRDIISWTAMITAFSQAGD 428



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 51/213 (23%), Positives = 109/213 (51%), Gaps = 16/213 (7%)

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
           + F E +   +   ++   +++H  +  +G    S+ +Q+ L +MY  C +I  +  VF 
Sbjct: 5   QKFYESMKECASLRSIPIARKLHAQLIFMGLK-SSIFLQNHLLNMYSNCGLISDAYRVFG 63

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL-------- 425
                ++   N++++    SG +++A ++F  M +     D V+ ++ +           
Sbjct: 64  GIMFPNVYSWNTMISGFADSGQMREAEKLFEKMPER----DSVSWNSMMSGYFHNGELEA 119

Query: 426 SVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           ++ AS +LG  +L   LH  A K  F  +  V  S++D Y +CG ++ + +VF + P+P+
Sbjct: 120 TIKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAMDFAQKVFCRTPNPS 179

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
           + C+ S++ GYS+ G  ++AL++   M +R  +
Sbjct: 180 LFCWNSMIYGYSKYGSVKKALELFAKMPERDTV 212


>gi|224094835|ref|XP_002310258.1| predicted protein [Populus trichocarpa]
 gi|222853161|gb|EEE90708.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 180/615 (29%), Positives = 334/615 (54%), Gaps = 5/615 (0%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGI 106
           N  + + VK+GHLN+A++LFD+M  RD +++  +ISG     +  +AL L+ +M V  G+
Sbjct: 5   NLVLKNLVKTGHLNNARQLFDKMLQRDEISWTTIISGYVNGMNTTEALSLFSKMWVEPGL 64

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                  S  L  C      + G  +H   +   F  ++++GS LVD+YM++G       
Sbjct: 65  HMDPFILSLALKACGLNMSVSFGESLHGYSVKTDFVNSVFVGSALVDMYMKIGKVDEGCI 124

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F E+P RN+ +W  ++          E L  ++ M  + V  +  +F   ++ C+    
Sbjct: 125 VFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMWIQKVGCDTYTFSSALKACADSGA 184

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L+ G+++H   +K G+  V+ FVAN L   Y+ CG L    + F+ +   DV+SW +I+ 
Sbjct: 185 LNYGREIHCQTLKKGFTAVS-FVANTLATMYNKCGKLDYGLRLFESMTQRDVVSWTTIIM 243

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
                    +A++ F RM+     P+  +F   ++  +  G + +G+Q+H +V + G   
Sbjct: 244 SNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCATLGRIEWGEQLHAHVIRRGLVD 303

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            S+ V +++  MY KC  ++ +  VF+    R +   +++++     G  ++A +   +M
Sbjct: 304 -SLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWSTMISGYAQGGCGEEAFDYLSWM 362

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             EG   +E   ++ L      A    G  + LH   +  G E N  V  +L++ YS+CG
Sbjct: 363 RREGPRPNEFAFASVLSVCGNMAILEQG--KQLHAHVLCVGLEQNTMVQSALINMYSKCG 420

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            I+ + ++F++    N+V +T+++NGY+ +G  +EA+D+ + + + GL PD VTF+ VLA
Sbjct: 421 SIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDLFKKLPKVGLRPDSVTFIAVLA 480

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H+G+V  G   FNS+  V+ I   + HY CMID+L RAG L+ AE ++Q  P   D 
Sbjct: 481 ACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLCRAGRLNDAESMIQSMPFQRDD 540

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
           ++WS+LLR+CR+HG+   G+R A  +++L+P     +  ++N Y+  G+++ + ++R+  
Sbjct: 541 VVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHITLANMYAAKGKWKEAAEVRKMM 600

Query: 647 LARKLTRDIGHSLIE 661
            ++ + ++ G S I+
Sbjct: 601 KSKGVVKEPGWSWIK 615



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 254/509 (49%), Gaps = 36/509 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  +D ++K G ++    +F EMP R++V++  +I+G  +  + K+AL  + +M 
Sbjct: 102 SVFVGSALVDMYMKIGKVDEGCIVFKEMPLRNVVSWTAIIAGLVRAGYNKEALAYFSDMW 161

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +     TFSS L  C+++G    G +IHC+ L  GF    ++ + L  +Y + G   
Sbjct: 162 IQKVGCDTYTFSSALKACADSGALNYGREIHCQTLKKGFTAVSFVANTLATMYNKCGKLD 221

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
             L LF+ + +R++ +W  ++ +  ++ + +  ++ + +M+   V PN  +F  ++ GC+
Sbjct: 222 YGLRLFESMTQRDVVSWTTIIMSNVQIGQEENAVKAFRRMRETDVSPNEFTFAAVISGCA 281

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               ++ G+QLH+HVI+ G VD ++ VAN+++  YS C  L  A   F  +   D+ISW+
Sbjct: 282 TLGRIEWGEQLHAHVIRRGLVD-SLSVANSIMAMYSKCWQLDLASTVFQGLSRRDIISWS 340

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S YA      +A +    M+    RP+  +F   L+       +  GKQ+H +V  +
Sbjct: 341 TMISGYAQGGCGEEAFDYLSWMRREGPRPNEFAFASVLSVCGNMAILEQGKQLHAHVLCV 400

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G +  ++ VQSAL +MY KC  I+ +  +F+ A   ++    +++      G  ++A+++
Sbjct: 401 GLEQNTM-VQSALINMYSKCGSIKEASKIFDEAEYNNIVSWTAMINGYAEHGYSQEAIDL 459

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLG-----SCRLLH--C-------CAI---- 444
           F  +   G+  D VT    L A S +   +LG     S   +H  C       C I    
Sbjct: 460 FKKLPKVGLRPDSVTFIAVLAACSHAGLVDLGFHYFNSLSKVHQICPSKDHYGCMIDLLC 519

Query: 445 KSG-------------FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PN-VVCFTS 488
           ++G             F+ +  V  +L+ A    G ++   +  EKI    PN  V   +
Sbjct: 520 RAGRLNDAESMIQSMPFQRDDVVWSTLLRACRIHGDVDCGKRAAEKILQLDPNCAVTHIT 579

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           + N Y+  G  +EA ++ ++M  +G++ +
Sbjct: 580 LANMYAAKGKWKEAAEVRKMMKSKGVVKE 608


>gi|356570738|ref|XP_003553542.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Glycine max]
          Length = 777

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 201/667 (30%), Positives = 350/667 (52%), Gaps = 18/667 (2%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLS-----SSLLLDSYCQPNPQLNIYSSNRTIDDFVKS 57
           S +L P   T   L   CT++  L         +L S CQP+  L     N  ++ + K 
Sbjct: 75  SIQLEPS--TYVNLILACTNVRSLKYGKRIHDHILKSNCQPDLVL----QNHILNMYGKC 128

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L  A+K FD M  R +V++ ++ISG  +      A+ +Y +M+  G      TF S++
Sbjct: 129 GSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRSGYFPDQLTFGSII 188

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C  AG    G Q+H  V+  G+  +L   + L+ +Y + G    A D+F  +  ++L 
Sbjct: 189 KACCIAGDIDLGGQLHGHVIKSGYDHHLIAQNALISMYTKFGQIAHASDVFTMISTKDLI 248

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
           +W  M+  F +L    E L ++  M  +GV +PN   F  +   C   +  + G+Q+   
Sbjct: 249 SWASMITGFTQLGYEIEALYLFRDMFRQGVYQPNEFIFGSVFSACRSLLKPEFGRQIQGM 308

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
             K G +  N+F   +L D Y+  G L  AK++F  I   D++SWN+I++  A+ D + +
Sbjct: 309 CAKFG-LGRNVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVSWNAIIAALANSD-VNE 366

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A+  F +M      P   +F+  L        +  G QIH Y+ K+G D  +    S LT
Sbjct: 367 AIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQGMQIHSYIIKMGLDKVAAVCNSLLT 426

Query: 357 DMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            MY KC+ +  +  VF+  +   +L   N+++++        +A  +F  M+      D 
Sbjct: 427 -MYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGEAFRLFKLMLFSENKPDN 485

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           +T++T L   +   S  +G+   +HC ++KSG   +++VS  L+D Y++CG ++ +  VF
Sbjct: 486 ITITTILGTCAELVSLEVGN--QVHCFSVKSGLVVDVSVSNRLIDMYAKCGLLKHARYVF 543

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           +   +P++V ++S++ GY++ G+G+EAL++  +M   G+ P++VT+L VL+ C+H G+V+
Sbjct: 544 DSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSACSHIGLVE 603

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG  ++N+M+   GI   R+H SCM+D+L RAG L +AE  +++T    D  MW +LL S
Sbjct: 604 EGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDITMWKTLLAS 663

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           C+ HGN  I  R A  +++L+P + A    +SN ++  G ++   ++R       + +  
Sbjct: 664 CKTHGNVDIAERAAENILKLDPSNSAALVLLSNIHASAGNWKEVARLRNLMKQMGVQKVP 723

Query: 656 GHSLIEV 662
           G S IEV
Sbjct: 724 GQSWIEV 730



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 136/513 (26%), Positives = 247/513 (48%), Gaps = 16/513 (3%)

Query: 87  KFRHPKQALYLYD-EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
           K +H ++AL  ++  + +  I+   ST+ +++  C+N      G +IH  +L      +L
Sbjct: 56  KQQHYREALDTFNFHLKNSSIQLEPSTYVNLILACTNVRSLKYGKRIHDHILKSNCQPDL 115

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
            + + ++++Y + G    A   FD +  R++ +W +M+  + +  + ++ + MY +M   
Sbjct: 116 VLQNHILNMYGKCGSLKDARKAFDTMQLRSVVSWTIMISGYSQNGQENDAIIMYIQMLRS 175

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G  P+ L+F  +++ C I   +D G QLH HVIK G+ D ++   NAL+  Y+  G +  
Sbjct: 176 GYFPDQLTFGSIIKACCIAGDIDLGGQLHGHVIKSGY-DHHLIAQNALISMYTKFGQIAH 234

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF---FRMQLCRKRPSIRSFVEFLNF 322
           A   F  I   D+ISW S+++ +       +AL LF   FR  +   +P+   F    + 
Sbjct: 235 ASDVFTMISTKDLISWASMITGFTQLGYEIEALYLFRDMFRQGV--YQPNEFIFGSVFSA 292

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
                   FG+QI G   K G    +V    +L DMY K   + S+   F       L  
Sbjct: 293 CRSLLKPEFGRQIQGMCAKFGLGR-NVFAGCSLCDMYAKFGFLPSAKRAFYQIESPDLVS 351

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            N+++ +L +S ++ +A+  F  M+  G+  D++T    L A     + N G    +H  
Sbjct: 352 WNAIIAALANS-DVNEAIYFFCQMIHMGLMPDDITFLNLLCACGSPMTLNQG--MQIHSY 408

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGRE 501
            IK G +   AV  SL+  Y++C ++  +  VF+ I  + N+V + +I++  S++    E
Sbjct: 409 IIKMGLDKVAAVCNSLLTMYTKCSNLHDAFNVFKDISENGNLVSWNAILSACSQHKQPGE 468

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCM 560
           A  + ++M+     PD +T   +L  C     ++ G  V   S+KS  G+  D    + +
Sbjct: 469 AFRLFKLMLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKS--GLVVDVSVSNRL 526

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           IDM  + G+L  A  +   T    D + WSSL+
Sbjct: 527 IDMYAKCGLLKHARYVFDSTQ-NPDIVSWSSLI 558



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/186 (28%), Positives = 91/186 (48%), Gaps = 3/186 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           ML ++  P   TITT+  TC  +V L     +  +  +    +++  SNR ID + K G 
Sbjct: 476 MLFSENKPDNITITTILGTCAELVSLEVGNQVHCFSVKSGLVVDVSVSNRLIDMYAKCGL 535

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+ +FD     D+V+++ LI G  +F   ++AL L+  M + G++ +  T+  VLS 
Sbjct: 536 LKHARYVFDSTQNPDIVSWSSLIVGYAQFGLGQEALNLFRMMRNLGVQPNEVTYLGVLSA 595

Query: 120 CSNAGFYTEGIQIHCRV-LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
           CS+ G   EG  ++  + + LG        S +VDL  R G    A +   +   + ++ 
Sbjct: 596 CSHIGLVEEGWHLYNTMEIELGIPPTREHVSCMVDLLARAGCLYEAENFIKKTGFDPDIT 655

Query: 178 TWNLML 183
            W  +L
Sbjct: 656 MWKTLL 661


>gi|224132926|ref|XP_002321443.1| predicted protein [Populus trichocarpa]
 gi|222868439|gb|EEF05570.1| predicted protein [Populus trichocarpa]
          Length = 723

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 189/602 (31%), Positives = 340/602 (56%), Gaps = 13/602 (2%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           RD+V+++ LIS         +A+  + +M+  G   +   F+ V   CSN    + G  I
Sbjct: 5   RDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKII 64

Query: 133 HCRVLSLG-FGLNLYIGSPLVDLYMR-MGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
              +L  G F  ++ +G  L+D++++  G    A  +FD +P+RN+ TW LM+  F +L 
Sbjct: 65  FGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLG 124

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + + ++  M   G  P+  +   +V  C+   LL  G+Q H  V+K G +D+++ V 
Sbjct: 125 FSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSG-LDLDVCVG 183

Query: 251 NALVDFYSAC---GSLIEAKKSFDFIPVDDVISWNSIVSIYADYD-LIFDALELFFRMQL 306
            +LVD Y+ C   GS+ +A+K FD +PV +V+SW +I++ Y        +A+ELF  M  
Sbjct: 184 CSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQ 243

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH-VQSALTDMYGKCNVI 365
            + +P+  +F   L   +   +++ G+Q++  V K+     S++ V ++L  MY +C  +
Sbjct: 244 GQVKPNHFTFSSVLKACANLSDIWLGEQVYALVVKMRL--ASINCVGNSLISMYSRCGNM 301

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           E++   F+    ++L   N+++ +   S N ++A E+F  +   G G++  T ++ L   
Sbjct: 302 ENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSG- 360

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
             S+   +G    +H   +KSGF+SN+ +  +L+  YSRCG+IE + QVF ++   NV+ 
Sbjct: 361 -ASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVIS 419

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +TS++ G++++G    AL+    M++ G+ P++VT++ VL+ C+H G++ EG   F SMK
Sbjct: 420 WTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLISEGLKHFKSMK 479

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             +GI    +HY+C++D+LGR+G L++A EL+   P   D ++  + L +CRVHGN  +G
Sbjct: 480 VEHGIVPRMEHYACVVDLLGRSGHLEEAMELVNSMPFKADALVLRTFLGACRVHGNMDLG 539

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NS 664
           +  A +++E +P D A Y  +SN ++  G++E   +IR+    R LT++ G S IEV N 
Sbjct: 540 KHAAEMILEQDPHDPAAYILLSNLHASAGQWEEVAEIRKKMKERNLTKEAGCSWIEVENK 599

Query: 665 CH 666
            H
Sbjct: 600 VH 601



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 130/436 (29%), Positives = 227/436 (52%), Gaps = 12/436 (2%)

Query: 51  IDDFVK-SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
           ID FVK +G L SA K+FD MP R++VT+ L+I+   +    + A+ L+ +MV  G    
Sbjct: 85  IDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQLGFSRDAVDLFLDMVLSGYVPD 144

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM---GPSVRALD 166
             T S V+S C+  G  + G Q HC V+  G  L++ +G  LVD+Y +    G    A  
Sbjct: 145 RFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDLDVCVGCSLVDMYAKCVADGSVDDARK 204

Query: 167 LFDELPERNLATWNLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           +FD +P  N+ +W  ++  + +    D E + ++ +M    V+PN  +F  +++ C+   
Sbjct: 205 VFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMVQGQVKPNHFTFSSVLKACANLS 264

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  G+Q+++ V+K+    +N  V N+L+  YS CG++  A+K+FD +   +++S+N+IV
Sbjct: 265 DIWLGEQVYALVVKMRLASINC-VGNSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIV 323

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           + YA      +A ELF  ++      +  +F   L+ AS  G +  G+QIH  + K GF 
Sbjct: 324 NAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFK 383

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
             ++H+ +AL  MY +C  IE++  VF      ++    S++T     G    A+E F  
Sbjct: 384 -SNLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHK 442

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNIAVSCSLMDAYS 463
           M++ G+  +EVT    +  LS  +   L S  L H  ++K   G    +     ++D   
Sbjct: 443 MLEAGVSPNEVTY---IAVLSACSHVGLISEGLKHFKSMKVEHGIVPRMEHYACVVDLLG 499

Query: 464 RCGHIELSHQVFEKIP 479
           R GH+E + ++   +P
Sbjct: 500 RSGHLEEAMELVNSMP 515



 Score =  149 bits (375), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 111/434 (25%), Positives = 211/434 (48%), Gaps = 12/434 (2%)

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +R+L +W+ ++  +    +  E +  +  M   G  PN   F  + R CS    +  GK 
Sbjct: 4   KRDLVSWSALISCYANNEKAFEAISAFFDMLECGFYPNEYCFTGVFRACSNKENISLGKI 63

Query: 233 LHSHVIKLGWVDVNIFVANALVD-FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           +   ++K G+ + ++ V  AL+D F    G L  A K FD +P  +V++W  +++ +   
Sbjct: 64  IFGFLLKTGYFESDVCVGCALIDMFVKGNGDLESAYKVFDRMPDRNVVTWTLMITRFQQL 123

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               DA++LF  M L    P   +    ++  +  G +  G+Q H  V K G D   V V
Sbjct: 124 GFSRDAVDLFLDMVLSGYVPDRFTLSGVVSACAEMGLLSLGRQFHCLVMKSGLDL-DVCV 182

Query: 352 QSALTDMYGKC---NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI-KDAVEMFGFMV 407
             +L DMY KC     ++ +  VF+  P  ++    +++T  + SG   ++A+E+F  MV
Sbjct: 183 GCSLVDMYAKCVADGSVDDARKVFDRMPVHNVMSWTAIITGYVQSGGCDREAIELFLEMV 242

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
              +  +  T S+ LKA +  +   LG    ++   +K    S   V  SL+  YSRCG+
Sbjct: 243 QGQVKPNHFTFSSVLKACANLSDIWLG--EQVYALVVKMRLASINCVGNSLISMYSRCGN 300

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +E + + F+ +   N+V + +I+N Y+++    EA ++   +   G   +  TF  +L+G
Sbjct: 301 MENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTGVNAFTFASLLSG 360

Query: 528 CNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            +  G + +G+ + +  +KS  G  ++    + +I M  R G ++ A ++  +  G G+ 
Sbjct: 361 ASSIGAIGKGEQIHSRILKS--GFKSNLHICNALISMYSRCGNIEAAFQVFNEM-GDGNV 417

Query: 587 MMWSSLLRSCRVHG 600
           + W+S++     HG
Sbjct: 418 ISWTSMITGFAKHG 431



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 69/228 (30%), Positives = 121/228 (53%), Gaps = 2/228 (0%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + + G++ +A+K FD +  +++V+YN +++   K  + ++A  L++E+   G  
Sbjct: 289 NSLISMYSRCGNMENARKAFDVLFEKNLVSYNTIVNAYAKSLNSEEAFELFNEIEGAGTG 348

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +A TF+S+LS  S+ G   +G QIH R+L  GF  NL+I + L+ +Y R G    A  +
Sbjct: 349 VNAFTFASLLSGASSIGAIGKGEQIHSRILKSGFKSNLHICNALISMYSRCGNIEAAFQV 408

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+E+ + N+ +W  M+  F +       L  ++KM   GV PN +++  ++  CS   L+
Sbjct: 409 FNEMGDGNVISWTSMITGFAKHGFATRALETFHKMLEAGVSPNEVTYIAVLSACSHVGLI 468

Query: 228 DEG-KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
            EG K   S  ++ G V      A  +VD     G L EA +  + +P
Sbjct: 469 SEGLKHFKSMKVEHGIVPRMEHYA-CVVDLLGRSGHLEEAMELVNSMP 515



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 39/146 (26%), Positives = 81/146 (55%), Gaps = 6/146 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  N  I  + + G++ +A ++F+EM   +++++  +I+G  K     +AL  + +M+
Sbjct: 385 NLHICNALISMYSRCGNIEAAFQVFNEMGDGNVISWTSMITGFAKHGFATRALETFHKML 444

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGP 160
             G+  +  T+ +VLS CS+ G  +EG++ H + + +  G+   +   + +VDL  R G 
Sbjct: 445 EAGVSPNEVTYIAVLSACSHVGLISEGLK-HFKSMKVEHGIVPRMEHYACVVDLLGRSGH 503

Query: 161 SVRALDLFDELPERNLATWNLMLRAF 186
              A++L + +P +  A   L+LR F
Sbjct: 504 LEEAMELVNSMPFKADA---LVLRTF 526


>gi|449514605|ref|XP_004164425.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49170, chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  322 bits (824), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 198/671 (29%), Positives = 359/671 (53%), Gaps = 19/671 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P ++T +     C         +L+ +   Q + QL+  + N  I  + K G    A  +
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSI 123

Query: 67  FDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           F  M  +RD+++++ ++S         +AL  + +M+ +G   +   F++    CS A F
Sbjct: 124 FRLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEF 183

Query: 126 YTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMR-MGPSVRALDLFDELPERNLATWNLML 183
            + G  I   V+  G+   ++ +G  L+D++++  G  V A  +F+++PERN  TW LM+
Sbjct: 184 VSVGDSIFGFVIKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 243

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
               +     E + ++  M   G EP+  +   ++  C+   LL  G+QLHS  I+ G +
Sbjct: 244 TRLMQFGYAGEAIDLFLDMIFSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHG-L 302

Query: 244 DVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVISWNSIVSIYAD---YDLIFDA 297
            ++  V   L++ Y+ C   GS+  A+K FD I   +V SW ++++ Y     YD   +A
Sbjct: 303 TLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDE--EA 360

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH-VQSALT 356
           L+LF  M L    P+  +F   L   +    +  G+Q+  +  KLGF   SV+ V ++L 
Sbjct: 361 LDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFS--SVNCVANSLI 418

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY +   I+ +   F+    ++L   N+++ +   + N ++A+E+F  + D+G+G    
Sbjct: 419 SMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAF 478

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T ++ L     ++   +G    +H   IKSG + N +V  +L+  YSRCG+IE + QVFE
Sbjct: 479 TFASLLSG--AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFE 536

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            +   NV+ +TSI+ G++++G   +AL++   M++ G+ P++VT++ VL+ C+H G+V E
Sbjct: 537 DMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNEVTYIAVLSACSHVGLVNE 596

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G   F SM + +G+    +HY+C++D+LGR+G L +A + +   P   D ++W + L +C
Sbjct: 597 GWKHFKSMYTEHGVIPRMEHYACIVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           RVHGN  +G+  A +++E EP D A Y  +SN Y+ I +++    IR+    + L ++ G
Sbjct: 657 RVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASISKWDEVSNIRKAMKEKXLIKEAG 716

Query: 657 HSLIEV-NSCH 666
            S +EV N  H
Sbjct: 717 CSWVEVENKVH 727


>gi|297820538|ref|XP_002878152.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323990|gb|EFH54411.1| hypothetical protein ARALYDRAFT_486188 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 886

 Score =  322 bits (824), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 206/633 (32%), Positives = 335/633 (52%), Gaps = 24/633 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ++ + K G   +  K+FD +  R+ V++N LIS    F   + AL  +  M+   +
Sbjct: 132 ANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDV 191

Query: 107 KESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + S+ T  SV   CSN     EG+    Q+H   L  G  LN +I + LV +Y +MG   
Sbjct: 192 EPSSFTLVSVALACSNFPM-PEGLLMGKQVHAYGLRKG-ELNSFIINTLVAMYGKMGKLA 249

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  L      R+L TWN +L + C+  +  E L    +M  EGVEP+G +   ++  CS
Sbjct: 250 SSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACS 309

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              +L  GK+LH++ +K G +D N FV +ALVD Y  C  ++   + FD +    +  WN
Sbjct: 310 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWN 369

Query: 283 SIVSIYADYDLIFDALELFFRMQ----LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ++++ YA  +   +AL LF  M+    L     ++   V       R+G     + IHG+
Sbjct: 370 AMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPA---CVRSGAFSKKEAIHGF 426

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V K G D     VQ+AL DMY +   I+ +  +F     R L   N+++T  + S   +D
Sbjct: 427 VVKRGLDRDRF-VQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHED 485

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC---------RLLHCCAIKSGFE 449
           A+ M   M        E     +LK  S++    L SC         + +H  AIK+   
Sbjct: 486 ALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNNLA 545

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           +++AV  +L+D Y++CG +++S +VF++IP  NV+ +  I+  Y  +G  ++A+DML +M
Sbjct: 546 TDVAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAIDMLRMM 605

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
           + +G+ P++VTF+ V A C+HSGMV EG  +F +MK  YG++    HY+C++D+LGRAG 
Sbjct: 606 MVQGVKPNEVTFISVFAACSHSGMVNEGLKIFYNMKKDYGVEPSSDHYACVVDLLGRAGR 665

Query: 570 LDKAEELLQQTPGGGD-CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
           + +A +L+   P   D    WSSLL +CR+H N  IG   A  L++LEP   + Y  ++N
Sbjct: 666 VKEAYQLINLIPRNFDKAGAWSSLLGACRIHNNLEIGEIAAQNLIQLEPNVASHYVLLAN 725

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            YS  G +  + ++R    A+ + ++ G S IE
Sbjct: 726 IYSSAGLWYKATEVRRNMKAQGVRKEPGCSWIE 758



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/498 (27%), Positives = 238/498 (47%), Gaps = 25/498 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLL----DSYCQPNPQLNIYSSNRTIDDFVK 56
           ML   + P   T+ ++A  C++  P+   LL+     +Y     +LN +  N  +  + K
Sbjct: 186 MLDEDVEPSSFTLVSVALACSNF-PMPEGLLMGKQVHAYGLRKGELNSFIINTLVAMYGK 244

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
            G L S+K L      RD+VT+N ++S   +     +AL    EMV  G++    T SSV
Sbjct: 245 MGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSV 304

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           L  CS+      G ++H   L  G    N ++GS LVD+Y      +    +FD + +R 
Sbjct: 305 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRK 364

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +  WN M+  + +    +E L ++ +M ++ G+  N  +   +V  C       + + +H
Sbjct: 365 IGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVRSGAFSKKEAIH 424

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
             V+K G +D + FV NAL+D YS  G +  AK+ F  +   D+++WN+I++ Y   +  
Sbjct: 425 GFVVKRG-LDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERH 483

Query: 295 FDALELFFRMQLCRKRPSIR-----------SFVEFLNFASRTGNVYFGKQIHGYVTK-- 341
            DAL +  +MQ+  ++ S R           + +  L   +    +  GK+IH Y  K  
Sbjct: 484 EDALLMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 543

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           L  D   V V SAL DMY KC  ++ S  VF+  P R++   N ++ +    GN +DA++
Sbjct: 544 LATD---VAVGSALVDMYAKCGCLQMSRKVFDQIPIRNVITWNVIVMAYGMHGNSQDAID 600

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           M   M+ +G+  +EVT  +   A S S   N G  ++ +      G E +      ++D 
Sbjct: 601 MLRMMMVQGVKPNEVTFISVFAACSHSGMVNEG-LKIFYNMKKDYGVEPSSDHYACVVDL 659

Query: 462 YSRCGHIELSHQVFEKIP 479
             R G ++ ++Q+   IP
Sbjct: 660 LGRAGRVKEAYQLINLIP 677



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 137/530 (25%), Positives = 251/530 (47%), Gaps = 30/530 (5%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSP 150
           ++A+  Y +M+  GIK     F ++L   ++      G QIH  V   G+G++ + + + 
Sbjct: 75  REAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVYKFGYGVDSVTVANT 134

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV+LY + G       +FD + ERN  +WN ++ + C   + +  L  +  M  E VEP+
Sbjct: 135 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDEDVEPS 194

Query: 211 GLSFCYMVRGCS-----IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
             +   +   CS      G+L+  GKQ+H++ ++ G  ++N F+ N LV  Y   G L  
Sbjct: 195 SFTLVSVALACSNFPMPEGLLM--GKQVHAYGLRKG--ELNSFIINTLVAMYGKMGKLAS 250

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           +K         D+++WN+++S     +   +ALE    M L    P   +    L   S 
Sbjct: 251 SKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVEPDGFTISSVLPACSH 310

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  GK++H Y  K G    +  V SAL DMY  C  + S   VF+    R +   N+
Sbjct: 311 LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGCRVFDGMFDRKIGLWNA 370

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL--SVSASANLGSCRLLHCCA 443
           ++T    +   ++A+ +F   ++E  GL  +  STT+  +  +   S        +H   
Sbjct: 371 MITGYAQNEYDEEALLLF-IEMEESAGL--LANSTTMAGVVPACVRSGAFSKKEAIHGFV 427

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           +K G + +  V  +LMD YSR G I+++ ++F K+   ++V + +I+ GY  +    +AL
Sbjct: 428 VKRGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKMEDRDLVTWNTIITGYVFSERHEDAL 487

Query: 504 DMLEVM--IQR---------GLIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSMKSVYGID 551
            ML  M  ++R          L P+ +T + +L  C   S + K  ++   ++K+   + 
Sbjct: 488 LMLHKMQILERKASERASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLA 545

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            D    S ++DM  + G L  + ++  Q P   + + W+ ++ +  +HGN
Sbjct: 546 TDVAVGSALVDMYAKCGCLQMSRKVFDQIP-IRNVITWNVIVMAYGMHGN 594



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 119/423 (28%), Positives = 203/423 (47%), Gaps = 17/423 (4%)

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  +LR+    +   E +  Y  M   G++P+  +F  +++  +    +D GKQ+H+HV 
Sbjct: 61  WIDLLRSKVRSNLLREAVLTYIDMIVLGIKPDNFAFPALLKAVADLQDMDLGKQIHAHVY 120

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K G+   ++ VAN LV+ Y  CG      K FD I   + +SWNS++S    ++    AL
Sbjct: 121 KFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMAL 180

Query: 299 ELFFRMQLCRKRPSIRSFVEFL----NFASRTGNVYFGKQIHGYVTKLGFDHGSVH--VQ 352
           E F  M      PS  + V       NF    G +  GKQ+H Y    G   G ++  + 
Sbjct: 181 EAFRCMLDEDVEPSSFTLVSVALACSNFPMPEG-LLMGKQVHAY----GLRKGELNSFII 235

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           + L  MYGK   + SS  +  S  GR L   N++++SL  +    +A+E    MV EG+ 
Sbjct: 236 NTLVAMYGKMGKLASSKVLLGSFEGRDLVTWNTVLSSLCQNEQFLEALEYLREMVLEGVE 295

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIELS 471
            D  T+S+ L A S       G  + LH  A+K+G  + N  V  +L+D Y  C  +   
Sbjct: 296 PDGFTISSVLPACSHLEMLRTG--KELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSG 353

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM-LEVMIQRGLIPDKVTFLCVLAGCNH 530
            +VF+ +    +  + +++ GY++N    EAL + +E+    GL+ +  T   V+  C  
Sbjct: 354 CRVFDGMFDRKIGLWNAMITGYAQNEYDEEALLLFIEMEESAGLLANSTTMAGVVPACVR 413

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG   + + +   +    G+D DR   + ++DM  R G +D A+ +  +     D + W+
Sbjct: 414 SGAFSKKEAIHGFVVK-RGLDRDRFVQNALMDMYSRLGKIDIAKRIFGKME-DRDLVTWN 471

Query: 591 SLL 593
           +++
Sbjct: 472 TII 474


>gi|224103989|ref|XP_002313273.1| predicted protein [Populus trichocarpa]
 gi|222849681|gb|EEE87228.1| predicted protein [Populus trichocarpa]
          Length = 680

 Score =  321 bits (823), Expect = 6e-85,   Method: Compositional matrix adjust.
 Identities = 193/626 (30%), Positives = 346/626 (55%), Gaps = 13/626 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
           +++  N  +  +   G L   K++FDEM  RD+V++N +I          +A++L+ EM 
Sbjct: 41  DVFVGNTLLLFYGNCGGLKDVKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMN 100

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +  G + +  +  SVL VC+       G QIHC V+  G    + +G+ LVD+Y + G  
Sbjct: 101 LRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYV 160

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +  +FDE+ ERN  +WN ++ +   L R  + L M+  M   GV+PN ++F  M+   
Sbjct: 161 KDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVL 220

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               L D GK++H   ++ G ++ +IFVANAL+D Y+  G  ++A   F+ I   +++SW
Sbjct: 221 VELKLFDFGKEIHGFSLRFG-LESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSW 279

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++V+ +A   L   A++L  +MQ   + P+  +F   L   +R G +  GK+IH    +
Sbjct: 280 NAMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIR 339

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G     + V +ALTDMY KC  +  +  VF+ +  R     N L+     + N  +++ 
Sbjct: 340 TG-SSVDLFVSNALTDMYAKCGCLNLARRVFKISL-RDEVSYNILIIGYSQTTNCSESLR 397

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSL 458
           +F  M  +G+ LD V+         +SA ANL + +    +H  A++    +++ ++ +L
Sbjct: 398 LFLEMGIKGMKLDVVSYMGV-----ISACANLAALKQGKEVHGLAVRKHLHTHLFIANAL 452

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y +CG I+L+ +VF +IPS +   + S++ GY   G    A+++ E M + G+  D 
Sbjct: 453 LDFYIKCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDS 512

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           V+++ VL+ C+H G+V+EG+  F  M+ V  I   + HY+CM+D+LGRAG++++A +L++
Sbjct: 513 VSYIAVLSACSHGGLVEEGKKYFEHMQ-VQNIKPTQMHYACMVDLLGRAGLIEEAVKLIE 571

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   D  +W +LL +CR+HG   +    A  L +L+P     YS +SN Y+E G+++ 
Sbjct: 572 SLPIEPDANVWGALLGACRIHGYIELAHWAAEHLFKLKPQHSGYYSVLSNMYAEAGKWDE 631

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
           + Q+R+   +R   ++ G S +++++
Sbjct: 632 ANQVRKLMKSRGAKKNPGCSWVQIDN 657



 Score =  191 bits (486), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 120/479 (25%), Positives = 240/479 (50%), Gaps = 6/479 (1%)

Query: 2   LSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHL 60
           L +   P + +I ++ P C  +    +   +  Y  +      +   N  +D + K G++
Sbjct: 101 LRSGFRPNMVSIVSVLPVCAGLEDGVTGRQIHCYVVKTGLDSQVTVGNALVDVYGKCGYV 160

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             ++++FDE+  R+ V++N +I+        + AL ++  M+  G+K ++ TFSS+L V 
Sbjct: 161 KDSRRVFDEISERNGVSWNAIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVL 220

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
                +  G +IH   L  G   ++++ + L+D+Y + G S++A ++F+++ E+N+ +WN
Sbjct: 221 VELKLFDFGKEIHGFSLRFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWN 280

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            M+  F +       + +  +M+A+G  PN ++F  ++  C+    L  GK++H+  I+ 
Sbjct: 281 AMVANFAQNRLELAAVDLVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEIHARAIRT 340

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G   V++FV+NAL D Y+ CG L  A++ F  I + D +S+N ++  Y+      ++L L
Sbjct: 341 G-SSVDLFVSNALTDMYAKCGCLNLARRVFK-ISLRDEVSYNILIIGYSQTTNCSESLRL 398

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F  M +   +  + S++  ++  +    +  GK++HG   +    H  + + +AL D Y 
Sbjct: 399 FLEMGIKGMKLDVVSYMGVISACANLAALKQGKEVHGLAVRKHL-HTHLFIANALLDFYI 457

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           KC  I+ +  VF   P R     NS++      G +  A+ +F  M ++G+  D V+   
Sbjct: 458 KCGRIDLAGKVFRQIPSRDTASWNSMILGYGMLGELTIAINLFEAMKEDGVEYDSVSYIA 517

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
            L A S       G     H   +++   + +  +C ++D   R G IE + ++ E +P
Sbjct: 518 VLSACSHGGLVEEGKKYFEH-MQVQNIKPTQMHYAC-MVDLLGRAGLIEEAVKLIESLP 574



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 116/374 (31%), Positives = 205/374 (54%), Gaps = 6/374 (1%)

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           GV  +  +F ++++ C+  + + +G+++H  V KLG+ D ++FV N L+ FY  CG L +
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGF-DSDVFVGNTLLLFYGNCGGLKD 60

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFAS 324
            K+ FD +   DV+SWNS++ +++ +    +A+ LF  M L    RP++ S V  L   +
Sbjct: 61  VKRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCA 120

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
              +   G+QIH YV K G D   V V +AL D+YGKC  ++ S  VF+    R+    N
Sbjct: 121 GLEDGVTGRQIHCYVVKTGLD-SQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWN 179

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           +++TSL +    +DA+EMF  M+D G+  + VT S+ L  L      + G  + +H  ++
Sbjct: 180 AIITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFG--KEIHGFSL 237

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           + G ES+I V+ +L+D Y++ G    +  VF +I   N+V + +++  +++N +   A+D
Sbjct: 238 RFGLESDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVD 297

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           ++  M   G IP+ VTF  VL  C   G ++ G+ + ++     G   D    + + DM 
Sbjct: 298 LVRQMQADGEIPNSVTFTNVLPACARIGFLRPGKEI-HARAIRTGSSVDLFVSNALTDMY 356

Query: 565 GRAGILDKAEELLQ 578
            + G L+ A  + +
Sbjct: 357 AKCGCLNLARRVFK 370



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/500 (27%), Positives = 250/500 (50%), Gaps = 28/500 (5%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++    TF  VL  C+++    +G +IH  V  LGF  ++++G+ L+  Y   G     
Sbjct: 2   GVRLDDHTFPFVLKACADSLSVQKGREIHGVVFKLGFDSDVFVGNTLLLFYGNCGGLKDV 61

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSI 223
             +FDE+ ER++ +WN ++  F       E + ++ +M    G  PN +S   ++  C+ 
Sbjct: 62  KRVFDEMLERDVVSWNSVIGVFSVHGFYAEAIHLFCEMNLRSGFRPNMVSIVSVLPVCAG 121

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                 G+Q+H +V+K G +D  + V NALVD Y  CG + ++++ FD I   + +SWN+
Sbjct: 122 LEDGVTGRQIHCYVVKTG-LDSQVTVGNALVDVYGKCGYVKDSRRVFDEISERNGVSWNA 180

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           I++  A  +   DALE+F  M     +P+  +F   L          FGK+IHG+  + G
Sbjct: 181 IITSLAYLERNQDALEMFRLMIDGGVKPNSVTFSSMLPVLVELKLFDFGKEIHGFSLRFG 240

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            +   + V +AL DMY K      +  VF     +++   N+++ +   +     AV++ 
Sbjct: 241 LE-SDIFVANALIDMYAKSGRSLQASNVFNQIGEKNIVSWNAMVANFAQNRLELAAVDLV 299

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMD 460
             M  +G   + VT +  L      A A +G  R    +H  AI++G   ++ VS +L D
Sbjct: 300 RQMQADGEIPNSVTFTNVL-----PACARIGFLRPGKEIHARAIRTGSSVDLFVSNALTD 354

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG + L+ +VF KI   + V +  ++ GYS+     E+L +   M  +G+  D V+
Sbjct: 355 MYAKCGCLNLARRVF-KISLRDEVSYNILIIGYSQTTNCSESLRLFLEMGIKGMKLDVVS 413

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY-------SCMIDMLGRAGILDKA 573
           ++ V++ C +   +K+G       K V+G+ A R+H        + ++D   + G +D A
Sbjct: 414 YMGVISACANLAALKQG-------KEVHGL-AVRKHLHTHLFIANALLDFYIKCGRIDLA 465

Query: 574 EELLQQTPGGGDCMMWSSLL 593
            ++ +Q P   D   W+S++
Sbjct: 466 GKVFRQIP-SRDTASWNSMI 484


>gi|356544234|ref|XP_003540559.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Glycine max]
          Length = 916

 Score =  321 bits (823), Expect = 7e-85,   Method: Compositional matrix adjust.
 Identities = 188/659 (28%), Positives = 362/659 (54%), Gaps = 17/659 (2%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+ ++     S+  L+  LL+ ++  +   + +IY ++  I+ + K    + A+++FD +
Sbjct: 219 TLASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAI 278

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             ++M+ +N ++    +       + L+ +M+S GI     T++S+LS C+   +   G 
Sbjct: 279 SQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGR 338

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  ++   F  NL++ + L+D+Y + G    A   F+ +  R+  +WN ++  + +  
Sbjct: 339 QLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEE 398

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                  ++ +M  +G+ P+ +S   ++  C    +L+ G+Q H   +KLG ++ N+F  
Sbjct: 399 VEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLG-LETNLFAG 457

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           ++L+D YS CG + +A K++  +P   V+S N++++ YA  +   +++ L   MQ+   +
Sbjct: 458 SSLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALKN-TKESINLLHEMQILGLK 516

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           PS  +F   ++    +  V  G QIH  + K G   GS  + ++L  MY     +  +  
Sbjct: 517 PSEITFASLIDVCKGSAKVILGLQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADANI 576

Query: 371 VF-ESAPGRSLECCNSLMTSLLHSGNIKD-----AVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +F E +  +S+     +M + L SG+I++     A+ ++  M D  I  D+ T  T L+A
Sbjct: 577 LFSEFSSLKSI-----VMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQA 631

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP-NV 483
            ++ +S + G  R +H     +GF+ +   S +L+D Y++CG ++ S QVFE++ +  +V
Sbjct: 632 CALLSSLHDG--REIHSLIFHTGFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDV 689

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           + + S++ G+++NG  + AL + + M Q  + PD VTFL VL  C+H+G V EG+ +F+ 
Sbjct: 690 ISWNSMIVGFAKNGYAKCALKVFDEMTQSCITPDDVTFLGVLTACSHAGWVYEGRQIFDV 749

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M + YGI+    HY+CM+D+LGR G L +AEE + +     + M+W++LL +CR+HG+E 
Sbjct: 750 MVNYYGIEPRVDHYACMVDLLGRWGFLKEAEEFIDKLEVEPNAMIWANLLGACRIHGDEK 809

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            G+R A  L+ELEP   + Y  +SN Y+  G ++ +  +R T + + + +  G S I V
Sbjct: 810 RGQRAAKKLIELEPQSSSPYVLLSNMYAASGNWDEARSLRRTMIKKDIQKIPGCSWIVV 868



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 166/606 (27%), Positives = 299/606 (49%), Gaps = 34/606 (5%)

Query: 11  RTITTLAPTCTSIVPLSSSLLLDSYCQ---PNPQLNIYSSNRT------------IDDFV 55
           RTI   AP    +  +S + L+  Y Q   P+  L+I+   R             ++ ++
Sbjct: 102 RTIFASAPF-PHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVPDQVALVTVLNAYI 160

Query: 56  KSGHLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
             G L+ A +LF +MP   R++V +N++ISG  K  H ++AL  + +M  HG+K S ST 
Sbjct: 161 SLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTL 220

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +SVLS  ++      G+ +H   +  GF  ++Y+ S L+++Y +      A  +FD + +
Sbjct: 221 ASVLSAIASLAALNHGLLVHAHAIKQGFESSIYVASSLINMYGKCQMPDDARQVFDAISQ 280

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           +N+  WN ML  + +      V+ ++  M + G+ P+  ++  ++  C+    L+ G+QL
Sbjct: 281 KNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEVGRQL 340

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           HS +IK  +   N+FV NAL+D Y+  G+L EA K F+ +   D ISWN+I+  Y   ++
Sbjct: 341 HSAIIKKRFTS-NLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGYVQEEV 399

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
              A  LF RM L    P   S    L+       +  G+Q H    KLG +  ++   S
Sbjct: 400 EAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQFHCLSVKLGLE-TNLFAGS 458

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           +L DMY KC  I+ +   + S P RS+   N+L+       N K+++ +   M   G+  
Sbjct: 459 SLIDMYSKCGDIKDAHKTYSSMPERSVVSVNALIAGYALK-NTKESINLLHEMQILGLKP 517

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA-VSCSLMDAYSRCGHIELSH 472
            E+T ++ +     SA   LG    +HC  +K G       +  SL+  Y     +  ++
Sbjct: 518 SEITFASLIDVCKGSAKVILG--LQIHCAIVKRGLLCGSEFLGTSLLGMYMDSQRLADAN 575

Query: 473 QVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            +F +  S  ++V +T++++G+ +N     AL++   M    + PD+ TF+ VL  C   
Sbjct: 576 ILFSEFSSLKSIVMWTALISGHIQNECSDVALNLYREMRDNNISPDQATFVTVLQACALL 635

Query: 532 GMVKEGQ----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
             + +G+    L+F++     G D D    S ++DM  + G +  + ++ ++     D +
Sbjct: 636 SSLHDGREIHSLIFHT-----GFDLDELTSSALVDMYAKCGDVKSSVQVFEELATKKDVI 690

Query: 588 MWSSLL 593
            W+S++
Sbjct: 691 SWNSMI 696



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 118/508 (23%), Positives = 228/508 (44%), Gaps = 46/508 (9%)

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +N  + G  K    ++ L  Y   ++ G      TF+  LS C+       G  +H  V+
Sbjct: 16  WNWRVQGT-KHYSSERVLQFYASFMNSGHSPDQFTFAVTLSACAKLQNLHLGRAVHSCVI 74

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT--WNLMLRAFCELSRPDEV 195
             G     +    L+ LY +      A  +F   P  +L T  W  ++  + +   P E 
Sbjct: 75  KSGLESTSFCQGALIHLYAKCNSLTCARTIFASAPFPHLHTVSWTALISGYVQAGLPHEA 134

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L +++KM+   V P+ ++                                 + V NA   
Sbjct: 135 LHIFDKMRNSAV-PDQVAL--------------------------------VTVLNA--- 158

Query: 256 FYSACGSLIEAKKSFDF--IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
            Y + G L +A + F    IP+ +V++WN ++S +A      +AL  F +M     + S 
Sbjct: 159 -YISLGKLDDACQLFQQMPIPIRNVVAWNVMISGHAKTAHYEEALAFFHQMSKHGVKSSR 217

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            +    L+  +    +  G  +H +  K GF+  S++V S+L +MYGKC + + +  VF+
Sbjct: 218 STLASVLSAIASLAALNHGLLVHAHAIKQGFE-SSIYVASSLINMYGKCQMPDDARQVFD 276

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
           +   +++   N+++     +G + + +E+F  M+  GI  DE T ++ L   +      +
Sbjct: 277 AISQKNMIVWNAMLGVYSQNGFLSNVMELFLDMISCGIHPDEFTYTSILSTCACFEYLEV 336

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G  R LH   IK  F SN+ V+ +L+D Y++ G ++ + + FE +   + + + +I+ GY
Sbjct: 337 G--RQLHSAIIKKRFTSNLFVNNALIDMYAKAGALKEAGKHFEHMTYRDHISWNAIIVGY 394

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
            +  +   A  +   MI  G++PD+V+   +L+ C +  +++ GQ  F+ +    G++ +
Sbjct: 395 VQEEVEAGAFSLFRRMILDGIVPDEVSLASILSACGNIKVLEAGQQ-FHCLSVKLGLETN 453

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTP 581
               S +IDM  + G +  A +     P
Sbjct: 454 LFAGSSLIDMYSKCGDIKDAHKTYSSMP 481



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 64/288 (22%), Positives = 126/288 (43%), Gaps = 47/288 (16%)

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   +F   L+  ++  N++ G+ +H  V K G +  S   Q AL  +Y KCN +  +  
Sbjct: 45  PDQFTFAVTLSACAKLQNLHLGRAVHSCVIKSGLESTSF-CQGALIHLYAKCNSLTCART 103

Query: 371 VFESAPGRSLECCN--SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           +F SAP   L   +  +L++  + +G   +A+ +F  M +  +  D+V L T L      
Sbjct: 104 IFASAPFPHLHTVSWTALISGYVQAGLPHEALHIFDKMRNSAVP-DQVALVTVL------ 156

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP--NVVCF 486
                                          +AY   G ++ + Q+F+++P P  NVV +
Sbjct: 157 -------------------------------NAYISLGKLDDACQLFQQMPIPIRNVVAW 185

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMK 545
             +++G+++     EAL     M + G+   + T   VL+       +  G LV  +++K
Sbjct: 186 NVMISGHAKTAHYEEALAFFHQMSKHGVKSSRSTLASVLSAIASLAALNHGLLVHAHAIK 245

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
              G ++     S +I+M G+  + D A ++        + ++W+++L
Sbjct: 246 Q--GFESSIYVASSLINMYGKCQMPDDARQVFDAI-SQKNMIVWNAML 290


>gi|225445386|ref|XP_002281711.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic [Vitis vinifera]
          Length = 711

 Score =  321 bits (823), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 174/534 (32%), Positives = 302/534 (56%), Gaps = 9/534 (1%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDL--YMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           QIH ++L     ++ +  S +V        G    A  +F+++P     T N ++R +  
Sbjct: 58  QIHAQMLRTCLFVDPFSASKIVAFCALHDSGSLPYARLVFNQIPNPTTFTCNSIIRGYTN 117

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
            + P + +  Y  M  +G++P+  +F  + + C +   L EGKQLH H  KLG+   + +
Sbjct: 118 KNLPRQAILFYQLMMLQGLDPDRFTFPSLFKSCGV---LCEGKQLHCHSTKLGFAS-DAY 173

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           + N L++ YS CG L+ A+K FD +    V+SW +++  YA +DL  +A++LF RM++  
Sbjct: 174 IQNTLMNMYSNCGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPHEAIKLFRRMEIAS 233

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P+  + V  L   +R+ ++   KQ+H Y+ + G    +V + SAL D+Y KC     +
Sbjct: 234 VKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTV-LTSALMDVYCKCGCYPLA 292

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F   P ++L C N ++   +   + ++A+ +F  M   G+  D+VT+++ L A +  
Sbjct: 293 RDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKVTMASLLIACTHL 352

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            +  LG  + LH    K   E ++A+  +L+D Y++CG IE + +VF+++P  +V+ +T+
Sbjct: 353 GALELG--KWLHVYIEKEKIEVDVALGTALVDMYAKCGSIESAMRVFQEMPEKDVMTWTA 410

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ G +  G G +AL++   M    + PD +TF+ VLA C+H+G+V EG   FNSM + Y
Sbjct: 411 LIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEGIAYFNSMPNKY 470

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           GI    +HY CM+DMLGRAG + +AE+L+Q  P   D  +   LL +CR+HGN ++  R 
Sbjct: 471 GIQPSIEHYGCMVDMLGRAGRIAEAEDLIQNMPMAPDYFVLVGLLSACRIHGNLVVAERA 530

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           A  L+EL+P +   Y  +SN YS +  +E + ++RE  + R + +  G S IEV
Sbjct: 531 AQQLIELDPKNGGTYVLLSNIYSSMKNWEAAKKMRELMVERNIKKPPGCSAIEV 584



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/462 (25%), Positives = 220/462 (47%), Gaps = 11/462 (2%)

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           SG L  A+ +F+++P     T N +I G      P+QA+  Y  M+  G+     TF S+
Sbjct: 87  SGSLPYARLVFNQIPNPTTFTCNSIIRGYTNKNLPRQAILFYQLMMLQGLDPDRFTFPSL 146

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
              C   G   EG Q+HC    LGF  + YI + L+++Y   G  V A  +FD++  +++
Sbjct: 147 FKSC---GVLCEGKQLHCHSTKLGFASDAYIQNTLMNMYSNCGCLVSARKVFDKMVNKSV 203

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +W  M+ A+ +   P E ++++ +M+   V+PN ++   ++  C+    L+  KQ+H +
Sbjct: 204 VSWATMIGAYAQWDLPHEAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKY 263

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           + + G +  +  + +AL+D Y  CG    A+  F+ +P  ++  WN +++ + +     +
Sbjct: 264 IDETG-IGFHTVLTSALMDVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEE 322

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           AL LF  MQL   +    +    L   +  G +  GK +H Y+ K   +   V + +AL 
Sbjct: 323 ALSLFNEMQLSGVKGDKVTMASLLIACTHLGALELGKWLHVYIEKEKIE-VDVALGTALV 381

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           DMY KC  IES++ VF+  P + +    +L+  L   G    A+E+F  M    +  D +
Sbjct: 382 DMYAKCGSIESAMRVFQEMPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAI 441

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T    L A S +   N G     +    K G + +I     ++D   R G I  +  + +
Sbjct: 442 TFVGVLAACSHAGLVNEG-IAYFNSMPNKYGIQPSIEHYGCMVDMLGRAGRIAEAEDLIQ 500

Query: 477 KIP-SPNVVCFTSIMNGYSRNG----MGREALDMLEVMIQRG 513
            +P +P+      +++    +G      R A  ++E+  + G
Sbjct: 501 NMPMAPDYFVLVGLLSACRIHGNLVVAERAAQQLIELDPKNG 542



 Score =  156 bits (394), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/349 (28%), Positives = 177/349 (50%), Gaps = 21/349 (6%)

Query: 33  DSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK 92
           D+Y Q N  +N+YS+          G L SA+K+FD+M  + +V++  +I    ++  P 
Sbjct: 171 DAYIQ-NTLMNMYSN---------CGCLVSARKVFDKMVNKSVVSWATMIGAYAQWDLPH 220

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +A+ L+  M    +K +  T  +VL+ C+ +       Q+H  +   G G +  + S L+
Sbjct: 221 EAIKLFRRMEIASVKPNEITLVNVLTACARSRDLETAKQVHKYIDETGIGFHTVLTSALM 280

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D+Y + G    A DLF+++PE+NL  WN+M+    E S  +E L ++N+M+  GV+ + +
Sbjct: 281 DVYCKCGCYPLARDLFNKMPEKNLFCWNIMINGHVEDSDYEEALSLFNEMQLSGVKGDKV 340

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  C+    L+ GK LH ++ K   ++V++ +  ALVD Y+ CGS+  A + F  
Sbjct: 341 TMASLLIACTHLGALELGKWLHVYIEKEK-IEVDVALGTALVDMYAKCGSIESAMRVFQE 399

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV--- 329
           +P  DV++W +++   A       ALELF  MQ+   +P   +FV  L   S  G V   
Sbjct: 400 MPEKDVMTWTALIVGLAMCGQGLKALELFHEMQMSEVKPDAITFVGVLAACSHAGLVNEG 459

Query: 330 --YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
             YF    + Y  +   +H        + DM G+   I  +  + ++ P
Sbjct: 460 IAYFNSMPNKYGIQPSIEH-----YGCMVDMLGRAGRIAEAEDLIQNMP 503


>gi|449467092|ref|XP_004151259.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Cucumis sativus]
          Length = 849

 Score =  321 bits (823), Expect = 8e-85,   Method: Compositional matrix adjust.
 Identities = 198/671 (29%), Positives = 358/671 (53%), Gaps = 19/671 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P ++T +     C         +L+ +   Q + QL+  + N  I  + K G    A  +
Sbjct: 64  PDLQTYSLFLKKCIRTRSFDIGTLVHEKLTQSDLQLDSVTLNSLISLYSKCGQWEKATSI 123

Query: 67  FDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           F  M  +RD+++++ ++S         +AL  + +M+ +G   +   F++    CS A F
Sbjct: 124 FQLMGSSRDLISWSAMVSCFANNNMGFRALLTFVDMIENGYYPNEYCFAAATRACSTAEF 183

Query: 126 YTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMR-MGPSVRALDLFDELPERNLATWNLML 183
            + G  I   V+  G+   ++ +G  L+D++++  G  V A  +F+++PERN  TW LM+
Sbjct: 184 VSVGDSIFGFVVKTGYLQSDVCVGCGLIDMFVKGRGDLVSAFKVFEKMPERNAVTWTLMI 243

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
               +     E + ++ +M   G EP+  +   ++  C+   LL  G+QLHS  I+ G +
Sbjct: 244 TRLMQFGYAGEAIDLFLEMILSGYEPDRFTLSGVISACANMELLLLGQQLHSQAIRHG-L 302

Query: 244 DVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVISWNSIVSIYAD---YDLIFDA 297
            ++  V   L++ Y+ C   GS+  A+K FD I   +V SW ++++ Y     YD   +A
Sbjct: 303 TLDRCVGCCLINMYAKCSVDGSMCAARKIFDQILDHNVFSWTAMITGYVQKGGYDE--EA 360

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH-VQSALT 356
           L+LF  M L    P+  +F   L   +    +  G+Q+  +  KLGF   SV+ V ++L 
Sbjct: 361 LDLFRGMILTHVIPNHFTFSSTLKACANLAALRIGEQVFTHAVKLGFS--SVNCVANSLI 418

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY +   I+ +   F+    ++L   N+++ +   + N ++A+E+F  + D+G+G    
Sbjct: 419 SMYARSGRIDDARKAFDILFEKNLISYNTVIDAYAKNLNSEEALELFNEIEDQGMGASAF 478

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T ++ L     ++   +G    +H   IKSG + N +V  +L+  YSRCG+IE + QVFE
Sbjct: 479 TFASLLSG--AASIGTIGKGEQIHARVIKSGLKLNQSVCNALISMYSRCGNIESAFQVFE 536

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            +   NV+ +TSI+ G++++G   +AL++   M++ G+ P+ VT++ VL+ C+H G+V E
Sbjct: 537 DMEDRNVISWTSIITGFAKHGFATQALELFHKMLEEGVRPNLVTYIAVLSACSHVGLVNE 596

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G   F SM + +G+    +HY+CM+D+LGR+G L +A + +   P   D ++W + L +C
Sbjct: 597 GWKHFKSMYTEHGVIPRMEHYACMVDILGRSGSLSEAIQFINSMPYKADALVWRTFLGAC 656

Query: 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           RVHGN  +G+  A +++E EP D A Y  +SN Y+   +++    IR+    + L ++ G
Sbjct: 657 RVHGNLELGKHAAKMIIEQEPHDPAAYILLSNLYASTSKWDEVSNIRKAMKEKNLIKEAG 716

Query: 657 HSLIEV-NSCH 666
            S +EV N  H
Sbjct: 717 CSWVEVENKVH 727


>gi|224069617|ref|XP_002303012.1| predicted protein [Populus trichocarpa]
 gi|222844738|gb|EEE82285.1| predicted protein [Populus trichocarpa]
          Length = 815

 Score =  321 bits (822), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 188/627 (29%), Positives = 340/627 (54%), Gaps = 12/627 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N +S +  I  +VKSG+L  A+++FD+   R +V +  +I    K      A  L+ 
Sbjct: 70  PNRNSFSIDIIISGYVKSGNLTVARRIFDDTDERTVVAWTTMIGAYSKSNRFGDAFKLFA 129

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G +    T+ ++L+ C++     E  Q H +++ LG  LN  + + L+D Y + G
Sbjct: 130 EMHRSGSQPDYVTYITLLTGCNDLEVAKELYQAHAQIVKLGHHLNHRVCNTLLDSYFKTG 189

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF E+   +  ++N+M+  +      +E + ++ +M+  G +P+  +F  ++ 
Sbjct: 190 GLDSARRLFLEMCGWDSVSFNVMITGYANNGLNEEAIELFVEMQNLGFKPSDFTFAAVI- 248

Query: 220 GCSIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             S+G  LD+   G+Q+H  V+K  ++  N+FV NA +DFYS    + E +K F+ +P  
Sbjct: 249 SASVG--LDDTAFGQQIHGFVVKTSFIR-NVFVGNAFLDFYSKHDCVNEVRKLFNEMPEL 305

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D +S+N I++ YA    + ++++LF  +Q          F   L+ A+ + ++  G+Q+H
Sbjct: 306 DGVSYNVIITAYAWVGKVKESIDLFQELQFTTFDRKNFPFPTMLSIAASSLDLQMGRQLH 365

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             V  +        V ++L DMY KC   E +  +F     RS     +++++ +  G  
Sbjct: 366 AQVV-VSMADPDFRVSNSLVDMYAKCGKFEEADRIFLRLSSRSTVPWTAMISANVQRGLH 424

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++ +++F  M    +  D+ T +  LKA +  AS  LG  + LH C I+SGF  N+   C
Sbjct: 425 ENGLKLFYEMRRANVSADQATFACVLKASANLASILLG--KQLHSCVIRSGF-MNVYSGC 481

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y+ C  I+ + + FE++   NVV + ++++ Y++NG G+  L   E MI  G  P
Sbjct: 482 ALLDMYANCASIKDAIKTFEEMSERNVVTWNALLSAYAQNGDGKGTLKSFEEMIMSGYQP 541

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D V+FLC+L  C+H  +V+EG   FN M  VY +   R+HY+ M+D L R+G  D+AE+L
Sbjct: 542 DSVSFLCILTACSHCRLVEEGLKYFNDMSGVYNLAPKREHYTAMVDALCRSGRFDEAEKL 601

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGE 635
           + Q P   D ++W+S+L SCR+H N  + R+ A  L  ++ + D A Y  +SN ++E G+
Sbjct: 602 MGQMPFEPDEIVWTSVLNSCRIHKNYALARKAAGQLFNMKVLRDAAPYVTMSNIFAEAGQ 661

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++  +++++    R + +   +S +E+
Sbjct: 662 WDSVVKVKKAMRDRGVRKLPAYSWVEI 688


>gi|449438685|ref|XP_004137118.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
 gi|449528041|ref|XP_004171015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 868

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 177/621 (28%), Positives = 327/621 (52%), Gaps = 4/621 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ + +  +D + K   L  +  +F E+P ++ ++++  I+GC +     + L L+ EM 
Sbjct: 191 DVVTGSALVDMYAKCNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQ 250

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI  S ST++SV   C+       G Q+HC  L   FG ++ +G+  +D+Y +     
Sbjct: 251 RKGIGVSQSTYASVFRSCAGLSASRLGTQLHCHALKTDFGSDVIVGTATLDMYAKCDNMS 310

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  LP+ NL ++N M+  +    +  +  +++ +++      + +S    +   +
Sbjct: 311 DAYKLFSLLPDHNLQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAA 370

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +     EG QLH   IK   +  NI VANA++D Y  CG+L+EA   FD + + D +SWN
Sbjct: 371 VIKGHSEGLQLHGLAIKSN-LSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWN 429

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++     +     L  F  M   +  P   ++   L   +       G ++HG + K 
Sbjct: 430 AIITACEQNESEGKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKS 489

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     + V SAL DMY KC ++E +  +      +++   N++++        +D+   
Sbjct: 490 GMGL-KMFVGSALVDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRF 548

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M++ G+  D  T +T L   +  A+  LG  + +H   IK    S++ ++ +L+D Y
Sbjct: 549 FSHMLEMGVEPDNFTYATVLDTCANLATVGLG--KQIHAQMIKLELLSDVYITSTLVDMY 606

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           S+CG++  S  +F K P  + V + +++ G++ +G+G EAL++ E M+   + P+  TF+
Sbjct: 607 SKCGNMHDSLLMFRKAPKRDSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFV 666

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  C+H G  K+G   F  M S+Y ++   +HYSCM+D+LGR+G +++A  L+Q  P 
Sbjct: 667 SVLRACSHVGNAKKGLFYFQKMASIYALEPQLEHYSCMVDILGRSGQVEEALRLIQDMPF 726

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D ++W +LL  C++ GN  +  + A+ L++L+P D + Y+ +SN Y++ G ++   +I
Sbjct: 727 EADAIIWRTLLSICKIQGNVEVAEKAASSLLKLDPEDSSAYTLLSNIYADAGMWQQVSKI 786

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R+T  +  L ++ G S IEV 
Sbjct: 787 RQTMRSHNLKKEPGCSWIEVK 807



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 141/562 (25%), Positives = 276/562 (49%), Gaps = 7/562 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLY 98
           PQ +I S N  +     +G +  A+ +F+ MP   D+V++N LISG  +    ++++ ++
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            +M   G+    +T +  L +CS       GIQIH   + +GF  ++  GS LVD+Y + 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGFDYDVVTGSALVDMYAKC 205

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                +LD+F ELP++N  +W+  +    +  +    L+++ +M+ +G+  +  ++  + 
Sbjct: 206 NSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASVF 265

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           R C+       G QLH H +K  +   ++ V  A +D Y+ C ++ +A K F  +P  ++
Sbjct: 266 RSCAGLSASRLGTQLHCHALKTDF-GSDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHNL 324

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            S+N+++  YA  +  F A +LF ++Q         S    L+ A+       G Q+HG 
Sbjct: 325 QSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEGLQLHGL 384

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K      ++ V +A+ DMYGKC  +  +  +F+    R     N+++T+   + +   
Sbjct: 385 AIKSNLS-SNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGK 443

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            +  FG M+   +  DE T  + LKA +   + + G    +H   IKSG    + V  +L
Sbjct: 444 TLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNG--MEVHGRIIKSGMGLKMFVGSAL 501

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D YS+CG +E + ++  ++    +V + +I++G+S      ++      M++ G+ PD 
Sbjct: 502 VDMYSKCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDN 561

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            T+  VL  C +   V  G+ +   M  +  + +D    S ++DM  + G +  +  + +
Sbjct: 562 FTYATVLDTCANLATVGLGKQIHAQMIKLELL-SDVYITSTLVDMYSKCGNMHDSLLMFR 620

Query: 579 QTPGGGDCMMWSSLLRSCRVHG 600
           + P   D + W++++     HG
Sbjct: 621 KAP-KRDSVTWNAMICGFAYHG 641



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 177/345 (51%), Gaps = 11/345 (3%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           + N   NI  +N  +D + K G L  A  LFDEM  RD V++N +I+ C +     + L 
Sbjct: 387 KSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESEGKTLS 446

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
            +  M+   ++    T+ SVL  C+    ++ G+++H R++  G GL +++GS LVD+Y 
Sbjct: 447 HFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVGSALVDMYS 506

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A  +   L E+ + +WN ++  F    + ++  R ++ M   GVEP+  ++  
Sbjct: 507 KCGMMEEAEKIHYRLEEQTMVSWNAIISGFSLQKKSEDSQRFFSHMLEMGVEPDNFTYAT 566

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++  C+    +  GKQ+H+ +IKL  +  ++++ + LVD YS CG++ ++   F   P  
Sbjct: 567 VLDTCANLATVGLGKQIHAQMIKLELLS-DVYITSTLVDMYSKCGNMHDSLLMFRKAPKR 625

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YF 331
           D ++WN+++  +A + L  +ALELF  M     +P+  +FV  L   S  GN      YF
Sbjct: 626 DSVTWNAMICGFAYHGLGEEALELFEHMLHENIKPNHATFVSVLRACSHVGNAKKGLFYF 685

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            K    Y  +   +H      S + D+ G+   +E ++ + +  P
Sbjct: 686 QKMASIYALEPQLEH-----YSCMVDILGRSGQVEEALRLIQDMP 725



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 137/589 (23%), Positives = 261/589 (44%), Gaps = 63/589 (10%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TFS +   CSN      G + H  ++  GF   +++ + L+ +Y++      A  +F+E+
Sbjct: 26  TFSHIFQECSNRRALKPGKEAHAHMILSGFTPTVFVTNCLIQMYVKCCALEYAYKVFEEM 85

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG--VEPNGLSFCYMVRG--------- 220
           P+R++ +WN M+       R +    ++N M   G  V  N L   Y+  G         
Sbjct: 86  PQRDIVSWNTMVFGCAGAGRMELAQAVFNSMPHHGDVVSWNSLISGYLQNGDIQKSIAVF 145

Query: 221 ---CSIGMLLDE------------------GKQLHSHVIKLGWVDVNIFVANALVDFYSA 259
                +G++ D                   G Q+H   +++G+ D ++   +ALVD Y+ 
Sbjct: 146 LKMRDLGVMFDHTTLAVSLKICSLLEDQVLGIQIHGIAVQMGF-DYDVVTGSALVDMYAK 204

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319
           C SL ++   F  +P  + ISW++ ++     D +   L+LF  MQ      S  ++   
Sbjct: 205 CNSLEDSLDVFSELPDKNWISWSAAIAGCVQNDQLLRGLKLFKEMQRKGIGVSQSTYASV 264

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
               +       G Q+H +  K  F    V V +A  DMY KC+ +  +  +F   P  +
Sbjct: 265 FRSCAGLSASRLGTQLHCHALKTDFG-SDVIVGTATLDMYAKCDNMSDAYKLFSLLPDHN 323

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           L+  N+++     +     A ++F  +       DEV+LS  L A +V    + G    L
Sbjct: 324 LQSYNAMIIGYARNEQGFQAFKLFLQLQKNSFSFDEVSLSGALSAAAVIKGHSEG--LQL 381

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H  AIKS   SNI V+ +++D Y +CG +  +  +F+++   + V + +I+    +N   
Sbjct: 382 HGLAIKSNLSSNICVANAILDMYGKCGALVEASGLFDEMEIRDPVSWNAIITACEQNESE 441

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCN-----HSGMVKEGQLVFNSM--KSVYGIDA 552
            + L     M++  + PD+ T+  VL  C       +GM   G+++ + M  K   G   
Sbjct: 442 GKTLSHFGAMLRSKMEPDEFTYGSVLKACAGQRAFSNGMEVHGRIIKSGMGLKMFVG--- 498

Query: 553 DRQHYSCMIDMLGRAGILDKAEE----LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
                S ++DM  + G++++AE+    L +QT      + W++++    +       +R 
Sbjct: 499 -----SALVDMYSKCGMMEEAEKIHYRLEEQT-----MVSWNAIISGFSLQKKSEDSQRF 548

Query: 609 ANILMEL--EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
            + ++E+  EP +F  Y+ V +  + +    +  QI    +  +L  D+
Sbjct: 549 FSHMLEMGVEPDNF-TYATVLDTCANLATVGLGKQIHAQMIKLELLSDV 596


>gi|15228590|ref|NP_187008.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207453|sp|Q9SS60.1|PP210_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g03580
 gi|6091764|gb|AAF03474.1|AC009327_13 hypothetical protein [Arabidopsis thaliana]
 gi|28393735|gb|AAO42278.1| unknown protein [Arabidopsis thaliana]
 gi|29824355|gb|AAP04138.1| unknown protein [Arabidopsis thaliana]
 gi|332640438|gb|AEE73959.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 882

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 191/660 (28%), Positives = 353/660 (53%), Gaps = 6/660 (0%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNS 62
           +K+ P   T  ++   C  +       L+ +       + +++  N  +D + + G L  
Sbjct: 100 SKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTR 159

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+++FDEMP RD+V++N LISG     + ++AL +Y E+ +  I   + T SSVL    N
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGN 219

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                +G  +H   L  G    + + + LV +Y++      A  +FDE+  R+  ++N M
Sbjct: 220 LLVVKQGQGLHGFALKSGVNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTM 279

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  + +L   +E +RM+ +   +  +P+ L+   ++R C     L   K ++++++K G+
Sbjct: 280 ICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAGF 338

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           V +   V N L+D Y+ CG +I A+  F+ +   D +SWNSI+S Y     + +A++LF 
Sbjct: 339 V-LESTVRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFK 397

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M +  ++    +++  ++ ++R  ++ FGK +H    K G     + V +AL DMY KC
Sbjct: 398 MMMIMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGI-CIDLSVSNALIDMYAKC 456

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +  S+ +F S         N+++++ +  G+    +++   M    +  D  T   TL
Sbjct: 457 GEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFLVTL 516

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
              +  A+  LG  + +HCC ++ G+ES + +  +L++ YS+CG +E S +VFE++   +
Sbjct: 517 PMCASLAAKRLG--KEIHCCLLRFGYESELQIGNALIEMYSKCGCLENSSRVFERMSRRD 574

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           VV +T ++  Y   G G +AL+    M + G++PD V F+ ++  C+HSG+V EG   F 
Sbjct: 575 VVTWTGMIYAYGMYGEGEKALETFADMEKSGIVPDSVVFIAIIYACSHSGLVDEGLACFE 634

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            MK+ Y ID   +HY+C++D+L R+  + KAEE +Q  P   D  +W+S+LR+CR  G+ 
Sbjct: 635 KMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIKPDASIWASVLRACRTSGDM 694

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
               RV+  ++EL P D       SN Y+ + +++    IR++   + +T++ G+S IEV
Sbjct: 695 ETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSLKDKHITKNPGYSWIEV 754



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 139/574 (24%), Positives = 287/574 (50%), Gaps = 13/574 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           + S + ID +       S+  +F  + PA+++  +N +I    K     +AL  Y ++  
Sbjct: 40  FFSGKLIDKYSHFREPASSLSVFRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRE 99

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
             +     TF SV+  C+       G  ++ ++L +GF  +L++G+ LVD+Y RMG   R
Sbjct: 100 SKVSPDKYTFPSVIKACAGLFDAEMGDLVYEQILDMGFESDLFVGNALVDMYSRMGLLTR 159

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FDE+P R+L +WN ++  +      +E L +Y+++K   + P+  +   ++     
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGN 219

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
            +++ +G+ LH   +K G V+  + V N LV  Y       +A++ FD + V D +S+N+
Sbjct: 220 LLVVKQGQGLHGFALKSG-VNSVVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNT 278

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++  Y   +++ +++ +F    L + +P + +    L       ++   K I+ Y+ K G
Sbjct: 279 MICGYLKLEMVEESVRMFLE-NLDQFKPDLLTVSSVLRACGHLRDLSLAKYIYNYMLKAG 337

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           F   S  V++ L D+Y KC  + ++  VF S   +     NS+++  + SG++ +A+++F
Sbjct: 338 FVLEST-VRNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLF 396

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
             M+   I  ++    T L  +SVS   A+L   + LH   IKSG   +++VS +L+D Y
Sbjct: 397 KMMM---IMEEQADHITYLMLISVSTRLADLKFGKGLHSNGIKSGICIDLSVSNALIDMY 453

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG +  S ++F  + + + V + ++++   R G     L +   M +  ++PD  TFL
Sbjct: 454 AKCGEVGDSLKIFSSMGTGDTVTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATFL 513

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
             L  C      + G+ +   +   +G +++ Q  + +I+M  + G L+ +  + ++   
Sbjct: 514 VTLPMCASLAAKRLGKEIHCCLLR-FGYESELQIGNALIEMYSKCGCLENSSRVFERM-S 571

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
             D + W+ ++ +  ++G    G +      ++E
Sbjct: 572 RRDVVTWTGMIYAYGMYGE---GEKALETFADME 602



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 138/518 (26%), Positives = 254/518 (49%), Gaps = 14/518 (2%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           S+   S  LS  SN     E  +IH  V+SLG   + +    L+D Y        +L +F
Sbjct: 6   SSPFISRALSSSSN---LNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSVF 62

Query: 169 DEL-PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
             + P +N+  WN ++RAF +     E L  Y K++   V P+  +F  +++ C+     
Sbjct: 63  RRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFDA 122

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           + G  ++  ++ +G+ + ++FV NALVD YS  G L  A++ FD +PV D++SWNS++S 
Sbjct: 123 EMGDLVYEQILDMGF-ESDLFVGNALVDMYSRMGLLTRARQVFDEMPVRDLVSWNSLISG 181

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+ +    +ALE++  ++     P   +    L        V  G+ +HG+  K G  + 
Sbjct: 182 YSSHGYYEEALEIYHELKNSWIVPDSFTVSSVLPAFGNLLVVKQGQGLHGFALKSGV-NS 240

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            V V + L  MY K      +  VF+    R     N+++   L    ++++V MF   +
Sbjct: 241 VVVVNNGLVAMYLKFRRPTDARRVFDEMDVRDSVSYNTMICGYLKLEMVEESVRMFLENL 300

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           D+    D +T+S+ L+A       +L   + ++   +K+GF     V   L+D Y++CG 
Sbjct: 301 DQ-FKPDLLTVSSVLRA--CGHLRDLSLAKYIYNYMLKAGFVLESTVRNILIDVYAKCGD 357

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +  +  VF  +   + V + SI++GY ++G   EA+ + ++M+      D +T+L +++ 
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISV 417

Query: 528 CNHSGMVKEGQ-LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
                 +K G+ L  N +KS  GI  D    + +IDM  + G +  + ++     G GD 
Sbjct: 418 STRLADLKFGKGLHSNGIKS--GICIDLSVSNALIDMYAKCGEVGDSLKIFSSM-GTGDT 474

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVY 623
           + W++++ +C   G+   G +V   + + E V D A +
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTTQMRKSEVVPDMATF 512



 Score = 84.7 bits (208), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 54/187 (28%), Positives = 96/187 (51%), Gaps = 3/187 (1%)

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           +  +S+   + ++S+S+NL   R +H   I  G +S+   S  L+D YS       S  V
Sbjct: 2   QTRVSSPFISRALSSSSNLNELRRIHALVISLGLDSSDFFSGKLIDKYSHFREPASSLSV 61

Query: 475 FEKI-PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           F ++ P+ NV  + SI+  +S+NG+  EAL+    + +  + PDK TF  V+  C     
Sbjct: 62  FRRVSPAKNVYLWNSIIRAFSKNGLFPEALEFYGKLRESKVSPDKYTFPSVIKACAGLFD 121

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            + G LV+  +  + G ++D    + ++DM  R G+L +A ++  + P   D + W+SL+
Sbjct: 122 AEMGDLVYEQILDM-GFESDLFVGNALVDMYSRMGLLTRARQVFDEMP-VRDLVSWNSLI 179

Query: 594 RSCRVHG 600
                HG
Sbjct: 180 SGYSSHG 186


>gi|359488315|ref|XP_002278668.2| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Vitis vinifera]
          Length = 877

 Score =  320 bits (821), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 187/624 (29%), Positives = 329/624 (52%), Gaps = 8/624 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ + +  +D + K   L+ + + F  MP ++ V+++ +I+GC +    +  L L+ EM 
Sbjct: 208 DVVTGSALLDMYAKCKKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQ 267

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  S STF+SV   C+       G Q+H   L   FG ++ IG+  +D+YM+     
Sbjct: 268 KAGVGVSQSTFASVFRSCAGLSALRLGSQLHGHALKTDFGTDVVIGTATLDMYMKCNNLS 327

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ LP  NL ++N ++  +    +  E L M+  ++  G+  + +S     R C+
Sbjct: 328 DAQKLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACA 387

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +     EG Q+H   +K      NI VANA++D Y  CG+L+EA   F+ +   D +SWN
Sbjct: 388 VIKGDLEGLQVHGLSMK-SLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWN 446

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK- 341
           +I++ +         L LF  M      P   ++   L   +    +  G +IH  + K 
Sbjct: 447 AIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKS 506

Query: 342 -LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            LG D     V  AL DMY KC ++E +  + +    +++   N++++        ++A 
Sbjct: 507 RLGLDS---FVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQ 563

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           + F  M++ G+  D  T +T L   +   +  LG  + +H   IK   +S+  +S +L+D
Sbjct: 564 KTFSKMLEMGVDPDNFTYATILDTCANLVTVELG--KQIHAQIIKKELQSDAYISSTLVD 621

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+CG+++    +FEK P+ + V + +++ GY+++G+G EAL + E M    + P+  T
Sbjct: 622 MYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHAT 681

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL  C H G+V++G   F+SM S YG+D   +HYSC++D++GR+G + KA EL++  
Sbjct: 682 FLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVSKALELIEGM 741

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D ++W +LL  C++HGN  +  + A  +++LEP D A Y  +SN Y+  G +    
Sbjct: 742 PFEADAVIWRTLLSICKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYANAGMWNEVT 801

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
           ++R+      L ++ G S IE+ S
Sbjct: 802 KLRKMMRFNGLKKEPGCSWIEIKS 825



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 158/584 (27%), Positives = 287/584 (49%), Gaps = 17/584 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ +  S N  +  +   G +  A+KLFD MP RD+V++N LISG       ++ + ++ 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   G     +TF+ VL  CS+   +  GIQIH   + +GF  ++  GS L+D+Y +  
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVTGSALLDMYAKCK 223

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               ++  F  +PE+N  +W+ ++    +       L ++ +M+  GV  +  +F  + R
Sbjct: 224 KLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVFR 283

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L  G QLH H +K  +   ++ +  A +D Y  C +L +A+K F+ +P  ++ 
Sbjct: 284 SCAGLSALRLGSQLHGHALKTDF-GTDVVIGTATLDMYMKCNNLSDAQKLFNSLPNHNLQ 342

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQ---LCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           S+N+I+  YA  D   +AL +F  +Q   L     S+     F   A   G++  G Q+H
Sbjct: 343 SYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSG--AFRACAVIKGDLE-GLQVH 399

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G   K      ++ V +A+ DMYGKC  +  +  VFE    R     N+++ +   +GN 
Sbjct: 400 GLSMK-SLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNE 458

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           +  + +F +M+  G+  DE T  + LKA +   + N G    +H   IKS    +  V  
Sbjct: 459 EKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCG--MEIHNRIIKSRLGLDSFVGI 516

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D YS+CG +E + ++ +++    VV + +I++G+S      EA      M++ G+ P
Sbjct: 517 ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 576

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D  T+  +L  C +   V+ G+ +   +     + +D    S ++DM  + G +   + +
Sbjct: 577 DNFTYATILDTCANLVTVELGKQIHAQIIK-KELQSDAYISSTLVDMYSKCGNMQDFQLI 635

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL--MELEPV 618
            ++ P   D + W++++     HG   +G     I   M+LE V
Sbjct: 636 FEKAP-NRDFVTWNAMVCGYAQHG---LGEEALKIFEYMQLENV 675



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 147/593 (24%), Positives = 283/593 (47%), Gaps = 52/593 (8%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TFS +   CS+      G Q H R++   F   +++ + L+ +Y++      A  +FD +
Sbjct: 44  TFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLEFAFKVFDGM 103

Query: 172 PERNLATWNLML-------------RAFCELSRPD------------------EVLRMYN 200
           P+R+  +WN ML             + F  +   D                  +V+ ++ 
Sbjct: 104 PQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPERDVVSWNSLISGYLHNGDHRKVIDVFL 163

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M   G   +  +F  +++ CS       G Q+H   +K+G+ D ++   +AL+D Y+ C
Sbjct: 164 QMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGF-DCDVVTGSALLDMYAKC 222

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
             L  + + F  +P  + +SW++I++     D +   LELF  MQ      S  +F    
Sbjct: 223 KKLDCSIQFFHSMPEKNWVSWSAIIAGCVQNDDLRGGLELFKEMQKAGVGVSQSTFASVF 282

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
              +    +  G Q+HG+  K  F    V + +A  DMY KCN +  +  +F S P  +L
Sbjct: 283 RSCAGLSALRLGSQLHGHALKTDFGTDVV-IGTATLDMYMKCNNLSDAQKLFNSLPNHNL 341

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
           +  N+++     S    +A+ MF  +   G+GLDEV+LS   +A +V    +L   + +H
Sbjct: 342 QSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVSLSGAFRACAV-IKGDLEGLQ-VH 399

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             ++KS  +SNI V+ +++D Y +CG +  +  VFE++ S + V + +I+  + +NG   
Sbjct: 400 GLSMKSLCQSNICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEE 459

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSC 559
           + L +   M+Q G+ PD+ T+  VL  C     +  G  + N  +KS  G+D+       
Sbjct: 460 KTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVG--IA 517

Query: 560 MIDMLGRAGILDKAEE----LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           +IDM  + G+++KAE+    L +QT      + W++++    +       ++  + ++E+
Sbjct: 518 LIDMYSKCGMMEKAEKLHDRLAEQT-----VVSWNAIISGFSLQKQSEEAQKTFSKMLEM 572

Query: 616 --EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEVNS 664
             +P +F  Y+ + +  + +   E+  QI    + ++L  D  I  +L+++ S
Sbjct: 573 GVDPDNF-TYATILDTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYS 624



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 98/348 (28%), Positives = 185/348 (53%), Gaps = 7/348 (2%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR 89
           L + S CQ N    I  +N  +D + K G L  A  +F+EM +RD V++N +I+   +  
Sbjct: 401 LSMKSLCQSN----ICVANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNG 456

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
           + ++ L L+  M+  G++    T+ SVL  C+       G++IH R++    GL+ ++G 
Sbjct: 457 NEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRLGLDSFVGI 516

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
            L+D+Y + G   +A  L D L E+ + +WN ++  F    + +E  + ++KM   GV+P
Sbjct: 517 ALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDP 576

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +  ++  ++  C+  + ++ GKQ+H+ +IK   +  + ++++ LVD YS CG++ + +  
Sbjct: 577 DNFTYATILDTCANLVTVELGKQIHAQIIKKE-LQSDAYISSTLVDMYSKCGNMQDFQLI 635

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           F+  P  D ++WN++V  YA + L  +AL++F  MQL   +P+  +F+  L      G V
Sbjct: 636 FEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQLENVKPNHATFLAVLRACGHMGLV 695

Query: 330 YFG-KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
             G    H  ++  G D    H  S + D+ G+   +  ++ + E  P
Sbjct: 696 EKGLHYFHSMLSNYGLDPQLEHY-SCVVDIMGRSGQVSKALELIEGMP 742


>gi|225459793|ref|XP_002284799.1| PREDICTED: pentatricopeptide repeat-containing protein At2g33680
           [Vitis vinifera]
 gi|302141693|emb|CBI18896.3| unnamed protein product [Vitis vinifera]
          Length = 703

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 187/623 (30%), Positives = 334/623 (53%), Gaps = 6/623 (0%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF--RHPKQALYLYDEM 101
           +Y +N  ++ + K   L  AK +F+ +  +D+V++N +I+G  +         + L+  M
Sbjct: 40  VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM 99

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            +     +A TF+ V +  S       G   H   + +    ++++GS L+++Y + G +
Sbjct: 100 RAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLT 159

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD +PERN  +W  M+  +       E L ++  M+ E    N   F  ++   
Sbjct: 160 PEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL 219

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           ++  L++ GKQ+H   +K G + + + V NALV  Y+ CGSL +A ++F+     + I+W
Sbjct: 220 TLPELVNNGKQIHCIAVKNGLLSI-VSVGNALVTMYAKCGSLDDALQTFETSSDKNSITW 278

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +++++ YA       AL+LF  M L   RPS  +FV  +N  S  G  + GKQ+H Y+ K
Sbjct: 279 SAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLK 338

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LGF+   ++V +AL DMY KC+ I  +   F+      +    S++   + +G  +DA+ 
Sbjct: 339 LGFE-SQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALS 397

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           ++G M  EGI  +E+T+++ LKA S  A+   G  + +H   +K GF   + +  +L   
Sbjct: 398 LYGRMEMEGILPNELTMASVLKACSSLAALEQG--KQIHARTVKYGFGLEVPIGSALSTM 455

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG ++    VF ++P+ +V+ + ++++G S+NG G+EAL++ E M   G  PD VTF
Sbjct: 456 YAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTF 515

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L+ C+H G+V+ G   F  M   +G+D   +HY+CM+D+L RAG L +A E  +   
Sbjct: 516 VNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESAT 575

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
                 +W  +L +CR + N  +G      LMEL   + + Y  +S+ YS +G +E   +
Sbjct: 576 IDHGMCLWRIILGACRNYRNYELGAYAGEKLMELGSQESSAYVLLSSIYSALGRWEDVER 635

Query: 642 IRETALARKLTRDIGHSLIEVNS 664
           +R     R ++++ G S IE+ S
Sbjct: 636 VRRMMKLRGVSKEPGCSWIELKS 658



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 132/456 (28%), Positives = 226/456 (49%), Gaps = 7/456 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  ++ + K+G    A+K+FD MP R+ V++  +ISG    +   +AL L+  M 
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMR 201

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                E+   F+SVLS  +       G QIHC  +  G    + +G+ LV +Y + G   
Sbjct: 202 REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            AL  F+   ++N  TW+ M+  + +    D+ L++++ M   G+ P+  +F  ++  CS
Sbjct: 262 DALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                 EGKQ+H +++KLG+ +  I+V  ALVD Y+ C S+++A+K FD++   D++ W 
Sbjct: 322 DLGAAWEGKQVHDYLLKLGF-ESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWT 380

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S++  Y       DAL L+ RM++    P+  +    L   S    +  GKQIH    K 
Sbjct: 381 SMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKY 440

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF    V + SAL+ MY KC  ++    VF   P R +   N++++ L  +G  K+A+E+
Sbjct: 441 GFGL-EVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALEL 499

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSA--SANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           F  M  EG   D VT    L A S         G  R++     + G +  +     ++D
Sbjct: 500 FEEMQLEGTKPDYVTFVNILSACSHMGLVERGWGYFRMMF---DEFGMDPRVEHYACMVD 556

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
             SR G ++ + +  E     + +C   I+ G  RN
Sbjct: 557 ILSRAGKLKEAIEFTESATIDHGMCLWRIILGACRN 592



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 102/372 (27%), Positives = 192/372 (51%), Gaps = 15/372 (4%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +GK LH+ +IK       +++AN+LV+ Y+ C  L EAK  F+ I   DV+SWN I++
Sbjct: 22  LQKGKALHAQIIKSS--SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIIN 79

Query: 287 IYADYDLIFDA--LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
            Y+ +     +  +ELF RM+     P+  +F      AS   +   G+  H    K+  
Sbjct: 80  GYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMD- 138

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               V V S+L +MY K  +   +  VF++ P R+     ++++         +A+ +F 
Sbjct: 139 SCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFR 198

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  E  G +E   ++ L AL++    N G  + +HC A+K+G  S ++V  +L+  Y++
Sbjct: 199 LMRREEEGENEFVFTSVLSALTLPELVNNG--KQIHCIAVKNGLLSIVSVGNALVTMYAK 256

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG ++ + Q FE     N + +++++ GY+++G   +AL +   M   G+ P + TF+ V
Sbjct: 257 CGSLDDALQTFETSSDKNSITWSAMITGYAQSGDSDKALKLFSSMHLSGIRPSEFTFVGV 316

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR-AGILD--KAEELLQQTP 581
           +  C+  G   EG+ V + +  + G ++     + ++DM  + + I+D  K  + LQ+  
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKL-GFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEP- 374

Query: 582 GGGDCMMWSSLL 593
              D ++W+S++
Sbjct: 375 ---DIVLWTSMI 383



 Score = 47.8 bits (112), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 85/173 (49%), Gaps = 9/173 (5%)

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           L  + + +L   + LH   IKS   S + ++ SL++ Y++C  +  +  VFE+I + +VV
Sbjct: 14  LQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVV 72

Query: 485 CFTSIMNGYSRNGM--GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
            +  I+NGYS++G       +++ + M      P+  TF  V    +       G+L   
Sbjct: 73  SWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRL--- 129

Query: 543 SMKSVYGIDADRQHY--SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +      +D+ R  +  S +++M  +AG+  +A ++    P   + + W++++
Sbjct: 130 AHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP-ERNSVSWATMI 181


>gi|225444173|ref|XP_002268853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Vitis vinifera]
          Length = 853

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 192/665 (28%), Positives = 357/665 (53%), Gaps = 5/665 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ-PNPQLNIYSSNRTIDDFVKSGH 59
           ML    LP   T   +   C  +  ++   ++    Q    +L+++  +  I  + ++G 
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A+ LFD MP++D V +N++++G  K      A  ++ EM       ++ TF+ VLSV
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSV 257

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G Q+H  V+S G  ++  + + L+ +Y + G    A  LFD +P+ +L TW
Sbjct: 258 CASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTW 317

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + +    DE   ++++M +  ++P+ ++F   +   S G  L +GK++H ++I+
Sbjct: 318 NGMISGYVQNGFMDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIR 377

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G V +++F+ +AL+D Y  C  +  A+K FD     D++   +++S Y    +  +ALE
Sbjct: 378 NG-VSLDVFLKSALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALE 436

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  +   R R +  +    L   +    +  GK++HG++ K G   GS +V SA+ DMY
Sbjct: 437 IFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG-GSCYVGSAIMDMY 495

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  ++ +   F     +   C NS++TS   +G  ++A+++F  M   G   D V++S
Sbjct: 496 AKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSIS 555

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A +   + + G  + +H   ++  F S++    +L+D YS+CG+++L+ +VF+ + 
Sbjct: 556 AALSACANLPALHYG--KEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDTME 613

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             N V + SI+  Y  +G  +++L++   M+  G+ PD VTFL +++ C H+G V EG  
Sbjct: 614 EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIH 673

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F  M    GI A  +HY+CM+D+ GRAG L++A  ++   P   D  +W +LL +CR+H
Sbjct: 674 YFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGTLLGACRLH 733

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
           GN  +    +  L +L+P +   Y  +SN ++  G++E  ++IR     R + +  G S 
Sbjct: 734 GNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGVQKVPGCSW 793

Query: 660 IEVNS 664
           I+VN+
Sbjct: 794 IDVNN 798



 Score =  229 bits (584), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 150/547 (27%), Positives = 271/547 (49%), Gaps = 6/547 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +V  G    AK +F ++       +N +I G         AL  Y +M+  G      TF
Sbjct: 91  YVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTF 150

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             V+  C        G  +H ++  +GF L++++GS L+  Y   G    A  LFD +P 
Sbjct: 151 PYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPS 210

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++   WN+ML  + +    D    ++ +M+     PN ++F  ++  C+  ++++ G QL
Sbjct: 211 KDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  V+  G ++++  VAN L+  Y+ CG L +A++ FD +P  D+++WN ++S Y     
Sbjct: 271 HGLVVSSG-LEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGF 329

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
           + +A  LF  M   R +P   +F  FL   S    +  GK+IH Y+ + G     V ++S
Sbjct: 330 MDEASCLFHEMISARMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSL-DVFLKS 388

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL D+Y KC  +E +  +F+      +  C ++++  + +G   +A+E+F +++ E +  
Sbjct: 389 ALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRA 448

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           + VTL++ L A +  A+  LG  + LH   +K+G   +  V  ++MD Y++CG ++L+HQ
Sbjct: 449 NSVTLASVLPACAGLAALTLG--KELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAHQ 506

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
            F  I   + VC+ S++   S+NG   EA+D+   M   G   D V+    L+ C +   
Sbjct: 507 TFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 566

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +  G+ +   M       +D    S +IDM  + G LD A  +        + + W+S++
Sbjct: 567 LHYGKEIHAFMMRG-AFRSDLFAESALIDMYSKCGNLDLACRVFDTMEEKNE-VSWNSII 624

Query: 594 RSCRVHG 600
            +   HG
Sbjct: 625 AAYGNHG 631



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 132/506 (26%), Positives = 246/506 (48%), Gaps = 24/506 (4%)

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           H     A    S+L  C++    ++G Q H ++L  G G N  +G+ L+ +Y+  G  + 
Sbjct: 40  HNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLD 99

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A ++F +L       WN M+R F  + + D  L  Y KM   G  P+  +F Y+++ C  
Sbjct: 100 AKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGG 159

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +  G+ +H  +  +G+ ++++FV ++L+ FYS  G + +A+  FD +P  D + WN 
Sbjct: 160 LNSVALGRVVHDKIQFMGF-ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNV 218

Query: 284 IVSIY---ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           +++ Y    D+D   +A  +F  M+     P+  +F   L+  +    + FG Q+HG V 
Sbjct: 219 MLNGYVKNGDWD---NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVV 275

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
             G +  S  V + L  MY KC  +  +  +F+  P   L   N +++  + +G + +A 
Sbjct: 276 SSGLEMDSP-VANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEAS 334

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M+   +  D +T S+ L  LS  A+   G  + +HC  I++G   ++ +  +L+D
Sbjct: 335 CLFHEMISARMKPDSITFSSFLPLLSEGATLRQG--KEIHCYIIRNGVSLDVFLKSALID 392

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +C  +E++ ++F++    ++V  T++++GY  NGM   AL++   ++Q  +  + VT
Sbjct: 393 IYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVT 452

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH------YSCMIDMLGRAGILDKAE 574
              VL  C        G       K ++G      H       S ++DM  + G LD A 
Sbjct: 453 LASVLPAC-------AGLAALTLGKELHGHILKNGHGGSCYVGSAIMDMYAKCGRLDLAH 505

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +         D + W+S++ SC  +G
Sbjct: 506 QTFIGIS-DKDAVCWNSMITSCSQNG 530


>gi|255559863|ref|XP_002520950.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539787|gb|EEF41367.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 835

 Score =  320 bits (820), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 191/624 (30%), Positives = 339/624 (54%), Gaps = 10/624 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++  N  +  + K   +N A+KLFD M  R D+V++N +IS         +AL L+ EM+
Sbjct: 93  VFVVNSLVALYAKCNDINGARKLFDRMYVRNDVVSWNSIISAYSGNGMCTEALCLFSEML 152

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +  TF++ L  C ++ F   G+QIH  +L  G  L++Y+ + LV +Y+R G   
Sbjct: 153 KAGVVTNTYTFAAALQACEDSSFIKLGMQIHAAILKSGRVLDVYVANALVAMYVRFGKMP 212

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF-CYMVRGC 221
            A  +F  L  +++ TWN ML  F +     E L  +  ++   ++P+ +S    +V   
Sbjct: 213 EAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDLQNADLKPDQVSIISIIVASG 272

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
            +G LL+ GK++H++ IK G+ D NI V N L+D Y+ C  +    ++FD +   D+ISW
Sbjct: 273 RLGYLLN-GKEIHAYAIKNGF-DSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISW 330

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG-KQIHGYVT 340
            +  + YA       ALEL  ++Q+        + +  +  A R  N     K+IHGY  
Sbjct: 331 TTAAAGYAQNKCYLQALELLRQLQM-EGMDVDATMIGSILLACRGLNCLGKIKEIHGYTI 389

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           + G     +  Q+ + D+YG+C +I+ +V +FES   + +    S+++  +H+G    A+
Sbjct: 390 RGGLSDPVL--QNTIIDVYGECGIIDYAVRIFESIECKDVVSWTSMISCYVHNGLANKAL 447

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           E+F  M + G+  D VTL + L A  V + + L   + +H   I+ GF    ++S +L+D
Sbjct: 448 EVFSSMKETGLEPDYVTLVSILSA--VCSLSTLKKGKEIHGFIIRKGFILEGSISNTLVD 505

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y+RCG +E ++++F    + N++ +T++++ Y  +G G  A+++   M    +IPD +T
Sbjct: 506 MYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGEAAVELFMRMKDEKIIPDHIT 565

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL +L  C+HSG+V EG+     MK  Y ++   +HY+C++D+LGR   L++A ++++  
Sbjct: 566 FLALLYACSHSGLVNEGKSFLEIMKCEYQLEPWPEHYTCLVDLLGRRNCLEEAYQIVKSM 625

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
                  +W +LL +CR+H N+ IG   A  L+EL+  +   Y  VSN ++  G ++   
Sbjct: 626 QNEPTPEVWCALLGACRIHSNKEIGEVAAEKLLELDLDNPGNYVLVSNVFAANGRWKDVE 685

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
           ++R       LT++ G S IEV +
Sbjct: 686 EVRMRMKGSGLTKNPGCSWIEVGN 709



 Score =  202 bits (515), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 144/548 (26%), Positives = 267/548 (48%), Gaps = 8/548 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A+ +FD+M  R + T+N ++ G         AL +Y EM   G+   + TF
Sbjct: 2   YGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYTF 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             +L  C        G +IH   +  G    +++ + LV LY +      A  LFD +  
Sbjct: 62  PVLLKACGIVEDLFCGAEIHGLAIKYGCDSFVFVVNSLVALYAKCNDINGARKLFDRMYV 121

Query: 174 RN-LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           RN + +WN ++ A+       E L ++++M   GV  N  +F   ++ C     +  G Q
Sbjct: 122 RNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLGMQ 181

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H+ ++K G V ++++VANALV  Y   G + EA   F  +   D+++WNS+++ +    
Sbjct: 182 IHAAILKSGRV-LDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNG 240

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L  +ALE F+ +Q    +P   S +  +  + R G +  GK+IH Y  K GFD  ++ V 
Sbjct: 241 LYSEALEFFYDLQNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFD-SNILVG 299

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           + L DMY KC  +      F+    + L    +       +     A+E+   +  EG+ 
Sbjct: 300 NTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMD 359

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           +D   + + L  L+      LG  + +H   I+ G  S+  +  +++D Y  CG I+ + 
Sbjct: 360 VDATMIGSIL--LACRGLNCLGKIKEIHGYTIRGGL-SDPVLQNTIIDVYGECGIIDYAV 416

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           ++FE I   +VV +TS+++ Y  NG+  +AL++   M + GL PD VT + +L+      
Sbjct: 417 RIFESIECKDVVSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLS 476

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +K+G+ +   +    G   +    + ++DM  R G ++ A ++   T    + ++W+++
Sbjct: 477 TLKKGKEIHGFIIR-KGFILEGSISNTLVDMYARCGSVEDAYKIFTCTK-NRNLILWTAM 534

Query: 593 LRSCRVHG 600
           + +  +HG
Sbjct: 535 ISAYGMHG 542



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/452 (28%), Positives = 228/452 (50%), Gaps = 19/452 (4%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G  + A  +FD++ ER++ TWN M+  +         L MY +M+  GV  +  +
Sbjct: 1   MYGKCGSVLDAEMIFDKMSERSIFTWNAMMGGYVSNGEALGALEMYREMRHLGVSFDSYT 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  +++ C I   L  G ++H   IK G  D  +FV N+LV  Y+ C  +  A+K FD +
Sbjct: 61  FPVLLKACGIVEDLFCGAEIHGLAIKYG-CDSFVFVVNSLVALYAKCNDINGARKLFDRM 119

Query: 274 PV-DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
            V +DV+SWNSI+S Y+   +  +AL LF  M       +  +F   L     +  +  G
Sbjct: 120 YVRNDVVSWNSIISAYSGNGMCTEALCLFSEMLKAGVVTNTYTFAAALQACEDSSFIKLG 179

Query: 333 KQIHGYVTKLG--FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            QIH  + K G   D   V+V +AL  MY +   +  +  +F +  G+ +   NS++T  
Sbjct: 180 MQIHAAILKSGRVLD---VYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGF 236

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSG 447
           + +G   +A+E F  + +  +  D+V++ +      + AS  LG   + + +H  AIK+G
Sbjct: 237 IQNGLYSEALEFFYDLQNADLKPDQVSIISI-----IVASGRLGYLLNGKEIHAYAIKNG 291

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           F+SNI V  +L+D Y++C  +    + F+ +   +++ +T+   GY++N    +AL++L 
Sbjct: 292 FDSNILVGNTLIDMYAKCCCMSYGGRAFDLMAHKDLISWTTAAAGYAQNKCYLQALELLR 351

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            +   G+  D      +L  C   G+   G++      ++ G  +D    + +ID+ G  
Sbjct: 352 QLQMEGMDVDATMIGSILLACR--GLNCLGKIKEIHGYTIRGGLSDPVLQNTIIDVYGEC 409

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           GI+D A  + +      D + W+S++ SC VH
Sbjct: 410 GIIDYAVRIFESIE-CKDVVSWTSMI-SCYVH 439



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 114/451 (25%), Positives = 211/451 (46%), Gaps = 15/451 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++Y +N  +  +V+ G +  A  +F  +  +D+VT+N +++G  +     +AL  + ++
Sbjct: 193 LDVYVANALVAMYVRFGKMPEAAVIFGNLEGKDIVTWNSMLTGFIQNGLYSEALEFFYDL 252

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR---M 158
            +  +K    +  S++      G+   G +IH   +  GF  N+ +G+ L+D+Y +   M
Sbjct: 253 QNADLKPDQVSIISIIVASGRLGYLLNGKEIHAYAIKNGFDSNILVGNTLIDMYAKCCCM 312

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
               RA DL   +  ++L +W      + +     + L +  +++ EG++ +      ++
Sbjct: 313 SYGGRAFDL---MAHKDLISWTTAAAGYAQNKCYLQALELLRQLQMEGMDVDATMIGSIL 369

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C     L + K++H + I+ G  D    + N ++D Y  CG +  A + F+ I   DV
Sbjct: 370 LACRGLNCLGKIKEIHGYTIRGGLSDP--VLQNTIIDVYGECGIIDYAVRIFESIECKDV 427

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW S++S Y    L   ALE+F  M+     P   + V  L+       +  GK+IHG+
Sbjct: 428 VSWTSMISCYVHNGLANKALEVFSSMKETGLEPDYVTLVSILSAVCSLSTLKKGKEIHGF 487

Query: 339 VTKLGFD-HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           + + GF   GS  + + L DMY +C  +E +  +F     R+L    +++++    G  +
Sbjct: 488 IIRKGFILEGS--ISNTLVDMYARCGSVEDAYKIFTCTKNRNLILWTAMISAYGMHGYGE 545

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            AVE+F  M DE I  D +T    L A S S   N G    L     +   E        
Sbjct: 546 AAVELFMRMKDEKIIPDHITFLALLYACSHSGLVNEGK-SFLEIMKCEYQLEPWPEHYTC 604

Query: 458 LMDAYSRCGHIELSHQVFEKI---PSPNVVC 485
           L+D   R   +E ++Q+ + +   P+P V C
Sbjct: 605 LVDLLGRRNCLEEAYQIVKSMQNEPTPEVWC 635


>gi|302773622|ref|XP_002970228.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
 gi|300161744|gb|EFJ28358.1| hypothetical protein SELMODRAFT_93321 [Selaginella moellendorffii]
          Length = 936

 Score =  320 bits (819), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 183/626 (29%), Positives = 336/626 (53%), Gaps = 5/626 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++ +   ++ + K G L  A+K+FD MP R + T+N +IS         +A +++  M
Sbjct: 193 LDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRM 252

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G +    TF S+L  C N      G  +   +    F L+L++G+ L+ +Y R    
Sbjct: 253 QQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFELDLFVGTALITMYARCRSP 312

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F  + + NL TW+ ++ AF +     E LR +  M+ EG+ PN ++F  ++ G 
Sbjct: 313 EDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGF 372

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L+E  ++H  + + G +D    + NALV+ Y  C S  +A+  FD + + ++ISW
Sbjct: 373 TTPSGLEELSRIHLLITEHG-LDDTTTMRNALVNVYGRCESPDDARTVFDQLELPNLISW 431

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NS++ IY   +   DAL+LF  MQ    +P   +F+  L   +   +    K +H  V +
Sbjct: 432 NSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGSHGRTRKLVHQCVEE 491

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G   GS  VQ++L +MY K   ++ +  + +    + +   N L+      G  ++A+E
Sbjct: 492 SGLG-GSPLVQTSLVNMYAKAGELDVAEVILQEMDEQQITAWNVLINGYALHGRSREALE 550

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +  +  E I +D+VT  + L A + S S  L   +++H  A++ G +S++ V  +L + 
Sbjct: 551 AYQKLQLEAIPVDKVTFISVLNACTSSTS--LAEGKMIHSNAVECGLDSDVIVKNALTNM 608

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+CG +E + ++F+ +P  + V +  ++  Y+++G   E L ++  M Q G+  + +TF
Sbjct: 609 YSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNGITF 668

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL+ C+H+G++ EG   F+S+    GI+   +HY C++D+LGRAG L +AE+ + + P
Sbjct: 669 VSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYISKMP 728

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
                + W+SLL +CRV  +   G+  A  L+EL+P + +    +SN YSE G+++ + +
Sbjct: 729 LEPGIVTWASLLGACRVQKDLDRGKLAAGKLLELDPGNSSASVVLSNIYSERGDWKNAAK 788

Query: 642 IRETALARKLTRDIGHSLIEV-NSCH 666
           +R    +R++ +  G S I+V N  H
Sbjct: 789 LRRAMASRRVKKVPGISSIQVKNKVH 814



 Score =  222 bits (566), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 151/577 (26%), Positives = 285/577 (49%), Gaps = 8/577 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G L  A   F ++ AR++V++N++IS    ++  ++AL L+  M+  G+  +A T 
Sbjct: 2   YSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAITL 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            +VL+ C +     +GI +H   L  GF  N  + + L+++Y + G  + A  +F+E+ E
Sbjct: 62  VAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGTLLDAQSVFEEMAE 121

Query: 174 RNLATWNLMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +N+ TWN ML  +  +       + ++ +M  EGV+ N ++F  ++        L +GK 
Sbjct: 122 KNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKGKF 181

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +HS  ++     +++FV  ALV+ Y+ CGSL +A+K FD +P   V +WNS++S Y+  +
Sbjct: 182 IHS-CVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISE 240

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              +A  +F RMQ   +R    +F+  L+       +  GK +   +++  F+   + V 
Sbjct: 241 RSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVRESISETSFEL-DLFVG 299

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL  MY +C   E +  VF      +L   ++++T+    G+  +A+  F  M  EGI 
Sbjct: 300 TALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQEGIL 359

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            + VT  + L   +    + L     +H    + G +    +  +L++ Y RC   + + 
Sbjct: 360 PNRVTFISLLNGFTT--PSGLEELSRIHLLITEHGLDDTTTMRNALVNVYGRCESPDDAR 417

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF+++  PN++ + S++  Y +     +AL +   M Q+G+ PD+V F+ +L  C    
Sbjct: 418 TVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRVNFMTILGACTIGS 477

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
             +  +LV   ++   G+       + +++M  +AG LD AE +LQ+         W+ L
Sbjct: 478 HGRTRKLVHQCVEE-SGLGGSPLVQTSLVNMYAKAGELDVAEVILQEMD-EQQITAWNVL 535

Query: 593 LRSCRVHGNEIIGRRVANIL-MELEPVDFAVYSQVSN 628
           +    +HG           L +E  PVD   +  V N
Sbjct: 536 INGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLN 572



 Score =  219 bits (557), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 149/606 (24%), Positives = 300/606 (49%), Gaps = 16/606 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGH 59
           ML   + P   T+  +  +C S   L   +L+ +         N   +   ++ + K G 
Sbjct: 49  MLLEGVAPNAITLVAVLNSCGSFRELRDGILVHALSLERGFFQNTLVATALLNMYGKCGT 108

Query: 60  LNSAKKLFDEMPARDMVTYNLL-----ISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           L  A+ +F+EM  +++VT+N +     + GC      K A+ L+  M+  G+K +  TF 
Sbjct: 109 LLDAQSVFEEMAEKNVVTWNAMLGVYSLQGCCW----KLAVELFTRMLLEGVKANVITFL 164

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           +VL+   +     +G  IH  V      L++++ + LV+ Y + G    A  +FD +P R
Sbjct: 165 NVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCR 224

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           ++ TWN M+ A+    R  E   ++ +M+ EG   + ++F  ++  C     L  GK + 
Sbjct: 225 SVGTWNSMISAYSISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHGKHVR 284

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
             + +  + ++++FV  AL+  Y+ C S  +A + F  +   ++I+W++I++ +AD+   
Sbjct: 285 ESISETSF-ELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHC 343

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +AL  F  MQ     P+  +F+  LN  +    +    +IH  +T+ G D  +  +++A
Sbjct: 344 GEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTT-MRNA 402

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L ++YG+C   + +  VF+     +L   NS++   +      DA+++F  M  +GI  D
Sbjct: 403 LVNVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPD 462

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
            V   T L A ++ +     + +L+H C  +SG   +  V  SL++ Y++ G ++++  +
Sbjct: 463 RVNFMTILGACTIGSHGR--TRKLVHQCVEESGLGGSPLVQTSLVNMYAKAGELDVAEVI 520

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
            +++    +  +  ++NGY+ +G  REAL+  + +    +  DKVTF+ VL  C  S  +
Sbjct: 521 LQEMDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSL 580

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            EG+++ ++     G+D+D    + + +M  + G ++ A  +    P     + W+ +L+
Sbjct: 581 AEGKMIHSNAVEC-GLDSDVIVKNALTNMYSKCGSMENARRIFDSMP-IRSAVSWNGMLQ 638

Query: 595 SCRVHG 600
           +   HG
Sbjct: 639 AYAQHG 644



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 115/428 (26%), Positives = 219/428 (51%), Gaps = 8/428 (1%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y R G    A+  F ++  RN+ +WN+M+ A+       E L +++ M  EGV PN ++
Sbjct: 1   MYSRCGSLGDAVAAFGKIRARNVVSWNVMISAYSSYKSFQEALALFHAMLLEGVAPNAIT 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++  C     L +G  +H+  ++ G+   N  VA AL++ Y  CG+L++A+  F+ +
Sbjct: 61  LVAVLNSCGSFRELRDGILVHALSLERGFFQ-NTLVATALLNMYGKCGTLLDAQSVFEEM 119

Query: 274 PVDDVISWNSIVSIYADYDLIFD-ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
              +V++WN+++ +Y+     +  A+ELF RM L   + ++ +F+  LN       +  G
Sbjct: 120 AEKNVVTWNAMLGVYSLQGCCWKLAVELFTRMLLEGVKANVITFLNVLNSVVDPDALRKG 179

Query: 333 KQIHGYVTKLGFDHG-SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           K IH  V +   +H   V V +AL + Y KC  +  +  VF+  P RS+   NS++++  
Sbjct: 180 KFIHSCVRE--SEHSLDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYS 237

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            S    +A  +F  M  EG   D VT  + L A     +   G  + +     ++ FE +
Sbjct: 238 ISERSGEAFFIFQRMQQEGERCDRVTFLSILDACVNPETLQHG--KHVRESISETSFELD 295

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + V  +L+  Y+RC   E + QVF ++   N++ +++I+  ++ +G   EAL    +M Q
Sbjct: 296 LFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCGEALRYFRMMQQ 355

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G++P++VTF+ +L G      ++E   + + + + +G+D      + ++++ GR    D
Sbjct: 356 EGILPNRVTFISLLNGFTTPSGLEELSRI-HLLITEHGLDDTTTMRNALVNVYGRCESPD 414

Query: 572 KAEELLQQ 579
            A  +  Q
Sbjct: 415 DARTVFDQ 422



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 112/459 (24%), Positives = 221/459 (48%), Gaps = 4/459 (0%)

Query: 33  DSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK 92
           +S  + + +L+++     I  + +      A ++F  M   +++T++ +I+      H  
Sbjct: 285 ESISETSFELDLFVGTALITMYARCRSPEDAAQVFGRMKQTNLITWSAIITAFADHGHCG 344

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +AL  +  M   GI  +  TF S+L+  +      E  +IH  +   G      + + LV
Sbjct: 345 EALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLITEHGLDDTTTMRNALV 404

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           ++Y R      A  +FD+L   NL +WN M+  + +  R D+ L+++  M+ +G++P+ +
Sbjct: 405 NVYGRCESPDDARTVFDQLELPNLISWNSMIGIYVQCERHDDALQLFRTMQQQGIQPDRV 464

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +F  ++  C+IG      K +H  V + G +  +  V  +LV+ Y+  G L  A+     
Sbjct: 465 NFMTILGACTIGSHGRTRKLVHQCVEESG-LGGSPLVQTSLVNMYAKAGELDVAEVILQE 523

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +    + +WN +++ YA +    +ALE + ++QL        +F+  LN  + + ++  G
Sbjct: 524 MDEQQITAWNVLINGYALHGRSREALEAYQKLQLEAIPVDKVTFISVLNACTSSTSLAEG 583

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           K IH    + G D   V V++ALT+MY KC  +E++  +F+S P RS    N ++ +   
Sbjct: 584 KMIHSNAVECGLD-SDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQ 642

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
            G  ++ +++   M  EG+ L+ +T  + L + S +     G C+  H      G E   
Sbjct: 643 HGESEEVLKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEG-CQYFHSLGHDRGIEVKT 701

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
                L+D   R G ++ + +   K+P  P +V + S++
Sbjct: 702 EHYGCLVDLLGRAGKLQEAEKYISKMPLEPGIVTWASLL 740


>gi|356528519|ref|XP_003532850.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Glycine max]
          Length = 849

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 189/658 (28%), Positives = 349/658 (53%), Gaps = 6/658 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P    + ++   CT +  LS +L L  +      + ++Y     ID + K G+++ A+ +
Sbjct: 152 PNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRGYVDEARLI 211

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD +  +  VT+  +I+G  K    + +L L+++M    +       SSVLS CS   F 
Sbjct: 212 FDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLSACSMLEFL 271

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G QIH  VL  GF +++ + + ++D Y++         LF+ L ++++ +W  M+   
Sbjct: 272 EGGKQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVVSWTTMIAGC 331

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            + S   + + ++ +M  +G +P+      ++  C     L +G+Q+H++ IK+  +D +
Sbjct: 332 MQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYAIKVN-IDND 390

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
            FV N L+D Y+ C SL  A+K FD +   +V+S+N+++  Y+  D + +AL+LF  M+L
Sbjct: 391 DFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEALDLFREMRL 450

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
               P++ +FV  L  +S    +    QIH  + K G    S    SAL D+Y KC+ + 
Sbjct: 451 SLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSF-AGSALIDVYSKCSCVG 509

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  VFE    R +   N++ +        +++++++  +    +  +E T +  + A S
Sbjct: 510 DARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNEFTFAAVIAAAS 569

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
             AS   G  +  H   IK G + +  V+ SL+D Y++CG IE SH+ F      ++ C+
Sbjct: 570 NIASLRHG--QQFHNQVIKMGLDDDPFVTNSLVDMYAKCGSIEESHKAFSSTNQRDIACW 627

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            S+++ Y+++G   +AL++ E MI  G+ P+ VTF+ +L+ C+H+G++  G   F SM S
Sbjct: 628 NSMISTYAQHGDAAKALEVFERMIMEGVKPNYVTFVGLLSACSHAGLLDLGFHHFESM-S 686

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            +GI+    HY+CM+ +LGRAG + +A+E +++ P     ++W SLL +CRV G+  +G 
Sbjct: 687 KFGIEPGIDHYACMVSLLGRAGKIYEAKEFVKKMPIKPAAVVWRSLLSACRVSGHVELGT 746

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             A + +  +P D   Y  +SN ++  G +     +RE     ++ ++ G S IEVN+
Sbjct: 747 YAAEMAISCDPADSGSYILLSNIFASKGMWASVRMVREKMDMSRVVKEPGWSWIEVNN 804



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 146/563 (25%), Positives = 286/563 (50%), Gaps = 9/563 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +++  N  +  + K    + A+KLFD MP R++VT++ ++S   +  +  +AL L+  
Sbjct: 84  QHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQHGYSVEALLLFCR 143

Query: 101 -MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M S   K +    +SV+  C+  G  ++ +Q+H  V+  GF  ++Y+G+ L+D Y + G
Sbjct: 144 FMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQDVYVGTSLIDFYAKRG 203

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD L  +   TW  ++  + +L R +  L+++N+M+   V P+      ++ 
Sbjct: 204 YVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGDVYPDRYVISSVLS 263

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS+   L+ GKQ+H +V++ G+ D+++ V N ++DFY  C  +   +K F+ +   DV+
Sbjct: 264 ACSMLEFLEGGKQIHGYVLRRGF-DMDVSVVNGIIDFYLKCHKVKTGRKLFNRLVDKDVV 322

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW ++++         DA++LF  M     +P        LN       +  G+Q+H Y 
Sbjct: 323 SWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCGSLQALQKGRQVHAYA 382

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K+  D+    V++ L DMY KC+ + ++  VF+     ++   N+++        + +A
Sbjct: 383 IKVNIDNDDF-VKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNAMIEGYSRQDKLVEA 441

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL-LHCCAIKSGFESNIAVSCSL 458
           +++F  M    + L   TL T +  L +S+S  L      +HC  IK G   +     +L
Sbjct: 442 LDLFREM---RLSLSPPTLLTFVSLLGLSSSLFLLELSSQIHCLIIKFGVSLDSFAGSAL 498

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D YS+C  +  +  VFE+I   ++V + ++ +GYS+     E+L + + +    L P++
Sbjct: 499 IDVYSKCSCVGDARLVFEEIYDRDIVVWNAMFSGYSQQLENEESLKLYKDLQMSRLKPNE 558

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            TF  V+A  ++   ++ GQ   N +  + G+D D    + ++DM  + G ++++ +   
Sbjct: 559 FTFAAVIAAASNIASLRHGQQFHNQVIKM-GLDDDPFVTNSLVDMYAKCGSIEESHKAFS 617

Query: 579 QTPGGGDCMMWSSLLRSCRVHGN 601
            T    D   W+S++ +   HG+
Sbjct: 618 ST-NQRDIACWNSMISTYAQHGD 639



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 200/394 (50%), Gaps = 6/394 (1%)

Query: 131 QIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           +IH  ++ LGF   ++++ + L+  Y +M     A  LFD +P RNL TW+ M+  + + 
Sbjct: 72  KIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQH 131

Query: 190 SRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
               E L ++ + M++   +PN      +VR C+    L +  QLH  V+K G+V  +++
Sbjct: 132 GYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQ-DVY 190

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V  +L+DFY+  G + EA+  FD + V   ++W +I++ YA       +L+LF +M+   
Sbjct: 191 VGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREGD 250

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
             P        L+  S    +  GKQIHGYV + GFD   V V + + D Y KC+ +++ 
Sbjct: 251 VYPDRYVISSVLSACSMLEFLEGGKQIHGYVLRRGFDM-DVSVVNGIIDFYLKCHKVKTG 309

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F     + +    +++   + +    DA+++F  MV +G   D    ++ L   S  
Sbjct: 310 RKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLN--SCG 367

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           +   L   R +H  AIK   +++  V   L+D Y++C  +  + +VF+ + + NVV + +
Sbjct: 368 SLQALQKGRQVHAYAIKVNIDNDDFVKNGLIDMYAKCDSLTNARKVFDLVAAINVVSYNA 427

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++ GYSR     EALD+   M      P  +TF+
Sbjct: 428 MIEGYSRQDKLVEALDLFREMRLSLSPPTLLTFV 461



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 86/348 (24%), Positives = 179/348 (51%), Gaps = 5/348 (1%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++H+H++ LG+   ++F+ N L+  YS      +A+K FD +P  ++++W+S+VS+Y  
Sbjct: 71  KKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSMYTQ 130

Query: 291 YDLIFDALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           +    +AL LF R M+ C ++P+       +   ++ GN+    Q+HG+V K GF    V
Sbjct: 131 HGYSVEALLLFCRFMRSCSEKPNEYILASVVRACTQLGNLSQALQLHGFVVKGGFVQ-DV 189

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
           +V ++L D Y K   ++ +  +F+    ++     +++      G  + ++++F  M + 
Sbjct: 190 YVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQMREG 249

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  D   +S+ L A S+      G  + +H   ++ GF+ +++V   ++D Y +C  ++
Sbjct: 250 DVYPDRYVISSVLSACSMLEFLEGG--KQIHGYVLRRGFDMDVSVVNGIIDFYLKCHKVK 307

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
              ++F ++   +VV +T+++ G  +N    +A+D+   M+++G  PD      VL  C 
Sbjct: 308 TGRKLFNRLVDKDVVSWTTMIAGCMQNSFHGDAMDLFVEMVRKGWKPDAFGCTSVLNSCG 367

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
               +++G+ V      V  ID D    + +IDM  +   L  A ++ 
Sbjct: 368 SLQALQKGRQVHAYAIKV-NIDNDDFVKNGLIDMYAKCDSLTNARKVF 414



 Score = 89.4 bits (220), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 61/268 (22%), Positives = 128/268 (47%), Gaps = 5/268 (1%)

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
           ++ K+IH ++  LGF    V + + L   Y K N+   +  +F++ P R+L   +S+++ 
Sbjct: 68  HYYKKIHAHIVVLGFHQHDVFLVNTLLHAYSKMNLQSDAQKLFDTMPHRNLVTWSSMVSM 127

Query: 390 LLHSGNIKDAVEMF-GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
               G   +A+ +F  FM       +E  L++ ++A   +   NL     LH   +K GF
Sbjct: 128 YTQHGYSVEALLLFCRFMRSCSEKPNEYILASVVRA--CTQLGNLSQALQLHGFVVKGGF 185

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             ++ V  SL+D Y++ G+++ +  +F+ +     V +T+I+ GY++ G    +L +   
Sbjct: 186 VQDVYVGTSLIDFYAKRGYVDEARLIFDGLKVKTTVTWTAIIAGYAKLGRSEVSLKLFNQ 245

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M +  + PD+     VL+ C+    ++ G+ +   +    G D D    + +ID   +  
Sbjct: 246 MREGDVYPDRYVISSVLSACSMLEFLEGGKQIHGYVLR-RGFDMDVSVVNGIIDFYLKCH 304

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSC 596
            +    +L  +     D + W++++  C
Sbjct: 305 KVKTGRKLFNRLV-DKDVVSWTTMIAGC 331


>gi|302766259|ref|XP_002966550.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
 gi|300165970|gb|EFJ32577.1| hypothetical protein SELMODRAFT_399 [Selaginella moellendorffii]
          Length = 732

 Score =  319 bits (817), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 188/585 (32%), Positives = 321/585 (54%), Gaps = 9/585 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +D + K+G ++ A  +  EMP RD++++N++ISG  +    K+ L     M   G+ 
Sbjct: 155 NALVDMYCKTGDVDEADLVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLS 214

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  T++++L+ CS+     EG  IH  V+ +G   +  + S L+ +Y + G        
Sbjct: 215 PTKVTYATLLNACSSGEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRS 274

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
             E+ ERN   WN ++ A+   S   + LR + +M+ +GV+ + ++F  M+  CS    L
Sbjct: 275 SCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLQGVKADAVTFVLMLGTCSSPAHL 334

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +G  LH  + +LG+   +I V N+L   Y+ CGSL  A+K F+ +P  + +SWNS++S 
Sbjct: 335 AQGILLHDWISQLGFE--SIIVHNSLTAMYAKCGSLDAARKMFEGMPSRNSVSWNSLISA 392

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
              +    DA + F RM+L   RP   + +  L+  ++  N   G  IH  V + GFD  
Sbjct: 393 AIQHGCYADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVESGFDK- 451

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
              V +AL  MY K    E++  VF++   R+    N+++ + +  G  +DAVEMF  M 
Sbjct: 452 RTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILAAYVEKGLNRDAVEMFWKM- 510

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI--AVSCSLMDAYSRC 465
              +  D+VT    L A S   +  L   +L+H   +  GF + +    + +L++ Y +C
Sbjct: 511 --DVARDKVTYVAALDACS-GLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNMYGKC 567

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ + ++F+++   +VV +TS++  Y+++    +AL ++++M Q G+  D V FL +L
Sbjct: 568 GSLQEARKIFDEMLHRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQDGVKVDDVVFLSIL 627

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           +GC+HSG+++EG   F SM   YGI    +HY+C+ID+LGRAG LD AE+L+ + P   D
Sbjct: 628 SGCDHSGLLEEGCKYFVSMIDDYGISPRLEHYNCIIDVLGRAGHLDLAEKLVDRLPSRSD 687

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
             +W +LL +CR+HGN   G+R A  +  L+P   A Y  +SN Y
Sbjct: 688 SKVWMTLLAACRMHGNPERGKRAARRITLLDPSIPAAYVVLSNIY 732



 Score =  255 bits (651), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 170/596 (28%), Positives = 308/596 (51%), Gaps = 17/596 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T  T    CT    L     + +Y + +  + +IY++N  I+ + K      A +L
Sbjct: 16  PDSVTFVTCLRACTVEGALDDGRKVHAYIRESGLETDIYAANALINMYGKCRSPEDAFQL 75

Query: 67  FDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           F  M + ++V++  +I    ++ H  ++++ L+ +M   GI+ +  T  +VL  C+    
Sbjct: 76  FSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRACN---- 131

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
            T+G Q+H  VL  G  L+  +G+ LVD+Y + G    A  +  E+P+R++ +WN+M+  
Sbjct: 132 LTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGDVDEADLVLREMPKRDVISWNIMISG 191

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           + +     E LR   +M+ +G+ P  +++  ++  CS G  L EGK +H  V+ +G +D 
Sbjct: 192 YAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSGEDLGEGKSIHRSVVDMG-LDR 250

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +  V + L+  Y  CGSL + K+S   +   + I+WN+I+  YA Y   F AL  F +MQ
Sbjct: 251 DEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQ 310

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
           L   +    +FV  L   S   ++  G  +H ++++LGF+  S+ V ++LT MY KC  +
Sbjct: 311 LQGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFE--SIIVHNSLTAMYAKCGSL 368

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           +++  +FE  P R+    NSL+++ +  G   DA + F  M  EG   DEVT  + L A 
Sbjct: 369 DAARKMFEGMPSRNSVSWNSLISAAIQHGCYADAHKFFQRMKLEGSRPDEVTCISMLDAC 428

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +  A+A  GS   +H   ++SGF+    V+ +L+  Y++ G  E +  VF+ +   N V 
Sbjct: 429 TKQANAKEGSS--IHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVS 486

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSM 544
           + +I+  Y   G+ R+A++M   M    +  DKVT++  L  C+  +G +  G+L+   M
Sbjct: 487 WNTILAAYVEKGLNRDAVEMFWKM---DVARDKVTYVAALDACSGLAGGLAHGKLIHGYM 543

Query: 545 -KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
               +    D    + +++M G+ G L +A ++  +     D + W+SL+ +   H
Sbjct: 544 LDHGFSNRLDTVAATALVNMYGKCGSLQEARKIFDEML-HRDVVTWTSLIVAYAQH 598



 Score =  191 bits (486), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 137/460 (29%), Positives = 226/460 (49%), Gaps = 22/460 (4%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           QAL LY  M   G++  + TF + L  C+  G   +G ++H  +   G   ++Y  + L+
Sbjct: 1   QALELYKRMQLEGVRPDSVTFVTCLRACTVEGALDDGRKVHAYIRESGLETDIYAANALI 60

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR-PDEVLRMYNKMKAEGVEPNG 211
           ++Y +      A  LF  +   N+ +W  ++  F +      E + ++ KM+ EG+ PN 
Sbjct: 61  NMYGKCRSPEDAFQLFSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNL 120

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   ++R C+    L +G+Q+H +V++ G + ++  + NALVD Y   G + EA     
Sbjct: 121 ITMVAVLRACN----LTDGRQVHGYVLEAG-MSLDTSLGNALVDMYCKTGDVDEADLVLR 175

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  DVISWN ++S YA      + L   +RMQ     P+  ++   LN  S   ++  
Sbjct: 176 EMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSGEDLGE 235

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE----SSVAVFESAPGRSLECCNSLM 387
           GK IH  V  +G D   V V+S L  MYGKC  +E    SS  V E    R+    N+++
Sbjct: 236 GKSIHRSVVDMGLDRDEV-VKSFLLGMYGKCGSLEDVKRSSCEVHE----RNTIAWNTII 290

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
            +     +   A+  F  M  +G+  D VT    L   + S+ A+L    LLH    + G
Sbjct: 291 GAYARYSDHFQALRSFQQMQLQGVKADAVTFVLMLG--TCSSPAHLAQGILLHDWISQLG 348

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           FES I V  SL   Y++CG ++ + ++FE +PS N V + S+++   ++G   +A    +
Sbjct: 349 FES-IIVHNSLTAMYAKCGSLDAARKMFEGMPSRNSVSWNSLISAAIQHGCYADAHKFFQ 407

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEG----QLVFNS 543
            M   G  PD+VT + +L  C      KEG    Q+V  S
Sbjct: 408 RMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVES 447



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 176/375 (46%), Gaps = 15/375 (4%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           T   +  TC+S   L+  +LL  +       +I   N     + K G L++A+K+F+ MP
Sbjct: 320 TFVLMLGTCSSPAHLAQGILLHDWISQLGFESIIVHNSLTAMYAKCGSLDAARKMFEGMP 379

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
           +R+ V++N LIS   +      A   +  M   G +    T  S+L  C+      EG  
Sbjct: 380 SRNSVSWNSLISAAIQHGCYADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSS 439

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH  V+  GF     + + L+ +Y ++G    A ++FD + ERN  +WN +L A+ E   
Sbjct: 440 IHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILAAYVEKGL 499

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVD-VNIFV 249
             + + M+ KM    V  + +++   +  CS +   L  GK +H +++  G+ + ++   
Sbjct: 500 NRDAVEMFWKMD---VARDKVTYVAALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVA 556

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
           A ALV+ Y  CGSL EA+K FD +   DV++W S++  YA +  I  AL+L   M+    
Sbjct: 557 ATALVNMYGKCGSLQEARKIFDEMLHRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQDGV 616

Query: 310 RPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +     F+  L+    +G +     YF   I  Y      +H      + + D+ G+   
Sbjct: 617 KVDDVVFLSILSGCDHSGLLEEGCKYFVSMIDDYGISPRLEH-----YNCIIDVLGRAGH 671

Query: 365 IESSVAVFESAPGRS 379
           ++ +  + +  P RS
Sbjct: 672 LDLAEKLVDRLPSRS 686


>gi|357521295|ref|XP_003630936.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524958|gb|AET05412.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 959

 Score =  319 bits (817), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 333/623 (53%), Gaps = 4/623 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            ++++  +  I  +  +G+++ AK LFDE+P RD + +N++++G  K      AL  + E
Sbjct: 209 HMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQE 268

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M +  +K ++ +F  +LSVC+  G    GIQ+H  V+  GF  +  + + ++ +Y + G 
Sbjct: 269 MRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPTVANTIITMYSKCGN 328

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +P+ +  TWN ++  + +    DE + ++  M   GV+ + ++F   +  
Sbjct: 329 LFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLPS 388

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                 L   K++HS++++ G V  ++++ +ALVD Y   G +  A K+F    + DV  
Sbjct: 389 VLKSGSLKYCKEVHSYIVRHG-VPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAV 447

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
             +++S Y    L  +AL LF  +      P+  +    L   +   ++  GK++H  + 
Sbjct: 448 CTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDIL 507

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K G ++    V S++T MY K   ++ +   F   P +   C N ++ S   +G  + A+
Sbjct: 508 KKGLEN-VCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSFSQNGKPELAI 566

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  M   G   D V+LS TL A +   +   G  + LHC  +++ F S+  V+ +L+D
Sbjct: 567 DLFRQMGTSGTKFDSVSLSATLSACANYPALYYG--KELHCFVVRNSFISDTFVASTLID 624

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+CG + L+  VF+ +   N V + SI+  Y  +G  RE LD+   M++ G+ PD VT
Sbjct: 625 MYSKCGKLALARSVFDMMDWKNEVSWNSIIAAYGNHGRPRECLDLFHEMVEAGIQPDHVT 684

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL +++ C H+G+V EG   F  M   YGI A  +H++CM+D+ GRAG L +A + ++  
Sbjct: 685 FLVIMSACGHAGLVDEGIYYFRCMTEEYGICARMEHFACMVDLYGRAGRLHEAFDTIKSM 744

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D   W SLL +CR+HGN  + +  +  L+EL+P +   Y  +SN ++  GE+E  +
Sbjct: 745 PFTPDAGTWGSLLGACRLHGNVELAKLASKHLVELDPNNSGYYVLLSNVHAGAGEWESVL 804

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
           ++R     + + +  G+S I+VN
Sbjct: 805 KVRSLMKEKGVQKIPGYSWIDVN 827



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 147/532 (27%), Positives = 264/532 (49%), Gaps = 20/532 (3%)

Query: 76  VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
           + +N LI G         AL  +  M+   +     TF  V+  C           +H  
Sbjct: 143 LPWNWLIRGFSMLGCFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHEL 202

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
             S+GF ++L+IGS L+ LY   G    A  LFDELP R+   WN+ML  + +    +  
Sbjct: 203 ARSMGFHMDLFIGSSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSA 262

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L  + +M+   V+PN +SF  ++  C+   ++  G QLH  VI+ G+ + +  VAN ++ 
Sbjct: 263 LGTFQEMRNSCVKPNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGF-ESDPTVANTIIT 321

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            YS CG+L +A+K FD +P  D ++WN +++ Y       +A+ LF  M     +    +
Sbjct: 322 MYSKCGNLFDARKIFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSIT 381

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLG--FDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
           F  FL    ++G++ + K++H Y+ + G  FD   V+++SAL D+Y K   +E +   F+
Sbjct: 382 FASFLPSVLKSGSLKYCKEVHSYIVRHGVPFD---VYLKSALVDIYFKGGDVEMACKTFQ 438

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
                 +  C ++++  + +G   +A+ +F +++ EG+  + +T+++ L A +  AS  L
Sbjct: 439 QNTLVDVAVCTAMISGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKL 498

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G  + LHC  +K G E+   V  S+   Y++ G ++L++Q F ++P  + VC+  ++  +
Sbjct: 499 G--KELHCDILKKGLENVCQVGSSITYMYAKSGRLDLAYQFFRRMPVKDSVCWNLMIVSF 556

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ-----LVFNSMKSVY 548
           S+NG    A+D+   M   G   D V+    L+ C +   +  G+     +V NS  S  
Sbjct: 557 SQNGKPELAIDLFRQMGTSGTKFDSVSLSATLSACANYPALYYGKELHCFVVRNSFIS-- 614

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
               D    S +IDM  + G L  A  +        + + W+S++ +   HG
Sbjct: 615 ----DTFVASTLIDMYSKCGKLALARSVFDMMDWKNE-VSWNSIIAAYGNHG 661



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 234/472 (49%), Gaps = 8/472 (1%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH +VL  G   +L +GS ++ +Y+         +LF  L       WN ++R F  L 
Sbjct: 97  QIHAKVLVCGMNGSLTLGSRMLGMYVLCRSFKDVGNLFCRLQLCYSLPWNWLIRGFSMLG 156

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             D  L  + +M    V P+  +F Y+++ C     +   K +H     +G+  +++F+ 
Sbjct: 157 CFDFALMFFFRMLGSNVAPDKYTFPYVIKACGGLNNVPLCKMVHELARSMGF-HMDLFIG 215

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           ++L+  Y+  G + +AK  FD +PV D I WN +++ Y        AL  F  M+    +
Sbjct: 216 SSLIKLYTDNGYIHDAKYLFDELPVRDCILWNVMLNGYVKNGDFNSALGTFQEMRNSCVK 275

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P+  SFV  L+  +  G V  G Q+HG V + GF+     V + +  MY KC  +  +  
Sbjct: 276 PNSVSFVCLLSVCATRGIVRAGIQLHGLVIRSGFESDPT-VANTIITMYSKCGNLFDARK 334

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F+  P       N L+   + +G   +AV +F  MV  G+ LD +T ++ L   SV  S
Sbjct: 335 IFDIMPQTDTVTWNGLIAGYVQNGFTDEAVALFKAMVTSGVKLDSITFASFLP--SVLKS 392

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
            +L  C+ +H   ++ G   ++ +  +L+D Y + G +E++ + F++    +V   T+++
Sbjct: 393 GSLKYCKEVHSYIVRHGVPFDVYLKSALVDIYFKGGDVEMACKTFQQNTLVDVAVCTAMI 452

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYG 549
           +GY  NG+  EAL++   +IQ G++P+ +T   VL  C     +K G +L  + +K   G
Sbjct: 453 SGYVLNGLNVEALNLFRWLIQEGMVPNCLTMASVLPACAALASLKLGKELHCDILKK--G 510

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           ++   Q  S +  M  ++G LD A +  ++ P   D + W+ ++ S   +G 
Sbjct: 511 LENVCQVGSSITYMYAKSGRLDLAYQFFRRMP-VKDSVCWNLMIVSFSQNGK 561


>gi|297833028|ref|XP_002884396.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330236|gb|EFH60655.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 882

 Score =  318 bits (816), Expect = 4e-84,   Method: Compositional matrix adjust.
 Identities = 186/660 (28%), Positives = 354/660 (53%), Gaps = 6/660 (0%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNS 62
           +K+ P   T  ++   C  +       L+     +   + ++Y  N  +D + + G L+ 
Sbjct: 100 SKVSPDKYTFPSVIKACAGLFDAEMGDLVYKQILEMGFESDLYVGNALVDMYSRMGLLSR 159

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+++FDEMP RD+V++N LISG     + ++AL +Y E+ +  I   + T SSVL   +N
Sbjct: 160 ARQVFDEMPVRDLVSWNSLISGYSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFAN 219

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                +G  +H   L  G      + + L+ +Y++      A  +FDE+  R+  T+N M
Sbjct: 220 LLVVKQGQGLHGFTLKSGVNSVSVVNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTM 279

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  + +L   +E ++M+ +   +  +P+ L+   ++  C     L   K +++++++ G+
Sbjct: 280 ICGYLKLEMVEESVKMFLE-NLDQFKPDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGF 338

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           V +   V N L+D Y+ CG +I A+  F+ +   D +SWNSI+S Y     + +A++LF 
Sbjct: 339 V-LESTVKNILIDVYAKCGDMITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFK 397

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M +  ++    +++  ++ ++R  ++ FGK +H    K G  +  + V +AL DMY KC
Sbjct: 398 MMMIMEEQADHITYLMLISLSTRLADLKFGKGLHSNGIKSGI-YIDLSVSNALIDMYAKC 456

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +  S+ +F S         N+++++ +  G+    +++   M    +  D  T   TL
Sbjct: 457 GEVGDSLKIFNSMGTLDTVTWNTVISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTL 516

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
              +  A+  LG  + +HCC ++ G+ES + +  +L++ YS+CG +E S +VFE++   +
Sbjct: 517 PMCASLAAKRLG--KEIHCCLLRFGYESELQIGNALIEMYSKCGCLESSFRVFERMSRRD 574

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           VV +T ++  Y   G G +AL+    M + G++PD V F+ ++  C+HSG+V++G   F 
Sbjct: 575 VVTWTGMIYAYGMYGEGEKALESFVDMEKSGIVPDSVVFIALIYACSHSGLVEKGLACFE 634

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            MK+ Y ID   +HY+C++D+L R+  + KAEE +Q  P   D  +W+S+LR+CR  G+ 
Sbjct: 635 KMKTHYKIDPMIEHYACVVDLLSRSQKISKAEEFIQAMPIEPDASIWASVLRACRTSGDM 694

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
               RV+  ++EL P D       SN Y+ + +++    IR++   + + ++ G+S IE+
Sbjct: 695 ETAERVSRRIIELNPDDPGYSILASNAYAALRKWDKVSLIRKSVRDKHIKKNPGYSWIEI 754



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 129/531 (24%), Positives = 273/531 (51%), Gaps = 9/531 (1%)

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           PA+++  +N +I    K     +AL  Y ++    +     TF SV+  C+       G 
Sbjct: 67  PAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDAEMGD 126

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            ++ ++L +GF  +LY+G+ LVD+Y RMG   RA  +FDE+P R+L +WN ++  +    
Sbjct: 127 LVYKQILEMGFESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISGYSSHG 186

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             +E L +Y++++   + P+  +   ++   +  +++ +G+ LH   +K G   V++ V 
Sbjct: 187 YYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSVSV-VN 245

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           N L+  Y       +A++ FD + V D +++N+++  Y   +++ +++++F    L + +
Sbjct: 246 NGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLE-NLDQFK 304

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P I +    L       ++   K I+ Y+ + GF   S  V++ L D+Y KC  + ++  
Sbjct: 305 PDILTVTSVLCACGHLRDLSLAKYIYNYMLRAGFVLEST-VKNILIDVYAKCGDMITARD 363

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF S   +     NS+++  + SG++ +A+++F  M+   I  ++    T L  +S+S  
Sbjct: 364 VFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMM---IMEEQADHITYLMLISLSTR 420

Query: 431 -ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            A+L   + LH   IKSG   +++VS +L+D Y++CG +  S ++F  + + + V + ++
Sbjct: 421 LADLKFGKGLHSNGIKSGIYIDLSVSNALIDMYAKCGEVGDSLKIFNSMGTLDTVTWNTV 480

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           ++   R G     L +   M +  ++PD  TFL  L  C      + G+ +   +   +G
Sbjct: 481 ISACVRFGDFATGLQVTTQMRKNKVVPDMATFLVTLPMCASLAAKRLGKEIHCCLLR-FG 539

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            +++ Q  + +I+M  + G L+ +  + ++     D + W+ ++ +  ++G
Sbjct: 540 YESELQIGNALIEMYSKCGCLESSFRVFERM-SRRDVVTWTGMIYAYGMYG 589



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 130/504 (25%), Positives = 251/504 (49%), Gaps = 13/504 (2%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           S++  S  LS  SN     E  +IH  V+SLG   + +    L+D Y        +L +F
Sbjct: 6   SSAFISRALSSSSN---LNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSVF 62

Query: 169 DEL-PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
             + P +N+  WN ++RAF +     + L  Y K++   V P+  +F  +++ C+     
Sbjct: 63  RRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFDA 122

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           + G  ++  ++++G+ + +++V NALVD YS  G L  A++ FD +PV D++SWNS++S 
Sbjct: 123 EMGDLVYKQILEMGF-ESDLYVGNALVDMYSRMGLLSRARQVFDEMPVRDLVSWNSLISG 181

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+ +    +ALE++  ++     P   +    L   +    V  G+ +HG+  K G +  
Sbjct: 182 YSSHGYYEEALEIYHELRNSWIVPDSFTVSSVLPAFANLLVVKQGQGLHGFTLKSGVNSV 241

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           SV V + L  MY K +    +  VF+    R     N+++   L    ++++V+MF   +
Sbjct: 242 SV-VNNGLLAMYLKFSRPTDARRVFDEMVVRDSVTYNTMICGYLKLEMVEESVKMFLENL 300

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           D+    D +T+++ L A       +L   + ++   +++GF     V   L+D Y++CG 
Sbjct: 301 DQ-FKPDILTVTSVLCA--CGHLRDLSLAKYIYNYMLRAGFVLESTVKNILIDVYAKCGD 357

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +  +  VF  +   + V + SI++GY ++G   EA+ + ++M+      D +T+L +++ 
Sbjct: 358 MITARDVFNSMECKDTVSWNSIISGYIQSGDLMEAMKLFKMMMIMEEQADHITYLMLISL 417

Query: 528 CNHSGMVKEGQ-LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
                 +K G+ L  N +KS  GI  D    + +IDM  + G +  + ++     G  D 
Sbjct: 418 STRLADLKFGKGLHSNGIKS--GIYIDLSVSNALIDMYAKCGEVGDSLKIFNSM-GTLDT 474

Query: 587 MMWSSLLRSCRVHGNEIIGRRVAN 610
           + W++++ +C   G+   G +V  
Sbjct: 475 VTWNTVISACVRFGDFATGLQVTT 498



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 52/187 (27%), Positives = 94/187 (50%), Gaps = 3/187 (1%)

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           +  +S+   + ++S+S+NL   R +H   I  G + +   S  L+D YS       S  V
Sbjct: 2   QTRVSSAFISRALSSSSNLNELRRIHALVISLGLDGSDFFSGKLIDKYSHFRAPASSLSV 61

Query: 475 FEKI-PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           F ++ P+ NV  + SI+  +S+NG   +AL+    + +  + PDK TF  V+  C     
Sbjct: 62  FRRVSPAKNVYIWNSIIRAFSKNGWFPKALEFYGKLRESKVSPDKYTFPSVIKACAGLFD 121

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            + G LV+  +  + G ++D    + ++DM  R G+L +A ++  + P   D + W+SL+
Sbjct: 122 AEMGDLVYKQILEM-GFESDLYVGNALVDMYSRMGLLSRARQVFDEMP-VRDLVSWNSLI 179

Query: 594 RSCRVHG 600
                HG
Sbjct: 180 SGYSSHG 186


>gi|302801269|ref|XP_002982391.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
 gi|300149983|gb|EFJ16636.1| hypothetical protein SELMODRAFT_116290 [Selaginella moellendorffii]
          Length = 779

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 189/587 (32%), Positives = 322/587 (54%), Gaps = 9/587 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +D + K+G ++ A  +  EMP RD++++N++ISG  +    K+ L     M   G+ 
Sbjct: 196 NALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGYAQSGDCKEGLRCLWRMQQDGLS 255

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  T++++L+ CS+     EG  IH  V+ +G   +  + S L+ +Y + G        
Sbjct: 256 PTKVTYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEVVKSFLLGMYGKCGSLEDVKRS 315

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
             E+ ERN   WN ++ A+   S   + LR + +M+ EGV+ + ++F  M+  CS    L
Sbjct: 316 SCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQLEGVKADAVTFVLMLGTCSSPAHL 375

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +G  LH  + +LG+   +I V N+L   Y+ CGSL  A+K F+ +P  + +SWNS++S 
Sbjct: 376 AQGILLHDWISQLGFE--SIIVHNSLTAMYAKCGSLDAARKMFEEMPSRNSVSWNSLMSA 433

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
              +    DA + F RM+L   RP   + +  L+  ++  N   G  IH  V + GFD  
Sbjct: 434 AIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSSIHQMVVESGFDK- 492

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
              V +AL  MY K    E++  VF++   R+    N+++ + +  G  +DAVEMF  M 
Sbjct: 493 RTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILAAYVEKGLNRDAVEMFWKM- 551

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI--AVSCSLMDAYSRC 465
              +  D+VT    L A S   +  L   +L+H   +  GF + +    + +L++ Y +C
Sbjct: 552 --DVARDKVTYVAALDACS-GLAGGLAHGKLIHGYMLDHGFSNRLDTVAATALVNMYGKC 608

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ + ++F+ +   +VV +TS++  Y+++    +AL ++++M Q G+  D V FL +L
Sbjct: 609 GSLQEARKIFDGMLHRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQEGVKVDDVVFLSIL 668

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           +GC+HSG+++EG   F SM   YGI    +HY+C+ID+LGRAG LD AE+L+ + P   D
Sbjct: 669 SGCDHSGLLEEGCKYFVSMIDDYGISPRLEHYNCIIDVLGRAGHLDLAEKLVDRLPSRSD 728

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
             +W +LL +CR+HGN   G+R A  +  L+P   A Y  +SN Y++
Sbjct: 729 SKVWMTLLAACRMHGNPERGKRAARRITLLDPSIPAAYVVLSNIYTQ 775



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 169/596 (28%), Positives = 305/596 (51%), Gaps = 17/596 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T  T    CT    L     + ++ +    + +IY++N  I+ + K      A +L
Sbjct: 57  PDSVTFVTCLKACTVEGALGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAFQL 116

Query: 67  FDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           F  M + ++V++  +I    ++ H  ++++ L+ +M   GI+ +  T  +VL  C+    
Sbjct: 117 FSRMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRACN---- 172

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
            T+G Q+H  VL  G  L+  +G+ LVD+Y + G    A  +  E+P+R++ +WN+M+  
Sbjct: 173 LTDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISG 232

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           + +     E LR   +M+ +G+ P  +++  ++  CS    L EGK +H  V+ +G +D 
Sbjct: 233 YAQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDMG-LDR 291

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +  V + L+  Y  CGSL + K+S   +   + I+WN+I+  YA Y   F AL  F +MQ
Sbjct: 292 DEVVKSFLLGMYGKCGSLEDVKRSSCEVHERNTIAWNTIIGAYARYSDHFQALRSFQQMQ 351

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
           L   +    +FV  L   S   ++  G  +H ++++LGF+  S+ V ++LT MY KC  +
Sbjct: 352 LEGVKADAVTFVLMLGTCSSPAHLAQGILLHDWISQLGFE--SIIVHNSLTAMYAKCGSL 409

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           +++  +FE  P R+    NSLM++ +  G   DA + F  M  EG   DEVT  + L A 
Sbjct: 410 DAARKMFEEMPSRNSVSWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDAC 469

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +  A+A  GS   +H   ++SGF+    V+ +L+  Y++ G  E +  VF+ +   N V 
Sbjct: 470 TKQANAKEGSS--IHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVS 527

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSM 544
           + +I+  Y   G+ R+A++M   M    +  DKVT++  L  C+  +G +  G+L+   M
Sbjct: 528 WNTILAAYVEKGLNRDAVEMFWKM---DVARDKVTYVAALDACSGLAGGLAHGKLIHGYM 584

Query: 545 -KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
               +    D    + +++M G+ G L +A ++        D + W+SL+ +   H
Sbjct: 585 LDHGFSNRLDTVAATALVNMYGKCGSLQEARKIFDGML-HRDVVTWTSLIVAYAQH 639



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 146/500 (29%), Positives = 246/500 (49%), Gaps = 23/500 (4%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK-QALYLYDEMVSHGIKESAST 112
           + K G L++A ++F ++    +  ++ L+       +   QAL LY  M   G++  + T
Sbjct: 2   YGKCGDLDAASEVFGKLDPLHVAAWSALLGAYANSENDAVQALELYKRMQLEGVRPDSVT 61

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           F + L  C+  G   +G ++H  +  LG   ++Y  + L+++Y +      A  LF  + 
Sbjct: 62  FVTCLKACTVEGALGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAFQLFSRME 121

Query: 173 ERNLATWNLMLRAFCELSR-PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             N+ +W  ++  F +      E + ++ KM+ EG+ PN ++   ++R C+    L +G+
Sbjct: 122 SPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRACN----LTDGR 177

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           Q+H +V++ G + ++  + NALVD Y   G + EA      +P  DVISWN ++S YA  
Sbjct: 178 QVHGYVLEAG-MSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGYAQS 236

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               + L   +RMQ     P+  ++   LN  S   ++  GK IH  V  +G D   V V
Sbjct: 237 GDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDMGLDRDEV-V 295

Query: 352 QSALTDMYGKCNVIE----SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +S L  MYGKC  +E    SS  V E    R+    N+++ +     +   A+  F  M 
Sbjct: 296 KSFLLGMYGKCGSLEDVKRSSCEVHE----RNTIAWNTIIGAYARYSDHFQALRSFQQMQ 351

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            EG+  D VT    L   + S+ A+L    LLH    + GFES I V  SL   Y++CG 
Sbjct: 352 LEGVKADAVTFVLMLG--TCSSPAHLAQGILLHDWISQLGFES-IIVHNSLTAMYAKCGS 408

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           ++ + ++FE++PS N V + S+M+   ++G   +A    + M   G  PD+VT + +L  
Sbjct: 409 LDAARKMFEEMPSRNSVSWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDA 468

Query: 528 CNHSGMVKEG----QLVFNS 543
           C      KEG    Q+V  S
Sbjct: 469 CTKQANAKEGSSIHQMVVES 488



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 177/375 (47%), Gaps = 15/375 (4%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           T   +  TC+S   L+  +LL  +       +I   N     + K G L++A+K+F+EMP
Sbjct: 361 TFVLMLGTCSSPAHLAQGILLHDWISQLGFESIIVHNSLTAMYAKCGSLDAARKMFEEMP 420

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
           +R+ V++N L+S   +      A   +  M   G +    T  S+L  C+      EG  
Sbjct: 421 SRNSVSWNSLMSAAIQHGCHADAHKFFQRMKLEGSRPDEVTCISMLDACTKQANAKEGSS 480

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH  V+  GF     + + L+ +Y ++G    A ++FD + ERN  +WN +L A+ E   
Sbjct: 481 IHQMVVESGFDKRTGVANALIFMYAKLGDHEAARNVFDAMAERNTVSWNTILAAYVEKGL 540

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVD-VNIFV 249
             + + M+ KM    V  + +++   +  CS +   L  GK +H +++  G+ + ++   
Sbjct: 541 NRDAVEMFWKMD---VARDKVTYVAALDACSGLAGGLAHGKLIHGYMLDHGFSNRLDTVA 597

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
           A ALV+ Y  CGSL EA+K FD +   DV++W S++  YA +  I  AL+L   M+    
Sbjct: 598 ATALVNMYGKCGSLQEARKIFDGMLHRDVVTWTSLIVAYAQHSEIEQALKLVKIMEQEGV 657

Query: 310 RPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +     F+  L+    +G +     YF   I  Y      +H      + + D+ G+   
Sbjct: 658 KVDDVVFLSILSGCDHSGLLEEGCKYFVSMIDDYGISPRLEH-----YNCIIDVLGRAGH 712

Query: 365 IESSVAVFESAPGRS 379
           ++ +  + +  P RS
Sbjct: 713 LDLAEKLVDRLPSRS 727



 Score =  129 bits (323), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 87/318 (27%), Positives = 166/318 (52%), Gaps = 10/318 (3%)

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIR 314
            Y  CG L  A + F  +    V +W++++  YA+ +     ALEL+ RMQL   RP   
Sbjct: 1   MYGKCGDLDAASEVFGKLDPLHVAAWSALLGAYANSENDAVQALELYKRMQLEGVRPDSV 60

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           +FV  L   +  G +  G+++H ++ +LG +   ++  +AL +MYGKC   E +  +F  
Sbjct: 61  TFVTCLKACTVEGALGDGRKVHAHIRELGLE-TDIYAANALINMYGKCRSPEDAFQLFSR 119

Query: 375 APGRSLECCNSLMTSLLHSGNI-KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
               ++    S++ +    G++ +++V +F  M  EGI  + +T+   L+A       NL
Sbjct: 120 MESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRA------CNL 173

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
              R +H   +++G   + ++  +L+D Y + G ++ +  V  ++P  +V+ +  +++GY
Sbjct: 174 TDGRQVHGYVLEAGMSLDTSLGNALVDMYCKTGGVDEADVVLREMPKRDVISWNIMISGY 233

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
           +++G  +E L  L  M Q GL P KVT+  +L  C+    + EG+ +  S+  + G+D D
Sbjct: 234 AQSGDCKEGLRCLWRMQQDGLSPTKVTYATLLNACSSEEDLGEGKSIHRSVVDM-GLDRD 292

Query: 554 RQHYSCMIDMLGRAGILD 571
               S ++ M G+ G L+
Sbjct: 293 EVVKSFLLGMYGKCGSLE 310



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 68/238 (28%), Positives = 130/238 (54%), Gaps = 10/238 (4%)

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK-DAVEMFGFMVDEGIGLDEV 416
           MYGKC  ++++  VF       +   ++L+ +  +S N    A+E++  M  EG+  D V
Sbjct: 1   MYGKCGDLDAASEVFGKLDPLHVAAWSALLGAYANSENDAVQALELYKRMQLEGVRPDSV 60

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T  T LKA +V  +  LG  R +H    + G E++I  + +L++ Y +C   E + Q+F 
Sbjct: 61  TFVTCLKACTVEGA--LGDGRKVHAHIRELGLETDIYAANALINMYGKCRSPEDAFQLFS 118

Query: 477 KIPSPNVVCFTSIMNGYSRNG-MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           ++ SPNVV +TS++  +++ G +GRE++ +   M   G+ P+ +T + VL  CN    + 
Sbjct: 119 RMESPNVVSWTSVIGNFAQYGHLGRESVLLFRKMELEGIRPNLITMVAVLRACN----LT 174

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +G+ V   +    G+  D    + ++DM  + G +D+A+ +L++ P   D + W+ ++
Sbjct: 175 DGRQVHGYVLEA-GMSLDTSLGNALVDMYCKTGGVDEADVVLREMP-KRDVISWNIMI 230



 Score = 54.7 bits (130), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 39/162 (24%), Positives = 86/162 (53%), Gaps = 11/162 (6%)

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN-GMGREALDMLEVMIQRGLIPDKVT 520
           Y +CG ++ + +VF K+   +V  +++++  Y+ +     +AL++ + M   G+ PD VT
Sbjct: 2   YGKCGDLDAASEVFGKLDPLHVAAWSALLGAYANSENDAVQALELYKRMQLEGVRPDSVT 61

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ-- 578
           F+  L  C   G + +G+ V   ++ + G++ D    + +I+M G+    + A +L    
Sbjct: 62  FVTCLKACTVEGALGDGRKVHAHIREL-GLETDIYAANALINMYGKCRSPEDAFQLFSRM 120

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL--MELEPV 618
           ++P   + + W+S++ +   +G+  +GR    +   MELE +
Sbjct: 121 ESP---NVVSWTSVIGNFAQYGH--LGRESVLLFRKMELEGI 157


>gi|225445472|ref|XP_002281953.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial [Vitis vinifera]
          Length = 773

 Score =  318 bits (816), Expect = 5e-84,   Method: Compositional matrix adjust.
 Identities = 199/636 (31%), Positives = 341/636 (53%), Gaps = 21/636 (3%)

Query: 28  SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK 87
           SS  +     PN  +N+Y          K+G  + A  +F+ +   D+V++N ++SG   
Sbjct: 106 SSGFISHVTVPNSLMNMY---------CKAGLFDRALVVFENLNNPDIVSWNTVLSG--- 153

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
           F+    AL     M   G+   A T ++VL+ CS+   +  G Q+H R+L  G    +++
Sbjct: 154 FQRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFV 213

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD-EVLRMYNKMKAEG 206
           G+ L+ +Y R    V A  +FDE+  ++L +WN ML  + +      E + ++ +M  EG
Sbjct: 214 GNALITMYSRCCRLVEARRVFDEMRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEG 273

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           ++ + +SF   +  C  G   + G+Q+HS  +K+G+ D ++ V N L+  YS C  + +A
Sbjct: 274 MKLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGY-DTHVKVCNVLISTYSKCEDIEDA 332

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           K  F+ I   +V+SW +++SI  +     DA  LF  M+     P+  +FV  ++  +  
Sbjct: 333 KLVFESIIDRNVVSWTTMISISEE-----DATSLFNEMRRDGVYPNDVTFVGLIHAITMK 387

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
             V  G+ IHG   K  F    ++V ++L  MY K   +  S+ VFE    R +   NSL
Sbjct: 388 NLVEEGQMIHGVCVKTSF-LSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSL 446

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           ++    +G  ++A++ F   + E    +E T  + L +++ + + ++   +  H   +K 
Sbjct: 447 ISGYAQNGLWQEALQTFLSALMESRP-NEFTFGSVLSSIASAEAISMRHGQRCHSHILKL 505

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G  +N  VS +L+D Y++ G I  S  VF + P  N V +T+I++ ++R+G     +++ 
Sbjct: 506 GLNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLF 565

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
           + M + G+ PD +TFL V+  C   GMV  G  +FNSM   + I+   +HYS M+DMLGR
Sbjct: 566 KDMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGR 625

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           AG L +AEE + Q PGG    +  SLL +CR+HGN  + +RVA+ L+E+EP+    Y  +
Sbjct: 626 AGRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPMGSGSYVLM 685

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           SN Y+E GE+E   +IR+    R + ++IG S ++V
Sbjct: 686 SNLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDV 721



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 138/529 (26%), Positives = 267/529 (50%), Gaps = 25/529 (4%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +AL L+ + +  G   +    +  + + +  G    G QIH   +S GF  ++ + + L+
Sbjct: 61  EALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNSLM 120

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           ++Y + G   RAL +F+ L   ++ +WN +L  F    R D+ L    +M   GV  + +
Sbjct: 121 NMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGF---QRSDDALNFALRMNFTGVAFDAV 177

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  CS       G QLHS ++K G +D  +FV NAL+  YS C  L+EA++ FD 
Sbjct: 178 TCTTVLAFCSDHEGFIFGFQLHSRILKCG-LDCEVFVGNALITMYSRCCRLVEARRVFDE 236

Query: 273 IPVDDVISWNSIVSIYA-DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
           +   D++SWN+++S YA + +   +A+ +F  M     +    SF   ++          
Sbjct: 237 MRNKDLVSWNAMLSGYAQEGNSGLEAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFEL 296

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+QIH    K+G+D   V V + L   Y KC  IE +  VFES   R++    +++    
Sbjct: 297 GRQIHSLAVKIGYD-THVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMI---- 351

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            S + +DA  +F  M  +G+  ++VT    + A+++      G  +++H   +K+ F S 
Sbjct: 352 -SISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEG--QMIHGVCVKTSFLSE 408

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML--EVM 509
           + VS SL+  Y++   +  S +VFE++    ++ + S+++GY++NG+ +EAL      +M
Sbjct: 409 LNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALM 468

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMV--KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
             R   P++ TF  VL+    +  +  + GQ   + +  + G++ +    S ++DM  + 
Sbjct: 469 ESR---PNEFTFGSVLSSIASAEAISMRHGQRCHSHILKL-GLNTNPIVSSALLDMYAKR 524

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           G + ++  +  +TP   + + W++++ +   HG+      V N+  ++E
Sbjct: 525 GSICESLGVFSETPLKNE-VAWTAIISAHARHGDY---EAVMNLFKDME 569



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/281 (25%), Positives = 133/281 (47%), Gaps = 15/281 (5%)

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI--GLDEVTLSTTLKALSVSA 429
            + +P  ++   N  M + L      +A+++F   +  G    +D+VT++  LKA     
Sbjct: 35  LDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQVTVAIVLKA--CCG 92

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            + LG C++ H  AI SGF S++ V  SLM+ Y + G  + +  VFE + +P++V + ++
Sbjct: 93  DSKLG-CQI-HAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTV 150

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC-NHSGMVKEGQLVFNSMKSVY 548
           ++G+ R+    +AL+    M   G+  D VT   VLA C +H G +   QL    +K   
Sbjct: 151 LSGFQRSD---DALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKC-- 205

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           G+D +    + +I M  R   L +A  +  +     D + W+++L      GN  +   +
Sbjct: 206 GLDCEVFVGNALITMYSRCCRLVEARRVFDEMR-NKDLVSWNAMLSGYAQEGNSGLEAIL 264

Query: 609 A--NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
               +L E   +D   ++   +      EFE+  QI   A+
Sbjct: 265 VFLEMLKEGMKLDHVSFTGAISACGHGKEFELGRQIHSLAV 305


>gi|297836116|ref|XP_002885940.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331780|gb|EFH62199.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 944

 Score =  318 bits (815), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 191/629 (30%), Positives = 332/629 (52%), Gaps = 11/629 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S+N  I  +VK G L+SA+ LFD MP R +VT+ +L+       H  +A  L+ 
Sbjct: 71  PHKNTVSTNTMISGYVKMGDLSSARHLFDAMPDRTVVTWTILMGWYAGNNHFDEAFKLFR 130

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M          TF+++L  C++A       Q+H   + LGF  NL++   + ++ ++  
Sbjct: 131 QMCRSCTLPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFL--TVCNVLLKSY 188

Query: 160 PSVRALDL----FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
             VR LDL    F+E+ +++  T+N ++  + +     E + ++ KM+  G +P+  +F 
Sbjct: 189 CEVRRLDLACVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFS 248

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            +++          G+QLH   +  G+   +  V N ++ FYS    ++E +  F+ +P 
Sbjct: 249 GVLKAVVGLHDFALGQQLHGLSVTTGF-SRDASVGNQILHFYSKHDRVLETRNLFNEMPE 307

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +S+N ++S Y+  +   ++L LF  MQ          F   L+ A+   ++  G+Q+
Sbjct: 308 LDFVSYNVVISSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQV 367

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H        D   +HV ++L DMY KC + + +  +F+S   RS     +L++  +  G 
Sbjct: 368 HCQAIVATAD-SILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGL 426

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
               +++F  M    +  D+ T +T LKA +  AS  LG  + LH   I+SG   N+   
Sbjct: 427 HGAGLKLFTKMRGANLRADQSTFATVLKASAGFASLLLG--KQLHAFIIRSGNLENVFSG 484

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             L+D Y++CG I+ + QVFE++P  N V + ++++ Y+ NG G  A+     MIQ GL 
Sbjct: 485 SGLVDMYAKCGSIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQ 544

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD V+ L VL  C+H G V++G   F +M  +YGI   ++HY+CM+D+LGR G   +AE+
Sbjct: 545 PDSVSILGVLIACSHCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEAEK 604

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIG 634
           L+ + P   D +MWSS+L +CR++ N+ +  R A  L  +E + D A Y  +SN Y+  G
Sbjct: 605 LMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQLFSMEKLRDAAAYVSMSNIYAAAG 664

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
           ++E    +++    R + +   +S +EVN
Sbjct: 665 KWENVRHVKKAMRERGIKKVPAYSWVEVN 693



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 131/519 (25%), Positives = 244/519 (47%), Gaps = 34/519 (6%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYCQP---NPQLNIYSSNRTIDDFVKSGHLNSA 63
           LP   T TTL P C   VP ++   + ++      +  L +   N  +  + +   L+ A
Sbjct: 138 LPDYVTFTTLLPGCNDAVPQNAVGQVHAFAVKLGFDTNLFLTVCNVLLKSYCEVRRLDLA 197

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
             LF+E+  +D VT+N LI+G  K     +A++L+ +M   G K S  TFS VL      
Sbjct: 198 CVLFEEILDKDSVTFNTLITGYEKDGLYTEAIHLFLKMRQSGHKPSDFTFSGVLKAVVGL 257

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
             +  G Q+H   ++ GF  +  +G+ ++  Y +    +   +LF+E+PE +  ++N+++
Sbjct: 258 HDFALGQQLHGLSVTTGFSRDASVGNQILHFYSKHDRVLETRNLFNEMPELDFVSYNVVI 317

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
            ++ +  + +E L ++ +M+  G +     F  M+   +    L  G+Q+H   I +   
Sbjct: 318 SSYSQAEQYEESLNLFREMQCMGFDRRNFPFATMLSIAANLSSLQVGRQVHCQAI-VATA 376

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           D  + V N+LVD Y+ C    EA+  F  +     +SW +++S Y    L    L+LF +
Sbjct: 377 DSILHVGNSLVDMYAKCEMFDEAELIFKSLSQRSTVSWTALISGYVQKGLHGAGLKLFTK 436

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M+    R    +F   L  ++   ++  GKQ+H ++ + G +  +V   S L DMY KC 
Sbjct: 437 MRGANLRADQSTFATVLKASAGFASLLLGKQLHAFIIRSG-NLENVFSGSGLVDMYAKCG 495

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            I+ +V VFE  P R+    N+L+++   +G+ + A+  F  M+  G+  D V++   L 
Sbjct: 496 SIKDAVQVFEEMPDRNAVSWNALISAYADNGDGEAAIGAFTKMIQSGLQPDSVSILGVLI 555

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVS------------CSLMDAYSRCGHIELS 471
           A S             HC  ++ G E   A+S              ++D   R G    +
Sbjct: 556 ACS-------------HCGFVEQGTEFFQAMSPIYGITPKKKHYACMLDLLGRNGRFAEA 602

Query: 472 HQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
            ++ +++P  P+ + ++S++N    Y    +   A + L
Sbjct: 603 EKLMDEMPFEPDEIMWSSVLNACRIYKNQSLAERAAEQL 641


>gi|15240444|ref|NP_198063.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635756|sp|O04659.2|PP398_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g27110
 gi|332006268|gb|AED93651.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 691

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 195/610 (31%), Positives = 328/610 (53%), Gaps = 9/610 (1%)

Query: 62  SAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-TFSSVLSV 119
           SA+ +F+    R D+  +N L+SG  K       L ++  +++  I    S TF +V+  
Sbjct: 57  SARHVFENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIKA 116

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
               G    G  IH  V+  G+  ++ + S LV +Y +      +L +FDE+PER++A+W
Sbjct: 117 YGALGREFLGRMIHTLVVKSGYVCDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASW 176

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  F +    ++ L ++ +M++ G EPN +S    +  CS  + L+ GK++H   +K
Sbjct: 177 NTVISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVK 236

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ +++ +V +ALVD Y  C  L  A++ F  +P   +++WNS++  Y         +E
Sbjct: 237 KGF-ELDEYVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVE 295

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +  RM +   RPS  +    L   SR+ N+  GK IHGYV +    +  ++V  +L D+Y
Sbjct: 296 ILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFIHGYVIR-SVVNADIYVNCSLIDLY 354

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC     +  VF        E  N +++S +  GN   AVE++  MV  G+  D VT +
Sbjct: 355 FKCGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFT 414

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A S  A+   G  + +H    +S  E++  +  +L+D YS+CG+ + + ++F  IP
Sbjct: 415 SVLPACSQLAALEKG--KQIHLSISESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP 472

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +VV +T +++ Y  +G  REAL   + M + GL PD VT L VL+ C H+G++ EG  
Sbjct: 473 KKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLK 532

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD-CMMWSSLLRSCRV 598
            F+ M+S YGI+   +HYSCMID+LGRAG L +A E++QQTP   D   + S+L  +C +
Sbjct: 533 FFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYEIIQQTPETSDNAELLSTLFSACCL 592

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H    +G R+A +L+E  P D + Y  + N Y+    ++ + ++R       L +  G S
Sbjct: 593 HLEHSLGDRIARLLVENYPDDASTYMVLFNLYASGESWDAARRVRLKMKEMGLRKKPGCS 652

Query: 659 LIEVNS--CH 666
            IE++   CH
Sbjct: 653 WIEMSDKVCH 662



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 138/497 (27%), Positives = 252/497 (50%), Gaps = 13/497 (2%)

Query: 110 ASTFSSVLSVCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +S   S+L  C+N+      I+ +H R+L+LG   ++ +   L+++Y        A  +F
Sbjct: 3   SSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVYFTCKDHCSARHVF 62

Query: 169 DELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGML 226
           +    R ++  WN ++  + + S   + L ++ ++    +  P+  +F  +++  + G L
Sbjct: 63  ENFDIRSDVYIWNSLMSGYSKNSMFHDTLEVFKRLLNCSICVPDSFTFPNVIK--AYGAL 120

Query: 227 LDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             E  G+ +H+ V+K G+V  ++ VA++LV  Y+       + + FD +P  DV SWN++
Sbjct: 121 GREFLGRMIHTLVVKSGYV-CDVVVASSLVGMYAKFNLFENSLQVFDEMPERDVASWNTV 179

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S +        ALELF RM+     P+  S    ++  SR   +  GK+IH    K GF
Sbjct: 180 ISCFYQSGEAEKALELFGRMESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGF 239

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +    +V SAL DMYGKC+ +E +  VF+  P +SL   NS++   +  G+ K  VE+  
Sbjct: 240 ELDE-YVNSALVDMYGKCDCLEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILN 298

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+ EG    + TL++ L  ++ S S NL   + +H   I+S   ++I V+CSL+D Y +
Sbjct: 299 RMIIEGTRPSQTTLTSIL--MACSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFK 356

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG   L+  VF K        +  +++ Y   G   +A+++ + M+  G+ PD VTF  V
Sbjct: 357 CGEANLAETVFSKTQKDVAESWNVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSV 416

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  C+    +++G+ +  S+ S   ++ D    S ++DM  + G   +A  +    P   
Sbjct: 417 LPACSQLAALEKGKQIHLSI-SESRLETDELLLSALLDMYSKCGNEKEAFRIFNSIP-KK 474

Query: 585 DCMMWSSLLRSCRVHGN 601
           D + W+ ++ +   HG 
Sbjct: 475 DVVSWTVMISAYGSHGQ 491



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 206/426 (48%), Gaps = 3/426 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K     ++ ++FDEMP RD+ ++N +IS   +    ++AL L+  M S G + ++ + 
Sbjct: 152 YAKFNLFENSLQVFDEMPERDVASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVSL 211

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +  +S CS   +   G +IH + +  GF L+ Y+ S LVD+Y +      A ++F ++P 
Sbjct: 212 TVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMPR 271

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++L  WN M++ +         + + N+M  EG  P+  +   ++  CS    L  GK +
Sbjct: 272 KSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFI 331

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H +VI+   V+ +I+V  +L+D Y  CG    A+  F     D   SWN ++S Y     
Sbjct: 332 HGYVIR-SVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESWNVMISSYISVGN 390

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
            F A+E++ +M     +P + +F   L   S+   +  GKQIH  +++   +   + + S
Sbjct: 391 WFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDEL-LLS 449

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL DMY KC   + +  +F S P + +     ++++    G  ++A+  F  M   G+  
Sbjct: 450 ALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLKP 509

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D VTL   L A   +   + G  +       K G E  I     ++D   R G +  +++
Sbjct: 510 DGVTLLAVLSACGHAGLIDEG-LKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAYE 568

Query: 474 VFEKIP 479
           + ++ P
Sbjct: 569 IIQQTP 574



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 92/381 (24%), Positives = 186/381 (48%), Gaps = 4/381 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S+   P   ++T     C+ ++ L     +   C +   +L+ Y ++  +D + K   
Sbjct: 199 MESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDC 258

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+++F +MP + +V +N +I G       K  + + + M+  G + S +T +S+L  
Sbjct: 259 LEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMA 318

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS +     G  IH  V+      ++Y+   L+DLY + G +  A  +F +  +    +W
Sbjct: 319 CSRSRNLLHGKFIHGYVIRSVVNADIYVNCSLIDLYFKCGEANLAETVFSKTQKDVAESW 378

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N+M+ ++  +    + + +Y++M + GV+P+ ++F  ++  CS    L++GKQ+H  + +
Sbjct: 379 NVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISE 438

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              ++ +  + +AL+D YS CG+  EA + F+ IP  DV+SW  ++S Y  +    +AL 
Sbjct: 439 -SRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALY 497

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDM 358
            F  MQ    +P   + +  L+     G +  G +    + +K G +    H  S + D+
Sbjct: 498 QFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHY-SCMIDI 556

Query: 359 YGKCNVIESSVAVFESAPGRS 379
            G+   +  +  + +  P  S
Sbjct: 557 LGRAGRLLEAYEIIQQTPETS 577


>gi|356569698|ref|XP_003553033.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Glycine max]
          Length = 824

 Score =  318 bits (814), Expect = 7e-84,   Method: Compositional matrix adjust.
 Identities = 181/602 (30%), Positives = 330/602 (54%), Gaps = 10/602 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESASTFSSV 116
           G L+ +   F  +  +++ ++N ++S   +    + ++    E++S  G++    TF  V
Sbjct: 97  GDLSLSSTTFKHIQRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPV 156

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L  C +     +G ++HC VL +GF  ++Y+ + L+ LY R G    A  +F ++P R++
Sbjct: 157 LKACLSLA---DGEKMHCWVLKMGFEHDVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDV 213

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +WN M+  FC+     E LR+ ++MK E V+ + ++   M+  C+    +  G  +H +
Sbjct: 214 GSWNAMISGFCQNGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLY 273

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           VIK G ++ ++FV+NAL++ YS  G L +A++ FD + V D++SWNSI++ Y   D    
Sbjct: 274 VIKHG-LESDVFVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVT 332

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           AL  F  M     RP + + V   +   +  +   G+ +HG+V +  +    + + +AL 
Sbjct: 333 ALGFFKEMLFVGMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALV 392

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG--IGLD 414
           +MY K   I+ + AVFE  P R +   N+L+T    +G   +A++ +  M++EG  I  +
Sbjct: 393 NMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYN-MMEEGRTIVPN 451

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           + T  + L A S   +   G    +H   IK+    ++ V+  L+D Y +CG +E +  +
Sbjct: 452 QGTWVSILPAYSHVGALQQG--MKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAMSL 509

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F +IP    V + +I++    +G G +AL + + M   G+  D +TF+ +L+ C+HSG+V
Sbjct: 510 FYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSGLV 569

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            E Q  F++M+  Y I  + +HY CM+D+ GRAG L+KA  L+   P   D  +W +LL 
Sbjct: 570 DEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADASIWGTLLA 629

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +CR+HGN  +G   ++ L+E++  +   Y  +SN Y+ +G++E ++++R  A  R L + 
Sbjct: 630 ACRIHGNAELGTFASDRLLEVDSENVGYYVLLSNIYANVGKWEGAVKVRSLARDRGLRKT 689

Query: 655 IG 656
            G
Sbjct: 690 PG 691



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 230/442 (52%), Gaps = 11/442 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y +   I  + + G +  A K+F +MP RD+ ++N +ISG  +  +  +AL + D M 
Sbjct: 181 DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQNGNVAEALRVLDRMK 240

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  +K    T SS+L +C+ +     G+ +H  V+  G   ++++ + L+++Y + G   
Sbjct: 241 TEEVKMDTVTVSSMLPICAQSNDVVGGVLVHLYVIKHGLESDVFVSNALINMYSKFGRLQ 300

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD +  R+L +WN ++ A+ +   P   L  + +M   G+ P+ L+   +     
Sbjct: 301 DAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFVGMRPDLLTVVSL--ASI 358

Query: 223 IGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
            G L D   G+ +H  V++  W++V+I + NALV+ Y+  GS+  A+  F+ +P  DVIS
Sbjct: 359 FGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVIS 418

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           WN++++ YA   L  +A++ +  M+  R   P+  ++V  L   S  G +  G +IHG +
Sbjct: 419 WNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRL 478

Query: 340 TK--LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            K  L  D   V V + L DMYGKC  +E ++++F   P  +    N++++SL   G+ +
Sbjct: 479 IKNCLFLD---VFVATCLIDMYGKCGRLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGE 535

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A+++F  M  +G+  D +T  + L A S S   +            +   + N+     
Sbjct: 536 KALQLFKDMRADGVKADHITFVSLLSACSHSGLVDEAQW-CFDTMQKEYRIKPNLKHYGC 594

Query: 458 LMDAYSRCGHIELSHQVFEKIP 479
           ++D + R G++E ++ +   +P
Sbjct: 595 MVDLFGRAGYLEKAYNLVSNMP 616



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 107/445 (24%), Positives = 211/445 (47%), Gaps = 14/445 (3%)

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  + R C+    ++  KQLH+ ++ LG    ++ +   LV  Y+  G L  +  +F  I
Sbjct: 54  FNLVFRSCTN---INVAKQLHALLLVLGKAQ-DVVLLTQLVTLYATLGDLSLSSTTFKHI 109

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
              ++ SWNS+VS Y       D+++     + L   RP   +F   L       +   G
Sbjct: 110 QRKNIFSWNSMVSAYVRRGRYRDSMDCVTELLSLSGVRPDFYTFPPVLKACLSLAD---G 166

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           +++H +V K+GF+H  V+V ++L  +Y +   +E +  VF   P R +   N++++    
Sbjct: 167 EKMHCWVLKMGFEH-DVYVAASLIHLYSRFGAVEVAHKVFVDMPVRDVGSWNAMISGFCQ 225

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           +GN+ +A+ +   M  E + +D VT+S+ L   + S     G   L+H   IK G ES++
Sbjct: 226 NGNVAEALRVLDRMKTEEVKMDTVTVSSMLPICAQSNDVVGGV--LVHLYVIKHGLESDV 283

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            VS +L++ YS+ G ++ + +VF+ +   ++V + SI+  Y +N     AL   + M+  
Sbjct: 284 FVSNALINMYSKFGRLQDAQRVFDGMEVRDLVSWNSIIAAYEQNDDPVTALGFFKEMLFV 343

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD +T + + +        + G+ V   +     ++ D    + +++M  + G +D 
Sbjct: 344 GMRPDLLTVVSLASIFGQLSDRRIGRAVHGFVVRCRWLEVDIVIGNALVNMYAKLGSIDC 403

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV--DFAVYSQVSNFY 630
           A  + +Q P   D + W++L+     +G         N++ E   +  +   +  +   Y
Sbjct: 404 ARAVFEQLP-SRDVISWNTLITGYAQNGLASEAIDAYNMMEEGRTIVPNQGTWVSILPAY 462

Query: 631 SEIGEFEVSMQIRETALARKLTRDI 655
           S +G  +  M+I    +   L  D+
Sbjct: 463 SHVGALQQGMKIHGRLIKNCLFLDV 487



 Score =  105 bits (262), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 59/248 (23%), Positives = 132/248 (53%), Gaps = 2/248 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +++I   N  ++ + K G ++ A+ +F+++P+RD++++N LI+G  +     +A+  Y+ 
Sbjct: 382 EVDIVIGNALVNMYAKLGSIDCARAVFEQLPSRDVISWNTLITGYAQNGLASEAIDAYNM 441

Query: 101 MVS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           M     I  +  T+ S+L   S+ G   +G++IH R++     L++++ + L+D+Y + G
Sbjct: 442 MEEGRTIVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCG 501

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A+ LF E+P+     WN ++ +       ++ L+++  M+A+GV+ + ++F  ++ 
Sbjct: 502 RLEDAMSLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLS 561

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DV 278
            CS   L+DE +     + K   +  N+     +VD +   G L +A      +P+  D 
Sbjct: 562 ACSHSGLVDEAQWCFDTMQKEYRIKPNLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADA 621

Query: 279 ISWNSIVS 286
             W ++++
Sbjct: 622 SIWGTLLA 629



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 52/188 (27%), Positives = 88/188 (46%), Gaps = 13/188 (6%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQ-LNIYSSNRTIDDFVKSGHLNSAK 64
           ++P   T  ++ P  + +  L   + +      N   L+++ +   ID + K G L  A 
Sbjct: 448 IVPNQGTWVSILPAYSHVGALQQGMKIHGRLIKNCLFLDVFVATCLIDMYGKCGRLEDAM 507

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            LF E+P    V +N +IS  G   H ++AL L+ +M + G+K    TF S+LS CS++G
Sbjct: 508 SLFYEIPQETSVPWNAIISSLGIHGHGEKALQLFKDMRADGVKADHITFVSLLSACSHSG 567

Query: 125 FYTEG------IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
              E       +Q   R+       NL     +VDL+ R G   +A +L   +P + + +
Sbjct: 568 LVDEAQWCFDTMQKEYRIKP-----NLKHYGCMVDLFGRAGYLEKAYNLVSNMPIQADAS 622

Query: 178 TWNLMLRA 185
            W  +L A
Sbjct: 623 IWGTLLAA 630


>gi|225438557|ref|XP_002276001.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Vitis vinifera]
          Length = 825

 Score =  317 bits (813), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 183/625 (29%), Positives = 341/625 (54%), Gaps = 11/625 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y     ID + K+G++  A+ +FD++  +  VT+  +I+G  K      +L L+ +M 
Sbjct: 163 DVYVGTSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMR 222

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +       SSVLS CS   F   G QIH  VL  G  +++ + + L+D Y +     
Sbjct: 223 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 282

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               LFD++  +N+ +W  M+  + + S   E ++++ +M   G +P+G +   ++  C 
Sbjct: 283 AGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 342

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L++G+Q+H++ IK   ++ + FV N L+D Y+    LI+AKK FD +   +VIS+N
Sbjct: 343 SREALEQGRQVHAYTIKAN-LESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYN 401

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y+  + + +ALELF  M++    PS+ +FV  L  ++    +   KQIHG + K 
Sbjct: 402 AMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKF 461

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     +   SAL D+Y KC+ ++ +  VFE    + +   N++          ++A+++
Sbjct: 462 GVSL-DLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKL 520

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLM 459
           +  +       +E T      A  ++A++NL S R     H   +K G +    V+ +L+
Sbjct: 521 YSTLQFSRQKPNEFTF-----AALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALV 575

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG IE + ++F      +VVC+ S+++ ++++G   EAL M   M++ G+ P+ V
Sbjct: 576 DMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYV 635

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL+ C+H+G V++G   FNSM   +GI    +HY+C++ +LGR+G L +A+E +++
Sbjct: 636 TFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEK 694

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P     ++W SLL +CR+ GN  +G+  A + +  +P D   Y  +SN ++  G +   
Sbjct: 695 MPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADV 754

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
            ++R+   + ++ ++ G S IEVN+
Sbjct: 755 KKVRDRMDSSEVVKEPGRSWIEVNN 779



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 138/562 (24%), Positives = 288/562 (51%), Gaps = 9/562 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY-D 99
           Q + + +N  I+   KS  +++A+ +FD+MP ++++T++ ++S   +  + ++AL ++ D
Sbjct: 59  QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVD 118

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
                G   +    +SV+  C+  G   +G Q+H  V+  GF  ++Y+G+ L+D Y + G
Sbjct: 119 LQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNG 178

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD+L E+   TW  ++  + +  R    L ++ +M+   V P+      ++ 
Sbjct: 179 NIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLS 238

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS+   L+ GKQ+H++V++ G  ++++ V N L+DFY+ C  +   +K FD + V ++I
Sbjct: 239 ACSMLEFLEGGKQIHAYVLRRG-TEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNII 297

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +++S Y      ++A++LF  M     +P   +    L        +  G+Q+H Y 
Sbjct: 298 SWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYT 357

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K   +     V++ L DMY K N++  +  VF+    +++   N+++        + +A
Sbjct: 358 IKANLESDEF-VKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEA 416

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASA-NLGSCRLLHCCAIKSGFESNIAVSCSL 458
           +E+F  M    + L   +L T +  L VSAS   L   + +H   IK G   ++    +L
Sbjct: 417 LELFHEM---RVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKFGVSLDLFAGSAL 473

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D YS+C +++ +  VFE++   ++V + ++  GY+++    EAL +   +      P++
Sbjct: 474 IDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNE 533

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            TF  ++   ++   ++ GQ   N +  + G+D      + ++DM  + G +++A ++  
Sbjct: 534 FTFAALITAASNLASLRHGQQFHNQLVKM-GLDFCPFVTNALVDMYAKCGSIEEARKMFN 592

Query: 579 QTPGGGDCMMWSSLLRSCRVHG 600
            +    D + W+S++ +   HG
Sbjct: 593 SSI-WRDVVCWNSMISTHAQHG 613



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 131/512 (25%), Positives = 257/512 (50%), Gaps = 13/512 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M  T ++P    ++++   C+ +  L     + +Y  +   ++++   N  ID + K   
Sbjct: 221 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNR 280

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + + +KLFD+M  ++++++  +ISG  +     +A+ L+ EM   G K      +SVL+ 
Sbjct: 281 VKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTS 340

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C +     +G Q+H   +      + ++ + L+D+Y +    + A  +FD + E+N+ ++
Sbjct: 341 CGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISY 400

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  +    +  E L ++++M+     P+ L+F  ++   +    L+  KQ+H  +IK
Sbjct: 401 NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIK 460

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G V +++F  +AL+D YS C  + +A+  F+ +   D++ WN++   Y  +    +AL+
Sbjct: 461 FG-VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 519

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+  +Q  R++P+  +F   +  AS   ++  G+Q H  + K+G D     V +AL DMY
Sbjct: 520 LYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF-VTNALVDMY 578

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  IE +  +F S+  R + C NS++++    G  ++A+ MF  M+ EGI  + VT  
Sbjct: 579 AKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFV 638

Query: 420 TTLKALSVSASANLGSCRL--LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
             L A S +     G      +    IK G E + A   SL+    R G +  + +  EK
Sbjct: 639 AVLSACSHAGRVEDGLNHFNSMPGFGIKPGTE-HYACVVSLL---GRSGKLFEAKEFIEK 694

Query: 478 IP-SPNVVCFTSIMNGYSRNG---MGREALDM 505
           +P  P  + + S+++     G   +G+ A +M
Sbjct: 695 MPIEPAAIVWRSLLSACRIAGNVELGKYAAEM 726



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 114/402 (28%), Positives = 196/402 (48%), Gaps = 6/402 (1%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA 72
           T++  +C S   L     + +Y  + N + + +  N  ID + KS  L  AKK+FD M  
Sbjct: 335 TSVLTSCGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAE 394

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           +++++YN +I G        +AL L+ EM       S  TF S+L V ++        QI
Sbjct: 395 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQI 454

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  ++  G  L+L+ GS L+D+Y +      A  +F+E+ E+++  WN M   + +    
Sbjct: 455 HGLIIKFGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLEN 514

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           +E L++Y+ ++    +PN  +F  ++   S    L  G+Q H+ ++K+G +D   FV NA
Sbjct: 515 EEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG-LDFCPFVTNA 573

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           LVD Y+ CGS+ EA+K F+     DV+ WNS++S +A +    +AL +F  M     +P+
Sbjct: 574 LVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPN 633

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +FV  L+  S  G V  G      +   G   G+ H  + +  + G+   +  +    
Sbjct: 634 YVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHY-ACVVSLLGRSGKLFEAKEFI 692

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           E  P   +E    +  SLL +  I   VE+  +  +  I  D
Sbjct: 693 EKMP---IEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTD 731



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 112/463 (24%), Positives = 227/463 (49%), Gaps = 7/463 (1%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH +++  G   + ++ + L+++  +      A  +FD++P +NL TW+ M+  + +   
Sbjct: 49  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 108

Query: 192 PDEVLRMY-NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            +E L ++ +  +  G  PN      ++R C+   ++++G QLH  V++ G+ D +++V 
Sbjct: 109 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGF-DQDVYVG 167

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +L+DFYS  G++ EA+  FD +     ++W +I++ Y        +LELF +M+     
Sbjct: 168 TSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVV 227

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P        L+  S    +  GKQIH YV + G +   V V + L D Y KCN +++   
Sbjct: 228 PDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM-DVSVVNVLIDFYTKCNRVKAGRK 286

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F+    +++    ++++  + +    +A+++FG M   G   D    ++ L   S  + 
Sbjct: 287 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT--SCGSR 344

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
             L   R +H   IK+  ES+  V   L+D Y++   +  + +VF+ +   NV+ + +++
Sbjct: 345 EALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMI 404

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            GYS      EAL++   M  R   P  +TF+ +L G + S    E     + +   +G+
Sbjct: 405 EGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLL-GVSASLFALELSKQIHGLIIKFGV 463

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             D    S +ID+  +   +  A  + ++     D ++W+++ 
Sbjct: 464 SLDLFAGSALIDVYSKCSYVKDARHVFEEM-NEKDIVVWNAMF 505



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +Q+   RP  R F   L  +     +   K IHG +   G       + + L ++  K +
Sbjct: 18  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGL-QSDTFLANILINVCSKSD 76

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF-GFMVDEGIGLDEVTLSTTL 422
            ++++  VF+  P ++L   +S+++     G  ++A+ +F       G   +E  L++ +
Sbjct: 77  RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVI 136

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           +A +       G+   LH   ++SGF+ ++ V  SL+D YS+ G+IE +  VF+++    
Sbjct: 137 RACTQLGVVEKGA--QLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKT 194

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
            V +T+I+ GY++ G    +L++   M +  ++PD+     VL+ C+    ++ G+ + +
Sbjct: 195 AVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI-H 253

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +     G + D    + +ID   +   +    +L  Q
Sbjct: 254 AYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQ 290



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 87/160 (54%), Gaps = 7/160 (4%)

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           +++H   I SG +S+  ++  L++  S+   ++ +  VF+K+P  N++ ++S+++ YS+ 
Sbjct: 47  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 106

Query: 497 GMGREALDMLEVMIQR--GLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDAD 553
           G   EAL M+ V +QR  G  P++     V+  C   G+V++G QL    ++S  G D D
Sbjct: 107 GYSEEAL-MVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRS--GFDQD 163

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
               + +ID   + G +++A  +  Q       + W++++
Sbjct: 164 VYVGTSLIDFYSKNGNIEEARLVFDQL-SEKTAVTWTTII 202


>gi|30794008|gb|AAP40452.1| unknown protein [Arabidopsis thaliana]
          Length = 890

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 201/635 (31%), Positives = 341/635 (53%), Gaps = 28/635 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ++ + K G   +  K+FD +  R+ V++N LIS    F   + AL  +  M+   +
Sbjct: 136 ANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV 195

Query: 107 KESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + S+ T  SV++ CSN     EG+    Q+H   L  G  LN +I + LV +Y ++G   
Sbjct: 196 EPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLA 253

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  L      R+L TWN +L + C+  +  E L    +M  EGVEP+  +   ++  CS
Sbjct: 254 SSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 313

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              +L  GK+LH++ +K G +D N FV +ALVD Y  C  ++  ++ FD +    +  WN
Sbjct: 314 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWN 373

Query: 283 SIVSIYADYDLIFDALELFFRMQ----LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ++++ Y+  +   +AL LF  M+    L     ++   V       R+G     + IHG+
Sbjct: 374 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA---CVRSGAFSRKEAIHGF 430

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V K G D     VQ+ L DMY +   I+ ++ +F     R L   N+++T  + S + +D
Sbjct: 431 VVKRGLDRDRF-VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489

Query: 399 AVEMFGFM------VDEG-----IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           A+ +   M      V +G     +  + +TL T L   S +A + L   + +H  AIK+ 
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP--SCAALSALAKGKEIHAYAIKNN 547

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
             +++AV  +L+D Y++CG +++S +VF++IP  NV+ +  I+  Y  +G G+EA+D+L 
Sbjct: 548 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLR 607

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
           +M+ +G+ P++VTF+ V A C+HSGMV EG  +F  MK  YG++    HY+C++D+LGRA
Sbjct: 608 MMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRA 667

Query: 568 GILDKAEELLQQTPGG-GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           G + +A +L+   P        WSSLL + R+H N  IG   A  L++LEP   + Y  +
Sbjct: 668 GRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 727

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           +N YS  G ++ + ++R     + + ++ G S IE
Sbjct: 728 ANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 251/529 (47%), Gaps = 28/529 (5%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSP 150
           ++A+  Y +M+  GIK     F ++L   ++      G QIH  V   G+G++ + + + 
Sbjct: 79  REAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANT 138

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV+LY + G       +FD + ERN  +WN ++ + C   + +  L  +  M  E VEP+
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPS 198

Query: 211 GLSFCYMVRGCS-----IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
             +   +V  CS      G+++  GKQ+H++ ++ G  ++N F+ N LV  Y   G L  
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMM--GKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLAS 254

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           +K         D+++WN+++S     + + +ALE    M L    P   +    L   S 
Sbjct: 255 SKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSH 314

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  GK++H Y  K G    +  V SAL DMY  C  + S   VF+    R +   N+
Sbjct: 315 LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNA 374

Query: 386 LMTSLLHSGNIKDAVEMF-GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           ++     + + K+A+ +F G     G+  +  T++  + A   S +        +H   +
Sbjct: 375 MIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA--FSRKEAIHGFVV 432

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           K G + +  V  +LMD YSR G I+++ ++F K+   ++V + +++ GY  +    +AL 
Sbjct: 433 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492

Query: 505 MLEVM------IQRG-----LIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSMKSVYGIDA 552
           +L  M      + +G     L P+ +T + +L  C   S + K  ++   ++K+   +  
Sbjct: 493 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLAT 550

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           D    S ++DM  + G L  + ++  Q P   + + W+ ++ +  +HGN
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 234/498 (46%), Gaps = 25/498 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLL----DSYCQPNPQLNIYSSNRTIDDFVK 56
           ML   + P   T+ ++   C+++ P+   L++     +Y     +LN +  N  +  + K
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNL-PMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGK 248

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
            G L S+K L      RD+VT+N ++S   +     +AL    EMV  G++    T SSV
Sbjct: 249 LGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           L  CS+      G ++H   L  G    N ++GS LVD+Y      +    +FD + +R 
Sbjct: 309 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 368

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +  WN M+  + +     E L ++  M ++ G+  N  +   +V  C         + +H
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
             V+K G +D + FV N L+D YS  G +  A + F  +   D+++WN++++ Y   +  
Sbjct: 429 GFVVKRG-LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487

Query: 295 FDALELFFRMQ-LCRK----------RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-- 341
            DAL L  +MQ L RK          +P+  + +  L   +    +  GK+IH Y  K  
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 547

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           L  D   V V SAL DMY KC  ++ S  VF+  P +++   N ++ +    GN ++A++
Sbjct: 548 LATD---VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +   M+ +G+  +EVT  +   A S S   + G  R+ +      G E +      ++D 
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG-LRIFYVMKPDYGVEPSSDHYACVVDL 663

Query: 462 YSRCGHIELSHQVFEKIP 479
             R G I+ ++Q+   +P
Sbjct: 664 LGRAGRIKEAYQLMNMMP 681



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 204/427 (47%), Gaps = 15/427 (3%)

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+   W  +LR+    +   E +  Y  M   G++P+  +F  +++  +    ++ GKQ+
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+HV K G+   ++ VAN LV+ Y  CG      K FD I   + +SWNS++S    ++ 
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASR---TGNVYFGKQIHGYVTKLGFDHGSVH 350
              ALE F  M      PS  + V  +   S       +  GKQ+H Y    G   G ++
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY----GLRKGELN 235

Query: 351 --VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             + + L  MYGK   + SS  +  S  GR L   N++++SL  +  + +A+E    MV 
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGH 467
           EG+  DE T+S+ L A S       G  + LH  A+K+G  + N  V  +L+D Y  C  
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTG--KELHAYALKNGSLDENSFVGSALVDMYCNCKQ 353

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR-GLIPDKVTFLCVLA 526
           +    +VF+ +    +  + +++ GYS+N   +EAL +   M +  GL+ +  T   V+ 
Sbjct: 354 VLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVP 413

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C  SG     + +   +    G+D DR   + ++DM  R G +D A  +  +     D 
Sbjct: 414 ACVRSGAFSRKEAIHGFVVK-RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDL 471

Query: 587 MMWSSLL 593
           + W++++
Sbjct: 472 VTWNTMI 478


>gi|30694644|ref|NP_191302.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218525905|sp|Q7Y211.2|PP285_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g57430, chloroplastic; Flags: Precursor
 gi|332646133|gb|AEE79654.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 890

 Score =  317 bits (812), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 201/635 (31%), Positives = 341/635 (53%), Gaps = 28/635 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ++ + K G   +  K+FD +  R+ V++N LIS    F   + AL  +  M+   +
Sbjct: 136 ANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV 195

Query: 107 KESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + S+ T  SV++ CSN     EG+    Q+H   L  G  LN +I + LV +Y ++G   
Sbjct: 196 EPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLA 253

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  L      R+L TWN +L + C+  +  E L    +M  EGVEP+  +   ++  CS
Sbjct: 254 SSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 313

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              +L  GK+LH++ +K G +D N FV +ALVD Y  C  ++  ++ FD +    +  WN
Sbjct: 314 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWN 373

Query: 283 SIVSIYADYDLIFDALELFFRMQ----LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ++++ Y+  +   +AL LF  M+    L     ++   V       R+G     + IHG+
Sbjct: 374 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA---CVRSGAFSRKEAIHGF 430

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V K G D     VQ+ L DMY +   I+ ++ +F     R L   N+++T  + S + +D
Sbjct: 431 VVKRGLDRDRF-VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 489

Query: 399 AVEMFGFM------VDEG-----IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           A+ +   M      V +G     +  + +TL T L   S +A + L   + +H  AIK+ 
Sbjct: 490 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP--SCAALSALAKGKEIHAYAIKNN 547

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
             +++AV  +L+D Y++CG +++S +VF++IP  NV+ +  I+  Y  +G G+EA+D+L 
Sbjct: 548 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLR 607

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
           +M+ +G+ P++VTF+ V A C+HSGMV EG  +F  MK  YG++    HY+C++D+LGRA
Sbjct: 608 MMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRA 667

Query: 568 GILDKAEELLQQTPGG-GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           G + +A +L+   P        WSSLL + R+H N  IG   A  L++LEP   + Y  +
Sbjct: 668 GRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 727

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           +N YS  G ++ + ++R     + + ++ G S IE
Sbjct: 728 ANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 762



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 133/529 (25%), Positives = 251/529 (47%), Gaps = 28/529 (5%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSP 150
           ++A+  Y +M+  GIK     F ++L   ++      G QIH  V   G+G++ + + + 
Sbjct: 79  REAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANT 138

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV+LY + G       +FD + ERN  +WN ++ + C   + +  L  +  M  E VEP+
Sbjct: 139 LVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPS 198

Query: 211 GLSFCYMVRGCS-----IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
             +   +V  CS      G+++  GKQ+H++ ++ G  ++N F+ N LV  Y   G L  
Sbjct: 199 SFTLVSVVTACSNLPMPEGLMM--GKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLAS 254

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           +K         D+++WN+++S     + + +ALE    M L    P   +    L   S 
Sbjct: 255 SKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSH 314

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  GK++H Y  K G    +  V SAL DMY  C  + S   VF+    R +   N+
Sbjct: 315 LEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNA 374

Query: 386 LMTSLLHSGNIKDAVEMF-GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           ++     + + K+A+ +F G     G+  +  T++  + A   S +        +H   +
Sbjct: 375 MIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGA--FSRKEAIHGFVV 432

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           K G + +  V  +LMD YSR G I+++ ++F K+   ++V + +++ GY  +    +AL 
Sbjct: 433 KRGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALL 492

Query: 505 MLEVM------IQRG-----LIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSMKSVYGIDA 552
           +L  M      + +G     L P+ +T + +L  C   S + K  ++   ++K+   +  
Sbjct: 493 LLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLAT 550

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           D    S ++DM  + G L  + ++  Q P   + + W+ ++ +  +HGN
Sbjct: 551 DVAVGSALVDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 598



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 234/498 (46%), Gaps = 25/498 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLL----DSYCQPNPQLNIYSSNRTIDDFVK 56
           ML   + P   T+ ++   C+++ P+   L++     +Y     +LN +  N  +  + K
Sbjct: 190 MLDENVEPSSFTLVSVVTACSNL-PMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGK 248

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
            G L S+K L      RD+VT+N ++S   +     +AL    EMV  G++    T SSV
Sbjct: 249 LGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 308

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           L  CS+      G ++H   L  G    N ++GS LVD+Y      +    +FD + +R 
Sbjct: 309 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 368

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +  WN M+  + +     E L ++  M ++ G+  N  +   +V  C         + +H
Sbjct: 369 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 428

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
             V+K G +D + FV N L+D YS  G +  A + F  +   D+++WN++++ Y   +  
Sbjct: 429 GFVVKRG-LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 487

Query: 295 FDALELFFRMQ-LCRK----------RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-- 341
            DAL L  +MQ L RK          +P+  + +  L   +    +  GK+IH Y  K  
Sbjct: 488 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 547

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           L  D   V V SAL DMY KC  ++ S  VF+  P +++   N ++ +    GN ++A++
Sbjct: 548 LATD---VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 604

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +   M+ +G+  +EVT  +   A S S   + G  R+ +      G E +      ++D 
Sbjct: 605 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG-LRIFYVMKPDYGVEPSSDHYACVVDL 663

Query: 462 YSRCGHIELSHQVFEKIP 479
             R G I+ ++Q+   +P
Sbjct: 664 LGRAGRIKEAYQLMNMMP 681



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 204/427 (47%), Gaps = 15/427 (3%)

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+   W  +LR+    +   E +  Y  M   G++P+  +F  +++  +    ++ GKQ+
Sbjct: 60  RSPEWWIDLLRSKVRSNLLREAVLTYVDMIVLGIKPDNYAFPALLKAVADLQDMELGKQI 119

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+HV K G+   ++ VAN LV+ Y  CG      K FD I   + +SWNS++S    ++ 
Sbjct: 120 HAHVYKFGYGVDSVTVANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEK 179

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASR---TGNVYFGKQIHGYVTKLGFDHGSVH 350
              ALE F  M      PS  + V  +   S       +  GKQ+H Y    G   G ++
Sbjct: 180 WEMALEAFRCMLDENVEPSSFTLVSVVTACSNLPMPEGLMMGKQVHAY----GLRKGELN 235

Query: 351 --VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             + + L  MYGK   + SS  +  S  GR L   N++++SL  +  + +A+E    MV 
Sbjct: 236 SFIINTLVAMYGKLGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVL 295

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGH 467
           EG+  DE T+S+ L A S       G  + LH  A+K+G  + N  V  +L+D Y  C  
Sbjct: 296 EGVEPDEFTISSVLPACSHLEMLRTG--KELHAYALKNGSLDENSFVGSALVDMYCNCKQ 353

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR-GLIPDKVTFLCVLA 526
           +    +VF+ +    +  + +++ GYS+N   +EAL +   M +  GL+ +  T   V+ 
Sbjct: 354 VLSGRRVFDGMFDRKIGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVP 413

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C  SG     + +   +    G+D DR   + ++DM  R G +D A  +  +     D 
Sbjct: 414 ACVRSGAFSRKEAIHGFVVK-RGLDRDRFVQNTLMDMYSRLGKIDIAMRIFGKME-DRDL 471

Query: 587 MMWSSLL 593
           + W++++
Sbjct: 472 VTWNTMI 478


>gi|356524187|ref|XP_003530713.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/627 (29%), Positives = 338/627 (53%), Gaps = 7/627 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYD 99
           Q +I+     I+ ++     + AK +FD M    ++  +N L++G  K     +AL L++
Sbjct: 35  QNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFE 94

Query: 100 EMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +++ +  +K  + T+ SVL  C     Y  G  IH  ++  G  +++ +GS LV +Y + 
Sbjct: 95  KLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMIHTCLVKTGLMMDIVVGSSLVGMYAKC 154

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
               +A+ LF+E+PE+++A WN ++  + +     E L  +  M+  G EPN ++    +
Sbjct: 155 NAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKEALEYFGLMRRFGFEPNSVTITTAI 214

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+  + L+ G ++H  +I  G++ ++ F+++ALVD Y  CG L  A + F+ +P   V
Sbjct: 215 SSCARLLDLNRGMEIHEELINSGFL-LDSFISSALVDMYGKCGHLEMAIEVFEQMPKKTV 273

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ++WNS++S Y         ++LF RM     +P++ +    +   SR+  +  GK +HGY
Sbjct: 274 VAWNSMISGYGLKGDSISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGY 333

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             +       V + S+L D+Y KC  +E +  +F+  P   +   N +++  +  G + +
Sbjct: 334 TIRNRI-QSDVFINSSLMDLYFKCGKVELAENIFKLIPKSKVVSWNVMISGYVAEGKLFE 392

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M    +  D +T ++ L A S  A+   G    +H   I+   ++N  V  +L
Sbjct: 393 ALGLFSEMRKSYVEPDAITFTSVLTACSQLAALEKG--EEIHNLIIEKKLDNNEVVMGAL 450

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++CG ++ +  VF+ +P  ++V +TS++  Y  +G    AL++   M+Q  + PD+
Sbjct: 451 LDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGQAYVALELFAEMLQSNMKPDR 510

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTFL +L+ C H+G+V EG   FN M +VYGI    +HYSC+ID+LGRAG L +A E+LQ
Sbjct: 511 VTFLAILSACGHAGLVDEGCYYFNQMVNVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQ 570

Query: 579 QTPG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           Q P    D  + S+L  +CR+H N  +G  +A  L++ +P D + Y  +SN Y+   +++
Sbjct: 571 QNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWD 630

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
               +R       L ++ G S IE+N 
Sbjct: 631 EVRVVRSKMKELGLKKNPGCSWIEINQ 657



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 251/492 (51%), Gaps = 8/492 (1%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER- 174
           +L  C N+    +G  IH +V++LG   ++++   L++LY+       A  +FD +    
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKNLINLYLSCHLYDHAKCVFDNMENPC 68

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ WN ++  + +     E L ++ K +    ++P+  ++  +++ C        GK +
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVLKACGGLYKYVLGKMI 128

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+ ++K G + ++I V ++LV  Y+ C +  +A   F+ +P  DV  WN+++S Y     
Sbjct: 129 HTCLVKTGLM-MDIVVGSSLVGMYAKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGN 187

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +ALE F  M+     P+  +    ++  +R  ++  G +IH  +   GF   S  + S
Sbjct: 188 FKEALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF-ISS 246

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL DMYGKC  +E ++ VFE  P +++   NS+++     G+    +++F  M +EG+  
Sbjct: 247 ALVDMYGKCGHLEMAIEVFEQMPKKTVVAWNSMISGYGLKGDSISCIQLFKRMYNEGVKP 306

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
              TLS+ +  +  S SA L   + +H   I++  +S++ ++ SLMD Y +CG +EL+  
Sbjct: 307 TLTTLSSLI--MVCSRSARLLEGKFVHGYTIRNRIQSDVFINSSLMDLYFKCGKVELAEN 364

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F+ IP   VV +  +++GY   G   EAL +   M +  + PD +TF  VL  C+    
Sbjct: 365 IFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVEPDAITFTSVLTACSQLAA 424

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +++G+ + N +     +D +      ++DM  + G +D+A  + +  P   D + W+S++
Sbjct: 425 LEKGEEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMI 482

Query: 594 RSCRVHGNEIIG 605
            +   HG   + 
Sbjct: 483 TAYGSHGQAYVA 494


>gi|357495039|ref|XP_003617808.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519143|gb|AET00767.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 811

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 340/620 (54%), Gaps = 4/620 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++++ N  ++ +V+S  L  A KLFDEMP  + +++  L  G  +     QAL+    +
Sbjct: 68  LDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQFHQALHFILRI 127

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G + +   F+++L +  +         +H  V  LG   + ++G+ L+D Y   G  
Sbjct: 128 FKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGHHADAFVGTALIDAYSVRGNV 187

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD++  +++ +W  M+  + E    +E L+++N+M+  G +PN  +    ++ C
Sbjct: 188 DVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPNNFTISGALKSC 247

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                 + GK +H   +K G  D ++FV  AL++ Y+  G +I+A++ F+ +P  D+I W
Sbjct: 248 LGLEAFNVGKSVHGCALK-GCYDHDLFVGIALLELYAKSGEIIDAQRLFEEMPKTDLIPW 306

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           + +++ YA  D   +AL+LF RM+     P+  +F   L   + + ++  GKQIH  V K
Sbjct: 307 SLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLDLGKQIHSCVLK 366

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G +  +V V +A+ D+Y KC  IE+S+ +FE  P R+    N+++   +  G+ + A+ 
Sbjct: 367 FGLN-SNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVGYVQLGDGERAMN 425

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M++  +   EVT S+ L+A +  A+   G    +H   IK+ +  +  V+ SL+D 
Sbjct: 426 LFTHMLEHDMQPTEVTYSSVLRASASLAALEPG--LQIHSLTIKTMYNKDTVVANSLIDM 483

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG I  +   F+K+   + V + +++ GYS +GM  EAL++ ++M      P+K+TF
Sbjct: 484 YAKCGRINDARLTFDKMNKRDEVSWNAMICGYSMHGMSMEALNLFDMMQHTDCKPNKLTF 543

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL+ C+++G++ +GQ  F SM   Y I    +HY+CM+ +LGR G  D+A +L+ +  
Sbjct: 544 VGVLSACSNAGLLYKGQAHFESMSKDYDIKPCIEHYTCMVWLLGRLGRFDEAMKLIGEIA 603

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
                M+W +LL +C +H    +GR  A  ++E+EP D A +  +SN Y+  G ++    
Sbjct: 604 YQPSVMVWRALLGACVIHKKVDLGRVCAQHVLEMEPHDDATHVLLSNMYATAGRWDNVAF 663

Query: 642 IRETALARKLTRDIGHSLIE 661
           +R+    +K+ ++ G S +E
Sbjct: 664 VRKYMQKKKVRKEPGLSWVE 683



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 137/529 (25%), Positives = 253/529 (47%), Gaps = 18/529 (3%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           RD    + L+  C    H +    L     +H +++          +  N      G  +
Sbjct: 8   RDSTKLSQLLHQCRNIHHQQCLSALDSHSYAHMLQQ----------IIRNGADPIAGKHL 57

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           HC +L  G  L+L+  + L++ Y++      A  LFDE+P+ N  ++  + + +    + 
Sbjct: 58  HCHILKRGTSLDLFAQNILLNFYVQSNSLQDASKLFDEMPQTNTISFVTLAQGYSRDHQF 117

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
            + L    ++  EG E N   F  +++      L      LH+ V KLG    + FV  A
Sbjct: 118 HQALHFILRIFKEGHEVNPFVFTTLLKLLVSMDLAHLCWTLHACVYKLGH-HADAFVGTA 176

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L+D YS  G++  A+  FD I   D++SW  +V+ YA+     ++L+LF +M++   +P+
Sbjct: 177 LIDAYSVRGNVDVARHVFDDICCKDMVSWTGMVACYAENCFYEESLQLFNQMRIMGYKPN 236

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +    L           GK +HG   K  +DH  + V  AL ++Y K   I  +  +F
Sbjct: 237 NFTISGALKSCLGLEAFNVGKSVHGCALKGCYDH-DLFVGIALLELYAKSGEIIDAQRLF 295

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           E  P   L   + ++     S   K+A+++F  M    +  +  T ++ L+A + S S +
Sbjct: 296 EEMPKTDLIPWSLMIARYAQSDRSKEALDLFLRMRQTSVVPNNFTFASVLQACASSVSLD 355

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
           LG  + +H C +K G  SN+ VS ++MD Y++CG IE S ++FE++P  N V + +I+ G
Sbjct: 356 LG--KQIHSCVLKFGLNSNVFVSNAIMDVYAKCGEIENSMKLFEELPDRNDVTWNTIIVG 413

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGID 551
           Y + G G  A+++   M++  + P +VT+  VL        ++ G Q+   ++K++Y  +
Sbjct: 414 YVQLGDGERAMNLFTHMLEHDMQPTEVTYSSVLRASASLAALEPGLQIHSLTIKTMY--N 471

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            D    + +IDM  + G ++ A     +     D + W++++    +HG
Sbjct: 472 KDTVVANSLIDMYAKCGRINDARLTFDKM-NKRDEVSWNAMICGYSMHG 519


>gi|52076596|dbj|BAD45498.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|218187337|gb|EEC69764.1| hypothetical protein OsI_00012 [Oryza sativa Indica Group]
          Length = 810

 Score =  317 bits (811), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 182/626 (29%), Positives = 333/626 (53%), Gaps = 13/626 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  NI+S N  +  +  SG L +A+ LF   P R+  T+ +++           AL L+ 
Sbjct: 70  PHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFR 129

Query: 100 EMVSHGIKESASTFSSVLSV--CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
            M+  G+     T ++VL++  C+    +   I+        G   ++++ + L+D Y +
Sbjct: 130 AMLGEGVIPDRVTVTTVLNLPGCTVPSLHPFAIK-------FGLDTHVFVCNTLLDAYCK 182

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +F E+ +++  T+N M+    +     + L+++  M+  G+     +F  +
Sbjct: 183 HGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSI 242

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +   +    L  G Q+H+ V++   V +N+FV N+L+DFYS C  L + ++ FD +P  D
Sbjct: 243 LTVAAGMAHLLLGHQVHALVLRSTSV-LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERD 301

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +S+N I++ YA        L LF  MQ       +  +   L+ A    +V+ GKQIH 
Sbjct: 302 NVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHA 361

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +  LG     + + +AL DMY KC +++++ + F +   +S     +L+T  + +G  +
Sbjct: 362 QLVLLGLASEDL-LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHE 420

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+++F  M   G+  D  T S+ +KA S  A   LG  R LH   I+SG++S++     
Sbjct: 421 EALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG--RQLHSYLIRSGYKSSVFSGSV 478

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++CG ++ + + F+++P  N + + ++++ Y+  G  + A+ M E M+  G  PD
Sbjct: 479 LVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 538

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            VTFL VLA C+H+G+  E    F+ MK  Y I   ++HY+C+ID LGR G   + +++L
Sbjct: 539 SVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKML 598

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            + P   D ++W+S+L SCR+HGN+ + R  A+ L  +EP D   Y  +SN Y+  G++E
Sbjct: 599 VEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWE 658

Query: 638 VSMQIRETALARKLTRDIGHSLIEVN 663
            +  +++    R + ++ G+S +E+ 
Sbjct: 659 DAACVKKIMRDRGVRKESGYSWVEIK 684


>gi|225457769|ref|XP_002278218.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
 gi|302142763|emb|CBI19966.3| unnamed protein product [Vitis vinifera]
          Length = 1048

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 192/665 (28%), Positives = 351/665 (52%), Gaps = 7/665 (1%)

Query: 1    MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
            M  T +     T+ ++     S+  L+  LL+ +   +     N+Y  +  I+ + K   
Sbjct: 340  MWKTGVKSTRSTLGSVLSAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEK 399

Query: 60   LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
            + +AKK+FD +  R++V +N ++ G  +  +  + + L+ EM   G      T++S+LS 
Sbjct: 400  MEAAKKVFDALDERNLVLWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSA 459

Query: 120  CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            C+       G Q+H  ++   F  NL++ + LVD+Y + G    A   F+ +  R+  +W
Sbjct: 460  CACLECLEMGRQLHSFIIKHNFEYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSW 519

Query: 180  NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            N ++  + +    DE   M+ +M  +G+ P+ +S   ++ GC+    L++G+Q+H  ++K
Sbjct: 520  NAIIVGYVQEEDEDEAFNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVK 579

Query: 240  LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
             G +   ++  ++L+D Y  CG++  A+  F  +P   V+S N+I++ YA  DL+ +A++
Sbjct: 580  SG-LQTCLYAGSSLIDMYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDLV-EAID 637

Query: 300  LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            LF  MQ     PS  +F   L+  +    +  G+QIH  + K G  +    +  +L  MY
Sbjct: 638  LFQEMQNEGLNPSEITFASLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMY 697

Query: 360  GKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
                    +  +F E    +S     ++++    +G  ++A++++  M       D+ T 
Sbjct: 698  MNSQRKTDADILFSEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATF 757

Query: 419  STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
            ++ L+A S+ AS  LG  R++H      G +S+     +++D Y++CG ++ S QVFE++
Sbjct: 758  ASVLRACSILAS--LGDGRMIHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFEEM 815

Query: 479  PSPN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
             S N V+ + S++ G+++NG    AL + + M    + PD VTFL VL  C+H+G V EG
Sbjct: 816  GSKNDVISWNSMIVGFAKNGYAENALKIFDEMKHTRIRPDDVTFLGVLTACSHAGRVSEG 875

Query: 538  QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
            + +F+ M   Y I     H +CMID+LGR G L +AEE + +     + M+W++LL +CR
Sbjct: 876  REIFDIMVHSYKIVPRLDHCACMIDLLGRWGFLKEAEEFIDKLNFEPNAMIWATLLGACR 935

Query: 598  VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
            +HG++I GRR A  L+ELEP + + Y  +SN Y+  G ++    +R     + L +  G 
Sbjct: 936  IHGDDIRGRRAAEKLIELEPENSSPYVLLSNIYAASGNWDEVNSVRRAMREKGLRKLPGC 995

Query: 658  SLIEV 662
            S I V
Sbjct: 996  SWIVV 1000



 Score =  258 bits (658), Expect = 9e-66,   Method: Compositional matrix adjust.
 Identities = 157/539 (29%), Positives = 289/539 (53%), Gaps = 10/539 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L+ A  LF +MP  ++V +N++ISG  K     +A+  +  M   G+K + ST  SVL
Sbjct: 297 GRLDDACDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVL 356

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           S  ++      G+ +H + +  G   N+Y+GS L+++Y +      A  +FD L ERNL 
Sbjct: 357 SAIASLEALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLV 416

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            WN ML  + +     +V++++++M+  G  P+  ++  ++  C+    L+ G+QLHS +
Sbjct: 417 LWNAMLGGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFI 476

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           IK  + + N+FV N LVD Y+ CG+L EA++ F+FI   D +SWN+I+  Y   +   +A
Sbjct: 477 IKHNF-EYNLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEA 535

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
             +F RM L    P   S    L+  +    +  G+Q+H ++ K G     ++  S+L D
Sbjct: 536 FNMFRRMILDGIAPDEVSLASILSGCANLQALEQGEQVHCFLVKSGL-QTCLYAGSSLID 594

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  IE++  VF   P RS+   N+++     + ++ +A+++F  M +EG+   E+T
Sbjct: 595 MYVKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQN-DLVEAIDLFQEMQNEGLNPSEIT 653

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSG--FESNIAVSCSLMDAYSRCGHIELSHQVF 475
            ++ L A +     NLG  R +HC   K G  ++ +  +  SL+  Y        +  +F
Sbjct: 654 FASLLDACTGPYKLNLG--RQIHCLIQKRGLLYDGDF-LGVSLLVMYMNSQRKTDADILF 710

Query: 476 EKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
            +   P + + +T+I++G+++NG   EAL + + M +    PD+ TF  VL  C+    +
Sbjct: 711 SEFQYPKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASL 770

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            +G+++ + +  V G+D+D    S ++DM  + G +  + ++ ++     D + W+S++
Sbjct: 771 GDGRMIHSLIFHV-GLDSDELTGSAVVDMYAKCGDMKSSVQVFEEMGSKNDVISWNSMI 828



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 163/698 (23%), Positives = 315/698 (45%), Gaps = 111/698 (15%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D + K G++  A K F+++  RD++ +N ++S   +    +Q ++ +  + + G+  + 
Sbjct: 123 VDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQ 182

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T++ VLS C+       G Q+HC V+ +GF  N +    L+D+Y + G  V A  +FD 
Sbjct: 183 FTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDA 242

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + + +  +W  M+  + ++  P+E L+++  M+  G+ P+ ++F  ++  C     LD+ 
Sbjct: 243 VVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDA 302

Query: 231 KQLHSHVIKLGWVDVNIFVANAL--------VDFY------------SACGSLIEA---- 266
             L   +     V  N+ ++  +        +DF+            S  GS++ A    
Sbjct: 303 CDLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASL 362

Query: 267 -----------------------------------------KKSFDFIPVDDVISWNSIV 285
                                                    KK FD +   +++ WN+++
Sbjct: 363 EALNYGLLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAML 422

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
             YA        ++LF  M+ C   P   ++   L+  +    +  G+Q+H ++ K  F+
Sbjct: 423 GGYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQLHSFIIKHNFE 482

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           + ++ V++ L DMY KC  +E +   FE    R     N+++   +   +  +A  MF  
Sbjct: 483 Y-NLFVENTLVDMYAKCGALEEARQQFEFIRNRDNVSWNAIIVGYVQEEDEDEAFNMFRR 541

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAY 462
           M+ +GI  DEV+L++ L     S  ANL +      +HC  +KSG ++ +    SL+D Y
Sbjct: 542 MILDGIAPDEVSLASIL-----SGCANLQALEQGEQVHCFLVKSGLQTCLYAGSSLIDMY 596

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG IE +  VF  +PS +VV   +I+ GY++N +  EA+D+ + M   GL P ++TF 
Sbjct: 597 VKCGAIEAARYVFSCMPSRSVVSMNAIIAGYAQNDL-VEAIDLFQEMQNEGLNPSEITFA 655

Query: 523 CVLAGC----------------NHSGMVKEGQ-----LVFNSMKSVYGIDAD-----RQH 556
            +L  C                   G++ +G      L+   M S    DAD      Q+
Sbjct: 656 SLLDACTGPYKLNLGRQIHCLIQKRGLLYDGDFLGVSLLVMYMNSQRKTDADILFSEFQY 715

Query: 557 ------YSCMIDMLGRAGILDKAEELLQQ---TPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
                 ++ +I    + G  ++A +L Q+        D   ++S+LR+C +  +   GR 
Sbjct: 716 PKSTILWTAIISGHTQNGCSEEALQLYQEMHRNNARPDQATFASVLRACSILASLGDGRM 775

Query: 608 VANILMELE-PVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           + +++  +    D    S V + Y++ G+ + S+Q+ E
Sbjct: 776 IHSLIFHVGLDSDELTGSAVVDMYAKCGDMKSSVQVFE 813



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 219/447 (48%), Gaps = 40/447 (8%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH + L  GFG    +GS +VDLY + G    A   F++L +R++  WN +L  +     
Sbjct: 103 IHAQTLKFGFGSKGRLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGS 162

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
            ++V+  +  ++  GV PN  ++  ++  C+  + +D GKQ+H  VIK+G+ + N F   
Sbjct: 163 LEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGF-EFNSFCEG 221

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           +L+D YS CGSL++A+K FD +   D +SW ++++ Y    L  +AL++F  MQ     P
Sbjct: 222 SLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVP 281

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              +FV  +     T  V  G+                               ++ +  +
Sbjct: 282 DQVAFVTVI-----TACVGLGR-------------------------------LDDACDL 305

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F   P  ++   N +++  +  G   +A++ F  M   G+     TL + L A++   + 
Sbjct: 306 FVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIASLEAL 365

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           N G   L+H  AIK G  SN+ V  SL++ Y++C  +E + +VF+ +   N+V + +++ 
Sbjct: 366 NYG--LLVHAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALDERNLVLWNAMLG 423

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           GY++NG   + + +   M   G  PD+ T+  +L+ C     ++ G+ + +S    +  +
Sbjct: 424 GYAQNGYASKVMKLFSEMRGCGFWPDEFTYTSILSACACLECLEMGRQL-HSFIIKHNFE 482

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQ 578
            +    + ++DM  + G L++A +  +
Sbjct: 483 YNLFVENTLVDMYAKCGALEEARQQFE 509



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/244 (29%), Positives = 123/244 (50%), Gaps = 11/244 (4%)

Query: 304 MQLCRK---RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           +Q C++   R       + L  ASRT      K IH    K GF      + SA+ D+Y 
Sbjct: 74  LQQCQRIKIRHPFDETPQRLAQASRTS-----KTIHAQTLKFGFGSKG-RLGSAIVDLYA 127

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           KC  +E +   F     R +   NS+++     G+++  +  FG + + G+  ++ T + 
Sbjct: 128 KCGNVEFAAKAFNQLEKRDILAWNSVLSMYSRQGSLEQVIWCFGSLQNCGVSPNQFTYAI 187

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L + +     +LG  + +HC  IK GFE N     SL+D YS+CG +  + ++F+ +  
Sbjct: 188 VLSSCARLVDIDLG--KQVHCGVIKMGFEFNSFCEGSLIDMYSKCGSLVDARKIFDAVVD 245

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           P+ V +T+++ GY + G+  EAL + E M + GL+PD+V F+ V+  C   G + +   +
Sbjct: 246 PDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLGLVPDQVAFVTVITACVGLGRLDDACDL 305

Query: 541 FNSM 544
           F  M
Sbjct: 306 FVQM 309



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/363 (21%), Positives = 170/363 (46%), Gaps = 41/363 (11%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K +H+  +K G+      + +A+VD Y+ CG++  A K+F+ +   D+++WNS++S+Y+ 
Sbjct: 101 KTIHAQTLKFGFGSKG-RLGSAIVDLYAKCGNVEFAAKAFNQLEKRDILAWNSVLSMYSR 159

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
              +   +  F  +Q C   P+  ++   L+  +R  ++  GKQ+H  V K+GF+  S  
Sbjct: 160 QGSLEQVIWCFGSLQNCGVSPNQFTYAIVLSSCARLVDIDLGKQVHCGVIKMGFEFNSF- 218

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
            + +L DMY KC  +  +  +F++          +++   +  G  ++A+++F  M   G
Sbjct: 219 CEGSLIDMYSKCGSLVDARKIFDAVVDPDTVSWTAMIAGYVQVGLPEEALKVFEDMQKLG 278

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D+V   T +       +A +G  RL   C                            
Sbjct: 279 LVPDQVAFVTVI-------TACVGLGRLDDAC---------------------------- 303

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
              +F ++P+ NVV +  +++G+ + G   EA+D  + M + G+   + T   VL+    
Sbjct: 304 --DLFVQMPNTNVVAWNVMISGHVKRGCDIEAIDFFKNMWKTGVKSTRSTLGSVLSAIAS 361

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
              +  G LV ++     G++++    S +I+M  +   ++ A+++        + ++W+
Sbjct: 362 LEALNYGLLV-HAQAIKQGLNSNVYVGSSLINMYAKCEKMEAAKKVFDALD-ERNLVLWN 419

Query: 591 SLL 593
           ++L
Sbjct: 420 AML 422


>gi|449439005|ref|XP_004137278.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
 gi|449476583|ref|XP_004154777.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Cucumis sativus]
          Length = 816

 Score =  316 bits (810), Expect = 2e-83,   Method: Compositional matrix adjust.
 Identities = 187/629 (29%), Positives = 336/629 (53%), Gaps = 20/629 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I+ S + I+ +   G +  A+  FD++  +D+ T+N +IS   +  H   A+  ++E +
Sbjct: 74  SIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIGHFHAAVDCFNEFL 133

Query: 103 SHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           S    +S   TF  V+  C N     +G ++HC VL LGF  ++YI +  +  Y R G  
Sbjct: 134 STSFLQSDHYTFPPVIRACGNL---DDGRKVHCLVLKLGFECDVYIAASFIHFYSRFGFV 190

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A +LFD +  R++ TWN M+  F    +  E L ++++M+ + V  + ++   ++  C
Sbjct: 191 SLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSVSMDSVTISSLLPIC 250

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                +  G  +H + IKLG ++ ++FV NAL++ Y+  G L  A+  F+ + V D++SW
Sbjct: 251 VQLDDIISGVLIHVYAIKLG-LEFDLFVCNALINMYAKFGELRSAETIFNQMKVRDIVSW 309

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NS+++ +        AL ++ +M      P + + V   + A+  GN    + IHG+VT+
Sbjct: 310 NSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASVAAELGNFLSSRSIHGFVTR 369

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             +    + + +A+ DMY K   I+S+  VFE  P + +   NSL+T    +G   +A++
Sbjct: 370 RCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWNSLITGYSQNGLANEAID 429

Query: 402 MF-------GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
           ++       G + ++G  +  +T  + L AL     A        H   IK+    +I V
Sbjct: 430 VYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKA--------HGQLIKNFLYFDIFV 481

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           S  L+D Y +CG +  +  +F ++P  + V + +I++ +  +G G +A+ + + M   G+
Sbjct: 482 STCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLKAVKLFKEMQSEGV 541

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD +TF+ +L+ C+HSG+V EGQ  F  M+  YGI    +HY CM+D+ GRAG L+KA 
Sbjct: 542 KPDHITFVSLLSACSHSGLVDEGQWCFQLMQETYGIRPSLKHYGCMVDLFGRAGHLEKAF 601

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
             ++  P   D  +W +LL +CR+H N  + R V++ L+++E  +   Y  +SN Y+++G
Sbjct: 602 NFVKNMPVRPDVSVWGALLGACRIHENVELVRTVSDHLLKVESENVGYYVLLSNIYAKLG 661

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            +E   ++R  A  R L +  G S IEV+
Sbjct: 662 HWEGVDEVRSLARDRGLKKTPGWSSIEVD 690



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 126/456 (27%), Positives = 233/456 (51%), Gaps = 8/456 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           + ++Y +   I  + + G ++ A  LFD M  RD+ T+N +ISG        +AL ++DE
Sbjct: 171 ECDVYIAASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDE 230

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +   + T SS+L +C        G+ IH   + LG   +L++ + L+++Y + G 
Sbjct: 231 MRFKSVSMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEFDLFVCNALINMYAKFGE 290

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR- 219
              A  +F+++  R++ +WN +L AF +  +P   L +YNKM + GV P+ L+   +   
Sbjct: 291 LRSAETIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTLVSLASV 350

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
              +G  L   + +H  V +  W   +I + NA++D Y+  G +  A+K F+ +PV DVI
Sbjct: 351 AAELGNFL-SSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVI 409

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKR-PSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           SWNS+++ Y+   L  +A++++  M+      P+  ++V  L   S+ G +  G + HG 
Sbjct: 410 SWNSLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQ 469

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL-LHSGNIK 397
           + K  F +  + V + L DMYGKC  +  ++++F   P +S    N++++   LH   +K
Sbjct: 470 LIK-NFLYFDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSSVSWNAIISCHGLHGYGLK 528

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            AV++F  M  EG+  D +T  + L A S S   + G            G   ++     
Sbjct: 529 -AVKLFKEMQSEGVKPDHITFVSLLSACSHSGLVDEGQW-CFQLMQETYGIRPSLKHYGC 586

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
           ++D + R GH+E +    + +P  P+V  + +++  
Sbjct: 587 MVDLFGRAGHLEKAFNFVKNMPVRPDVSVWGALLGA 622



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 126/495 (25%), Positives = 247/495 (49%), Gaps = 27/495 (5%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  ++  G   ++++ + L++ Y  +G    A   FD++  +++ TWN M+ A+  + 
Sbjct: 61  QLHALLVVSGKTQSIFLSAKLINRYAFLGDIPHARLTFDQIQTKDVYTWNSMISAYARIG 120

Query: 191 RPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
                +  +N+ +    ++ +  +F  ++R C     LD+G+++H  V+KLG+ + ++++
Sbjct: 121 HFHAAVDCFNEFLSTSFLQSDHYTFPPVIRACGN---LDDGRKVHCLVLKLGF-ECDVYI 176

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
           A + + FYS  G +  A   FD + + D+ +WN+++S +     + +ALE+F  M+    
Sbjct: 177 AASFIHFYSRFGFVSLACNLFDNMMIRDIGTWNAMISGFYLNGKVAEALEVFDEMRFKSV 236

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
                +    L    +  ++  G  IH Y  KLG +   + V +AL +MY K   + S+ 
Sbjct: 237 SMDSVTISSLLPICVQLDDIISGVLIHVYAIKLGLEF-DLFVCNALINMYAKFGELRSAE 295

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            +F     R +   NSL+ +   +     A+ ++  M   G+  D +TL   +   SV+A
Sbjct: 296 TIFNQMKVRDIVSWNSLLAAFEQNKKPVIALGVYNKMHSIGVVPDLLTL---VSLASVAA 352

Query: 430 S-ANLGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
              N  S R +H    +   F  +IA+  +++D Y++ G I+ + +VFE +P  +V+ + 
Sbjct: 353 ELGNFLSSRSIHGFVTRRCWFLHDIALGNAIIDMYAKLGFIDSARKVFEGLPVKDVISWN 412

Query: 488 SIMNGYSRNGMGREALDMLEVM-IQRGLIPDKVTFLCVLA-----GCNHSGMVKEGQLVF 541
           S++ GYS+NG+  EA+D+   M    G +P++ T++ +L      G    GM   GQL+ 
Sbjct: 413 SLITGYSQNGLANEAIDVYSSMRYYSGAVPNQGTWVSILTAHSQLGALKQGMKAHGQLIK 472

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           N +        D    +C++DM G+ G L  A  L  + P     + W++++ SC  HG 
Sbjct: 473 NFLY------FDIFVSTCLVDMYGKCGKLADALSLFYEVPHQSS-VSWNAII-SC--HGL 522

Query: 602 EIIGRRVANILMELE 616
              G +   +  E++
Sbjct: 523 HGYGLKAVKLFKEMQ 537


>gi|356554981|ref|XP_003545819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g27110-like [Glycine max]
          Length = 705

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 186/627 (29%), Positives = 338/627 (53%), Gaps = 7/627 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYD 99
           Q +I+     I+ ++     + AK +FD M    ++  +N L++G  K     +AL L++
Sbjct: 35  QNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPCEISLWNGLMAGYTKNYMYVEALELFE 94

Query: 100 EMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +++ +  +K  + T+ SV   C     Y  G  IH  ++  G  +++ +GS LV +Y + 
Sbjct: 95  KLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMIHTCLIKTGLMMDIVVGSSLVGMYGKC 154

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
               +A+ LF+E+PE+++A WN ++  + +     + L  +  M+  G EPN ++    +
Sbjct: 155 NAFEKAIWLFNEMPEKDVACWNTVISCYYQSGNFKDALEYFGLMRRFGFEPNSVTITTAI 214

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+  + L+ G ++H  +I  G++ ++ F+++ALVD Y  CG L  A + F+ +P   V
Sbjct: 215 SSCARLLDLNRGMEIHEELINSGFL-LDSFISSALVDMYGKCGHLEMAIEIFEQMPKKTV 273

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ++WNS++S Y     I   ++LF RM     +P++ +    +   SR+  +  GK +HGY
Sbjct: 274 VAWNSMISGYGLKGDIISCIQLFKRMYNEGVKPTLTTLSSLIMVCSRSARLLEGKFVHGY 333

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             +       V V S+L D+Y KC  +E +  +F+  P   +   N +++  +  G + +
Sbjct: 334 TIRNRI-QPDVFVNSSLMDLYFKCGKVELAEKIFKLIPKSKVVSWNVMISGYVAEGKLFE 392

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M    +  D +T ++ L A S  A+   G  + +H   I+   ++N  V  +L
Sbjct: 393 ALGLFSEMRKSYVESDAITFTSVLTACSQLAALEKG--KEIHNLIIEKKLDNNEVVMGAL 450

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++CG ++ +  VF+ +P  ++V +TS++  Y  +G    AL++   M+Q  + PD+
Sbjct: 451 LDMYAKCGAVDEAFSVFKCLPKRDLVSWTSMITAYGSHGHAYGALELFAEMLQSNVKPDR 510

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           V FL +L+ C H+G+V EG   FN M +VYGI    +HYSC+ID+LGRAG L +A E+LQ
Sbjct: 511 VAFLAILSACGHAGLVDEGCYYFNQMINVYGIIPRVEHYSCLIDLLGRAGRLHEAYEILQ 570

Query: 579 QTPG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           Q P    D  + S+L  +CR+H N  +G  +A  L++ +P D + Y  +SN Y+   +++
Sbjct: 571 QNPEIRDDVELLSTLFSACRLHRNIDLGAEIARTLIDKDPDDSSTYILLSNMYASAHKWD 630

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
               +R       L ++ G S IE+N 
Sbjct: 631 EVRVVRSKMKELGLKKNPGCSWIEINQ 657



 Score =  189 bits (479), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 128/488 (26%), Positives = 248/488 (50%), Gaps = 8/488 (1%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER- 174
           +L  C N+    +G  IH +V++LG   ++++   L++ Y+       A  +FD +    
Sbjct: 9   LLRACMNSKSLKQGKLIHQKVVTLGLQNDIFLCKTLINQYLSCHLYDHAKCVFDNMENPC 68

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ WN ++  + +     E L ++ K +    ++P+  ++  + + C        GK +
Sbjct: 69  EISLWNGLMAGYTKNYMYVEALELFEKLLHYPYLKPDSYTYPSVFKACGGLHRYVLGKMI 128

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+ +IK G + ++I V ++LV  Y  C +  +A   F+ +P  DV  WN+++S Y     
Sbjct: 129 HTCLIKTGLM-MDIVVGSSLVGMYGKCNAFEKAIWLFNEMPEKDVACWNTVISCYYQSGN 187

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             DALE F  M+     P+  +    ++  +R  ++  G +IH  +   GF   S  + S
Sbjct: 188 FKDALEYFGLMRRFGFEPNSVTITTAISSCARLLDLNRGMEIHEELINSGFLLDSF-ISS 246

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL DMYGKC  +E ++ +FE  P +++   NS+++     G+I   +++F  M +EG+  
Sbjct: 247 ALVDMYGKCGHLEMAIEIFEQMPKKTVVAWNSMISGYGLKGDIISCIQLFKRMYNEGVKP 306

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
              TLS+ +  +  S SA L   + +H   I++  + ++ V+ SLMD Y +CG +EL+ +
Sbjct: 307 TLTTLSSLI--MVCSRSARLLEGKFVHGYTIRNRIQPDVFVNSSLMDLYFKCGKVELAEK 364

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F+ IP   VV +  +++GY   G   EAL +   M +  +  D +TF  VL  C+    
Sbjct: 365 IFKLIPKSKVVSWNVMISGYVAEGKLFEALGLFSEMRKSYVESDAITFTSVLTACSQLAA 424

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +++G+ + N +     +D +      ++DM  + G +D+A  + +  P   D + W+S++
Sbjct: 425 LEKGKEIHNLIIEK-KLDNNEVVMGALLDMYAKCGAVDEAFSVFKCLP-KRDLVSWTSMI 482

Query: 594 RSCRVHGN 601
            +   HG+
Sbjct: 483 TAYGSHGH 490


>gi|357131819|ref|XP_003567531.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Brachypodium distachyon]
          Length = 822

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 180/620 (29%), Positives = 330/620 (53%), Gaps = 4/620 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y     I+ + K G +++A  +FD +P ++ VT+  +I+G  +      AL L+ +M 
Sbjct: 148 NVYVGTALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMG 207

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++      +S +S CS  GF   G Q H     +    +  + + L+DLY +     
Sbjct: 208 LDGVRPDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVETDASVINALIDLYCKCSRLS 267

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD +  RNL +W  M+  + + S   E + M+ ++  EG +P+  +   ++  C 
Sbjct: 268 LARKLFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCG 327

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               + +G+Q+H+H IK   ++ + +V N+L+D Y+ C  L EA+  F+ +  DD IS+N
Sbjct: 328 SLAAIWQGRQVHAHAIKAN-LESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYN 386

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y+    +  A+++F +M+ C  +PS  +FV  L  +S    +   KQIHG + K 
Sbjct: 387 AMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIELSKQIHGLIVKS 446

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     ++  S+L D+Y K +++E + AVF     R +   N+++  L  +   ++AV++
Sbjct: 447 GTSL-DLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKL 505

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  +   G+  +E T    +   S   S   G  +  H   IK+G +S+  VS +L+D Y
Sbjct: 506 FNQLQVSGLAPNEFTFVALVTVASTLVSMFHG--QQFHAQIIKAGADSDHHVSNALIDMY 563

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG I+    +FE     +V+C+ S+++ Y+++G   EAL +  +M   G+ P+ VTF+
Sbjct: 564 AKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGGTGVEPNYVTFV 623

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C H+G+V EG   F+ MK+ Y I+   +HY+ ++++ GR+G L  A+E +++ P 
Sbjct: 624 GVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYASVVNLFGRSGKLHAAKEFIERMPI 683

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                +W SLL +C + GN  IGR    + +  +P D      +SN Y+  G +  + ++
Sbjct: 684 EPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMSNIYASRGLWSDAQKL 743

Query: 643 RETALARKLTRDIGHSLIEV 662
           R+      + ++ G+S IEV
Sbjct: 744 RQGMDCAGVVKEPGYSWIEV 763



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/561 (24%), Positives = 279/561 (49%), Gaps = 8/561 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ +N  +  + K G +  A++LFD MP +++V++   IS   +    + A+ L+    
Sbjct: 45  DLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCEEDAVALFAAFQ 104

Query: 103 SHGIKESASTF--SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
                E+ + F  +S L  C+ +   + G Q+H   + +G   N+Y+G+ L++LY ++G 
Sbjct: 105 RASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIGLDGNVYVGTALINLYAKVGC 164

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A+ +FD LP +N  TW  ++  + ++ +    L ++ KM  +GV P+       V  
Sbjct: 165 IDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVRPDRFVLASAVSA 224

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS    L+ G+Q H +  ++  V+ +  V NAL+D Y  C  L  A+K FD +   +++S
Sbjct: 225 CSALGFLEGGRQTHGYAYRIA-VETDASVINALIDLYCKCSRLSLARKLFDCMENRNLVS 283

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W ++++ Y       +A+ +F+++     +P + +    LN       ++ G+Q+H +  
Sbjct: 284 WTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILNSCGSLAAIWQGRQVHAHAI 343

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K   +    +V+++L DMY KC  +  + AVFE+         N+++      G++  A+
Sbjct: 344 KANLESDE-YVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMIEGYSRLGDLAGAI 402

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  M    +    +T  + L   S  ++  L   + +H   +KSG   ++    SL+D
Sbjct: 403 DVFSKMRYCSLKPSPLTFVSLLGVSSSQSAIEL--SKQIHGLIVKSGTSLDLYAGSSLID 460

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+   +E +  VF  + + ++V + +++ G ++N  G EA+ +   +   GL P++ T
Sbjct: 461 VYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGLAQNEQGEEAVKLFNQLQVSGLAPNEFT 520

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ ++   +    +  GQ  F++     G D+D    + +IDM  + G + +   L + T
Sbjct: 521 FVALVTVASTLVSMFHGQ-QFHAQIIKAGADSDHHVSNALIDMYAKCGFIKEGRLLFEST 579

Query: 581 PGGGDCMMWSSLLRSCRVHGN 601
             G D + W+S++ +   HG 
Sbjct: 580 L-GKDVICWNSMISTYAQHGQ 599



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 116/463 (25%), Positives = 224/463 (48%), Gaps = 8/463 (1%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H R +  G   +L++ + L+  Y ++G    A  LFD +P +NL +W   +    +    
Sbjct: 34  HARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHGCE 93

Query: 193 DEVLRMYNKM-KAEGVE-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           ++ + ++    +A G E PN       +R C+    +  G+Q+H   +++G +D N++V 
Sbjct: 94  EDAVALFAAFQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRIG-LDGNVYVG 152

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            AL++ Y+  G +  A   FD +PV + ++W ++++ Y+       ALELF +M L   R
Sbjct: 153 TALINLYAKVGCIDAAMLVFDALPVKNPVTWTAVITGYSQIGQGGVALELFGKMGLDGVR 212

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P        ++  S  G +  G+Q HGY  ++  +     V +AL D+Y KC+ +  +  
Sbjct: 213 PDRFVLASAVSACSALGFLEGGRQTHGYAYRIAVE-TDASVINALIDLYCKCSRLSLARK 271

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F+    R+L    +++   + +    +A+ MF  +  EG   D    ++ L   S  + 
Sbjct: 272 LFDCMENRNLVSWTTMIAGYMQNSCDAEAMAMFWQLSQEGWQPDVFACASILN--SCGSL 329

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           A +   R +H  AIK+  ES+  V  SL+D Y++C H+  +  VFE +   + + + +++
Sbjct: 330 AAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAVFEALAEDDAISYNAMI 389

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            GYSR G    A+D+   M    L P  +TF+ +L G + S    E     + +    G 
Sbjct: 390 EGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLL-GVSSSQSAIELSKQIHGLIVKSGT 448

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             D    S +ID+  +  +++ A+ +        D ++W++++
Sbjct: 449 SLDLYAGSSLIDVYSKFSLVEDAKAVFNLMH-NRDMVIWNAMI 490



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 111/430 (25%), Positives = 211/430 (49%), Gaps = 7/430 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P V    ++  +C S+  +     + ++  + N + + Y  N  ID + K  HL  A+ +
Sbjct: 314 PDVFACASILNSCGSLAAIWQGRQVHAHAIKANLESDEYVKNSLIDMYAKCEHLTEARAV 373

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F+ +   D ++YN +I G  +      A+ ++ +M    +K S  TF S+L V S+    
Sbjct: 374 FEALAEDDAISYNAMIEGYSRLGDLAGAIDVFSKMRYCSLKPSPLTFVSLLGVSSSQSAI 433

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
               QIH  ++  G  L+LY GS L+D+Y +      A  +F+ +  R++  WN M+   
Sbjct: 434 ELSKQIHGLIVKSGTSLDLYAGSSLIDVYSKFSLVEDAKAVFNLMHNRDMVIWNAMIFGL 493

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +  + +E ++++N+++  G+ PN  +F  +V   S  + +  G+Q H+ +IK G  D +
Sbjct: 494 AQNEQGEEAVKLFNQLQVSGLAPNEFTFVALVTVASTLVSMFHGQQFHAQIIKAG-ADSD 552

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             V+NAL+D Y+ CG + E +  F+     DVI WNS++S YA +    +AL +F  M  
Sbjct: 553 HHVSNALIDMYAKCGFIKEGRLLFESTLGKDVICWNSMISTYAQHGQAEEALYVFRMMGG 612

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDMYGKCNVI 365
               P+  +FV  L+  +  G V  G +   ++ TK   + G+ H  S + +++G+   +
Sbjct: 613 TGVEPNYVTFVGVLSACAHAGLVDEGLRHFDFMKTKYAIEPGTEHYAS-VVNLFGRSGKL 671

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
            ++    E  P   +E   ++  SLL + ++   VE+  +  +  +  D      ++   
Sbjct: 672 HAAKEFIERMP---IEPAAAVWRSLLSACHLFGNVEIGRYATEMALLADPADSGPSVLMS 728

Query: 426 SVSASANLGS 435
           ++ AS  L S
Sbjct: 729 NIYASRGLWS 738



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 34/147 (23%), Positives = 72/147 (48%), Gaps = 5/147 (3%)

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           L H  A+ +G   ++ ++  L+ AYS+ G +  + ++F+++P  N+V + S ++ ++++G
Sbjct: 32  LAHARAVVTGALPDLFLANLLLRAYSKLGRVRDARRLFDRMPHKNLVSWGSAISMHAQHG 91

Query: 498 MGREALDMLEVMIQR---GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
              +A+ +     QR   G  P++      L  C  S  V  GQ V      + G+D + 
Sbjct: 92  CEEDAVALFAA-FQRASGGEAPNEFLLASALRACAQSRAVSFGQQVHGVAVRI-GLDGNV 149

Query: 555 QHYSCMIDMLGRAGILDKAEELLQQTP 581
              + +I++  + G +D A  +    P
Sbjct: 150 YVGTALINLYAKVGCIDAAMLVFDALP 176


>gi|15128441|dbj|BAB62625.1| P0402A09.8 [Oryza sativa Japonica Group]
 gi|20804430|dbj|BAB92127.1| P0455C04.2 [Oryza sativa Japonica Group]
          Length = 1122

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 182/626 (29%), Positives = 333/626 (53%), Gaps = 13/626 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  NI+S N  +  +  SG L +A+ LF   P R+  T+ +++           AL L+ 
Sbjct: 70  PHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFR 129

Query: 100 EMVSHGIKESASTFSSVLSV--CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
            M+  G+     T ++VL++  C+          +H   +  G   ++++ + L+D Y +
Sbjct: 130 AMLGEGVIPDRVTVTTVLNLPGCTVPS-------LHPFAIKFGLDTHVFVCNTLLDAYCK 182

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +F E+ +++  T+N M+    +     + L+++  M+  G+     +F  +
Sbjct: 183 HGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGIPATHFTFSSI 242

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +   +    L  G Q+H+ V++   V +N+FV N+L+DFYS C  L + ++ FD +P  D
Sbjct: 243 LTVAAGMAHLLLGHQVHALVLRSTSV-LNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERD 301

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +S+N I++ YA        L LF  MQ       +  +   L+ A    +V+ GKQIH 
Sbjct: 302 NVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHA 361

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +  LG     + + +AL DMY KC +++++ + F +   +S     +L+T  + +G  +
Sbjct: 362 QLVLLGLASEDL-LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHE 420

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+++F  M   G+  D  T S+ +KA S  A   LG  R LH   I+SG++S++     
Sbjct: 421 EALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG--RQLHSYLIRSGYKSSVFSGSV 478

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++CG ++ + + F+++P  N + + ++++ Y+  G  + A+ M E M+  G  PD
Sbjct: 479 LVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 538

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            VTFL VLA C+H+G+  E    F+ MK  Y I   ++HY+C+ID LGR G   + +++L
Sbjct: 539 SVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKML 598

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            + P   D ++W+S+L SCR+HGN+ + R  A+ L  +EP D   Y  +SN Y+  G++E
Sbjct: 599 VEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWE 658

Query: 638 VSMQIRETALARKLTRDIGHSLIEVN 663
            +  +++    R + ++ G+S +E+ 
Sbjct: 659 DAACVKKIMRDRGVRKESGYSWVEIK 684


>gi|6706414|emb|CAB66100.1| putative protein [Arabidopsis thaliana]
          Length = 803

 Score =  316 bits (809), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 201/635 (31%), Positives = 341/635 (53%), Gaps = 28/635 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ++ + K G   +  K+FD +  R+ V++N LIS    F   + AL  +  M+   +
Sbjct: 49  ANTLVNLYRKCGDFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENV 108

Query: 107 KESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + S+ T  SV++ CSN     EG+    Q+H   L  G  LN +I + LV +Y ++G   
Sbjct: 109 EPSSFTLVSVVTACSNLPM-PEGLMMGKQVHAYGLRKG-ELNSFIINTLVAMYGKLGKLA 166

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  L      R+L TWN +L + C+  +  E L    +M  EGVEP+  +   ++  CS
Sbjct: 167 SSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACS 226

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              +L  GK+LH++ +K G +D N FV +ALVD Y  C  ++  ++ FD +    +  WN
Sbjct: 227 HLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWN 286

Query: 283 SIVSIYADYDLIFDALELFFRMQ----LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ++++ Y+  +   +AL LF  M+    L     ++   V       R+G     + IHG+
Sbjct: 287 AMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPA---CVRSGAFSRKEAIHGF 343

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V K G D     VQ+ L DMY +   I+ ++ +F     R L   N+++T  + S + +D
Sbjct: 344 VVKRGLDRDRF-VQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHED 402

Query: 399 AVEMFGFM------VDEG-----IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           A+ +   M      V +G     +  + +TL T L   S +A + L   + +H  AIK+ 
Sbjct: 403 ALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILP--SCAALSALAKGKEIHAYAIKNN 460

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
             +++AV  +L+D Y++CG +++S +VF++IP  NV+ +  I+  Y  +G G+EA+D+L 
Sbjct: 461 LATDVAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAIDLLR 520

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
           +M+ +G+ P++VTF+ V A C+HSGMV EG  +F  MK  YG++    HY+C++D+LGRA
Sbjct: 521 MMMVQGVKPNEVTFISVFAACSHSGMVDEGLRIFYVMKPDYGVEPSSDHYACVVDLLGRA 580

Query: 568 GILDKAEELLQQTPGG-GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           G + +A +L+   P        WSSLL + R+H N  IG   A  L++LEP   + Y  +
Sbjct: 581 GRIKEAYQLMNMMPRDFNKAGAWSSLLGASRIHNNLEIGEIAAQNLIQLEPNVASHYVLL 640

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           +N YS  G ++ + ++R     + + ++ G S IE
Sbjct: 641 ANIYSSAGLWDKATEVRRNMKEQGVRKEPGCSWIE 675



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 134/521 (25%), Positives = 247/521 (47%), Gaps = 30/521 (5%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSPLVDLYMRMG 159
           M+  GIK     F ++L   ++      G QIH  V   G+G++ + + + LV+LY + G
Sbjct: 1   MIVLGIKPDNYAFPALLKAVADLQDMELGKQIHAHVYKFGYGVDSVTVANTLVNLYRKCG 60

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                  +FD + ERN  +WN ++ + C   + +  L  +  M  E VEP+  +   +V 
Sbjct: 61  DFGAVYKVFDRISERNQVSWNSLISSLCSFEKWEMALEAFRCMLDENVEPSSFTLVSVVT 120

Query: 220 GCS-----IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
            CS      G+++  GKQ+H++ ++ G  ++N F+ N LV  Y   G L  +K       
Sbjct: 121 ACSNLPMPEGLMM--GKQVHAYGLRKG--ELNSFIINTLVAMYGKLGKLASSKVLLGSFG 176

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             D+++WN+++S     + + +ALE    M L    P   +    L   S    +  GK+
Sbjct: 177 GRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSVLPACSHLEMLRTGKE 236

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H Y  K G    +  V SAL DMY  C  + S   VF+    R +   N+++     + 
Sbjct: 237 LHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRKIGLWNAMIAGYSQNE 296

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL--SVSASANLGSCRLLHCCAIKSGFESNI 452
           + K+A+ +F  M +E  GL  +  STT+  +  +   S        +H   +K G + + 
Sbjct: 297 HDKEALLLFIGM-EESAGL--LANSTTMAGVVPACVRSGAFSRKEAIHGFVVKRGLDRDR 353

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM--- 509
            V  +LMD YSR G I+++ ++F K+   ++V + +++ GY  +    +AL +L  M   
Sbjct: 354 FVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHHEDALLLLHKMQNL 413

Query: 510 ---IQRG-----LIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
              + +G     L P+ +T + +L  C   S + K  ++   ++K+   +  D    S +
Sbjct: 414 ERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKN--NLATDVAVGSAL 471

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +DM  + G L  + ++  Q P   + + W+ ++ +  +HGN
Sbjct: 472 VDMYAKCGCLQMSRKVFDQIP-QKNVITWNVIIMAYGMHGN 511



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 134/498 (26%), Positives = 234/498 (46%), Gaps = 25/498 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLL----DSYCQPNPQLNIYSSNRTIDDFVK 56
           ML   + P   T+ ++   C+++ P+   L++     +Y     +LN +  N  +  + K
Sbjct: 103 MLDENVEPSSFTLVSVVTACSNL-PMPEGLMMGKQVHAYGLRKGELNSFIINTLVAMYGK 161

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
            G L S+K L      RD+VT+N ++S   +     +AL    EMV  G++    T SSV
Sbjct: 162 LGKLASSKVLLGSFGGRDLVTWNTVLSSLCQNEQLLEALEYLREMVLEGVEPDEFTISSV 221

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           L  CS+      G ++H   L  G    N ++GS LVD+Y      +    +FD + +R 
Sbjct: 222 LPACSHLEMLRTGKELHAYALKNGSLDENSFVGSALVDMYCNCKQVLSGRRVFDGMFDRK 281

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +  WN M+  + +     E L ++  M ++ G+  N  +   +V  C         + +H
Sbjct: 282 IGLWNAMIAGYSQNEHDKEALLLFIGMEESAGLLANSTTMAGVVPACVRSGAFSRKEAIH 341

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
             V+K G +D + FV N L+D YS  G +  A + F  +   D+++WN++++ Y   +  
Sbjct: 342 GFVVKRG-LDRDRFVQNTLMDMYSRLGKIDIAMRIFGKMEDRDLVTWNTMITGYVFSEHH 400

Query: 295 FDALELFFRMQ-LCRK----------RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-- 341
            DAL L  +MQ L RK          +P+  + +  L   +    +  GK+IH Y  K  
Sbjct: 401 EDALLLLHKMQNLERKVSKGASRVSLKPNSITLMTILPSCAALSALAKGKEIHAYAIKNN 460

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           L  D   V V SAL DMY KC  ++ S  VF+  P +++   N ++ +    GN ++A++
Sbjct: 461 LATD---VAVGSALVDMYAKCGCLQMSRKVFDQIPQKNVITWNVIIMAYGMHGNGQEAID 517

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +   M+ +G+  +EVT  +   A S S   + G  R+ +      G E +      ++D 
Sbjct: 518 LLRMMMVQGVKPNEVTFISVFAACSHSGMVDEG-LRIFYVMKPDYGVEPSSDHYACVVDL 576

Query: 462 YSRCGHIELSHQVFEKIP 479
             R G I+ ++Q+   +P
Sbjct: 577 LGRAGRIKEAYQLMNMMP 594


>gi|225448607|ref|XP_002274158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Vitis vinifera]
          Length = 820

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 327/620 (52%), Gaps = 9/620 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N     + K     +A  +FDEMP R++ ++ ++I G  +          + EM++ GI 
Sbjct: 159 NHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGIL 218

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
                +S+++  C        G  +H +++  GF  ++++ + L+++Y ++G    +  +
Sbjct: 219 PDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWV 278

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+ + E N  +WN M+          E   ++ +MK     PN  +   + +  ++G L+
Sbjct: 279 FNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSK--AVGKLV 336

Query: 228 D--EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD--FIPVDDVISWNS 283
           D   GK++ +   +LG ++ N+ V  AL+D YS CGSL +A+  FD  FI       WN+
Sbjct: 337 DVNMGKEVQNCASELG-IEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNA 395

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S Y+      +ALEL+ +M        + ++    N  + + ++ FG+ +HG V K G
Sbjct: 396 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 455

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            D   V V +A+ D Y KC  +E    VF+    R +    +L+T+   S   ++A+  F
Sbjct: 456 LDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATF 515

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M +EG   ++ T S+ L  +S ++   L   R +H    K+G ++   +  +L+D Y+
Sbjct: 516 CLMREEGFAPNQFTFSSVL--ISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYA 573

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG I  + +VF+KI +P++V +T+I++GY+++G+  +AL +   M   G+  + VT LC
Sbjct: 574 KCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLC 633

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL  C+H GMV+EG   F  M+  YG+  + +HY+C+ID+LGR G LD A E +++ P  
Sbjct: 634 VLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME 693

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
            + M+W +LL  CRVHGN  +G   A  ++ + P   A Y  +SN Y E G +E  + +R
Sbjct: 694 PNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLR 753

Query: 644 ETALARKLTRDIGHSLIEVN 663
                + + ++ G+S I V 
Sbjct: 754 NVMKDQGVKKEPGYSWISVK 773



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 225/503 (44%), Gaps = 10/503 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML++ +LP     + +  +C  +  L    ++           +I+ S   ++ + K G 
Sbjct: 212 MLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGS 271

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  +  +F+ M   + V++N +ISGC       +A  L+  M +     +  T  SV   
Sbjct: 272 IEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKA 331

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD-ELPERNLAT 178
                    G ++      LG   N+ +G+ L+D+Y + G    A  +FD       + T
Sbjct: 332 VGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNT 391

Query: 179 -WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            WN M+  + +     E L +Y +M   G+  +  ++C +    +    L  G+ +H  V
Sbjct: 392 PWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMV 451

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K G   + + V NA+ D YS CG L + +K FD +   D++SW ++V+ Y+   L  +A
Sbjct: 452 LKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEA 511

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L  F  M+     P+  +F   L   +    + +G+Q+HG + K G D     ++SAL D
Sbjct: 512 LATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKC-IESALID 570

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  I  +  VF+      +    ++++     G ++DA+++F  M   GI  + VT
Sbjct: 571 MYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVT 630

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMDAYSRCGHIELSHQVF 475
           L   L A S       G   L +   ++ G+     +     ++D   R G ++ + +  
Sbjct: 631 LLCVLFACSHGGMVEEG---LFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFI 687

Query: 476 EKIP-SPNVVCFTSIMNGYSRNG 497
            K+P  PN + + +++ G   +G
Sbjct: 688 RKMPMEPNEMVWQTLLGGCRVHG 710


>gi|297736528|emb|CBI25399.3| unnamed protein product [Vitis vinifera]
          Length = 846

 Score =  315 bits (808), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 327/620 (52%), Gaps = 9/620 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N     + K     +A  +FDEMP R++ ++ ++I G  +          + EM++ GI 
Sbjct: 105 NHAAHVYSKCSEFRAACGVFDEMPQRNVFSWTVMIVGSTEHGLFFDGFKFFCEMLNSGIL 164

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
                +S+++  C        G  +H +++  GF  ++++ + L+++Y ++G    +  +
Sbjct: 165 PDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGSIEDSYWV 224

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+ + E N  +WN M+          E   ++ +MK     PN  +   + +  ++G L+
Sbjct: 225 FNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSK--AVGKLV 282

Query: 228 D--EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD--FIPVDDVISWNS 283
           D   GK++ +   +LG ++ N+ V  AL+D YS CGSL +A+  FD  FI       WN+
Sbjct: 283 DVNMGKEVQNCASELG-IEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNTPWNA 341

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S Y+      +ALEL+ +M        + ++    N  + + ++ FG+ +HG V K G
Sbjct: 342 MISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMVLKCG 401

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            D   V V +A+ D Y KC  +E    VF+    R +    +L+T+   S   ++A+  F
Sbjct: 402 LDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEALATF 461

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M +EG   ++ T S+ L  +S ++   L   R +H    K+G ++   +  +L+D Y+
Sbjct: 462 CLMREEGFAPNQFTFSSVL--ISCASLCFLEYGRQVHGLLCKAGLDTEKCIESALIDMYA 519

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG I  + +VF+KI +P++V +T+I++GY+++G+  +AL +   M   G+  + VT LC
Sbjct: 520 KCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVTLLC 579

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL  C+H GMV+EG   F  M+  YG+  + +HY+C+ID+LGR G LD A E +++ P  
Sbjct: 580 VLFACSHGGMVEEGLFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFIRKMPME 639

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
            + M+W +LL  CRVHGN  +G   A  ++ + P   A Y  +SN Y E G +E  + +R
Sbjct: 640 PNEMVWQTLLGGCRVHGNVELGEIAARKILSIRPEYSATYVLLSNTYIETGSYEDGLSLR 699

Query: 644 ETALARKLTRDIGHSLIEVN 663
                + + ++ G+S I V 
Sbjct: 700 NVMKDQGVKKEPGYSWISVK 719



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 120/503 (23%), Positives = 225/503 (44%), Gaps = 10/503 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML++ +LP     + +  +C  +  L    ++           +I+ S   ++ + K G 
Sbjct: 158 MLNSGILPDKFAYSAIIQSCIGLDSLELGKMVHAQIVMRGFATHIFVSTSLLNMYAKLGS 217

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  +  +F+ M   + V++N +ISGC       +A  L+  M +     +  T  SV   
Sbjct: 218 IEDSYWVFNMMTEHNQVSWNAMISGCTSNGLHLEAFDLFVRMKNGACTPNMYTLVSVSKA 277

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD-ELPERNLAT 178
                    G ++      LG   N+ +G+ L+D+Y + G    A  +FD       + T
Sbjct: 278 VGKLVDVNMGKEVQNCASELGIEGNVLVGTALIDMYSKCGSLHDARSVFDTNFINCGVNT 337

Query: 179 -WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            WN M+  + +     E L +Y +M   G+  +  ++C +    +    L  G+ +H  V
Sbjct: 338 PWNAMISGYSQSGCSQEALELYVQMCQNGITSDLYTYCSVFNAIAASKSLQFGRVVHGMV 397

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K G   + + V NA+ D YS CG L + +K FD +   D++SW ++V+ Y+   L  +A
Sbjct: 398 LKCGLDLMVVSVNNAIADAYSKCGFLEDVRKVFDRMEERDIVSWTTLVTAYSQSSLGEEA 457

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L  F  M+     P+  +F   L   +    + +G+Q+HG + K G D     ++SAL D
Sbjct: 458 LATFCLMREEGFAPNQFTFSSVLISCASLCFLEYGRQVHGLLCKAGLDTEKC-IESALID 516

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  I  +  VF+      +    ++++     G ++DA+++F  M   GI  + VT
Sbjct: 517 MYAKCGSITEAGKVFDKISNPDIVSWTAIISGYAQHGLVEDALQLFRRMELSGIKANAVT 576

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMDAYSRCGHIELSHQVF 475
           L   L A S       G   L +   ++ G+     +     ++D   R G ++ + +  
Sbjct: 577 LLCVLFACSHGGMVEEG---LFYFQQMEDGYGVVPEMEHYACIIDLLGRVGRLDDAMEFI 633

Query: 476 EKIP-SPNVVCFTSIMNGYSRNG 497
            K+P  PN + + +++ G   +G
Sbjct: 634 RKMPMEPNEMVWQTLLGGCRVHG 656


>gi|15228265|ref|NP_190368.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207726|sp|Q9STS9.1|PP268_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g47840
 gi|4741201|emb|CAB41867.1| putative protein [Arabidopsis thaliana]
 gi|332644818|gb|AEE78339.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 706

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 182/664 (27%), Positives = 340/664 (51%), Gaps = 9/664 (1%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNI-YSSNRTIDDFVKSGHLNSAK 64
           ++  VR   T+   CT+ + L    + ++  + + Q+ + +  N  +   + +G+L +A+
Sbjct: 1   MISSVRNCGTIQRFCTTSISLLQKPVEENIVRISNQVMVKFDPNSHLRSLINAGNLRAAR 60

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM--VSHGIKESASTFSSVLSVCSN 122
           ++FD+MP  D+V++  +I       +  +AL L+  M  V H +    S  S VL  C  
Sbjct: 61  QVFDKMPHGDIVSWTSIIKRYVTANNSDEALILFSAMRVVDHAVSPDTSVLSVVLKACGQ 120

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
           +     G  +H   +      ++Y+GS L+D+Y R+G   ++  +F E+P RN  TW  +
Sbjct: 121 SSNIAYGESLHAYAVKTSLLSSVYVGSSLLDMYKRVGKIDKSCRVFSEMPFRNAVTWTAI 180

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +       R  E L  +++M       +  +F   ++ C+    +  GK +H+HVI  G+
Sbjct: 181 ITGLVHAGRYKEGLTYFSEMSRSEELSDTYTFAIALKACAGLRQVKYGKAIHTHVIVRGF 240

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           V   + VAN+L   Y+ CG + +    F+ +   DV+SW S++  Y        A+E F 
Sbjct: 241 V-TTLCVANSLATMYTECGEMQDGLCLFENMSERDVVSWTSLIVAYKRIGQEVKAVETFI 299

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           +M+  +  P+ ++F    +  +    + +G+Q+H  V  LG +  S+ V +++  MY  C
Sbjct: 300 KMRNSQVPPNEQTFASMFSACASLSRLVWGEQLHCNVLSLGLND-SLSVSNSMMKMYSTC 358

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             + S+  +F+    R +   ++++     +G  ++  + F +M   G    +  L++ L
Sbjct: 359 GNLVSASVLFQGMRCRDIISWSTIIGGYCQAGFGEEGFKYFSWMRQSGTKPTDFALASLL 418

Query: 423 KALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
              SVS + A +   R +H  A+  G E N  V  SL++ YS+CG I+ +  +F +    
Sbjct: 419 ---SVSGNMAVIEGGRQVHALALCFGLEQNSTVRSSLINMYSKCGSIKEASMIFGETDRD 475

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           ++V  T+++NGY+ +G  +EA+D+ E  ++ G  PD VTF+ VL  C HSG +  G   F
Sbjct: 476 DIVSLTAMINGYAEHGKSKEAIDLFEKSLKVGFRPDSVTFISVLTACTHSGQLDLGFHYF 535

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           N M+  Y +   ++HY CM+D+L RAG L  AE+++ +     D ++W++LL +C+  G+
Sbjct: 536 NMMQETYNMRPAKEHYGCMVDLLCRAGRLSDAEKMINEMSWKKDDVVWTTLLIACKAKGD 595

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
              GRR A  ++EL+P        ++N YS  G  E +  +R+   A+ + ++ G S I+
Sbjct: 596 IERGRRAAERILELDPTCATALVTLANIYSSTGNLEEAANVRKNMKAKGVIKEPGWSSIK 655

Query: 662 VNSC 665
           +  C
Sbjct: 656 IKDC 659


>gi|357450795|ref|XP_003595674.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355484722|gb|AES65925.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 975

 Score =  315 bits (807), Expect = 5e-83,   Method: Compositional matrix adjust.
 Identities = 195/663 (29%), Positives = 351/663 (52%), Gaps = 8/663 (1%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNS 62
           T+ +P   T+  +   C  +  +     +  +      L +++  N  I  + K G + S
Sbjct: 190 TEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVES 249

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS--HGIKESASTFSSVLSVC 120
           A K+FD+MP R++V++N ++  C +    +++  L+  +++   G+    +T  +V+ +C
Sbjct: 250 AVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLC 309

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           +  G    G+  H   L LG    L + S L+D+Y + G    A  LFD   E+N+ +WN
Sbjct: 310 ARQGEVRLGMVFHGLALKLGLCGELKVNSSLLDMYSKCGYLCEARVLFDT-NEKNVISWN 368

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            M+  + +         +  KM+ E  V+ N ++   ++  C   +   + K++H + ++
Sbjct: 369 SMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVLPVCEEEIQFLKLKEIHGYALR 428

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G++  +  VANA V  Y+ CGSL  A+  F  +    V SWN+++  +        AL+
Sbjct: 429 HGFIQSDELVANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALD 488

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+  M+     P + +    L+  +R  ++  GK+IHG + + GF+     +  +L  +Y
Sbjct: 489 LYLLMRGSGLEPDLFTIASLLSACARLKSLSCGKEIHGSMLRNGFELDEF-ICISLVSLY 547

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +C  I  +   F++   ++L C N+++     +    DA++MF  M+   I  DE+++ 
Sbjct: 548 VQCGKILLAKLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISII 607

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A S  ++  LG  + LHC A+KS    +  V+CSL+D Y++CG +E S  +F+++ 
Sbjct: 608 GALGACSQVSALRLG--KELHCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVH 665

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
               V +  ++ GY  +G GR+A+++ + M   G  PD VTF+ +L  CNH+G+V EG  
Sbjct: 666 LKGEVTWNVLITGYGIHGHGRKAIELFKSMQNAGFRPDSVTFIALLTACNHAGLVAEGLE 725

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
               M+S++GI    +HY+C++DMLGRAG L++A EL+ + P   D  +WSSLL SCR +
Sbjct: 726 YLGQMQSLFGIKPKLEHYACVVDMLGRAGRLNEALELVNELPDKPDSRIWSSLLSSCRNY 785

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            +  IG +VAN L+EL P     Y  +SNFY+ +G+++   ++R+      L +D G S 
Sbjct: 786 RDLDIGEKVANKLLELGPDKAENYVLISNFYARLGKWDEVRKMRQRMKEIGLQKDAGCSW 845

Query: 660 IEV 662
           IE+
Sbjct: 846 IEI 848



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 136/573 (23%), Positives = 269/573 (46%), Gaps = 41/573 (7%)

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESASTFSSVLSVCSNAG 124
           +F+    +++  +N L+SG  +    + A++++ EM+S         T   V+  C    
Sbjct: 151 VFNASRRKNLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVY 210

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G  +H   L      ++++G+ L+ +Y + G    A+ +FD++P+RNL +WN ++ 
Sbjct: 211 DVRLGEAVHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMY 270

Query: 185 AFCELSRPDEVLRMYNKM--KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           A  E    +E   ++  +    EG+ P+  +   ++  C+    +  G   H   +KLG 
Sbjct: 271 ACLENGVFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLGMVFHGLALKLGL 330

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
               + V ++L+D YS CG L EA+  FD     +VISWNS++  Y+       A EL  
Sbjct: 331 CG-ELKVNSSLLDMYSKCGYLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLR 388

Query: 303 RMQLCRK-----------RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           +MQ+  K            P     ++FL            K+IHGY  + GF      V
Sbjct: 389 KMQMEDKVKVNEVTLLNVLPVCEEEIQFLKL----------KEIHGYALRHGFIQSDELV 438

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +A    Y KC  +  +  VF     + +   N+L+   + +G  + A++++  M   G+
Sbjct: 439 ANAFVAGYAKCGSLHYAEGVFCGMESKMVSSWNALIGGHVQNGFPRKALDLYLLMRGSGL 498

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D  T+++ L A +   S + G  + +H   +++GFE +  +  SL+  Y +CG I L+
Sbjct: 499 EPDLFTIASLLSACARLKSLSCG--KEIHGSMLRNGFELDEFICISLVSLYVQCGKILLA 556

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
              F+ +   N+VC+ +++NG+S+N    +ALDM   M+   + PD+++ +  L  C+  
Sbjct: 557 KLFFDNMEEKNLVCWNTMINGFSQNEFPFDALDMFHQMLSSKIWPDEISIIGALGACSQV 616

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYS----CMIDMLGRAGILDKAEELLQQTPGGGDCM 587
             ++ G+ +       + + +    +S     +IDM  + G +++++ +  +    G+ +
Sbjct: 617 SALRLGKEL-----HCFAVKSHLTEHSFVTCSLIDMYAKCGCMEQSQNIFDRVHLKGE-V 670

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620
            W+ L+    +HG+   GR+   +   ++   F
Sbjct: 671 TWNVLITGYGIHGH---GRKAIELFKSMQNAGF 700



 Score =  111 bits (277), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 193/422 (45%), Gaps = 47/422 (11%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G+++H+ +        ++ +   LV  YS C S  ++   F+     ++  WN+++S Y 
Sbjct: 112 GRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRKNLFLWNALLSGYL 171

Query: 290 DYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
              L  DA+ +F  M  L    P   +    +       +V  G+ +HG+  K       
Sbjct: 172 RNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEAVHGFALKTKV-LSD 230

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV- 407
           V V +AL  MYGK   +ES+V VF+  P R+L   NS+M + L +G  +++  +F  ++ 
Sbjct: 231 VFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENGVFEESYGLFKGLLN 290

Query: 408 -DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            DEG+  D  T+ T +   +      LG   + H  A+K G    + V+ SL+D YS+CG
Sbjct: 291 GDEGLMPDVATMVTVIPLCARQGEVRLG--MVFHGLALKLGLCGELKVNSSLLDMYSKCG 348

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM-IQRGLIPDKVTFLCVL 525
           ++  +  +F+     NV+ + S++ GYS++   R A ++L  M ++  +  ++VT L VL
Sbjct: 349 YLCEARVLFD-TNEKNVISWNSMIGGYSKDRDFRGAFELLRKMQMEDKVKVNEVTLLNVL 407

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYG-------IDADRQHYSCMIDMLGRAGILDKAEELLQ 578
             C       E ++ F  +K ++G       I +D    +  +    + G L  AE    
Sbjct: 408 PVC-------EEEIQFLKLKEIHGYALRHGFIQSDELVANAFVAGYAKCGSLHYAE---- 456

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN----------ILME---LEPVDFAVYSQ 625
               G  C M S ++ S     N +IG  V N          +LM    LEP  F + S 
Sbjct: 457 ----GVFCGMESKMVSS----WNALIGGHVQNGFPRKALDLYLLMRGSGLEPDLFTIASL 508

Query: 626 VS 627
           +S
Sbjct: 509 LS 510



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 71/278 (25%), Positives = 133/278 (47%), Gaps = 8/278 (2%)

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L       N+  G++IH +++        V + + L  MY  C+    S  VF ++  +
Sbjct: 99  LLQLCGEYKNIEIGRKIHNFISTSPHFQNDVVLITRLVTMYSICDSPYDSCLVFNASRRK 158

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCR 437
           +L   N+L++  L +   +DAV +F  M+       D  TL   +KA        LG   
Sbjct: 159 NLFLWNALLSGYLRNSLFRDAVFVFVEMISLTEFVPDNFTLPCVIKACVGVYDVRLGEA- 217

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H  A+K+   S++ V  +L+  Y + G +E + +VF+K+P  N+V + S+M     NG
Sbjct: 218 -VHGFALKTKVLSDVFVGNALIAMYGKFGFVESAVKVFDKMPQRNLVSWNSVMYACLENG 276

Query: 498 MGREALDMLEVMIQ--RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +  E+  + + ++    GL+PD  T + V+  C   G V+ G +VF+ +    G+  + +
Sbjct: 277 VFEESYGLFKGLLNGDEGLMPDVATMVTVIPLCARQGEVRLG-MVFHGLALKLGLCGELK 335

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             S ++DM  + G L +A  L        + + W+S++
Sbjct: 336 VNSSLLDMYSKCGYLCEARVLFDTNE--KNVISWNSMI 371


>gi|307136370|gb|ADN34182.1| pentatricopeptide repeat-containing protein [Cucumis melo subsp.
           melo]
          Length = 1131

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 182/621 (29%), Positives = 334/621 (53%), Gaps = 6/621 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  +  ++ + K   +++AK++F+ +  R++V +N ++ G  +    ++ +  +  M 
Sbjct: 343 NVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMK 402

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            HG +    TF+S+ S C++  +   G Q+H  ++   F  NL++ + LVD+Y + G   
Sbjct: 403 RHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKFTSNLFVANALVDMYAKSGALK 462

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F+ +   +  +WN ++  + +    DE   M+ +M + GV P+ +S   +V  C+
Sbjct: 463 EARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACA 522

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                 +G+Q H  ++K+G +D +    ++L+D Y  CG ++ A+  F  +P  +V+S N
Sbjct: 523 NVKEFKQGQQCHCLLVKVG-LDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSIN 581

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y    L  +A+ LF  +Q+   +P+  +F   L+       +  G+QIHG V K 
Sbjct: 582 ALIAGYTMSHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKW 640

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           GF   S  V  +L  MY        S  +F E    + L    +L++      + + A++
Sbjct: 641 GFLSSSEMVCVSLLCMYMNSQRFADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQ 700

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +  M  + I  D+ T ++ L+A +  +S   G  + +H     +GF  +     SL+D 
Sbjct: 701 FYQHMRSDNILPDQATFASVLRACAGMSSLQTG--QEVHSLIFHTGFNMDEITCSSLIDM 758

Query: 462 YSRCGHIELSHQVFEKIPSPN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           Y++CG ++ S QVF ++P  N V+ + S++ G ++NG   EAL++ + M Q+ +IPD+VT
Sbjct: 759 YAKCGDVKGSLQVFHEMPRRNSVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVT 818

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL+ C+H+G V EG+ VF+ M + Y +     H  CM+D+LGR G L++AEE + + 
Sbjct: 819 FLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKL 878

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
               D M+WS+LL +CR HG+E+ G+R AN LMEL+P   + Y  +S  Y+E   +  + 
Sbjct: 879 GCKADPMLWSTLLGACRKHGDEVRGKRAANKLMELKPQSSSSYVLLSGLYAESENWSGAD 938

Query: 641 QIRETALARKLTRDIGHSLIE 661
            +R     + + +  G+S IE
Sbjct: 939 SLRREMKLKGVKKLPGYSWIE 959



 Score =  250 bits (639), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 164/546 (30%), Positives = 281/546 (51%), Gaps = 8/546 (1%)

Query: 50  TIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            I+ +V  G L  A+KLF ++P  ++V +N++ISG  K    ++A+  + E+   G+K +
Sbjct: 249 VINAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKAT 308

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            S+  SVLS  ++      G  +H + +  G   N+Y+GS LV++Y +      A  +F+
Sbjct: 309 RSSLGSVLSAIASLSMLNYGSMVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFN 368

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            L ERN+  WN ML  F +     EV+  ++ MK  G +P+  +F  +   C+    LD 
Sbjct: 369 SLGERNIVLWNAMLGGFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDF 428

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G QLH+ +IK  +   N+FVANALVD Y+  G+L EA+K F+F+ + D +SWN+I+  Y 
Sbjct: 429 GGQLHTVMIKNKFTS-NLFVANALVDMYAKSGALKEARKQFEFMKIHDNVSWNAIIVGYV 487

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
             +   +A  +F RM      P   S    ++  +       G+Q H  + K+G D  S 
Sbjct: 488 QEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVKEFKQGQQCHCLLVKVGLDT-ST 546

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
              S+L DMY KC V+ ++  VF S P R++   N+L+     S ++++A+ +F  +   
Sbjct: 547 CAGSSLIDMYVKCGVVLAARDVFYSMPYRNVVSINALIAGYTMS-HLEEAIHLFQEIQMV 605

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC-SLMDAYSRCGHI 468
           G+   EVT +  L     +   NLG  R +H   +K GF S+  + C SL+  Y      
Sbjct: 606 GLKPTEVTFAGLLDGCDGAFMLNLG--RQIHGQVMKWGFLSSSEMVCVSLLCMYMNSQRF 663

Query: 469 ELSHQVFEKIPSPN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
             S  +F ++  P  +V +T++++GY++     +AL   + M    ++PD+ TF  VL  
Sbjct: 664 ADSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQATFASVLRA 723

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C     ++ GQ V +S+    G + D    S +IDM  + G +  + ++  + P     +
Sbjct: 724 CAGMSSLQTGQEV-HSLIFHTGFNMDEITCSSLIDMYAKCGDVKGSLQVFHEMPRRNSVI 782

Query: 588 MWSSLL 593
            W+S++
Sbjct: 783 SWNSMI 788



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 132/537 (24%), Positives = 250/537 (46%), Gaps = 46/537 (8%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSH 104
           N  +D +VK G+++ A+K F  +  +D+  +N ++S     G F    Q+      M +H
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVC---MWNH 136

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++ +  TF+ VLS CS       G Q+HC V  +GFG   +    L+D+Y +      A
Sbjct: 137 GVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGFRSFCQGGLIDMYAKCRNLRDA 196

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD     +  +W  ++  +     P E +++++KM+  G  P+ ++           
Sbjct: 197 RLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVPDQIALV--------- 247

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
                                       +++ Y A G L +A+K F  IP  +V++WN +
Sbjct: 248 ---------------------------TVINAYVALGRLADARKLFTQIPNPNVVAWNVM 280

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S +A      +A+  F  ++    + +  S    L+  +    + +G  +H    K G 
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQAIKEGL 340

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D  +V+V SAL +MY KC+ ++++  VF S   R++   N+++     +G  ++ +E F 
Sbjct: 341 DD-NVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFS 399

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
           +M   G   DE T ++   A +     + G    LH   IK+ F SN+ V+ +L+D Y++
Sbjct: 400 YMKRHGPQPDEFTFTSIFSACASLHYLDFGG--QLHTVMIKNKFTSNLFVANALVDMYAK 457

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G ++ + + FE +   + V + +I+ GY +     EA  M   M+  G++PD+V+   +
Sbjct: 458 SGALKEARKQFEFMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           ++ C +    K+GQ     +  V G+D      S +IDM  + G++  A ++    P
Sbjct: 518 VSACANVKEFKQGQQCHCLLVKV-GLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP 573



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/448 (22%), Positives = 207/448 (46%), Gaps = 42/448 (9%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH + L +G GL   +G+ +VDLY++ G    A   F  L ++++  WN +L  + +   
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
              V++ +  M   GV PN  +F  ++  CS    ++ GKQ+H  V K+G+     F   
Sbjct: 123 FATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGF-GFRSFCQG 181

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
            L+D Y+ C +L +A+  FD     D +SW ++++ Y       +A+++F +MQ     P
Sbjct: 182 GLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKMQRVGHVP 241

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              + V  +N     G +   +++                                    
Sbjct: 242 DQIALVTVINAYVALGRLADARKL------------------------------------ 265

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F   P  ++   N +++     G  ++A+  F  +   G+     +L + L A++  +  
Sbjct: 266 FTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSML 325

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           N GS  ++H  AIK G + N+ V  +L++ Y++C  ++ + QVF  +   N+V + +++ 
Sbjct: 326 NYGS--MVHAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLG 383

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK-EGQLVFNSMKSVYGI 550
           G+++NG+ +E ++    M + G  PD+ TF  + + C     +   GQL    +K+ +  
Sbjct: 384 GFAQNGLAQEVMEFFSYMKRHGPQPDEFTFTSIFSACASLHYLDFGGQLHTVMIKNKF-- 441

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQ 578
            ++    + ++DM  ++G L +A +  +
Sbjct: 442 TSNLFVANALVDMYAKSGALKEARKQFE 469



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 171/367 (46%), Gaps = 41/367 (11%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L   K +HS  +K+G V +   + N +VD Y  CG++  A+K+F  +   DV +WNS++S
Sbjct: 57  LSTAKVIHSKSLKIG-VGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLS 115

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           +Y D+ L    ++ F  M     RP+  +F   L+  S   ++ +GKQ+H  V K+GF  
Sbjct: 116 MYLDHGLFATVVQSFVCMWNHGVRPNEFTFAMVLSACSGLQDINYGKQVHCGVFKMGFGF 175

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            S   Q  L DMY KC  +  +  VF+ A         +L+   +  G   +AV++F  M
Sbjct: 176 RSF-CQGGLIDMYAKCRNLRDARLVFDGALNLDTVSWTTLIAGYVRDGFPMEAVKVFDKM 234

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              G   D++ L T                                     +++AY   G
Sbjct: 235 QRVGHVPDQIALVT-------------------------------------VINAYVALG 257

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +  + ++F +IP+PNVV +  +++G+++ G   EA+     + + GL   + +   VL+
Sbjct: 258 RLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLS 317

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
                 M+  G +V ++     G+D +    S +++M  +   +D A+++   + G  + 
Sbjct: 318 AIASLSMLNYGSMV-HAQAIKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF-NSLGERNI 375

Query: 587 MMWSSLL 593
           ++W+++L
Sbjct: 376 VLWNAML 382


>gi|296090723|emb|CBI41122.3| unnamed protein product [Vitis vinifera]
          Length = 634

 Score =  315 bits (806), Expect = 7e-83,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 299/507 (58%), Gaps = 12/507 (2%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD++PERNL TW LM+  F +L    + + ++  M+  G  P+  ++  ++  C+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVIS 280
             LL  GKQLHS VI+LG + +++ V  +LVD Y+ C   GS+ +++K F+ +P  +V+S
Sbjct: 69  LGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 127

Query: 281 WNSIVSIYADY-DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           W +I++ YA   +   +A+ELF +M     RP+  SF   L       + Y G+Q++ Y 
Sbjct: 128 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 187

Query: 340 TKLGFDHGSVH-VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            KLG    SV+ V ++L  MY +   +E +   F+    ++L   N+++     +   ++
Sbjct: 188 VKLGI--ASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 245

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLK-ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           A  +F  + D GIG+   T ++ L  A S+ A   +G    +H   +K G++SN  +  +
Sbjct: 246 AFLLFNEIADTGIGISAFTFASLLSGAASIGA---MGKGEQIHGRLLKGGYKSNQCICNA 302

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+  YSRCG+IE + QVF ++   NV+ +TS++ G++++G    AL+M   M++ G  P+
Sbjct: 303 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 362

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           ++T++ VL+ C+H GM+ EGQ  FNSM   +GI    +HY+CM+D+LGR+G+L +A E +
Sbjct: 363 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 422

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
              P   D ++W +LL +CRVHGN  +GR  A +++E EP D A Y  +SN ++  G+++
Sbjct: 423 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 482

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
             ++IR++   R L ++ G S IEV +
Sbjct: 483 DVVKIRKSMKERNLIKEAGCSWIEVEN 509



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A K+FD+MP R++VT+ L+I+   +    + A+ L+ +M   G      T+SSVLS C+ 
Sbjct: 9   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 68

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD---LFDELPERNLATW 179
            G    G Q+H RV+ LG  L++ +G  LVD+Y +        D   +F+++PE N+ +W
Sbjct: 69  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 128

Query: 180 NLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD--EGKQLHSH 236
             ++ A+ +    D E + ++ KM +  + PN  SF  +++ C  G L D   G+Q++S+
Sbjct: 129 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSDPYTGEQVYSY 186

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
            +KLG   VN  V N+L+  Y+  G + +A+K+FD +   +++S+N+IV  YA      +
Sbjct: 187 AVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 245

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A  LF  +       S  +F   L+ A+  G +  G+QIHG + K G+      + +AL 
Sbjct: 246 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALI 304

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY +C  IE++  VF     R++    S++T     G    A+EMF  M++ G   +E+
Sbjct: 305 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 364

Query: 417 TLSTTLKALS 426
           T    L A S
Sbjct: 365 TYVAVLSACS 374



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 80/323 (24%), Positives = 170/323 (52%), Gaps = 8/323 (2%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEMVSHGIKESASTFSSV 116
           G ++ ++K+F++MP  +++++  +I+   +     K+A+ L+ +M+S  I+ +  +FSSV
Sbjct: 108 GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 167

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L  C N      G Q++   + LG      +G+ L+ +Y R G    A   FD L E+NL
Sbjct: 168 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 227

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            ++N ++  + +  + +E   ++N++   G+  +  +F  ++ G +    + +G+Q+H  
Sbjct: 228 VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 287

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           ++K G+   N  + NAL+  YS CG++  A + F+ +   +VISW S+++ +A +     
Sbjct: 288 LLKGGY-KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATR 346

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV---HVQS 353
           ALE+F +M     +P+  ++V  L+  S  G +  G++   +   +  +HG V      +
Sbjct: 347 ALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQK---HFNSMYKEHGIVPRMEHYA 403

Query: 354 ALTDMYGKCNVIESSVAVFESAP 376
            + D+ G+  ++  ++    S P
Sbjct: 404 CMVDLLGRSGLLVEAMEFINSMP 426



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 158/314 (50%), Gaps = 13/314 (4%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYS----SNRTIDDFVK 56
           M+S  + P   + +++   C ++    +   + SY     +L I S     N  I  + +
Sbjct: 152 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA---VKLGIASVNCVGNSLISMYAR 208

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           SG +  A+K FD +  +++V+YN ++ G  K    ++A  L++E+   GI  SA TF+S+
Sbjct: 209 SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASL 268

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           LS  ++ G   +G QIH R+L  G+  N  I + L+ +Y R G    A  +F+E+ +RN+
Sbjct: 269 LSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 328

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHS 235
            +W  M+  F +       L M++KM   G +PN +++  ++  CS +GM+ +  K  +S
Sbjct: 329 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 388

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVS---IYADY 291
              + G V      A  +VD     G L+EA +  + +P+  D + W +++    ++ + 
Sbjct: 389 MYKEHGIVPRMEHYA-CMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 447

Query: 292 DLIFDALELFFRMQ 305
           +L   A E+    +
Sbjct: 448 ELGRHAAEMILEQE 461


>gi|359497772|ref|XP_003635637.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like, partial [Vitis vinifera]
          Length = 629

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 174/507 (34%), Positives = 299/507 (58%), Gaps = 12/507 (2%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD++PERNL TW LM+  F +L    + + ++  M+  G  P+  ++  ++  C+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVIS 280
             LL  GKQLHS VI+LG + +++ V  +LVD Y+ C   GS+ +++K F+ +P  +V+S
Sbjct: 64  LGLLALGKQLHSRVIRLG-LALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMS 122

Query: 281 WNSIVSIYADY-DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           W +I++ YA   +   +A+ELF +M     RP+  SF   L       + Y G+Q++ Y 
Sbjct: 123 WTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA 182

Query: 340 TKLGFDHGSVH-VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            KLG    SV+ V ++L  MY +   +E +   F+    ++L   N+++     +   ++
Sbjct: 183 VKLGI--ASVNCVGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 240

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLK-ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           A  +F  + D GIG+   T ++ L  A S+ A   +G    +H   +K G++SN  +  +
Sbjct: 241 AFLLFNEIADTGIGISAFTFASLLSGAASIGA---MGKGEQIHGRLLKGGYKSNQCICNA 297

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+  YSRCG+IE + QVF ++   NV+ +TS++ G++++G    AL+M   M++ G  P+
Sbjct: 298 LISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPN 357

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           ++T++ VL+ C+H GM+ EGQ  FNSM   +GI    +HY+CM+D+LGR+G+L +A E +
Sbjct: 358 EITYVAVLSACSHVGMISEGQKHFNSMYKEHGIVPRMEHYACMVDLLGRSGLLVEAMEFI 417

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
              P   D ++W +LL +CRVHGN  +GR  A +++E EP D A Y  +SN ++  G+++
Sbjct: 418 NSMPLMADALVWRTLLGACRVHGNTELGRHAAEMILEQEPDDPAAYILLSNLHASAGQWK 477

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
             ++IR++   R L ++ G S IEV +
Sbjct: 478 DVVKIRKSMKERNLIKEAGCSWIEVEN 504



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 117/370 (31%), Positives = 197/370 (53%), Gaps = 10/370 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A K+FD+MP R++VT+ L+I+   +    + A+ L+ +M   G      T+SSVLS C+ 
Sbjct: 4   AYKVFDKMPERNLVTWTLMITRFAQLGCARDAIDLFLDMELSGYVPDRFTYSSVLSACTE 63

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD---LFDELPERNLATW 179
            G    G Q+H RV+ LG  L++ +G  LVD+Y +        D   +F+++PE N+ +W
Sbjct: 64  LGLLALGKQLHSRVIRLGLALDVCVGCSLVDMYAKCAADGSVDDSRKVFEQMPEHNVMSW 123

Query: 180 NLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD--EGKQLHSH 236
             ++ A+ +    D E + ++ KM +  + PN  SF  +++ C  G L D   G+Q++S+
Sbjct: 124 TAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSVLKAC--GNLSDPYTGEQVYSY 181

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
            +KLG   VN  V N+L+  Y+  G + +A+K+FD +   +++S+N+IV  YA      +
Sbjct: 182 AVKLGIASVNC-VGNSLISMYARSGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEE 240

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A  LF  +       S  +F   L+ A+  G +  G+QIHG + K G+      + +AL 
Sbjct: 241 AFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGRLLKGGYKSNQC-ICNALI 299

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY +C  IE++  VF     R++    S++T     G    A+EMF  M++ G   +E+
Sbjct: 300 SMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEI 359

Query: 417 TLSTTLKALS 426
           T    L A S
Sbjct: 360 TYVAVLSACS 369



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 81/323 (25%), Positives = 170/323 (52%), Gaps = 8/323 (2%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEMVSHGIKESASTFSSV 116
           G ++ ++K+F++MP  +++++  +I+   +     K+A+ L+ +M+S  I+ +  +FSSV
Sbjct: 103 GSVDDSRKVFEQMPEHNVMSWTAIITAYAQSGECDKEAIELFCKMISGHIRPNHFSFSSV 162

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L  C N      G Q++   + LG      +G+ L+ +Y R G    A   FD L E+NL
Sbjct: 163 LKACGNLSDPYTGEQVYSYAVKLGIASVNCVGNSLISMYARSGRMEDARKAFDILFEKNL 222

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            ++N ++  + +  + +E   ++N++   G+  +  +F  ++ G +    + +G+Q+H  
Sbjct: 223 VSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASLLSGAASIGAMGKGEQIHGR 282

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           ++K G+   N  + NAL+  YS CG++  A + F+ +   +VISW S+++ +A +     
Sbjct: 283 LLKGGY-KSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNVISWTSMITGFAKHGFATR 341

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV---HVQS 353
           ALE+F +M     +P+  ++V  L+  S  G +  G++    + K   +HG V      +
Sbjct: 342 ALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNSMYK---EHGIVPRMEHYA 398

Query: 354 ALTDMYGKCNVIESSVAVFESAP 376
            + D+ G+  ++  ++    S P
Sbjct: 399 CMVDLLGRSGLLVEAMEFINSMP 421



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 84/314 (26%), Positives = 158/314 (50%), Gaps = 13/314 (4%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYS----SNRTIDDFVK 56
           M+S  + P   + +++   C ++    +   + SY     +L I S     N  I  + +
Sbjct: 147 MISGHIRPNHFSFSSVLKACGNLSDPYTGEQVYSYA---VKLGIASVNCVGNSLISMYAR 203

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           SG +  A+K FD +  +++V+YN ++ G  K    ++A  L++E+   GI  SA TF+S+
Sbjct: 204 SGRMEDARKAFDILFEKNLVSYNAIVDGYAKNLKSEEAFLLFNEIADTGIGISAFTFASL 263

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           LS  ++ G   +G QIH R+L  G+  N  I + L+ +Y R G    A  +F+E+ +RN+
Sbjct: 264 LSGAASIGAMGKGEQIHGRLLKGGYKSNQCICNALISMYSRCGNIEAAFQVFNEMEDRNV 323

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHS 235
            +W  M+  F +       L M++KM   G +PN +++  ++  CS +GM+ +  K  +S
Sbjct: 324 ISWTSMITGFAKHGFATRALEMFHKMLETGTKPNEITYVAVLSACSHVGMISEGQKHFNS 383

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVS---IYADY 291
              + G V      A  +VD     G L+EA +  + +P+  D + W +++    ++ + 
Sbjct: 384 MYKEHGIVPRMEHYA-CMVDLLGRSGLLVEAMEFINSMPLMADALVWRTLLGACRVHGNT 442

Query: 292 DLIFDALELFFRMQ 305
           +L   A E+    +
Sbjct: 443 ELGRHAAEMILEQE 456


>gi|224120094|ref|XP_002331135.1| predicted protein [Populus trichocarpa]
 gi|222872863|gb|EEF09994.1| predicted protein [Populus trichocarpa]
          Length = 799

 Score =  314 bits (805), Expect = 8e-83,   Method: Compositional matrix adjust.
 Identities = 185/622 (29%), Positives = 335/622 (53%), Gaps = 12/622 (1%)

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPAR--DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           + +D ++    L  A+ +FD+MP R  ++V +NLLI         ++A+ LY +M+ +GI
Sbjct: 56  KLVDLYIACSELKIARHVFDKMPHRPKNVVLWNLLIRAYAWNGPYEEAIDLYYKMLGYGI 115

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +  TF  VL  CS     +EG +IHC +  L    N+Y+ + LVD Y + G    A +
Sbjct: 116 TPNRFTFPFVLKACSALKEASEGREIHCDIKRLRLESNVYVSTALVDFYAKCGCLDDAKE 175

Query: 167 LFDELPERNLATWNLMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           +FD++ +R++  WN M+  F       DEV R+  +M+ + V PN  +   ++   +   
Sbjct: 176 VFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQMQND-VSPNSSTIVGVLPAVAQVN 234

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSI 284
            L  GK++H   ++ G+V  ++ V   ++D Y  C  +  A++ FD +  V + ++W+++
Sbjct: 235 SLRHGKEIHGFCVRRGFVG-DVVVGTGILDVYGKCQCIDYARRIFDMMGIVKNEVTWSAM 293

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF---LNFASRTGNVYFGKQIHGYVTK 341
           V  Y   D + +ALELF ++ + +    + S V     +   +   ++  G  +H Y  K
Sbjct: 294 VGAYVVCDFMREALELFCQLLMLKDDVIVLSAVTLATVIRVCANLTDLSTGTCLHCYAIK 353

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF    + V + L  MY KC +I  ++  F     R      ++++  + +GN ++ + 
Sbjct: 354 SGFVL-DLMVGNTLLSMYAKCGIINGAMRFFNEMDLRDAVSFTAIISGYVQNGNSEEGLR 412

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           MF  M   GI  ++ TL++ L A +  A  + GSC   HC AI  GF ++  +  +L+D 
Sbjct: 413 MFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCS--HCYAIICGFTADTMICNALIDM 470

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG I+ + +VF+++    +V + +++  Y  +G+G EAL + + M   GL PD VTF
Sbjct: 471 YAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIGLEALLLFDNMQSEGLKPDDVTF 530

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           +C+++ C+HSG+V EG+  FN+M   +GI    +HY+CM+D+L RAG+  +    +++ P
Sbjct: 531 ICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHYACMVDLLSRAGLFKEVHSFIEKMP 590

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  +W +LL +CRV+ N  +G  V+  + +L P     +  +SN YS +G ++ + Q
Sbjct: 591 LEPDVRVWGALLSACRVYKNVELGEGVSKKIQKLGPESTGNFVLLSNMYSAVGRWDDAAQ 650

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R T   +   +  G S IE++
Sbjct: 651 VRFTQKEQGFEKSPGCSWIEIS 672



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 215/457 (47%), Gaps = 12/457 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y S   +D + K G L+ AK++FD+M  RD+V +N +ISG          +      +
Sbjct: 153 NVYVSTALVDFYAKCGCLDDAKEVFDKMHKRDVVAWNSMISGFSLHEGSYDEVARLLVQM 212

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            + +  ++ST   VL   +       G +IH   +  GF  ++ +G+ ++D+Y +     
Sbjct: 213 QNDVSPNSSTIVGVLPAVAQVNSLRHGKEIHGFCVRRGFVGDVVVGTGILDVYGKCQCID 272

Query: 163 RALDLFDELP-ERNLATWNLMLRAF--CELSRPDEVLRMYNK---MKAEGVEPNGLSFCY 216
            A  +FD +   +N  TW+ M+ A+  C+  R  E L ++ +   +K + +  + ++   
Sbjct: 273 YARRIFDMMGIVKNEVTWSAMVGAYVVCDFMR--EALELFCQLLMLKDDVIVLSAVTLAT 330

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++R C+    L  G  LH + IK G+V +++ V N L+  Y+ CG +  A + F+ + + 
Sbjct: 331 VIRVCANLTDLSTGTCLHCYAIKSGFV-LDLMVGNTLLSMYAKCGIINGAMRFFNEMDLR 389

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D +S+ +I+S Y       + L +F  MQL    P   +    L   +    +++G   H
Sbjct: 390 DAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGSCSH 449

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            Y    GF   ++ + +AL DMY KC  I+++  VF+    R +   N+++ +    G  
Sbjct: 450 CYAIICGFTADTM-ICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHGIG 508

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            +A+ +F  M  EG+  D+VT    + A S S     G     +      G    +    
Sbjct: 509 LEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGK-YWFNAMTQDFGIIPRMEHYA 567

Query: 457 SLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
            ++D  SR G  +  H   EK+P  P+V  + ++++ 
Sbjct: 568 CMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSA 604



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 75/287 (26%), Positives = 143/287 (49%), Gaps = 5/287 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+ T+   C ++  LS+   L  Y  +    L++   N  +  + K G +N A + F+EM
Sbjct: 327 TLATVIRVCANLTDLSTGTCLHCYAIKSGFVLDLMVGNTLLSMYAKCGIINGAMRFFNEM 386

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             RD V++  +ISG  +  + ++ L ++ EM   GI    +T +SVL  C++      G 
Sbjct: 387 DLRDAVSFTAIISGYVQNGNSEEGLRMFLEMQLSGINPEKATLASVLPACAHLAGLHYGS 446

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
             HC  +  GF  +  I + L+D+Y + G    A  +FD + +R + +WN M+ A+    
Sbjct: 447 CSHCYAIICGFTADTMICNALIDMYAKCGKIDTARKVFDRMHKRGIVSWNTMIIAYGIHG 506

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E L +++ M++EG++P+ ++F  ++  CS   L+ EGK   + + +   +   +   
Sbjct: 507 IGLEALLLFDNMQSEGLKPDDVTFICLISACSHSGLVAEGKYWFNAMTQDFGIIPRMEHY 566

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---IYADYDL 293
             +VD  S  G   E     + +P++ DV  W +++S   +Y + +L
Sbjct: 567 ACMVDLLSRAGLFKEVHSFIEKMPLEPDVRVWGALLSACRVYKNVEL 613


>gi|242096002|ref|XP_002438491.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
 gi|241916714|gb|EER89858.1| hypothetical protein SORBIDRAFT_10g020540 [Sorghum bicolor]
          Length = 794

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 209/657 (31%), Positives = 341/657 (51%), Gaps = 38/657 (5%)

Query: 38  PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL 97
           P P +    SN  +  + + G L +A  LFD MP+RD VT+N LI+    FR    AL  
Sbjct: 92  PTPAV----SNALLTAYARCGDLTAALALFDAMPSRDAVTFNSLIAALCLFRRWLPALDA 147

Query: 98  YDEMVSHGIKESASTFSSVLSVCSN-AGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDL 154
             +M+  G   ++ T  SVL  CS+ A     G + H   L  GF  G   +  + L+ +
Sbjct: 148 LRDMLLEGHPLTSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSM 207

Query: 155 YMRMGPSVRALDLF-----DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
           Y R+G    A  LF      ++P   + TWN M+    +  R  E + +   M A GV P
Sbjct: 208 YARLGLVDDAQTLFGSVGATDVPGGGVVTWNTMVSLLVQSGRCGEAIEVLYDMVARGVRP 267

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +G++F   +  CS   +L  G+++H++V+K   +  N FVA+ALVD Y++   +  A+  
Sbjct: 268 DGVTFASALPACSQLEMLSLGREMHAYVLKDADLAANSFVASALVDMYASHERVGAARLV 327

Query: 270 FDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRT 326
           FD +P  +  +  WN+++  YA   L  DALELF RM+      PS  +    L   +R+
Sbjct: 328 FDMVPAGERQLGLWNAMICGYAQAGLDEDALELFARMETEAGVVPSETTIAGVLPSCARS 387

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
                 + +HGYV K G       VQ+AL D+Y +   ++++  +F +   R +   N+L
Sbjct: 388 ETFAGKEAVHGYVVKRGMADNPF-VQNALMDLYARLGDMDAARWIFATIEPRDVVSWNTL 446

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEG-----------IGLDE-------VTLSTTLKALSVS 428
           +T  +  G+I+DA ++   M  +G            G DE       +TL T L   ++ 
Sbjct: 447 ITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPVVPNNITLMTLLPGCAML 506

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           A+   G  + +H  A++   +S++AV  +L+D Y++CG + LS  VF+++P  NV+ +  
Sbjct: 507 AAPARG--KEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRAVFDRLPRRNVITWNV 564

Query: 489 IMNGYSRNGMGREALDMLEVMIQRG-LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           ++  Y  +G+G EA+ + + M+      P++VTF+  LA C+HSGMV  G  +F SMK  
Sbjct: 565 LIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSGMVDRGLEMFRSMKRN 624

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQ-TPGGGDCMMWSSLLRSCRVHGNEIIGR 606
           +G++     ++C +D+LGRAG LD+A  ++    PG      WSS L +CR+H N  +G 
Sbjct: 625 HGVEPTPDLHACAVDILGRAGRLDEAYRIISSMEPGEQQVSAWSSFLGACRLHRNVALGE 684

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             A  L ELEP + + Y  + N YS  G +E S ++R     R ++++ G S IE++
Sbjct: 685 IAAERLFELEPDEASHYVLLCNIYSAAGLWEKSSEVRSRMRQRGVSKEPGCSWIELD 741



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 68/283 (24%), Positives = 126/283 (44%), Gaps = 20/283 (7%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAK 64
           ++P   TI  + P+C      +    +  Y        N +  N  +D + + G +++A+
Sbjct: 370 VVPSETTIAGVLPSCARSETFAGKEAVHGYVVKRGMADNPFVQNALMDLYARLGDMDAAR 429

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS------------- 111
            +F  +  RD+V++N LI+GC    H + A  L  EM   G    A+             
Sbjct: 430 WIFATIEPRDVVSWNTLITGCVVQGHIRDAFQLVREMQQQGRFTDAATEDGIAGADEEPV 489

Query: 112 -----TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                T  ++L  C+       G +IH   +      ++ +GS LVD+Y + G    +  
Sbjct: 490 VPNNITLMTLLPGCAMLAAPARGKEIHGYAVRHALDSDVAVGSALVDMYAKCGCLALSRA 549

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGM 225
           +FD LP RN+ TWN+++ A+      DE + ++++M A +  +PN ++F   +  CS   
Sbjct: 550 VFDRLPRRNVITWNVLIMAYGMHGLGDEAIALFDRMVASDEAKPNEVTFIAALAACSHSG 609

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           ++D G ++   + +   V+    +    VD     G L EA +
Sbjct: 610 MVDRGLEMFRSMKRNHGVEPTPDLHACAVDILGRAGRLDEAYR 652



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 50/190 (26%), Positives = 91/190 (47%), Gaps = 12/190 (6%)

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF--ESNIAVSCSLMDAYSRCGHIEL 470
           LD   L    K  S +A  +L + R +H  A++         AVS +L+ AY+RCG +  
Sbjct: 55  LDRFALPPAAK--SAAALRSLTAVRSIHGAALRHDLLDGPTPAVSNALLTAYARCGDLTA 112

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +  +F+ +PS + V F S++           ALD L  M+  G      T + VL  C+H
Sbjct: 113 ALALFDAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLTSFTLVSVLLACSH 172

Query: 531 -SGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL-----QQTPGG 583
            +  ++ G+     ++K+ +    +R  ++ ++ M  R G++D A+ L         PGG
Sbjct: 173 LAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQTLFGSVGATDVPGG 232

Query: 584 GDCMMWSSLL 593
           G  + W++++
Sbjct: 233 G-VVTWNTMV 241


>gi|147772562|emb|CAN67343.1| hypothetical protein VITISV_038220 [Vitis vinifera]
          Length = 732

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 183/625 (29%), Positives = 339/625 (54%), Gaps = 11/625 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y     ID + K+G +  A+ +FD++  +  VT+  +I+G  K      +L L+ +M 
Sbjct: 71  DVYVGTSLIDFYSKNGBIEVARLVFDQLLEKTAVTWTTIIAGYTKCGRSXVSLELFAQMR 130

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +       SSVLS CS   F   G QIH  VL  G  +++ + + L+D Y +     
Sbjct: 131 ETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNRVK 190

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               LFD++  +N+ +W  M+  + + S   E ++++ +M   G +P+G +   ++  C 
Sbjct: 191 AGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCG 250

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L++G+Q+H++ IK   ++ N FV N L+D Y+    L +AKK FD +   +VIS+N
Sbjct: 251 SLEALEQGRQVHAYTIKAN-LESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISYN 309

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y+  + + +ALELF  M++    PS+ +FV  L  ++    +   KQIHG + K 
Sbjct: 310 AMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKX 369

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     +   SAL D+Y KC+ ++ +  VFE    + +   N++          ++A+++
Sbjct: 370 GVSL-DLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKL 428

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLM 459
           +  +       +E T      A  ++A++NL S R     H   +K G +    V+ +L+
Sbjct: 429 YSTLQFSRQKPNEFTF-----AALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTNALV 483

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG IE + ++F      +VVC+ S+++ ++++G   EAL M   M++ G+ P+ V
Sbjct: 484 DMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYV 543

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL+ C+H+G V++G   FNSM   +GI    +HY+C++ +LGR+G L +A+E +++
Sbjct: 544 TFVAVLSACSHAGXVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEFIEK 602

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P     ++W SLL +CR+ GN  +G+  A + +  +P D   Y  +SN ++  G +   
Sbjct: 603 MPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMWADV 662

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
            ++R+   + ++ ++ G S IEVN+
Sbjct: 663 KKVRDRMDSSEVVKEPGRSWIEVNN 687



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 247/489 (50%), Gaps = 8/489 (1%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            +SV+  C+  G   +G Q+H  V+  GF  ++Y+G+ L+D Y + G    A  +FD+L 
Sbjct: 40  LASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNGBIEVARLVFDQLL 99

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           E+   TW  ++  + +  R    L ++ +M+   V P+      ++  CS+   L+ GKQ
Sbjct: 100 EKTAVTWTTIIAGYTKCGRSXVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQ 159

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H++V++ G  ++++ V N L+DFY+ C  +   +K FD + V ++ISW +++S Y    
Sbjct: 160 IHAYVLRRG-TEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNIISWTTMISGYMQNS 218

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
             ++A++LF  M     +P   +    L        +  G+Q+H Y  K   +     V+
Sbjct: 219 FDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSLEALEQGRQVHAYTIKANLESNEF-VK 277

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           + L DMY K N++  +  VF+    +++   N+++        + +A+E+F  M    + 
Sbjct: 278 NGLIDMYAKSNLLXDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEALELFHEM---RVR 334

Query: 413 LDEVTLSTTLKALSVSASA-NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
           L   +L T +  L VSAS   L   + +H   IK G   ++    +L+D YS+C +++ +
Sbjct: 335 LFPPSLLTFVSLLGVSASLFALELSKQIHGLIIKXGVSLDLFAGSALIDVYSKCSYVKDA 394

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             VFE++   ++V + ++  GY+++    EAL +   +      P++ TF  ++   ++ 
Sbjct: 395 RHVFEEMNEKDIVVWNAMFFGYTQHLENEEALKLYSTLQFSRQKPNEFTFAALITAASNL 454

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
             ++ GQ   N +  + G+D      + ++DM  + G +++A ++   +    D + W+S
Sbjct: 455 ASLRHGQQFHNQLVKM-GLDFCPFVTNALVDMYAKCGSIEEARKMFNSSI-WRDVVCWNS 512

Query: 592 LLRSCRVHG 600
           ++ +   HG
Sbjct: 513 MISTHAQHG 521



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 132/512 (25%), Positives = 256/512 (50%), Gaps = 13/512 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M  T ++P    ++++   C+ +  L     + +Y  +   ++++   N  ID + K   
Sbjct: 129 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNR 188

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + + +KLFD+M  ++++++  +ISG  +     +A+ L+ EM   G K      +SVL+ 
Sbjct: 189 VKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTS 248

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C +     +G Q+H   +      N ++ + L+D+Y +      A  +FD + E+N+ ++
Sbjct: 249 CGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAEQNVISY 308

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  +    +  E L ++++M+     P+ L+F  ++   +    L+  KQ+H  +IK
Sbjct: 309 NAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQIHGLIIK 368

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G V +++F  +AL+D YS C  + +A+  F+ +   D++ WN++   Y  +    +AL+
Sbjct: 369 XG-VSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLENEEALK 427

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+  +Q  R++P+  +F   +  AS   ++  G+Q H  + K+G D     V +AL DMY
Sbjct: 428 LYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMGLDFCPF-VTNALVDMY 486

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  IE +  +F S+  R + C NS++++    G  ++A+ MF  M+ EGI  + VT  
Sbjct: 487 AKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPNYVTFV 546

Query: 420 TTLKALSVSASANLGSCRL--LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
             L A S +     G      +    IK G E + A   SL+    R G +  + +  EK
Sbjct: 547 AVLSACSHAGXVEDGLNHFNSMPGFGIKPGTE-HYACVVSLL---GRSGKLFEAKEFIEK 602

Query: 478 IP-SPNVVCFTSIMNGYSRNG---MGREALDM 505
           +P  P  + + S+++     G   +G+ A +M
Sbjct: 603 MPIEPAAIVWRSLLSACRIAGNVELGKYAAEM 634



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 197/402 (49%), Gaps = 6/402 (1%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA 72
           T++  +C S+  L     + +Y  + N + N +  N  ID + KS  L  AKK+FD M  
Sbjct: 243 TSVLTSCGSLEALEQGRQVHAYTIKANLESNEFVKNGLIDMYAKSNLLXDAKKVFDVMAE 302

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           +++++YN +I G        +AL L+ EM       S  TF S+L V ++        QI
Sbjct: 303 QNVISYNAMIEGYSSQEKLSEALELFHEMRVRLFPPSLLTFVSLLGVSASLFALELSKQI 362

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  ++  G  L+L+ GS L+D+Y +      A  +F+E+ E+++  WN M   + +    
Sbjct: 363 HGLIIKXGVSLDLFAGSALIDVYSKCSYVKDARHVFEEMNEKDIVVWNAMFFGYTQHLEN 422

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           +E L++Y+ ++    +PN  +F  ++   S    L  G+Q H+ ++K+G +D   FV NA
Sbjct: 423 EEALKLYSTLQFSRQKPNEFTFAALITAASNLASLRHGQQFHNQLVKMG-LDFCPFVTNA 481

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           LVD Y+ CGS+ EA+K F+     DV+ WNS++S +A +    +AL +F  M     +P+
Sbjct: 482 LVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQPN 541

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +FV  L+  S  G V  G      +   G   G+ H  + +  + G+   +  +    
Sbjct: 542 YVTFVAVLSACSHAGXVEDGLNHFNSMPGFGIKPGTEHY-ACVVSLLGRSGKLFEAKEFI 600

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           E  P   +E    +  SLL +  I   VE+  +  +  I  D
Sbjct: 601 EKMP---IEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTD 639


>gi|15226200|ref|NP_180329.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216862|sp|Q9ZUW3.1|PP172_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g27610
 gi|3860271|gb|AAC73039.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330252926|gb|AEC08020.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 868

 Score =  314 bits (805), Expect = 9e-83,   Method: Compositional matrix adjust.
 Identities = 183/616 (29%), Positives = 338/616 (54%), Gaps = 10/616 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K  +    +K+FDEM  R++VT+  LISG  +     + L L+  M + G + ++
Sbjct: 135 VDTYMKGSNFKDGRKVFDEMKERNVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNS 194

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF++ L V +  G    G+Q+H  V+  G    + + + L++LY++ G   +A  LFD+
Sbjct: 195 FTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDK 254

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
              +++ TWN M+  +       E L M+  M+   V  +  SF  +++ C+    L   
Sbjct: 255 TEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFT 314

Query: 231 KQLHSHVIKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIY 288
           +QLH  V+K G++ D NI    AL+  YS C ++++A + F  I  V +V+SW +++S +
Sbjct: 315 EQLHCSVVKYGFLFDQNI--RTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGF 372

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
              D   +A++LF  M+    RP+  ++   L        V    ++H  V K  ++  S
Sbjct: 373 LQNDGKEEAVDLFSEMKRKGVRPNEFTYSVILTALP----VISPSEVHAQVVKTNYERSS 428

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             V +AL D Y K   +E +  VF     + +   ++++     +G  + A++MFG +  
Sbjct: 429 T-VGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTK 487

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
            GI  +E T S+ L   + + +A++G  +  H  AIKS  +S++ VS +L+  Y++ G+I
Sbjct: 488 GGIKPNEFTFSSILNVCAAT-NASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGNI 546

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           E + +VF++    ++V + S+++GY+++G   +ALD+ + M +R +  D VTF+ V A C
Sbjct: 547 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDGVTFIGVFAAC 606

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
            H+G+V+EG+  F+ M     I   ++H SCM+D+  RAG L+KA ++++  P      +
Sbjct: 607 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIENMPNPAGSTI 666

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W ++L +CRVH    +GR  A  ++ ++P D A Y  +SN Y+E G+++   ++R+    
Sbjct: 667 WRTILAACRVHKKTELGRLAAEKIIAMKPEDSAAYVLLSNMYAESGDWQERAKVRKLMNE 726

Query: 649 RKLTRDIGHSLIEVNS 664
           R + ++ G+S IEV +
Sbjct: 727 RNVKKEPGYSWIEVKN 742



 Score =  243 bits (620), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 160/555 (28%), Positives = 291/555 (52%), Gaps = 24/555 (4%)

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           V S  L +A  LFD+ P RD  +Y  L+ G  +    ++A  L+  +   G++   S FS
Sbjct: 38  VSSSRLYNAHNLFDKSPGRDRESYISLLFGFSRDGRTQEAKRLFLNIHRLGMEMDCSIFS 97

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           SVL V +       G Q+HC+ +  GF  ++ +G+ LVD YM+         +FDE+ ER
Sbjct: 98  SVLKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRKVFDEMKER 157

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK--- 231
           N+ TW  ++  +   S  DEVL ++ +M+ EG +PN  +F       ++G+L +EG    
Sbjct: 158 NVVTWTTLISGYARNSMNDEVLTLFMRMQNEGTQPNSFTF-----AAALGVLAEEGVGGR 212

Query: 232 --QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
             Q+H+ V+K G +D  I V+N+L++ Y  CG++ +A+  FD   V  V++WNS++S YA
Sbjct: 213 GLQVHTVVVKNG-LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYA 271

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
              L  +AL +F+ M+L   R S  SF   +   +    + F +Q+H  V K GF     
Sbjct: 272 ANGLDLEALGMFYSMRLNYVRLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQ- 330

Query: 350 HVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           ++++AL   Y KC  +  ++ +F E     ++    ++++  L +   ++AV++F  M  
Sbjct: 331 NIRTALMVAYSKCTAMLDALRLFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKR 390

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           +G+  +E T S  L AL V + +       +H   +K+ +E +  V  +L+DAY + G +
Sbjct: 391 KGVRPNEFTYSVILTALPVISPSE------VHAQVVKTNYERSSTVGTALLDAYVKLGKV 444

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           E + +VF  I   ++V +++++ GY++ G    A+ M   + + G+ P++ TF  +L  C
Sbjct: 445 EEAAKVFSGIDDKDIVAWSAMLAGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVC 504

Query: 529 --NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
              ++ M +  Q    ++KS   +D+     S ++ M  + G ++ AEE+ ++     D 
Sbjct: 505 AATNASMGQGKQFHGFAIKS--RLDSSLCVSSALLTMYAKKGNIESAEEVFKRQR-EKDL 561

Query: 587 MMWSSLLRSCRVHGN 601
           + W+S++     HG 
Sbjct: 562 VSWNSMISGYAQHGQ 576



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 123/440 (27%), Positives = 221/440 (50%), Gaps = 15/440 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  I+ ++K G++  A+ LFD+   + +VT+N +ISG        +AL ++  M  + +
Sbjct: 232 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNYV 291

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + S S+F+SV+ +C+N        Q+HC V+  GF  +  I + L+  Y +    + AL 
Sbjct: 292 RLSESSFASVIKLCANLKELRFTEQLHCSVVKYGFLFDQNIRTALMVAYSKCTAMLDALR 351

Query: 167 LFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           LF E+    N+ +W  M+  F +    +E + ++++MK +GV PN  ++  ++      +
Sbjct: 352 LFKEIGCVGNVVSWTAMISGFLQNDGKEEAVDLFSEMKRKGVRPNEFTYSVIL----TAL 407

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +    ++H+ V+K  + + +  V  AL+D Y   G + EA K F  I   D+++W++++
Sbjct: 408 PVISPSEVHAQVVKTNY-ERSSTVGTALLDAYVKLGKVEEAAKVFSGIDDKDIVAWSAML 466

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGYVTKLGF 344
           + YA       A+++F  +     +P+  +F   LN  A+   ++  GKQ HG+  K   
Sbjct: 467 AGYAQTGETEAAIKMFGELTKGGIKPNEFTFSSILNVCAATNASMGQGKQFHGFAIKSRL 526

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D  S+ V SAL  MY K   IES+  VF+    + L   NS+++     G    A+++F 
Sbjct: 527 D-SSLCVSSALLTMYAKKGNIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFK 585

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDA 461
            M    + +D VT      A + +     G      ++  C I    E N   SC ++D 
Sbjct: 586 EMKKRKVKMDGVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN---SC-MVDL 641

Query: 462 YSRCGHIELSHQVFEKIPSP 481
           YSR G +E + +V E +P+P
Sbjct: 642 YSRAGQLEKAMKVIENMPNP 661


>gi|147805537|emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
          Length = 906

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 179/621 (28%), Positives = 337/621 (54%), Gaps = 31/621 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ +N  +  + K      +K+LFDE+P R++V++N L S   +     +A+ L+ EMV
Sbjct: 191 DVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMV 250

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GIK +  + SS+++ C+     + G  IH  ++ LG+  + +  + LVD+Y ++G   
Sbjct: 251 LSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGYDWDPFSANALVDMYAKVGDLA 310

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+ +F+++ + ++ +WN ++         ++ L +  +MK                   
Sbjct: 311 DAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMK------------------- 351

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                   +QLHS ++K+  ++ ++FV+  LVD YS C  L +A+ +F+ +P  D+I+WN
Sbjct: 352 --------RQLHSSLMKMD-MESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWN 402

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I+S Y+ Y    +AL LF  M       +  +    L   +    V+  +Q+HG   K 
Sbjct: 403 AIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS 462

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF H  ++V ++L D YGKC+ +E +  +FE      L    S++T+    G  ++A+++
Sbjct: 463 GF-HSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKL 521

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M D  +  D    S+ L A +  ++   G  + LH   +K GF  +I    SL++ Y
Sbjct: 522 FLEMQDMELKPDRFVCSSLLNACANLSAFEQG--KQLHVHILKYGFVLDIFAGNSLVNMY 579

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG I+ + + F ++    +V +++++ G +++G GR+AL +   M++ G+ P+ +T +
Sbjct: 580 AKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGVSPNHITLV 639

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  CNH+G+V E +L F SM+ ++G    ++HY+CMID+LGRAG +++A EL+ + P 
Sbjct: 640 SVLGACNHAGLVTEAKLYFESMEELFGFKPMQEHYACMIDLLGRAGKINEAVELVNKMPF 699

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             +  +W +LL + R+H +  +GRR A +L  LEP     +  ++N Y+  G++E   ++
Sbjct: 700 EANASVWGALLGAARIHKDVELGRRAAEMLFILEPEKSGTHVLLANIYASAGKWENVAEV 759

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R      K+ ++ G S IEV 
Sbjct: 760 RRLMRDSKVKKEPGMSWIEVK 780



 Score =  252 bits (643), Expect = 5e-64,   Method: Compositional matrix adjust.
 Identities = 179/613 (29%), Positives = 301/613 (49%), Gaps = 47/613 (7%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           +KLL +  T  +L P       ++ S L D     N  +N+YS  R             A
Sbjct: 60  SKLLSQCCTTKSLRPGLQIHAHITKSGLSDDPSIRNHLINLYSKCRX---------FGYA 110

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +KL DE    D+V+++ LISG  +      AL  + EM   G+K +  TFSSVL  CS  
Sbjct: 111 RKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVKCNEFTFSSVLKACSIV 170

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                G Q+H  V+  GF  ++++ + LV +Y +    + +  LFDE+PERN+ +WN + 
Sbjct: 171 KDLRIGKQVHGVVVVSGFEGDVFVANTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALF 230

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
             + +     E + ++ +M   G++PN  S   MV  C+       GK +H ++IKLG+ 
Sbjct: 231 SCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMVNACTGLRDSSRGKIIHGYLIKLGY- 289

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           D + F ANALVD Y+  G L +A   F+ I   D++SWN++++    ++    ALEL  +
Sbjct: 290 DWDPFSANALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQ 349

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M+                           +Q+H  + K+  +   + V   L DMY KC+
Sbjct: 350 MK---------------------------RQLHSSLMKMDME-SDLFVSVGLVDMYSKCD 381

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           ++E +   F   P + L   N++++         +A+ +F  M  EGIG ++ TLST LK
Sbjct: 382 LLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFNQTTLSTILK 441

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
             S +    +  CR +H  ++KSGF S+I V  SL+D+Y +C H+E + ++FE+    ++
Sbjct: 442 --STAGLQVVHVCRQVHGLSVKSGFHSDIYVVNSLIDSYGKCSHVEDAERIFEECTIGDL 499

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFN 542
           V FTS++  Y++ G G EAL +   M    L PD+     +L  C +    ++G QL  +
Sbjct: 500 VSFTSMITAYAQYGQGEEALKLFLEMQDMELKPDRFVCSSLLNACANLSAFEQGKQLHVH 559

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            +K  YG   D    + +++M  + G +D A     +    G  + WS+++     HG+ 
Sbjct: 560 ILK--YGFVLDIFAGNSLVNMYAKCGSIDDAGRAFSELTERG-IVSWSAMIGGLAQHGH- 615

Query: 603 IIGRRVANILMEL 615
             GR+   +  ++
Sbjct: 616 --GRQALQLFNQM 626



 Score =  186 bits (472), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 153/585 (26%), Positives = 273/585 (46%), Gaps = 40/585 (6%)

Query: 81  LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140
           LI    +F    Q   + + +       ++ ++S +LS C        G+QIH  +   G
Sbjct: 27  LIQTVPQFSEDPQTTAILNLIDKGNFTPTSVSYSKLLSQCCTTKSLRPGLQIHAHITKSG 86

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
              +  I + L++LY +      A  L DE  E +L +W+ ++  + +       L  ++
Sbjct: 87  LSDDPSIRNHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFH 146

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M   GV+ N  +F  +++ CSI   L  GKQ+H  V+  G+ + ++FVAN LV  Y+ C
Sbjct: 147 EMHLLGVKCNEFTFSSVLKACSIVKDLRIGKQVHGVVVVSGF-EGDVFVANTLVVMYAKC 205

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
              +++K+ FD IP  +V+SWN++ S Y   D   +A+ LF+ M L   +P+  S    +
Sbjct: 206 DEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIKPNEFSLSSMV 265

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
           N  +   +   GK IHGY+ KLG+D       +AL DMY K   +  +++VFE      +
Sbjct: 266 NACTGLRDSSRGKIIHGYLIKLGYDWDPFSA-NALVDMYAKVGDLADAISVFEKIKQPDI 324

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
              N+++   +   + + A+E+ G M                              R LH
Sbjct: 325 VSWNAVIAGCVLHEHHEQALELLGQMK-----------------------------RQLH 355

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
              +K   ES++ VS  L+D YS+C  +E +   F  +P  +++ + +I++GYS+     
Sbjct: 356 SSLMKMDMESDLFVSVGLVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDM 415

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSC 559
           EAL +   M + G+  ++ T   +L       +V   + V   S+KS  G  +D    + 
Sbjct: 416 EALSLFVEMHKEGIGFNQTTLSTILKSTAGLQVVHVCRQVHGLSVKS--GFHSDIYVVNS 473

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN--EIIGRRVANILMELEP 617
           +ID  G+   ++ AE + ++    GD + ++S++ +   +G   E +   +    MEL+P
Sbjct: 474 LIDSYGKCSHVEDAERIFEECT-IGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELKP 532

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI--GHSLI 660
             F V S + N  + +  FE   Q+    L      DI  G+SL+
Sbjct: 533 DRF-VCSSLLNACANLSAFEQGKQLHVHILKYGFVLDIFAGNSLV 576



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 42/147 (28%), Positives = 81/147 (55%), Gaps = 4/147 (2%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+I++ N  ++ + K G ++ A + F E+  R +V+++ +I G  +  H +QAL L+++M
Sbjct: 567 LDIFAGNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQM 626

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMG 159
           +  G+  +  T  SVL  C++AG  TE  +++   +   FG        + ++DL  R G
Sbjct: 627 LKEGVSPNHITLVSVLGACNHAGLVTEA-KLYFESMEELFGFKPMQEHYACMIDLLGRAG 685

Query: 160 PSVRALDLFDELP-ERNLATWNLMLRA 185
               A++L +++P E N + W  +L A
Sbjct: 686 KINEAVELVNKMPFEANASVWGALLGA 712


>gi|328774749|gb|AEB39774.1| pentatricopeptide repeat protein 65 [Funaria hygrometrica]
          Length = 771

 Score =  314 bits (804), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 170/572 (29%), Positives = 313/572 (54%), Gaps = 4/572 (0%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           K+AL + + M+  G +  +  F  +L  C+      +G ++H  +L  G   N Y+ + L
Sbjct: 78  KEALGILNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 137

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           + +Y + G    A  +FD + +RN+ +W  M+ AF   ++  E  + Y  MK  G +P+ 
Sbjct: 138 LSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAGNQNLEAYKCYETMKLAGCKPDK 197

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++F  ++   +   LL  G+++H  + K G +++   V  +LV  Y+ CG + +A+  FD
Sbjct: 198 VTFVSLLNAFTNPELLQVGQKVHMEIAKAG-LELEPRVGTSLVGMYAKCGDISKAQVIFD 256

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  +V++W  +++ YA    +  ALEL  +MQ     P+  ++   L   +    +  
Sbjct: 257 KLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVAPNKITYTSILQGCTTPLALEH 316

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           GK++H Y+ + G+    + V +AL  MY KC  ++ +  +F   P R +    +++T   
Sbjct: 317 GKKVHRYIIQSGYGR-EIWVVNALITMYCKCGGLKEARKLFGDLPHRDVVTWTAMVTGYA 375

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
             G   +A+++F  M  +GI  D++T ++ L   S S+ A L   + +H   + +G+  +
Sbjct: 376 QLGFHDEAIDLFRRMQQQGIKPDKMTFTSALT--SCSSPAFLQEGKSIHQQLVHAGYSLD 433

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + +  +L+  Y++CG ++ +  VF ++   NVV +T+++ G +++G  REAL+  E M +
Sbjct: 434 VYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMITGCAQHGRCREALEYFEQMKK 493

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
           +G+ PDKVTF  VL+ C H G+V+EG+  F SM   YGI    +HYSC +D+LGRAG L+
Sbjct: 494 QGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHLE 553

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +AE ++   P      +W +LL +CR+H +   G R A  +++L+P D   Y  +SN Y+
Sbjct: 554 EAENVILTMPFQPGPSVWGALLSACRIHSDVERGERAAENVLKLDPDDDGAYVALSNIYA 613

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             G +E + ++R+    R + ++ G S IEV+
Sbjct: 614 AAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVD 645



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/451 (28%), Positives = 224/451 (49%), Gaps = 7/451 (1%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           + +L S  QPN     Y  N  +  + K G L  A+++FD +  R++V++  +I      
Sbjct: 120 AAILKSGIQPNR----YLENTLLSMYAKCGSLTDARRVFDGIRDRNIVSWTAMIEAFVAG 175

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
               +A   Y+ M   G K    TF S+L+  +N      G ++H  +   G  L   +G
Sbjct: 176 NQNLEAYKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQVGQKVHMEIAKAGLELEPRVG 235

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + LV +Y + G   +A  +FD+LPE+N+ TW L++  + +  + D  L +  KM+   V 
Sbjct: 236 TSLVGMYAKCGDISKAQVIFDKLPEKNVVTWTLLIAGYAQQGQVDVALELLEKMQQAEVA 295

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           PN +++  +++GC+  + L+ GK++H ++I+ G+    I+V NAL+  Y  CG L EA+K
Sbjct: 296 PNKITYTSILQGCTTPLALEHGKKVHRYIIQSGY-GREIWVVNALITMYCKCGGLKEARK 354

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +P  DV++W ++V+ YA      +A++LF RMQ    +P   +F   L   S    
Sbjct: 355 LFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTSCSSPAF 414

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  GK IH  +   G+    V++QSAL  MY KC  ++ +  VF     R++    +++T
Sbjct: 415 LQEGKSIHQQLVHAGYSL-DVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAWTAMIT 473

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
                G  ++A+E F  M  +GI  D+VT ++ L A +       G  +      +  G 
Sbjct: 474 GCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGR-KHFRSMYLDYGI 532

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           +  +      +D   R GH+E +  V   +P
Sbjct: 533 KPMVEHYSCFVDLLGRAGHLEEAENVILTMP 563



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 82/289 (28%), Positives = 144/289 (49%), Gaps = 4/289 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M   ++ P   T T++   CT+ + L     +  Y  Q      I+  N  I  + K G 
Sbjct: 289 MQQAEVAPNKITYTSILQGCTTPLALEHGKKVHRYIIQSGYGREIWVVNALITMYCKCGG 348

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+KLF ++P RD+VT+  +++G  +     +A+ L+  M   GIK    TF+S L+ 
Sbjct: 349 LKEARKLFGDLPHRDVVTWTAMVTGYAQLGFHDEAIDLFRRMQQQGIKPDKMTFTSALTS 408

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS+  F  EG  IH +++  G+ L++Y+ S LV +Y + G    A  +F+++ ERN+  W
Sbjct: 409 CSSPAFLQEGKSIHQQLVHAGYSLDVYLQSALVSMYAKCGSMDDARLVFNQMSERNVVAW 468

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG-KQLHSHVI 238
             M+    +  R  E L  + +MK +G++P+ ++F  ++  C+   L++EG K   S  +
Sbjct: 469 TAMITGCAQHGRCREALEYFEQMKKQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYL 528

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVS 286
             G +   +   +  VD     G L EA+     +P     S W +++S
Sbjct: 529 DYG-IKPMVEHYSCFVDLLGRAGHLEEAENVILTMPFQPGPSVWGALLS 576


>gi|225444744|ref|XP_002278128.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 597

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 174/553 (31%), Positives = 313/553 (56%), Gaps = 8/553 (1%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR-ALDLFDE 170
           +F+ +L+ CS+     +  +IH  V++ G G NL + + L+     + P++  A  +FD+
Sbjct: 31  SFNYLLNCCSS---LPDLSRIHALVVTNGCGQNLLLSTKLIITACCLAPTMDYARKMFDQ 87

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P+R++  WN ++R + +    +E L +Y+ M   G+ P+  +F ++VR C++   L EG
Sbjct: 88  MPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALREG 147

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++H +++K G+ D ++FV ++LV  YS  G  +  +  F  + V +++SW ++++ Y  
Sbjct: 148 KEVHCNIVKHGF-DSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQ 206

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                + L +F  M     +P+  + V  L   +    +  GK IHGY  KLG D   V 
Sbjct: 207 NRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLGVDP-DVS 265

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           + +AL  +YGKC  +E++ ++F+    ++L   N+++ +   +    +AV++F  M  E 
Sbjct: 266 LTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEK 325

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D +T+ + + A +   + N G  R +H    + G E N++++ +L+D Y++CG+I+L
Sbjct: 326 VDFDYITMVSVISACASLGALNTG--RWMHELVKRKGLEINVSITNALIDMYAKCGNIDL 383

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + +VFE++P  +VV +TS++   + +G G +AL +   M   G+ P+  TF  V   C H
Sbjct: 384 AREVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRH 443

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG+V+EG+  F SM   Y I    +H +CM+D+LGRAG L +A E + + P   D  +W 
Sbjct: 444 SGLVEEGRKHFESMMRDYSIMPGVEHCACMVDLLGRAGSLMEAYEFIDKMPVEPDVSVWG 503

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           +LL SCR+H N  +   VA  L  L+P     Y  +SN Y+E G +E + ++R+    R+
Sbjct: 504 ALLGSCRIHSNLELAELVAEKLFLLDPQTVTFYVLMSNIYAEAGRWEDAARLRKLMEERE 563

Query: 651 LTRDIGHSLIEVN 663
           L +  GHSL+EVN
Sbjct: 564 LKKIPGHSLVEVN 576



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 141/525 (26%), Positives = 265/525 (50%), Gaps = 23/525 (4%)

Query: 11  RTITTLAPTCTSIVPLSS--SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFD 68
           R+   L   C+S+  LS   +L++ + C  N  L   S+   I     +  ++ A+K+FD
Sbjct: 30  RSFNYLLNCCSSLPDLSRIHALVVTNGCGQNLLL---STKLIITACCLAPTMDYARKMFD 86

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           +MP RD+  +N LI G       ++AL LY  M   G+     TF  V+  C+      E
Sbjct: 87  QMPKRDVFLWNTLIRGYADAGPCEEALALYSNMHGAGLFPDNYTFPFVVRSCAVLSALRE 146

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G ++HC ++  GF  ++++ S LV +Y + G ++    +F E+  RN+ +W  ++  + +
Sbjct: 147 GKEVHCNIVKHGFDSDVFVQSSLVAMYSQSGETLGMELVFGEMVVRNIVSWTAVIAGYVQ 206

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
                E L ++ +M   G +PN ++   ++  C+    L+ GK +H + IKLG VD ++ 
Sbjct: 207 NRYFKEGLGVFREMVGSGTQPNAVTLVSVLPACAGLEFLNLGKLIHGYGIKLG-VDPDVS 265

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           + NAL+  Y  CG++  A+  FD + V +++SWN++++ Y   +   +A++LF RMQ  +
Sbjct: 266 LTNALIALYGKCGNVETARSLFDGMVVQNLVSWNAMIAAYEQNNAGANAVKLFRRMQAEK 325

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
                 + V  ++  +  G +  G+ +H  V + G +  +V + +AL DMY KC  I+ +
Sbjct: 326 VDFDYITMVSVISACASLGALNTGRWMHELVKRKGLEI-NVSITNALIDMYAKCGNIDLA 384

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VFE  P RS+    S++ +    G+ +DA+++F  M DEG+  +  T +    A   S
Sbjct: 385 REVFERLPCRSVVSWTSMIGACASHGHGEDALKLFSRMKDEGVKPNSFTFAAVFTACRHS 444

Query: 429 ASANLGSCR---LLHCCAIKSGFESNIAVSCSLM-DAYSRCGHIELSHQVFEKIP-SPNV 483
                G      ++   +I  G E      C+ M D   R G +  +++  +K+P  P+V
Sbjct: 445 GLVEEGRKHFESMMRDYSIMPGVE-----HCACMVDLLGRAGSLMEAYEFIDKMPVEPDV 499

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLI--PDKVTFLCVLA 526
             + +++ G  R       L++ E++ ++  +  P  VTF  +++
Sbjct: 500 SVWGALL-GSCRI---HSNLELAELVAEKLFLLDPQTVTFYVLMS 540


>gi|356546093|ref|XP_003541466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Glycine max]
          Length = 775

 Score =  313 bits (802), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 188/625 (30%), Positives = 336/625 (53%), Gaps = 11/625 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY---LYDEMV- 102
           +N  I+ + K  H + A  +FD +  +D+V++N LI+   + +    +L+   L+ ++V 
Sbjct: 48  ANSLINLYAKCSHFSKANLVFDSINNKDVVSWNCLINAFSQQQAHAPSLHVMHLFRQLVM 107

Query: 103 -SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               I  +A T + V +  S       G Q H   +      +++  S L+++Y + G  
Sbjct: 108 AHKTIVPNAHTLTGVFTAASTLSDSRAGRQAHALAVKTACSHDVFAASSLLNMYCKTGLV 167

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE--GVEPNGLSFCYMVR 219
             A DLFDE+PERN  +W  M+  +      DE   ++  M+ E  G   N   F  ++ 
Sbjct: 168 FEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMRHEEKGKNENEFVFTSVLS 227

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +  ML++ G+Q+HS  +K G V + + VANALV  Y  CGSL +A K+F+     + I
Sbjct: 228 ALTCYMLVNTGRQVHSLAMKNGLVCI-VSVANALVTMYVKCGSLEDALKTFELSGNKNSI 286

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +W+++V+ +A +     AL+LF+ M    + PS  + V  +N  S    +  G+Q+HGY 
Sbjct: 287 TWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINACSDACAIVEGRQMHGYS 346

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            KLG++   ++V SAL DMY KC  I  +   FE      +    S++T  + +G+ + A
Sbjct: 347 LKLGYEL-QLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVLWTSIITGYVQNGDYEGA 405

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + ++G M   G+  +++T+++ LKA S  A+ + G  + +H   IK  F   I +  +L 
Sbjct: 406 LNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQG--KQMHAGIIKYNFSLEIPIGSALS 463

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y++CG ++  +++F ++P+ +V+ + ++++G S+NG G E L++ E M   G  PD V
Sbjct: 464 AMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGLELFEKMCLEGTKPDNV 523

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ +L+ C+H G+V  G + F  M   + I    +HY+CM+D+L RAG L +A+E ++ 
Sbjct: 524 TFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAPTVEHYACMVDILSRAGKLHEAKEFIES 583

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
                   +W  LL + + H +  +G      LMEL  ++ + Y  +S+ Y+ +G++E  
Sbjct: 584 ATVDHGLCLWRILLAASKNHRDYDLGAYAGEKLMELGSLESSAYVLLSSIYTALGKWEDV 643

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
            ++R    AR +T++ G S IE+ S
Sbjct: 644 ERVRGMMKARGVTKEPGCSWIELKS 668



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 128/461 (27%), Positives = 223/461 (48%), Gaps = 15/461 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
           ++++++  ++ + K+G +  A+ LFDEMP R+ V++  +ISG        +A  L+  M 
Sbjct: 150 DVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELADEAFELFKLMR 209

Query: 102 -VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
               G  E+   F+SVLS  +       G Q+H   +  G    + + + LV +Y++ G 
Sbjct: 210 HEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLVCIVSVANALVTMYVKCGS 269

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL  F+    +N  TW+ M+  F +    D+ L+++  M   G  P+  +   ++  
Sbjct: 270 LEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGELPSEFTLVGVINA 329

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS    + EG+Q+H + +KLG+ ++ ++V +ALVD Y+ CGS+++A+K F+ I   DV+ 
Sbjct: 330 CSDACAIVEGRQMHGYSLKLGY-ELQLYVLSALVDMYAKCGSIVDARKGFECIQQPDVVL 388

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W SI++ Y        AL L+ +MQL    P+  +    L   S    +  GKQ+H  + 
Sbjct: 389 WTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAALDQGKQMHAGII 448

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K  F    + + SAL+ MY KC  ++    +F   P R +   N++++ L  +G   + +
Sbjct: 449 KYNFSL-EIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISGLSQNGRGNEGL 507

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVSCS-- 457
           E+F  M  EG   D VT    L A S     + G          K  F E NIA +    
Sbjct: 508 ELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRG------WVYFKMMFDEFNIAPTVEHY 561

Query: 458 --LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
             ++D  SR G +  + +  E     + +C   I+   S+N
Sbjct: 562 ACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKN 602



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 127/488 (26%), Positives = 235/488 (48%), Gaps = 13/488 (2%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+      +G  +H R+L  G   +  I + L++LY +     +A  +FD +  +++ +W
Sbjct: 20  CTRHKQLRKGRALHARILVTGSFSSTQIANSLINLYAKCSHFSKANLVFDSINNKDVVSW 79

Query: 180 NLMLRAFCELS--RPD-EVLRMYNK--MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N ++ AF +     P   V+ ++ +  M  + + PN  +   +    S       G+Q H
Sbjct: 80  NCLINAFSQQQAHAPSLHVMHLFRQLVMAHKTIVPNAHTLTGVFTAASTLSDSRAGRQAH 139

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           +  +K      ++F A++L++ Y   G + EA+  FD +P  + +SW +++S YA  +L 
Sbjct: 140 ALAVKTA-CSHDVFAASSLLNMYCKTGLVFEARDLFDEMPERNAVSWATMISGYASQELA 198

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN--VYFGKQIHGYVTKLGFDHGSVHVQ 352
            +A ELF  M+   K  +   FV     ++ T    V  G+Q+H    K G     V V 
Sbjct: 199 DEAFELFKLMRHEEKGKNENEFVFTSVLSALTCYMLVNTGRQVHSLAMKNGLV-CIVSVA 257

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL  MY KC  +E ++  FE +  ++    ++++T     G+   A+++F  M   G  
Sbjct: 258 NALVTMYVKCGSLEDALKTFELSGNKNSITWSAMVTGFAQFGDSDKALKLFYDMHQSGEL 317

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
             E TL   + A S + +   G  R +H  ++K G+E  + V  +L+D Y++CG I  + 
Sbjct: 318 PSEFTLVGVINACSDACAIVEG--RQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDAR 375

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           + FE I  P+VV +TSI+ GY +NG    AL++   M   G+IP+ +T   VL  C++  
Sbjct: 376 KGFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLA 435

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            + +G+ +   +   Y    +    S +  M  + G LD    +  + P   D + W+++
Sbjct: 436 ALDQGKQMHAGIIK-YNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMP-ARDVISWNAM 493

Query: 593 LRSCRVHG 600
           +     +G
Sbjct: 494 ISGLSQNG 501



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 76/292 (26%), Positives = 136/292 (46%), Gaps = 5/292 (1%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           LP   T+  +   C+    +     +  Y  +   +L +Y  +  +D + K G +  A+K
Sbjct: 317 LPSEFTLVGVINACSDACAIVEGRQMHGYSLKLGYELQLYVLSALVDMYAKCGSIVDARK 376

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
            F+ +   D+V +  +I+G  +    + AL LY +M   G+  +  T +SVL  CSN   
Sbjct: 377 GFECIQQPDVVLWTSIITGYVQNGDYEGALNLYGKMQLGGVIPNDLTMASVLKACSNLAA 436

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
             +G Q+H  ++   F L + IGS L  +Y + G       +F  +P R++ +WN M+  
Sbjct: 437 LDQGKQMHAGIIKYNFSLEIPIGSALSAMYAKCGSLDDGYRIFWRMPARDVISWNAMISG 496

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
             +  R +E L ++ KM  EG +P+ ++F  ++  CS   L+D G      +     +  
Sbjct: 497 LSQNGRGNEGLELFEKMCLEGTKPDNVTFVNLLSACSHMGLVDRGWVYFKMMFDEFNIAP 556

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVSI---YADYDL 293
            +     +VD  S  G L EAK+  +   VD  +  W  +++    + DYDL
Sbjct: 557 TVEHYACMVDILSRAGKLHEAKEFIESATVDHGLCLWRILLAASKNHRDYDL 608


>gi|15232006|ref|NP_187516.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207468|sp|Q9SS83.1|PP220_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g09040, mitochondrial; Flags: Precursor
 gi|5923669|gb|AAD56320.1|AC009326_7 hypothetical protein [Arabidopsis thaliana]
 gi|332641192|gb|AEE74713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 1028

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 184/622 (29%), Positives = 335/622 (53%), Gaps = 6/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NIY  +  +  + K   + +A K+F+ +  ++ V +N +I G        + + L+ +M 
Sbjct: 361 NIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMK 420

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           S G      TF+S+LS C+ +     G Q H  ++      NL++G+ LVD+Y + G   
Sbjct: 421 SSGYNIDDFTFTSLLSTCAASHDLEMGSQFHSIIIKKKLAKNLFVGNALVDMYAKCGALE 480

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F+ + +R+  TWN ++ ++ +     E   ++ +M   G+  +G      ++ C+
Sbjct: 481 DARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKACT 540

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L +GKQ+H   +K G +D ++   ++L+D YS CG + +A+K F  +P   V+S N
Sbjct: 541 HVHGLYQGKQVHCLSVKCG-LDRDLHTGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMN 599

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y+  +L  +A+ LF  M      PS  +F   +    +  ++  G Q HG +TK 
Sbjct: 600 ALIAGYSQNNLE-EAVVLFQEMLTRGVNPSEITFATIVEACHKPESLTLGTQFHGQITKR 658

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           GF     ++  +L  MY     +  + A+F E +  +S+     +M+    +G  ++A++
Sbjct: 659 GFSSEGEYLGISLLGMYMNSRGMTEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALK 718

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +  M  +G+  D+ T  T L+  SV +S   G  R +H        + +   S +L+D 
Sbjct: 719 FYKEMRHDGVLPDQATFVTVLRVCSVLSSLREG--RAIHSLIFHLAHDLDELTSNTLIDM 776

Query: 462 YSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           Y++CG ++ S QVF+++    NVV + S++NGY++NG   +AL + + M Q  ++PD++T
Sbjct: 777 YAKCGDMKGSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEIT 836

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL  C+H+G V +G+ +F  M   YGI+A   H +CM+D+LGR G L +A++ ++  
Sbjct: 837 FLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQ 896

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
               D  +WSSLL +CR+HG++I G   A  L+ELEP + + Y  +SN Y+  G +E + 
Sbjct: 897 NLKPDARLWSSLLGACRIHGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGCWEKAN 956

Query: 641 QIRETALARKLTRDIGHSLIEV 662
            +R+    R + +  G+S I+V
Sbjct: 957 ALRKVMRDRGVKKVPGYSWIDV 978



 Score =  257 bits (656), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 164/545 (30%), Positives = 278/545 (51%), Gaps = 8/545 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I+ +++ G L  A+ LF EM + D+V +N++ISG GK      A+  +  M    +K + 
Sbjct: 268 INTYIRLGKLKDARLLFGEMSSPDVVAWNVMISGHGKRGCETVAIEYFFNMRKSSVKSTR 327

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           ST  SVLS          G+ +H   + LG   N+Y+GS LV +Y +      A  +F+ 
Sbjct: 328 STLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEA 387

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           L E+N   WN M+R +       +V+ ++  MK+ G   +  +F  ++  C+    L+ G
Sbjct: 388 LEEKNDVFWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMG 447

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
            Q HS +IK      N+FV NALVD Y+ CG+L +A++ F+ +   D ++WN+I+  Y  
Sbjct: 448 SQFHSIIIKKKLAK-NLFVGNALVDMYAKCGALEDARQIFERMCDRDNVTWNTIIGSYVQ 506

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            +   +A +LF RM LC            L   +    +Y GKQ+H    K G D   +H
Sbjct: 507 DENESEAFDLFKRMNLCGIVSDGACLASTLKACTHVHGLYQGKQVHCLSVKCGLDR-DLH 565

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
             S+L DMY KC +I+ +  VF S P  S+   N+L+     + N+++AV +F  M+  G
Sbjct: 566 TGSSLIDMYSKCGIIKDARKVFSSLPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTRG 624

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA-VSCSLMDAYSRCGHIE 469
           +   E+T +T ++A     S  LG+    H    K GF S    +  SL+  Y     + 
Sbjct: 625 VNPSEITFATIVEACHKPESLTLGT--QFHGQITKRGFSSEGEYLGISLLGMYMNSRGMT 682

Query: 470 LSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
            +  +F ++ SP ++V +T +M+G+S+NG   EAL   + M   G++PD+ TF+ VL  C
Sbjct: 683 EACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGVLPDQATFVTVLRVC 742

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +    ++EG+ + +S+      D D    + +IDM  + G +  + ++  +     + + 
Sbjct: 743 SVLSSLREGRAI-HSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSSQVFDEMRRRSNVVS 801

Query: 589 WSSLL 593
           W+SL+
Sbjct: 802 WNSLI 806



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 130/534 (24%), Positives = 239/534 (44%), Gaps = 41/534 (7%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +D + K   ++ A+K FD +  +D+  +N ++S       P + L  +  +  + I 
Sbjct: 99  NAIVDLYAKCAQVSYAEKQFDFLE-KDVTAWNSMLSMYSSIGKPGKVLRSFVSLFENQIF 157

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TFS VLS C+       G QIHC ++ +G   N Y G  LVD+Y +      A  +
Sbjct: 158 PNKFTFSIVLSTCARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRISDARRV 217

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+ + + N   W  +   + +   P+E + ++ +M+ EG  P+ L+F             
Sbjct: 218 FEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEGHRPDHLAFV------------ 265

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
                                    +++ Y   G L +A+  F  +   DV++WN ++S 
Sbjct: 266 ------------------------TVINTYIRLGKLKDARLLFGEMSSPDVVAWNVMISG 301

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +        A+E FF M+    + +  +    L+      N+  G  +H    KLG    
Sbjct: 302 HGKRGCETVAIEYFFNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGL-AS 360

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +++V S+L  MY KC  +E++  VFE+   ++    N+++    H+G     +E+F  M 
Sbjct: 361 NIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNAMIRGYAHNGESHKVMELFMDMK 420

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             G  +D+ T ++ L   + S    +GS    H   IK     N+ V  +L+D Y++CG 
Sbjct: 421 SSGYNIDDFTFTSLLSTCAASHDLEMGS--QFHSIIIKKKLAKNLFVGNALVDMYAKCGA 478

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +E + Q+FE++   + V + +I+  Y ++    EA D+ + M   G++ D       L  
Sbjct: 479 LEDARQIFERMCDRDNVTWNTIIGSYVQDENESEAFDLFKRMNLCGIVSDGACLASTLKA 538

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           C H   + +G+ V + +    G+D D    S +IDM  + GI+  A ++    P
Sbjct: 539 CTHVHGLYQGKQV-HCLSVKCGLDRDLHTGSSLIDMYSKCGIIKDARKVFSSLP 591



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 119/474 (25%), Positives = 221/474 (46%), Gaps = 42/474 (8%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  +H + L LG      +G+ +VDLY +      A   FD L E+++  WN ML  +  
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFDFL-EKDVTAWNSMLSMYSS 137

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
           + +P +VLR +  +    + PN  +F  ++  C+    ++ G+Q+H  +IK+G ++ N +
Sbjct: 138 IGKPGKVLRSFVSLFENQIFPNKFTFSIVLSTCARETNVEFGRQIHCSMIKMG-LERNSY 196

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
              ALVD Y+ C  + +A++ F++I   + + W  + S Y    L  +A+ +F RM+   
Sbjct: 197 CGGALVDMYAKCDRISDARRVFEWIVDPNTVCWTCLFSGYVKAGLPEEAVLVFERMRDEG 256

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            RP   +FV  +N   R G +   + + G ++                      +V+  +
Sbjct: 257 HRPDHLAFVTVINTYIRLGKLKDARLLFGEMS--------------------SPDVVAWN 296

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           V +     G     C ++            A+E F  M    +     TL + L A+ + 
Sbjct: 297 VMI----SGHGKRGCETV------------AIEYFFNMRKSSVKSTRSTLGSVLSAIGIV 340

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           A+ +LG   ++H  AIK G  SNI V  SL+  YS+C  +E + +VFE +   N V + +
Sbjct: 341 ANLDLG--LVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEEKNDVFWNA 398

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY+ NG   + +++   M   G   D  TF  +L+ C  S  ++ G   F+S+    
Sbjct: 399 MIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAASHDLEMGSQ-FHSIIIKK 457

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            +  +    + ++DM  + G L+ A ++ ++     D + W++++ S     NE
Sbjct: 458 KLAKNLFVGNALVDMYAKCGALEDARQIFERMC-DRDNVTWNTIIGSYVQDENE 510



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 63/229 (27%), Positives = 106/229 (46%), Gaps = 18/229 (7%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           +LP   T  T+   C+ +  L     + S        L+  +SN  ID + K G +  + 
Sbjct: 728 VLPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKGSS 787

Query: 65  KLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           ++FDEM  R ++V++N LI+G  K  + + AL ++D M    I     TF  VL+ CS+A
Sbjct: 788 QVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHA 847

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDEL---PERNLAT 178
           G  ++G +I   ++   +G+   +   + +VDL  R G    A D  +     P+  L  
Sbjct: 848 GKVSDGRKIFEMMIG-QYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARL-- 904

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG------LSFCYMVRGC 221
           W+ +L A C +   D++    +  K   +EP        LS  Y  +GC
Sbjct: 905 WSSLLGA-CRI-HGDDIRGEISAEKLIELEPQNSSAYVLLSNIYASQGC 951


>gi|357437223|ref|XP_003588887.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355477935|gb|AES59138.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 697

 Score =  313 bits (801), Expect = 2e-82,   Method: Compositional matrix adjust.
 Identities = 190/627 (30%), Positives = 341/627 (54%), Gaps = 9/627 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFD--EMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           Q ++Y     I  +V     + AK +FD  E P  ++   N L++G  +     +AL L+
Sbjct: 35  QNDVYVCKNLISLYVSCNLFDYAKNVFDVIENPF-EISLCNGLMAGYTRNCMYDEALGLF 93

Query: 99  DEMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           D+++ +  +K  + T+ SVL  C        G  IH  ++  G  +++ +GS LV +Y +
Sbjct: 94  DKLMCYPCLKPDSYTYPSVLKACGGLRRVVLGQMIHTCLVKEGLMVDIVVGSSLVGMYAK 153

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
                 A+ LFDE+P++++A WN ++  + +  + +E LR +  M+  G EP+ ++    
Sbjct: 154 CNEFECAVKLFDEMPDKDVACWNTVISCYYQSGKFEEALRYFGMMRRFGFEPDSVTITTA 213

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C+  + LD G+++H  ++  G+  ++ FV+ ALVD Y  CG L  A + F+ +P   
Sbjct: 214 ISSCARLLDLDRGREIHKELVNSGF-RMDSFVSAALVDMYGKCGQLEMAIEVFEQMPNKT 272

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V++WNS+++ Y         ++LF RM     +P++ +    L   S++  +  GK +HG
Sbjct: 273 VVAWNSMINGYGFKGDGISCIQLFKRMYSEGVKPTLTTLTSTLMACSQSAQLLEGKFVHG 332

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           Y+ +       + + S+L D+Y KC  +ES+  +F+  P  +    N +++  +  G + 
Sbjct: 333 YIIRNRI-QPDIFLNSSLMDLYFKCGKVESAETIFKLMPKTTTVSWNVMISGYVTEGKLF 391

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           DA+ +FG M    +  D +T ++ L A S  A+   G  R +H   ++    +N  V  +
Sbjct: 392 DALRLFGEMSKSFVEPDAITFTSVLAACSQLAALEKG--REIHNLIVERNLGNNEVVMGA 449

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++CG +E +  VF+ +P  ++V +TS++  Y  +G   EAL++   M+Q  + PD
Sbjct: 450 LLDMYAKCGAVEEAFGVFKCLPERDLVSWTSMITAYGSHGRVYEALELFAEMLQSNVKPD 509

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           +VTFL +L+ C+H+G+V +G   FN M +VYGI    +HYSC+I +LGRAG L +A E+L
Sbjct: 510 RVTFLAILSACSHAGLVDDGLYHFNQMINVYGIIPRIEHYSCLITLLGRAGRLHEAYEIL 569

Query: 578 QQTPG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           Q  P    D  + S+L  +CR+H N  +G  +A  L++ +P D + Y  +SN Y+  G++
Sbjct: 570 QSNPEISDDFQLLSTLFSACRLHKNLDLGVEIAENLIDKDPDDSSTYIILSNMYASFGKW 629

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
           +    +R       L ++ G S IE+N
Sbjct: 630 DEVRMVRSKMKDLGLKKNPGCSWIEIN 656



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 242/493 (49%), Gaps = 8/493 (1%)

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           A     +L    N+    +G  +H +V++LG   ++Y+   L+ LY+       A ++FD
Sbjct: 3   ARKLIPLLRASVNSKSLKQGKVLHQKVVTLGLQNDVYVCKNLISLYVSCNLFDYAKNVFD 62

Query: 170 ELPER-NLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLL 227
            +     ++  N ++  +      DE L +++K M    ++P+  ++  +++ C     +
Sbjct: 63  VIENPFEISLCNGLMAGYTRNCMYDEALGLFDKLMCYPCLKPDSYTYPSVLKACGGLRRV 122

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G+ +H+ ++K G + V+I V ++LV  Y+ C     A K FD +P  DV  WN+++S 
Sbjct: 123 VLGQMIHTCLVKEGLM-VDIVVGSSLVGMYAKCNEFECAVKLFDEMPDKDVACWNTVISC 181

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y       +AL  F  M+     P   +    ++  +R  ++  G++IH  +   GF   
Sbjct: 182 YYQSGKFEEALRYFGMMRRFGFEPDSVTITTAISSCARLLDLDRGREIHKELVNSGFRMD 241

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           S  V +AL DMYGKC  +E ++ VFE  P +++   NS++      G+    +++F  M 
Sbjct: 242 SF-VSAALVDMYGKCGQLEMAIEVFEQMPNKTVVAWNSMINGYGFKGDGISCIQLFKRMY 300

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            EG+       + T   ++ S SA L   + +H   I++  + +I ++ SLMD Y +CG 
Sbjct: 301 SEGV--KPTLTTLTSTLMACSQSAQLLEGKFVHGYIIRNRIQPDIFLNSSLMDLYFKCGK 358

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +E +  +F+ +P    V +  +++GY   G   +AL +   M +  + PD +TF  VLA 
Sbjct: 359 VESAETIFKLMPKTTTVSWNVMISGYVTEGKLFDALRLFGEMSKSFVEPDAITFTSVLAA 418

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+    +++G+ + N +     +  +      ++DM  + G +++A  + +  P   D +
Sbjct: 419 CSQLAALEKGREIHNLIVE-RNLGNNEVVMGALLDMYAKCGAVEEAFGVFKCLP-ERDLV 476

Query: 588 MWSSLLRSCRVHG 600
            W+S++ +   HG
Sbjct: 477 SWTSMITAYGSHG 489


>gi|449458534|ref|XP_004147002.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 989

 Score =  313 bits (801), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/622 (28%), Positives = 337/622 (54%), Gaps = 4/622 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++  +  +D + K G +  A K+F  MP ++ VT+N+L++G  +       L L+  M
Sbjct: 246 LDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSM 305

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +   +K +  T ++VL  C+N+    +G  IH  ++  G+  N +IG  LVD+Y + G +
Sbjct: 306 MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLA 365

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
           + A+ +F  + + ++  W+ ++    +  + +E +++++ M+     PN  + C ++   
Sbjct: 366 IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAA 425

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L  G+ +H+ V K G+ + ++ V+NALV  Y   G + +  K ++ +   D+ISW
Sbjct: 426 TNTGNLQYGQSIHACVWKYGF-ETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISW 484

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+ +S   D  +    L +F+ M      P++ +F+  L   S   +V++G+Q+H ++ K
Sbjct: 485 NAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIK 544

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D  +  V +AL DMY KC  +E +   F     R L     ++T+   +   + A+ 
Sbjct: 545 NQLDDNNF-VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALN 603

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            F  M  EG+  +E TL+  L   S  AS   G  + LH    KSG  S++ V  +L+D 
Sbjct: 604 YFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG--QQLHSMVFKSGHVSDMFVGSALVDM 661

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG +E +  +FE +   + + + +I+ GY++NG G +AL    +M+  G+ PD VTF
Sbjct: 662 YAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTF 721

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
             +L+ C+H G+V+EG+  FNSM   +GI     H +CM+D+LGR G  D+ E+ +Q+  
Sbjct: 722 TGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQ 781

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              + ++W ++L + ++H N ++G + AN L EL+P + + Y  +SN ++  G ++   +
Sbjct: 782 LSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKR 841

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R    ++ + ++ G S +E N
Sbjct: 842 VRSLMSSKGVKKEPGCSWVEAN 863



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 156/555 (28%), Positives = 283/555 (50%), Gaps = 8/555 (1%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           NP  +++ S   ++ + K  +   A+ +  +MP RD+V++  LI G         ++YL+
Sbjct: 144 NPDSHLWVS--LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLF 201

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EM + GI  +  T ++ L  CS       G Q+H +   LG  L+L++GS LVDLY + 
Sbjct: 202 QEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC 261

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  +F  +PE+N  TWN++L  + +      VL+++  M    V+ N  +   ++
Sbjct: 262 GEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVL 321

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           +GC+    L +G+ +HS +IK G+ + N F+   LVD YS CG  I+A   F  I   D+
Sbjct: 322 KGCANSKNLKQGQVIHSLIIKCGY-EGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDI 380

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           + W+++++         ++++LF  M+L    P+  +    L+ A+ TGN+ +G+ IH  
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHAC 440

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V K GF+   V V +AL  MY K   +     ++ES   R L   N+ ++ L   G    
Sbjct: 441 VWKYGFE-TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDR 499

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            + +F  M++EG   +  T  + L + S     + G  R +H   IK+  + N  V  +L
Sbjct: 500 PLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG--RQVHAHIIKNQLDDNNFVCTAL 557

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++C ++E +   F ++   ++  +T I+  Y++   G +AL+    M Q G+ P++
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            T    L+GC+    ++ GQ + +SM    G  +D    S ++DM  + G +++AE L +
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQL-HSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFE 676

Query: 579 QTPGGGDCMMWSSLL 593
                 D + W++++
Sbjct: 677 ALI-RRDTIAWNTII 690



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 237/475 (49%), Gaps = 19/475 (4%)

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K+    +SS+L  C++         IH  ++      + ++   LV++Y +   S  A  
Sbjct: 109 KKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARL 168

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +  ++P+R++ +W  +++        ++ + ++ +M+ EG+ PN  +    ++ CS+ M 
Sbjct: 169 VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMA 228

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           LD GKQ+H+   KLG + +++FV +ALVD Y+ CG +  A K F  +P  + ++WN +++
Sbjct: 229 LDLGKQMHAQAFKLGLL-LDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLN 287

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA    +   L+LF  M     + +  +    L   + + N+  G+ IH  + K G++ 
Sbjct: 288 GYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYE- 346

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
           G+  +   L DMY KC +   ++ VF++     +   ++L+T L   G  ++++++F  M
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
                  ++ T+ + L A   + + NL   + +H C  K GFE+++AVS +L+  Y + G
Sbjct: 407 RLGDTLPNQYTICSLLSA--ATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNG 464

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +    +++E +   +++ + + ++G    GM    L +   M++ G IP+  TF+ +L 
Sbjct: 465 CVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 527 GCN-----HSGMVKEGQLVFNSMKSVYGIDADRQHYSC--MIDMLGRAGILDKAE 574
            C+     H G      ++ N +        D  ++ C  +IDM  +   L+ A+
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQL--------DDNNFVCTALIDMYAKCMYLEDAD 571


>gi|449491572|ref|XP_004158941.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1004

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 177/622 (28%), Positives = 337/622 (54%), Gaps = 4/622 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++  +  +D + K G +  A K+F  MP ++ VT+N+L++G  +       L L+  M
Sbjct: 246 LDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSM 305

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +   +K +  T ++VL  C+N+    +G  IH  ++  G+  N +IG  LVD+Y + G +
Sbjct: 306 MELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYEGNEFIGCGLVDMYSKCGLA 365

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
           + A+ +F  + + ++  W+ ++    +  + +E +++++ M+     PN  + C ++   
Sbjct: 366 IDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAA 425

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L  G+ +H+ V K G+ + ++ V+NALV  Y   G + +  K ++ +   D+ISW
Sbjct: 426 TNTGNLQYGQSIHACVWKYGF-ETDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISW 484

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+ +S   D  +    L +F+ M      P++ +F+  L   S   +V++G+Q+H ++ K
Sbjct: 485 NAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYGRQVHAHIIK 544

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D  +  V +AL DMY KC  +E +   F     R L     ++T+   +   + A+ 
Sbjct: 545 NQLDDNNF-VCTALIDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALN 603

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            F  M  EG+  +E TL+  L   S  AS   G  + LH    KSG  S++ V  +L+D 
Sbjct: 604 YFRQMQQEGVKPNEFTLAGCLSGCSSLASLEGG--QQLHSMVFKSGHVSDMFVGSALVDM 661

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG +E +  +FE +   + + + +I+ GY++NG G +AL    +M+  G+ PD VTF
Sbjct: 662 YAKCGCMEEAEALFEALIRRDTIAWNTIICGYAQNGQGNKALTAFRMMLDEGISPDGVTF 721

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
             +L+ C+H G+V+EG+  FNSM   +GI     H +CM+D+LGR G  D+ E+ +Q+  
Sbjct: 722 TGILSACSHQGLVEEGKEHFNSMYRDFGISPTVDHCACMVDILGRVGKFDELEDFIQKMQ 781

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              + ++W ++L + ++H N ++G + AN L EL+P + + Y  +SN ++  G ++   +
Sbjct: 782 LSQNALIWETVLGASKMHNNLVLGEKAANKLFELQPEEESSYILLSNIFATEGRWDDVKR 841

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R    ++ + ++ G S +E N
Sbjct: 842 VRSLMSSKGVKKEPGCSWVEAN 863



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 156/555 (28%), Positives = 283/555 (50%), Gaps = 8/555 (1%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           NP  +++ S   ++ + K  +   A+ +  +MP RD+V++  LI G         ++YL+
Sbjct: 144 NPDSHLWVS--LVNVYAKCRYSAYARLVLAKMPDRDVVSWTALIQGLVAEGFANDSIYLF 201

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EM + GI  +  T ++ L  CS       G Q+H +   LG  L+L++GS LVDLY + 
Sbjct: 202 QEMQNEGIMPNEFTLATGLKACSLCMALDLGKQMHAQAFKLGLLLDLFVGSALVDLYAKC 261

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  +F  +PE+N  TWN++L  + +      VL+++  M    V+ N  +   ++
Sbjct: 262 GEIELASKMFIGMPEQNDVTWNVLLNGYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVL 321

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           +GC+    L +G+ +HS +IK G+ + N F+   LVD YS CG  I+A   F  I   D+
Sbjct: 322 KGCANSKNLKQGQVIHSLIIKCGY-EGNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDI 380

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           + W+++++         ++++LF  M+L    P+  +    L+ A+ TGN+ +G+ IH  
Sbjct: 381 VVWSALITCLDQQGQSEESIKLFHLMRLGDTLPNQYTICSLLSAATNTGNLQYGQSIHAC 440

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V K GF+   V V +AL  MY K   +     ++ES   R L   N+ ++ L   G    
Sbjct: 441 VWKYGFE-TDVAVSNALVTMYMKNGCVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDR 499

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            + +F  M++EG   +  T  + L + S     + G  R +H   IK+  + N  V  +L
Sbjct: 500 PLTIFYHMLEEGFIPNMYTFISILGSCSCLFDVHYG--RQVHAHIIKNQLDDNNFVCTAL 557

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++C ++E +   F ++   ++  +T I+  Y++   G +AL+    M Q G+ P++
Sbjct: 558 IDMYAKCMYLEDADVAFNRLSVRDLFTWTVIITNYAQTNQGEKALNYFRQMQQEGVKPNE 617

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            T    L+GC+    ++ GQ + +SM    G  +D    S ++DM  + G +++AE L +
Sbjct: 618 FTLAGCLSGCSSLASLEGGQQL-HSMVFKSGHVSDMFVGSALVDMYAKCGCMEEAEALFE 676

Query: 579 QTPGGGDCMMWSSLL 593
                 D + W++++
Sbjct: 677 ALI-RRDTIAWNTII 690



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/475 (24%), Positives = 237/475 (49%), Gaps = 19/475 (4%)

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K+    +SS+L  C++         IH  ++      + ++   LV++Y +   S  A  
Sbjct: 109 KKKLKYYSSMLRECASKRSLGVAKAIHGLIVKDVINPDSHLWVSLVNVYAKCRYSAYARL 168

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +  ++P+R++ +W  +++        ++ + ++ +M+ EG+ PN  +    ++ CS+ M 
Sbjct: 169 VLAKMPDRDVVSWTALIQGLVAEGFANDSIYLFQEMQNEGIMPNEFTLATGLKACSLCMA 228

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           LD GKQ+H+   KLG + +++FV +ALVD Y+ CG +  A K F  +P  + ++WN +++
Sbjct: 229 LDLGKQMHAQAFKLGLL-LDLFVGSALVDLYAKCGEIELASKMFIGMPEQNDVTWNVLLN 287

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA    +   L+LF  M     + +  +    L   + + N+  G+ IH  + K G++ 
Sbjct: 288 GYAQRGDVTGVLKLFCSMMELDVKCNEFTLTTVLKGCANSKNLKQGQVIHSLIIKCGYE- 346

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
           G+  +   L DMY KC +   ++ VF++     +   ++L+T L   G  ++++++F  M
Sbjct: 347 GNEFIGCGLVDMYSKCGLAIDAIGVFKTIKKPDIVVWSALITCLDQQGQSEESIKLFHLM 406

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
                  ++ T+ + L A   + + NL   + +H C  K GFE+++AVS +L+  Y + G
Sbjct: 407 RLGDTLPNQYTICSLLSA--ATNTGNLQYGQSIHACVWKYGFETDVAVSNALVTMYMKNG 464

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +    +++E +   +++ + + ++G    GM    L +   M++ G IP+  TF+ +L 
Sbjct: 465 CVHDGTKLYESMVDRDLISWNAYLSGLHDCGMYDRPLTIFYHMLEEGFIPNMYTFISILG 524

Query: 527 GCN-----HSGMVKEGQLVFNSMKSVYGIDADRQHYSC--MIDMLGRAGILDKAE 574
            C+     H G      ++ N +        D  ++ C  +IDM  +   L+ A+
Sbjct: 525 SCSCLFDVHYGRQVHAHIIKNQL--------DDNNFVCTALIDMYAKCMYLEDAD 571


>gi|224141133|ref|XP_002323929.1| predicted protein [Populus trichocarpa]
 gi|222866931|gb|EEF04062.1| predicted protein [Populus trichocarpa]
          Length = 770

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 189/619 (30%), Positives = 336/619 (54%), Gaps = 14/619 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  ++ + KSG    A  +F+ +   D+V++N ++SGC   +  + A     +M S G+
Sbjct: 102 SNSLMNMYCKSGQFCKALCIFENLTHPDIVSWNTVLSGC---QTSEDAFSFACKMNSSGV 158

Query: 107 KESASTFSSVLSVCSN--AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
              A T+++VLS C      ++  G+Q+H  ++  GF   +++G+ L+ +Y R G  V A
Sbjct: 159 VFDAVTYTTVLSFCWRHVEAYFLIGLQLHSCIVKFGFDCEVFVGNALISMYSRWGHLVEA 218

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
             +F+E+  R+L +WN M+  + +      E + M+ +M   G+E + +SF   V  C  
Sbjct: 219 RRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAISMFLQMFRGGMELDRISFTSAVSACGY 278

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              L+  +Q+H   IK    + ++ V+N L+  Y  C  + +A+  F  +   +V+SW +
Sbjct: 279 EKNLELARQIHGLSIKTRH-EKHVAVSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTT 337

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++SI        +A+  F  M+L    P+  +FV  ++  +    V  GK +HG+ TK G
Sbjct: 338 MISIDEA-----EAVSFFNEMRLDGVYPNDVTFVGLIHAITIGELVVQGKMVHGFCTKTG 392

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           F   S +V +++  MY K   ++ SV VF+    + +   N+L++  +H+G  ++A+  F
Sbjct: 393 FSSKS-NVCNSIITMYAKFKSMQDSVKVFQELKYQDIIAWNALISGFVHNGLCQEAIRAF 451

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
              + E    ++ +  + L A+  +   +L   +  H   IK G  ++  VS +L+D Y+
Sbjct: 452 FSGLIES-KPNQYSFGSILNAIGAAEDVSLKYGQRCHSQIIKLGLNTDPIVSSALLDMYA 510

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           + G I  S +VF + P  +   +T+I++ Y+R+G     ++  E M +  + PD +TFL 
Sbjct: 511 KRGSICESQKVFVETPQQSQFAWTTIISAYARHGDYESVMNWFEEMRRLEVRPDSITFLS 570

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L  C   GMV  G  +F SM   Y I+   +HYSC++DMLGRAG L++AE L+   PGG
Sbjct: 571 ILTACGRRGMVDMGCHLFGSMVKDYQIEPSAEHYSCLVDMLGRAGRLEEAERLMSHIPGG 630

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +  SLL +CRVHGN  +G RVA+ LME+EP +   Y  +SN Y+EIG++E+  ++R
Sbjct: 631 PGLSVLQSLLGACRVHGNVDMGERVADALMEMEPTESGSYVLMSNLYAEIGKWEMVAKVR 690

Query: 644 ETALARKLTRDIGHSLIEV 662
           +    + + +++G S ++V
Sbjct: 691 KRMRVKGVKKEVGFSWVDV 709



 Score =  155 bits (391), Expect = 9e-35,   Method: Compositional matrix adjust.
 Identities = 118/473 (24%), Positives = 220/473 (46%), Gaps = 16/473 (3%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR-HPKQALYLYDEMV 102
           ++  N  I  + + GHL  A+++F+EM  RD+V++N +ISG  +   +  +A+ ++ +M 
Sbjct: 199 VFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQEGIYGLEAISMFLQMF 258

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++    +F+S +S C          QIH   +      ++ + + L+  Y +     
Sbjct: 259 RGGMELDRISFTSAVSACGYEKNLELARQIHGLSIKTRHEKHVAVSNVLISTYFKCQVIE 318

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  + ERN+ +W  M+          E +  +N+M+ +GV PN ++F  ++   +
Sbjct: 319 DARLVFQNMNERNVVSWTTMISI-----DEAEAVSFFNEMRLDGVYPNDVTFVGLIHAIT 373

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           IG L+ +GK +H    K G+   +  V N+++  Y+   S+ ++ K F  +   D+I+WN
Sbjct: 374 IGELVVQGKMVHGFCTKTGFSSKS-NVCNSIITMYAKFKSMQDSVKVFQELKYQDIIAWN 432

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF--ASRTGNVYFGKQIHGYVT 340
           +++S +    L  +A+  FF   L   +P+  SF   LN   A+   ++ +G++ H  + 
Sbjct: 433 ALISGFVHNGLCQEAIRAFFS-GLIESKPNQYSFGSILNAIGAAEDVSLKYGQRCHSQII 491

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLG +   + V SAL DMY K   I  S  VF   P +S     +++++    G+ +  +
Sbjct: 492 KLGLNTDPI-VSSALLDMYAKRGSICESQKVFVETPQQSQFAWTTIISAYARHGDYESVM 550

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
             F  M    +  D +T  + L A       ++G C L          E +      L+D
Sbjct: 551 NWFEEMRRLEVRPDSITFLSILTACGRRGMVDMG-CHLFGSMVKDYQIEPSAEHYSCLVD 609

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDMLEVM 509
              R G +E + ++   IP  P +    S++     +G   MG    D L  M
Sbjct: 610 MLGRAGRLEEAERLMSHIPGGPGLSVLQSLLGACRVHGNVDMGERVADALMEM 662



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 110/440 (25%), Positives = 197/440 (44%), Gaps = 35/440 (7%)

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G S  A +L D+ P RNL+   +           + +L  +     E    N L  C 
Sbjct: 28  KTGESSHAHNLLDKTPHRNLSFQII----------KEHLLSGFINNIDEFTVANALKAC- 76

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             RG  +      G Q+H   I   +V+V I V+N+L++ Y   G   +A   F+ +   
Sbjct: 77  --RGYPL-----LGSQIHGFSIIHEFVNVTI-VSNSLMNMYCKSGQFCKALCIFENLTHP 128

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF--GKQ 334
           D++SWN+++S     +   DA     +M          ++   L+F  R    YF  G Q
Sbjct: 129 DIVSWNTVLSGCQTSE---DAFSFACKMNSSGVVFDAVTYTTVLSFCWRHVEAYFLIGLQ 185

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H  + K GFD   V V +AL  MY +   +  +  VFE    R L   N++++     G
Sbjct: 186 LHSCIVKFGFD-CEVFVGNALISMYSRWGHLVEARRVFEEMKTRDLVSWNAMISGYSQEG 244

Query: 395 NIK-DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
               +A+ MF  M   G+ LD ++ ++ + A       NL   R +H  +IK+  E ++A
Sbjct: 245 IYGLEAISMFLQMFRGGMELDRISFTSAVSACGY--EKNLELARQIHGLSIKTRHEKHVA 302

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           VS  L+  Y +C  IE +  VF+ +   NVV +T++++         EA+     M   G
Sbjct: 303 VSNVLISTYFKCQVIEDARLVFQNMNERNVVSWTTMISIDE-----AEAVSFFNEMRLDG 357

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           + P+ VTF+ ++       +V +G++V +   +  G  +     + +I M  +   +  +
Sbjct: 358 VYPNDVTFVGLIHAITIGELVVQGKMV-HGFCTKTGFSSKSNVCNSIITMYAKFKSMQDS 416

Query: 574 EELLQQTPGGGDCMMWSSLL 593
            ++ Q+     D + W++L+
Sbjct: 417 VKVFQELK-YQDIIAWNALI 435


>gi|297818116|ref|XP_002876941.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297322779|gb|EFH53200.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 652

 Score =  312 bits (800), Expect = 3e-82,   Method: Compositional matrix adjust.
 Identities = 196/607 (32%), Positives = 332/607 (54%), Gaps = 17/607 (2%)

Query: 65  KLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           +LFDEMP RD V++N +ISG   CGK  +   +  L+ +M   G      +FS +L   +
Sbjct: 2   RLFDEMPQRDSVSWNTMISGYTSCGKLEN---SWCLFTDMKRCGCYVDGYSFSRLLKGIA 58

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
           +A  +  G Q+H  V+  G+  N+Y+GS LVD+Y +      A   F E+ E N  +WN 
Sbjct: 59  SAKRFDLGEQVHGLVVKGGYECNVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNA 118

Query: 182 MLRAFCELSRPDEVLRMYN--KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           ++  F ++        +    +MKA     +G +F  ++      M  +  KQ+H+ V+K
Sbjct: 119 LIAGFVQVRDTKTAFWLLGLMEMKAAVTMDDG-TFAPLLTLLDDPMFCNLLKQVHAKVLK 177

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFDAL 298
           LG ++  I + NA++  Y+ CG + +AK+ FD +    D+ISWNS+++  + ++    A 
Sbjct: 178 LG-LEHEITICNAMISSYANCGLVSDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAF 236

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           ELF  M        I ++   ++  S   +  FGK +HG V K G +     V +AL  M
Sbjct: 237 ELFTEMHRNWIETDIYTYTGIVSACSGEEHQSFGKSLHGLVIKKGLEQ-VTSVSNALISM 295

Query: 359 YGK--CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           Y +    V++ ++++FES   + L   NS+MT    +G  +DAV+ F ++    I +D+ 
Sbjct: 296 YIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDY 355

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
             S  L++ S  A+  LG  +  H  A KS FESN  V+ SL+  YS+CG IE + + FE
Sbjct: 356 AFSAVLRSCSDLATLQLG--QQTHALATKSSFESNEFVTSSLILMYSKCGVIENARKCFE 413

Query: 477 KIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           +I S  N + + +++ GY+++G G+ +LD+   M  + +  D VTF  +L  C+H+G+++
Sbjct: 414 QISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQ 473

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG  + NSM+ VY I    +HY+  +D+LGRAG+++K +EL++  P   D M+  + L  
Sbjct: 474 EGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLNPDPMVLKTFLGV 533

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           CR  G   +  +VAN L+E+EP D   Y  +S+ YS++ ++E    +++    R + +  
Sbjct: 534 CRACGEIEMATQVANHLLEIEPEDHFAYVSLSHMYSDLKKWEEKANVKKMMKERGVKKVP 593

Query: 656 GHSLIEV 662
           G S IE+
Sbjct: 594 GWSWIEI 600



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 199/442 (45%), Gaps = 8/442 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
           N+Y  +  +D + K   +  A   F E+   + V++N LI+G  + R  K A +L   M 
Sbjct: 81  NVYVGSSLVDMYAKCERVEDAFGAFMEILEPNSVSWNALIAGFVQVRDTKTAFWLLGLME 140

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +   +     TF+ +L++  +  F     Q+H +VL LG    + I + ++  Y   G  
Sbjct: 141 MKAAVTMDDGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLEHEITICNAMISSYANCGLV 200

Query: 162 VRALDLFDEL-PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
             A  +FD L   ++L +WN M+    +  + +    ++ +M    +E +  ++  +V  
Sbjct: 201 SDAKRVFDGLGGSKDLISWNSMIAGLSKHEQKESAFELFTEMHRNWIETDIYTYTGIVSA 260

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA--CGSLIEAKKSFDFIPVDDV 278
           CS       GK LH  VIK G   V   V+NAL+  Y     G + +A   F+ +   D+
Sbjct: 261 CSGEEHQSFGKSLHGLVIKKGLEQVTS-VSNALISMYIQFPTGVMKDALSLFESLKPKDL 319

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWNSI++ ++   L  DA++ F  ++         +F   L   S    +  G+Q H  
Sbjct: 320 VSWNSIMTGFSQNGLSEDAVKFFRYLRSSNIEVDDYAFSAVLRSCSDLATLQLGQQTHAL 379

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLHSGNIK 397
            TK  F+     V S+L  MY KC VIE++   FE    + +    N+++      G+ +
Sbjct: 380 ATKSSFESNEF-VTSSLILMYSKCGVIENARKCFEQISSKHNTIAWNAMILGYAQHGSGQ 438

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            ++++F  M ++ + LD VT +  L A S +     G   LL+        +  +    +
Sbjct: 439 VSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEG-LELLNSMEPVYKIQPRMEHYAA 497

Query: 458 LMDAYSRCGHIELSHQVFEKIP 479
            +D   R G +    ++ E +P
Sbjct: 498 AVDLLGRAGLVNKVKELIESMP 519



 Score = 68.9 bits (167), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 51/233 (21%), Positives = 110/233 (47%), Gaps = 3/233 (1%)

Query: 47  SNRTIDDFVK--SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           SN  I  +++  +G +  A  LF+ +  +D+V++N +++G  +    + A+  +  + S 
Sbjct: 289 SNALISMYIQFPTGVMKDALSLFESLKPKDLVSWNSIMTGFSQNGLSEDAVKFFRYLRSS 348

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            I+     FS+VL  CS+      G Q H       F  N ++ S L+ +Y + G    A
Sbjct: 349 NIEVDDYAFSAVLRSCSDLATLQLGQQTHALATKSSFESNEFVTSSLILMYSKCGVIENA 408

Query: 165 LDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
              F+++  + N   WN M+  + +       L ++++M  + V+ + ++F  ++  CS 
Sbjct: 409 RKCFEQISSKHNTIAWNAMILGYAQHGSGQVSLDLFSQMCNQNVKLDHVTFTAILTACSH 468

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             L+ EG +L + +  +  +   +    A VD     G + + K+  + +P++
Sbjct: 469 TGLIQEGLELLNSMEPVYKIQPRMEHYAAAVDLLGRAGLVNKVKELIESMPLN 521


>gi|413922867|gb|AFW62799.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 882

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 179/630 (28%), Positives = 334/630 (53%), Gaps = 16/630 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA----RDMVTYNLLISGCGKFRHPKQALYLY 98
           +++ +N  +  +   G ++ A+++FDE       R+ V++N +IS   K      A+ ++
Sbjct: 134 DVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNTMISAYVKNDQSGDAIGVF 193

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EMV  G + +   FS V++ C+ +     G Q+H  V+  G+  +++  + LVD+Y ++
Sbjct: 194 REMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTGYEKDVFTANALVDMYSKL 253

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  +F+++P  ++ +WN  +            L +  +MK+ G+ PN  +   ++
Sbjct: 254 GDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELLLQMKSSGLVPNVFTLSSVL 313

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           + C+     + G+Q+H  ++K    D + FVA  LVD Y+  G L +A+K FDF+P  D+
Sbjct: 314 KACAGAGAFNLGRQIHGFMVK-AVADFDEFVAVGLVDMYAKHGFLDDARKVFDFMPRRDL 372

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQ-----LCRKRPSIRSFVEFLNFASRTGNVYFGK 333
           I WN+++S  +      + L LF RM+     L   R ++ S    L   + +  +   +
Sbjct: 373 ILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLASV---LKSTASSEAICHTR 429

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           Q+H    K+G    S HV + L D Y KC  ++ ++ VF+ +    +    ++MT+L   
Sbjct: 430 QVHALAEKIGLLSDS-HVINGLIDSYWKCGQLDYAIKVFKESRSDDIISSTTMMTALSQC 488

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
            + +DA+++F  M+ +G+  D   LS+ L A +  ++   G  + +H   IK  F S++ 
Sbjct: 489 DHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAYEQG--KQVHAHLIKRQFTSDVF 546

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
              +L+ AY++CG IE +   F  +P   +V +++++ G +++G G+ ALD+   M+  G
Sbjct: 547 AGNALVYAYAKCGSIEDADMAFSGLPERGIVSWSAMIGGLAQHGHGKRALDLFHRMLDEG 606

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           + P+ +T   VL+ CNH+G+V + +  F SMK  +GID   +HY+CMID+LGRAG L+ A
Sbjct: 607 VAPNHITLTSVLSACNHAGLVDDAKKYFESMKETFGIDRTEEHYACMIDILGRAGKLEDA 666

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
            EL+   P   +  +W +LL + RVH +  +GR  A  L  LEP     +  ++N Y+  
Sbjct: 667 MELVNNMPFQANAAVWGALLGASRVHRDPELGRMAAEKLFTLEPEKSGTHVLLANTYASA 726

Query: 634 GEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           G ++   ++R+      + ++   S +E+ 
Sbjct: 727 GMWDEMAKVRKLMKDSNVKKEPAMSWVEIK 756



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 147/561 (26%), Positives = 270/561 (48%), Gaps = 18/561 (3%)

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           ++A+ +FDE+P    V+++ L++       P+ AL  +  M   G+  +      VL   
Sbjct: 54  SAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLKCA 113

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL----PERNL 176
            +  F   G Q+H   ++     ++++ + LV +Y   G    A  +FDE      ERN 
Sbjct: 114 PDVRF---GAQVHALAVATRLVHDVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNA 170

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +WN M+ A+ +  +  + + ++ +M   G  PN   F  +V  C+    L+ G+Q+H  
Sbjct: 171 VSWNTMISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGA 230

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           V++ G+ + ++F ANALVD YS  G +  A   F+ +P  DV+SWN+ +S    +     
Sbjct: 231 VVRTGY-EKDVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHR 289

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           ALEL  +M+     P++ +    L   +  G    G+QIHG++ K   D     V   L 
Sbjct: 290 ALELLLQMKSSGLVPNVFTLSSVLKACAGAGAFNLGRQIHGFMVKAVADFDEF-VAVGLV 348

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD-- 414
           DMY K   ++ +  VF+  P R L   N+L++   H G   + + +F  M  EG+ LD  
Sbjct: 349 DMYAKHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVN 408

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
             TL++ LK  S ++S  +   R +H  A K G  S+  V   L+D+Y +CG ++ + +V
Sbjct: 409 RTTLASVLK--STASSEAICHTRQVHALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKV 466

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F++  S +++  T++M   S+   G +A+ +   M+++GL PD      +L  C      
Sbjct: 467 FKESRSDDIISSTTMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACTSLSAY 526

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           ++G+ V   +       +D    + ++    + G ++ A+      P  G  + WS+++ 
Sbjct: 527 EQGKQVHAHLIK-RQFTSDVFAGNALVYAYAKCGSIEDADMAFSGLPERG-IVSWSAMIG 584

Query: 595 SCRVHGNEIIGRRVANILMEL 615
               HG+   G+R  ++   +
Sbjct: 585 GLAQHGH---GKRALDLFHRM 602



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 147/565 (26%), Positives = 272/565 (48%), Gaps = 26/565 (4%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  T  S L+    +     G  +H  +L    GL     + L+ LY R      A  +
Sbjct: 2   RTPETIGSALARFGTSRSLFAGAHLHSHLLK--SGLLAGFSNHLLTLYSRCRLPSAARAV 59

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P+    +W+ ++ A+     P + L  +  M+  GV  N  +   +++ C+  +  
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNGMPRDALLAFRAMRGRGVPCNEFALPVVLK-CAPDVRF 118

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FIPVD---DVISWNS 283
             G Q+H+  +    V  ++FVANALV  Y   G + EA++ FD ++ V    + +SWN+
Sbjct: 119 --GAQVHALAVATRLVH-DVFVANALVAVYGGFGMVDEARRMFDEYVGVGGERNAVSWNT 175

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S Y   D   DA+ +F  M    +RP+   F   +N  + + ++  G+Q+HG V + G
Sbjct: 176 MISAYVKNDQSGDAIGVFREMVWSGERPNEFGFSCVVNACTGSRDLEAGRQVHGAVVRTG 235

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           ++   V   +AL DMY K   IE +  VFE  P   +   N+ ++  +  G+   A+E+ 
Sbjct: 236 YEK-DVFTANALVDMYSKLGDIEMAATVFEKMPAADVVSWNAFISGCVTHGHDHRALELL 294

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M   G+  +  TLS+ LKA + + + NLG  R +H   +K+  + +  V+  L+D Y+
Sbjct: 295 LQMKSSGLVPNVFTLSSVLKACAGAGAFNLG--RQIHGFMVKAVADFDEFVAVGLVDMYA 352

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD--KVTF 521
           + G ++ + +VF+ +P  +++ + ++++G S +G   E L +   M + GL  D  + T 
Sbjct: 353 KHGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTL 412

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
             VL     S  +   + V +++    G+ +D    + +ID   + G LD A ++ +++ 
Sbjct: 413 ASVLKSTASSEAICHTRQV-HALAEKIGLLSDSHVINGLIDSYWKCGQLDYAIKVFKESR 471

Query: 582 G----GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
                    MM  + L  C  HG + I   V  +   LEP  F V S + N  + +  +E
Sbjct: 472 SDDIISSTTMM--TALSQCD-HGEDAIKLFVQMLRKGLEPDSF-VLSSLLNACTSLSAYE 527

Query: 638 VSMQIRETALARKLTRDI--GHSLI 660
              Q+    + R+ T D+  G++L+
Sbjct: 528 QGKQVHAHLIKRQFTSDVFAGNALV 552


>gi|449468888|ref|XP_004152153.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
 gi|449515059|ref|XP_004164567.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Cucumis sativus]
          Length = 721

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 180/596 (30%), Positives = 329/596 (55%), Gaps = 4/596 (0%)

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           +FDEMP R+ V++  LI G  +     +A  L+  +   G + +   F++VL +  +  +
Sbjct: 2   VFDEMPERNTVSFVTLIHGYAQSNKFIEAFELFARLHGEGHELNPFVFTTVLKLLVSMEW 61

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
              G  +H  VL +G+G N +IG+ L+D Y   G    A ++FDE+  +++ +W  M+ +
Sbjct: 62  AELGRIVHGCVLKVGYGSNTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIAS 121

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           + E     E L  +++M+  G +PN  +F  +++ C      D GK +H  V+K  + + 
Sbjct: 122 YAENDCFSEALEFFSQMRVAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNY-ER 180

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +++V   L++ Y+ CG   +A ++F  +P +DVI W+ ++S +A       ALE+F +M+
Sbjct: 181 DLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMR 240

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                P+  +F   L  ++   ++   K IHG+  K G     V V +AL   Y KC  I
Sbjct: 241 RAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLS-TDVFVSNALMACYAKCGCI 299

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           E S+ +FE+   R+    N+++ S +  G+ + A+ +F  M+   +   EVT S+ L+A 
Sbjct: 300 EQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRAC 359

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +  A+  LG    +HC   K+ +  ++AV  +L+D Y++CG I+ +  +F+ +   + V 
Sbjct: 360 ATLAALELG--LQVHCLTAKTIYGQDVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVS 417

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + +I+ GYS +G+G EA+ M  +M +    PD++TF+ VL+ C+++G + EG+  F SMK
Sbjct: 418 WNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGKQYFTSMK 477

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             YGI+   +HY+CM+ ++GR+G LD+A + ++  P     M+W +LL +C +H +  +G
Sbjct: 478 QDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIPFEPSVMIWRALLGACVIHNDVELG 537

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           R  A  ++ELEP D A +  +SN Y+    +     +R+    + + ++ G S IE
Sbjct: 538 RISAQRVLELEPRDEASHVLLSNIYARARRWGNVAYVRKHMKRKGVKKEPGLSWIE 593



 Score =  166 bits (419), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 218/451 (48%), Gaps = 4/451 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N +     ID +  SG ++ A+++FDE+ ++DMV++  +I+   +     +AL  + +M 
Sbjct: 80  NTFIGTALIDAYSVSGCVSMAREVFDEISSKDMVSWTGMIASYAENDCFSEALEFFSQMR 139

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G K +  TF+ VL  C     +  G  +HC VL   +  +LY+G  L++LY R G + 
Sbjct: 140 VAGFKPNNFTFAGVLKACLGLQNFDAGKTVHCSVLKTNYERDLYVGVGLLELYTRCGDND 199

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F ++P+ ++  W+ M+  F +  + ++ L ++ +M+   V PN  +F  +++  +
Sbjct: 200 DAWRAFGDMPKNDVIPWSFMISRFAQSGQSEKALEIFCQMRRAFVIPNQFTFSSVLQASA 259

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               LD  K +H H +K G +  ++FV+NAL+  Y+ CG + ++ + F+ +   + +SWN
Sbjct: 260 DIESLDLSKTIHGHALKAG-LSTDVFVSNALMACYAKCGCIEQSMELFEALSDRNDVSWN 318

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I+  Y        AL LF  M   + + +  ++   L   +    +  G Q+H    K 
Sbjct: 319 TIIVSYVQLGDGERALSLFSNMLRYQVQATEVTYSSILRACATLAALELGLQVHCLTAKT 378

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            +    V V +AL DMY KC  I+ +  +F+    R     N+++      G   +A++M
Sbjct: 379 IYGQ-DVAVGNALIDMYAKCGSIKDARFMFDMLDLRDKVSWNAIICGYSMHGLGVEAIKM 437

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M +     DE+T    L A S +   + G  +         G E  +     ++   
Sbjct: 438 FNLMKETKCKPDELTFVGVLSACSNTGRLDEGK-QYFTSMKQDYGIEPCMEHYTCMVWLM 496

Query: 463 SRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
            R G+++ + +  E IP  P+V+ + +++  
Sbjct: 497 GRSGNLDQAVKFIEDIPFEPSVMIWRALLGA 527



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 85/346 (24%), Positives = 178/346 (51%), Gaps = 7/346 (2%)

Query: 34  SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           S  + N + ++Y     ++ + + G  + A + F +MP  D++ ++ +IS   +    ++
Sbjct: 172 SVLKTNYERDLYVGVGLLELYTRCGDNDDAWRAFGDMPKNDVIPWSFMISRFAQSGQSEK 231

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           AL ++ +M    +  +  TFSSVL   ++         IH   L  G   ++++ + L+ 
Sbjct: 232 ALEIFCQMRRAFVIPNQFTFSSVLQASADIESLDLSKTIHGHALKAGLSTDVFVSNALMA 291

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
            Y + G   ++++LF+ L +RN  +WN ++ ++ +L   +  L +++ M    V+   ++
Sbjct: 292 CYAKCGCIEQSMELFEALSDRNDVSWNTIIVSYVQLGDGERALSLFSNMLRYQVQATEVT 351

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           +  ++R C+    L+ G Q+H    K  +   ++ V NAL+D Y+ CGS+ +A+  FD +
Sbjct: 352 YSSILRACATLAALELGLQVHCLTAKTIYGQ-DVAVGNALIDMYAKCGSIKDARFMFDML 410

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
            + D +SWN+I+  Y+ + L  +A+++F  M+  + +P   +FV  L+  S TG +  GK
Sbjct: 411 DLRDKVSWNAIICGYSMHGLGVEAIKMFNLMKETKCKPDELTFVGVLSACSNTGRLDEGK 470

Query: 334 QIHGYVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVAVFESAP 376
           Q   Y T +  D+G    +   + +  + G+   ++ +V   E  P
Sbjct: 471 Q---YFTSMKQDYGIEPCMEHYTCMVWLMGRSGNLDQAVKFIEDIP 513


>gi|224122590|ref|XP_002330519.1| predicted protein [Populus trichocarpa]
 gi|222872453|gb|EEF09584.1| predicted protein [Populus trichocarpa]
          Length = 726

 Score =  312 bits (799), Expect = 4e-82,   Method: Compositional matrix adjust.
 Identities = 177/601 (29%), Positives = 325/601 (54%), Gaps = 4/601 (0%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A++LF  MP ++ V++N L++G  +    K+ L L+ +M     K S  T S+VL  C+N
Sbjct: 4   AERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKGCAN 63

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
            G   EG  +H   L  G  ++ ++G  LVD+Y + G    AL +F ++   ++  W+ M
Sbjct: 64  TGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVVAWSAM 123

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +    +     E   +++ M+ +G  PN  +   +V   +    L  G+ +H  + K G+
Sbjct: 124 ITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCICKYGF 183

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
              N+ V+N L+  Y     + +  K F+ +   D++SWN+++S + D         +F+
Sbjct: 184 ESDNL-VSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQTCGRGPRIFY 242

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           +M L   +P++ +F+  L   S   +  FGKQ+H ++ K   D     V +AL DMY K 
Sbjct: 243 QMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIKNSSDDDDF-VGTALVDMYAKA 301

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +E +   F+    R +     +++    +   + AV+ F  M  EGI  +E TL++ L
Sbjct: 302 RCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEYTLASCL 361

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
              S  A+   G  R LH  A+K+G   +I V  +L+D Y +CG +E +  +F+ + S +
Sbjct: 362 SGCSHMATLENG--RQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGLISRD 419

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V + +I++GYS++G G +AL+   +M+  G++PD+ TF+ VL+ C+  G+V+EG+  F+
Sbjct: 420 IVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGKKRFD 479

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           SM  +YGI+   +HY+CM+D+LGRAG  ++ +  +++       ++W ++L +C++HGN 
Sbjct: 480 SMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYSLIWETVLGACKLHGNV 539

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
             G + A  L E+EP+  + Y  +SN ++  G ++    IR    +R + ++ G S +EV
Sbjct: 540 DFGEKAAKKLFEMEPMMDSSYILLSNIFASKGRWDDVRNIRALMTSRGIKKEPGCSWVEV 599

Query: 663 N 663
           +
Sbjct: 600 D 600



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 127/456 (27%), Positives = 218/456 (47%), Gaps = 4/456 (0%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T++T+   C +   L    +L +   +   +++ +     +D + K G +  A K+F ++
Sbjct: 53  TLSTVLKGCANTGSLREGKVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKI 112

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
              D+V ++ +I+G  +  H ++A  L+  M   G + +  T SS++S  +N G    G 
Sbjct: 113 RNPDVVAWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQ 172

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            IH  +   GF  +  + +PL+ +YM+         +F+ +   +L +WN +L  F +  
Sbjct: 173 SIHGCICKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMTNPDLVSWNALLSGFYDSQ 232

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                 R++ +M  EG +PN  +F  ++R CS  +  + GKQ+H+H+IK    D + FV 
Sbjct: 233 TCGRGPRIFYQMLLEGFKPNMFTFISVLRSCSSLLDPEFGKQVHAHIIK-NSSDDDDFVG 291

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALVD Y+    L +A  +FD +   D+ SW  I+S YA  D    A++ F +MQ    +
Sbjct: 292 TALVDMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIK 351

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P+  +    L+  S    +  G+Q+H    K G   G + V SAL D+YGKC  +E + A
Sbjct: 352 PNEYTLASCLSGCSHMATLENGRQLHAVAVKAG-HFGDIFVGSALVDLYGKCGCMEHAEA 410

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F+    R +   N++++     G  + A+E F  M+ EGI  DE T    L A S    
Sbjct: 411 IFKGLISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGL 470

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              G  R      I  G   +I     ++D   R G
Sbjct: 471 VEEGKKRFDSMSKI-YGINPSIEHYACMVDILGRAG 505



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 78/320 (24%), Positives = 147/320 (45%), Gaps = 25/320 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFV----- 55
           ML     P + T  ++  +C+S        LLD         +I  ++   DDFV     
Sbjct: 244 MLLEGFKPNMFTFISVLRSCSS--------LLDPEFGKQVHAHIIKNSSDDDDFVGTALV 295

Query: 56  ----KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
               K+  L  A   FD +  RD+ ++ ++ISG  +    ++A+  + +M   GIK +  
Sbjct: 296 DMYAKARCLEDAGVAFDRLVNRDIFSWTVIISGYAQTDQAEKAVKYFRQMQREGIKPNEY 355

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T +S LS CS+      G Q+H   +  G   ++++GS LVDLY + G    A  +F  L
Sbjct: 356 TLASCLSGCSHMATLENGRQLHAVAVKAGHFGDIFVGSALVDLYGKCGCMEHAEAIFKGL 415

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             R++ +WN ++  + +  + ++ L  +  M +EG+ P+  +F  ++  CS   L++EGK
Sbjct: 416 ISRDIVSWNTIISGYSQHGQGEKALEAFRMMLSEGIMPDEATFIGVLSACSFMGLVEEGK 475

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK---KSFDFIPVDDVISWNSIV--- 285
           +    + K+  ++ +I     +VD     G   E K   +  +  P    + W +++   
Sbjct: 476 KRFDSMSKIYGINPSIEHYACMVDILGRAGKFNEVKIFIEEMNLTPYS--LIWETVLGAC 533

Query: 286 SIYADYDLIFDALELFFRMQ 305
            ++ + D    A +  F M+
Sbjct: 534 KLHGNVDFGEKAAKKLFEME 553



 Score = 92.4 bits (228), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 123/229 (53%), Gaps = 4/229 (1%)

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +E +  +F   P ++    N+L+      G+ K  +++F  M +      + TLST LK 
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            + + S   G  ++LH  A++SG E +  + CSL+D YS+CG +  + +VF KI +P+VV
Sbjct: 61  CANTGSLREG--KVLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIRNPDVV 118

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +++++ G  + G G+EA ++  +M ++G  P++ T   +++   + G ++ GQ +   +
Sbjct: 119 AWSAMITGLDQQGHGQEAAELFHLMRRKGARPNQFTLSSLVSTATNMGDLRYGQSIHGCI 178

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
              YG ++D    + +I M  ++  ++   ++ +      D + W++LL
Sbjct: 179 -CKYGFESDNLVSNPLIMMYMKSRCVEDGNKVFEAMT-NPDLVSWNALL 225



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 35/137 (25%), Positives = 71/137 (51%), Gaps = 4/137 (2%)

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +EL+ ++F  +P  N V + +++NGY++ G G++ L +   M +      K T   VL G
Sbjct: 1   MELAERLFFGMPEKNGVSWNALLNGYAQLGDGKKVLKLFCKMKECETKFSKFTLSTVLKG 60

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C ++G ++EG+ V +++    G + D      ++DM  + G +  A ++  +     D +
Sbjct: 61  CANTGSLREGK-VLHALALRSGCEIDEFLGCSLVDMYSKCGTVYDALKVFTKIR-NPDVV 118

Query: 588 MWSSLLRSC--RVHGNE 602
            WS+++     + HG E
Sbjct: 119 AWSAMITGLDQQGHGQE 135


>gi|302761610|ref|XP_002964227.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
 gi|300167956|gb|EFJ34560.1| hypothetical protein SELMODRAFT_81196 [Selaginella moellendorffii]
          Length = 736

 Score =  311 bits (798), Expect = 6e-82,   Method: Compositional matrix adjust.
 Identities = 185/616 (30%), Positives = 329/616 (53%), Gaps = 13/616 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A  +F  +   + V++ L+++   +  H ++AL  Y  MV  G++   + F
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
              + VCS++    +G  +H  +L       ++ +G+ L+ +Y R      A   FDE+ 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKM---KAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           ++ L TWN ++  +         L++Y  M     EG++P+ ++F   +  CS+   + +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDISQ 181

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G+++ +  +  G+   +I V NAL++ YS CGSL  A+K FD +   DVI+WN+++S YA
Sbjct: 182 GREIEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                  ALELF RM     +P++ +F+  L   +   ++  G+ IH  V + G++   V
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLV 300

Query: 350 HVQSALTDMYGKCNV-IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
            + + L +MY KC+  +E +  VFE    R +   N L+ + +  G  KDA+++F  M  
Sbjct: 301 -IGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           E +  +E+TLS  L A +V  +   G  + +H        ++++ +  SLM+ Y+RCG +
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQG--KAVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           + +  VF  I   ++V +++++  Y+++G  R  L+    ++Q GL  D VT +  L+ C
Sbjct: 418 DDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSAC 477

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +H GM+KEG   F SM   +G+  D +H+ CM+D+L RAG L+ AE L+   P   D + 
Sbjct: 478 SHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVA 537

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVD-FAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           W+SLL  C++H +     RVA+ L ELE  D  +  + +SN Y+E G ++    +R+T  
Sbjct: 538 WTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRN 594

Query: 648 ARKLTRDIGHSLIEVN 663
            R   ++ G S IE+N
Sbjct: 595 RRAARKNPGCSYIEIN 610



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 222/456 (48%), Gaps = 9/456 (1%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    AL +F  +   N  +W L++ AF       E L  Y +M  EG+ P+G  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F   +  CS    L +G+ LH+ +++   ++ +I +  AL+  Y+ C  L  A+K+FD +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETQLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK---RPSIRSFVEFLNFASRTGNVY 330
               +++WN++++ Y+       AL+++  M        +P   +F   L   S  G++ 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACSVVGDIS 180

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G++I       G+   S+ VQ+AL +MY KC  +ES+  VF+    R +   N++++  
Sbjct: 181 QGREIEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
              G    A+E+F  M       + VT    L A   +   +L   R +H    + G+ES
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTA--CTNLEDLEQGRAIHRKVKEHGYES 297

Query: 451 NIAVSCSLMDAYSRC-GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           ++ +   L++ Y++C   +E + QVFE++ + +V+ +  ++  Y + G  ++ALD+ + M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
               + P+++T   VL+ C   G  ++G+ V +++ +     AD    + +++M  R G 
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAV-HALIASGRCKADVVLENSLMNMYNRCGS 416

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           LD    +          + WS+L+ +   HG+   G
Sbjct: 417 LDDTVGVFAAIRDKS-LVSWSTLIAAYAQHGHSRTG 451



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 75/258 (29%), Positives = 143/258 (55%), Gaps = 2/258 (0%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I+ + K G L SA+K+FD +  RD++ +N +ISG  K     QAL L+  M  +  K
Sbjct: 202 NALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPK 261

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV-RALD 166
            +  TF  +L+ C+N     +G  IH +V   G+  +L IG+ L+++Y +   S+  A  
Sbjct: 262 PNVVTFIGLLTACTNLEDLEQGRAIHRKVKEHGYESDLVIGNVLLNMYTKCSSSLEEARQ 321

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F+ L  R++ TWN+++ A+ +  +  + L ++ +M+ E V PN ++   ++  C++   
Sbjct: 322 VFERLRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGA 381

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
             +GK +H+ +I  G    ++ + N+L++ Y+ CGSL +    F  I    ++SW+++++
Sbjct: 382 KRQGKAVHA-LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIA 440

Query: 287 IYADYDLIFDALELFFRM 304
            YA +      LE F+ +
Sbjct: 441 AYAQHGHSRTGLEHFWEL 458



 Score = 43.9 bits (102), Expect = 0.31,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N  +N+Y+   ++DD V          +F  +  + +V+++ LI+   +  H +  L  +
Sbjct: 405 NSLMNMYNRCGSLDDTVG---------VFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHF 455

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMR 157
            E++  G+     T  S LS CS+ G   EG+Q    ++   G   +      +VDL  R
Sbjct: 456 WELLQEGLAADDVTMVSTLSACSHGGMLKEGVQSFLSMVGDHGLAPDYRHFLCMVDLLSR 515

Query: 158 MGPSVRALDLFDELP 172
            G    A +L  ++P
Sbjct: 516 AGRLEAAENLIHDMP 530


>gi|168042957|ref|XP_001773953.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162674797|gb|EDQ61301.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 905

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 185/670 (27%), Positives = 345/670 (51%), Gaps = 14/670 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSS-----SLLLDSYCQPNPQLNIYSSNRTIDDFV 55
           M +   +P   T  ++   C S   L +     S ++ +  Q +P++     N  +  + 
Sbjct: 119 MQNAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQ----NSLLSMYG 174

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K G L  A+++F  +  RD+V+YN ++    +  + K+ L L+ +M S GI     T+ +
Sbjct: 175 KCGDLPRARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYIN 234

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +L   +      EG +IH   +  G   ++ +G+ LV + +R G    A   F  + +R+
Sbjct: 235 LLDAFTTPSMLDEGKRIHKLTVEEGLNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRD 294

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           +  +N ++ A  +     E    Y +M+++GV  N  ++  ++  CS    L+ GK +HS
Sbjct: 295 VVVYNALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHS 354

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           H+ + G    ++ + NAL+  Y+ CG L +A++ F  +P  D+ISWN+I++ YA  +   
Sbjct: 355 HISEDGHSS-DVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRG 413

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +A+ L+ +MQ    +P   +F+  L+  + +     GK IH  + + G      H+ +AL
Sbjct: 414 EAMRLYKQMQSEGVKPGRVTFLHLLSACANSSAYADGKMIHEDILRSGIKSNG-HLANAL 472

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            +MY +C  +  +  VFE    R +   NS++      G+ + A ++F  M +E +  D 
Sbjct: 473 MNMYRRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDN 532

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           +T ++ L       +  LG  + +H    +SG + ++ +  +L++ Y RCG ++ +  VF
Sbjct: 533 ITFASVLSGCKNPEALELG--KQIHGRITESGLQLDVNLGNALINMYIRCGSLQDARNVF 590

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL-IPDKVTFLCVLAGCNHSGMV 534
             +   +V+ +T+++ G +  G   +A+++   M   G   PD  TF  +L+ CNH+G+V
Sbjct: 591 HSLQHRDVMSWTAMIGGCADQGEDMKAIELFWQMQNEGFRPPDGSTFTSILSACNHAGLV 650

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            EG  +F+SM+S YG+    +HY C++ +LGRA    +AE L+ Q P   D  +W +LL 
Sbjct: 651 LEGYQIFSSMESEYGVLPTIEHYGCLVGLLGRARRFQEAETLINQMPFPPDAAVWETLLG 710

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +CR+HGN  +    AN  ++L   + AVY  +SN Y+  G ++   +IR     R + ++
Sbjct: 711 ACRIHGNIALAEHAANNALKLNARNPAVYILLSNVYAAAGRWDDVAKIRRVMEGRGIRKE 770

Query: 655 IGHSLIEVNS 664
            G S IEV++
Sbjct: 771 PGRSWIEVDN 780



 Score =  236 bits (601), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 145/561 (25%), Positives = 292/561 (52%), Gaps = 6/561 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I+ SN  I+ +VK   +  A ++F EMP RD++++N LIS   +    K+A  L++EM 
Sbjct: 61  DIFLSNLLINMYVKCRSVLDAHQVFKEMPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQ 120

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G   +  T+ S+L+ C +      G +IH +++  G+  +  + + L+ +Y + G   
Sbjct: 121 NAGFIPNKITYISILTACYSPAELENGKKIHSQIIKAGYQRDPRVQNSLLSMYGKCGDLP 180

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
           RA  +F  +  R++ ++N ML  + + +   E L ++ +M +EG+ P+ +++  ++   +
Sbjct: 181 RARQVFAGISPRDVVSYNTMLGLYAQKAYVKECLGLFGQMSSEGISPDKVTYINLLDAFT 240

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              +LDEGK++H   ++ G ++ +I V  ALV     CG +  AK++F  I   DV+ +N
Sbjct: 241 TPSMLDEGKRIHKLTVEEG-LNSDIRVGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYN 299

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++  A +    +A E ++RM+      +  +++  LN  S +  +  GK IH ++++ 
Sbjct: 300 ALIAALAQHGHNVEAFEQYYRMRSDGVALNRTTYLSILNACSTSKALEAGKLIHSHISED 359

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     V + +AL  MY +C  +  +  +F + P R L   N+++       +  +A+ +
Sbjct: 360 GHS-SDVQIGNALISMYARCGDLPKARELFYTMPKRDLISWNAIIAGYARREDRGEAMRL 418

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           +  M  EG+    VT    L A + S++   G  +++H   ++SG +SN  ++ +LM+ Y
Sbjct: 419 YKQMQSEGVKPGRVTFLHLLSACANSSAYADG--KMIHEDILRSGIKSNGHLANALMNMY 476

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            RCG +  +  VFE   + +V+ + S++ G++++G    A  + + M    L PD +TF 
Sbjct: 477 RRCGSLMEAQNVFEGTQARDVISWNSMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFA 536

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+GC +   ++ G+ +   +    G+  D    + +I+M  R G L  A  +      
Sbjct: 537 SVLSGCKNPEALELGKQIHGRITES-GLQLDVNLGNALINMYIRCGSLQDARNVFHSLQ- 594

Query: 583 GGDCMMWSSLLRSCRVHGNEI 603
             D M W++++  C   G ++
Sbjct: 595 HRDVMSWTAMIGGCADQGEDM 615



 Score =  216 bits (551), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 136/558 (24%), Positives = 290/558 (51%), Gaps = 15/558 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +T+ ++L  C+      E  +IH +++  G G ++++ + L+++Y++    + A  +F E
Sbjct: 28  ATYVALLQNCTRKRLLPEAKRIHAQMVEAGVGPDIFLSNLLINMYVKCRSVLDAHQVFKE 87

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P R++ +WN ++  + +     +  +++ +M+  G  PN +++  ++  C     L+ G
Sbjct: 88  MPRRDVISWNSLISCYAQQGFKKKAFQLFEEMQNAGFIPNKITYISILTACYSPAELENG 147

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++HS +IK G+   +  V N+L+  Y  CG L  A++ F  I   DV+S+N+++ +YA 
Sbjct: 148 KKIHSQIIKAGY-QRDPRVQNSLLSMYGKCGDLPRARQVFAGISPRDVVSYNTMLGLYAQ 206

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
              + + L LF +M      P   +++  L+  +    +  GK+IH    + G +   + 
Sbjct: 207 KAYVKECLGLFGQMSSEGISPDKVTYINLLDAFTTPSMLDEGKRIHKLTVEEGLN-SDIR 265

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL  M  +C  ++S+   F+    R +   N+L+ +L   G+  +A E +  M  +G
Sbjct: 266 VGTALVTMCVRCGDVDSAKQAFKGIADRDVVVYNALIAALAQHGHNVEAFEQYYRMRSDG 325

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           + L+  T  + L A S S +   G  +L+H    + G  S++ +  +L+  Y+RCG +  
Sbjct: 326 VALNRTTYLSILNACSTSKALEAG--KLIHSHISEDGHSSDVQIGNALISMYARCGDLPK 383

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + ++F  +P  +++ + +I+ GY+R     EA+ + + M   G+ P +VTFL +L+ C +
Sbjct: 384 ARELFYTMPKRDLISWNAIIAGYARREDRGEAMRLYKQMQSEGVKPGRVTFLHLLSACAN 443

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           S    +G+++   +    GI ++    + +++M  R G L +A+ + + T    D + W+
Sbjct: 444 SSAYADGKMIHEDILRS-GIKSNGHLANALMNMYRRCGSLMEAQNVFEGTQ-ARDVISWN 501

Query: 591 SLLRSCRVHGNEIIGRRVANILM--ELEPVDFAVYSQVSNFYS----EIGEFEVSMQIRE 644
           S++     HG+     ++   +   ELEP +    S +S   +    E+G+ ++  +I E
Sbjct: 502 SMIAGHAQHGSYETAYKLFQEMQNEELEPDNITFASVLSGCKNPEALELGK-QIHGRITE 560

Query: 645 TALARKLTRDIGHSLIEV 662
           + L  +L  ++G++LI +
Sbjct: 561 SGL--QLDVNLGNALINM 576


>gi|218187045|gb|EEC69472.1| hypothetical protein OsI_38669 [Oryza sativa Indica Group]
          Length = 1084

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 189/623 (30%), Positives = 319/623 (51%), Gaps = 34/623 (5%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +  N  I  +++ G    A+++F +MP RD VT+N LISG  +  H + AL +++EM S 
Sbjct: 179 FVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSS 238

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G+     T SS+L+ C++ G   +G Q+H  +   G   +  +   L+DLY++ G    A
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYIMEGSLLDLYVKCGDVETA 298

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           L +F+     N+  WNL+L AF +++   +   ++ +M+  G+ PN  ++  ++R C+  
Sbjct: 299 LVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCT 358

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             +D G+Q+HS  +K G+ + +++V+  L+D YS  G L +A++  + +   DV+SW S+
Sbjct: 359 GEIDLGEQIHSLSVKTGF-ESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSM 417

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y  ++   DAL  F  MQ C   P        ++  +    +  G QIH  V   G+
Sbjct: 418 IAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYVSGY 477

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
             G V + +AL ++Y +C  I  + + FE    +     N L++    SG  ++A+++F 
Sbjct: 478 S-GDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFM 536

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDA 461
            M   G+  +  T  + L     SASANL      + +H   IK+G      V  +L+  
Sbjct: 537 RMDQSGVKHNVFTFVSAL-----SASANLAEIKQGKQIHARVIKTGHSFETEVGNALISL 591

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +CG  E +   F ++   N V + +I+   S++G G EALD  +              
Sbjct: 592 YGKCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFD-------------- 637

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
                      M KEG   F SM   YGI     HY+C+ID+ GRAG LD+A++ +++ P
Sbjct: 638 ----------QMKKEGLSYFKSMSDKYGIRPRPDHYACVIDIFGRAGQLDRAKKFVEEMP 687

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D M+W +LL +C+VH N  +G   A  L+ELEP D A Y  +SN Y+  G++    Q
Sbjct: 688 IAADAMVWRTLLSACKVHKNIEVGELAAKHLLELEPHDSASYVLLSNAYAVTGKWANRDQ 747

Query: 642 IRETALARKLTRDIGHSLIEVNS 664
           +R+    R + ++ G S IEV +
Sbjct: 748 VRKMMRDRGVRKEPGRSWIEVKN 770



 Score =  224 bits (571), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 141/556 (25%), Positives = 283/556 (50%), Gaps = 12/556 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K+G +  A+++F+E+ ARD V++  ++SG  +    ++AL+LY +M   G+ 
Sbjct: 81  NLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYAQNGLGEEALWLYRQMHRAGVV 140

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +    SSVLS C+ A  + +G  +H +    GF    ++G+ L+ LY+R G    A  +
Sbjct: 141 PTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCSETFVGNALITLYLRCGSFRLAERV 200

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++P R+  T+N ++    + +  +  L ++ +M++ G+ P+ ++   ++  C+    L
Sbjct: 201 FYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSSGLSPDCVTISSLLAACASLGDL 260

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +G QLHS++ K G +  +  +  +L+D Y  CG +  A   F+     +V+ WN I+  
Sbjct: 261 QKGTQLHSYLFKAG-MSSDYIMEGSLLDLYVKCGDVETALVIFNLGNRTNVVLWNLILVA 319

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +   + +  + ELF +MQ    RP+  ++   L   + TG +  G+QIH    K GF+  
Sbjct: 320 FGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTCTGEIDLGEQIHSLSVKTGFE-S 378

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++V   L DMY K   +E +  V E    + +    S++   +     KDA+  F  M 
Sbjct: 379 DMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWTSMIAGYVQHEYCKDALAAFKEMQ 438

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSR 464
             GI  D + L++     ++S  A + + R    +H     SG+  ++++  +L++ Y+R
Sbjct: 439 KCGIWPDNIGLAS-----AISGCAGIKAMRQGLQIHARVYVSGYSGDVSIWNALVNLYAR 493

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I  +   FE+I   + + +  +++G++++G+  EAL +   M Q G+  +  TF+  
Sbjct: 494 CGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKVFMRMDQSGVKHNVFTFVSA 553

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+   +   +K+G+ +   +    G   + +  + +I + G+ G  + A+    +     
Sbjct: 554 LSASANLAEIKQGKQIHARVIKT-GHSFETEVGNALISLYGKCGSFEDAKMEFSEMSERN 612

Query: 585 DCMMWSSLLRSCRVHG 600
           + + W++++ SC  HG
Sbjct: 613 E-VSWNTIITSCSQHG 627



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 256/526 (48%), Gaps = 9/526 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLY-DEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           M  R   +    ++G      P + L L+ D+   HG       F+  L  C   G   +
Sbjct: 1   MTRRGAASLGWSLAGFLAQEDPAKVLSLFADKARQHG-GLGPLDFACALRACRGNGRRWQ 59

Query: 129 GI-QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            + +IH + ++ G G +  +G+ L+DLY + G  + A  +F+EL  R+  +W  ML  + 
Sbjct: 60  VVPEIHAKAITRGLGKDRIVGNLLIDLYSKNGLVLPARRVFEELSARDNVSWVAMLSGYA 119

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +    +E L +Y +M   GV P       ++  C+   L  +G+ +H+   K G+     
Sbjct: 120 QNGLGEEALWLYRQMHRAGVVPTPYVLSSVLSSCTKAELFAQGRSVHAQGYKQGFCS-ET 178

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV NAL+  Y  CGS   A++ F  +P  D +++N+++S +A       ALE+F  MQ  
Sbjct: 179 FVGNALITLYLRCGSFRLAERVFYDMPHRDTVTFNTLISGHAQCAHGEHALEIFEEMQSS 238

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   +    L   +  G++  G Q+H Y+ K G     + ++ +L D+Y KC  +E+
Sbjct: 239 GLSPDCVTISSLLAACASLGDLQKGTQLHSYLFKAGMSSDYI-MEGSLLDLYVKCGDVET 297

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           ++ +F      ++   N ++ +     ++  + E+F  M   GI  ++ T    L+  + 
Sbjct: 298 ALVIFNLGNRTNVVLWNLILVAFGQINDLAKSFELFCQMQTAGIRPNQFTYPCILRTCTC 357

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           +   +LG    +H  ++K+GFES++ VS  L+D YS+ G +E + +V E +   +VV +T
Sbjct: 358 TGEIDLGE--QIHSLSVKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSWT 415

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           S++ GY ++   ++AL   + M + G+ PD +     ++GC     +++G L  ++   V
Sbjct: 416 SMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQG-LQIHARVYV 474

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            G   D   ++ ++++  R G + +A    ++     D + W+ L+
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIE-HKDEITWNGLV 519



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 82/287 (28%), Positives = 147/287 (51%), Gaps = 2/287 (0%)

Query: 19  TCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY 78
           TCT  + L   +   S  +   + ++Y S   ID + K G L  A+++ + +  +D+V++
Sbjct: 356 TCTGEIDLGEQIHSLS-VKTGFESDMYVSGVLIDMYSKYGWLEKARRVLEMLKEKDVVSW 414

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
             +I+G  +  + K AL  + EM   GI       +S +S C+      +G+QIH RV  
Sbjct: 415 TSMIAGYVQHEYCKDALAAFKEMQKCGIWPDNIGLASAISGCAGIKAMRQGLQIHARVYV 474

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
            G+  ++ I + LV+LY R G    A   F+E+  ++  TWN ++  F +    +E L++
Sbjct: 475 SGYSGDVSIWNALVNLYARCGRIREAFSSFEEIEHKDEITWNGLVSGFAQSGLHEEALKV 534

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           + +M   GV+ N  +F   +   +    + +GKQ+H+ VIK G       V NAL+  Y 
Sbjct: 535 FMRMDQSGVKHNVFTFVSALSASANLAEIKQGKQIHARVIKTG-HSFETEVGNALISLYG 593

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
            CGS  +AK  F  +   + +SWN+I++  + +    +AL+ F +M+
Sbjct: 594 KCGSFEDAKMEFSEMSERNEVSWNTIITSCSQHGRGLEALDFFDQMK 640


>gi|147771902|emb|CAN75707.1| hypothetical protein VITISV_031420 [Vitis vinifera]
          Length = 708

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 180/578 (31%), Positives = 308/578 (53%), Gaps = 20/578 (3%)

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           AL L   +    I      ++S+L  C+    +  G+QIH  V+  G   + ++G+ L+ 
Sbjct: 102 ALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLT 161

Query: 154 LYMRMG---PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LY ++G   P  R +  FD L  +++ +W  M+  +  + +P   L ++ KM A GVEPN
Sbjct: 162 LYFKLGTDFPETRKV--FDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPN 219

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +   +++ CS    L  G+  H  V+  G+ D N  +A+AL+D +    +L +A++ F
Sbjct: 220 AFTLSAVIKACSELGDLKLGRIFHGVVLGRGF-DSNYVIASALIDMHGRNCALDDARQLF 278

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ----LCRKRPSIRSFVEFLNFASRT 326
           D +   D I W SI+S     D   +AL  F+ MQ    +C   P   +F   L      
Sbjct: 279 DELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMC---PDGFTFGTVLTACGNL 335

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G +  GK++H  V   GF  G+V V+S+L DMYGKC  +  S  +F+  P ++    ++L
Sbjct: 336 GRLKQGKEVHAKVITTGF-CGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSAL 394

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +     +G+ K  +++F  M      +D     T L+  +  A+   G  + +HC  I+ 
Sbjct: 395 LGGYCQNGDFKSVIQIFRKMEK----VDLYCFGTILRTCAGLAAVRQG--KEVHCQYIRK 448

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G   ++ V  +L+D Y++CG IE +  +F+++P  N++ + S++ G+++NG G EAL + 
Sbjct: 449 GGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIF 508

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M++ G+ PD ++F+ +L  C+H G+V EG+  F SM   YGI    +HYSCM+D+LGR
Sbjct: 509 NQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGR 568

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           AG+L++AE L++ +    D  +W++LL +C    N  I  R+A  +MELEP     Y  +
Sbjct: 569 AGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLL 628

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +N Y  +G +  +++IR     R + +  G S IE  +
Sbjct: 629 ANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKN 666



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 144/545 (26%), Positives = 265/545 (48%), Gaps = 47/545 (8%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSG-HLNSAKKLFDEMP 71
            +L  TCT ++  +  L + ++  +   + + +  N  +  + K G      +K+FD + 
Sbjct: 122 ASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLF 181

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            +D++++  +ISG  +   P  +L L+ +M+++G++ +A T S+V+  CS  G    G  
Sbjct: 182 VKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRI 241

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
            H  VL  GF  N  I S L+D++ R      A  LFDEL E +   W  ++ A      
Sbjct: 242 FHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDF 301

Query: 192 PDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            DE LR +  M+ + G+ P+G +F  ++  C     L +GK++H+ VI  G+   N+ V 
Sbjct: 302 FDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCG-NVVVE 360

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           ++LVD Y  CGS+ E+++ FD +P+ + +SW++++  Y         +++F +M+    +
Sbjct: 361 SSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----K 416

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIH-GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
             +  F   L   +    V  GK++H  Y+ K G+    V V+SAL D+Y KC  IE + 
Sbjct: 417 VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWR--DVIVESALVDLYAKCGCIEYAQ 474

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS--- 426
            +F+  P R+L   NS++     +G  ++A+ +F  MV EGI  D ++    L A S   
Sbjct: 475 TIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRG 534

Query: 427 ---------VSASAN----------------LGSCRLLHCCAI---KSGFESNIAVSCSL 458
                    +S + +                LG   LL    I    S F  + ++  +L
Sbjct: 535 LVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAAL 594

Query: 459 MDAYSRCGHIELSHQVFEKIP--SPNV-VCFTSIMNGYSRNGMGREALDMLEVMIQRGL- 514
           + A + C + E++ ++ +++    P+  + +  + N Y   G   +AL +  +M  RG+ 
Sbjct: 595 LGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVN 654

Query: 515 -IPDK 518
            +P K
Sbjct: 655 KMPGK 659



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 208/437 (47%), Gaps = 24/437 (5%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            C+       L++   +    +    + +  +++ C+  +  + G Q+H+HVIK G ++ 
Sbjct: 93  LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSG-LEF 151

Query: 246 NIFVANALVDFYSACGS-LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           + FV N+L+  Y   G+   E +K FD + V DVISW S++S Y       ++LELF++M
Sbjct: 152 DRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKM 211

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P+  +    +   S  G++  G+  HG V   GFD   V + SAL DM+G+   
Sbjct: 212 LAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYV-IASALIDMHGRNCA 270

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-DEGIGLDEVTLSTTLK 423
           ++ +  +F+        C  S++++L  +    +A+  F  M  D G+  D  T  T L 
Sbjct: 271 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVL- 329

Query: 424 ALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
               +A  NLG  +    +H   I +GF  N+ V  SL+D Y +CG +  S ++F+++P 
Sbjct: 330 ----TACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPI 385

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC---VLAGCNHSGMVKEG 537
            N V +++++ GY +NG  +  + +   M       +KV   C   +L  C     V++G
Sbjct: 386 KNSVSWSALLGGYCQNGDFKSVIQIFRKM-------EKVDLYCFGTILRTCAGLAAVRQG 438

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           + V        G   D    S ++D+  + G ++ A+ +  Q P   + + W+S++    
Sbjct: 439 KEVHCQYIRKGGW-RDVIVESALVDLYAKCGCIEYAQTIFDQMP-VRNLITWNSMIGGFA 496

Query: 598 VHGNEIIGRRVANILME 614
            +G      R+ N +++
Sbjct: 497 QNGRGEEALRIFNQMVK 513


>gi|302815813|ref|XP_002989587.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
 gi|300142765|gb|EFJ09463.1| hypothetical protein SELMODRAFT_130050 [Selaginella moellendorffii]
          Length = 736

 Score =  311 bits (797), Expect = 7e-82,   Method: Compositional matrix adjust.
 Identities = 184/616 (29%), Positives = 329/616 (53%), Gaps = 13/616 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A  +F  +   + V++ L+++   +  H ++AL  Y  MV  G++   + F
Sbjct: 2   YGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAMF 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
              + VCS++    +G  +H  +L       ++ +G+ L+ +Y R      A   FDE+ 
Sbjct: 62  VVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEMG 121

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKM---KAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           ++ L TWN ++  +         L++Y  M     EG++P+ ++F   +  C++   + +
Sbjct: 122 KKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDISQ 181

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G+++ +  +  G+   +I V NAL++ YS CGSL  A+K FD +   DVI+WN+++S YA
Sbjct: 182 GREIEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYA 240

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                  ALELF RM     +P++ +F+  L   +   ++  G+ IH  V + G++   V
Sbjct: 241 KQGAATQALELFQRMGPNDPKPNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLV 300

Query: 350 HVQSALTDMYGKCNV-IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
            + + L +MY KC+  +E +  VFE    R +   N L+ + +  G  KDA+++F  M  
Sbjct: 301 -IGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQL 359

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           E +  +E+TLS  L A +V  +   G  + +H        ++++ +  SLM+ Y+RCG +
Sbjct: 360 ENVAPNEITLSNVLSACAVLGAKRQG--KAVHALIASGRCKADVVLENSLMNMYNRCGSL 417

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           + +  VF  I   ++V +++++  Y+++G  R  L+    ++Q GL  D VT +  L+ C
Sbjct: 418 DDTVGVFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHFWELLQEGLAADDVTMVSTLSAC 477

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +H GM+KEG   F SM   +G+  D +H+ CM+D+L RAG L+ AE L+   P   D + 
Sbjct: 478 SHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSRAGRLEAAENLIHDMPFLPDAVA 537

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVD-FAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           W+SLL  C++H +     RVA+ L ELE  D  +  + +SN Y+E G ++    +R+T  
Sbjct: 538 WTSLLSGCKLHNDTKRAARVADKLFELESEDEHSTVTLLSNVYAEAGRWD---DVRKTRN 594

Query: 648 ARKLTRDIGHSLIEVN 663
            R   ++ G S IE+N
Sbjct: 595 RRAARKNPGCSYIEIN 610



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 114/456 (25%), Positives = 222/456 (48%), Gaps = 9/456 (1%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    AL +F  +   N  +W L++ AF       E L  Y +M  EG+ P+G  
Sbjct: 1   MYGKCGSVADALAVFHAIEHPNSVSWTLIVAAFARNGHYREALGYYRRMVLEGLRPDGAM 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F   +  CS    L +G+ LH+ +++   ++ +I +  AL+  Y+ C  L  A+K+FD +
Sbjct: 61  FVVAIGVCSSSKDLKQGQLLHAMILETRLLEFDIILGTALITMYARCRDLELARKTFDEM 120

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK---RPSIRSFVEFLNFASRTGNVY 330
               +++WN++++ Y+       AL+++  M        +P   +F   L   +  G++ 
Sbjct: 121 GKKTLVTWNALIAGYSRNGDHRGALKIYQDMVSKSPEGMKPDAITFSSALYACTVVGDIS 180

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G++I       G+   S+ VQ+AL +MY KC  +ES+  VF+    R +   N++++  
Sbjct: 181 QGREIEARTVASGYASDSI-VQNALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGY 239

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
              G    A+E+F  M       + VT    L A   +   +L   R +H    + G+ES
Sbjct: 240 AKQGAATQALELFQRMGPNDPKPNVVTFIGLLTA--CTNLEDLEQGRAIHRKVREDGYES 297

Query: 451 NIAVSCSLMDAYSRC-GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           ++ +   L++ Y++C   +E + QVFE++ + +V+ +  ++  Y + G  ++ALD+ + M
Sbjct: 298 DLVIGNVLLNMYTKCSSSLEEARQVFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQM 357

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
               + P+++T   VL+ C   G  ++G+ V +++ +     AD    + +++M  R G 
Sbjct: 358 QLENVAPNEITLSNVLSACAVLGAKRQGKAV-HALIASGRCKADVVLENSLMNMYNRCGS 416

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           LD    +          + WS+L+ +   HG+   G
Sbjct: 417 LDDTVGVFAAIRDKS-LVSWSTLIAAYAQHGHSRTG 451



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 74/258 (28%), Positives = 143/258 (55%), Gaps = 2/258 (0%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I+ + K G L SA+K+FD +  RD++ +N +ISG  K     QAL L+  M  +  K
Sbjct: 202 NALINMYSKCGSLESARKVFDRLKNRDVIAWNTMISGYAKQGAATQALELFQRMGPNDPK 261

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV-RALD 166
            +  TF  +L+ C+N     +G  IH +V   G+  +L IG+ L+++Y +   S+  A  
Sbjct: 262 PNVVTFIGLLTACTNLEDLEQGRAIHRKVREDGYESDLVIGNVLLNMYTKCSSSLEEARQ 321

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F+ +  R++ TWN+++ A+ +  +  + L ++ +M+ E V PN ++   ++  C++   
Sbjct: 322 VFERMRTRDVITWNILIVAYVQYGQAKDALDIFKQMQLENVAPNEITLSNVLSACAVLGA 381

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
             +GK +H+ +I  G    ++ + N+L++ Y+ CGSL +    F  I    ++SW+++++
Sbjct: 382 KRQGKAVHA-LIASGRCKADVVLENSLMNMYNRCGSLDDTVGVFAAIRDKSLVSWSTLIA 440

Query: 287 IYADYDLIFDALELFFRM 304
            YA +      LE F+ +
Sbjct: 441 AYAQHGHSRTGLEHFWEL 458



 Score = 44.7 bits (104), Expect = 0.18,   Method: Compositional matrix adjust.
 Identities = 33/135 (24%), Positives = 61/135 (45%), Gaps = 10/135 (7%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N  +N+Y+   ++DD V          +F  +  + +V+++ LI+   +  H +  L  +
Sbjct: 405 NSLMNMYNRCGSLDDTVG---------VFAAIRDKSLVSWSTLIAAYAQHGHSRTGLEHF 455

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMR 157
            E++  G+     T  S LS CS+ G   EG+Q    ++   G   +      +VDL  R
Sbjct: 456 WELLQEGLAADDVTMVSTLSACSHGGMLKEGVQTFLSMVGDHGLAPDYRHFLCMVDLLSR 515

Query: 158 MGPSVRALDLFDELP 172
            G    A +L  ++P
Sbjct: 516 AGRLEAAENLIHDMP 530


>gi|225447243|ref|XP_002272819.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Vitis vinifera]
          Length = 633

 Score =  311 bits (796), Expect = 9e-82,   Method: Compositional matrix adjust.
 Identities = 180/578 (31%), Positives = 308/578 (53%), Gaps = 20/578 (3%)

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           AL L   +    I      ++S+L  C+    +  G+QIH  V+  G   + ++G+ L+ 
Sbjct: 43  ALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLT 102

Query: 154 LYMRMG---PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LY ++G   P  R +  FD L  +++ +W  M+  +  + +P   L ++ KM A GVEPN
Sbjct: 103 LYFKLGTDFPETRKV--FDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPN 160

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +   +++ CS    L  G+  H  V+  G+ D N  +A+AL+D +    +L +A++ F
Sbjct: 161 AFTLSAVIKACSELGDLKLGRIFHGVVLGRGF-DSNYVIASALIDMHGRNCALDDARQLF 219

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ----LCRKRPSIRSFVEFLNFASRT 326
           D +   D I W SI+S     D   +AL  F+ MQ    +C   P   +F   L      
Sbjct: 220 DELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMC---PDGFTFGTVLTACGNL 276

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G +  GK++H  V   GF  G+V V+S+L DMYGKC  +  S  +F+  P ++    ++L
Sbjct: 277 GRLKQGKEVHAKVITTGF-CGNVVVESSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSAL 335

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +     +G+ K  +++F  M      +D     T L+  +  A+   G  + +HC  I+ 
Sbjct: 336 LGGYCQNGDFKSVIQIFRKMEK----VDLYCFGTILRTCAGLAAVRQG--KEVHCQYIRK 389

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G   ++ V  +L+D Y++CG IE +  +F+++P  N++ + S++ G+++NG G EAL + 
Sbjct: 390 GGWRDVIVESALVDLYAKCGCIEYAQTIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIF 449

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M++ G+ PD ++F+ +L  C+H G+V EG+  F SM   YGI    +HYSCM+D+LGR
Sbjct: 450 NQMVKEGIKPDYISFIGILFACSHRGLVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGR 509

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           AG+L++AE L++ +    D  +W++LL +C    N  I  R+A  +MELEP     Y  +
Sbjct: 510 AGLLEEAEILIETSDFRDDSSLWAALLGACTTCTNYEIAERIAKRVMELEPDYHLSYVLL 569

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +N Y  +G +  +++IR     R + +  G S IE  +
Sbjct: 570 ANVYKAVGRWNDALRIRRLMKDRGVNKMPGKSWIETKN 607



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 144/545 (26%), Positives = 265/545 (48%), Gaps = 47/545 (8%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSG-HLNSAKKLFDEMP 71
            +L  TCT ++  +  L + ++  +   + + +  N  +  + K G      +K+FD + 
Sbjct: 63  ASLLQTCTKVLAFNHGLQIHAHVIKSGLEFDRFVGNSLLTLYFKLGTDFPETRKVFDGLF 122

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            +D++++  +ISG  +   P  +L L+ +M+++G++ +A T S+V+  CS  G    G  
Sbjct: 123 VKDVISWTSMISGYVRVGKPMNSLELFWKMLAYGVEPNAFTLSAVIKACSELGDLKLGRI 182

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
            H  VL  GF  N  I S L+D++ R      A  LFDEL E +   W  ++ A      
Sbjct: 183 FHGVVLGRGFDSNYVIASALIDMHGRNCALDDARQLFDELLEPDAICWTSIISALTRNDF 242

Query: 192 PDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            DE LR +  M+ + G+ P+G +F  ++  C     L +GK++H+ VI  G+   N+ V 
Sbjct: 243 FDEALRFFYSMQRDHGMCPDGFTFGTVLTACGNLGRLKQGKEVHAKVITTGFCG-NVVVE 301

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           ++LVD Y  CGS+ E+++ FD +P+ + +SW++++  Y         +++F +M+    +
Sbjct: 302 SSLVDMYGKCGSVGESQRIFDRMPIKNSVSWSALLGGYCQNGDFKSVIQIFRKME----K 357

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIH-GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
             +  F   L   +    V  GK++H  Y+ K G+    V V+SAL D+Y KC  IE + 
Sbjct: 358 VDLYCFGTILRTCAGLAAVRQGKEVHCQYIRKGGWR--DVIVESALVDLYAKCGCIEYAQ 415

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS--- 426
            +F+  P R+L   NS++     +G  ++A+ +F  MV EGI  D ++    L A S   
Sbjct: 416 TIFDQMPVRNLITWNSMIGGFAQNGRGEEALRIFNQMVKEGIKPDYISFIGILFACSHRG 475

Query: 427 ---------VSASAN----------------LGSCRLLHCCAI---KSGFESNIAVSCSL 458
                    +S + +                LG   LL    I    S F  + ++  +L
Sbjct: 476 LVDEGREYFISMTKDYGIKVGIEHYSCMVDLLGRAGLLEEAEILIETSDFRDDSSLWAAL 535

Query: 459 MDAYSRCGHIELSHQVFEKIP--SPNV-VCFTSIMNGYSRNGMGREALDMLEVMIQRGL- 514
           + A + C + E++ ++ +++    P+  + +  + N Y   G   +AL +  +M  RG+ 
Sbjct: 536 LGACTTCTNYEIAERIAKRVMELEPDYHLSYVLLANVYKAVGRWNDALRIRRLMKDRGVN 595

Query: 515 -IPDK 518
            +P K
Sbjct: 596 KMPGK 600



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 208/437 (47%), Gaps = 24/437 (5%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            C+       L++   +    +    + +  +++ C+  +  + G Q+H+HVIK G ++ 
Sbjct: 34  LCKSGELSGALQLLKSIDPGEISAKPVLYASLLQTCTKVLAFNHGLQIHAHVIKSG-LEF 92

Query: 246 NIFVANALVDFYSACGS-LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           + FV N+L+  Y   G+   E +K FD + V DVISW S++S Y       ++LELF++M
Sbjct: 93  DRFVGNSLLTLYFKLGTDFPETRKVFDGLFVKDVISWTSMISGYVRVGKPMNSLELFWKM 152

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P+  +    +   S  G++  G+  HG V   GFD   V + SAL DM+G+   
Sbjct: 153 LAYGVEPNAFTLSAVIKACSELGDLKLGRIFHGVVLGRGFDSNYV-IASALIDMHGRNCA 211

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-DEGIGLDEVTLSTTLK 423
           ++ +  +F+        C  S++++L  +    +A+  F  M  D G+  D  T  T L 
Sbjct: 212 LDDARQLFDELLEPDAICWTSIISALTRNDFFDEALRFFYSMQRDHGMCPDGFTFGTVL- 270

Query: 424 ALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
               +A  NLG  +    +H   I +GF  N+ V  SL+D Y +CG +  S ++F+++P 
Sbjct: 271 ----TACGNLGRLKQGKEVHAKVITTGFCGNVVVESSLVDMYGKCGSVGESQRIFDRMPI 326

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC---VLAGCNHSGMVKEG 537
            N V +++++ GY +NG  +  + +   M       +KV   C   +L  C     V++G
Sbjct: 327 KNSVSWSALLGGYCQNGDFKSVIQIFRKM-------EKVDLYCFGTILRTCAGLAAVRQG 379

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           + V        G   D    S ++D+  + G ++ A+ +  Q P   + + W+S++    
Sbjct: 380 KEVHCQYIRKGGW-RDVIVESALVDLYAKCGCIEYAQTIFDQMP-VRNLITWNSMIGGFA 437

Query: 598 VHGNEIIGRRVANILME 614
            +G      R+ N +++
Sbjct: 438 QNGRGEEALRIFNQMVK 454


>gi|357149883|ref|XP_003575265.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 877

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 334/623 (53%), Gaps = 7/623 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +I+ +N  +  +   G ++ A+ +FDE    R+ V++N L+S   K      A+ ++ EM
Sbjct: 134 DIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSAYVKNDRCSHAVKVFGEM 193

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  G++ +   FS V++ C+ +     G ++H  V+  G+  +++  + LVD+Y ++G  
Sbjct: 194 VWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGYDKDVFTANALVDMYSKLGDI 253

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDE-VLRMYNKMKAEGVEPNGLSFCYMVRG 220
             A  +F ++PE ++ +WN  +   C L   D+  L +  +MK+ G+ PN  +   +++ 
Sbjct: 254 RMAAVVFGKVPETDVVSWNAFISG-CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA 312

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+     + G+Q+H  ++K    D + ++A  LVD Y+  G L +AKK FD+IP  D++ 
Sbjct: 313 CAGSGAFNLGRQIHGFMVKAN-ADSDNYIAFGLVDMYAKHGLLDDAKKVFDWIPQRDLVL 371

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+++S  +      +AL LF RM+      +  +    L   +    +   +Q+H    
Sbjct: 372 WNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKSTASLEAISDTRQVHALAE 431

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLGF   S HV + L D Y KC+ +  +  VFE      +    S++T+L    + +DA+
Sbjct: 432 KLGFLSDS-HVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAFTSMITALSQCDHGEDAI 490

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  M+ +G+  D   LS+ L A +  ++   G  + +H   IK  F S++    +L+ 
Sbjct: 491 KLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQG--KQVHAHLIKRQFMSDVFAGNALVY 548

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG IE +   F  +P   VV +++++ G +++G G+ ALD+   M+   + P+ +T
Sbjct: 549 TYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALDVFHRMVDEHISPNHIT 608

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
              VL  CNH+G+V E +  FNSMK ++GI+   +HY+CMID+LGRAG LD A EL+   
Sbjct: 609 MTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHYACMIDLLGRAGKLDDAMELVNSM 668

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   +  +W +LL + RVH +  +GR  A  L  LEP     +  ++N Y+  G ++   
Sbjct: 669 PFQTNAAVWGALLAASRVHRDPELGRLAAEKLFILEPEKSGTHVLLANTYASAGMWDDVA 728

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
           ++R+     K+ ++   S +E+ 
Sbjct: 729 KVRKLMKDSKVKKEPAMSWVELK 751



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 165/616 (26%), Positives = 300/616 (48%), Gaps = 29/616 (4%)

Query: 10  VRTITTLAPTCTSIVPLSSSLLLDSYCQPN---PQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           +R++ T+ P  T     + SLL  ++   +     L     N  +  + K     SA+++
Sbjct: 1   MRSLETIGPLLTRYAA-TQSLLQGAHIHAHLLKSGLFAVFRNHLLSFYSKCRLPGSARRV 59

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FDE+P    V+++ L++       P+ AL  +  M S  ++ +      VL    +AGF 
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNAMPRDALGAFRSMRSCSVRCNEFVLPVVLKCAPDAGF- 118

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
             G Q+H   ++ G G ++++ + LV +Y   G    A  +FDE   ERN  +WN ++ A
Sbjct: 119 --GTQLHALAMATGLGGDIFVANALVAMYGGFGFVDEARMVFDEAGCERNTVSWNGLMSA 176

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           + +  R    ++++ +M   GV+PN   F  +V  C+    L+ G+++H+ VI+ G+ D 
Sbjct: 177 YVKNDRCSHAVKVFGEMVWGGVQPNEFGFSCVVNACTGSRDLEAGRKVHAMVIRTGY-DK 235

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           ++F ANALVD YS  G +  A   F  +P  DV+SWN+ +S    +     ALEL  +M+
Sbjct: 236 DVFTANALVDMYSKLGDIRMAAVVFGKVPETDVVSWNAFISGCVLHGHDQHALELLLQMK 295

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                P++ +    L   + +G    G+QIHG++ K   D  + ++   L DMY K  ++
Sbjct: 296 SSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDN-YIAFGLVDMYAKHGLL 354

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           + +  VF+  P R L   N+L++   H     +A+ +F  M  EG  ++  TL+  LK  
Sbjct: 355 DDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLK-- 412

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           S ++   +   R +H  A K GF S+  V   L+D+Y +C  +  +++VFEK  S +++ 
Sbjct: 413 STASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIA 472

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-- 543
           FTS++   S+   G +A+ +   M+++GL PD      +L  C      ++G+ V     
Sbjct: 473 FTSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLI 532

Query: 544 ----MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
               M  V+  +A       ++    + G ++ A+      P  G  + WS+++     H
Sbjct: 533 KRQFMSDVFAGNA-------LVYTYAKCGSIEDADLAFSGLPEKG-VVSWSAMIGGLAQH 584

Query: 600 GNEIIGRRVANILMEL 615
           G+   G+R  ++   +
Sbjct: 585 GH---GKRALDVFHRM 597



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 91/378 (24%), Positives = 188/378 (49%), Gaps = 4/378 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           M S+ L+P V T++++   C      +    +  +  + N   + Y +   +D + K G 
Sbjct: 294 MKSSGLVPNVFTLSSILKACAGSGAFNLGRQIHGFMVKANADSDNYIAFGLVDMYAKHGL 353

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ AKK+FD +P RD+V +N LISGC       +AL L+  M   G   + +T ++VL  
Sbjct: 354 LDDAKKVFDWIPQRDLVLWNALISGCSHGAQHAEALSLFCRMRKEGFDVNRTTLAAVLKS 413

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            ++    ++  Q+H     LGF  + ++ + L+D Y +      A  +F++    ++  +
Sbjct: 414 TASLEAISDTRQVHALAEKLGFLSDSHVVNGLIDSYWKCDCLNYAYRVFEKHGSYDIIAF 473

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+ A  +    ++ ++++ +M  +G++P+      ++  C+     ++GKQ+H+H+IK
Sbjct: 474 TSMITALSQCDHGEDAIKLFMEMLRKGLDPDPFVLSSLLNACASLSAYEQGKQVHAHLIK 533

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
             ++  ++F  NALV  Y+ CGS+ +A  +F  +P   V+SW++++   A +     AL+
Sbjct: 534 RQFMS-DVFAGNALVYTYAKCGSIEDADLAFSGLPEKGVVSWSAMIGGLAQHGHGKRALD 592

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-GFDHGSVHVQSALTDM 358
           +F RM      P+  +    L   +  G V   K+    + ++ G +    H  + + D+
Sbjct: 593 VFHRMVDEHISPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIERTEEHY-ACMIDL 651

Query: 359 YGKCNVIESSVAVFESAP 376
            G+   ++ ++ +  S P
Sbjct: 652 LGRAGKLDDAMELVNSMP 669


>gi|3297823|emb|CAA19881.1| putative protein [Arabidopsis thaliana]
 gi|7270348|emb|CAB80116.1| putative protein [Arabidopsis thaliana]
          Length = 844

 Score =  310 bits (793), Expect = 2e-81,   Method: Compositional matrix adjust.
 Identities = 181/600 (30%), Positives = 316/600 (52%), Gaps = 27/600 (4%)

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE-MVSHGIKESASTFSSVLSVCSNAGF 125
           FD +  RD+  +NL+ISG G+  +  + +  +   M+S G+     TF SVL  C     
Sbjct: 42  FDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLFMLSSGLTPDYRTFPSVLKACRTV-- 99

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
             +G +IHC  L  GF  ++Y+ + L+ LY R      A  LFDE+P R++ +WN M+  
Sbjct: 100 -IDGNKIHCLALKFGFMWDVYVAASLIHLYSRYKAVGNARILFDEMPVRDMGSWNAMISG 158

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           +C+     E L + N ++A     + ++   ++  C+     + G  +HS+ IK G    
Sbjct: 159 YCQSGNAKEALTLSNGLRAM----DSVTVVSLLSACTEAGDFNRGVTIHSYSIKHG---- 210

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
              + + L         L + +K FD + V D+ISWNSI+  Y   +    A+ LF  M+
Sbjct: 211 ---LESEL---------LRDCQKVFDRMYVRDLISWNSIIKAYELNEQPLRAISLFQEMR 258

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
           L R +P   + +   +  S+ G++   + + G+  + G+    + + +A+  MY K  ++
Sbjct: 259 LSRIQPDCLTLISLASILSQLGDIRACRSVQGFTLRKGWFLEDITIGNAVVVMYAKLGLV 318

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKA 424
           +S+ AVF   P   +   N++++    +G   +A+EM+  M +EG I  ++ T  + L A
Sbjct: 319 DSARAVFNWLPNTDVISWNTIISGYAQNGFASEAIEMYNIMEEEGEIAANQGTWVSVLPA 378

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            S + +   G    LH   +K+G   ++ V  SL D Y +CG +E +  +F +IP  N V
Sbjct: 379 CSQAGALRQG--MKLHGRLLKNGLYLDVFVVTSLADMYGKCGRLEDALSLFYQIPRVNSV 436

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + +++  +  +G G +A+ + + M+  G+ PD +TF+ +L+ C+HSG+V EGQ  F  M
Sbjct: 437 PWNTLIACHGFHGHGEKAVMLFKEMLDEGVKPDHITFVTLLSACSHSGLVDEGQWCFEMM 496

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           ++ YGI    +HY CM+DM GRAG L+ A + ++      D  +W +LL +CRVHGN  +
Sbjct: 497 QTDYGITPSLKHYGCMVDMYGRAGQLETALKFIKSMSLQPDASIWGALLSACRVHGNVDL 556

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           G+  +  L E+EP     +  +SN Y+  G++E   +IR  A  + L +  G S +EV++
Sbjct: 557 GKIASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTPGWSSMEVDN 616



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 152/611 (24%), Positives = 277/611 (45%), Gaps = 94/611 (15%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIV--------PLSSSLLLDSYCQPNPQLNIYSSNRTID 52
           MLS+ L P  RT  ++   C +++         L    + D Y   +  +++YS  + + 
Sbjct: 77  MLSSGLTPDYRTFPSVLKACRTVIDGNKIHCLALKFGFMWDVYVAAS-LIHLYSRYKAV- 134

Query: 53  DFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS- 111
                    +A+ LFDEMP RDM ++N +ISG  +  + K+AL L     S+G++   S 
Sbjct: 135 --------GNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTL-----SNGLRAMDSV 181

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T  S+LS C+ AG +  G+ IH   +  G    L     L D             +FD +
Sbjct: 182 TVVSLLSACTEAGDFNRGVTIHSYSIKHGLESEL-----LRD----------CQKVFDRM 226

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             R+L +WN +++A+    +P   + ++ +M+   ++P+ L+   +    S    +   +
Sbjct: 227 YVRDLISWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASILSQLGDIRACR 286

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +    ++ GW   +I + NA+V  Y+  G +  A+  F+++P  DVISWN+I+S YA  
Sbjct: 287 SVQGFTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQN 346

Query: 292 DLIFDALELFFRMQLCRKRPSIR-SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
               +A+E++  M+   +  + + ++V  L   S+ G +  G ++HG + K G  +  V 
Sbjct: 347 GFASEAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLKNGL-YLDVF 405

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V ++L DMYGKC  +E ++++F   P  +    N+L+      G+ + AV +F  M+DEG
Sbjct: 406 VVTSLADMYGKCGRLEDALSLFYQIPRVNSVPWNTLIACHGFHGHGEKAVMLFKEMLDEG 465

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D +T  T L A S S   + G            G   ++     ++D Y R G +E 
Sbjct: 466 VKPDHITFVTLLSACSHSGLVDEGQW-CFEMMQTDYGITPSLKHYGCMVDMYGRAGQLE- 523

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
                                          AL  ++ M    L PD   +  +L+ C  
Sbjct: 524 ------------------------------TALKFIKSM---SLQPDASIWGALLSACRV 550

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMI-DMLGRAGILDKAEEL--------LQQTP 581
            G V  G++   + + ++ ++ +   Y  ++ +M   AG  +  +E+        L++TP
Sbjct: 551 HGNVDLGKI---ASEHLFEVEPEHVGYHVLLSNMYASAGKWEGVDEIRSIAHGKGLRKTP 607

Query: 582 GGGDCMMWSSL 592
           G      WSS+
Sbjct: 608 G------WSSM 612



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 112/462 (24%), Positives = 225/462 (48%), Gaps = 31/462 (6%)

Query: 143 LNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK- 201
           + L    P V  ++ + P+   +  FD +  R++  WNLM+  +       EV+R ++  
Sbjct: 17  IALICNQPNVSTHVSLSPNKSKMHTFDHIQNRDVYAWNLMISGYGRAGNSSEVIRCFSLF 76

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M + G+ P+  +F  +++ C   +   +G ++H   +K G++  +++VA +L+  YS   
Sbjct: 77  MLSSGLTPDYRTFPSVLKACRTVI---DGNKIHCLALKFGFM-WDVYVAASLIHLYSRYK 132

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
           ++  A+  FD +PV D+ SWN+++S Y       +AL L   +   R   S+ + V  L+
Sbjct: 133 AVGNARILFDEMPVRDMGSWNAMISGYCQSGNAKEALTLSNGL---RAMDSV-TVVSLLS 188

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
             +  G+   G  IH Y  K G +          +++   C        VF+    R L 
Sbjct: 189 ACTEAGDFNRGVTIHSYSIKHGLE----------SELLRDCQ------KVFDRMYVRDLI 232

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             NS++ +   +     A+ +F  M    I  D +TL +    L  S   ++ +CR +  
Sbjct: 233 SWNSIIKAYELNEQPLRAISLFQEMRLSRIQPDCLTLISLASIL--SQLGDIRACRSVQG 290

Query: 442 CAIKSG-FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             ++ G F  +I +  +++  Y++ G ++ +  VF  +P+ +V+ + +I++GY++NG   
Sbjct: 291 FTLRKGWFLEDITIGNAVVVMYAKLGLVDSARAVFNWLPNTDVISWNTIISGYAQNGFAS 350

Query: 501 EALDMLEVMIQRGLI-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
           EA++M  +M + G I  ++ T++ VL  C+ +G +++G  +   +    G+  D    + 
Sbjct: 351 EAIEMYNIMEEEGEIAANQGTWVSVLPACSQAGALRQGMKLHGRLLK-NGLYLDVFVVTS 409

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           + DM G+ G L+ A  L  Q P   + + W++L+     HG+
Sbjct: 410 LADMYGKCGRLEDALSLFYQIP-RVNSVPWNTLIACHGFHGH 450


>gi|357504267|ref|XP_003622422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497437|gb|AES78640.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 952

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 195/690 (28%), Positives = 345/690 (50%), Gaps = 46/690 (6%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T++++ P C+ +  L S   +  +   +  + +++ S+  ++ + K   +  A+ +FD M
Sbjct: 143 TVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREAQTVFDLM 202

Query: 71  PARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
           P RD+VT+N L S    CG    P++ L ++ EMV  G+K    T S +LS CS+     
Sbjct: 203 PHRDVVTWNSLSSCYVNCG---FPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLK 259

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            G  IH   L  G   N+++ + LV+LY        A  +FD +P RN+ TWN +   + 
Sbjct: 260 SGKAIHGFALKHGMVENVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCYV 319

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
               P + L ++ +M   GV+P+ ++   ++  CS    L  GK +H   +K G V+ ++
Sbjct: 320 NCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVE-DV 378

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV  ALV+ Y+ C  + EA+  FD +P  +V++WNS+ S Y +       L +F  M L 
Sbjct: 379 FVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMVLN 438

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             +P + + +  L+  S   ++  GK IHG+  + G     V V +AL  +Y KC  +  
Sbjct: 439 GVKPDLVTMLSILHACSDLQDLKSGKVIHGFAVRHGMVE-DVFVCNALLSLYAKCVCVRE 497

Query: 368 SVAVFESAPGRSLECCNSLMTSL-----------------------------------LH 392
           +  VF+  P R +   N ++T+                                    + 
Sbjct: 498 AQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVK 557

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           +  I++A+E+F  M   G   DE T+ + L+A S+S    +G  + +HC   +   + ++
Sbjct: 558 NSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMG--KEIHCYVFRHWKDWDL 615

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           A + +L+D Y++CG + LS  VF+ +P  +V  + +++     +G G+EAL + E M+  
Sbjct: 616 ARTNALVDMYAKCGGLSLSRNVFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLS 675

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
            + PD  TF CVL+ C+HS +V+EG  +FNSM   + ++ + +HY+C++D+  RAG L++
Sbjct: 676 MVKPDSATFTCVLSACSHSMLVEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEE 735

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A   +Q+ P     + W + L  CRV+ N  + +  A  L E++P   A Y  + N    
Sbjct: 736 AYGFIQRMPMEPTAIAWKAFLAGCRVYKNVELAKISAKKLFEIDPNGSANYVTLFNILVT 795

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEV 662
              +  + +IR+    R +T+  G S   V
Sbjct: 796 AKLWSEASKIRKLMKERGITKTPGCSWFHV 825



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 158/591 (26%), Positives = 283/591 (47%), Gaps = 45/591 (7%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSH 104
           N  I  + K   +  A+++FD++ ARD+VT+N L +    CG    P+Q L ++ +M  +
Sbjct: 79  NAFIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCG---FPQQGLNVFRKMGLN 135

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            +K +  T SS+L  CS+      G +IH  V+  G   ++++ S  V+ Y +      A
Sbjct: 136 KVKANPLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVEDVFVSSAFVNFYAKCLCVREA 195

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD +P R++ TWN +   +     P + L ++ +M  +GV+P+ ++   ++  CS  
Sbjct: 196 QTVFDLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDL 255

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L  GK +H   +K G V+ N+FV+NALV+ Y +C  + EA+  FD +P  +VI+WNS+
Sbjct: 256 QDLKSGKAIHGFALKHGMVE-NVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSL 314

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
            S Y +       L +F  M L   +P   +    L   S+  ++  GK IHG+  K G 
Sbjct: 315 ASCYVNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGM 374

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               V V +AL ++Y  C  +  +  VF+  P R++   NSL +  ++ G  +  + +F 
Sbjct: 375 VE-DVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFR 433

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            MV  G+  D VT+ + L A   S   +L S +++H  A++ G   ++ V  +L+  Y++
Sbjct: 434 EMVLNGVKPDLVTMLSILHA--CSDLQDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAK 491

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           C  +  +  VF+ IP   V  +  I+  Y  N    + L M   M +  +  D++T+  V
Sbjct: 492 CVCVREAQVVFDLIPHREVASWNGILTAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVV 551

Query: 525 LAGCNHSGMVKEGQLVFNSMK---------SVYGI------------------------- 550
           + GC  +  ++E   +F  M+         ++Y I                         
Sbjct: 552 IGGCVKNSRIEEAMEIFRKMQTMGFKPDETTIYSILRACSLSECLRMGKEIHCYVFRHWK 611

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           D D    + ++DM  + G L  +  +    P   D   W++++ +  +HGN
Sbjct: 612 DWDLARTNALVDMYAKCGGLSLSRNVFDMMP-IKDVFSWNTMIFANGMHGN 661



 Score =  194 bits (494), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 127/450 (28%), Positives = 226/450 (50%), Gaps = 4/450 (0%)

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           P +A+ +Y    + GIK     F +V   C+ +    +  Q H      G   ++ IG+ 
Sbjct: 21  PNEAIKIYTSSRARGIKPDKPVFMAVAKACAASRDALKVKQFHDDATRCGVMSDVSIGNA 80

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
            +  Y +      A  +FD+L  R++ TWN +   +     P + L ++ KM    V+ N
Sbjct: 81  FIHAYGKCKCVEGARRVFDDLVARDVVTWNSLSACYVNCGFPQQGLNVFRKMGLNKVKAN 140

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
            L+   ++ GCS    L  GK++H  V++ G V+ ++FV++A V+FY+ C  + EA+  F
Sbjct: 141 PLTVSSILPGCSDLQDLKSGKEIHGFVVRHGMVE-DVFVSSAFVNFYAKCLCVREAQTVF 199

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  DV++WNS+ S Y +       L +F  M L   +P   +    L+  S   ++ 
Sbjct: 200 DLMPHRDVVTWNSLSSCYVNCGFPQKGLNVFREMVLDGVKPDPVTVSCILSACSDLQDLK 259

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            GK IHG+  K G    +V V +AL ++Y  C  +  + AVF+  P R++   NSL +  
Sbjct: 260 SGKAIHGFALKHGMVE-NVFVSNALVNLYESCLCVREAQAVFDLMPHRNVITWNSLASCY 318

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           ++ G  +  + +F  M   G+  D + +S+ L A   S   +L S + +H  A+K G   
Sbjct: 319 VNCGFPQKGLNVFREMGLNGVKPDPMAMSSILPA--CSQLKDLKSGKTIHGFAVKHGMVE 376

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           ++ V  +L++ Y+ C  +  +  VF+ +P  NVV + S+ + Y   G  ++ L++   M+
Sbjct: 377 DVFVCTALVNLYANCLCVREAQTVFDLMPHRNVVTWNSLSSCYVNCGFPQKGLNVFREMV 436

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
             G+ PD VT L +L  C+    +K G+++
Sbjct: 437 LNGVKPDLVTMLSILHACSDLQDLKSGKVI 466



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 186/408 (45%), Gaps = 43/408 (10%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P    ++++ P C+ +  L S   +  +   +  + +++     ++ +     +  A+ +
Sbjct: 341 PDPMAMSSILPACSQLKDLKSGKTIHGFAVKHGMVEDVFVCTALVNLYANCLCVREAQTV 400

Query: 67  FDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           FD MP R++VT+N L S    CG    P++ L ++ EMV +G+K    T  S+L  CS+ 
Sbjct: 401 FDLMPHRNVVTWNSLSSCYVNCG---FPQKGLNVFREMVLNGVKPDLVTMLSILHACSDL 457

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                G  IH   +  G   ++++ + L+ LY +      A  +FD +P R +A+WN +L
Sbjct: 458 QDLKSGKVIHGFAVRHGMVEDVFVCNALLSLYAKCVCVREAQVVFDLIPHREVASWNGIL 517

Query: 184 RAF-----------------------------------CELSRPDEVLRMYNKMKAEGVE 208
            A+                                    + SR +E + ++ KM+  G +
Sbjct: 518 TAYFTNKEYEKGLYMFSQMNRDEVKADEITWSVVIGGCVKNSRIEEAMEIFRKMQTMGFK 577

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+  +   ++R CS+   L  GK++H +V +  W D ++   NALVD Y+ CG L  ++ 
Sbjct: 578 PDETTIYSILRACSLSECLRMGKEIHCYVFR-HWKDWDLARTNALVDMYAKCGGLSLSRN 636

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +P+ DV SWN+++     +    +AL LF +M L   +P   +F   L+  S +  
Sbjct: 637 VFDMMPIKDVFSWNTMIFANGMHGNGKEALSLFEKMLLSMVKPDSATFTCVLSACSHSML 696

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           V  G QI   +++           + + D+Y +   +E +    +  P
Sbjct: 697 VEEGVQIFNSMSRDHLVEPEAEHYTCVVDIYSRAGCLEEAYGFIQRMP 744


>gi|328774747|gb|AEB39773.1| pentatricopeptide repeat protein 43 [Funaria hygrometrica]
          Length = 1073

 Score =  309 bits (792), Expect = 3e-81,   Method: Compositional matrix adjust.
 Identities = 182/666 (27%), Positives = 346/666 (51%), Gaps = 8/666 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ++ + + P   +  ++   CT+   L   L L +Y  Q   +  +   N  I  + + G 
Sbjct: 293 LIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAGLEQEVLVGNALISMYSRCGS 352

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L +A+++FD + + +  T+N +I+G G+    ++A  L+  M   G +    T++S+L++
Sbjct: 353 LANARQVFDNLRSLNRTTWNAMIAGYGEGLM-EEAFRLFRAMEQKGFQPDKFTYASLLAI 411

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G ++H ++ S G+  +L + + L+ +Y + G    A  +F+++PERN+ +W
Sbjct: 412 CADRADLDRGKELHSQIASTGWQTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISW 471

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N  +   C      E  + + +M+ + V P+ ++F  ++  C+    L+ G+ +H  + +
Sbjct: 472 NAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFITLLNSCTSPEDLERGRYIHGKINQ 531

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  N  VANAL+  Y  CG+L +A++ F  I   D+ SWN++++    +     A +
Sbjct: 532 WGMLSNN-HVANALISMYGRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFD 590

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF + +    +    +F+  L   +   ++  G+ IHG V K GF    + V + L  MY
Sbjct: 591 LFRKYRSEGGKGDKYTFINVLRAVANLEDLDAGRMIHGLVEKGGFGK-DIRVLTTLIKMY 649

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  +  +  VF +   + + C N+++ +  HS   +DA+++F  M  EG+  D  T S
Sbjct: 650 SKCGSLRDAENVFSTVQEKDVVCWNAMLAAYAHSDRGQDALKLFQQMQLEGVNPDSSTYS 709

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           T L A +   +   G  + +H    ++G E++  VS SL++ YSRCG +  + QVFEK+ 
Sbjct: 710 TALNACARLTAVEHG--KKIHAQLKEAGMETDTRVSNSLIEMYSRCGCLCSAKQVFEKML 767

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           S ++  + +++ GY +NG G  AL+  E+M++  ++P+K TF  +L+     G  ++   
Sbjct: 768 SRDINSWNALIAGYCQNGQGNIALEYYELMLRASIVPNKATFTSILSSYAQLGEEEQAFD 827

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
              S+K  + ++   QHY+ M+  LGRAG+L +AEE +++       +MW SLL +CR+H
Sbjct: 828 FLESIKKEWNMEPSEQHYAYMVAALGRAGLLKEAEEFIEEISAESAALMWESLLVACRIH 887

Query: 600 GN-EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
            N E+    V ++L        AV  Q+ + Y+  G +E  + + +T +       +   
Sbjct: 888 LNVELAETAVEHLLDAKAQASPAVCEQLMSIYAAAGRWE-DVSVLKTTMQEAGLVALKSC 946

Query: 659 LIEVNS 664
            IEVNS
Sbjct: 947 TIEVNS 952



 Score =  228 bits (581), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 165/630 (26%), Positives = 310/630 (49%), Gaps = 20/630 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +IY +N  I  + K G +  A  +F  M  +D+V++N +ISG       ++A  L+ +M 
Sbjct: 134 DIYLNNMLISMYSKCGSIEDANNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQ 193

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+K + +TF S+LS C +      G QIH R+   G+  ++ + + L+++Y + G   
Sbjct: 194 REGLKPNQNTFISILSACQSPIALEFGEQIHSRIAKAGYESDVNVSTALINMYCKCGSLE 253

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F+E+ ERN+ +W  M+  + +     E L ++ K+   G++PN +SF  ++  C+
Sbjct: 254 LARKVFNEMRERNVVSWTAMISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACT 313

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L EG +LH+++ + G ++  + V NAL+  YS CGSL  A++ FD +   +  +WN
Sbjct: 314 NPNDLGEGLKLHAYIKQAG-LEQEVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWN 372

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y +  L+ +A  LF  M+    +P   ++   L   +   ++  GK++H  +   
Sbjct: 373 AMIAGYGE-GLMEEAFRLFRAMEQKGFQPDKFTYASLLAICADRADLDRGKELHSQIAST 431

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G+    + V +AL  MY KC   E +  VF   P R++   N+ ++        K+A + 
Sbjct: 432 GW-QTDLTVATALISMYAKCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQA 490

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  + +  D +T  T L   S ++  +L   R +H    + G  SN  V+ +L+  Y
Sbjct: 491 FKQMRRDDVNPDHITFITLLN--SCTSPEDLERGRYIHGKINQWGMLSNNHVANALISMY 548

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            RCG++  + +VF +I   ++  + +++    ++G    A D+       G   DK TF+
Sbjct: 549 GRCGNLADAREVFYRIRRRDLGSWNAMIAANVQHGANGSAFDLFRKYRSEGGKGDKYTFI 608

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL    +   +  G+++ + +    G   D +  + +I M  + G L  AE +   T  
Sbjct: 609 NVLRAVANLEDLDAGRMI-HGLVEKGGFGKDIRVLTTLIKMYSKCGSLRDAENVF-STVQ 666

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANIL--MELEPV--DFAVYSQVSNFYSEIGEFE- 637
             D + W+++L +   H +   G+    +   M+LE V  D + YS   N  + +   E 
Sbjct: 667 EKDVVCWNAML-AAYAHSDR--GQDALKLFQQMQLEGVNPDSSTYSTALNACARLTAVEH 723

Query: 638 ---VSMQIRETALARKLTRDIGHSLIEVNS 664
              +  Q++E  +    TR + +SLIE+ S
Sbjct: 724 GKKIHAQLKEAGMETD-TR-VSNSLIEMYS 751



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/497 (24%), Positives = 259/497 (52%), Gaps = 9/497 (1%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++ + + ++  L  C  A    EG ++H  + S  F  ++Y+ + L+ +Y + G    A
Sbjct: 95  GVQANLNFYARRLQQCVLAKSLAEGKKVHDHMRSAQFKPDIYLNNMLISMYSKCGSIEDA 154

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            ++F  + ++++ +WN M+  +    R  E   ++ +M+ EG++PN  +F  ++  C   
Sbjct: 155 NNVFQAMEDKDVVSWNAMISGYALHGRDQEAADLFYQMQREGLKPNQNTFISILSACQSP 214

Query: 225 MLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
           + L+ G+Q+HS + K G+  DVN  V+ AL++ Y  CGSL  A+K F+ +   +V+SW +
Sbjct: 215 IALEFGEQIHSRIAKAGYESDVN--VSTALINMYCKCGSLELARKVFNEMRERNVVSWTA 272

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S Y  +    +AL LF ++     +P+  SF   L   +   ++  G ++H Y+ + G
Sbjct: 273 MISGYVQHGDSREALALFRKLIRSGIQPNKVSFASILGACTNPNDLGEGLKLHAYIKQAG 332

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            +   V V +AL  MY +C  + ++  VF++    +    N+++      G +++A  +F
Sbjct: 333 LEQ-EVLVGNALISMYSRCGSLANARQVFDNLRSLNRTTWNAMIAG-YGEGLMEEAFRLF 390

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M  +G   D+ T ++ L   +  A  + G  + LH     +G+++++ V+ +L+  Y+
Sbjct: 391 RAMEQKGFQPDKFTYASLLAICADRADLDRG--KELHSQIASTGWQTDLTVATALISMYA 448

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG  E + +VF ++P  NV+ + + ++   R+ +G+EA    + M +  + PD +TF+ 
Sbjct: 449 KCGSPEEARKVFNQMPERNVISWNAFISCCCRHDLGKEAFQAFKQMRRDDVNPDHITFIT 508

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L  C     ++ G+ +   +   +G+ ++    + +I M GR G L  A E+  +    
Sbjct: 509 LLNSCTSPEDLERGRYIHGKINQ-WGMLSNNHVANALISMYGRCGNLADAREVFYRIR-R 566

Query: 584 GDCMMWSSLLRSCRVHG 600
            D   W++++ +   HG
Sbjct: 567 RDLGSWNAMIAANVQHG 583


>gi|168003497|ref|XP_001754449.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162694551|gb|EDQ80899.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 723

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 170/573 (29%), Positives = 312/573 (54%), Gaps = 5/573 (0%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           K+AL + + M+  G +  +  F  +L  C+      +G ++H  +L  G   N Y+ + L
Sbjct: 29  KEALGIMNTMILQGTRVYSDVFRGLLQECARLRSLEQGREVHAAILKSGIQPNRYLENTL 88

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           + +Y + G    A  +FD + +RN+ +W  M+ AF   ++  E  + Y  MK  G +P+ 
Sbjct: 89  LSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAGNKNLEAFKCYETMKLAGCKPDK 148

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++F  ++   +   LL  G+++H  +++ G +++   V  +LV  Y+ CG + +A+  FD
Sbjct: 149 VTFVSLLNAFTNPELLQLGQKVHMEIVEAG-LELEPRVGTSLVGMYAKCGDISKARVIFD 207

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  +V++W  +++ YA    +  ALEL   MQ     P+  +F   L   +    +  
Sbjct: 208 RLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVAPNKITFASILQGCTTPAALEH 267

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           GK++H Y+ + G+    + V ++L  MY KC  +E +  +F   P R +    +++T   
Sbjct: 268 GKKVHRYIIQSGYGR-ELWVVNSLITMYCKCGGLEEARKLFSDLPHRDVVTWTAMVTGYA 326

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
             G   +A+ +F  M  +GI  D++T ++ L   S S+ A L   + +H   + +G+  +
Sbjct: 327 QLGFHDEAINLFRRMQQQGIKPDKMTFTSVLT--SCSSPAFLQEGKRIHQQLVHAGYNLD 384

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY-SRNGMGREALDMLEVMI 510
           + +  +L+  Y++CG ++ +  VF ++   NVV +T+I+ G  +++G  REAL+  + M 
Sbjct: 385 VYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIITGCCAQHGRCREALEYFDQMK 444

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
           ++G+ PDKVTF  VL+ C H G+V+EG+  F SM   YGI    +HYSC +D+LGRAG L
Sbjct: 445 KQGIKPDKVTFTSVLSACTHVGLVEEGRKHFRSMYLDYGIKPMVEHYSCFVDLLGRAGHL 504

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           ++AE ++   P      +W +LL +CRVH +   G R A  +++L+P D   Y  +S+ Y
Sbjct: 505 EEAENVILSMPFIPGPSVWGALLSACRVHSDVERGERAAENVLKLDPDDDGAYVALSSIY 564

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +  G +E + ++R+    R + ++ G S IEV+
Sbjct: 565 AAAGRYEDAEKVRQVMEKRDVVKEPGQSWIEVD 597



 Score =  212 bits (539), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 130/459 (28%), Positives = 226/459 (49%), Gaps = 11/459 (2%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           + +L S  QPN     Y  N  +  + K G L  A+++FD +  R++V++  +I      
Sbjct: 71  AAILKSGIQPNR----YLENTLLSMYAKCGSLTDARRVFDSIRDRNIVSWTAMIEAFVAG 126

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
               +A   Y+ M   G K    TF S+L+  +N      G ++H  ++  G  L   +G
Sbjct: 127 NKNLEAFKCYETMKLAGCKPDKVTFVSLLNAFTNPELLQLGQKVHMEIVEAGLELEPRVG 186

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + LV +Y + G   +A  +FD LPE+N+ TW L++  + +  + D  L +   M+   V 
Sbjct: 187 TSLVGMYAKCGDISKARVIFDRLPEKNVVTWTLLIAGYAQQGQVDVALELLETMQQAEVA 246

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           PN ++F  +++GC+    L+ GK++H ++I+ G+    ++V N+L+  Y  CG L EA+K
Sbjct: 247 PNKITFASILQGCTTPAALEHGKKVHRYIIQSGY-GRELWVVNSLITMYCKCGGLEEARK 305

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +P  DV++W ++V+ YA      +A+ LF RMQ    +P   +F   L   S    
Sbjct: 306 LFSDLPHRDVVTWTAMVTGYAQLGFHDEAINLFRRMQQQGIKPDKMTFTSVLTSCSSPAF 365

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  GK+IH  +   G++   V++QSAL  MY KC  ++ +  VF     R++    +++T
Sbjct: 366 LQEGKRIHQQLVHAGYNL-DVYLQSALVSMYAKCGSMDDASLVFNQMSERNVVAWTAIIT 424

Query: 389 S-LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
                 G  ++A+E F  M  +GI  D+VT ++ L A +       G  +      +  G
Sbjct: 425 GCCAQHGRCREALEYFDQMKKQGIKPDKVTFTSVLSACTHVGLVEEGR-KHFRSMYLDYG 483

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEK---IPSPNV 483
            +  +      +D   R GH+E +  V      IP P+V
Sbjct: 484 IKPMVEHYSCFVDLLGRAGHLEEAENVILSMPFIPGPSV 522


>gi|449465002|ref|XP_004150218.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
 gi|449500809|ref|XP_004161200.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 926

 Score =  309 bits (791), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 188/612 (30%), Positives = 329/612 (53%), Gaps = 8/612 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +VK G L   + +FD++    +  +NL+IS      +  +++ L+ +M+  GIK ++ TF
Sbjct: 195 YVKCGDLKEGRMVFDKLSESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTF 254

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR-ALDLFDELP 172
           SS+L   +      EG Q+H  +  LGF     + + L+  Y  +G  VR A  LFDEL 
Sbjct: 255 SSILKCFAAVARVEEGRQVHGLICKLGFNSYNTVVNSLISFYF-VGRKVRCAQKLFDELT 313

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGK 231
           +R++ +WN M+  + +    D  + ++ KM   GV+ +  +   +   C+ IG LL  GK
Sbjct: 314 DRDVISWNSMISGYVKNGLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLL-LGK 372

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            LHS+ IK   +D  +   N L+D YS CG L  A + F+ +    V+SW S+++ Y   
Sbjct: 373 VLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVRE 432

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
            L   A++LF  M+     P + +    LN  +  GN+  GK +H Y+ +   +  S  V
Sbjct: 433 GLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSGKIVHDYIRENNLETNSF-V 491

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +ALTDMY KC  ++ +  VF     + +   N+++     +    +A+ +F  M  E  
Sbjct: 492 SNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEMQRES- 550

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D  T++  L A +  A+ + G  R +H  A+++G+  +  V+ +++D Y +CG + L+
Sbjct: 551 KPDGTTVACILPACASLAALDKG--REIHGYALRNGYSEDKYVTNAVVDMYVKCGLLVLA 608

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             +F+ IP+ ++V +T ++ GY  +G G EA++    M   G+ PD+V+F+ +L  C+HS
Sbjct: 609 RSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGIEPDEVSFISILYACSHS 668

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G++ EG  +FN MK    I+ + +HY+CM+D+L R G L KA + ++  P   D  +W +
Sbjct: 669 GLLDEGWKIFNIMKKECQIEPNLEHYACMVDLLARTGNLVKAHKFIKAMPIKPDATIWGA 728

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL  CR+H +  +  +VA  + ELEP +   Y  ++N Y+E  ++E   ++R+    R L
Sbjct: 729 LLCGCRIHHDVKLAEKVAERIFELEPENTGYYVLLANIYAEAEKWEEVQKLRKKIGQRGL 788

Query: 652 TRDIGHSLIEVN 663
            ++ G S IE+ 
Sbjct: 789 KKNPGCSWIEIK 800



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/490 (26%), Positives = 244/490 (49%), Gaps = 8/490 (1%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
            + S+L +C+      +G ++   + S G  ++  +G  LV +Y++ G       +FD+L
Sbjct: 152 AYCSILQLCAERKSIRDGRRVRSIIESSGVMIDGILGVKLVFMYVKCGDLKEGRMVFDKL 211

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            E  +  WNLM+  +       E + ++ +M   G++PN  +F  +++  +    ++EG+
Sbjct: 212 SESKIFLWNLMISEYSGSGNYGESINLFKQMLELGIKPNSYTFSSILKCFAAVARVEEGR 271

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           Q+H  + KLG+   N  V N+L+ FY     +  A+K FD +   DVISWNS++S Y   
Sbjct: 272 QVHGLICKLGFNSYNT-VVNSLISFYFVGRKVRCAQKLFDELTDRDVISWNSMISGYVKN 330

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
            L    +E+F +M +      + + V      +  G +  GK +H Y  K       V  
Sbjct: 331 GLDDRGIEIFIKMLVFGVDIDLATMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRF 390

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            + L DMY KC  + S++ VFE    +++    S++T  +  G    A+++F  M   G+
Sbjct: 391 NNTLLDMYSKCGDLNSAIRVFERMDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGV 450

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D   +++ L A ++  + NL S +++H    ++  E+N  VS +L D Y++CG ++ +
Sbjct: 451 VPDVYAVTSILNACAI--NGNLKSGKIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDA 508

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
           H VF  +   +V+ + +++ GY++N +  EAL +   M QR   PD  T  C+L  C   
Sbjct: 509 HDVFSHMKKKDVISWNTMIGGYTKNSLPNEALTLFAEM-QRESKPDGTTVACILPACASL 567

Query: 532 GMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
             + +G+ +   ++++  G   D+   + ++DM  + G+L  A  L    P   D + W+
Sbjct: 568 AALDKGREIHGYALRN--GYSEDKYVTNAVVDMYVKCGLLVLARSLFDMIP-NKDLVSWT 624

Query: 591 SLLRSCRVHG 600
            ++    +HG
Sbjct: 625 VMIAGYGMHG 634



 Score =  150 bits (378), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 89/332 (26%), Positives = 173/332 (52%), Gaps = 4/332 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN--IYSSNRTIDDFVKSGHLNSAKKLFDE 69
           T+  +   C +I  L    +L SY      L+  +  +N  +D + K G LNSA ++F+ 
Sbjct: 354 TMVNVFVACANIGTLLLGKVLHSYSIKAATLDREVRFNNTLLDMYSKCGDLNSAIRVFER 413

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  + +V++  +I+G  +      A+ L+DEM S G+       +S+L+ C+  G    G
Sbjct: 414 MDEKTVVSWTSMITGYVREGLSDGAIKLFDEMKSRGVVPDVYAVTSILNACAINGNLKSG 473

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
             +H  +       N ++ + L D+Y + G    A D+F  + ++++ +WN M+  + + 
Sbjct: 474 KIVHDYIRENNLETNSFVSNALTDMYAKCGSMKDAHDVFSHMKKKDVISWNTMIGGYTKN 533

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           S P+E L ++ +M+ E  +P+G +   ++  C+    LD+G+++H + ++ G+ + + +V
Sbjct: 534 SLPNEALTLFAEMQRES-KPDGTTVACILPACASLAALDKGREIHGYALRNGYSE-DKYV 591

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            NA+VD Y  CG L+ A+  FD IP  D++SW  +++ Y  +    +A+  F +M++   
Sbjct: 592 TNAVVDMYVKCGLLVLARSLFDMIPNKDLVSWTVMIAGYGMHGYGSEAINTFNQMRMTGI 651

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            P   SF+  L   S +G +  G +I   + K
Sbjct: 652 EPDEVSFISILYACSHSGLLDEGWKIFNIMKK 683


>gi|357477865|ref|XP_003609218.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355510273|gb|AES91415.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1134

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 190/632 (30%), Positives = 331/632 (52%), Gaps = 18/632 (2%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++Y  +  ++ F + G ++ AK +F +M  R+ VT N L+ G  +    ++A  ++ EM 
Sbjct: 385  DLYVGSALVNGFARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMK 444

Query: 103  ------SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLY 155
                  S  +    STF+   ++        +G ++H  +   G     + IG+ LV++Y
Sbjct: 445  DLVEINSESLVVLLSTFTEFSNLKEGK---RKGQEVHAYLFRSGLVDARISIGNALVNMY 501

Query: 156  MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
             +      A  +F  +P ++  +WN M+       R +E +  ++ MK  G+ P+  S  
Sbjct: 502  GKCTAIDNACSVFQLMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVI 561

Query: 216  YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
              +  CS    L  G+Q+H    K G +D+++ V+NAL+  Y+   S+ E +K F  +P 
Sbjct: 562  STLSSCSSLGWLTLGRQIHGEGFKWG-LDLDVSVSNALLTLYAETDSINECQKVFFQMPE 620

Query: 276  DDVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             D +SWNS +   A Y+  +  AL+ F  M     RP+  +F+  L   S    +  G Q
Sbjct: 621  YDQVSWNSFIGALAKYEASVLQALKYFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQ 680

Query: 335  IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC-CNSLMTSLLHS 393
            IH  + K      +  +++AL   YGKC  +E    +F     R  E   NS+++  LHS
Sbjct: 681  IHALILKYSVADDNA-IENALLAFYGKCEQMEDCEIIFSRMSERRDEVSWNSMISGYLHS 739

Query: 394  GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
            G +  A+++   M+  G  LD  T +T L A +  A+   G    +H CA+++  ES++ 
Sbjct: 740  GILHKAMDLVWPMMQRGQKLDGFTFATVLSACASVATLERG--MEVHACAVRACLESDVV 797

Query: 454  VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
            V  +L+D Y++CG I+ + + FE +P  N+  + S+++GY+R+G G++AL +   M Q G
Sbjct: 798  VGSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGQKALKIFTRMKQHG 857

Query: 514  LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
              PD VTF+ VL+ C+H G+V EG   F SM  VYG+    +H+SCM+D+LGRAG + K 
Sbjct: 858  QSPDHVTFVGVLSACSHVGLVDEGYKHFKSMGEVYGLSPRIEHFSCMVDLLGRAGDVKKI 917

Query: 574  EELLQQTPGGGDCMMWSSLLRS-CRVHG-NEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
            E+ ++  P   + ++W ++L + CR +G N  +G+R A +L+ELEP +   Y  +SN ++
Sbjct: 918  EDFIKTMPMDPNILIWRTVLGACCRANGRNTELGQRAAKMLIELEPQNAVNYVLLSNMHA 977

Query: 632  EIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
              G +E  ++ R       + +D G S + + 
Sbjct: 978  AGGNWEDVVEARLAMRKAAVKKDAGCSWVNMK 1009



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 157/643 (24%), Positives = 316/643 (49%), Gaps = 34/643 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  I+ +V+ G+L SA+KLFDEMP +++V+++ LISG  + R P +A  L+  ++
Sbjct: 174 DVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNRMPDEACSLFKGVI 233

Query: 103 SHGIKESASTFSSVLSVCSNAGF--YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           S G+  +     S L  C   G      G+QIH  +  L    ++ + + L+ +Y     
Sbjct: 234 SSGLLPNHFAVGSALRACQQCGSTGIKLGMQIHAFICKLPCVSDMILSNVLMSMYSDCSG 293

Query: 161 SV-RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE----PNGLSFC 215
           S+  A  +FDE+  RN  TWN ++  +C         ++++ M+ EGVE    PN  + C
Sbjct: 294 SIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQMEGVELNLRPNEYTLC 353

Query: 216 YMVR-GCSI---GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            +V   CS+   G++L E  Q+ + + K G++  +++V +ALV+ ++  G +  AK  F 
Sbjct: 354 SLVTAACSLADCGLVLLE--QMLTRIEKSGFLR-DLYVGSALVNGFARYGLMDCAKMIFK 410

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS------IRSFVEFLNFASR 325
            +   + ++ N ++   A      +A ++F  M+   +  S      + +F EF N    
Sbjct: 411 QMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDLVEINSESLVVLLSTFTEFSNLKEG 470

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
                 G+++H Y+ + G     + + +AL +MYGKC  I+++ +VF+  P +     NS
Sbjct: 471 KRK---GQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQLMPSKDTVSWNS 527

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++ L H+   ++AV  F  M   G+     ++ +TL + S      LG  R +H    K
Sbjct: 528 MISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTLG--RQIHGEGFK 585

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR-NGMGREALD 504
            G + +++VS +L+  Y+    I    +VF ++P  + V + S +   ++      +AL 
Sbjct: 586 WGLDLDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALK 645

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
               M+Q G  P++VTF+ +LA  +   ++  G  + +++   Y +  D    + ++   
Sbjct: 646 YFLEMMQAGWRPNRVTFINILAAVSSFSVLGLGHQI-HALILKYSVADDNAIENALLAFY 704

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR---VANILMELEPVDFA 621
           G+   ++  E +  +     D + W+S++ S  +H   I+ +    V  ++   + +D  
Sbjct: 705 GKCEQMEDCEIIFSRMSERRDEVSWNSMI-SGYLHSG-ILHKAMDLVWPMMQRGQKLDGF 762

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
            ++ V +  + +   E  M++   A+   L  D  +G +L+++
Sbjct: 763 TFATVLSACASVATLERGMEVHACAVRACLESDVVVGSALVDM 805



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/477 (23%), Positives = 237/477 (49%), Gaps = 21/477 (4%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            +H ++   GF  +++  + L+++Y+R+G  V A  LFDE+P++NL +W+ ++  + +  
Sbjct: 161 HLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSCLISGYTQNR 220

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC----SIGMLLDEGKQLHSHVIKLGWVDVN 246
            PDE   ++  + + G+ PN  +    +R C    S G+ L  G Q+H+ + KL  V  +
Sbjct: 221 MPDEACSLFKGVISSGLLPNHFAVGSALRACQQCGSTGIKL--GMQIHAFICKLPCVS-D 277

Query: 247 IFVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           + ++N L+  YS C GS+ +A + FD I   + ++WNSI+S+Y        A +LF  MQ
Sbjct: 278 MILSNVLMSMYSDCSGSIDDAHRVFDEIKFRNSVTWNSIISVYCRRGDAVSAFKLFSVMQ 337

Query: 306 L----CRKRPSIRSFVEFLNFASRTGN--VYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +       RP+  +    +  A    +  +   +Q+   + K GF    ++V SAL + +
Sbjct: 338 MEGVELNLRPNEYTLCSLVTAACSLADCGLVLLEQMLTRIEKSGFLR-DLYVGSALVNGF 396

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +  +++ +  +F+    R+    N LM  L      ++A ++F  M D  + ++  +L 
Sbjct: 397 ARYGLMDCAKMIFKQMYDRNAVTMNGLMVGLARQHQGEEAAKVFKEMKDL-VEINSESLV 455

Query: 420 TTLKALSVSASANLGSCR--LLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVFE 476
             L   +  ++   G  +   +H    +SG  ++ I++  +L++ Y +C  I+ +  VF+
Sbjct: 456 VLLSTFTEFSNLKEGKRKGQEVHAYLFRSGLVDARISIGNALVNMYGKCTAIDNACSVFQ 515

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            +PS + V + S+++G   N    EA+     M + G++P   + +  L+ C+  G +  
Sbjct: 516 LMPSKDTVSWNSMISGLDHNERFEEAVSCFHTMKRNGMVPSNFSVISTLSSCSSLGWLTL 575

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           G+ +       +G+D D    + ++ +      +++ +++  Q P   D + W+S +
Sbjct: 576 GRQIHGE-GFKWGLDLDVSVSNALLTLYAETDSINECQKVFFQMP-EYDQVSWNSFI 630



 Score =  115 bits (288), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 76/290 (26%), Positives = 144/290 (49%), Gaps = 3/290 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK-QALYLYDE 100
           L++  SN  +  + ++  +N  +K+F +MP  D V++N  I    K+     QAL  + E
Sbjct: 590 LDVSVSNALLTLYAETDSINECQKVFFQMPEYDQVSWNSFIGALAKYEASVLQALKYFLE 649

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  G + +  TF ++L+  S+      G QIH  +L      +  I + L+  Y +   
Sbjct: 650 MMQAGWRPNRVTFINILAAVSSFSVLGLGHQIHALILKYSVADDNAIENALLAFYGKCEQ 709

Query: 161 SVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                 +F  + E R+  +WN M+  +       + + +   M   G + +G +F  ++ 
Sbjct: 710 MEDCEIIFSRMSERRDEVSWNSMISGYLHSGILHKAMDLVWPMMQRGQKLDGFTFATVLS 769

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+ G ++H+  ++   ++ ++ V +ALVD Y+ CG +  A + F+ +PV ++ 
Sbjct: 770 ACASVATLERGMEVHACAVR-ACLESDVVVGSALVDMYAKCGKIDYASRFFELMPVRNIY 828

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           SWNS++S YA +     AL++F RM+   + P   +FV  L+  S  G V
Sbjct: 829 SWNSMISGYARHGHGQKALKIFTRMKQHGQSPDHVTFVGVLSACSHVGLV 878



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 28/104 (26%), Positives = 57/104 (54%)

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            S++L     LH    K+GF  ++    +L++ Y R G++  + ++F+++P  N+V ++ 
Sbjct: 152 TSSSLYDANHLHLQLYKTGFTDDVFFCNTLINIYVRIGNLVSARKLFDEMPQKNLVSWSC 211

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           +++GY++N M  EA  + + +I  GL+P+       L  C   G
Sbjct: 212 LISGYTQNRMPDEACSLFKGVISSGLLPNHFAVGSALRACQQCG 255


>gi|224092360|ref|XP_002309575.1| predicted protein [Populus trichocarpa]
 gi|222855551|gb|EEE93098.1| predicted protein [Populus trichocarpa]
          Length = 653

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 171/527 (32%), Positives = 298/527 (56%), Gaps = 4/527 (0%)

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
           +GFG +L + + L+ +Y + G    A D+FD + +RN+ +W  ++    +   P E L +
Sbjct: 1   MGFGFDLMLSNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLL 60

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           ++KM   GV+PN  +F   ++ C +   LD G+Q+H   +K G+  VN+ V N+++D YS
Sbjct: 61  FSKMGLSGVKPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNV-VGNSIIDMYS 119

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            CG + EA   F+ +PV ++ISWN++++ Y        AL LF +MQ         +F  
Sbjct: 120 KCGRINEAACMFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTS 179

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHG-SVHVQSALTDMYGKCNVIESSVAVFESAPG 377
            L   S  G +  G QIH ++   GF +  +  V  AL D+Y KC  +  +  VF     
Sbjct: 180 TLKACSDLGAIKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEE 239

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           + +    +L+      GN+ +++E+F  + +  I +D   LS+ +   +  A    G  +
Sbjct: 240 KHVISWTALILGYAQEGNLAESMELFRQLRESSIQVDGFILSSMMGVFADFALVQQG--K 297

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H  AIK     +I+V  S++D Y +CG I  + ++F ++P+ NV+ +T ++ GY ++G
Sbjct: 298 QMHAFAIKVPSGVDISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHG 357

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
           +G+EA+ + + M      PD VT+L VL GC+HSG+V++GQ  F+ + S +GI A  +HY
Sbjct: 358 LGKEAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSYHGIKARVEHY 417

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617
           +CM+D+LGRAG L +A+ L+   P   +  +W +LL +CRVHG+  +G+ V  IL+ L+ 
Sbjct: 418 ACMVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKEVGGILLRLDS 477

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +   Y  +SN Y++ G ++   +IRE   ++KL ++ G S +E++ 
Sbjct: 478 ENPVNYVMMSNIYADAGYWKECERIRELVKSKKLKKEAGRSWVEIDK 524



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 128/468 (27%), Positives = 225/468 (48%), Gaps = 23/468 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  I  + K G L  A  +FD M  R++V++  L+ G  +  +P ++L L+ +M   G+
Sbjct: 10  SNDLIVMYGKCGRLGVACDVFDRMLKRNVVSWTALMCGHIQNGNPLESLLLFSKMGLSGV 69

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K +  TFS+ L  C        G QIH   +  GF +   +G+ ++D+Y + G    A  
Sbjct: 70  KPNDFTFSTNLKACGLLNGLDIGRQIHDICVKTGFDMVNVVGNSIIDMYSKCGRINEAAC 129

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F+ +P RNL +WN M+  +      ++ L ++ KM+  G   +  +F   ++ CS    
Sbjct: 130 MFEVMPVRNLISWNAMIAGYTVAGFCEKALVLFQKMQEVGGFLDEFTFTSTLKACSDLGA 189

Query: 227 LDEGKQLHSHVIKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
           + EG Q+H+ +I  G++  VN  VA AL+D Y  CG L  A++ F  I    VISW +++
Sbjct: 190 IKEGNQIHAFLITGGFLYSVNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALI 249

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFV------EFLNFASRTGNVYFGKQIHGYV 339
             YA    + +++ELF   QL      +  F+       F +FA     V  GKQ+H + 
Sbjct: 250 LGYAQEGNLAESMELF--RQLRESSIQVDGFILSSMMGVFADFAL----VQQGKQMHAFA 303

Query: 340 TKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            K+  G D   + V +++ DMY KC +I  +  +F   P R++     ++T     G  K
Sbjct: 304 IKVPSGVD---ISVCNSILDMYLKCGMINEAERLFSEMPARNVISWTVMITGYGKHGLGK 360

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+ +F  M  +    D+VT    L   S S     G       C+   G ++ +     
Sbjct: 361 EAIRLFDEMQLDSTEPDDVTYLAVLLGCSHSGLVEKGQEYFSRLCSY-HGIKARVEHYAC 419

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGRE 501
           ++D   R G ++ +  + + +P   NV  + ++++    +G   +G+E
Sbjct: 420 MVDLLGRAGRLKEAKNLVDSMPLEANVGIWQTLLSACRVHGDLELGKE 467



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/256 (22%), Positives = 136/256 (53%), Gaps = 4/256 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +N   +   ID +VK G L  A+++F  +  + ++++  LI G  +  +  +++ L+ ++
Sbjct: 209 VNTAVAGALIDLYVKCGKLFMARRVFSHIEEKHVISWTALILGYAQEGNLAESMELFRQL 268

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               I+      SS++ V ++     +G Q+H   + +  G+++ + + ++D+Y++ G  
Sbjct: 269 RESSIQVDGFILSSMMGVFADFALVQQGKQMHAFAIKVPSGVDISVCNSILDMYLKCGMI 328

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LF E+P RN+ +W +M+  + +     E +R++++M+ +  EP+ +++  ++ GC
Sbjct: 329 NEAERLFSEMPARNVISWTVMITGYGKHGLGKEAIRLFDEMQLDSTEPDDVTYLAVLLGC 388

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVIS 280
           S   L+++G++  S +     +   +     +VD     G L EAK   D +P++ +V  
Sbjct: 389 SHSGLVEKGQEYFSRLCSYHGIKARVEHYACMVDLLGRAGRLKEAKNLVDSMPLEANVGI 448

Query: 281 WNSIVS---IYADYDL 293
           W +++S   ++ D +L
Sbjct: 449 WQTLLSACRVHGDLEL 464


>gi|124360536|gb|ABN08546.1| Tetratricopeptide-like helical [Medicago truncatula]
          Length = 1083

 Score =  308 bits (790), Expect = 4e-81,   Method: Compositional matrix adjust.
 Identities = 182/629 (28%), Positives = 338/629 (53%), Gaps = 15/629 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI  S + I+ +V  G ++ ++  FD +  +++ ++N +IS   +F    +A+   +++ 
Sbjct: 53  NIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLF 112

Query: 103 SH----GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           S      ++    TF  +L  C +     +G ++HC V  +GF  ++++ + LV LY R 
Sbjct: 113 SMCGGGHLRPDFYTFPPILKACVS---LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRY 169

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  +F ++P +++ +WN M+  FC+       L + N+MK EGV+ + ++   ++
Sbjct: 170 GVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASIL 229

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+    +  G  +H HV+K G +D ++FV+NAL++ YS  G L +A+  FD + V D+
Sbjct: 230 PVCAQSDDVINGVLIHLHVLKHG-LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDL 288

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWNSI++ Y   +    AL  F  MQL   RP + + V   +  S+  +    + I G+
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGF 348

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V +  +    V + +AL +MY K   +  +  VF+  P +     N+L+T    +G   +
Sbjct: 349 VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASE 408

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVS 455
           A++ +  M +     D +    T  ++ + A +++G+ +    +H   IK+    ++ V+
Sbjct: 409 AIDAYNMMEE---CRDTIPNQGTWVSI-IPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA 464

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             L+D Y +CG +E +  +F +IP    V + +I+     +G G EAL + + M+   + 
Sbjct: 465 TCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVK 524

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
            D +TF+ +L+ C+HSG+V EGQ  F+ M+  YGI    +HY CM+D+LGRAG L+KA E
Sbjct: 525 ADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYE 584

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L++  P   D  +W +LL +C+++GN  +G   ++ L+E++  +   Y  +SN Y+   +
Sbjct: 585 LVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEK 644

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +E  +++R  A  R L +  G S + V S
Sbjct: 645 WEGVIKVRSLARDRGLRKTPGWSSVVVGS 673



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 252/497 (50%), Gaps = 20/497 (4%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           + F+++ + C N        ++H  +L  G   N+ + + L++LY+  G    +   FD 
Sbjct: 23  ADFNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDY 79

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKM----KAEGVEPNGLSFCYMVRGCSIGML 226
           + ++N+ +WN ++ A+    +  E +   N++        + P+  +F  +++ C   + 
Sbjct: 80  IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC---VS 136

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +GK++H  V K+G+ D ++FVA +LV  YS  G L  A K F  +PV DV SWN+++S
Sbjct: 137 LVDGKKVHCCVFKMGFED-DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMIS 195

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            +        AL +  RM+    +    +    L   +++ +V  G  IH +V K G D 
Sbjct: 196 GFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD- 254

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V +AL +MY K   ++ +  VF+    R L   NS++ +   + +   A+  F  M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              GI  D +T+  +L ++    S    S  +L     +   + ++ +  +L++ Y++ G
Sbjct: 315 QLGGIRPDLLTV-VSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLG 373

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVL 525
           ++  +H VF+++P  + + + +++ GY++NG+  EA+D   +M + R  IP++ T++ ++
Sbjct: 374 YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSII 433

Query: 526 AGCNHSGMVKEGQLVFNSM--KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
              +H G +++G  +   +   S+Y    D    +C+ID+ G+ G L+ A  L  + P  
Sbjct: 434 PAYSHVGALQQGMKIHAKLIKNSLY---LDVFVATCLIDLYGKCGRLEDAMSLFYEIP-R 489

Query: 584 GDCMMWSSLLRSCRVHG 600
              + W++++ S  +HG
Sbjct: 490 DTSVPWNAIIASLGIHG 506


>gi|296082505|emb|CBI21510.3| unnamed protein product [Vitis vinifera]
          Length = 746

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 176/628 (28%), Positives = 342/628 (54%), Gaps = 12/628 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY-D 99
           Q + + +N  I+   KS  +++A+ +FD+MP ++++T++ ++S   +  + ++AL ++ D
Sbjct: 81  QSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVD 140

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
                G   +    +SV+  C+  G   +G Q+H  V+  GF  ++Y+G+ L+D Y + G
Sbjct: 141 LQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGFDQDVYVGTSLIDFYSKNG 200

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD+L E+   TW  ++  + +  R    L ++ +M+   V P+      ++ 
Sbjct: 201 NIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLS 260

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS+   L+ GKQ+H++V++ G  ++++ V N L+DFY+ C  +   +K FD + V ++I
Sbjct: 261 ACSMLEFLEGGKQIHAYVLRRG-TEMDVSVVNVLIDFYTKCNRVKAGRKLFDQMVVKNII 319

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +++S Y      ++A++LF  M     +P   +    L        +  G+Q+H Y 
Sbjct: 320 SWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTSCGSREALEQGRQVHAYT 379

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K   +     V++ L DMY K N++  +  VF+    +++   N+++        + +A
Sbjct: 380 IKANLESDEF-VKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMIEGYSSQEKLSEA 438

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSC 456
           +E+F  M       +E T      A  ++A++NL S R     H   +K G +    V+ 
Sbjct: 439 LELFHEMRVRLQKPNEFTF-----AALITAASNLASLRHGQQFHNQLVKMGLDFCPFVTN 493

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG IE + ++F      +VVC+ S+++ ++++G   EAL M   M++ G+ P
Sbjct: 494 ALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALGMFREMMKEGIQP 553

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + VTF+ VL+ C+H+G V++G   FNSM   +GI    +HY+C++ +LGR+G L +A+E 
Sbjct: 554 NYVTFVAVLSACSHAGRVEDGLNHFNSMPG-FGIKPGTEHYACVVSLLGRSGKLFEAKEF 612

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +++ P     ++W SLL +CR+ GN  +G+  A + +  +P D   Y  +SN ++  G +
Sbjct: 613 IEKMPIEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTDPKDSGSYILLSNIFASKGMW 672

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVNS 664
               ++R+   + ++ ++ G S IEVN+
Sbjct: 673 ADVKKVRDRMDSSEVVKEPGRSWIEVNN 700



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 114/470 (24%), Positives = 235/470 (50%), Gaps = 7/470 (1%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH +++  G   + ++ + L+++  +      A  +FD++P +NL TW+ M+  + +   
Sbjct: 71  IHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQGY 130

Query: 192 PDEVLRMY-NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            +E L ++ +  +  G  PN      ++R C+   ++++G QLH  V++ G+ D +++V 
Sbjct: 131 SEEALMVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRSGF-DQDVYVG 189

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +L+DFYS  G++ EA+  FD +     ++W +I++ Y        +LELF +M+     
Sbjct: 190 TSLIDFYSKNGNIEEARLVFDQLSEKTAVTWTTIIAGYTKCGRSAVSLELFAQMRETNVV 249

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P        L+  S    +  GKQIH YV + G +   V V + L D Y KCN +++   
Sbjct: 250 PDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEM-DVSVVNVLIDFYTKCNRVKAGRK 308

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F+    +++    ++++  + +    +A+++FG M   G   D    ++ L   S  + 
Sbjct: 309 LFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLT--SCGSR 366

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
             L   R +H   IK+  ES+  V   L+D Y++   +  + +VF+ +   NV+ + +++
Sbjct: 367 EALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISYNAMI 426

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            GYS      EAL++   M  R   P++ TF  ++   ++   ++ GQ   N +  + G+
Sbjct: 427 EGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVKM-GL 485

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           D      + ++DM  + G +++A ++   +    D + W+S++ +   HG
Sbjct: 486 DFCPFVTNALVDMYAKCGSIEEARKMFNSSI-WRDVVCWNSMISTHAQHG 534



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 104/415 (25%), Positives = 202/415 (48%), Gaps = 6/415 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M  T ++P    ++++   C+ +  L     + +Y  +   ++++   N  ID + K   
Sbjct: 243 MRETNVVPDRYVVSSVLSACSMLEFLEGGKQIHAYVLRRGTEMDVSVVNVLIDFYTKCNR 302

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + + +KLFD+M  ++++++  +ISG  +     +A+ L+ EM   G K      +SVL+ 
Sbjct: 303 VKAGRKLFDQMVVKNIISWTTMISGYMQNSFDWEAMKLFGEMNRLGWKPDGFACTSVLTS 362

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C +     +G Q+H   +      + ++ + L+D+Y +    + A  +FD + E+N+ ++
Sbjct: 363 CGSREALEQGRQVHAYTIKANLESDEFVKNGLIDMYAKSNLLIDAKKVFDVMAEQNVISY 422

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  +    +  E L ++++M+    +PN  +F  ++   S    L  G+Q H+ ++K
Sbjct: 423 NAMIEGYSSQEKLSEALELFHEMRVRLQKPNEFTFAALITAASNLASLRHGQQFHNQLVK 482

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           +G +D   FV NALVD Y+ CGS+ EA+K F+     DV+ WNS++S +A +    +AL 
Sbjct: 483 MG-LDFCPFVTNALVDMYAKCGSIEEARKMFNSSIWRDVVCWNSMISTHAQHGEAEEALG 541

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  M     +P+  +FV  L+  S  G V  G      +   G   G+ H  + +  + 
Sbjct: 542 MFREMMKEGIQPNYVTFVAVLSACSHAGRVEDGLNHFNSMPGFGIKPGTEHY-ACVVSLL 600

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           G+   +  +    E  P   +E    +  SLL +  I   VE+  +  +  I  D
Sbjct: 601 GRSGKLFEAKEFIEKMP---IEPAAIVWRSLLSACRIAGNVELGKYAAEMAISTD 652



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 62/277 (22%), Positives = 132/277 (47%), Gaps = 5/277 (1%)

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +Q+   RP  R F   L  +     +   K IHG +   G       + + L ++  K +
Sbjct: 40  LQIPNLRPKRREFANLLQLSISRNPIIHYKIIHGQIIVSGL-QSDTFLANILINVCSKSD 98

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF-GFMVDEGIGLDEVTLSTTL 422
            ++++  VF+  P ++L   +S+++     G  ++A+ +F       G   +E  L++ +
Sbjct: 99  RVDNARVVFDKMPHKNLITWSSMVSMYSQQGYSEEALMVFVDLQRKSGEHPNEFVLASVI 158

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           +A +       G+   LH   ++SGF+ ++ V  SL+D YS+ G+IE +  VF+++    
Sbjct: 159 RACTQLGVVEKGA--QLHGFVVRSGFDQDVYVGTSLIDFYSKNGNIEEARLVFDQLSEKT 216

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
            V +T+I+ GY++ G    +L++   M +  ++PD+     VL+ C+    ++ G+ + +
Sbjct: 217 AVTWTTIIAGYTKCGRSAVSLELFAQMRETNVVPDRYVVSSVLSACSMLEFLEGGKQI-H 275

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +     G + D    + +ID   +   +    +L  Q
Sbjct: 276 AYVLRRGTEMDVSVVNVLIDFYTKCNRVKAGRKLFDQ 312



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 87/160 (54%), Gaps = 7/160 (4%)

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           +++H   I SG +S+  ++  L++  S+   ++ +  VF+K+P  N++ ++S+++ YS+ 
Sbjct: 69  KIIHGQIIVSGLQSDTFLANILINVCSKSDRVDNARVVFDKMPHKNLITWSSMVSMYSQQ 128

Query: 497 GMGREALDMLEVMIQR--GLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDAD 553
           G   EAL M+ V +QR  G  P++     V+  C   G+V++G QL    ++S  G D D
Sbjct: 129 GYSEEAL-MVFVDLQRKSGEHPNEFVLASVIRACTQLGVVEKGAQLHGFVVRS--GFDQD 185

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
               + +ID   + G +++A  +  Q       + W++++
Sbjct: 186 VYVGTSLIDFYSKNGNIEEARLVFDQL-SEKTAVTWTTII 224


>gi|357127388|ref|XP_003565363.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Brachypodium distachyon]
          Length = 814

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 193/629 (30%), Positives = 328/629 (52%), Gaps = 13/629 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPK--QALYLY 98
           N +S NR +  + +SG L++A  LF   P   RD VT+ ++I         +   A+ L+
Sbjct: 65  NAFSLNRMLSGYSRSGQLSAAHHLFLSSPPHLRDAVTWTVMIGAFASAPGARASDAVSLF 124

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI---HCRVLSLGF-GLNLYIGSPLVDL 154
            +M+  G+     T ++VL++   +G     I I   H   L LG    N+ + + L+D 
Sbjct: 125 RDMLREGVAPDRVTVATVLNLPPASGGTAAAIIIASLHPFALKLGLLHSNVVVCNTLLDA 184

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y + G    A  +F E+P R+  T+N M+    +     E L ++  M+ +G+     +F
Sbjct: 185 YCKHGLLAAARRVFQEMPHRDSVTYNAMMMGCSKEGSHAEALDLFAAMRRKGLAATRFTF 244

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++   +    L  G+Q+H  V +      N+FV N+L+DFYS C  L E KK F  + 
Sbjct: 245 STVLTVATGVGDLCLGRQVHGLVARA--TSSNVFVNNSLLDFYSKCDCLDEMKKLFHEMI 302

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             D +S+N +++ YA        L LF  MQ          +   L+ A    ++  GKQ
Sbjct: 303 ERDNVSYNVMIAGYAWNRCASIVLRLFREMQSLSFDRQALPYASLLSVAGSVPHIGIGKQ 362

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           IH  +  LG     + V +AL DMY KC +++++   F +   ++     +++T  + +G
Sbjct: 363 IHAQLVLLGLSSEDL-VGNALIDMYSKCGMLDAAKTNFINKNDKTGVSWTAMITGCVQNG 421

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             ++A+++F  M   G+  D  T S+T+KA S  A   LG  R LH   I+SG  S++  
Sbjct: 422 QQEEALQLFCGMRRAGLSPDRATFSSTIKASSNLAMIGLG--RQLHSYLIRSGHMSSVFS 479

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+D Y++CG ++ + Q F+++P  N + + ++++ Y+  G  + A+ M E M+  G 
Sbjct: 480 GSALLDMYTKCGCLDEALQTFDEMPERNSISWNAVISAYAHYGQAKNAIKMFEGMLCYGF 539

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD VTFL VL+ C+H+G+ +E    F  M+  YGI   ++HYSC+ID LGR G  DK +
Sbjct: 540 KPDSVTFLSVLSACSHNGLAEECMKYFELMEYEYGISPWKEHYSCVIDTLGRVGRFDKVQ 599

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E+L + P   D ++WSS+L SCR HGN+ + R  A  L  +   D   Y  +SN +++ G
Sbjct: 600 EMLGEMPFEDDPIIWSSILHSCRTHGNQDLARVAAEKLFSMGSTDATPYVILSNIFAKAG 659

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
           ++E +  +++    R L ++ G+S +EV 
Sbjct: 660 KWEDAAGVKKIMRDRGLRKETGYSWVEVK 688


>gi|326507410|dbj|BAK03098.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 698

 Score =  308 bits (790), Expect = 5e-81,   Method: Compositional matrix adjust.
 Identities = 207/670 (30%), Positives = 340/670 (50%), Gaps = 27/670 (4%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQ---LNIYSSNRTIDDFVKSGHLNSAK 64
           P +R+ +    T  ++    ++LL      P P    L  YS        V S  L +A+
Sbjct: 4   PHLRSSSRHHLTIAAVAKSHATLLKSGVTSPTPWNQLLTAYS--------VSSPGLAAAR 55

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           +LFDE+P  D  ++N L++          A  L   M   G+  +     S L   +  G
Sbjct: 56  RLFDEIPRLDAASWNSLLAAHVSIGAHPAACRLLRAMHERGLAANTFALGSALRSAAAMG 115

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G Q+H   +  G   N++  + L+ +Y + G +  A  LFD +PERN  +WN ++ 
Sbjct: 116 CSALGTQLHSLAVKAGLADNVFSATALLHMYAKCGRTRDACRLFDGMPERNTVSWNALVA 175

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM--VRGCSIGMLLDEGKQLHSHVIKLGW 242
            + E  +    ++++ +M+ EG  P+  +F  +  V   S   L+    QLH  ++K G 
Sbjct: 176 GYVESGKVAPAVQLFVEMEREGFLPDEATFAALLTVVNDSTCFLM---HQLHGKIVKYG- 231

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYADYDLIFDALELF 301
             + + V NA +  YS CG+L  +++ FD I    D+ISWN+++  YA + +  +A+  F
Sbjct: 232 SALGLIVLNAAITAYSQCGALANSRRIFDEIGDRSDLISWNAMLGAYATHGMEHEAMRFF 291

Query: 302 FRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
             M      +P + SF   ++  +   + + G  IHG V+K GF+ G  HV +AL  MY 
Sbjct: 292 ASMMRASGVQPDMYSFTSIISACAEHRD-HGGTVIHGLVSKNGFE-GVTHVCNALIAMYT 349

Query: 361 KCN---VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           + +   ++E +   F+S   +     NS++T     G   DA+  F  M  E I  DE  
Sbjct: 350 RFSENCMMEDAYKCFDSLLLKDTVSWNSMLTGYSQHGLSADALRFFRCMQSENITTDEYA 409

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
            S  L++ S  A   LG  R +H   I+SGF SN  VS SL+  YS+ G ++ + + FE+
Sbjct: 410 FSAALRSCSDLALLRLG--RQIHGLVIRSGFASNNFVSSSLIFMYSKSGILDDAMKSFEE 467

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
               + V + S+M GY+++G  +    +   M++  +  D +TF+ ++  C+H+G+V EG
Sbjct: 468 ADKSSSVPWNSMMFGYAQHGKAQAVRSLFNQMLELKVPLDHITFVGLITACSHAGLVDEG 527

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
             + N+M+S YGI    +HY+C ID+ GRAG LDKA+EL+   P   D M+W +LL +CR
Sbjct: 528 SEILNTMESRYGIPLRMEHYACGIDLYGRAGQLDKAKELIDSMPFEPDAMVWMTLLGACR 587

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           VHGN  +   VA+ L+E EP   + Y  +SN YS +G +     +++    + L++  G 
Sbjct: 588 VHGNMELASDVASHLLEAEPRQHSTYVLLSNMYSGLGMWSDRAIVQKEMKNKGLSKVPGW 647

Query: 658 SLIEV-NSCH 666
           S IEV N  H
Sbjct: 648 SWIEVKNEVH 657


>gi|357502643|ref|XP_003621610.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355496625|gb|AES77828.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 881

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 179/622 (28%), Positives = 324/622 (52%), Gaps = 8/622 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +    +D +     L+ A  +F EMP R+ V ++ +I+G  +     + L LY  M+
Sbjct: 204 DVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVML 263

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  S +TF+S    C+    +  G Q+H   L   FG +  +G+  +D+Y +    V
Sbjct: 264 DEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGYDNIVGTATLDMYAKCDRMV 323

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F+  P     + N ++  +    +  E L ++  ++   ++ + +S    +  CS
Sbjct: 324 DARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACS 383

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                 EG QLH   +K G +D NI VAN ++D Y+ CG+L+EA   FD + + D +SWN
Sbjct: 384 AIKGYLEGIQLHGLAVKCG-LDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWN 442

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK- 341
           +I++ +   + + + L LF  M      P   +F   +   +    + +G ++HG V K 
Sbjct: 443 AIIAAHEQNEHVEETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKS 502

Query: 342 -LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            +G D     V SA+ DMY KC ++  +  + E    R+    NS+++        ++A+
Sbjct: 503 GMGLDW---FVGSAIIDMYCKCGMLVEAEKIHERLEERTTVSWNSIISGFSSEKQGENAL 559

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
             F  M+  G+  D  T +T L   +  A+  LG  + +H   +K    S++ ++ +++D
Sbjct: 560 SYFSRMLQVGVIPDNFTYATVLDICANLATVELG--KQIHGQILKLQLHSDVYIASTIVD 617

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+CG+++ S  +FEK P  + V +++++  Y+ +G+G +A+ + E M  + + P+   
Sbjct: 618 MYSKCGNMQDSRIMFEKAPKRDYVTWSAMICAYAYHGLGEDAIKLFEEMQLQNVKPNHTI 677

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ VL  C H G V +G   F  M+S YG+D   +HYSCM+D+LGR+G +++A EL++  
Sbjct: 678 FISVLRACAHMGFVDKGLHYFREMRSHYGLDPQMEHYSCMVDLLGRSGQVNEALELIESM 737

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D ++W +LL  CR+ GN  +  + AN L++L+P D + Y  +SN Y+  G +    
Sbjct: 738 PFEADDVIWRTLLGICRLQGNVEVAEKAANSLLQLDPQDSSAYVLLSNVYAIAGMWGEVA 797

Query: 641 QIRETALARKLTRDIGHSLIEV 662
           +IR      KL ++ G S I+V
Sbjct: 798 KIRSFMKNYKLKKEPGCSWIQV 819



 Score =  234 bits (598), Expect = 8e-59,   Method: Compositional matrix adjust.
 Identities = 160/620 (25%), Positives = 301/620 (48%), Gaps = 39/620 (6%)

Query: 19  TCTSIVP--LSSSLLLDSYCQ------------PNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           T T  VP    S+ LL  YC+              PQ ++ S N  I  +   G++  A+
Sbjct: 65  TVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKMPQRDVISWNTMIFGYAGVGNMEFAQ 124

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            LFD MP RD+V++N ++S   +    ++++ ++ +M    I+   +TF+ VL  C+   
Sbjct: 125 FLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFTKMRLLEIQHDYATFAVVLKACTGIE 184

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
            Y  G+Q+HC  + +GF  ++  G+ LVD+Y        A ++F E+PERN   W+ ++ 
Sbjct: 185 DYGLGLQVHCLAIQMGFDSDVVTGTALVDMYSTCKKLDHAFNIFCEMPERNSVCWSAVIA 244

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            +    R  E L++Y  M  EG+  +  +F    R C+     + G QLH++ +K  +  
Sbjct: 245 GYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAFRSCAGLSAFELGTQLHAYALKTNFGY 304

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            NI V  A +D Y+ C  +++A+K F+  P     S N+++  YA  D + +ALE+F  +
Sbjct: 305 DNI-VGTATLDMYAKCDRMVDARKVFNTFPNPTRQSHNALIVGYARQDQVLEALEIFRSL 363

Query: 305 QLCRKRPSIRSFVEF--------LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           Q        +S+++F        L   S       G Q+HG   K G D  ++ V + + 
Sbjct: 364 Q--------KSYLDFDEISLSGALTACSAIKGYLEGIQLHGLAVKCGLDF-NICVANTIL 414

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           DMY KC  +  +  +F+    +     N+++ +   + ++++ + +F  M+   +  D+ 
Sbjct: 415 DMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVEETLALFVSMLRSTMEPDDY 474

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T  + +KA +   + N G    +H   IKSG   +  V  +++D Y +CG +  + ++ E
Sbjct: 475 TFGSVVKACAGKKALNYG--MEVHGRVIKSGMGLDWFVGSAIIDMYCKCGMLVEAEKIHE 532

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
           ++     V + SI++G+S    G  AL     M+Q G+IPD  T+  VL  C +   V+ 
Sbjct: 533 RLEERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIPDNFTYATVLDICANLATVEL 592

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G+ +   +  +  + +D    S ++DM  + G +  +  + ++ P   D + WS+++ + 
Sbjct: 593 GKQIHGQILKL-QLHSDVYIASTIVDMYSKCGNMQDSRIMFEKAP-KRDYVTWSAMICAY 650

Query: 597 RVHGNEIIGRRVANILMELE 616
             HG   +G     +  E++
Sbjct: 651 AYHG---LGEDAIKLFEEMQ 667



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 134/578 (23%), Positives = 259/578 (44%), Gaps = 42/578 (7%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TFS +   CSN      G Q H ++   GF   +++ + L+  Y +      A ++FD++
Sbjct: 40  TFSHIFQKCSNLKAINPGKQAHAQITVTGFVPTVFVSNCLLQFYCKCLNLNYAFNVFDKM 99

Query: 172 PERNLATWNLMLRAFCEL-----------SRPD--------------------EVLRMYN 200
           P+R++ +WN M+  +  +           S P+                    + + ++ 
Sbjct: 100 PQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEIFT 159

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           KM+   ++ +  +F  +++ C+       G Q+H   I++G+ D ++    ALVD YS C
Sbjct: 160 KMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGF-DSDVVTGTALVDMYSTC 218

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
             L  A   F  +P  + + W+++++ Y   D   + L+L+  M       S  +F    
Sbjct: 219 KKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFASAF 278

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
              +       G Q+H Y  K  F + ++ V +A  DMY KC+ +  +  VF + P  + 
Sbjct: 279 RSCAGLSAFELGTQLHAYALKTNFGYDNI-VGTATLDMYAKCDRMVDARKVFNTFPNPTR 337

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
           +  N+L+        + +A+E+F  +    +  DE++LS  L A S       G    LH
Sbjct: 338 QSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEGI--QLH 395

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             A+K G + NI V+ +++D Y++CG +  +  +F+ +   + V + +I+  + +N    
Sbjct: 396 GLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDMEIKDAVSWNAIIAAHEQNEHVE 455

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSC 559
           E L +   M++  + PD  TF  V+  C     +  G  V    +KS  G+D      S 
Sbjct: 456 ETLALFVSMLRSTMEPDDYTFGSVVKACAGKKALNYGMEVHGRVIKSGMGLDWFVG--SA 513

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR--SCRVHGNEIIGRRVANILMELEP 617
           +IDM  + G+L +AE++ ++       + W+S++   S    G   +      + + + P
Sbjct: 514 IIDMYCKCGMLVEAEKIHERLE-ERTTVSWNSIISGFSSEKQGENALSYFSRMLQVGVIP 572

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
            +F  Y+ V +  + +   E+  QI    L  +L  D+
Sbjct: 573 DNF-TYATVLDICANLATVELGKQIHGQILKLQLHSDV 609



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/448 (23%), Positives = 209/448 (46%), Gaps = 39/448 (8%)

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           L+F ++ + CS    ++ GKQ H+ +   G+V   +FV+N L+ FY  C +L  A   FD
Sbjct: 39  LTFSHIFQKCSNLKAINPGKQAHAQITVTGFVPT-VFVSNCLLQFYCKCLNLNYAFNVFD 97

Query: 272 FIPVDDVISWNSIVSIYADY------DLIFDAL-------------------------EL 300
            +P  DVISWN+++  YA          +FD++                         E+
Sbjct: 98  KMPQRDVISWNTMIFGYAGVGNMEFAQFLFDSMPERDVVSWNSMLSCYLQNGFHRKSIEI 157

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F +M+L   +    +F   L   +   +   G Q+H    ++GFD   V   +AL DMY 
Sbjct: 158 FTKMRLLEIQHDYATFAVVLKACTGIEDYGLGLQVHCLAIQMGFD-SDVVTGTALVDMYS 216

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
            C  ++ +  +F   P R+  C ++++   + +    + ++++  M+DEG+G+ + T ++
Sbjct: 217 TCKKLDHAFNIFCEMPERNSVCWSAVIAGYVRNDRFTEGLKLYKVMLDEGMGVSQATFAS 276

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
             ++ +  ++  LG+   LH  A+K+ F  +  V  + +D Y++C  +  + +VF   P+
Sbjct: 277 AFRSCAGLSAFELGT--QLHAYALKTNFGYDNIVGTATLDMYAKCDRMVDARKVFNTFPN 334

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           P      +++ GY+R     EAL++   + +  L  D+++    L  C+      EG + 
Sbjct: 335 PTRQSHNALIVGYARQDQVLEALEIFRSLQKSYLDFDEISLSGALTACSAIKGYLEG-IQ 393

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV-- 598
            + +    G+D +    + ++DM  + G L +A  +        D + W++++ +     
Sbjct: 394 LHGLAVKCGLDFNICVANTILDMYAKCGALMEACLIFDDME-IKDAVSWNAIIAAHEQNE 452

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQV 626
           H  E +   V+ +   +EP D+   S V
Sbjct: 453 HVEETLALFVSMLRSTMEPDDYTFGSVV 480


>gi|357509307|ref|XP_003624942.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355499957|gb|AES81160.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1092

 Score =  308 bits (789), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 182/629 (28%), Positives = 338/629 (53%), Gaps = 15/629 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI  S + I+ +V  G ++ ++  FD +  +++ ++N +IS   +F    +A+   +++ 
Sbjct: 53  NIVLSTKLINLYVTHGDISLSRSTFDYIHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLF 112

Query: 103 SH----GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           S      ++    TF  +L  C +     +G ++HC V  +GF  ++++ + LV LY R 
Sbjct: 113 SMCGGGHLRPDFYTFPPILKACVS---LVDGKKVHCCVFKMGFEDDVFVAASLVHLYSRY 169

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  +F ++P +++ +WN M+  FC+       L + N+MK EGV+ + ++   ++
Sbjct: 170 GVLDVAHKVFVDMPVKDVGSWNAMISGFCQNGNAAGALGVLNRMKGEGVKMDTITVASIL 229

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+    +  G  +H HV+K G +D ++FV+NAL++ YS  G L +A+  FD + V D+
Sbjct: 230 PVCAQSDDVINGVLIHLHVLKHG-LDSDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDL 288

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWNSI++ Y   +    AL  F  MQL   RP + + V   +  S+  +    + I G+
Sbjct: 289 VSWNSIIAAYEQNNDPSTALRFFKGMQLGGIRPDLLTVVSLTSIFSQLSDQRISRSILGF 348

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V +  +    V + +AL +MY K   +  +  VF+  P +     N+L+T    +G   +
Sbjct: 349 VIRREWLDKDVVIGNALVNMYAKLGYMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASE 408

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVS 455
           A++ +  M +     D +    T  ++ + A +++G+ +    +H   IK+    ++ V+
Sbjct: 409 AIDAYNMMEE---CRDTIPNQGTWVSI-IPAYSHVGALQQGMKIHAKLIKNSLYLDVFVA 464

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             L+D Y +CG +E +  +F +IP    V + +I+     +G G EAL + + M+   + 
Sbjct: 465 TCLIDLYGKCGRLEDAMSLFYEIPRDTSVPWNAIIASLGIHGRGEEALQLFKDMLAERVK 524

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
            D +TF+ +L+ C+HSG+V EGQ  F+ M+  YGI    +HY CM+D+LGRAG L+KA E
Sbjct: 525 ADHITFVSLLSACSHSGLVDEGQKCFDIMQKEYGIKPSLKHYGCMVDLLGRAGYLEKAYE 584

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L++  P   D  +W +LL +C+++GN  +G   ++ L+E++  +   Y  +SN Y+   +
Sbjct: 585 LVRNMPIQPDASIWGALLSACKIYGNAELGTLASDRLLEVDSENVGYYVLLSNIYANTEK 644

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +E  +++R  A  R L +  G S + V S
Sbjct: 645 WEGVIKVRSLARDRGLRKTPGWSSVVVGS 673



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 125/497 (25%), Positives = 252/497 (50%), Gaps = 20/497 (4%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           + F+++ + C N        ++H  +L  G   N+ + + L++LY+  G    +   FD 
Sbjct: 23  ADFNALFNSCVNVNATK---KLHALLLVFGKSQNIVLSTKLINLYVTHGDISLSRSTFDY 79

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKM----KAEGVEPNGLSFCYMVRGCSIGML 226
           + ++N+ +WN ++ A+    +  E +   N++        + P+  +F  +++ C   + 
Sbjct: 80  IHKKNIFSWNSIISAYVRFGKYHEAMNCVNQLFSMCGGGHLRPDFYTFPPILKAC---VS 136

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +GK++H  V K+G+ D ++FVA +LV  YS  G L  A K F  +PV DV SWN+++S
Sbjct: 137 LVDGKKVHCCVFKMGFED-DVFVAASLVHLYSRYGVLDVAHKVFVDMPVKDVGSWNAMIS 195

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            +        AL +  RM+    +    +    L   +++ +V  G  IH +V K G D 
Sbjct: 196 GFCQNGNAAGALGVLNRMKGEGVKMDTITVASILPVCAQSDDVINGVLIHLHVLKHGLD- 254

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V +AL +MY K   ++ +  VF+    R L   NS++ +   + +   A+  F  M
Sbjct: 255 SDVFVSNALINMYSKFGRLQDAQMVFDQMEVRDLVSWNSIIAAYEQNNDPSTALRFFKGM 314

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              GI  D +T+  +L ++    S    S  +L     +   + ++ +  +L++ Y++ G
Sbjct: 315 QLGGIRPDLLTV-VSLTSIFSQLSDQRISRSILGFVIRREWLDKDVVIGNALVNMYAKLG 373

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVL 525
           ++  +H VF+++P  + + + +++ GY++NG+  EA+D   +M + R  IP++ T++ ++
Sbjct: 374 YMNCAHTVFDQLPRKDTISWNTLVTGYTQNGLASEAIDAYNMMEECRDTIPNQGTWVSII 433

Query: 526 AGCNHSGMVKEGQLVFNSM--KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
              +H G +++G  +   +   S+Y    D    +C+ID+ G+ G L+ A  L  + P  
Sbjct: 434 PAYSHVGALQQGMKIHAKLIKNSLY---LDVFVATCLIDLYGKCGRLEDAMSLFYEIP-R 489

Query: 584 GDCMMWSSLLRSCRVHG 600
              + W++++ S  +HG
Sbjct: 490 DTSVPWNAIIASLGIHG 506


>gi|302756099|ref|XP_002961473.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
 gi|300170132|gb|EFJ36733.1| hypothetical protein SELMODRAFT_77426 [Selaginella moellendorffii]
          Length = 643

 Score =  308 bits (789), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 185/594 (31%), Positives = 323/594 (54%), Gaps = 10/594 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  N  +  + K G +  A+++FD +  R++ ++ +++       H ++AL L+ E+ S 
Sbjct: 48  YLGNLLVQAYGKCGSVRDAREVFDRIQRRNIFSWTIMLGAYADNGHGREALGLFREIQSR 107

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G+     T  S L  C+ AG   EG  IH    SLG+   + + + LV +Y + G    A
Sbjct: 108 GMAIDNVTLVSALKACAVAGDLEEGRGIHASARSLGYESEIIVATALVSMYGKCGHLEEA 167

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F  L ERN  +WN ML A+ +    +E +R+Y  M  EG++P+  +F  ++ G    
Sbjct: 168 KAVFATLVERNRVSWNAMLAAYAQNGHCEEAVRLYRLMCFEGIKPDATTFVSVLDGWK-- 225

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              + G ++H  V++ G+   N  +ANALV  Y + G + +A+  FD I    V+SWN++
Sbjct: 226 GEGEHGTRIHDQVLESGF-GSNTTLANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAM 284

Query: 285 VSIYADYDLIFDALELFFRMQLCRK---RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++ YA       A++LF++M   R+    P+  +FV  L   + TG +  G++IH  V  
Sbjct: 285 LTAYAQNGRYGKAVDLFWKMDEMRRALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVAS 344

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LG    ++ V  AL +MY +C  +  + +VF+S P ++L   N L+ S    G+ K+A+ 
Sbjct: 345 LGL-LSTLSVGGALINMYSECGNLVLAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALG 403

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +   M  EG+  D+ T  + L A   SAS  L   + +H     SG E + A+  +L++ 
Sbjct: 404 VHQKMELEGLKPDKFTFISVLHA--CSASEALAEGKAIHALIAASGLERDEAIGTALINL 461

Query: 462 YSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           Y +CG +E +  VF  + S  N+V + S++      G   + ++++ +M   G++PD++T
Sbjct: 462 YGKCGSLEQARNVFLDMKSRRNLVTWNSMLAAACTKGGLEDCVEIIHMMGLEGIMPDELT 521

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL  C+H G +++G  +F S    YGI  + +HY C++D+LGR G L++A+E+L + 
Sbjct: 522 FLSVLFACSHGGSIQQGLDLFLSAGVDYGIATNTKHYVCVVDILGRVGRLEEAQEVLNRM 581

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           P   + + W +LL +CR+H +   GRR A+ ++EL+P + A Y+ +S  +S  G
Sbjct: 582 PFQANDVAWMTLLGACRIHRDFEQGRRAADYVIELDPQNAAPYALLSTMFSVAG 635



 Score =  215 bits (547), Expect = 6e-53,   Method: Compositional matrix adjust.
 Identities = 135/492 (27%), Positives = 255/492 (51%), Gaps = 6/492 (1%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           S+ +S+L  C++A   T   Q    +   GFG + Y+G+ LV  Y + G    A ++FD 
Sbjct: 13  SSHASILRDCASARDLTAAKQAQWEIARDGFGGDRYLGNLLVQAYGKCGSVRDAREVFDR 72

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  RN+ +W +ML A+ +     E L ++ ++++ G+  + ++    ++ C++   L+EG
Sbjct: 73  IQRRNIFSWTIMLGAYADNGHGREALGLFREIQSRGMAIDNVTLVSALKACAVAGDLEEG 132

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           + +H+    LG+ +  I VA ALV  Y  CG L EAK  F  +   + +SWN++++ YA 
Sbjct: 133 RGIHASARSLGY-ESEIIVATALVSMYGKCGHLEEAKAVFATLVERNRVSWNAMLAAYAQ 191

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +A+ L+  M     +P   +FV  L+     G    G +IH  V + GF   +  
Sbjct: 192 NGHCEEAVRLYRLMCFEGIKPDATTFVSVLD--GWKGEGEHGTRIHDQVLESGFGSNTT- 248

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           + +AL  MYG    ++ +  VF+    +++   N+++T+   +G    AV++F  M +  
Sbjct: 249 LANALVSMYGSGGRVDDARYVFDGIAEKTVVSWNAMLTAYAQNGRYGKAVDLFWKMDEMR 308

Query: 411 IGLDEVTLSTTLKAL-SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
             L E    T +  L + +A+  L + R +H      G  S ++V  +L++ YS CG++ 
Sbjct: 309 RALVEPNSVTFVNLLVACAATGFLEAGRKIHAEVASLGLLSTLSVGGALINMYSECGNLV 368

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           L+  VF+ +P  N+V +  ++  Y+ +G G+EAL + + M   GL PDK TF+ VL  C+
Sbjct: 369 LAKSVFDSVPHKNLVSWNVLIGSYAGDGDGKEALGVHQKMELEGLKPDKFTFISVLHACS 428

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            S  + EG+ + +++ +  G++ D    + +I++ G+ G L++A  +        + + W
Sbjct: 429 ASEALAEGKAI-HALIAASGLERDEAIGTALINLYGKCGSLEQARNVFLDMKSRRNLVTW 487

Query: 590 SSLLRSCRVHGN 601
           +S+L +    G 
Sbjct: 488 NSMLAAACTKGG 499


>gi|357497455|ref|XP_003619016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355494031|gb|AES75234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 999

 Score =  308 bits (789), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 186/626 (29%), Positives = 331/626 (52%), Gaps = 39/626 (6%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  N  +  + +SG+L+SA+++F  M  RD V+YN LISG  +  +  +AL L+ +M   
Sbjct: 287 YVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLD 346

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
             K    T +S+LS C++ G    G Q H   +  G   ++ +   L+DLY++      A
Sbjct: 347 CQKPDCVTVASLLSACASVGALPNGKQFHSYAIKAGMTSDIVVEGSLLDLYVKCSDIKTA 406

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            + F                 + +L   ++  +++ +M+ EG+ PN  ++  +++ C+  
Sbjct: 407 HEFF---------------LCYGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTL 451

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              D G+Q+H+ V+K G+   N++V++ L+D Y+  G L  A K F  +  +DV+SW ++
Sbjct: 452 GATDLGEQIHTQVLKTGF-QFNVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAM 510

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y  +D   +AL LF  MQ    +     F   ++  +    +  G+QIH      G+
Sbjct: 511 IAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQALDQGRQIHAQSCLSGY 570

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               + + +AL  +Y +C  +  + A F+    +     NSL++    SG  ++A+ +F 
Sbjct: 571 S-DDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFA 629

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDA 461
            M   G+ ++  T  +     +VSA+AN+ + R+   +H    K+G++S   VS +L+  
Sbjct: 630 QMNKAGLEINSFTFGS-----AVSAAANIANVRIGKQIHGMIRKTGYDSETEVSNALITL 684

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG I+              + + S++ GYS++G G EAL + E M Q  ++P+ VTF
Sbjct: 685 YAKCGTID-------------DISWNSMITGYSQHGCGFEALKLFEDMKQLDVLPNHVTF 731

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL+ C+H G+V EG   F SM   + +    +HY+C++D+LGR+G+L +A+  +++ P
Sbjct: 732 VGVLSACSHVGLVDEGISYFRSMSEAHNLVPKPEHYACVVDLLGRSGLLSRAKRFVEEMP 791

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D M+W +LL +C VH N  IG   A+ L+ELEP D A Y  VSN Y+  G+++   +
Sbjct: 792 IQPDAMVWRTLLSACNVHKNIDIGEFAASHLLELEPKDSATYVLVSNMYAVSGKWDCRDR 851

Query: 642 IRETALARKLTRDIGHSLIEV-NSCH 666
            R+    R + ++ G S +EV NS H
Sbjct: 852 TRQMMKDRGVKKEPGRSWVEVDNSVH 877



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 133/553 (24%), Positives = 264/553 (47%), Gaps = 48/553 (8%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K+G L+SAKK+F+ + ARD V++  +ISG  +  + ++A+ L+ ++V     
Sbjct: 203 NPLIDLYFKNGFLSSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAMLLFCQIV----- 257

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
                    LS C+   F+  G Q+H  VL  GF    Y+ + LV LY R G    A  +
Sbjct: 258 ---------LSACTKVEFFEFGKQLHGLVLKQGFSSETYVCNALVTLYSRSGNLSSAEQI 308

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F  + +R+  ++N ++    +    +  L ++ KM  +  +P+ ++   ++  C+    L
Sbjct: 309 FHCMSQRDRVSYNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGAL 368

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             GKQ HS+ IK G +  +I V  +L+D Y  C  +  A + F                 
Sbjct: 369 PNGKQFHSYAIKAG-MTSDIVVEGSLLDLYVKCSDIKTAHEFF---------------LC 412

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y   D +  + ++F +MQ+    P+  ++   L   +  G    G+QIH  V K GF   
Sbjct: 413 YGQLDNLNKSFQIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQF- 471

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V+V S L DMY K   ++ ++ +F       +    +++          +A+ +F  M 
Sbjct: 472 NVYVSSVLIDMYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQ 531

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           D+GI  D +  ++ + A +   + + G  R +H  +  SG+  ++++  +L+  Y+RCG 
Sbjct: 532 DQGIKSDNIGFASAISACAGIQALDQG--RQIHAQSCLSGYSDDLSIGNALVSLYARCGK 589

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +  ++  F++I + + V + S+++G++++G   EAL++   M + GL  +  TF   ++ 
Sbjct: 590 VREAYAAFDQIYAKDNVSWNSLVSGFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSA 649

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
             +   V+ G+ +   ++   G D++ +  + +I +  + G +D               +
Sbjct: 650 AANIANVRIGKQIHGMIRKT-GYDSETEVSNALITLYAKCGTIDD--------------I 694

Query: 588 MWSSLLRSCRVHG 600
            W+S++     HG
Sbjct: 695 SWNSMITGYSQHG 707



 Score =  195 bits (495), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 148/553 (26%), Positives = 266/553 (48%), Gaps = 38/553 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y   + ID ++  G LN A  +FDEMP R +  +N + +     R   +   L+  M+
Sbjct: 96  SFYDGLKLIDFYLAFGDLNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRML 155

Query: 103 SHGIKESASTFSSVLSVCS-NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +  ++     F+ VL  CS NA  +    QIH + ++ GF  + +I +PL+DLY + G  
Sbjct: 156 TKNVEFDERIFAVVLRGCSGNAVSFRFVEQIHAKTITSGFESSTFICNPLIDLYFKNGFL 215

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV-RG 220
             A  +F+ L  R+  +W  M+    +    +E +               L FC +V   
Sbjct: 216 SSAKKVFENLKARDSVSWVAMISGLSQNGYEEEAM---------------LLFCQIVLSA 260

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+     + GKQLH  V+K G+     +V NALV  YS  G+L  A++ F  +   D +S
Sbjct: 261 CTKVEFFEFGKQLHGLVLKQGF-SSETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVS 319

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           +NS++S  A    I  AL LF +M L  ++P   +    L+  +  G +  GKQ H Y  
Sbjct: 320 YNSLISGLAQQGYINRALALFKKMNLDCQKPDCVTVASLLSACASVGALPNGKQFHSYAI 379

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K G     V V+ +L D+Y KC+ I+++   F         C   L        N+  + 
Sbjct: 380 KAGMTSDIV-VEGSLLDLYVKCSDIKTAHEFF--------LCYGQL-------DNLNKSF 423

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  M  EGI  ++ T  + LK  +   + +LG    +H   +K+GF+ N+ VS  L+D
Sbjct: 424 QIFTQMQIEGIVPNQFTYPSILKTCTTLGATDLG--EQIHTQVLKTGFQFNVYVSSVLID 481

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++ G ++ + ++F ++   +VV +T+++ GY+++    EAL++ + M  +G+  D + 
Sbjct: 482 MYAKHGKLDHALKIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIG 541

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F   ++ C     + +G+ + ++   + G   D    + ++ +  R G + +A     Q 
Sbjct: 542 FASAISACAGIQALDQGRQI-HAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQI 600

Query: 581 PGGGDCMMWSSLL 593
               D + W+SL+
Sbjct: 601 Y-AKDNVSWNSLV 612



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 132/501 (26%), Positives = 230/501 (45%), Gaps = 57/501 (11%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M  HG++ ++ TF  +L  C N+  + +G++                   L+D Y+  G 
Sbjct: 72  MEQHGVRANSQTFLWLLEGCLNSRSFYDGLK-------------------LIDFYLAFGD 112

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A+++FDE+P R+L+ WN +   F        V  ++ +M  + VE +   F  ++RG
Sbjct: 113 LNCAVNVFDEMPIRSLSCWNRIFNTFIAERLMGRVPGLFRRMLTKNVEFDERIFAVVLRG 172

Query: 221 CSIGML-LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           CS   +     +Q+H+  I  G+ + + F+ N L+D Y   G L  AKK F+ +   D +
Sbjct: 173 CSGNAVSFRFVEQIHAKTITSGF-ESSTFICNPLIDLYFKNGFLSSAKKVFENLKARDSV 231

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +++S  +      +A+ LF     C+   S  + VEF           FGKQ+HG V
Sbjct: 232 SWVAMISGLSQNGYEEEAMLLF-----CQIVLSACTKVEFFE---------FGKQLHGLV 277

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF     +V +AL  +Y +   + S+  +F     R     NSL++ L   G I  A
Sbjct: 278 LKQGFS-SETYVCNALVTLYSRSGNLSSAEQIFHCMSQRDRVSYNSLISGLAQQGYINRA 336

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKA-LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           + +F  M  +    D VT+++ L A  SV A   L + +  H  AIK+G  S+I V  SL
Sbjct: 337 LALFKKMNLDCQKPDCVTVASLLSACASVGA---LPNGKQFHSYAIKAGMTSDIVVEGSL 393

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y +C  I+ +H+ F        +C+  + N         ++  +   M   G++P++
Sbjct: 394 LDLYVKCSDIKTAHEFF--------LCYGQLDN-------LNKSFQIFTQMQIEGIVPNQ 438

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            T+  +L  C   G    G+ +   +    G   +    S +IDM  + G LD A ++ +
Sbjct: 439 FTYPSILKTCTTLGATDLGEQIHTQVLKT-GFQFNVYVSSVLIDMYAKHGKLDHALKIFR 497

Query: 579 QTPGGGDCMMWSSLLRSCRVH 599
           +     D + W++++     H
Sbjct: 498 RLK-ENDVVSWTAMIAGYTQH 517



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 95/325 (29%), Positives = 160/325 (49%), Gaps = 15/325 (4%)

Query: 6   LLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           ++P   T  ++  TCT++        +     +   Q N+Y S+  ID + K G L+ A 
Sbjct: 434 IVPNQFTYPSILKTCTTLGATDLGEQIHTQVLKTGFQFNVYVSSVLIDMYAKHGKLDHAL 493

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K+F  +   D+V++  +I+G  +     +AL L+ EM   GIK     F+S +S C+   
Sbjct: 494 KIFRRLKENDVVSWTAMIAGYTQHDKFTEALNLFKEMQDQGIKSDNIGFASAISACAGIQ 553

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
              +G QIH +    G+  +L IG+ LV LY R G    A   FD++  ++  +WN ++ 
Sbjct: 554 ALDQGRQIHAQSCLSGYSDDLSIGNALVSLYARCGKVREAYAAFDQIYAKDNVSWNSLVS 613

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            F +    +E L ++ +M   G+E N  +F   V   +    +  GKQ+H  + K G+ D
Sbjct: 614 GFAQSGYFEEALNIFAQMNKAGLEINSFTFGSAVSAAANIANVRIGKQIHGMIRKTGY-D 672

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
               V+NAL+  Y+ CG++             D ISWNS+++ Y+ +   F+AL+LF  M
Sbjct: 673 SETEVSNALITLYAKCGTI-------------DDISWNSMITGYSQHGCGFEALKLFEDM 719

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNV 329
           +     P+  +FV  L+  S  G V
Sbjct: 720 KQLDVLPNHVTFVGVLSACSHVGLV 744


>gi|449510623|ref|XP_004163716.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 181/615 (29%), Positives = 335/615 (54%), Gaps = 8/615 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K+      + +FDEM  +++V++  L+SG  +     + ++L ++M   G+  + 
Sbjct: 146 VDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNG 205

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF++VL   ++      G+Q+H  ++  GF    ++ + L+ +Y++      A  +FD 
Sbjct: 206 FTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDS 265

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  R+  TWN+M+  +  +    E  +M+++M+  GV+ +   FC  ++ CS    L+  
Sbjct: 266 MVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFT 325

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYA 289
           KQLH  V+K G+ +    +  AL+  YS C S+ EA K F       +V++W +++  + 
Sbjct: 326 KQLHCGVVKNGY-EFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFV 384

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
             +    A++LF +M     RP+  ++   L  A +  ++    Q+H  + K  ++    
Sbjct: 385 QNNNNKKAVDLFCQMSREGVRPNHFTYSTVL--AGKPSSLL--SQLHAQIIKAYYEKVP- 439

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V +AL D Y K   +  S  VF S P + +   ++++T L  + + + A+E+F  +V E
Sbjct: 440 SVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKE 499

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+  +E T S+ + A S SA A +   + +H  A+KSG  + + VS +L+  YS+ G+IE
Sbjct: 500 GVKPNEYTFSSVINACSSSA-ATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIE 558

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            + +VF +    ++V + S++ GY ++G  ++AL++ ++M  +GL  D VTF+ VL  C 
Sbjct: 559 SAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACT 618

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+G+V+EG+  FN M   Y ID   +HYSCM+D+  RAG+ DKA +++   P      +W
Sbjct: 619 HAGLVEEGEKYFNIMIKDYHIDKKXEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIW 678

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +CRVH N  +G+  A  L+ L+P D   Y  +SN ++  G +E    +R+    R
Sbjct: 679 RTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDER 738

Query: 650 KLTRDIGHSLIEVNS 664
           K+ ++ G S IE+ +
Sbjct: 739 KVKKEAGCSWIEIKN 753



 Score =  235 bits (599), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 165/617 (26%), Positives = 305/617 (49%), Gaps = 45/617 (7%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A +LFDE P +D+  YN L+    +  H ++AL+L+ ++ S G+     T S  L VC  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G Q+HC+ L  GF  ++ +G+ LVD+YM+         +FDE+  +N+ +W  +
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           L  +      DEV+ + N+M+ EGV PNG +F  ++   +   +++ G Q+H+ ++K G+
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            +   FV NAL+  Y     + +A+  FD + V D ++WN ++  YA      +  ++F 
Sbjct: 237 -EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           RM+L   + S   F   L   S+   + F KQ+H  V K G++     +++AL   Y KC
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQ-DIRTALMVTYSKC 354

Query: 363 NVIESSVAVFESA-PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           + ++ +  +F  A    ++    +++   + + N K AV++F  M  EG+  +  T ST 
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L     S  +       LH   IK+ +E   +V+ +L+DAY + G++  S +VF  IP+ 
Sbjct: 415 LAGKPSSLLSQ------LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAK 468

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN------------ 529
           ++V +++++ G ++     +A+++   +++ G+ P++ TF  V+  C+            
Sbjct: 469 DIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528

Query: 530 HSGMVKEGQ----LVFNSMKSVYGIDAD---------RQH------YSCMIDMLGRAGIL 570
           H+  VK G+     V +++ ++Y    +         RQ       ++ MI   G+ G  
Sbjct: 529 HATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDA 588

Query: 571 DKAEELLQQTPGGG---DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV--YSQ 625
            KA E+ Q     G   D + +  +L +C   G    G +  NI+++   +D     YS 
Sbjct: 589 KKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKXEHYSC 648

Query: 626 VSNFYSEIGEFEVSMQI 642
           + + YS  G F+ +M I
Sbjct: 649 MVDLYSRAGMFDKAMDI 665



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 119/443 (26%), Positives = 206/443 (46%), Gaps = 9/443 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +   +  N  I  ++KS  +  A+ +FD M  RD VT+N++I G        +   ++  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G+K S + F + L +CS         Q+HC V+  G+     I + L+  Y +   
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 161 SVRALDLFDEL-PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
              A  LF       N+ TW  M+  F + +   + + ++ +M  EGV PN  ++  ++ 
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNKKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           G    +L     QLH+ +IK  +  V   VA AL+D Y   G+++E+ + F  IP  D++
Sbjct: 417 GKPSSLL----SQLHAQIIKAYYEKVPS-VATALLDAYVKTGNVVESARVFYSIPAKDIV 471

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGY 338
           +W+++++  A       A+E+F ++     +P+  +F   +N  +S    V  GKQIH  
Sbjct: 472 AWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHAT 531

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K G    ++ V SAL  MY K   IES+  VF     R +   NS++T     G+ K 
Sbjct: 532 AVKSG-KSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKK 590

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+E+F  M ++G+ LD+VT    L A + +     G  +  +        +        +
Sbjct: 591 ALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGE-KYFNIMIKDYHIDKKXEHYSCM 649

Query: 459 MDAYSRCGHIELSHQVFEKIPSP 481
           +D YSR G  + +  +   +P P
Sbjct: 650 VDLYSRAGMFDKAMDIINGMPFP 672


>gi|255585601|ref|XP_002533488.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526650|gb|EEF28892.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 939

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 187/622 (30%), Positives = 325/622 (52%), Gaps = 6/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ + +  +D + K   L+ + K+F E+P ++ V ++ +I+GC +       L L+ EM 
Sbjct: 210 DVVTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQ 269

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI  S S ++SV   C+       G Q+H   L   FG ++ +G+  +D+Y + G   
Sbjct: 270 KVGIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDFGSDITVGTATLDMYAKCGSLA 329

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC- 221
            A  +F+ LP+ +L  +N ++       +  E L+ +  +   G+  N +S       C 
Sbjct: 330 DAQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFFQLLLKSGLGFNEISLSGAFSACA 389

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           SI   LD G+QLHS  +K   +  NI VAN+++D Y  C +L EA   FD +   D +SW
Sbjct: 390 SIKGDLD-GRQLHSLSVK-STLRSNICVANSILDMYGKCEALSEACCMFDEMERRDAVSW 447

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++++ +       + L LF  M   R  P   ++   L   S    +  G +IH  + K
Sbjct: 448 NAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIK 507

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G    S  V  AL DMY KC +IE +  + +    +++   N+++       + +DA  
Sbjct: 508 SGLGLDSF-VGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHS 566

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            F  M+   +  D  T +  L A +  AS  LG  + +H   IK    S++ ++ +L+D 
Sbjct: 567 FFYEMLKMSVKPDNFTYAIVLDACANLASVGLG--KQIHGQIIKLELHSDVYITSTLVDM 624

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+CG+++ S  VFEK P+ + V + +++ GY+++G+G EAL   E M    + P+  TF
Sbjct: 625 YSKCGNMQDSALVFEKAPNKDFVTWNAMICGYAQHGLGEEALGYFERMQLENVRPNHATF 684

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L  C H G + +G   FN+M + YG++   +HYSCMID++GR+G + +A +L+Q+ P
Sbjct: 685 VSILRACAHMGFIDKGLHYFNAMLTEYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMP 744

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D ++W +LL  C++HGN  I  +  N +++LEP D +    +SN Y++ G +    +
Sbjct: 745 FEADAVIWRTLLSICKIHGNIEIAEKATNAILQLEPEDSSACILLSNIYADAGMWGKVSE 804

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R+     KL ++ G S IEV 
Sbjct: 805 MRKMMRYNKLKKEPGCSWIEVK 826



 Score =  189 bits (481), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 154/639 (24%), Positives = 298/639 (46%), Gaps = 55/639 (8%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPL-----SSSLLLDSYCQPNPQLNIYSSNRTIDDFVKS 57
            TKL  ++RT + +   C+    L     + + ++ S   P+    +Y SN  +  +++ 
Sbjct: 36  QTKLPTKIRTFSHIIQECSDYNSLKPGKQAHARMIVSGFIPD----VYISNCLMKMYLRC 91

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGK-----------FRHPKQALYLYDEMVSHGI 106
            HLN A K+F++M  RD+++YN +ISG              +  PK+ +  ++ M+S  +
Sbjct: 92  SHLNYAYKVFEKMSQRDVISYNTMISGYADAGEMNLANEFFYDTPKRDVVSWNSMLSGFL 151

Query: 107 KE---------------------SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
           +                        +TF+ VL  CS       GIQ+H  ++ +GF  ++
Sbjct: 152 QNGECRKSIDVFLDMGRSEEVGFDQTTFAVVLKACSVLEDGGLGIQVHGLIVRMGFYKDV 211

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
             GS L+D+Y +      +L +F E+P +N   W+ ++    +       L ++ +M+  
Sbjct: 212 VTGSALLDMYAKCKRLDDSLKIFSEIPVKNWVCWSAIIAGCVQNDEHILGLELFKEMQKV 271

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G+  +   +  + R C+    L  G QLH+H +K  +   +I V  A +D Y+ CGSL +
Sbjct: 272 GIGVSQSIYASVFRSCAGLSALKVGTQLHAHALKCDF-GSDITVGTATLDMYAKCGSLAD 330

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR----PSIRSFVEFLN 321
           A++ F+ +P   +  +N+I+      +  F+AL+ F   QL  K       I     F  
Sbjct: 331 AQRIFNSLPKHSLQCYNAIIVGCVRNEKGFEALQFF---QLLLKSGLGFNEISLSGAFSA 387

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
            AS  G++  G+Q+H    K      ++ V +++ DMYGKC  +  +  +F+    R   
Sbjct: 388 CASIKGDLD-GRQLHSLSVKSTL-RSNICVANSILDMYGKCEALSEACCMFDEMERRDAV 445

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             N+++ +   +GN ++ + +F  M+   +  D+ T  + LKA S   + N G    +H 
Sbjct: 446 SWNAVIAAHEQNGNEEETLNLFASMLRLRMEPDQFTYGSVLKACSSQQALNSG--MEIHN 503

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             IKSG   +  V  +L+D Y +CG IE + ++ ++I    +V + +I+ G++      +
Sbjct: 504 RIIKSGLGLDSFVGGALIDMYCKCGMIEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSED 563

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A      M++  + PD  T+  VL  C +   V  G+ +   +  +  + +D    S ++
Sbjct: 564 AHSFFYEMLKMSVKPDNFTYAIVLDACANLASVGLGKQIHGQIIKL-ELHSDVYITSTLV 622

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           DM  + G +  +  + ++ P   D + W++++     HG
Sbjct: 623 DMYSKCGNMQDSALVFEKAP-NKDFVTWNAMICGYAQHG 660



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 144/289 (49%), Gaps = 2/289 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLL-DSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML  ++ P   T  ++   C+S   L+S + + +   +    L+ +     ID + K G 
Sbjct: 470 MLRLRMEPDQFTYGSVLKACSSQQALNSGMEIHNRIIKSGLGLDSFVGGALIDMYCKCGM 529

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  AKK+ D +  + MV++N +I+G    +H + A   + EM+   +K    T++ VL  
Sbjct: 530 IEEAKKIHDRIEQQTMVSWNAIIAGFTLLKHSEDAHSFFYEMLKMSVKPDNFTYAIVLDA 589

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+N      G QIH +++ L    ++YI S LVD+Y + G    +  +F++ P ++  TW
Sbjct: 590 CANLASVGLGKQIHGQIIKLELHSDVYITSTLVDMYSKCGNMQDSALVFEKAPNKDFVTW 649

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + +    +E L  + +M+ E V PN  +F  ++R C+    +D+G    + ++ 
Sbjct: 650 NAMICGYAQHGLGEEALGYFERMQLENVRPNHATFVSILRACAHMGFIDKGLHYFNAMLT 709

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSI 287
              ++  I   + ++D     G + EA K    +P + D + W +++SI
Sbjct: 710 EYGLEPQIEHYSCMIDIIGRSGRISEALKLIQEMPFEADAVIWRTLLSI 758


>gi|225464281|ref|XP_002271266.1| PREDICTED: pentatricopeptide repeat-containing protein At3g16610
           [Vitis vinifera]
          Length = 785

 Score =  308 bits (788), Expect = 8e-81,   Method: Compositional matrix adjust.
 Identities = 179/602 (29%), Positives = 316/602 (52%), Gaps = 5/602 (0%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A++LFDE+P   ++ +N +I           A+ LY  M+  G++ +  T+  VL  CS 
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                +G++IH      G   ++++ + LVD Y + G  V A  LF  +  R++  WN M
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +         D+ +++  +M+ EG+ PN  +   ++        L  GK LH + ++  +
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF 241

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            D  + V   L+D Y+ C  L+ A+K FD + V + +SW++++  Y   D + +ALELF 
Sbjct: 242 -DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFD 300

Query: 303 RMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           +M L     P+  +    L   ++  ++  G+++H Y+ KLG     + + + L  MY K
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLG-SVLDILLGNTLLSMYAK 359

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C VI+ ++  F+    +     +++++  + +GN   A+ +F  M   GI  D  T+   
Sbjct: 360 CGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGV 419

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A S  A+   G C   H   I  GF ++  +  +L+D YS+CG I  + +VF ++   
Sbjct: 420 LPACSHLAALQHGFCS--HGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH 477

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           ++V + +++ GY  +G+G EAL +   ++  GL PD +TF+C+L+ C+HSG+V EG+L F
Sbjct: 478 DIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWF 537

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           ++M   + I    +H  CM+D+LGRAG++D+A   ++  P   D  +WS+LL +CR+H N
Sbjct: 538 DAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKN 597

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             +G  V+  +  L P     +  +SN YS  G ++ +  IR T     L +  G S IE
Sbjct: 598 IELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIE 657

Query: 662 VN 663
           +N
Sbjct: 658 IN 659



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 253/494 (51%), Gaps = 7/494 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E  + +  +L  C  +   TE  +IH   L      +  +   L  LY+     V A  L
Sbjct: 6   EVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRL 65

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P  ++  WN ++RA+      D  + +Y+ M   GV PN  ++ ++++ CS  + +
Sbjct: 66  FDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAI 125

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           ++G ++HSH    G ++ ++FV  ALVDFY+ CG L+EA++ F  +   DV++WN++++ 
Sbjct: 126 EDGVEIHSHAKMFG-LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
            + Y L  DA++L  +MQ     P+  + V  L        +  GK +HGY  +  FD+G
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNG 244

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            V V + L DMY KC  +  +  +F+    R+    ++++   + S  +K+A+E+F  M+
Sbjct: 245 VV-VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVASDCMKEALELFDQMI 303

Query: 408 -DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             + +    VTL + L+A   +   +L   R LHC  IK G   +I +  +L+  Y++CG
Sbjct: 304 LKDAMDPTPVTLGSVLRA--CAKLTDLSRGRKLHCYIIKLGSVLDILLGNTLLSMYAKCG 361

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            I+ + + F+++   + V F++I++G  +NG    AL +  +M   G+ PD  T L VL 
Sbjct: 362 VIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLP 421

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H   ++ G    +    V G   D    + +IDM  + G +  A E+  +     D 
Sbjct: 422 ACSHLAALQHG-FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDI 479

Query: 587 MMWSSLLRSCRVHG 600
           + W++++    +HG
Sbjct: 480 VSWNAMIIGYGIHG 493



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 230/497 (46%), Gaps = 10/497 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T   +   C+ ++ +   + + S+ +    + +++     +D + K G 
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A++LF  M  RD+V +N +I+GC  +     A+ L  +M   GI  ++ST   VL  
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
              A     G  +H   +   F   + +G+ L+D+Y +    + A  +FD +  RN  +W
Sbjct: 220 VGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSW 279

Query: 180 NLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           + M+  +       E L ++++M   + ++P  ++   ++R C+    L  G++LH ++I
Sbjct: 280 SAMIGGYVASDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII 339

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           KLG V ++I + N L+  Y+ CG + +A + FD +   D +S+++IVS          AL
Sbjct: 340 KLGSV-LDILLGNTLLSMYAKCGVIDDAIRFFDEMNPKDSVSFSAIVSGCVQNGNAAVAL 398

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            +F  MQL    P + + +  L   S    +  G   HGY+   GF   ++ + +AL DM
Sbjct: 399 SIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTL-ICNALIDM 457

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y KC  I  +  VF       +   N+++      G   +A+ +F  ++  G+  D++T 
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMDAYSRCGHIELSHQVFE 476
              L + S S     G    L   A+   F     +     ++D   R G I+ +H    
Sbjct: 518 ICLLSSCSHSGLVMEGR---LWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIR 574

Query: 477 KIP-SPNVVCFTSIMNG 492
            +P  P+V  ++++++ 
Sbjct: 575 NMPFEPDVRIWSALLSA 591


>gi|224107052|ref|XP_002333576.1| predicted protein [Populus trichocarpa]
 gi|222837227|gb|EEE75606.1| predicted protein [Populus trichocarpa]
          Length = 781

 Score =  308 bits (788), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 187/625 (29%), Positives = 331/625 (52%), Gaps = 12/625 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  I+ +V+ G   SA+KLFDEMP R+ VT+  LISG  +   P+ A  +  EM+
Sbjct: 34  DLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMPEDACGVLKEMI 93

Query: 103 SHGIKESASTFSSVLSVCSNAGFYT-EGIQIHCRVLSLGFG-LNLYIGSPLVDLYMRMGP 160
             G   +   F S +  C  +  +  +G Q+H   +  G     + +G+ L+++Y + G 
Sbjct: 94  FEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGNGLINMYAKCGD 153

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F  + +++  +WN M+    +    ++ ++ YN M+  G+ P+  +    +  
Sbjct: 154 IDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFALISALSS 213

Query: 221 C-SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           C S+G +L  G+Q H   IKLG +D+++ V+N L+  Y+    L E +K F ++   D +
Sbjct: 214 CASLGCIL-LGQQTHGEGIKLG-LDMDVSVSNTLLALYAETSRLAECQKVFSWMLERDQV 271

Query: 280 SWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           SWN+++   AD    + +A+E+F  M      P+  +F+  L   S         QIH  
Sbjct: 272 SWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHAL 331

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHSGNIK 397
           + K      +  +++AL   YGK   +E+   +F     R  E   NS+++  +H+  + 
Sbjct: 332 ILKYNVKDDNA-IENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHNELLC 390

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A+++   M+  G  LD  T +T L A +  A+   G    +H CAI++  ES++ +  +
Sbjct: 391 KAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECG--MEVHACAIRACLESDVVIGSA 448

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D YS+CG I+ + + F  +P  N+  + S+++GY+R+G G  AL +   M   G +PD
Sbjct: 449 LVDMYSKCGRIDYASRFFNLMPVRNLYSWNSMISGYARHGHGDNALRLFTRMKLSGQLPD 508

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            +TF+ VL+ C+H G+V EG   F SM  VYG+    +HYSCM+D+LGRAG LDK E  +
Sbjct: 509 HITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKIENFI 568

Query: 578 QQTPGGGDCMMWSSLLRS-CRVHGNEI-IGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            + P   + ++W ++L + CR +G +  +GRR A +L  ++P +   Y  +SN Y+  G+
Sbjct: 569 NKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDPQNAVNYVLLSNMYASGGK 628

Query: 636 FEVSMQIRETALARKLTRDIGHSLI 660
           +E   + R       + ++ G S +
Sbjct: 629 WEDMARTRRAMREAAVKKEAGCSWV 653



 Score =  186 bits (473), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 126/472 (26%), Positives = 235/472 (49%), Gaps = 8/472 (1%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  VL  GF  +L++ + L+++Y+R+G  V A  LFDE+P+RN  TW  ++  + +   P
Sbjct: 23  HLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNGMP 82

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL-DEGKQLHSHVIKLGWVDVNIFVAN 251
           ++   +  +M  EG  PN  +F   +R C   ML   +G+Q+H + I+ G  D  + V N
Sbjct: 83  EDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAVGN 142

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
            L++ Y+ CG +  A+  F  +   D +SWNS+++         DA++ +  M+     P
Sbjct: 143 GLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMP 202

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
           S  + +  L+  +  G +  G+Q HG   KLG D   V V + L  +Y + + +     V
Sbjct: 203 SNFALISALSSCASLGCILLGQQTHGEGIKLGLDM-DVSVSNTLLALYAETSRLAECQKV 261

Query: 372 FESAPGRSLECCNSLMTSLLHSG-NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           F     R     N+++ +L  SG ++ +A+E+F  M+  G   + VT    L  +S  ++
Sbjct: 262 FSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLST 321

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSI 489
           + L     +H   +K   + + A+  +L+  Y + G +E   ++F ++    + V + S+
Sbjct: 322 SKLS--HQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSM 379

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           ++GY  N +  +A+D++ +M+QRG   D  TF  VL+ C     ++ G  V ++      
Sbjct: 380 ISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLECGMEV-HACAIRAC 438

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +++D    S ++DM  + G +D A       P   +   W+S++     HG+
Sbjct: 439 LESDVVIGSALVDMYSKCGRIDYASRFFNLMP-VRNLYSWNSMISGYARHGH 489



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 80/322 (24%), Positives = 154/322 (47%), Gaps = 3/322 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP-KQALYLYDE 100
           +++  SN  +  + ++  L   +K+F  M  RD V++N +I           +A+ ++ E
Sbjct: 237 MDVSVSNTLLALYAETSRLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLE 296

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  G   +  TF ++L+  S+        QIH  +L      +  I + L+  Y + G 
Sbjct: 297 MMRAGWSPNRVTFINLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGE 356

Query: 161 SVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                ++F  + E R+  +WN M+  +       + + +   M   G   +  +F  ++ 
Sbjct: 357 MENCEEIFSRMSERRDEVSWNSMISGYIHNELLCKAMDLVWLMMQRGQRLDCFTFATVLS 416

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+ G ++H+  I+   ++ ++ + +ALVD YS CG +  A + F+ +PV ++ 
Sbjct: 417 ACATVATLECGMEVHACAIR-ACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPVRNLY 475

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNS++S YA +    +AL LF RM+L  + P   +FV  L+  S  G V  G +    +
Sbjct: 476 SWNSMISGYARHGHGDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSM 535

Query: 340 TKLGFDHGSVHVQSALTDMYGK 361
           T++      V   S + D+ G+
Sbjct: 536 TEVYGLVPRVEHYSCMVDLLGR 557



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 40/157 (25%), Positives = 81/157 (51%), Gaps = 2/157 (1%)

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           L H   +K GF+S++ +  +L++ Y R G    + ++F+++P  N V +  +++GY++NG
Sbjct: 21  LFHLNVLKHGFDSDLFLCNTLINVYVRIGDCVSARKLFDEMPDRNGVTWACLISGYTQNG 80

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV-KEGQLVFNSMKSVYGIDADRQH 556
           M  +A  +L+ MI  G +P++  F   +  C  S +  ++G+ V          DA    
Sbjct: 81  MPEDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLWRRKGRQVHGYAIRTGLNDAKVAV 140

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            + +I+M  + G +D A  +        D + W+S++
Sbjct: 141 GNGLINMYAKCGDIDHARSVFGLMV-DKDSVSWNSMI 176


>gi|225455746|ref|XP_002268440.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Vitis vinifera]
          Length = 881

 Score =  308 bits (788), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 190/627 (30%), Positives = 334/627 (53%), Gaps = 14/627 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  I  + K G +  A K+F+ MP R++V++N +I G  +    +++   + EM+
Sbjct: 135 DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREML 194

Query: 103 --SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
                     +T  +VL VC+      +G+ +H   + LG    L + + L+D+Y +   
Sbjct: 195 VGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNEELMVNNSLIDMYSKCRF 254

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY---NKMKAEGVEPNGLSFCYM 217
              A  LFD+  ++N+ +WN M+  +   +R ++V R +    KM+ E  +     F  +
Sbjct: 255 LSEAQLLFDKNDKKNIVSWNSMIGGY---AREEDVCRTFYLLQKMQTEDAKMKADEFTIL 311

Query: 218 --VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
             +  C     L   K+LH +  + G +  N  VANA +  Y+ CG+L  +++ FD +  
Sbjct: 312 NVLPVCLERSELQSLKELHGYSWRHG-LQSNELVANAFIAAYTRCGALCSSERVFDLMDT 370

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
             V SWN+++  YA       AL+L+ +M      P   +    L   SR  ++++G++I
Sbjct: 371 KTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEI 430

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG+  + G       +  +L  +Y  C    ++  +F+    RSL   N ++     +G 
Sbjct: 431 HGFALRNGLAVDPF-IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGL 489

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             +A+ +F  M+ +GI   E+ +     A S  ++  LG  + LHC A+K+    +I VS
Sbjct: 490 PDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLG--KELHCFALKAHLTEDIFVS 547

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            S++D Y++ G I LS ++F+++   +V  +  I+ GY  +G G+EAL++ E M++ GL 
Sbjct: 548 SSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLK 607

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD  TF  +L  C+H+G+V++G   FN M +++ I+   +HY+C++DMLGRAG +D A  
Sbjct: 608 PDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALR 667

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L+++ PG  D  +WSSLL SCR+HGN  +G +VAN L+ELEP     Y  +SN ++  G+
Sbjct: 668 LIEEMPGDPDSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGK 727

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++   ++R       L +D G S IEV
Sbjct: 728 WDDVRRVRGRMKDIGLQKDAGCSWIEV 754



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 131/584 (22%), Positives = 271/584 (46%), Gaps = 17/584 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS--- 103
           + R I  +   G  + ++ +FD++  +++  +N ++S   +    + A+ ++ E++S   
Sbjct: 37  NTRIITMYSMCGSPSDSRMVFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTE 96

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           H  K    T   V+  C+       G  IH     +    ++++G+ L+ +Y + G    
Sbjct: 97  H--KPDNFTLPCVIKACAGLLDLGLGQIIHGMATKMDLVSDVFVGNALIAMYGKCGLVEE 154

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM--KAEGVEPNGLSFCYMVRGC 221
           A+ +F+ +PERNL +WN ++  F E     E    + +M    E   P+  +   ++  C
Sbjct: 155 AVKVFEHMPERNLVSWNSIICGFSENGFLQESFNAFREMLVGEESFVPDVATLVTVLPVC 214

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    +++G  +H   +KLG ++  + V N+L+D YS C  L EA+  FD     +++SW
Sbjct: 215 AGEEDIEKGMAVHGLAVKLG-LNEELMVNNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSW 273

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF--VEFLNFASRTGNVYFGKQIHGYV 339
           NS++  YA  + +     L  +MQ    +     F  +  L        +   K++HGY 
Sbjct: 274 NSMIGGYAREEDVCRTFYLLQKMQTEDAKMKADEFTILNVLPVCLERSELQSLKELHGYS 333

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + G     + V +A    Y +C  + SS  VF+    +++   N+L+     + + + A
Sbjct: 334 WRHGLQSNEL-VANAFIAAYTRCGALCSSERVFDLMDTKTVSSWNALLCGYAQNSDPRKA 392

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           ++++  M D G+  D  T+ + L A S   S + G    +H  A+++G   +  +  SL+
Sbjct: 393 LDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGE--EIHGFALRNGLAVDPFIGISLL 450

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y  CG    +  +F+ +   ++V +  ++ GYS+NG+  EA+++   M+  G+ P ++
Sbjct: 451 SLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEI 510

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
             +CV   C+    ++ G+ +       + +  D    S +IDM  + G +  ++ +  +
Sbjct: 511 AIMCVCGACSQLSALRLGKELHCFALKAH-LTEDIFVSSSIIDMYAKGGCIGLSQRIFDR 569

Query: 580 TPGGGDCMMWSSLLRSCRVH--GNEIIGRRVANILMELEPVDFA 621
                D   W+ ++    +H  G E +      + + L+P DF 
Sbjct: 570 LR-EKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFT 612



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 188/387 (48%), Gaps = 3/387 (0%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           TI  + P C     L S   L  Y   +  Q N   +N  I  + + G L S++++FD M
Sbjct: 309 TILNVLPVCLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALCSSERVFDLM 368

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             + + ++N L+ G  +   P++AL LY +M   G+     T  S+L  CS       G 
Sbjct: 369 DTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGE 428

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           +IH   L  G  ++ +IG  L+ LY+  G    A  LFD +  R+L +WN+M+  + +  
Sbjct: 429 EIHGFALRNGLAVDPFIGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNG 488

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            PDE + ++ +M ++G++P  ++   +   CS    L  GK+LH   +K    + +IFV+
Sbjct: 489 LPDEAINLFRQMLSDGIQPYEIAIMCVCGACSQLSALRLGKELHCFALKAHLTE-DIFVS 547

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           ++++D Y+  G +  +++ FD +   DV SWN I++ Y  +    +ALELF +M     +
Sbjct: 548 SSIIDMYAKGGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLK 607

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   +F   L   S  G V  G +    +  L      +   + + DM G+   I+ ++ 
Sbjct: 608 PDDFTFTGILMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALR 667

Query: 371 VFESAPGR-SLECCNSLMTSLLHSGNI 396
           + E  PG       +SL++S    GN+
Sbjct: 668 LIEEMPGDPDSRIWSSLLSSCRIHGNL 694



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 102/429 (23%), Positives = 205/429 (47%), Gaps = 10/429 (2%)

Query: 116 VLSVCSNAGFYTEGIQIHCRV-LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           +L  C        G ++H  V  S  F  +  + + ++ +Y   G    +  +FD+L  +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           NL  WN ++ A+      ++ + +++++      +P+  +   +++ C+  + L  G+ +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLLDLGLGQII 123

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H    K+  V  ++FV NAL+  Y  CG + EA K F+ +P  +++SWNSI+  +++   
Sbjct: 124 HGMATKMDLVS-DVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENGF 182

Query: 294 IFDALELFFRMQLCRKR--PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           + ++   F  M +  +   P + + V  L   +   ++  G  +HG   KLG +   + V
Sbjct: 183 LQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAVHGLAVKLGLNE-ELMV 241

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            ++L DMY KC  +  +  +F+    +++   NS++       ++     +   M  E  
Sbjct: 242 NNSLIDMYSKCRFLSEAQLLFDKNDKKNIVSWNSMIGGYAREEDVCRTFYLLQKMQTEDA 301

Query: 412 GL--DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  DE T+   L        + L S + LH  + + G +SN  V+ + + AY+RCG + 
Sbjct: 302 KMKADEFTILNVLPV--CLERSELQSLKELHGYSWRHGLQSNELVANAFIAAYTRCGALC 359

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            S +VF+ + +  V  + +++ GY++N   R+ALD+   M   GL PD  T   +L  C+
Sbjct: 360 SSERVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACS 419

Query: 530 HSGMVKEGQ 538
               +  G+
Sbjct: 420 RMKSLHYGE 428



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/278 (22%), Positives = 132/278 (47%), Gaps = 7/278 (2%)

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L    +  ++  G+++H  V+          + + +  MY  C     S  VF+    +
Sbjct: 4   LLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRMVFDKLRRK 63

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCR 437
           +L   N+++++   +   +DA+ +F  ++       D  TL   +KA   +   +LG  +
Sbjct: 64  NLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKA--CAGLLDLGLGQ 121

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           ++H  A K    S++ V  +L+  Y +CG +E + +VFE +P  N+V + SI+ G+S NG
Sbjct: 122 IIHGMATKMDLVSDVFVGNALIAMYGKCGLVEEAVKVFEHMPERNLVSWNSIICGFSENG 181

Query: 498 MGREALDMLEVMI--QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
             +E+ +    M+  +   +PD  T + VL  C     +++G  V + +    G++ +  
Sbjct: 182 FLQESFNAFREMLVGEESFVPDVATLVTVLPVCAGEEDIEKGMAV-HGLAVKLGLNEELM 240

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             + +IDM  +   L +A+ L  +     + + W+S++
Sbjct: 241 VNNSLIDMYSKCRFLSEAQLLFDKND-KKNIVSWNSMI 277


>gi|359486639|ref|XP_002284011.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Vitis vinifera]
          Length = 1005

 Score =  307 bits (787), Expect = 9e-81,   Method: Compositional matrix adjust.
 Identities = 177/622 (28%), Positives = 334/622 (53%), Gaps = 6/622 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  ID + K G ++ A+++FD+M  +D V++  +++G        + L L+D+M    +
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + +  +  S     +      +G +IH   L      ++ + +PL+ +Y + G + +A  
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LF  L  R+L  W+ ++ A  +   P+E L ++ +M+ + ++PN ++   ++  C+   L
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L  GK +H   +K   +D ++    ALV  Y+ CG    A  +F+ +   D+++WNS+++
Sbjct: 446 LKLGKSIHCFTVKAD-MDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLIN 504

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA     ++A+++F++++L    P   + V  +   +   ++  G  IHG + KLGF+ 
Sbjct: 505 GYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE- 563

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGF 405
              HV++AL DMY KC  + S+  +F        E   N ++ + + +G+ K+A+  F  
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQ 623

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  E    + VT  + L A +  A+   G     H C I+ GF SN  V  SL+D Y++C
Sbjct: 624 MRLENFHPNSVTFVSVLPAAAYLAAFREGMA--FHACIIQMGFLSNTLVGNSLIDMYAKC 681

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ S ++F ++   + V + ++++GY+ +G G  A+ +  +M +  +  D V+F+ VL
Sbjct: 682 GQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVL 741

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C H+G+V+EG+ +F+SM   Y I  D +HY+CM+D+LGRAG+ D+    ++  P   D
Sbjct: 742 SACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPD 801

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             +W +LL SCR+H N  +G    + L++LEP + A +  +S+ Y++ G +  + + R  
Sbjct: 802 AGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSK 861

Query: 646 ALARKLTRDIGHSLIEV-NSCH 666
                L +  G S +E+ N  H
Sbjct: 862 MNDLGLKKTPGCSWVELKNKVH 883



 Score =  239 bits (609), Expect = 5e-60,   Method: Compositional matrix adjust.
 Identities = 162/612 (26%), Positives = 302/612 (49%), Gaps = 28/612 (4%)

Query: 11  RTITTLAPTCTSIVPLSSSL---------LLDSYCQPNPQLNIYSS--------NRTIDD 53
           R+ T++A   +    LSSS          LL S    NP L I++         + +I  
Sbjct: 9   RSFTSIATAASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITH 68

Query: 54  FVKSGHL----NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            +    L    + A+ +FD  P    + +N +I    + +   +AL +Y  MV  G++  
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
             TF+ VL  C+ A    EG+  H  +   G   +++IG+ LVD+Y +MG   RA ++FD
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           ++P+R++  WN M+    +   P E +  +  M+  GVEP+ +S   +  G      ++ 
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            + +H +V +    D +  V+N L+D YS CG +  A++ FD +   D +SW ++++ YA
Sbjct: 249 CRSIHGYVFRR---DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYA 305

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                 + LELF +M+L   R +  S V     A+ T ++  GK+IHG   +   D   +
Sbjct: 306 HNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRID-SDI 364

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V + L  MY KC   E +  +F    GR L   ++++ +L+ +G  ++A+ +F  M ++
Sbjct: 365 LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQ 424

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  + VTL + L A +  +   LG  + +HC  +K+  +S+++   +L+  Y++CG   
Sbjct: 425 KMKPNRVTLMSILPACADLSLLKLG--KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFT 482

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +   F ++ S ++V + S++NGY++ G    A+DM   +    + PD  T + V+  C 
Sbjct: 483 AALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
               + +G  +   +  + G ++D    + +IDM  + G L  AE L  +T    D + W
Sbjct: 543 LLNDLDQGTCIHGLIVKL-GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTW 601

Query: 590 SSLLRSCRVHGN 601
           + ++ +   +G+
Sbjct: 602 NVIIAAYMQNGH 613



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 44/143 (30%), Positives = 69/143 (48%), Gaps = 2/143 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N    N  ID + K G L+ ++KLF+EM  +D V++N ++SG     H  +A+ L+  M 
Sbjct: 667 NTLVGNSLIDMYAKCGQLDYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 726

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQI-HCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              ++  + +F SVLS C +AG   EG +I H          +L   + +VDL  R G  
Sbjct: 727 ESQVQIDSVSFVSVLSACRHAGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 786

Query: 162 VRALDLFDELP-ERNLATWNLML 183
              L     +P E +   W  +L
Sbjct: 787 DETLGFIKVMPVEPDAGVWGALL 809


>gi|224077710|ref|XP_002305373.1| predicted protein [Populus trichocarpa]
 gi|222848337|gb|EEE85884.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 199/670 (29%), Positives = 350/670 (52%), Gaps = 20/670 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           L P+     +L     +   L+S+  L ++   +  L+I   +  +  +   G++++A+K
Sbjct: 17  LAPKTTQYQSLLKHYGAAQSLTSTKQLHAHLITSGLLSIDIRSVLVATYAHCGYVHNARK 76

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS---TFSSVLSVCSN 122
           LFDE+  R  + YN +I          +A+ ++ EM+  G K+      T+  V+  CS 
Sbjct: 77  LFDELRQRGTLLYNFMIKMYIAKGDYFEAMKVFLEML--GSKDCCPDNYTYPFVIKACSE 134

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G  +H   L   FG +L++ + L+ +YM  G    A  +FD + E+++ +WN M
Sbjct: 135 LLLVEYGRVLHGLTLVSKFGSHLFVLNSLLAMYMNCGEVEEARKVFDAMKEKSVVSWNTM 194

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  + +    +  L ++N+M   GVE +G S   ++  C     L+ G+++H      G 
Sbjct: 195 INGYFKNGFANTALVVFNQMVDSGVEIDGASVVSVLPACGYLKELEVGRRVH------GL 248

Query: 243 VDVNIF----VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           V+  +     V+NALVD Y+ CGS+ EA+  FD +   DV+SW S+++ Y        AL
Sbjct: 249 VEEKVLGKKIVSNALVDMYAKCGSMDEARLVFDNMVERDVVSWTSMINGYILNGDAKSAL 308

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            LF  MQ+   RP+  +    L   +   N+  G+ +HG+V K    +  V V+++L DM
Sbjct: 309 SLFKIMQIEGLRPNSVTIALILLACASLNNLKDGRCLHGWVMKQRL-YSEVAVETSLIDM 367

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y KCN +  S +VF     +     N+L++  +H+    +A+ +F  M+ EG+ ++  T 
Sbjct: 368 YAKCNCLGLSFSVFTRTSRKKTVPWNALLSGCVHNKLATEAIGLFKKMLMEGVEINAATC 427

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           ++ L A  + A  +L     ++   ++SGF SNI V+ SL+D YS+CG +E +H++F  I
Sbjct: 428 NSLLPAYGILA--DLQPVNNINSYLMRSGFVSNIQVATSLIDIYSKCGSLESAHKIFNTI 485

Query: 479 PS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
           P    ++  ++ I+ GY  +G G  A+ + + M+Q G+ P+ VTF  VL  C+H+GMV +
Sbjct: 486 PVDVQDIFVWSIIIAGYGMHGHGETAVSLFKQMVQSGVKPNDVTFTSVLQSCSHAGMVDD 545

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G  +F  M   +    +  HY+CM+D+LGRAG +D+A +L++  P      +W +LL +C
Sbjct: 546 GLYLFKFMLKDHQTIPNDDHYTCMVDLLGRAGRMDEAYDLIKTMPFMPGHAVWGALLGAC 605

Query: 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
            +H N  +G   A  L ELEP +   Y  ++  Y+ +G +E +  +R+      L +   
Sbjct: 606 VMHENVELGEVAARWLFELEPGNTGNYVLLAKLYAALGRWEDAENVRQRMDDIGLRKAPA 665

Query: 657 HSLIEVNSCH 666
           HSLIE  + +
Sbjct: 666 HSLIEAGTVN 675


>gi|15229753|ref|NP_190611.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75202753|sp|Q9SCT2.1|PP277_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g50420
 gi|6561982|emb|CAB62471.1| putative protein [Arabidopsis thaliana]
 gi|332645144|gb|AEE78665.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 794

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 193/625 (30%), Positives = 336/625 (53%), Gaps = 12/625 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY---LYDEM 101
           Y++N  I  +V+ G L  A+K+FD+MP R++V+YN L S     R+P  A Y   L   M
Sbjct: 133 YANNNLISMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYS--RNPDFASYAFPLTTHM 190

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +K ++STF+S++ VC+       G  ++ +++ LG+  N+ + + ++ +Y   G  
Sbjct: 191 AFEYVKPNSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSDNVVVQTSVLGMYSSCGDL 250

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD +  R+   WN M+    +  + ++ L  +  M   GV+P   ++  ++ GC
Sbjct: 251 ESARRIFDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGC 310

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S       GK +H+ +I    +  ++ + NAL+D Y +CG + EA   F  I   +++SW
Sbjct: 311 SKLGSYSLGKLIHARIIVSDSL-ADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSW 369

Query: 282 NSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           NSI+S  ++      A+ ++ R+ ++   RP   +F   ++  +       GK +HG VT
Sbjct: 370 NSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQVT 429

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLG++  SV V + L  MY K    ES+  VF+    R +     ++      GN + AV
Sbjct: 430 KLGYER-SVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAV 488

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           + F  M  E    D  +LS+ + A S  A    G   + HC AI++GF+  ++V  +L+D
Sbjct: 489 QFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQG--EVFHCLAIRTGFDCVMSVCGALVD 546

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y + G  E +  +F    +P++ C+ S++  YS++GM  +AL   E +++ G +PD VT
Sbjct: 547 MYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVT 606

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           +L +LA C+H G   +G+ ++N MK   GI A  +HYSCM++++ +AG++D+A EL++Q+
Sbjct: 607 YLSLLAACSHRGSTLQGKFLWNQMKE-QGIKAGFKHYSCMVNLVSKAGLVDEALELIEQS 665

Query: 581 -PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            PG     +W +LL +C    N  IG   A  +++L+P D A +  +SN Y+  G +E  
Sbjct: 666 PPGNNQAELWRTLLSACVNTRNLQIGLYAAEQILKLDPEDTATHILLSNLYAVNGRWEDV 725

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
            ++R        ++D G S IEVN+
Sbjct: 726 AEMRRKIRGLASSKDPGLSWIEVNN 750



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 152/574 (26%), Positives = 269/574 (46%), Gaps = 31/574 (5%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y++N  I  +V+   L  A+K+FD+MP R++VT   L      F +      L+ +++  
Sbjct: 23  YANNNLISMYVRCSSLEQARKVFDKMPQRNIVT---LFGLSAVFEYVSMGSSLHSQIIKL 79

Query: 105 G---------IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL---NLYIGSPLV 152
           G         + E AS+   +   C +        QIH  VL+ G G    + Y  + L+
Sbjct: 80  GSFQMIFFMPLNEIASSVVELTRKCVSITVLKRARQIHALVLTAGAGAATESPYANNNLI 139

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD---EVLRMYNKMKAEGVEP 209
            +Y+R G   +A  +FD++P RN+ ++N +  A+     PD       +   M  E V+P
Sbjct: 140 SMYVRCGSLEQARKVFDKMPHRNVVSYNALYSAYSR--NPDFASYAFPLTTHMAFEYVKP 197

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           N  +F  +V+ C++   +  G  L+S +IKLG+ D N+ V  +++  YS+CG L  A++ 
Sbjct: 198 NSSTFTSLVQVCAVLEDVLMGSSLNSQIIKLGYSD-NVVVQTSVLGMYSSCGDLESARRI 256

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           FD +   D ++WN+++      D I D L  F  M +    P+  ++   LN  S+ G+ 
Sbjct: 257 FDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLNGCSKLGSY 316

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
             GK IH  +  +      + + +AL DMY  C  +  +  VF      +L   NS+++ 
Sbjct: 317 SLGKLIHARII-VSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVSWNSIISG 375

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
              +G  + A+ M+  ++       DE T S  + A +       G  +LLH    K G+
Sbjct: 376 CSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHG--KLLHGQVTKLGY 433

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           E ++ V  +L+  Y +    E + +VF+ +   +VV +T ++ G+SR G    A+     
Sbjct: 434 ERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELAVQFFIE 493

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M +     D  +   V+  C+   M+++G+ VF+ +    G D        ++DM G+ G
Sbjct: 494 MYREKNRSDGFSLSSVIGACSDMAMLRQGE-VFHCLAIRTGFDCVMSVCGALVDMYGKNG 552

Query: 569 ILDKAEEL--LQQTPGGGDCMMWSSLLRSCRVHG 600
             + AE +  L   P   D   W+S+L +   HG
Sbjct: 553 KYETAETIFSLASNP---DLKCWNSMLGAYSQHG 583



 Score =  141 bits (356), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 124/487 (25%), Positives = 214/487 (43%), Gaps = 26/487 (5%)

Query: 8   PRVRTITTLAPTCTSI--VPLSSSLLLDSYCQPNPQL-------NIYSSNRTIDDFVKSG 58
           P   T T+L   C  +  V + SSL        N Q+       N+      +  +   G
Sbjct: 197 PNSSTFTSLVQVCAVLEDVLMGSSL--------NSQIIKLGYSDNVVVQTSVLGMYSSCG 248

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            L SA+++FD +  RD V +N +I G  K    +  L  +  M+  G+  +  T+S VL+
Sbjct: 249 DLESARRIFDCVNNRDAVAWNTMIVGSLKNDKIEDGLMFFRNMLMSGVDPTQFTYSIVLN 308

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            CS  G Y+ G  IH R++      +L + + L+D+Y   G    A  +F  +   NL +
Sbjct: 309 GCSKLGSYSLGKLIHARIIVSDSLADLPLDNALLDMYCSCGDMREAFYVFGRIHNPNLVS 368

Query: 179 WNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           WN ++    E    ++ + MY + ++     P+  +F   +   +       GK LH  V
Sbjct: 369 WNSIISGCSENGFGEQAMLMYRRLLRMSTPRPDEYTFSAAISATAEPERFVHGKLLHGQV 428

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            KLG+ + ++FV   L+  Y        A+K FD +   DV+ W  ++  ++       A
Sbjct: 429 TKLGY-ERSVFVGTTLLSMYFKNREAESAQKVFDVMKERDVVLWTEMIVGHSRLGNSELA 487

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           ++ F  M   + R    S    +   S    +  G+  H    + GFD   + V  AL D
Sbjct: 488 VQFFIEMYREKNRSDGFSLSSVIGACSDMAMLRQGEVFHCLAIRTGFD-CVMSVCGALVD 546

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MYGK    E++  +F  A    L+C NS++ +    G ++ A+  F  +++ G   D VT
Sbjct: 547 MYGKNGKYETAETIFSLASNPDLKCWNSMLGAYSQHGMVEKALSFFEQILENGFMPDAVT 606

Query: 418 LSTTLKALSVSASANLGS--CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
             + L A S   S   G      +    IK+GF+     SC +++  S+ G ++ + ++ 
Sbjct: 607 YLSLLAACSHRGSTLQGKFLWNQMKEQGIKAGFKH---YSC-MVNLVSKAGLVDEALELI 662

Query: 476 EKIPSPN 482
           E+ P  N
Sbjct: 663 EQSPPGN 669


>gi|147790745|emb|CAN61464.1| hypothetical protein VITISV_005683 [Vitis vinifera]
          Length = 785

 Score =  307 bits (787), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 179/602 (29%), Positives = 316/602 (52%), Gaps = 5/602 (0%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A++LFDE+P   ++ +N +I           A+ LY  M+  G++ +  T+  VL  CS 
Sbjct: 62  ARRLFDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSG 121

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                +G++IH      G   ++++ + LVD Y + G  V A  LF  +  R++  WN M
Sbjct: 122 LLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAM 181

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +         D+ +++  +M+ EG+ PN  +   ++        L  GK LH + ++  +
Sbjct: 182 IAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSF 241

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            D  + V   L+D Y+ C  L+ A+K FD + V + +SW++++  Y   D + +ALELF 
Sbjct: 242 -DNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFD 300

Query: 303 RMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           +M L     P+  +    L   ++  ++  G+++H Y+ KLG     + + + L  MY K
Sbjct: 301 QMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYIIKLGXVL-DILLGNTLLSMYAK 359

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C VI+ ++  F+    +     +++++  + +GN   A+ +F  M   GI  D  T+   
Sbjct: 360 CGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGV 419

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A S  A+   G C   H   I  GF ++  +  +L+D YS+CG I  + +VF ++   
Sbjct: 420 LPACSHLAALQHGFCS--HGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMDRH 477

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           ++V + +++ GY  +G+G EAL +   ++  GL PD +TF+C+L+ C+HSG+V EG+L F
Sbjct: 478 DIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITFICLLSSCSHSGLVMEGRLWF 537

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           ++M   + I    +H  CM+D+LGRAG++D+A   ++  P   D  +WS+LL +CR+H N
Sbjct: 538 DAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIRNMPFEPDVRIWSALLSACRIHKN 597

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             +G  V+  +  L P     +  +SN YS  G ++ +  IR T     L +  G S IE
Sbjct: 598 IELGEEVSKKIQSLGPESTGNFVLLSNIYSAAGRWDDAAHIRITQKDWGLKKIPGCSWIE 657

Query: 662 VN 663
           +N
Sbjct: 658 IN 659



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 140/494 (28%), Positives = 252/494 (51%), Gaps = 7/494 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E  + +  +L  C  +   TE  +IH   L      +  +   L  LY+     V A  L
Sbjct: 6   EVKNNYLHLLEACIQSKSLTEAKKIHQHFLKNTSNADSSVLHKLTRLYLSCNQVVLARRL 65

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P  ++  WN ++RA+      D  + +Y+ M   GV PN  ++ ++++ CS  + +
Sbjct: 66  FDEIPNPSVILWNQIIRAYAWNGPFDGAIDLYHSMLHLGVRPNKYTYPFVLKACSGLLAI 125

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           ++G ++HSH    G ++ ++FV  ALVDFY+ CG L+EA++ F  +   DV++WN++++ 
Sbjct: 126 EDGVEIHSHAKMFG-LESDVFVCTALVDFYAKCGILVEAQRLFSSMSHRDVVAWNAMIAG 184

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
            + Y L  DA++L  +MQ     P+  + V  L        +  GK +HGY  +  FD+G
Sbjct: 185 CSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPTVGEAKALGHGKALHGYCVRRSFDNG 244

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            V V + L DMY KC  +  +  +F+    R+    ++++   + S  +K+A+E+F  M+
Sbjct: 245 VV-VGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSWSAMIGGYVXSDCMKEALELFDQMI 303

Query: 408 -DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             + +    VTL + L+A   +   +L   R LHC  IK G   +I +  +L+  Y++CG
Sbjct: 304 LKDAMDPTPVTLGSVLRA--CAKLTDLSRGRKLHCYIIKLGXVLDILLGNTLLSMYAKCG 361

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            I+ + + F+ +   + V F++I++G  +NG    AL +  +M   G+ PD  T L VL 
Sbjct: 362 VIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVALSIFRMMQLSGIDPDLTTMLGVLP 421

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H   ++ G    +    V G   D    + +IDM  + G +  A E+  +     D 
Sbjct: 422 ACSHLAALQHG-FCSHGYLIVRGFATDTLICNALIDMYSKCGKISFAREVFNRMD-RHDI 479

Query: 587 MMWSSLLRSCRVHG 600
           + W++++    +HG
Sbjct: 480 VSWNAMIIGYGIHG 493



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 230/497 (46%), Gaps = 10/497 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T   +   C+ ++ +   + + S+ +    + +++     +D + K G 
Sbjct: 100 MLHLGVRPNKYTYPFVLKACSGLLAIEDGVEIHSHAKMFGLESDVFVCTALVDFYAKCGI 159

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A++LF  M  RD+V +N +I+GC  +     A+ L  +M   GI  ++ST   VL  
Sbjct: 160 LVEAQRLFSSMSHRDVVAWNAMIAGCSLYGLCDDAVQLIMQMQEEGICPNSSTIVGVLPT 219

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
              A     G  +H   +   F   + +G+ L+D+Y +    + A  +FD +  RN  +W
Sbjct: 220 VGEAKALGHGKALHGYCVRRSFDNGVVVGTGLLDMYAKCQCLLYARKIFDVMGVRNEVSW 279

Query: 180 NLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           + M+  +       E L ++++M   + ++P  ++   ++R C+    L  G++LH ++I
Sbjct: 280 SAMIGGYVXSDCMKEALELFDQMILKDAMDPTPVTLGSVLRACAKLTDLSRGRKLHCYII 339

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           KLG V ++I + N L+  Y+ CG + +A + FD +   D +S+++IVS          AL
Sbjct: 340 KLGXV-LDILLGNTLLSMYAKCGVIDDAIRFFDXMNPKDSVSFSAIVSGCVQNGNAAVAL 398

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            +F  MQL    P + + +  L   S    +  G   HGY+   GF   ++ + +AL DM
Sbjct: 399 SIFRMMQLSGIDPDLTTMLGVLPACSHLAALQHGFCSHGYLIVRGFATDTL-ICNALIDM 457

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y KC  I  +  VF       +   N+++      G   +A+ +F  ++  G+  D++T 
Sbjct: 458 YSKCGKISFAREVFNRMDRHDIVSWNAMIIGYGIHGLGMEALGLFHDLLALGLKPDDITF 517

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMDAYSRCGHIELSHQVFE 476
              L + S S     G    L   A+   F     +     ++D   R G I+ +H    
Sbjct: 518 ICLLSSCSHSGLVMEGR---LWFDAMSRDFSIVPRMEHCICMVDILGRAGLIDEAHHFIR 574

Query: 477 KIP-SPNVVCFTSIMNG 492
            +P  P+V  ++++++ 
Sbjct: 575 NMPFEPDVRIWSALLSA 591


>gi|224117876|ref|XP_002317690.1| predicted protein [Populus trichocarpa]
 gi|222860755|gb|EEE98302.1| predicted protein [Populus trichocarpa]
          Length = 706

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 183/665 (27%), Positives = 346/665 (52%), Gaps = 5/665 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T   +   CT +  +    ++ D   +    L+++ ++  I  +  +G 
Sbjct: 1   MLGCGVFPDKYTFPPVIKCCTGLNNVRLGKVIQDMILEMGFDLDMFVASSLIKLYADNGC 60

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A++ FD+M  +D V +N++I+G  +      A+ L+ +M+S   K  + TF+ VLS+
Sbjct: 61  IEDARRFFDKMIDKDCVLWNVMINGYVQCGESDSAIKLFKDMMSSEAKPDSVTFACVLSI 120

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
             +      G Q+H  V+  G      +G+ LV +Y +      A  LFD +P+ +L  W
Sbjct: 121 SCSEAMVEYGRQLHGLVVRSGLDFVPLVGNTLVTVYSKGRQLGDARKLFDMMPQIDLVVW 180

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + +    D+   ++N+M + G++P+ ++F   +   +    L + K++H ++++
Sbjct: 181 NRMIGGYVQNGFMDDASMLFNEMISAGIKPDSITFTSFLPSLAESSSLKQIKEIHGYIVR 240

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G V +++++ +AL+D Y  C   + A K F+     D++ + +++S Y    +  DALE
Sbjct: 241 HG-VILDVYLNSALIDLYFKCRDAVMACKMFNLSTKFDIVIYTAMISGYVLNGMNKDALE 299

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  +   +  P+  +F   L   +    +  G+++HGY+ K   +     V SA+ +MY
Sbjct: 300 IFRWLLQKKMIPNALTFSSILPACAGLAAIKLGRELHGYIIKNELEE-KCPVGSAIMNMY 358

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  ++ +  +F     +   C NS++TS    G  ++A+ +F  M  EG+  D VT+S
Sbjct: 359 AKCGRLDLAHLIFGRISIKDAICWNSIITSFSQDGKPEEAIYLFRQMGMEGVKYDCVTVS 418

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A +   + + G  + +H   IK  FES++    +L++ Y++CG + ++  VF  + 
Sbjct: 419 AALSACANIPALHYG--KEIHGFMIKGAFESDLFDMSALINMYAKCGKLNIARLVFNLMQ 476

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             N V + SI+  Y  +G   ++L +   M++ G+ PD +TFL +L+ C H+G V++G  
Sbjct: 477 EKNEVAWNSIIAAYGYHGYLADSLALFHNMLEEGIQPDHITFLTILSSCGHAGQVEDGVR 536

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F  M   YGI A  +HY+CM D+ GRAG LD+A E++   P      +W +LL +CRVH
Sbjct: 537 YFRCMTEEYGIPAQMEHYACMADLFGRAGHLDEAFEVITSMPFPPAASVWGTLLGACRVH 596

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
           GN  +    +  L++LEP +   Y  +++  ++ G++    +I+     R + +  G S 
Sbjct: 597 GNVELAEVASRYLLDLEPKNSGYYLLLTHVLADAGKWRSVHKIQHLMKERGVQKVPGCSW 656

Query: 660 IEVNS 664
           IEVN+
Sbjct: 657 IEVNN 661


>gi|4049345|emb|CAA22570.1| putative protein [Arabidopsis thaliana]
 gi|7270147|emb|CAB79960.1| putative protein [Arabidopsis thaliana]
          Length = 688

 Score =  307 bits (786), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 324/617 (52%), Gaps = 12/617 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  +  + K+G  ++A  +F+ +   D+V++N ++SG   F   + AL     M S G+
Sbjct: 39  SNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSG---FDDNQIALNFVVRMKSAGV 95

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
              A T+S+ LS C  +  +  G+Q+   V+  G   +L +G+  + +Y R G    A  
Sbjct: 96  VFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARR 155

Query: 167 LFDELPERNLATWNLMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           +FDE+  +++ +WN +L     E +   E + ++  M  EGVE + +SF  ++  C    
Sbjct: 156 VFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHET 215

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L   +Q+H   IK G+  + + V N L+  YS CG L   K  F  +   +V+SW +++
Sbjct: 216 DLKLARQIHGLCIKRGYESL-LEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMI 274

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S   D     DA+ +F  M+     P+  +FV  +N       +  G +IHG   K GF 
Sbjct: 275 SSNKD-----DAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGF- 328

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
                V ++   +Y K   +E +   FE    R +   N++++    +G   +A++MF  
Sbjct: 329 VSEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLS 388

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
              E +  +E T  + L A++ +   ++   +  H   +K G  S   VS +L+D Y++ 
Sbjct: 389 AAAETMP-NEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKR 447

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G+I+ S +VF ++   N   +TSI++ YS +G     +++   MI+  + PD VTFL VL
Sbjct: 448 GNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVL 507

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             CN  GMV +G  +FN M  VY ++   +HYSCM+DMLGRAG L +AEEL+ + PGG  
Sbjct: 508 TACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPG 567

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             M  S+L SCR+HGN  +G +VA + ME++P     Y Q+ N Y+E  E++ + +IR+ 
Sbjct: 568 ESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKA 627

Query: 646 ALARKLTRDIGHSLIEV 662
              + ++++ G S I+V
Sbjct: 628 MRKKNVSKEAGFSWIDV 644



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/327 (25%), Positives = 151/327 (46%), Gaps = 15/327 (4%)

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++ C  ++ C     L  G Q+H      G+    + V+NA++  Y   G    A   F+
Sbjct: 4   VTLCLALKACRGD--LKRGCQIHGFSTTSGFTSF-VCVSNAVMGMYRKAGRFDNALCIFE 60

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +   DV+SWN+I+S + D  +   AL    RM+         ++   L+F   +     
Sbjct: 61  NLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFLL 117

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G Q+   V K G +   V V ++   MY +      +  VF+    + +   NSL++ L 
Sbjct: 118 GLQLQSTVVKTGLESDLV-VGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLSGLS 176

Query: 392 HSGNIK-DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
             G    +AV +F  M+ EG+ LD V+ ++ +   +     +L   R +H   IK G+ES
Sbjct: 177 QEGTFGFEAVVIFRDMMREGVELDHVSFTSVIT--TCCHETDLKLARQIHGLCIKRGYES 234

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
            + V   LM  YS+CG +E    VF ++   NVV +T++++         +A+ +   M 
Sbjct: 235 LLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNK-----DDAVSIFLNMR 289

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEG 537
             G+ P++VTF+ ++     +  +KEG
Sbjct: 290 FDGVYPNEVTFVGLINAVKCNEQIKEG 316



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 59/217 (27%), Positives = 100/217 (46%), Gaps = 20/217 (9%)

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           +DEVTL   LKA       +L     +H  +  SGF S + VS ++M  Y + G  + + 
Sbjct: 1   MDEVTLCLALKA----CRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFDNAL 56

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            +FE +  P+VV + +I++G+  N +   AL+ +  M   G++ D  T+   L+ C  S 
Sbjct: 57  CIFENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGS- 112

Query: 533 MVKEGQLVFNSMKSVY---GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
              EG L+   ++S     G+++D    +  I M  R+G    A  +  +     D + W
Sbjct: 113 ---EGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMS-FKDMISW 168

Query: 590 SSLLRSCRVHGN-----EIIGRRVANILMELEPVDFA 621
           +SLL      G       +I R +    +EL+ V F 
Sbjct: 169 NSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFT 205


>gi|449443608|ref|XP_004139569.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 878

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/615 (29%), Positives = 335/615 (54%), Gaps = 8/615 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K+      + +FDEM  +++V++  L+SG  +     + ++L ++M   G+  + 
Sbjct: 146 VDMYMKTEDFEDGRGIFDEMGIKNVVSWTSLLSGYARNGLNDEVIHLINQMQMEGVNPNG 205

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF++VL   ++      G+Q+H  ++  GF    ++ + L+ +Y++      A  +FD 
Sbjct: 206 FTFATVLGALADESIIEGGVQVHAMIVKNGFEFTTFVCNALICMYLKSEMVGDAEAVFDS 265

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  R+  TWN+M+  +  +    E  +M+++M+  GV+ +   FC  ++ CS    L+  
Sbjct: 266 MVVRDSVTWNIMIGGYAAIGFYLEGFQMFHRMRLAGVKLSRTVFCTALKLCSQQRELNFT 325

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYA 289
           KQLH  V+K G+ +    +  AL+  YS C S+ EA K F       +V++W +++  + 
Sbjct: 326 KQLHCGVVKNGY-EFAQDIRTALMVTYSKCSSVDEAFKLFSMADAAHNVVTWTAMIGGFV 384

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
             +    A++LF +M     RP+  ++   L  A +  ++    Q+H  + K  ++    
Sbjct: 385 QNNNNEKAVDLFCQMSREGVRPNHFTYSTVL--AGKPSSLL--SQLHAQIIKAYYEKVP- 439

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V +AL D Y K   +  S  VF S P + +   ++++T L  + + + A+E+F  +V E
Sbjct: 440 SVATALLDAYVKTGNVVESARVFYSIPAKDIVAWSAMLTGLAQTRDSEKAMEVFIQLVKE 499

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+  +E T S+ + A S SA A +   + +H  A+KSG  + + VS +L+  YS+ G+IE
Sbjct: 500 GVKPNEYTFSSVINACSSSA-ATVEHGKQIHATAVKSGKSNALCVSSALLTMYSKKGNIE 558

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            + +VF +    ++V + S++ GY ++G  ++AL++ ++M  +GL  D VTF+ VL  C 
Sbjct: 559 SAEKVFTRQEERDIVSWNSMITGYGQHGDAKKALEVFQIMQNQGLPLDDVTFIGVLTACT 618

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+G+V+EG+  FN M   Y ID   +HYSCM+D+  RAG+ DKA +++   P      +W
Sbjct: 619 HAGLVEEGEKYFNIMIKDYHIDKKIEHYSCMVDLYSRAGMFDKAMDIINGMPFPASPTIW 678

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +CRVH N  +G+  A  L+ L+P D   Y  +SN ++  G +E    +R+    R
Sbjct: 679 RTLLAACRVHRNLELGKLAAEKLVSLQPNDAVGYVLLSNIHAVAGNWEEKAHVRKLMDER 738

Query: 650 KLTRDIGHSLIEVNS 664
           K+ ++ G S IE+ +
Sbjct: 739 KVKKEAGCSWIEIKN 753



 Score =  235 bits (599), Expect = 7e-59,   Method: Compositional matrix adjust.
 Identities = 164/617 (26%), Positives = 306/617 (49%), Gaps = 45/617 (7%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A +LFDE P +D+  YN L+    +  H ++AL+L+ ++ S G+     T S  L VC  
Sbjct: 57  AHQLFDETPLKDISHYNRLLFDFSRNNHDREALHLFKDLHSSGLGVDGLTLSCALKVCGV 116

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G Q+HC+ L  GF  ++ +G+ LVD+YM+         +FDE+  +N+ +W  +
Sbjct: 117 LFDQVVGRQVHCQSLKSGFLEDVSVGTSLVDMYMKTEDFEDGRGIFDEMGIKNVVSWTSL 176

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           L  +      DEV+ + N+M+ EGV PNG +F  ++   +   +++ G Q+H+ ++K G+
Sbjct: 177 LSGYARNGLNDEVIHLINQMQMEGVNPNGFTFATVLGALADESIIEGGVQVHAMIVKNGF 236

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            +   FV NAL+  Y     + +A+  FD + V D ++WN ++  YA      +  ++F 
Sbjct: 237 -EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFH 295

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           RM+L   + S   F   L   S+   + F KQ+H  V K G++     +++AL   Y KC
Sbjct: 296 RMRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQ-DIRTALMVTYSKC 354

Query: 363 NVIESSVAVFESA-PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           + ++ +  +F  A    ++    +++   + + N + AV++F  M  EG+  +  T ST 
Sbjct: 355 SSVDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTV 414

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L     S  +       LH   IK+ +E   +V+ +L+DAY + G++  S +VF  IP+ 
Sbjct: 415 LAGKPSSLLSQ------LHAQIIKAYYEKVPSVATALLDAYVKTGNVVESARVFYSIPAK 468

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN------------ 529
           ++V +++++ G ++     +A+++   +++ G+ P++ TF  V+  C+            
Sbjct: 469 DIVAWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQI 528

Query: 530 HSGMVKEGQ----LVFNSMKSVYGIDAD---------RQH------YSCMIDMLGRAGIL 570
           H+  VK G+     V +++ ++Y    +         RQ       ++ MI   G+ G  
Sbjct: 529 HATAVKSGKSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDA 588

Query: 571 DKAEELLQQTPGGG---DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV--YSQ 625
            KA E+ Q     G   D + +  +L +C   G    G +  NI+++   +D  +  YS 
Sbjct: 589 KKALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGEKYFNIMIKDYHIDKKIEHYSC 648

Query: 626 VSNFYSEIGEFEVSMQI 642
           + + YS  G F+ +M I
Sbjct: 649 MVDLYSRAGMFDKAMDI 665



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 120/443 (27%), Positives = 208/443 (46%), Gaps = 9/443 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +   +  N  I  ++KS  +  A+ +FD M  RD VT+N++I G        +   ++  
Sbjct: 237 EFTTFVCNALICMYLKSEMVGDAEAVFDSMVVRDSVTWNIMIGGYAAIGFYLEGFQMFHR 296

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G+K S + F + L +CS         Q+HC V+  G+     I + L+  Y +   
Sbjct: 297 MRLAGVKLSRTVFCTALKLCSQQRELNFTKQLHCGVVKNGYEFAQDIRTALMVTYSKCSS 356

Query: 161 SVRALDLFDEL-PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
              A  LF       N+ TW  M+  F + +  ++ + ++ +M  EGV PN  ++  ++ 
Sbjct: 357 VDEAFKLFSMADAAHNVVTWTAMIGGFVQNNNNEKAVDLFCQMSREGVRPNHFTYSTVLA 416

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           G    +L     QLH+ +IK  +  V   VA AL+D Y   G+++E+ + F  IP  D++
Sbjct: 417 GKPSSLL----SQLHAQIIKAYYEKVPS-VATALLDAYVKTGNVVESARVFYSIPAKDIV 471

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGY 338
           +W+++++  A       A+E+F ++     +P+  +F   +N  +S    V  GKQIH  
Sbjct: 472 AWSAMLTGLAQTRDSEKAMEVFIQLVKEGVKPNEYTFSSVINACSSSAATVEHGKQIHAT 531

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K G    ++ V SAL  MY K   IES+  VF     R +   NS++T     G+ K 
Sbjct: 532 AVKSG-KSNALCVSSALLTMYSKKGNIESAEKVFTRQEERDIVSWNSMITGYGQHGDAKK 590

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+E+F  M ++G+ LD+VT    L A + +     G  +  +        +  I     +
Sbjct: 591 ALEVFQIMQNQGLPLDDVTFIGVLTACTHAGLVEEGE-KYFNIMIKDYHIDKKIEHYSCM 649

Query: 459 MDAYSRCGHIELSHQVFEKIPSP 481
           +D YSR G  + +  +   +P P
Sbjct: 650 VDLYSRAGMFDKAMDIINGMPFP 672


>gi|255577487|ref|XP_002529622.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223530907|gb|EEF32767.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 752

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 182/627 (29%), Positives = 335/627 (53%), Gaps = 8/627 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q + +  N  ++ +VK   L+ A+K+FD M  R+ +T+  LI G  +    + A  +  +
Sbjct: 99  QDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLEDNDFQSAFSIAGD 158

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G   +  T + +L  CS+      G QIHC V+  GF  N+++G+ L+ +Y + G 
Sbjct: 159 MHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGFDENVFVGTSLIAMYTKSGF 218

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +  +++   N M+  +       + + ++  +  +G EP   +F  ++  
Sbjct: 219 FDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDGFEPTDYTFTNIIST 278

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+  + ++EGKQL     K G++     V NA++  Y   G   EA++ F  +   ++IS
Sbjct: 279 CNGDLGVEEGKQLQGLAFKYGFLS-ETSVGNAIITMYGNSGMPKEAERMFSSMSEKNLIS 337

Query: 281 WNSIVSIYADYDLIFDALELFFRM--QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           W +++S Y+       A++ F  +  +L     S       L+  S   N+  G QIHG+
Sbjct: 338 WTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTL-LTAILDCCSDCNNLELGLQIHGF 396

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS-GNIK 397
           V KLG     V+V +AL D+Y KC  ++S+  VF+    + +   N+++   L S G+ +
Sbjct: 397 VMKLGC-ACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFNAILAGFLESSGDEE 455

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           D + +F  +   G+  D VT S  L  L+  AS   G  R  H   +K+GF++NI+V+ S
Sbjct: 456 DPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKG--RSFHAYTVKTGFDTNISVANS 513

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           ++  Y++CG IE +HQ+F  +   + + + ++++ Y+ +G  +++L + E M ++G  PD
Sbjct: 514 VISMYAKCGSIEDAHQMFNIMNCRDSISWNALISAYALHGQAQKSLFLFEEMKRKGFDPD 573

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           + T L +L  C +SG+ K+G  +FN M+  YGI    +HY+CM D+LGRAG L +A +++
Sbjct: 574 EFTILAILQACTYSGLWKDGICLFNLMEPKYGIKPLLEHYACMADLLGRAGYLSEAMDII 633

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           +++P     ++W +L+  C++HGN   G+  +  L++L PV+   Y  VSN Y+     +
Sbjct: 634 KRSPFPKSTLLWRTLVNVCKLHGNLNFGKLASKHLLDLSPVEAGSYILVSNMYASEKMSD 693

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
            + ++R+     K  ++ G S IE+++
Sbjct: 694 EAAKVRKVMNDLKFRKEAGSSWIEIDN 720



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 112/474 (23%), Positives = 219/474 (46%), Gaps = 8/474 (1%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  +H  ++  G   + + G+ +++LY++      A  +FD +  RN  TW  +++ + E
Sbjct: 86  GQAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLE 145

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
            +       +   M   G   N  +   +++ CS       G+Q+H  VIK G+ D N+F
Sbjct: 146 DNDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKSGF-DENVF 204

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V  +L+  Y+  G    A+K FD +   D+   N ++  Y        A+E+F  +    
Sbjct: 205 VGTSLIAMYTKSGFFDVAEKVFDSMGFKDIRCLNFMILEYGRAGNGGKAIEVFKNLLNDG 264

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
             P+  +F   ++  +    V  GKQ+ G   K GF      V +A+  MYG   + + +
Sbjct: 265 FEPTDYTFTNIISTCNGDLGVEEGKQLQGLAFKYGF-LSETSVGNAIITMYGNSGMPKEA 323

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSV 427
             +F S   ++L    +L++    SG  K AV+ F  + DE GI  D   L+  L   S 
Sbjct: 324 ERMFSSMSEKNLISWTALISGYSRSGYGKKAVDAFLGLHDELGINFDSTLLTAILDCCSD 383

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             +  LG    +H   +K G   ++ V+ +L+D Y++C  ++ +  VF+ + +  +  F 
Sbjct: 384 CNNLELG--LQIHGFVMKLGCACDVNVATALVDLYAKCEKLQSARIVFDHLSNKGIASFN 441

Query: 488 SIMNGY-SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           +I+ G+   +G   + + +   +   G+ PD VTF  +L+   +   +++G+  F++   
Sbjct: 442 AILAGFLESSGDEEDPMILFNQLRLAGVKPDMVTFSRLLSLLANQASLEKGR-SFHAYTV 500

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
             G D +    + +I M  + G ++ A ++        D + W++L+ +  +HG
Sbjct: 501 KTGFDTNISVANSVISMYAKCGSIEDAHQMF-NIMNCRDSISWNALISAYALHG 553



 Score = 38.9 bits (89), Expect = 8.0,   Method: Compositional matrix adjust.
 Identities = 42/202 (20%), Positives = 94/202 (46%), Gaps = 8/202 (3%)

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           + +H   +K+G + +     ++++ Y +   ++L+ +VF+++ + N + +TS++ GY  +
Sbjct: 87  QAVHSYLVKAGSQDDTFKGNNVLNLYVKFNRLDLAQKVFDRMRTRNTITWTSLIKGYLED 146

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQ 555
              + A  +   M + G   ++ T   +L  C+       G+ +    +KS  G D +  
Sbjct: 147 NDFQSAFSIAGDMHKFGENFNEHTCTVILQACSSPDDRILGEQIHCFVIKS--GFDENVF 204

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGD--CMMWSSLLRSCRVHGNEIIGRRVANILM 613
             + +I M  ++G  D AE++     G  D  C+ +  L      +G + I     N+L 
Sbjct: 205 VGTSLIAMYTKSGFFDVAEKVFDSM-GFKDIRCLNFMILEYGRAGNGGKAI-EVFKNLLN 262

Query: 614 E-LEPVDFAVYSQVSNFYSEIG 634
           +  EP D+   + +S    ++G
Sbjct: 263 DGFEPTDYTFTNIISTCNGDLG 284


>gi|297833652|ref|XP_002884708.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330548|gb|EFH60967.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1028

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 332/622 (53%), Gaps = 6/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NIY  +  +  + K   + +A K+F+ +  R+ V +N +I G        + + L+ +M 
Sbjct: 361 NIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMK 420

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           S G      TF+S+LS C+ +     G Q H  ++      NL++G+ LVD+Y + G   
Sbjct: 421 SSGYNIDDFTFTSLLSTCAVSHDLEMGSQFHSIIIKKKLTKNLFVGNALVDMYAKCGALE 480

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F+ + +R+  +WN ++  + +     E   ++ +M + G+  +G      ++ C+
Sbjct: 481 DARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKACT 540

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L +GKQ+H   +K G +D  +   ++L+D YS CG + +A+K F  +P   V+S N
Sbjct: 541 NVHGLYQGKQVHCLSVKCG-LDRVLHTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMN 599

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y+  +L  +A+ LF  M      PS  +F   +    +  ++  G Q HG + K 
Sbjct: 600 ALIAGYSQNNLE-EAVVLFQEMLTKGVNPSEITFATIVEACHKPESLTLGTQFHGQIIKW 658

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           GF     ++  +L  +Y     +  + A+F E +  +S+     +M+    +G  ++A++
Sbjct: 659 GFSSEGEYLGISLLGLYMNSRRMAEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALK 718

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +  M  +G   D+ T  T L+  SV +S   G  R +H        + +   S +L+D 
Sbjct: 719 FYKEMRHDGALPDQATFVTVLRVCSVLSSLREG--RAIHSLIFHLAHDLDELTSNTLIDM 776

Query: 462 YSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           Y++CG ++ S QVF+++    NVV + S++NGY++NG   +AL + + M Q  ++PD++T
Sbjct: 777 YAKCGDMKSSSQVFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEIT 836

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL  C+H+G V +G+ +F  M   YGI+A   H +CM+D+LGR G L +A++ ++  
Sbjct: 837 FLGVLTACSHAGKVSDGRKIFEMMIGQYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQ 896

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
               D  +WSSLL +CR+HG+++ G   A  L+ELEP + + Y  +SN Y+  G +E + 
Sbjct: 897 NLKPDARLWSSLLGACRIHGDDMRGEIAAERLIELEPQNSSAYVLLSNIYASQGRWEEAN 956

Query: 641 QIRETALARKLTRDIGHSLIEV 662
            +R+    R + +  G+S I+V
Sbjct: 957 ALRKAMRDRGVKKVPGYSWIDV 978



 Score =  265 bits (676), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 168/546 (30%), Positives = 280/546 (51%), Gaps = 8/546 (1%)

Query: 50  TIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            I+ ++  G L  A+ LF EMP+ D+V +N++ISG GK      A+  +  M    +K +
Sbjct: 267 VINTYISLGKLKDARLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKST 326

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            ST  SVLS          G+ +H   + LG   N+Y+GS LV +Y +      A  +F+
Sbjct: 327 RSTLGSVLSAIGIVANLDLGLVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFE 386

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            L ERN   WN M+R +       +V+ ++  MK+ G   +  +F  ++  C++   L+ 
Sbjct: 387 ALEERNDVLWNAMIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEM 446

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G Q HS +IK   +  N+FV NALVD Y+ CG+L +A++ F+ +   D +SWN+I+  Y 
Sbjct: 447 GSQFHSIIIKKK-LTKNLFVGNALVDMYAKCGALEDARQIFEHMCDRDNVSWNTIIGGYV 505

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
             +   +A +LF RM  C            L   +    +Y GKQ+H    K G D   +
Sbjct: 506 QDENESEAFDLFMRMNSCGIVSDGACLASTLKACTNVHGLYQGKQVHCLSVKCGLDR-VL 564

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
           H  S+L DMY KC +IE +  VF S P  S+   N+L+     + N+++AV +F  M+ +
Sbjct: 565 HTGSSLIDMYSKCGIIEDARKVFSSMPEWSVVSMNALIAGYSQN-NLEEAVVLFQEMLTK 623

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA-VSCSLMDAYSRCGHI 468
           G+   E+T +T ++A     S  LG+    H   IK GF S    +  SL+  Y     +
Sbjct: 624 GVNPSEITFATIVEACHKPESLTLGT--QFHGQIIKWGFSSEGEYLGISLLGLYMNSRRM 681

Query: 469 ELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
             +  +F ++ SP ++V +T +M+G+S+NG   EAL   + M   G +PD+ TF+ VL  
Sbjct: 682 AEACALFSELSSPKSIVLWTGMMSGHSQNGFYEEALKFYKEMRHDGALPDQATFVTVLRV 741

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+    ++EG+ + +S+      D D    + +IDM  + G +  + ++  +     + +
Sbjct: 742 CSVLSSLREGRAI-HSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQVFDEMRRRSNVV 800

Query: 588 MWSSLL 593
            W+SL+
Sbjct: 801 SWNSLI 806



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 133/535 (24%), Positives = 240/535 (44%), Gaps = 43/535 (8%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +D + K   ++ A+K F+ +  +D+  +N ++S       P + L  +  +  + I 
Sbjct: 99  NAIVDLYAKCAQVSYAEKQFNSLE-KDVTAWNSMLSMYSSIGQPGKVLRSFVSLFENLIF 157

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TFS VLS  +       G QIHC ++ +G   N Y G  LVD+Y +      A  +
Sbjct: 158 PNKFTFSIVLSTSARETNVEFGRQIHCSMIKMGLERNSYCGGALVDMYAKCDRLGDAQRV 217

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD + + N   W  +   + +   P+E + ++ +M+ EG  P+ L+F             
Sbjct: 218 FDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEGHRPDHLAFV------------ 265

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
                                    +++ Y + G L +A+  F  +P  DV++WN ++S 
Sbjct: 266 ------------------------TVINTYISLGKLKDARLLFGEMPSPDVVAWNVMISG 301

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +        A+E F  M+    + +  +    L+      N+  G  +H    KLG    
Sbjct: 302 HGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIVANLDLGLVVHAEAIKLGL-AS 360

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +++V S+L  MY KC  +E++  VFE+   R+    N+++    H+G     +E+F  M 
Sbjct: 361 NIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNAMIRGYAHNGESHKVMELFMDMK 420

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             G  +D+ T ++ L   +VS    +GS    H   IK     N+ V  +L+D Y++CG 
Sbjct: 421 SSGYNIDDFTFTSLLSTCAVSHDLEMGS--QFHSIIIKKKLTKNLFVGNALVDMYAKCGA 478

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +E + Q+FE +   + V + +I+ GY ++    EA D+   M   G++ D       L  
Sbjct: 479 LEDARQIFEHMCDRDNVSWNTIIGGYVQDENESEAFDLFMRMNSCGIVSDGACLASTLKA 538

Query: 528 C-NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           C N  G+ +  Q+   S+K   G+D      S +IDM  + GI++ A ++    P
Sbjct: 539 CTNVHGLYQGKQVHCLSVKC--GLDRVLHTGSSLIDMYSKCGIIEDARKVFSSMP 591



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 112/451 (24%), Positives = 203/451 (45%), Gaps = 41/451 (9%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  +H + L LG      +G+ +VDLY +      A   F+ L E+++  WN ML  +  
Sbjct: 79  GKAVHSKSLILGIDSEGRLGNAIVDLYAKCAQVSYAEKQFNSL-EKDVTAWNSMLSMYSS 137

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
           + +P +VLR +  +    + PN  +F  ++   +    ++ G+Q+H  +IK+G ++ N +
Sbjct: 138 IGQPGKVLRSFVSLFENLIFPNKFTFSIVLSTSARETNVEFGRQIHCSMIKMG-LERNSY 196

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
              ALVD Y+ C  L +A++ FD I   + + W  + S Y    L  +A+ +F RM+   
Sbjct: 197 CGGALVDMYAKCDRLGDAQRVFDGIVDPNTVCWTCLFSGYVKAGLPEEAVIVFERMRGEG 256

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            RP   +FV  +N                                     Y     ++ +
Sbjct: 257 HRPDHLAFVTVIN------------------------------------TYISLGKLKDA 280

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F   P   +   N +++     G    A+E F  M    +     TL + L A+ + 
Sbjct: 281 RLLFGEMPSPDVVAWNVMISGHGKRGCEIVAIEYFLNMRKSSVKSTRSTLGSVLSAIGIV 340

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           A+ +LG   ++H  AIK G  SNI V  SL+  YS+C  +E + +VFE +   N V + +
Sbjct: 341 ANLDLG--LVVHAEAIKLGLASNIYVGSSLVSMYSKCEKMEAAAKVFEALEERNDVLWNA 398

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY+ NG   + +++   M   G   D  TF  +L+ C  S  ++ G   F+S+    
Sbjct: 399 MIRGYAHNGESHKVMELFMDMKSSGYNIDDFTFTSLLSTCAVSHDLEMGSQ-FHSIIIKK 457

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            +  +    + ++DM  + G L+ A ++ + 
Sbjct: 458 KLTKNLFVGNALVDMYAKCGALEDARQIFEH 488



 Score = 62.4 bits (150), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 93/194 (47%), Gaps = 11/194 (5%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           LP   T  T+   C+ +  L     + S        L+  +SN  ID + K G + S+ +
Sbjct: 729 LPDQATFVTVLRVCSVLSSLREGRAIHSLIFHLAHDLDELTSNTLIDMYAKCGDMKSSSQ 788

Query: 66  LFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           +FDEM  R ++V++N LI+G  K  + + AL ++D M    I     TF  VL+ CS+AG
Sbjct: 789 VFDEMRRRSNVVSWNSLINGYAKNGYAEDALKIFDSMRQSHIMPDEITFLGVLTACSHAG 848

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDEL---PERNLATW 179
             ++G +I   ++   +G+   +   + +VDL  R G    A D  +     P+  L  W
Sbjct: 849 KVSDGRKIFEMMIG-QYGIEARVDHVACMVDLLGRWGYLQEADDFIEAQNLKPDARL--W 905

Query: 180 NLMLRAFCELSRPD 193
           + +L A C +   D
Sbjct: 906 SSLLGA-CRIHGDD 918


>gi|30689384|ref|NP_194969.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75147159|sp|Q84MA3.1|PP345_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g32430, mitochondrial; Flags: Precursor
 gi|30102674|gb|AAP21255.1| At4g32430 [Arabidopsis thaliana]
 gi|110742925|dbj|BAE99358.1| hypothetical protein [Arabidopsis thaliana]
 gi|332660658|gb|AEE86058.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 763

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 324/617 (52%), Gaps = 12/617 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  +  + K+G  ++A  +F+ +   D+V++N ++SG   F   + AL     M S G+
Sbjct: 114 SNAVMGMYRKAGRFDNALCIFENLVDPDVVSWNTILSG---FDDNQIALNFVVRMKSAGV 170

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
              A T+S+ LS C  +  +  G+Q+   V+  G   +L +G+  + +Y R G    A  
Sbjct: 171 VFDAFTYSTALSFCVGSEGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARR 230

Query: 167 LFDELPERNLATWNLMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           +FDE+  +++ +WN +L     E +   E + ++  M  EGVE + +SF  ++  C    
Sbjct: 231 VFDEMSFKDMISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVITTCCHET 290

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L   +Q+H   IK G+  + + V N L+  YS CG L   K  F  +   +V+SW +++
Sbjct: 291 DLKLARQIHGLCIKRGYESL-LEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMI 349

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S   D     DA+ +F  M+     P+  +FV  +N       +  G +IHG   K GF 
Sbjct: 350 SSNKD-----DAVSIFLNMRFDGVYPNEVTFVGLINAVKCNEQIKEGLKIHGLCIKTGFV 404

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
                V ++   +Y K   +E +   FE    R +   N++++    +G   +A++MF  
Sbjct: 405 -SEPSVGNSFITLYAKFEALEDAKKAFEDITFREIISWNAMISGFAQNGFSHEALKMFLS 463

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
              E +  +E T  + L A++ +   ++   +  H   +K G  S   VS +L+D Y++ 
Sbjct: 464 AAAETMP-NEYTFGSVLNAIAFAEDISVKQGQRCHAHLLKLGLNSCPVVSSALLDMYAKR 522

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G+I+ S +VF ++   N   +TSI++ YS +G     +++   MI+  + PD VTFL VL
Sbjct: 523 GNIDESEKVFNEMSQKNQFVWTSIISAYSSHGDFETVMNLFHKMIKENVAPDLVTFLSVL 582

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             CN  GMV +G  +FN M  VY ++   +HYSCM+DMLGRAG L +AEEL+ + PGG  
Sbjct: 583 TACNRKGMVDKGYEIFNMMIEVYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPG 642

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             M  S+L SCR+HGN  +G +VA + ME++P     Y Q+ N Y+E  E++ + +IR+ 
Sbjct: 643 ESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEEWDKAAEIRKA 702

Query: 646 ALARKLTRDIGHSLIEV 662
              + ++++ G S I+V
Sbjct: 703 MRKKNVSKEAGFSWIDV 719



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 174/390 (44%), Gaps = 20/390 (5%)

Query: 154 LYMRM-GPSVRALDLFDELPERNLAT-WNLMLRAFCELSRPDEVLRMYN---KMKAEGVE 208
           L+ R   P   A  LFD   +RN  T  N  +      + P   L ++    ++   G  
Sbjct: 16  LFQRFYSPYRIAHKLFDGSSQRNATTSINHSISESLRRNSPARALSIFKENLQLGYFGRH 75

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            + ++ C  ++ C     L  G Q+H      G+    + V+NA++  Y   G    A  
Sbjct: 76  MDEVTLCLALKACRGD--LKRGCQIHGFSTTSGFTSF-VCVSNAVMGMYRKAGRFDNALC 132

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F+ +   DV+SWN+I+S + D  +   AL    RM+         ++   L+F   +  
Sbjct: 133 IFENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSEG 189

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
              G Q+   V K G +   V V ++   MY +      +  VF+    + +   NSL++
Sbjct: 190 FLLGLQLQSTVVKTGLESDLV-VGNSFITMYSRSGSFRGARRVFDEMSFKDMISWNSLLS 248

Query: 389 SLLHSGNIK-DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
            L   G    +AV +F  M+ EG+ LD V+ ++ +   +     +L   R +H   IK G
Sbjct: 249 GLSQEGTFGFEAVVIFRDMMREGVELDHVSFTSVIT--TCCHETDLKLARQIHGLCIKRG 306

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           +ES + V   LM  YS+CG +E    VF ++   NVV +T++++         +A+ +  
Sbjct: 307 YESLLEVGNILMSRYSKCGVLEAVKSVFHQMSERNVVSWTTMISSNK-----DDAVSIFL 361

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
            M   G+ P++VTF+ ++     +  +KEG
Sbjct: 362 NMRFDGVYPNEVTFVGLINAVKCNEQIKEG 391



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 60/220 (27%), Positives = 101/220 (45%), Gaps = 20/220 (9%)

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G  +DEVTL   LKA       +L     +H  +  SGF S + VS ++M  Y + G  +
Sbjct: 73  GRHMDEVTLCLALKA----CRGDLKRGCQIHGFSTTSGFTSFVCVSNAVMGMYRKAGRFD 128

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +  +FE +  P+VV + +I++G+  N +   AL+ +  M   G++ D  T+   L+ C 
Sbjct: 129 NALCIFENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCV 185

Query: 530 HSGMVKEGQLVFNSMKSVY---GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            S    EG L+   ++S     G+++D    +  I M  R+G    A  +  +     D 
Sbjct: 186 GS----EGFLLGLQLQSTVVKTGLESDLVVGNSFITMYSRSGSFRGARRVFDEMS-FKDM 240

Query: 587 MMWSSLLRSCRVHGN-----EIIGRRVANILMELEPVDFA 621
           + W+SLL      G       +I R +    +EL+ V F 
Sbjct: 241 ISWNSLLSGLSQEGTFGFEAVVIFRDMMREGVELDHVSFT 280


>gi|449442142|ref|XP_004138841.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Cucumis sativus]
          Length = 704

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 194/631 (30%), Positives = 334/631 (52%), Gaps = 19/631 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLYD 99
           ++Y+ N  ++ + K   L SA  LFDEMP RD V++N +I+G   CG        L    
Sbjct: 32  DVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRC-- 89

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M S G +    TF S+L   + AG +  G Q+H  ++ +G+  N+Y GS L+D+Y +  
Sbjct: 90  -MRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCE 148

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A   F  + + N  +WN M+  + +    +    + + M+ EG + +  ++  ++ 
Sbjct: 149 KLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLP 208

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDV 278
                   +   QLH  +IK G   VN  + NAL+  YS CGSL +AK+ FD    + D+
Sbjct: 209 LLDDADFCNLTSQLHGKIIKHGLELVNT-MCNALITSYSKCGSLDDAKRIFDSSAGIRDL 267

Query: 279 ISWNSIVSIY---ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           ++WNS+++ Y   +  DL F   +L   MQ     P + S+   ++          G+ +
Sbjct: 268 VTWNSLLAAYLLRSQEDLAF---KLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSL 324

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNV--IESSVAVFESAPGRSLECCNSLMTSLLHS 393
           HG V K GF+  SV + +AL  MY K +   ++ ++ +FES   +     NS++T L  +
Sbjct: 325 HGLVIKRGFEQ-SVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQT 383

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G+ +DAV+ F  M    + +D  + S  L++ S  A+  LG  + +H  A+K G ESN  
Sbjct: 384 GSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLG--QQIHVLALKYGLESNEF 441

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           VS SL+  YS+CG IE + + FE+    + + + ++M GY+++G    ALD+  +M ++ 
Sbjct: 442 VSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEEKK 501

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           +  D +TF+ VL  C+H G+V++G      M+S YG+    +HY+C +D+ GR+G L++A
Sbjct: 502 VKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEA 561

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
           + L+++ P   D  +W + L +CR  GN  +  +VA  L+E+EP +   Y  +SN Y  +
Sbjct: 562 KALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNL 621

Query: 634 GEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             ++   +++     R + +  G S IEVN+
Sbjct: 622 MRWDEKAKVKRLMKERGVKKVPGWSWIEVNN 652



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 219/472 (46%), Gaps = 9/472 (1%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H   + LG   ++Y  + +++ Y +      A  LFDE+P R+  +WN M+         
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           +    +   M++ G E +  +F  M++G +   +   G+Q+HS +IK+G+ + N++  +A
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAE-NVYAGSA 139

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L+D Y+ C  L +A  SF  I   + +SWN++++ YA       A  L   M+   ++  
Sbjct: 140 LLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVD 199

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             ++   L             Q+HG + K G +  +    + +T  Y KC  ++ +  +F
Sbjct: 200 DGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITS-YSKCGSLDDAKRIF 258

Query: 373 ESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           +S+ G R L   NSL+ + L       A ++   M + G   D  + ++ + A      +
Sbjct: 259 DSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENIS 318

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAY--SRCGHIELSHQVFEKIPSPNVVCFTSI 489
           N G  R LH   IK GFE ++ +S +L+  Y  S  G ++ +  +FE +   + V + SI
Sbjct: 319 NNG--RSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSI 376

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + G S+ G   +A+     M    +  D  +F  VL  C+     + GQ + + +   YG
Sbjct: 377 LTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQI-HVLALKYG 435

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           ++++    S +I M  + GI++ A    ++       + W++L+     HG 
Sbjct: 436 LESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSS-ITWNALMFGYAQHGQ 486



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A+  S  A L +  L H  A+K G  +++    ++++ Y +C  +  +  +F+++P  
Sbjct: 4   LSAVGTSFRA-LANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMR 62

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           + V + +++ G+   G    + D+L  M   G   D+ TF  +L G   +GM   GQ V 
Sbjct: 63  DSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQV- 121

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           +S+    G   +    S ++DM  +   L+ A
Sbjct: 122 HSIIIKMGYAENVYAGSALLDMYAKCEKLEDA 153


>gi|15232500|ref|NP_188131.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546753|sp|P0C898.1|PP232_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15130
 gi|332642102|gb|AEE75623.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 167/560 (29%), Positives = 304/560 (54%), Gaps = 6/560 (1%)

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           I        S+L VC+  G   +G Q+HC +L  G GLNL   + L+D+Y +    + A 
Sbjct: 2   IPNQRQNLVSILRVCTRKGLSDQGGQVHCYLLKSGSGLNLITSNYLIDMYCKCREPLMAY 61

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FD +PERN+ +W+ ++            L ++++M  +G+ PN  +F   ++ C +  
Sbjct: 62  KVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEMGRQGIYPNEFTFSTNLKACGLLN 121

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L++G Q+H   +K+G+ ++ + V N+LVD YS CG + EA+K F  I    +ISWN+++
Sbjct: 122 ALEKGLQIHGFCLKIGF-EMMVEVGNSLVDMYSKCGRINEAEKVFRRIVDRSLISWNAMI 180

Query: 286 SIYADYDLIFDALELFFRMQLC--RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           + +        AL+ F  MQ    ++RP   +    L   S TG +Y GKQIHG++ + G
Sbjct: 181 AGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSSTGMIYAGKQIHGFLVRSG 240

Query: 344 FD-HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           F    S  +  +L D+Y KC  + S+   F+    +++   +SL+      G   +A+ +
Sbjct: 241 FHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGL 300

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  + +    +D   LS+ +   +  A    G         + SG E+  +V  S++D Y
Sbjct: 301 FKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKLPSGLET--SVLNSVVDMY 358

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG ++ + + F ++   +V+ +T ++ GY ++G+G++++ +   M++  + PD+V +L
Sbjct: 359 LKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYL 418

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C+HSGM+KEG+ +F+ +   +GI    +HY+C++D+LGRAG L +A+ L+   P 
Sbjct: 419 AVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPI 478

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             +  +W +LL  CRVHG+  +G+ V  IL+ ++  + A Y  +SN Y + G +      
Sbjct: 479 KPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKNPANYVMMSNLYGQAGYWNEQGNA 538

Query: 643 RETALARKLTRDIGHSLIEV 662
           RE    + L ++ G S +E+
Sbjct: 539 RELGNIKGLKKEAGMSWVEI 558



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 217/459 (47%), Gaps = 16/459 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           LN+ +SN  ID + K      A K+FD MP R++V+++ L+SG       K +L L+ EM
Sbjct: 39  LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 98

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              GI  +  TFS+ L  C       +G+QIH   L +GF + + +G+ LVD+Y + G  
Sbjct: 99  GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 158

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE--PNGLSFCYMVR 219
             A  +F  + +R+L +WN M+  F       + L  +  M+   ++  P+  +   +++
Sbjct: 159 NEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLK 218

Query: 220 GCSIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
            CS   ++  GKQ+H  +++ G+    +  +  +LVD Y  CG L  A+K+FD I    +
Sbjct: 219 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTM 278

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ISW+S++  YA      +A+ LF R+Q    +    +    +   +    +  GKQ+   
Sbjct: 279 ISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQAL 338

Query: 339 VTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             KL  G +     V +++ DMY KC +++ +   F     + +     ++T     G  
Sbjct: 339 AVKLPSGLE---TSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLG 395

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNIA 453
           K +V +F  M+   I  DEV     L A S S     G     +LL    IK   E    
Sbjct: 396 KKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYAC 455

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
           V    +D   R G ++ +  + + +P  PNV  + ++++
Sbjct: 456 V----VDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLS 490



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/379 (23%), Positives = 182/379 (48%), Gaps = 12/379 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           + P   T +T    C  +  L   L +  +C +   ++ +   N  +D + K G +N A+
Sbjct: 103 IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAE 162

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF--SSVLSVCSN 122
           K+F  +  R ++++N +I+G     +  +AL  +  M    IKE    F  +S+L  CS+
Sbjct: 163 KVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLLKACSS 222

Query: 123 AGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
            G    G QIH  ++  GF    +  I   LVDLY++ G    A   FD++ E+ + +W+
Sbjct: 223 TGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKTMISWS 282

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            ++  + +     E + ++ +++    + +  +   ++   +   LL +GKQ+ +  +KL
Sbjct: 283 SLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQALAVKL 342

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
               +   V N++VD Y  CG + EA+K F  + + DVISW  +++ Y  + L   ++ +
Sbjct: 343 P-SGLETSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLGKKSVRI 401

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTD 357
           F+ M      P    ++  L+  S +G +  G+++    +KL   HG    V   + + D
Sbjct: 402 FYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEEL---FSKLLETHGIKPRVEHYACVVD 458

Query: 358 MYGKCNVIESSVAVFESAP 376
           + G+   ++ +  + ++ P
Sbjct: 459 LLGRAGRLKEAKHLIDTMP 477



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 149/297 (50%), Gaps = 12/297 (4%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D +VK G+L SA+K FD++  + M++++ LI G  +     +A+ L+  +     +  +
Sbjct: 254 VDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDS 313

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
              SS++ V ++     +G Q+    + L  GL   + + +VD+Y++ G    A   F E
Sbjct: 314 FALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAE 373

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  +++ +W +++  + +     + +R++ +M    +EP+ + +  ++  CS   ++ EG
Sbjct: 374 MQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEG 433

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS--- 286
           ++L S +++   +   +     +VD     G L EAK   D +P+  +V  W +++S   
Sbjct: 434 EELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCR 493

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++ D +L  +  ++  R+    K P+  ++V   N   + G  Y+ +Q  G   +LG
Sbjct: 494 VHGDIELGKEVGKILLRIDA--KNPA--NYVMMSNLYGQAG--YWNEQ--GNARELG 542


>gi|18409250|ref|NP_564961.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75168871|sp|Q9C507.1|PP111_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial; Flags: Precursor
 gi|12325094|gb|AAG52503.1|AC018364_21 hypothetical protein; 27026-24663 [Arabidopsis thaliana]
 gi|12597785|gb|AAG60097.1|AC073178_8 PPR-repeat protein, putative [Arabidopsis thaliana]
 gi|332196793|gb|AEE34914.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 787

 Score =  306 bits (785), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/609 (29%), Positives = 333/609 (54%), Gaps = 8/609 (1%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           ++G+L+ A+K+FD MP RD+V ++ L+S C +     +AL ++  MV  G++  A T  S
Sbjct: 148 QTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMIS 207

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           V+  C+  G       +H ++    F L+  + + L+ +Y + G  + +  +F+++ ++N
Sbjct: 208 VVEGCAELGCLRIARSVHGQITRKMFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKN 267

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
             +W  M+ ++      ++ LR +++M   G+EPN ++   ++  C +  L+ EGK +H 
Sbjct: 268 AVSWTAMISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHG 327

Query: 236 HVIKLGWVDVNI-FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
             ++   +D N   ++ ALV+ Y+ CG L + +     +   ++++WNS++S+YA   ++
Sbjct: 328 FAVRRE-LDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMV 386

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
             AL LF +M   R +P   +    ++     G V  GKQIHG+V +   D     VQ++
Sbjct: 387 IQALGLFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRT--DVSDEFVQNS 444

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L DMY K   ++S+  VF     RS+   NS++     +GN  +A+ +F +M    + ++
Sbjct: 445 LIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMN 504

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           EVT    ++A S   S   G  + +H   I SG + ++    +L+D Y++CG +  +  V
Sbjct: 505 EVTFLAVIQACSSIGSLEKG--KWVHHKLIISGLK-DLFTDTALIDMYAKCGDLNAAETV 561

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F  + S ++V ++S++N Y  +G    A+     M++ G  P++V F+ VL+ C HSG V
Sbjct: 562 FRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSV 621

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           +EG+  FN MKS +G+  + +H++C ID+L R+G L +A   +++ P   D  +W SL+ 
Sbjct: 622 EEGKYYFNLMKS-FGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVN 680

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
            CR+H    I + + N L ++   D   Y+ +SN Y+E GE+E   ++R    +  L + 
Sbjct: 681 GCRIHQKMDIIKAIKNDLSDIVTDDTGYYTLLSNIYAEEGEWEEFRRLRSAMKSSNLKKV 740

Query: 655 IGHSLIEVN 663
            G+S IE++
Sbjct: 741 PGYSAIEID 749



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 149/577 (25%), Positives = 284/577 (49%), Gaps = 17/577 (2%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           T+ +P  R+ ++L      +  L + LL+    + +P        + I+ +   G  +S+
Sbjct: 2   TQYMPLFRSCSSLRL----VSQLHAHLLVTGRLRRDP----LPVTKLIESYAFMGSPDSS 53

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHP-KQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           + +F+  P  D   Y +LI  C  + H    A+ LY  +VS   + S   F SVL  C+ 
Sbjct: 54  RLVFEAFPYPDSFMYGVLIK-CNVWCHLLDAAIDLYHRLVSETTQISKFVFPSVLRACAG 112

Query: 123 AGFY-TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
           +  + + G ++H R++  G   +  I + L+ +Y + G    A  +FD +P R+L  W+ 
Sbjct: 113 SREHLSVGGKVHGRIIKGGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWST 172

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++ +  E     + LRM+  M  +GVEP+ ++   +V GC+    L   + +H  + +  
Sbjct: 173 LVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITR-K 231

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
             D++  + N+L+  YS CG L+ +++ F+ I   + +SW +++S Y   +    AL  F
Sbjct: 232 MFDLDETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSF 291

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             M      P++ +    L+     G +  GK +HG+  +   D     +  AL ++Y +
Sbjct: 292 SEMIKSGIEPNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAE 351

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  +     V      R++   NSL++   H G +  A+ +F  MV + I  D  TL+++
Sbjct: 352 CGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASS 411

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           + A   +    LG  + +H   I++   S+  V  SL+D YS+ G ++ +  VF +I   
Sbjct: 412 ISACENAGLVPLG--KQIHGHVIRTDV-SDEFVQNSLIDMYSKSGSVDSASTVFNQIKHR 468

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +VV + S++ G+S+NG   EA+ + + M    L  ++VTFL V+  C+  G +++G+ V 
Sbjct: 469 SVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVH 528

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           + +  + G+  D    + +IDM  + G L+ AE + +
Sbjct: 529 HKL-IISGL-KDLFTDTALIDMYAKCGDLNAAETVFR 563



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 207/448 (46%), Gaps = 10/448 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  + K G L S++++F+++  ++ V++  +IS   +    ++AL  + EM+  GI+
Sbjct: 241 NSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMIKSGIE 300

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL-YIGSPLVDLYMRMGPSVRALD 166
            +  T  SVLS C   G   EG  +H   +      N   +   LV+LY   G       
Sbjct: 301 PNLVTLYSVLSSCGLIGLIREGKSVHGFAVRRELDPNYESLSLALVELYAECGKLSDCET 360

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +   + +RN+  WN ++  +       + L ++ +M  + ++P+  +    +  C    L
Sbjct: 361 VLRVVSDRNIVAWNSLISLYAHRGMVIQALGLFRQMVTQRIKPDAFTLASSISACENAGL 420

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +  GKQ+H HVI+    D   FV N+L+D YS  GS+  A   F+ I    V++WNS++ 
Sbjct: 421 VPLGKQIHGHVIRTDVSDE--FVQNSLIDMYSKSGSVDSASTVFNQIKHRSVVTWNSMLC 478

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            ++      +A+ LF  M       +  +F+  +   S  G++  GK +H  +   G   
Sbjct: 479 GFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQACSSIGSLEKGKWVHHKLIISGLK- 537

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             +   +AL DMY KC  + ++  VF +   RS+   +S++ +    G I  A+  F  M
Sbjct: 538 -DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVSWSSMINAYGMHGRIGSAISTFNQM 596

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSRC 465
           V+ G   +EV     L A   S S   G     +   +KS G   N       +D  SR 
Sbjct: 597 VESGTKPNEVVFMNVLSACGHSGSVEEGK---YYFNLMKSFGVSPNSEHFACFIDLLSRS 653

Query: 466 GHIELSHQVFEKIPS-PNVVCFTSIMNG 492
           G ++ +++  +++P   +   + S++NG
Sbjct: 654 GDLKEAYRTIKEMPFLADASVWGSLVNG 681



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 219/459 (47%), Gaps = 13/459 (2%)

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR--AFCELSRPDEVLRMYNKMKAEG 206
           + L++ Y  MG    +  +F+  P  +   + ++++   +C L   D  + +Y+++ +E 
Sbjct: 38  TKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHL--LDAAIDLYHRLVSET 95

Query: 207 VEPNGLSFCYMVRGCSIGML-LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            + +   F  ++R C+     L  G ++H  +IK G VD +  +  +L+  Y   G+L +
Sbjct: 96  TQISKFVFPSVLRACAGSREHLSVGGKVHGRIIK-GGVDDDAVIETSLLCMYGQTGNLSD 154

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+K FD +PV D+++W+++VS   +   +  AL +F  M      P   + +  +   + 
Sbjct: 155 AEKVFDGMPVRDLVAWSTLVSSCLENGEVVKALRMFKCMVDDGVEPDAVTMISVVEGCAE 214

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G +   + +HG +T+  FD       S LT MY KC  + SS  +FE    ++     +
Sbjct: 215 LGCLRIARSVHGQITRKMFDLDETLCNSLLT-MYSKCGDLLSSERIFEKIAKKNAVSWTA 273

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++S       + A+  F  M+  GI  + VTL + L +  +      G  + +H  A++
Sbjct: 274 MISSYNRGEFSEKALRSFSEMIKSGIEPNLVTLYSVLSSCGLIGLIREG--KSVHGFAVR 331

Query: 446 SGFESNI-AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
              + N  ++S +L++ Y+ CG +     V   +   N+V + S+++ Y+  GM  +AL 
Sbjct: 332 RELDPNYESLSLALVELYAECGKLSDCETVLRVVSDRNIVAWNSLISLYAHRGMVIQALG 391

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           +   M+ + + PD  T    ++ C ++G+V  G+ +   +      D   Q+   +IDM 
Sbjct: 392 LFRQMVTQRIKPDAFTLASSISACENAGLVPLGKQIHGHVIRTDVSDEFVQN--SLIDMY 449

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
            ++G +D A  +  Q       + W+S+L     +GN +
Sbjct: 450 SKSGSVDSASTVFNQIKHRS-VVTWNSMLCGFSQNGNSV 487



 Score =  132 bits (333), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 113/427 (26%), Positives = 203/427 (47%), Gaps = 36/427 (8%)

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           + R CS   L+    QLH+H++  G +  +      L++ Y+  GS   ++  F+  P  
Sbjct: 7   LFRSCSSLRLV---SQLHAHLLVTGRLRRDPLPVTKLIESYAFMGSPDSSRLVFEAFPYP 63

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV---EFLNFASRTGNVYFGK 333
           D   +  ++       L+  A++L+ R  L  +   I  FV        A    ++  G 
Sbjct: 64  DSFMYGVLIKCNVWCHLLDAAIDLYHR--LVSETTQISKFVFPSVLRACAGSREHLSVGG 121

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           ++HG + K G D  +V ++++L  MYG+   +  +  VF+  P R L   ++L++S L +
Sbjct: 122 KVHGRIIKGGVDDDAV-IETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLEN 180

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFES 450
           G +  A+ MF  MVD+G+  D VT+ +      V   A LG  R+   +H    +  F+ 
Sbjct: 181 GEVVKALRMFKCMVDDGVEPDAVTMISV-----VEGCAELGCLRIARSVHGQITRKMFDL 235

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           +  +  SL+  YS+CG +  S ++FEKI   N V +T++++ Y+R     +AL     MI
Sbjct: 236 DETLCNSLLTMYSKCGDLLSSERIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMI 295

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ---HYS----CMIDM 563
           + G+ P+ VT   VL+ C   G+++EG       KSV+G    R+   +Y      ++++
Sbjct: 296 KSGIEPNLVTLYSVLSSCGLIGLIREG-------KSVHGFAVRRELDPNYESLSLALVEL 348

Query: 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII---GRRVANILMELEPVDF 620
               G L   E +L +     + + W+SL+ S   H   +I   G     +   ++P  F
Sbjct: 349 YAECGKLSDCETVL-RVVSDRNIVAWNSLI-SLYAHRGMVIQALGLFRQMVTQRIKPDAF 406

Query: 621 AVYSQVS 627
            + S +S
Sbjct: 407 TLASSIS 413



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 73/300 (24%), Positives = 146/300 (48%), Gaps = 10/300 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTS--IVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSG 58
           M++ ++ P   T+ +    C +  +VPL   +    +       + +  N  ID + KSG
Sbjct: 396 MVTQRIKPDAFTLASSISACENAGLVPLGKQI--HGHVIRTDVSDEFVQNSLIDMYSKSG 453

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            ++SA  +F+++  R +VT+N ++ G  +  +  +A+ L+D M    ++ +  TF +V+ 
Sbjct: 454 SVDSASTVFNQIKHRSVVTWNSMLCGFSQNGNSVEAISLFDYMYHSYLEMNEVTFLAVIQ 513

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            CS+ G   +G  +H +++  G   +L+  + L+D+Y + G    A  +F  +  R++ +
Sbjct: 514 ACSSIGSLEKGKWVHHKLIISGLK-DLFTDTALIDMYAKCGDLNAAETVFRAMSSRSIVS 572

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W+ M+ A+    R    +  +N+M   G +PN + F  ++  C     ++EGK   + + 
Sbjct: 573 WSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHSGSVEEGKYYFNLMK 632

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVS---IYADYDLI 294
             G V  N       +D  S  G L EA ++   +P + D   W S+V+   I+   D+I
Sbjct: 633 SFG-VSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGSLVNGCRIHQKMDII 691


>gi|449475590|ref|XP_004154496.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 974

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/621 (28%), Positives = 336/621 (54%), Gaps = 6/621 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  +  ++ + K   +++AK++F+ +  R++V +N ++ G  +    ++ +  +  M 
Sbjct: 343 NVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMK 402

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            HG +    TF+S+ S C++  +   G Q+H  ++   F  NL++ + LVD+Y + G   
Sbjct: 403 RHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALK 462

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F+ +   +  +WN ++  + +    DE   M+ +M + GV P+ +S   +V  C+
Sbjct: 463 EARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACA 522

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G+Q H  ++K+G +D +    ++L+D Y  CG ++ A+  F  +P  +V+S N
Sbjct: 523 NVQELKRGQQCHCLLVKVG-LDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVN 581

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y    L  +A+ LF  +Q+   +P+  +F   L+       +  G+QIHG V K 
Sbjct: 582 ALIAGYTMGHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKW 640

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           GF   S  V  +L  +Y        S  +F E    + L    +L++      + + A++
Sbjct: 641 GFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQ 700

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +  M  + I  D+   ++ L+A   +  ++L + + +H     +GF  +     SL+D 
Sbjct: 701 FYQHMRSDNILPDQAAFASVLRA--CAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDM 758

Query: 462 YSRCGHIELSHQVFEKIPSPN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           Y++CG ++ S QVF ++P  N V+ + S++ G ++NG   EAL++ + M Q+ +IPD+VT
Sbjct: 759 YAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVT 818

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL+ C+H+G V EG+ VF+ M + Y +     H  CM+D+LGR G L++AEE + + 
Sbjct: 819 FLGVLSACSHAGRVSEGRKVFDLMVNNYKLQPRVDHLGCMVDILGRWGFLNEAEEFINKL 878

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
               D M+WS+LL +CR HG+E+ G+R A+ LMEL+P   + Y  +S+ Y+E   +  ++
Sbjct: 879 GCKADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAV 938

Query: 641 QIRETALARKLTRDIGHSLIE 661
            +R     + + +  G+S IE
Sbjct: 939 SLRREMKLKGVKKLPGYSWIE 959



 Score =  245 bits (625), Expect = 7e-62,   Method: Compositional matrix adjust.
 Identities = 160/550 (29%), Positives = 282/550 (51%), Gaps = 16/550 (2%)

Query: 50  TIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            ++ +V  G L  A+KLF ++P  ++V +N++ISG  K    ++A+  + E+   G+K +
Sbjct: 249 VVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKAT 308

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            S+  SVLS  ++      G  +H +    G   N+Y+GS LV++Y +      A  +F+
Sbjct: 309 RSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFN 368

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            L ERN+  WN ML  F +     EV+  ++ MK  G +P+  +F  +   C+    L+ 
Sbjct: 369 SLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNF 428

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G QLH+ +IK  +   N+FVANALVD Y+  G+L EA+K F+ + + D +SWN+I+  Y 
Sbjct: 429 GGQLHTVMIKNKFAS-NLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYV 487

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
             +   +A  +F RM      P   S    ++  +    +  G+Q H  + K+G D  S 
Sbjct: 488 QEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLD-TST 546

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
              S+L DMY KC V+ ++  VF S P R++   N+L+      G++++A+ +F  +   
Sbjct: 547 CAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYT-MGHLEEAIHLFQEIQMV 605

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC-SLMDAYSRCGHI 468
           G+   EVT +  L     +   NLG  R +H   +K GF S+  + C SL+  Y      
Sbjct: 606 GLKPTEVTFAGLLDGCDGAFMLNLG--RQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRF 663

Query: 469 ELSHQVFEKIPSPN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
             S  +F ++  P  +V +T++++GY++     +AL   + M    ++PD+  F  VL  
Sbjct: 664 VDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRA 723

Query: 528 CNHSGMVKEGQ----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           C     ++ GQ    L+F++     G + D    S +IDM  + G +  + ++ ++ P  
Sbjct: 724 CAGMSSLQNGQEIHSLIFHT-----GFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRR 778

Query: 584 GDCMMWSSLL 593
            + + W+S++
Sbjct: 779 NNVISWNSMI 788



 Score =  188 bits (478), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 135/537 (25%), Positives = 249/537 (46%), Gaps = 46/537 (8%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSH 104
           N  +D +VK G+++ A+K F  +  +D+  +N ++S     G F    Q+      M +H
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVC---MWNH 136

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            ++ +  TF+ VLS CS       G Q+HC V   GFG   +    L+D+Y +      A
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD     +  +W  ++  +     P E ++++++M+  G  P+ ++           
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITL---------- 246

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
                                 + V NA    Y A G L +A+K F  IP  +V++WN +
Sbjct: 247 ----------------------VTVVNA----YVALGRLADARKLFTQIPNPNVVAWNVM 280

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S +A      +A+  F  ++    + +  S    L+  +    + +G  +H   TK G 
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGL 340

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D  +V+V SAL +MY KC+ ++++  VF S   R++   N+++     +G  ++ +E F 
Sbjct: 341 DD-NVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFS 399

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M   G   DE T ++   A +     N G    LH   IK+ F SN+ V+ +L+D Y++
Sbjct: 400 CMKRHGPQPDEFTFTSIFSACASLHYLNFGG--QLHTVMIKNKFASNLFVANALVDMYAK 457

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G ++ + + FE +   + V + +I+ GY +     EA  M   M+  G++PD+V+   +
Sbjct: 458 SGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           ++ C +   +K GQ     +  V G+D      S +IDM  + G++  A ++    P
Sbjct: 518 VSACANVQELKRGQQCHCLLVKV-GLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP 573



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 227/493 (46%), Gaps = 46/493 (9%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID + K  +L  A+ +FD     D V++  LI+G  +   P +A+ ++D M   G     
Sbjct: 184 IDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQ 243

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T  +V                                   V+ Y+ +G    A  LF +
Sbjct: 244 ITLVTV-----------------------------------VNAYVALGRLADARKLFTQ 268

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P  N+  WN+M+    +    +E +  + ++K  G++    S   ++   +   +L+ G
Sbjct: 269 IPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYG 328

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +H+   K G +D N++V +ALV+ Y+ C  +  AK+ F+ +   +++ WN+++  +A 
Sbjct: 329 SMVHAQATKEG-LDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQ 387

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
             L  + +E F  M+    +P   +F    +  +    + FG Q+H  + K  F   ++ 
Sbjct: 388 NGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFA-SNLF 446

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL DMY K   ++ +   FE          N+++   +      +A  MF  MV  G
Sbjct: 447 VANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNG 506

Query: 411 IGLDEVTLSTTLKALSVSASAN---LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           +  DEV+L++      VSA AN   L   +  HC  +K G +++     SL+D Y +CG 
Sbjct: 507 VLPDEVSLASI-----VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGV 561

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +  +  VF  +PS NVV   +++ GY+  G   EA+ + + +   GL P +VTF  +L G
Sbjct: 562 VLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDG 620

Query: 528 CNHSGMVKEGQLV 540
           C+ + M+  G+ +
Sbjct: 621 CDGAFMLNLGRQI 633



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 203/448 (45%), Gaps = 42/448 (9%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH + L +G GL   +G+ +VDLY++ G    A   F  L ++++  WN +L  + +   
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
              V++ +  M    V PN  +F  ++  CS    ++ G+Q+H  V K G+     F   
Sbjct: 123 FATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF-GFRSFCQG 181

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
            L+D Y+ C  L +A+  FD     D +SW ++++ Y       +A+++F RMQ     P
Sbjct: 182 GLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAP 241

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              + V  +N     G +   +++                                    
Sbjct: 242 DQITLVTVVNAYVALGRLADARKL------------------------------------ 265

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F   P  ++   N +++     G  ++A+  F  +   G+     +L + L A++  +  
Sbjct: 266 FTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSML 325

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           N GS  ++H  A K G + N+ V  +L++ Y++C  ++ + QVF  +   N+V + +++ 
Sbjct: 326 NYGS--MVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLG 383

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK-EGQLVFNSMKSVYGI 550
           G+++NG+ +E ++    M + G  PD+ TF  + + C     +   GQL    +K+ +  
Sbjct: 384 GFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFA- 442

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQ 578
            ++    + ++DM  ++G L +A +  +
Sbjct: 443 -SNLFVANALVDMYAKSGALKEARKQFE 469



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 172/367 (46%), Gaps = 41/367 (11%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L   K +HS  +K+G V +   + N +VD Y  CG++  A+K+F  +   DV +WNS++S
Sbjct: 57  LSTAKVIHSKSLKIG-VGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLS 115

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           +Y D+ L    ++ F  M     RP+  +F   L+  S   +V FG+Q+H  V K GF  
Sbjct: 116 MYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGF 175

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            S   Q  L DMY KC  +  +  VF+ A         +L+   +  G   +AV++F  M
Sbjct: 176 RSF-CQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRM 234

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              G   D++TL T                                     +++AY   G
Sbjct: 235 QRVGHAPDQITLVT-------------------------------------VVNAYVALG 257

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +  + ++F +IP+PNVV +  +++G+++ G   EA+     + + GL   + +   VL+
Sbjct: 258 RLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLS 317

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
                 M+  G +V ++  +  G+D +    S +++M  +   +D A+++   + G  + 
Sbjct: 318 AIASLSMLNYGSMV-HAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVF-NSLGERNI 375

Query: 587 MMWSSLL 593
           ++W+++L
Sbjct: 376 VLWNAML 382


>gi|296081733|emb|CBI20738.3| unnamed protein product [Vitis vinifera]
          Length = 865

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 185/632 (29%), Positives = 337/632 (53%), Gaps = 16/632 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF-----RHPKQALYLYD 99
           + SN  +  + K G L+SA+++FD  P RD+VT+N ++            + ++ L+L+ 
Sbjct: 113 FLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFR 172

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            + +     +  T + VL +C N+G       +H   + +G   ++++   LV++Y + G
Sbjct: 173 LLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCG 232

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LFD + ER++  WN+ML+ + +L    E  +++++    G+ P+  S   ++ 
Sbjct: 233 RMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILN 292

Query: 220 GCSIGML--LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           GC       L+ GKQ+H   +K G +D ++ VAN+LV+ YS  G    A++ F+ +   D
Sbjct: 293 GCLWAGTDDLELGKQVHGIAVKSG-LDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLD 351

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF--VEFLNFASRTGNVYF---G 332
           +ISWNS++S  A   L  +++ LF  +     +P   +   +     A   G +     G
Sbjct: 352 LISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLATAAKACGCLVLLDQG 411

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           KQIH +  K GFD   +HV S + DMY KC  + ++  VF            S+++  + 
Sbjct: 412 KQIHAHAIKAGFD-SDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVD 470

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           +GN   A+ ++  M    +  DE T +T +KA S   +   G  R LH   IK    S+ 
Sbjct: 471 NGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQG--RQLHANVIKLDCVSDP 528

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V  SL+D Y++CG+IE ++++F+K+   N+  + +++ G +++G   EA+++ + M   
Sbjct: 529 FVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSH 588

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD+V+F+ +L+ C+H+G+  E     +SM + YGI+ + +HYSC++D LGRAG++ +
Sbjct: 589 GIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQE 648

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A+++++  P      +  +LL +CR+ G+   G+RVA  L  LEP D A Y  +SN Y+ 
Sbjct: 649 ADKVIETMPFKASASINRALLGACRIQGDVETGKRVAARLFALEPFDSAAYVLLSNIYAA 708

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
              ++     R+    + + +D G S I+V +
Sbjct: 709 ANRWDDVTDARKMMKRKNVKKDPGFSWIDVKN 740



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 223/446 (50%), Gaps = 10/446 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           + +++ S   ++ + K G +  A+ LFD M  RD+V +N+++ G  +    K+A  L+ E
Sbjct: 215 EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 274

Query: 101 MVSHGIKESASTFSSVLSVCSNAGF--YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
               G++    +   +L+ C  AG      G Q+H   +  G   ++ + + LV++Y +M
Sbjct: 275 FHRSGLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLDSDVSVANSLVNMYSKM 334

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN-----GLS 213
           G +  A ++F+++   +L +WN M+ +  + S  +E + ++  +  EG++P+      ++
Sbjct: 335 GCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASIT 394

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
                + C   +LLD+GKQ+H+H IK G+ D ++ V + ++D Y  CG ++ A   F++I
Sbjct: 395 LATAAKACGCLVLLDQGKQIHAHAIKAGF-DSDLHVNSGILDMYIKCGDMVNAGIVFNYI 453

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              D ++W S++S   D      AL ++ RM+  R  P   +F   +  +S    +  G+
Sbjct: 454 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGR 513

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           Q+H  V KL        V ++L DMY KC  IE +  +F+    R++   N+++  L   
Sbjct: 514 QLHANVIKLDCVSDPF-VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQH 572

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           GN ++AV +F  M   GI  D V+    L A S  A     +   LH      G E  I 
Sbjct: 573 GNAEEAVNLFKSMKSHGIEPDRVSFIGILSACS-HAGLTSEAYEYLHSMPNDYGIEPEIE 631

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIP 479
               L+DA  R G ++ + +V E +P
Sbjct: 632 HYSCLVDALGRAGLVQEADKVIETMP 657



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 132/482 (27%), Positives = 240/482 (49%), Gaps = 20/482 (4%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL--- 189
           H R++  G   + ++ + L+ +Y + G    A  +FD  PER+L TWN +L A+      
Sbjct: 100 HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 159

Query: 190 --SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 E L ++  ++A       ++   +++ C     L   + +H + IK+G ++ ++
Sbjct: 160 NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG-LEWDV 218

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV+ ALV+ YS CG + +A+  FD++   DV+ WN ++  Y    L  +A +LF      
Sbjct: 219 FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRS 278

Query: 308 RKRPSIRSFVEFLN--FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
             RP   S    LN    + T ++  GKQ+HG   K G D   V V ++L +MY K    
Sbjct: 279 GLRPDEFSVQLILNGCLWAGTDDLELGKQVHGIAVKSGLD-SDVSVANSLVNMYSKMGCA 337

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  VF       L   NS+++S   S   +++V +F  ++ EG+  D  TL++   A 
Sbjct: 338 YFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASITLAT 397

Query: 426 SVSASAN---LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           +  A      L   + +H  AIK+GF+S++ V+  ++D Y +CG +  +  VF  I +P+
Sbjct: 398 AAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPD 457

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVF 541
            V +TS+++G   NG   +AL +   M Q  ++PD+ TF  ++   +    +++G QL  
Sbjct: 458 DVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHA 517

Query: 542 NSMKSVYGID--ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           N +K    +D  +D    + ++DM  + G ++ A  L ++     +  +W+++L     H
Sbjct: 518 NVIK----LDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKM-NVRNIALWNAMLVGLAQH 572

Query: 600 GN 601
           GN
Sbjct: 573 GN 574



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 3/265 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+ T A  C  +V L     + ++  +     +++ ++  +D ++K G + +A  +F+ +
Sbjct: 394 TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 453

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
            A D V +  +ISGC    +  QAL +Y  M    +     TF++++   S      +G 
Sbjct: 454 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGR 513

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  V+ L    + ++G+ LVD+Y + G    A  LF ++  RN+A WN ML    +  
Sbjct: 514 QLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHG 573

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ-LHSHVIKLGWVDVNIFV 249
             +E + ++  MK+ G+EP+ +SF  ++  CS   L  E  + LHS     G ++  I  
Sbjct: 574 NAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYG-IEPEIEH 632

Query: 250 ANALVDFYSACGSLIEAKKSFDFIP 274
            + LVD     G + EA K  + +P
Sbjct: 633 YSCLVDALGRAGLVQEADKVIETMP 657


>gi|449488546|ref|XP_004158080.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 179/622 (28%), Positives = 328/622 (52%), Gaps = 4/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  I  + ++GHL+ A+ LFD +P +D V +N++++G  K      A+ ++ EM 
Sbjct: 92  DVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMR 151

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              IK ++ TF+ VLSVC++      G Q+H   +  G  L+  + + L+ +Y +     
Sbjct: 152 HSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVGCGLELDSPVANTLLAMYSKCQCLQ 211

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD LP+ +L +WN ++  + +     E   ++  M + G++P+ ++F   +   +
Sbjct: 212 AARKLFDTLPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN 271

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
             + L   K++H ++I+   V +++F+ +AL+D Y  C  +  A+K+       D +   
Sbjct: 272 ELLSLKHCKEIHGYIIRHA-VVLDVFLKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCT 330

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S Y       +ALE F  +   R +P+  +F       +    +  GK++HG + K 
Sbjct: 331 TMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT 390

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D    HV SA+ DMY KC  ++ +  VF     +   C NS++TS   +G   +A+ +
Sbjct: 391 KLDE-KCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EG   D V++S  L A +   + + G  + +H   IK    S++    SL+D Y
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYG--KEIHGLMIKGPLRSDLYAESSLIDMY 507

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG++  S +VF+++   N V + SI++ Y  +G  +E L +   M++ G+ PD VTFL
Sbjct: 508 AKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFL 567

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +++ C H+G V EG   ++ M   YGI A  +HY+C+ DM GRAG L +A E +   P 
Sbjct: 568 GIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLHEAFETINSMPF 627

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +C +HGN  +    +  L +L+P++   Y  ++N  +  G++   +++
Sbjct: 628 PPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKV 687

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R     R + +  G+S IEVN+
Sbjct: 688 RSIMKERGVRKVPGYSWIEVNN 709



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 151/556 (27%), Positives = 271/556 (48%), Gaps = 22/556 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +V++G L  AK LF  +       +N +I G         AL  Y +M+  G+     TF
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             V+  C        G  +H  V  +G   ++++GS L+ LY   G    A  LFD +P+
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++   WN+ML  + +       ++++ +M+   ++PN ++F  ++  C+   +LD G QL
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H   +  G ++++  VAN L+  YS C  L  A+K FD +P  D++SWN I+S Y    L
Sbjct: 182 HGIAVGCG-LELDSPVANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQNGL 240

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVH 350
           + +A  LF  M     +P   +F  FL   +   ++   K+IHGY+ +    H     V 
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIR----HAVVLDVF 296

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           ++SAL D+Y KC  +E +      +       C ++++  + +G  K+A+E F ++V E 
Sbjct: 297 LKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER 356

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +    VT S+   A +  A+ NLG  + LH   IK+  +    V  +++D Y++CG ++L
Sbjct: 357 MKPTSVTFSSIFPAFAGLAALNLG--KELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDL 414

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN- 529
           + +VF +I   + +C+ S++   S+NG   EA+++   M   G   D V+    L+ C  
Sbjct: 415 ACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACAN 474

Query: 530 ----HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
               H G    G ++   ++S      D    S +IDM  + G L+ +  +  +     +
Sbjct: 475 LPALHYGKEIHGLMIKGPLRS------DLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNE 528

Query: 586 CMMWSSLLRSCRVHGN 601
            + W+S++ +   HG+
Sbjct: 529 -VSWNSIISAYGNHGD 543



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 218/447 (48%), Gaps = 6/447 (1%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y+R G    A +LF  L     + WN M+R F  + + +  L  Y KM   GV P+  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F Y+V+ C     +  GK +H  V  +G +  ++FV ++L+  Y+  G L +A+  FD I
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMG-LKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
           P  D + WN +++ Y       +A+++F  M+    +P+  +F   L+  +    +  G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           Q+HG     G +  S  V + L  MY KC  ++++  +F++ P   L   N +++  + +
Sbjct: 180 QLHGIAVGCGLELDSP-VANTLLAMYSKCQCLQAARKLFDTLPQSDLVSWNGIISGYVQN 238

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G + +A  +F  M+  GI  D +T ++ L    V+   +L  C+ +H   I+     ++ 
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPC--VNELLSLKHCKEIHGYIIRHAVVLDVF 296

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           +  +L+D Y +C  +E++ +   +  S + V  T++++GY  NG  +EAL+    ++Q  
Sbjct: 297 LKSALIDIYFKCRDVEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER 356

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           + P  VTF  +         +  G+ +  S+     +D      S ++DM  + G LD A
Sbjct: 357 MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLA 415

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHG 600
             +  +     D + W+S++ SC  +G
Sbjct: 416 CRVFNRIT-EKDAICWNSMITSCSQNG 441



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 175/377 (46%), Gaps = 2/377 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+S  + P   T  +  P    ++ L     +  Y  +    L+++  +  ID + K   
Sbjct: 251 MISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRD 310

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+K   +  + D V    +ISG       K+AL  +  +V   +K ++ TFSS+   
Sbjct: 311 VEMAQKNLCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA 370

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            +       G ++H  ++        ++GS ++D+Y + G    A  +F+ + E++   W
Sbjct: 371 FAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICW 430

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+ +  +  RP E + ++ +M  EG   + +S    +  C+    L  GK++H  +IK
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  +++  ++L+D Y+ CG+L  +++ FD +   + +SWNSI+S Y ++  + + L 
Sbjct: 491 -GPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQEKNEVSWNSIISAYGNHGDLKECLA 549

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  M     +P   +F+  ++     G V  G + +  +T+       +   + + DM+
Sbjct: 550 LFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMF 609

Query: 360 GKCNVIESSVAVFESAP 376
           G+   +  +     S P
Sbjct: 610 GRAGRLHEAFETINSMP 626


>gi|449435936|ref|XP_004135750.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Cucumis sativus]
          Length = 762

 Score =  306 bits (784), Expect = 2e-80,   Method: Compositional matrix adjust.
 Identities = 180/622 (28%), Positives = 328/622 (52%), Gaps = 4/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  I  + ++GHL+ A+ LFD +P +D V +N++++G  K      A+ ++ EM 
Sbjct: 92  DVFVGSSLIKLYAENGHLSDAQYLFDNIPQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMR 151

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              IK ++ TF+ VLSVC++      G Q+H   +S G  L+  + + L+ +Y +     
Sbjct: 152 HSEIKPNSVTFACVLSVCASEAMLDLGTQLHGIAVSCGLELDSPVANTLLAMYSKCQCLQ 211

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD  P+ +L +WN ++  + +     E   ++  M + G++P+ ++F   +   +
Sbjct: 212 AARKLFDTSPQSDLVSWNGIISGYVQNGLMGEAEHLFRGMISAGIKPDSITFASFLPCVN 271

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
             + L   K++H ++I+   V +++F+ +AL+D Y  C  +  A+K        D +   
Sbjct: 272 ELLSLKHCKEIHGYIIRHA-VVLDVFLKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCT 330

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S Y       +ALE F  +   R +P+  +F       +    +  GK++HG + K 
Sbjct: 331 TMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT 390

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D    HV SA+ DMY KC  ++ +  VF     +   C NS++TS   +G   +A+ +
Sbjct: 391 KLDE-KCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICWNSMITSCSQNGRPGEAINL 449

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EG   D V++S  L A +   + + G  + +H   IK    S++    SL+D Y
Sbjct: 450 FRQMGMEGTRYDCVSISGALSACANLPALHYG--KEIHGLMIKGPLRSDLYAESSLIDMY 507

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG++  S +VF+++   N V + SI++ Y  +G  +E L +   M++ G+ PD VTFL
Sbjct: 508 AKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLALFHEMLRNGIQPDHVTFL 567

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +++ C H+G V EG   ++ M   YGI A  +HY+C+ DM GRAG LD+A E +   P 
Sbjct: 568 GIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMFGRAGRLDEAFETINSMPF 627

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +C +HGN  +    +  L +L+P++   Y  ++N  +  G++   +++
Sbjct: 628 PPDAGVWGTLLGACHIHGNVELAEVASKHLFDLDPLNSGYYVLLANVQAGAGKWRKVLKV 687

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R     R + +  G+S IEVN+
Sbjct: 688 RSIMKERGVRKVPGYSWIEVNN 709



 Score =  224 bits (572), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 151/556 (27%), Positives = 271/556 (48%), Gaps = 22/556 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +V++G L  AK LF  +       +N +I G         AL  Y +M+  G+     TF
Sbjct: 2   YVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYTF 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             V+  C        G  +H  V  +G   ++++GS L+ LY   G    A  LFD +P+
Sbjct: 62  PYVVKACCGLKSVKMGKIVHETVNLMGLKEDVFVGSSLIKLYAENGHLSDAQYLFDNIPQ 121

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++   WN+ML  + +       ++++ +M+   ++PN ++F  ++  C+   +LD G QL
Sbjct: 122 KDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGTQL 181

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H   +  G ++++  VAN L+  YS C  L  A+K FD  P  D++SWN I+S Y    L
Sbjct: 182 HGIAVSCG-LELDSPVANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQNGL 240

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVH 350
           + +A  LF  M     +P   +F  FL   +   ++   K+IHGY+ +    H     V 
Sbjct: 241 MGEAEHLFRGMISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIR----HAVVLDVF 296

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           ++SAL D+Y KC  +E +  +   +       C ++++  + +G  K+A+E F ++V E 
Sbjct: 297 LKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER 356

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +    VT S+   A +  A+ NLG  + LH   IK+  +    V  +++D Y++CG ++L
Sbjct: 357 MKPTSVTFSSIFPAFAGLAALNLG--KELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDL 414

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN- 529
           + +VF +I   + +C+ S++   S+NG   EA+++   M   G   D V+    L+ C  
Sbjct: 415 ACRVFNRITEKDAICWNSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACAN 474

Query: 530 ----HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
               H G    G ++   ++S      D    S +IDM  + G L+ +  +  +     +
Sbjct: 475 LPALHYGKEIHGLMIKGPLRS------DLYAESSLIDMYAKCGNLNFSRRVFDRMQERNE 528

Query: 586 CMMWSSLLRSCRVHGN 601
            + W+S++ +   HG+
Sbjct: 529 -VSWNSIISAYGNHGD 543



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 115/447 (25%), Positives = 220/447 (49%), Gaps = 6/447 (1%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y+R G    A +LF  L     + WN M+R F  + + +  L  Y KM   GV P+  +
Sbjct: 1   MYVRTGSLKDAKNLFYTLQLGCTSAWNWMIRGFTMMGQFNYALLFYLKMLGAGVSPDKYT 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F Y+V+ C     +  GK +H  V  +G +  ++FV ++L+  Y+  G L +A+  FD I
Sbjct: 61  FPYVVKACCGLKSVKMGKIVHETVNLMG-LKEDVFVGSSLIKLYAENGHLSDAQYLFDNI 119

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
           P  D + WN +++ Y       +A+++F  M+    +P+  +F   L+  +    +  G 
Sbjct: 120 PQKDSVLWNVMLNGYVKNGDSGNAIKIFLEMRHSEIKPNSVTFACVLSVCASEAMLDLGT 179

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           Q+HG     G +  S  V + L  MY KC  ++++  +F+++P   L   N +++  + +
Sbjct: 180 QLHGIAVSCGLELDSP-VANTLLAMYSKCQCLQAARKLFDTSPQSDLVSWNGIISGYVQN 238

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G + +A  +F  M+  GI  D +T ++ L    V+   +L  C+ +H   I+     ++ 
Sbjct: 239 GLMGEAEHLFRGMISAGIKPDSITFASFLPC--VNELLSLKHCKEIHGYIIRHAVVLDVF 296

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           +  +L+D Y +C  +E++ ++  +  S + V  T++++GY  NG  +EAL+    ++Q  
Sbjct: 297 LKSALIDIYFKCRDVEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQER 356

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           + P  VTF  +         +  G+ +  S+     +D      S ++DM  + G LD A
Sbjct: 357 MKPTSVTFSSIFPAFAGLAALNLGKELHGSIIKT-KLDEKCHVGSAILDMYAKCGRLDLA 415

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHG 600
             +  +     D + W+S++ SC  +G
Sbjct: 416 CRVFNRIT-EKDAICWNSMITSCSQNG 441



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 85/377 (22%), Positives = 177/377 (46%), Gaps = 2/377 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQ-LNIYSSNRTIDDFVKSGH 59
           M+S  + P   T  +  P    ++ L     +  Y   +   L+++  +  ID + K   
Sbjct: 251 MISAGIKPDSITFASFLPCVNELLSLKHCKEIHGYIIRHAVVLDVFLKSALIDIYFKCRD 310

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+K+  +  + D V    +ISG       K+AL  +  +V   +K ++ TFSS+   
Sbjct: 311 VEMAQKILCQSSSFDTVVCTTMISGYVLNGKNKEALEAFRWLVQERMKPTSVTFSSIFPA 370

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            +       G ++H  ++        ++GS ++D+Y + G    A  +F+ + E++   W
Sbjct: 371 FAGLAALNLGKELHGSIIKTKLDEKCHVGSAILDMYAKCGRLDLACRVFNRITEKDAICW 430

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+ +  +  RP E + ++ +M  EG   + +S    +  C+    L  GK++H  +IK
Sbjct: 431 NSMITSCSQNGRPGEAINLFRQMGMEGTRYDCVSISGALSACANLPALHYGKEIHGLMIK 490

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  +++  ++L+D Y+ CG+L  +++ FD +   + +SWNSI+S Y ++  + + L 
Sbjct: 491 -GPLRSDLYAESSLIDMYAKCGNLNFSRRVFDRMQERNEVSWNSIISAYGNHGDLKECLA 549

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  M     +P   +F+  ++     G V  G + +  +T+       +   + + DM+
Sbjct: 550 LFHEMLRNGIQPDHVTFLGIISACGHAGQVDEGIRYYHLMTEEYGIPARMEHYACVADMF 609

Query: 360 GKCNVIESSVAVFESAP 376
           G+   ++ +     S P
Sbjct: 610 GRAGRLDEAFETINSMP 626


>gi|356540705|ref|XP_003538826.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g50420-like [Glycine max]
          Length = 715

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 185/624 (29%), Positives = 346/624 (55%), Gaps = 16/624 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF--RHPKQALYLYDEMVSHG 105
           N  +  + + G L  +  +FD+MP R +V+YN L++   +    H   AL LY +MV++G
Sbjct: 52  NNILSMYARCGSLTDSHLVFDKMPRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNG 111

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           ++ S++TF+S+L   S    +  G  +H +   LG   ++ + + L+++Y   G    A 
Sbjct: 112 LRPSSTTFTSLLQASSLLEHWWFGSSLHAKGFKLGLN-DICLQTSLLNMYSNCGDLSSAE 170

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +F ++ +R+   WN ++  + + ++ +E + ++ KM + G  P   ++C ++  CS   
Sbjct: 171 LVFWDMVDRDHVAWNSLIMGYLKNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLK 230

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
               G+ +H+HVI    V +++ + NALVD Y   G++  A + F  +   D++SWNS++
Sbjct: 231 DYRSGRLIHAHVIVRN-VSLDLHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMI 289

Query: 286 SIYADYDLIFDALELFFRMQ-LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           + Y++ +    A+ LF ++Q +C  +P   ++   ++      +  +GK +H  V K GF
Sbjct: 290 AGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGIISATGVFPSSSYGKSLHAEVIKTGF 349

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +  SV V S L  MY K +  +++  VF S   + +     ++T      +   A+  F 
Sbjct: 350 ER-SVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFF 408

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDA 461
            MV EG  +D+  LS       V+A ANL   R   ++HC A+K G++  ++VS SL+D 
Sbjct: 409 QMVHEGHEVDDYVLSGV-----VNACANLAVLRQGEIIHCYAVKLGYDVEMSVSGSLIDM 463

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++ G +E ++ VF ++  P++ C+ S++ GYS +GM  EAL + E ++++GLIPD+VTF
Sbjct: 464 YAKNGSLEAAYLVFSQVSEPDLKCWNSMLGGYSHHGMVEEALQVFEEILKQGLIPDQVTF 523

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L +L+ C+HS +V++G+ ++N M S+ G+    +HYSCM+ +  RA +L++AEE++ ++P
Sbjct: 524 LSLLSACSHSRLVEQGKFLWNYMNSI-GLIPGLKHYSCMVTLFSRAALLEEAEEIINKSP 582

Query: 582 GGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
              D + +W +LL +C ++ N  +G   A  ++ L+  D      +SN Y+   +++   
Sbjct: 583 YIEDNLELWRTLLSACVINKNFKVGIHAAEEVLRLKAEDGPTLVLLSNLYAAARKWDKVA 642

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
           +IR       L +  G S IE  +
Sbjct: 643 EIRRNMRGLMLDKYPGLSWIEAKN 666



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 122/494 (24%), Positives = 230/494 (46%), Gaps = 17/494 (3%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGL---NLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           S+L  CS      E  Q+H  +L+        + ++ + ++ +Y R G    +  +FD++
Sbjct: 15  SLLQKCSTVTSLREARQLHALILTTTTAFTSQSPFVYNNILSMYARCGSLTDSHLVFDKM 74

Query: 172 PERNLATWNLMLRAFCELSRPDEV--LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           P R + ++N +L A+   S    +  L +Y +M   G+ P+  +F  +++  S+      
Sbjct: 75  PRRTIVSYNALLAAYSRASPNHAISALELYTQMVTNGLRPSSTTFTSLLQASSLLEHWWF 134

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G  LH+   KLG  D  I +  +L++ YS CG L  A+  F  +   D ++WNS++  Y 
Sbjct: 135 GSSLHAKGFKLGLND--ICLQTSLLNMYSNCGDLSSAELVFWDMVDRDHVAWNSLIMGYL 192

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT--KLGFDHG 347
             + I + + LF +M      P+  ++   LN  SR  +   G+ IH +V    +  D  
Sbjct: 193 KNNKIEEGIWLFIKMMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLD-- 250

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            +H+Q+AL DMY     ++++  +F       L   NS++     + + + A+ +F  + 
Sbjct: 251 -LHLQNALVDMYCNAGNMQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQ 309

Query: 408 DEGI-GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           +      D+ T +  + A  V  S++ G  + LH   IK+GFE ++ V  +L+  Y +  
Sbjct: 310 EMCFPKPDDYTYAGIISATGVFPSSSYG--KSLHAEVIKTGFERSVFVGSTLVSMYFKNH 367

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
             + + +VF  I   +VV +T ++ GYS+   G  A+     M+  G   D      V+ 
Sbjct: 368 ESDAAWRVFCSISVKDVVLWTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVN 427

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C +  ++++G+++ +      G D +      +IDM  + G L+ A  +  Q     D 
Sbjct: 428 ACANLAVLRQGEII-HCYAVKLGYDVEMSVSGSLIDMYAKNGSLEAAYLVFSQV-SEPDL 485

Query: 587 MMWSSLLRSCRVHG 600
             W+S+L     HG
Sbjct: 486 KCWNSMLGGYSHHG 499



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 91/401 (22%), Positives = 198/401 (49%), Gaps = 6/401 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+S    P   T   +  +C+ +    S  L+ ++    N  L+++  N  +D +  +G+
Sbjct: 207 MMSVGFAPTQFTYCMVLNSCSRLKDYRSGRLIHAHVIVRNVSLDLHLQNALVDMYCNAGN 266

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI-KESASTFSSVLS 118
           + +A ++F  M   D+V++N +I+G  +    ++A+ L+ ++      K    T++ ++S
Sbjct: 267 MQTAYRIFSRMENPDLVSWNSMIAGYSENEDGEKAMNLFVQLQEMCFPKPDDYTYAGIIS 326

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
                   + G  +H  V+  GF  ++++GS LV +Y +   S  A  +F  +  +++  
Sbjct: 327 ATGVFPSSSYGKSLHAEVIKTGFERSVFVGSTLVSMYFKNHESDAAWRVFCSISVKDVVL 386

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  M+  + +++     +R + +M  EG E +      +V  C+   +L +G+ +H + +
Sbjct: 387 WTEMITGYSKMTDGICAIRCFFQMVHEGHEVDDYVLSGVVNACANLAVLRQGEIIHCYAV 446

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           KLG+ DV + V+ +L+D Y+  GSL  A   F  +   D+  WNS++  Y+ + ++ +AL
Sbjct: 447 KLGY-DVEMSVSGSLIDMYAKNGSLEAAYLVFSQVSEPDLKCWNSMLGGYSHHGMVEEAL 505

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           ++F  +      P   +F+  L+  S +  V  GK +  Y+  +G   G  H  S +  +
Sbjct: 506 QVFEEILKQGLIPDQVTFLSLLSACSHSRLVEQGKFLWNYMNSIGLIPGLKHY-SCMVTL 564

Query: 359 YGKCNVIESSVAVFESAP--GRSLECCNSLMTSLLHSGNIK 397
           + +  ++E +  +   +P    +LE   +L+++ + + N K
Sbjct: 565 FSRAALLEEAEEIINKSPYIEDNLELWRTLLSACVINKNFK 605


>gi|225460338|ref|XP_002280412.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Vitis vinifera]
          Length = 802

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 191/621 (30%), Positives = 325/621 (52%), Gaps = 17/621 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G  + AKKLFD MP R++V++N LISG  +     + + L+ E     ++    TF
Sbjct: 64  YCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTF 123

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           S+ LSVC        G  IH  +   G G  + + + L+D+Y + G    A  +F+   E
Sbjct: 124 SNALSVCGRTLDLRLGRLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADE 183

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC--SIGMLLDEGK 231
            +  +WN ++  +  +   DE+LR+  KM   G+  N  +    ++ C  +    ++ GK
Sbjct: 184 LDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGK 243

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            LH   +KLG +D+++ V  AL+D Y+  G L +A K F  +P  +V+ +N++++ +   
Sbjct: 244 MLHGCAVKLG-LDLDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQM 302

Query: 292 DLIFD-----ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           + + D     A+ LFF MQ    +PS  +F   L   S       GKQIH  + K     
Sbjct: 303 ETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQS 362

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
               + +AL ++Y     IE  +  F S P   +    SL+   + +G  +  + +F  +
Sbjct: 363 DEF-IGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHEL 421

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYS 463
           +  G   DE T+S  L     SA ANL + +    +H  AIK+G  +   +  S +  Y+
Sbjct: 422 LFSGRKPDEFTISIML-----SACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYA 476

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG I+ ++  F++  +P++V ++ +++  +++G  +EA+D+ E+M   G+ P+ +TFL 
Sbjct: 477 KCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLG 536

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL  C+H G+V+EG   F  MK  +GI  + +H +C++D+LGRAG L +AE  +  +   
Sbjct: 537 VLVACSHGGLVEEGLRYFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFE 596

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
           GD +MW SLL +CRVH     G+RVA  ++ELEP   A Y  + N Y++ G    + +IR
Sbjct: 597 GDPVMWRSLLSACRVHKATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIR 656

Query: 644 ETALARKLTRDIGHSLIEVNS 664
                R + ++ G S IEV +
Sbjct: 657 NLMKDRGVKKEPGLSWIEVGN 677



 Score =  155 bits (391), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 128/527 (24%), Positives = 240/527 (45%), Gaps = 38/527 (7%)

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
           H  Q  YL       G+   + T++ ++   +  G    G   H  ++   F   L++ +
Sbjct: 6   HNPQPYYL-------GLPLDSVTYTKLVQCSTRTGSLIHGKLAHMHMIKTCFKPCLFLLN 58

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
            L+ +Y + G +  A  LFD +P+RN+ +WN ++  + ++    EV+ ++ + +   +  
Sbjct: 59  NLLYMYCKCGETDVAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRL 118

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +  +F   +  C   + L  G+ +H+ +I +  +   + + N+L+D Y  CG +  A+  
Sbjct: 119 DKFTFSNALSVCGRTLDLRLGRLIHA-LITVSGLGGPVLLTNSLIDMYCKCGRIDWARLV 177

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE-------FLNF 322
           F+     D +SWNS+++ Y       + L L  +M   R   ++ S+           NF
Sbjct: 178 FESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKM--LRHGLNLNSYALGSALKACGSNF 235

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
           +S   ++  GK +HG   KLG D   V V +AL D Y K   +E +  +F+  P  ++  
Sbjct: 236 SS---SIECGKMLHGCAVKLGLDLDVV-VGTALLDTYAKIGDLEDATKIFKLMPDPNVVM 291

Query: 383 CNSLMTSLLHSGNIKD-----AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
            N+++   L    + D     A+ +F  M   G+   E T S+ LKA S   +   G  +
Sbjct: 292 YNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILKACSTIEAFECG--K 349

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H    K   +S+  +  +L++ YS  G IE   + F   P  +VV +TS++ G+ +NG
Sbjct: 350 QIHAQIFKYNLQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNG 409

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
                L +   ++  G  PD+ T   +L+ C +   VK G+ +       Y I     ++
Sbjct: 410 QFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQI-----HAYAIKTGIGNF 464

Query: 558 SCM----IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + +    I M  + G +D A    ++T    D + WS ++ S   HG
Sbjct: 465 TIIQNSQICMYAKCGDIDSANMTFKETK-NPDIVSWSVMISSNAQHG 510



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 160/328 (48%), Gaps = 12/328 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF-----RHPKQALY 96
           L++      +D + K G L  A K+F  MP  ++V YN +I+G  +          +A+Y
Sbjct: 256 LDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 315

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L+ EM S G+K S  TFSS+L  CS    +  G QIH ++       + +IG+ LV+LY 
Sbjct: 316 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 375

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
             G     L  F   P+ ++ +W  ++    +  + +  L +++++   G +P+  +   
Sbjct: 376 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 435

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           M+  C+    +  G+Q+H++ IK G  +  I + N+ +  Y+ CG +  A  +F      
Sbjct: 436 MLSACANLAAVKSGEQIHAYAIKTGIGNFTI-IQNSQICMYAKCGDIDSANMTFKETKNP 494

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D++SW+ ++S  A +    +A++LF  M+     P+  +F+  L   S  G V  G +  
Sbjct: 495 DIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLR-- 552

Query: 337 GYVTKLGFDHG---SVHVQSALTDMYGK 361
            Y   +  DHG   +V   + + D+ G+
Sbjct: 553 -YFEIMKKDHGITPNVKHSACIVDLLGR 579



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 4/289 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S  + P   T +++   C++I        + +   + N Q + +  N  ++ +  SG 
Sbjct: 320 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 379

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +    K F   P  D+V++  LI G  +    +  L L+ E++  G K    T S +LS 
Sbjct: 380 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 439

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+N      G QIH   +  G G    I +  + +Y + G    A   F E    ++ +W
Sbjct: 440 CANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSW 499

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           ++M+ +  +     E + ++  MK  G+ PN ++F  ++  CS G L++EG +    + K
Sbjct: 500 SVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 559

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSF--DFIPVDDVISWNSIVS 286
              +  N+  +  +VD     G L EA +SF  D     D + W S++S
Sbjct: 560 DHGITPNVKHSACIVDLLGRAGRLAEA-ESFIMDSGFEGDPVMWRSLLS 607



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/204 (25%), Positives = 110/204 (53%), Gaps = 5/204 (2%)

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+ LD VT +  ++  + + S   G  +L H   IK+ F+  + +  +L+  Y +CG  +
Sbjct: 14  GLPLDSVTYTKLVQCSTRTGSLIHG--KLAHMHMIKTCFKPCLFLLNNLLYMYCKCGETD 71

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           ++ ++F+++P  NVV + S+++GY++ G   E +++ +      L  DK TF   L+ C 
Sbjct: 72  VAKKLFDRMPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCG 131

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            +  ++ G+L+ +++ +V G+       + +IDM  + G +D A  L+ ++    D + W
Sbjct: 132 RTLDLRLGRLI-HALITVSGLGGPVLLTNSLIDMYCKCGRIDWA-RLVFESADELDSVSW 189

Query: 590 SSLLRS-CRVHGNEIIGRRVANIL 612
           +SL+    R+  N+ + R +  +L
Sbjct: 190 NSLIAGYVRIGSNDEMLRLLVKML 213


>gi|147843467|emb|CAN82070.1| hypothetical protein VITISV_010010 [Vitis vinifera]
          Length = 1005

 Score =  306 bits (783), Expect = 3e-80,   Method: Compositional matrix adjust.
 Identities = 177/622 (28%), Positives = 332/622 (53%), Gaps = 6/622 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  ID + K G ++ A+++FD+M  +D V++  +++G        + L L+D+M    +
Sbjct: 266 SNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYAHNGCFVEVLELFDKMKLGNV 325

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + +  +  S     +      +G +IH   L      ++ + +PL+ +Y + G + +A  
Sbjct: 326 RINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRIDSDILVATPLMVMYAKCGETEKAKQ 385

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LF  L  R+L  W+ ++ A  +   P+E L ++ +M+ + ++PN ++   ++  C+   L
Sbjct: 386 LFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQKMKPNRVTLMSILPACADLSL 445

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L  GK +H   +K   +D ++    ALV  Y+ CG    A  +F+ +   D+++WNS+++
Sbjct: 446 LKLGKSIHCFTVKAD-MDSDLSTGTALVSMYAKCGFFTAALTTFNRMSSRDIVTWNSLIN 504

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA     ++A+++F++++L    P   + V  +   +   ++  G  IHG + KLGF+ 
Sbjct: 505 GYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACALLNDLDQGTCIHGLIVKLGFE- 563

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGF 405
              HV++AL DMY KC  + S+  +F        E   N ++ + + +G+ K+A+  F  
Sbjct: 564 SDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTWNVIIAAYMQNGHAKEAISSFHQ 623

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  E    + VT  + L A +  A+   G     H C I+ GF SN  V  SL+D Y++C
Sbjct: 624 MRLENFHPNSVTFVSVLPAAAYLAAFREGMA--FHACIIQMGFLSNTLVGNSLIDMYAKC 681

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G +  S ++F ++   + V + ++++GY+ +G G  A+ +  +M +  +  D V+F+ VL
Sbjct: 682 GQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQESQVQIDSVSFVSVL 741

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C H G+V+EG+ +F+SM   Y I  D +HY+CM+D+LGRAG+ D+    ++  P   D
Sbjct: 742 SACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLFDETLGFIKVMPVEPD 801

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             +W +LL SCR+H N  +G    + L++LEP + A +  +S+ Y++ G +  + + R  
Sbjct: 802 AGVWGALLGSCRMHSNVKLGEVALDHLVKLEPRNPAHFVVLSSIYAQSGRWADAGKARSK 861

Query: 646 ALARKLTRDIGHSLIEV-NSCH 666
                L +  G S +E+ N  H
Sbjct: 862 MNDLGLKKTPGCSWVELKNKVH 883



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 162/612 (26%), Positives = 302/612 (49%), Gaps = 28/612 (4%)

Query: 11  RTITTLAPTCTSIVPLSSSL---------LLDSYCQPNPQLNIYSS--------NRTIDD 53
           R+ T++A   +    LSSS          LL S    NP L I++         + +I  
Sbjct: 9   RSFTSIATXASEFPSLSSSTYTNYLHYPRLLSSCKHLNPLLQIHAQIIVSGFKHHHSITH 68

Query: 54  FVKSGHL----NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            +    L    + A+ +FD  P    + +N +I    + +   +AL +Y  MV  G++  
Sbjct: 69  LINLYSLFHKCDLARSVFDSTPNPSRILWNSMIRAYTRSKQYNEALEMYYCMVEKGLEPD 128

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
             TF+ VL  C+ A    EG+  H  +   G   +++IG+ LVD+Y +MG   RA ++FD
Sbjct: 129 KYTFTFVLKACTGALNLQEGVWFHGEIDRRGLERDVFIGAGLVDMYSKMGDLKRAREVFD 188

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           ++P+R++  WN M+    +   P E +  +  M+  GVEP+ +S   +  G      ++ 
Sbjct: 189 KMPKRDVVAWNAMIAGLSQSEDPCEAVDFFRSMQLVGVEPSSVSLLNLFPGICKLSNIEL 248

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            + +H +V +    D +  V+N L+D YS CG +  A++ FD +   D +SW ++++ YA
Sbjct: 249 CRSIHGYVFRR---DFSSAVSNGLIDLYSKCGDVDVARRVFDQMVDQDDVSWGTMMAGYA 305

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                 + LELF +M+L   R +  S V     A+ T ++  GK+IHG   +   D   +
Sbjct: 306 HNGCFVEVLELFDKMKLGNVRINKVSAVSAFLAAAETIDLEKGKEIHGCALQQRID-SDI 364

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V + L  MY KC   E +  +F    GR L   ++++ +L+ +G  ++A+ +F  M ++
Sbjct: 365 LVATPLMVMYAKCGETEKAKQLFWGLQGRDLVAWSAIIAALVQTGYPEEALSLFQEMQNQ 424

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  + VTL + L A +  +   LG  + +HC  +K+  +S+++   +L+  Y++CG   
Sbjct: 425 KMKPNRVTLMSILPACADLSLLKLG--KSIHCFTVKADMDSDLSTGTALVSMYAKCGFFT 482

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +   F ++ S ++V + S++NGY++ G    A+DM   +    + PD  T + V+  C 
Sbjct: 483 AALTTFNRMSSRDIVTWNSLINGYAQIGDPYNAIDMFYKLRLSAINPDAGTMVGVVPACA 542

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
               + +G  +   +  + G ++D    + +IDM  + G L  AE L  +T    D + W
Sbjct: 543 LLNDLDQGTCIHGLIVKL-GFESDCHVKNALIDMYAKCGSLPSAEFLFNKTDFTKDEVTW 601

Query: 590 SSLLRSCRVHGN 601
           + ++ +   +G+
Sbjct: 602 NVIIAAYMQNGH 613



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 43/143 (30%), Positives = 67/143 (46%), Gaps = 2/143 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N    N  ID + K G L  ++KLF+EM  +D V++N ++SG     H  +A+ L+  M 
Sbjct: 667 NTLVGNSLIDMYAKCGQLXYSEKLFNEMDHKDTVSWNAMLSGYAVHGHGDRAIALFSLMQ 726

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQI-HCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              ++  + +F SVLS C + G   EG +I H          +L   + +VDL  R G  
Sbjct: 727 ESQVQIDSVSFVSVLSACRHXGLVEEGRKIFHSMSDKYHIKPDLEHYACMVDLLGRAGLF 786

Query: 162 VRALDLFDELP-ERNLATWNLML 183
              L     +P E +   W  +L
Sbjct: 787 DETLGFIKVMPVEPDAGVWGALL 809


>gi|449493401|ref|XP_004159278.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g25970-like [Cucumis
           sativus]
          Length = 704

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 194/631 (30%), Positives = 333/631 (52%), Gaps = 19/631 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLYD 99
           ++Y+ N  ++ + K   L SA  LFDEMP RD V++N +I+G   CG        L    
Sbjct: 32  DVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNLEASWDVLRC-- 89

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M S G +    TF S+L   + AG +  G Q+H  ++ +G+  N+Y GS L+D+Y +  
Sbjct: 90  -MRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAENVYAGSALLDMYAKCE 148

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A   F  + + N  +WN M+  + +    +    + + M+ EG + +  ++  ++ 
Sbjct: 149 KLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVDDGTYAPLLP 208

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDV 278
                   +   QLH  +IK G   VN  + NAL+  YS CGSL +AK+ FD    + D+
Sbjct: 209 LLDDADFCNLTSQLHGKIIKHGLELVNT-MCNALITSYSKCGSLDDAKRIFDSSAGIRDL 267

Query: 279 ISWNSIVSIY---ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           ++WNS+++ Y   +  DL F   +L   MQ     P + S+   ++          G+ +
Sbjct: 268 VTWNSLLAAYLLRSQEDLAF---KLLIDMQEHGFEPDLYSYTSIISACFNENISNNGRSL 324

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNV--IESSVAVFESAPGRSLECCNSLMTSLLHS 393
           HG V K GF+  SV + +AL  MY K +   ++ ++ +FES   +     NS++T L  +
Sbjct: 325 HGLVIKRGFEQ-SVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSILTGLSQT 383

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G+ +DAV+ F  M    + +D  + S  L++ S  A+  LG  + +H  A+K G ESN  
Sbjct: 384 GSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLG--QQIHVLALKYGLESNEF 441

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           VS SL+  YS+CG IE + + FE+    + + + ++M GY+++G    ALD+  +M  + 
Sbjct: 442 VSSSLIFMYSKCGIIEDARRSFEEASKNSSITWNALMFGYAQHGQCNVALDLFFLMEXKK 501

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           +  D +TF+ VL  C+H G+V++G      M+S YG+    +HY+C +D+ GR+G L++A
Sbjct: 502 VKMDHITFVAVLTACSHIGLVEQGCKFLRCMESDYGVPPRMEHYACAVDLYGRSGRLEEA 561

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
           + L+++ P   D  +W + L +CR  GN  +  +VA  L+E+EP +   Y  +SN Y  +
Sbjct: 562 KALIEEMPFKPDTTVWKTFLGACRSCGNIELACQVAGHLLEMEPEEHCTYVLLSNMYGNL 621

Query: 634 GEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             ++   +++     R + +  G S IEVN+
Sbjct: 622 MRWDEKAKVKRLMKERGVKKVPGWSWIEVNN 652



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 115/472 (24%), Positives = 219/472 (46%), Gaps = 9/472 (1%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H   + LG   ++Y  + +++ Y +      A  LFDE+P R+  +WN M+         
Sbjct: 21  HSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMRDSVSWNTMIAGHINCGNL 80

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           +    +   M++ G E +  +F  M++G +   +   G+Q+HS +IK+G+ + N++  +A
Sbjct: 81  EASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQVHSIIIKMGYAE-NVYAGSA 139

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L+D Y+ C  L +A  SF  I   + +SWN++++ YA       A  L   M+   ++  
Sbjct: 140 LLDMYAKCEKLEDAYLSFLSISKHNTVSWNAMINGYAQAGDRETAFWLLDCMEQEGEKVD 199

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             ++   L             Q+HG + K G +  +    + +T  Y KC  ++ +  +F
Sbjct: 200 DGTYAPLLPLLDDADFCNLTSQLHGKIIKHGLELVNTMCNALITS-YSKCGSLDDAKRIF 258

Query: 373 ESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           +S+ G R L   NSL+ + L       A ++   M + G   D  + ++ + A      +
Sbjct: 259 DSSAGIRDLVTWNSLLAAYLLRSQEDLAFKLLIDMQEHGFEPDLYSYTSIISACFNENIS 318

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAY--SRCGHIELSHQVFEKIPSPNVVCFTSI 489
           N G  R LH   IK GFE ++ +S +L+  Y  S  G ++ +  +FE +   + V + SI
Sbjct: 319 NNG--RSLHGLVIKRGFEQSVPISNALISMYLKSDYGSMKEALCIFESLEFKDRVSWNSI 376

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + G S+ G   +A+     M    +  D  +F  VL  C+     + GQ + + +   YG
Sbjct: 377 LTGLSQTGSSEDAVKSFLHMRSAAMDIDHYSFSAVLRSCSDLATFQLGQQI-HVLALKYG 435

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           ++++    S +I M  + GI++ A    ++       + W++L+     HG 
Sbjct: 436 LESNEFVSSSLIFMYSKCGIIEDARRSFEEASKNSS-ITWNALMFGYAQHGQ 486



 Score = 46.6 bits (109), Expect = 0.041,   Method: Compositional matrix adjust.
 Identities = 38/152 (25%), Positives = 73/152 (48%), Gaps = 2/152 (1%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A+  S  A L +  L H  A+K G  +++    ++++ Y +C  +  +  +F+++P  
Sbjct: 4   LSAVGTSFRA-LANLLLNHSLAVKLGTIADVYTCNNILNGYWKCKELRSADVLFDEMPMR 62

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           + V + +++ G+   G    + D+L  M   G   D+ TF  +L G   +GM   GQ V 
Sbjct: 63  DSVSWNTMIAGHINCGNLEASWDVLRCMRSCGFELDRYTFGSMLKGIAFAGMFHLGQQV- 121

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           +S+    G   +    S ++DM  +   L+ A
Sbjct: 122 HSIIIKMGYAENVYAGSALLDMYAKCEKLEDA 153


>gi|297838697|ref|XP_002887230.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297333071|gb|EFH63489.1| hypothetical protein ARALYDRAFT_476061 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1347

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 176/615 (28%), Positives = 330/615 (53%), Gaps = 16/615 (2%)

Query: 54   FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
            + ++G+L+ A+K+FD MP RD+V ++ L+S C +     +AL ++  MV  G++  A T 
Sbjct: 704  YGQTGNLSDAEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTM 763

Query: 114  SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             SV+  C+  G       +H ++    F  +  + + L+ +Y + G  + +  +F+++ +
Sbjct: 764  ISVVEGCAELGCLRIARSVHGQITRKMFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAK 823

Query: 174  RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            +N  +W  M+ ++      ++ LR +++M   G+EPN ++   ++  C +  L+ EGK +
Sbjct: 824  KNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSV 883

Query: 234  HSHVIKLGWVDVNI-FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            H   I+   +D N   ++ ALV+ Y+ CG L + +     +   +++ WNS +S+YA   
Sbjct: 884  HGFAIRRE-LDPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRG 942

Query: 293  LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            ++ +AL LF +M   R +P   +    ++    TG V  GKQIHG+V +   D     VQ
Sbjct: 943  MVIEALCLFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRT--DVSDEFVQ 1000

Query: 353  SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
            +++ DMY K   +  +  VF+    RS+   NS++     +GN  +A+ +F +M    + 
Sbjct: 1001 NSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLE 1060

Query: 413  LDEVTLSTTLKALSVSASANLGSCRLLH----CCAIKSGFESNIAVSCSLMDAYSRCGHI 468
            +++VT    ++A S   S   G  R +H     C IK  F        +L+D Y++CG +
Sbjct: 1061 INKVTFLAVIQACSSIGSLEKG--RWVHHKLIVCGIKDLF-----TDTALIDMYAKCGDL 1113

Query: 469  ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
              +  VF  + + ++V ++S++N Y  +G    A+     M++ G  P++V F+ VL+ C
Sbjct: 1114 NTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSAC 1173

Query: 529  NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
             HSG V+EG+  FN MK ++G+  + +H++C ID+L R+G L +A   +++ P   D  +
Sbjct: 1174 GHSGSVEEGKYYFNLMK-LFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASV 1232

Query: 589  WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
            W SL+  CR+H    I + + N + ++   D   Y+ +SN Y+E GE+E   ++R    +
Sbjct: 1233 WGSLVNGCRIHQKMDIIKAIKNDISDIVTDDTGYYTLLSNIYAEEGEWEEFRRMRSAMKS 1292

Query: 649  RKLTRDIGHSLIEVN 663
              L +  G+S IE++
Sbjct: 1293 LNLKKVPGYSAIEID 1307



 Score =  201 bits (512), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 155/599 (25%), Positives = 293/599 (48%), Gaps = 18/599 (3%)

Query: 4    TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
            T+ +P  R+ ++L      +  L + LL+    + +P        + I+ +   G  +S+
Sbjct: 560  TQYMPLFRSCSSL----RLVSQLHAHLLVTGRLRRDP----LPVTKLIESYAFMGSPDSS 611

Query: 64   KKLFDEMPARDMVTYNLLISGCGKFRHP-KQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
            + +F+  P  D   Y +LI  C  + H    A+ LY  +VS   + S   F SVL  C+ 
Sbjct: 612  RLVFEAFPYPDSFMYGVLIK-CNVWCHLLDAAIDLYHRLVSEKTQISKFVFPSVLRACAG 670

Query: 123  AGFY-TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
            +  + + G ++H R++  G   +  I + L+ +Y + G    A  +FD +P R+L  W+ 
Sbjct: 671  SREHLSVGRKVHGRIIKSGVDDDAVIETSLLCMYGQTGNLSDAEKVFDGMPVRDLVAWST 730

Query: 182  MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
            ++ +  E     + LRM+  M  +GVEP+ ++   +V GC+    L   + +H  + +  
Sbjct: 731  LVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAELGCLRIARSVHGQITR-K 789

Query: 242  WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
              D +  + N+L+  YS CG L+ ++K F+ I   + +SW +++S Y   +    AL  F
Sbjct: 790  MFDFDETLCNSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSF 849

Query: 302  FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
              M      P++ +    L+     G +  GK +HG+  +   D     +  AL ++Y +
Sbjct: 850  SEMLKSGIEPNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAE 909

Query: 362  CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
            C  +     +      R++   NS ++   H G + +A+ +F  MV   I  D  TL++ 
Sbjct: 910  CGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASI 969

Query: 422  LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
            + A   +    LG  + +H   I++   S+  V  S++D YS+ G + L+  VF++I   
Sbjct: 970  ISACENTGLVRLG--KQIHGHVIRTDV-SDEFVQNSVIDMYSKSGFVNLACTVFDQIKHR 1026

Query: 482  NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
            ++V + S++ G+S+NG   EA+++ + M    L  +KVTFL V+  C+  G +++G+ V 
Sbjct: 1027 SIVTWNSMLCGFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVH 1086

Query: 542  NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            + +  V GI  D    + +IDM  + G L+ AE + +        + WSS++ +  +HG
Sbjct: 1087 HKL-IVCGI-KDLFTDTALIDMYAKCGDLNTAETVFRAM-SNRSIVSWSSMINAYGMHG 1142



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 111/447 (24%), Positives = 203/447 (45%), Gaps = 8/447 (1%)

Query: 48   NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
            N  +  + K G L S++K+F+++  ++ V++  +IS   +    ++AL  + EM+  GI+
Sbjct: 799  NSLLTMYSKCGDLLSSEKIFEKIAKKNAVSWTAMISSYNRGEFSEKALRSFSEMLKSGIE 858

Query: 108  ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP-LVDLYMRMGPSVRALD 166
             +  T  S+LS C   G   EG  +H   +      N    SP LV+LY   G       
Sbjct: 859  PNLVTLYSILSSCGLNGLIREGKSVHGFAIRRELDPNYESLSPALVELYAECGRLGDCET 918

Query: 167  LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
            +   + +RN+  WN  +  +       E L ++ +M    ++P+  +   ++  C    L
Sbjct: 919  ILHVVGDRNIVLWNSHISLYAHRGMVIEALCLFRQMVTWRIKPDSFTLASIISACENTGL 978

Query: 227  LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
            +  GKQ+H HVI+    D   FV N+++D YS  G +  A   FD I    +++WNS++ 
Sbjct: 979  VRLGKQIHGHVIRTDVSDE--FVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLC 1036

Query: 287  IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
             ++      +A+ LF  M       +  +F+  +   S  G++  G+ +H  +   G   
Sbjct: 1037 GFSQNGNSLEAINLFDYMYHSCLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIK- 1095

Query: 347  GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
              +   +AL DMY KC  + ++  VF +   RS+   +S++ +    G I  A+  F  M
Sbjct: 1096 -DLFTDTALIDMYAKCGDLNTAETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQM 1154

Query: 407  VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            V+ G   +EV     L A   S S   G  +         G   N       +D  SR G
Sbjct: 1155 VESGTKPNEVVFMNVLSACGHSGSVEEG--KYYFNLMKLFGVSPNSEHFACFIDLLSRSG 1212

Query: 467  HIELSHQVFEKIPS-PNVVCFTSIMNG 492
             ++ +++  +++P   +   + S++NG
Sbjct: 1213 DLKEAYRTIKEMPFLADASVWGSLVNG 1239



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/459 (23%), Positives = 221/459 (48%), Gaps = 13/459 (2%)

Query: 149  SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR--AFCELSRPDEVLRMYNKMKAEG 206
            + L++ Y  MG    +  +F+  P  +   + ++++   +C L   D  + +Y+++ +E 
Sbjct: 596  TKLIESYAFMGSPDSSRLVFEAFPYPDSFMYGVLIKCNVWCHLL--DAAIDLYHRLVSEK 653

Query: 207  VEPNGLSFCYMVRGCSIGML-LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
             + +   F  ++R C+     L  G+++H  +IK G VD +  +  +L+  Y   G+L +
Sbjct: 654  TQISKFVFPSVLRACAGSREHLSVGRKVHGRIIKSG-VDDDAVIETSLLCMYGQTGNLSD 712

Query: 266  AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
            A+K FD +PV D+++W+++VS   +   +  AL +F  M      P   + +  +   + 
Sbjct: 713  AEKVFDGMPVRDLVAWSTLVSSCLENCEVLKALRMFKCMVDDGVEPDAVTMISVVEGCAE 772

Query: 326  TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
             G +   + +HG +T+  FD       S LT MY KC  + SS  +FE    ++     +
Sbjct: 773  LGCLRIARSVHGQITRKMFDFDETLCNSLLT-MYSKCGDLLSSEKIFEKIAKKNAVSWTA 831

Query: 386  LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
            +++S       + A+  F  M+  GI  + VTL + L +  ++     G  + +H  AI+
Sbjct: 832  MISSYNRGEFSEKALRSFSEMLKSGIEPNLVTLYSILSSCGLNGLIREG--KSVHGFAIR 889

Query: 446  SGFESNI-AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
               + N  ++S +L++ Y+ CG +     +   +   N+V + S ++ Y+  GM  EAL 
Sbjct: 890  RELDPNYESLSPALVELYAECGRLGDCETILHVVGDRNIVLWNSHISLYAHRGMVIEALC 949

Query: 505  MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
            +   M+   + PD  T   +++ C ++G+V+ G+ +   +      D   Q  + +IDM 
Sbjct: 950  LFRQMVTWRIKPDSFTLASIISACENTGLVRLGKQIHGHVIRTDVSDEFVQ--NSVIDMY 1007

Query: 565  GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
             ++G ++ A  +  Q       + W+S+L     +GN +
Sbjct: 1008 SKSGFVNLACTVFDQIKHRS-IVTWNSMLCGFSQNGNSL 1045



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 68/254 (26%), Positives = 130/254 (51%), Gaps = 6/254 (2%)

Query: 45   YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
            +  N  ID + KSG +N A  +FD++  R +VT+N ++ G  +  +  +A+ L+D M   
Sbjct: 998  FVQNSVIDMYSKSGFVNLACTVFDQIKHRSIVTWNSMLCGFSQNGNSLEAINLFDYMYHS 1057

Query: 105  GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
             ++ +  TF +V+  CS+ G   +G  +H +++  G   +L+  + L+D+Y + G    A
Sbjct: 1058 CLEINKVTFLAVIQACSSIGSLEKGRWVHHKLIVCGIK-DLFTDTALIDMYAKCGDLNTA 1116

Query: 165  LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
              +F  +  R++ +W+ M+ A+    R    +  +N+M   G +PN + F  ++  C   
Sbjct: 1117 ETVFRAMSNRSIVSWSSMINAYGMHGRIGSAISTFNQMVESGTKPNEVVFMNVLSACGHS 1176

Query: 225  MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNS 283
              ++EGK  + +++KL  V  N       +D  S  G L EA ++   +P + D   W S
Sbjct: 1177 GSVEEGK-YYFNLMKLFGVSPNSEHFACFIDLLSRSGDLKEAYRTIKEMPFLADASVWGS 1235

Query: 284  IVS---IYADYDLI 294
            +V+   I+   D+I
Sbjct: 1236 LVNGCRIHQKMDII 1249


>gi|413943926|gb|AFW76575.1| hypothetical protein ZEAMMB73_444227 [Zea mays]
          Length = 869

 Score =  305 bits (782), Expect = 4e-80,   Method: Compositional matrix adjust.
 Identities = 207/648 (31%), Positives = 336/648 (51%), Gaps = 34/648 (5%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  +  + + G L +A  LF+ MP+RD VT+N LI+    FR    AL    +M+  G 
Sbjct: 99  ANALLTAYARCGDLTAALALFNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGH 158

Query: 107 KESASTFSSVLSVCSN-AGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVR 163
             S+ T  SVL  CS+ A     G + H   L  GF  G   +  + L+ +Y R+G    
Sbjct: 159 PLSSFTLVSVLLACSHLAEDLRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDD 218

Query: 164 ALDLFDEL-----PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           A  LF  +     P   + TWN M+    +  R  E + +   M A GV P+G++F   +
Sbjct: 219 AQMLFGSVDTTDSPGGGVVTWNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASAL 278

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-- 276
             CS   +L  G+++H++V+K   +  N FVA+ALVD Y++   +  A++ FD +P    
Sbjct: 279 PACSQLEMLSLGREMHAYVLKDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHR 338

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +  WN++V  YA   +  +ALELF RM+      PS  +    L   +R+      + +
Sbjct: 339 QLGLWNAMVCGYAQAGMDEEALELFARMEAEAGVVPSETTIAGVLPACARSETFAGKEAV 398

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HGYV K G       VQ+AL D+Y +   +E++  +F +   R +   N+L+T  +  G+
Sbjct: 399 HGYVLKRGMADNPF-VQNALMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGH 457

Query: 396 IKDAVEMFGFMVDEG-----------IGLDE-------VTLSTTLKALSVSASANLGSCR 437
           I DA ++   M  +G            G DE       VTL T L   ++ A+   G  +
Sbjct: 458 IHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKG--K 515

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H  A++   +S+IAV  +L+D Y++CG + LS  VF+++P  NV+ +  ++  Y  +G
Sbjct: 516 EIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRAVFDRLPKRNVITWNVLIMAYGMHG 575

Query: 498 MGREALDMLEVMIQRG-LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
           +G EA+ + + M+      P++VTF+  LA C+HSGMV  G  +F+SMK  +G+      
Sbjct: 576 LGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSGMVDRGMELFHSMKRNHGVQPTPDL 635

Query: 557 YSCMIDMLGRAGILDKAEELLQQ-TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           ++C +D+LGRAG LD+A  ++    PG      WSS L +CR+H N  +G   A  L +L
Sbjct: 636 HACAVDILGRAGRLDEAYSIITSMEPGEQQVSAWSSFLGACRLHRNVPLGEIAAERLFQL 695

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           EP + + Y  + N YS  G +E S ++R     R ++++ G S IE++
Sbjct: 696 EPDEASHYVLLCNIYSAAGLWEKSSEVRNRMRQRGVSKEPGCSWIELD 743



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 236/522 (45%), Gaps = 42/522 (8%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           +SA+   S+++V S  G       +H        G    + + L+  Y R G    AL L
Sbjct: 67  KSAAALRSLIAVRSIHGAALRRDLLH--------GFTPAVANALLTAYARCGDLTAALAL 118

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGML 226
           F+ +P R+  T+N ++ A C   R    L     M  EG   +  +   ++  CS +   
Sbjct: 119 FNAMPSRDAVTFNSLIAALCLFRRWLPALDALRDMLLEGHPLSSFTLVSVLLACSHLAED 178

Query: 227 LDEGKQLHSHVIKLGWVDVN-IFVANALVDFYSACGSLIEAKKSFDFIPVDD-----VIS 280
           L  G++ H+  +K G++D +  F  NAL+  Y+  G + +A+  F  +   D     V++
Sbjct: 179 LRLGREAHAFALKNGFLDGDERFAFNALLSMYARLGLVDDAQMLFGSVDTTDSPGGGVVT 238

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN++VS+        +A+E+ + M     RP   +F   L   S+   +  G+++H YV 
Sbjct: 239 WNTMVSLLVQSGRCGEAIEVIYDMVARGVRPDGITFASALPACSQLEMLSLGREMHAYVL 298

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG--RSLECCNSLMTSLLHSGNIKD 398
           K      +  V SAL DMY     +  +  VF+  PG  R L   N+++     +G  ++
Sbjct: 299 KDSDLAANSFVASALVDMYASHERVGVARRVFDMVPGGHRQLGLWNAMVCGYAQAGMDEE 358

Query: 399 AVEMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           A+E+F  M  E G+   E T++  L A + S +        +H   +K G   N  V  +
Sbjct: 359 ALELFARMEAEAGVVPSETTIAGVLPACARSET--FAGKEAVHGYVLKRGMADNPFVQNA 416

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG---- 513
           LMD Y+R G +E +  +F  I   +VV + +++ G    G   +A  ++  M Q+G    
Sbjct: 417 LMDLYARLGDMEAARWIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTD 476

Query: 514 --------------LIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYS 558
                         ++P+ VT + +L GC       +G+ +   +M+  + +D+D    S
Sbjct: 477 ATTEDGIAGTDEEPVVPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMR--HALDSDIAVGS 534

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            ++DM  + G L  +  +  + P   + + W+ L+ +  +HG
Sbjct: 535 ALVDMYAKCGCLALSRAVFDRLP-KRNVITWNVLIMAYGMHG 575



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 68/281 (24%), Positives = 122/281 (43%), Gaps = 20/281 (7%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAK 64
           ++P   TI  + P C      +    +  Y        N +  N  +D + + G + +A+
Sbjct: 372 VVPSETTIAGVLPACARSETFAGKEAVHGYVLKRGMADNPFVQNALMDLYARLGDMEAAR 431

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS------------- 111
            +F  +  RD+V++N LI+GC    H   A  L  EM   G    A+             
Sbjct: 432 WIFAAIEPRDVVSWNTLITGCVVQGHIHDAFQLVREMQQQGRFTDATTEDGIAGTDEEPV 491

Query: 112 -----TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                T  ++L  C+      +G +IH   +      ++ +GS LVD+Y + G    +  
Sbjct: 492 VPNNVTLMTLLPGCAMLAAPAKGKEIHGYAMRHALDSDIAVGSALVDMYAKCGCLALSRA 551

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGM 225
           +FD LP+RN+ TWN+++ A+      DE + ++++M  +   +PN ++F   +  CS   
Sbjct: 552 VFDRLPKRNVITWNVLIMAYGMHGLGDEAIALFDRMVMSNEAKPNEVTFIAALAACSHSG 611

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           ++D G +L   + +   V     +    VD     G L EA
Sbjct: 612 MVDRGMELFHSMKRNHGVQPTPDLHACAVDILGRAGRLDEA 652


>gi|115456537|ref|NP_001051869.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|41469627|gb|AAS07350.1| putative pentatricopeptide repeat domain contianing protein [Oryza
           sativa Japonica Group]
 gi|113550340|dbj|BAF13783.1| Os03g0844000 [Oryza sativa Japonica Group]
 gi|215686748|dbj|BAG89598.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 702

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 192/645 (29%), Positives = 332/645 (51%), Gaps = 23/645 (3%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           L S+   D+ C  +P  ++    + ++  VKSG L  A  LFD MP +++V +  ++SG 
Sbjct: 32  LCSAAAADNGCAESP--DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGY 89

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
            +   P+ AL ++ +MV  G+  +    ++ L  C++ G    G Q+H   +  GF  + 
Sbjct: 90  TRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDA 149

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           +IGS L+++Y R G    A ++FD +   ++  +  ++ AFC     +       +M  +
Sbjct: 150 WIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQ 209

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLI 264
           G++PN  +   ++  C   +    G+Q+H ++IK +G    +++ + AL+DFYS  G   
Sbjct: 210 GLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFK 265

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA- 323
            AK  FD +   +V+SW S++ +Y     + +AL++F  M        I   V+   FA 
Sbjct: 266 LAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDM--------ISEGVDPNEFAL 317

Query: 324 ----SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
                  G++  G+Q+H    K       + V +AL  MYG+  ++E   A+        
Sbjct: 318 SIVLGACGSIGLGRQLHCSAIKHDL-ITDIRVSNALLSMYGRTGLVEELEAMLNKIENPD 376

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           L    + +++   +G  + A+ +   M  EG   +    S+ L + +  AS + G     
Sbjct: 377 LVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQG--MQF 434

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           HC A+K G +S I    +L++ YS+CG +  +   F+ + + +V  + S+++G++++G  
Sbjct: 435 HCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDA 494

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            +AL++   M   G+ PD  TFL VL GCNHSGMV+EG+L F  M   Y       HY+C
Sbjct: 495 NKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYAC 554

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           MIDMLGR G  D+A  ++   P   D ++W +LL SC++H N  IG+  A+ LMEL   D
Sbjct: 555 MIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRD 614

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            A Y  +SN Y+  GE+E + ++R       + +D G S IE+N+
Sbjct: 615 SASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINN 659


>gi|357520433|ref|XP_003630505.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355524527|gb|AET04981.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 998

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 180/622 (28%), Positives = 326/622 (52%), Gaps = 5/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y     ID + K   ++ A+ LFD +  +   T+  +I+G  K    + +L L+D+M 
Sbjct: 175 DVYVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMK 234

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +       SSVLS C    F   G QIHC VL  G  +++ + +  +D Y +     
Sbjct: 235 EGHVCPDKYVLSSVLSACLMLKFLEGGKQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQ 294

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               LFD + ++N+ +W  ++    + S   + L ++ +M   G  P+      ++  C 
Sbjct: 295 LGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCG 354

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
             + L++G+Q+H++ IK+  +D + FV N L+D Y+ C SL +A+K F+ +   D++S+N
Sbjct: 355 SLVALEKGRQVHAYAIKVN-IDNDDFVKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYN 413

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y+  D + +AL+LF  M+L    P++  FV  L  ++   ++    QIHG + K 
Sbjct: 414 AMIEGYSRQDKLCEALDLFREMRLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKY 473

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G         SAL D+Y KC+ +  +  VFE    + +    ++ +        ++++++
Sbjct: 474 GVSLDEF-AGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKL 532

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           +  +    +  +E T +  + A S  AS   G  +  H   IK GF+ +  V+ +L+D Y
Sbjct: 533 YKCLQMSRLKPNEFTFAAVITAASNIASLRHG--QQFHNQVIKMGFDDDPFVANTLVDMY 590

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++ G IE +H+ F      +  C+ S++  Y+++G   +AL + E MI  GL P+ VTF+
Sbjct: 591 AKSGSIEEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFV 650

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C+H+G++  G   F+SM S +GI+   +HY CM+ +LGRAG L +A+E +++ P 
Sbjct: 651 GVLSACSHTGLLDLGFDHFDSM-SQFGIEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPI 709

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
               ++W SLL +CRV GN  +G   A + +   P D   Y  +SN ++  G +    ++
Sbjct: 710 KQAAVVWRSLLSACRVSGNVELGTYAAEMAISCNPADSGSYVLLSNIFASKGMWVNVRRL 769

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           RE      + ++ G S IEVN+
Sbjct: 770 REKMDISGVVKEPGCSWIEVNN 791



 Score =  205 bits (522), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 149/579 (25%), Positives = 279/579 (48%), Gaps = 11/579 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE-M 101
           +I+  N  +  + K   +N A KLFD M  +++VT++ ++S      H  +AL L+ + M
Sbjct: 73  DIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTHHSHCLEALMLFVQFM 132

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            S   K +    +SV+  C+  G     +QIH  V+  G+  ++Y+ + L+D Y +    
Sbjct: 133 RSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQDVYVCTSLIDFYTKHACI 192

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LFD L  +   TW  ++  + +  R    L+++++MK   V P+      ++  C
Sbjct: 193 DDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEGHVCPDKYVLSSVLSAC 252

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
            +   L+ GKQ+H +V++ G V +++ + N  +DFY  C  +   +K FD +   +V+SW
Sbjct: 253 LMLKFLEGGKQIHCYVLRSGIV-MDVSMVNGFIDFYFKCHKVQLGRKLFDRMVDKNVVSW 311

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            ++++         DAL+LF  M      P        LN       +  G+Q+H Y  K
Sbjct: 312 TTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCGSLVALEKGRQVHAYAIK 371

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           +  D+    V++ L DMY KC+ +  +  VF       L   N+++        + +A++
Sbjct: 372 VNIDNDDF-VKNGLIDMYAKCDSLTDARKVFNLMAAIDLVSYNAMIEGYSRQDKLCEALD 430

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASA-NLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           +F  M    + L   TL   +  L VSAS  +L     +H   IK G   +     +L+D
Sbjct: 431 LFREM---RLSLSSPTLLIFVSLLGVSASLYHLELSNQIHGLIIKYGVSLDEFAGSALID 487

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+C  +  +  VFE+I   ++V +T++ +GY++     E+L + + +    L P++ T
Sbjct: 488 VYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCLQMSRLKPNEFT 547

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F  V+   ++   ++ GQ   N +  + G D D    + ++DM  ++G +++A +    T
Sbjct: 548 FAAVITAASNIASLRHGQQFHNQVIKM-GFDDDPFVANTLVDMYAKSGSIEEAHKAFIST 606

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRV-ANILME-LEP 617
               D   W+S++ +   HG      +V  +++ME L+P
Sbjct: 607 -NWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKP 644



 Score =  125 bits (313), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/348 (25%), Positives = 173/348 (49%), Gaps = 5/348 (1%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++HS ++  G+   +IF+ N L+  YS    +  A K FD +   ++++W+S+VS+Y  
Sbjct: 58  KKIHSKIVVFGFHKHDIFLVNTLLHAYSKLNLVNHANKLFDTMSHKNLVTWSSMVSMYTH 117

Query: 291 YDLIFDALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           +    +AL LF + M+ C ++P+       +   ++ G +    QIHG V K G+    V
Sbjct: 118 HSHCLEALMLFVQFMRSCNEKPNEYILASVVRACTQFGGLNPALQIHGLVVKGGYVQ-DV 176

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
           +V ++L D Y K   I+ +  +F+    ++     +++      G  + ++++F  M + 
Sbjct: 177 YVCTSLIDFYTKHACIDDARLLFDGLQVKTSFTWTTIIAGYSKQGRSQVSLKLFDQMKEG 236

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  D+  LS+ L A  +      G  + +HC  ++SG   ++++    +D Y +C  ++
Sbjct: 237 HVCPDKYVLSSVLSACLMLKFLEGG--KQIHCYVLRSGIVMDVSMVNGFIDFYFKCHKVQ 294

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           L  ++F+++   NVV +T+++ G  +N   R+ALD+   M + G  PD      VL  C 
Sbjct: 295 LGRKLFDRMVDKNVVSWTTVIAGCMQNSFHRDALDLFVEMARMGWNPDAFGCTSVLNSCG 354

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
               +++G+ V      V  ID D    + +IDM  +   L  A ++ 
Sbjct: 355 SLVALEKGRQVHAYAIKV-NIDNDDFVKNGLIDMYAKCDSLTDARKVF 401



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/246 (25%), Positives = 124/246 (50%), Gaps = 2/246 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+ ++ +  ID + K   +  A+ +F+E+  +D+V +  + SG  +    +++L LY  +
Sbjct: 477 LDEFAGSALIDVYSKCSRVGDARLVFEEIQDKDIVVWTAMFSGYTQQSENEESLKLYKCL 536

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +K +  TF++V++  SN      G Q H +V+ +GF  + ++ + LVD+Y + G  
Sbjct: 537 QMSRLKPNEFTFAAVITAASNIASLRHGQQFHNQVIKMGFDDDPFVANTLVDMYAKSGSI 596

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   F     ++ A WN M+  + +    ++ L+++  M  EG++PN ++F  ++  C
Sbjct: 597 EEAHKAFISTNWKDTACWNSMIATYAQHGEAEKALQVFEDMIMEGLKPNYVTFVGVLSAC 656

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD-VIS 280
           S   LLD G      + + G ++  I     +V      G L EAK+  + +P+    + 
Sbjct: 657 SHTGLLDLGFDHFDSMSQFG-IEPGIEHYVCMVSLLGRAGKLYEAKEFIEKMPIKQAAVV 715

Query: 281 WNSIVS 286
           W S++S
Sbjct: 716 WRSLLS 721


>gi|125529330|gb|EAY77444.1| hypothetical protein OsI_05438 [Oryza sativa Indica Group]
          Length = 813

 Score =  305 bits (781), Expect = 5e-80,   Method: Compositional matrix adjust.
 Identities = 181/627 (28%), Positives = 319/627 (50%), Gaps = 21/627 (3%)

Query: 53  DFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA--LYLYDEMVSHGIKESA 110
           D + SGHL+ A  LFD++P+ D+ TYN LI           A  L+LY  M+ H +  + 
Sbjct: 66  DHIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF   L  CS    +  G  IH   +  G   +L++ + L+D+Y++      A  +F  
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLR--MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           +P R+L  WN ML  +         +   +  +M+   + PN  +   ++   +    L 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 229 EGKQLHSHVIKL---------GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           +G  +H++ I+            +   + +  AL+D Y+ CGSL+ A++ FD +P  + +
Sbjct: 246 QGTSVHAYRIRACLHSNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 280 SWNSIVSIYADYDLIFDALELFFRM---QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +W++++  +     +  A  LF  M    LC   P+  S    L   +   ++  G+Q+H
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLH 363

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             + K G  H  +   ++L  MY K  +I+ ++A+F+    +     ++L++  + +G  
Sbjct: 364 ALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 422

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++A  +F  M    +  D  T+ + + A S  A+   G C   H   I  G  S  ++  
Sbjct: 423 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS--HGSVIIRGLASETSICN 480

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG I+LS QVF  +PS ++V + +++ GY  +G+G+EA  +   M   G  P
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D VTF+C+L+ C+HSG+V EG+  F+ M+  YG+    +HY CM+D+L R G LD+A E 
Sbjct: 541 DGVTFICLLSACSHSGLVIEGKHWFHVMRHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 600

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +Q  P   D  +W +LL +CRV+ N  +G++V+ ++ EL P     +  +SN YS  G F
Sbjct: 601 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRF 660

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
           + + ++R     +   +  G S IE+N
Sbjct: 661 DEAAEVRIIQKVQGFKKSPGCSWIEIN 687



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 221/492 (44%), Gaps = 24/492 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK--FRHPKQALYLY 98
           Q +++ S   +D +VK   L  A  +F  MPARD+V +N +++G       H   A  L 
Sbjct: 157 QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 216

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN----------LYIG 148
            +M  H ++ +AST  ++L + +  G   +G  +H   +      N          + +G
Sbjct: 217 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYRIRACLHSNRNSKSKLTDGVLLG 276

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-- 206
           + L+D+Y + G  + A  +FD +P RN  TW+ ++  F   SR  +   ++  M A+G  
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 207 -VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            + P   S    +R C+    L  G+QLH+ + K G V  ++   N+L+  Y+  G + +
Sbjct: 337 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQ 393

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A   FD + V D +S++++VS Y       +A  +F +MQ C   P   + V  +   S 
Sbjct: 394 AIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 453

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  G+  HG V   G       + +AL DMY KC  I+ S  VF   P R +   N+
Sbjct: 454 LAALQHGRCSHGSVIIRGLA-SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 512

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++      G  K+A  +F  M + G   D VT    L A S S     G     H     
Sbjct: 513 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK-HWFHVMRHG 571

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGRE 501
            G    +     ++D  SR G ++ +++  + +P   +V  + +++     Y    +G++
Sbjct: 572 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 631

Query: 502 ALDMLEVMIQRG 513
              M++ +   G
Sbjct: 632 VSRMIQELGPEG 643


>gi|449449950|ref|XP_004142727.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Cucumis sativus]
          Length = 712

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 182/625 (29%), Positives = 330/625 (52%), Gaps = 7/625 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++++  +N  +   VK+ HL  A+ LFD++P RD V++  +ISG        +AL L+ +
Sbjct: 46  KVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSK 105

Query: 101 M-VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           M +   ++      S  L  C     Y  G  +H   +  G   ++++GS L+D+YM++G
Sbjct: 106 MRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKTGLVNSVFVGSALLDMYMKIG 165

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
              R+  +FDE+P RN  TW  ++         +  L  ++ M    VE +  ++   ++
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +    L+ G+ +H+  +K G+ D N FVAN+L   Y+ CG L     +F  +   DV+
Sbjct: 226 ASADSGALNHGRSIHTQTLKKGF-DENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVV 284

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +IV+ Y         L+ F RM+     P+  +F   ++  +    + +G+Q+H +V
Sbjct: 285 SWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             +GF + ++ V +++  +Y KC  + S   VF S   R +   ++++ +    G  ++A
Sbjct: 345 LCVGFVN-ALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEA 403

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            E    M  EG   +E  L++ L   SV  S A L   + LH   +  G E    V  +L
Sbjct: 404 FEYLSRMRSEGPKPNEFALASVL---SVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSAL 460

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG I  + ++F      +++ +T++++GY+ +G  +EA+++ E + + GL PD 
Sbjct: 461 IIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDS 520

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ VL  C+H+GMV  G   FNSM   Y I   ++HY CMID+L RAG L  AE L++
Sbjct: 521 VTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIR 580

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   D ++WS+LLR+CR+HG+   G+R A  +++L+P     +  ++N ++  G+++ 
Sbjct: 581 SMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKE 640

Query: 639 SMQIRETALARKLTRDIGHSLIEVN 663
           +  IR    ++ + ++ G S ++V 
Sbjct: 641 AANIRMLMKSKGVVKEPGWSSVKVK 665


>gi|356532944|ref|XP_003535029.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 813

 Score =  305 bits (781), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 187/665 (28%), Positives = 354/665 (53%), Gaps = 7/665 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSI--VPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSG 58
           ML + + P   T   +   C  +  VPL   ++ D+       +++++ +  I  +  +G
Sbjct: 103 MLGSNVSPDKYTFPYVIKACGGLNNVPLCM-VVHDTARSLGFHVDLFAGSALIKLYADNG 161

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           ++  A+++FDE+P RD + +N+++ G  K      A+  + EM +     ++ T++ +LS
Sbjct: 162 YIRDARRVFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILS 221

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           +C+  G +  G Q+H  V+  GF  +  + + LV +Y + G  + A  LF+ +P+ +  T
Sbjct: 222 ICATRGNFCAGTQLHGLVIGSGFEFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVT 281

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN ++  + +    DE   ++N M + GV+P+ ++F   +        L   K++HS+++
Sbjct: 282 WNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIV 341

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           +   V  ++++ +AL+D Y   G +  A+K F    + DV    +++S Y  + L  DA+
Sbjct: 342 RHR-VPFDVYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNIDAI 400

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
             F  +       +  +    L   +    +  GK++H ++ K   ++  V+V SA+TDM
Sbjct: 401 NTFRWLIQEGMVTNSLTMASVLPACAAVAALKPGKELHCHILKKRLEN-IVNVGSAITDM 459

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y KC  ++ +   F     R   C NS+++S   +G  + A+++F  M   G   D V+L
Sbjct: 460 YAKCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSL 519

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           S+ L A +   +   G  + +H   I++ F S+  V+ +L+D YS+CG++ L+  VF  +
Sbjct: 520 SSALSAAANLPALYYG--KEMHGYVIRNAFSSDTFVASTLIDMYSKCGNLALAWCVFNLM 577

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              N V + SI+  Y  +G  RE LD+   M++ G+ PD VTFL +++ C H+G+V EG 
Sbjct: 578 DGKNEVSWNSIIAAYGNHGCPRECLDLYHEMLRAGIHPDHVTFLVIISACGHAGLVDEGI 637

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F+ M   YGI A  +HY+CM+D+ GRAG + +A + ++  P   D  +W +LL +CR+
Sbjct: 638 HYFHCMTREYGIGARMEHYACMVDLYGRAGRVHEAFDTIKSMPFTPDAGVWGTLLGACRL 697

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           HGN  + +  +  L+EL+P +   Y  +SN +++ GE+   +++R     + + +  G+S
Sbjct: 698 HGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWASVLKVRSLMKEKGVQKIPGYS 757

Query: 659 LIEVN 663
            I+VN
Sbjct: 758 WIDVN 762



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/562 (27%), Positives = 274/562 (48%), Gaps = 22/562 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           S+R +  +V  G    A  LF E+  R  + +N +I G         AL  Y +M+   +
Sbjct: 49  SSRVLGLYVLCGRFRDAGNLFFELELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNV 108

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                TF  V+  C         + +H    SLGF ++L+ GS L+ LY   G    A  
Sbjct: 109 SPDKYTFPYVIKACGGLNNVPLCMVVHDTARSLGFHVDLFAGSALIKLYADNGYIRDARR 168

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FDELP R+   WN+MLR + +    D  +  + +M+      N +++  ++  C+    
Sbjct: 169 VFDELPLRDTILWNVMLRGYVKSGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGN 228

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
              G QLH  VI  G+ + +  VAN LV  YS CG+L+ A+K F+ +P  D ++WN +++
Sbjct: 229 FCAGTQLHGLVIGSGF-EFDPQVANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIA 287

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT--KLGF 344
            Y       +A  LF  M     +P   +F  FL     +G++   K++H Y+   ++ F
Sbjct: 288 GYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPF 347

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS-LLHSGNIKDAVEMF 403
           D   V+++SAL D+Y K   +E +  +F+      +  C ++++  +LH  NI DA+  F
Sbjct: 348 D---VYLKSALIDVYFKGGDVEMARKIFQQNILVDVAVCTAMISGYVLHGLNI-DAINTF 403

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
            +++ EG+  + +T+++ L A +  A+   G  + LHC  +K   E+ + V  ++ D Y+
Sbjct: 404 RWLIQEGMVTNSLTMASVLPACAAVAALKPG--KELHCHILKKRLENIVNVGSAITDMYA 461

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG ++L+++ F ++   + VC+ S+++ +S+NG    A+D+   M   G   D V+   
Sbjct: 462 KCGRLDLAYEFFRRMSDRDSVCWNSMISSFSQNGKPEIAIDLFRQMGMSGAKFDSVSLSS 521

Query: 524 VLAGCN-----HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            L+        + G    G ++ N+  S      D    S +IDM  + G L  A  +  
Sbjct: 522 ALSAAANLPALYYGKEMHGYVIRNAFSS------DTFVASTLIDMYSKCGNLALAWCVFN 575

Query: 579 QTPGGGDCMMWSSLLRSCRVHG 600
              G  + + W+S++ +   HG
Sbjct: 576 LMDGKNE-VSWNSIIAAYGNHG 596



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 124/500 (24%), Positives = 233/500 (46%), Gaps = 16/500 (3%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +   S+   CS+A    +  Q+H +V+  G G      S ++ LY+  G    A +LF E
Sbjct: 12  TQLESLFRACSDASMVQQARQVHTQVIVGGMGDVCAPSSRVLGLYVLCGRFRDAGNLFFE 71

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           L  R    WN M+R    L   D  L  Y KM    V P+  +F Y+++ C     +   
Sbjct: 72  LELRYALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLC 131

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +H     LG+  V++F  +AL+  Y+  G + +A++ FD +P+ D I WN ++  Y  
Sbjct: 132 MVVHDTARSLGF-HVDLFAGSALIKLYADNGYIRDARRVFDELPLRDTILWNVMLRGYVK 190

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +A+  F  M+      +  ++   L+  +  GN   G Q+HG V   GF+     
Sbjct: 191 SGDFDNAIGTFCEMRTSYSMVNSVTYTCILSICATRGNFCAGTQLHGLVIGSGFEFDP-Q 249

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V + L  MY KC  +  +  +F + P       N L+   + +G   +A  +F  M+  G
Sbjct: 250 VANTLVAMYSKCGNLLYARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAG 309

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D VT ++ L   S+  S +L  C+ +H   ++     ++ +  +L+D Y + G +E+
Sbjct: 310 VKPDSVTFASFLP--SILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDVYFKGGDVEM 367

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + ++F++    +V   T++++GY  +G+  +A++    +IQ G++ + +T   VL  C  
Sbjct: 368 ARKIFQQNILVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVTNSLTMASVLPACAA 427

Query: 531 SGMVKEGQ-----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
              +K G+     ++   ++++  +       S + DM  + G LD A E  ++     D
Sbjct: 428 VAALKPGKELHCHILKKRLENIVNVG------SAITDMYAKCGRLDLAYEFFRRM-SDRD 480

Query: 586 CMMWSSLLRSCRVHGNEIIG 605
            + W+S++ S   +G   I 
Sbjct: 481 SVCWNSMISSFSQNGKPEIA 500


>gi|115473985|ref|NP_001060591.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|22831115|dbj|BAC15976.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|50510078|dbj|BAD30730.1| selenium-binding protein-like protein [Oryza sativa Japonica Group]
 gi|113612127|dbj|BAF22505.1| Os07g0670000 [Oryza sativa Japonica Group]
 gi|125559550|gb|EAZ05086.1| hypothetical protein OsI_27276 [Oryza sativa Indica Group]
          Length = 726

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 184/627 (29%), Positives = 329/627 (52%), Gaps = 26/627 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG- 105
           +N     + K+G   SA  +F    ARD+ +YN ++S    F  P +AL     M+  G 
Sbjct: 70  TNSLAARYAKTGSFPSAVGVFAAARARDVSSYNTILSA---FPDPAEALDFASWMLRSGA 126

Query: 106 IKESASTFSSVLSVCSNAGFYTEGI---QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           ++  A T +  LS+ +  G   EG    Q+H      G   ++++G+ LV  Y R G   
Sbjct: 127 VRPDAVTCTVALSLAAGRG---EGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGGSLG 183

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSR----PDEVLRMYNKMKAEG-VEPNGLSFCYM 217
            A  +FD++P R+L +WN ++   C L++    P EV+ ++ +M  +G V+P+ +S C +
Sbjct: 184 EARSVFDDMPARDLVSWNALI---CGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSV 240

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C     L+ G+Q+H   +KLG V+  + + N LV  Y  CG+   A++ FD +   D
Sbjct: 241 IPACGGEGKLELGRQVHGFAVKLG-VEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERD 299

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V+SW + +S+  +     DAL LF  M+     P+  +FV  ++           + +H 
Sbjct: 300 VVSWTTAISMDGE-----DALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQMVHA 354

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
              K     G     ++L  MY K   ++ +  VF+  P R +   N++++    +G   
Sbjct: 355 ACLKAAVS-GEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNGRCN 413

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           DA+E+F  M    +  +E T ++ L A++   + ++   ++ H  A+  GF  +  V+ +
Sbjct: 414 DALELFSSMA-RCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYVAGA 472

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++ G++E S + F +    +++ +T+I++  +R+G     + +   M + G+ PD
Sbjct: 473 LIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGVAPD 532

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            V  L VL  C + GMV  G+ +F+SM +  G++   +HYSC++DMLGRAG L +AEEL+
Sbjct: 533 GVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAEELM 592

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            + P G       SLL +CR+HG+  IG R+A IL E EP +   Y  +SN Y+++G+++
Sbjct: 593 MRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVGDWD 652

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
              ++R     R + ++IG S ++  +
Sbjct: 653 GVAKVRRKMRDRGVKKEIGFSWVDAGA 679



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 211/454 (46%), Gaps = 14/454 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEM 101
           +++  N  +  + + G L  A+ +FD+MPARD+V++N LI G  +    P + + ++  M
Sbjct: 165 DVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRM 224

Query: 102 VSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +  G ++    +  SV+  C   G    G Q+H   + LG    + IG+ LV +Y + G 
Sbjct: 225 LRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGA 284

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD + ER++ +W   +    E     + L ++N M+ +GV PN ++F  ++  
Sbjct: 285 PGSARRLFDAMSERDVVSWTTAISMDGE-----DALTLFNGMRRDGVPPNEVTFVALMSA 339

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                     + +H+  +K   V      +N+L+  Y+    + +A+  FD +P  ++I+
Sbjct: 340 LPADCPARGAQMVHAACLKAA-VSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIA 398

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF--ASRTGNVYFGKQIHGY 338
           WN+++S YA      DALELF  M  C   P+  +F   L+   A  T ++ +G+  H  
Sbjct: 399 WNAVISGYAQNGRCNDALELFSSMARCLT-PNETTFASVLSAVTAVETVSMAYGQMYHSR 457

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
              +GF   S +V  AL DMY K   +E S   F     RSL    +++++    G+   
Sbjct: 458 ALSMGFGD-SEYVAGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGA 516

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            + +FG M   G+  D V L   L A       + G   +    A   G E        +
Sbjct: 517 VMSLFGDMARSGVAPDGVVLLAVLTACRYGGMVDAGR-DIFDSMAADRGVELWPEHYSCV 575

Query: 459 MDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMN 491
           +D   R G +  + ++  ++P+ P+V    S++ 
Sbjct: 576 VDMLGRAGRLAEAEELMMRMPAGPSVSALQSLLG 609



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 86/375 (22%), Positives = 163/375 (43%), Gaps = 20/375 (5%)

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           N ++F   VR      L      LH+  +  G +     V N+L   Y+  GS   A   
Sbjct: 35  NPIAFSAAVRASDPASL----PALHAVAVTTG-LHGFAAVTNSLAARYAKTGSFPSAVGV 89

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           F      DV S+N+I+S + D     D      R      RP   +    L+ A+  G  
Sbjct: 90  FAAARARDVSSYNTILSAFPDPAEALDFASWMLRSGAV--RPDAVTCTVALSLAAGRGEG 147

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
           +  +Q+H    + G     V V +AL   Y +   +  + +VF+  P R L   N+L+  
Sbjct: 148 FLVRQLHALAWRSGL-AADVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICG 206

Query: 390 LLHSGNI-KDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           L   G+   + + +F  M+ +G +  D +++ + + A        LG  R +H  A+K G
Sbjct: 207 LAQDGDCPAEVIGVFLRMLRDGDVQPDRISVCSVIPACGGEGKLELG--RQVHGFAVKLG 264

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            E  +++   L+  Y +CG    + ++F+ +   +VV +T+ ++       G +AL +  
Sbjct: 265 VEGYVSIGNVLVAMYYKCGAPGSARRLFDAMSERDVVSWTTAISMD-----GEDALTLFN 319

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSCMIDMLGR 566
            M + G+ P++VTF+ +++        +  Q+V  + +K+   +  +    + +I M  +
Sbjct: 320 GMRRDGVPPNEVTFVALMSALPADCPARGAQMVHAACLKAA--VSGEAAASNSLITMYAK 377

Query: 567 AGILDKAEELLQQTP 581
           A  +D A  +    P
Sbjct: 378 ARRMDDARMVFDLMP 392


>gi|296081839|emb|CBI20844.3| unnamed protein product [Vitis vinifera]
          Length = 700

 Score =  305 bits (780), Expect = 6e-80,   Method: Compositional matrix adjust.
 Identities = 184/623 (29%), Positives = 332/623 (53%), Gaps = 8/623 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++ S+  I  + K   +  A+ LFD+MP RD V++N +I+G  +    ++A  L+  M+
Sbjct: 75  QLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMI 134

Query: 103 SH----GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +      +  S  T ++VL  C   G    G  +H   + +GF  +L++    V +Y + 
Sbjct: 135 NSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFDSDLFVSGSTVYMYCKC 194

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A   FD++  +++  WN M+  + +    +E + ++ +M+ EG +PN  +FC ++
Sbjct: 195 GILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVL 254

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           +  +       G+  H+ V+KLG   +++FVA ALVD YS    + + +++F  +   ++
Sbjct: 255 KASTAMSDSAVGRCFHAKVLKLG-CSMDVFVATALVDMYSKFYDIEDVERAFGEMSKRNL 313

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +S+N++++ Y+      +AL ++ ++Q     P   +FV   +  S +  V  G Q+H +
Sbjct: 314 VSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVH 373

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K G D   V V +++ + Y KC   +S++  FES    +  C   +++    +G  + 
Sbjct: 374 SVKFGLD-SDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEK 432

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+  F  M       DE + S+ +KA+S  A+   G  R LH   +KSG +  I V  ++
Sbjct: 433 ALMQFCKMRKFIDKTDEFSSSSVIKAVSSWAAVEQG--RHLHAHVMKSGLDCTIYVGSAV 490

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D YS+CG +E + +VF  +P  NVV + S++ GY++NG  +EAL + + M   G++P  
Sbjct: 491 IDMYSKCGMVEDAQKVFSVMPEKNVVSWNSMITGYAQNGFCKEALLLFQEMTSSGILPTA 550

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ +L  C+H+G+V+EG+  +N M   YGI    +H +CM+D+LGRAG L++AE  L 
Sbjct: 551 VTFVGILFACSHAGLVEEGRNFYNLMVHNYGIPPSMEHCTCMVDLLGRAGYLEEAEAFLL 610

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
            +    +  +W SLL +C VH N  +G R A   + LEP   + Y+ +SN Y+    +  
Sbjct: 611 SSSFSKEPGIWGSLLSACGVHKNSDVGSRAAQHCLFLEPHYSSSYTALSNIYASKELWSE 670

Query: 639 SMQIRETALARKLTRDIGHSLIE 661
             +IR+      + ++ G S IE
Sbjct: 671 VSRIRDLMKDMGVEKEPGCSWIE 693



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 142/508 (27%), Positives = 264/508 (51%), Gaps = 16/508 (3%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           QAL  + +M+  GI+ +A T+S+ +S C+ +   +    +HC +L  GF   L++ S L+
Sbjct: 24  QALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATSLHCLILKKGFSNQLFVSSGLI 83

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV----LRMYNKMKAEGVE 208
            +Y +      A  LFD++PER+  +WN M+  + +    +E       M N  +   + 
Sbjct: 84  SMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRGLNEEACGLFCSMINSCENWKLL 143

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            +  +   +++ C        GK +H + +K+G+ D ++FV+ + V  Y  CG L  A  
Sbjct: 144 VSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGF-DSDLFVSGSTVYMYCKCGILDMAGL 202

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
           +FD I   D+++WN++++ YA      +A+ELF++M+L   +P+  +F   L  ++   +
Sbjct: 203 AFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMELEGFKPNDTTFCCVLKASTAMSD 262

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
              G+  H  V KLG     V V +AL DMY K   IE     F     R+L   N+L+T
Sbjct: 263 SAVGRCFHAKVLKLGCSM-DVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALIT 321

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
                G  ++A+ ++  +  EG+  D  T      + SVS++   G+   +H  ++K G 
Sbjct: 322 GYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSCSVSSTVAEGA--QVHVHSVKFGL 379

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           +S+++V  S+++ YS+CG  + + + FE I  PN VC+  I++G+++NG G +AL  ++ 
Sbjct: 380 DSDVSVGNSIVNFYSKCGFTDSALEAFESINRPNSVCWAGIISGFAQNGEGEKAL--MQF 437

Query: 509 MIQRGLI--PDKVTFLCVLAGCNHSGMVKEGQ-LVFNSMKSVYGIDADRQHYSCMIDMLG 565
              R  I   D+ +   V+   +    V++G+ L  + MKS  G+D      S +IDM  
Sbjct: 438 CKMRKFIDKTDEFSSSSVIKAVSSWAAVEQGRHLHAHVMKS--GLDCTIYVGSAVIDMYS 495

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLL 593
           + G+++ A+++    P   + + W+S++
Sbjct: 496 KCGMVEDAQKVFSVMP-EKNVVSWNSMI 522



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 110/411 (26%), Positives = 197/411 (47%), Gaps = 11/411 (2%)

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           E N+  W   +         D+ L  + +M   G+EPN +++   +  C+          
Sbjct: 3   ETNVVRWTSKITDNARRGLVDQALSCFLQMLRAGIEPNAITYSATISACAQSTRPSLATS 62

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           LH  ++K G+ +  +FV++ L+  YS    + EA+  FD +P  D +SWNS+++ Y+   
Sbjct: 63  LHCLILKKGFSN-QLFVSSGLISMYSKHDRIKEARFLFDDMPERDDVSWNSMIAGYSQRG 121

Query: 293 LIFDALELFFRM-QLCRKRPSIRS---FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           L  +A  LF  M   C     + S       L      G    GK +HGY  K+GFD   
Sbjct: 122 LNEEACGLFCSMINSCENWKLLVSDFTLATVLKACGGLGCSRIGKCVHGYAVKIGFD-SD 180

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           + V  +   MY KC +++ +   F+    + +   N+++T    +   ++A+E+F  M  
Sbjct: 181 LFVSGSTVYMYCKCGILDMAGLAFDQIENKDIVAWNTMITGYAQNCYEEEAIELFYQMEL 240

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           EG   ++ T    LKA +  + + +G C   H   +K G   ++ V+ +L+D YS+   I
Sbjct: 241 EGFKPNDTTFCCVLKASTAMSDSAVGRC--FHAKVLKLGCSMDVFVATALVDMYSKFYDI 298

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           E   + F ++   N+V F +++ GYS  G   EAL +   +   G+ PD  TF+ + + C
Sbjct: 299 EDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQLQSEGMEPDSFTFVGLFSSC 358

Query: 529 NHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           + S  V EG Q+  +S+K  +G+D+D    + +++   + G  D A E  +
Sbjct: 359 SVSSTVAEGAQVHVHSVK--FGLDSDVSVGNSIVNFYSKCGFTDSALEAFE 407



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/346 (26%), Positives = 173/346 (50%), Gaps = 16/346 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++++ +   +D + K   +   ++ F EM  R++V++N LI+G       ++AL +Y ++
Sbjct: 280 MDVFVATALVDMYSKFYDIEDVERAFGEMSKRNLVSFNALITGYSLMGKYEEALRVYSQL 339

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            S G++  + TF  + S CS +    EG Q+H   +  G   ++ +G+ +V+ Y + G +
Sbjct: 340 QSEGMEPDSFTFVGLFSSCSVSSTVAEGAQVHVHSVKFGLDSDVSVGNSIVNFYSKCGFT 399

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             AL+ F+ +   N   W  ++  F +    ++ L  + KM+    + +  S   +++  
Sbjct: 400 DSALEAFESINRPNSVCWAGIISGFAQNGEGEKALMQFCKMRKFIDKTDEFSSSSVIKAV 459

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S    +++G+ LH+HV+K G +D  I+V +A++D YS CG + +A+K F  +P  +V+SW
Sbjct: 460 SSWAAVEQGRHLHAHVMKSG-LDCTIYVGSAVIDMYSKCGMVEDAQKVFSVMPEKNVVSW 518

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ-----IH 336
           NS+++ YA      +AL LF  M      P+  +FV  L   S  G V  G+      +H
Sbjct: 519 NSMITGYAQNGFCKEALLLFQEMTSSGILPTAVTFVGILFACSHAGLVEEGRNFYNLMVH 578

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV-----FESAPG 377
            Y      +H +  V     D+ G+   +E + A      F   PG
Sbjct: 579 NYGIPPSMEHCTCMV-----DLLGRAGYLEEAEAFLLSSSFSKEPG 619


>gi|449502685|ref|XP_004161713.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At3g47840-like [Cucumis
           sativus]
          Length = 712

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 182/625 (29%), Positives = 330/625 (52%), Gaps = 7/625 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++++  +N  +   VK+ HL  A+ LFD++P RD V++  +ISG        +AL L+ +
Sbjct: 46  KVDLAEANNQLKILVKTNHLKDARDLFDQLPQRDEVSWTNIISGYVNSSDSSEALRLFSK 105

Query: 101 M-VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           M +   ++      S  L  C     Y  G  +H   +  G   ++++GS L+D+YM++G
Sbjct: 106 MRLQSELRIDPFLLSLGLKTCGLGLNYLYGTNLHGFSVKXGLVNSVFVGSALLDMYMKIG 165

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
              R+  +FDE+P RN  TW  ++         +  L  ++ M    VE +  ++   ++
Sbjct: 166 EIGRSCKVFDEMPTRNAVTWTAVITGLVRAGYSEAGLAYFSGMGRSKVEYDSYAYAIALK 225

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +    L+ G+ +H+  +K G+ D N FVAN+L   Y+ CG L     +F  +   DV+
Sbjct: 226 ASADSGALNHGRSIHTQTLKKGF-DENSFVANSLTTMYNKCGKLDYGLHTFRKMRTLDVV 284

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +IV+ Y         L+ F RM+     P+  +F   ++  +    + +G+Q+H +V
Sbjct: 285 SWTTIVTAYIQMGKEDCGLQAFKRMRASNVIPNEYTFSAVISCCANFARLKWGEQLHAHV 344

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             +GF + ++ V +++  +Y KC  + S   VF S   R +   ++++ +    G  ++A
Sbjct: 345 LCVGFVN-ALSVANSIMTLYSKCGELASVSKVFCSMKFRDIITWSTIIAAYSQVGYGEEA 403

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            E    M  EG   +E  L++ L   SV  S A L   + LH   +  G E    V  +L
Sbjct: 404 FEYLSRMRSEGPKPNEFALASVL---SVCGSMAILEQGKQLHAHVLSVGLEQTSMVCSAL 460

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG I  + ++F      +++ +T++++GY+ +G  +EA+++ E + + GL PD 
Sbjct: 461 IIMYAKCGSIAEASKIFMDSWKDDIISWTAMISGYAEHGHSQEAIELFENIQKVGLRPDS 520

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ VL  C+H+GMV  G   FNSM   Y I   ++HY CMID+L RAG L  AE L++
Sbjct: 521 VTFIGVLTACSHAGMVDLGFYYFNSMSKDYHITPSKEHYGCMIDLLCRAGRLHDAETLIR 580

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   D ++WS+LLR+CR+HG+   G+R A  +++L+P     +  ++N ++  G+++ 
Sbjct: 581 SMPIQWDDVVWSTLLRACRIHGDVDCGQRAAAEVLKLDPNCAGTHITLANIFAAKGKWKE 640

Query: 639 SMQIRETALARKLTRDIGHSLIEVN 663
           +  IR    ++ + ++ G S ++V 
Sbjct: 641 AANIRMLMKSKGVVKEPGWSSVKVK 665


>gi|168066429|ref|XP_001785140.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162663262|gb|EDQ50036.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 922

 Score =  305 bits (780), Expect = 7e-80,   Method: Compositional matrix adjust.
 Identities = 176/653 (26%), Positives = 337/653 (51%), Gaps = 12/653 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           M    L P   +  ++   C + + L     + S+  +   + ++  S   I+ + K G 
Sbjct: 143 MQREGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGS 202

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+K+F+EM  R++V++  +ISG  +    K+A  L+ +++  G + +  +F+S+L  
Sbjct: 203 LELARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGA 262

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+N     +G+++H  +   G    + +G+ L+ +Y R G    A  +FD L   N  +W
Sbjct: 263 CTNPNDLEQGLKLHAYIKQAGLEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSW 322

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + E    +E  R++  M+ +G +P+  ++  ++  C+    L+ GK+LHS +++
Sbjct: 323 NAMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVR 381

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
             W + ++ VA AL+  Y+ CGSL EA+K F+ +P  + +SWN+ ++    +    +A +
Sbjct: 382 TAW-EADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQ 440

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F +M+     P   +F+  LN  +   +   G+ IHG + + G    ++ V +AL  MY
Sbjct: 441 VFKQMRRDDVIPDHVTFITLLNSCTSPEDFERGRYIHGKIDQWGMLSNNL-VANALISMY 499

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           G+C  +  +  VF     R L   N+++ + +  G    A ++F     EG   D+ T  
Sbjct: 500 GRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFI 559

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L+A  ++   +L + R +H    K+G E +I +  +L+  YS+CG +  ++ VF+ + 
Sbjct: 560 NVLRA--IANLEDLDAGRKIHGLVEKAGLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQ 617

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +VVC+ +++  Y+ +  G++AL + + M   G+ PD  T+  VL  C   G ++ G+ 
Sbjct: 618 EKDVVCWNAMLAAYNHSDHGQDALKLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGKK 677

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
               +K    ++ D +HY+CM+  LGRA +L +AEE +++     D +MW SLL +CR+H
Sbjct: 678 FHTQLKEA-AMETDTRHYACMVAALGRASLLKEAEEFIEEISSESDALMWESLLVACRIH 736

Query: 600 GNEIIGRRVANILMELEPVDF-AVYSQVSNFYSEIGEFE----VSMQIRETAL 647
            N  +       L++++     AV  Q+ N Y+  G +E    +   +RE  L
Sbjct: 737 HNVGLAETAVEHLLDVKAQSSPAVCEQLMNIYAAAGRWEDVSVIKATMREAGL 789



 Score =  231 bits (590), Expect = 8e-58,   Method: Compositional matrix adjust.
 Identities = 153/611 (25%), Positives = 300/611 (49%), Gaps = 14/611 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +IY +N  I  + K G +  A  +F  M  +D+V++N +ISG       ++A+ L+ +M 
Sbjct: 85  DIYLNNMLISMYSKCGSIEDANNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQ 144

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+K + ++F S+LS C        G QIH  +   G+  ++ + + L+++Y + G   
Sbjct: 145 REGLKPNQNSFISILSACQTPIVLEFGEQIHSHITKAGYESDVNVSTALINMYCKCGSLE 204

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F+E+ ERN+ +W  M+  + +     E   ++ K+   G +PN +SF  ++  C+
Sbjct: 205 LARKVFNEMRERNVVSWTAMISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACT 264

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L++G +LH+++ + G ++  + V NAL+  Y+ CGSL  A++ FD +   + +SWN
Sbjct: 265 NPNDLEQGLKLHAYIKQAG-LEQEVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWN 323

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y +   + +A  LF  MQ    +P   ++   L   +   ++  GK++H  + + 
Sbjct: 324 AMIAGYGE-GFMEEAFRLFRDMQQKGFQPDRFTYASLLAICADRADLNRGKELHSQIVRT 382

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            ++   V V +AL  MY KC  +E +  VF   P ++    N+ +      G+ K+A ++
Sbjct: 383 AWE-ADVTVATALISMYAKCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQV 441

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  + +  D VT  T L   S ++  +    R +H    + G  SN  V+ +L+  Y
Sbjct: 442 FKQMRRDDVIPDHVTFITLLN--SCTSPEDFERGRYIHGKIDQWGMLSNNLVANALISMY 499

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            RCG +  + +VF +I   ++  + +++  Y ++G    A D+       G   DK TF+
Sbjct: 500 GRCGKLADAREVFYRIRRRDLGSWNAMIAAYVQHGANGSAFDLFIKYKSEGGKGDKYTFI 559

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL    +   +  G+ +   ++   G++ D +  + +I M  + G L  A  + +    
Sbjct: 560 NVLRAIANLEDLDAGRKIHGLVEKA-GLEKDIRILTTLIKMYSKCGSLRDAYSVFKNVQ- 617

Query: 583 GGDCMMWSSLLRSCR--VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE--- 637
             D + W+++L +     HG + + +    + +E    D A Y+ V N  + +G  E   
Sbjct: 618 EKDVVCWNAMLAAYNHSDHGQDAL-KLFQQMRLEGVNPDSATYTSVLNACARLGAIEHGK 676

Query: 638 -VSMQIRETAL 647
               Q++E A+
Sbjct: 677 KFHTQLKEAAM 687



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 260/497 (52%), Gaps = 9/497 (1%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++ + + ++  L  C  A    EG ++H  + S  F  ++Y+ + L+ +Y + G    A
Sbjct: 46  GVQANLNFYARRLQECVQAKSLAEGKKVHDHMRSAQFEPDIYLNNMLISMYSKCGSIEDA 105

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            ++F  + ++++ +WN M+  +    R  E + ++ +M+ EG++PN  SF  ++  C   
Sbjct: 106 NNVFQSMEDKDVVSWNAMISGYALHGRGQEAVDLFYQMQREGLKPNQNSFISILSACQTP 165

Query: 225 MLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
           ++L+ G+Q+HSH+ K G+  DVN  V+ AL++ Y  CGSL  A+K F+ +   +V+SW +
Sbjct: 166 IVLEFGEQIHSHITKAGYESDVN--VSTALINMYCKCGSLELARKVFNEMRERNVVSWTA 223

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S Y  +    +A  LF ++     +P+  SF   L   +   ++  G ++H Y+ + G
Sbjct: 224 MISGYVQHGDSKEAFVLFQKLIRSGTQPNKVSFASILGACTNPNDLEQGLKLHAYIKQAG 283

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            +   V V +AL  MY +C  + ++  VF++    +    N+++      G +++A  +F
Sbjct: 284 LEQ-EVLVGNALISMYARCGSLANARQVFDNLRSPNRVSWNAMIAG-YGEGFMEEAFRLF 341

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M  +G   D  T ++ L   +  A  N G  + LH   +++ +E+++ V+ +L+  Y+
Sbjct: 342 RDMQQKGFQPDRFTYASLLAICADRADLNRG--KELHSQIVRTAWEADVTVATALISMYA 399

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG +E + +VF ++P  N V + + +    R+G  +EA  + + M +  +IPD VTF+ 
Sbjct: 400 KCGSLEEARKVFNQMPEKNAVSWNAFIACCCRHGSEKEAFQVFKQMRRDDVIPDHVTFIT 459

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L  C      + G+ +   +   +G+ ++    + +I M GR G L  A E+  +    
Sbjct: 460 LLNSCTSPEDFERGRYIHGKIDQ-WGMLSNNLVANALISMYGRCGKLADAREVFYRIR-R 517

Query: 584 GDCMMWSSLLRSCRVHG 600
            D   W++++ +   HG
Sbjct: 518 RDLGSWNAMIAAYVQHG 534


>gi|147801171|emb|CAN62238.1| hypothetical protein VITISV_014689 [Vitis vinifera]
          Length = 957

 Score =  305 bits (780), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 182/625 (29%), Positives = 333/625 (53%), Gaps = 7/625 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +N  +  + K   LN A++LFD MP + D+V++N +IS         +AL L+ EM 
Sbjct: 215 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQ 274

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +  +  TF + L  C ++ F  +G+ IH  VL   + +N+++ + L+ +Y R G   
Sbjct: 275 KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMG 334

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A ++F  + + +  +WN ML  F +     E L+ Y++M+  G +P+ ++   ++   +
Sbjct: 335 EAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 394

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  G Q+H++ +K G +D ++ V N+LVD Y+   S+      FD +P  DV+SW 
Sbjct: 395 RSGNTLHGMQIHAYAMKNG-LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWT 453

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++ +A       ALELF  +QL      +      L   S    +   K+IH Y+ + 
Sbjct: 454 TIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK 513

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     + +Q+ + D+YG+C  ++ +  +FE    + +    S+++  +H+G   +A+E+
Sbjct: 514 GLS--DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALEL 571

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M + G+  D ++L + L A +  ++   G  + +H   I+ GF    +++ +L+D Y
Sbjct: 572 FHLMKETGVEPDSISLVSILSAAASLSALKKG--KEIHGFLIRKGFVLEGSLASTLVDMY 629

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           +RCG +E S  VF  I + ++V +TS++N Y  +G GR A+D+   M    + PD + F+
Sbjct: 630 ARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFV 689

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  C+HSG++ EG+    SMK  Y ++   +HY+C++D+LGRA  L++A + ++    
Sbjct: 690 AVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYACLVDLLGRANHLEEAYQFVKGMEV 749

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                +W +LL +C++H N+ +G   A  L+E++P +   Y  VSN YS    ++    +
Sbjct: 750 EPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYSAERRWKDVEXV 809

Query: 643 RETALARKLTRDIGHSLIEV-NSCH 666
           R    A  L ++ G S IEV N  H
Sbjct: 810 RMRMKASGLKKNPGCSWIEVGNKVH 834



 Score =  247 bits (631), Expect = 1e-62,   Method: Compositional matrix adjust.
 Identities = 157/580 (27%), Positives = 297/580 (51%), Gaps = 11/580 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ S R +  + K G L  A+KLFD MP + + T+N +I        P  +L LY EM 
Sbjct: 113 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 172

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI   A TF  +L  C        G ++H   +  G+   +++ + +V +Y +     
Sbjct: 173 VSGIPLDACTFPCILKACGLLKDRRYGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLN 232

Query: 163 RALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A  LFD +PE+ ++ +WN M+ A+    +  E LR++ +M+   + PN  +F   ++ C
Sbjct: 233 GARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 292

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                + +G  +H+ V+K  +  +N+FVANAL+  Y+  G + EA   F  +   D ISW
Sbjct: 293 EDSSFIKQGMFIHATVLKSSYY-INVFVANALIAMYARFGKMGEAANIFYNMDDWDTISW 351

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NS++S +    L  +AL+ +  M+   ++P + + +  +  ++R+GN   G QIH Y  K
Sbjct: 352 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMK 411

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G D   + V ++L DMY K   ++    +F+  P + +    +++     +G+   A+E
Sbjct: 412 NGLD-SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALE 470

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  +  EGI LD + +S+ L  L+ S    + S + +H   I+ G  S++ +   ++D 
Sbjct: 471 LFREVQLEGIDLDVMMISSIL--LACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDV 527

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y  CG+++ + ++FE I   +VV +TS+++ Y  NG+  EAL++  +M + G+ PD ++ 
Sbjct: 528 YGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISL 587

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L+       +K+G+ +   +    G   +    S ++DM  R G L+K+  +     
Sbjct: 588 VSILSAAASLSALKKGKEIHGFLIR-KGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIR 646

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621
              D ++W+S++ +  +HG    GR   ++   +E    A
Sbjct: 647 -NKDLVLWTSMINAYGMHG---CGRAAIDLFRRMEDESIA 682



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 255/497 (51%), Gaps = 24/497 (4%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSPLVDLYMRMGPSVRALDLFDE 170
            +SSVL +C +    +EG Q+H  +++     N +++ + LV +Y + G  V A  LFD 
Sbjct: 80  AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 139

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE- 229
           +P + + TWN M+ A+     P   L +Y +M+  G+  +  +F  +++ C  G+L D  
Sbjct: 140 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC--GLLKDRR 197

Query: 230 -GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSI 287
            G ++H   IK G+V + +FVAN++V  Y+ C  L  A++ FD +P  +DV+SWNS++S 
Sbjct: 198 YGAEVHGLAIKEGYVSI-VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 256

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+      +AL LF  MQ     P+  +FV  L     +  +  G  IH  V K  + + 
Sbjct: 257 YSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSY-YI 315

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V V +AL  MY +   +  +  +F +         NS+++  + +G   +A++ +  M 
Sbjct: 316 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 375

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           D G   D V + + + A + S +   G    +H  A+K+G +S++ V  SL+D Y++   
Sbjct: 376 DAGQKPDLVAVISIIAASARSGNTLHG--MQIHAYAMKNGLDSDLQVGNSLVDMYAKFCS 433

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           ++    +F+K+P  +VV +T+I+ G+++NG    AL++   +   G+  D +    +L  
Sbjct: 434 MKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLA 493

Query: 528 CNHSGMVKEGQLVFNSMKSVYGID-----ADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
           C+       G  + +S+K ++        +D    + ++D+ G  G +D A  + +    
Sbjct: 494 CS-------GLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIE- 545

Query: 583 GGDCMMWSSLLRSCRVH 599
             D + W+S++ SC VH
Sbjct: 546 FKDVVSWTSMI-SCYVH 561



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 105/458 (22%), Positives = 215/458 (46%), Gaps = 20/458 (4%)

Query: 147 IGSPLVDLYMRMGPSVRALDL-----FDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201
           + +P+   Y+   P ++ +         + P + + T +L  R  C+    +E  +    
Sbjct: 8   MAAPIPSFYLNCHPVLKKIHQNPPLKISKFPLKPVETPSL--REICKRGSVNEAFQSLTD 65

Query: 202 MKAEGVEPNGLS----FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           + A    P+  S    +  ++  C     L EG+Q+H+H+I    +  ++F++  LV  Y
Sbjct: 66  LFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMY 124

Query: 258 SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
             CG L++A+K FD +P   + +WN+++  Y        +LEL+  M++        +F 
Sbjct: 125 GKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFP 184

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             L       +  +G ++HG   K G+    V V +++  MY KCN +  +  +F+  P 
Sbjct: 185 CILKACGLLKDRRYGAEVHGLAIKEGYV-SIVFVANSIVGMYTKCNDLNGARQLFDRMPE 243

Query: 378 RS-LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
           +  +   NS++++   +G   +A+ +FG M    +  +  T    L+A   S+    G  
Sbjct: 244 KEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQG-- 301

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
             +H   +KS +  N+ V+ +L+  Y+R G +  +  +F  +   + + + S+++G+ +N
Sbjct: 302 MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQN 361

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQ 555
           G+  EAL     M   G  PD V  + ++A    SG    G Q+   +MK+  G+D+D Q
Sbjct: 362 GLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLHGMQIHAYAMKN--GLDSDLQ 419

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             + ++DM  +   +   + +  + P   D + W++++
Sbjct: 420 VGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTII 456


>gi|449443954|ref|XP_004139740.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g09040, mitochondrial-like [Cucumis sativus]
          Length = 1441

 Score =  305 bits (780), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 179/621 (28%), Positives = 336/621 (54%), Gaps = 6/621 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  +  ++ + K   +++AK++F+ +  R++V +N ++ G  +    ++ +  +  M 
Sbjct: 343 NVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMK 402

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            HG +    TF+S+ S C++  +   G Q+H  ++   F  NL++ + LVD+Y + G   
Sbjct: 403 RHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFASNLFVANALVDMYAKSGALK 462

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F+ +   +  +WN ++  + +    DE   M+ +M + GV P+ +S   +V  C+
Sbjct: 463 EARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACA 522

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G+Q H  ++K+G +D +    ++L+D Y  CG ++ A+  F  +P  +V+S N
Sbjct: 523 NVQELKRGQQCHCLLVKVG-LDTSTCAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVN 581

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y    L  +A+ LF  +Q+   +P+  +F   L+       +  G+QIHG V K 
Sbjct: 582 ALIAGYTMGHLE-EAIHLFQEIQMVGLKPTEVTFAGLLDGCDGAFMLNLGRQIHGQVMKW 640

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           GF   S  V  +L  +Y        S  +F E    + L    +L++      + + A++
Sbjct: 641 GFLSSSEMVCVSLLCLYMNSQRFVDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQ 700

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +  M  + I  D+   ++ L+A   +  ++L + + +H     +GF  +     SL+D 
Sbjct: 701 FYQHMRSDNILPDQAAFASVLRA--CAGMSSLQNGQEIHSLIFHTGFNMDEVTCSSLIDM 758

Query: 462 YSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           Y++CG ++ S QVF ++P   NV+ + S++ G ++NG   EAL++ + M Q+ +IPD+VT
Sbjct: 759 YAKCGDVKGSLQVFREMPRRNNVISWNSMIVGLAKNGYAEEALEIFKQMEQQSIIPDEVT 818

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL+ C+H+G V EG+ VF+ M + Y +     H  CM+D+LGR G L++AEE + + 
Sbjct: 819 FLGVLSACSHAGRVSEGRKVFDLMVNNYKLLPRVDHLGCMVDILGRWGFLNEAEEFINKL 878

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
               D M+WS+LL +CR HG+E+ G+R A+ LMEL+P   + Y  +S+ Y+E   +  ++
Sbjct: 879 GCKADPMLWSTLLGACRKHGDEVRGKRAADKLMELKPQSSSSYVLLSSIYAESENWSGAV 938

Query: 641 QIRETALARKLTRDIGHSLIE 661
            +R     + + +  G+S IE
Sbjct: 939 SLRREMKLKGVKKLPGYSWIE 959



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 160/550 (29%), Positives = 282/550 (51%), Gaps = 16/550 (2%)

Query: 50  TIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            ++ +V  G L  A+KLF ++P  ++V +N++ISG  K    ++A+  + E+   G+K +
Sbjct: 249 VVNAYVALGRLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKAT 308

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            S+  SVLS  ++      G  +H +    G   N+Y+GS LV++Y +      A  +F+
Sbjct: 309 RSSLGSVLSAIASLSMLNYGSMVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFN 368

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            L ERN+  WN ML  F +     EV+  ++ MK  G +P+  +F  +   C+    L+ 
Sbjct: 369 SLGERNIVLWNAMLGGFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNF 428

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G QLH+ +IK  +   N+FVANALVD Y+  G+L EA+K F+ + + D +SWN+I+  Y 
Sbjct: 429 GGQLHTVMIKNKFAS-NLFVANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYV 487

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
             +   +A  +F RM      P   S    ++  +    +  G+Q H  + K+G D  S 
Sbjct: 488 QEEYNDEAFFMFRRMVSNGVLPDEVSLASIVSACANVQELKRGQQCHCLLVKVGLDT-ST 546

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
              S+L DMY KC V+ ++  VF S P R++   N+L+      G++++A+ +F  +   
Sbjct: 547 CAGSSLIDMYVKCGVVLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMV 605

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC-SLMDAYSRCGHI 468
           G+   EVT +  L     +   NLG  R +H   +K GF S+  + C SL+  Y      
Sbjct: 606 GLKPTEVTFAGLLDGCDGAFMLNLG--RQIHGQVMKWGFLSSSEMVCVSLLCLYMNSQRF 663

Query: 469 ELSHQVFEKIPSPN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
             S  +F ++  P  +V +T++++GY++     +AL   + M    ++PD+  F  VL  
Sbjct: 664 VDSETLFSELQYPKGLVVWTALISGYAQQNHHEKALQFYQHMRSDNILPDQAAFASVLRA 723

Query: 528 CNHSGMVKEGQ----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           C     ++ GQ    L+F++     G + D    S +IDM  + G +  + ++ ++ P  
Sbjct: 724 CAGMSSLQNGQEIHSLIFHT-----GFNMDEVTCSSLIDMYAKCGDVKGSLQVFREMPRR 778

Query: 584 GDCMMWSSLL 593
            + + W+S++
Sbjct: 779 NNVISWNSMI 788



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 133/537 (24%), Positives = 248/537 (46%), Gaps = 46/537 (8%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSH 104
           N  +D +VK G+++ A+K F  +  +D+  +N ++S     G F    Q+      M +H
Sbjct: 80  NVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGLFATVVQSFVC---MWNH 136

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            ++ +  TF+ VLS CS       G Q+HC V   GFG   +    L+D+Y +      A
Sbjct: 137 EVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGFRSFCQGGLIDMYAKCRYLRDA 196

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD     +  +W  ++  +     P E ++++++M+  G  P+ ++           
Sbjct: 197 RLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQITLV--------- 247

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
                                       +V+ Y A G L +A+K F  IP  +V++WN +
Sbjct: 248 ---------------------------TVVNAYVALGRLADARKLFTQIPNPNVVAWNVM 280

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S +A      +A+  F  ++    + +  S    L+  +    + +G  +H   TK G 
Sbjct: 281 ISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYGSMVHAQATKEGL 340

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D  +V+V SAL +MY KC+ ++++  VF S   R++   N+++     +G  ++ +E F 
Sbjct: 341 DD-NVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQNGLAQEVMEFFS 399

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M   G   DE T ++   A +     N G    LH   IK+ F SN+ V+ +L+D Y++
Sbjct: 400 CMKRHGPQPDEFTFTSIFSACASLHYLNFGG--QLHTVMIKNKFASNLFVANALVDMYAK 457

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G ++ + + FE +   + V + +I+ GY +     EA  M   M+  G++PD+V+   +
Sbjct: 458 SGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNGVLPDEVSLASI 517

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           ++ C +   +K GQ     +  V G+D      S +IDM  + G++  A ++    P
Sbjct: 518 VSACANVQELKRGQQCHCLLVKV-GLDTSTCAGSSLIDMYVKCGVVLAARDVFYSMP 573



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 227/493 (46%), Gaps = 46/493 (9%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID + K  +L  A+ +FD     D V++  LI+G  +   P +A+ ++D M   G     
Sbjct: 184 IDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAPDQ 243

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T  +V                                   V+ Y+ +G    A  LF +
Sbjct: 244 ITLVTV-----------------------------------VNAYVALGRLADARKLFTQ 268

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P  N+  WN+M+    +    +E +  + ++K  G++    S   ++   +   +L+ G
Sbjct: 269 IPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSMLNYG 328

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +H+   K G +D N++V +ALV+ Y+ C  +  AK+ F+ +   +++ WN+++  +A 
Sbjct: 329 SMVHAQATKEG-LDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLGGFAQ 387

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
             L  + +E F  M+    +P   +F    +  +    + FG Q+H  + K  F   ++ 
Sbjct: 388 NGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKF-ASNLF 446

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL DMY K   ++ +   FE          N+++   +      +A  MF  MV  G
Sbjct: 447 VANALVDMYAKSGALKEARKQFELMKIHDNVSWNAIIVGYVQEEYNDEAFFMFRRMVSNG 506

Query: 411 IGLDEVTLSTTLKALSVSASAN---LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           +  DEV+L++      VSA AN   L   +  HC  +K G +++     SL+D Y +CG 
Sbjct: 507 VLPDEVSLASI-----VSACANVQELKRGQQCHCLLVKVGLDTSTCAGSSLIDMYVKCGV 561

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +  +  VF  +PS NVV   +++ GY+  G   EA+ + + +   GL P +VTF  +L G
Sbjct: 562 VLAARDVFYSMPSRNVVSVNALIAGYTM-GHLEEAIHLFQEIQMVGLKPTEVTFAGLLDG 620

Query: 528 CNHSGMVKEGQLV 540
           C+ + M+  G+ +
Sbjct: 621 CDGAFMLNLGRQI 633



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 101/448 (22%), Positives = 203/448 (45%), Gaps = 42/448 (9%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH + L +G GL   +G+ +VDLY++ G    A   F  L ++++  WN +L  + +   
Sbjct: 63  IHSKSLKIGVGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLSMYLDHGL 122

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
              V++ +  M    V PN  +F  ++  CS    ++ G+Q+H  V K G+     F   
Sbjct: 123 FATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGF-GFRSFCQG 181

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
            L+D Y+ C  L +A+  FD     D +SW ++++ Y       +A+++F RMQ     P
Sbjct: 182 GLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRMQRVGHAP 241

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              + V  +N     G +   +++                                    
Sbjct: 242 DQITLVTVVNAYVALGRLADARKL------------------------------------ 265

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F   P  ++   N +++     G  ++A+  F  +   G+     +L + L A++  +  
Sbjct: 266 FTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLSAIASLSML 325

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           N GS  ++H  A K G + N+ V  +L++ Y++C  ++ + QVF  +   N+V + +++ 
Sbjct: 326 NYGS--MVHAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSLGERNIVLWNAMLG 383

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK-EGQLVFNSMKSVYGI 550
           G+++NG+ +E ++    M + G  PD+ TF  + + C     +   GQL    +K+ +  
Sbjct: 384 GFAQNGLAQEVMEFFSCMKRHGPQPDEFTFTSIFSACASLHYLNFGGQLHTVMIKNKFA- 442

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQ 578
            ++    + ++DM  ++G L +A +  +
Sbjct: 443 -SNLFVANALVDMYAKSGALKEARKQFE 469



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 171/367 (46%), Gaps = 41/367 (11%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L   K +HS  +K+G V +   + N +VD Y  CG++  A+K+F  +   DV +WNS++S
Sbjct: 57  LSTAKVIHSKSLKIG-VGLKGLLGNVIVDLYVKCGNVDFAQKAFSRLEKKDVFAWNSVLS 115

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           +Y D+ L    ++ F  M     RP+  +F   L+  S   +V FG+Q+H  V K GF  
Sbjct: 116 MYLDHGLFATVVQSFVCMWNHEVRPNEFTFAMVLSACSGLQDVNFGRQVHCGVFKTGFGF 175

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            S   Q  L DMY KC  +  +  VF+ A         +L+   +  G   +AV++F  M
Sbjct: 176 RSF-CQGGLIDMYAKCRYLRDARLVFDGALNLDTVSWTALIAGYVRDGFPMEAVKVFDRM 234

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              G   D++TL T                                     +++AY   G
Sbjct: 235 QRVGHAPDQITLVT-------------------------------------VVNAYVALG 257

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +  + ++F +IP+PNVV +  +++G+++ G   EA+     + + GL   + +   VL+
Sbjct: 258 RLADARKLFTQIPNPNVVAWNVMISGHAKRGFAEEAISFFLELKKTGLKATRSSLGSVLS 317

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
                 M+  G +V ++  +  G+D +    S +++M  +   +D A+++     G  + 
Sbjct: 318 AIASLSMLNYGSMV-HAQATKEGLDDNVYVGSALVNMYAKCSKMDAAKQVFNSL-GERNI 375

Query: 587 MMWSSLL 593
           ++W+++L
Sbjct: 376 VLWNAML 382


>gi|242084292|ref|XP_002442571.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
 gi|241943264|gb|EES16409.1| hypothetical protein SORBIDRAFT_08g022230 [Sorghum bicolor]
          Length = 698

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 196/616 (31%), Positives = 322/616 (52%), Gaps = 16/616 (2%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L +A+++FDE+P  D V++N L++        + A  L  +M + G+  S     S L  
Sbjct: 45  LAAARRVFDEIPRPDAVSWNSLLAAHVAAGAHRDAWRLLKDMHARGLTASTFALGSALRS 104

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            + A     G Q+    +  G   N++  S L+D+Y + G    A  +FD +P RN  +W
Sbjct: 105 AAAARRPELGAQLQSFAVKSGLVDNVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSW 164

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM---VRGCSIGMLLDEGKQLHSH 236
           N ++  + E  +P + + ++ +M+   + P+  +F  +   V G S   L+   +QLH  
Sbjct: 165 NALIAGYAESRKPAQAMELFLEMQRVELVPDDATFAALLATVEGPSWYSLM---QQLHGK 221

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           + K G   + + V NA +  YS CG+  ++++ FD I   D+ISWNS++  YA + +  +
Sbjct: 222 IAKYG-SALGLVVLNAAITAYSQCGAFADSRRIFDGIQSRDLISWNSMLGAYAYHGMDDE 280

Query: 297 ALELFFRM-QLCRKRPSIRSFVEFLNFASRTG-NVYFGKQIHGYVTKLGFDHGSVHVQSA 354
           A+  F RM +    +P + SF   ++  S  G +   G+ IH  V K+G + G  HV +A
Sbjct: 281 AMRFFVRMMRESGVQPDMYSFTSVVSVCSEHGCDDRQGRSIHSLVVKIGLE-GVTHVCNA 339

Query: 355 LTDMYGKCN---VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
           +  MY +     ++E +   F+S   +     NS++T   H G   DA+  F FM  E +
Sbjct: 340 MIAMYTRFTENCMMEDAYKCFDSLVFKDAVSWNSMLTGYSHHGLSSDALRFFRFMRAENV 399

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             DE  LS  L++ S  A   LG  R +H   I+SGF SN  VS SL+  YS+CG +  +
Sbjct: 400 STDEFALSAALRSCSDLAVLRLG--RQVHSLVIQSGFSSNDFVSSSLIFMYSKCGMVGDA 457

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            + FE+    + V + S+M GY+++G  +   D+   M+   +  D VTF+ +L   +H 
Sbjct: 458 RKSFEEADKGSSVPWNSMMFGYAQHGQAQTVTDLFSEMLDHKVPLDHVTFVALLTAYSHG 517

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V EG  + NSM++ Y I    +HY+C +D+ GRAG LDKA+EL++  P   D M+W +
Sbjct: 518 GLVDEGSEILNSMETRYKIPLRMEHYACGVDLYGRAGQLDKAKELIESMPFQPDAMVWMT 577

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +CR+HGN  +   VA+ L   EP   + Y  +S+ YS  G +     +++    R L
Sbjct: 578 LLGACRIHGNMELASDVASHLFVAEPRQHSTYVLLSSMYSGRGMWSDRATVQKVMKNRGL 637

Query: 652 TRDIGHSLIEV-NSCH 666
           ++  G S IEV N  H
Sbjct: 638 SKVPGWSWIEVKNEVH 653



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/456 (28%), Positives = 223/456 (48%), Gaps = 9/456 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++S++  +D + K G L+ A+++FD MP R+ V++N LI+G  + R P QA+ L+ EM 
Sbjct: 129 NVFSASALLDVYAKCGRLSDARRVFDGMPVRNTVSWNALIAGYAESRKPAQAMELFLEMQ 188

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +    +TF+++L+      +Y+   Q+H ++   G  L L + +  +  Y + G   
Sbjct: 189 RVELVPDDATFAALLATVEGPSWYSLMQQLHGKIAKYGSALGLVVLNAAITAYSQCGAFA 248

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGC 221
            +  +FD +  R+L +WN ML A+      DE +R + +M  E GV+P+  SF  +V  C
Sbjct: 249 DSRRIFDGIQSRDLISWNSMLGAYAYHGMDDEAMRFFVRMMRESGVQPDMYSFTSVVSVC 308

Query: 222 SIGMLLD-EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS---LIEAKKSFDFIPVDD 277
           S     D +G+ +HS V+K+G   V   V NA++  Y+       + +A K FD +   D
Sbjct: 309 SEHGCDDRQGRSIHSLVVKIGLEGVT-HVCNAMIAMYTRFTENCMMEDAYKCFDSLVFKD 367

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +SWNS+++ Y+ + L  DAL  F  M+         +    L   S    +  G+Q+H 
Sbjct: 368 AVSWNSMLTGYSHHGLSSDALRFFRFMRAENVSTDEFALSAALRSCSDLAVLRLGRQVHS 427

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            V + GF      V S+L  MY KC ++  +   FE A   S    NS+M      G  +
Sbjct: 428 LVIQSGFSSNDF-VSSSLIFMYSKCGMVGDARKSFEEADKGSSVPWNSMMFGYAQHGQAQ 486

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
              ++F  M+D  + LD VT    L A S     + GS  +L+    +      +     
Sbjct: 487 TVTDLFSEMLDHKVPLDHVTFVALLTAYSHGGLVDEGS-EILNSMETRYKIPLRMEHYAC 545

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
            +D Y R G ++ + ++ E +P  P+ + + +++  
Sbjct: 546 GVDLYGRAGQLDKAKELIESMPFQPDAMVWMTLLGA 581


>gi|125573515|gb|EAZ15030.1| hypothetical protein OsJ_04972 [Oryza sativa Japonica Group]
          Length = 813

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 181/627 (28%), Positives = 318/627 (50%), Gaps = 21/627 (3%)

Query: 53  DFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA--LYLYDEMVSHGIKESA 110
           D + SGHL+ A  LFD++P+ D+ TYN LI           A  L+LY  M+ H +  + 
Sbjct: 66  DHIASGHLSRAHHLFDQIPSPDVRTYNDLIRAYSSSSPTAAADGLHLYRRMLRHRVAPNN 125

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF   L  CS    +  G  IH   +  G   +L++ + L+D+Y++      A  +F  
Sbjct: 126 YTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCACLPDAAHIFAT 185

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLR--MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           +P R+L  WN ML  +         +   +  +M+   + PN  +   ++   +    L 
Sbjct: 186 MPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALLPLLAQQGALA 245

Query: 229 EGKQLHSHVIKL---------GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           +G  +H++ I+            +   + +  AL+D Y+ CGSL+ A++ FD +P  + +
Sbjct: 246 QGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRVFDAMPARNEV 305

Query: 280 SWNSIVSIYADYDLIFDALELFFRM---QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +W++++  +     +  A  LF  M    LC   P+  S    L   +   ++  G+Q+H
Sbjct: 306 TWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASLDHLRMGEQLH 363

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             + K G  H  +   ++L  MY K  +I+ ++A+F+    +     ++L++  + +G  
Sbjct: 364 ALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSALVSGYVQNGRA 422

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++A  +F  M    +  D  T+ + + A S  A+   G C   H   I  G  S  ++  
Sbjct: 423 EEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS--HGSVIIRGLASETSICN 480

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG I+LS QVF  +PS ++V + +++ GY  +G+G+EA  +   M   G  P
Sbjct: 481 ALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALFLEMNNLGFPP 540

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D VTF+C+L+ C+HSG+V EG+  F+ M   YG+    +HY CM+D+L R G LD+A E 
Sbjct: 541 DGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSRGGFLDEAYEF 600

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +Q  P   D  +W +LL +CRV+ N  +G++V+ ++ EL P     +  +SN YS  G F
Sbjct: 601 IQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLLSNIYSAAGRF 660

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
           + + ++R     +   +  G S IE+N
Sbjct: 661 DEAAEVRIIQKVQGFKKSPGCSWIEIN 687



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 221/492 (44%), Gaps = 24/492 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK--FRHPKQALYLY 98
           Q +++ S   +D +VK   L  A  +F  MPARD+V +N +++G       H   A  L 
Sbjct: 157 QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 216

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN----------LYIG 148
            +M  H ++ +AST  ++L + +  G   +G  +H   +      N          + +G
Sbjct: 217 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 276

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-- 206
           + L+D+Y + G  + A  +FD +P RN  TW+ ++  F   SR  +   ++  M A+G  
Sbjct: 277 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 336

Query: 207 -VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            + P   S    +R C+    L  G+QLH+ + K G V  ++   N+L+  Y+  G + +
Sbjct: 337 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQ 393

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A   FD + V D +S++++VS Y       +A  +F +MQ C   P   + V  +   S 
Sbjct: 394 AIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 453

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  G+  HG V   G       + +AL DMY KC  I+ S  VF   P R +   N+
Sbjct: 454 LAALQHGRCSHGSVIIRGLA-SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 512

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++      G  K+A  +F  M + G   D VT    L A S S     G     H     
Sbjct: 513 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK-HWFHVMGHG 571

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGRE 501
            G    +     ++D  SR G ++ +++  + +P   +V  + +++     Y    +G++
Sbjct: 572 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 631

Query: 502 ALDMLEVMIQRG 513
              M++ +   G
Sbjct: 632 VSRMIQELGPEG 643


>gi|414867142|tpg|DAA45699.1| TPA: hypothetical protein ZEAMMB73_401104 [Zea mays]
          Length = 746

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 176/565 (31%), Positives = 300/565 (53%), Gaps = 12/565 (2%)

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPS 161
           +H ++  + TF  ++             Q+H   L LG    N++    LV  Y+R G  
Sbjct: 62  AHPLRPDSFTFPPLVRAAPGP---ASAAQLHACALRLGLLHPNVFASGSLVHAYLRFGRV 118

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FDE+PER++  WN ML   C  +R  + + +  +M  EGV  + ++   ++  C
Sbjct: 119 AEAYRVFDEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMC 178

Query: 222 SIGMLLDEGKQL--HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            +  L D    L  H + +K G +   +FV NAL+D Y   G L EA   F  + + D++
Sbjct: 179 VV--LGDRALALVMHVYAVKHG-LSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLV 235

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WNSI+S       +  A+ELF  M      P + + V   +  ++ G+    K +H YV
Sbjct: 236 TWNSIISANEQGGKVAAAVELFHGMMESGVCPDVLTLVSLASAVAQCGDELGAKSVHCYV 295

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + G+D G +   +A+ DMY K + I+++  VF++ P R +   N+L+T  + +G   +A
Sbjct: 296 RRRGWDVGDIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEA 355

Query: 400 VEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           + ++  M + EG+   + T  + L A S       G    +H  +IK+G   ++ V+  L
Sbjct: 356 IRIYNDMHNHEGLKPIQGTFVSVLPAYSYLGGLQQG--MRMHALSIKTGLNLDVYVTTCL 413

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++CG +  +  +FE +P  +   + +I+ G   +G G +AL +   M Q  + PD 
Sbjct: 414 IDLYAKCGKLVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDH 473

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ +LA C+H+G+V +G+  F+ M++VYGI    +HY+CM+DMLGRAG LD+A E +Q
Sbjct: 474 VTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYTCMVDMLGRAGQLDEAFEFIQ 533

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   D  +W +LL +CR+HGN  +G+  +  L EL+P +   Y  +SN Y++IG+++ 
Sbjct: 534 SMPIKPDSAVWGALLGACRIHGNVEMGKVASQNLFELDPENVGYYVLMSNMYAKIGKWDG 593

Query: 639 SMQIRETALARKLTRDIGHSLIEVN 663
              +R     + L +  G S +EV 
Sbjct: 594 VDAVRSLVRRQNLQKTPGWSSMEVK 618



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 152/597 (25%), Positives = 268/597 (44%), Gaps = 67/597 (11%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P VR     AP   S   L +  L      PN    +++S   +  +++ G +  A ++F
Sbjct: 74  PLVRA----APGPASAAQLHACALRLGLLHPN----VFASGSLVHAYLRFGRVAEAYRVF 125

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
           DEMP RD+  +N ++SG  +      A+ L   MV  G+   A T SSVL +C   G   
Sbjct: 126 DEMPERDVPAWNAMLSGLCRNTRAADAVTLLGRMVGEGVAGDAVTLSSVLPMCVVLGDRA 185

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
             + +H   +  G    L++ + L+D+Y ++G    A  +F  +  R+L TWN ++ A  
Sbjct: 186 LALVMHVYAVKHGLSGELFVCNALIDVYGKLGMLTEAHWVFGGMALRDLVTWNSIISANE 245

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWVDV 245
           +  +    + +++ M   GV P+ L+   +    ++    DE   K +H +V + GW   
Sbjct: 246 QGGKVAAAVELFHGMMESGVCPDVLTLVSL--ASAVAQCGDELGAKSVHCYVRRRGWDVG 303

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +I   NA+VD Y+    +  A+K FD +P  DV+SWN++++ Y    L  +A+ ++  M 
Sbjct: 304 DIIAGNAMVDMYAKMSKIDAAQKVFDNLPDRDVVSWNTLITGYMQNGLANEAIRIYNDMH 363

Query: 306 LCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                +P   +FV  L   S  G +  G ++H    K G +   V+V + L D+Y KC  
Sbjct: 364 NHEGLKPIQGTFVSVLPAYSYLGGLQQGMRMHALSIKTGLNL-DVYVTTCLIDLYAKCGK 422

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  ++ +FE  P RS    N+++  L   G+   A+ +F  M  E I  D VT  + L A
Sbjct: 423 LVEAMFLFEHMPRRSTGPWNAIIAGLGVHGHGAKALSLFSQMQQEEIKPDHVTFVSLLAA 482

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            S +   + G          +S F                    +L   V+  +P     
Sbjct: 483 CSHAGLVDQG----------RSFF--------------------DLMQTVYGIVPIAK-- 510

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T +++   R G   EA + ++ M  +   PD   +  +L  C   G V+ G++   + 
Sbjct: 511 HYTCMVDMLGRAGQLDEAFEFIQSMPIK---PDSAVWGALLGACRIHGNVEMGKV---AS 564

Query: 545 KSVYGIDADR-QHYSCMIDMLGRAGILDKAEEL--------LQQTPGGGDCMMWSSL 592
           ++++ +D +   +Y  M +M  + G  D  + +        LQ+TPG      WSS+
Sbjct: 565 QNLFELDPENVGYYVLMSNMYAKIGKWDGVDAVRSLVRRQNLQKTPG------WSSM 615


>gi|222626149|gb|EEE60281.1| hypothetical protein OsJ_13335 [Oryza sativa Japonica Group]
          Length = 1135

 Score =  304 bits (779), Expect = 8e-80,   Method: Compositional matrix adjust.
 Identities = 192/645 (29%), Positives = 332/645 (51%), Gaps = 23/645 (3%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           L S+   D+ C  +P  ++    + ++  VKSG L  A  LFD MP +++V +  ++SG 
Sbjct: 32  LCSAAAADNGCAESP--DVVLECKRLNRLVKSGRLADALDLFDRMPRKNVVAWTSVMSGY 89

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
            +   P+ AL ++ +MV  G+  +    ++ L  C++ G    G Q+H   +  GF  + 
Sbjct: 90  TRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAGEQVHSLAVRAGFAGDA 149

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           +IGS L+++Y R G    A ++FD +   ++  +  ++ AFC     +       +M  +
Sbjct: 150 WIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALIQMLKQ 209

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLI 264
           G++PN  +   ++  C   +    G+Q+H ++IK +G    +++ + AL+DFYS  G   
Sbjct: 210 GLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSVYSSTALIDFYSRNGEFK 265

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA- 323
            AK  FD +   +V+SW S++ +Y     + +AL++F  M        I   V+   FA 
Sbjct: 266 LAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDM--------ISEGVDPNEFAL 317

Query: 324 ----SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
                  G++  G+Q+H    K       + V +AL  MYG+  ++E   A+        
Sbjct: 318 SIVLGACGSIGLGRQLHCSAIKHDL-ITDIRVSNALLSMYGRTGLVEELEAMLNKIENPD 376

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           L    + +++   +G  + A+ +   M  EG   +    S+ L + +  AS + G     
Sbjct: 377 LVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQG--MQF 434

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           HC A+K G +S I    +L++ YS+CG +  +   F+ + + +V  + S+++G++++G  
Sbjct: 435 HCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDA 494

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            +AL++   M   G+ PD  TFL VL GCNHSGMV+EG+L F  M   Y       HY+C
Sbjct: 495 NKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHYAC 554

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           MIDMLGR G  D+A  ++   P   D ++W +LL SC++H N  IG+  A+ LMEL   D
Sbjct: 555 MIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLDIGKLAADRLMELSDRD 614

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            A Y  +SN Y+  GE+E + ++R       + +D G S IE+N+
Sbjct: 615 SASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEINN 659


>gi|413932901|gb|AFW67452.1| hypothetical protein ZEAMMB73_642603 [Zea mays]
          Length = 853

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 180/659 (27%), Positives = 346/659 (52%), Gaps = 7/659 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  +  +C ++  +S   L+    +     N +Y  +  +  +  +G L +A+  
Sbjct: 139 PDAHTLPYVVKSCAALGAMSLGRLVHRTARAIGLANDVYVGSALVKMYADAGLLGNARDA 198

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD +P RD V +N+++ GC K      A+ L+  M + G + + +T +  LSVC+     
Sbjct: 199 FDGIPERDCVLWNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADL 258

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G Q+H   +  G    + + + L+ +Y +      A  LF+ +P+ +L TWN M+   
Sbjct: 259 LSGAQLHSLAVKCGLEPEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGC 318

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +     E   ++  M+  G  P+ ++   ++   +    L +GK++H ++++   V+++
Sbjct: 319 VQNGLFVEAFGLFYDMQRSGARPDSITLVSLLPALTDLNGLKQGKEVHGYIVR-NCVNMD 377

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF-FRMQ 305
           +F+ +ALVD Y  C  +  A+  +D     DV+  ++++S Y    +  +AL++F + ++
Sbjct: 378 VFLVSALVDIYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLE 437

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
            C K P+  +    L   +    +  G+QIHGYV +  ++    +V+SAL DMY KC  +
Sbjct: 438 QCIK-PNAVTIASVLPGCASMAALPLGQQIHGYVLRNAYER-KCYVESALMDMYAKCGRL 495

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           + S  +F     +     NS+++S   +G  ++A+++F  M  EGI  + +T+S  L A 
Sbjct: 496 DLSHYIFLKMSQKDEVTWNSMISSFSQNGKPQEALDLFRQMCMEGIKYNNITISAALSAC 555

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +   +   G  + +H   IK   +++I    +L+D Y++CG++EL+ +VFE +P  N V 
Sbjct: 556 ASLPAIYYG--KEIHGVTIKGPIKADIFAESALIDMYAKCGNLELALRVFEFMPDKNEVS 613

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + SI++ Y  +G+ +E++ +L  M + G  PD VTFL +++ C H+G+V+EG  +F  M 
Sbjct: 614 WNSIISAYGAHGLVKESVSLLHGMQEEGYKPDHVTFLALISACAHAGLVEEGVQLFQCMT 673

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             Y I    +H++CM+D+  R+G LDKA + +   P   D  +W +LL +CRVH N  + 
Sbjct: 674 KKYLIAPRMEHFACMVDLYSRSGKLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELA 733

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
              +  L +L+P +   Y  +SN  +  G ++   ++R      K+ +  G+S ++VN+
Sbjct: 734 DIASQELFKLDPANSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNN 792



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 124/504 (24%), Positives = 237/504 (47%), Gaps = 20/504 (3%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVL---SLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           SA    +VL  C +A     G+QIH R +   +L    +L + + L+ +Y+       A+
Sbjct: 31  SADRLLAVLRGCVSAPHLPLGLQIHARAVVSGALSDHNHLALHTRLLGMYVLARRFRDAV 90

Query: 166 DLFDELPERNLAT---WNLMLRAFCELSRPDEVLRMYNKMKAE--GVEPNGLSFCYMVRG 220
            +F  LP    A+   WN ++R F    +    +  Y KM +      P+  +  Y+V+ 
Sbjct: 91  AVFSALPRAAAASSLPWNWLIRGFTAAGQHHLAVLFYVKMWSHPAAPSPDAHTLPYVVKS 150

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    +  G+ +H     +G  + +++V +ALV  Y+  G L  A+ +FD IP  D + 
Sbjct: 151 CAALGAMSLGRLVHRTARAIGLAN-DVYVGSALVKMYADAGLLGNARDAFDGIPERDCVL 209

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN ++        +  A+ LF  M+     P+  +   FL+  +   ++  G Q+H    
Sbjct: 210 WNVMMDGCIKAGDVDGAVRLFRNMRASGCEPNFATLACFLSVCATDADLLSGAQLHSLAV 269

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K G +   V V + L  MY KC  ++ +  +FE  P   L   N +++  + +G   +A 
Sbjct: 270 KCGLE-PEVAVANTLLAMYAKCQCLDDAWRLFELMPQDDLVTWNGMISGCVQNGLFVEAF 328

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M   G   D +TL + L AL+       G  + +H   +++    ++ +  +L+D
Sbjct: 329 GLFYDMQRSGARPDSITLVSLLPALTDLNGLKQG--KEVHGYIVRNCVNMDVFLVSALVD 386

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +C  + ++  +++   + +VV  +++++GY  NGM  EAL M   ++++ + P+ VT
Sbjct: 387 IYFKCRDVRMAQNLYDAARAIDVVIGSTMISGYVLNGMSEEALQMFRYLLEQCIKPNAVT 446

Query: 521 FLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHY--SCMIDMLGRAGILDKAEELL 577
              VL GC     +  GQ +    +++ Y    +R+ Y  S ++DM  + G LD +  + 
Sbjct: 447 IASVLPGCASMAALPLGQQIHGYVLRNAY----ERKCYVESALMDMYAKCGRLDLSHYIF 502

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGN 601
            +     D + W+S++ S   +G 
Sbjct: 503 LKM-SQKDEVTWNSMISSFSQNGK 525


>gi|297802780|ref|XP_002869274.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297315110|gb|EFH45533.1| hypothetical protein ARALYDRAFT_491483 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 686

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 191/617 (30%), Positives = 323/617 (52%), Gaps = 12/617 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  +  + K+G  ++A  +F+ +   D+V++N ++SG   F   + AL     M S G+
Sbjct: 39  SNAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTILSG---FDDNQIALNFVVRMKSAGV 95

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
              A T+S+ LS C  +  +  G+Q+   V+  G   +L +G+  + +Y R G    A  
Sbjct: 96  VFDAFTYSTALSFCVGSEGFRLGLQLQSTVVKSGLESDLVVGNSFITMYSRSGSFRGARR 155

Query: 167 LFDELPERNLATWNLMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           +FDE+P +++ +WN +L     E +   E + ++  M  EGVE + +SF  ++  C    
Sbjct: 156 VFDEMPFKDMISWNSLLSGLSQEGTFGFEAVLIFRDMMREGVELDHVSFTSVITTCCHET 215

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L   +Q+H   IK G+  + + V N L+  YS CG L   K  F  +   +V+SW +++
Sbjct: 216 DLKLARQIHGLCIKRGYESL-LEVGNILMSRYSKCGVLEAVKSVFYQMSERNVVSWTTMI 274

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S   D     DA+ +F  M+L    P+  +FV  LN       +  G +IHG   K GF 
Sbjct: 275 SSNRD-----DAVSIFLNMRLDGVYPNEVTFVGLLNAVKCNEQIKEGLKIHGLCIKTGF- 328

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
                V ++   MY K   +E +   F+    R +   N++++    +G   +A++MF  
Sbjct: 329 VSEPSVGNSFITMYAKFEALEDAKKAFDDITFREIISWNAMISGFAQNGFSHEALKMFLS 388

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
              E +  +E T  + L A++ +   ++   +  H   +K G  S   VS +L+D Y++ 
Sbjct: 389 ATAETMP-NEYTFGSVLNAIAFAEDISVKHGQRCHAHLLKLGLNSCPVVSSALLDMYAKR 447

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G+I  S +VF ++   N   +TSI++ YS +G     +++   MI+  + PD VTFL VL
Sbjct: 448 GNINESEKVFNEMSQRNQFVWTSIISAYSSHGDFNSVMNLFHEMIKENVAPDLVTFLSVL 507

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             CN  GMV +G  + N M   Y ++   +HYSCM+DMLGRAG L +AEEL+ + PGG  
Sbjct: 508 TACNRKGMVDKGHEILNMMIEDYNLEPSHEHYSCMVDMLGRAGRLKEAEELMSEVPGGPG 567

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             M  S+L SCR+HGN  +G +VA + ME++P     Y Q+ N Y+E  +++ + +IR+ 
Sbjct: 568 ESMLQSMLGSCRLHGNVKMGAKVAELAMEMKPELSGSYVQMYNIYAEKEQWDKAAEIRKA 627

Query: 646 ALARKLTRDIGHSLIEV 662
              + ++++ G S I+V
Sbjct: 628 MRKKNVSKEAGFSWIDV 644



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 125/487 (25%), Positives = 232/487 (47%), Gaps = 30/487 (6%)

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
           G    G QIH    + GF   + + + ++ +Y + G    AL +F+ L + ++ +WN +L
Sbjct: 15  GDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNALYIFENLVDPDVVSWNTIL 74

Query: 184 RAFCELSRPDEVLRMYNKMKAEGV------EPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
             F +       L    +MK+ GV          LSFC    G  +G+      QL S V
Sbjct: 75  SGFDD---NQIALNFVVRMKSAGVVFDAFTYSTALSFCVGSEGFRLGL------QLQSTV 125

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS-IYADYDLIFD 296
           +K G ++ ++ V N+ +  YS  GS   A++ FD +P  D+ISWNS++S +  +    F+
Sbjct: 126 VKSG-LESDLVVGNSFITMYSRSGSFRGARRVFDEMPFKDMISWNSLLSGLSQEGTFGFE 184

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A+ +F  M          SF   +       ++   +QIHG   K G++   + V + L 
Sbjct: 185 AVLIFRDMMREGVELDHVSFTSVITTCCHETDLKLARQIHGLCIKRGYE-SLLEVGNILM 243

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
             Y KC V+E+  +VF     R++    ++++S     N  DAV +F  M  +G+  +EV
Sbjct: 244 SRYSKCGVLEAVKSVFYQMSERNVVSWTTMISS-----NRDDAVSIFLNMRLDGVYPNEV 298

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T    L A+  +     G    +H   IK+GF S  +V  S +  Y++   +E + + F+
Sbjct: 299 TFVGLLNAVKCNEQIKEG--LKIHGLCIKTGFVSEPSVGNSFITMYAKFEALEDAKKAFD 356

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG--MV 534
            I    ++ + ++++G+++NG   EAL M  +      +P++ TF  VL     +    V
Sbjct: 357 DITFREIISWNAMISGFAQNGFSHEALKMF-LSATAETMPNEYTFGSVLNAIAFAEDISV 415

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           K GQ     +  + G+++     S ++DM  + G ++++E++  +        +W+S++ 
Sbjct: 416 KHGQRCHAHLLKL-GLNSCPVVSSALLDMYAKRGNINESEKVFNEMSQRNQ-FVWTSIIS 473

Query: 595 SCRVHGN 601
           +   HG+
Sbjct: 474 AYSSHGD 480



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 54/189 (28%), Positives = 90/189 (47%), Gaps = 11/189 (5%)

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           +DEVTL   LKA       +L     +H  +   GF S + VS ++M  Y + G  + + 
Sbjct: 1   MDEVTLCLALKA----CRGDLKRGCQIHGFSTTCGFTSFVCVSNAVMGMYRKAGRFDNAL 56

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            +FE +  P+VV + +I++G+  N +   AL+ +  M   G++ D  T+   L+ C  S 
Sbjct: 57  YIFENLVDPDVVSWNTILSGFDDNQI---ALNFVVRMKSAGVVFDAFTYSTALSFCVGSE 113

Query: 533 MVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
             + G QL    +KS  G+++D    +  I M  R+G    A  +  + P   D + W+S
Sbjct: 114 GFRLGLQLQSTVVKS--GLESDLVVGNSFITMYSRSGSFRGARRVFDEMP-FKDMISWNS 170

Query: 592 LLRSCRVHG 600
           LL      G
Sbjct: 171 LLSGLSQEG 179


>gi|357115175|ref|XP_003559367.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Brachypodium distachyon]
          Length = 849

 Score =  304 bits (779), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 175/622 (28%), Positives = 329/622 (52%), Gaps = 4/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  +  I  +  +G L+ A+++FD M  RD V +N+++ G  K      A+ L+  M 
Sbjct: 181 DMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVMR 240

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G   + +T +  LSVC+       G+Q+H   +  G    + + + LV +Y +     
Sbjct: 241 ASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLE 300

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  +P  +L TWN M+    +    D+ LR++  M+  G++P+ ++   ++   +
Sbjct: 301 EAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALT 360

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                 +GK++H ++++     V++F+ +ALVD Y  C  +  A+  FD     DV+  +
Sbjct: 361 ELNGFKQGKEIHGYIVR-NCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVIGS 419

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S Y    +   A+++F  +     +P+       L   +    +  G+++HGYV K 
Sbjct: 420 TMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIGQELHGYVLKN 479

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            ++ G  +V+SAL DMY KC  ++ S  +F     +     NS+++S   +G  ++A+++
Sbjct: 480 AYE-GRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEALDL 538

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M+ EG+  + VT+S+ L A +   +   G  + +H   IK    +++    +L+D Y
Sbjct: 539 FRQMIMEGVKYNNVTISSILSACAGLPAIYYG--KEIHGIIIKGPIRADLFAESALIDMY 596

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG++EL+ +VFE +P  N V + SI++ Y  +G+ +E++D+L  M + G   D VTFL
Sbjct: 597 GKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVDLLCCMQEEGFKADHVTFL 656

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +++ C H+G V+EG  +F  M   Y I+   +H SCM+D+  RAG LDKA + +   P 
Sbjct: 657 ALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLYSRAGKLDKAMQFIADMPF 716

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +CRVH N  +    +  L +L+P +   Y  +SN  +  G ++   ++
Sbjct: 717 KPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNCGYYVLMSNINAVAGRWDGVSKM 776

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R     +K+ +  G+S ++VN+
Sbjct: 777 RRLMKDKKVQKIPGYSWVDVNN 798



 Score =  233 bits (593), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 162/579 (27%), Positives = 287/579 (49%), Gaps = 17/579 (2%)

Query: 28  SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISG 84
           +S LLD+   P P        R +  +V +     A  +F  +P   A   + +N LI G
Sbjct: 64  TSGLLDA-AGPGPAA---LQTRLVGMYVLARRFRDAVAVFSSLPRAAAAAALPWNWLIRG 119

Query: 85  CGKFRHPKQALYLYDEMVSH--GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG 142
                H + A+  Y +M +H    +    T   V+  C+  G    G  +H    +LG  
Sbjct: 120 FTMAGHHRLAVLFYVKMWAHPSSPRPDGHTLPYVVKSCAALGALHLGRLVHRTTRALGLD 179

Query: 143 LNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM 202
            ++Y+GS L+ +Y   G    A ++FD + ER+   WN+M+  + +       + ++  M
Sbjct: 180 RDMYVGSALIKMYADAGLLDGAREVFDGMDERDCVLWNVMMDGYVKAGDVASAVGLFRVM 239

Query: 203 KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
           +A G +PN  +    +  C+    L  G QLH+  +K G ++  + VAN LV  Y+ C  
Sbjct: 240 RASGCDPNFATLACFLSVCAAEADLLSGVQLHTLAVKYG-LEPEVAVANTLVSMYAKCQC 298

Query: 263 LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
           L EA + F  +P DD+++WN ++S      L+ DAL LF  MQ    +P   +    L  
Sbjct: 299 LEEAWRLFGLMPRDDLVTWNGMISGCVQNGLVDDALRLFCDMQKSGLQPDSVTLASLLPA 358

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
            +       GK+IHGY+ +    H  V + SAL D+Y KC  +  +  VF++     +  
Sbjct: 359 LTELNGFKQGKEIHGYIVR-NCAHVDVFLVSALVDIYFKCRDVRMAQNVFDATKSIDVVI 417

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            +++++  + +   + AV+MF +++  GI  + V +++TL A +  A+  +G  + LH  
Sbjct: 418 GSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPACASMAAMRIG--QELHGY 475

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
            +K+ +E    V  +LMD YS+CG ++LSH +F K+ + + V + S+++ +++NG   EA
Sbjct: 476 VLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTWNSMISSFAQNGEPEEA 535

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG-IDADRQHYSCMI 561
           LD+   MI  G+  + VT   +L+ C     +  G+ +   +  + G I AD    S +I
Sbjct: 536 LDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGII--IKGPIRADLFAESALI 593

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           DM G+ G L+ A  + +  P   + + W+S++ +   HG
Sbjct: 594 DMYGKCGNLELALRVFEHMPEKNE-VSWNSIISAYGAHG 631



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/415 (23%), Positives = 200/415 (48%), Gaps = 5/415 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPN-PQLNIYSSNRTIDDFVKSGH 59
           M  + L P   T+ +L P  T +        +  Y   N   ++++  +  +D + K   
Sbjct: 340 MQKSGLQPDSVTLASLLPALTELNGFKQGKEIHGYIVRNCAHVDVFLVSALVDIYFKCRD 399

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ +FD   + D+V  + +ISG    R  + A+ ++  +++ GIK +A   +S L  
Sbjct: 400 VRMAQNVFDATKSIDVVIGSTMISGYVLNRMSEAAVKMFRYLLALGIKPNAVMVASTLPA 459

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G ++H  VL   +    Y+ S L+D+Y + G    +  +F ++  ++  TW
Sbjct: 460 CASMAAMRIGQELHGYVLKNAYEGRCYVESALMDMYSKCGRLDLSHYMFSKMSAKDEVTW 519

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+ +F +   P+E L ++ +M  EGV+ N ++   ++  C+    +  GK++H  +IK
Sbjct: 520 NSMISSFAQNGEPEEALDLFRQMIMEGVKYNNVTISSILSACAGLPAIYYGKEIHGIIIK 579

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  ++F  +AL+D Y  CG+L  A + F+ +P  + +SWNSI+S Y  + L+ ++++
Sbjct: 580 -GPIRADLFAESALIDMYGKCGNLELALRVFEHMPEKNEVSWNSIISAYGAHGLVKESVD 638

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L   MQ    +    +F+  ++  +  G V  G ++   +T+       V   S + D+Y
Sbjct: 639 LLCCMQEEGFKADHVTFLALISACAHAGQVQEGLRLFRCMTEEYHIEPQVEHLSCMVDLY 698

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
            +   ++ ++      P    +    +  +LLH+  +   VE+      E   LD
Sbjct: 699 SRAGKLDKAMQFIADMP---FKPDAGIWGALLHACRVHRNVELAEIASQELFKLD 750



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 149/344 (43%), Gaps = 12/344 (3%)

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN----IFVANALVDFYSA 259
           A    P       ++RGC     L  G ++H+  +  G +D        +   LV  Y  
Sbjct: 29  ATNASPCAYRLLALLRGCVAPSHLPLGLRIHARAVTSGLLDAAGPGPAALQTRLVGMYVL 88

Query: 260 CGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRM--QLCRKRPSIR 314
                +A   F  +P       + WN ++  +        A+  + +M       RP   
Sbjct: 89  ARRFRDAVAVFSSLPRAAAAAALPWNWLIRGFTMAGHHRLAVLFYVKMWAHPSSPRPDGH 148

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           +    +   +  G ++ G+ +H     LG D   ++V SAL  MY    +++ +  VF+ 
Sbjct: 149 TLPYVVKSCAALGALHLGRLVHRTTRALGLDR-DMYVGSALIKMYADAGLLDGAREVFDG 207

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
              R     N +M   + +G++  AV +F  M   G   +  TL+  L     +A A+L 
Sbjct: 208 MDERDCVLWNVMMDGYVKAGDVASAVGLFRVMRASGCDPNFATLACFLSV--CAAEADLL 265

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS 494
           S   LH  A+K G E  +AV+ +L+  Y++C  +E + ++F  +P  ++V +  +++G  
Sbjct: 266 SGVQLHTLAVKYGLEPEVAVANTLVSMYAKCQCLEEAWRLFGLMPRDDLVTWNGMISGCV 325

Query: 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           +NG+  +AL +   M + GL PD VT   +L         K+G+
Sbjct: 326 QNGLVDDALRLFCDMQKSGLQPDSVTLASLLPALTELNGFKQGK 369


>gi|357480155|ref|XP_003610363.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511418|gb|AES92560.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 734

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 187/626 (29%), Positives = 337/626 (53%), Gaps = 10/626 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQ---ALYL 97
           +IY +N  ++ + K+ HL+ A  LFD +    +D V++N LI+   +         A+ L
Sbjct: 45  SIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDVSWNSLINAFSQNHSSSSSSFAISL 104

Query: 98  YDEMV-SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           +  M+ ++ +  +A T + V S  SN      G Q H   +  G   ++Y+GS L+++Y 
Sbjct: 105 FRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQAHSVAVKTGCSGDVYVGSSLLNMYC 164

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A  LFD +PERN  +W  M+  +      D+ + ++  M+ E    N  +   
Sbjct: 165 KTGFVFDARKLFDRMPERNTVSWATMISGYASSDIADKAVEVFELMRREEEIQNEFALTS 224

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++   +  + +  G+Q+HS  IK G + + + VANALV  Y+ CGSL +A ++F+F    
Sbjct: 225 VLSALTSDVFVYTGRQVHSLAIKNGLLAI-VSVANALVTMYAKCGSLDDAVRTFEFSGDK 283

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           + I+W+++V+ YA       AL+LF +M      PS  + V  +N  S    V  GKQ+H
Sbjct: 284 NSITWSAMVTGYAQGGDSDKALKLFNKMHSSGVLPSEFTLVGVINACSDLCAVVEGKQMH 343

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +  KLGF    ++V SA+ DMY KC  +  +   FE      +    S++T  + +G+ 
Sbjct: 344 SFAFKLGFGL-QLYVLSAVVDMYAKCGSLADARKGFECVQQPDVVLWTSIITGYVQNGDY 402

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           +  + ++G M  E +  +E+T+++ L+A S  A+ + G  + +H   IK GF+  + +  
Sbjct: 403 EGGLNLYGKMQMERVIPNELTMASVLRACSSLAALDQG--KQMHARIIKYGFKLEVPIGS 460

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L   Y++CG ++  + +F ++PS +V+ + ++++G S+NG G +AL++ E M+  G+ P
Sbjct: 461 ALSAMYTKCGSLDDGYLIFWRMPSRDVISWNAMISGLSQNGHGNKALELFEKMLLEGIKP 520

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D VTF+ +L+ C+H G+V  G   F  M   + I    +HY+CM+D+L RAG L++A+E 
Sbjct: 521 DPVTFVNLLSACSHMGLVDRGWEYFKMMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEF 580

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           ++         +W  LL +C+ H N  +G      L+EL   + + Y  +S+ Y+ +G+ 
Sbjct: 581 IESATVDHGLCLWRILLGACKNHRNYELGVYAGEKLVELGSPESSAYVLLSSIYTALGDR 640

Query: 637 EVSMQIRETALARKLTRDIGHSLIEV 662
           E   ++R    AR + ++ G S IE+
Sbjct: 641 ENVERVRRIMKARGVNKEPGCSWIEL 666



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 243/496 (48%), Gaps = 20/496 (4%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL--PERNLA 177
           C++     +G  +H R+L  G   ++Y+ +  ++LY +      AL LFD +   +++  
Sbjct: 21  CTHNKNILKGRTLHARILKTGSISSIYVTNTFLNLYAKTNHLSHALTLFDSINDNDKDDV 80

Query: 178 TWNLMLRAFCE---LSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           +WN ++ AF +    S     + ++ + M+A  V PN  +   +    S    +  GKQ 
Sbjct: 81  SWNSLINAFSQNHSSSSSSFAISLFRRMMRANNVIPNAHTLAGVFSAASNLSDVVAGKQA 140

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           HS  +K G    +++V ++L++ Y   G + +A+K FD +P  + +SW +++S YA  D+
Sbjct: 141 HSVAVKTG-CSGDVYVGSSLLNMYCKTGFVFDARKLFDRMPERNTVSWATMISGYASSDI 199

Query: 294 IFDALELFFRMQLCRKRPSIR---SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
              A+E+F   +L R+   I+   +    L+  +    VY G+Q+H    K G     V 
Sbjct: 200 ADKAVEVF---ELMRREEEIQNEFALTSVLSALTSDVFVYTGRQVHSLAIKNGL-LAIVS 255

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL  MY KC  ++ +V  FE +  ++    ++++T     G+   A+++F  M   G
Sbjct: 256 VANALVTMYAKCGSLDDAVRTFEFSGDKNSITWSAMVTGYAQGGDSDKALKLFNKMHSSG 315

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +   E TL   + A S   +   G  + +H  A K GF   + V  +++D Y++CG +  
Sbjct: 316 VLPSEFTLVGVINACSDLCAVVEG--KQMHSFAFKLGFGLQLYVLSAVVDMYAKCGSLAD 373

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + + FE +  P+VV +TSI+ GY +NG     L++   M    +IP+++T   VL  C+ 
Sbjct: 374 ARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRACSS 433

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
              + +G+ +   +   YG   +    S +  M  + G LD    +  + P   D + W+
Sbjct: 434 LAALDQGKQMHARIIK-YGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMP-SRDVISWN 491

Query: 591 SLLR--SCRVHGNEII 604
           +++   S   HGN+ +
Sbjct: 492 AMISGLSQNGHGNKAL 507



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 74/281 (26%), Positives = 135/281 (48%), Gaps = 9/281 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S+ +LP   T+  +   C+ +  +     + S+  +    L +Y  +  +D + K G 
Sbjct: 311 MHSSGVLPSEFTLVGVINACSDLCAVVEGKQMHSFAFKLGFGLQLYVLSAVVDMYAKCGS 370

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+K F+ +   D+V +  +I+G  +    +  L LY +M    +  +  T +SVL  
Sbjct: 371 LADARKGFECVQQPDVVLWTSIITGYVQNGDYEGGLNLYGKMQMERVIPNELTMASVLRA 430

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS+     +G Q+H R++  GF L + IGS L  +Y + G       +F  +P R++ +W
Sbjct: 431 CSSLAALDQGKQMHARIIKYGFKLEVPIGSALSAMYTKCGSLDDGYLIFWRMPSRDVISW 490

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+    +    ++ L ++ KM  EG++P+ ++F  ++  CS   L+D G +      K
Sbjct: 491 NAMISGLSQNGHGNKALELFEKMLLEGIKPDPVTFVNLLSACSHMGLVDRGWEY----FK 546

Query: 240 LGWVDVNIFVA----NALVDFYSACGSLIEAKKSFDFIPVD 276
           + + + NI         +VD  S  G L EAK+  +   VD
Sbjct: 547 MMFDEFNIAPMVEHYACMVDILSRAGKLNEAKEFIESATVD 587


>gi|357438977|ref|XP_003589765.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355478813|gb|AES60016.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 960

 Score =  304 bits (778), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 198/698 (28%), Positives = 350/698 (50%), Gaps = 76/698 (10%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR--DMVTYNLLISGCGKFRHPKQA 94
           Q     NI++ N  I   V S  ++ A+KLFDEMP R  D V++  +ISG  +     ++
Sbjct: 67  QETHHRNIFTWNTMIRALVSSSRMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRS 126

Query: 95  LYLYDEMVSH----GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
              +  M+      G      +F+SV+  C + G     IQ+H  V  LGFG+   I + 
Sbjct: 127 FETFSLMIRDTNDGGKNYDPFSFTSVMKACGSLGDSRLAIQLHALVSKLGFGMETCIQNS 186

Query: 151 LVDLYMRMG--------------PSV-----------------RALDLFDELPERNLATW 179
           +V +Y++ G              PS+                 +AL +F+ +PER+  +W
Sbjct: 187 VVGMYVKCGDVDLAETVFFDIERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSW 246

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  F +     + L M+ +M  +G  PN +++  ++  C+    L  G  LH+ +++
Sbjct: 247 NTLISIFSQHGFGVQCLAMFVEMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILR 306

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           +    +++   N L+D Y+ CG L  AK+ F  +   D ISWNS+++    + L  DAL 
Sbjct: 307 ME-HSLDLVFGNGLIDMYAKCGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALI 365

Query: 300 LFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           LF +M+  R    +  F+    L   S       G+ +HGY  K G    S  V +A+  
Sbjct: 366 LFNQMR--RSSVVLDEFILPTILGVCSGPDYASTGELLHGYTIKSGMG-SSAPVGNAIIT 422

Query: 358 MYGKC----------------NVIESSVAV---------------FESAPGRSLECCNSL 386
           MY KC                N I  +  +               F+  P R++   NS+
Sbjct: 423 MYAKCGDTDKADLVFRLMPLRNTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSM 482

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +++ + +G  ++ ++++  M   G+  D +T +T+++A +  A   LG   + H  A K 
Sbjct: 483 LSTYVQNGFSEEGLKLYVSMRSNGVQPDWITFTTSIRACADLAIVKLGMQVVTH--ATKF 540

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G   N++V+ S++  YSRCG I+ +   F+ I   +++ + +++  +++NG+G + +D  
Sbjct: 541 GLSLNVSVANSIVTMYSRCGLIKEAKNTFDSIDDKDLISWNAMLAAFAQNGLGIKVIDTF 600

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
           E M++    P+ ++++ VL+GC+H G+V EG+  F+SM  V+GI    +H+SCM+D+LGR
Sbjct: 601 EDMLKTECKPNHISYVSVLSGCSHMGLVAEGKHYFDSMTRVFGISPTNEHFSCMVDLLGR 660

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           AG+L++A++L++  P   +  +WS+LL SCRVH +  +    A  LMEL+      Y  +
Sbjct: 661 AGLLEQAKDLIEGMPFKPNATVWSALLGSCRVHHDLRLAETAAKKLMELDVEGSEGYVLL 720

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           SN YSE GE +    +R+    + +    G S IEV++
Sbjct: 721 SNMYSESGELDNVADMRKLMKVKGIRTSRGCSWIEVDN 758



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 132/571 (23%), Positives = 242/571 (42%), Gaps = 109/571 (19%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           ++H +++  G   +L++ + L+ +Y   G +  A  +F E   RN+ TWN M+RA    S
Sbjct: 29  KLHAQLILSGLDSSLFLLNNLLHMYSNCGLTHDAFQVFQETHHRNIFTWNTMIRALVSSS 88

Query: 191 RPDEVLRMYNKMKAE------------GVEPNGL------SFCYMVRGC----------- 221
           R  +  +++++M               G   NG       +F  M+R             
Sbjct: 89  RMSDAEKLFDEMPVRVKDSVSWTTMISGYSQNGFHSRSFETFSLMIRDTNDGGKNYDPFS 148

Query: 222 ------SIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL---------- 263
                 + G L D     QLH+ V KLG+  +   + N++V  Y  CG +          
Sbjct: 149 FTSVMKACGSLGDSRLAIQLHALVSKLGF-GMETCIQNSVVGMYVKCGDVDLAETVFFDI 207

Query: 264 ---------------------IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
                                 +A + F+ +P  D +SWN+++SI++ +      L +F 
Sbjct: 208 ERPSLFCWNSMIYGYSQMYGPYKALQIFNRMPERDEVSWNTLISIFSQHGFGVQCLAMFV 267

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG-SVHVQSALTDMYGK 361
            M      P+  ++   L+  + T ++ +G  +H  + ++  +H   +   + L DMY K
Sbjct: 268 EMCNQGFSPNFMTYGSVLSACASTSDLKWGAHLHARILRM--EHSLDLVFGNGLIDMYAK 325

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  ++ +  VF+S         NSL+T ++H G  +DA+ +F  M    + LDE  L T 
Sbjct: 326 CGCLDLAKRVFKSLREHDHISWNSLITGVVHFGLGEDALILFNQMRRSSVVLDEFILPTI 385

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV------- 474
           L   S    A+ G   LLH   IKSG  S+  V  +++  Y++CG  + +  V       
Sbjct: 386 LGVCSGPDYASTG--ELLHGYTIKSGMGSSAPVGNAIITMYAKCGDTDKADLVFRLMPLR 443

Query: 475 ------------------------FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
                                   F+ +P  N+V + S+++ Y +NG   E L +   M 
Sbjct: 444 NTISWTAMITAFSRSGDIGKARGYFDMMPERNIVTWNSMLSTYVQNGFSEEGLKLYVSMR 503

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
             G+ PD +TF   +  C    +VK G Q+V ++ K  +G+  +    + ++ M  R G+
Sbjct: 504 SNGVQPDWITFTTSIRACADLAIVKLGMQVVTHATK--FGLSLNVSVANSIVTMYSRCGL 561

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + +A+          D + W+++L +   +G
Sbjct: 562 IKEAKNTFDSID-DKDLISWNAMLAAFAQNG 591


>gi|297819724|ref|XP_002877745.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297323583|gb|EFH54004.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 764

 Score =  303 bits (777), Expect = 1e-79,   Method: Compositional matrix adjust.
 Identities = 191/625 (30%), Positives = 333/625 (53%), Gaps = 10/625 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK-FRHPKQALYLYDEMVS 103
           Y +N  I  +V+ G L  A+KLFD+MP R++V+YN L S   +   +   A  L ++M S
Sbjct: 46  YKNNNLISMYVRCGSLEQARKLFDKMPERNVVSYNALYSAYSRNLDYASYAFSLINQMAS 105

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
             +K ++STF+S++ VC+       G  +H +++ LG+  N+ + + ++ +Y   G    
Sbjct: 106 ESLKPNSSTFTSLVQVCTVLEDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCGDLES 165

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F+ +   +   WN M+       + ++ L ++  M   GV+P   ++  ++  CS 
Sbjct: 166 ARRIFECVNGGDAVAWNTMIVGIFRNDKIEDGLMLFRSMLMSGVDPTQFTYSMVLNACSK 225

Query: 224 --GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                   GK +H+ +I +  +  ++ V NAL+D Y +CG + EA   F  I   +++SW
Sbjct: 226 LGSYRYSVGKLIHARMI-VSDILADLPVENALLDMYCSCGDMKEAFYVFGKIHNPNLVSW 284

Query: 282 NSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           NSI+S  ++      A+ ++ R+ ++   RP   +F   +   +       GK +HG VT
Sbjct: 285 NSIISGCSENGFGEQAILMYRRLLRISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQVT 344

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLG++  SV V + L  MY K    ES+  VF     R +     ++      GN + AV
Sbjct: 345 KLGYER-SVFVGTTLLSMYFKNGEAESAQKVFGVITERDVVLWTEMIVGESRVGNSECAV 403

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  M  E    D  +LS+ L A S  A    G  ++ H  AIK+GF++ ++VS +L+D
Sbjct: 404 QLFIEMYREKNRTDGFSLSSVLGACSDMAMLRQG--QVFHSLAIKTGFDNVMSVSGALVD 461

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y + G  E +  +F  + +P++ C+ S++  YS++GM  +A    E +++ G  PD VT
Sbjct: 462 MYGKNGKYETAESIFSLVSNPDLKCWNSMLGAYSQHGMVEKAQSFFEQILENGFTPDAVT 521

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           +L +LA C+H G  +EG+ ++N MK   GI A  +HYSCM+ ++ +AG+L +A EL++Q+
Sbjct: 522 YLSLLAACSHKGSTQEGKFLWNQMKE-QGITAGFKHYSCMVSLVSKAGLLGEALELIKQS 580

Query: 581 PG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
           P       +W +LL +C    N  IG   A+ +++L+P D A +  +SN Y+  G ++  
Sbjct: 581 PPENNQAELWRTLLSACVNARNLQIGLYAADQILKLDPEDTATHILLSNLYAVNGRWKDV 640

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
            ++R         +D G S IEVN+
Sbjct: 641 AEMRRKIRGLASAKDPGLSWIEVNN 665



 Score =  142 bits (358), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 125/488 (25%), Positives = 213/488 (43%), Gaps = 12/488 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVP-LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M S  L P   T T+L   CT +   L  SLL     +     N+      +  +   G 
Sbjct: 103 MASESLKPNSSTFTSLVQVCTVLEDVLMGSLLHSQIIKLGYSDNVVVQTSVLGMYSSCGD 162

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L SA+++F+ +   D V +N +I G  +    +  L L+  M+  G+  +  T+S VL+ 
Sbjct: 163 LESARRIFECVNGGDAVAWNTMIVGIFRNDKIEDGLMLFRSMLMSGVDPTQFTYSMVLNA 222

Query: 120 CSNAGF--YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           CS  G   Y+ G  IH R++      +L + + L+D+Y   G    A  +F ++   NL 
Sbjct: 223 CSKLGSYRYSVGKLIHARMIVSDILADLPVENALLDMYCSCGDMKEAFYVFGKIHNPNLV 282

Query: 178 TWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
           +WN ++    E    ++ + MY + ++     P+  +F   +   +       GK LH  
Sbjct: 283 SWNSIISGCSENGFGEQAILMYRRLLRISTPRPDEYTFSAAIPATAEPEKFIHGKLLHGQ 342

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           V KLG+ + ++FV   L+  Y   G    A+K F  I   DV+ W  ++   +       
Sbjct: 343 VTKLGY-ERSVFVGTTLLSMYFKNGEAESAQKVFGVITERDVVLWTEMIVGESRVGNSEC 401

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A++LF  M   + R    S    L   S    +  G+  H    K GFD+  + V  AL 
Sbjct: 402 AVQLFIEMYREKNRTDGFSLSSVLGACSDMAMLRQGQVFHSLAIKTGFDN-VMSVSGALV 460

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           DMYGK    E++ ++F       L+C NS++ +    G ++ A   F  +++ G   D V
Sbjct: 461 DMYGKNGKYETAESIFSLVSNPDLKCWNSMLGAYSQHGMVEKAQSFFEQILENGFTPDAV 520

Query: 417 TLSTTLKALSVSASANLGS--CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           T  + L A S   S   G      +    I +GF+     SC ++   S+ G +  + ++
Sbjct: 521 TYLSLLAACSHKGSTQEGKFLWNQMKEQGITAGFKH---YSC-MVSLVSKAGLLGEALEL 576

Query: 475 FEKIPSPN 482
            ++ P  N
Sbjct: 577 IKQSPPEN 584



 Score = 82.0 bits (201), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 129/274 (47%), Gaps = 13/274 (4%)

Query: 334 QIHGYVTKLGFDHGS--VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           Q+H  +   G    S   +  + L  MY +C  +E +  +F+  P R++   N+L ++  
Sbjct: 28  QLHAIILTAGAGSASESPYKNNNLISMYVRCGSLEQARKLFDKMPERNVVSYNALYSA-- 85

Query: 392 HSGNIKDAVEMFGF---MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
           +S N+  A   F     M  E +  +  T ++ ++  +V     +GS  LLH   IK G+
Sbjct: 86  YSRNLDYASYAFSLINQMASESLKPNSSTFTSLVQVCTVLEDVLMGS--LLHSQIIKLGY 143

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             N+ V  S++  YS CG +E + ++FE +   + V + +++ G  RN    + L +   
Sbjct: 144 SDNVVVQTSVLGMYSSCGDLESARRIFECVNGGDAVAWNTMIVGIFRNDKIEDGLMLFRS 203

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKE--GQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
           M+  G+ P + T+  VL  C+  G  +   G+L+   M  V  I AD    + ++DM   
Sbjct: 204 MLMSGVDPTQFTYSMVLNACSKLGSYRYSVGKLIHARMI-VSDILADLPVENALLDMYCS 262

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            G + +A  +  +     + + W+S++  C  +G
Sbjct: 263 CGDMKEAFYVFGKI-HNPNLVSWNSIISGCSENG 295


>gi|125561353|gb|EAZ06801.1| hypothetical protein OsI_29045 [Oryza sativa Indica Group]
          Length = 696

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 204/652 (31%), Positives = 335/652 (51%), Gaps = 28/652 (4%)

Query: 28  SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH--LNSAKKLFDEMPARDMVTYN-LLISG 84
           +SLL   +  P P       N+ +  + +S    L +A+++FDE+P RD V++N LL + 
Sbjct: 15  ASLLKSGFAAPTPW------NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAH 68

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
                HP +A  L   M + G+  +     S L   + A     G Q+    L  G   N
Sbjct: 69  AASGAHP-EAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANN 127

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           ++  S L+D+Y + G    A  +FD +PERN  +WN ++  + E       L ++ +M+ 
Sbjct: 128 VFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMER 187

Query: 205 EGVEPNGLSFCYM---VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           EG+ P+  +F  +   V G S  ++     QLH  ++K G   + + V NA +  YS CG
Sbjct: 188 EGLVPDEATFASLLTAVEGPSCFLM----HQLHGKIVKYG-SALGLTVLNAAITAYSQCG 242

Query: 262 SLIEAKKSFDFI-PVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEF 319
           SL ++++ FD I  + D+ISWN+++  Y    +  +A++ F RM Q     P + SF   
Sbjct: 243 SLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSI 302

Query: 320 LNFASRTG-NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN---VIESSVAVFESA 375
           ++  S  G + + G+ IHG V K   + G   V +AL  MY + N   ++E +   F S 
Sbjct: 303 ISSCSEHGHDDHQGRVIHGLVIKSALE-GVTPVCNALIAMYTRYNENCMMEDAYKCFNSL 361

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
             +     NS++T     G   DA++ F  M  E +  DE   S  L++ S  A   LG 
Sbjct: 362 VLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLG- 420

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + +H   I SGF SN  VS SL+  YS+ G I+ + + FE+    + V + +++ GY++
Sbjct: 421 -KQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +G       +   M+QR    D +TF+ ++  C+H+G+V EG  + N+M++ YG+    +
Sbjct: 480 HGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRME 539

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           HY+C +D+ GRAG LDKA++L+   P   D M+W +LL +CR+HGN  +   VA+ L   
Sbjct: 540 HYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVA 599

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           EP   + Y  +S+ YS +G +     ++     R L++  G SLIEV N  H
Sbjct: 600 EPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSLIEVKNEVH 651


>gi|359495457|ref|XP_003634994.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Vitis vinifera]
          Length = 993

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 181/625 (28%), Positives = 333/625 (53%), Gaps = 7/625 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +N  +  + K   LN A++LFD MP + D+V++N +IS         +AL L+ EM 
Sbjct: 251 VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQ 310

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +  +  TF + L  C ++ F  +G+ IH  VL   + +N+++ + L+ +Y R G   
Sbjct: 311 KASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSYYINVFVANALIAMYARFGKMG 370

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A ++F  + + +  +WN ML  F +     E L+ Y++M+  G +P+ ++   ++   +
Sbjct: 371 EAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASA 430

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  G Q+H++ +K G +D ++ V N+LVD Y+   S+      FD +P  DV+SW 
Sbjct: 431 RSGNTLNGMQIHAYAMKNG-LDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWT 489

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++ +A       ALELF  +QL      +      L   S    +   K+IH Y+ + 
Sbjct: 490 TIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLACSGLKLISSVKEIHSYIIRK 549

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     + +Q+ + D+YG+C  ++ +  +FE    + +    S+++  +H+G   +A+E+
Sbjct: 550 GLS--DLVLQNGIVDVYGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALEL 607

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M + G+  D ++L + L A +  ++   G  + +H   I+ GF    +++ +L+D Y
Sbjct: 608 FHLMKETGVEPDSISLVSILSAAASLSALKKG--KEIHGFLIRKGFVLEGSLASTLVDMY 665

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           +RCG +E S  VF  I + ++V +TS++N Y  +G GR A+D+   M    + PD + F+
Sbjct: 666 ARCGTLEKSRNVFNFIRNKDLVLWTSMINAYGMHGCGRAAIDLFRRMEDESIAPDHIAFV 725

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  C+HSG++ EG+    SMK  Y ++   +HY C++D+LGRA  L++A + ++    
Sbjct: 726 AVLYACSHSGLMNEGRRFLESMKYEYQLEPWPEHYVCLVDLLGRANHLEEAYQFVKGMEV 785

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                +W +LL +C++H N+ +G   A  L+E++P +   Y  VSN Y+    ++   ++
Sbjct: 786 EPTAEVWCALLGACQIHSNKELGEIAAQKLLEMDPENPGNYVLVSNVYAAERRWKDVEEV 845

Query: 643 RETALARKLTRDIGHSLIEV-NSCH 666
           R    A  L ++ G S IEV N  H
Sbjct: 846 RMRMKASGLKKNPGCSWIEVGNKVH 870



 Score =  246 bits (627), Expect = 4e-62,   Method: Compositional matrix adjust.
 Identities = 157/580 (27%), Positives = 297/580 (51%), Gaps = 11/580 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ S R +  + K G L  A+KLFD MP + + T+N +I        P  +L LY EM 
Sbjct: 149 SVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELYREMR 208

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI   A TF  +L  C        G ++H   +  G+   +++ + +V +Y +     
Sbjct: 209 VSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYVSIVFVANSIVGMYTKCNDLN 268

Query: 163 RALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A  LFD +PE+ ++ +WN M+ A+    +  E LR++ +M+   + PN  +F   ++ C
Sbjct: 269 GARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQAC 328

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                + +G  +H+ V+K  +  +N+FVANAL+  Y+  G + EA   F  +   D ISW
Sbjct: 329 EDSSFIKQGMFIHATVLKSSYY-INVFVANALIAMYARFGKMGEAANIFYNMDDWDTISW 387

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NS++S +    L  +AL+ +  M+   ++P + + +  +  ++R+GN   G QIH Y  K
Sbjct: 388 NSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQIHAYAMK 447

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G D   + V ++L DMY K   ++    +F+  P + +    +++     +G+   A+E
Sbjct: 448 NGLD-SDLQVGNSLVDMYAKFCSMKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALE 506

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  +  EGI LD + +S+ L  L+ S    + S + +H   I+ G  S++ +   ++D 
Sbjct: 507 LFREVQLEGIDLDVMMISSIL--LACSGLKLISSVKEIHSYIIRKGL-SDLVLQNGIVDV 563

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y  CG+++ + ++FE I   +VV +TS+++ Y  NG+  EAL++  +M + G+ PD ++ 
Sbjct: 564 YGECGNVDYAARMFELIEFKDVVSWTSMISCYVHNGLANEALELFHLMKETGVEPDSISL 623

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L+       +K+G+ +   +    G   +    S ++DM  R G L+K+  +     
Sbjct: 624 VSILSAAASLSALKKGKEIHGFLIR-KGFVLEGSLASTLVDMYARCGTLEKSRNVFNFIR 682

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621
              D ++W+S++ +  +HG    GR   ++   +E    A
Sbjct: 683 -NKDLVLWTSMINAYGMHG---CGRAAIDLFRRMEDESIA 718



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 137/497 (27%), Positives = 255/497 (51%), Gaps = 24/497 (4%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSPLVDLYMRMGPSVRALDLFDE 170
            +SSVL +C +    +EG Q+H  +++     N +++ + LV +Y + G  V A  LFD 
Sbjct: 116 AYSSVLELCGSKKALSEGQQVHAHMITSNALFNSVFLSTRLVFMYGKCGCLVDAEKLFDG 175

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE- 229
           +P + + TWN M+ A+     P   L +Y +M+  G+  +  +F  +++ C  G+L D  
Sbjct: 176 MPHKTIFTWNAMIGAYVTNGEPLGSLELYREMRVSGIPLDACTFPCILKAC--GLLKDRR 233

Query: 230 -GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSI 287
            G ++H   IK G+V + +FVAN++V  Y+ C  L  A++ FD +P  +DV+SWNS++S 
Sbjct: 234 CGAEVHGLAIKEGYVSI-VFVANSIVGMYTKCNDLNGARQLFDRMPEKEDVVSWNSMISA 292

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+      +AL LF  MQ     P+  +FV  L     +  +  G  IH  V K  + + 
Sbjct: 293 YSSNGQSIEALRLFGEMQKASLAPNTYTFVAALQACEDSSFIKQGMFIHATVLKSSY-YI 351

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V V +AL  MY +   +  +  +F +         NS+++  + +G   +A++ +  M 
Sbjct: 352 NVFVANALIAMYARFGKMGEAANIFYNMDDWDTISWNSMLSGFVQNGLYHEALQFYHEMR 411

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           D G   D V + + + A   + S N  +   +H  A+K+G +S++ V  SL+D Y++   
Sbjct: 412 DAGQKPDLVAVISIIAA--SARSGNTLNGMQIHAYAMKNGLDSDLQVGNSLVDMYAKFCS 469

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           ++    +F+K+P  +VV +T+I+ G+++NG    AL++   +   G+  D +    +L  
Sbjct: 470 MKYMDCIFDKMPDKDVVSWTTIIAGHAQNGSHSRALELFREVQLEGIDLDVMMISSILLA 529

Query: 528 CNHSGMVKEGQLVFNSMKSVYGID-----ADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
           C+       G  + +S+K ++        +D    + ++D+ G  G +D A  + +    
Sbjct: 530 CS-------GLKLISSVKEIHSYIIRKGLSDLVLQNGIVDVYGECGNVDYAARMFELIE- 581

Query: 583 GGDCMMWSSLLRSCRVH 599
             D + W+S++ SC VH
Sbjct: 582 FKDVVSWTSMI-SCYVH 597



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 109/474 (22%), Positives = 221/474 (46%), Gaps = 21/474 (4%)

Query: 132 IHCRVLSLGFGLNLYI-GSPLVDLYMRMGPSVRALDL-----FDELPERNLATWNLMLRA 185
           I  + ++L   L  Y+  +P+   Y+   P ++ +         + P + + T +L  R 
Sbjct: 28  IKNKAITLPMRLRYYVMAAPIPSFYLNCHPVLKKIHQNPPLKISKFPLKPVETPSL--RE 85

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLS----FCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
            C+    +E  +    + A    P+  S    +  ++  C     L EG+Q+H+H+I   
Sbjct: 86  ICKRGSVNEAFQSLTDLFANQ-SPSQFSLDEAYSSVLELCGSKKALSEGQQVHAHMITSN 144

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  ++F++  LV  Y  CG L++A+K FD +P   + +WN+++  Y        +LEL+
Sbjct: 145 ALFNSVFLSTRLVFMYGKCGCLVDAEKLFDGMPHKTIFTWNAMIGAYVTNGEPLGSLELY 204

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             M++        +F   L       +   G ++HG   K G+    V V +++  MY K
Sbjct: 205 REMRVSGIPLDACTFPCILKACGLLKDRRCGAEVHGLAIKEGYV-SIVFVANSIVGMYTK 263

Query: 362 CNVIESSVAVFESAPGRS-LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           CN +  +  +F+  P +  +   NS++++   +G   +A+ +FG M    +  +  T   
Sbjct: 264 CNDLNGARQLFDRMPEKEDVVSWNSMISAYSSNGQSIEALRLFGEMQKASLAPNTYTFVA 323

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L+A   S+    G    +H   +KS +  N+ V+ +L+  Y+R G +  +  +F  +  
Sbjct: 324 ALQACEDSSFIKQG--MFIHATVLKSSYYINVFVANALIAMYARFGKMGEAANIFYNMDD 381

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QL 539
            + + + S+++G+ +NG+  EAL     M   G  PD V  + ++A    SG    G Q+
Sbjct: 382 WDTISWNSMLSGFVQNGLYHEALQFYHEMRDAGQKPDLVAVISIIAASARSGNTLNGMQI 441

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
              +MK+  G+D+D Q  + ++DM  +   +   + +  + P   D + W++++
Sbjct: 442 HAYAMKN--GLDSDLQVGNSLVDMYAKFCSMKYMDCIFDKMP-DKDVVSWTTII 492


>gi|449519412|ref|XP_004166729.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Cucumis sativus]
          Length = 781

 Score =  303 bits (776), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 189/623 (30%), Positives = 331/623 (53%), Gaps = 12/623 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I  SN  ++ + KSG L  A  +F  +   D+V++N ++SG   F   + AL     M 
Sbjct: 107 HITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSG---FEKSENALSFALRMN 163

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            +G+K  + T+++ LS C +   +  G Q+H   L  GF  ++++G+ LV +Y R    V
Sbjct: 164 LNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKGDVFVGNALVTMYSRWEHLV 223

Query: 163 RALDLFDELPERNLATWNLMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A  +FDE+P R+  +W+ M+  +  E     + + ++ +M  EGV+ + +     +  C
Sbjct: 224 DARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQMVREGVKFDNVPITGALSVC 283

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                L+ GKQ+H   +K G  + +  V N L+  YS C  + +AK  F+ I   +VISW
Sbjct: 284 GHERNLELGKQIHCLAVKTGH-ETHTSVGNVLISTYSKCEIIEDAKAVFELINDRNVISW 342

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +++S+Y +      A+ LF +M+L    P+  +F+  L+  +    V  G  +HG   K
Sbjct: 343 TTMISLYEE-----GAVSLFNKMRLDGVYPNDVTFIGLLHAITIRNMVEQGLMVHGLCIK 397

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             F    + V ++L  MY K   ++ +  VF   P R +   N+L++    +   ++A+E
Sbjct: 398 ADFV-SELTVGNSLITMYAKFEFMQDASRVFIELPYREIISWNALISGYAQNALCQEALE 456

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            F + + E    +E T  + L A+S     +L   +  H   IK G   +  +S +L+D 
Sbjct: 457 AFLYAIME-YKPNEYTFGSVLNAISAGEDISLKHGQRCHSHLIKVGLNVDPIISGALLDM 515

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++ G I+ S +VF +    +   +T++++GY+++G     + + E M +  + PD V F
Sbjct: 516 YAKRGSIQESQRVFNETSKQSQFAWTALISGYAQHGDYESVIKLFEEMEKERIKPDAVIF 575

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L VL  C+ + MV  G+  FN M   + I+ + +HYSCM+DMLGRAG L++AEE+L + P
Sbjct: 576 LSVLTACSRNRMVDMGRQFFNMMIKDHMIEPEGEHYSCMVDMLGRAGRLEEAEEILARIP 635

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
           GG       SLL +CR HGN  +  R+AN LM+ EP++   Y  +SN Y++ G++E   +
Sbjct: 636 GGPGVSALQSLLGACRTHGNVEMAERIANDLMKKEPLESGPYVLMSNLYAQKGDWEKVAK 695

Query: 642 IRETALARKLTRDIGHSLIEVNS 664
           +R+    R + ++IG S ++V +
Sbjct: 696 VRKEMRERGVMKEIGFSWVDVGN 718



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 149/550 (27%), Positives = 271/550 (49%), Gaps = 40/550 (7%)

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           LFD+ P  +  ++N ++          Q+L  +      G+  +A  F+ VL++ +  GF
Sbjct: 29  LFDQSPPPNAASFNRVLLNYLPRDGAFQSLRFFKNNFRWGLDGNADEFTLVLALKACCGF 88

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
              G QIH  V+S GF  ++ + + L+++Y + G   RA  +F  L + ++ +WN +L  
Sbjct: 89  PKLGRQIHGFVISSGFVSHITVSNSLMNMYCKSGQLERAFSVFQNLHDPDIVSWNTILSG 148

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           F    + +  L    +M   GV+ + +++   +  C  G     G QLH+  +K G+   
Sbjct: 149 F---EKSENALSFALRMNLNGVKFDSVTYTTALSFCLDGEEFLFGWQLHTLALKCGFKG- 204

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA-DYDLIFDALELFFRM 304
           ++FV NALV  YS    L++A+K FD +P  D +SW+++++ YA + D    A+ +F +M
Sbjct: 205 DVFVGNALVTMYSRWEHLVDARKVFDEMPSRDRVSWSAMITGYAQEGDNGLQAILVFVQM 264

Query: 305 QLCRKRPSIRSFVEF--------LNFASRTGNVYFGKQIHGYVTKLGFD-HGSVHVQSAL 355
                   +R  V+F        L+      N+  GKQIH    K G + H S  V + L
Sbjct: 265 --------VREGVKFDNVPITGALSVCGHERNLELGKQIHCLAVKTGHETHTS--VGNVL 314

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
              Y KC +IE + AVFE    R++    + M SL   G    AV +F  M  +G+  ++
Sbjct: 315 ISTYSKCEIIEDAKAVFELINDRNVISWTT-MISLYEEG----AVSLFNKMRLDGVYPND 369

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VT    L A+++      G   ++H   IK+ F S + V  SL+  Y++   ++ + +VF
Sbjct: 370 VTFIGLLHAITIRNMVEQG--LMVHGLCIKADFVSELTVGNSLITMYAKFEFMQDASRVF 427

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL----AGCNHS 531
            ++P   ++ + ++++GY++N + +EAL+     I     P++ TF  VL    AG + S
Sbjct: 428 IELPYREIISWNALISGYAQNALCQEALEAFLYAIME-YKPNEYTFGSVLNAISAGEDIS 486

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
             +K GQ   + +  V G++ D      ++DM  + G + +++ +  +T        W++
Sbjct: 487 --LKHGQRCHSHLIKV-GLNVDPIISGALLDMYAKRGSIQESQRVFNETSKQSQ-FAWTA 542

Query: 592 LLRSCRVHGN 601
           L+     HG+
Sbjct: 543 LISGYAQHGD 552


>gi|297744484|emb|CBI37746.3| unnamed protein product [Vitis vinifera]
          Length = 2090

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 186/623 (29%), Positives = 331/623 (53%), Gaps = 14/623 (2%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           + N  +D ++K+G L+SA  +FD M +RD V++N++I G        + L+ + +     
Sbjct: 72  TGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIA 131

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
            + + ST    +  C + G   EG+++H  ++  GF     + + L+ +Y       RA 
Sbjct: 132 FEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAE 190

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIG 224
           +LFDE+ ER++ +W++M+  + +       L+++ +M +   +E +G++   +++ C+  
Sbjct: 191 ELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANT 250

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             +  G+ +H  VI  G +D ++FV N+++D YS C     A K+F+ +P  + +SWNSI
Sbjct: 251 GDISMGRSVHGVVICRG-LDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSI 309

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S     +   +AL LF+ M     R    + V  L       + +  K IH  V + G+
Sbjct: 310 ISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGY 369

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +     + S L D Y KC++IE +  +F+    +     ++++    H G   +A+ +F 
Sbjct: 370 ELNEFVINS-LIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQ 428

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M       + VT+ + L+A SVSA  +L   +  H  AI+ G  + +AV  +++D Y++
Sbjct: 429 EMNQAQEKPNGVTILSLLEAFSVSA--DLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAK 486

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I LS + F++IP  N+V + +++     NG+ R+AL +L  M   GL P+ VT L V
Sbjct: 487 CGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSV 546

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--- 581
           L+ C+H G+V+EG   F +M   +G++   +HYSCM+DML RAG L+ A  L+++ P   
Sbjct: 547 LSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERM 606

Query: 582 --GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
             G G   +W +LL +CR  GN  +G   A  ++ELEP   A Y   S+ Y+  G +  +
Sbjct: 607 RDGAG---LWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADA 663

Query: 640 MQIRETALARKLTRDIGHSLIEV 662
            ++R    AR +    G+SL+ V
Sbjct: 664 ARMRWLVKARGVRVVAGYSLVHV 686



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 128/481 (26%), Positives = 240/481 (49%), Gaps = 17/481 (3%)

Query: 140 GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY 199
           GF      G+ ++D YM+ G    AL +FD +  R+  +WN+M+         D+ L  +
Sbjct: 65  GFDSLTSTGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWF 124

Query: 200 NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA 259
            + +    EPN  +    +  C     ++EG ++H ++I+ G++D+   V N+L+  Y A
Sbjct: 125 RQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPS-VQNSLLSMY-A 182

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR----S 315
              +  A++ FD +   DVISW+ ++  Y        AL+LF  M       SI     +
Sbjct: 183 DNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMT---SNASIELDGIT 239

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
            V  L   + TG++  G+ +HG V   G D+  + V +++ DMY KC+  ES+   F   
Sbjct: 240 MVSVLKACANTGDISMGRSVHGVVICRGLDY-DLFVGNSIIDMYSKCDDHESAFKAFNEM 298

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           P R+    NS+++ L+ +    +A+ +F  M   G   DEVTL   L+  S     +   
Sbjct: 299 PCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQ--SCKYFVDPFQ 356

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
           C+ +H   I+ G+E N  V  SL+DAYS+C  IEL+ ++F+++ + + V +++++ G++ 
Sbjct: 357 CKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNH 416

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
            G   EA+ + + M Q    P+ VT L +L   + S  +K  +   + +    G+ A+  
Sbjct: 417 CGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWA-HGIAIRRGLAAEVA 475

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
             + ++DM  + G +  + +   Q P   + + W +++ +C ++G   + R    +L E+
Sbjct: 476 VGTAILDMYAKCGEIGLSRKAFDQIP-EKNIVSWGAMIAACGMNG---LARDALALLSEM 531

Query: 616 E 616
           +
Sbjct: 532 K 532



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 223/473 (47%), Gaps = 4/473 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P V T+      C S+  +   L +  Y   +  L+I S   ++        +  A++LF
Sbjct: 134 PNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELF 193

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAGFY 126
           DEM  RD+++++++I G  +    K AL L+ EM S+  I+    T  SVL  C+N G  
Sbjct: 194 DEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDI 253

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           + G  +H  V+  G   +L++G+ ++D+Y +      A   F+E+P RN  +WN ++   
Sbjct: 254 SMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGL 313

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
               +  E L ++  M   G   + ++   +++ C   +   + K +HS VI+ G+ ++N
Sbjct: 314 VRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGY-ELN 372

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
            FV N+L+D YS C  +  A K FD +   D +SW+++++ +       +A+ LF  M  
Sbjct: 373 EFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQ 432

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
            +++P+  + +  L   S + ++   K  HG   + G     V V +A+ DMY KC  I 
Sbjct: 433 AQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGL-AAEVAVGTAILDMYAKCGEIG 491

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            S   F+  P +++    +++ +   +G  +DA+ +   M   G+  + VT  + L A S
Sbjct: 492 LSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACS 551

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
                  G            G E  +     ++D  SR G +  +  + EK+P
Sbjct: 552 HGGLVEEG-LSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMP 603


>gi|356566136|ref|XP_003551291.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 733

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 182/641 (28%), Positives = 330/641 (51%), Gaps = 13/641 (2%)

Query: 31  LLDSYCQPNPQLNIYSS------NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           L+    Q  P  N YS       N  +   VK G L  A+ +FD+M  RD +++  LI+G
Sbjct: 38  LIQQPIQEQPAENAYSVHNMLELNSELKQLVKQGQLCKARYMFDKMTHRDEISWTTLIAG 97

Query: 85  CGKFRHPKQALYLYDEMVSH-GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL 143
                   +AL L+  M  H G +      S  L  C+       G  +H   +  G   
Sbjct: 98  YVNASDSYEALILFSNMWVHPGPQRDQFMISVALKACALGVNICFGELLHGFSVKSGLIH 157

Query: 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           ++++ S L+D+YM++G   +   +F+++  RN+ +W  ++          E L  +++M 
Sbjct: 158 SVFVSSALIDMYMKVGKIEQGCRVFEKMMTRNVVSWTAIIAGLVHAGYNMEGLLYFSEMW 217

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
              V  +  +F   ++  +   LL  GK +H+  IK G+ D + FV N L   Y+ CG  
Sbjct: 218 RSKVGYDSHTFAIALKASADSSLLHHGKAIHTQTIKQGF-DESSFVINTLATMYNKCGKP 276

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
               + F+ + + DV+SW +++S Y        A+E F RM+     P+  +F   ++  
Sbjct: 277 DYVMRLFEKMRMPDVVSWTTLISTYVQMGEEEHAVEAFKRMRKSYVSPNKYTFAAVISSC 336

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +      +G+QIHG+V +LG  + ++ V +++  +Y KC +++S+  VF     + +   
Sbjct: 337 ANLAAAKWGEQIHGHVLRLGLVN-ALSVANSIITLYSKCGLLKSASLVFHGITRKDIISW 395

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCC 442
           +++++     G  K+A +   +M  EG   +E  LS+ L   SV  S A L   + +H  
Sbjct: 396 STIISVYSQGGYAKEAFDYLSWMRREGPKPNEFALSSVL---SVCGSMALLEQGKQVHAH 452

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
            +  G +    V  +++  YS+CG ++ + ++F  +   +++ +T+++NGY+ +G  +EA
Sbjct: 453 LLCIGIDHEAMVHSAIISMYSKCGSVQEASKIFNGMKINDIISWTAMINGYAEHGYSQEA 512

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           +++ E +   GL PD V F+ VL  CNH+GMV  G   F  M +VY I   ++HY C+ID
Sbjct: 513 INLFEKISSVGLKPDYVMFIGVLTACNHAGMVDLGFYYFMLMTNVYRISPSKEHYGCLID 572

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622
           +L RAG L +AE +++  P   D ++WS+LLR+CRVHG+   GR  A  L++L+P     
Sbjct: 573 LLCRAGRLSEAEHIIRSMPFHTDDVVWSTLLRACRVHGDVDRGRWTAEQLLQLDPNSAGT 632

Query: 623 YSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +  ++N Y+  G ++ +  IR+   ++ + ++ G S + VN
Sbjct: 633 HITLANIYAAKGRWKEAAHIRKLMKSKGVIKERGWSWVNVN 673


>gi|449453750|ref|XP_004144619.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
 gi|449506934|ref|XP_004162888.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Cucumis sativus]
          Length = 1067

 Score =  303 bits (775), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 184/629 (29%), Positives = 343/629 (54%), Gaps = 18/629 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  +  +  F K+G +  AK +F +M  R++V+ N LI G  + +  ++A+ L+ EM 
Sbjct: 318 DLYVGSALVSGFAKAGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEM- 376

Query: 103 SHGIKESASTFSSVLS------VCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLY 155
              ++ + +++  +L+      V  N     +G ++H  ++  G     + IG+ L+++Y
Sbjct: 377 KDSVELNPNSYMIILTAFPEFHVLENGK--RKGSEVHAFLIRSGLLNAQIAIGNGLINMY 434

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            + G    A  +F  +  ++  TWN M+    +  +  E ++ + +M+   + P+  +  
Sbjct: 435 AKCGAINDACVVFRLMDNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMI 494

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
             +  C+    +  G+QLH   +KLG +D+++ V+NAL+  Y  CG + E +K+F  +  
Sbjct: 495 SALSSCASLGWISVGEQLHCEGLKLG-LDLDVSVSNALLALYGECGYVKECQKAFSLMLD 553

Query: 276 DDVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
            D +SWNS++   AD +  + +A+E F  M      P+  +F+  L   S       GKQ
Sbjct: 554 YDHVSWNSLIGALADSEPSMLEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQ 613

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHS 393
           IH  V K      +  +++AL   YGKC  +     +F     R  E   NS+++  +H+
Sbjct: 614 IHALVLKRNVAADTA-IENALLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMISGYIHN 672

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
             +  A++M  FM+ +G  LD  T +T L A +  A+   G    +H C++++  ES+I 
Sbjct: 673 ELLPKAMDMVWFMMQKGQRLDGFTFATVLSACATVATLERG--MEVHGCSVRACLESDIV 730

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           +  +L+D Y++CG I+ + + FE +P+ N+  + S+++GY+R+G G ++LD+   M  +G
Sbjct: 731 IGSALVDMYAKCGRIDYASRFFEMMPARNLYSWNSMISGYARHGHGTKSLDLFAQMKLQG 790

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
            +PD VTF+ VL+ C+H+G+V EG   F+SM  +YG+    +H+SCM+D+LGR G L+K 
Sbjct: 791 PLPDHVTFVGVLSACSHAGLVNEGFSHFDSMSEIYGLAPRMEHFSCMVDLLGRVGELNKM 850

Query: 574 EELLQQTPGGGDCMMWSSLLRS-CRVHG-NEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           E+ L Q P   + ++W ++L + CR +G N  +GRR A +L+E+EP +   Y  +SN Y+
Sbjct: 851 EDFLNQMPVKPNVLIWRTVLGACCRANGRNTALGRRAAEMLLEMEPTNAVNYILLSNMYA 910

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLI 660
             G+++   + R       + ++ G S +
Sbjct: 911 SGGKWDDVAKTRVAMRKAFVKKEAGCSWV 939



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 159/648 (24%), Positives = 317/648 (48%), Gaps = 44/648 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  I+ + + G L S +K+FDEMP R++V+++ LISG  + R P +A  L+ +MV
Sbjct: 107 DLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNRMPNEACELFRKMV 166

Query: 103 SHGIKESASTFSSVLSVCSNAGFY--TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR-MG 159
           S G   +   F SV+  C   G Y    G+QIH  +    +  ++   + L+ +Y   +G
Sbjct: 167 SDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVNDVTASNVLISMYGNALG 226

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE----GVEPNGLSFC 215
               A   FD +  RNL + N M+  +C+         +++ M+ E    G++PN  +F 
Sbjct: 227 MVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKEVMGDGLKPNEYTFG 286

Query: 216 YMVRG-CSI---GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            ++   CS+   G++L E  QL + V K G++  +++V +ALV  ++  GS+  AK  F 
Sbjct: 287 SLISATCSLANSGLVLLE--QLLTRVEKSGFLH-DLYVGSALVSGFAKAGSIGYAKNIFQ 343

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ-LCRKRPS-----IRSFVEF--LNFA 323
            +   +V+S N ++          +A+ELF  M+      P+     + +F EF  L   
Sbjct: 344 KMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDSVELNPNSYMIILTAFPEFHVLENG 403

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
            R G+     ++H ++ + G  +  + + + L +MY KC  I  +  VF     +     
Sbjct: 404 KRKGS-----EVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLMDNKDSVTW 458

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LH 440
           NS++T L  +    +AV+ F  M    +     T+ + L     S+ A+LG   +   LH
Sbjct: 459 NSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISAL-----SSCASLGWISVGEQLH 513

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
           C  +K G + +++VS +L+  Y  CG+++   + F  +   + V + S++   + +    
Sbjct: 514 CEGLKLGLDLDVSVSNALLALYGECGYVKECQKAFSLMLDYDHVSWNSLIGALADSEPSM 573

Query: 501 -EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            EA++   VM++ G  P++VTF+ +LA  +   + + G+ + +++     + AD    + 
Sbjct: 574 LEAVESFLVMMRAGWDPNRVTFITILAAVSSLSLHELGKQI-HALVLKRNVAADTAIENA 632

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR---VANILMELE 616
           ++   G+ G +   E +  +     D + W+S++ S  +H NE++ +    V  ++ + +
Sbjct: 633 LLACYGKCGDMGYCENIFSRMSDRQDEVSWNSMI-SGYIH-NELLPKAMDMVWFMMQKGQ 690

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
            +D   ++ V +  + +   E  M++   ++   L  D  IG +L+++
Sbjct: 691 RLDGFTFATVLSACATVATLERGMEVHGCSVRACLESDIVIGSALVDM 738



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/458 (25%), Positives = 221/458 (48%), Gaps = 18/458 (3%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           ++H ++   GF  +L++ + L+++Y R+G       +FDE+P RNL +W+ ++  +    
Sbjct: 94  ELHLQLFKNGFVNDLFLCNTLINIYARVGDLGSGRKVFDEMPLRNLVSWSCLISGYTRNR 153

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGML-LDEGKQLHSHVIKLGWVDVNIF 248
            P+E   ++ KM ++G  PN  +F  ++R C   G   L  G Q+H  + K  +V+ ++ 
Sbjct: 154 MPNEACELFRKMVSDGFMPNHYAFGSVIRACQECGEYGLKFGMQIHGLMSKTQYVN-DVT 212

Query: 249 VANALVDFY-SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            +N L+  Y +A G +  A+++FD I   +++S NS++S+Y        A ++F  MQ  
Sbjct: 213 ASNVLISMYGNALGMVDYARRAFDSIWPRNLVSLNSMISVYCQRGDAVSAFDIFSTMQKE 272

Query: 308 RK----RPSIRSFVEFLNFASRTGN--VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
                 +P+  +F   ++      N  +   +Q+   V K GF H  ++V SAL   + K
Sbjct: 273 VMGDGLKPNEYTFGSLISATCSLANSGLVLLEQLLTRVEKSGFLH-DLYVGSALVSGFAK 331

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
              I  +  +F+    R++   N L+  L+     ++AVE+F  M D  + L+  +    
Sbjct: 332 AGSIGYAKNIFQKMSYRNVVSLNGLIIGLVRQKRGEEAVELFMEMKDS-VELNPNSYMII 390

Query: 422 LKALSVSASANLGSCR--LLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           L A         G  +   +H   I+SG   + IA+   L++ Y++CG I  +  VF  +
Sbjct: 391 LTAFPEFHVLENGKRKGSEVHAFLIRSGLLNAQIAIGNGLINMYAKCGAINDACVVFRLM 450

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG- 537
            + + V + S++ G  +N    EA+   + M +  L P   T +  L+ C   G +  G 
Sbjct: 451 DNKDSVTWNSMITGLDQNKQFLEAVKTFQEMRRTELYPSNFTMISALSSCASLGWISVGE 510

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           QL    +K   G+D D    + ++ + G  G + + ++
Sbjct: 511 QLHCEGLK--LGLDLDVSVSNALLALYGECGYVKECQK 546


>gi|225428280|ref|XP_002279627.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Vitis vinifera]
          Length = 742

 Score =  302 bits (774), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 186/623 (29%), Positives = 331/623 (53%), Gaps = 14/623 (2%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           + N  +D ++K+G L+SA  +FD M +RD V++N++I G        + L+ + +     
Sbjct: 86  TGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVIA 145

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
            + + ST    +  C + G   EG+++H  ++  GF     + + L+ +Y       RA 
Sbjct: 146 FEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAE 204

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIG 224
           +LFDE+ ER++ +W++M+  + +       L+++ +M +   +E +G++   +++ C+  
Sbjct: 205 ELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANT 264

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             +  G+ +H  VI  G +D ++FV N+++D YS C     A K+F+ +P  + +SWNSI
Sbjct: 265 GDISMGRSVHGVVICRG-LDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSI 323

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S     +   +AL LF+ M     R    + V  L       + +  K IH  V + G+
Sbjct: 324 ISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGY 383

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +     + S L D Y KC++IE +  +F+    +     ++++    H G   +A+ +F 
Sbjct: 384 ELNEFVINS-LIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQ 442

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M       + VT+ + L+A SVSA  +L   +  H  AI+ G  + +AV  +++D Y++
Sbjct: 443 EMNQAQEKPNGVTILSLLEAFSVSA--DLKRSKWAHGIAIRRGLAAEVAVGTAILDMYAK 500

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I LS + F++IP  N+V + +++     NG+ R+AL +L  M   GL P+ VT L V
Sbjct: 501 CGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSV 560

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--- 581
           L+ C+H G+V+EG   F +M   +G++   +HYSCM+DML RAG L+ A  L+++ P   
Sbjct: 561 LSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMPERM 620

Query: 582 --GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
             G G   +W +LL +CR  GN  +G   A  ++ELEP   A Y   S+ Y+  G +  +
Sbjct: 621 RDGAG---LWGALLSACRSSGNSRLGAGAAFRVLELEPQSSAGYFLASSMYAASGLWADA 677

Query: 640 MQIRETALARKLTRDIGHSLIEV 662
            ++R    AR +    G+SL+ V
Sbjct: 678 ARMRWLVKARGVRVVAGYSLVHV 700



 Score =  192 bits (489), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 142/535 (26%), Positives = 262/535 (48%), Gaps = 19/535 (3%)

Query: 87  KFRHPKQALYLYDEMVSHGIKESASTF-SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
           K+    +A   Y +M   G + +  T   S+L  CS+      G  IH  +L  GF    
Sbjct: 26  KWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLPV-RHGKSIHASLLKQGFDSLT 84

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
             G+ ++D YM+ G    AL +FD +  R+  +WN+M+         D+ L  + + +  
Sbjct: 85  STGNSVLDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDKGLWWFRQARVI 144

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
             EPN  +    +  C     ++EG ++H ++I+ G++D+   V N+L+  Y A   +  
Sbjct: 145 AFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIP-SVQNSLLSMY-ADNDMER 202

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR----SFVEFLN 321
           A++ FD +   DVISW+ ++  Y        AL+LF  M       SI     + V  L 
Sbjct: 203 AEELFDEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMT---SNASIELDGITMVSVLK 259

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
             + TG++  G+ +HG V   G D+  + V +++ DMY KC+  ES+   F   P R+  
Sbjct: 260 ACANTGDISMGRSVHGVVICRGLDY-DLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTV 318

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             NS+++ L+ +    +A+ +F  M   G   DEVTL   L+  S     +   C+ +H 
Sbjct: 319 SWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQ--SCKYFVDPFQCKFIHS 376

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             I+ G+E N  V  SL+DAYS+C  IEL+ ++F+++ + + V +++++ G++  G   E
Sbjct: 377 IVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDE 436

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A+ + + M Q    P+ VT L +L   + S  +K  +   + +    G+ A+    + ++
Sbjct: 437 AIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWA-HGIAIRRGLAAEVAVGTAIL 495

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           DM  + G +  + +   Q P   + + W +++ +C ++G   + R    +L E++
Sbjct: 496 DMYAKCGEIGLSRKAFDQIP-EKNIVSWGAMIAACGMNG---LARDALALLSEMK 546



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 121/473 (25%), Positives = 223/473 (47%), Gaps = 4/473 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P V T+      C S+  +   L +  Y   +  L+I S   ++        +  A++LF
Sbjct: 148 PNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELF 207

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAGFY 126
           DEM  RD+++++++I G  +    K AL L+ EM S+  I+    T  SVL  C+N G  
Sbjct: 208 DEMCERDVISWSVMIGGYVQTGEAKMALQLFLEMTSNASIELDGITMVSVLKACANTGDI 267

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           + G  +H  V+  G   +L++G+ ++D+Y +      A   F+E+P RN  +WN ++   
Sbjct: 268 SMGRSVHGVVICRGLDYDLFVGNSIIDMYSKCDDHESAFKAFNEMPCRNTVSWNSIISGL 327

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
               +  E L ++  M   G   + ++   +++ C   +   + K +HS VI+ G+ ++N
Sbjct: 328 VRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGY-ELN 386

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
            FV N+L+D YS C  +  A K FD +   D +SW+++++ +       +A+ LF  M  
Sbjct: 387 EFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQ 446

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
            +++P+  + +  L   S + ++   K  HG   + G     V V +A+ DMY KC  I 
Sbjct: 447 AQEKPNGVTILSLLEAFSVSADLKRSKWAHGIAIRRGL-AAEVAVGTAILDMYAKCGEIG 505

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            S   F+  P +++    +++ +   +G  +DA+ +   M   G+  + VT  + L A S
Sbjct: 506 LSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNVVTTLSVLSACS 565

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
                  G            G E  +     ++D  SR G +  +  + EK+P
Sbjct: 566 HGGLVEEG-LSFFENMVQDHGVEPGLEHYSCMVDMLSRAGKLNSAMNLIEKMP 617


>gi|222617563|gb|EEE53695.1| hypothetical protein OsJ_00010 [Oryza sativa Japonica Group]
          Length = 1008

 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 178/626 (28%), Positives = 322/626 (51%), Gaps = 29/626 (4%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  NI+S N  +  +  SG L +A+ LF   P R+  T+ +++           AL L+ 
Sbjct: 284 PHKNIFSLNLILSAYSSSGDLPAAQHLFLSSPHRNATTWTIMMRAHAAAGRTSDALSLFR 343

Query: 100 EMVSHGIKESASTFSSVLSV--CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
            M+  G+     T ++VL++  C+          +H   +  G   ++++ + L+D Y +
Sbjct: 344 AMLGEGVIPDRVTVTTVLNLPGCTVP-------SLHPFAIKFGLDTHVFVCNTLLDAYCK 396

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +F E+ +++  T+N M+    +     + L+++  M+  G   + L     
Sbjct: 397 HGLLAAARRVFLEMHDKDAVTYNAMMMGCSKEGLHTQALQLFAAMRRAGYSRHPLHLLQ- 455

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
                           +SH        +N+FV N+L+DFYS C  L + ++ FD +P  D
Sbjct: 456 ----------------YSHSRSRSTSVLNVFVNNSLLDFYSKCDCLDDMRRLFDEMPERD 499

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +S+N I++ YA        L LF  MQ       +  +   L+ A    +V+ GKQIH 
Sbjct: 500 NVSYNVIIAAYAWNQCAATVLRLFREMQKLGFDRQVLPYATMLSVAGSLPDVHIGKQIHA 559

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +  LG     + + +AL DMY KC +++++ + F +   +S     +L+T  + +G  +
Sbjct: 560 QLVLLGLASEDL-LGNALIDMYSKCGMLDAAKSNFSNRSEKSAISWTALITGYVQNGQHE 618

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+++F  M   G+  D  T S+ +KA S  A   LG  R LH   I+SG++S++     
Sbjct: 619 EALQLFSDMRRAGLRPDRATFSSIIKASSSLAMIGLG--RQLHSYLIRSGYKSSVFSGSV 676

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++CG ++ + + F+++P  N + + ++++ Y+  G  + A+ M E M+  G  PD
Sbjct: 677 LVDMYAKCGCLDEALRTFDEMPERNSISWNAVISAYAHYGEAKNAIKMFEGMLHCGFNPD 736

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            VTFL VLA C+H+G+  E    F+ MK  Y I   ++HY+C+ID LGR G   + +++L
Sbjct: 737 SVTFLSVLAACSHNGLADECMKYFHLMKHQYSISPWKEHYACVIDTLGRVGCFSQVQKML 796

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            + P   D ++W+S+L SCR+HGN+ + R  A+ L  +EP D   Y  +SN Y+  G++E
Sbjct: 797 VEMPFKADPIIWTSILHSCRIHGNQELARVAADKLFGMEPTDATPYVILSNIYARAGQWE 856

Query: 638 VSMQIRETALARKLTRDIGHSLIEVN 663
            +  +++    R + ++ G+S +E+ 
Sbjct: 857 DAACVKKIMRDRGVRKESGYSWVEIK 882


>gi|78499697|gb|ABB45851.1| hypothetical protein [Eutrema halophilum]
          Length = 697

 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 169/633 (26%), Positives = 330/633 (52%), Gaps = 11/633 (1%)

Query: 35  YCQPNPQLNIYS----SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           +C  + + +++S    ++  + D + SG L  A+++FD+MP RD+ ++  ++ G      
Sbjct: 15  FCTASIEKSMHSNHVDTHSQLQDLIDSGKLRVARQVFDKMPRRDIKSWTAIMKGYVAATK 74

Query: 91  PKQALYLYDEMVSHGIKESASTF--SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
           P++AL L+  M    +  S  T+  S  L  C  +     G  +H          ++++G
Sbjct: 75  PEEALILFSAMRVDPLGVSGDTYVLSVALKACGQSSNIAYGESLHAYAEKTFLLSSVFVG 134

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGV 207
           S L+D+YMR+G   ++  +F E+P RN  TW   +          E LR +++M + + +
Sbjct: 135 SALLDMYMRIGKIDKSCRVFAEMPFRNSVTWTAFITGLVHAGLHYEGLRYFSQMSRFKQL 194

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
             +  +F   ++ C+    +  G+++H+HVI  G+  + ++VAN+L   Y+ CG + +  
Sbjct: 195 SSDTFAFAIALKACADLRQVKYGREIHTHVIVKGFAAI-LWVANSLATMYTECGEMQDGL 253

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
           + F+ +   DV+ W S+++ Y        A+  F  M+  +  P+ ++F       +   
Sbjct: 254 RLFESMSERDVVLWTSLITAYIRIGQEEKAVNTFLLMRNSQVSPNEQTFASTFAACASLS 313

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
            + +G+Q+HG V  LG    S+ V +++  MY  C  ++S+  +F+    R +   ++++
Sbjct: 314 RLVWGEQLHGNVFSLGLGD-SLSVSNSMMKMYSTCAKLDSASVLFQGMRCRDIISWSTII 372

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
                +   ++  + F +M   G    +  L++ L    + A    G  R +H  A+  G
Sbjct: 373 GGYSQAAFGEECFKYFSWMRQAGPQPTDFALASLLSVSGIMAVLEQG--RQVHALALYLG 430

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            E N  +  +L++ YS+CG I  + +VFE+    ++V  T+++NGY+ +G   EA+D+ E
Sbjct: 431 LEQNPTIRSALINMYSKCGSIIEASKVFEEKDRTDIVSLTAMINGYAEHGKCEEAIDLFE 490

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
             ++    PD VTF+ VL  C+HSG +  G   FN M+  Y +   ++HY CM+D+L RA
Sbjct: 491 KSLKLSFRPDDVTFISVLTACSHSGQLDLGFQYFNLMQENYNMRPAKEHYGCMVDLLCRA 550

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G L+ AE+++ + P   D ++W++LLR+C+  G+   GRR A  ++EL+P  F     ++
Sbjct: 551 GRLNDAEKMINEMPWKKDDVVWTTLLRACKEKGDVERGRRAAQRILELDPTSFTTLVTLA 610

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           N +S  G ++ +  +R+   ++ + ++ G S I
Sbjct: 611 NIHSSTGNWKEAANVRKDMKSKGVIKEPGWSSI 643



 Score = 45.4 bits (106), Expect = 0.092,   Method: Compositional matrix adjust.
 Identities = 36/152 (23%), Positives = 64/152 (42%), Gaps = 3/152 (1%)

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           N G  R     +I+    SN   + S +      G + ++ QVF+K+P  ++  +T+IM 
Sbjct: 8   NGGRIRRFCTASIEKSMHSNHVDTHSQLQDLIDSGKLRVARQVFDKMPRRDIKSWTAIMK 67

Query: 492 GYSRNGMGREALDMLEVMI--QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           GY       EAL +   M     G+  D       L  C  S  +  G+ +    +  + 
Sbjct: 68  GYVAATKPEEALILFSAMRVDPLGVSGDTYVLSVALKACGQSSNIAYGESLHAYAEKTFL 127

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +     S ++DM  R G +DK+  +  + P
Sbjct: 128 LSSVFVG-SALLDMYMRIGKIDKSCRVFAEMP 158


>gi|449485624|ref|XP_004157227.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g57430, chloroplastic-like [Cucumis sativus]
          Length = 863

 Score =  302 bits (774), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 181/647 (27%), Positives = 345/647 (53%), Gaps = 18/647 (2%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM----PARDMVTYNLL 81
           ++  L++DS     P L  +S+   I  +V++G    A   + EM       +  T++ +
Sbjct: 100 VARKLVIDS---SEPDLVSWSA--LISGYVQNGRGEEALLTYYEMYLLGAKGNEFTFSSV 154

Query: 82  ISGCGKFRHPK-----QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRV 136
           + GC   R+ +       + L  EM+S GI  +  + S+VL+ C+       G+++H  +
Sbjct: 155 LKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGMKVHGYL 214

Query: 137 LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
           + LG+  + +  + L+D+Y + G    A+ +F E+P+ ++ +WN ++       + D  L
Sbjct: 215 IKLGYDSDPFSANALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLHEKNDLAL 274

Query: 197 RMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256
           ++  KM +  V P+  +    ++ C+   L+  G+QLHS ++K+  ++ + FV   L+D 
Sbjct: 275 KLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLGRQLHSALMKMD-MEPDSFVGVGLIDM 333

Query: 257 YSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF 316
           YS CG L +A+  FD +P  DVI WNSI+S Y++     +A+ LF  M       +  + 
Sbjct: 334 YSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTL 393

Query: 317 VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
              L   + +    F +Q+H    K G+ +   +V ++L D YGKC ++E +  VFE  P
Sbjct: 394 STILKSTAGSQANGFCEQVHTISIKSGYQYDG-YVANSLLDSYGKCCLLEDAAKVFEVCP 452

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
              L    S++T+    G  ++A++M+  M D  I  D    S+   A +  ++   G  
Sbjct: 453 AEDLVAYTSMITAYSQYGLGEEALKMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQG-- 510

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           + +H   +K G  S++    SL++ Y++CG I+ +  +F +I    +V +++++ G +++
Sbjct: 511 KQIHVHVLKCGLLSDVFAGNSLVNMYAKCGSIDDASCIFNEISWRGIVSWSAMIGGLAQH 570

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
           G GR+AL +   M++ G++P+ +T + VL+ CNH+G+V E +  F  M+ ++GI   ++H
Sbjct: 571 GHGRKALQLFYQMLKNGILPNHITLVSVLSACNHAGLVTEARRFFGLMEKLFGITPTQEH 630

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           Y+CM+D+LGR G LD+A  L+++ P      +W +LL + R+H N  +GR  A +L+ LE
Sbjct: 631 YACMVDILGRVGRLDEAMVLVKEMPFQASAAVWGALLGAARIHKNIELGRHAAEMLLTLE 690

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           P     +  ++N Y+  G ++   ++R +     + ++ G S IE+ 
Sbjct: 691 PEKSGTHILLANIYASTGMWDNVAKVRRSMKNSLVKKEPGMSWIELK 737



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 146/533 (27%), Positives = 261/533 (48%), Gaps = 60/533 (11%)

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           + G+ IH R++ L     L + + LV+LY +      A  L  +  E +L +W+ ++  +
Sbjct: 67  SSGMAIHARIIRL---GLLGLRNRLVNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGY 123

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL------------- 233
            +  R +E L  Y +M   G + N  +F  +++GCS+   L+ GKQ+             
Sbjct: 124 VQNGRGEEALLTYYEMYLLGAKGNEFTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTG 183

Query: 234 ---------------------------HSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
                                      H ++IKLG+ D + F ANAL+D Y+  G    A
Sbjct: 184 ISPNEFSLSTVLNACAGLEDENYGMKVHGYLIKLGY-DSDPFSANALLDMYAKSGCPEAA 242

Query: 267 KKSFDFIPVDDVISWNSIVS---IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
              F  IP  D++SWN++++   ++   DL   AL+L  +M   R  PS+ +    L   
Sbjct: 243 IAVFYEIPKPDIVSWNAVIAGCVLHEKNDL---ALKLLGKMGSYRVAPSMFTLSSALKAC 299

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +  G V  G+Q+H  + K+  +  S  V   L DMY KC +++ +  VF+  P + +   
Sbjct: 300 AAIGLVKLGRQLHSALMKMDMEPDSF-VGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVW 358

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           NS+++   + G   +A+ +F  M  EG+  ++ TLST LK  S + S   G C  +H  +
Sbjct: 359 NSIISGYSNCGYDIEAMSLFTNMYKEGLEFNQTTLSTILK--STAGSQANGFCEQVHTIS 416

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           IKSG++ +  V+ SL+D+Y +C  +E + +VFE  P+ ++V +TS++  YS+ G+G EAL
Sbjct: 417 IKSGYQYDGYVANSLLDSYGKCCLLEDAAKVFEVCPAEDLVAYTSMITAYSQYGLGEEAL 476

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMID 562
            M   M  R + PD   F  +   C +    ++G Q+  + +K   G+ +D    + +++
Sbjct: 477 KMYLRMQDRDIKPDAFIFSSLFNACANLSAYEQGKQIHVHVLKC--GLLSDVFAGNSLVN 534

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           M  + G +D A  +  +    G  + WS+++     HG+   GR+   +  ++
Sbjct: 535 MYAKCGSIDDASCIFNEISWRG-IVSWSAMIGGLAQHGH---GRKALQLFYQM 583



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 115/459 (25%), Positives = 203/459 (44%), Gaps = 62/459 (13%)

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           V+ YS C     A+K        D++SW++++S Y       +AL  ++ M L   + + 
Sbjct: 89  VNLYSKCQCFRVARKLVIDSSEPDLVSWSALISGYVQNGRGEEALLTYYEMYLLGAKGNE 148

Query: 314 RSFVEFLNFASRTGNVYFGKQI-------------------------------------- 335
            +F   L   S T N+  GKQI                                      
Sbjct: 149 FTFSSVLKGCSLTRNLELGKQIHRVALVTEMISTGISPNEFSLSTVLNACAGLEDENYGM 208

Query: 336 --HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS-LLH 392
             HGY+ KLG+D       +AL DMY K    E+++AVF   P   +   N+++   +LH
Sbjct: 209 KVHGYLIKLGYDSDPFSA-NALLDMYAKSGCPEAAIAVFYEIPKPDIVSWNAVIAGCVLH 267

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
             N   A+++ G M    +     TLS+ LKA +      LG  R LH   +K   E + 
Sbjct: 268 EKN-DLALKLLGKMGSYRVAPSMFTLSSALKACAAIGLVKLG--RQLHSALMKMDMEPDS 324

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V   L+D YS+CG ++ +  VF+ +P  +V+ + SI++GYS  G   EA+ +   M + 
Sbjct: 325 FVGVGLIDMYSKCGLLQDARMVFDLMPXKDVIVWNSIISGYSNCGYDIEAMSLFTNMYKE 384

Query: 513 GLIPDKVTFLCVL---AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
           GL  ++ T   +L   AG   +G  ++   +  S+KS Y  D      + ++D  G+  +
Sbjct: 385 GLEFNQTTLSTILKSTAGSQANGFCEQVHTI--SIKSGYQYDGYVA--NSLLDSYGKCCL 440

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA----VYSQ 625
           L+ A ++ +  P   D + ++S++ +   +G   +G     + + ++  D      ++S 
Sbjct: 441 LEDAAKVFEVCP-AEDLVAYTSMITAYSQYG---LGEEALKMYLRMQDRDIKPDAFIFSS 496

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDI--GHSLIEV 662
           + N  + +  +E   QI    L   L  D+  G+SL+ +
Sbjct: 497 LFNACANLSAYEQGKQIHVHVLKCGLLSDVFAGNSLVNM 535


>gi|297822535|ref|XP_002879150.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297324989|gb|EFH55409.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 872

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 178/616 (28%), Positives = 332/616 (53%), Gaps = 10/616 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K  +    + +FDEM  R++VT+  LISG  +    ++ L L+  M   G + ++
Sbjct: 139 VDTYMKGSNFKDGRNVFDEMKERNVVTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNS 198

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF++ L V +  G    G+Q+H  V+  G    + + + L++LY++ G   +A  LFD+
Sbjct: 199 FTFAAALGVLAEEGVGGRGLQVHTVVVKNGLDKTIPVSNSLINLYLKCGNVRKARILFDK 258

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
              +++ TWN M+  +       E L M+  M+   V  +  SF  +++ C+    L   
Sbjct: 259 TEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFT 318

Query: 231 KQLHSHVIKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIY 288
           +QLH  V+K G+V D NI    AL+  YS C ++++A + F     + +V+SW +++S +
Sbjct: 319 EQLHCSVVKYGFVFDQNI--RTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGF 376

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
              D   +A+ LF  M+    RP+  ++   L        V    ++H  V K  ++  S
Sbjct: 377 LQNDGKEEAVGLFSEMKRKGVRPNEFTYSVILTALP----VISPSEVHAQVVKTNYERSS 432

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             V +AL D Y K   ++ +  VF     + +   ++++     +G  + A+++F  +  
Sbjct: 433 T-VGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTK 491

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
            G+  +E T S+ L   + + +A++G  +  H  AIKS  +S++ VS +L+  Y++ GHI
Sbjct: 492 GGVKPNEFTFSSILNVCAAT-TASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHI 550

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           E + +VF++    ++V + S+++GY+++G   +ALD+ + M +R +  D VTF+ V A C
Sbjct: 551 ESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFKEMKKRKVKMDSVTFIGVFAAC 610

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
            H+G+V+EG+  F+ M     I   ++H SCM+D+  RAG L+KA +++   P      +
Sbjct: 611 THAGLVEEGEKYFDIMVRDCKIAPTKEHNSCMVDLYSRAGQLEKAMKVIDNMPNLAGSTI 670

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W ++L +CRVH    +GR  A  ++ + P D A Y  +SN Y+E G+++   ++R+    
Sbjct: 671 WRTILAACRVHKKTELGRLAAEKIIAMIPEDSAAYVLLSNMYAESGDWQERAKVRKLMNE 730

Query: 649 RKLTRDIGHSLIEVNS 664
           R + ++ G+S IEV +
Sbjct: 731 RNVKKEPGYSWIEVKN 746



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 153/551 (27%), Positives = 285/551 (51%), Gaps = 20/551 (3%)

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           S  L  A  LFD+ P RD  +Y  L+ G  +    ++A  L+  +   G++   S FSSV
Sbjct: 44  SSRLYYAHNLFDKSPDRDRESYTSLLFGFSRDGRTQEATRLFLNIQHLGMEMDCSIFSSV 103

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L V +       G Q+HC+ +  GF  ++ +G+ LVD YM+        ++FDE+ ERN+
Sbjct: 104 LKVSATLCDELFGRQLHCQCIKFGFLDDVSVGTSLVDTYMKGSNFKDGRNVFDEMKERNV 163

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK----- 231
            TW  ++  +   S  +EVL ++ +M+ EG +PN  +F       ++G+L +EG      
Sbjct: 164 VTWTTLISGYARNSLNEEVLTLFMRMQDEGTQPNSFTF-----AAALGVLAEEGVGGRGL 218

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           Q+H+ V+K G +D  I V+N+L++ Y  CG++ +A+  FD   V  V++WNS++S YA  
Sbjct: 219 QVHTVVVKNG-LDKTIPVSNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAAN 277

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
            L  +AL +F+ M+L   R S  SF   +   +    + F +Q+H  V K GF     ++
Sbjct: 278 GLDLEALGMFYSMRLNHVRLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQ-NI 336

Query: 352 QSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           ++AL   Y KC  +  ++ +F E+    ++    ++++  L +   ++AV +F  M  +G
Sbjct: 337 RTALMVAYSKCMAMLDALRLFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKG 396

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  +E T S  L AL V + +       +H   +K+ +E +  V  +L+DAY + G ++ 
Sbjct: 397 VRPNEFTYSVILTALPVISPSE------VHAQVVKTNYERSSTVGTALLDAYVKLGKVDE 450

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + +VF  I + ++V +++++ GY++ G    A+ +   + + G+ P++ TF  +L  C  
Sbjct: 451 AAKVFSGIDNKDIVAWSAMLAGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAA 510

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +         F+       +D+     S ++ M  + G ++ AEE+ ++     D + W+
Sbjct: 511 TTASMGQGKQFHGFAIKSRLDSSLCVSSALLTMYAKKGHIESAEEVFKRQR-EKDLVSWN 569

Query: 591 SLLRSCRVHGN 601
           S++     HG 
Sbjct: 570 SMISGYAQHGQ 580



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 130/473 (27%), Positives = 235/473 (49%), Gaps = 19/473 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  I+ ++K G++  A+ LFD+   + +VT+N +ISG        +AL ++  M  + +
Sbjct: 236 SNSLINLYLKCGNVRKARILFDKTEVKSVVTWNSMISGYAANGLDLEALGMFYSMRLNHV 295

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + S S+F+S++ +C+N        Q+HC V+  GF  +  I + L+  Y +    + AL 
Sbjct: 296 RLSESSFASIIKLCANLKELRFTEQLHCSVVKYGFVFDQNIRTALMVAYSKCMAMLDALR 355

Query: 167 LFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           LF E     N+ +W  M+  F +    +E + ++++MK +GV PN   F Y V   ++ +
Sbjct: 356 LFKETGFLGNVVSWTAMISGFLQNDGKEEAVGLFSEMKRKGVRPN--EFTYSVILTALPV 413

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
           +     ++H+ V+K  + + +  V  AL+D Y   G + EA K F  I   D+++W++++
Sbjct: 414 I--SPSEVHAQVVKTNY-ERSSTVGTALLDAYVKLGKVDEAAKVFSGIDNKDIVAWSAML 470

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGYVTKLGF 344
           + YA       A+++F  +     +P+  +F   LN  A+ T ++  GKQ HG+  K   
Sbjct: 471 AGYAQAGETEAAIKIFSELTKGGVKPNEFTFSSILNVCAATTASMGQGKQFHGFAIKSRL 530

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D  S+ V SAL  MY K   IES+  VF+    + L   NS+++     G    A+++F 
Sbjct: 531 D-SSLCVSSALLTMYAKKGHIESAEEVFKRQREKDLVSWNSMISGYAQHGQAMKALDVFK 589

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDA 461
            M    + +D VT      A + +     G      ++  C I    E N   SC ++D 
Sbjct: 590 EMKKRKVKMDSVTFIGVFAACTHAGLVEEGEKYFDIMVRDCKIAPTKEHN---SC-MVDL 645

Query: 462 YSRCGHIELSHQVFEKIPS-PNVVCFTSIMNG---YSRNGMGREALDMLEVMI 510
           YSR G +E + +V + +P+      + +I+     + +  +GR A + +  MI
Sbjct: 646 YSRAGQLEKAMKVIDNMPNLAGSTIWRTILAACRVHKKTELGRLAAEKIIAMI 698


>gi|356521082|ref|XP_003529187.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial-like [Glycine max]
          Length = 780

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 183/621 (29%), Positives = 340/621 (54%), Gaps = 5/621 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++++ N  ++ +V  G L  A KLFDEMP  + V++  L  G  +    ++A  L   +
Sbjct: 36  LDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSRSHQFQRARRLLLRL 95

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G + +   F+++L +  +       + +H  V  LG   + ++G+ L+D Y   G  
Sbjct: 96  FREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGHQADAFVGTALIDAYSVCGNV 155

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD +  +++ +W  M+  + E    ++ L ++ +M+  G  PN  +    ++ C
Sbjct: 156 DAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSC 215

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +       GK +H   +K+ + D +++V  AL++ Y+  G + EA++ F+ +P DD+I W
Sbjct: 216 NGLEAFKVGKSVHGCALKVCY-DRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPW 274

Query: 282 NSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           + ++S YA  D   +ALELF RM Q     P+  +F   L   +    +  G QIH  V 
Sbjct: 275 SLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVL 334

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K+G D  +V V +AL D+Y KC  IE+SV +F  +  ++    N+++   +  G+ + A+
Sbjct: 335 KVGLD-SNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKAL 393

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M+   I   EVT S+ L+A +   +   G  R +H   IK+ +  +  V+ SL+D
Sbjct: 394 NLFSNMLGLDIQPTEVTYSSVLRASASLVALEPG--RQIHSLTIKTMYNKDSVVANSLID 451

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG I+ +   F+K+   + V + +++ GYS +G+G EAL++ ++M Q    P+K+T
Sbjct: 452 MYAKCGRIDDARLTFDKMDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLT 511

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ VL+ C+++G++ +G+  F SM   YGI+   +HY+CM+ +LGR+G  D+A +L+ + 
Sbjct: 512 FVGVLSACSNAGLLDKGRAHFKSMLQDYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEI 571

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P     M+W +LL +C +H N  +G+  A  ++E+EP D A +  +SN Y+    ++   
Sbjct: 572 PFQPSVMVWRALLGACVIHKNLDLGKVCAQRVLEMEPQDDATHVLLSNMYATAKRWDNVA 631

Query: 641 QIRETALARKLTRDIGHSLIE 661
            +R+    +K+ ++ G S +E
Sbjct: 632 YVRKNMKKKKVKKEPGLSWVE 652



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 134/474 (28%), Positives = 238/474 (50%), Gaps = 9/474 (1%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  +HC +L  G  L+L+  + L++ Y+  G    A  LFDE+P  N  ++  + + F  
Sbjct: 22  GKSLHCHILKHGASLDLFAQNILLNTYVHFGFLEDASKLFDEMPLTNTVSFVTLAQGFSR 81

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
             +     R+  ++  EG E N   F  +++      L D    +H++V KLG    + F
Sbjct: 82  SHQFQRARRLLLRLFREGYEVNQFVFTTLLKLLVSMDLADTCLSVHAYVYKLGH-QADAF 140

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V  AL+D YS CG++  A++ FD I   D++SW  +V+ YA+     D+L LF +M++  
Sbjct: 141 VGTALIDAYSVCGNVDAARQVFDGIYFKDMVSWTGMVACYAENYCHEDSLLLFCQMRIMG 200

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            RP+  +    L   +       GK +HG   K+ +D   ++V  AL ++Y K   I  +
Sbjct: 201 YRPNNFTISAALKSCNGLEAFKVGKSVHGCALKVCYDR-DLYVGIALLELYTKSGEIAEA 259

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSV 427
              FE  P   L   + +++    S   K+A+E+F  M    + + +  T ++ L+A + 
Sbjct: 260 QQFFEEMPKDDLIPWSLMISRYAQSDKSKEALELFCRMRQSSVVVPNNFTFASVLQACAS 319

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
               NLG+   +H C +K G +SN+ VS +LMD Y++CG IE S ++F      N V + 
Sbjct: 320 LVLLNLGN--QIHSCVLKVGLDSNVFVSNALMDVYAKCGEIENSVKLFTGSTEKNEVAWN 377

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKS 546
           +I+ GY + G G +AL++   M+   + P +VT+  VL        ++ G+ + + ++K+
Sbjct: 378 TIIVGYVQLGDGEKALNLFSNMLGLDIQPTEVTYSSVLRASASLVALEPGRQIHSLTIKT 437

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +Y  + D    + +IDM  + G +D A     +     D + W++L+    +HG
Sbjct: 438 MY--NKDSVVANSLIDMYAKCGRIDDARLTFDKMD-KQDEVSWNALICGYSIHG 488



 Score =  162 bits (410), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 239/501 (47%), Gaps = 17/501 (3%)

Query: 16  LAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDM 75
           LA TC S+      L          Q + +     ID +   G++++A+++FD +  +DM
Sbjct: 119 LADTCLSVHAYVYKL--------GHQADAFVGTALIDAYSVCGNVDAARQVFDGIYFKDM 170

Query: 76  VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
           V++  +++   +    + +L L+ +M   G + +  T S+ L  C+    +  G  +H  
Sbjct: 171 VSWTGMVACYAENYCHEDSLLLFCQMRIMGYRPNNFTISAALKSCNGLEAFKVGKSVHGC 230

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
            L + +  +LY+G  L++LY + G    A   F+E+P+ +L  W+LM+  + +  +  E 
Sbjct: 231 ALKVCYDRDLYVGIALLELYTKSGEIAEAQQFFEEMPKDDLIPWSLMISRYAQSDKSKEA 290

Query: 196 LRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
           L ++ +M+    V PN  +F  +++ C+  +LL+ G Q+HS V+K+G +D N+FV+NAL+
Sbjct: 291 LELFCRMRQSSVVVPNNFTFASVLQACASLVLLNLGNQIHSCVLKVG-LDSNVFVSNALM 349

Query: 255 DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
           D Y+ CG +  + K F      + ++WN+I+  Y        AL LF  M     +P+  
Sbjct: 350 DVYAKCGEIENSVKLFTGSTEKNEVAWNTIIVGYVQLGDGEKALNLFSNMLGLDIQPTEV 409

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           ++   L  ++    +  G+QIH    K  ++  SV V ++L DMY KC  I+ +   F+ 
Sbjct: 410 TYSSVLRASASLVALEPGRQIHSLTIKTMYNKDSV-VANSLIDMYAKCGRIDDARLTFDK 468

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
              +     N+L+      G   +A+ +F  M       +++T    L A S +   + G
Sbjct: 469 MDKQDEVSWNALICGYSIHGLGMEALNLFDMMQQSNSKPNKLTFVGVLSACSNAGLLDKG 528

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGY 493
                       G E  I     ++    R G  + + ++  +IP  P+V+ + +++   
Sbjct: 529 RAHFKSMLQ-DYGIEPCIEHYTCMVWLLGRSGQFDEAVKLIGEIPFQPSVMVWRALLGA- 586

Query: 494 SRNGMGREALDMLEVMIQRGL 514
               +  + LD+ +V  QR L
Sbjct: 587 ---CVIHKNLDLGKVCAQRVL 604


>gi|108708629|gb|ABF96424.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
 gi|125586550|gb|EAZ27214.1| hypothetical protein OsJ_11153 [Oryza sativa Japonica Group]
          Length = 748

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 171/558 (30%), Positives = 300/558 (53%), Gaps = 12/558 (2%)

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLF 168
           A TF  +L      G      Q+H   L LG    + +    LV  Y+R G    A   F
Sbjct: 71  AFTFPPLLRAAQGPG---TAAQLHACALRLGLLRGDAFASGALVHAYLRFGRVRDAYRAF 127

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           DE+  R++  WN ML   C  +R  E + ++ +M  EGV  + ++   ++  C   +L D
Sbjct: 128 DEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMVMEGVAGDAVTVSSVLPMCV--LLGD 185

Query: 229 EGKQL--HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
               L  H + +K G +D  +FV NA++D Y   G L E +K FD +   D+++WNSI+S
Sbjct: 186 RALALAMHLYAVKHG-LDDELFVCNAMIDVYGKLGMLEEVRKVFDGMSSRDLVTWNSIIS 244

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            +     +  A+E+F  M+     P + + +   +  ++ G++  G+ +H Y+ + G+D 
Sbjct: 245 GHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGRSVHCYMVRRGWDV 304

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
           G +   +A+ DMY K + IE++  +F+S P R     N+L+T  + +G   +A+ ++  M
Sbjct: 305 GDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQNGLASEAIHVYDHM 364

Query: 407 VD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
              EG+   + T  + L A S   +   G+   +H  +IK+G   ++ V   ++D Y++C
Sbjct: 365 QKHEGLKPIQGTFVSVLPAYSHLGALQQGT--RMHALSIKTGLNLDVYVGTCVIDLYAKC 422

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ +  +FE+ P  +   + ++++G   +G G +AL +   M Q G+ PD VTF+ +L
Sbjct: 423 GKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEGISPDHVTFVSLL 482

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           A C+H+G+V +G+  FN M++ YGI    +HY+CM+DM GRAG LD A + ++  P   D
Sbjct: 483 AACSHAGLVDQGRNFFNMMQTAYGIKPIAKHYACMVDMFGRAGQLDDAFDFIRNMPIKPD 542

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             +W +LL +CR+HGN  +G+  +  L EL+P +   Y  +SN Y+++G+++   ++R  
Sbjct: 543 SAIWGALLGACRIHGNVEMGKVASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSL 602

Query: 646 ALARKLTRDIGHSLIEVN 663
              + L +  G S IEV 
Sbjct: 603 VRRQNLQKTPGWSSIEVK 620



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 131/560 (23%), Positives = 252/560 (45%), Gaps = 55/560 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + ++S   +  +++ G +  A + FDEM  RD+  +N ++SG  +     +A+ L+  MV
Sbjct: 103 DAFASGALVHAYLRFGRVRDAYRAFDEMRHRDVPAWNAMLSGLCRNARAAEAVGLFGRMV 162

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+   A T SSVL +C   G     + +H   +  G    L++ + ++D+Y ++G   
Sbjct: 163 MEGVAGDAVTVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLE 222

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               +FD +  R+L TWN ++    +  +    + M+  M+  GV P+ L+   +    +
Sbjct: 223 EVRKVFDGMSSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIA 282

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               +  G+ +H ++++ GW   +I   NA+VD Y+    +  A++ FD +PV D +SWN
Sbjct: 283 QCGDICGGRSVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWN 342

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++++ Y    L  +A+ ++  MQ     +P   +FV  L   S  G +  G ++H    K
Sbjct: 343 TLITGYMQNGLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIK 402

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G +   V+V + + D+Y KC  ++ ++ +FE  P RS    N++++ +   G+   A+ 
Sbjct: 403 TGLNL-DVYVGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALS 461

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M  EGI  D VT  + L A S +   + G     +      G +        ++D 
Sbjct: 462 LFSQMQQEGISPDHVTFVSLLAACSHAGLVDQGR-NFFNMMQTAYGIKPIAKHYACMVDM 520

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           + R G ++ +      +P                                  + PD   +
Sbjct: 521 FGRAGQLDDAFDFIRNMP----------------------------------IKPDSAIW 546

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILDKAEEL---- 576
             +L  C   G V+ G++   + ++++ +D     +Y  M +M  + G  D  +E+    
Sbjct: 547 GALLGACRIHGNVEMGKV---ASQNLFELDPKNVGYYVLMSNMYAKVGKWDGVDEVRSLV 603

Query: 577 ----LQQTPGGGDCMMWSSL 592
               LQ+TPG      WSS+
Sbjct: 604 RRQNLQKTPG------WSSI 617



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 191/395 (48%), Gaps = 9/395 (2%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T++++ P C  +   + +L +  Y  +      ++  N  ID + K G L   +K+FD M
Sbjct: 172 TVSSVLPMCVLLGDRALALAMHLYAVKHGLDDELFVCNAMIDVYGKLGMLEEVRKVFDGM 231

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
            +RD+VT+N +ISG  +      A+ ++  M   G+     T  S+ S  +  G    G 
Sbjct: 232 SSRDLVTWNSIISGHEQGGQVASAVEMFCGMRDSGVSPDVLTLLSLASAIAQCGDICGGR 291

Query: 131 QIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            +HC ++  G+ + ++  G+ +VD+Y ++     A  +FD +P R+  +WN ++  + + 
Sbjct: 292 SVHCYMVRRGWDVGDIIAGNAIVDMYAKLSKIEAAQRMFDSMPVRDAVSWNTLITGYMQN 351

Query: 190 SRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
               E + +Y+ M K EG++P   +F  ++   S    L +G ++H+  IK G ++++++
Sbjct: 352 GLASEAIHVYDHMQKHEGLKPIQGTFVSVLPAYSHLGALQQGTRMHALSIKTG-LNLDVY 410

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V   ++D Y+ CG L EA   F+  P      WN+++S    +     AL LF +MQ   
Sbjct: 411 VGTCVIDLYAKCGKLDEAMLLFEQTPRRSTGPWNAVISGVGVHGHGAKALSLFSQMQQEG 470

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDMYGKCNVIES 367
             P   +FV  L   S  G V  G+     + T  G    + H  + + DM+G+   ++ 
Sbjct: 471 ISPDHVTFVSLLAACSHAGLVDQGRNFFNMMQTAYGIKPIAKHY-ACMVDMFGRAGQLDD 529

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           +     + P   ++  +++  +LL +  I   VEM
Sbjct: 530 AFDFIRNMP---IKPDSAIWGALLGACRIHGNVEM 561


>gi|242037917|ref|XP_002466353.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
 gi|241920207|gb|EER93351.1| hypothetical protein SORBIDRAFT_01g006260 [Sorghum bicolor]
          Length = 862

 Score =  302 bits (773), Expect = 4e-79,   Method: Compositional matrix adjust.
 Identities = 185/659 (28%), Positives = 342/659 (51%), Gaps = 7/659 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  +  +C ++  +S   L+    +      ++Y  +  I  +  +G L  A+  
Sbjct: 139 PDAHTLPYVVKSCAALGAVSLGRLVHRTARATGLASDVYVGSALIKMYSDAGLLRDARDA 198

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD MP RD V +N+++ G  K      A+ L+  M   G + + +T +  LSVC+     
Sbjct: 199 FDGMPWRDCVLWNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADL 258

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G+Q+H   +  G    + + + L+ +Y +      A  LF+ LP  +L TWN M+   
Sbjct: 259 LSGVQLHSLAVKCGLEQEVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGC 318

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +    DE L ++  M   G  P+ ++   ++   +    L +GK++H ++I+   V ++
Sbjct: 319 VQNGLLDEALGLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQGKEVHGYIIR-NCVHMD 377

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF-FRMQ 305
            F+ +ALVD Y  C  +  A+  +D     DV+  ++++S Y    +   AL++F + ++
Sbjct: 378 AFLVSALVDIYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLE 437

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
            C K P+  +    L   +    +  G++IHGYV +  ++ G  +V+SAL DMY KC  +
Sbjct: 438 QCIK-PNAVTVASVLPACASISALPLGQEIHGYVLRNAYE-GKCYVESALMDMYAKCGRL 495

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           + S  +F     +     NS+++S   +G  ++A+++F  M  EGI  + VT+S+ L A 
Sbjct: 496 DLSHYIFSKMSLKDEVTWNSMISSFSQNGEPQEALDLFRQMCMEGIKYNNVTISSALSAC 555

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +   +   G  + +H   IK   +++I    +L+D Y++CG++EL+ +VFE +P  N V 
Sbjct: 556 ASLPAIYYG--KEIHGVIIKGPIKADIFAESALIDMYAKCGNMELALRVFEFMPDKNEVS 613

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + SI++ Y  +G+ +E++  L  M + G  PD VTFL +++ C H+G+V+EG  +F  M 
Sbjct: 614 WNSIISAYGAHGLVKESVSFLHRMQEEGYKPDHVTFLALISACAHAGLVEEGLQLFQCMT 673

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             Y I    +H++CM+D+  R+G LDKA + +   P   D  +W +LL +CRVH N  + 
Sbjct: 674 KEYLIAPRMEHFACMVDLYSRSGRLDKAIQFIADMPFKPDAGIWGALLHACRVHRNVELA 733

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
              +  L +L+P +   Y  +SN  +  G ++   ++R      K+ +  G+S ++VN+
Sbjct: 734 DIASQELFKLDPGNSGYYVLMSNINAVAGRWDGVSKVRRLMKDNKILKIPGYSWVDVNN 792



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 232/501 (46%), Gaps = 16/501 (3%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN---LYIGSPLVDLYMRMGPSVRAL 165
           SA    ++L  C +A     G+QIH R +  G   N   L + + L+ +Y+       A+
Sbjct: 31  SADRLLALLRGCVSAPHLPLGLQIHARAVVSGALSNHNHLALHTRLLGMYVLARRFRDAV 90

Query: 166 DLFDELPERNLAT---WNLMLRAFCELSRPDEVLRMYNKM--KAEGVEPNGLSFCYMVRG 220
            +F  LP     +   WN ++R F         +  Y KM        P+  +  Y+V+ 
Sbjct: 91  AVFSALPRAAAGSSLPWNWLIRGFTAAGHHSLAVLFYVKMWTHPAAPSPDAHTLPYVVKS 150

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    +  G+ +H      G +  +++V +AL+  YS  G L +A+ +FD +P  D + 
Sbjct: 151 CAALGAVSLGRLVHRTARATG-LASDVYVGSALIKMYSDAGLLRDARDAFDGMPWRDCVL 209

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN ++  Y     +  A+ LF  M++    P+  +   FL+  +   ++  G Q+H    
Sbjct: 210 WNVMMDGYIKAGDVGGAVRLFRNMRVSGCEPNFATLACFLSVCAAEADLLSGVQLHSLAV 269

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K G +   V V + L  MY KC  ++ +  +FE  P   L   N +++  + +G + +A+
Sbjct: 270 KCGLEQ-EVAVANTLLSMYAKCRCLDDAWRLFELLPRDDLVTWNGMISGCVQNGLLDEAL 328

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M+  G   D VTL + L AL+       G  + +H   I++    +  +  +L+D
Sbjct: 329 GLFCDMLRSGARPDSVTLVSLLPALTDLNGLKQG--KEVHGYIIRNCVHMDAFLVSALVD 386

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +C  +  +  +++   + +VV  +++++GY  NGM  +AL M   ++++ + P+ VT
Sbjct: 387 IYFKCRDVRTARNLYDAARAIDVVIGSTVISGYVLNGMSEKALQMFRYLLEQCIKPNAVT 446

Query: 521 FLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
              VL  C     +  GQ +    +++ Y  +      S ++DM  + G LD +  +  +
Sbjct: 447 VASVLPACASISALPLGQEIHGYVLRNAY--EGKCYVESALMDMYAKCGRLDLSHYIFSK 504

Query: 580 TPGGGDCMMWSSLLRSCRVHG 600
                D + W+S++ S   +G
Sbjct: 505 M-SLKDEVTWNSMISSFSQNG 524


>gi|449435958|ref|XP_004135761.1| PREDICTED: cohesin subunit SA-1-like [Cucumis sativus]
          Length = 1866

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 168/540 (31%), Positives = 299/540 (55%), Gaps = 9/540 (1%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLATWNLMLRAF 186
             QIH ++++       ++ + L++LY + G   + L LF   P+  +N+ +W  ++   
Sbjct: 46  ATQIHSQLITTALLSLPFLFNNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQL 105

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
               RP + L  +N M+  GV PN  +F  ++  C+       G+Q+HS V K G++   
Sbjct: 106 TRFKRPFKALTFFNHMRRSGVYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFL-AE 164

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           +FV +ALVD Y+ C  ++ A+K F+ +PV +++SWN+++  +    L +D    FF+  L
Sbjct: 165 VFVVSALVDMYAKCCDMLMAEKVFEEMPVRNLVSWNTMIVGFLQNKL-YDQAIFFFKTLL 223

Query: 307 CRKRPSIR--SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                ++   SF    +  +  GN+ FGKQ+HG   KLG     V++ ++L+DMYGKC +
Sbjct: 224 LENLTALDEVSFSSVFSACANAGNLEFGKQVHGVALKLGV-WNLVYINNSLSDMYGKCGL 282

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
                 +F +   R +   N ++ + +++ N +DA   F  M  +G   DE + S+ L +
Sbjct: 283 FNDVAKLFSNTGARDVVTWNIMIMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHS 342

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +  A+   G+  L+H   I+SGF  N+ V+ SL+  Y++CG +  + Q+FE+    NVV
Sbjct: 343 CANLAALYQGT--LIHNQIIRSGFVKNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVV 400

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           C+T+I+    ++G     +++ E M++ G+ PD +TF+ VL+ C+H+G V+EG   FNSM
Sbjct: 401 CWTAIIAACQQHGHANWVVELFEQMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSM 460

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
             V+GI    +HY+C++D+L RAG LD+A+  ++  P   D  +W +LL +CR H N I+
Sbjct: 461 IKVHGIYPGHEHYACIVDLLSRAGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIM 520

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           G+ VA  L +LEP +   Y  + N  +  G    + ++R    +  + ++ G S I++ +
Sbjct: 521 GKEVALKLFDLEPDNPGNYVLLCNILTRNGMLNEADEVRRKMESIGVRKEPGCSWIDIKN 580



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 132/508 (25%), Positives = 242/508 (47%), Gaps = 16/508 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           N  ++ + K G ++    LF   P  ++++V++  LI+   +F+ P +AL  ++ M   G
Sbjct: 66  NNLLNLYAKCGSVDQTLLLFSSAPDDSKNVVSWTSLITQLTRFKRPFKALTFFNHMRRSG 125

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +  +  TFS+VLS C++      G Q+H  V   GF   +++ S LVD+Y +    + A 
Sbjct: 126 VYPNHYTFSAVLSACTDTTASVHGEQMHSLVWKHGFLAEVFVVSALVDMYAKCCDMLMAE 185

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP-NGLSFCYMVRGCSIG 224
            +F+E+P RNL +WN M+  F +    D+ +  +  +  E +   + +SF  +   C+  
Sbjct: 186 KVFEEMPVRNLVSWNTMIVGFLQNKLYDQAIFFFKTLLLENLTALDEVSFSSVFSACANA 245

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L+ GKQ+H   +KLG  ++ +++ N+L D Y  CG   +  K F      DV++WN +
Sbjct: 246 GNLEFGKQVHGVALKLGVWNL-VYINNSLSDMYGKCGLFNDVAKLFSNTGARDVVTWNIM 304

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  Y       DA   F+ M+     P   S+   L+  +    +Y G  IH  + + GF
Sbjct: 305 IMAYVYNHNYEDACNSFWMMRRKGSIPDEASYSSVLHSCANLAALYQGTLIHNQIIRSGF 364

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              ++ V S+L  MY KC  +  +  +FE    R++ C  +++ +    G+    VE+F 
Sbjct: 365 V-KNLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFE 423

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+ EGI  D +T  + L A S +     G         +   +  +   +C ++D  SR
Sbjct: 424 QMLREGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVHGIYPGHEHYAC-IVDLLSR 482

Query: 465 CGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGRE-ALDMLEVMIQRGLIPDKV 519
            G ++ + +  E +P  P+   + ++++    +S   MG+E AL + ++       P   
Sbjct: 483 AGELDRAKRFIELMPIKPDASVWGALLSACRNHSNLIMGKEVALKLFDLEPDN---PGNY 539

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
             LC +   N  GM+ E   V   M+S+
Sbjct: 540 VLLCNILTRN--GMLNEADEVRRKMESI 565



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 44/155 (28%), Positives = 73/155 (47%), Gaps = 22/155 (14%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+  ++  I  + K G L  A ++F+E   R++V +  +I+ C +  H    + L+++M+
Sbjct: 367 NLRVASSLITMYAKCGSLVDAFQIFEETEDRNVVCWTAIIAACQQHGHANWVVELFEQML 426

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEG-------IQIHCRVLSLGFGLNLYIGSP----L 151
             GIK    TF SVLS CS+ G   EG       I++H           +Y G      +
Sbjct: 427 REGIKPDYITFVSVLSACSHTGRVEEGFFYFNSMIKVH----------GIYPGHEHYACI 476

Query: 152 VDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           VDL  R G   RA    + +P + + + W  +L A
Sbjct: 477 VDLLSRAGELDRAKRFIELMPIKPDASVWGALLSA 511


>gi|356558231|ref|XP_003547411.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
            chloroplastic-like [Glycine max]
          Length = 1135

 Score =  301 bits (772), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 195/652 (29%), Positives = 333/652 (51%), Gaps = 37/652 (5%)

Query: 40   PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
            P  ++  +N  ++ + K G L +A+++FD++P RD V++N +I+   +F   + +L+L+ 
Sbjct: 363  PPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFEEWELSLHLFR 422

Query: 100  EMVSHGIKESASTFSSVLSVCSNA-GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M+S  +  ++ T  SV   CS+  G    G Q+H   L  G  L  Y  + LV +Y R+
Sbjct: 423  LMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG-DLRTYTNNALVTMYARL 481

Query: 159  GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
            G    A  LF     ++L +WN ++ +  +  R +E L     M  +GV P+G++   ++
Sbjct: 482  GRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVL 541

Query: 219  RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
              CS    L  G+++H + ++ G +  N FV  ALVD Y  C    + +  FD +    V
Sbjct: 542  PACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTV 601

Query: 279  ISWNSIVSIYADYDLIFDALELFFRM----QLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
              WN++++ YA  +    AL LF  M    + C   P+  +F   L    R       + 
Sbjct: 602  AVWNALLAGYARNEFDDQALRLFVEMISESEFC---PNATTFASVLPACVRCKVFSDKEG 658

Query: 335  IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
            IHGY+ K GF     +VQ+AL DMY +   +E S  +F     R +   N+++T  +  G
Sbjct: 659  IHGYIVKRGFGKDK-YVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCG 717

Query: 395  NIKDAVEMFGFMV----------------DEGIGL--DEVTLSTTLKALSVSASANLGSC 436
               DA+ +   M                 D G+    + VTL T L     +A A LG  
Sbjct: 718  RYDDALNLLHEMQRRQGEDGSDTFVDYEDDGGVPFKPNSVTLMTVLPG--CAALAALGKG 775

Query: 437  RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
            + +H  A+K     ++AV  +L+D Y++CG + L+ +VF+++P  NV+ +  ++  Y  +
Sbjct: 776  KEIHAYAVKQKLAMDVAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIMAYGMH 835

Query: 497  GMGREALDMLEVMIQRG------LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            G G EAL++  +M   G      + P++VT++ + A C+HSGMV EG  +F++MK+ +G+
Sbjct: 836  GKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEGLHLFHTMKASHGV 895

Query: 551  DADRQHYSCMIDMLGRAGILDKAEELLQQTPGG-GDCMMWSSLLRSCRVHGNEIIGRRVA 609
            +    HY+C++D+LGR+G + +A EL+   P        WSSLL +CR+H +   G   A
Sbjct: 896  EPRGDHYACLVDLLGRSGRVKEAYELINTMPSNLNKVDAWSSLLGACRIHQSVEFGEIAA 955

Query: 610  NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
              L  LEP   + Y  +SN YS  G ++ ++ +R+      + ++ G S IE
Sbjct: 956  KHLFVLEPNVASHYVLMSNIYSSAGLWDQALGVRKKMKEMGVRKEPGCSWIE 1007



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 141/518 (27%), Positives = 235/518 (45%), Gaps = 52/518 (10%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSI---VPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKS 57
           MLS  + P   T+ ++A  C+ +   V L   +   +Y   N  L  Y++N  +  + + 
Sbjct: 424 MLSENVDPTSFTLVSVAHACSHVRGGVRLGKQV--HAYTLRNGDLRTYTNNALVTMYARL 481

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G +N AK LF     +D+V++N +IS   +    ++AL     M+  G++    T +SVL
Sbjct: 482 GRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGVRPDGVTLASVL 541

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
             CS       G +IHC  L  G  + N ++G+ LVD+Y       +   +FD +  R +
Sbjct: 542 PACSQLERLRIGREIHCYALRNGDLIENSFVGTALVDMYCNCKQPKKGRLVFDGVVRRTV 601

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           A WN +L  +      D+ LR++ +M +E    PN  +F  ++  C    +  + + +H 
Sbjct: 602 AVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACVRCKVFSDKEGIHG 661

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS---IYADYD 292
           +++K G+   + +V NAL+D YS  G +  +K  F  +   D++SWN++++   +   YD
Sbjct: 662 YIVKRGF-GKDKYVQNALMDMYSRMGRVEISKTIFGRMNKRDIVSWNTMITGCIVCGRYD 720

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF--------------------- 331
              DAL L   MQ  +      +FV++ +     G V F                     
Sbjct: 721 ---DALNLLHEMQRRQGEDGSDTFVDYED----DGGVPFKPNSVTLMTVLPGCAALAALG 773

Query: 332 -GKQIHGYVT--KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
            GK+IH Y    KL  D   V V SAL DMY KC  +  +  VF+  P R++   N L+ 
Sbjct: 774 KGKEIHAYAVKQKLAMD---VAVGSALVDMYAKCGCLNLASRVFDQMPIRNVITWNVLIM 830

Query: 389 SLLHSGNIKDAVEMFGFMVDEG------IGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
           +    G  ++A+E+F  M   G      I  +EVT      A S S   + G   L H  
Sbjct: 831 AYGMHGKGEEALELFRIMTAGGGSNREVIRPNEVTYIAIFAACSHSGMVDEG-LHLFHTM 889

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
               G E        L+D   R G ++ ++++   +PS
Sbjct: 890 KASHGVEPRGDHYACLVDLLGRSGRVKEAYELINTMPS 927



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 113/431 (26%), Positives = 207/431 (48%), Gaps = 10/431 (2%)

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+ + W  +LR+    S   + +  Y  M A    P+  +F  +++  +    L  GKQ+
Sbjct: 293 RSPSQWIDLLRSQTHSSSFRDAISTYAAMLAAPAPPDNFAFPAVLKAAAAVHDLCLGKQI 352

Query: 234 HSHVIKLGWVDV-NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           H+HV K G     ++ VAN+LV+ Y  CG L  A++ FD IP  D +SWNS+++    ++
Sbjct: 353 HAHVFKFGHAPPSSVAVANSLVNMYGKCGDLTAARQVFDDIPDRDHVSWNSMIATLCRFE 412

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT-GNVYFGKQIHGYVTKLGFDHGSVHV 351
               +L LF  M      P+  + V   +  S   G V  GKQ+H Y  + G      + 
Sbjct: 413 EWELSLHLFRLMLSENVDPTSFTLVSVAHACSHVRGGVRLGKQVHAYTLRNG--DLRTYT 470

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +AL  MY +   +  + A+F    G+ L   N++++SL  +   ++A+     M+ +G+
Sbjct: 471 NNALVTMYARLGRVNDAKALFGVFDGKDLVSWNTVISSLSQNDRFEEALMYVYLMIVDGV 530

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIEL 470
             D VTL++ L A S      +G  R +HC A+++G    N  V  +L+D Y  C   + 
Sbjct: 531 RPDGVTLASVLPACSQLERLRIG--REIHCYALRNGDLIENSFVGTALVDMYCNCKQPKK 588

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM-LEVMIQRGLIPDKVTFLCVLAGCN 529
              VF+ +    V  + +++ GY+RN    +AL + +E++ +    P+  TF  VL  C 
Sbjct: 589 GRLVFDGVVRRTVAVWNALLAGYARNEFDDQALRLFVEMISESEFCPNATTFASVLPACV 648

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
              +  + + +   +    G   D+   + ++DM  R G ++ ++ +  +     D + W
Sbjct: 649 RCKVFSDKEGIHGYIVK-RGFGKDKYVQNALMDMYSRMGRVEISKTIFGRM-NKRDIVSW 706

Query: 590 SSLLRSCRVHG 600
           ++++  C V G
Sbjct: 707 NTMITGCIVCG 717


>gi|224126745|ref|XP_002319916.1| predicted protein [Populus trichocarpa]
 gi|222858292|gb|EEE95839.1| predicted protein [Populus trichocarpa]
          Length = 606

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 167/554 (30%), Positives = 301/554 (54%), Gaps = 14/554 (2%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV-RALDLFDEL 171
           ++S+L  C+ A  +T GIQ H   +  G   + ++G+ L+ LY ++GP++  A  +FD L
Sbjct: 63  YASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLFEARRVFDGL 122

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             ++L +W  M+  + ++ +P + L ++ +M   G+EPNG +   +++ CS    L  GK
Sbjct: 123 FYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACSGLGDLRLGK 182

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
             H  V+  G+ D+N  ++ AL+D Y    ++ +A   F  +P  D I W SI+S +   
Sbjct: 183 CFHGVVMVRGF-DLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTSIISAFTRN 241

Query: 292 DLIFDALELFFRMQLCRKR---PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           D+   AL  F+ M  CRK    P   +F   L      G +  GK++H  V   G   G+
Sbjct: 242 DVYDKALGFFYSM--CRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITSGLS-GN 298

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           V V+S+L DMYGKC ++  S  VF+    ++L    +L+     +G+ +  + +F     
Sbjct: 299 VFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQNGDFESVIRIF----R 354

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           EG  +D  +  T L+A +  A+   G  + +HC  +K     ++    +L+D Y++CG I
Sbjct: 355 EGKKVDTYSFGTVLRACAGLAAVRQG--KEVHCQYVKRCCWRDVVTESALVDLYAKCGCI 412

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           + ++++F ++   N++ + S++ G+++NG G E   + + MI+ G+ PD ++F+ VL  C
Sbjct: 413 DFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFVGVLFAC 472

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +H+G+V +G+  F +M  VY I    +HY+CMID+LGRAG+L++AE L++      +  +
Sbjct: 473 SHAGLVDQGKKYFAAMTEVYEIKPGIEHYNCMIDLLGRAGLLEEAENLIENANCRDEPSL 532

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W+ LL +C    +     R+A   +EL+P     Y  ++N Y  +G ++ +++IR     
Sbjct: 533 WTVLLGACAASPHSATAERIAKKAVELKPDHHLSYVYLANVYRAVGRWDDAVKIRNLMTK 592

Query: 649 RKLTRDIGHSLIEV 662
           R + +  G S IE 
Sbjct: 593 RGVGKMPGTSWIET 606



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 233/480 (48%), Gaps = 18/480 (3%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSG-HLN 61
           T+L  +     +L  TCT  V  +  +   S+  +     + +  N  +  + K G +L 
Sbjct: 54  TRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSGLDTDRFVGNSLLALYFKLGPNLF 113

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            A+++FD +  +D++++  +I+G  K   PK++L L+ EM+  GI+ +  T S+V+  CS
Sbjct: 114 EARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEMLGLGIEPNGFTLSAVIKACS 173

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
             G    G   H  V+  GF LN  I + L+D+Y R      A+ +F ELP+ +   W  
Sbjct: 174 GLGDLRLGKCFHGVVMVRGFDLNDVISTALIDMYGRNSAVDDAILVFVELPQPDAICWTS 233

Query: 182 MLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
           ++ AF      D+ L  +  M +  G+ P+G +F  ++  C     L +GK++H+ VI  
Sbjct: 234 IISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVLTACGNLGRLKQGKEVHAKVITS 293

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G +  N+FV ++LVD Y  C  + +++  FD + V +++SW +++  Y   +  F+++  
Sbjct: 294 G-LSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSVKNLVSWTALLGGYCQ-NGDFESVIR 351

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH-GYVTKLGFDHGSVHVQSALTDMY 359
            FR     K+    SF   L   +    V  GK++H  YV +  +    V  +SAL D+Y
Sbjct: 352 IFREG---KKVDTYSFGTVLRACAGLAAVRQGKEVHCQYVKRCCWR--DVVTESALVDLY 406

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  I+ +  +F     R+L   NS++     +G   +  ++F  M++EGI  D ++  
Sbjct: 407 AKCGCIDFAYRIFVRMSVRNLITWNSMIYGFAQNGRGGEVFQLFDEMIEEGIRPDYISFV 466

Query: 420 TTLKALSVSASANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
             L A S +   + G      +     IK G E     +C ++D   R G +E +  + E
Sbjct: 467 GVLFACSHAGLVDQGKKYFAAMTEVYEIKPGIEH---YNC-MIDLLGRAGLLEEAENLIE 522



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 186/398 (46%), Gaps = 19/398 (4%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           +C+     E + + N +    +      +  +++ C+  +    G Q HSH IK G +D 
Sbjct: 35  YCKSGSLFEAIHVLNSIDWTRLSNKPFFYASLLQTCTKAVSFTHGIQFHSHAIKSG-LDT 93

Query: 246 NIFVANALVDFYSACG-SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           + FV N+L+  Y   G +L EA++ FD +   D+ISW S+++ Y   +    +LELF  M
Sbjct: 94  DRFVGNSLLALYFKLGPNLFEARRVFDGLFYKDLISWTSMITGYVKVEKPKKSLELFLEM 153

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P+  +    +   S  G++  GK  HG V   GFD   V + +AL DMYG+ + 
Sbjct: 154 LGLGIEPNGFTLSAVIKACSGLGDLRLGKCFHGVVMVRGFDLNDV-ISTALIDMYGRNSA 212

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLDEVTLSTTLK 423
           ++ ++ VF   P     C  S++++   +     A+  F  M  + G+  D  T  T L 
Sbjct: 213 VDDAILVFVELPQPDAICWTSIISAFTRNDVYDKALGFFYSMCRKHGLSPDGFTFGTVL- 271

Query: 424 ALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
               +A  NLG  +    +H   I SG   N+ V  SL+D Y +C  +  S  VF+++  
Sbjct: 272 ----TACGNLGRLKQGKEVHAKVITSGLSGNVFVESSLVDMYGKCRLVNQSQCVFDRMSV 327

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            N+V +T+++ GY +NG      + +  + + G   D  +F  VL  C     V++G+ V
Sbjct: 328 KNLVSWTALLGGYCQNG----DFESVIRIFREGKKVDTYSFGTVLRACAGLAAVRQGKEV 383

Query: 541 F-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
               +K     D   +  S ++D+  + G +D A  + 
Sbjct: 384 HCQYVKRCCWRDVVTE--SALVDLYAKCGCIDFAYRIF 419


>gi|255586014|ref|XP_002533676.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223526427|gb|EEF28706.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 726

 Score =  301 bits (771), Expect = 8e-79,   Method: Compositional matrix adjust.
 Identities = 185/623 (29%), Positives = 329/623 (52%), Gaps = 16/623 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           + S + I  + K   L SA  +F  +   + +++NL++     F    +AL LY +M   
Sbjct: 63  FPSTKLISFYSKFNDLESAISVFSLLQEPNTLSWNLIMRTHLDFGLVTEALLLYKKMRES 122

Query: 105 GIKESASTFSSV-LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           G+K  A TF ++  +V S       G  +HC  + LGFG +LY  + ++++Y R G    
Sbjct: 123 GVKTDAFTFPTINRAVMSLKSDVLLGKMVHCDAMKLGFGYDLYFCNTMIEVYARCGCVYY 182

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
              +FDE+  R+L +W  M+  +           ++NKM+ E +EPN ++   M++GC  
Sbjct: 183 GRVMFDEMSPRDLVSWTSMISGYVSEGNVFSAFELFNKMRLE-MEPNSVTLIVMLKGCYA 241

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                EG+QLH ++IK G + +   V N+++  YS  GS  E +  F  I   DVISWN+
Sbjct: 242 YDNFSEGRQLHCYIIKNGLL-IYGSVQNSILRMYSITGSAKEVESLFVEIYRRDVISWNT 300

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRS--FVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++  YA   L  DA E+       R   ++ S      ++  ++ GN+  G+++H +  K
Sbjct: 301 LIGFYA---LRGDAEEMVCGFNQMRGEVALSSETLTLVISVFAKIGNLVEGEKLHSFSIK 357

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           +G     +   ++L D Y KC  + +SV +F   P RS      +M+  + +G   +A+ 
Sbjct: 358 VGLCDDVL--LASLLDFYAKCGELRNSVQLFGEIPCRSSSTWKLMMSGCIQNGYFDEAIH 415

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE----SNIAVSCS 457
           +F  M   G+ L    L + + A S   S  L  C+ +H    ++ F      NI +  S
Sbjct: 416 LFRQMQASGVQLQAQILGSLVDACSHLGSLQL--CKEIHGYLTRNFFYILEGDNIHLGTS 473

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           +++ Y RCG I  + + F ++ + + + +TS++ GY  +GM  EAL +   M+   ++P+
Sbjct: 474 ILNMYIRCGSISSAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQMLVERVLPN 533

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           +VTFL +L+ C+HSG++++G  +F SMK V+G++ D  HY+CM+D+LGR G + +A  ++
Sbjct: 534 RVTFLSLLSACSHSGLIRQGCELFLSMKWVFGMEPDLDHYTCMVDLLGRCGKIKEALAMI 593

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            +     D  +W +L+ SCRVHG++ +G   A  L+E+E  +   Y+ +SN  + +G+++
Sbjct: 594 IRMVVVADSRIWGALVASCRVHGDKKVGEFAAQRLLEMESDNVGYYTLLSNIQAMVGKWD 653

Query: 638 VSMQIRETALARKLTRDIGHSLI 660
              Q+R+    + L +  G S I
Sbjct: 654 EVEQVRKVIHEKDLRKTPGWSCI 676



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 136/592 (22%), Positives = 267/592 (45%), Gaps = 62/592 (10%)

Query: 10  VRTITTLAPTCT-SIVPLSSSLLLDSYCQPNPQ-----LNIYSSNRTIDDFVKSGHLNSA 63
           V+T     PT   +++ L S +LL      +        ++Y  N  I+ + + G +   
Sbjct: 124 VKTDAFTFPTINRAVMSLKSDVLLGKMVHCDAMKLGFGYDLYFCNTMIEVYARCGCVYYG 183

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           + +FDEM  RD+V++  +ISG     +   A  L+++M    ++ ++ T   +L  C   
Sbjct: 184 RVMFDEMSPRDLVSWTSMISGYVSEGNVFSAFELFNKMRLE-MEPNSVTLIVMLKGCYAY 242

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
             ++EG Q+HC ++  G  +   + + ++ +Y   G +     LF E+  R++ +WN ++
Sbjct: 243 DNFSEGRQLHCYIIKNGLLIYGSVQNSILRMYSITGSAKEVESLFVEIYRRDVISWNTLI 302

Query: 184 RAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
             +      +E++  +N+M+ E  +    L+    V    IG L+ EG++LHS  IK+G 
Sbjct: 303 GFYALRGDAEEMVCGFNQMRGEVALSSETLTLVISVFA-KIGNLV-EGEKLHSFSIKVGL 360

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            D ++ +A +L+DFY+ CG L  + + F  IP     +W  ++S         +A+ LF 
Sbjct: 361 CD-DVLLA-SLLDFYAKCGELRNSVQLFGEIPCRSSSTWKLMMSGCIQNGYFDEAIHLFR 418

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF---DHGSVHVQSALTDMY 359
           +MQ    +   +     ++  S  G++   K+IHGY+T+  F   +  ++H+ +++ +MY
Sbjct: 419 QMQASGVQLQAQILGSLVDACSHLGSLQLCKEIHGYLTRNFFYILEGDNIHLGTSILNMY 478

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +C  I S+   F     +      S++      G   +A+++F  M+ E +  + VT  
Sbjct: 479 IRCGSISSAREYFNRMVAKDNITWTSMIEGYGIHGMAIEALKLFNQMLVERVLPNRVTFL 538

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A S S     G C L        G E ++     ++D   RCG I           
Sbjct: 539 SLLSACSHSGLIRQG-CELFLSMKWVFGMEPDLDHYTCMVDLLGRCGKI----------- 586

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
                               +EAL M+  M+   ++ D   +  ++A C   G  K G+ 
Sbjct: 587 --------------------KEALAMIIRMV---VVADSRIWGALVASCRVHGDKKVGEF 623

Query: 540 VFNSMKSVYGIDADR-QHYSCMIDMLGRAGILDKAEEL--------LQQTPG 582
              + + +  +++D   +Y+ + ++    G  D+ E++        L++TPG
Sbjct: 624 ---AAQRLLEMESDNVGYYTLLSNIQAMVGKWDEVEQVRKVIHEKDLRKTPG 672



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 73/274 (26%), Positives = 129/274 (47%), Gaps = 8/274 (2%)

Query: 231 KQLH-SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           KQ+H S ++  G+ +   F +  L+ FYS    L  A   F  +   + +SWN I+  + 
Sbjct: 45  KQIHASLLVSTGFNESISFPSTKLISFYSKFNDLESAISVFSLLQEPNTLSWNLIMRTHL 104

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA--SRTGNVYFGKQIHGYVTKLGFDHG 347
           D+ L+ +AL L+ +M+    +    +F   +N A  S   +V  GK +H    KLGF + 
Sbjct: 105 DFGLVTEALLLYKKMRESGVKTDAFTFPT-INRAVMSLKSDVLLGKMVHCDAMKLGFGY- 162

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++  + + ++Y +C  +     +F+    R L    S+++  +  GN+  A E+F  M 
Sbjct: 163 DLYFCNTMIEVYARCGCVYYGRVMFDEMSPRDLVSWTSMISGYVSEGNVFSAFELFNKMR 222

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            E +  + VTL   LK     A  N    R LHC  IK+G     +V  S++  YS  G 
Sbjct: 223 LE-MEPNSVTLIVMLKG--CYAYDNFSEGRQLHCYIIKNGLLIYGSVQNSILRMYSITGS 279

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
            +    +F +I   +V+ + +++  Y+  G   E
Sbjct: 280 AKEVESLFVEIYRRDVISWNTLIGFYALRGDAEE 313


>gi|297719939|ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
 gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|215768699|dbj|BAH00928.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa Japonica Group]
          Length = 877

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 185/629 (29%), Positives = 338/629 (53%), Gaps = 19/629 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +++ +N  +  +   G ++ A+++F+E  + R+ V++N L+S   K      A+ ++ EM
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  GI+ +   FS V++ C+ +     G Q+H  V+ +G+  +++  + LVD+YM+MG  
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRG 220
             A  +F+++P+ ++ +WN ++   C L+  D   + +  +MK  G+ PN  +   +++ 
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISG-CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKA 312

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS     D G+Q+H  +IK    D + ++   LVD Y+    L +A+K FD++   D+I 
Sbjct: 313 CSGAGAFDLGRQIHGFMIKAN-ADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 281 WNSIVSIYADYDLIFDALELFFRMQ---LCRKRPSIRSFVEF---LNFASRTGNVYFGKQ 334
            N+++S  +      +AL LF+ ++   L   R ++ + ++    L  AS T      +Q
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTT------RQ 425

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H    K+GF     HV + L D Y KC+ +  +  VFE      +  C S++T+L    
Sbjct: 426 VHALAVKIGFIF-DAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
           + + A+++F  M+ +G+  D   LS+ L A +  ++   G  + +H   IK  F S+   
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG--KQVHAHLIKRQFMSDAFA 542

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+  Y++CG IE +   F  +P   VV +++++ G +++G G+ AL++   M+  G+
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ +T   VL  CNH+G+V E +  FNSMK ++GID   +HYSCMID+LGRAG LD A 
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           EL+   P   +  +W +LL + RVH +  +G+  A  L  LEP     +  ++N Y+  G
Sbjct: 663 ELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAG 722

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            +    ++R+      + ++   S IEV 
Sbjct: 723 MWNEVAKVRKLMKDSNIKKEPAMSWIEVK 751



 Score =  220 bits (560), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 283/555 (50%), Gaps = 21/555 (3%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+++FDE+P    V+++ L++       P+ A+  +  M + G+  +      VL    +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL-PERNLATWNL 181
           A     G Q+H   ++ GFG ++++ + LV +Y   G    A  +F+E   ERN  +WN 
Sbjct: 116 ARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++ A+ +  +  + ++++ +M   G++P    F  +V  C+    ++ G+Q+H+ V+++G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG 232

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS--IYADYDLIFDALE 299
           + D ++F ANALVD Y   G +  A   F+ +P  DV+SWN+++S  +   +D    A+E
Sbjct: 233 Y-DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD--HRAIE 289

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L  +M+     P++ +    L   S  G    G+QIHG++ K   D    ++   L DMY
Sbjct: 290 LLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDD-YIGVGLVDMY 348

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K + ++ +  VF+    R L  CN+L++   H G   +A+ +F  +  EG+G++  TL+
Sbjct: 349 AKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLA 408

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             LK+ +   +A+  + R +H  A+K GF  +  V   L+D+Y +C  +  +++VFE+  
Sbjct: 409 AVLKSTASLEAAS--TTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECS 466

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           S +++  TS++   S+   G  A+ +   M+++GL PD      +L  C      ++G+ 
Sbjct: 467 SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 540 VFNSM-KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           V   + K  +  DA     + ++    + G ++ AE      P  G  + WS+++     
Sbjct: 527 VHAHLIKRQFMSDAFAG--NALVYTYAKCGSIEDAELAFSSLPERG-VVSWSAMIGGLAQ 583

Query: 599 HGN-----EIIGRRV 608
           HG+     E+ GR V
Sbjct: 584 HGHGKRALELFGRMV 598



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 136/558 (24%), Positives = 260/558 (46%), Gaps = 17/558 (3%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            SA T S  L+  + A     G  +H  +L  G   +    + L+  Y +      A  +
Sbjct: 2   RSAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRV 59

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P+    +W+ ++ A+     P   ++ ++ M+AEGV  N  +   +++      L 
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL- 118

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
             G Q+H+  +  G+   ++FVANALV  Y   G + +A++ F+    + + +SWN ++S
Sbjct: 119 --GAQVHAMAMATGF-GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMS 175

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y   D   DA+++F  M     +P+   F   +N  + + N+  G+Q+H  V ++G+D 
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK 235

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V   +AL DMY K   ++ +  +FE  P   +   N+L++  + +G+   A+E+   M
Sbjct: 236 -DVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              G+  +  TLS+ LKA S + + +LG  R +H   IK+  +S+  +   L+D Y++  
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLG--RQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            ++ + +VF+ +   +++   ++++G S  G   EAL +   + + GL  ++ T   VL 
Sbjct: 353 FLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLK 412

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG-- 584
                      + V +++    G   D    + +ID   +   L  A  + ++   G   
Sbjct: 413 STASLEAASTTRQV-HALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDII 471

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
            C    + L  C  HG   I   +  +   LEP  F V S + N  + +  +E   Q+  
Sbjct: 472 ACTSMITALSQCD-HGEGAIKLFMEMLRKGLEPDPF-VLSSLLNACASLSAYEQGKQVHA 529

Query: 645 TALARKLTRD--IGHSLI 660
             + R+   D   G++L+
Sbjct: 530 HLIKRQFMSDAFAGNALV 547


>gi|302769798|ref|XP_002968318.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
 gi|300163962|gb|EFJ30572.1| hypothetical protein SELMODRAFT_599 [Selaginella moellendorffii]
          Length = 666

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 186/667 (27%), Positives = 338/667 (50%), Gaps = 45/667 (6%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAK 64
           LLP   +  T   +C  I  L++   +      +  L  I   N  ++ + K G L  A+
Sbjct: 2   LLPDNVSFITALKSCVRIQSLAAGKFIHLLVIESGLLTQISVGNALVNMYGKCGSLALAR 61

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNA 123
           ++FD M  RD++++N +I+   +  H K+A+ L+  M   G I+  + TF +V+S C + 
Sbjct: 62  EVFDGMDHRDVISWNAVITAYAQAGHCKEAMELFQAMQEDGRIEPDSVTFVAVVSACCDP 121

Query: 124 GFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                G +I   V   G    ++ +G+ LV++Y + G    A  +F+ +  R++ +WN +
Sbjct: 122 SALEAGDKIFALVEERGLLDSDVVLGNALVNMYSKCGSLKSATMVFERMKIRDVVSWNAI 181

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVE-------PNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           + A     R D  ++ + +M+ EG+        P+G +    +  C+   +L+EG+++H+
Sbjct: 182 ISALARHDRKDIAMQRFREMQLEGLSPKEEALLPDGFTLASALAACTGPEMLEEGREIHA 241

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            VI+ G  +  + V NALV  Y+ CG+L +A + F  +   +V+SWN++++ Y  ++   
Sbjct: 242 LVIERG-CESELVVGNALVSMYANCGTLQDALECFQKMAQRNVVSWNAMIAAYVHHNCDK 300

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +A  +F +MQL   +P+  +FV FL+  S       G Q+H  V + G +     V +A+
Sbjct: 301 EAFRIFHQMQLEGVQPNSVTFVTFLSACSTPAAFEDGLQLHSIVRESGLE-ADASVGNAV 359

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI------------------- 396
             M+ KC  ++ ++A F+  P ++L   N L+ + +H G +                   
Sbjct: 360 VHMFAKCWSLDDALAAFQRIPQKNLGSWNGLLGAYIHVGRLAEARKLFEVMEERDVITWN 419

Query: 397 ------------KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
                       K+AV +F  M+ EG   + +T +T L A   +  A L   R +H    
Sbjct: 420 MILGAYVEREMAKEAVRLFRRMIAEGTKSNSITWTTMLGA--CAGEALLAEGRRIHELIG 477

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           + G +S + V  +L+D + +C  +  + Q FE+I   +   +  ++   ++NG   EAL 
Sbjct: 478 ERGADSELFVGNALVDMFGKCASLGGARQAFERIRGKDASSWNVLVAALAQNGDAEEALK 537

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
               M + G+ P  VTF+ V   C+H+G +++ + +F S++  YGI     HYS M D+L
Sbjct: 538 QFLQMQREGIKPTDVTFIVVFWACSHAGRLEQAKTIFASLRHDYGIAPLPSHYSGMTDLL 597

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624
           GRAG LD+AEE++++ P   D + W +LL +C+VHG+   GR+VA  ++   P D A   
Sbjct: 598 GRAGFLDEAEEVIKRIPFSQDELPWMTLLSACKVHGDVERGRKVAGQVLRWNPGDSAARV 657

Query: 625 QVSNFYS 631
            +SN ++
Sbjct: 658 ALSNIFA 664


>gi|115476154|ref|NP_001061673.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|27260973|dbj|BAC45090.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|40253357|dbj|BAD05289.1| selenium-binding protein-like [Oryza sativa Japonica Group]
 gi|113623642|dbj|BAF23587.1| Os08g0375800 [Oryza sativa Japonica Group]
 gi|215715200|dbj|BAG94951.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 696

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 203/652 (31%), Positives = 333/652 (51%), Gaps = 28/652 (4%)

Query: 28  SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH--LNSAKKLFDEMPARDMVTYN-LLISG 84
           +SLL      P P       N+ +  + +S    L +A+++FDE+P RD V++N LL + 
Sbjct: 15  ASLLKSGVAAPTPW------NQLLTAYSRSSPDGLAAARRVFDEVPRRDEVSWNALLAAQ 68

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
                HP +A  L   M + G+  +     S L   + A     G Q+    L  G   N
Sbjct: 69  AASGAHP-EAWRLLRAMHAQGLASNTFALGSALRSAAVARRPAIGAQLQSLALKSGLANN 127

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           ++  S L+D+Y + G    A  +FD +PERN  +WN ++  + E       L ++ +M+ 
Sbjct: 128 VFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEMER 187

Query: 205 EGVEPNGLSFCYM---VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           EG+ P+  +F  +   V G S  ++     QLH  ++K G   + + V NA +  YS CG
Sbjct: 188 EGLAPDEATFASLLTAVEGPSCFLM----HQLHGKIVKYG-SALGLTVLNAAITAYSQCG 242

Query: 262 SLIEAKKSFDFI-PVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEF 319
           SL ++++ FD I  + D+ISWN+++  Y    +  +A++ F RM Q     P + SF   
Sbjct: 243 SLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSI 302

Query: 320 LNFASRTG-NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN---VIESSVAVFESA 375
           ++  S  G + + G+ IHG V K   + G   V +AL  MY + N   ++E +   F S 
Sbjct: 303 ISSCSEHGHDDHQGRVIHGLVIKSALE-GVTPVCNALIAMYTRYNENCMMEDAYKCFNSL 361

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
             +     NS++T     G   DA++ F  M  E +  DE   S  L++ S  A   LG 
Sbjct: 362 VLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLG- 420

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + +H   I SGF SN  VS SL+  YS+ G I+ + + FE+    + V + +++ GY++
Sbjct: 421 -KQIHGLVIHSGFASNDFVSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQ 479

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +G       +   M+QR    D +TF+ ++  C+H+G+V EG  + N+M++ YG+    +
Sbjct: 480 HGQAENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGSEILNTMETKYGVPLRME 539

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           HY+C +D+ GRAG LDKA++L+   P   D M+W +LL +CR+HGN  +   VA+ L   
Sbjct: 540 HYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLLGACRIHGNVELASDVASHLFVA 599

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           EP   + Y  +S+ YS +G +     ++     R L++  G S IEV N  H
Sbjct: 600 EPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKRGLSKVPGWSWIEVKNEVH 651


>gi|125570322|gb|EAZ11837.1| hypothetical protein OsJ_01713 [Oryza sativa Japonica Group]
          Length = 877

 Score =  301 bits (770), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 185/629 (29%), Positives = 338/629 (53%), Gaps = 19/629 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +++ +N  +  +   G ++ A+++F+E  + R+ V++N L+S   K      A+ ++ EM
Sbjct: 134 DVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMSAYVKNDQCGDAIQVFGEM 193

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  GI+ +   FS V++ C+ +     G Q+H  V+ +G+  +++  + LVD+YM+MG  
Sbjct: 194 VWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDKDVFTANALVDMYMKMGRV 253

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRG 220
             A  +F+++P+ ++ +WN ++   C L+  D   + +  +MK  G+ PN  +   +++ 
Sbjct: 254 DIASVIFEKMPDSDVVSWNALISG-CVLNGHDHRAIELLLQMKYSGLVPNVFTLSSILKA 312

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS     D G+Q+H  +IK    D + ++   LVD Y+    L +A+K FD++   D+I 
Sbjct: 313 CSGAGAFDLGRQIHGFMIKAN-ADSDDYIGVGLVDMYAKNHFLDDARKVFDWMFHRDLIL 371

Query: 281 WNSIVSIYADYDLIFDALELFFRMQ---LCRKRPSIRSFVEF---LNFASRTGNVYFGKQ 334
            N+++S  +      +AL LF+ ++   L   R ++ + ++    L  AS T      +Q
Sbjct: 372 CNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLKSTASLEAASTT------RQ 425

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H    K+GF     HV + L D Y KC+ +  +  VFE      +  C S++T+L    
Sbjct: 426 VHALAVKIGFIF-DAHVVNGLIDSYWKCSCLSDANRVFEECSSGDIIACTSMITALSQCD 484

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
           + + A+++F  M+ +G+  D   LS+ L A +  ++   G  + +H   IK  F S+   
Sbjct: 485 HGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG--KQVHAHLIKRQFMSDAFA 542

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+  Y++CG IE +   F  +P   VV +++++ G +++G G+ AL++   M+  G+
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ +T   VL  CNH+G+V E +  FNSMK ++GID   +HYSCMID+LGRAG LD A 
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAM 662

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           EL+   P   +  +W +LL + RVH +  +G+  A  L  LEP     +  ++N Y+  G
Sbjct: 663 ELVNSMPFQANASIWGALLGASRVHKDPELGKLAAEKLFILEPEKSGTHVLLANTYASAG 722

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            +    ++R+      + ++   S IEV 
Sbjct: 723 MWNEVAKVRKLMKDSNIKKEPAMSWIEVK 751



 Score =  219 bits (559), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 148/555 (26%), Positives = 282/555 (50%), Gaps = 21/555 (3%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A++ FDE+P    V+++ L++       P+ A+  +  M + G+  +      VL    +
Sbjct: 56  ARRFFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL-PERNLATWNL 181
           A     G Q+H   ++ GFG ++++ + LV +Y   G    A  +F+E   ERN  +WN 
Sbjct: 116 ARL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNG 172

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++ A+ +  +  + ++++ +M   G++P    F  +V  C+    ++ G+Q+H+ V+++G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMG 232

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS--IYADYDLIFDALE 299
           + D ++F ANALVD Y   G +  A   F+ +P  DV+SWN+++S  +   +D    A+E
Sbjct: 233 Y-DKDVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD--HRAIE 289

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L  +M+     P++ +    L   S  G    G+QIHG++ K   D    ++   L DMY
Sbjct: 290 LLLQMKYSGLVPNVFTLSSILKACSGAGAFDLGRQIHGFMIKANADSDD-YIGVGLVDMY 348

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K + ++ +  VF+    R L  CN+L++   H G   +A+ +F  +  EG+G++  TL+
Sbjct: 349 AKNHFLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLA 408

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             LK+ +   +A+  + R +H  A+K GF  +  V   L+D+Y +C  +  +++VFE+  
Sbjct: 409 AVLKSTASLEAAS--TTRQVHALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECS 466

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           S +++  TS++   S+   G  A+ +   M+++GL PD      +L  C      ++G+ 
Sbjct: 467 SGDIIACTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 540 VFNSM-KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           V   + K  +  DA     + ++    + G ++ AE      P  G  + WS+++     
Sbjct: 527 VHAHLIKRQFMSDAFAG--NALVYTYAKCGSIEDAELAFSSLPERG-VVSWSAMIGGLAQ 583

Query: 599 HGN-----EIIGRRV 608
           HG+     E+ GR V
Sbjct: 584 HGHGKRALELFGRMV 598



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 136/558 (24%), Positives = 259/558 (46%), Gaps = 17/558 (3%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            SA T S  L+  + A     G  +H  +L  G   +    + L+  Y +      A   
Sbjct: 2   RSAGTISQQLTRYAAAQALLPGAHLHASLLKSGSLASFR--NHLISFYSKCRRPCCARRF 59

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P+    +W+ ++ A+     P   ++ ++ M+AEGV  N  +   +++      L 
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDARL- 118

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
             G Q+H+  +  G+   ++FVANALV  Y   G + +A++ F+    + + +SWN ++S
Sbjct: 119 --GAQVHAMAMATGF-GSDVFVANALVAMYGGFGFMDDARRVFNEADSERNAVSWNGLMS 175

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y   D   DA+++F  M     +P+   F   +N  + + N+  G+Q+H  V ++G+D 
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIEAGRQVHAMVVRMGYDK 235

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V   +AL DMY K   ++ +  +FE  P   +   N+L++  + +G+   A+E+   M
Sbjct: 236 -DVFTANALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              G+  +  TLS+ LKA S + + +LG  R +H   IK+  +S+  +   L+D Y++  
Sbjct: 295 KYSGLVPNVFTLSSILKACSGAGAFDLG--RQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            ++ + +VF+ +   +++   ++++G S  G   EAL +   + + GL  ++ T   VL 
Sbjct: 353 FLDDARKVFDWMFHRDLILCNALISGCSHGGRHDEALSLFYELRKEGLGVNRTTLAAVLK 412

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG-- 584
                      + V +++    G   D    + +ID   +   L  A  + ++   G   
Sbjct: 413 STASLEAASTTRQV-HALAVKIGFIFDAHVVNGLIDSYWKCSCLSDANRVFEECSSGDII 471

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
            C    + L  C  HG   I   +  +   LEP  F V S + N  + +  +E   Q+  
Sbjct: 472 ACTSMITALSQCD-HGEGAIKLFMEMLRKGLEPDPF-VLSSLLNACASLSAYEQGKQVHA 529

Query: 645 TALARKLTRD--IGHSLI 660
             + R+   D   G++L+
Sbjct: 530 HLIKRQFMSDAFAGNALV 547


>gi|148906747|gb|ABR16520.1| unknown [Picea sitchensis]
          Length = 644

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 186/600 (31%), Positives = 315/600 (52%), Gaps = 45/600 (7%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG-LNLYIGSP 150
           ++AL++  +MV +GI   +ST+ S+L  C NA    +   +H  ++   F   ++ +G+ 
Sbjct: 46  REALHILQDMVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNK 105

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV +Y+++G  V A  +FDE+P +N+ +W  M+ A+       E L  + +M+  G++PN
Sbjct: 106 LVSIYVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPN 165

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +F  ++  C+   +L E    H  ++K G+ + N+FV N LVD Y+  G +  A++ F
Sbjct: 166 HFTFASILPACTDLEVLGE---FHDEIVKGGF-ESNVFVGNGLVDMYAKRGCIEFARELF 221

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP---------------SIRS 315
           D +P  DV+SWN++++ Y    LI DAL+LF   Q   KR                 + +
Sbjct: 222 DKMPQRDVVSWNAMIAGYVQNGLIEDALKLF---QEIPKRDVITWNTMMAGYAQCGDVEN 278

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI---------- 365
            VE          V +   I GYV      +GSV     L  +  + NVI          
Sbjct: 279 AVELFEKMPEQNLVSWNTMIAGYV-----QNGSVKEAFKLFQIMPERNVISWNAVISGFA 333

Query: 366 -----ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
                E ++ +F++ P  ++   N+++     +G  ++A+++FG M    +  +  T + 
Sbjct: 334 QNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAI 393

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L A   +A A L      H   I+SGF+S++ V  +L+  Y++CG IE + +VF+++  
Sbjct: 394 VLPA--CAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQ 451

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            +    ++++ GY+ NG  +E+L++ E M   GL PD+VTF+ VL+ C H+G+V EG+  
Sbjct: 452 QDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSACCHAGLVDEGRQY 511

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F+ M   Y I    +HY CMID+LGRAG  D+A +L+ + P   D  MW SLL +CR H 
Sbjct: 512 FDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDADMWGSLLSACRTHN 571

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           N  +G +VA  L+ L P + A Y  +SN Y+  G ++    +R     RK+ + +G S I
Sbjct: 572 NIDLGEKVAQHLIALNPQNPAPYVLLSNIYAAAGRWDDIGSVRNRMKDRKVKKKLGCSWI 631



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 115/458 (25%), Positives = 217/458 (47%), Gaps = 48/458 (10%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-------CQPNPQLNIYSSNRTIDD 53
           M+   + P   T  +L   C +   L  + LL ++       CQ     +I   N+ +  
Sbjct: 55  MVENGIWPHSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQ-----DISLGNKLVSI 109

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +VK G L  A+++FDEMP +++V++  +I+   +  H ++AL  + EM   GI+ +  TF
Sbjct: 110 YVKLGSLVEARRVFDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTF 169

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +S+L  C++     E    H  ++  GF  N+++G+ LVD+Y + G    A +LFD++P+
Sbjct: 170 ASILPACTDLEVLGE---FHDEIVKGGFESNVFVGNGLVDMYAKRGCIEFARELFDKMPQ 226

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-------------------------- 207
           R++ +WN M+  + +    ++ L+++ ++    V                          
Sbjct: 227 RDVVSWNAMIAGYVQNGLIEDALKLFQEIPKRDVITWNTMMAGYAQCGDVENAVELFEKM 286

Query: 208 -EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
            E N +S+  M+ G      + E  +L   +      + N+   NA++  ++  G + EA
Sbjct: 287 PEQNLVSWNTMIAGYVQNGSVKEAFKLFQIM-----PERNVISWNAVISGFAQNGQVEEA 341

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
            K F  +P  +V+SWN++++ Y+      +AL+LF +MQ+   +P+  +F   L   +  
Sbjct: 342 LKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFGQMQMVDMKPNTETFAIVLPACAAL 401

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
             +  G + H  V + GF    V V + L  MY KC  IE +  VF+    +     +++
Sbjct: 402 AVLEQGNEAHEVVIRSGF-QSDVLVGNTLVGMYAKCGSIEDARKVFDRMRQQDSASLSAM 460

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +     +G  K+++E+F  M   G+  D VT    L A
Sbjct: 461 IVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLSA 498



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/395 (25%), Positives = 194/395 (49%), Gaps = 53/395 (13%)

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
           P+ D+  R+      L   +   + N    + ++++ C+  R  E L +   M   G+ P
Sbjct: 7   PVFDIAYRIKARTNTLKTKEGTGKGN----DGLVKSLCKQGRLREALHILQDMVENGIWP 62

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +  ++  +++GC     L + K LH+H+I+  +   +I + N LV  Y   GSL+EA++ 
Sbjct: 63  HSSTYDSLLQGCLNAKSLPDAKLLHAHMIQTQFECQDISLGNKLVSIYVKLGSLVEARRV 122

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           FD +PV +V+SW ++++ YA ++   +AL  F+ MQ    +P+  +F   L   +   ++
Sbjct: 123 FDEMPVKNVVSWTAMIAAYARHEHGQEALGFFYEMQDVGIQPNHFTFASILPACT---DL 179

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
               + H  + K GF+  +V V + L DMY K   IE +  +F+  P R +   N+++  
Sbjct: 180 EVLGEFHDEIVKGGFE-SNVFVGNGLVDMYAKRGCIEFARELFDKMPQRDVVSWNAMIAG 238

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
            + +G I+DA+++F     E    D +T +T                             
Sbjct: 239 YVQNGLIEDALKLF----QEIPKRDVITWNT----------------------------- 265

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
                   +M  Y++CG +E + ++FEK+P  N+V + +++ GY +NG  +EA  + ++M
Sbjct: 266 --------MMAGYAQCGDVENAVELFEKMPEQNLVSWNTMIAGYVQNGSVKEAFKLFQIM 317

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +R +I    ++  V++G   +G V+E   +F +M
Sbjct: 318 PERNVI----SWNAVISGFAQNGQVEEALKLFKTM 348



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 124/248 (50%), Gaps = 1/248 (0%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N+ S N  I  F ++G +  A KLF  MP  ++V++N +I+G  +    + AL L+ 
Sbjct: 318 PERNVISWNAVISGFAQNGQVEEALKLFKTMPECNVVSWNAMIAGYSQNGQAENALKLFG 377

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M    +K +  TF+ VL  C+      +G + H  V+  GF  ++ +G+ LV +Y + G
Sbjct: 378 QMQMVDMKPNTETFAIVLPACAALAVLEQGNEAHEVVIRSGFQSDVLVGNTLVGMYAKCG 437

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD + +++ A+ + M+  +       E L ++ +M+  G++P+ ++F  ++ 
Sbjct: 438 SIEDARKVFDRMRQQDSASLSAMIVGYAINGCSKESLELFEQMQFTGLKPDRVTFVGVLS 497

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DV 278
            C    L+DEG+Q    + +   +   +     ++D     G   EA    + +P+  D 
Sbjct: 498 ACCHAGLVDEGRQYFDIMTRFYHITPAMEHYGCMIDLLGRAGCFDEANDLINKMPIKPDA 557

Query: 279 ISWNSIVS 286
             W S++S
Sbjct: 558 DMWGSLLS 565


>gi|356567156|ref|XP_003551787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 185/667 (27%), Positives = 341/667 (51%), Gaps = 13/667 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC---QPNPQLNIYSSNRTIDDFVKS 57
           M S K+     T   +   C+ I      L L  +C   Q   + ++ + +  +D + K 
Sbjct: 129 MRSLKIPHDYATFAVILKACSGIEDYG--LGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
             L+ A ++F EMP R++V ++ +I+G  +     + L L+ +M+  G+  S ST++SV 
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C+    +  G Q+H   L   F  +  IG+  +D+Y +      A  +F+ LP     
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPNPPRQ 306

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           ++N ++  +    +  + L ++  ++   +  + +S    +  CS+     EG QLH   
Sbjct: 307 SYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGIQLHGLA 366

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K G +  NI VAN ++D Y  CG+L+EA   F+ +   D +SWN+I++ +   + I   
Sbjct: 367 VKCG-LGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSAL 355
           L LF  M      P   ++   +   +    + +G +IHG + K  +G D     V SAL
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDW---FVGSAL 482

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMYGKC ++  +  +      ++    NS+++        ++A   F  M++ GI  D 
Sbjct: 483 VDMYGKCGMLMEAEKIHARLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDN 542

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T +T L   +  A+  LG  + +H   +K    S++ ++ +L+D YS+CG+++ S  +F
Sbjct: 543 YTYATVLDVCANMATIELG--KQIHAQILKLQLHSDVYIASTLVDMYSKCGNMQDSRLMF 600

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           EK P  + V +++++  Y+ +G+G +A+++ E M    + P+   F+ VL  C H G V 
Sbjct: 601 EKAPKRDYVTWSAMICAYAYHGLGEKAINLFEEMQLLNVKPNHTIFISVLRACAHMGYVD 660

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           +G   F  M S YG+D   +HYSCM+D+LGR+G +++A +L++  P   D ++W +LL +
Sbjct: 661 KGLHYFQKMLSHYGLDPQMEHYSCMVDLLGRSGQVNEALKLIESMPFEADDVIWRTLLSN 720

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           C++ GN  +  +  N L++L+P D + Y  ++N Y+ +G +    ++R      KL ++ 
Sbjct: 721 CKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYAIVGMWGEVAKMRSIMKNCKLKKEP 780

Query: 656 GHSLIEV 662
           G S IEV
Sbjct: 781 GCSWIEV 787



 Score =  223 bits (568), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 159/612 (25%), Positives = 291/612 (47%), Gaps = 27/612 (4%)

Query: 21  TSIVP--LSSSLLLDSYCQPN------------PQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           T  VP    ++ LL  YC+ +            PQ ++ S N  I  +   G++  A+ L
Sbjct: 35  TGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRMPQRDVISWNTLIFGYAGIGNMGFAQSL 94

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD MP RD+V++N L+S        ++++ ++  M S  I    +TF+ +L  CS    Y
Sbjct: 95  FDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFAVILKACSGIEDY 154

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G+Q+HC  + +GF  ++  GS LVD+Y +      A  +F E+PERNL  W+ ++  +
Sbjct: 155 GLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDDAFRVFREMPERNLVCWSAVIAGY 214

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +  R  E L+++  M   G+  +  ++  + R C+       G QLH H +K  +   +
Sbjct: 215 VQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDS 274

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           I +  A +D Y+ C  + +A K F+ +P     S+N+I+  YA  D    AL++F  +Q 
Sbjct: 275 I-IGTATLDMYAKCERMFDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALDIFQSLQR 333

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNV 364
                   S    L   S       G Q+HG   K  LGF+   + V + + DMYGKC  
Sbjct: 334 NNLGFDEISLSGALTACSVIKRHLEGIQLHGLAVKCGLGFN---ICVANTILDMYGKCGA 390

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +  +FE    R     N+++ +   +  I   + +F  M+   +  D+ T  + +KA
Sbjct: 391 LMEACLIFEEMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKA 450

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +   + N G+   +H   IKSG   +  V  +L+D Y +CG +  + ++  ++     V
Sbjct: 451 CAGQQALNYGT--EIHGRIIKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHARLEEKTTV 508

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + SI++G+S       A      M++ G+IPD  T+  VL  C +   ++ G+ +   +
Sbjct: 509 SWNSIISGFSSQKQSENAQRYFSQMLEMGIIPDNYTYATVLDVCANMATIELGKQIHAQI 568

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
             +  + +D    S ++DM  + G +  +  + ++ P   D + WS+++ +   HG   +
Sbjct: 569 LKL-QLHSDVYIASTLVDMYSKCGNMQDSRLMFEKAP-KRDYVTWSAMICAYAYHG---L 623

Query: 605 GRRVANILMELE 616
           G +  N+  E++
Sbjct: 624 GEKAINLFEEMQ 635



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 133/577 (23%), Positives = 261/577 (45%), Gaps = 40/577 (6%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY---MRMGPSVRALD-- 166
           TFS +L  CSN      G Q+H +++  GF   +Y+ + L+  Y    +M  + +  D  
Sbjct: 8   TFSHILQKCSNLKALNPGKQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKVFDRM 67

Query: 167 --------------------------LFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
                                     LFD +PER++ +WN +L  +       + + ++ 
Sbjct: 68  PQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M++  +  +  +F  +++ CS       G Q+H   I++G+ + ++   +ALVD YS C
Sbjct: 128 RMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFEN-DVVTGSALVDMYSKC 186

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
             L +A + F  +P  +++ W+++++ Y   D   + L+LF  M       S  ++    
Sbjct: 187 KKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
              +       G Q+HG+  K  F + S+ + +A  DMY KC  +  +  VF + P    
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSI-IGTATLDMYAKCERMFDAWKVFNTLPNPPR 305

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
           +  N+++           A+++F  +    +G DE++LS  L A SV      G    LH
Sbjct: 306 QSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEGI--QLH 363

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             A+K G   NI V+ +++D Y +CG +  +  +FE++   + V + +I+  + +N    
Sbjct: 364 GLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERRDAVSWNAIIAAHEQNEEIV 423

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSC 559
           + L +   M++  + PD  T+  V+  C     +  G  +    +KS  G+D      S 
Sbjct: 424 KTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGTEIHGRIIKSGMGLDWFVG--SA 481

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV- 618
           ++DM G+ G+L +AE++  +       + W+S++            +R  + ++E+  + 
Sbjct: 482 LVDMYGKCGMLMEAEKIHARLE-EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGIIP 540

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           D   Y+ V +  + +   E+  QI    L  +L  D+
Sbjct: 541 DNYTYATVLDVCANMATIELGKQIHAQILKLQLHSDV 577



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 115/454 (25%), Positives = 219/454 (48%), Gaps = 49/454 (10%)

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           L+F ++++ CS    L+ GKQ+H+ +I  G+V   I+VAN L+ FY     +  A K FD
Sbjct: 7   LTFSHILQKCSNLKALNPGKQVHTQMIVTGFVPT-IYVANCLLQFYCKSSKMNYAFKVFD 65

Query: 272 FIPVDDVISWNSIVSIYADY------DLIFDAL-------------------------EL 300
            +P  DVISWN+++  YA          +FD++                         E+
Sbjct: 66  RMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSIEI 125

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F RM+  +      +F   L   S   +   G Q+H    ++GF++  V   SAL DMY 
Sbjct: 126 FVRMRSLKIPHDYATFAVILKACSGIEDYGLGLQVHCLAIQMGFENDVV-TGSALVDMYS 184

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           KC  ++ +  VF   P R+L C ++++   + +    + +++F  M+  G+G+ + T ++
Sbjct: 185 KCKKLDDAFRVFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYAS 244

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
             ++ +  ++  LG+   LH  A+KS F  +  +  + +D Y++C  +  + +VF  +P+
Sbjct: 245 VFRSCAGLSAFKLGT--QLHGHALKSDFAYDSIIGTATLDMYAKCERMFDAWKVFNTLPN 302

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           P    + +I+ GY+R   G +ALD+ + + +  L  D+++    L  C+      EG + 
Sbjct: 303 PPRQSYNAIIVGYARQDQGLKALDIFQSLQRNNLGFDEISLSGALTACSVIKRHLEG-IQ 361

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA----EELLQQTPGGGDCMMWSSLLRSC 596
            + +    G+  +    + ++DM G+ G L +A    EE+ ++     D + W++++ + 
Sbjct: 362 LHGLAVKCGLGFNICVANTILDMYGKCGALMEACLIFEEMERR-----DAVSWNAII-AA 415

Query: 597 RVHGNEIIGRR---VANILMELEPVDFAVYSQVS 627
                EI+      V+ +   +EP DF   S V 
Sbjct: 416 HEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVK 449



 Score = 46.6 bits (109), Expect = 0.042,   Method: Compositional matrix adjust.
 Identities = 54/273 (19%), Positives = 114/273 (41%), Gaps = 38/273 (13%)

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           ++T S  L+  S   + N G  + +H   I +GF   I V+  L+  Y +   +  + +V
Sbjct: 6   KLTFSHILQKCSNLKALNPG--KQVHTQMIVTGFVPTIYVANCLLQFYCKSSKMNYAFKV 63

Query: 475 FEKIPSPNVVCFTSIMNGYS-------------------------------RNGMGREAL 503
           F+++P  +V+ + +++ GY+                                NG+ R+++
Sbjct: 64  FDRMPQRDVISWNTLIFGYAGIGNMGFAQSLFDSMPERDVVSWNSLLSCYLHNGVNRKSI 123

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMID 562
           ++   M    +  D  TF  +L  C  SG+   G  L  + +    G + D    S ++D
Sbjct: 124 EIFVRMRSLKIPHDYATFAVILKAC--SGIEDYGLGLQVHCLAIQMGFENDVVTGSALVD 181

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFA 621
           M  +   LD A  + ++ P   + + WS+++     +   I G ++   ++++   V  +
Sbjct: 182 MYSKCKKLDDAFRVFREMP-ERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQS 240

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
            Y+ V    + +  F++  Q+   AL      D
Sbjct: 241 TYASVFRSCAGLSAFKLGTQLHGHALKSDFAYD 273


>gi|449523792|ref|XP_004168907.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  300 bits (769), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 170/617 (27%), Positives = 327/617 (52%), Gaps = 11/617 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           F K G +N A ++F+ +  +    Y+ ++ G  K    + AL     M    +K     F
Sbjct: 91  FSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF 150

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           + +L VC +      G +IH ++++  F  N++  + +V++Y +      A  +FD +PE
Sbjct: 151 TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPE 210

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+L +WN ++  F +     + L +  +M+ EG  P+ ++   ++   +   LL  GK +
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H + I+ G+  + + ++ AL D YS CGS+  A+  FD +    V+SWNS++  Y     
Sbjct: 271 HGYAIRAGFAKL-VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
              A+ +F +M      P+  + +E L+  +  G++  GK +H +V +L      + V +
Sbjct: 330 PEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLG-SDISVMN 388

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           +L  MY KC  ++ +  +F +  GR+    N+++     +G + +A+  F  M   G+  
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448

Query: 414 DEVTLSTTLKAL---SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           D  T+ + + AL   SV+  A     + +H   I+S  + NI V+ +L+D YS+CG I +
Sbjct: 449 DSFTMVSVIPALAELSVTRHA-----KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHM 503

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + ++F+ I   +V+ + ++++GY  +G+GR ALD+ + M +  + P+ +T+L V++ C+H
Sbjct: 504 ARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSH 563

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG+V EG   F SMK  YG++    HY  M+D+LGRAG + +A + ++  P      ++ 
Sbjct: 564 SGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYG 623

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           ++L +C++H N  +G + A  L EL P +   +  ++N Y+   ++    ++R+T   + 
Sbjct: 624 AMLGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKG 683

Query: 651 LTRDIGHSLIEV-NSCH 666
           L +  G S++E+ N  H
Sbjct: 684 LKKTPGCSVVELRNEVH 700



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 240/488 (49%), Gaps = 22/488 (4%)

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + LV L+ + G    A  +F+ + ++  A ++ ML+ + + S  +  L    +M+ + V+
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P   +F Y+++ C     L  GK++H  +I   +   N+F    +V+ Y+ C  + +A K
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFA-ANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +P  D++SWN+I++ ++       ALEL  RMQ   +RP   + V  L  A+  G 
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  GK IHGY  + GF    V++ +AL DMY KC  +E++  +F+    +++   NS+M 
Sbjct: 264 LMVGKSIHGYAIRAGFAK-LVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIK 445
             + +G  + A+ +F  M++EGI    VT+   L      A A+LG     + +H    +
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALH-----ACADLGDLERGKFVHKFVDQ 377

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
               S+I+V  SL+  YS+C  ++++  +F  +     V + +++ GY++NG   EAL+ 
Sbjct: 378 LNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNC 437

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDML 564
              M   G+ PD  T + V+       + +  + +    ++S   +D +    + ++DM 
Sbjct: 438 FSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC--LDKNIFVTTALVDMY 495

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL-----EPVD 619
            + G +  A +L          + W++++     HG   +GR   ++  ++     EP D
Sbjct: 496 SKCGAIHMARKLFDMI-SDRHVITWNAMIDGYGTHG---LGRAALDLFDKMKKGAVEPND 551

Query: 620 FAVYSQVS 627
               S +S
Sbjct: 552 ITYLSVIS 559



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 218/451 (48%), Gaps = 8/451 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+++    ++ + K   ++ A K+FD MP RD+V++N +I+G  +    K+AL L   M 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G +  + T  +VL   ++ G    G  IH   +  GF   + I + L D+Y + G   
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD + ++ + +WN M+  + +   P++ + ++ KM  EG++P G++    +  C+
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ GK +H  V +L  +  +I V N+L+  YS C  +  A   F+ +     +SWN
Sbjct: 361 DLGDLERGKFVHKFVDQLN-LGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWN 419

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  YA    + +AL  F  M+    +P   + V  +   +        K IHG + + 
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS 479

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D  ++ V +AL DMY KC  I  +  +F+    R +   N+++      G  + A+++
Sbjct: 480 CLDK-NIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDL 538

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS--GFESNIAVSCSLMD 460
           F  M    +  +++T  + + A S S   + G   L H  ++K   G E ++    +++D
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACSHSGLVDEG---LRHFKSMKQDYGLEPSMDHYGAMVD 595

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
              R G I+ +    E +P SP +  + +++
Sbjct: 596 LLGRAGRIKEAWDFIENMPISPGITVYGAML 626



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 4/274 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   TI      C  +  L     +  +  Q N   +I   N  I  + K   
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A  +F+ +  R  V++N +I G  +     +AL  + EM S G+K  + T  SV+  
Sbjct: 400 VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            +          IH  ++      N+++ + LVD+Y + G    A  LFD + +R++ TW
Sbjct: 460 LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITW 519

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  +         L +++KMK   VEPN +++  ++  CS   L+DEG +    + +
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++ ++    A+VD     G + EA   +DFI
Sbjct: 580 DYGLEPSMDHYGAMVDLLGRAGRIKEA---WDFI 610



 Score = 39.3 bits (90), Expect = 7.1,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 14/156 (8%)

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           IK+G  +       L+  +S+ G I  + +VFE I       + +++ GY++N     AL
Sbjct: 73  IKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETAL 132

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK-----EGQLVFNSMKS-VYGIDADRQHY 557
             L  M    + P    F  +L  C  +  +K      GQL+ NS  + V+ +       
Sbjct: 133 AFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAM------- 185

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           + +++M  +   +D A ++  + P   D + W++++
Sbjct: 186 TGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTII 220


>gi|224119336|ref|XP_002331286.1| predicted protein [Populus trichocarpa]
 gi|222873711|gb|EEF10842.1| predicted protein [Populus trichocarpa]
          Length = 897

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 173/612 (28%), Positives = 320/612 (52%), Gaps = 8/612 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K   L+ +  +F E+P ++ V+++ +I+GC +     + L L+ EM   G+  S S +
Sbjct: 226 YAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIY 285

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +S+   C+       G ++H   L   FG ++ +G+  +D+Y + G    A  +   +P+
Sbjct: 286 ASLFRSCAALSALRLGKELHSHALKSAFGSDIIVGTATLDMYAKCGRMADAQKVLSSMPK 345

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            +L ++N ++  +    R  + L+ +  +   G+  + ++    +  C+      EG+Q+
Sbjct: 346 CSLQSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACASIRGDLEGRQV 405

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H   +K   +  NI VANA++D Y  C +L EA   FD +   D +SWN+I++       
Sbjct: 406 HGLAVKSISMS-NICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGN 464

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHV 351
             + L  F  M   R  P   ++   L   +    +  G +IH  + K  +GFD     V
Sbjct: 465 EEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDS---FV 521

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +AL DMY KC +IE +  + +    +++   N++++        +DA + F  M++ G+
Sbjct: 522 GAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGV 581

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D  T +  L   +  A+  LG  + +H   IK   +S++ +  +L+D YS+CG+++ S
Sbjct: 582 NPDNFTYAAVLDTCANLATVGLG--KQIHAQIIKQELQSDVYICSTLVDMYSKCGNMQDS 639

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             +FEK P+ + V + +++ GY+ +G+G EAL + E M    + P+  TF+ VL  C H 
Sbjct: 640 QLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRACAHM 699

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V +G   F+ M S YG+D   +HYSCM+D+LGR+G +D+A  L+Q+ P   D ++W +
Sbjct: 700 GLVDKGLHYFDVMLSEYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADAVIWRN 759

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL  C++HGN  +  +    L++L+P D +    +SN Y++ G +    ++R+     KL
Sbjct: 760 LLSVCKIHGNVEVAEKATRALLQLDPQDSSACVLLSNIYADAGMWGNVSEMRKMMRHNKL 819

Query: 652 TRDIGHSLIEVN 663
            ++ G S IE+ 
Sbjct: 820 KKEPGCSWIELK 831



 Score =  218 bits (555), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 155/579 (26%), Positives = 283/579 (48%), Gaps = 19/579 (3%)

Query: 30  LLLDSYCQPNPQL---NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCG 86
           L LD  C+   ++   ++ S N  I  +   G ++ A+K F EMP RD+V++N +ISG  
Sbjct: 98  LYLDYACKVFDKMYLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFL 157

Query: 87  KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY 146
           +    ++++ ++ EM   G+    ++ + VL  C        G+Q+H  V+  GF  ++ 
Sbjct: 158 QNGECRKSIDVFLEMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGFDCDVV 217

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
            GS L+ +Y +      +L +F ELPE+N  +W+ M+    +  R  E L ++ +M+  G
Sbjct: 218 TGSALLGMYAKCKRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVG 277

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           V  +   +  + R C+    L  GK+LHSH +K  +   +I V  A +D Y+ CG + +A
Sbjct: 278 VGVSQSIYASLFRSCAALSALRLGKELHSHALKSAF-GSDIIVGTATLDMYAKCGRMADA 336

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF-----LN 321
           +K    +P   + S+N+I+  YA  D  F AL+ F   QL  K  +   F E      LN
Sbjct: 337 QKVLSSMPKCSLQSYNAIIVGYARSDRGFQALKSF---QLLLK--TGLGFDEITLSGALN 391

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
             +       G+Q+HG   K      ++ V +A+ DMYGKC  +  +  +F+    R   
Sbjct: 392 ACASIRGDLEGRQVHGLAVK-SISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAV 450

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             N+++ +   +GN ++ +  F  M+   +  D+ T  + LKA +   + N G    +H 
Sbjct: 451 SWNAIIAACEQNGNEEETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTG--MEIHT 508

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             IKSG   +  V  +L+D Y +CG IE + ++ ++     +V + +I++G+S      +
Sbjct: 509 RIIKSGMGFDSFVGAALVDMYCKCGMIEKADKIHDRTEQKTMVSWNAIISGFSLLQQSED 568

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A      M++ G+ PD  T+  VL  C +   V  G+ +   +     + +D    S ++
Sbjct: 569 AHKFFSRMLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIK-QELQSDVYICSTLV 627

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           DM  + G +  ++ + ++ P   D + W+++L     HG
Sbjct: 628 DMYSKCGNMQDSQLMFEKAP-NRDFVTWNAMLCGYAHHG 665



 Score =  162 bits (409), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 133/578 (23%), Positives = 255/578 (44%), Gaps = 42/578 (7%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR-------------- 157
           TFS +   CS       G Q H R++  GF    ++ + L+ +Y++              
Sbjct: 51  TFSHIYQECSKQNSLNPGKQAHARMIFCGFEPTTFVSNCLMQMYIKCLYLDYACKVFDKM 110

Query: 158 -----------------MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
                             G    A   F E+PER++ +WN ++  F +     + + ++ 
Sbjct: 111 YLRDVVSYNSIISGYASCGEMDIARKFFYEMPERDVVSWNSVISGFLQNGECRKSIDVFL 170

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M   GV  +  S   +++ C      D G Q+H  V+K G+ D ++   +AL+  Y+ C
Sbjct: 171 EMGRCGVGFDRASLAVVLKACGALEECDMGVQVHGLVVKFGF-DCDVVTGSALLGMYAKC 229

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
             L ++   F  +P  + +SW+++++     D   + LELF  MQ      S   +    
Sbjct: 230 KRLDDSLSVFSELPEKNWVSWSAMIAGCVQNDRNVEGLELFKEMQGVGVGVSQSIYASLF 289

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
              +    +  GK++H +  K  F    + V +A  DMY KC  +  +  V  S P  SL
Sbjct: 290 RSCAALSALRLGKELHSHALKSAFG-SDIIVGTATLDMYAKCGRMADAQKVLSSMPKCSL 348

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
           +  N+++     S     A++ F  ++  G+G DE+TLS  L A + S   +L   R +H
Sbjct: 349 QSYNAIIVGYARSDRGFQALKSFQLLLKTGLGFDEITLSGALNACA-SIRGDLEG-RQVH 406

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             A+KS   SNI V+ +++D Y +C  +  +  +F+ +   + V + +I+    +NG   
Sbjct: 407 GLAVKSISMSNICVANAILDMYGKCKALAEASDLFDMMERRDAVSWNAIIAACEQNGNEE 466

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSC 559
           E L     MI   + PD  T+  VL  C     +  G  +    +KS  G D+     + 
Sbjct: 467 ETLAHFASMIHSRMEPDDFTYGSVLKACAGRQALNTGMEIHTRIIKSGMGFDSFVG--AA 524

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL--EP 617
           ++DM  + G+++KA+++  +T      + W++++    +        +  + ++E+   P
Sbjct: 525 LVDMYCKCGMIEKADKIHDRTE-QKTMVSWNAIISGFSLLQQSEDAHKFFSRMLEMGVNP 583

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
            +F  Y+ V +  + +    +  QI    + ++L  D+
Sbjct: 584 DNF-TYAAVLDTCANLATVGLGKQIHAQIIKQELQSDV 620



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 72/301 (23%), Positives = 137/301 (45%), Gaps = 25/301 (8%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T   +  TC ++  +     +     +   Q ++Y  +  +D + K G+
Sbjct: 576 MLEMGVNPDNFTYAAVLDTCANLATVGLGKQIHAQIIKQELQSDVYICSTLVDMYSKCGN 635

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  ++ +F++ P RD VT+N ++ G       ++AL L++ M    +K + +TF SVL  
Sbjct: 636 MQDSQLMFEKAPNRDFVTWNAMLCGYAHHGLGEEALKLFESMQLVNVKPNHATFVSVLRA 695

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ERNL 176
           C++ G   +G+     +LS  +GL+      S +VD+  R G    AL+L  ++P E + 
Sbjct: 696 CAHMGLVDKGLHYFDVMLS-EYGLDPQSEHYSCMVDILGRSGRIDEALNLVQKMPFEADA 754

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG--CSIGML--LDEGKQ 232
             W  +L + C++    EV     +   + ++P   S C ++       GM   + E ++
Sbjct: 755 VIWRNLL-SVCKIHGNVEVAEKATRALLQ-LDPQDSSACVLLSNIYADAGMWGNVSEMRK 812

Query: 233 L--HSHVIK---LGWVDVNIFVANALV---------DFYSACGSLIEAKKSFDFIPVDDV 278
           +  H+ + K     W+++   V   LV         + Y   G LI   +S  +IP  DV
Sbjct: 813 MMRHNKLKKEPGCSWIELKDEVHAFLVGDKGHPRDEEIYEKLGVLIGEMQSVGYIPDCDV 872

Query: 279 I 279
           +
Sbjct: 873 L 873


>gi|449521571|ref|XP_004167803.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 817

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 202/636 (31%), Positives = 336/636 (52%), Gaps = 17/636 (2%)

Query: 39  NPQLNIYS--SNRTIDDFVKSGH--LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           N  LN+YS  S+ T D  + SG+   +  +K+FD M  R +V +N LI+   +     +A
Sbjct: 135 NSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEA 194

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG--FGLNLYIGSPLV 152
           +  +  M+  GIK S  +F +V    S+ G +     +H  ++ LG  +  +LY+ S  +
Sbjct: 195 VKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAI 254

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY-NKMKAEGVEPNG 211
            +Y  +G    A  +FD   ERN   WN M+ AF + +   E ++++   +++E    + 
Sbjct: 255 FMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDE 314

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++    +   S     +  +QLH+ VIK   V   + V NAL+  YS C S+  + K FD
Sbjct: 315 VTLLSAISAASHLQKFELAEQLHAFVIKNVAV-TQVCVMNALIAMYSRCNSIDTSFKIFD 373

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  DV+SWN+++S +    L  +AL LF+ M+         +    L+ AS   N   
Sbjct: 374 NMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDI 433

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA--PGRSLECCNSLMTS 389
           GKQ HGY+ + G     +   S L DMY K  +IE++  VFE +    R     NS+M+ 
Sbjct: 434 GKQTHGYLLRNGIQFEGM--DSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 491

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
              +G +  A  +   M+D+ +  + VTL++ L A + S   + G  + LH  +I++  +
Sbjct: 492 YTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWG--KQLHGFSIRNDLD 549

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            N+ V+ +L+D YS+ G I  +  VF K    ++V +++++ GY ++GMG  AL M   M
Sbjct: 550 QNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRM 609

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
            + G+ PD VT + VL+ C+++G+V EG  +F SM++VY I    +H+ C+ DMLGRAG 
Sbjct: 610 QKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGR 669

Query: 570 LDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV-- 626
           +DKA E +      G+ M +W SLL +CR+H    +G+ VA  L+E+E ++      V  
Sbjct: 670 VDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLL 729

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           SN Y+E   +E    +R+    R L ++ G S IE+
Sbjct: 730 SNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEI 765



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/553 (25%), Positives = 269/553 (48%), Gaps = 42/553 (7%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISG--CGKFRHPKQALYLYDEMVSHG--IKESAS 111
           + G L+ A++LFD +P    V +N +I G  C  F  P +AL  Y  M S    +K  + 
Sbjct: 40  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNF--PDEALLFYSNMKSSSPQVKCDSY 97

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM---------RMGPSV 162
           T+SSVL  C++      G  +H   L      +  + + L+++Y          +M    
Sbjct: 98  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 157

Query: 163 RALDL----FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
              DL    FD + +R +  WN ++  +    R  E ++ ++ M   G++P+ +SF  + 
Sbjct: 158 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 217

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVN-IFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
              S          +H  ++KLG   VN ++V ++ +  Y+  G L  AKK FD     +
Sbjct: 218 PAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERN 277

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVEFLNFASRTGNVYFGKQI 335
              WN+++S +   +   + ++LFF+  +  +  +I   + +  ++ AS        +Q+
Sbjct: 278 TEVWNTMISAFVQNNFSLEGIQLFFQ-AVESEDAAIDEVTLLSAISAASHLQKFELAEQL 336

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H +V K       V V +AL  MY +CN I++S  +F++ P + +   N+++++ + +G 
Sbjct: 337 HAFVIK-NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGL 395

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             +A+ +F  M  + + +D VT++  L A S   + ++G  +  H   +++G +    + 
Sbjct: 396 NDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIG--KQTHGYLLRNGIQFE-GMD 452

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
             L+D Y++ G IE +  VFEK  S   +   + S+M+GY++NG+  +A  +L  M+ + 
Sbjct: 453 SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQK 512

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI----DADRQHY--SCMIDMLGRA 567
           ++P+ VT   +L  CN SG +  G       K ++G     D D+  +  + +IDM  ++
Sbjct: 513 VMPNVVTLASILPACNPSGYIDWG-------KQLHGFSIRNDLDQNVFVATALIDMYSKS 565

Query: 568 GILDKAEELLQQT 580
           G +  AE +  + 
Sbjct: 566 GSIAHAENVFSKA 578



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 230/463 (49%), Gaps = 39/463 (8%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY--MVRGC 221
           A  LFD LP  +   WN ++      + PDE L  Y+ MK+   +    S+ Y  +++ C
Sbjct: 47  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 106

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE-------------AKK 268
           +    L  GK +H+H ++   ++ +  V N+L++ YS C S                 +K
Sbjct: 107 ADTRNLVVGKAVHAHFLRC-LMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRK 165

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +    V++WN++++ Y   +   +A++ F  M     +PS  SFV      S  G+
Sbjct: 166 VFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGD 225

Query: 329 VYFGKQIHGYVTKLGFDH-GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
                 +HG + KLG ++   ++V S+   MY +   +E +  VF++   R+ E  N+++
Sbjct: 226 FKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMI 285

Query: 388 TSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCA 443
           ++ + +    + +++F   V+ E   +DEVTL +     ++SA+++L    L   LH   
Sbjct: 286 SAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLS-----AISAASHLQKFELAEQLHAFV 340

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           IK+   + + V  +L+  YSRC  I+ S ++F+ +P  +VV + ++++ + +NG+  EAL
Sbjct: 341 IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEAL 400

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCN-----HSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
            +   M ++ L+ D VT   +L+  +       G    G L+ N ++   G+D      S
Sbjct: 401 MLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ-FEGMD------S 453

Query: 559 CMIDMLGRAGILDKAEELLQQT-PGGGDCMMWSSLLRSCRVHG 600
            +IDM  ++G+++ A+ + +++     D   W+S++     +G
Sbjct: 454 YLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNG 496



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 42/133 (31%), Positives = 69/133 (51%), Gaps = 1/133 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           ML  K++P V T+ ++ P C     +     L  +   N    N++ +   ID + KSG 
Sbjct: 508 MLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGS 567

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ +F +   + +VTY+ +I G G+    + AL+++  M   GI+  A T  +VLS 
Sbjct: 568 IAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSA 627

Query: 120 CSNAGFYTEGIQI 132
           CS AG   EG+QI
Sbjct: 628 CSYAGLVDEGLQI 640


>gi|297829948|ref|XP_002882856.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328696|gb|EFH59115.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 753

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 181/615 (29%), Positives = 325/615 (52%), Gaps = 12/615 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K   L  A++LFD MP R+++++N LISG  +    +QA+ L+ E     +K    T+
Sbjct: 93  YCKCRELGFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTY 152

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +  L  C        G  +H  V+  G    +++ + L+D+Y + G   +A+ LFD   E
Sbjct: 153 AGALGFCGERCDLDFGKLLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCNE 212

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM---LLDEG 230
           R+  +WN ++  +  +   +E L +  KM   G++    +   +++ C I +   L+++G
Sbjct: 213 RDQVSWNSLISGYVRVGAAEEPLNLLAKMHRAGLKLTTYALGSVLKACCINLNEGLMEKG 272

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +H +  KLG ++ +I V  AL+D Y+  GSL EA K F  +P  +V+++N+++S +  
Sbjct: 273 MAIHCYAAKLG-MEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQ 331

Query: 291 YDLIFD-----ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
            D I D     A +LF  MQ     PS  +F   L   S    + +G+QIH  + K  F 
Sbjct: 332 MDDITDEASSEAFKLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQ 391

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
                + SAL ++Y      E  +  F S   + +    S++   + +  ++ A ++F  
Sbjct: 392 SDEF-IGSALIELYALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQ 450

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           +    I  +E T+S  + A +  A+  L S   +   AIKSG ++  +V  S +  Y++ 
Sbjct: 451 LFSSPIRPEEYTVSLMMSACADFAA--LSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKS 508

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G++ L+++VF ++ +P+V  ++++++  +++G   +AL++ E M  RG+ P++  FL VL
Sbjct: 509 GNMPLANKVFIEVQNPDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVL 568

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             C H G+V  G   F +MK+ YGI+ + +H++C+ D+LGR G L  AE L+  +     
Sbjct: 569 IACCHGGLVTHGVNYFQTMKNSYGINPNEKHFTCLADLLGRTGRLSDAENLILSSGFQDH 628

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
            +MW +LL SCRV+ + +IG+RVA  LMELEP     Y  + N Y++ G    + ++RE 
Sbjct: 629 PVMWRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVREL 688

Query: 646 ALARKLTRDIGHSLI 660
              R + ++   S I
Sbjct: 689 MRDRGVKKEPALSWI 703



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 78/285 (27%), Positives = 142/285 (49%), Gaps = 6/285 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF-----RHPKQAL 95
           + +I      +D + K+G L  A KLF  MPA+++VTYN +ISG  +          +A 
Sbjct: 285 EFDIVVRTALLDMYAKNGSLKEAIKLFSLMPAKNVVTYNAMISGFLQMDDITDEASSEAF 344

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            L+ EM   G++ S STFS VL  CS A     G QIH  +    F  + +IGS L++LY
Sbjct: 345 KLFMEMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELY 404

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
             MG +   +  F    ++++A+W  ++    +  + +    ++ ++ +  + P   +  
Sbjct: 405 ALMGSTEDGMQCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVS 464

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            M+  C+    L  G+Q+  + IK G +D    V  + +  Y+  G++  A K F  +  
Sbjct: 465 LMMSACADFAALSSGEQIQGYAIKSG-IDAYTSVKTSSISMYAKSGNMPLANKVFIEVQN 523

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
            DV ++++++S  A +    DAL +F  M+    +P+ ++F+  L
Sbjct: 524 PDVATYSAMISSLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVL 568



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 44/226 (19%), Positives = 97/226 (42%), Gaps = 1/226 (0%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L P   T + +   C++   L     + +  C+ N Q + +  +  I+ +   G      
Sbjct: 355 LEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGM 414

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           + F     +D+ ++  +I    +    + A  L+ ++ S  I+    T S ++S C++  
Sbjct: 415 QCFASTSKQDIASWTSIIDCHVQNEQLESAFDLFRQLFSSPIRPEEYTVSLMMSACADFA 474

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
             + G QI    +  G      + +  + +Y + G    A  +F E+   ++AT++ M+ 
Sbjct: 475 ALSSGEQIQGYAIKSGIDAYTSVKTSSISMYAKSGNMPLANKVFIEVQNPDVATYSAMIS 534

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  +     + L ++  MK  G++PN  +F  ++  C  G L+  G
Sbjct: 535 SLAQHGSAHDALNIFESMKTRGIKPNQQAFLGVLIACCHGGLVTHG 580



 Score = 58.2 bits (139), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/185 (24%), Positives = 88/185 (47%), Gaps = 4/185 (2%)

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           +   LD        +  + S S  LG  +L H   +KS     + +  +L++ Y +C  +
Sbjct: 42  KNTALDSEAYKKLFQTAAKSGSLVLG--KLAHGHMVKSSLNPCLYLLNNLLNMYCKCREL 99

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
             + Q+F+++P  N++ F S+++GY++ G   +A+++        L  DK T+   L  C
Sbjct: 100 GFARQLFDRMPERNIISFNSLISGYTQVGFYEQAMELFLEARDDNLKLDKFTYAGALGFC 159

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
                +  G+L+ + +  V G+       + +IDM  + G LD+A  L  +     D + 
Sbjct: 160 GERCDLDFGKLL-HGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRC-NERDQVS 217

Query: 589 WSSLL 593
           W+SL+
Sbjct: 218 WNSLI 222


>gi|15226150|ref|NP_180924.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75101011|sp|P93005.1|PP181_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g33680
 gi|1707007|gb|AAC69139.1| hypothetical protein [Arabidopsis thaliana]
 gi|330253774|gb|AEC08868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 727

 Score =  300 bits (768), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 186/627 (29%), Positives = 330/627 (52%), Gaps = 11/627 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC---GKFRHPKQALYLYDE 100
           I  +N  ++ + K G L  A  +F+ +  +D+V++N LI+G    G        + L+ E
Sbjct: 49  IQHANVLVNFYAKCGKLAKAHSIFNAIICKDVVSWNSLITGYSQNGGISSSYTVMQLFRE 108

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M +  I  +A T + +    S+    T G Q H  V+ +    ++Y+ + LV +Y + G 
Sbjct: 109 MRAQDILPNAYTLAGIFKAESSLQSSTVGRQAHALVVKMSSFGDIYVDTSLVGMYCKAGL 168

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN---KMKAEGVEPNGLSFCYM 217
               L +F  +PERN  TW+ M+  +    R +E ++++N   + K EG + + + F  +
Sbjct: 169 VEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFLREKEEGSDSDYV-FTAV 227

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +   +  + +  G+Q+H   IK G +   + ++NALV  YS C SL EA K FD     +
Sbjct: 228 LSSLAATIYVGLGRQIHCITIKNGLLGF-VALSNALVTMYSKCESLNEACKMFDSSGDRN 286

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            I+W+++V+ Y+      +A++LF RM     +PS  + V  LN  S    +  GKQ+H 
Sbjct: 287 SITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHS 346

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           ++ KLGF+   +   +AL DMY K   +  +   F+    R +    SL++  + + + +
Sbjct: 347 FLLKLGFER-HLFATTALVDMYAKAGCLADARKGFDCLQERDVALWTSLISGYVQNSDNE 405

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+ ++  M   GI  ++ T+++ LKA S  A+  LG  + +H   IK GF   + +  +
Sbjct: 406 EALILYRRMKTAGIIPNDPTMASVLKACSSLATLELG--KQVHGHTIKHGFGLEVPIGSA 463

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L   YS+CG +E  + VF + P+ +VV + ++++G S NG G EAL++ E M+  G+ PD
Sbjct: 464 LSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEALELFEEMLAEGMEPD 523

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            VTF+ +++ C+H G V+ G   FN M    G+D    HY+CM+D+L RAG L +A+E +
Sbjct: 524 DVTFVNIISACSHKGFVERGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFI 583

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           +         +W  LL +C+ HG   +G      LM L   + + Y Q+S  Y+ +G   
Sbjct: 584 ESANIDHGLCLWRILLSACKNHGKCELGVYAGEKLMALGSRESSTYVQLSGIYTALGRMR 643

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
              ++ +   A  +++++G S IE+ +
Sbjct: 644 DVERVWKHMRANGVSKEVGCSWIELKN 670



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 124/456 (27%), Positives = 225/456 (49%), Gaps = 5/456 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +IY     +  + K+G +    K+F  MP R+  T++ ++SG       ++A+ +++  +
Sbjct: 152 DIYVDTSLVGMYCKAGLVEDGLKVFAYMPERNTYTWSTMVSGYATRGRVEEAIKVFNLFL 211

Query: 103 SHGIKESAS--TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
               + S S   F++VLS  +   +   G QIHC  +  G    + + + LV +Y +   
Sbjct: 212 REKEEGSDSDYVFTAVLSSLAATIYVGLGRQIHCITIKNGLLGFVALSNALVTMYSKCES 271

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD   +RN  TW+ M+  + +     E ++++++M + G++P+  +   ++  
Sbjct: 272 LNEACKMFDSSGDRNSITWSAMVTGYSQNGESLEAVKLFSRMFSAGIKPSEYTIVGVLNA 331

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS    L+EGKQLHS ++KLG+ + ++F   ALVD Y+  G L +A+K FD +   DV  
Sbjct: 332 CSDICYLEEGKQLHSFLLKLGF-ERHLFATTALVDMYAKAGCLADARKGFDCLQERDVAL 390

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W S++S Y       +AL L+ RM+     P+  +    L   S    +  GKQ+HG+  
Sbjct: 391 WTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKACSSLATLELGKQVHGHTI 450

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K GF    V + SAL+ MY KC  +E    VF   P + +   N++++ L H+G   +A+
Sbjct: 451 KHGFGL-EVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSWNAMISGLSHNGQGDEAL 509

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           E+F  M+ EG+  D+VT    + A S       G     +  + + G +  +     ++D
Sbjct: 510 ELFEEMLAEGMEPDDVTFVNIISACSHKGFVERG-WFYFNMMSDQIGLDPKVDHYACMVD 568

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
             SR G ++ + +  E     + +C   I+    +N
Sbjct: 569 LLSRAGQLKEAKEFIESANIDHGLCLWRILLSACKN 604



 Score =  122 bits (305), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 133/288 (46%), Gaps = 23/288 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S  + P   TI  +   C+ I  L     L S+  +   + +++++   +D + K+G 
Sbjct: 313 MFSAGIKPSEYTIVGVLNACSDICYLEEGKQLHSFLLKLGFERHLFATTALVDMYAKAGC 372

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+K FD +  RD+  +  LISG  +    ++AL LY  M + GI  +  T +SVL  
Sbjct: 373 LADARKGFDCLQERDVALWTSLISGYVQNSDNEEALILYRRMKTAGIIPNDPTMASVLKA 432

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS+      G Q+H   +  GFGL + IGS L  +Y + G       +F   P +++ +W
Sbjct: 433 CSSLATLELGKQVHGHTIKHGFGLEVPIGSALSTMYSKCGSLEDGNLVFRRTPNKDVVSW 492

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+       + DE L ++ +M AEG+EP+ ++F  ++  CS           H   ++
Sbjct: 493 NAMISGLSHNGQGDEALELFEEMLAEGMEPDDVTFVNIISACS-----------HKGFVE 541

Query: 240 LGWVDVNIFVAN-----------ALVDFYSACGSLIEAKKSFDFIPVD 276
            GW   N+                +VD  S  G L EAK+  +   +D
Sbjct: 542 RGWFYFNMMSDQIGLDPKVDHYACMVDLLSRAGQLKEAKEFIESANID 589



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 45/202 (22%), Positives = 92/202 (45%), Gaps = 12/202 (5%)

Query: 419 STTLKALSV-SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           ST LK L+  S   NL + R +H   I++G  + I  +  L++ Y++CG +  +H +F  
Sbjct: 15  STLLKKLTHHSQQRNLVAGRAVHGQIIRTGASTCIQHANVLVNFYAKCGKLAKAHSIFNA 74

Query: 478 IPSPNVVCFTSIMNGYSRNG---MGREALDMLEVMIQRGLIPDKVTFLCVL---AGCNHS 531
           I   +VV + S++ GYS+NG        + +   M  + ++P+  T   +    +    S
Sbjct: 75  IICKDVVSWNSLITGYSQNGGISSSYTVMQLFREMRAQDILPNAYTLAGIFKAESSLQSS 134

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
            + ++   +   M S   I  D    + ++ M  +AG+++   ++    P   +   WS+
Sbjct: 135 TVGRQAHALVVKMSSFGDIYVD----TSLVGMYCKAGLVEDGLKVFAYMP-ERNTYTWST 189

Query: 592 LLRSCRVHGNEIIGRRVANILM 613
           ++      G      +V N+ +
Sbjct: 190 MVSGYATRGRVEEAIKVFNLFL 211


>gi|449527015|ref|XP_004170508.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/656 (29%), Positives = 340/656 (51%), Gaps = 46/656 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI S+N  I   V+ GHL+ A+ LF+EMP R +V++N++ISG  KF    +AL L  EM 
Sbjct: 36  NIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMH 95

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            + +K + +TFSS+LS+C+++G  +EG Q HC VL  G  +   +GS LV  Y  +    
Sbjct: 96  CNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDIS 155

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK--------------------- 201
            A  +FDEL ++N   W+L+L  + + +  D+ L ++ K                     
Sbjct: 156 GAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEH 215

Query: 202 -----------MKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
                      M+  G VEPN  +F  +VR C     L  GK +H  + K G+   +  V
Sbjct: 216 NCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGF-HFDHSV 274

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            +AL+ FY  C ++  AK  +D +    + + NS++        I DA E+F +++   K
Sbjct: 275 CSALILFYCQCEAIDSAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLR--EK 332

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P   S+   L   + +G +   K++   +T     H +    + +  +Y +   I+ + 
Sbjct: 333 NPV--SYNLMLKGYATSGRIEGSKRLFERMT-----HKTTSSLNTMISVYSRNGEIDKAF 385

Query: 370 AVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            +FES          NS+++  + +   + A++++  M    +     T S   +A +  
Sbjct: 386 KLFESVKSEGDPVTWNSMISGYIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCL 445

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
               LG  + LH  AI+  F+SN+ V  SL+D Y++CG I  +   F  +  PNV  FT+
Sbjct: 446 EYIQLG--QALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCLPNVAAFTA 503

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++NGY  +G+G EA  + + M++  + P+  T L +L+ C+ +GMVKEG  VF+SM+  Y
Sbjct: 504 LINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCY 563

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           G+    +HY+C++D+LGR+G L +AE  ++  P   D ++W +LL +C    +  +G  V
Sbjct: 564 GVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESV 623

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           A  ++ L+P   + Y  +SN Y+++G++   + +R   ++ K+ +  G S I+VN+
Sbjct: 624 AKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRKLMSLKVKKIRGCSWIDVNN 679



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           SNI  +   +  + R GH++L+  +F ++P  +VV +  +++GYS+ G   EAL++   M
Sbjct: 35  SNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEM 94

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
               +  ++ TF  +L+ C HSG   EG+
Sbjct: 95  HCNNVKLNETTFSSLLSICAHSGCSSEGK 123


>gi|449456661|ref|XP_004146067.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Cucumis sativus]
          Length = 793

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 202/636 (31%), Positives = 336/636 (52%), Gaps = 17/636 (2%)

Query: 39  NPQLNIYS--SNRTIDDFVKSGH--LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           N  LN+YS  S+ T D  + SG+   +  +K+FD M  R +V +N LI+   +     +A
Sbjct: 111 NSLLNMYSMCSSTTPDGKMVSGYSRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEA 170

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG--FGLNLYIGSPLV 152
           +  +  M+  GIK S  +F +V    S+ G +     +H  ++ LG  +  +LY+ S  +
Sbjct: 171 VKQFSMMMKIGIKPSPVSFVNVFPAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAI 230

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY-NKMKAEGVEPNG 211
            +Y  +G    A  +FD   ERN   WN M+ AF + +   E ++++   +++E    + 
Sbjct: 231 FMYAELGCLEFAKKVFDNCLERNTEVWNTMISAFVQNNFSLEGIQLFFQAVESEDAAIDE 290

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++    +   S     +  +QLH+ VIK   V   + V NAL+  YS C S+  + K FD
Sbjct: 291 VTLLSAISAASHLQKFELAEQLHAFVIKNVAV-TQVCVMNALIAMYSRCNSIDTSFKIFD 349

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  DV+SWN+++S +    L  +AL LF+ M+         +    L+ AS   N   
Sbjct: 350 NMPEKDVVSWNTMISAFVQNGLNDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDI 409

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG--RSLECCNSLMTS 389
           GKQ HGY+ + G     +   S L DMY K  +IE++  VFE +    R     NS+M+ 
Sbjct: 410 GKQTHGYLLRNGIQFEGM--DSYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSG 467

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
              +G +  A  +   M+D+ +  + VTL++ L A + S   + G  + LH  +I++  +
Sbjct: 468 YTQNGLVDQAFLILRQMLDQKVMPNVVTLASILPACNPSGYIDWG--KQLHGFSIRNDLD 525

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            N+ V+ +L+D YS+ G I  +  VF K    ++V +++++ GY ++GMG  AL M   M
Sbjct: 526 QNVFVATALIDMYSKSGSIAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRM 585

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
            + G+ PD VT + VL+ C+++G+V EG  +F SM++VY I    +H+ C+ DMLGRAG 
Sbjct: 586 QKSGIQPDAVTLVAVLSACSYAGLVDEGLQIFESMRTVYNIQPSTEHFCCVADMLGRAGR 645

Query: 570 LDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV-- 626
           +DKA E +      G+ M +W SLL +CR+H    +G+ VA  L+E+E ++      V  
Sbjct: 646 VDKAYEFVIGLGEKGNVMEIWGSLLAACRIHKQFELGKLVAKKLLEMEKINGKTGYHVLL 705

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           SN Y+E   +E    +R+    R L ++ G S IE+
Sbjct: 706 SNIYAEERNWENVDIVRKQMRERGLKKETGSSWIEI 741



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 140/553 (25%), Positives = 269/553 (48%), Gaps = 42/553 (7%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISG--CGKFRHPKQALYLYDEMVSHG--IKESAS 111
           + G L+ A++LFD +P    V +N +I G  C  F  P +AL  Y  M S    +K  + 
Sbjct: 16  QEGQLHLARQLFDALPRPSTVLWNTIIIGLVCNNF--PDEALLFYSNMKSSSPQVKCDSY 73

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM---------RMGPSV 162
           T+SSVL  C++      G  +H   L      +  + + L+++Y          +M    
Sbjct: 74  TYSSVLKACADTRNLVVGKAVHAHFLRCLMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGY 133

Query: 163 RALDL----FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
              DL    FD + +R +  WN ++  +    R  E ++ ++ M   G++P+ +SF  + 
Sbjct: 134 SRCDLVRKVFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVF 193

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVN-IFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
              S          +H  ++KLG   VN ++V ++ +  Y+  G L  AKK FD     +
Sbjct: 194 PAFSSLGDFKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERN 253

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVEFLNFASRTGNVYFGKQI 335
              WN+++S +   +   + ++LFF+  +  +  +I   + +  ++ AS        +Q+
Sbjct: 254 TEVWNTMISAFVQNNFSLEGIQLFFQ-AVESEDAAIDEVTLLSAISAASHLQKFELAEQL 312

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H +V K       V V +AL  MY +CN I++S  +F++ P + +   N+++++ + +G 
Sbjct: 313 HAFVIK-NVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGL 371

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             +A+ +F  M  + + +D VT++  L A S   + ++G  +  H   +++G +    + 
Sbjct: 372 NDEALMLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIG--KQTHGYLLRNGIQFE-GMD 428

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
             L+D Y++ G IE +  VFEK  S   +   + S+M+GY++NG+  +A  +L  M+ + 
Sbjct: 429 SYLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNGLVDQAFLILRQMLDQK 488

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI----DADRQHY--SCMIDMLGRA 567
           ++P+ VT   +L  CN SG +  G       K ++G     D D+  +  + +IDM  ++
Sbjct: 489 VMPNVVTLASILPACNPSGYIDWG-------KQLHGFSIRNDLDQNVFVATALIDMYSKS 541

Query: 568 GILDKAEELLQQT 580
           G +  AE +  + 
Sbjct: 542 GSIAHAENVFSKA 554



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 117/463 (25%), Positives = 230/463 (49%), Gaps = 39/463 (8%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY--MVRGC 221
           A  LFD LP  +   WN ++      + PDE L  Y+ MK+   +    S+ Y  +++ C
Sbjct: 23  ARQLFDALPRPSTVLWNTIIIGLVCNNFPDEALLFYSNMKSSSPQVKCDSYTYSSVLKAC 82

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE-------------AKK 268
           +    L  GK +H+H ++   ++ +  V N+L++ YS C S                 +K
Sbjct: 83  ADTRNLVVGKAVHAHFLRC-LMNPSRIVYNSLLNMYSMCSSTTPDGKMVSGYSRCDLVRK 141

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +    V++WN++++ Y   +   +A++ F  M     +PS  SFV      S  G+
Sbjct: 142 VFDTMRKRTVVAWNTLIAWYVRTERYAEAVKQFSMMMKIGIKPSPVSFVNVFPAFSSLGD 201

Query: 329 VYFGKQIHGYVTKLGFDH-GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
                 +HG + KLG ++   ++V S+   MY +   +E +  VF++   R+ E  N+++
Sbjct: 202 FKNANVVHGMLVKLGSEYVNDLYVVSSAIFMYAELGCLEFAKKVFDNCLERNTEVWNTMI 261

Query: 388 TSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCA 443
           ++ + +    + +++F   V+ E   +DEVTL +     ++SA+++L    L   LH   
Sbjct: 262 SAFVQNNFSLEGIQLFFQAVESEDAAIDEVTLLS-----AISAASHLQKFELAEQLHAFV 316

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           IK+   + + V  +L+  YSRC  I+ S ++F+ +P  +VV + ++++ + +NG+  EAL
Sbjct: 317 IKNVAVTQVCVMNALIAMYSRCNSIDTSFKIFDNMPEKDVVSWNTMISAFVQNGLNDEAL 376

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCN-----HSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
            +   M ++ L+ D VT   +L+  +       G    G L+ N ++   G+D      S
Sbjct: 377 MLFYEMKKQDLMVDSVTVTALLSAASDLRNPDIGKQTHGYLLRNGIQ-FEGMD------S 429

Query: 559 CMIDMLGRAGILDKAEELLQQT-PGGGDCMMWSSLLRSCRVHG 600
            +IDM  ++G+++ A+ + +++     D   W+S++     +G
Sbjct: 430 YLIDMYAKSGLIEAAQNVFEKSFSHERDQATWNSMMSGYTQNG 472



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 58/218 (26%), Positives = 103/218 (47%), Gaps = 11/218 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           ML  K++P V T+ ++ P C     +     L  +   N    N++ +   ID + KSG 
Sbjct: 484 MLDQKVMPNVVTLASILPACNPSGYIDWGKQLHGFSIRNDLDQNVFVATALIDMYSKSGS 543

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ +F +   + +VTY+ +I G G+    + AL+++  M   GI+  A T  +VLS 
Sbjct: 544 IAHAENVFSKANEKSIVTYSTMILGYGQHGMGESALFMFHRMQKSGIQPDAVTLVAVLSA 603

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP----LVDLYMRMGPSVRALDLFDELPERN 175
           CS AG   EG+QI   + ++    N+   +     + D+  R G   +A +    L E+ 
Sbjct: 604 CSYAGLVDEGLQIFESMRTV---YNIQPSTEHFCCVADMLGRAGRVDKAYEFVIGLGEKG 660

Query: 176 --LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
             +  W  +L A C + +  E+ ++  K   E  + NG
Sbjct: 661 NVMEIWGSLLAA-CRIHKQFELGKLVAKKLLEMEKING 697


>gi|449523019|ref|XP_004168522.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 186/638 (29%), Positives = 334/638 (52%), Gaps = 14/638 (2%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L+   CQ +  +    +N TID ++K G L+SA++ FD    +D V++N+++ G      
Sbjct: 73  LIKQGCQSSTSI----ANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGS 128

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
               L  + +      + + S+   V+        Y++G   H  +   GF   L + + 
Sbjct: 129 IMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNS 188

Query: 151 LVDLYMRMGPSVRALDLFDELPERN-LATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVE 208
           L+ LY  +     A  LF E+  RN + +W++M+  F ++   ++   M+  M  E G+ 
Sbjct: 189 LLSLYAEVHMYF-AYKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIP 247

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+G++   +++ C+    +  G  +H  VI  G  D ++FV N+L+D YS C ++  A K
Sbjct: 248 PDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLED-DLFVGNSLIDMYSKCFNVHSAFK 306

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
           +F  IP  ++ISWN ++S Y   +   +AL L   M          +    L  A    +
Sbjct: 307 AFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLD 366

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
               + +HG + + G++   + + S + D Y KCN++E +  VF+    + +   ++++ 
Sbjct: 367 SLKCRSVHGVIIRKGYESNELLLNSVI-DAYAKCNLVELARMVFDGMNKKDVVAWSTMIA 425

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
               +G   +A+ +F  M +E I  + V++   ++A +VSA   L   +  H  A++ G 
Sbjct: 426 GFARNGKPDEAISVFKQMNEEVIP-NNVSIMNLMEACAVSAE--LRQSKWAHGIAVRRGL 482

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            S +A+  S++D YS+CG IE S + F +IP  NVVC++++++ +  NG+  EAL + E 
Sbjct: 483 ASEVAIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFEK 542

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           + Q G  P+ VT L +L+ C+H G+++EG   F SM   +GI+   +HYSC++DML RAG
Sbjct: 543 IKQNGTKPNAVTALSLLSACSHGGLIEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAG 602

Query: 569 ILDKAEELLQQTPG--GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
             ++A EL+++ P        +W +LL SCR +GN  +G   A+ +++LEP+  A Y   
Sbjct: 603 KFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGYMLA 662

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           SN Y+  G    S ++R  A  + +    G+SL+ +NS
Sbjct: 663 SNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINS 700



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 250/515 (48%), Gaps = 18/515 (3%)

Query: 92  KQALYLYDEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           ++AL LY E+   G + S +    S+L  CSN  F   G  +H  ++  G   +  I + 
Sbjct: 29  QEALQLYHEIRISGAQLSDTWVLPSILKACSNTSF-NLGTAMHGCLIKQGCQSSTSIANS 87

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
            +D YM+ G    A   FD    ++  +WN+M+            L  + K +    +PN
Sbjct: 88  TIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPN 147

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             S   +++      +  +G   H ++ + G+  + + V N+L+  Y+    +  A K F
Sbjct: 148 ISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAI-LSVQNSLLSLYAEV-HMYFAYKLF 205

Query: 271 DFIPV-DDVISWNSIVSIYADYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTG 327
             + V +DV+SW+ ++  +           L FR  +      P   + V  L   +   
Sbjct: 206 GEMSVRNDVVSWSVMIGGFVQIGEDEQGF-LMFRNMVTEAGIPPDGVTVVSVLKACTNLK 264

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           ++  G  +HG V   G +   + V ++L DMY KC  + S+   F+  P +++   N ++
Sbjct: 265 DISLGTMVHGLVIFRGLED-DLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLML 323

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS--CRLLHCCAIK 445
           ++ + + +  +A+ + G MV EG   DEVTL+  L+     A   L S  CR +H   I+
Sbjct: 324 SAYILNESHLEALALLGTMVREGAEKDEVTLANVLQI----AKHFLDSLKCRSVHGVIIR 379

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            G+ESN  +  S++DAY++C  +EL+  VF+ +   +VV +++++ G++RNG   EA+ +
Sbjct: 380 KGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISV 439

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            + M +  +IP+ V+ + ++  C  S  +++ +   + +    G+ ++    + +IDM  
Sbjct: 440 FKQMNEE-VIPNNVSIMNLMEACAVSAELRQSKWA-HGIAVRRGLASEVAIGTSIIDMYS 497

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + G ++ +     Q P   + + WS+++ + R++G
Sbjct: 498 KCGDIEASIRAFNQIP-QKNVVCWSAMISAFRING 531



 Score = 47.4 bits (111), Expect = 0.027,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 61/107 (57%), Gaps = 4/107 (3%)

Query: 392 HSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           +SGN ++A++++  +   G  L D   L + LKA S + S NLG+   +H C IK G +S
Sbjct: 24  YSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACS-NTSFNLGTA--MHGCLIKQGCQS 80

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           + +++ S +D Y + G ++ + + F+   + + V +  +++G   NG
Sbjct: 81  STSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNG 127


>gi|125603224|gb|EAZ42549.1| hypothetical protein OsJ_27115 [Oryza sativa Japonica Group]
          Length = 696

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 196/618 (31%), Positives = 321/618 (51%), Gaps = 20/618 (3%)

Query: 60  LNSAKKLFDEMPARDMVTYN-LLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           L +A+++FDE+P RD V++N LL +      HP +A  L   M + G+  +     S L 
Sbjct: 43  LAAARRVFDEVPRRDEVSWNALLAAQAASGAHP-EAWRLLRAMHAQGLASNTFALGSALR 101

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
             + A     G Q+    L  G   N++  S L+D+Y + G    A  +FD +PERN  +
Sbjct: 102 SAAVARRPAIGAQLQSLALKSGLANNVFAASALLDVYAKCGRVRDARQVFDGMPERNTVS 161

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM---VRGCSIGMLLDEGKQLHS 235
           WN ++  + E       L ++ +M+ EG+ P+  +F  +   V G S  ++     QLH 
Sbjct: 162 WNALIAGYTESGDMASALELFLEMEREGLAPDEATFASLLTAVEGPSCFLM----HQLHG 217

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYADYDLI 294
            ++K G   + + V NA +  YS CGSL ++++ FD I  + D+ISWN+++  Y    + 
Sbjct: 218 KIVKYG-SALGLTVLNAAITAYSQCGSLKDSRRIFDGIGDIRDLISWNAMLGAYTHNGMD 276

Query: 295 FDALELFFRM-QLCRKRPSIRSFVEFLNFASRTG-NVYFGKQIHGYVTKLGFDHGSVHVQ 352
            +A++ F RM Q     P + SF   ++  S  G + + G+ IHG V K   + G   V 
Sbjct: 277 DEAMKFFVRMMQESGVHPDMYSFTSIISSCSEHGHDDHQGRVIHGLVIKSALE-GVTPVC 335

Query: 353 SALTDMYGKCN---VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
           +AL  MY + N   ++E +   F S   +     NS++T     G   DA++ F  M  E
Sbjct: 336 NALIAMYTRYNENCMMEDAYKCFNSLVLKDTVSWNSMLTGYSQHGLSADALKFFRCMCSE 395

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  DE   S  L++ S  A   LG  + +H   I SGF SN  VS SL+  YS+ G I+
Sbjct: 396 NVRTDEYAFSAALRSSSELAVLQLG--KQIHGLVIHSGFASNDFVSSSLIFMYSKSGIID 453

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            + + FE+    + V + +++ GY+++G       +   M+QR    D +TF+ ++  C+
Sbjct: 454 DARKSFEEADKSSSVPWNAMIFGYAQHGQAENVDILFNEMLQRKAPLDHITFVGLITSCS 513

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+G+V EG  + N+M++ YG+    +HY+C +D+ GRAG LDKA++L+   P   D M+W
Sbjct: 514 HAGLVDEGSEILNTMETKYGVPLRMEHYACGVDLYGRAGQLDKAKKLIDSMPFEPDAMVW 573

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +CR+HGN  +   VA+ L   EP   + Y  +S+ YS +G +     ++     R
Sbjct: 574 MTLLGACRIHGNVELASDVASHLFVAEPRQHSTYVLLSSMYSGLGMWSDRATVQRVMKKR 633

Query: 650 KLTRDIGHSLIEV-NSCH 666
            L++  G S IEV N  H
Sbjct: 634 GLSKVPGWSWIEVKNEVH 651



 Score =  160 bits (406), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/455 (26%), Positives = 220/455 (48%), Gaps = 11/455 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+++++  +D + K G +  A+++FD MP R+ V++N LI+G  +      AL L+ EM 
Sbjct: 127 NVFAASALLDVYAKCGRVRDARQVFDGMPERNTVSWNALIAGYTESGDMASALELFLEME 186

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+    +TF+S+L+       +    Q+H +++  G  L L + +  +  Y + G   
Sbjct: 187 REGLAPDEATFASLLTAVEGPSCFLMH-QLHGKIVKYGSALGLTVLNAAITAYSQCGSLK 245

Query: 163 RALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRG 220
            +  +FD + + R+L +WN ML A+      DE ++ + +M  E GV P+  SF  ++  
Sbjct: 246 DSRRIFDGIGDIRDLISWNAMLGAYTHNGMDDEAMKFFVRMMQESGVHPDMYSFTSIISS 305

Query: 221 CSI-GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS---LIEAKKSFDFIPVD 276
           CS  G    +G+ +H  VIK     V   V NAL+  Y+       + +A K F+ + + 
Sbjct: 306 CSEHGHDDHQGRVIHGLVIKSALEGVTP-VCNALIAMYTRYNENCMMEDAYKCFNSLVLK 364

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D +SWNS+++ Y+ + L  DAL+ F  M     R    +F   L  +S    +  GKQIH
Sbjct: 365 DTVSWNSMLTGYSQHGLSADALKFFRCMCSENVRTDEYAFSAALRSSSELAVLQLGKQIH 424

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G V   GF      V S+L  MY K  +I+ +   FE A   S    N+++      G  
Sbjct: 425 GLVIHSGFASNDF-VSSSLIFMYSKSGIIDDARKSFEEADKSSSVPWNAMIFGYAQHGQA 483

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++   +F  M+     LD +T    + + S +   + GS  +L+    K G    +    
Sbjct: 484 ENVDILFNEMLQRKAPLDHITFVGLITSCSHAGLVDEGS-EILNTMETKYGVPLRMEHYA 542

Query: 457 SLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
             +D Y R G ++ + ++ + +P  P+ + + +++
Sbjct: 543 CGVDLYGRAGQLDKAKKLIDSMPFEPDAMVWMTLL 577


>gi|297805814|ref|XP_002870791.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297316627|gb|EFH47050.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 674

 Score =  300 bits (767), Expect = 2e-78,   Method: Compositional matrix adjust.
 Identities = 186/613 (30%), Positives = 320/613 (52%), Gaps = 10/613 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK--ESASTFSS 115
           GH+  A+KLFDEMP   +++YN++I    +      A+ ++  MVS GIK      T+  
Sbjct: 63  GHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPF 122

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           V          + G+ IH R+L   FG++ Y+ + L+ +YM  G    A ++FD +  R+
Sbjct: 123 VAKAAGELKSISLGLVIHGRILRSWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRD 182

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           + +WN M+  +      ++ L M++ M  EGV+P+  +   M+  C     L+ G+ +H 
Sbjct: 183 VISWNTMISGYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHK 242

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            V +    D  I V NALV+ Y  CG + EA+  F  +   DVI+W  +++ Y +   + 
Sbjct: 243 LVEEKRLGD-KIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVE 301

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +ALEL   MQ    RP+  +    ++       +  GK +HG+  +       + ++++L
Sbjct: 302 NALELCRLMQFEGVRPNAVTIASLVSACGDALKLNDGKCLHGWAIRQKVC-SDIIIETSL 360

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
             MY KC  I+    VF  A        ++++   + +  ++DA+++F  M  E +  + 
Sbjct: 361 ISMYAKCKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNI 420

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            TL++ L A +  A  +L     +HC   K+GF S++  +  L+  YS+CG +E +H++F
Sbjct: 421 ATLNSLLPAYATLA--DLRQTMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIF 478

Query: 476 ----EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
               EK  S +VV + ++++GY  +G G  AL +   M++ G+ P+++TF   L  C+HS
Sbjct: 479 NGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHS 538

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V+EG  +F+ M   Y   A   HY+C++D+LGRAG LD+A  L+   P      +W +
Sbjct: 539 GLVEEGLTLFSFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTIWGA 598

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +C  H N  +G   AN L ELEP +   Y  ++N Y+ +G ++   ++R       L
Sbjct: 599 LLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRNMMENVGL 658

Query: 652 TRDIGHSLIEVNS 664
            +  GHS IE+ S
Sbjct: 659 RKKPGHSTIEIRS 671



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 115/446 (25%), Positives = 213/446 (47%), Gaps = 15/446 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++ Y  N  +  ++  G +  A+ +FD M  RD++++N +ISG  +  +   AL ++D M
Sbjct: 150 MDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWM 209

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V+ G+    +T  S+L VC +      G  +H  V     G  + + + LV++Y++ G  
Sbjct: 210 VNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRM 269

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F  +  R++ TW  M+  + E    +  L +   M+ EGV PN ++   +V  C
Sbjct: 270 DEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCRLMQFEGVRPNAVTIASLVSAC 329

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
              + L++GK LH   I+   V  +I +  +L+  Y+ C  +    + F     +    W
Sbjct: 330 GDALKLNDGKCLHGWAIRQK-VCSDIIIETSLISMYAKCKHIDLCFRVFSGASRNHTGPW 388

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++I++     +L+ DAL+LF RM+     P+I +    L   +   ++     IH Y+TK
Sbjct: 389 SAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSLLPAYATLADLRQTMNIHCYLTK 448

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVF----ESAPGRSLECCNSLMTSLLHSGNIK 397
            GF   S+   + L  +Y KC  +ES+  +F    E    + +    +L++     G+  
Sbjct: 449 TGF-MSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGH 507

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALS----VSASANLGSCRLLHCCAIKSGFESNIA 453
           +A+++F  MV  G+  +E+T ++ L A S    V     L S  L H    K+   SN  
Sbjct: 508 NALQVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFSFMLEH---YKTLARSN-H 563

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIP 479
            +C ++D   R G ++ ++ +   IP
Sbjct: 564 YTC-IVDLLGRAGRLDEAYNLITTIP 588



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 120/514 (23%), Positives = 247/514 (48%), Gaps = 18/514 (3%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           S   + S+L+  +     ++   +HC V++ G  ++ +I S L   Y   G    A  LF
Sbjct: 14  SVKQYQSLLNHYAATQSISKTKALHCHVIT-GGRVSGHILSTLSVTYALCGHIAYARKLF 72

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE--PNGLSFCYMVRGCSIGML 226
           DE+P+ +L ++N+++R +       + + ++ +M +EG++  P+G ++ ++ +       
Sbjct: 73  DEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYTYPFVAKAAGELKS 132

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +  G  +H  +++  W  ++ +V NAL+  Y   G +  A+  FD +   DVISWN+++S
Sbjct: 133 ISLGLVIHGRILR-SWFGMDKYVQNALLAMYMNFGRVEMARNVFDVMKNRDVISWNTMIS 191

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGF 344
            Y     + DAL +F  M      P   + V  L        +  G+ +H  V   +LG 
Sbjct: 192 GYYRNGYMNDALMMFDWMVNEGVDPDHATIVSMLPVCGHLKGLEMGRNVHKLVEEKRLG- 250

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               + V++AL +MY KC  ++ +  VF     R +     ++   +  G++++A+E+  
Sbjct: 251 --DKIEVKNALVNMYLKCGRMDEARFVFGRMERRDVITWTCMINGYIEDGDVENALELCR 308

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  EG+  + VT+++ + A   +   N G C  LH  AI+    S+I +  SL+  Y++
Sbjct: 309 LMQFEGVRPNAVTIASLVSACGDALKLNDGKC--LHGWAIRQKVCSDIIIETSLISMYAK 366

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           C HI+L  +VF      +   +++I+ G  +N + R+ALD+ + M +  + P+  T   +
Sbjct: 367 CKHIDLCFRVFSGASRNHTGPWSAIIAGCVQNELVRDALDLFKRMRREDVEPNIATLNSL 426

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL---LQQTP 581
           L        +++   +   +    G  +     + ++ +  + G L+ A ++   +Q+  
Sbjct: 427 LPAYATLADLRQTMNIHCYLTKT-GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKH 485

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
              D ++W +L+    +HG+   G     + ME+
Sbjct: 486 KSKDVVLWGALISGYGMHGD---GHNALQVFMEM 516



 Score = 54.3 bits (129), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 48/199 (24%), Positives = 98/199 (49%), Gaps = 27/199 (13%)

Query: 413 LDEVTLSTTLKALSV----------SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           + EV L     ALSV          +A+ ++   + LHC  I  G  S   +S +L   Y
Sbjct: 1   MSEVFLRRAKNALSVKQYQSLLNHYAATQSISKTKALHCHVITGGRVSGHILS-TLSVTY 59

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL--IPDKVT 520
           + CGHI  + ++F+++P  +++ +  ++  Y R+G+  +A+++   M+  G+  +PD  T
Sbjct: 60  ALCGHIAYARKLFDEMPQSSLLSYNIVIRMYVRDGLYHDAINVFIRMVSEGIKCVPDGYT 119

Query: 521 --FLCVLAGCNHS---GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM-LGRAGILDKAE 574
             F+   AG   S   G+V  G++    ++S +G+D   Q+    + M  GR  +     
Sbjct: 120 YPFVAKAAGELKSISLGLVIHGRI----LRSWFGMDKYVQNALLAMYMNFGRVEMARNVF 175

Query: 575 ELLQQTPGGGDCMMWSSLL 593
           ++++      D + W++++
Sbjct: 176 DVMKNR----DVISWNTMI 190


>gi|147784524|emb|CAN61725.1| hypothetical protein VITISV_032420 [Vitis vinifera]
          Length = 763

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 176/575 (30%), Positives = 311/575 (54%), Gaps = 11/575 (1%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           + +P L +   N  ++ + K G L  A+K+FD MP R++V++  +I+G  +      AL 
Sbjct: 93  KSHPDLTL--QNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNALE 150

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
            Y +M+  G+     TF S++  CS+ G    G Q+H  VL   FG ++   + L+ +Y 
Sbjct: 151 FYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQNALISMYT 210

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFC 215
           +    + ALD+F  +  R+L +W  M+  F +L    E L  + +M  +GV  PN   F 
Sbjct: 211 KSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFIFG 270

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            +   CS  +  + G+QLH   IK G +  ++F   +L D Y+ CG L  A+  F  I  
Sbjct: 271 SVFSACSSLLQPEYGRQLHGMSIKFG-LGRDVFAGCSLCDMYAKCGLLSCARVVFYQIGR 329

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D+++WN+I++ +A      +A+  F +M+     P   +    L   +    +Y G Q+
Sbjct: 330 PDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQGMQV 389

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP-GRSLECCNSLMTSLLHSG 394
           HGY+ K+G D   V V + L  MY KC+ +  ++  FE       L   N+++T+ +H  
Sbjct: 390 HGYINKMGLDL-DVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACMHHD 448

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             ++   +   M       D +TL+  L A + + S  +G+   +HC A+K+G   +I+V
Sbjct: 449 QAEEVFGLLKLMCISQHRPDYITLTNVLGASAETVSIEIGN--QVHCYALKTGLNCDISV 506

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           +  L+D Y++CG ++ + ++F+ + +P+VV ++S++ GY++ G G EAL + + M +  +
Sbjct: 507 TNGLIDLYAKCGSLKTARKIFDSVINPDVVSWSSLILGYAQFGYGEEALKLFKTMRRLDV 566

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ VTF+ VL  C+H G+V+EG  ++ +M+  +GI   R+H SCM+D+L RAG L++AE
Sbjct: 567 KPNHVTFVGVLTACSHVGLVEEGWQLYGTMEKEFGIVPTREHCSCMVDLLARAGCLNEAE 626

Query: 575 ELLQQTPGGGDCMMWSSLLRSCR-VHGNEIIGRRV 608
             + Q     D ++W +LL +C+ VH  + + RR 
Sbjct: 627 AFIHQMAFDPDIVVWKTLLAACKSVH--QALARRT 659



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/480 (26%), Positives = 226/480 (47%), Gaps = 10/480 (2%)

Query: 180 NLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           N  +   C+    +E ++ +  + K  G      ++ Y++  CS    L+ G+++H H++
Sbjct: 31  NEYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHGRKIHDHML 90

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K      ++ + N +++ Y  CGSL +A+K FD +P  +V+SW S+++ Y+      +AL
Sbjct: 91  K-SKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQNGQGGNAL 149

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           E +F+M      P   +F   +   S  G++  G+Q+H +V K  F    +  Q+AL  M
Sbjct: 150 EFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFG-AHIIAQNALISM 208

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL-DEVT 417
           Y K NVI  ++ VF     R L    S++      G   +A+  F  M+ +G+ L +E  
Sbjct: 209 YTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQLGYELEALCYFKEMLHQGVYLPNEFI 268

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
             +   A S       G  R LH  +IK G   ++   CSL D Y++CG +  +  VF +
Sbjct: 269 FGSVFSACSSLLQPEYG--RQLHGMSIKFGLGRDVFAGCSLCDMYAKCGLLSCARVVFYQ 326

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           I  P++V + +I+ G++  G  +EA+     M  +GLIPD++T   +L  C     + +G
Sbjct: 327 IGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRHQGLIPDEITVRSLLCACTSPSELYQG 386

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
             V   +  + G+D D    + ++ M  +   L  A    ++     D + W+++L +C 
Sbjct: 387 MQVHGYINKM-GLDLDVPVCNTLLTMYAKCSELRDAIFFFEEMRCNADLVSWNAILTACM 445

Query: 598 VH--GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
            H    E+ G      + +  P D+   + V    +E    E+  Q+   AL   L  DI
Sbjct: 446 HHDQAEEVFGLLKLMCISQHRP-DYITLTNVLGASAETVSIEIGNQVHCYALKTGLNCDI 504



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 119/487 (24%), Positives = 232/487 (47%), Gaps = 12/487 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           ST++ ++S CS       G +IH  +L      +L + + ++++Y + G    A  +FD 
Sbjct: 64  STYAYLISACSYLRSLEHGRKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDA 123

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +PERN+ +W  ++  + +  +    L  Y +M   GV P+  +F  +++ CS    +  G
Sbjct: 124 MPERNVVSWTSVIAGYSQNGQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLG 183

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +QLH+HV+K  +   +I   NAL+  Y+    +I+A   F  +   D+ISW S+++ ++ 
Sbjct: 184 RQLHAHVLKSEF-GAHIIAQNALISMYTKSNVIIDALDVFSRMATRDLISWGSMIAGFSQ 242

Query: 291 YDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
                +AL  +F+  L +    P+   F    +  S      +G+Q+HG   K G     
Sbjct: 243 LGYELEAL-CYFKEMLHQGVYLPNEFIFGSVFSACSSLLQPEYGRQLHGMSIKFGLGR-D 300

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           V    +L DMY KC ++  +  VF       L   N+++    + G+ K+A+  F  M  
Sbjct: 301 VFAGCSLCDMYAKCGLLSCARVVFYQIGRPDLVAWNAIIAGFAYGGDAKEAIAFFSQMRH 360

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           +G+  DE+T+ + L A   ++ + L     +H    K G + ++ V  +L+  Y++C  +
Sbjct: 361 QGLIPDEITVRSLLCA--CTSPSELYQGMQVHGYINKMGLDLDVPVCNTLLTMYAKCSEL 418

Query: 469 ELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
             +   FE++  + ++V + +I+     +    E   +L++M      PD +T   VL  
Sbjct: 419 RDAIFFFEEMRCNADLVSWNAILTACMHHDQAEEVFGLLKLMCISQHRPDYITLTNVLGA 478

Query: 528 CNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
              +  ++ G  V   ++K+  G++ D    + +ID+  + G L  A ++        D 
Sbjct: 479 SAETVSIEIGNQVHCYALKT--GLNCDISVTNGLIDLYAKCGSLKTARKIFDSVI-NPDV 535

Query: 587 MMWSSLL 593
           + WSSL+
Sbjct: 536 VSWSSLI 542



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 61/228 (26%), Positives = 116/228 (50%), Gaps = 7/228 (3%)

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSC 436
           R+ +  N  +T+L       +A++ F F+  + G  L   T +  + A S   S   G  
Sbjct: 25  RAEQSSNEYITTLCKQKLFNEAIKAFEFLQKKTGFCLTLSTYAYLISACSYLRSLEHG-- 82

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           R +H   +KS    ++ +   +++ Y +CG ++ + +VF+ +P  NVV +TS++ GYS+N
Sbjct: 83  RKIHDHMLKSKSHPDLTLQNHILNMYGKCGSLKDAQKVFDAMPERNVVSWTSVIAGYSQN 142

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQ 555
           G G  AL+    M+Q G++PD+ TF  ++  C+  G +  G QL  + +KS +G     Q
Sbjct: 143 GQGGNALEFYFQMLQSGVMPDQFTFGSIIKACSSLGDIGLGRQLHAHVLKSEFGAHIIAQ 202

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
             + +I M  ++ ++  A ++  +     D + W S++      G E+
Sbjct: 203 --NALISMYTKSNVIIDALDVFSRM-ATRDLISWGSMIAGFSQLGYEL 247


>gi|449456490|ref|XP_004145982.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Cucumis sativus]
          Length = 710

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 196/656 (29%), Positives = 340/656 (51%), Gaps = 46/656 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI S+N  I   V+ GHL+ A+ LF+EMP R +V++N++ISG  KF    +AL L  EM 
Sbjct: 36  NIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEMH 95

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            + +K + +TFSS+LS+C+++G  +EG Q HC VL  G  +   +GS LV  Y  +    
Sbjct: 96  CNNVKLNETTFSSLLSICAHSGCSSEGKQFHCLVLKSGLQIFERVGSALVYFYANINDIS 155

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK--------------------- 201
            A  +FDEL ++N   W+L+L  + + +  D+ L ++ K                     
Sbjct: 156 GAKQVFDELHDKNDLLWDLLLVGYVKCNLMDDALDLFMKIPTRDVVAWTTMISAYARSEH 215

Query: 202 -----------MKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
                      M+  G VEPN  +F  +VR C     L  GK +H  + K G+   +  V
Sbjct: 216 NCKRGLELFCSMRMNGEVEPNEFTFDSVVRACGRMRYLSWGKVVHGILTKYGF-HFDHSV 274

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            +AL+ FY  C ++  AK  +D +    + + NS++        I DA E+F +++   K
Sbjct: 275 CSALILFYCQCEAIDNAKAVYDSMERPCLKASNSLLEGLIFAGRINDAEEIFCKLR--EK 332

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P   S+   L   + +G +   K++   +T     H +    + +  +Y +   I+ + 
Sbjct: 333 NPV--SYNLMLKGYATSGRIEGSKRLFERMT-----HKTTSSLNTMISVYSRNGEIDKAF 385

Query: 370 AVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            +FES          NS+++  + +   + A++++  M    +     T S   +A +  
Sbjct: 386 KLFESVKSEGDPVTWNSMISGCIQNHQHEGALKLYITMCRTSVERSRSTFSALFQACTCL 445

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
               LG  + LH  AI+  F+SN+ V  SL+D Y++CG I  +   F  +  PNV  FT+
Sbjct: 446 EYIQLG--QALHVHAIREAFDSNVYVGTSLIDMYAKCGSIYDAQTSFASVCFPNVAAFTA 503

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++NGY  +G+G EA  + + M++  + P+  T L +L+ C+ +GMVKEG  VF+SM+  Y
Sbjct: 504 LINGYVHHGLGIEAFSVFDEMLKHKVPPNGATLLGILSACSCAGMVKEGMTVFHSMEKCY 563

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           G+    +HY+C++D+LGR+G L +AE  ++  P   D ++W +LL +C    +  +G  V
Sbjct: 564 GVIPTLEHYACVVDLLGRSGRLYEAEAFIRCMPIEADRVIWGALLNACWFWMDLELGESV 623

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           A  ++ L+P   + Y  +SN Y+++G++   + +R   ++ K+ +  G S I+VN+
Sbjct: 624 AKKVLSLDPKAISAYIILSNIYAKLGKWVEKINVRRQLMSLKVKKIRGCSWIDVNN 679



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 28/89 (31%), Positives = 51/89 (57%)

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           SNI  +   +  + R GH++L+  +F ++P  +VV +  +++GYS+ G   EAL++   M
Sbjct: 35  SNIISTNIYISRHVRDGHLDLAQTLFNEMPVRSVVSWNIMISGYSKFGKYSEALNLASEM 94

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
               +  ++ TF  +L+ C HSG   EG+
Sbjct: 95  HCNNVKLNETTFSSLLSICAHSGCSSEGK 123


>gi|356565918|ref|XP_003551183.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Glycine max]
          Length = 703

 Score =  299 bits (766), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 200/628 (31%), Positives = 322/628 (51%), Gaps = 12/628 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y++N  I  + K   LNSA ++FDEMP RD V++N +IS             L   M   
Sbjct: 29  YTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASSGDLDTTWQLLGAMRRS 88

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
                + TF S+L   +  G    G Q+H  +L +G   N++ GS L+D+Y + G     
Sbjct: 89  THAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVGLSENVFSGSALLDMYAKCGRVDDG 148

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F  +PERN  +WN ++ ++  +   D    + + M+ EGVE +  +   ++      
Sbjct: 149 YVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGVEIDDGTVSPLLTLLDNA 208

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FIPVDDVISWNS 283
           M      QLH  ++K G    N  V NA +  YS C SL +A++ FD  +   D+++WNS
Sbjct: 209 MFYKLTMQLHCKIVKHGLELFNT-VCNATITAYSECCSLQDAERVFDGAVLCRDLVTWNS 267

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++  Y  ++    A ++F  MQ     P   ++   +   S   +   GK +HG V K G
Sbjct: 268 MLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGACSVQEHKTCGKCLHGLVIKRG 327

Query: 344 FDHGSVHVQSALTDMYGKCN--VIESSVAVFESAPGRSLECC--NSLMTSLLHSGNIKDA 399
            D+ SV V +AL  MY + N   +E ++ +F S   +  +CC  NS++   +  G  +DA
Sbjct: 328 LDN-SVPVSNALISMYIRFNDRCMEDALRIFFSMDLK--DCCTWNSILAGYVQVGLSEDA 384

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  M    I +D  T S  +++ S  A+  LG  +  H  A+K GF++N  V  SL+
Sbjct: 385 LRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLG--QQFHVLALKVGFDTNSYVGSSLI 442

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             YS+CG IE + + FE     N + + SI+ GY+++G G  ALD+  +M +R +  D +
Sbjct: 443 FMYSKCGIIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIALDLFYMMKERKVKLDHI 502

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL  C+H+G+V+EG     SM+S +GI   ++HY+C ID+ GRAG L KA  L++ 
Sbjct: 503 TFVAVLTACSHNGLVEEGCNFIESMESDFGIPPRQEHYACAIDLYGRAGHLKKATALVET 562

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D M+  +LL +CR  G+  +  ++A IL+ELEP +   Y  +S  Y     +   
Sbjct: 563 MPFEPDAMVLKTLLGACRFCGDIELASQIAKILLELEPEEHCTYVILSEMYGRFKMWGEK 622

Query: 640 MQIRETALARKLTRDIGHSLIEV-NSCH 666
             +      R + +  G S IEV N+ H
Sbjct: 623 ASVTRMMRERGVKKVPGWSWIEVKNNVH 650



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 122/461 (26%), Positives = 215/461 (46%), Gaps = 21/461 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++S +  +D + K G ++    +F  MP R+ V++N L++   +      A ++   M 
Sbjct: 128 NVFSGSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCME 187

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++    T S +L++  NA FY   +Q+HC+++  G  L   + +  +  Y       
Sbjct: 188 LEGVEIDDGTVSPLLTLLDNAMFYKLTMQLHCKIVKHGLELFNTVCNATITAYSECCSLQ 247

Query: 163 RALDLFD-ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A  +FD  +  R+L TWN ML A+    + D   +++  M+  G EP+  ++  +V  C
Sbjct: 248 DAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIVGAC 307

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS--LIEAKKSFDFIPVDDVI 279
           S+      GK LH  VIK G +D ++ V+NAL+  Y       + +A + F  + + D  
Sbjct: 308 SVQEHKTCGKCLHGLVIKRG-LDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDLKDCC 366

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WNSI++ Y    L  DAL LF +M+         +F   +   S    +  G+Q H   
Sbjct: 367 TWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQQFHVLA 426

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K+GFD  S +V S+L  MY KC +IE +   FE+    +    NS++      G    A
Sbjct: 427 LKVGFDTNS-YVGSSLIFMYSKCGIIEDARKSFEATSKDNAIVWNSIIFGYAQHGQGNIA 485

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV----- 454
           +++F  M +  + LD +T    L A S +     G       C      ES+  +     
Sbjct: 486 LDLFYMMKERKVKLDHITFVAVLTACSHNGLVEEG-------CNFIESMESDFGIPPRQE 538

Query: 455 --SCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
             +C++ D Y R GH++ +  + E +P  P+ +   +++  
Sbjct: 539 HYACAI-DLYGRAGHLKKATALVETMPFEPDAMVLKTLLGA 578



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 121/481 (25%), Positives = 222/481 (46%), Gaps = 21/481 (4%)

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           I  HCR + LG   + Y  + L+  Y +      A  +FDE+P R+  +WN ++ AF   
Sbjct: 13  IATHCRAIKLGSIADPYTANNLITSYAKCTELNSAHQVFDEMPHRDTVSWNAIISAFASS 72

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              D   ++   M+      +  +F  +++G +    L  G+QLHS ++K+G +  N+F 
Sbjct: 73  GDLDTTWQLLGAMRRSTHAFDSRTFGSILKGVAYVGKLKLGQQLHSVMLKVG-LSENVFS 131

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA---DYDLIFDALELFFRMQL 306
            +AL+D Y+ CG + +    F  +P  + +SWN++V+ Y+   D D+ F  L       +
Sbjct: 132 GSALLDMYAKCGRVDDGYVVFQSMPERNYVSWNTLVASYSRVGDCDMAFWVLSCMELEGV 191

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGK---QIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
                ++   +  L+      N  F K   Q+H  + K G +  +    + +T  Y +C 
Sbjct: 192 EIDDGTVSPLLTLLD------NAMFYKLTMQLHCKIVKHGLELFNTVCNATIT-AYSECC 244

Query: 364 VIESSVAVFESAP-GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
            ++ +  VF+ A   R L   NS++ + L       A ++F  M + G   D  T +  +
Sbjct: 245 SLQDAERVFDGAVLCRDLVTWNSMLGAYLMHEKEDLAFKVFLDMQNFGFEPDAYTYTGIV 304

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH--IELSHQVFEKIPS 480
            A SV      G C  LH   IK G ++++ VS +L+  Y R     +E + ++F  +  
Sbjct: 305 GACSVQEHKTCGKC--LHGLVIKRGLDNSVPVSNALISMYIRFNDRCMEDALRIFFSMDL 362

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            +   + SI+ GY + G+  +AL +   M    +  D  TF  V+  C+    ++ GQ  
Sbjct: 363 KDCCTWNSILAGYVQVGLSEDALRLFLQMRCLVIEIDHYTFSAVIRSCSDLATLQLGQ-Q 421

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F+ +    G D +    S +I M  + GI++ A +  + T    + ++W+S++     HG
Sbjct: 422 FHVLALKVGFDTNSYVGSSLIFMYSKCGIIEDARKSFEATS-KDNAIVWNSIIFGYAQHG 480

Query: 601 N 601
            
Sbjct: 481 Q 481


>gi|449453904|ref|XP_004144696.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 189/626 (30%), Positives = 312/626 (49%), Gaps = 40/626 (6%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  + Y+ N  I  +   G+L  A+KLF+E P ++ +T++ L+SG  K     + L  + 
Sbjct: 64  PYRDKYTWNIMISAYANLGNLVEARKLFNETPIKNSITWSSLVSGYCKNGCEVEGLRQFS 123

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M S G K S  T  SVL  CS       G  IHC  + +    N+++ + LVD+Y +  
Sbjct: 124 QMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCK 183

Query: 160 PSVRALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
             + A  LF  LP+R N   W  ML  + +     + ++ + +M+ +G+E N  +F  ++
Sbjct: 184 CLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSIL 243

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+       G+Q+H  +I  G+   N++V +ALVD Y+ CG L  A+   D + +DDV
Sbjct: 244 TACTSISAYAFGRQVHGCIIWSGF-GPNVYVQSALVDMYAKCGDLASARMILDTMEIDDV 302

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           + WNS++     +  + +AL LF +M     R    ++   L   +   N+  G+ +H  
Sbjct: 303 VCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSL 362

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K GFD     V +AL DMY K   +  ++ VF     + +    SL+T  +H+G  + 
Sbjct: 363 TIKTGFDACKT-VSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEK 421

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+++F  M    + LD+  ++    A +       G  R +H   IKS   S ++   SL
Sbjct: 422 ALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFG--RQVHANFIKSSAGSLLSAENSL 479

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG +E + +VF+ + + NV+ +T+I+ GY++N                      
Sbjct: 480 ITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQN---------------------- 517

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
                        G+V+ GQ  F SM+ VYGI     HY+CMID+LGRAG +++AE LL 
Sbjct: 518 -------------GLVETGQSYFESMEKVYGIKPASDHYACMIDLLGRAGKINEAEHLLN 564

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           +     D  +W SLL +CRVHGN  +G R    L++LEP +   Y  +SN +S  G +E 
Sbjct: 565 RMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWED 624

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
           +  IR       + ++ G+S IE+ S
Sbjct: 625 AAHIRRAMKTMGINKEPGYSWIEMKS 650



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 109/411 (26%), Positives = 200/411 (48%), Gaps = 10/411 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S    P   T+ ++   C+++  L +  ++  Y  +   + NI+ +   +D + K   
Sbjct: 125 MWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKC 184

Query: 60  LNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           L  A+ LF  +P R + V +  +++G  +     +A+  + EM + G++ +  TF S+L+
Sbjct: 185 LLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILT 244

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C++   Y  G Q+H  ++  GFG N+Y+ S LVD+Y + G    A  + D +   ++  
Sbjct: 245 ACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVC 304

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+         +E L +++KM    +  +  ++  +++  +    L  G+ +HS  I
Sbjct: 305 WNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTI 364

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K G+ D    V+NALVD Y+  G+L  A   F+ I   DVISW S+V+ Y        AL
Sbjct: 365 KTGF-DACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKAL 423

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFA--SRTGNVYFGKQIHGYVTKLGFDHGS-VHVQSAL 355
           +LF  M+    R  +  FV    F+  +    + FG+Q+H    K     GS +  +++L
Sbjct: 424 QLFCDMRTA--RVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSS--AGSLLSAENSL 479

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             MY KC  +E ++ VF+S   R++    +++     +G ++     F  M
Sbjct: 480 ITMYAKCGCLEDAIRVFDSMETRNVISWTAIIVGYAQNGLVETGQSYFESM 530


>gi|357519003|ref|XP_003629790.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355523812|gb|AET04266.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 908

 Score =  299 bits (765), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 181/609 (29%), Positives = 325/609 (53%), Gaps = 5/609 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +V  G L   +K+FD++    +  +NLL+S   K  + ++++ L+ +M   G+  +  TF
Sbjct: 139 YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 198

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           + VL   +  G   E  ++H  VL LGFG N  + + L+  Y + G    A +LFDEL E
Sbjct: 199 TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSE 258

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ +WN M+            L ++ +M   GVE +  +   ++  C+    L  G+ L
Sbjct: 259 PDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRAL 318

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H   +K  + +  +F +N L+D YS CG+L  A + F  +    ++SW SI++ Y    L
Sbjct: 319 HGFGVKACFSEEVVF-SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGL 377

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             DA+ LF  MQ    RP I +    ++  + + ++  G+ +H YV K G    ++ V +
Sbjct: 378 YSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG-SNLPVTN 436

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL +MY KC  +E +  VF   P + +   N+++     +    +A+E+F  M  +    
Sbjct: 437 ALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKP 495

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D++T++  L A +  A+ + G  R +H   ++ G+ S++ V+C+L+D Y++CG + L+  
Sbjct: 496 DDITMACVLPACAGLAALDKG--REIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQL 553

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F+ IP  +++ +T ++ GY  +G G EA+     M   G+ PD+ +F  +L  C+HSG+
Sbjct: 554 LFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSGL 613

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           + EG   FNSM++  G++   +HY+C++D+L R G L KA + ++  P   D  +W  LL
Sbjct: 614 LNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVLL 673

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
             CR+H +  +  +VA  + ELEP +   Y  ++N Y+E  ++E   ++R+    R   +
Sbjct: 674 SGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFKQ 733

Query: 654 DIGHSLIEV 662
           + G S IEV
Sbjct: 734 NPGCSWIEV 742



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 269/528 (50%), Gaps = 14/528 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +++ SVL +C+      +G ++H  ++S G  ++  +G+ LV +Y+  G  V+   +FD+
Sbjct: 95  NSYCSVLQLCAEKKSLEDGKRVHSVIISNGISVDEALGAKLVFMYVNCGDLVQGRKIFDK 154

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +    +  WNL++  + ++    E + ++ KM+  GV  N  +F  +++  +    + E 
Sbjct: 155 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 214

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++H +V+KLG+   N  V N+L+  Y   G +  A   FD +   DV+SWNS+++    
Sbjct: 215 KRVHGYVLKLGF-GSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 273

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                + LE+F +M +      + + V  L   +  GN+  G+ +HG+  K  F    V 
Sbjct: 274 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSE-EVV 332

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
             + L DMY KC  +  +  VF      ++    S++ + +  G   DA+ +F  M  +G
Sbjct: 333 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKG 392

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D  T+++ + A + S+S + G  R +H   IK+G  SN+ V+ +L++ Y++CG +E 
Sbjct: 393 VRPDIYTVTSIVHACACSSSLDKG--RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEE 450

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +  VF KIP  ++V + +++ GYS+N +  EAL++   M Q+   PD +T  CVL  C  
Sbjct: 451 ARLVFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDM-QKQFKPDDITMACVLPACAG 509

Query: 531 SGMVKEGQLVFNS-MKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQQTPGGGDCMM 588
              + +G+ +    ++  Y  D    H +C ++DM  + G+L  A+ L    P   D + 
Sbjct: 510 LAALDKGREIHGHILRRGYFSDL---HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLIS 565

Query: 589 WSSLLRSCRVH--GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           W+ ++    +H  GNE I       +  +EP D + +S + N  S  G
Sbjct: 566 WTVMIAGYGMHGFGNEAISTFNEMRIAGIEP-DESSFSAILNACSHSG 612



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/480 (27%), Positives = 243/480 (50%), Gaps = 7/480 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + K G + SA  LFDE+   D+V++N +I+GC         L ++ +M+  G++
Sbjct: 234 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 293

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
              +T  SVL  C+N G  + G  +H   +   F   +   + L+D+Y + G    A ++
Sbjct: 294 VDLTTLVSVLVACANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 353

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++ +  + +W  ++ A+       + + ++++M+++GV P+  +   +V  C+    L
Sbjct: 354 FVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 413

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           D+G+ +HS+VIK G +  N+ V NAL++ Y+ CGS+ EA+  F  IPV D++SWN+++  
Sbjct: 414 DKGRDVHSYVIKNG-MGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 472

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+   L  +ALELF  MQ  + +P   +    L   +    +  G++IHG++ + G+   
Sbjct: 473 YSQNLLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGY-FS 530

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            +HV  AL DMY KC ++  +  +F+  P + L     ++      G   +A+  F  M 
Sbjct: 531 DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 590

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             GI  DE + S  L A S S   N G  +  +    + G E  +     ++D  +R G+
Sbjct: 591 IAGIEPDESSFSAILNACSHSGLLNEG-WKFFNSMRNECGVEPKLEHYACVVDLLARMGN 649

Query: 468 IELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +  +++  E +P  P+   +  +++G   +   + A  + E + +  L PD   +  VLA
Sbjct: 650 LSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFE--LEPDNTRYYVVLA 707



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 115/414 (27%), Positives = 212/414 (51%), Gaps = 8/414 (1%)

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N  +  FCE+      + +  K K+  +  N  S+C +++ C+    L++GK++HS +I 
Sbjct: 65  NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 122

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G + V+  +   LV  Y  CG L++ +K FD I  D V  WN ++S YA      +++ 
Sbjct: 123 NG-ISVDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 181

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF +MQ      +  +F   L   +  G V   K++HGYV KLGF   +  V S L   Y
Sbjct: 182 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNS-LIAAY 240

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K   +ES+  +F+      +   NS++   + +G   + +E+F  M+  G+ +D  TL 
Sbjct: 241 FKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLV 300

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A +   + +LG  R LH   +K+ F   +  S +L+D YS+CG++  + +VF K+ 
Sbjct: 301 SVLVACANIGNLSLG--RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 358

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
              +V +TSI+  Y R G+  +A+ + + M  +G+ PD  T   ++  C  S  + +G+ 
Sbjct: 359 DTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD 418

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           V +S     G+ ++    + +I+M  + G +++A  +  + P   D + W++++
Sbjct: 419 V-HSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP-VKDIVSWNTMI 470



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 80/281 (28%), Positives = 155/281 (55%), Gaps = 2/281 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  +D + K G+LN A ++F +M    +V++  +I+   +      A+ L+DEM S G+
Sbjct: 334 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSIIAAYVREGLYSDAIGLFDEMQSKGV 393

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           +    T +S++  C+ +    +G  +H  V+  G G NL + + L+++Y + G    A  
Sbjct: 394 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARL 453

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F ++P +++ +WN M+  + +   P+E L ++  M+ +  +P+ ++   ++  C+    
Sbjct: 454 VFSKIPVKDIVSWNTMIGGYSQNLLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAA 512

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           LD+G+++H H+++ G+   ++ VA ALVD Y+ CG L+ A+  FD IP  D+ISW  +++
Sbjct: 513 LDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 571

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
            Y  +    +A+  F  M++    P   SF   LN  S +G
Sbjct: 572 GYGMHGFGNEAISTFNEMRIAGIEPDESSFSAILNACSHSG 612


>gi|449461477|ref|XP_004148468.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
 gi|449515698|ref|XP_004164885.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g39530-like [Cucumis sativus]
          Length = 837

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 181/621 (29%), Positives = 323/621 (52%), Gaps = 5/621 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y     +  + K G ++ A+ +FD +  +  VT+  +I+G  K    + +L L++ M+
Sbjct: 176 DVYVGTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMM 235

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +       SS+L+ CS  G+   G QIH  VL     +++   + L+D Y + G   
Sbjct: 236 ESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGRVK 295

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               LFD L  +N+ +W  M+  + + S   E + +  +M   G +P+  +   ++  C 
Sbjct: 296 AGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCG 355

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G+Q+HS+VIK+  ++ + FV NAL+D YS C +L +AK+ FD +    V+ +N
Sbjct: 356 SVDALQHGRQIHSYVIKVC-LEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYN 414

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y+    +  ALE+F  M+L    PS  +FV  L  ++    +   KQIHG + K 
Sbjct: 415 AMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIKY 474

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF        SAL D+Y KC+ I  +  VFE    + +   NSL +        ++A ++
Sbjct: 475 GFSLDKF-TSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKL 533

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           +  +       +E T +    A S+ AS   G  +  H   +K G ES+  ++ +L+D Y
Sbjct: 534 YSDLQLSRERPNEFTFAALTTAASILASLPHG--QQFHNQVMKMGLESDPFITNALVDMY 591

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG +E + ++F      +  C+ S+++ Y+++G   EAL M E M+   + P+ VTF+
Sbjct: 592 AKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFV 651

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C+H G V++G   +NSM   YGI+   +HY+ ++ +LGRAG L +A E +++   
Sbjct: 652 SVLSACSHVGFVEDGLQHYNSMAR-YGIEPGIEHYASVVTLLGRAGRLTEAREFIEKMTI 710

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
               ++W SLL +CRV GN  + +  A + + ++P+D   Y  +SN ++  G +    ++
Sbjct: 711 RPAALVWRSLLSACRVFGNVELAKHAAEMAISIDPMDSGSYVMLSNIFASKGMWGDVKRL 770

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R       + ++ G S IEVN
Sbjct: 771 RLKMDVNGVVKEPGQSWIEVN 791



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 143/562 (25%), Positives = 273/562 (48%), Gaps = 7/562 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +++ SN  +  + K G +  A  LFD+MP R++V+++ ++S   +  + ++AL  + E
Sbjct: 72  QYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLGYNEKALLYFLE 131

Query: 101 MVSHGI-KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
                + K +    +S++  C        G Q+H  V+  GFG ++Y+G+ LV LY + G
Sbjct: 132 FQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVYVGTSLVVLYAKHG 191

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
              +A  +FD L  +   TW  ++  + +  R +  L+++N M    V P+      ++ 
Sbjct: 192 EIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNVIPDKYVLSSILN 251

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS+   L  GKQ+H++V++     +++   N L+DFY+ CG +   K  FD + V ++I
Sbjct: 252 ACSVLGYLKGGKQIHAYVLR-SETKMDVSTYNVLIDFYTKCGRVKAGKALFDRLDVKNII 310

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW ++++ Y      ++A+EL   M     +P   +    L        +  G+QIH YV
Sbjct: 311 SWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSCGSVDALQHGRQIHSYV 370

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K+  +H +  V +AL DMY KCN ++ +  VF+     S+   N+++      G +  A
Sbjct: 371 IKVCLEHDNF-VTNALIDMYSKCNALDDAKRVFDVVTCHSVVYYNAMIEGYSRQGYLCGA 429

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +E+F  M  + +    +T  + L   +      L   + +H   IK GF  +   S +L+
Sbjct: 430 LEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLS--KQIHGLIIKYGFSLDKFTSSALI 487

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D YS+C  I  +  VFE   + ++V + S+ +GY+      EA  +   +      P++ 
Sbjct: 488 DVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDLQLSRERPNEF 547

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF  +    +    +  GQ   N +  + G+++D    + ++DM  + G +++AE++   
Sbjct: 548 TFAALTTAASILASLPHGQQFHNQVMKM-GLESDPFITNALVDMYAKCGSVEEAEKIFSS 606

Query: 580 TPGGGDCMMWSSLLRSCRVHGN 601
           +    D   W+S++     HG 
Sbjct: 607 SV-WKDTACWNSMISMYAQHGK 627



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 122/495 (24%), Positives = 242/495 (48%), Gaps = 8/495 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+ + ++P    ++++   C+ +  L     + +Y  +   ++++ + N  ID + K G 
Sbjct: 234 MMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDVSTYNVLIDFYTKCGR 293

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + + K LFD +  ++++++  +I+G  +  +  +A+ L  EM   G K      SSVL+ 
Sbjct: 294 VKAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTS 353

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C +      G QIH  V+ +    + ++ + L+D+Y +      A  +FD +   ++  +
Sbjct: 354 CGSVDALQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVVYY 413

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  +         L ++ +M+ + V P+ L+F  ++   +  + L   KQ+H  +IK
Sbjct: 414 NAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQIHGLIIK 473

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+  ++ F ++AL+D YS C  + +A+  F+     D++ WNS+ S Y       +A +
Sbjct: 474 YGF-SLDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFK 532

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+  +QL R+RP+  +F      AS   ++  G+Q H  V K+G +     + +AL DMY
Sbjct: 533 LYSDLQLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPF-ITNALVDMY 591

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  +E +  +F S+  +   C NS+++     G +++A+ MF  MV   I  + VT  
Sbjct: 592 AKCGSVEEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFV 651

Query: 420 TTLKALSVSASANLGSCRLLHCCAI-KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           + L A S       G   L H  ++ + G E  I    S++    R G +  + +  EK+
Sbjct: 652 SVLSACSHVGFVEDG---LQHYNSMARYGIEPGIEHYASVVTLLGRAGRLTEAREFIEKM 708

Query: 479 P-SPNVVCFTSIMNG 492
              P  + + S+++ 
Sbjct: 709 TIRPAALVWRSLLSA 723



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 120/469 (25%), Positives = 231/469 (49%), Gaps = 17/469 (3%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           ++HC+V+  G   ++++ + L+  Y ++G    A  LFD++P RNL +W+ ++  + +L 
Sbjct: 61  KVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQLG 120

Query: 191 RPDEVLRMYNKMKAEGVEP-NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
             ++ L  + + +   V+  N      ++R C      + G Q+HS+VIK G+ + +++V
Sbjct: 121 YNEKALLYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGE-DVYV 179

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             +LV  Y+  G + +A+  FD + +   ++W +I++ Y        +L+LF  M     
Sbjct: 180 GTSLVVLYAKHGEIDKARLVFDGLVLKTPVTWTAIITGYTKSGRSEVSLQLFNLMMESNV 239

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYV----TKLGFDHGSVHVQSALTDMYGKCNVI 365
            P        LN  S  G +  GKQIH YV    TK+      V   + L D Y KC  +
Sbjct: 240 IPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKM-----DVSTYNVLIDFYTKCGRV 294

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           ++  A+F+    +++    +++   + +    +AVE+ G M   G   DE   S+ L + 
Sbjct: 295 KAGKALFDRLDVKNIISWTTMIAGYMQNSYDWEAVELVGEMFRMGWKPDEYACSSVLTSC 354

Query: 426 -SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            SV A   L   R +H   IK   E +  V+ +L+D YS+C  ++ + +VF+ +   +VV
Sbjct: 355 GSVDA---LQHGRQIHSYVIKVCLEHDNFVTNALIDMYSKCNALDDAKRVFDVVTCHSVV 411

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + +++ GYSR G    AL++ + M  + + P  +TF+ +L        ++  + + + +
Sbjct: 412 YYNAMIEGYSRQGYLCGALEVFQEMRLKHVSPSFLTFVSLLGLSAALLCLQLSKQI-HGL 470

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
              YG   D+   S +ID+  +   +  A  + + T    D ++W+SL 
Sbjct: 471 IIKYGFSLDKFTSSALIDVYSKCSCIRDARYVFEGTT-NKDIVVWNSLF 518



 Score = 92.0 bits (227), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 61/263 (23%), Positives = 130/263 (49%), Gaps = 5/263 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+ ++S+  ID + K   +  A+ +F+    +D+V +N L SG       ++A  LY ++
Sbjct: 478 LDKFTSSALIDVYSKCSCIRDARYVFEGTTNKDIVVWNSLFSGYNLQLKSEEAFKLYSDL 537

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
                + +  TF+++ +  S       G Q H +V+ +G   + +I + LVD+Y + G  
Sbjct: 538 QLSRERPNEFTFAALTTAASILASLPHGQQFHNQVMKMGLESDPFITNALVDMYAKCGSV 597

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F     ++ A WN M+  + +  + +E LRM+  M +  + PN ++F  ++  C
Sbjct: 598 EEAEKIFSSSVWKDTACWNSMISMYAQHGKVEEALRMFETMVSNNINPNYVTFVSVLSAC 657

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD-VIS 280
           S    +++G Q ++ + + G ++  I    ++V      G L EA++  + + +    + 
Sbjct: 658 SHVGFVEDGLQHYNSMARYG-IEPGIEHYASVVTLLGRAGRLTEAREFIEKMTIRPAALV 716

Query: 281 WNSIVS---IYADYDLIFDALEL 300
           W S++S   ++ + +L   A E+
Sbjct: 717 WRSLLSACRVFGNVELAKHAAEM 739



 Score = 50.8 bits (120), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 49/227 (21%), Positives = 109/227 (48%), Gaps = 16/227 (7%)

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           R +HC  +  G + ++ +S  L+ +Y + G +  +  +F+K+P+ N+V ++S+++ Y++ 
Sbjct: 60  RKVHCQVVLWGLQYDVFLSNLLLHSYFKIGSVFDAGTLFDKMPNRNLVSWSSVVSMYTQL 119

Query: 497 GMGREALDMLEVMIQRGLIP--DKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDAD 553
           G   +AL +  +  QR  +   ++     ++  C      + G  V +  +KS +G D  
Sbjct: 120 GYNEKAL-LYFLEFQRTCVDKLNEYILASIIRACVQRDGGEPGSQVHSYVIKSGFGEDVY 178

Query: 554 RQHYSCMIDMLGRAGILDKA----EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
               + ++ +  + G +DKA    + L+ +TP     + W++++      G   +  ++ 
Sbjct: 179 VG--TSLVVLYAKHGEIDKARLVFDGLVLKTP-----VTWTAIITGYTKSGRSEVSLQLF 231

Query: 610 NILMELEPV-DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           N++ME   + D  V S + N  S +G  +   QI    L  +   D+
Sbjct: 232 NLMMESNVIPDKYVLSSILNACSVLGYLKGGKQIHAYVLRSETKMDV 278


>gi|115478174|ref|NP_001062682.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|47848472|dbj|BAD22327.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|47848643|dbj|BAD22491.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113630915|dbj|BAF24596.1| Os09g0251500 [Oryza sativa Japonica Group]
 gi|215767397|dbj|BAG99625.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 877

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 185/651 (28%), Positives = 342/651 (52%), Gaps = 34/651 (5%)

Query: 36  CQPNPQL---------------NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYN 79
           C P+ QL               +++ +N  +  +   G ++ A+++FDE  + R+ V++N
Sbjct: 112 CVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWN 171

Query: 80  LLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL 139
            L+S   K      A+ ++ EMV  GI+ +   FS V++ C+ +     G Q+H  V+ +
Sbjct: 172 GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRM 231

Query: 140 GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE-VLRM 198
           G+  +++  + LVD+Y++MG    A  +F+++P+ ++ +WN ++   C L+  D   + +
Sbjct: 232 GYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG-CVLNGHDHRAIEL 290

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
             +MK+ G+ PN      +++ C+     D G+Q+H  +IK    D + ++   LVD Y+
Sbjct: 291 LLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKAN-ADSDDYIGVGLVDMYA 349

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ---LCRKRPSIRS 315
               L +A K FD++   D+I WN+++S  +      +A  +F+ ++   L   R ++ +
Sbjct: 350 KNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAA 409

Query: 316 FVEF---LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
            ++    L  AS T      +Q+H    K+GF     HV + L D Y KC+ +  ++ VF
Sbjct: 410 VLKSTASLEAASAT------RQVHALAEKIGFIF-DAHVVNGLIDSYWKCSCLSDAIRVF 462

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           E      +    S++T+L    + + A+++F  M+ +G+  D   LS+ L A +  ++  
Sbjct: 463 EECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYE 522

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
            G  + +H   IK  F S+     +L+  Y++CG IE +   F  +P   VV +++++ G
Sbjct: 523 QG--KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGG 580

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552
            +++G G+ AL++   M+  G+ P+ +T   VL  CNH+G+V E +  FNSMK ++GID 
Sbjct: 581 LAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDR 640

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL 612
             +HYSCMID+LGRAG LD A EL+   P   +  +W +LL + RVH +  +G+  A  L
Sbjct: 641 TEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKL 700

Query: 613 MELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             LEP     +  ++N Y+  G +    ++R+      + ++   S +EV 
Sbjct: 701 FILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVK 751



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 147/555 (26%), Positives = 279/555 (50%), Gaps = 21/555 (3%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+++FDE+P    V+++ L++       P+ A+  +  M + G+  +      VL    +
Sbjct: 56  ARRVFDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPD 115

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL-PERNLATWNL 181
           A     G Q+H   ++ GFG ++++ + LV +Y   G    A  +FDE   ERN  +WN 
Sbjct: 116 AQL---GAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNG 172

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++ A+ +  +  + ++++ +M   G++P    F  +V  C+    +D G+Q+H+ V+++G
Sbjct: 173 LMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMG 232

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS--IYADYDLIFDALE 299
           + + ++F ANALVD Y   G +  A   F+ +P  DV+SWN+++S  +   +D    A+E
Sbjct: 233 Y-EKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHD--HRAIE 289

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L  +M+     P++      L   +  G    G+QIHG++ K   D    ++   L DMY
Sbjct: 290 LLLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKANADSDD-YIGVGLVDMY 348

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K + ++ ++ VF+    R L   N+L++   H G   +A  +F  +  EG+G++  TL+
Sbjct: 349 AKNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLA 408

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             LK+ +   +A+  + R +H  A K GF  +  V   L+D+Y +C  +  + +VFE+  
Sbjct: 409 AVLKSTASLEAAS--ATRQVHALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECS 466

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           S +++  TS++   S+   G  A+ +   M+++GL PD      +L  C      ++G+ 
Sbjct: 467 SGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGKQ 526

Query: 540 VFNSM-KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           V   + K  +  DA     + ++    + G ++ AE      P  G  + WS+++     
Sbjct: 527 VHAHLIKRQFMSDAFAG--NALVYTYAKCGSIEDAELAFSSLPERG-VVSWSAMIGGLAQ 583

Query: 599 HGN-----EIIGRRV 608
           HG+     E+ GR V
Sbjct: 584 HGHGKRALELFGRMV 598



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 134/558 (24%), Positives = 264/558 (47%), Gaps = 17/558 (3%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            SA T S  L+  + A     G  +H  +L  GF  +L   + L+  Y +      A  +
Sbjct: 2   RSAGTISQQLTRYAAAQALLPGAHLHANLLKSGFLASLR--NHLISFYSKCRRPCCARRV 59

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P+    +W+ ++ A+     P   ++ ++ M+AEGV  N  +   +++      L 
Sbjct: 60  FDEIPDPCHVSWSSLVTAYSNNGLPRSAIQAFHGMRAEGVCCNEFALPVVLKCVPDAQL- 118

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
             G Q+H+  +  G+   ++FVANALV  Y   G + +A++ FD    + + +SWN ++S
Sbjct: 119 --GAQVHAMAMATGF-GSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWNGLMS 175

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y   D   DA+++F  M     +P+   F   +N  + + N+  G+Q+H  V ++G++ 
Sbjct: 176 AYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRMGYEK 235

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V   +AL DMY K   ++ +  +FE  P   +   N+L++  + +G+   A+E+   M
Sbjct: 236 -DVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQM 294

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              G+  +   LS+ LKA + + + +LG  R +H   IK+  +S+  +   L+D Y++  
Sbjct: 295 KSSGLVPNVFMLSSILKACAGAGAFDLG--RQIHGFMIKANADSDDYIGVGLVDMYAKNH 352

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            ++ + +VF+ +   +++ + ++++G S  G   EA  +   + + GL  ++ T   VL 
Sbjct: 353 FLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAAVLK 412

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
                      + V +++    G   D    + +ID   +   L  A  + ++    GD 
Sbjct: 413 STASLEAASATRQV-HALAEKIGFIFDAHVVNGLIDSYWKCSCLSDAIRVFEECS-SGDI 470

Query: 587 MMWSSLLRSCRV--HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           +  +S++ +     HG   I   +  +   LEP  F V S + N  + +  +E   Q+  
Sbjct: 471 IAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPF-VLSSLLNACASLSAYEQGKQVHA 529

Query: 645 TALARKLTRD--IGHSLI 660
             + R+   D   G++L+
Sbjct: 530 HLIKRQFMSDAFAGNALV 547


>gi|225440839|ref|XP_002276333.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 705

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 164/570 (28%), Positives = 310/570 (54%), Gaps = 10/570 (1%)

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           + E++  G +    T   V+  C +      G  IH  V   G  L+ ++ + LVD+Y++
Sbjct: 18  FRELIRCGARPDNYTLPFVIRACRDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYVK 77

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
                 A  LFD++ ER+L TW +M+  + E  + +E L ++ KM+ EGV P+ ++   +
Sbjct: 78  CREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDKVAMVTV 137

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           V  C+    + + + +  ++ +  +  +++ +  A++D Y+ CG +  A++ FD +   +
Sbjct: 138 VFACAKLGAMHKARIIDDYIQRKKF-QLDVILGTAMIDMYAKCGCVESAREIFDRMEEKN 196

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           VISW+++++ Y  +     AL+LF  M      P   +    L   S   N+  G+ IH 
Sbjct: 197 VISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMGRLIHH 256

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            V K G D     V +AL DMYGKC  IE +  +F+  P R L     ++      GN  
Sbjct: 257 IVYKFGLDLDHF-VCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAECGNAN 315

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNIAV 454
           +++ +F  M +EG+  D+V + T      V A A LG+    R +     +  F+ ++ +
Sbjct: 316 ESLVLFDKMREEGVVPDKVAMVTV-----VFACAKLGAMHKARTIDDYIQRKKFQLDVIL 370

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +++D +++CG +E + ++F+++   NV+ +++++  Y  +G GR+ALD+  +M++ G+
Sbjct: 371 GTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGI 430

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           +P+K+T + +L  C+H+G+V+EG   F+ M   Y + AD +HY+C++D+LGRAG LD+A 
Sbjct: 431 LPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEAL 490

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           +L++      D  +W + L +CR H + ++  + A  L+EL+P +   Y  +SN Y+  G
Sbjct: 491 KLIESMTVEKDEGLWGAFLGACRTHKDVVLAEKAATSLLELQPQNPGHYILLSNIYANAG 550

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +E   + R+    R+L +  G + IEV++
Sbjct: 551 RWEDVAKTRDLMSQRRLKKIPGWTWIEVDN 580



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 95/376 (25%), Positives = 198/376 (52%), Gaps = 2/376 (0%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D +VK   +  A+ LFD+M  RD+VT+ ++I G  +     ++L L+++M   G+    
Sbjct: 72  VDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPDK 131

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
               +V+  C+  G   +   I   +    F L++ +G+ ++D+Y + G    A ++FD 
Sbjct: 132 VAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGCVESAREIFDR 191

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + E+N+ +W+ M+ A+    +  + L ++  M + G+ P+ ++   ++  CS    L  G
Sbjct: 192 MEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYACSDLKNLQMG 251

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           + +H  V K G +D++ FV  ALVD Y  C  + +A+  FD +P  D+++W  ++  YA+
Sbjct: 252 RLIHHIVYKFG-LDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTWTVMIGGYAE 310

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                ++L LF +M+     P   + V  +   ++ G ++  + I  Y+ +  F    V 
Sbjct: 311 CGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQRKKF-QLDVI 369

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           + +A+ DM+ KC  +ES+  +F+    +++   ++++ +  + G  + A+++F  M+  G
Sbjct: 370 LGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSG 429

Query: 411 IGLDEVTLSTTLKALS 426
           I  +++TL + L A S
Sbjct: 430 ILPNKITLVSLLYACS 445



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 189/375 (50%), Gaps = 2/375 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M    ++P    + T+   C  +  +  + ++D Y Q    QL++      ID + K G 
Sbjct: 122 MREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKFQLDVILGTAMIDMYAKCGC 181

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + SA+++FD M  +++++++ +I+  G     ++AL L+  M+S G+     T +S+L  
Sbjct: 182 VESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLSSGMLPDKITLASLLYA 241

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS+      G  IH  V   G  L+ ++ + LVD+Y +      A  LFD++PER+L TW
Sbjct: 242 CSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCREIEDARFLFDKMPERDLVTW 301

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            +M+  + E    +E L +++KM+ EGV P+ ++   +V  C+    + + + +  ++ +
Sbjct: 302 TVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR 361

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
             +  +++ +  A++D ++ CG +  A++ FD +   +VISW+++++ Y  +     AL+
Sbjct: 362 KKF-QLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALD 420

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  M      P+  + V  L   S  G V  G +    + +       V   + + D+ 
Sbjct: 421 LFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWEDYSVRADVKHYTCVVDLL 480

Query: 360 GKCNVIESSVAVFES 374
           G+   ++ ++ + ES
Sbjct: 481 GRAGRLDEALKLIES 495



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 136/277 (49%), Gaps = 1/277 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           MLS+ +LP   T+ +L   C+ +  L    L+     +    L+ +     +D + K   
Sbjct: 223 MLSSGMLPDKITLASLLYACSDLKNLQMGRLIHHIVYKFGLDLDHFVCAALVDMYGKCRE 282

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ LFD+MP RD+VT+ ++I G  +  +  ++L L+D+M   G+        +V+  
Sbjct: 283 IEDARFLFDKMPERDLVTWTVMIGGYAECGNANESLVLFDKMREEGVVPDKVAMVTVVFA 342

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+  G   +   I   +    F L++ +G+ ++D++ + G    A ++FD + E+N+ +W
Sbjct: 343 CAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRMEEKNVISW 402

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           + M+ A+    +  + L ++  M   G+ PN ++   ++  CS   L++EG +  S + +
Sbjct: 403 SAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLRFFSLMWE 462

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
              V  ++     +VD     G L EA K  + + V+
Sbjct: 463 DYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVE 499


>gi|222641140|gb|EEE69272.1| hypothetical protein OsJ_28537 [Oryza sativa Japonica Group]
          Length = 784

 Score =  298 bits (764), Expect = 4e-78,   Method: Compositional matrix adjust.
 Identities = 185/651 (28%), Positives = 342/651 (52%), Gaps = 34/651 (5%)

Query: 36  CQPNPQL---------------NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYN 79
           C P+ QL               +++ +N  +  +   G ++ A+++FDE  + R+ V++N
Sbjct: 19  CVPDAQLGAQVHAMAMATGFGSDVFVANALVAMYGGFGFMDDARRVFDEAGSERNAVSWN 78

Query: 80  LLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL 139
            L+S   K      A+ ++ EMV  GI+ +   FS V++ C+ +     G Q+H  V+ +
Sbjct: 79  GLMSAYVKNDQCGDAIQVFGEMVWSGIQPTEFGFSCVVNACTGSRNIDAGRQVHAMVVRM 138

Query: 140 GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE-VLRM 198
           G+  +++  + LVD+Y++MG    A  +F+++P+ ++ +WN ++   C L+  D   + +
Sbjct: 139 GYEKDVFTANALVDMYVKMGRVDIASVIFEKMPDSDVVSWNALISG-CVLNGHDHRAIEL 197

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
             +MK+ G+ PN      +++ C+     D G+Q+H  +IK    D + ++   LVD Y+
Sbjct: 198 LLQMKSSGLVPNVFMLSSILKACAGAGAFDLGRQIHGFMIKAN-ADSDDYIGVGLVDMYA 256

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ---LCRKRPSIRS 315
               L +A K FD++   D+I WN+++S  +      +A  +F+ ++   L   R ++ +
Sbjct: 257 KNHFLDDAMKVFDWMSHRDLILWNALISGCSHGGRHDEAFSIFYGLRKEGLGVNRTTLAA 316

Query: 316 FVEF---LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
            ++    L  AS T      +Q+H    K+GF     HV + L D Y KC+ +  ++ VF
Sbjct: 317 VLKSTASLEAASAT------RQVHALAEKIGFIF-DAHVVNGLIDSYWKCSCLSDAIRVF 369

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           E      +    S++T+L    + + A+++F  M+ +G+  D   LS+ L A +  ++  
Sbjct: 370 EECSSGDIIAVTSMITALSQCDHGEGAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYE 429

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
            G  + +H   IK  F S+     +L+  Y++CG IE +   F  +P   VV +++++ G
Sbjct: 430 QG--KQVHAHLIKRQFMSDAFAGNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGG 487

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552
            +++G G+ AL++   M+  G+ P+ +T   VL  CNH+G+V E +  FNSMK ++GID 
Sbjct: 488 LAQHGHGKRALELFGRMVDEGINPNHITMTSVLCACNHAGLVDEAKRYFNSMKEMFGIDR 547

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL 612
             +HYSCMID+LGRAG LD A EL+   P   +  +W +LL + RVH +  +G+  A  L
Sbjct: 548 TEEHYSCMIDLLGRAGKLDDAMELVNSMPFQANASVWGALLGASRVHKDPELGKLAAEKL 607

Query: 613 MELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             LEP     +  ++N Y+  G +    ++R+      + ++   S +EV 
Sbjct: 608 FILEPEKSGTHVLLANTYASSGMWNEVAKVRKLMKDSNIKKEPAMSWVEVK 658


>gi|356523677|ref|XP_003530462.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Glycine max]
          Length = 852

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 184/667 (27%), Positives = 340/667 (50%), Gaps = 13/667 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC---QPNPQLNIYSSNRTIDDFVKS 57
           M S K+     T + +   C+ I      L L  +C   Q   + ++ + +  +D + K 
Sbjct: 129 MRSLKIPHDYATFSVVLKACSGIEDYG--LGLQVHCLAIQMGFENDVVTGSALVDMYSKC 186

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
             L+ A ++F EMP R++V ++ +I+G  +     + L L+ +M+  G+  S ST++SV 
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C+    +  G Q+H   L   F  +  IG+  +D+Y +      A  +F+ LP     
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSIIGTATLDMYAKCDRMSDAWKVFNTLPNPPRQ 306

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           ++N ++  +    +  + L ++  ++   +  + +S    +  CS+     EG QLH   
Sbjct: 307 SYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSVIKGHLEGIQLHGLA 366

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K G +  NI VAN ++D Y  CG+L+EA   FD +   D +SWN+I++ +   + I   
Sbjct: 367 VKCG-LGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKT 425

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSAL 355
           L LF  M      P   ++   +   +    + +G +IHG + K  +G D     V SAL
Sbjct: 426 LSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIVKSGMGLDW---FVGSAL 482

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMYGKC ++  +  + +    ++    NS+++        ++A   F  M++ G+  D 
Sbjct: 483 VDMYGKCGMLMEAEKIHDRLEEKTTVSWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDN 542

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T +T L   +  A+  LG  + +H   +K    S++ ++ +L+D YS+CG+++ S  +F
Sbjct: 543 FTYATVLDVCANMATIELG--KQIHAQILKLNLHSDVYIASTLVDMYSKCGNMQDSRLMF 600

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           EK P  + V +++++  Y+ +G G +A+ + E M    + P+   F+ VL  C H G V 
Sbjct: 601 EKTPKRDYVTWSAMICAYAYHGHGEQAIKLFEEMQLLNVKPNHTIFISVLRACAHMGYVD 660

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           +G   F  M+S YG+D   +HYSCM+D+LGR+  +++A +L++      D ++W +LL +
Sbjct: 661 KGLHYFQIMQSHYGLDPHMEHYSCMVDLLGRSDQVNEALKLIESMHFEADDVIWRTLLSN 720

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           C++ GN  +  +  N L++L+P D + Y  ++N Y+ +G +    +IR      KL ++ 
Sbjct: 721 CKMQGNVEVAEKAFNSLLQLDPQDSSAYVLLANVYANVGMWGEVAKIRSIMKNCKLKKEP 780

Query: 656 GHSLIEV 662
           G S IEV
Sbjct: 781 GCSWIEV 787



 Score =  223 bits (567), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 159/612 (25%), Positives = 292/612 (47%), Gaps = 27/612 (4%)

Query: 21  TSIVP--LSSSLLLDSYCQPN------------PQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           TS VP    ++ L+  YC+ +            P  ++ S N  I  + + G++  A+ L
Sbjct: 35  TSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRMPHRDVISWNTMIFGYAEIGNMGFAQSL 94

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD MP RD+V++N L+S        ++++ ++  M S  I    +TFS VL  CS    Y
Sbjct: 95  FDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFVRMRSLKIPHDYATFSVVLKACSGIEDY 154

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G+Q+HC  + +GF  ++  GS LVD+Y +      A  +F E+PERNL  W+ ++  +
Sbjct: 155 GLGLQVHCLAIQMGFENDVVTGSALVDMYSKCKKLDGAFRIFREMPERNLVCWSAVIAGY 214

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +  R  E L+++  M   G+  +  ++  + R C+       G QLH H +K  +   +
Sbjct: 215 VQNDRFIEGLKLFKDMLKVGMGVSQSTYASVFRSCAGLSAFKLGTQLHGHALKSDFAYDS 274

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           I +  A +D Y+ C  + +A K F+ +P     S+N+I+  YA  D    ALE+F  +Q 
Sbjct: 275 I-IGTATLDMYAKCDRMSDAWKVFNTLPNPPRQSYNAIIVGYARQDQGLKALEIFQSLQR 333

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNV 364
                   S    L   S       G Q+HG   K  LGF+   + V + + DMYGKC  
Sbjct: 334 TYLSFDEISLSGALTACSVIKGHLEGIQLHGLAVKCGLGFN---ICVANTILDMYGKCGA 390

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +  +F+    R     N+++ +   +  I   + +F  M+   +  D+ T  + +KA
Sbjct: 391 LVEACTIFDDMERRDAVSWNAIIAAHEQNEEIVKTLSLFVSMLRSTMEPDDFTYGSVVKA 450

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +   + N G    +H   +KSG   +  V  +L+D Y +CG +  + ++ +++     V
Sbjct: 451 CAGQQALNYG--MEIHGRIVKSGMGLDWFVGSALVDMYGKCGMLMEAEKIHDRLEEKTTV 508

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + SI++G+S       A      M++ G+IPD  T+  VL  C +   ++ G+ +   +
Sbjct: 509 SWNSIISGFSSQKQSENAQRYFSQMLEMGVIPDNFTYATVLDVCANMATIELGKQIHAQI 568

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
             +  + +D    S ++DM  + G +  +  + ++TP   D + WS+++ +   HG+   
Sbjct: 569 LKL-NLHSDVYIASTLVDMYSKCGNMQDSRLMFEKTP-KRDYVTWSAMICAYAYHGH--- 623

Query: 605 GRRVANILMELE 616
           G +   +  E++
Sbjct: 624 GEQAIKLFEEMQ 635



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 135/581 (23%), Positives = 261/581 (44%), Gaps = 48/581 (8%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TFS +L  CSN      G Q H +++   F   +Y+ + LV  Y +      A  +FD +
Sbjct: 8   TFSHILQKCSNLKALNPGKQAHAQMIVTSFVPTIYVANCLVQFYCKSSNMNYAFKVFDRM 67

Query: 172 PERNLATWNLMLRAFCEL-----------SRPDEVLRMYN-------------------- 200
           P R++ +WN M+  + E+           + P+  +  +N                    
Sbjct: 68  PHRDVISWNTMIFGYAEIGNMGFAQSLFDTMPERDVVSWNSLLSCYLHNGVNRKSIEIFV 127

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M++  +  +  +F  +++ CS       G Q+H   I++G+ + ++   +ALVD YS C
Sbjct: 128 RMRSLKIPHDYATFSVVLKACSGIEDYGLGLQVHCLAIQMGFEN-DVVTGSALVDMYSKC 186

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
             L  A + F  +P  +++ W+++++ Y   D   + L+LF  M       S  ++    
Sbjct: 187 KKLDGAFRIFREMPERNLVCWSAVIAGYVQNDRFIEGLKLFKDMLKVGMGVSQSTYASVF 246

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
              +       G Q+HG+  K  F + S+ + +A  DMY KC+ +  +  VF + P    
Sbjct: 247 RSCAGLSAFKLGTQLHGHALKSDFAYDSI-IGTATLDMYAKCDRMSDAWKVFNTLPNPPR 305

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
           +  N+++           A+E+F  +    +  DE++LS  L A SV    +L   + LH
Sbjct: 306 QSYNAIIVGYARQDQGLKALEIFQSLQRTYLSFDEISLSGALTACSV-IKGHLEGIQ-LH 363

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             A+K G   NI V+ +++D Y +CG +  +  +F+ +   + V + +I+  + +N    
Sbjct: 364 GLAVKCGLGFNICVANTILDMYGKCGALVEACTIFDDMERRDAVSWNAIIAAHEQNEEIV 423

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCN-----HSGMVKEGQLVFNSMKSVYGIDADRQ 555
           + L +   M++  + PD  T+  V+  C      + GM   G++V    KS  G+D    
Sbjct: 424 KTLSLFVSMLRSTMEPDDFTYGSVVKACAGQQALNYGMEIHGRIV----KSGMGLDWFVG 479

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
             S ++DM G+ G+L +AE++  +       + W+S++            +R  + ++E+
Sbjct: 480 --SALVDMYGKCGMLMEAEKIHDRLE-EKTTVSWNSIISGFSSQKQSENAQRYFSQMLEM 536

Query: 616 EPV-DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
             + D   Y+ V +  + +   E+  QI    L   L  D+
Sbjct: 537 GVIPDNFTYATVLDVCANMATIELGKQIHAQILKLNLHSDV 577


>gi|449499218|ref|XP_004160754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  298 bits (764), Expect = 5e-78,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 321/622 (51%), Gaps = 13/622 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N     + K   +++A +LFD+M  R+  ++ +LI+G  +          + EM S GI 
Sbjct: 109 NHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIF 168

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
                +S +L +C        G  +H +++  GF  + ++ + L+++Y ++     +  +
Sbjct: 169 PDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKV 228

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+ + E N+ +WN M+  F       +   ++ +M  EGV P+  +F  + +  +IGML 
Sbjct: 229 FNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAK--AIGMLR 286

Query: 228 D--EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD--FIPVDDVISWNS 283
           D  + K++  + ++LG VD N  V  AL+D  S CGSL EA+  F+  FI       WN+
Sbjct: 287 DVNKAKEVSGYALELG-VDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNA 345

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++S Y        ALELF +M  C+    +   ++    N  +    +  GK++H    K
Sbjct: 346 MISGYLRSGFNEKALELFAKM--CQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIK 403

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G +   V + +A+ + Y KC  +E    VF     R L    SL+T+         A+E
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M  EGI  ++ T S+ L  +S +    L   + +H    K G + +  +  +L+D 
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVL--VSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDM 521

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG +  + +VF +I + + V +T+I+ G++++G+  +AL +   M+Q G+ P+ VTF
Sbjct: 522 YAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTF 581

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           LCVL  C+H G+V+EG   F  MK  YG+  + +HY+C++D+L R G L+ A E + + P
Sbjct: 582 LCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMP 641

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              + M+W +LL +CRVHGN  +G   A  ++  +  + A Y  +SN Y E G ++  + 
Sbjct: 642 VEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLS 701

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R     + + ++ G S I VN
Sbjct: 702 LRHVMKEQGVKKEPGCSWISVN 723



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 209/460 (45%), Gaps = 16/460 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           LN+Y+  + I+D         + K+F+ M   ++V++N +I+G         A  L+  M
Sbjct: 213 LNMYAKLQEIED---------SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +  G+   A TF  V           +  ++    L LG   N  +G+ L+D+  + G  
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSL 323

Query: 162 VRALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
             A  +F+   +  R  A WN M+  +      ++ L ++ KM    +  +  ++C +  
Sbjct: 324 QEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFN 383

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVN-IFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             +    L  GK++H+  IK G ++VN + ++NA+ + Y+ CGSL + +K F+ +   D+
Sbjct: 384 AIAALKCLSLGKKVHARAIKSG-LEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDL 442

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ISW S+V+ Y+       A+E+F  M+     P+  +F   L   +    + +G+Q+HG 
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGI 502

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + K+G D     ++SAL DMY KC  +  +  VF            +++      G + D
Sbjct: 503 ICKVGLDMDKC-IESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD 561

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+++F  MV  G+  + VT    L A S       G  +         G    +     +
Sbjct: 562 ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEG-LQYFKLMKKTYGLVPEMEHYACI 620

Query: 459 MDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG 497
           +D  SR GH+  + +   ++P  PN + + +++     +G
Sbjct: 621 VDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHG 660



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 141/315 (44%), Gaps = 12/315 (3%)

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA-NALVDFYSACGSLIEAKKSFDFIPV 275
           ++R C     L + K +H  ++K  + + +  V  N +   YS C  +  A + FD +  
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +  SW  +++  A+  L  D  E F  MQ     P   ++   L       ++  G  +
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H  +   GF   +  V +AL +MY K   IE S  VF +    ++   N+++T    +  
Sbjct: 194 HAQIVIRGFTSHTF-VSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDL 252

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             DA ++F  M+ EG+  D  T     KA+ +    N    + +   A++ G +SN  V 
Sbjct: 253 YLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVN--KAKEVSGYALELGVDSNTLVG 310

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVC-----FTSIMNGYSRNGMGREALDMLEVMI 510
            +L+D  S+CG ++ +  +F    S  + C     + ++++GY R+G   +AL++   M 
Sbjct: 311 TALIDMNSKCGSLQEARSIFN---SHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMC 367

Query: 511 QRGLIPDKVTFLCVL 525
           Q  +  D  T+  V 
Sbjct: 368 QNDIYLDHYTYCSVF 382


>gi|356506884|ref|XP_003522204.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g47840-like [Glycine max]
          Length = 752

 Score =  298 bits (763), Expect = 6e-78,   Method: Compositional matrix adjust.
 Identities = 177/623 (28%), Positives = 321/623 (51%), Gaps = 7/623 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
           N+   N  +   VK G L  ++ +FD+M  RD +++  LI+G        +AL L+  M 
Sbjct: 89  NMLELNSELKQLVKQGQLCKSRYMFDKMTHRDEISWTTLIAGYVNASDSYEALILFSNMW 148

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  G++      S  L  C        G  +H   +  G   ++++ S L+D+YM++G  
Sbjct: 149 VQPGLQRDQFMISVALKACGLGVNICFGELLHGFSVKSGLINSVFVSSALIDMYMKVGKI 208

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            +   +F ++ +RN+ +W  ++          E L  +++M    V  +  +F   ++  
Sbjct: 209 EQGCRVFKKMTKRNVVSWTAIIAGLVHAGYNMEALLYFSEMWISKVGYDSHTFAIALKAS 268

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +   LL  GK +H+  IK G+ D + FV N L   Y+ CG      + F+ + + DV+SW
Sbjct: 269 ADSSLLHHGKAIHTQTIKQGF-DESSFVINTLATMYNKCGKADYVMRLFEKMKMPDVVSW 327

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            ++++ Y        A+E F RM+     P+  +F   ++  +      +G+QIHG+V +
Sbjct: 328 TTLITTYVQKGEEEHAVEAFKRMRKSNVSPNKYTFAAVISACANLAIAKWGEQIHGHVLR 387

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LG    ++ V +++  +Y K  +++S+  VF     + +   ++++      G  K+A +
Sbjct: 388 LGLV-DALSVANSIVTLYSKSGLLKSASLVFHGITRKDIISWSTIIAVYSQGGYAKEAFD 446

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
              +M  EG   +E  LS+ L   SV  S A L   + +H   +  G +    V  +L+ 
Sbjct: 447 YLSWMRREGPKPNEFALSSVL---SVCGSMALLEQGKQVHAHVLCIGIDHEAMVHSALIS 503

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+CG +E + ++F  +   N++ +T+++NGY+ +G  +EA+++ E +   GL PD VT
Sbjct: 504 MYSKCGSVEEASKIFNGMKINNIISWTAMINGYAEHGYSQEAINLFEKISSVGLKPDYVT 563

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ VL  C+H+GMV  G   F  M + Y I   ++HY C+ID+L RAG L +AE +++  
Sbjct: 564 FIGVLTACSHAGMVDLGFYYFMLMTNEYQISPSKEHYGCIIDLLCRAGRLSEAEHMIRSM 623

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D ++WS+LLRSCRVHG+   GR  A  L+ L+P     +  ++N Y+  G ++ + 
Sbjct: 624 PCYTDDVVWSTLLRSCRVHGDVDRGRWTAEQLLRLDPNSAGTHIALANIYAAKGRWKEAA 683

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
            IR+   ++ + ++ G S + VN
Sbjct: 684 HIRKLMKSKGVIKERGWSWVNVN 706


>gi|356519887|ref|XP_003528600.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 813

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 187/626 (29%), Positives = 338/626 (53%), Gaps = 15/626 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  +  +   G    A K+FDEMP RD V++N +I  C      ++AL  +  MV
Sbjct: 171 DVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDKVSWNTVIGLCSLHGFYEEALGFFRVMV 230

Query: 103 SH--GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMG 159
           +   GI+    T  SVL VC+          +HC  L +G  G ++ +G+ LVD+Y + G
Sbjct: 231 AAKPGIQPDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCG 290

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               +  +FDE+ ERN+ +WN ++ +F    +  + L ++  M  EG+ PN ++   M+ 
Sbjct: 291 SEKASKKVFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLP 350

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                 L   G ++H   +K+  ++ ++F++N+L+D Y+  GS   A   F+ + V +++
Sbjct: 351 VLGELGLFKLGMEVHGFSLKMA-IESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIV 409

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN++++ +A   L ++A+EL  +MQ   + P+  +F   L   +R G +  GK+IH  +
Sbjct: 410 SWNAMIANFARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARI 469

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            ++G     + V +ALTDMY KC  +  +  VF  +  R     N L+     + +  ++
Sbjct: 470 IRVG-SSLDLFVSNALTDMYSKCGCLNLAQNVFNISV-RDEVSYNILIIGYSRTNDSLES 527

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSC 456
           + +F  M   G+  D V+         VSA ANL   R    +H   ++  F +++ V+ 
Sbjct: 528 LRLFSEMRLLGMRPDIVSFMGV-----VSACANLAFIRQGKEIHGLLVRKLFHTHLFVAN 582

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+D Y+RCG I+L+ +VF  I + +V  + +++ GY   G    A+++ E M + G+  
Sbjct: 583 SLLDLYTRCGRIDLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEY 642

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D V+F+ VL+ C+H G++++G+  F  M  +  I+    HY+CM+D+LGRAG++++A +L
Sbjct: 643 DSVSFVAVLSACSHGGLIEKGRKYFKMMCDL-NIEPTHTHYACMVDLLGRAGLMEEAADL 701

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           ++      D  +W +LL +CR+HGN  +G   A  L EL+P     Y  +SN Y+E   +
Sbjct: 702 IRGLSIIPDTNIWGALLGACRIHGNIELGLWAAEHLFELKPQHCGYYILLSNMYAEAERW 761

Query: 637 EVSMQIRETALARKLTRDIGHSLIEV 662
           + + ++RE   +R   ++ G S ++V
Sbjct: 762 DEANKVRELMKSRGAKKNPGCSWVQV 787



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 138/534 (25%), Positives = 260/534 (48%), Gaps = 45/534 (8%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKK 65
           P + T+ ++ P C        + ++  Y      L  ++   N  +D + K G   ++KK
Sbjct: 238 PDLVTVVSVLPVCAETEDKVMARIVHCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKK 297

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           +FDE+  R+++++N +I+          AL ++  M+  G++ ++ T SS+L V    G 
Sbjct: 298 VFDEIDERNVISWNAIITSFSFRGKYMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGL 357

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
           +  G+++H   L +    +++I + L+D+Y + G S  A  +F+++  RN+ +WN M+  
Sbjct: 358 FKLGMEVHGFSLKMAIESDVFISNSLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIAN 417

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           F       E + +  +M+A+G  PN ++F  ++  C+    L+ GK++H+ +I++G   +
Sbjct: 418 FARNRLEYEAVELVRQMQAKGETPNNVTFTNVLPACARLGFLNVGKEIHARIIRVG-SSL 476

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           ++FV+NAL D YS CG L  A+  F+ I V D +S+N ++  Y+  +   ++L LF  M+
Sbjct: 477 DLFVSNALTDMYSKCGCLNLAQNVFN-ISVRDEVSYNILIIGYSRTNDSLESLRLFSEMR 535

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
           L   RP I SF+  ++  +    +  GK+IHG + +  F H  + V ++L D+Y +C  I
Sbjct: 536 LLGMRPDIVSFMGVVSACANLAFIRQGKEIHGLLVRKLF-HTHLFVANSLLDLYTRCGRI 594

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           + +  VF     + +   N+++      G +  A+ +F  M ++G+  D V+    L A 
Sbjct: 595 DLATKVFYCIQNKDVASWNTMILGYGMRGELDTAINLFEAMKEDGVEYDSVSFVAVLSAC 654

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           S             H   I+ G      + C L        +IE +H  +         C
Sbjct: 655 S-------------HGGLIEKG-RKYFKMMCDL--------NIEPTHTHY--------AC 684

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGL--IPDKVTFLCVLAGCNHSGMVKEG 537
              ++    R G+  EA D++     RGL  IPD   +  +L  C   G ++ G
Sbjct: 685 MVDLL---GRAGLMEEAADLI-----RGLSIIPDTNIWGALLGACRIHGNIELG 730



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 157/606 (25%), Positives = 282/606 (46%), Gaps = 35/606 (5%)

Query: 2   LSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
           L T   P +  + TL  T +    + +  LL  +   +  L        I  +   GH +
Sbjct: 32  LQTSNPPNLLQLCTLCDTLSQTKQVHAYSLLHGFLPRSVSL----CASLILQYASFGHPS 87

Query: 62  SAKKLFDEMPA--RDMVTYNLLI---SGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           ++  LF    A  R    +N LI   S  G F         Y+ MV  G+K    T+  V
Sbjct: 88  NSLLLFQHSVAYSRSAFLWNTLIRANSIAGVF----DGFGTYNTMVRAGVKPDECTYPFV 143

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L VCS+     +G ++H     LGF  ++++G+ L+  Y   G    A+ +FDE+PER+ 
Sbjct: 144 LKVCSDFVEVRKGREVHGVAFKLGFDGDVFVGNTLLAFYGNCGLFGDAMKVFDEMPERDK 203

Query: 177 ATWNLMLRAFCEL-SRPDEVLRMYNKMKAE--GVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            +WN ++   C L    +E L  +  M A   G++P+ ++   ++  C+        + +
Sbjct: 204 VSWNTVI-GLCSLHGFYEEALGFFRVMVAAKPGIQPDLVTVVSVLPVCAETEDKVMARIV 262

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H + +K+G +  ++ V NALVD Y  CGS   +KK FD I   +VISWN+I++ ++    
Sbjct: 263 HCYALKVGLLGGHVKVGNALVDVYGKCGSEKASKKVFDEIDERNVISWNAIITSFSFRGK 322

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             DAL++F  M     RP+  +    L      G    G ++HG+  K+  +   V + +
Sbjct: 323 YMDALDVFRLMIDEGMRPNSVTISSMLPVLGELGLFKLGMEVHGFSLKMAIE-SDVFISN 381

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           +L DMY K      +  +F     R++   N+++ +   +    +AVE+   M  +G   
Sbjct: 382 SLIDMYAKSGSSRIASTIFNKMGVRNIVSWNAMIANFARNRLEYEAVELVRQMQAKGETP 441

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           + VT +  L A +     N+G  + +H   I+ G   ++ VS +L D YS+CG + L+  
Sbjct: 442 NNVTFTNVLPACARLGFLNVG--KEIHARIIRVGSSLDLFVSNALTDMYSKCGCLNLAQN 499

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VF  I   + V +  ++ GYSR     E+L +   M   G+ PD V+F+ V++ C +   
Sbjct: 500 VF-NISVRDEVSYNILIIGYSRTNDSLESLRLFSEMRLLGMRPDIVSFMGVVSACANLAF 558

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYS------CMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           +++G       K ++G+   +  ++       ++D+  R G +D A ++        D  
Sbjct: 559 IRQG-------KEIHGLLVRKLFHTHLFVANSLLDLYTRCGRIDLATKVFYCIQ-NKDVA 610

Query: 588 MWSSLL 593
            W++++
Sbjct: 611 SWNTMI 616


>gi|15237290|ref|NP_200097.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171558|sp|Q9FLX6.1|PP430_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At5g52850, chloroplastic; Flags: Precursor
 gi|10177099|dbj|BAB10433.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332008885|gb|AED96268.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 893

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 186/616 (30%), Positives = 320/616 (51%), Gaps = 12/616 (1%)

Query: 52  DDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           D + K G    A +LF  +   D +++ ++IS     R  ++AL  Y EMV  G+  +  
Sbjct: 167 DLYSKCGQFKEACELFSSLQNADTISWTMMISSLVGARKWREALQFYSEMVKAGVPPNEF 226

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TF  +L   S  G    G  IH  ++  G  LN+ + + LVD Y +      A+ + +  
Sbjct: 227 TFVKLLGASSFLGLEF-GKTIHSNIIVRGIPLNVVLKTSLVDFYSQFSKMEDAVRVLNSS 285

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            E+++  W  ++  F    R  E +  + +M++ G++PN  ++  ++  CS    LD GK
Sbjct: 286 GEQDVFLWTSVVSGFVRNLRAKEAVGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGK 345

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           Q+HS  IK+G+ D +  V NALVD Y  C  S +EA + F  +   +V+SW +++    D
Sbjct: 346 QIHSQTIKVGFED-STDVGNALVDMYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVD 404

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
           +  + D   L   M      P++ +    L   S+  +V    +IH Y+ +   D G + 
Sbjct: 405 HGFVQDCFGLLMEMVKREVEPNVVTLSGVLRACSKLRHVRRVLEIHAYLLRRHVD-GEMV 463

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V ++L D Y     ++ +  V  S   R      SL+T     G  + A+ +  +M  +G
Sbjct: 464 VGNSLVDAYASSRKVDYAWNVIRSMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDG 523

Query: 411 IGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           I +D+++L        +SASANLG+    + LHC ++KSGF    +V  SL+D YS+CG 
Sbjct: 524 IRMDQLSLPGF-----ISASANLGALETGKHLHCYSVKSGFSGAASVLNSLVDMYSKCGS 578

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +E + +VFE+I +P+VV +  +++G + NG    AL   E M  +   PD VTFL +L+ 
Sbjct: 579 LEDAKKVFEEIATPDVVSWNGLVSGLASNGFISSALSAFEEMRMKETEPDSVTFLILLSA 638

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C++  +   G   F  MK +Y I+   +HY  ++ +LGRAG L++A  +++      + M
Sbjct: 639 CSNGRLTDLGLEYFQVMKKIYNIEPQVEHYVHLVGILGRAGRLEEATGVVETMHLKPNAM 698

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           ++ +LLR+CR  GN  +G  +AN  + L P D A+Y  +++ Y E G+ E++ + R    
Sbjct: 699 IFKTLLRACRYRGNLSLGEDMANKGLALAPSDPALYILLADLYDESGKPELAQKTRNLMT 758

Query: 648 ARKLTRDIGHSLIEVN 663
            ++L++ +G S +EV 
Sbjct: 759 EKRLSKKLGKSTVEVQ 774



 Score =  202 bits (515), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 160/607 (26%), Positives = 296/607 (48%), Gaps = 23/607 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPL----SSSLLLDSYCQPNPQLNIYSS----NRTIDDFVKS 57
            L R   +  L  +C  I+      SS + L  +C P  +  +  +    N  +  ++K+
Sbjct: 13  FLSRTNELGNLQKSCIRILSFCESNSSRIGLHIHC-PVIKFGLLENLDLCNNLLSLYLKT 71

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
             + +A+KLFDEM  R +  + ++IS   K +    AL L++EM++ G   +  TFSSV+
Sbjct: 72  DGIWNARKLFDEMSHRTVFAWTVMISAFTKSQEFASALSLFEEMMASGTHPNEFTFSSVV 131

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C+     + G ++H  V+  GF  N  +GS L DLY + G    A +LF  L   +  
Sbjct: 132 RSCAGLRDISYGGRVHGSVIKTGFEGNSVVGSSLSDLYSKCGQFKEACELFSSLQNADTI 191

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W +M+ +     +  E L+ Y++M   GV PN  +F  ++ G S  + L+ GK +HS++
Sbjct: 192 SWTMMISSLVGARKWREALQFYSEMVKAGVPPNEFTFVKLL-GASSFLGLEFGKTIHSNI 250

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           I  G + +N+ +  +LVDFYS    + +A +  +     DV  W S+VS +       +A
Sbjct: 251 IVRG-IPLNVVLKTSLVDFYSQFSKMEDAVRVLNSSGEQDVFLWTSVVSGFVRNLRAKEA 309

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           +  F  M+    +P+  ++   L+  S   ++ FGKQIH    K+GF+  S  V +AL D
Sbjct: 310 VGTFLEMRSLGLQPNNFTYSAILSLCSAVRSLDFGKQIHSQTIKVGFED-STDVGNALVD 368

Query: 358 MYGKCNVIESSVA-VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           MY KC+  E   + VF +    ++    +L+  L+  G ++D   +   MV   +  + V
Sbjct: 369 MYMKCSASEVEASRVFGAMVSPNVVSWTTLILGLVDHGFVQDCFGLLMEMVKREVEPNVV 428

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           TLS  L+A   S   ++     +H   ++   +  + V  SL+DAY+    ++ +  V  
Sbjct: 429 TLSGVLRA--CSKLRHVRRVLEIHAYLLRRHVDGEMVVGNSLVDAYASSRKVDYAWNVIR 486

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            +   + + +TS++  ++  G    AL ++  M   G+  D+++    ++   + G ++ 
Sbjct: 487 SMKRRDNITYTSLVTRFNELGKHEMALSVINYMYGDGIRMDQLSLPGFISASANLGALET 546

Query: 537 GQ-LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ--TPGGGDCMMWSSLL 593
           G+ L   S+KS  G        + ++DM  + G L+ A+++ ++  TP   D + W+ L+
Sbjct: 547 GKHLHCYSVKS--GFSGAASVLNSLVDMYSKCGSLEDAKKVFEEIATP---DVVSWNGLV 601

Query: 594 RSCRVHG 600
                +G
Sbjct: 602 SGLASNG 608


>gi|449441574|ref|XP_004138557.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Cucumis sativus]
          Length = 766

 Score =  298 bits (763), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 321/622 (51%), Gaps = 13/622 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N     + K   +++A +LFD+M  R+  ++ +LI+G  +          + EM S GI 
Sbjct: 109 NHVAHAYSKCSDIDAACRLFDQMSQRNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIF 168

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
                +S +L +C        G  +H +++  GF  + ++ + L+++Y ++     +  +
Sbjct: 169 PDQFAYSGILQICIGLDSIELGNMVHAQIVIRGFTSHTFVSTALLNMYAKLQEIEDSYKV 228

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+ + E N+ +WN M+  F       +   ++ +M  EGV P+  +F  + +  +IGML 
Sbjct: 229 FNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRMMGEGVTPDAQTFIGVAK--AIGMLR 286

Query: 228 D--EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD--FIPVDDVISWNS 283
           D  + K++  + ++LG VD N  V  AL+D  S CGSL EA+  F+  FI       WN+
Sbjct: 287 DVNKAKEVSGYALELG-VDSNTLVGTALIDMNSKCGSLQEARSIFNSHFITCRFNAPWNA 345

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++S Y        ALELF +M  C+    +   ++    N  +    +  GK++H    K
Sbjct: 346 MISGYLRSGFNEKALELFAKM--CQNDIYLDHYTYCSVFNAIAALKCLSLGKKVHARAIK 403

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G +   V + +A+ + Y KC  +E    VF     R L    SL+T+         A+E
Sbjct: 404 SGLEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDLISWTSLVTAYSQCSEWDKAIE 463

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M  EGI  ++ T S+ L  +S +    L   + +H    K G + +  +  +L+D 
Sbjct: 464 IFSNMRAEGIAPNQFTFSSVL--VSCANLCLLEYGQQVHGIICKVGLDMDKCIESALVDM 521

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG +  + +VF +I + + V +T+I+ G++++G+  +AL +   M+Q G+ P+ VTF
Sbjct: 522 YAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDDALQLFRRMVQLGVEPNAVTF 581

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           LCVL  C+H G+V+EG   F  MK  YG+  + +HY+C++D+L R G L+ A E + + P
Sbjct: 582 LCVLFACSHGGLVEEGLQYFKLMKKTYGLVPEMEHYACIVDLLSRVGHLNDAMEFISRMP 641

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              + M+W +LL +CRVHGN  +G   A  ++  +  + A Y  +SN Y E G ++  + 
Sbjct: 642 VEPNEMVWQTLLGACRVHGNVELGELAAQKILSFKAENSATYVLLSNTYIESGSYKDGLS 701

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R     + + ++ G S I VN
Sbjct: 702 LRHLMKEQGVKKEPGCSWISVN 723



 Score =  140 bits (354), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 111/460 (24%), Positives = 209/460 (45%), Gaps = 16/460 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           LN+Y+  + I+D         + K+F+ M   ++V++N +I+G         A  L+  M
Sbjct: 213 LNMYAKLQEIED---------SYKVFNTMTEVNVVSWNAMITGFTSNDLYLDAFDLFLRM 263

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +  G+   A TF  V           +  ++    L LG   N  +G+ L+D+  + G  
Sbjct: 264 MGEGVTPDAQTFIGVAKAIGMLRDVNKAKEVSGYALELGVDSNTLVGTALIDMNSKCGSL 323

Query: 162 VRALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
             A  +F+   +  R  A WN M+  +      ++ L ++ KM    +  +  ++C +  
Sbjct: 324 QEARSIFNSHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMCQNDIYLDHYTYCSVFN 383

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVN-IFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             +    L  GK++H+  IK G ++VN + ++NA+ + Y+ CGSL + +K F+ +   D+
Sbjct: 384 AIAALKCLSLGKKVHARAIKSG-LEVNYVSISNAVANAYAKCGSLEDVRKVFNRMEDRDL 442

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           ISW S+V+ Y+       A+E+F  M+     P+  +F   L   +    + +G+Q+HG 
Sbjct: 443 ISWTSLVTAYSQCSEWDKAIEIFSNMRAEGIAPNQFTFSSVLVSCANLCLLEYGQQVHGI 502

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + K+G D     ++SAL DMY KC  +  +  VF            +++      G + D
Sbjct: 503 ICKVGLDMDKC-IESALVDMYAKCGCLGDAKKVFNRISNADTVSWTAIIAGHAQHGIVDD 561

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+++F  MV  G+  + VT    L A S       G  +         G    +     +
Sbjct: 562 ALQLFRRMVQLGVEPNAVTFLCVLFACSHGGLVEEG-LQYFKLMKKTYGLVPEMEHYACI 620

Query: 459 MDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG 497
           +D  SR GH+  + +   ++P  PN + + +++     +G
Sbjct: 621 VDLLSRVGHLNDAMEFISRMPVEPNEMVWQTLLGACRVHG 660



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 141/315 (44%), Gaps = 12/315 (3%)

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA-NALVDFYSACGSLIEAKKSFDFIPV 275
           ++R C     L + K +H  ++K  + + +  V  N +   YS C  +  A + FD +  
Sbjct: 74  LLRDCVDARFLKQAKTVHGFLLKSKFSNHHSLVLLNHVAHAYSKCSDIDAACRLFDQMSQ 133

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +  SW  +++  A+  L  D  E F  MQ     P   ++   L       ++  G  +
Sbjct: 134 RNTFSWTVLIAGLAENGLFLDGFEFFCEMQSQGIFPDQFAYSGILQICIGLDSIELGNMV 193

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H  +   GF   +  V +AL +MY K   IE S  VF +    ++   N+++T    +  
Sbjct: 194 HAQIVIRGFTSHTF-VSTALLNMYAKLQEIEDSYKVFNTMTEVNVVSWNAMITGFTSNDL 252

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             DA ++F  M+ EG+  D  T     KA+ +    N    + +   A++ G +SN  V 
Sbjct: 253 YLDAFDLFLRMMGEGVTPDAQTFIGVAKAIGMLRDVN--KAKEVSGYALELGVDSNTLVG 310

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVC-----FTSIMNGYSRNGMGREALDMLEVMI 510
            +L+D  S+CG ++ +  +F    S  + C     + ++++GY R+G   +AL++   M 
Sbjct: 311 TALIDMNSKCGSLQEARSIFN---SHFITCRFNAPWNAMISGYLRSGFNEKALELFAKMC 367

Query: 511 QRGLIPDKVTFLCVL 525
           Q  +  D  T+  V 
Sbjct: 368 QNDIYLDHYTYCSVF 382


>gi|297808809|ref|XP_002872288.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297318125|gb|EFH48547.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 690

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 184/610 (30%), Positives = 328/610 (53%), Gaps = 9/610 (1%)

Query: 62  SAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-TFSSVLSV 119
           SA+ +F+ +  R D+  +N L+SG  K       L ++  +++  I    S T+ +V+  
Sbjct: 56  SARLVFENIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIKA 115

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
               G    G  IH  V+  G   ++ + S LV +Y +      ++ +FDE+PER++A+W
Sbjct: 116 YGALGREFLGRMIHTVVVKSGHVCDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASW 175

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++ +F +    ++ L ++ +M+    EPN +S    +  CS  + L+ GK++H   +K
Sbjct: 176 NTVISSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLK 235

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
             + +++ +V +ALVD Y  C  L  A++ F  +    +++WNS++  Y         +E
Sbjct: 236 KEF-ELDEYVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVE 294

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L  RM +   RPS  +    L   SR+ N+  GK +HGYV +   D   +++  +L D+Y
Sbjct: 295 LLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFVHGYVIRSVVD-ADIYINCSLIDLY 353

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  ++ +  VF       +E  N +++  +  GN   AV+++  MV  G+  D VT +
Sbjct: 354 FKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFT 413

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L   S  A+   G  + +H    +S  E++  +  +L+D YS+CG+++ + ++F  IP
Sbjct: 414 SVLSTCSQLAALEKG--KQIHLSISESRLETDELLLSALLDMYSKCGNVKEASRIFNSIP 471

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +VV +T +++ Y  +G  REAL   + M + G+ PD VTFL VL+ C H+G++ EG  
Sbjct: 472 KKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKPDGVTFLAVLSACGHAGLIDEGVK 531

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD-CMMWSSLLRSCRV 598
            F+ M+S YGI+A  + YSC+ID+LGRAG L +A  +LQQ P   D   + S+L  +C +
Sbjct: 532 YFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYGILQQKPETRDNAELLSTLFCACCL 591

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H + ++G  +A +L+E  P D + Y+ + N Y+    ++ + ++R       + +  G S
Sbjct: 592 HRDHLLGYTIAKLLVEKYPDDASTYTVLFNLYASGESWDAAKRVRLKMKEVGMRKKPGCS 651

Query: 659 LIEVNS--CH 666
            IE+N   CH
Sbjct: 652 WIEMNEKVCH 661



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 256/496 (51%), Gaps = 12/496 (2%)

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           +S   S+L  C+N     +   +H R+L++G   ++ +   L+++Y        A  +F+
Sbjct: 3   SSKLLSLLRECTNTKSLRQAKLVHQRILTVGLRSDVVLCKSLINVYFACKDHCSARLVFE 62

Query: 170 ELPER-NLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLL 227
            +  R ++  WN ++  + + S   + L+++ + +      P+  ++  +++  + G L 
Sbjct: 63  NIDIRSDVYIWNSLVSGYSKNSMFHDTLKVFKRLLNCPICVPDSFTYPNVIK--AYGALG 120

Query: 228 DE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            E  G+ +H+ V+K G V  ++ VA++LV  Y+      ++ + FD +P  DV SWN+++
Sbjct: 121 REFLGRMIHTVVVKSGHV-CDVVVASSLVGMYAKFNLFEDSVQVFDEMPERDVASWNTVI 179

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S +        ALELF RM+     P+  S    ++  SR   +  GK+IH    K  F+
Sbjct: 180 SSFYQRGDAEKALELFGRMERSDFEPNSVSITVAISACSRLLCLERGKEIHRKYLKKEFE 239

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
               +V SAL DMYG+C+ +E +  VF+    +SL   NS++   +  G+ K  VE+   
Sbjct: 240 LDE-YVNSALVDMYGRCDFLEMAREVFQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNR 298

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M+ EG    + TL++ L  ++ S S NL   + +H   I+S  +++I ++CSL+D Y +C
Sbjct: 299 MIIEGTRPSQTTLTSIL--MACSRSRNLLHGKFVHGYVIRSVVDADIYINCSLIDLYFKC 356

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++L+  VF K     V  +  +++GY   G   +A+D+ + M+  G+ PD VTF  VL
Sbjct: 357 GEVKLAETVFLKTQKDVVESWNVMISGYVSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVL 416

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+    +++G+ +  S+ S   ++ D    S ++DM  + G + +A  +    P   D
Sbjct: 417 STCSQLAALEKGKQIHLSI-SESRLETDELLLSALLDMYSKCGNVKEASRIFNSIP-KKD 474

Query: 586 CMMWSSLLRSCRVHGN 601
            + W+ ++ +   HG 
Sbjct: 475 VVSWTVMISAYGSHGQ 490



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 112/426 (26%), Positives = 204/426 (47%), Gaps = 3/426 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K      + ++FDEMP RD+ ++N +IS   +    ++AL L+  M     + ++ + 
Sbjct: 151 YAKFNLFEDSVQVFDEMPERDVASWNTVISSFYQRGDAEKALELFGRMERSDFEPNSVSI 210

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +  +S CS       G +IH + L   F L+ Y+ S LVD+Y R      A ++F ++  
Sbjct: 211 TVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREVFQQMRR 270

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++L  WN M+R +         + + N+M  EG  P+  +   ++  CS    L  GK +
Sbjct: 271 KSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKFV 330

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H +VI+   VD +I++  +L+D Y  CG +  A+  F     D V SWN ++S Y     
Sbjct: 331 HGYVIR-SVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGYVSVGN 389

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
            F A++++ +M     +P I +F   L+  S+   +  GKQIH  +++   +   + + S
Sbjct: 390 WFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLSISESRLETDEL-LLS 448

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL DMY KC  ++ +  +F S P + +     ++++    G  ++A+  F  M   G+  
Sbjct: 449 ALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQKFGVKP 508

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D VT    L A   +   + G  +       K G E++I     L+D   R G +  ++ 
Sbjct: 509 DGVTFLAVLSACGHAGLIDEG-VKYFSQMRSKYGIEASIEQYSCLIDILGRAGRLLEAYG 567

Query: 474 VFEKIP 479
           + ++ P
Sbjct: 568 ILQQKP 573



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 181/371 (48%), Gaps = 4/371 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   +IT     C+ ++ L     +   Y +   +L+ Y ++  +D + +   L  A+++
Sbjct: 205 PNSVSITVAISACSRLLCLERGKEIHRKYLKKEFELDEYVNSALVDMYGRCDFLEMAREV 264

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F +M  + +V +N +I G       K  + L + M+  G + S +T +S+L  CS +   
Sbjct: 265 FQQMRRKSLVAWNSMIRGYVARGDSKSCVELLNRMIIEGTRPSQTTLTSILMACSRSRNL 324

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  +H  V+      ++YI   L+DLY + G    A  +F +  +  + +WN+M+  +
Sbjct: 325 LHGKFVHGYVIRSVVDADIYINCSLIDLYFKCGEVKLAETVFLKTQKDVVESWNVMISGY 384

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
             +    + + +Y++M + GV+P+ ++F  ++  CS    L++GKQ+H   I    ++ +
Sbjct: 385 VSVGNWFKAVDVYDQMVSVGVQPDIVTFTSVLSTCSQLAALEKGKQIHLS-ISESRLETD 443

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             + +AL+D YS CG++ EA + F+ IP  DV+SW  ++S Y  +    +AL  F  MQ 
Sbjct: 444 ELLLSALLDMYSKCGNVKEASRIFNSIPKKDVVSWTVMISAYGSHGQPREALYHFDEMQK 503

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFG-KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
              +P   +F+  L+     G +  G K      +K G +  S+   S L D+ G+   +
Sbjct: 504 FGVKPDGVTFLAVLSACGHAGLIDEGVKYFSQMRSKYGIE-ASIEQYSCLIDILGRAGRL 562

Query: 366 ESSVAVFESAP 376
             +  + +  P
Sbjct: 563 LEAYGILQQKP 573


>gi|302767396|ref|XP_002967118.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
 gi|300165109|gb|EFJ31717.1| hypothetical protein SELMODRAFT_87370 [Selaginella moellendorffii]
          Length = 903

 Score =  298 bits (762), Expect = 7e-78,   Method: Compositional matrix adjust.
 Identities = 187/615 (30%), Positives = 320/615 (52%), Gaps = 20/615 (3%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G + SA  LF+ M  RD+V++N  I+   +      AL L+  M   G++ +  T    L
Sbjct: 177 GCVASAMLLFERME-RDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITL 235

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           SVC+      +   IH  V   G    L + + L   Y R+G   +A ++FD   ER++ 
Sbjct: 236 SVCAK---IRQARAIHSIVRESGLEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVV 292

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN ML A+ +     E   ++ +M  EG+ P+ ++      GCS    L  G+ +H+  
Sbjct: 293 SWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSKVTLVNASTGCSS---LRFGRMIHACA 349

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           ++ G +D +I + NAL+D Y+ CGS  EA+  F+ IP  + +SWN++++  +    +  A
Sbjct: 350 LEKG-LDRDIVLGNALLDMYTRCGSPEEARHLFEGIP-GNAVSWNTMIAGSSQKGQMKRA 407

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFAS----RTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
           LELF RMQL    P   +++  L   +        +  G+++H  +   G+      + +
Sbjct: 408 LELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPA-IGT 466

Query: 354 ALTDMYGKCNVIESSVAVFESAP---GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           A+  MY  C  I+ + A F+         +   N++++SL   G+ K A+  F  M   G
Sbjct: 467 AVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHG 526

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  +++T    L A + +A+   G   ++H     SG ESN+ V+ +L   Y RCG +E 
Sbjct: 527 VAPNQITCVAVLDACAGAAALTEGV--IVHDHLRHSGMESNVFVATALASMYGRCGSLES 584

Query: 471 SHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           + ++FEK+    +VV F +++  YS+NG+  EAL +   M Q G  PD+ +F+ VL+ C+
Sbjct: 585 AREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACS 644

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H G+  EG  +F SM+  YGI     HY+C +D+LGRAG L  AEEL++        ++W
Sbjct: 645 HGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVW 704

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +CR + +   GR   +++ EL+P D + Y  +SN  +  G+++ + ++R    +R
Sbjct: 705 KTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESR 764

Query: 650 KLTRDIGHSLIEVNS 664
            L +  G S IE+ S
Sbjct: 765 GLRKQAGKSWIEIKS 779



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 141/551 (25%), Positives = 278/551 (50%), Gaps = 16/551 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  ++K   L   +++F  +  RD  ++  +I+   +    K+A++++  M   G++
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIWMFHRMQQEGVR 125

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             A TF +VL  C+  G  ++G  IH  ++  G      + + L+ +Y   G    A+ L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLEGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+ + ER+L +WN  + A  +    D  L ++ +M+ EGV P  ++    +  C+    +
Sbjct: 186 FERM-ERDLVSWNAAIAANAQSGDLDMALELFQRMQLEGVRPARITLVITLSVCA---KI 241

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            + + +HS V + G ++  + V+ AL   Y+  G L +AK+ FD     DV+SWN+++  
Sbjct: 242 RQARAIHSIVRESG-LEQTLVVSTALASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGA 300

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           YA +  + +A  LF RM L    P   S V  +N ++   ++ FG+ IH    + G D  
Sbjct: 301 YAQHGHMSEAALLFARM-LHEGIPP--SKVTLVNASTGCSSLRFGRMIHACALEKGLDRD 357

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            V + +AL DMY +C   E +  +FE  PG ++   N+++      G +K A+E+F  M 
Sbjct: 358 IV-LGNALLDMYTRCGSPEEARHLFEGIPGNAVS-WNTMIAGSSQKGQMKRALELFQRMQ 415

Query: 408 DEGIGLDEVTLSTTLKALSVS--ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
            EG+     T    L+A++ +   +  +   R LH   +  G+ S  A+  +++  Y+ C
Sbjct: 416 LEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASC 475

Query: 466 GHIELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           G I+ +   F++       +VV + +I++  S++G G+ AL     M   G+ P+++T +
Sbjct: 476 GAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCV 535

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  C  +  + EG +V + ++   G++++    + +  M GR G L+ A E+ ++   
Sbjct: 536 AVLDACAGAAALTEGVIVHDHLRH-SGMESNVFVATALASMYGRCGSLESAREIFEKVAV 594

Query: 583 GGDCMMWSSLL 593
             D +++++++
Sbjct: 595 ERDVVIFNAMI 605



 Score =  186 bits (472), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 255/492 (51%), Gaps = 21/492 (4%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +L    +    ++G +IH R++SLG  L   +G+ L+ LY++        ++F  L  R+
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLG--LEEELGNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
            A+W  ++ A+ E  +    + M+++M+ EGV  + ++F  +++ C+    L +G+ +H+
Sbjct: 93  EASWTTIITAYTEHGQAKRAIWMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            +++ G ++    +AN L+  Y +CG +  A   F+ +   D++SWN+ ++  A    + 
Sbjct: 153 WIVESG-LEGKSVLANLLLHIYGSCGCVASAMLLFERME-RDLVSWNAAIAANAQSGDLD 210

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
            ALELF RMQL   RP+  + V  L+  ++   +   + IH  V + G +   V V +AL
Sbjct: 211 MALELFQRMQLEGVRPARITLVITLSVCAK---IRQARAIHSIVRESGLEQTLV-VSTAL 266

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
              Y +   ++ +  VF+ A  R +   N+++ +    G++ +A  +F  M+ EGI   +
Sbjct: 267 ASAYARLGHLDQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGIPPSK 326

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VTL   + A +  +S   G  R++H CA++ G + +I +  +L+D Y+RCG  E +  +F
Sbjct: 327 VTL---VNASTGCSSLRFG--RMIHACALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF 381

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC----NHS 531
           E IP  N V + +++ G S+ G  + AL++ + M   G+ P + T+L +L         +
Sbjct: 382 EGIPG-NAVSWNTMIAGSSQKGQMKRALELFQRMQLEGMAPVRATYLNLLEAVASNPEEA 440

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ--TPGGGDCMMW 589
             + EG+ + + + S  G  ++    + ++ M    G +D+A    Q+       D + W
Sbjct: 441 RAMAEGRKLHSRIVSC-GYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSW 499

Query: 590 SSLLRSCRVHGN 601
           ++++ S   HG+
Sbjct: 500 NAIISSLSQHGH 511


>gi|297804022|ref|XP_002869895.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315731|gb|EFH46154.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 853

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 186/665 (27%), Positives = 341/665 (51%), Gaps = 6/665 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSS-SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P V T   L   C ++        L D+        N + ++  I  +++ G 
Sbjct: 125 MLCFGVSPDVSTFPCLVKACVALKNFKGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 184

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A KLFD +  +D V +N++++G  K       +  +  M    I  +A TF  VLSV
Sbjct: 185 IDVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSV 244

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G+Q+H  V+  G      I + L+ +Y + G    A+ LF  +   +  TW
Sbjct: 245 CASKLLIDLGVQLHGLVVVSGLDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTW 304

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + +    +E L  + +M + GV P+ ++F  ++   S    L+  +Q+H ++++
Sbjct: 305 NCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMR 364

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              + ++IF+ +AL+D Y  C  +  A+K F      DV+ + +++S Y    L  DALE
Sbjct: 365 HS-ISLDIFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALE 423

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  +   +  P+  + V  L        +  G+++HG++ K GFD+   ++  A+ DMY
Sbjct: 424 MFRWLVKVKISPNEITLVSILPVIGGLLALKLGRELHGFIIKKGFDN-RCNIGCAVIDMY 482

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  +  +  +F     R +   NS++T    S N   A+++F  M   GI  D V++S
Sbjct: 483 AKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCVSIS 542

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A +   S + G  + +H   IK     ++    +L+D Y++CG+++ +  VF+ + 
Sbjct: 543 AALSACANLPSESFG--KAIHGFMIKHSLALDVYSESTLIDMYAKCGNLKAAMNVFDTMK 600

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR-GLIPDKVTFLCVLAGCNHSGMVKEGQ 538
             N+V + SI+  Y  +G  +++L +   M+++ G  PD++TFL +++ C H G V EG 
Sbjct: 601 EKNIVSWNSIIAAYGNHGKLKDSLCLFHEMVEKSGNRPDQITFLEIISLCCHVGDVDEGV 660

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F SM   YGI   ++HY+C++D+ GRAG L +A E ++  P   D  +W +LL + R+
Sbjct: 661 RFFRSMTQDYGIQPQQEHYACVVDLFGRAGRLSEAYETVKSMPFPPDAGVWGTLLGASRL 720

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H N  + +  ++ LM+L+P +   Y  +SN ++  GE+E   ++R     R++ +  G+S
Sbjct: 721 HKNVELAKVASSRLMDLDPWNSGYYVLISNAHANTGEWESVTKVRSLMKEREVQKIPGYS 780

Query: 659 LIEVN 663
            IE+N
Sbjct: 781 WIEIN 785



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 145/562 (25%), Positives = 275/562 (48%), Gaps = 14/562 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPAR--DMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           Y+  R +  +   G  ++  K+F  + +R   +  +N +IS   +     QAL  Y +M+
Sbjct: 67  YTDERILGMYAMCGSFSNCGKMFYRLDSRLSSIRPWNSIISSFVRMGLLNQALAFYFKML 126

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             G+    STF  ++  C     + +GI+ +   V SLG   N ++ S L+  Y+  G  
Sbjct: 127 CFGVSPDVSTFPCLVKACVALKNF-KGIEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKI 185

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LFD + +++   WN+ML  + +    D V++ ++ M+ + + PN ++F  ++  C
Sbjct: 186 DVAGKLFDRVLQKDCVIWNVMLNGYAKCGASDSVIKGFSLMRMDQISPNAVTFDCVLSVC 245

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +  +L+D G QLH  V+  G +D    + N+L+  YS CG   +A K F  +   D ++W
Sbjct: 246 ASKLLIDLGVQLHGLVVVSG-LDFEGSIKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTW 304

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N ++S Y    L+ ++L  F+ M      P   +F   L   S+  N+ + +QIH Y+ +
Sbjct: 305 NCMISGYVQSGLMEESLIFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCRQIHCYIMR 364

Query: 342 --LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             +  D   + + SAL D Y KC  +  +  +F       +    ++++  LH+G   DA
Sbjct: 365 HSISLD---IFLTSALIDAYFKCRGVSMAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDA 421

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +EMF ++V   I  +E+TL + L  +    +  LG  R LH   IK GF++   + C+++
Sbjct: 422 LEMFRWLVKVKISPNEITLVSILPVIGGLLALKLG--RELHGFIIKKGFDNRCNIGCAVI 479

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG + L++++F ++   ++V + S++   +++     A+D+   M   G+  D V
Sbjct: 480 DMYAKCGRMNLAYEIFGRLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICFDCV 539

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +    L+ C +      G+ +   M   + +  D    S +IDM  + G L  A  +   
Sbjct: 540 SISAALSACANLPSESFGKAIHGFMIK-HSLALDVYSESTLIDMYAKCGNLKAAMNVF-D 597

Query: 580 TPGGGDCMMWSSLLRSCRVHGN 601
           T    + + W+S++ +   HG 
Sbjct: 598 TMKEKNIVSWNSIIAAYGNHGK 619



 Score =  163 bits (413), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 125/493 (25%), Positives = 241/493 (48%), Gaps = 12/493 (2%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            S +L  CSN     +G Q+H  V+      + Y    ++ +Y   G       +F  L 
Sbjct: 34  LSLLLQDCSNLTLLRQGKQVHAFVIVNRISGDSYTDERILGMYAMCGSFSNCGKMFYRLD 93

Query: 173 ER--NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            R  ++  WN ++ +F  +   ++ L  Y KM   GV P+  +F  +V+ C + +   +G
Sbjct: 94  SRLSSIRPWNSIISSFVRMGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC-VALKNFKG 152

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
            +  S  +    +D N FVA++L+  Y   G +  A K FD +   D + WN +++ YA 
Sbjct: 153 IEFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVAGKLFDRVLQKDCVIWNVMLNGYAK 212

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD-HGSV 349
                  ++ F  M++ +  P+  +F   L+  +    +  G Q+HG V   G D  GS 
Sbjct: 213 CGASDSVIKGFSLMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGLDFEGS- 271

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            ++++L  MY KC   + ++ +F           N +++  + SG +++++  F  M+  
Sbjct: 272 -IKNSLLSMYSKCGRFDDAIKLFRMMSRADTVTWNCMISGYVQSGLMEESLIFFYEMISS 330

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+  D +T S+ L   SVS   NL  CR +HC  ++     +I ++ +L+DAY +C  + 
Sbjct: 331 GVLPDAITFSSLLP--SVSKFENLEYCRQIHCYIMRHSISLDIFLTSALIDAYFKCRGVS 388

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           ++ ++F +  S +VV FT++++GY  NG+  +AL+M   +++  + P+++T + +L    
Sbjct: 389 MAQKIFSQCNSVDVVVFTAMISGYLHNGLNIDALEMFRWLVKVKISPNEITLVSILPVIG 448

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQQTPGGGDCMM 588
               +K G+ +   +    G D +R +  C +IDM  + G ++ A E+  +     D + 
Sbjct: 449 GLLALKLGRELHGFIIK-KGFD-NRCNIGCAVIDMYAKCGRMNLAYEIFGRL-SKRDIVS 505

Query: 589 WSSLLRSCRVHGN 601
           W+S++  C    N
Sbjct: 506 WNSMITRCAQSDN 518


>gi|357136755|ref|XP_003569969.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Brachypodium distachyon]
          Length = 805

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 191/671 (28%), Positives = 327/671 (48%), Gaps = 50/671 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   L+P   T+ ++   C ++  L           +     N++  N  +  + K G 
Sbjct: 131 MLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCGG 190

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A +LFD M + + V++  ++ G  +      AL L+  M   G++      SSVL  
Sbjct: 191 VEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLGS 250

Query: 120 CSNA--------GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           C+ A          +  G  IH  ++  GFG + ++G+ L+D+Y +      A+ +FD L
Sbjct: 251 CAQACASEFDVVRAFRLGQCIHALIVRKGFGSDQHVGNSLIDMYTKCMQMDEAVKVFDSL 310

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           P  +  +WN+++  F +     + L + N M+  G EPN +++  M+  C          
Sbjct: 311 PNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASC---------- 360

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
                 IK                       ++ A+  FD I    V +WN+++S Y   
Sbjct: 361 ------IK--------------------ARDVLSARAMFDKISRPSVTTWNTLLSGYCQE 394

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           +L  D +ELF RMQ    +P   +    L+  SR G +  G Q+H    +    H  + V
Sbjct: 395 ELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGTQVHSASVRF-LLHNDMFV 453

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL-LHSGNIKDAVEMFGFMVDEG 410
            S L DMY KC  I  +  +F     R + C NS+++ L +HS N ++A + F  M   G
Sbjct: 454 ASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLN-EEAFDFFKQMRGNG 512

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +   E + ++ + + +  +S   G  R +H   +K G++ N+ V  +L+D Y++CG+++ 
Sbjct: 513 MMPTESSYASMINSCARLSSVPQG--RQIHAQIVKDGYDQNVYVGSALIDMYAKCGNMDD 570

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +   F+ + + N+V +  +++GY++NG G +A+D+ E M+     PD VTF+ VL GC+H
Sbjct: 571 ARVFFDCMVTKNIVAWNEMIHGYAQNGFGEKAVDLFEYMLTTEQRPDGVTFIAVLTGCSH 630

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG+V E    FNSM+S YGI    +HY+C+ID LGRAG L + E L+   P   D ++W 
Sbjct: 631 SGLVDEAIAFFNSMESTYGITPLAEHYTCLIDGLGRAGRLVEVEALIDNMPCKDDPIVWE 690

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
            LL +C VH N  +G   A  L  L+P + + Y  +SN Y+ +G    +  +R    +R 
Sbjct: 691 VLLAACAVHHNAELGECAAKHLFRLDPKNPSPYVLLSNIYASLGRHGDASGVRALMSSRG 750

Query: 651 LTRDIGHSLIE 661
           + +  G+S I+
Sbjct: 751 VVKGRGYSWID 761



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 133/573 (23%), Positives = 263/573 (45%), Gaps = 60/573 (10%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N YS N  +    ++G L++A+ L DEMP R++V++N +I+   +     +AL LY+
Sbjct: 70  PRPNAYSYNAALSAARRAGDLDAARALLDEMPDRNVVSWNTVIAALARSERAGEALELYE 129

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M+  G+  +  T +SVLS C       +G + H   + +G   NL++ + L+ +Y + G
Sbjct: 130 GMLREGLVPTHFTLASVLSACGAVAALDDGRRCHGLAVKVGLDENLFVENALLGMYTKCG 189

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A+ LFD +   N  ++  M+    +    D+ LR++ +M   GV  + ++   ++ 
Sbjct: 190 GVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRVDPVAVSSVLG 249

Query: 220 GCS--------IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            C+        +      G+ +H+ +++ G+   +  V N+L+D Y+ C  + EA K FD
Sbjct: 250 SCAQACASEFDVVRAFRLGQCIHALIVRKGF-GSDQHVGNSLIDMYTKCMQMDEAVKVFD 308

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P    +SWN +++ +        ALE+   M+     P+  ++   L    +  +V  
Sbjct: 309 SLPNISTVSWNILITGFGQAGSYAKALEVLNLMEESGSEPNEVTYSNMLASCIKARDVL- 367

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
                                              S+ A+F+     S+   N+L++   
Sbjct: 368 -----------------------------------SARAMFDKISRPSVTTWNTLLSGYC 392

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
                +D VE+F  M  + +  D  TL+  L + S     +LG+   +H  +++    ++
Sbjct: 393 QEELHQDTVELFRRMQHQNVQPDRTTLAVILSSCSRLGILDLGT--QVHSASVRFLLHND 450

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + V+  L+D YS+CG I ++  +F ++   +VVC+ S+++G + + +  EA D  + M  
Sbjct: 451 MFVASGLVDMYSKCGQIGIARIIFNRMTERDVVCWNSMISGLAIHSLNEEAFDFFKQMRG 510

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G++P + ++  ++  C     V +G+ +   +    G D +    S +IDM  + G +D
Sbjct: 511 NGMMPTESSYASMINSCARLSSVPQGRQIHAQIVK-DGYDQNVYVGSALIDMYAKCGNMD 569

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
            A           DCM+  ++     V  NE+I
Sbjct: 570 DARVFF-------DCMVTKNI-----VAWNEMI 590



 Score = 85.5 bits (210), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 74/313 (23%), Positives = 139/313 (44%), Gaps = 51/313 (16%)

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D    N +V +Y+   L  DAL  F  +     RP+  S+   L+ A R G+        
Sbjct: 42  DTFLINRLVELYSVSGLPCDALRAFRSL----PRPNAYSYNAALSAARRAGD-------- 89

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
                                       ++++ A+ +  P R++   N+++ +L  S   
Sbjct: 90  ----------------------------LDAARALLDEMPDRNVVSWNTVIAALARSERA 121

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            +A+E++  M+ EG+     TL++ L A    A+ + G  R  H  A+K G + N+ V  
Sbjct: 122 GEALELYEGMLREGLVPTHFTLASVLSACGAVAALDDG--RRCHGLAVKVGLDENLFVEN 179

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+  Y++CG +E + ++F+ + SPN V FT++M G  + G   +AL +   M + G+  
Sbjct: 180 ALLGMYTKCGGVEDAVRLFDGMASPNEVSFTAMMGGLVQAGSVDDALRLFARMCRSGVRV 239

Query: 517 DKVTFLCVLAGCNHS--------GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           D V    VL  C  +           + GQ + +++    G  +D+   + +IDM  +  
Sbjct: 240 DPVAVSSVLGSCAQACASEFDVVRAFRLGQCI-HALIVRKGFGSDQHVGNSLIDMYTKCM 298

Query: 569 ILDKAEELLQQTP 581
            +D+A ++    P
Sbjct: 299 QMDEAVKVFDSLP 311


>gi|297736478|emb|CBI25349.3| unnamed protein product [Vitis vinifera]
          Length = 1241

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 181/603 (30%), Positives = 319/603 (52%), Gaps = 5/603 (0%)

Query: 63   AKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            A  LF ++  R ++V +N++I G  +    +++L LY    +   K  +++F+   + CS
Sbjct: 601  AWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS 660

Query: 122  NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
            +      G Q+HC V+ + F  + Y+ + L+ +Y + G    A  +FD++ ++ +   N 
Sbjct: 661  HGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNA 720

Query: 182  MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
            M+ AF    R  + L +YNKMKA     +  +   ++ GCS+    D G+ +H+ VIK  
Sbjct: 721  MISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRS 780

Query: 242  WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
             +  N+ + +AL+  Y  CGS  +A   F  +   DV++W S+++ +       DAL+LF
Sbjct: 781  -MQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLF 839

Query: 302  FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
              M+    +         ++      NV  G  IHG+  K G +   V V  +L DMY K
Sbjct: 840  RAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLE-SDVFVACSLVDMYSK 898

Query: 362  CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
                ES+  VF S P ++L   NS+++    +G  + ++ +   ++  G  LD V+++T 
Sbjct: 899  FGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTV 958

Query: 422  LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
            L  ++VS+ A L   + LH   I+    S++ V  +L+D Y +CG ++ +  +FE +P  
Sbjct: 959  L--VAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRR 1016

Query: 482  NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
            N+V + S++ GY  +G   EA+ + + M +    PD+VTFL ++  C+HSGMV+EG  +F
Sbjct: 1017 NLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLF 1076

Query: 542  NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
              M+  YG++   +HY+ ++D+LGRAG LD A   ++  P   D  +W  LL +CR H N
Sbjct: 1077 QLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRN 1136

Query: 602  EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
              +G  VA+ L+++EP   + Y  + N Y E+  ++ +  +R +   R L +  G S IE
Sbjct: 1137 MELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIE 1196

Query: 662  VNS 664
            V +
Sbjct: 1197 VKN 1199



 Score =  244 bits (623), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 173/597 (28%), Positives = 298/597 (49%), Gaps = 13/597 (2%)

Query: 12   TITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
            T  +L  TC S+  L     +  S      Q + Y +   I+ +VK G L SA ++FD+M
Sbjct: 443  TFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKM 502

Query: 71   P-----ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
                  A D+  +N +I G  K+ H ++ L  +  M   GI+    + S VL +C+   +
Sbjct: 503  SESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQELGIRPDGYSLSIVLGICNRLSW 562

Query: 126  YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLR 184
            Y  G QIH  ++   F  + Y+ + L+ +Y      + A  LF +L  R N+  WN+M+ 
Sbjct: 563  YMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIG 622

Query: 185  AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
             F E    ++ L +Y+  K E  +    SF      CS G +LD G+Q+H  VIK+ + D
Sbjct: 623  GFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQD 682

Query: 245  VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
             + +V  +L+  Y+  GS+ +AKK FD +   +V   N+++S +      +DAL L+ +M
Sbjct: 683  -DPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM 741

Query: 305  QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
            +         +    L+  S  G+  FG+ +H  V K      +V +QSAL  MY KC  
Sbjct: 742  KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSM-QSNVAIQSALLTMYYKCGS 800

Query: 365  IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
             E + +VF +   R +    S++     +   KDA+++F  M  EG+  D   +++ + A
Sbjct: 801  TEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISA 860

Query: 425  LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
                 +  LG   L+H  AIK G ES++ V+CSL+D YS+ G  E +  VF  +P+ N+V
Sbjct: 861  GLGLENVELG--HLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLV 918

Query: 485  CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
             + S+++ YS NG+   ++++L  ++Q G   D V+   VL   +    + +G+   ++ 
Sbjct: 919  AWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGK-TLHAY 977

Query: 545  KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            +    I +D Q  + +IDM  + G L  A+ + +  P   + + W+S++     HGN
Sbjct: 978  QIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMP-RRNLVTWNSMIAGYGSHGN 1033



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 125/517 (24%), Positives = 252/517 (48%), Gaps = 16/517 (3%)

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
           GK+    QAL L+ +     +  +  TF S+L  C++      G  IH  ++++G   + 
Sbjct: 420 GKY---SQALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDP 476

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPER-----NLATWNLMLRAFCELSRPDEVLRMYN 200
           YI + L+++Y++ G    AL +FD++ E      ++  WN ++  + +    +E L  + 
Sbjct: 477 YIATSLINMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFC 536

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M+  G+ P+G S   ++  C+       G+Q+H ++I+    + + ++  AL+  YS+C
Sbjct: 537 RMQELGIRPDGYSLSIVLGICNRLSWYMAGRQIHGYIIR-NMFEGDPYLETALIGMYSSC 595

Query: 261 GSLIEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319
              +EA   F  +    ++++WN ++  + +  +   +LEL+   +    +    SF   
Sbjct: 596 SRPMEAWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGA 655

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
               S    + FG+Q+H  V K+ F     +V ++L  MY K   +E +  VF+    + 
Sbjct: 656 FTACSHGEVLDFGRQVHCDVIKMNF-QDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKE 714

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +E  N+++++ + +G   DA+ ++  M      +D  T+S+ L   SV  S + G  R +
Sbjct: 715 VELRNAMISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG--RTV 772

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H   IK   +SN+A+  +L+  Y +CG  E +  VF  +   +VV + S++ G+ +N   
Sbjct: 773 HAEVIKRSMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRF 832

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
           ++ALD+   M + G+  D      V++       V+ G L+ +      G+++D      
Sbjct: 833 KDALDLFRAMEKEGVKADSDVMTSVISAGLGLENVELGHLI-HGFAIKRGLESDVFVACS 891

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           ++DM  + G  + AE +    P   + + W+S++ SC
Sbjct: 892 LVDMYSKFGFAESAEMVFSSMP-NKNLVAWNSMI-SC 926



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 17/208 (8%)

Query: 2    LSTKLLPRVR---------TITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRT 50
            +S  LLP++          +ITT+    +S+  L     L +Y Q   Q+  ++   N  
Sbjct: 935  MSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAY-QIRLQIPSDLQVENAL 993

Query: 51   IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
            ID +VK G L  A+ +F+ MP R++VT+N +I+G G   + ++A+ L+ EM         
Sbjct: 994  IDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDE 1053

Query: 111  STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLF 168
             TF ++++ CS++G   EG+ +  +++ + +G+   +   + +VDL  R G    A    
Sbjct: 1054 VTFLALITSCSHSGMVEEGLNLF-QLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFI 1112

Query: 169  DELP-ERNLATWNLMLRAFCELSRPDEV 195
              +P + + + W  +L A C   R  E+
Sbjct: 1113 RGMPIDADRSVWLCLLFA-CRAHRNMEL 1139


>gi|242092564|ref|XP_002436772.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
 gi|241914995|gb|EER88139.1| hypothetical protein SORBIDRAFT_10g008520 [Sorghum bicolor]
          Length = 825

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 188/625 (30%), Positives = 322/625 (51%), Gaps = 8/625 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           QL+ + +N  ++ + K G L +A++LFD MP R+MV++  L+ G       ++A  L+  
Sbjct: 81  QLDTFCANVLLNLYAKLGPLAAARRLFDGMPERNMVSFVTLVQGYALRGGFEEAAGLFRR 140

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +   G + +    +++L V            IH     LG   N ++GS L+D Y   G 
Sbjct: 141 LQREGHEVNHFVLTTILKVLVAMDAPGLTCCIHACACKLGHDRNAFVGSSLIDAYSLCGA 200

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +  ++  TW  M+  + E   P++ L  ++KM+  G +PN      +++ 
Sbjct: 201 VSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDALNTFSKMRMAGAKPNPFVLTSVLKA 260

Query: 221 --CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C    +L  GK +H   +K    D    V  AL+D Y+ CG + +A+  F+ IP DDV
Sbjct: 261 AVCLSSAVL--GKGIHGCAVKT-LCDTEPHVGGALLDMYAKCGYIEDARTVFEIIPHDDV 317

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           I W+ ++S YA       A E+F RM      P+  S    L   +    +  G+QIH  
Sbjct: 318 ILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFSLSGVLQACANVAFLDLGQQIHNL 377

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V KLG++   + V +AL D+Y KC  +E+S+ +F S    +    N+++     SG  +D
Sbjct: 378 VIKLGYE-SELFVGNALMDVYAKCRNMENSLEIFRSLRDANEVSWNTIIVGYCQSGFAED 436

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M    +   +VT S+ L+A + +AS  +     +H    KS F ++  V  SL
Sbjct: 437 ALSVFQEMRAAHVLSTQVTFSSVLRACANTAS--IKHTVQIHSLIEKSTFNNDTIVCNSL 494

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++CG I  + +VFE I   +VV + +I++GY+ +G   +AL++   M +    P+ 
Sbjct: 495 IDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALHGRATDALELFNRMNKSDTKPND 554

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ +L+ C  +G+V +G  +FNSM   + I     HY+C++ +LGRAG L+ A + + 
Sbjct: 555 VTFVALLSVCGSTGLVNQGLSLFNSMTMDHRIKPSMDHYTCIVRLLGRAGRLNDALKFIG 614

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P     M+W +LL SC VH N  +G+  A  ++E+EP D   Y  +SN Y+  G  + 
Sbjct: 615 DIPSTPSPMVWRALLSSCVVHKNVALGKFSAEKVLEIEPQDETTYVLLSNMYAAAGILDQ 674

Query: 639 SMQIRETALARKLTRDIGHSLIEVN 663
              +R++     + +++G S +E+ 
Sbjct: 675 VALLRKSMRNIGVKKEVGLSWVEIK 699



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 132/539 (24%), Positives = 248/539 (46%), Gaps = 43/539 (7%)

Query: 36  CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL 95
           C+     N +  +  ID +   G ++ A+ +FD +  +D VT+  ++S   +   P+ AL
Sbjct: 177 CKLGHDRNAFVGSSLIDAYSLCGAVSHARCVFDGIIWKDAVTWTAMVSCYSENDIPEDAL 236

Query: 96  YLYDEMVSHGIKESASTFSSVL--SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
             + +M   G K +    +SVL  +VC ++    +GI   C V +L      ++G  L+D
Sbjct: 237 NTFSKMRMAGAKPNPFVLTSVLKAAVCLSSAVLGKGIH-GCAVKTL-CDTEPHVGGALLD 294

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A  +F+ +P  ++  W+ ++  + +  + ++   M+ +M    V PN  S
Sbjct: 295 MYAKCGYIEDARTVFEIIPHDDVILWSFLISRYAQSYQNEQAFEMFLRMMRSSVVPNEFS 354

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              +++ C+    LD G+Q+H+ VIKLG+ +  +FV NAL+D Y+ C ++  + + F  +
Sbjct: 355 LSGVLQACANVAFLDLGQQIHNLVIKLGY-ESELFVGNALMDVYAKCRNMENSLEIFRSL 413

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              + +SWN+I+  Y       DAL +F  M+      +  +F   L   + T ++    
Sbjct: 414 RDANEVSWNTIIVGYCQSGFAEDALSVFQEMRAAHVLSTQVTFSSVLRACANTASIKHTV 473

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           QIH  + K  F++ ++ V ++L D Y KC  I  ++ VFES     +   N++++     
Sbjct: 474 QIHSLIEKSTFNNDTI-VCNSLIDTYAKCGCIRDALKVFESIIQCDVVSWNAIISGYALH 532

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G   DA+E+F  M       ++VT    +  LSV  S  L          +  G      
Sbjct: 533 GRATDALELFNRMNKSDTKPNDVTF---VALLSVCGSTGL----------VNQGL----- 574

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
              SL ++ +      + H++      P++  +T I+    R G   +AL  +  +    
Sbjct: 575 ---SLFNSMT------MDHRI-----KPSMDHYTCIVRLLGRAGRLNDALKFIGDIPS-- 618

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
             P  + +  +L+ C     V  G+  F++ K +     D   Y  + +M   AGILD+
Sbjct: 619 -TPSPMVWRALLSSCVVHKNVALGK--FSAEKVLEIEPQDETTYVLLSNMYAAAGILDQ 674


>gi|359486457|ref|XP_002275344.2| PREDICTED: pentatricopeptide repeat-containing protein At2g40720
           [Vitis vinifera]
          Length = 836

 Score =  298 bits (762), Expect = 8e-78,   Method: Compositional matrix adjust.
 Identities = 181/603 (30%), Positives = 319/603 (52%), Gaps = 5/603 (0%)

Query: 63  AKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           A  LF ++  R ++V +N++I G  +    +++L LY    +   K  +++F+   + CS
Sbjct: 196 AWSLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACS 255

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
           +      G Q+HC V+ + F  + Y+ + L+ +Y + G    A  +FD++ ++ +   N 
Sbjct: 256 HGEVLDFGRQVHCDVIKMNFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNA 315

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+ AF    R  + L +YNKMKA     +  +   ++ GCS+    D G+ +H+ VIK  
Sbjct: 316 MISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRS 375

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  N+ + +AL+  Y  CGS  +A   F  +   DV++W S+++ +       DAL+LF
Sbjct: 376 -MQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLF 434

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             M+    +         ++      NV  G  IHG+  K G +   V V  +L DMY K
Sbjct: 435 RAMEKEGVKADSDVMTSVISAGLGLENVELGHLIHGFAIKRGLE-SDVFVACSLVDMYSK 493

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
               ES+  VF S P ++L   NS+++    +G  + ++ +   ++  G  LD V+++T 
Sbjct: 494 FGFAESAEMVFSSMPNKNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTV 553

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L  ++VS+ A L   + LH   I+    S++ V  +L+D Y +CG ++ +  +FE +P  
Sbjct: 554 L--VAVSSVAALLKGKTLHAYQIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMPRR 611

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           N+V + S++ GY  +G   EA+ + + M +    PD+VTFL ++  C+HSGMV+EG  +F
Sbjct: 612 NLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEGLNLF 671

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
             M+  YG++   +HY+ ++D+LGRAG LD A   ++  P   D  +W  LL +CR H N
Sbjct: 672 QLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFIRGMPIDADRSVWLCLLFACRAHRN 731

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             +G  VA+ L+++EP   + Y  + N Y E+  ++ +  +R +   R L +  G S IE
Sbjct: 732 MELGELVADNLLKMEPARGSNYVPLLNLYGEVEMWDRAANLRASMKGRGLKKSPGCSWIE 791

Query: 662 VNS 664
           V +
Sbjct: 792 VKN 794



 Score =  224 bits (570), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 167/597 (27%), Positives = 288/597 (48%), Gaps = 32/597 (5%)

Query: 12  TITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T  +L  TC S+  L     +  S      Q + Y +   I+ +VK G L SA ++FD+M
Sbjct: 57  TFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLINMYVKCGLLGSALQVFDKM 116

Query: 71  -----PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
                 A D+  +N +I G  K+ H ++ L  +  M                       +
Sbjct: 117 SESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRM-------------------QELSW 157

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLR 184
           Y  G QIH  ++   F  + Y+ + L+ +Y      + A  LF +L  R N+  WN+M+ 
Sbjct: 158 YMAGRQIHGYIIRNMFEGDPYLETALIGMYSSCSRPMEAWSLFGKLENRSNIVAWNVMIG 217

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            F E    ++ L +Y+  K E  +    SF      CS G +LD G+Q+H  VIK+ + D
Sbjct: 218 GFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHGEVLDFGRQVHCDVIKMNFQD 277

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            + +V  +L+  Y+  GS+ +AKK FD +   +V   N+++S +      +DAL L+ +M
Sbjct: 278 -DPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLYNKM 336

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +         +    L+  S  G+  FG+ +H  V K      +V +QSAL  MY KC  
Sbjct: 337 KAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSM-QSNVAIQSALLTMYYKCGS 395

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
            E + +VF +   R +    S++     +   KDA+++F  M  EG+  D   +++ + A
Sbjct: 396 TEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADSDVMTSVISA 455

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
                +  LG   L+H  AIK G ES++ V+CSL+D YS+ G  E +  VF  +P+ N+V
Sbjct: 456 GLGLENVELG--HLIHGFAIKRGLESDVFVACSLVDMYSKFGFAESAEMVFSSMPNKNLV 513

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + S+++ YS NG+   ++++L  ++Q G   D V+   VL   +    + +G+   ++ 
Sbjct: 514 AWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGK-TLHAY 572

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +    I +D Q  + +IDM  + G L  A+ + +  P   + + W+S++     HGN
Sbjct: 573 QIRLQIPSDLQVENALIDMYVKCGCLKYAQLIFENMP-RRNLVTWNSMIAGYGSHGN 628



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 140/549 (25%), Positives = 242/549 (44%), Gaps = 45/549 (8%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N Q + Y     +  + KSG +  AKK+FD++  +++   N +IS          AL LY
Sbjct: 274 NFQDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAMISAFIGNGRAYDALGLY 333

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           ++M +      + T SS+LS CS  G Y  G  +H  V+      N+ I S L+ +Y + 
Sbjct: 334 NKMKAGETPVDSFTISSLLSGCSVVGSYDFGRTVHAEVIKRSMQSNVAIQSALLTMYYKC 393

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G +  A  +F  + ER++  W  M+  FC+  R  + L ++  M+ EGV+ +      M 
Sbjct: 394 GSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLFRAMEKEGVKADS---DVMT 450

Query: 219 RGCSIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
              S G+ L+    G  +H   IK G ++ ++FVA +LVD YS  G    A+  F  +P 
Sbjct: 451 SVISAGLGLENVELGHLIHGFAIKRG-LESDVFVACSLVDMYSKFGFAESAEMVFSSMPN 509

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            ++++WNS++S Y+   L   ++ L  ++          S    L   S    +  GK +
Sbjct: 510 KNLVAWNSMISCYSWNGLPEMSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTL 569

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H Y  +L      + V++AL DMY KC  ++ +  +FE+ P R+L   NS++      GN
Sbjct: 570 HAYQIRLQIP-SDLQVENALIDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGN 628

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
            ++AV +F  M       DEVT    + + S S     G   L     I+ G E  +   
Sbjct: 629 CEEAVRLFKEMKRSETAPDEVTFLALITSCSHSGMVEEG-LNLFQLMRIEYGVEPRMEHY 687

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            S++D   R G ++ ++     +P                                  + 
Sbjct: 688 ASVVDLLGRAGRLDDAYSFIRGMP----------------------------------ID 713

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
            D+  +LC+L  C     ++ G+LV +++  +    A   +Y  ++++ G   + D+A  
Sbjct: 714 ADRSVWLCLLFACRAHRNMELGELVADNLLKME--PARGSNYVPLLNLYGEVEMWDRAAN 771

Query: 576 LLQQTPGGG 584
           L     G G
Sbjct: 772 LRASMKGRG 780



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 122/510 (23%), Positives = 244/510 (47%), Gaps = 32/510 (6%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           QAL L+ +     +  +  TF S+L  C++      G  IH  ++++G   + YI + L+
Sbjct: 38  QALELHSKTPHSALTTAKFTFPSLLKTCASLSNLYHGRTIHASIVTMGLQSDPYIATSLI 97

Query: 153 DLYMRMGPSVRALDLFDELPER-----NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
           ++Y++ G    AL +FD++ E      ++  WN ++  + +    +E L  + +M+    
Sbjct: 98  NMYVKCGLLGSALQVFDKMSESRDSAPDITVWNPVIDGYFKYGHFEEGLAQFCRMQE--- 154

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
               LS+ YM            G+Q+H ++I+    + + ++  AL+  YS+C   +EA 
Sbjct: 155 ----LSW-YMA-----------GRQIHGYIIR-NMFEGDPYLETALIGMYSSCSRPMEAW 197

Query: 268 KSFDFIP-VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
             F  +    ++++WN ++  + +  +   +LEL+   +    +    SF       S  
Sbjct: 198 SLFGKLENRSNIVAWNVMIGGFVENGMWEKSLELYSLAKNENCKLVSASFTGAFTACSHG 257

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
             + FG+Q+H  V K+ F     +V ++L  MY K   +E +  VF+    + +E  N++
Sbjct: 258 EVLDFGRQVHCDVIKMNF-QDDPYVCTSLLTMYAKSGSVEDAKKVFDQVLDKEVELRNAM 316

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +++ + +G   DA+ ++  M      +D  T+S+ L   SV  S + G  R +H   IK 
Sbjct: 317 ISAFIGNGRAYDALGLYNKMKAGETPVDSFTISSLLSGCSVVGSYDFG--RTVHAEVIKR 374

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
             +SN+A+  +L+  Y +CG  E +  VF  +   +VV + S++ G+ +N   ++ALD+ 
Sbjct: 375 SMQSNVAIQSALLTMYYKCGSTEDADSVFYTMKERDVVAWGSMIAGFCQNRRFKDALDLF 434

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M + G+  D      V++       V+ G L+ +      G+++D      ++DM  +
Sbjct: 435 RAMEKEGVKADSDVMTSVISAGLGLENVELGHLI-HGFAIKRGLESDVFVACSLVDMYSK 493

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
            G  + AE +    P   + + W+S++ SC
Sbjct: 494 FGFAESAEMVFSSMP-NKNLVAWNSMI-SC 521



 Score = 65.9 bits (159), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 56/208 (26%), Positives = 104/208 (50%), Gaps = 17/208 (8%)

Query: 2   LSTKLLPRVR---------TITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRT 50
           +S  LLP++          +ITT+    +S+  L     L +Y Q   Q+  ++   N  
Sbjct: 530 MSINLLPQILQHGFYLDSVSITTVLVAVSSVAALLKGKTLHAY-QIRLQIPSDLQVENAL 588

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID +VK G L  A+ +F+ MP R++VT+N +I+G G   + ++A+ L+ EM         
Sbjct: 589 IDMYVKCGCLKYAQLIFENMPRRNLVTWNSMIAGYGSHGNCEEAVRLFKEMKRSETAPDE 648

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLF 168
            TF ++++ CS++G   EG+ +  +++ + +G+   +   + +VDL  R G    A    
Sbjct: 649 VTFLALITSCSHSGMVEEGLNLF-QLMRIEYGVEPRMEHYASVVDLLGRAGRLDDAYSFI 707

Query: 169 DELP-ERNLATWNLMLRAFCELSRPDEV 195
             +P + + + W  +L A C   R  E+
Sbjct: 708 RGMPIDADRSVWLCLLFA-CRAHRNMEL 734


>gi|302797174|ref|XP_002980348.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
 gi|300151964|gb|EFJ18608.1| hypothetical protein SELMODRAFT_112174 [Selaginella moellendorffii]
          Length = 801

 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 194/635 (30%), Positives = 332/635 (52%), Gaps = 24/635 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           N  I  + K G L  AK+ FD +P    RD+VT+N +IS   +    ++AL L+ +M   
Sbjct: 46  NALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDHD 105

Query: 105 GIKESAS-TFSSVLSVCSNAGFYT-EGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           G     S TF SVL  C  AG  + E ++ IH R++  G     ++ + LVD Y ++G  
Sbjct: 106 GAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSL 165

Query: 162 VRALDLF----DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
             A ++F    DE P  +L T + M+ A  +   P E LR++  M  EG +P+G++   +
Sbjct: 166 DDAWEVFLRKSDEEPSTSLVTCSAMISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSV 225

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  CS+  +      +    +++     +  +   L+  Y+    L  A+ +FD I   D
Sbjct: 226 LNACSMLPVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLSRARATFDAIQSPD 285

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN----FASRTGNVYFGK 333
           V+SWN++ + Y  +    +AL LF RM L   RPS+ +F+  L     +  +T +   GK
Sbjct: 286 VVSWNAMAAAYLQHHRPREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASA-IGK 344

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC--CNSLMTSLL 391
           +I   + + G + G   V +A  +MY KC  +  + AVFE       +C   NS++ +  
Sbjct: 345 RIQSLLEEAGLE-GDTAVANATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYG 403

Query: 392 HSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           H G  K+A E+F  M  E  +  ++VT    L A +   S   G  R +H   + +GFES
Sbjct: 404 HHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQG--REIHARVVSNGFES 461

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEV 508
           +  +  +L++ Y++CG ++ +  +F+K  S   +V+ +TS++ GY++ G    AL +   
Sbjct: 462 DTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLVAGYAQYGQAERALKLFWT 521

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M Q+G+ P+ +TF+  L  CNH G +++G  + + M   +GI    +H+SC++D+LGR G
Sbjct: 522 MQQQGVRPNHITFISALTACNHGGKLEQGCELLSGMTPDHGIVPASKHFSCIVDLLGRCG 581

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
            LD+AE+LL++T    D + W +LL +C+       G R A  +M+L+P   + Y  +++
Sbjct: 582 RLDEAEKLLERT-SQADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLAS 640

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            Y+  G +  +  IR+T L + +  D G S +EVN
Sbjct: 641 MYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVN 675



 Score =  159 bits (403), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 126/501 (25%), Positives = 243/501 (48%), Gaps = 31/501 (6%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-- 172
           ++++ CS  G    G +IH ++    F  N  +G+ L+ +Y + G  + A   FD LP  
Sbjct: 12  ALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRA 71

Query: 173 -ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGC-SIGML-LD 228
            +R++ TWN M+ AF       E L+++  M  +G   PN ++F  ++  C   G+L L+
Sbjct: 72  SKRDVVTWNAMISAFLRNGSAREALQLFRDMDHDGAPPPNSVTFVSVLDSCVEAGLLSLE 131

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF----DFIPVDDVISWNSI 284
           + + +H  ++  G ++   FV  ALVD Y   GSL +A + F    D  P   +++ +++
Sbjct: 132 DVRAIHGRIVGAG-IEREAFVRTALVDSYGKLGSLDDAWEVFLRKSDEEPSTSLVTCSAM 190

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR----TGNVYFGKQIHGYVT 340
           +S         ++L LF+ M L   +PS  + V  LN  S     +   +  +Q    V+
Sbjct: 191 ISACWQNGWPQESLRLFYAMNLEGTKPSGVTLVSVLNACSMLPVGSATAFVLEQAMEVVS 250

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
               +     + + L   Y + N +  + A F++     +   N++  + L     ++A+
Sbjct: 251 ATRDN----VLGTTLLTTYARSNDLSRARATFDAIQSPDVVSWNAMAAAYLQHHRPREAL 306

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSV----SASANLGSCRLLHCCAIKSGFESNIAVSC 456
            +F  M+ EG+     T  T L A +     +ASA +G  + +     ++G E + AV+ 
Sbjct: 307 VLFERMLLEGVRPSVATFITALTACAAYPPQTASA-IG--KRIQSLLEEAGLEGDTAVAN 363

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFT--SIMNGYSRNGMGREALDMLEVMIQRGL 514
           + ++ Y++CG +  +  VFE+I      C T  S++  Y  +G+G+EA ++ + M    L
Sbjct: 364 ATLNMYAKCGSLADARAVFERISPTRRDCITWNSMLAAYGHHGLGKEAFELFQAMEAEKL 423

Query: 515 I-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           + P+KVTF+ VL        + +G+ +   + S  G ++D    + +++M  + G LD A
Sbjct: 424 VKPNKVTFVAVLDASTSRTSIAQGREIHARVVS-NGFESDTVIQNALLNMYAKCGSLDDA 482

Query: 574 EELLQQTPGGG-DCMMWSSLL 593
           + +  ++     D + W+SL+
Sbjct: 483 QAIFDKSSSNQEDVIAWTSLV 503


>gi|356553444|ref|XP_003545066.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Glycine max]
          Length = 1033

 Score =  298 bits (762), Expect = 9e-78,   Method: Compositional matrix adjust.
 Identities = 183/628 (29%), Positives = 340/628 (54%), Gaps = 16/628 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  +  +  F + G ++SAK +F++M  R+ VT N L+ G  +    ++A  ++ EM 
Sbjct: 284 DLYVGSALVSGFARYGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEM- 342

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGF-GLNLYIGSPLVDLYMR 157
              ++ +AS+++ +LS  +      EG     ++H  ++      + + IG+ LV+LY +
Sbjct: 343 KDLVEINASSYAVLLSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAK 402

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
                 A  +F  +P ++  +WN ++       R +E +  ++ M+  G+ P+  S    
Sbjct: 403 CNAIDNARSIFQLMPSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVIST 462

Query: 218 VRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +  C S+G ++  G+Q+H   IK G +D+++ V+NAL+  Y+    + E +K F  +P  
Sbjct: 463 LSSCASLGWIM-LGQQIHGEGIKCG-LDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEY 520

Query: 277 DVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           D +SWNS +   A  +  +  A++ F  M     +P+  +F+  L+  S    +  G+QI
Sbjct: 521 DQVSWNSFIGALATSEASVLQAIKYFLEMMQAGWKPNRVTFINILSAVSSLSLLELGRQI 580

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHSG 394
           H  + K      +  +++ L   YGKC  +E    +F     R  E   N++++  +H+G
Sbjct: 581 HALILKHSVADDNA-IENTLLAFYGKCEQMEDCEIIFSRMSERRDEVSWNAMISGYIHNG 639

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
            +  A+ +   M+ +G  LD+ TL+T L A +  A+   G    +H CAI++  E+ + V
Sbjct: 640 ILHKAMGLVWLMMQKGQRLDDFTLATVLSACASVATLERG--MEVHACAIRACLEAEVVV 697

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+D Y++CG I+ + + FE +P  N+  + S+++GY+R+G G +AL +   M Q G 
Sbjct: 698 GSALVDMYAKCGKIDYASRFFELMPVRNIYSWNSMISGYARHGHGGKALKLFTQMKQHGQ 757

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           +PD VTF+ VL+ C+H G+V EG   F SM  VY +    +H+SCM+D+LGRAG + K E
Sbjct: 758 LPDHVTFVGVLSACSHVGLVDEGFEHFKSMGEVYELAPRIEHFSCMVDLLGRAGDVKKLE 817

Query: 575 ELLQQTPGGGDCMMWSSLLRS-CRVHG-NEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           E ++  P   + ++W ++L + CR +  N  +GRR A +L+ELEP++   Y  +SN ++ 
Sbjct: 818 EFIKTMPMNPNALIWRTILGACCRANSRNTELGRRAAKMLIELEPLNAVNYVLLSNMHAA 877

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLI 660
            G++E   + R      ++ ++ G S +
Sbjct: 878 GGKWEDVEEARLAMRNAEVKKEAGCSWV 905



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 125/501 (24%), Positives = 252/501 (50%), Gaps = 32/501 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  ++ FV++G+L SA+KLFDEMP +++V+++ L+SG  +   P +A  L+  ++
Sbjct: 73  DVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNGMPDEACMLFRGII 132

Query: 103 SHGIKESASTFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           S G+  +     S L  C   G      G++IH  +    +  ++ + + L+ +Y     
Sbjct: 133 SAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYASDMVLSNVLMSMYSHCSA 192

Query: 161 SV-RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE----PNGLSFC 215
           S+  A  +F+E+  +  A+WN ++  +C         ++++ M+ E  E    PN  +FC
Sbjct: 193 SIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQREATELNCRPNEYTFC 252

Query: 216 YMVR-GCSI---GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            +V   CS+   G+ L E  Q+ + + K  +V  +++V +ALV  ++  G +  AK  F+
Sbjct: 253 SLVTVACSLVDCGLTLLE--QMLARIEKSSFVK-DLYVGSALVSGFARYGLIDSAKMIFE 309

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ-LCRKRPS-----IRSFVEFLNFASR 325
            +   + ++ N ++   A      +A ++F  M+ L     S     + +F EF N    
Sbjct: 310 QMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDLVEINASSYAVLLSAFTEFSNLKEG 369

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
                 G+++H Y+ +       + + +AL ++Y KCN I+++ ++F+  P +     NS
Sbjct: 370 KRK---GQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLMPSKDTVSWNS 426

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCC 442
           +++ L H+   ++AV  F  M   G+   + ++ +TL     S+ A+LG   L   +H  
Sbjct: 427 IISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTL-----SSCASLGWIMLGQQIHGE 481

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG-RE 501
            IK G + +++VS +L+  Y+    +E   +VF  +P  + V + S +   + +     +
Sbjct: 482 GIKCGLDLDVSVSNALLTLYAETDCMEEYQKVFFLMPEYDQVSWNSFIGALATSEASVLQ 541

Query: 502 ALDMLEVMIQRGLIPDKVTFL 522
           A+     M+Q G  P++VTF+
Sbjct: 542 AIKYFLEMMQAGWKPNRVTFI 562



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 111/475 (23%), Positives = 230/475 (48%), Gaps = 17/475 (3%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H ++   G   +++  + LV++++R G  V A  LFDE+P++NL +W+ ++  + +  
Sbjct: 60  QLHLQIYKTGLTSDVFWCNTLVNIFVRAGNLVSAQKLFDEMPQKNLVSWSCLVSGYAQNG 119

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IG-MLLDEGKQLHSHVIKLGWVDVNIF 248
            PDE   ++  + + G+ PN  +    +R C  +G  +L  G ++H  + K  +   ++ 
Sbjct: 120 MPDEACMLFRGIISAGLLPNHYAIGSALRACQELGPNMLKLGMEIHGLISKSPYAS-DMV 178

Query: 249 VANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           ++N L+  YS C  S+ +A++ F+ I +    SWNSI+S+Y        A +LF  MQ  
Sbjct: 179 LSNVLMSMYSHCSASIDDARRVFEEIKMKTSASWNSIISVYCRRGDAISAFKLFSSMQRE 238

Query: 308 RK----RPSIRSFVEFLNFASRTGN--VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
                 RP+  +F   +  A    +  +   +Q+   + K  F    ++V SAL   + +
Sbjct: 239 ATELNCRPNEYTFCSLVTVACSLVDCGLTLLEQMLARIEKSSFVK-DLYVGSALVSGFAR 297

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
             +I+S+  +FE    R+    N LM  L      ++A ++F  M D  + ++  + +  
Sbjct: 298 YGLIDSAKMIFEQMDDRNAVTMNGLMVGLARQHQGEEAAKIFKEMKDL-VEINASSYAVL 356

Query: 422 LKALSVSASANLGSCR--LLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           L A +  ++   G  +   +H   I++   +  I +  +L++ Y++C  I+ +  +F+ +
Sbjct: 357 LSAFTEFSNLKEGKRKGQEVHAYLIRNALVDVWILIGNALVNLYAKCNAIDNARSIFQLM 416

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           PS + V + SI++G   N    EA+     M + G++P K + +  L+ C   G +  GQ
Sbjct: 417 PSKDTVSWNSIISGLDHNERFEEAVACFHTMRRNGMVPSKFSVISTLSSCASLGWIMLGQ 476

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            +        G+D D    + ++ +      +++ +++    P   D + W+S +
Sbjct: 477 QIHGEGIKC-GLDLDVSVSNALLTLYAETDCMEEYQKVFFLMP-EYDQVSWNSFI 529


>gi|255541924|ref|XP_002512026.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549206|gb|EEF50695.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 810

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 187/624 (29%), Positives = 331/624 (53%), Gaps = 7/624 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++  N  I  + K G +++A K+F  MP R++V++N +ISG  +    K    +  EM
Sbjct: 64  LDVFVGNALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEM 123

Query: 102 VS--HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           ++   G+    +T  +VL VC+       GI+IH   + LG   ++ + + LVD+Y + G
Sbjct: 124 MAGEEGLLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCG 183

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMV 218
               A  LFD+   +N  +WN M+   C      E   ++ +M+  E +E N ++   ++
Sbjct: 184 YLTEAQMLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNIL 243

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C     L   K+LH + I+ G+   +  VAN  V  Y+ CG LI A++ F  +    V
Sbjct: 244 PACLEISQLRSLKELHGYSIRHGF-QYDELVANGFVAAYAKCGMLICAERVFYSMETKTV 302

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            SWN+++   A       AL L+ +M      P   +    L  ++   ++ +GK++HG+
Sbjct: 303 NSWNALIGGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGF 362

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V + G +  S  +  +L  +Y  C    S+  +F+    +S    N++++    +G  +D
Sbjct: 363 VLRHGLEIDSF-IGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPED 421

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  +V +G    ++ + + L A S  ++  LG  +  HC A+K+    ++ V+CS 
Sbjct: 422 ALILFRKLVSDGFQPSDIAVVSVLGACSQQSALRLG--KETHCYALKALLMEDVFVACST 479

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++ G I+ S  VF+ + + ++  + +I+  Y  +G G E++++ E M + G +PD 
Sbjct: 480 IDMYAKSGCIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDG 539

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            TF+ +L  C+H+G+V+EG   FN M++ +GI+   +HY+C++DMLGRAG LD A  L+ 
Sbjct: 540 FTFIGILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVH 599

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           + P   D  +WSSLL  CR  G   IG+ VA  L+ELEP +   Y  +SN Y+  G ++ 
Sbjct: 600 EMPEQPDSRVWSSLLSFCRNFGELEIGQIVAEKLLELEPKNVENYVSLSNLYAGSGRWDD 659

Query: 639 SMQIRETALARKLTRDIGHSLIEV 662
             ++R+      L +D G S IE+
Sbjct: 660 VRRVRQMIKDIGLQKDAGCSWIEL 683



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/498 (24%), Positives = 241/498 (48%), Gaps = 19/498 (3%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TF  V+  C+ +     G  IH  V+ +G  L++++G+ L+ +Y + G    A+ +F  +
Sbjct: 33  TFPCVIKACTGSLDRGLGEVIHGMVIKMGLLLDVFVGNALIAMYGKFGFVDAAVKVFHYM 92

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKA--EGVEPNGLSFCYMVRGCSIGMLLDE 229
           P RNL +WN ++  F E     +   M  +M A  EG+ P+  +   ++  C+  + +  
Sbjct: 93  PVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCAREVDVQM 152

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G ++H   +KLG +  ++ V N+LVD YS CG L EA+  FD     + +SWN+++    
Sbjct: 153 GIRIHGLAVKLG-LSEDVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTMIGGLC 211

Query: 290 DYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
               IF+A  LF  MQ+      +  + +  L        +   K++HGY  + GF +  
Sbjct: 212 TKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEISQLRSLKELHGYSIRHGFQYDE 271

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           + V +     Y KC ++  +  VF S   +++   N+L+     +G+ + A+ ++  M  
Sbjct: 272 L-VANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALNLYIQMTY 330

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRC 465
            G+  D  T+ + L      ASA+L S R    +H   ++ G E +  +  SL+  Y  C
Sbjct: 331 SGLVPDWFTIGSLL-----LASAHLKSLRYGKEVHGFVLRHGLEIDSFIGISLLSLYIHC 385

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G    +  +F+ +   + V + ++++GYS+NG+  +AL +   ++  G  P  +  + VL
Sbjct: 386 GESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRKLVSDGFQPSDIAVVSVL 445

Query: 526 AGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQQTPGG 583
             C+    ++ G+     ++K++   D      +C  IDM  ++G + ++  +       
Sbjct: 446 GACSQQSALRLGKETHCYALKALLMEDV---FVACSTIDMYAKSGCIKESRSVFDGLK-N 501

Query: 584 GDCMMWSSLLRSCRVHGN 601
            D   W++++ +  VHG+
Sbjct: 502 KDLASWNAIIAAYGVHGD 519



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 175/336 (52%), Gaps = 9/336 (2%)

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            +  +F  +++ C+  +    G+ +H  VIK+G + +++FV NAL+  Y   G +  A K
Sbjct: 29  ADNFTFPCVIKACTGSLDRGLGEVIHGMVIKMGLL-LDVFVGNALIAMYGKFGFVDAAVK 87

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR--PSIRSFVEFLNFASRT 326
            F ++PV +++SWNSI+S +++     D  ++   M    +   P I + V  L   +R 
Sbjct: 88  VFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGLLPDIATLVTVLPVCARE 147

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
            +V  G +IHG   KLG     V V ++L DMY KC  +  +  +F+    ++    N++
Sbjct: 148 VDVQMGIRIHGLAVKLGLSE-DVRVNNSLVDMYSKCGYLTEAQMLFDKNNRKNAVSWNTM 206

Query: 387 MTSLLHSGNIKDAVEMFGFM-VDEGIGLDEVTLSTTLKA-LSVSASANLGSCRLLHCCAI 444
           +  L   G I +A  +F  M + E I ++EVT+   L A L +S    L S + LH  +I
Sbjct: 207 IGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEIS---QLRSLKELHGYSI 263

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           + GF+ +  V+   + AY++CG +  + +VF  + +  V  + +++ G ++NG  R+AL+
Sbjct: 264 RHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALIGGCAQNGDPRKALN 323

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           +   M   GL+PD  T   +L    H   ++ G+ V
Sbjct: 324 LYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEV 359



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 115/496 (23%), Positives = 231/496 (46%), Gaps = 11/496 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           LLP + T+ T+ P C   V +   + +     +     ++  +N  +D + K G+L  A+
Sbjct: 130 LLPDIATLVTVLPVCAREVDVQMGIRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQ 189

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFSSVLSVCSNA 123
            LFD+   ++ V++N +I G     +  +A  L+ EM +   I+ +  T  ++L  C   
Sbjct: 190 MLFDKNNRKNAVSWNTMIGGLCTKGYIFEAFNLFREMQMQEDIEVNEVTVLNILPACLEI 249

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                  ++H   +  GF  +  + +  V  Y + G  + A  +F  +  + + +WN ++
Sbjct: 250 SQLRSLKELHGYSIRHGFQYDELVANGFVAAYAKCGMLICAERVFYSMETKTVNSWNALI 309

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
               +   P + L +Y +M   G+ P+  +   ++   +    L  GK++H  V++ G +
Sbjct: 310 GGCAQNGDPRKALNLYIQMTYSGLVPDWFTIGSLLLASAHLKSLRYGKEVHGFVLRHG-L 368

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           +++ F+  +L+  Y  CG    A+  FD +     +SWN+++S Y+   L  DAL LF +
Sbjct: 369 EIDSFIGISLLSLYIHCGESSSARLLFDGMEEKSSVSWNAMISGYSQNGLPEDALILFRK 428

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +     +PS  + V  L   S+   +  GK+ H Y  K       V V  +  DMY K  
Sbjct: 429 LVSDGFQPSDIAVVSVLGACSQQSALRLGKETHCYALK-ALLMEDVFVACSTIDMYAKSG 487

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            I+ S +VF+    + L   N+++ +    G+ ++++E+F  M   G   D  T    + 
Sbjct: 488 CIKESRSVFDGLKNKDLASWNAIIAAYGVHGDGEESIELFERMRKVGQMPDGFTF---IG 544

Query: 424 ALSVSASANLGSCRLLHCCAIKS--GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-S 480
            L+V + A L    L +   +++  G E  +     +MD   R G ++ + ++  ++P  
Sbjct: 545 ILTVCSHAGLVEEGLKYFNEMQNFHGIEPKLEHYACVMDMLGRAGRLDDALRLVHEMPEQ 604

Query: 481 PNVVCFTSIMNGYSRN 496
           P+   ++S+++ + RN
Sbjct: 605 PDSRVWSSLLS-FCRN 619



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 101/199 (50%), Gaps = 7/199 (3%)

Query: 398 DAVEMF-GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           DA++MF   + D     D  T    +KA + S    LG   ++H   IK G   ++ V  
Sbjct: 13  DAIDMFVKLITDTEFNADNFTFPCVIKACTGSLDRGLG--EVIHGMVIKMGLLLDVFVGN 70

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI--QRGL 514
           +L+  Y + G ++ + +VF  +P  N+V + SI++G+S NG  ++  DML  M+  + GL
Sbjct: 71  ALIAMYGKFGFVDAAVKVFHYMPVRNLVSWNSIISGFSENGFSKDCFDMLVEMMAGEEGL 130

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           +PD  T + VL  C     V+ G +  + +    G+  D +  + ++DM  + G L +A+
Sbjct: 131 LPDIATLVTVLPVCAREVDVQMG-IRIHGLAVKLGLSEDVRVNNSLVDMYSKCGYLTEAQ 189

Query: 575 ELLQQTPGGGDCMMWSSLL 593
            L  +     + + W++++
Sbjct: 190 MLFDKN-NRKNAVSWNTMI 207


>gi|357130409|ref|XP_003566841.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 815

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 184/619 (29%), Positives = 321/619 (51%), Gaps = 5/619 (0%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  +  ++ +   G L++A+ +   +P R  V++N L++G  +    ++ + + +++V+ 
Sbjct: 187 YVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGDYRRVMIIIEKLVAS 246

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G + S  T  +VL  C   G    G  +H  V+  G   +  + S LV++Y R   +  A
Sbjct: 247 GDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNVLNSCLVEMYSRCLSAEEA 306

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            ++F  + E ++   + M+  F       E L ++ KM   GV+PN   F  +    S  
Sbjct: 307 YEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKPNHYIFVGIAGVASRT 366

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              +  + +H++++K G+  +   V +A+++ Y   G++ +A  +FD I   D  SWN+I
Sbjct: 367 GDANLCRSVHAYIVKSGFAMLK-GVGDAILNMYVKVGAVQDATVTFDLIHEPDTFSWNTI 425

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S +         L +F +M       +  ++V  L   +   N+ FG Q+H  + K G 
Sbjct: 426 LSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMNLRFGTQVHACILKSGL 485

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
            + +  V   L DMY +     S+  VFE    R       +M+    +   +  VE F 
Sbjct: 486 QNDT-DVSRMLVDMYAQSGCFTSACLVFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFR 544

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+ E I   + TL+ +L   S  AS  LGS   LH  AIKSG+ S++ VS +L+D Y +
Sbjct: 545 SMLRENIRPSDATLAVSLSVCSDMAS--LGSGLQLHSWAIKSGWNSSV-VSGALVDMYVK 601

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG+I  +  +F +  + + V + +I+ GYS++G G +ALD  + M+  G  PD +TF+ V
Sbjct: 602 CGNIADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGV 661

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+ C+H+G++ EG+  F S+ S+YGI    +HY+CM+D+L +AG L +AE L+ Q P   
Sbjct: 662 LSACSHAGLLNEGRKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAP 721

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           D  +W ++L +CR+H N  I  R A  L ELEP D +    +SN Y+++G +    ++R 
Sbjct: 722 DSSIWRTILGACRIHRNIEIAERAAERLFELEPHDASSSILLSNIYADLGRWSDVTRVRN 781

Query: 645 TALARKLTRDIGHSLIEVN 663
             L   + ++ G S IE+N
Sbjct: 782 ILLDHGVKKEPGCSWIEIN 800



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/549 (26%), Positives = 262/549 (47%), Gaps = 9/549 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G L  A+++FD MP RD+V +  +IS         QAL ++  M   GI  +  T 
Sbjct: 95  YCKCGRLVDARRVFDGMPHRDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTL 154

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +SVL  CS         Q+H +V+ L    + Y+GS LV+ Y   G    A  +   LPE
Sbjct: 155 ASVLKACSGGSHSKFTHQVHGQVVKLNGLDDPYVGSSLVEAYTSCGELDAAETVLLGLPE 214

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+  +WN +L  +        V+ +  K+ A G E +  +   +++ C    L   G+ +
Sbjct: 215 RSDVSWNALLNGYARHGDYRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSV 274

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+ VIK G ++ +  + + LV+ YS C S  EA + F  I   DV+  ++++S +  +D+
Sbjct: 275 HASVIKRG-LETDNVLNSCLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDM 333

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
            ++AL+LF +M     +P+   FV     ASRTG+    + +H Y+ K GF      V  
Sbjct: 334 AWEALDLFVKMSGMGVKPNHYIFVGIAGVASRTGDANLCRSVHAYIVKSGFAMLK-GVGD 392

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           A+ +MY K   ++ +   F+          N+++++     N +  + +F  M  EG   
Sbjct: 393 AILNMYVKVGAVQDATVTFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSA 452

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           ++ T  + L+  +   +   G+   +H C +KSG +++  VS  L+D Y++ G    +  
Sbjct: 453 NKYTYVSVLRCCTSLMNLRFGT--QVHACILKSGLQNDTDVSRMLVDMYAQSGCFTSACL 510

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VFE++   +   +T IM+GY++     + ++    M++  + P   T    L+ C+    
Sbjct: 511 VFEQLKERDAFSWTVIMSGYAKTEEAEKVVEYFRSMLRENIRPSDATLAVSLSVCSDMAS 570

Query: 534 VKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  G QL   ++KS +           ++DM  + G +  AE L  ++    D + W+++
Sbjct: 571 LGSGLQLHSWAIKSGWNSSVVS---GALVDMYVKCGNIADAEMLFHESE-TRDQVAWNTI 626

Query: 593 LRSCRVHGN 601
           +     HG+
Sbjct: 627 ICGYSQHGH 635



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 111/481 (23%), Positives = 218/481 (45%), Gaps = 8/481 (1%)

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           ++ L  C+       G ++H R+L      + ++   L+++Y + G  V A  +FD +P 
Sbjct: 54  AAALQDCAVRRTLRRGQELHARLLRSALHPDTFLLDSLLNMYCKCGRLVDARRVFDGMPH 113

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++  W  M+ A       D+ L M+ +M  EG+ PNG +   +++ CS G       Q+
Sbjct: 114 RDIVAWTAMISAHTAAGDSDQALDMFARMNQEGIAPNGFTLASVLKACSGGSHSKFTHQV 173

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  V+KL  +D + +V ++LV+ Y++CG L  A+     +P    +SWN++++ YA +  
Sbjct: 174 HGQVVKLNGLD-DPYVGSSLVEAYTSCGELDAAETVLLGLPERSDVSWNALLNGYARHGD 232

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
               + +  ++       S  +    L      G   +G+ +H  V K G +  +V + S
Sbjct: 233 YRRVMIIIEKLVASGDEISKYTLPTVLKCCMELGLAKYGQSVHASVIKRGLETDNV-LNS 291

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
            L +MY +C   E +  VF       +  C+++++         +A+++F  M   G+  
Sbjct: 292 CLVEMYSRCLSAEEAYEVFIRIDEPDVVHCSAMISCFDRHDMAWEALDLFVKMSGMGVKP 351

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           +           S +  ANL  CR +H   +KSGF     V  ++++ Y + G ++ +  
Sbjct: 352 NHYIFVGIAGVASRTGDANL--CRSVHAYIVKSGFAMLKGVGDAILNMYVKVGAVQDATV 409

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
            F+ I  P+   + +I++ +       + L + + M   G   +K T++ VL  C     
Sbjct: 410 TFDLIHEPDTFSWNTILSAFYSGSNCEQGLRIFKQMACEGFSANKYTYVSVLRCCTSLMN 469

Query: 534 VKEGQLVFNS-MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           ++ G  V    +KS  G+  D      ++DM  ++G    A  + +Q     D   W+ +
Sbjct: 470 LRFGTQVHACILKS--GLQNDTDVSRMLVDMYAQSGCFTSACLVFEQLK-ERDAFSWTVI 526

Query: 593 L 593
           +
Sbjct: 527 M 527



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 58/198 (29%), Positives = 96/198 (48%), Gaps = 5/198 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML   + P   T+      C+ +  L S L L S+   +   +   S   +D +VK G++
Sbjct: 546 MLRENIRPSDATLAVSLSVCSDMASLGSGLQLHSWAIKSGWNSSVVSGALVDMYVKCGNI 605

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A+ LF E   RD V +N +I G  +  H  +AL  + +MV  G +    TF  VLS C
Sbjct: 606 ADAEMLFHESETRDQVAWNTIICGYSQHGHGYKALDAFKQMVDEGKRPDGITFVGVLSAC 665

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
           S+AG   EG + + + LS  +G+   +   + +VD+  + G  V A  L +++P   + +
Sbjct: 666 SHAGLLNEG-RKYFKSLSSIYGITPTMEHYACMVDILSKAGRLVEAESLINQMPLAPDSS 724

Query: 178 TWNLMLRAFCELSRPDEV 195
            W  +L A C + R  E+
Sbjct: 725 IWRTILGA-CRIHRNIEI 741


>gi|115453719|ref|NP_001050460.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|108709057|gb|ABF96852.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|113548931|dbj|BAF12374.1| Os03g0441400 [Oryza sativa Japonica Group]
 gi|215767379|dbj|BAG99607.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 837

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 182/620 (29%), Positives = 327/620 (52%), Gaps = 18/620 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++ +N  ++ + K G L SA++LFD MP R+MV++  L+    +    + A  L+  
Sbjct: 93  RLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152

Query: 101 MV--SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +    H + +   T    L++  +A     G+  H     LG   N ++GS L+D Y   
Sbjct: 153 LRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGV--HSCAWKLGHDHNAFVGSGLIDAYSLC 210

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A  +F+ +  ++   W  M+  + E   P+   R+++KM+  G +PN  +   ++
Sbjct: 211 SLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVL 270

Query: 219 RG--CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +   C   ++L  GK +H   IK    D    V  AL+D Y+ CG + +A+ +F+ IP D
Sbjct: 271 KAAVCLPSVVL--GKGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DVI  + ++S YA  +    A ELF R+      P+  S    L   +    + FGKQIH
Sbjct: 328 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIH 387

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +  K+G +   + V +AL D Y KCN ++SS+ +F S    +    N+++     SG  
Sbjct: 388 NHAIKIGHE-SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLG 446

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++A+ +F  M    +   +VT S+ L+A + +AS  +     +HC   KS F ++  +  
Sbjct: 447 EEALSVFCEMQAAQMPCTQVTYSSVLRACASTAS--IRHAGQIHCSIEKSTFNNDTVIGN 504

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+D Y++CG+I  + +VF+ +   +++ + +I++GY+ +G   +AL++ + M +  +  
Sbjct: 505 SLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVES 564

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + +TF+ +L+ C+ +G+V  G  +F+SM+  +GI    +HY+C++ +LGRAG L+ A + 
Sbjct: 565 NDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQF 624

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +   P     M+W +LL SC +H N  +GR  A  ++E+EP D   Y  +SN Y+  G  
Sbjct: 625 IGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSL 684

Query: 637 EVSMQIRETALARKLTRDIG 656
           +      + AL RK  R+IG
Sbjct: 685 D------QVALLRKSMRNIG 698


>gi|449458783|ref|XP_004147126.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Cucumis sativus]
          Length = 821

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 169/617 (27%), Positives = 325/617 (52%), Gaps = 11/617 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           F K G +N A ++F+ +  +    Y+ ++ G  K    + AL     M    +K     F
Sbjct: 91  FSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVKPVVYNF 150

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           + +L VC +      G +IH ++++  F  N++  + +V++Y +      A  +FD +PE
Sbjct: 151 TYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAMTGVVNMYAKCRQIDDAYKMFDRMPE 210

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+L +WN ++  F +     + L +  +M+ EG  P+ ++   ++   +   LL  GK +
Sbjct: 211 RDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGLLMVGKSI 270

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H + I+ G+  + + ++ AL D YS CGS+  A+  FD +    V+SWNS++  Y     
Sbjct: 271 HGYAIRAGFAKL-VNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMDGYVQNGE 329

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
              A+ +F +M      P+  + +E L+  +  G++  GK +H +V +L      + V +
Sbjct: 330 PEKAIAVFEKMLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLG-SDISVMN 388

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           +L  MY KC  ++ +  +F +  GR+    N+++     +G + +A+  F  M   G+  
Sbjct: 389 SLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKP 448

Query: 414 DEVTLSTTLKAL---SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           D  T+ + + AL   SV+  A     + +H   I+S  + NI V+ +L+D YS+CG I +
Sbjct: 449 DSFTMVSVIPALAELSVTRHA-----KWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHM 503

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + ++F+ I   +V+ + ++++GY  +G+GR ALD+ + M +  + P+ +T+L V++ C+H
Sbjct: 504 ARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSH 563

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG+V EG   F SMK  YG++    HY  M+D+LGRAG + +A + ++  P      ++ 
Sbjct: 564 SGLVDEGLRHFKSMKQDYGLEPSMDHYGAMVDLLGRAGRIKEAWDFIENMPISPGITVYG 623

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           +   +C++H N  +G + A  L EL P +   +  ++N Y+   ++    ++R+T   + 
Sbjct: 624 AXXGACKIHKNIEVGEKAAKKLFELNPDEGGYHVLLANIYASTSKWSKVAEVRKTMEKKG 683

Query: 651 LTRDIGHSLIEV-NSCH 666
           L +  G S++E+ N  H
Sbjct: 684 LKKTPGCSVVELRNEVH 700



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 126/488 (25%), Positives = 240/488 (49%), Gaps = 22/488 (4%)

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + LV L+ + G    A  +F+ + ++  A ++ ML+ + + S  +  L    +M+ + V+
Sbjct: 85  TKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETALAFLCRMRYDDVK 144

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P   +F Y+++ C     L  GK++H  +I   +   N+F    +V+ Y+ C  + +A K
Sbjct: 145 PVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFA-ANVFAMTGVVNMYAKCRQIDDAYK 203

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +P  D++SWN+I++ ++       ALEL  RMQ   +RP   + V  L  A+  G 
Sbjct: 204 MFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQDEGQRPDSITLVTVLPAAADVGL 263

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  GK IHGY  + GF    V++ +AL DMY KC  +E++  +F+    +++   NS+M 
Sbjct: 264 LMVGKSIHGYAIRAGFAK-LVNISTALADMYSKCGSVETARLIFDGMDQKTVVSWNSMMD 322

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIK 445
             + +G  + A+ +F  M++EGI    VT+   L      A A+LG     + +H    +
Sbjct: 323 GYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALH-----ACADLGDLERGKFVHKFVDQ 377

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
               S+I+V  SL+  YS+C  ++++  +F  +     V + +++ GY++NG   EAL+ 
Sbjct: 378 LNLGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNC 437

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDML 564
              M   G+ PD  T + V+       + +  + +    ++S   +D +    + ++DM 
Sbjct: 438 FSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRSC--LDKNIFVTTALVDMY 495

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL-----EPVD 619
            + G +  A +L          + W++++     HG   +GR   ++  ++     EP D
Sbjct: 496 SKCGAIHMARKLFDMI-SDRHVITWNAMIDGYGTHG---LGRAALDLFDKMKKGAVEPND 551

Query: 620 FAVYSQVS 627
               S +S
Sbjct: 552 ITYLSVIS 559



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 215/447 (48%), Gaps = 8/447 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+++    ++ + K   ++ A K+FD MP RD+V++N +I+G  +    K+AL L   M 
Sbjct: 181 NVFAMTGVVNMYAKCRQIDDAYKMFDRMPERDLVSWNTIIAGFSQNGFAKKALELVLRMQ 240

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G +  + T  +VL   ++ G    G  IH   +  GF   + I + L D+Y + G   
Sbjct: 241 DEGQRPDSITLVTVLPAAADVGLLMVGKSIHGYAIRAGFAKLVNISTALADMYSKCGSVE 300

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD + ++ + +WN M+  + +   P++ + ++ KM  EG++P G++    +  C+
Sbjct: 301 TARLIFDGMDQKTVVSWNSMMDGYVQNGEPEKAIAVFEKMLEEGIDPTGVTIMEALHACA 360

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ GK +H  V +L  +  +I V N+L+  YS C  +  A   F+ +     +SWN
Sbjct: 361 DLGDLERGKFVHKFVDQLN-LGSDISVMNSLISMYSKCKRVDIASDIFNNLNGRTHVSWN 419

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  YA    + +AL  F  M+    +P   + V  +   +        K IHG + + 
Sbjct: 420 AMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPALAELSVTRHAKWIHGLIIRS 479

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D  ++ V +AL DMY KC  I  +  +F+    R +   N+++      G  + A+++
Sbjct: 480 CLDK-NIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITWNAMIDGYGTHGLGRAALDL 538

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS--GFESNIAVSCSLMD 460
           F  M    +  +++T  + + A S S   + G   L H  ++K   G E ++    +++D
Sbjct: 539 FDKMKKGAVEPNDITYLSVISACSHSGLVDEG---LRHFKSMKQDYGLEPSMDHYGAMVD 595

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCF 486
              R G I+ +    E +P SP +  +
Sbjct: 596 LLGRAGRIKEAWDFIENMPISPGITVY 622



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/274 (25%), Positives = 124/274 (45%), Gaps = 4/274 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   TI      C  +  L     +  +  Q N   +I   N  I  + K   
Sbjct: 340 MLEEGIDPTGVTIMEALHACADLGDLERGKFVHKFVDQLNLGSDISVMNSLISMYSKCKR 399

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A  +F+ +  R  V++N +I G  +     +AL  + EM S G+K  + T  SV+  
Sbjct: 400 VDIASDIFNNLNGRTHVSWNAMILGYAQNGRVSEALNCFSEMKSLGMKPDSFTMVSVIPA 459

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            +          IH  ++      N+++ + LVD+Y + G    A  LFD + +R++ TW
Sbjct: 460 LAELSVTRHAKWIHGLIIRSCLDKNIFVTTALVDMYSKCGAIHMARKLFDMISDRHVITW 519

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  +         L +++KMK   VEPN +++  ++  CS   L+DEG +    + +
Sbjct: 520 NAMIDGYGTHGLGRAALDLFDKMKKGAVEPNDITYLSVISACSHSGLVDEGLRHFKSMKQ 579

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++ ++    A+VD     G + EA   +DFI
Sbjct: 580 DYGLEPSMDHYGAMVDLLGRAGRIKEA---WDFI 610



 Score = 39.3 bits (90), Expect = 6.7,   Method: Compositional matrix adjust.
 Identities = 35/156 (22%), Positives = 70/156 (44%), Gaps = 14/156 (8%)

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           IK+G  +       L+  +S+ G I  + +VFE I       + +++ GY++N     AL
Sbjct: 73  IKNGLYNEHLFQTKLVSLFSKYGSINEAARVFEPIDDKLDALYHTMLKGYAKNSSLETAL 132

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK-----EGQLVFNSMKS-VYGIDADRQHY 557
             L  M    + P    F  +L  C  +  +K      GQL+ NS  + V+ +       
Sbjct: 133 AFLCRMRYDDVKPVVYNFTYLLKVCGDNADLKRGKEIHGQLITNSFAANVFAM------- 185

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           + +++M  +   +D A ++  + P   D + W++++
Sbjct: 186 TGVVNMYAKCRQIDDAYKMFDRMP-ERDLVSWNTII 220


>gi|302758642|ref|XP_002962744.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
 gi|300169605|gb|EFJ36207.1| hypothetical protein SELMODRAFT_78092 [Selaginella moellendorffii]
          Length = 935

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 195/635 (30%), Positives = 332/635 (52%), Gaps = 24/635 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           N  I  + K G L  AK+ FD +P    RD+VT+N +IS   +    ++AL L+ +M   
Sbjct: 180 NALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMISAFLRNGSAREALQLFRDMDRD 239

Query: 105 GIKESAS-TFSSVLSVCSNAGFYT-EGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           G     S TF SVL  C  AG  + E ++ IH R++  G     ++ + LVD Y ++G  
Sbjct: 240 GAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGAGIEREAFVRTALVDSYGKLGSL 299

Query: 162 VRALDLF----DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
             A ++F    DE P  +L T + M+ A  +   P E LR++  M  EG +P+G++   +
Sbjct: 300 DDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSV 359

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  CS+  +      +    +++     +  +   L+  Y+    L  A+ +FD I   D
Sbjct: 360 LNACSMLQVGSATAFVLEQAMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPD 419

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN----FASRTGNVYFGK 333
           V+SWN++ + Y  +    +AL LF RM L   RPS+ +F+  L     +  +T +   GK
Sbjct: 420 VVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASA-IGK 478

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC--NSLMTSLL 391
           +I   + + G + G   V +A  +MY KC  +  + AVFE       +C   NS++ +  
Sbjct: 479 RIQSLLEEAGLE-GDTAVANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYG 537

Query: 392 HSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           H G  K+A E+F  M  E  +  ++VT    L A +   S   G  R +H   + +GFES
Sbjct: 538 HHGLGKEAFELFQAMEAEKLVKPNKVTFVAVLDASTSRTSIAQG--REIHARVVSNGFES 595

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEV 508
           +  +  +L++ Y++CG ++ +  +F+K  S   +V+ +TS++ GY++ G    AL +   
Sbjct: 596 DTVIQNALLNMYAKCGSLDDAQAIFDKSSSNQEDVIAWTSLIAGYAQYGQAERALKLFWT 655

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M Q+G+ P+ VTF+  L  CNH G +++G  + + M   +GI    +H+SC++D+LGR G
Sbjct: 656 MQQQGVRPNHVTFISALTACNHGGKLEQGCELLSGMTPDHGILPASKHFSCIVDLLGRCG 715

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
            LD+AE+LL++T    D + W +LL +C+       G R A  +M+L+P   + Y  +++
Sbjct: 716 RLDEAEKLLERT-SQADVITWMALLDACKNSKELERGERCAERIMQLDPEVASSYIVLAS 774

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            Y+  G +  +  IR+T L + +  D G S +EVN
Sbjct: 775 MYAAAGRWNEAATIRKTMLDKGIRADPGCSAVEVN 809



 Score =  178 bits (452), Expect = 7e-42,   Method: Compositional matrix adjust.
 Identities = 137/525 (26%), Positives = 252/525 (48%), Gaps = 34/525 (6%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLF 168
           ST+  +L  C       +G ++H  +LS    L  + ++ S L+ ++ + G    A  L 
Sbjct: 44  STYGCLLQACGRLRALKQGQRLHAHILSRRIDLHNHSFLASDLIVMHAKCGNLAEAEALA 103

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D     ++ +   M+RA+ E  RPD+ + ++++M+   V PN  +   +V  CS    L 
Sbjct: 104 DRFA--SVYSCTAMIRAWMEHGRPDKAMELFDRME---VRPNCHALIALVNACSCLGNLA 158

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIV 285
            G+++HS +    + + N  + NAL+  YS CGSLI+AK++FD +P     DV++WN+++
Sbjct: 159 AGRRIHSQISDRDF-EENSVLGNALISMYSKCGSLIDAKQAFDRLPRASKRDVVTWNAMI 217

Query: 286 SIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFG--KQIHGYVTKL 342
           S +       +AL+LF  M       P+  +FV  L+     G +     + IHG +   
Sbjct: 218 SAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLEDVRAIHGRIVGA 277

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVF----ESAPGRSLECCNSLMTSLLHSGNIKD 398
           G +     V++AL D YGK   ++ +  VF    +  P  SL  C++++++   +G  ++
Sbjct: 278 GIER-EAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAMISACWQNGWPQE 336

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           ++ +F  M  EG     VTL + L A S+    +  +  L     + S    N+ +  +L
Sbjct: 337 SLRLFFAMNLEGTKPSGVTLVSVLNACSMLQVGSATAFVLEQAMEVVSATRDNV-LGTTL 395

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y+R   +  +   F+ I SP+VV + ++   Y ++   REAL + E M+  G+ P  
Sbjct: 396 LTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHRSREALVLFERMLLEGVRPSV 455

Query: 519 VTFLCVLAGC------NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
            TF+  L  C        S + K  Q    S+    G++ D    +  ++M  + G L  
Sbjct: 456 ATFITALTACAAYPPQTASAIGKRIQ----SLLEEAGLEGDTAVANATLNMYAKCGSLAD 511

Query: 573 AEELLQQ-TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           A  + ++ +P   DC+ W+S+L +   HG   +G+    +   +E
Sbjct: 512 ARAVFERISPARRDCITWNSMLAAYGHHG---LGKEAFELFQAME 553



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 139/563 (24%), Positives = 264/563 (46%), Gaps = 40/563 (7%)

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            K G+L  A+ L D   +  + +   +I    +   P +A+ L+D M    ++ +     
Sbjct: 91  AKCGNLAEAEALADRFAS--VYSCTAMIRAWMEHGRPDKAMELFDRM---EVRPNCHALI 145

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-- 172
           ++++ CS  G    G +IH ++    F  N  +G+ L+ +Y + G  + A   FD LP  
Sbjct: 146 ALVNACSCLGNLAAGRRIHSQISDRDFEENSVLGNALISMYSKCGSLIDAKQAFDRLPRA 205

Query: 173 -ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGC-SIGML-LD 228
            +R++ TWN M+ AF       E L+++  M  +G   PN ++F  ++  C   G+L L+
Sbjct: 206 SKRDVVTWNAMISAFLRNGSAREALQLFRDMDRDGAPPPNSVTFVSVLDSCVEAGLLSLE 265

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF----DFIPVDDVISWNSI 284
           + + +H  ++  G ++   FV  ALVD Y   GSL +A + F    D  P   +++ +++
Sbjct: 266 DVRAIHGRIVGAG-IEREAFVRTALVDSYGKLGSLDDAWEVFLRKGDEEPSTSLVTCSAM 324

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S         ++L LFF M L   +PS  + V  LN  S         Q+ G  T    
Sbjct: 325 ISACWQNGWPQESLRLFFAMNLEGTKPSGVTLVSVLNACSML-------QV-GSATAFVL 376

Query: 345 DHGSVHVQSALTD---------MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           +  ++ V SA  D          Y + N +  + A F++     +   N++  + L    
Sbjct: 377 EQ-AMEVVSATRDNVLGTTLLTTYARSNDLPRARATFDAIQSPDVVSWNAMAAAYLQHHR 435

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC-RLLHCCAIKSGFESNIAV 454
            ++A+ +F  M+ EG+     T  T L A +        +  + +     ++G E + AV
Sbjct: 436 SREALVLFERMLLEGVRPSVATFITALTACAAYPPQTASAIGKRIQSLLEEAGLEGDTAV 495

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT--SIMNGYSRNGMGREALDMLEVMIQR 512
           + + ++ Y++CG +  +  VFE+I      C T  S++  Y  +G+G+EA ++ + M   
Sbjct: 496 ANATLNMYAKCGSLADARAVFERISPARRDCITWNSMLAAYGHHGLGKEAFELFQAMEAE 555

Query: 513 GLI-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            L+ P+KVTF+ VL        + +G+ +   + S  G ++D    + +++M  + G LD
Sbjct: 556 KLVKPNKVTFVAVLDASTSRTSIAQGREIHARVVS-NGFESDTVIQNALLNMYAKCGSLD 614

Query: 572 KAEELLQQTPGGG-DCMMWSSLL 593
            A+ +  ++     D + W+SL+
Sbjct: 615 DAQAIFDKSSSNQEDVIAWTSLI 637


>gi|359489786|ref|XP_002271725.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Vitis vinifera]
          Length = 852

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 191/616 (31%), Positives = 313/616 (50%), Gaps = 53/616 (8%)

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +N LI         +  L LY  M   G +    TF  VL  C     +  G  +H  V 
Sbjct: 94  WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 153

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER---NLATWNLMLRAFCELSRPDE 194
           + GF  N+++G+ LV +Y R G    A  +FDE+ ER   +L +WN ++ A+ +      
Sbjct: 154 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 213

Query: 195 VLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
            ++M+ +M  + G+ P+ +S   ++  C+       GKQ+H + ++ G  + ++FV NA+
Sbjct: 214 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE-DVFVGNAV 272

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNS------------------------------ 283
           VD Y+ CG + EA K F+ + V DV+SWN+                              
Sbjct: 273 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 332

Query: 284 -----IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
                +++ YA   L F+AL++F +M+LC   P++ + V  L+  +  G +  GK+ H +
Sbjct: 333 VTWSAVIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCH 392

Query: 339 VTK--LGFDHGS----VHVQSALTDMYGKCNVIESSVAVFESAP--GRSLECCNSLMTSL 390
             K  L  D       + V +AL DMY KC   +++ A+F+  P   RS+     L+   
Sbjct: 393 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 452

Query: 391 LHSGNIKDAVEMFGFMV--DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
              G   +A+E+F  M+  D  +  +  T+S  L A +   +   G  R +H   +++ F
Sbjct: 453 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG--RQIHAYVLRNRF 510

Query: 449 ESNIA-VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           ES +  V+  L+D YS+ G ++ +  VF+ +   N V +TS+M GY  +G G EAL +  
Sbjct: 511 ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFY 570

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M + GL+PD VTF+ VL  C+HSGMV +G   FN M   +G+    +HY+CM+D+L RA
Sbjct: 571 EMQKVGLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRA 630

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G LD+A EL++  P      +W +LL +CRV+ N  +G   AN L+ELE  +   Y+ +S
Sbjct: 631 GRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLS 690

Query: 628 NFYSEIGEFEVSMQIR 643
           N Y+    ++   +IR
Sbjct: 691 NIYANARCWKDVARIR 706



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 130/521 (24%), Positives = 242/521 (46%), Gaps = 58/521 (11%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYL 97
           + N++  N  +  + + G   +A+++FDEM  R   D+V++N +++   +     +A+ +
Sbjct: 158 EWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKM 217

Query: 98  YDEMVSH-GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           ++ M    GI+  A +  +VL  C++ G ++ G Q+H   L  G   ++++G+ +VD+Y 
Sbjct: 218 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 277

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE----------- 205
           + G    A  +F+ +  +++ +WN M+  + ++ R D+ L ++ K++ E           
Sbjct: 278 KCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSA 337

Query: 206 ------------------------GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
                                   G EPN ++   ++ GC++   L  GK+ H H IK  
Sbjct: 338 VIAGYAQRGLGFEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIK-- 395

Query: 242 WV---DVN-----IFVANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADY 291
           W+   D N     + V NAL+D YS C S   A+  FD IP  D  V++W  ++   A +
Sbjct: 396 WILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQH 455

Query: 292 DLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
               +ALELF +M        P+  +    L   +R G + FG+QIH YV +  F+   +
Sbjct: 456 GEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAML 515

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V + L DMY K   ++++  VF++   R+     SLMT     G  ++A+++F  M   
Sbjct: 516 FVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKV 575

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+  D VT    L A S S   + G     +      G          ++D  SR G ++
Sbjct: 576 GLVPDGVTFVVVLYACSHSGMVDQG-INYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 634

Query: 470 LSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
            + ++   +P  P    + ++++    Y+   +G  A + L
Sbjct: 635 EAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQL 675



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/455 (21%), Positives = 201/455 (44%), Gaps = 52/455 (11%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P   ++  + P C S+   S    +  Y   +    +++  N  +D + K G +  A K+
Sbjct: 229 PDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKV 288

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV---------- 116
           F+ M  +D+V++N +++G  +      AL L++++    I+ +  T+S+V          
Sbjct: 289 FERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLG 348

Query: 117 -------------------------LSVCSNAGFYTEGIQIHCRVLSLGFGLN------- 144
                                    LS C+ AG    G + HC  +     L+       
Sbjct: 349 FEALDVFRQMRLCGSEPNVVTLVSLLSGCALAGTLLHGKETHCHAIKWILNLDENDPGDD 408

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLATWNLMLRAFCELSRPDEVLRMYNKM 202
           L + + L+D+Y +      A  +FD +P  +R++ TW +++    +    +E L ++++M
Sbjct: 409 LMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM 468

Query: 203 KAEG--VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
                 V PN  +    +  C+    L  G+Q+H++V++  +    +FVAN L+D YS  
Sbjct: 469 LQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKS 528

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
           G +  A+  FD +   + +SW S+++ Y  +    +AL++F+ MQ     P   +FV  L
Sbjct: 529 GDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVGLVPDGVTFVVVL 588

Query: 321 NFASRTGNVYFG-KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
              S +G V  G    +G     G   G+ H  + + D+  +   ++ ++ +    P   
Sbjct: 589 YACSHSGMVDQGINYFNGMNKDFGVVPGAEHY-ACMVDLLSRAGRLDEAMELIRGMP--- 644

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           ++   ++  +LL +  +   VE+  +  ++ + L+
Sbjct: 645 MKPTPAVWVALLSACRVYANVELGEYAANQLLELE 679



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 77/272 (28%), Positives = 138/272 (50%), Gaps = 7/272 (2%)

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V  WN ++        + D L+L+ RMQ    RP   +F   L       +   G  +H 
Sbjct: 91  VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 150

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS---LECCNSLMTSLLHSG 394
            V   GF+  +V V + L  MYG+C   E++  VF+    R    L   NS++ + +  G
Sbjct: 151 VVFASGFEW-NVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 209

Query: 395 NIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           +   A++MF  M ++ GI  D V+L   L A +   + + G  + +H  A++SG   ++ 
Sbjct: 210 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG--KQVHGYALRSGLFEDVF 267

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V  +++D Y++CG +E +++VFE++   +VV + +++ GYS+ G   +AL + E + +  
Sbjct: 268 VGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEK 327

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +  + VT+  V+AG    G+  E   VF  M+
Sbjct: 328 IELNVVTWSAVIAGYAQRGLGFEALDVFRQMR 359


>gi|15236277|ref|NP_195239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75098809|sp|O49619.1|PP350_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g35130, chloroplastic; Flags: Precursor
 gi|2924523|emb|CAA17777.1| putative protein [Arabidopsis thaliana]
 gi|7270464|emb|CAB80230.1| putative protein [Arabidopsis thaliana]
 gi|332661071|gb|AEE86471.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 804

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 186/638 (29%), Positives = 330/638 (51%), Gaps = 15/638 (2%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CG 86
           +L D Y +   Q+N  +  R +  F  S  +  A +LFDEM   D   +N++I G   CG
Sbjct: 51  VLRDRY-KVTKQVNDPALTRALRGFADSRLMEDALQLFDEMNKADAFLWNVMIKGFTSCG 109

Query: 87  KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY 146
            +    +A+  Y  MV  G+K    T+  V+   +      EG +IH  V+ LGF  ++Y
Sbjct: 110 LY---IEAVQFYSRMVFAGVKADTFTYPFVIKSVAGISSLEEGKKIHAMVIKLGFVSDVY 166

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
           + + L+ LYM++G +  A  +F+E+PER++ +WN M+  +  L      L ++ +M   G
Sbjct: 167 VCNSLISLYMKLGCAWDAEKVFEEMPERDIVSWNSMISGYLALGDGFSSLMLFKEMLKCG 226

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
            +P+  S    +  CS       GK++H H ++      ++ V  +++D YS  G +  A
Sbjct: 227 FKPDRFSTMSALGACSHVYSPKMGKEIHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYA 286

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASR 325
           ++ F+ +   ++++WN ++  YA    + DA   F +M +    +P + + +  L  ++ 
Sbjct: 287 ERIFNGMIQRNIVAWNVMIGCYARNGRVTDAFLCFQKMSEQNGLQPDVITSINLLPASA- 345

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  G+ IHGY  + GF    V +++AL DMYG+C  ++S+  +F+    +++   NS
Sbjct: 346 ---ILEGRTIHGYAMRRGFLPHMV-LETALIDMYGECGQLKSAEVIFDRMAEKNVISWNS 401

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++ + + +G    A+E+F  + D  +  D  T+++ L A + S S + G  R +H   +K
Sbjct: 402 IIAAYVQNGKNYSALELFQELWDSSLVPDSTTIASILPAYAESLSLSEG--REIHAYIVK 459

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           S + SN  +  SL+  Y+ CG +E + + F  I   +VV + SI+  Y+ +G GR ++ +
Sbjct: 460 SRYWSNTIILNSLVHMYAMCGDLEDARKCFNHILLKDVVSWNSIIMAYAVHGFGRISVWL 519

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              MI   + P+K TF  +LA C+ SGMV EG   F SMK  YGID   +HY CM+D++G
Sbjct: 520 FSEMIASRVNPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGCMLDLIG 579

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           R G    A+  L++ P      +W SLL + R H +  I    A  + ++E  +   Y  
Sbjct: 580 RTGNFSAAKRFLEEMPFVPTARIWGSLLNASRNHKDITIAEFAAEQIFKMEHDNTGCYVL 639

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           + N Y+E G +E   +I+    ++ ++R    S +E  
Sbjct: 640 LLNMYAEAGRWEDVNRIKLLMESKGISRTSSRSTVEAK 677


>gi|19697432|gb|AAL93067.1|AC093180_14 hypothetical protein [Oryza sativa Japonica Group]
          Length = 1012

 Score =  297 bits (761), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 181/620 (29%), Positives = 328/620 (52%), Gaps = 18/620 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++ +N  ++ + K G L SA++LFD MP R+MV++  L+    +    + A  L+  
Sbjct: 93  RLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152

Query: 101 MV--SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +    H + +   T    L++  +A     G+  H     LG   N ++GS L+D Y   
Sbjct: 153 LRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGV--HSCAWKLGHDHNAFVGSGLIDAYSLC 210

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A  +F+ +  ++   W  M+  + E   P+   R+++KM+  G +PN  +   ++
Sbjct: 211 SLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVL 270

Query: 219 RG--CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +   C   ++L  GK +H   IK    D    V  AL+D Y+ CG + +A+ +F+ IP D
Sbjct: 271 KAAVCLPSVVL--GKGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DVI  + ++S YA  +    A ELF R+      P+  S    L   +    + FGKQIH
Sbjct: 328 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIH 387

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +  K+G +   + V +AL D Y KCN ++SS+ +F S    +    N+++     SG  
Sbjct: 388 NHAIKIGHE-SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLG 446

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++A+ +F  M    +   +VT S+ L+A   +++A++     +HC   KS F ++  +  
Sbjct: 447 EEALSVFCEMQAAQMPCTQVTYSSVLRA--CASTASIRHAGQIHCSIEKSTFNNDTVIGN 504

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+D Y++CG+I  + +VF+ +   +++ + +I++GY+ +G   +AL++ + M +  +  
Sbjct: 505 SLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVES 564

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + +TF+ +L+ C+ +G+V  G  +F+SM+  +GI    +HY+C++ +LGRAG L+ A + 
Sbjct: 565 NDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQF 624

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +   P     M+W +LL SC +H N  +GR  A  ++E+EP D   Y  +SN Y+  G  
Sbjct: 625 IGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSL 684

Query: 637 EVSMQIRETALARKLTRDIG 656
           +      + AL RK  R+IG
Sbjct: 685 D------QVALLRKSMRNIG 698


>gi|224085073|ref|XP_002307479.1| predicted protein [Populus trichocarpa]
 gi|222856928|gb|EEE94475.1| predicted protein [Populus trichocarpa]
          Length = 1026

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 180/654 (27%), Positives = 345/654 (52%), Gaps = 7/654 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+ ++     S+  L   LL+ +   +     N+Y  +  +  + K G + +AKK+FD +
Sbjct: 329 TLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTL 388

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +++V +N ++ G  +  +  + + L+  M S G      T+SS+LS C+   +   G 
Sbjct: 389 NEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLGH 448

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  ++   F  NL++G+ LVD+Y + G    A   F+ +  R+  +WN+++  + +  
Sbjct: 449 QLHSVIIKNKFASNLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQEE 508

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E   ++ +M   G+ P+ +S   ++  C+    L++GKQ+H   +K G  +  ++  
Sbjct: 509 DEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTG-QETKLYSG 567

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           ++L+D Y+ CG++  A K    +P   V+S N++++ YA  +L   A+ LF  M +    
Sbjct: 568 SSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQINLE-QAVNLFRDMLVEGIN 626

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY-GKCNVIESSV 369
            +  +F   L+       +  G+QIH  + K+G       +  +L  MY       ++SV
Sbjct: 627 STEITFASLLDACHEQQKLNLGRQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTTDASV 686

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
              E +  +S     ++++ L  +     A++++  M    +  D+ T  + L+A +V +
Sbjct: 687 LFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRACAVVS 746

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTS 488
           S   G+    H     +GF+S+   S +L+D Y++CG ++ S QVF+++    +V+ + S
Sbjct: 747 SIKDGT--ETHSLIFHTGFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKKDVISWNS 804

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ G+++NG   +AL + + M Q  + PD VTFL VL  C+HSG V EG+L+F+ M ++Y
Sbjct: 805 MIVGFAKNGYAEDALRVFDEMKQSHVTPDDVTFLGVLTACSHSGRVSEGRLIFDMMVNLY 864

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           G+     H +CM+D+LGR G L +AEE + +     D  +W+++L +CR+HG++I G++ 
Sbjct: 865 GMQPRADHCACMVDLLGRWGSLKEAEEFINKLNFEPDAKVWATMLGACRIHGDDIRGQQA 924

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           A  L+ELEP + + Y  +SN Y+  G ++    +R     + + +  G S I V
Sbjct: 925 AEKLIELEPQNSSPYVLLSNIYAASGNWDEVNTLRREMREKGVKKLPGCSWIVV 978



 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 167/549 (30%), Positives = 279/549 (50%), Gaps = 16/549 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I+ +V  G L++A  LF  MP R++V +NL+ISG  K  +  +A+  +  M   GIK + 
Sbjct: 268 INAYVDLGRLDNASDLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTR 327

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           ST  SVLS  ++      G+ +H   L  G   N+Y+GS LV +Y + G    A  +FD 
Sbjct: 328 STLGSVLSAIASLAALDFGLLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDT 387

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           L E+N+  WN ML  + +    +EV+ ++  MK+ G  P+  ++  ++  C+    LD G
Sbjct: 388 LNEQNVVLWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSACACLKYLDLG 447

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
            QLHS +IK  +   N+FV NALVD Y+  G+L +A++ F+ I   D +SWN I+  Y  
Sbjct: 448 HQLHSVIIKNKFAS-NLFVGNALVDMYAKSGALEDARQQFELIRNRDNVSWNVIIVGYVQ 506

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            +   +A  LF RM L    P   S    L+  +    +  GKQ+H    K G     ++
Sbjct: 507 EEDEVEAFHLFRRMNLLGILPDEVSLASILSACASVRGLEQGKQVHCLSVKTG-QETKLY 565

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
             S+L DMY KC  I+S+  +    P RS+   N+L+       N++ AV +F  M+ EG
Sbjct: 566 SGSSLIDMYAKCGAIDSAHKILACMPERSVVSMNALIAGYAQI-NLEQAVNLFRDMLVEG 624

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE-SNIAVSCSLMDAYSRCGHIE 469
           I   E+T ++ L A       NLG  R +H   +K G +  +  +  SL+  Y       
Sbjct: 625 INSTEITFASLLDACHEQQKLNLG--RQIHSLILKMGLQLDDEFLGVSLLGMYMNSLRTT 682

Query: 470 LSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
            +  +F +  +P + V +T++++G S+N     AL + + M    ++PD+ TF+  L  C
Sbjct: 683 DASVLFSEFSNPKSAVVWTAMISGLSQNDCSVVALQLYKEMRSCNVLPDQATFVSALRAC 742

Query: 529 NHSGMVKEG----QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
                +K+G     L+F++     G D+D    S ++DM  + G +  + ++ ++     
Sbjct: 743 AVVSSIKDGTETHSLIFHT-----GFDSDELTSSALVDMYAKCGDVKSSMQVFKEMSRKK 797

Query: 585 DCMMWSSLL 593
           D + W+S++
Sbjct: 798 DVISWNSMI 806



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 132/534 (24%), Positives = 250/534 (46%), Gaps = 40/534 (7%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +D + K   ++ A++ F ++  +D++ +N ++S   K   P   +  +  + + G+ 
Sbjct: 98  NVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQGFPHLVVKYFGLLWNSGVW 157

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TF+ VLS C+       G Q+HC V+ +GF    Y    L+ +Y +      A  +
Sbjct: 158 PNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFESISYCEGALIGMYAKCNFLTDARSI 217

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD   E +  +W  M+  + ++  P+E ++++ +M+  G EP+ ++F             
Sbjct: 218 FDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEMEKVGQEPDQVAF------------- 264

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
                              + V NA VD     G L  A   F  +P  +V++WN ++S 
Sbjct: 265 -------------------VTVINAYVDL----GRLDNASDLFSRMPNRNVVAWNLMISG 301

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +A      +A+E F  M+    + +  +    L+  +    + FG  +H    K G  H 
Sbjct: 302 HAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSAIASLAALDFGLLVHAEALKQGL-HS 360

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V+V S+L  MY KC  +E++  VF++   +++   N+++   + +G   + +E+F  M 
Sbjct: 361 NVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVVLWNAMLGGYVQNGYANEVMELFFNMK 420

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             G   D+ T S+ L A +     +LG    LH   IK+ F SN+ V  +L+D Y++ G 
Sbjct: 421 SCGFYPDDFTYSSILSACACLKYLDLG--HQLHSVIIKNKFASNLFVGNALVDMYAKSGA 478

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +E + Q FE I + + V +  I+ GY +     EA  +   M   G++PD+V+   +L+ 
Sbjct: 479 LEDARQQFELIRNRDNVSWNVIIVGYVQEEDEVEAFHLFRRMNLLGILPDEVSLASILSA 538

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           C     +++G+ V + +    G +      S +IDM  + G +D A ++L   P
Sbjct: 539 CASVRGLEQGKQV-HCLSVKTGQETKLYSGSSLIDMYAKCGAIDSAHKILACMP 591



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 106/404 (26%), Positives = 188/404 (46%), Gaps = 39/404 (9%)

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
           F T    IH + L LGF     +G+ +VDLY +      A   F +L ++++  WN +L 
Sbjct: 74  FSTTNKIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILS 133

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
              +   P  V++ +  +   GV PN  +F  ++  C+   ++  G+Q+H +V+K+G+  
Sbjct: 134 MHSKQGFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVKMGFES 193

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           ++ +   AL+  Y+ C  L +A+  FD     D +SW S++  Y    L  +A+++F  M
Sbjct: 194 IS-YCEGALIGMYAKCNFLTDARSIFDGAVELDKVSWTSMIGGYIKVGLPEEAVKVFQEM 252

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +   + P   +FV  +N                YV     D+ S                
Sbjct: 253 EKVGQEPDQVAFVTVIN---------------AYVDLGRLDNAS---------------- 281

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
                 +F   P R++   N +++     G   +A+E F  M   GI     TL + L A
Sbjct: 282 -----DLFSRMPNRNVVAWNLMISGHAKGGYGVEAIEFFQNMRKAGIKSTRSTLGSVLSA 336

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           ++  A+ + G   L+H  A+K G  SN+ V  SL+  Y++CG +E + +VF+ +   NVV
Sbjct: 337 IASLAALDFG--LLVHAEALKQGLHSNVYVGSSLVSMYAKCGKMEAAKKVFDTLNEQNVV 394

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
            + +++ GY +NG   E +++   M   G  PD  T+  +L+ C
Sbjct: 395 LWNAMLGGYVQNGYANEVMELFFNMKSCGFYPDDFTYSSILSAC 438



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 44/206 (21%), Positives = 94/206 (45%), Gaps = 11/206 (5%)

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           +++H  ++K GF S   +   ++D Y++C  ++ + + F+++   +++ + SI++ +S+ 
Sbjct: 79  KIIHAQSLKLGFWSKGVLGNVIVDLYAKCADVDYAERAFKQLEDKDILAWNSILSMHSKQ 138

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQ 555
           G     +    ++   G+ P++ TF  VL+ C    MVK G+ V  N +K   G ++   
Sbjct: 139 GFPHLVVKYFGLLWNSGVWPNEFTFAIVLSSCARLEMVKCGRQVHCNVVK--MGFESISY 196

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
               +I M  +   L  A  +        D + W+S++      G   +      +  E+
Sbjct: 197 CEGALIGMYAKCNFLTDARSIFDGAV-ELDKVSWTSMIGGYIKVG---LPEEAVKVFQEM 252

Query: 616 EPV----DFAVYSQVSNFYSEIGEFE 637
           E V    D   +  V N Y ++G  +
Sbjct: 253 EKVGQEPDQVAFVTVINAYVDLGRLD 278


>gi|357483095|ref|XP_003611834.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513169|gb|AES94792.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 985

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 195/665 (29%), Positives = 349/665 (52%), Gaps = 15/665 (2%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           T LL + R  T+L         L + LL  +    +    +Y  N  I  + + G L  A
Sbjct: 283 TLLLKKCRITTSLQEA----RQLHALLLTTTNASGSKSAFLY--NNIISMYSRCGSLEDA 336

Query: 64  KKLFDEMPARDMVTYNLLISGCGKF--RHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            ++FD+MP R  V+YN L++   +   +H   A  LY +M + G++ S  T +S+L   S
Sbjct: 337 HQVFDKMPQRTHVSYNALLAAYSRVSEQHCVYAFNLYTQMENMGLRPSNMTITSLLQAAS 396

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
             G    G+ +H + L  GF  ++ + + L+++Y        A  +F ++ ER+   WN 
Sbjct: 397 LHGDLLIGLLLHAKSLKFGFLNDICVQTSLLNMYSSCMDLSSAESVFCDMNERDNVAWNS 456

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++  + +  + ++ + ++ +M   G  P   +FC ++  CS       G+ +H+ VI +G
Sbjct: 457 LILGYLKNDKIEKGVYLFIEMMWVGFTPTVYTFCMILSACSRLKDYFSGRLIHARVI-VG 515

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            V  ++ + NALVD Y   G    A   F  +   D++SWNS++S Y + +    A+ LF
Sbjct: 516 NVSPDLHLQNALVDMYCNAGDTQTAYMIFSRMEKWDLVSWNSMISGYFENEDGEKAMNLF 575

Query: 302 FRMQ-LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
            +++ LC  +P   ++   ++         +GK +HG V K GF   SV V S L  MY 
Sbjct: 576 VQLKALCFPKPDDYTYAGIISATGAFPCFSYGKPLHGQVIKAGFVR-SVFVGSTLVSMYF 634

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           K    E+++ VF S PG+       ++T      +   A+  F  M  E   +D+  LS 
Sbjct: 635 KNQETEAALRVFCSIPGKDAILWTEMITGYSKMADGMGAIRCFSEMHHEVHEIDDYVLSG 694

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L   +  A    G   ++HC A K G++  ++VS SL+D Y++ G++E ++ VF ++  
Sbjct: 695 VLSVCAYLAILRQG--EIIHCYAYKLGYDVEMSVSGSLIDMYAKNGNLEAAYLVFSQVSH 752

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           P++ C+ S++ G+S +GM  +AL + E +I++GL+PD+VTFL +L+ C+HS +V++G+L+
Sbjct: 753 PDLKCWNSMLGGFSHHGMVDDALKLFEEIIKQGLVPDQVTFLSLLSACSHSRLVEQGKLL 812

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVH 599
           +N M S+ G+    +HYSCM+ +L RA +L++AEE++ ++P   D + +W +LL +C ++
Sbjct: 813 WNYMSSI-GLVPGPKHYSCMVTLLSRAALLEEAEEIINKSPYVEDNVELWRTLLSACVIN 871

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            N  +G R A  ++     D      +SN Y+  G ++   +IR       + ++ G S 
Sbjct: 872 KNLKVGVRAAEEVLRFNAEDGPTLILLSNLYAAAGRWDEVAEIRRNMKGLIMEKEPGLSW 931

Query: 660 IEVNS 664
           IE  +
Sbjct: 932 IEAKN 936


>gi|224122892|ref|XP_002318942.1| predicted protein [Populus trichocarpa]
 gi|222857318|gb|EEE94865.1| predicted protein [Populus trichocarpa]
          Length = 707

 Score =  297 bits (760), Expect = 1e-77,   Method: Compositional matrix adjust.
 Identities = 192/662 (29%), Positives = 332/662 (50%), Gaps = 9/662 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNI--YSSNRTIDDFVKSGHLNSAKK 65
           P+ R+   L         L    +L ++    P L+   Y +N  I  + K GHL+ AK 
Sbjct: 5   PQNRSFYNLLIQYADQKSLKKGQILHAHIIKIPYLSSCNYLANNLIKFYAKCGHLHGAKL 64

Query: 66  LFDEMPARDMVTYNLLISGCGK--FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS-N 122
           +F+ +  +++V+YN LI G      +     L L+  M+++ I   A TF  V +  + N
Sbjct: 65  VFENLKHKNVVSYNCLIHGLSHNGSKGSNFVLELFRRMIANNILPDAHTFPGVFTAAALN 124

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
            G   +  Q+H   +      ++++GS LV+ Y ++G    A  LFD +PERNL +W  M
Sbjct: 125 LGCNFDARQVHVLGIKTASIDDVFVGSSLVNFYCKVGCVFEARKLFDRMPERNLVSWTTM 184

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  +       E L ++  M+      N   F  ++        +D GKQ+H  V+K G 
Sbjct: 185 ISGYASKQMAKEALGVFGLMRLVEGNLNEFVFTSVLSALVCPEFVDSGKQVHCVVVKNGV 244

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           ++  + V NALV  Y+ CG+L  +   F+     + I+W+++++ Y+       AL+LF 
Sbjct: 245 LEF-VSVLNALVTMYAKCGNLNYSLMLFEMCSDKNAITWSALITGYSQAGDSHKALKLFS 303

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           +M      PS  + V  L   S    +  GKQ HGY+ K G++   ++  +AL DMY K 
Sbjct: 304 KMHYAGFVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYE-TQIYTATALVDMYAKF 362

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
                +   F+      L    S++   + +G  ++A+ M+G M    I  +E+T+++ L
Sbjct: 363 GFTGDARKGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVL 422

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           KA S  A+   G  + +H   IK G    +++  +L   Y++CG +E    +F ++   +
Sbjct: 423 KACSNLAALEQG--KQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRD 480

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V + ++++G S+NG GREAL++ E M   G  PD +TF+ VL+ C+H G+VK G   FN
Sbjct: 481 IVSWNAMISGLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACSHMGIVKRGWAYFN 540

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            M   + +    +HY+CM+D+L RAG L++A+E ++         +W  LL +CR H N 
Sbjct: 541 MMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIIDHGMCLWRILLPACRNHCNY 600

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            +G      LMEL   + + Y  +S+ Y+ +G     +++R     R + ++ G S IE+
Sbjct: 601 ELGAYAGEKLMELGSRESSAYVLLSSIYTAMGRLADVVRVRRMMKVRGVRKETGCSWIEL 660

Query: 663 NS 664
            S
Sbjct: 661 KS 662



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 124/283 (43%), Gaps = 23/283 (8%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
            +P   T+  +   C+ +  +        Y  +   +  IY++   +D + K G    A+
Sbjct: 310 FVPSEFTLVGVLKACSDVAAIEEGKQTHGYLLKSGYETQIYTATALVDMYAKFGFTGDAR 369

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K FD +   D+V +  +I+G  +    ++AL +Y  M    I  +  T +SVL  CSN  
Sbjct: 370 KGFDFLLEPDLVLWTSIIAGYVQNGKNEEALSMYGRMQMRKILPNELTMASVLKACSNLA 429

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
              +G QIH R +  G G  L I S L  +Y + G     + +F  + +R++ +WN M+ 
Sbjct: 430 ALEQGKQIHARTIKYGLGPELSIRSALSTMYAKCGSLEEGVLIFRRMLQRDIVSWNAMIS 489

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
              +     E L ++ +M+ EG +P+ ++F  ++  CS           H  ++K GW  
Sbjct: 490 GLSQNGHGREALELFEEMRLEGTKPDHITFVTVLSACS-----------HMGIVKRGWAY 538

Query: 245 VNIFVAN-----------ALVDFYSACGSLIEAKKSFDFIPVD 276
            N+                +VD  S  G L EAK+  +   +D
Sbjct: 539 FNMMFDEFCLVPRVEHYACMVDVLSRAGKLNEAKEFIESAIID 581


>gi|225464633|ref|XP_002274427.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic [Vitis vinifera]
 gi|302143764|emb|CBI22625.3| unnamed protein product [Vitis vinifera]
          Length = 880

 Score =  297 bits (760), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 193/667 (28%), Positives = 345/667 (51%), Gaps = 15/667 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-----SSLLLDSYCQPNPQLNIYSSNRTIDDFV 55
           ML +   P   T++T   +C+++   +      +L+  S    NP L     +  ID + 
Sbjct: 107 MLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPVL----GSALIDFYS 162

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K G    A ++F+ M   D+V++ +++S   +     QAL LY  M+  G+  +  TF  
Sbjct: 163 KCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTGVAPNEFTFVK 222

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +L+  S  G    G  +H  ++     LNL + + LVD+Y +      A+ +     E +
Sbjct: 223 LLAASSFLGL-NYGKLVHAHLMMWRIELNLVLKTALVDMYCKCQSIEDAVKVSKLTLEYD 281

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           +  W  ++  F +  +  E +  +++M+  GV PN  ++  ++  CS  + LD GKQ+HS
Sbjct: 282 VFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSSILALDLGKQIHS 341

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIE-AKKSFDFIPVDDVISWNSIVSIYADYDLI 294
            V+  G ++ ++ V N+LVD Y  C ++IE A ++F  I   +VISW S+++ ++++ L 
Sbjct: 342 RVVMAG-LENDVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWTSLIAGFSEHGLE 400

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +++++F  MQ    RP+  +    L       ++   +++HGY+ K   D+  V V +A
Sbjct: 401 EESIKVFGAMQGVGVRPNSFTLSTILGACGTIKSLTQTRKLHGYIIKNNADNDVV-VGNA 459

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L D Y    +++ +  V      R +    SL T +  +GN + A+ +   M  + + +D
Sbjct: 460 LVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALNIITHMNKDDVRMD 519

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
             +L++ L A +       G  + LHC ++KSG  S I+VS  L+D Y +CG I  +H+ 
Sbjct: 520 GFSLASFLSAAAGIPIMETG--KQLHCYSVKSGLGSWISVSNGLVDLYGKCGCIHDAHRS 577

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F +I  P+ V +  ++ G + NG    AL   E M   G+ PD++T L VL  C+H G+V
Sbjct: 578 FLEITEPDAVSWNGLIFGLASNGHVSSALSAFEDMRLAGVEPDQITCLLVLYACSHGGLV 637

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
             G   F SM+  +GI     HY C++D+LGRAG L++A  +++  P   D +++ +LL 
Sbjct: 638 DMGLDYFQSMREKHGIRPQLDHYVCLVDLLGRAGRLEEAMNVIETMPFKPDALIYKTLLG 697

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +C++HGN  +G  +A   +EL+P D A Y  ++N Y + G  E+  + R     R + ++
Sbjct: 698 ACKLHGNIPLGEHMARQGLELDPSDPAFYVLLANLYDDSGRSELGEKTRRMMRERGVRKN 757

Query: 655 IGHSLIE 661
            G S +E
Sbjct: 758 PGQSWME 764



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 158/571 (27%), Positives = 282/571 (49%), Gaps = 20/571 (3%)

Query: 33  DSYCQPNP------QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCG 86
           D  C  +P      Q +++ SN  +  + K   +  A++LFDEMP RD+ ++ +L+S  G
Sbjct: 33  DGICIHSPIIKMGFQEDMFLSNNLLSLYGKCFGVAEARQLFDEMPCRDVASWTMLMSAYG 92

Query: 87  KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY 146
           K  + ++AL L+D M+  G   +  T S+ L  CS    +  G +    V   GF  N  
Sbjct: 93  KIGNHEEALELFDSMLISGEYPNEFTLSTALRSCSALREFNHGTRFQALVTKSGFDSNPV 152

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
           +GS L+D Y + G +  A  +F+ +   ++ +W +M+ +F E     + L++Y++M   G
Sbjct: 153 LGSALIDFYSKCGCTQEAYRVFEYMNNGDIVSWTMMVSSFVEAGSWSQALQLYHRMIQTG 212

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIE 265
           V PN  +F  ++   S  + L+ GK +H+H++   W +++N+ +  ALVD Y  C S+ +
Sbjct: 213 VAPNEFTFVKLLAASSF-LGLNYGKLVHAHLMM--WRIELNLVLKTALVDMYCKCQSIED 269

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A K        DV  W +I+S +       +A+  F  M+     P+  ++   LN  S 
Sbjct: 270 AVKVSKLTLEYDVFLWTAIISGFTQSLKFREAITAFHEMETSGVVPNNFTYSGILNACSS 329

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC-NVIESSVAVFESAPGRSLECCN 384
              +  GKQIH  V   G ++  V V ++L DMY KC N+IE +V  F      ++    
Sbjct: 330 ILALDLGKQIHSRVVMAGLEN-DVSVGNSLVDMYMKCSNMIEDAVRAFRGIASPNVISWT 388

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           SL+      G  ++++++FG M   G+  +  TLST L A     S  L   R LH   I
Sbjct: 389 SLIAGFSEHGLEEESIKVFGAMQGVGVRPNSFTLSTILGACGTIKS--LTQTRKLHGYII 446

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           K+  ++++ V  +L+DAY+  G ++ +  V   +   +V+ +TS+    ++ G    AL+
Sbjct: 447 KNNADNDVVVGNALVDAYAGLGMVDDAWHVTSMMKHRDVITYTSLATRINQTGNHEMALN 506

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDM 563
           ++  M +  +  D  +    L+      +++ G QL   S+KS  G+ +     + ++D+
Sbjct: 507 IITHMNKDDVRMDGFSLASFLSAAAGIPIMETGKQLHCYSVKS--GLGSWISVSNGLVDL 564

Query: 564 LGRAG-ILDKAEELLQQTPGGGDCMMWSSLL 593
            G+ G I D     L+ T    D + W+ L+
Sbjct: 565 YGKCGCIHDAHRSFLEITE--PDAVSWNGLI 593


>gi|356558562|ref|XP_003547574.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g21300-like [Glycine max]
          Length = 846

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 178/623 (28%), Positives = 333/623 (53%), Gaps = 4/623 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            ++++  +  I  +  +G++  A+++FDE+P RD + +N+++ G  K      A+  +  
Sbjct: 177 HVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCG 236

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M +     ++ T++ +LS+C+  G +  G Q+H  V+  GF  +  + + LV +Y + G 
Sbjct: 237 MRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDPQVANTLVAMYSKCGN 296

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LF+ +P+ +  TWN ++  + +    DE   ++N M + GV+P+ ++F   +  
Sbjct: 297 LFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPS 356

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                 L   K++HS++++   V  ++++ +AL+D Y   G +  A+K F    + DV  
Sbjct: 357 ILESGSLRHCKEVHSYIVRHR-VPFDVYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAV 415

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
             +++S Y  + L  DA+  F  +      P+  +    L   +    +  GK++H  + 
Sbjct: 416 CTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAALAALKLGKELHCDIL 475

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K   ++  V+V SA+TDMY KC  ++ +   F         C NS+++S   +G  + AV
Sbjct: 476 KKQLEN-IVNVGSAITDMYAKCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAV 534

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  M   G   D V+LS+ L + +   +   G  + +H   I++ F S+  V+ +L+D
Sbjct: 535 DLFRQMGMSGAKFDSVSLSSALSSAANLPALYYG--KEMHGYVIRNAFSSDTFVASALID 592

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+CG + L+  VF  +   N V + SI+  Y  +G  RE LD+   M++ G+ PD VT
Sbjct: 593 MYSKCGKLALARCVFNLMAGKNEVSWNSIIAAYGNHGCARECLDLFHEMLRAGVHPDHVT 652

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL +++ C H+G+V EG   F+ M   YGI A  +HY+CM+D+ GRAG L +A + ++  
Sbjct: 653 FLVIISACGHAGLVGEGIHYFHCMTREYGIGARMEHYACMVDLYGRAGRLHEAFDAIKSM 712

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D  +W +LL +CR+HGN  + +  +  L+EL+P +   Y  +SN +++ GE+   +
Sbjct: 713 PFTPDAGVWGTLLGACRLHGNVELAKLASRHLLELDPKNSGYYVLLSNVHADAGEWGSVL 772

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
           ++R     + + +  G+S I+VN
Sbjct: 773 KVRRLMKEKGVQKIPGYSWIDVN 795



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 149/577 (25%), Positives = 281/577 (48%), Gaps = 25/577 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           S+R +  +V  G ++    LF  +   + + +N +I G         AL  Y +M+   +
Sbjct: 82  SSRVLGLYVLCGRISDGGNLFFGLELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNV 141

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                TF  V+  C         + +H    SLGF ++L++GS L+ LY   G    A  
Sbjct: 142 SPDKYTFPYVIKACGGLNNVPLCMVVHNTARSLGFHVDLFVGSALIKLYADNGYICDARR 201

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FDELP+R+   WN+ML  + +    +  +  +  M+      N +++  ++  C+    
Sbjct: 202 VFDELPQRDTILWNVMLHGYVKSGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGK 261

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
              G Q+H  VI  G+ + +  VAN LV  YS CG+L +A+K F+ +P  D ++WN +++
Sbjct: 262 FCLGTQVHGLVIGSGF-EFDPQVANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIA 320

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT--KLGF 344
            Y       +A  LF  M     +P   +F  FL     +G++   K++H Y+   ++ F
Sbjct: 321 GYVQNGFTDEAAPLFNAMISAGVKPDSVTFASFLPSILESGSLRHCKEVHSYIVRHRVPF 380

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS-LLHSGNIKDAVEMF 403
           D   V+++SAL D+Y K   +E +  +F+      +  C ++++  +LH  NI DA+  F
Sbjct: 381 D---VYLKSALIDIYFKGGDVEMARKIFQQNTLVDVAVCTAMISGYVLHGLNI-DAINTF 436

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
            +++ EG+  + +T+++ L A +  A+  LG  + LHC  +K   E+ + V  ++ D Y+
Sbjct: 437 RWLIQEGMVPNSLTMASVLPACAALAALKLG--KELHCDILKKQLENIVNVGSAITDMYA 494

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG ++L+++ F ++   + +C+ S+++ +S+NG    A+D+   M   G   D V+   
Sbjct: 495 KCGRLDLAYEFFRRMSETDSICWNSMISSFSQNGKPEMAVDLFRQMGMSGAKFDSVSLSS 554

Query: 524 VLAGCN-----HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            L+        + G    G ++ N+  S      D    S +IDM  + G L  A  +  
Sbjct: 555 ALSSAANLPALYYGKEMHGYVIRNAFSS------DTFVASALIDMYSKCGKLALARCVFN 608

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
              G  + + W+S++ +   +GN    R   ++  E+
Sbjct: 609 LMAGKNE-VSWNSIIAA---YGNHGCARECLDLFHEM 641



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 231/495 (46%), Gaps = 16/495 (3%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +   S+   CS+A    +  Q+H +++  G      + S ++ LY+  G      +LF  
Sbjct: 45  TQLESLFRACSDASVVQQARQVHTQIIVGGMSDVCALSSRVLGLYVLCGRISDGGNLFFG 104

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           L   N   WN M+R    L   D  L  Y KM    V P+  +F Y+++ C     +   
Sbjct: 105 LELCNALPWNWMIRGLYMLGWFDFALLFYFKMLGSNVSPDKYTFPYVIKACGGLNNVPLC 164

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +H+    LG+  V++FV +AL+  Y+  G + +A++ FD +P  D I WN ++  Y  
Sbjct: 165 MVVHNTARSLGF-HVDLFVGSALIKLYADNGYICDARRVFDELPQRDTILWNVMLHGYVK 223

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +A+  F  M+      +  ++   L+  +  G    G Q+HG V   GF+     
Sbjct: 224 SGDFNNAMGTFCGMRTSYSMVNSVTYTCILSICATRGKFCLGTQVHGLVIGSGFEFDP-Q 282

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V + L  MY KC  +  +  +F + P       N L+   + +G   +A  +F  M+  G
Sbjct: 283 VANTLVAMYSKCGNLFDARKLFNTMPQTDTVTWNGLIAGYVQNGFTDEAAPLFNAMISAG 342

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D VT ++ L   S+  S +L  C+ +H   ++     ++ +  +L+D Y + G +E+
Sbjct: 343 VKPDSVTFASFLP--SILESGSLRHCKEVHSYIVRHRVPFDVYLKSALIDIYFKGGDVEM 400

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + ++F++    +V   T++++GY  +G+  +A++    +IQ G++P+ +T   VL  C  
Sbjct: 401 ARKIFQQNTLVDVAVCTAMISGYVLHGLNIDAINTFRWLIQEGMVPNSLTMASVLPACAA 460

Query: 531 SGMVKEGQ-----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
              +K G+     ++   ++++  +       S + DM  + G LD A E  ++     D
Sbjct: 461 LAALKLGKELHCDILKKQLENIVNVG------SAITDMYAKCGRLDLAYEFFRRMS-ETD 513

Query: 586 CMMWSSLLRSCRVHG 600
            + W+S++ S   +G
Sbjct: 514 SICWNSMISSFSQNG 528


>gi|224126883|ref|XP_002319950.1| predicted protein [Populus trichocarpa]
 gi|222858326|gb|EEE95873.1| predicted protein [Populus trichocarpa]
          Length = 746

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 163/536 (30%), Positives = 295/536 (55%), Gaps = 11/536 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QI+ ++L  G     ++ + LV+    +G    A  LFD+ P+ ++  WN ++R +    
Sbjct: 93  QIYAKLLVTGLQYGGFLIAKLVNKASNIGEVSCARKLFDKFPDPDVFLWNAIVRCYSRHG 152

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                + MY +M+   V P+G SF  +++ CS    L+ G+++H  + + G+ + ++FV 
Sbjct: 153 FFGHAIEMYARMQVACVSPDGFSFPCVLKACSALPALEMGRRVHGQIFRHGF-ESDVFVQ 211

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           N LV  Y+ CG ++ A   F  +    ++SW SI+S YA      +AL +F  M+    R
Sbjct: 212 NGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMRKTNVR 271

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + V  L   +   ++  GK IHG V K+G +     +  +LT +Y KC  +  +  
Sbjct: 272 PDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLE-CEFDLLISLTSLYAKCGHVMVARL 330

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
            F      SL   N++++  + +G  ++A+E+F  M  + I  D +T+++     S++A 
Sbjct: 331 FFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTS-----SIAAC 385

Query: 431 ANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           A +GS    R +      S F +++ V+ SL+D Y++CG ++++  VF++IP  +VV ++
Sbjct: 386 AQIGSLELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVWS 445

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           ++M GY  +G GRE++ +   M Q G+ P+ VTF+ +L  C +SG+V+EG  +F+ M+  
Sbjct: 446 AMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD- 504

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           YGI+   QHY+C++D+LGRAG LD+A   +   P      +W +LL +C++H +  +G  
Sbjct: 505 YGIEPRHQHYACVVDLLGRAGHLDRAYNFVMNMPIEPGVSVWGALLSACKIHRHVTLGEY 564

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            A  L  L+P +   Y Q+SN Y+    ++   ++R     + LT+ +G+S+IE+N
Sbjct: 565 AAERLFSLDPYNTGHYVQLSNLYASSCLWDCVAKVRVLMREKGLTKHLGYSVIEIN 620



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/436 (23%), Positives = 206/436 (47%), Gaps = 5/436 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G ++ A+KLFD+ P  D+  +N ++    +      A+ +Y  M    +     +F  VL
Sbjct: 121 GEVSCARKLFDKFPDPDVFLWNAIVRCYSRHGFFGHAIEMYARMQVACVSPDGFSFPCVL 180

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             CS       G ++H ++   GF  ++++ + LV LY + G  VRA  +F  L +R + 
Sbjct: 181 KACSALPALEMGRRVHGQIFRHGFESDVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIV 240

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  ++  + +  +P E LR++++M+   V P+ ++   ++R  +    L+ GK +H  V
Sbjct: 241 SWTSIISGYAQNGQPIEALRIFSEMRKTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCV 300

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           IK+G ++    +  +L   Y+ CG ++ A+  F+ +    +I WN+++S Y       +A
Sbjct: 301 IKMG-LECEFDLLISLTSLYAKCGHVMVARLFFNQVENPSLIFWNAMISGYVKNGYAEEA 359

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           +ELF  M+    RP   +    +   ++ G++   + +  Y++   F    V V ++L D
Sbjct: 360 IELFRLMKSKNIRPDSITVTSSIAACAQIGSLELARWMDEYISMSEF-RNDVIVNTSLID 418

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
            Y KC  ++ +  VF+  P + +   +++M      G  ++++ +F  M   G+  ++VT
Sbjct: 419 TYAKCGSVDMARFVFDRIPDKDVVVWSAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVT 478

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A   S     G   L H      G E        ++D   R GH++ ++     
Sbjct: 479 FVGLLTACKNSGLVEEG-WDLFHRMR-DYGIEPRHQHYACVVDLLGRAGHLDRAYNFVMN 536

Query: 478 IP-SPNVVCFTSIMNG 492
           +P  P V  + ++++ 
Sbjct: 537 MPIEPGVSVWGALLSA 552



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 175/395 (44%), Gaps = 7/395 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  +  + K G +  A  +F  +  R +V++  +ISG  +   P +AL ++ EM 
Sbjct: 207 DVFVQNGLVALYAKCGEIVRANAVFGRLVDRTIVSWTSIISGYAQNGQPIEALRIFSEMR 266

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++       SVL   ++      G  IH  V+ +G      +   L  LY + G  +
Sbjct: 267 KTNVRPDWIALVSVLRAYTDVEDLEHGKSIHGCVIKMGLECEFDLLISLTSLYAKCGHVM 326

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F+++   +L  WN M+  + +    +E + ++  MK++ + P+ ++    +  C+
Sbjct: 327 VARLFFNQVENPSLIFWNAMISGYVKNGYAEEAIELFRLMKSKNIRPDSITVTSSIAACA 386

Query: 223 -IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
            IG L  E  +     I +     ++ V  +L+D Y+ CGS+  A+  FD IP  DV+ W
Sbjct: 387 QIGSL--ELARWMDEYISMSEFRNDVIVNTSLIDTYAKCGSVDMARFVFDRIPDKDVVVW 444

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++++  Y  +    +++ LF  M+     P+  +FV  L     +G V  G  +   +  
Sbjct: 445 SAMMVGYGLHGQGRESIILFHAMRQAGVSPNDVTFVGLLTACKNSGLVEEGWDLFHRMRD 504

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G +    H  + + D+ G+   ++ +     + P   +E   S+  +LL +  I   V 
Sbjct: 505 YGIEPRHQHY-ACVVDLLGRAGHLDRAYNFVMNMP---IEPGVSVWGALLSACKIHRHVT 560

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
           +  +  +    LD       ++  ++ AS+ L  C
Sbjct: 561 LGEYAAERLFSLDPYNTGHYVQLSNLYASSCLWDC 595


>gi|357461615|ref|XP_003601089.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355490137|gb|AES71340.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 745

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 190/659 (28%), Positives = 338/659 (51%), Gaps = 51/659 (7%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           L S ++   +C      +I+  N  I  + K   +  A+ +FDEMP R++V++  ++S  
Sbjct: 25  LHSHIIKSGFCN-----HIFILNNMISVYSKCSSIIDARNMFDEMPHRNIVSWTTMVSVL 79

Query: 86  GKFRHPKQALYLYDEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
                P +AL LY+EM+   I++     +S+VL  C        G  +H  +      ++
Sbjct: 80  TNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVELGKMVHYHIFQAKLDVD 139

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK--- 201
           + + + L+D+Y++ G    A  +F E+P +N  +WN ++  + +    D+ +++++K   
Sbjct: 140 IVLMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGYAKQGLIDDAMKLFDKMPE 199

Query: 202 ---------------------------MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
                                      M  +G++ +  +F  +++ C     L  G+++H
Sbjct: 200 PDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPSVLKACGCSDELMLGREIH 259

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-----WNSIVS--- 286
            ++IK G+ + + +  +AL+D YS+C  L EA K FD    +  +S     WNS++S   
Sbjct: 260 CYIIKSGF-ESSCYCISALIDMYSSCKLLSEATKIFDQYFRNSSVSESLALWNSMLSGHV 318

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           +  DY    +AL +   M     R    +F   L       N+    Q+HG+V   G++ 
Sbjct: 319 VNGDY---VEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLSLASQVHGFVITSGYEL 375

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V S L D+Y K   I +++ +FE  P + +   +SL+T     G+ K A  +F  M
Sbjct: 376 DCV-VGSILIDIYAKQGSINNALRLFERLPDKDVVAWSSLITGCARFGSDKLAFSLFMDM 434

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           +  G+ +D   +S  LKA S  AS   G  + +H   +K G+ES   V+ +L+D Y++CG
Sbjct: 435 IHLGLQIDHFVISIVLKACSSLASHQHG--KQVHSLCLKKGYESEGVVTTALIDMYAKCG 492

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            IE +  +F  +   + + +TSI+ G ++NG   EA+ +L  MI+ G  P+K+T L VL 
Sbjct: 493 DIEDALSLFGCLSEIDTMSWTSIIVGCAQNGRAEEAISLLHKMIESGTKPNKITILGVLT 552

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C HSG+V+E   VFNS+++ +G+    +HY+CM+D+LG+AG  ++A +L+ + P   D 
Sbjct: 553 ACRHSGLVEEAWDVFNSIETNHGLIPCPEHYNCMVDILGQAGRFEEAVKLISEMPFKPDK 612

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
            +WSSLL +C  + N  +   VA  L+   P D +VY  +SN Y+ +G ++   ++RET
Sbjct: 613 TIWSSLLGACGTYKNRDLANIVAEHLLATSPEDVSVYIMLSNVYAALGMWDSVSKVRET 671



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 122/428 (28%), Positives = 206/428 (48%), Gaps = 48/428 (11%)

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++F Y +R  SI       K LHSH+IK G+ + +IF+ N ++  YS C S+I+A+  FD
Sbjct: 8   IAFRYCIRFRSI----KNAKSLHSHIIKSGFCN-HIFILNNMISVYSKCSSIIDARNMFD 62

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR-KRPSIRSFVEFLNFASRTGNVY 330
            +P  +++SW ++VS+  +  +  +AL L+  M   + ++P+   +   L       NV 
Sbjct: 63  EMPHRNIVSWTTMVSVLTNSSMPHEALSLYNEMIESKIEQPNQFLYSAVLKACGLVRNVE 122

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            GK +H ++ +   D   V + +AL DMY KC  +  +  VF   P ++    N+L+   
Sbjct: 123 LGKMVHYHIFQAKLDVDIV-LMNALLDMYVKCGSLRDAQRVFCEIPCKNATSWNTLILGY 181

Query: 391 LHSGNIKDAVEMFGFMVD------------------------------EGIGLDEVTLST 420
              G I DA+++F  M +                              +G+ +DE T  +
Sbjct: 182 AKQGLIDDAMKLFDKMPEPDIVSWNSIIAGLVDNASSRALRFVSMMHGKGLKMDEFTFPS 241

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI-- 478
            LKA   S    LG  R +HC  IKSGFES+     +L+D YS C  +  + ++F++   
Sbjct: 242 VLKACGCSDELMLG--REIHCYIIKSGFESSCYCISALIDMYSSCKLLSEATKIFDQYFR 299

Query: 479 ---PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC-NHSGMV 534
               S ++  + S+++G+  NG   EAL M+  M + G+  D  TF  VL  C N   + 
Sbjct: 300 NSSVSESLALWNSMLSGHVVNGDYVEALSMISHMHRSGVRFDFYTFSIVLKICMNFDNLS 359

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
              Q+    + S Y +D      S +ID+  + G ++ A  L ++ P   D + WSSL+ 
Sbjct: 360 LASQVHGFVITSGYELDCVVG--SILIDIYAKQGSINNALRLFERLP-DKDVVAWSSLIT 416

Query: 595 SCRVHGNE 602
            C   G++
Sbjct: 417 GCARFGSD 424


>gi|357453021|ref|XP_003596787.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355485835|gb|AES67038.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 867

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 183/621 (29%), Positives = 334/621 (53%), Gaps = 20/621 (3%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY-----LYDEMVSHG 105
           +D ++K+ ++N  +++FDEM  R++V++  L++G     +    LY     L+ +M   G
Sbjct: 135 VDMYMKTENVNDGRRVFDEMGERNVVSWTSLLAG-----YSWNGLYGYVWELFCQMQYEG 189

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +  +  T S+V++   N G    G+Q+H  V+  GF   + + + L+ LY R+G    A 
Sbjct: 190 VLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKHGFEEAIPVFNSLISLYSRLGMLRDAR 249

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           D+FD++  R+  TWN M+  +    +  EV  ++NKM+  GV+P  ++F  +++ C+   
Sbjct: 250 DVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVKPTHMTFASVIKSCASLR 309

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSI 284
            L   K +    +K G+    I V  AL+   S C  + +A   F  +    +V+SW ++
Sbjct: 310 ELALVKLMQCKALKSGFTTDQI-VITALMVALSKCKEMDDALSLFSLMEEGKNVVSWTAM 368

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S          A+ LF +M+    +P+  ++   L          F  ++H  V K  +
Sbjct: 369 ISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILTVHYPV----FVSEMHAEVIKTNY 424

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +  S  V +AL D Y K      +V VFE    + L   ++++     +G  ++A ++F 
Sbjct: 425 ERSS-SVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLAGYAQTGETEEAAKLFH 483

Query: 405 FMVDEGIGLDEVTLSTTLKA-LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
            ++ EGI  +E T S+ + A  S +A+A  G  +  H  AIK    + + VS +L+  Y+
Sbjct: 484 QLIKEGIKPNEFTFSSVINACASPTAAAEQG--KQFHAYAIKMRLNNALCVSSALVTMYA 541

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           + G+I+ +H+VF++    ++V + S+++GYS++G  ++AL++ + M +R +  D VTF+ 
Sbjct: 542 KRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDEMQKRNMDVDAVTFIG 601

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           V+  C H+G+V++GQ  FNSM + + I+   +HYSCMID+  RAG+L+KA  ++ + P  
Sbjct: 602 VITACTHAGLVEKGQKYFNSMINDHHINPTMKHYSCMIDLYSRAGMLEKAMGIINEMPFP 661

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W +LL + RVH N  +G   A  L+ L+P D A Y  +SN Y+  G ++    +R
Sbjct: 662 PGATVWRTLLGAARVHRNVELGELAAEKLISLQPEDSAAYVLLSNMYAAAGNWQERTNVR 721

Query: 644 ETALARKLTRDIGHSLIEVNS 664
           +    RK+ ++ G+S IEV +
Sbjct: 722 KLMDKRKVKKEPGYSWIEVKN 742



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 135/543 (24%), Positives = 265/543 (48%), Gaps = 14/543 (2%)

Query: 63  AKKLFDEMPAR--DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           A  LFD++P R   +  +N L+    + +  K+AL L+  ++   ++   ST S V ++C
Sbjct: 44  AHNLFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNIC 103

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           + +     G Q+HC+ +  G   ++ +G+ LVD+YM+         +FDE+ ERN+ +W 
Sbjct: 104 AGSLDGKLGRQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWT 163

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            +L  +        V  ++ +M+ EGV PN  +   ++       ++  G Q+H+ V+K 
Sbjct: 164 SLLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIGLQVHAMVVKH 223

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G+ +  I V N+L+  YS  G L +A+  FD + + D ++WNS+++ Y       +  E+
Sbjct: 224 GFEEA-IPVFNSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEI 282

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F +MQL   +P+  +F   +   +    +   K +     K GF    + V +AL     
Sbjct: 283 FNKMQLAGVKPTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQI-VITALMVALS 341

Query: 361 KCNVIESSVAVFE-SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           KC  ++ ++++F     G+++    ++++  L +G    AV +F  M  EG+  +  T S
Sbjct: 342 KCKEMDDALSLFSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYS 401

Query: 420 TTLKA-LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
             L     V  S        +H   IK+ +E + +V  +L+DAY + G+   + +VFE I
Sbjct: 402 AILTVHYPVFVSE-------MHAEVIKTNYERSSSVGTALLDAYVKLGNTIDAVKVFEII 454

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            + +++ +++++ GY++ G   EA  +   +I+ G+ P++ TF  V+  C       E  
Sbjct: 455 EAKDLMAWSAMLAGYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQG 514

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F++      ++      S ++ M  + G +D A E+ ++     D + W+S++     
Sbjct: 515 KQFHAYAIKMRLNNALCVSSALVTMYAKRGNIDSAHEVFKRQK-ERDLVSWNSMISGYSQ 573

Query: 599 HGN 601
           HG 
Sbjct: 574 HGQ 576



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 212/436 (48%), Gaps = 9/436 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + + G L  A+ +FD+M  RD VT+N +I+G  +     +   ++++M   G+K
Sbjct: 233 NSLISLYSRLGMLRDARDVFDKMEIRDWVTWNSMIAGYVRNGQDLEVFEIFNKMQLAGVK 292

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TF+SV+  C++         + C+ L  GF  +  + + L+    +      AL L
Sbjct: 293 PTHMTFASVIKSCASLRELALVKLMQCKALKSGFTTDQIVITALMVALSKCKEMDDALSL 352

Query: 168 FDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           F  + E +N+ +W  M+    +    D+ + ++++M+ EGV+PN  ++  ++      + 
Sbjct: 353 FSLMEEGKNVVSWTAMISGCLQNGGNDQAVNLFSQMRREGVKPNHFTYSAILT-VHYPVF 411

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           + E   +H+ VIK  + + +  V  AL+D Y   G+ I+A K F+ I   D+++W+++++
Sbjct: 412 VSE---MHAEVIKTNY-ERSSSVGTALLDAYVKLGNTIDAVKVFEIIEAKDLMAWSAMLA 467

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGYVTKLGFD 345
            YA      +A +LF ++     +P+  +F   +N  AS T     GKQ H Y  K+  +
Sbjct: 468 GYAQTGETEEAAKLFHQLIKEGIKPNEFTFSSVINACASPTAAAEQGKQFHAYAIKMRLN 527

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           + ++ V SAL  MY K   I+S+  VF+    R L   NS+++     G  K A+E+F  
Sbjct: 528 N-ALCVSSALVTMYAKRGNIDSAHEVFKRQKERDLVSWNSMISGYSQHGQAKKALEVFDE 586

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M    + +D VT    + A + +     G  +  +           +     ++D YSR 
Sbjct: 587 MQKRNMDVDAVTFIGVITACTHAGLVEKGQ-KYFNSMINDHHINPTMKHYSCMIDLYSRA 645

Query: 466 GHIELSHQVFEKIPSP 481
           G +E +  +  ++P P
Sbjct: 646 GMLEKAMGIINEMPFP 661



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 61/235 (25%), Positives = 118/235 (50%), Gaps = 6/235 (2%)

Query: 371 VFESAPGR--SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           +F+  P R  +L+  N L+ S       K+A+ +F  ++   +  DE TLS      + S
Sbjct: 47  LFDKIPHRPTTLKEHNQLLFSYSRDKQTKEALNLFVSLLHSSLQPDESTLSCVFNICAGS 106

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
               LG  R +HC  +K G   +++V  SL+D Y +  ++    +VF+++   NVV +TS
Sbjct: 107 LDGKLG--RQVHCQCVKFGLVDHVSVGTSLVDMYMKTENVNDGRRVFDEMGERNVVSWTS 164

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GYS NG+     ++   M   G++P++ T   V+A   + G+V  G L  ++M   +
Sbjct: 165 LLAGYSWNGLYGYVWELFCQMQYEGVLPNRYTVSTVIAALVNEGVVGIG-LQVHAMVVKH 223

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           G +     ++ +I +  R G+L  A ++  +     D + W+S++     +G ++
Sbjct: 224 GFEEAIPVFNSLISLYSRLGMLRDARDVFDKME-IRDWVTWNSMIAGYVRNGQDL 277


>gi|356561794|ref|XP_003549163.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 615

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 184/607 (30%), Positives = 311/607 (51%), Gaps = 25/607 (4%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           R + T+NL+I          Q L +Y  M   G+  +  T+  +L  C+N      G  +
Sbjct: 9   RSLYTWNLMIRDSTNNGFFTQTLNIYSSMAHSGVHGNNLTYPLLLKACANLPSIQHGTML 68

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  VL LGF  + ++ + LVD+Y +      A  +FDE+P+R++ +WN M+ A+   S  
Sbjct: 69  HGHVLKLGFQADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSM 128

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE------GKQLHSHVIKLGWVDVN 246
           D+ L +  +M   G EP   +F  ++ G S    LD       GK +H  +IKLG V + 
Sbjct: 129 DQALSLLKEMWVLGFEPTASTFVSILSGYSN---LDSFEFHLLGKSIHCCLIKLGIVYLE 185

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + +AN+L+  Y     + EA+K FD +    +ISW +++  Y       +A  LF++MQ 
Sbjct: 186 VSLANSLMGMYVQFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQ- 244

Query: 307 CRKRPSIRSFVEFLNFAS---RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
             +   I  FV FLN  S   +  ++     +H  V K G +     V++ L  MY KC 
Sbjct: 245 -HQSVGI-DFVVFLNLISGCIQVRDLLLASSVHSLVLKCGCNEKDP-VENLLITMYAKCG 301

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            + S+  +F+    +S+    S++   +H G+  +A+++F  M+   I  +  TL+T   
Sbjct: 302 NLTSARRIFDLIIEKSMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATV-- 359

Query: 424 ALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
              VSA A+LGS  +   +      +G ES+  V  SL+  YS+CG I  + +VFE++  
Sbjct: 360 ---VSACADLGSLSIGQEIEEYIFLNGLESDQQVQTSLIHMYSKCGSIVKAREVFERVTD 416

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
            ++  +TS++N Y+ +GMG EA+ +   M    G++PD + +  V   C+HSG+V+EG  
Sbjct: 417 KDLTVWTSMINSYAIHGMGNEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEGLK 476

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F SM+  +GI    +H +C+ID+LGR G LD A   +Q  P      +W  LL +CR+H
Sbjct: 477 YFKSMQKDFGITPTVEHCTCLIDLLGRVGQLDLALNAIQGMPPDVQAQVWGPLLSACRIH 536

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
           GN  +G      L++  P     Y  ++N Y+ +G+++ +  +R +   + L ++ G S 
Sbjct: 537 GNVELGELATVRLLDSSPGSSGSYVLMANLYTSLGKWKEAHMMRNSMDGKGLVKESGWSQ 596

Query: 660 IEVNSCH 666
           +EV   +
Sbjct: 597 VEVTDTY 603



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/448 (27%), Positives = 216/448 (48%), Gaps = 9/448 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q + +     +D + K  H+ SA+++FDEMP R +V++N ++S   +     QAL L  E
Sbjct: 78  QADTFVQTALVDMYSKCSHVASARQVFDEMPQRSVVSWNAMVSAYSRRSSMDQALSLLKE 137

Query: 101 MVSHGIKESASTFSSVLSVCSNAG---FYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYM 156
           M   G + +ASTF S+LS  SN     F+  G  IHC ++ LG   L + + + L+ +Y+
Sbjct: 138 MWVLGFEPTASTFVSILSGYSNLDSFEFHLLGKSIHCCLIKLGIVYLEVSLANSLMGMYV 197

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           +      A  +FD + E+++ +W  M+  + ++    E   ++ +M+ + V  + + F  
Sbjct: 198 QFCLMDEARKVFDLMDEKSIISWTTMIGGYVKIGHAVEAYGLFYQMQHQSVGIDFVVFLN 257

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++ GC     L     +HS V+K G  + +  V N L+  Y+ CG+L  A++ FD I   
Sbjct: 258 LISGCIQVRDLLLASSVHSLVLKCGCNEKDP-VENLLITMYAKCGNLTSARRIFDLIIEK 316

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
            ++SW S+++ Y       +AL+LF RM     RP+  +    ++  +  G++  G++I 
Sbjct: 317 SMLSWTSMIAGYVHLGHPGEALDLFRRMIRTDIRPNGATLATVVSACADLGSLSIGQEIE 376

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            Y+   G +     VQ++L  MY KC  I  +  VFE    + L    S++ S    G  
Sbjct: 377 EYIFLNGLESDQ-QVQTSLIHMYSKCGSIVKAREVFERVTDKDLTVWTSMINSYAIHGMG 435

Query: 397 KDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
            +A+ +F  M   EGI  D +  ++   A S S     G  +         G    +   
Sbjct: 436 NEAISLFHKMTTAEGIMPDAIVYTSVFLACSHSGLVEEG-LKYFKSMQKDFGITPTVEHC 494

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNV 483
             L+D   R G ++L+    + +P P+V
Sbjct: 495 TCLIDLLGRVGQLDLALNAIQGMP-PDV 521


>gi|15241714|ref|NP_198751.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75171567|sp|Q9FLZ9.1|PP405_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g39350
 gi|10177683|dbj|BAB11009.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332007040|gb|AED94423.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 677

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 184/613 (30%), Positives = 316/613 (51%), Gaps = 10/613 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK--ESASTFSS 115
           GH+  A+KLF+EMP   +++YN++I    +      A+ ++  MVS G+K      T+  
Sbjct: 63  GHITYARKLFEEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPF 122

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           V            G+ +H R+L   FG + Y+ + L+ +YM  G    A D+FD +  R+
Sbjct: 123 VAKAAGELKSMKLGLVVHGRILRSWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRD 182

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           + +WN M+  +      ++ L M++ M  E V+ +  +   M+  C     L+ G+ +H 
Sbjct: 183 VISWNTMISGYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHK 242

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            V +    D  I V NALV+ Y  CG + EA+  FD +   DVI+W  +++ Y +   + 
Sbjct: 243 LVEEKRLGD-KIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVE 301

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +ALEL   MQ    RP+  +    ++       V  GK +HG+  +    +  + ++++L
Sbjct: 302 NALELCRLMQFEGVRPNAVTIASLVSVCGDALKVNDGKCLHGWAVRQQV-YSDIIIETSL 360

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
             MY KC  ++    VF  A        ++++   + +  + DA+ +F  M  E +  + 
Sbjct: 361 ISMYAKCKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNI 420

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            TL++ L A +  A A+L     +HC   K+GF S++  +  L+  YS+CG +E +H++F
Sbjct: 421 ATLNSLLPAYA--ALADLRQAMNIHCYLTKTGFMSSLDAATGLVHVYSKCGTLESAHKIF 478

Query: 476 ----EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
               EK  S +VV + ++++GY  +G G  AL +   M++ G+ P+++TF   L  C+HS
Sbjct: 479 NGIQEKHKSKDVVLWGALISGYGMHGDGHNALQVFMEMVRSGVTPNEITFTSALNACSHS 538

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V+EG  +F  M   Y   A   HY+C++D+LGRAG LD+A  L+   P      +W +
Sbjct: 539 GLVEEGLTLFRFMLEHYKTLARSNHYTCIVDLLGRAGRLDEAYNLITTIPFEPTSTVWGA 598

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +C  H N  +G   AN L ELEP +   Y  ++N Y+ +G ++   ++R       L
Sbjct: 599 LLAACVTHENVQLGEMAANKLFELEPENTGNYVLLANIYAALGRWKDMEKVRSMMENVGL 658

Query: 652 TRDIGHSLIEVNS 664
            +  GHS IE+ S
Sbjct: 659 RKKPGHSTIEIRS 671



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 107/439 (24%), Positives = 203/439 (46%), Gaps = 7/439 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  N  +  ++  G +  A+ +FD M  RD++++N +ISG  +  +   AL ++D MV+ 
Sbjct: 153 YVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMISGYYRNGYMNDALMMFDWMVNE 212

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            +    +T  S+L VC +      G  +H  V     G  + + + LV++Y++ G    A
Sbjct: 213 SVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLGDKIEVKNALVNMYLKCGRMDEA 272

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD +  R++ TW  M+  + E    +  L +   M+ EGV PN ++   +V  C   
Sbjct: 273 RFVFDRMERRDVITWTCMINGYTEDGDVENALELCRLMQFEGVRPNAVTIASLVSVCGDA 332

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           + +++GK LH   ++   V  +I +  +L+  Y+ C  +    + F          W++I
Sbjct: 333 LKVNDGKCLHGWAVRQQ-VYSDIIIETSLISMYAKCKRVDLCFRVFSGASKYHTGPWSAI 391

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++     +L+ DAL LF RM+     P+I +    L   +   ++     IH Y+TK GF
Sbjct: 392 IAGCVQNELVSDALGLFKRMRREDVEPNIATLNSLLPAYAALADLRQAMNIHCYLTKTGF 451

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVF----ESAPGRSLECCNSLMTSLLHSGNIKDAV 400
              S+   + L  +Y KC  +ES+  +F    E    + +    +L++     G+  +A+
Sbjct: 452 -MSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKHKSKDVVLWGALISGYGMHGDGHNAL 510

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  MV  G+  +E+T ++ L A S S     G                +   +C ++D
Sbjct: 511 QVFMEMVRSGVTPNEITFTSALNACSHSGLVEEGLTLFRFMLEHYKTLARSNHYTC-IVD 569

Query: 461 AYSRCGHIELSHQVFEKIP 479
              R G ++ ++ +   IP
Sbjct: 570 LLGRAGRLDEAYNLITTIP 588



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 113/514 (21%), Positives = 242/514 (47%), Gaps = 18/514 (3%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           S   + S+L+  +     ++   +HC V++ G  ++ +I S L   Y   G    A  LF
Sbjct: 14  SVKQYQSLLNHFAATQSISKTKALHCHVIT-GGRVSGHILSTLSVTYALCGHITYARKLF 72

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE--PNGLSFCYMVRGCSIGML 226
           +E+P+ +L ++N+++R +       + + ++ +M +EGV+  P+G ++ ++ +       
Sbjct: 73  EEMPQSSLLSYNIVIRMYVREGLYHDAISVFIRMVSEGVKCVPDGYTYPFVAKAAGELKS 132

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +  G  +H  +++  W   + +V NAL+  Y   G +  A+  FD +   DVISWN+++S
Sbjct: 133 MKLGLVVHGRILR-SWFGRDKYVQNALLAMYMNFGKVEMARDVFDVMKNRDVISWNTMIS 191

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGF 344
            Y     + DAL +F  M          + V  L       ++  G+ +H  V   +LG 
Sbjct: 192 GYYRNGYMNDALMMFDWMVNESVDLDHATIVSMLPVCGHLKDLEMGRNVHKLVEEKRLG- 250

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               + V++AL +MY KC  ++ +  VF+    R +     ++      G++++A+E+  
Sbjct: 251 --DKIEVKNALVNMYLKCGRMDEARFVFDRMERRDVITWTCMINGYTEDGDVENALELCR 308

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  EG+  + VT+++ +     +   N G C  LH  A++    S+I +  SL+  Y++
Sbjct: 309 LMQFEGVRPNAVTIASLVSVCGDALKVNDGKC--LHGWAVRQQVYSDIIIETSLISMYAK 366

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           C  ++L  +VF      +   +++I+ G  +N +  +AL + + M +  + P+  T   +
Sbjct: 367 CKRVDLCFRVFSGASKYHTGPWSAIIAGCVQNELVSDALGLFKRMRREDVEPNIATLNSL 426

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL---LQQTP 581
           L        +++   +   +    G  +     + ++ +  + G L+ A ++   +Q+  
Sbjct: 427 LPAYAALADLRQAMNIHCYLTKT-GFMSSLDAATGLVHVYSKCGTLESAHKIFNGIQEKH 485

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
              D ++W +L+    +HG+   G     + ME+
Sbjct: 486 KSKDVVLWGALISGYGMHGD---GHNALQVFMEM 516


>gi|357111956|ref|XP_003557776.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33990-like [Brachypodium distachyon]
          Length = 747

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 187/592 (31%), Positives = 311/592 (52%), Gaps = 16/592 (2%)

Query: 79  NLLISGCGKFRHPKQALYLYDEMVS--HGIKESASTFSSVLSVC-SNAGFYTEGIQIHCR 135
           N LI+   +   P+ A  L   ++S  +  +    TF S++    SNA       Q+H  
Sbjct: 37  NTLIAAFSRAALPRLAFPLLRHILSCAYPFRPDGFTFPSLIRAAPSNA----SAAQLHAC 92

Query: 136 VLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
            L LG    +++    LV  Y+R G    A  +FDE+ ER++  WN ML   C  +R  E
Sbjct: 93  ALRLGLVRPSVFTSGSLVHAYLRFGRISEAYKVFDEMSERDVPAWNAMLSGLCRNARAAE 152

Query: 195 VLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL--HSHVIKLGWVDVNIFVANA 252
            + ++ +M  EGV  + ++   ++  C   +L D+   L  H + +K G +D  +FV NA
Sbjct: 153 AVGLFGRMVGEGVAGDTVTVSSVLPMCV--LLGDQVLALVMHVYAVKHG-LDKELFVCNA 209

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L+D Y   G L EA+  F  +   D+++WNSI+S          AL++F  M+     P 
Sbjct: 210 LIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQTAAALKMFQGMRGSGVSPD 269

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
           + + V   +  ++ G+    K +H YV + G+D   +   +A+ DMY K + IE++  +F
Sbjct: 270 VLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGNAIVDMYAKLSNIEAAQRMF 329

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASA 431
           +S P +     N+L+T  + +G   +AVE +G M   EG+   + T  + L A S   + 
Sbjct: 330 DSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLKAIQGTFVSVLPAYSHLGAL 389

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
             G    +H  +IK G   ++ V   L+D Y++CG +  +  +FEK+P  +   + +I++
Sbjct: 390 QQG--MRMHALSIKIGLNVDVYVGTCLIDLYAKCGKLAEAMLLFEKMPRRSTGPWNAIIS 447

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G   +G G EAL +   M Q G+ PD VTF+ +LA C+H+G+V +G+  F+ M+  Y I 
Sbjct: 448 GLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGLVDQGRSFFDVMQVTYDIV 507

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611
              +HY+CM DMLGRAG LD+A   +Q  P   D  +W +LL +CR+HGN  +G+  +  
Sbjct: 508 PIAKHYACMADMLGRAGQLDEAFNFIQNMPIKPDSAVWGALLGACRIHGNVEMGKVASQN 567

Query: 612 LMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           L EL+P +   Y  +SN Y+++G+++   ++R     + L +  G S IEV 
Sbjct: 568 LFELDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPGWSSIEVK 619



 Score =  199 bits (507), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 149/592 (25%), Positives = 277/592 (46%), Gaps = 61/592 (10%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           ++   AP+  S   L +  L     +P+    +++S   +  +++ G ++ A K+FDEM 
Sbjct: 75  SLIRAAPSNASAAQLHACALRLGLVRPS----VFTSGSLVHAYLRFGRISEAYKVFDEMS 130

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            RD+  +N ++SG  +     +A+ L+  MV  G+     T SSVL +C   G     + 
Sbjct: 131 ERDVPAWNAMLSGLCRNARAAEAVGLFGRMVGEGVAGDTVTVSSVLPMCVLLGDQVLALV 190

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H   +  G    L++ + L+D+Y ++G    A  +F  +  R+L TWN ++    +  +
Sbjct: 191 MHVYAVKHGLDKELFVCNALIDVYGKLGMLEEAQCVFHGMECRDLVTWNSIISGCEQRGQ 250

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
               L+M+  M+  GV P+ L+   +    + G      K LH +V++ GW   +I   N
Sbjct: 251 TAAALKMFQGMRGSGVSPDVLTLVSLASAIAQGGDGRSAKSLHCYVMRRGWDVDDIIAGN 310

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           A+VD Y+   ++  A++ FD +PV D +SWN++++ Y    L  +A+E +  MQ      
Sbjct: 311 AIVDMYAKLSNIEAAQRMFDSMPVQDSVSWNTLITGYMQNGLANEAVERYGHMQKHEGLK 370

Query: 312 SIR-SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           +I+ +FV  L   S  G +  G ++H    K+G +   V+V + L D+Y KC  +  ++ 
Sbjct: 371 AIQGTFVSVLPAYSHLGALQQGMRMHALSIKIGLN-VDVYVGTCLIDLYAKCGKLAEAML 429

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +FE  P RS    N++++ L   G+  +A+ +F  M  EGI  D VT  + L A S +  
Sbjct: 430 LFEKMPRRSTGPWNAIISGLGVHGHGAEALTLFSRMQQEGIKPDHVTFVSLLAACSHAGL 489

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSI 489
            + G          +S F                    ++    ++ +P + +  C   +
Sbjct: 490 VDQG----------RSFF--------------------DVMQVTYDIVPIAKHYACMADM 519

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           +    R G   EA + ++ M    + PD   +  +L  C   G V+ G++   + ++++ 
Sbjct: 520 LG---RAGQLDEAFNFIQNM---PIKPDSAVWGALLGACRIHGNVEMGKV---ASQNLFE 570

Query: 550 IDADR-QHYSCMIDMLGRAGILDKAEEL--------LQQTPGGGDCMMWSSL 592
           +D +   +Y  M +M  + G  D  +E+        LQ+TPG      WSS+
Sbjct: 571 LDPENVGYYVLMSNMYAKVGKWDGVDEVRSLVRRQNLQKTPG------WSSI 616


>gi|302765581|ref|XP_002966211.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
 gi|300165631|gb|EFJ32238.1| hypothetical protein SELMODRAFT_85415 [Selaginella moellendorffii]
          Length = 969

 Score =  296 bits (759), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 180/598 (30%), Positives = 313/598 (52%), Gaps = 23/598 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF-RHPKQALYL 97
           N  L +YS  R+ +D         ++ LFD M  RD V+++ +I  C +   H + AL L
Sbjct: 355 NSLLGMYSRCRSWED---------SRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPL 405

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           Y  M+  G+       S VL  C +      G  +H  V+  G   +L +G  LV++Y +
Sbjct: 406 YRSMLHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDL-VGISLVNMYAK 464

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +FD +  R+   WN M+ A+ E   P E L ++ +M+ EGV P+ ++F  +
Sbjct: 465 CGTVGEARKVFDRINNRSRILWNSMITAYQE-KDPHEALHLFREMQPEGVSPDRITFMTV 523

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C     L+ G+ +H+ ++  G+   ++ VA AL + Y+ CGSL EA+  FD +   D
Sbjct: 524 LNACVNAADLENGRTIHTRIVDSGFA-ADVRVATALFNMYAKCGSLGEARGVFDSMVFRD 582

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V+SWN++++ Y        A+ L + MQL   RP   +F   LN  S    +  G+QIH 
Sbjct: 583 VVSWNNMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHS 642

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES------APGRSLECCNSLMTSLL 391
           ++ +   ++  V V + L  MY  C  + ++  +F++         R L    S++T+  
Sbjct: 643 WIAESRLENDIVMV-TGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYE 701

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
             G  + A+E++  M    +  D VT  + L A   +  ++L   + +H   ++ G  ++
Sbjct: 702 QHGEYRKALELYEQMHSRQVEADRVTFISVLNA--CAHLSDLRQGQAIHARVMRRGLATD 759

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           +AV+ S++  Y +CG  + +  VFEK    ++  +T+++  Y+R+G G +AL +   + Q
Sbjct: 760 VAVANSIVFMYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQ 819

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G+    +TF+ +L+ C+H G+++EG   F SM  + GI+ + +H+SC++D+L RAG L 
Sbjct: 820 DGIELSNLTFVAMLSACSHVGLIEEGCEFFASMAEL-GIEPNMEHHSCLVDLLARAGHLH 878

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
            AEE L + P   + ++ ++LL +CRVHG+    RRVA  L  L+P   A Y  +SN 
Sbjct: 879 TAEEFLSRMPVAANTIVLTALLAACRVHGDVERARRVAEKLEALDPESEAPYVTLSNI 936



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 173/597 (28%), Positives = 295/597 (49%), Gaps = 31/597 (5%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI---SGCGKFRHPKQALYL 97
            L+I   N TI+ +VK G L+ A + F  M  RD+V++ ++I   S  GKF     +L L
Sbjct: 247 HLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKF---SLSLQL 303

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           + EM+  G   ++ TF S+LS C       +G QIH  V+      ++ + + L+ +Y R
Sbjct: 304 FREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHVVVANSLLGMYSR 363

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD----EVLRMYNKMKAEGVEPNGLS 213
                 +  LFD +  R+  +W+ ++ A    SR D    + L +Y  M  EGV P  L+
Sbjct: 364 CRSWEDSRSLFDRMSVRDSVSWSTIIMA---CSREDSHCRDALPLYRSMLHEGVMPKTLA 420

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++  C     L  GK +H+HVI+ G       V  +LV+ Y+ CG++ EA+K FD I
Sbjct: 421 LSMVLEACGSLAELKGGKLVHAHVIESGL--EGDLVGISLVNMYAKCGTVGEARKVFDRI 478

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
                I WNS+++ Y + D   +AL LF  MQ     P   +F+  LN      ++  G+
Sbjct: 479 NNRSRILWNSMITAYQEKD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGR 537

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            IH  +   GF    V V +AL +MY KC  +  +  VF+S   R +   N+++ + +  
Sbjct: 538 TIHTRIVDSGFA-ADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQG 596

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
            + + A+ +   M  EG+  D+ T ++ L A   S    L   R +H    +S  E++I 
Sbjct: 597 RDGEGAISLCWAMQLEGMRPDKATFTSLLNA--CSDPNRLVDGRQIHSWIAESRLENDIV 654

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPS------PNVVCFTSIMNGYSRNGMGREALDMLE 507
           +   L+  Y+ CG +  + ++F+ I S       ++  +TS++  Y ++G  R+AL++ E
Sbjct: 655 MVTGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEYRKALELYE 714

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M  R +  D+VTF+ VL  C H   +++GQ +   +    G+  D    + ++ M G+ 
Sbjct: 715 QMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMR-RGLATDVAVANSIVFMYGKC 773

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE----IIGRRVANILMELEPVDF 620
           G  D+A  + ++T    D  +W++L+ S   HG+      I RR+    +EL  + F
Sbjct: 774 GSFDEASIVFEKTK-HKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELSNLTF 829



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 172/657 (26%), Positives = 316/657 (48%), Gaps = 20/657 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSS-SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P    I TL   CT +  L    L+ D       +L+I   N TI+ +VK G L+ A + 
Sbjct: 8   PDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGCLDGAVQT 67

Query: 67  FDEMPARDMVTYNLLI---SGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           F  M  RD+V++ ++I   S  GKF     +L L+ EM+  G   ++ TF S+LS C   
Sbjct: 68  FARMKRRDVVSWTVMIGAYSQDGKF---SLSLQLFREMLLEGTAPNSVTFVSILSGCEAP 124

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR-MGPSVRALDLFDELPERNLATWNLM 182
               +G QIH  V+      ++ + + L+ +Y R        +  F  +  R++ +W +M
Sbjct: 125 SLLEQGRQIHALVVESSLESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVVSWTVM 184

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           + A+ +  +    ++++ +M  EG  PN ++F  ++ GC    LL++G+Q+H+ V++   
Sbjct: 185 IGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSL 244

Query: 243 VD-VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
              ++I V N  ++ Y  CG L  A ++F  +   DV+SW  ++  Y+       +L+LF
Sbjct: 245 ESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLF 304

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             M L    P+  +FV  L+       +  G+QIH  V +   +   V V ++L  MY +
Sbjct: 305 REMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLE-SHVVVANSLLGMYSR 363

Query: 362 CNVIESSVAVFESAPGR-SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           C   E S ++F+    R S+     +M       + +DA+ ++  M+ EG+    + LS 
Sbjct: 364 CRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSM 423

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L+A    + A L   +L+H   I+SG E ++ V  SL++ Y++CG +  + +VF++I +
Sbjct: 424 VLEA--CGSLAELKGGKLVHAHVIESGLEGDL-VGISLVNMYAKCGTVGEARKVFDRINN 480

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            + + + S++  Y       EAL +   M   G+ PD++TF+ VL  C ++  ++ G+ +
Sbjct: 481 RSRILWNSMITAYQEKD-PHEALHLFREMQPEGVSPDRITFMTVLNACVNAADLENGRTI 539

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
              +    G  AD +  + + +M  + G L +A  +        D + W++++ +  V G
Sbjct: 540 HTRIVD-SGFAADVRVATALFNMYAKCGSLGEARGVFDSMV-FRDVVSWNNMI-AAYVQG 596

Query: 601 NEIIGRRVANILMELEPV--DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
            +  G       M+LE +  D A ++ + N  S+        QI       +L  DI
Sbjct: 597 RDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAESRLENDI 653



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 159/633 (25%), Positives = 306/633 (48%), Gaps = 53/633 (8%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI---SGCGKFRHPKQAL 95
           N  L +YS  R+ +D        S  + F  M  RD+V++ ++I   S  GKF     ++
Sbjct: 150 NSLLGMYSRCRSWED--------SRMQTFARMKRRDVVSWTVMIGAYSQDGKF---SLSI 198

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVD 153
            L+ EM+  G   ++ TF S+LS C       +G QIH  V+      +L IG  +  ++
Sbjct: 199 QLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALVVESSLESHLDIGVLNLTIN 258

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y++ G    A+  F  +  R++ +W +M+ A+ +  +    L+++ +M  EG  PN ++
Sbjct: 259 MYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVT 318

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  ++ GC    LL++G+Q+H+ V++   ++ ++ VAN+L+  YS C S  +++  FD +
Sbjct: 319 FVSILSGCEAPSLLEQGRQIHALVVESS-LESHVVVANSLLGMYSRCRSWEDSRSLFDRM 377

Query: 274 PVDDVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
            V D +SW++I+   +  D    DAL L+  M      P   +    L        +  G
Sbjct: 378 SVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPKTLALSMVLEACGSLAELKGG 437

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           K +H +V + G +   V +  +L +MY KC  +  +  VF+    RS    NS++T+   
Sbjct: 438 KLVHAHVIESGLEGDLVGI--SLVNMYAKCGTVGEARKVFDRINNRSRILWNSMITAY-Q 494

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
             +  +A+ +F  M  EG+  D +T  T L A  V+A A+L + R +H   + SGF +++
Sbjct: 495 EKDPHEALHLFREMQPEGVSPDRITFMTVLNA-CVNA-ADLENGRTIHTRIVDSGFAADV 552

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V+ +L + Y++CG +  +  VF+ +   +VV + +++  Y +   G  A+ +   M   
Sbjct: 553 RVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWNNMIAAYVQGRDGEGAISLCWAMQLE 612

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PDK TF  +L  C+    + +G+ + +S  +   ++ D    + +I M    G L+ 
Sbjct: 613 GMRPDKATFTSLLNACSDPNRLVDGRQI-HSWIAESRLENDIVMVTGLITMYANCGSLNN 671

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A E+            + ++  + R H                   D  +++ +   Y +
Sbjct: 672 AREI------------FDNIFSNSRQHHR-----------------DLFLWTSMITAYEQ 702

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
            GE+  ++++ E   +R++  D    +  +N+C
Sbjct: 703 HGEYRKALELYEQMHSRQVEADRVTFISVLNAC 735



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 123/497 (24%), Positives = 238/497 (47%), Gaps = 12/497 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML   ++P+   ++ +   C S+  L    L+ ++   +           ++ + K G +
Sbjct: 409 MLHEGVMPKTLALSMVLEACGSLAELKGGKLVHAHVIESGLEGDLVGISLVNMYAKCGTV 468

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A+K+FD +  R  + +N +I+   + + P +AL+L+ EM   G+     TF +VL+ C
Sbjct: 469 GEARKVFDRINNRSRILWNSMITAYQE-KDPHEALHLFREMQPEGVSPDRITFMTVLNAC 527

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
            NA     G  IH R++  GF  ++ + + L ++Y + G    A  +FD +  R++ +WN
Sbjct: 528 VNAADLENGRTIHTRIVDSGFAADVRVATALFNMYAKCGSLGEARGVFDSMVFRDVVSWN 587

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            M+ A+ +    +  + +   M+ EG+ P+  +F  ++  CS    L +G+Q+HS + + 
Sbjct: 588 NMIAAYVQGRDGEGAISLCWAMQLEGMRPDKATFTSLLNACSDPNRLVDGRQIHSWIAE- 646

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD------DVISWNSIVSIYADYDLI 294
             ++ +I +   L+  Y+ CGSL  A++ FD I  +      D+  W S+++ Y  +   
Sbjct: 647 SRLENDIVMVTGLITMYANCGSLNNAREIFDNIFSNSRQHHRDLFLWTSMITAYEQHGEY 706

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
             ALEL+ +M   +      +F+  LN  +   ++  G+ IH  V + G     V V ++
Sbjct: 707 RKALELYEQMHSRQVEADRVTFISVLNACAHLSDLRQGQAIHARVMRRGLA-TDVAVANS 765

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           +  MYGKC   + +  VFE    + +    +L+ S    G+ + A+ +F  +  +GI L 
Sbjct: 766 IVFMYGKCGSFDEASIVFEKTKHKDISLWTALIASYARHGHGEQALWIFRRLRQDGIELS 825

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
            +T    L A S       G C      A + G E N+     L+D  +R GH+  + + 
Sbjct: 826 NLTFVAMLSACSHVGLIEEG-CEFFASMA-ELGIEPNMEHHSCLVDLLARAGHLHTAEEF 883

Query: 475 FEKIP-SPNVVCFTSIM 490
             ++P + N +  T+++
Sbjct: 884 LSRMPVAANTIVLTALL 900



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 120/496 (24%), Positives = 245/496 (49%), Gaps = 9/496 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   GI        ++L+ C+  G   EG  I  R+      L++ + +  +++Y++ G 
Sbjct: 1   MDRRGIPPDRVMIKTLLTACTKLGALEEGKLIQDRLAGTQLELDIGVRNLTINMYVKCGC 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A+  F  +  R++ +W +M+ A+ +  +    L+++ +M  EG  PN ++F  ++ G
Sbjct: 61  LDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSLSLQLFREMLLEGTAPNSVTFVSILSG 120

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK-KSFDFIPVDDVI 279
           C    LL++G+Q+H+ V++   ++ ++ VAN+L+  YS C S  +++ ++F  +   DV+
Sbjct: 121 CEAPSLLEQGRQIHALVVESS-LESHVVVANSLLGMYSRCRSWEDSRMQTFARMKRRDVV 179

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW  ++  Y+       +++LF  M L    P+  +FV  L+       +  G+QIH  V
Sbjct: 180 SWTVMIGAYSQDGKFSLSIQLFREMLLEGTAPNSVTFVSILSGCEAPSLLEQGRQIHALV 239

Query: 340 TKLGFD-HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            +   + H  + V +   +MY KC  ++ +V  F     R +     ++ +    G    
Sbjct: 240 VESSLESHLDIGVLNLTINMYVKCGCLDGAVQTFARMKRRDVVSWTVMIGAYSQDGKFSL 299

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           ++++F  M+ EG   + VT  + L      A + L   R +H   ++S  ES++ V+ SL
Sbjct: 300 SLQLFREMLLEGTAPNSVTFVSILSG--CEAPSLLEQGRQIHALVVESSLESHVVVANSL 357

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR-NGMGREALDMLEVMIQRGLIPD 517
           +  YSRC   E S  +F+++   + V +++I+   SR +   R+AL +   M+  G++P 
Sbjct: 358 LGMYSRCRSWEDSRSLFDRMSVRDSVSWSTIIMACSREDSHCRDALPLYRSMLHEGVMPK 417

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            +    VL  C     +K G+LV   +    G++ D    S +++M  + G + +A ++ 
Sbjct: 418 TLALSMVLEACGSLAELKGGKLVHAHVIE-SGLEGDLVGIS-LVNMYAKCGTVGEARKVF 475

Query: 578 QQTPGGGDCMMWSSLL 593
            +       ++W+S++
Sbjct: 476 DRINNRSR-ILWNSMI 490


>gi|225447423|ref|XP_002276196.1| PREDICTED: pentatricopeptide repeat-containing protein At3g12770
           [Vitis vinifera]
 gi|296081235|emb|CBI17979.3| unnamed protein product [Vitis vinifera]
          Length = 742

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 157/533 (29%), Positives = 308/533 (57%), Gaps = 5/533 (0%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH +++  G   + ++ +  V+    +G    A  +FDE PE ++  WN ++R +   +
Sbjct: 89  QIHAQLVVSGLVESGFLVTKFVNASWNIGEIGYARKVFDEFPEPSVFLWNAIIRGYSSHN 148

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + + MY++M+A GV P+G +   +++ CS   +L+ GK++H  + +LG+ + ++FV 
Sbjct: 149 FFGDAIEMYSRMQASGVNPDGFTLPCVLKACSGVPVLEVGKRVHGQIFRLGF-ESDVFVQ 207

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           N LV  Y+ CG + +A+  F+ +   +++SW S++S Y    L  +AL +F +M+    +
Sbjct: 208 NGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMRQRNVK 267

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + V  L   +   ++  GK IHG V K+G +     +  +LT MY KC  +  + +
Sbjct: 268 PDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEF-EPDLLISLTAMYAKCGQVMVARS 326

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
            F+     ++   N++++    +G   +AV +F  M+ + I  D +T+ + + A +   S
Sbjct: 327 FFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACAQVGS 386

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
            +L   + +     K+ + +++ V+ +L+D +++CG ++L+ +VF++    +VV +++++
Sbjct: 387 LDL--AKWMGDYINKTEYRNDVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWSAMI 444

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            GY  +G G++A+D+   M Q G+ P+ VTF+ +L  CNHSG+V+EG  +F+SMK  YGI
Sbjct: 445 VGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMK-YYGI 503

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
           +A  QHY+C++D+LGR+G L++A + +   P      +W +LL +C+++ +  +G   A 
Sbjct: 504 EARHQHYACVVDLLGRSGHLNEAYDFITTMPIEPGVSVWGALLGACKIYRHVTLGEYAAE 563

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            L  L+P +   Y Q+SN Y+    ++   ++R     + L++D+G+SLIE+N
Sbjct: 564 QLFSLDPFNTGHYVQLSNLYASSRLWDSVAKVRILMREKGLSKDLGYSLIEIN 616



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 110/453 (24%), Positives = 214/453 (47%), Gaps = 8/453 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G +  A+K+FDE P   +  +N +I G         A+ +Y  M + G+     T   VL
Sbjct: 117 GEIGYARKVFDEFPEPSVFLWNAIIRGYSSHNFFGDAIEMYSRMQASGVNPDGFTLPCVL 176

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             CS       G ++H ++  LGF  ++++ + LV LY + G   +A  +F+ L +RN+ 
Sbjct: 177 KACSGVPVLEVGKRVHGQIFRLGFESDVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIV 236

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  M+  + +   P E LR++ +M+   V+P+ ++   ++R  +    L++GK +H  V
Sbjct: 237 SWTSMISGYGQNGLPMEALRIFGQMRQRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCV 296

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K+G ++    +  +L   Y+ CG ++ A+  FD + + +V+ WN+++S YA      +A
Sbjct: 297 VKMG-LEFEPDLLISLTAMYAKCGQVMVARSFFDQMEIPNVMMWNAMISGYAKNGYTNEA 355

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           + LF  M     R    +    +   ++ G++   K +  Y+ K  +    V V +AL D
Sbjct: 356 VGLFQEMISKNIRTDSITVRSAILACAQVGSLDLAKWMGDYINKTEY-RNDVFVNTALID 414

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           M+ KC  ++ +  VF+    + +   ++++      G  +DA+++F  M   G+  ++VT
Sbjct: 415 MFAKCGSVDLAREVFDRTLDKDVVVWSAMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVT 474

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A + S     G   L H      G E+       ++D   R GH+  ++     
Sbjct: 475 FVGLLTACNHSGLVEEG-WELFHSMKY-YGIEARHQHYACVVDLLGRSGHLNEAYDFITT 532

Query: 478 IP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
           +P  P V  + +++     Y    +G  A + L
Sbjct: 533 MPIEPGVSVWGALLGACKIYRHVTLGEYAAEQL 565



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 84/391 (21%), Positives = 184/391 (47%), Gaps = 5/391 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  +  + K G +  A+ +F+ +  R++V++  +ISG G+   P +AL ++ +M 
Sbjct: 203 DVFVQNGLVALYAKCGRVEQARIVFEGLDDRNIVSWTSMISGYGQNGLPMEALRIFGQMR 262

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K       SVL   ++     +G  IH  V+ +G      +   L  +Y + G  +
Sbjct: 263 QRNVKPDWIALVSVLRAYTDVEDLEQGKSIHGCVVKMGLEFEPDLLISLTAMYAKCGQVM 322

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   FD++   N+  WN M+  + +    +E + ++ +M ++ +  + ++    +  C+
Sbjct: 323 VARSFFDQMEIPNVMMWNAMISGYAKNGYTNEAVGLFQEMISKNIRTDSITVRSAILACA 382

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               LD  K +  ++ K  + + ++FV  AL+D ++ CGS+  A++ FD     DV+ W+
Sbjct: 383 QVGSLDLAKWMGDYINKTEYRN-DVFVNTALIDMFAKCGSVDLAREVFDRTLDKDVVVWS 441

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y  +    DA++LF+ M+     P+  +FV  L   + +G V  G ++   +   
Sbjct: 442 AMIVGYGLHGRGQDAIDLFYAMKQAGVCPNDVTFVGLLTACNHSGLVEEGWELFHSMKYY 501

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G +    H  + + D+ G+   +  +     + P   +E   S+  +LL +  I   V +
Sbjct: 502 GIEARHQHY-ACVVDLLGRSGHLNEAYDFITTMP---IEPGVSVWGALLGACKIYRHVTL 557

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
             +  ++   LD       ++  ++ AS+ L
Sbjct: 558 GEYAAEQLFSLDPFNTGHYVQLSNLYASSRL 588


>gi|356506341|ref|XP_003521943.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Glycine max]
          Length = 895

 Score =  296 bits (758), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 190/620 (30%), Positives = 318/620 (51%), Gaps = 13/620 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  +  + KSG+   A  +F+ +   D+V++N ++SG   F     AL     M   GI
Sbjct: 115 SNSLMKMYCKSGNFGKALIVFENLSHPDIVSWNTVLSG---FEESVDALNFARSMHYCGI 171

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                T++S L+ C     +  G Q+H  V+  G G  ++IG+ LV +Y R G    A  
Sbjct: 172 AFDPVTYTSALAFCWGDHGFLFGWQLHSLVVKCGLGCEVFIGNALVTMYSRWGMLDEARR 231

Query: 167 LFDELPERNLATWNLMLRAFCELSR--PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           +FDE+PER+L +WN M+  + +  +    E + ++  M   G+  + +S    V  C   
Sbjct: 232 VFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNMVRHGMLIDHVSLTGAVSACGHM 291

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L+ G+Q+H    K+G+   ++ V N L+  YS C    +AK  F+ I   +V+SW ++
Sbjct: 292 KNLELGRQIHGLTQKVGY-GTHVSVCNVLMSTYSKCEVPKDAKAVFESISNRNVVSWTTM 350

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +SI  +     DA+ LF  M++    P+  +F+  ++  +    V  G  IHG   K  F
Sbjct: 351 ISIDEE-----DAVSLFNAMRVNGVYPNDVTFIGLIHAVTIRNLVTEGLTIHGLCIKSCF 405

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
                 V ++   MY K   I+ S  +FE    R     N+L++    +G+ K+A+  + 
Sbjct: 406 LSEQT-VSNSFITMYAKFECIQESTKIFEELNCRETVSWNALISGYAQNGSYKEALLTYL 464

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
             V E I  ++ T  + L A++ +   +L   +  H   +K G  ++  VS +L+D Y +
Sbjct: 465 SAVKE-IKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGK 523

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G I  S +VF +        +T+I++ Y+R+G     + +   M + G+ PD +TFL V
Sbjct: 524 RGDIIESQRVFNETLERTQFAWTAIISAYARHGDFESVMSLYTEMEREGINPDSITFLSV 583

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           LA C   GMV  G  VF+SM   + I+   +HYS M+DMLGR G LD+AEEL+ Q PGG 
Sbjct: 584 LAACCRKGMVDAGHRVFDSMVKKHSIEPTSEHYSIMVDMLGRVGRLDEAEELMHQIPGGP 643

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
              +  SLL SCR+HGN  +  +V   L+E++P     Y  ++N Y+E G++E   ++R 
Sbjct: 644 GLSVLQSLLGSCRLHGNMEMAEKVVGRLIEMDPASSGPYVLMANLYAEKGKWEKVAEVRR 703

Query: 645 TALARKLTRDIGHSLIEVNS 664
               R + +++G S ++V++
Sbjct: 704 GMRGRGVKKEVGFSWVDVSN 723



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 146/549 (26%), Positives = 257/549 (46%), Gaps = 39/549 (7%)

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD +P  +  + N  +  C   R P QAL  +         E+    +  LS+ +  G  
Sbjct: 34  FDFIPHPNAASVNHSMLNCLHSRLPFQALTAFKNHFQLHSLENVDEVTVALSLKACQGES 93

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G QIH   +  GF   + + + L+ +Y + G   +AL +F+ L   ++ +WN +L  F
Sbjct: 94  KLGCQIHGFAVCSGFVSFVTVSNSLMKMYCKSGNFGKALIVFENLSHPDIVSWNTVLSGF 153

Query: 187 CELSRPDEVLRMYNKMKAEGV--EP----NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            E     + L     M   G+  +P    + L+FC+   G   G       QLHS V+K 
Sbjct: 154 EE---SVDALNFARSMHYCGIAFDPVTYTSALAFCWGDHGFLFGW------QLHSLVVKC 204

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF--DAL 298
           G +   +F+ NALV  YS  G L EA++ FD +P  D++SWN+++S YA     +  +A+
Sbjct: 205 G-LGCEVFIGNALVTMYSRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAV 263

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            LF  M          S    ++      N+  G+QIHG   K+G+    V V + L   
Sbjct: 264 LLFVNMVRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYG-THVSVCNVLMST 322

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y KC V + + AVFES   R++    +++     S + +DAV +F  M   G+  ++VT 
Sbjct: 323 YSKCEVPKDAKAVFESISNRNVVSWTTMI-----SIDEEDAVSLFNAMRVNGVYPNDVTF 377

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
              + A+++      G    +H   IKS F S   VS S +  Y++   I+ S ++FE++
Sbjct: 378 IGLIHAVTIRNLVTEG--LTIHGLCIKSCFLSEQTVSNSFITMYAKFECIQESTKIFEEL 435

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
                V + ++++GY++NG  +EAL +  +   + + P++ TF  VL     + +     
Sbjct: 436 NCRETVSWNALISGYAQNGSYKEAL-LTYLSAVKEIKPNQYTFGSVL-----NAIAAAED 489

Query: 539 LVFNSMKSVY------GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  N  KS +      G+  D      ++DM G+ G + +++ +  +T        W+++
Sbjct: 490 ISLNHGKSCHSHLLKLGLGTDPIVSGALLDMYGKRGDIIESQRVFNETLERTQ-FAWTAI 548

Query: 593 LRSCRVHGN 601
           + +   HG+
Sbjct: 549 ISAYARHGD 557



 Score =  152 bits (383), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 114/474 (24%), Positives = 222/474 (46%), Gaps = 18/474 (3%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR--HPKQALYLYDEM 101
           ++  N  +  + + G L+ A+++FDEMP RD+V++N +ISG  +    +  +A+ L+  M
Sbjct: 210 VFIGNALVTMYSRWGMLDEARRVFDEMPERDLVSWNAMISGYAQEGKCYGLEAVLLFVNM 269

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V HG+     + +  +S C +      G QIH     +G+G ++ + + L+  Y +    
Sbjct: 270 VRHGMLIDHVSLTGAVSACGHMKNLELGRQIHGLTQKVGYGTHVSVCNVLMSTYSKCEVP 329

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F+ +  RN+ +W  M+         ++ + ++N M+  GV PN ++F  ++   
Sbjct: 330 KDAKAVFESISNRNVVSWTTMISI-----DEEDAVSLFNAMRVNGVYPNDVTFIGLIHAV 384

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +I  L+ EG  +H   IK  ++     V+N+ +  Y+    + E+ K F+ +   + +SW
Sbjct: 385 TIRNLVTEGLTIHGLCIKSCFLSEQT-VSNSFITMYAKFECIQESTKIFEELNCRETVSW 443

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF--GKQIHGYV 339
           N+++S YA      +AL L +   +   +P+  +F   LN  +   ++    GK  H ++
Sbjct: 444 NALISGYAQNGSYKEAL-LTYLSAVKEIKPNQYTFGSVLNAIAAAEDISLNHGKSCHSHL 502

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            KLG     + V  AL DMYGK   I  S  VF     R+     +++++    G+ +  
Sbjct: 503 LKLGLGTDPI-VSGALLDMYGKRGDIIESQRVFNETLERTQFAWTAIISAYARHGDFESV 561

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + ++  M  EGI  D +T  + L A       + G  R+      K   E        ++
Sbjct: 562 MSLYTEMEREGINPDSITFLSVLAACCRKGMVDAGH-RVFDSMVKKHSIEPTSEHYSIMV 620

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           D   R G ++ + ++  +IP  P +    S++     +G     ++M E ++ R
Sbjct: 621 DMLGRVGRLDEAEELMHQIPGGPGLSVLQSLLGSCRLHG----NMEMAEKVVGR 670


>gi|302771700|ref|XP_002969268.1| hypothetical protein SELMODRAFT_92008 [Selaginella moellendorffii]
 gi|300162744|gb|EFJ29356.1| hypothetical protein SELMODRAFT_92008 [Selaginella moellendorffii]
          Length = 849

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 183/635 (28%), Positives = 335/635 (52%), Gaps = 15/635 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML   ++P   T   +   C+S     + L+  +  +   + +   +N +I+ F K G L
Sbjct: 218 MLLEGVVPNNITFLAVLAACSS--ARDAELVYGNVVEAEWESDTMVANASINMFSKCGCL 275

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           + A+ +F  M   D+ ++N +++   +     +AL L+  M S  +    +T    LS C
Sbjct: 276 DRARDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPSE-VAVDKTTLVIALSTC 334

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           +      +G  IH RV  LG   ++  G+ LV +Y R G    A  +FD +  +N+ +WN
Sbjct: 335 AAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWN 394

Query: 181 LMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            M+ A+  + S     L ++  M  +GV P   +   +V       +   GKQLH  ++ 
Sbjct: 395 NMIAAYGRDESLHSRALEIFRLMLLDGVRPTRTTALNVVSAVECQSV---GKQLHGWIVD 451

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  + F+ +ALV+ Y   GSL +A++ F+ I   DV +WN+IV +   +    +ALE
Sbjct: 452 TG-LYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALE 510

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F RM L     +  +F+  L+  S    V +G+++HG + + G +  + +V +AL  MY
Sbjct: 511 WFSRMLLEGASGNRATFLLALSAVS-PDRVCYGRRLHGLIAESGLEADN-NVANALISMY 568

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +C  +E +   F+    +S+    S++ + +  G+ ++A+++F  M  E    D VT +
Sbjct: 569 ARCKSLEDARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRMELEP---DRVTFT 625

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           T L+A ++ ++   G  +L+H  A + G ESN+ V+ +L+  +S+ G++  + ++FE + 
Sbjct: 626 TVLEACTIVSAHREG--KLVHSRARELGLESNVFVATALIHMHSKFGNLGEARRIFEAVE 683

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           +P + C+ +++ GY++ G  +  +D    M QRG+ PD +TFL V++ C+H+G+V++G  
Sbjct: 684 APTLACWNAMLGGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHAGLVEKGAR 743

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F SM + YG+    + Y C+ID+L RAG L++A + LQ  P G   + W +LL +C++ 
Sbjct: 744 TFASMGTDYGVGHGLEDYGCLIDLLARAGQLEEAYDFLQGMPCGPSDVTWKTLLAACKIQ 803

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           G+   G   A  ++E EP   A + ++SN  S  G
Sbjct: 804 GDVRRGSAAARSVIEREPYGAAAFVELSNMSSIAG 838



 Score =  211 bits (537), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 153/576 (26%), Positives = 285/576 (49%), Gaps = 23/576 (3%)

Query: 6   LLPRVRTITTLAPTCTSIV--PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           +LP   T  ++   C S+    L   L++D     N + ++   N  +    K   L+ A
Sbjct: 125 VLPDRVTFISILNACESLAQGELVHRLIID----KNLESDVVIGNALMKMLAKCYDLDGA 180

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
            + F  MP RD++++  +++   +  H  +A   Y  M+  G+  +  TF +VL+ CS+A
Sbjct: 181 ARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSA 240

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
               +   ++  V+   +  +  + +  ++++ + G   RA D+F  +   ++ +WN M+
Sbjct: 241 ---RDAELVYGNVVEAEWESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVKSWNAMV 297

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
            A  +     E L ++ +M +E V  +  +    +  C+    L++GK +HS V +LG +
Sbjct: 298 AALAQHGFSSEALELFRRMPSE-VAVDKTTLVIALSTCAAPESLEDGKSIHSRVARLG-L 355

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA-DYDLIFDALELFF 302
           + ++    ALV  YS CG L EA++ FD I   +V+SWN++++ Y  D  L   ALE+F 
Sbjct: 356 ETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIFR 415

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M L   RP+  +    LN  S       GKQ+HG++   G  +    + SAL +MY + 
Sbjct: 416 LMLLDGVRPTRTT---ALNVVSAVECQSVGKQLHGWIVDTGL-YSDSFIGSALVNMYERT 471

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +  +  VFE    R +   N+++   +  G  ++A+E F  M+ EG   +  T    L
Sbjct: 472 GSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATF---L 528

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            ALS  +   +   R LH    +SG E++  V+ +L+  Y+RC  +E +   F+++   +
Sbjct: 529 LALSAVSPDRVCYGRRLHGLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLEDKS 588

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V +TS++      G  +EA+D+ + M    L PD+VTF  VL  C      +EG+LV +
Sbjct: 589 IVSWTSVIAACVDLGSCQEAIDLFQRM---ELEPDRVTFTTVLEACTIVSAHREGKLVHS 645

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
             + + G++++    + +I M  + G L +A  + +
Sbjct: 646 RAREL-GLESNVFVATALIHMHSKFGNLGEARRIFE 680



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 144/579 (24%), Positives = 270/579 (46%), Gaps = 47/579 (8%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           F+K   ++ A ++F++M  R MV +  +++         +A   +  M   G+     TF
Sbjct: 73  FIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLPDRVTF 132

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            S+L+ C +     +G  +H  ++      ++ IG+ L+ +  +      A   F  +P 
Sbjct: 133 ISILNACES---LAQGELVHRLIIDKNLESDVVIGNALMKMLAKCYDLDGAARFFQRMPR 189

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++ +W  M+ A+       E    Y +M  EGV PN ++F  ++  CS      + + +
Sbjct: 190 RDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSAR---DAELV 246

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           + +V++  W + +  VANA ++ +S CG L  A+  F  +   DV SWN++V+  A +  
Sbjct: 247 YGNVVEAEW-ESDTMVANASINMFSKCGCLDRARDVFHRMKRWDVKSWNAMVAALAQHGF 305

Query: 294 IFDALELFFRMQLCRKRPS-----IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
             +ALELF RM      PS       + V  L+  +   ++  GK IH  V +LG +   
Sbjct: 306 SSEALELFRRM------PSEVAVDKTTLVIALSTCAAPESLEDGKSIHSRVARLGLETDV 359

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL-----LHSGNIKDAVEMF 403
           V   +AL  MY +C  +  +  VF+   G+++   N+++ +      LHS     A+E+F
Sbjct: 360 V-AGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHS----RALEIF 414

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M+ +G+     T +T L  +S     ++G  + LH   + +G  S+  +  +L++ Y 
Sbjct: 415 RLMLLDGV---RPTRTTALNVVSAVECQSVG--KQLHGWIVDTGLYSDSFIGSALVNMYE 469

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           R G +  + +VFEKI   +V  + +I+     +G  REAL+    M+  G   ++ TFL 
Sbjct: 470 RTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLL 529

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
            L+  +   +    +L  + + +  G++AD    + +I M  R   L+ A     +    
Sbjct: 530 ALSAVSPDRVCYGRRL--HGLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLE-D 586

Query: 584 GDCMMWSSLLRSCRVHGN-----EIIGRRVANILMELEP 617
              + W+S++ +C   G+     ++  R      MELEP
Sbjct: 587 KSIVSWTSVIAACVDLGSCQEAIDLFQR------MELEP 619



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/380 (21%), Positives = 182/380 (47%), Gaps = 13/380 (3%)

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  +V  C+   LL E   ++S +   G + ++ F   ++V  +  C S+ +A + F+ +
Sbjct: 31  FLKLVNLCAERKLLHEATSVYSSIQAQG-ILLDGFFGASVVRMFIKCRSIHDASRVFEQM 89

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
               ++ W S+V+ + D + +  A   FFRMQL    P   +F+  LN          G+
Sbjct: 90  LDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLPDRVTFISILNACESLAQ---GE 146

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            +H  +     +   V + +AL  M  KC  ++ +   F+  P R +     ++T+   +
Sbjct: 147 LVHRLIIDKNLE-SDVVIGNALMKMLAKCYDLDGAARFFQRMPRRDVISWTGMVTAYARN 205

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G+I +A   +  M+ EG+  + +T    L A S +  A      L++   +++ +ES+  
Sbjct: 206 GHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSARDAE-----LVYGNVVEAEWESDTM 260

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V+ + ++ +S+CG ++ +  VF ++   +V  + +++   +++G   EAL++   M    
Sbjct: 261 VANASINMFSKCGCLDRARDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPSE- 319

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           +  DK T +  L+ C     +++G+ + +S  +  G++ D    + ++ M  R G L +A
Sbjct: 320 VAVDKTTLVIALSTCAAPESLEDGKSI-HSRVARLGLETDVVAGTALVTMYSRCGDLGEA 378

Query: 574 EELLQQTPGGGDCMMWSSLL 593
             +      G + + W++++
Sbjct: 379 RRVFDGIL-GKNVVSWNNMI 397



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 64/249 (25%), Positives = 128/249 (51%), Gaps = 12/249 (4%)

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +++  M+ KC  I  +  VFE    RS+    S++T+ +   ++  A   F  M  EG+ 
Sbjct: 67  ASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVL 126

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D VT  + L A       +L    L+H   I    ES++ +  +LM   ++C  ++ + 
Sbjct: 127 PDRVTFISILNACE-----SLAQGELVHRLIIDKNLESDVVIGNALMKMLAKCYDLDGAA 181

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           + F+++P  +V+ +T ++  Y+RNG   EA      M+  G++P+ +TFL VLA C+ + 
Sbjct: 182 RFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSA- 240

Query: 533 MVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
             ++ +LV+ N +++ +  ++D    +  I+M  + G LD+A ++  +     D   W++
Sbjct: 241 --RDAELVYGNVVEAEW--ESDTMVANASINMFSKCGCLDRARDVFHRMK-RWDVKSWNA 295

Query: 592 LLRSCRVHG 600
           ++ +   HG
Sbjct: 296 MVAALAQHG 304


>gi|317106770|dbj|BAJ53262.1| JMS10C05.5 [Jatropha curcas]
          Length = 638

 Score =  296 bits (758), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 171/597 (28%), Positives = 320/597 (53%), Gaps = 8/597 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R+ +T+  LI G       + AL +  EM   G   +  T S +L  CS+  +   G
Sbjct: 1   MLVRNTITWTSLIKGYLDDNEFESALNIASEMHKSGEALNEHTCSVILQACSSPDYRIFG 60

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            Q HC V+  GF  N+ +G+ L+ +Y R      A  +FD +  +++  +N M+  +   
Sbjct: 61  QQFHCFVIKCGFDENVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARA 120

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              ++ +R++  M   G++PN  +F  ++  C   + ++EG+Q      K G+++    +
Sbjct: 121 GNGEKAIRVFINMLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLN-ETSI 179

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            NA+++ Y   G   EA++ F  +   ++ISW +++S Y        A++ F  + LC  
Sbjct: 180 GNAIINMYGKKGMAREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGV 239

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
                     L+  S   N+  G QIHG V KLG+   +V++ +AL D+Y KC  + S+ 
Sbjct: 240 NFDSSLLTTILDGCSECRNLELGLQIHGLVIKLGY-ACAVNIGTALVDLYAKCGNLMSAR 298

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNI--KDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
            VF+    + +   N+++   + +     +D + +F     +GI  D VT S   + LS+
Sbjct: 299 MVFDGLSSKRIASFNAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFS---RLLSL 355

Query: 428 SAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           SA+ + LG  R  H  AIK+GFE++++V+ +++  Y++CG IE +H++F  +   + + +
Sbjct: 356 SANHSTLGRGRCYHAYAIKTGFEADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISW 415

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            ++++ Y+ +G G + L + E MI++   PD++T L +L  C +SG+ ++G  +FN M+ 
Sbjct: 416 NAMISAYALHGQGAKVLLLFEEMIKKEFAPDEITILSILQACTYSGLFRDGISLFNVMEP 475

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            YGI    +HY+CM+D+LGRAG L +A +++ ++P     ++W +L+  C++ G+   G+
Sbjct: 476 KYGIKPLLEHYACMVDLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVNVCKLCGDRNFGK 535

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             +  L+EL PV+   Y  VSN Y+     + + ++R      KL+++ G S IE++
Sbjct: 536 LASKYLLELSPVEAGSYILVSNMYAGERMLDEAAKVRTVMNDLKLSKEAGTSWIEID 592



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 109/453 (24%), Positives = 215/453 (47%), Gaps = 8/453 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+      I  + +S     A+K+FD M  +D+  +N +I    +  + ++A+ ++  M+
Sbjct: 75  NVVVGTSLIAMYTRSKLFGDAEKVFDSMACKDVRCFNFMILEYARAGNGEKAIRVFINML 134

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G++ +  TF++++S C       EG Q        GF     IG+ ++++Y + G + 
Sbjct: 135 NAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGMAR 194

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  + +RNL +W  ++  +       + +  + ++   GV  +      ++ GCS
Sbjct: 195 EAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDGCS 254

Query: 223 IGMLLDEGKQLHSHVIKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               L+ G Q+H  VIKLG+   VNI    ALVD Y+ CG+L+ A+  FD +    + S+
Sbjct: 255 ECRNLELGLQIHGLVIKLGYACAVNI--GTALVDLYAKCGNLMSARMVFDGLSSKRIASF 312

Query: 282 NSIVSIYAD--YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           N+I++ + +   D   D + LF   +L   +P + +F   L+ ++    +  G+  H Y 
Sbjct: 313 NAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYA 372

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF+   + V +A+  MY KC  IE +  +F           N+++++    G     
Sbjct: 373 IKTGFE-ADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYALHGQGAKV 431

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  M+ +    DE+T+ + L+A + S     G   L +    K G +  +     ++
Sbjct: 432 LLLFEEMIKKEFAPDEITILSILQACTYSGLFRDG-ISLFNVMEPKYGIKPLLEHYACMV 490

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
           D   R GH+  +  +  K P S + + + +++N
Sbjct: 491 DLLGRAGHLSEAMDIINKSPFSKSTLLWRTLVN 523



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 86/292 (29%), Positives = 153/292 (52%), Gaps = 4/292 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYS-SNRTIDDFVKSGH 59
           ML+  L P   T T +   C   + +               LN  S  N  I+ + K G 
Sbjct: 133 MLNAGLQPNDYTFTNIISACDGDLGIEEGEQFLGLSFKYGFLNETSIGNAIINMYGKKGM 192

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
              A+++F  M  R+++++  LISG  +    K+A+  + E+   G+   +S  +++L  
Sbjct: 193 AREAERMFSAMTDRNLISWTALISGYTRSGDGKKAVDTFMELHLCGVNFDSSLLTTILDG 252

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS       G+QIH  V+ LG+   + IG+ LVDLY + G  + A  +FD L  + +A++
Sbjct: 253 CSECRNLELGLQIHGLVIKLGYACAVNIGTALVDLYAKCGNLMSARMVFDGLSSKRIASF 312

Query: 180 NLMLRAFCELSRPDEV--LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           N +L  F E SR  E   + ++N  + +G++P+ ++F  ++   +    L  G+  H++ 
Sbjct: 313 NAILAGFMENSRDGEEDPIVLFNHFRLDGIKPDMVTFSRLLSLSANHSTLGRGRCYHAYA 372

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           IK G+ + ++ VANA++  Y+ CGS+ EA + F+ +   D ISWN+++S YA
Sbjct: 373 IKTGF-EADLSVANAVITMYAKCGSIEEAHRMFNVMNDHDSISWNAMISAYA 423


>gi|302774170|ref|XP_002970502.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
 gi|300162018|gb|EFJ28632.1| hypothetical protein SELMODRAFT_93612 [Selaginella moellendorffii]
          Length = 825

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 169/586 (28%), Positives = 322/586 (54%), Gaps = 7/586 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + + G L  A+ +F  M  RD++ +N LI+  G+  H ++A+ LY  M+  G K
Sbjct: 240 NALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCK 299

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               TF ++L++ +     T+   +H  ++  G  +N+ +G+ LV +Y +         L
Sbjct: 300 PDKVTFVALLTMSNGPEALTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWL 359

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+++P+RN+ +WN+M+ A+ +     + +++   M+ +GV+P+ ++   ++  C+    L
Sbjct: 360 FEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADL 419

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G+++H  + + G  + ++ + N+L++ Y  CG + +A+  FD I   +VISW ++++ 
Sbjct: 420 KLGRKVHGWIAE-GRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTA 478

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+  +    AL LF  + L   +P+  +F+E L+       +  G+ +H    + G D  
Sbjct: 479 YSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALGKGRLVHSCAVQSGND-T 537

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM-TSLLHSGNIKDAVEMFGFM 406
            V + SAL  MYG+C  I  + A F+    R      S M  + +  G  ++ ++   FM
Sbjct: 538 DVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFM 597

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA-VSCSLMDAYSRC 465
             +G+ +   T ++TL A   S  A+L   + +H    +  F++  A V+ SL+  Y +C
Sbjct: 598 QQQGLDMSPATFASTLSA--CSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKC 655

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ + +VFE     +++C+ +I++GY+++G  R+A+++   M Q G+ PD VTF+C+L
Sbjct: 656 GSLDCAREVFETSRRQDIICWNAIISGYAQHGQTRDAVELFHRMQQEGVTPDPVTFVCIL 715

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+H G++ EG   + SM  + G++  + +Y+C+ID+LGRAG L +AEE +Q       
Sbjct: 716 SVCSHGGLLDEGVYAYASMVEL-GLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPA 774

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
               +SLL SC+ HG+   GRR A  +ME++P   + +  +S+ YS
Sbjct: 775 IETLTSLLSSCKSHGDVQRGRRAAEGIMEMDPRSSSAHVVLSSIYS 820



 Score =  231 bits (589), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 156/604 (25%), Positives = 302/604 (50%), Gaps = 10/604 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T+     +C +   L +  L+     Q   Q ++   N  +  +   G 
Sbjct: 92  MLLEGVKPDNITLLAALTSCETSQALPAGKLIHGLIAQSGHQCDLILENALVSMYGSCGS 151

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ AK++FD MPAR+++T+  +I G       +QA  ++  M   G K +  T+ +++  
Sbjct: 152 VDDAKRVFDAMPARNVITWTAMI-GAHAETSLEQAFKVFRLMELEGFKSNFVTYVTLVQA 210

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS   F   GI +H R +     +   + + L+ +Y R G    A  +F  + ER++  W
Sbjct: 211 CSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAW 270

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  + +    +E + +Y  M  EG +P+ ++F  ++   +    L + K +HSH+++
Sbjct: 271 NALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTDVKLVHSHIVE 330

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G V +NI +  ALV  YS C SL + +  F+ +P  +VISWN +V+ YA + L   A++
Sbjct: 331 SG-VSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQ 389

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +   MQL   +P   + V  LN  + + ++  G+++HG++ + G     + + ++L +MY
Sbjct: 390 ITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAE-GRCEADLILWNSLLNMY 448

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           G+C  +E +  VF+    R++    +++T+         A+ +F  +   G+   + T  
Sbjct: 449 GRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGV---KPTCI 505

Query: 420 TTLKALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           T L+AL     A  LG  RL+H CA++SG ++++++  +L+  Y RCG I  +   F+  
Sbjct: 506 TFLEALDACVGAEALGKGRLVHSCAVQSGNDTDVSLGSALVAMYGRCGSIRDAKACFDDT 565

Query: 479 P-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
               N V +++++  + ++G  RE L  L  M Q+GL     TF   L+ C++   ++EG
Sbjct: 566 EVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFASTLSACSNLADLREG 625

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           + + + ++            + ++ M G+ G LD A E+  +T    D + W++++    
Sbjct: 626 KRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVF-ETSRRQDIICWNAIISGYA 684

Query: 598 VHGN 601
            HG 
Sbjct: 685 QHGQ 688



 Score =  209 bits (533), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 151/582 (25%), Positives = 278/582 (47%), Gaps = 10/582 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++  N  I  + K   L+ A + F+ M  +++ T+  +I  C        A+ L  +M+ 
Sbjct: 35  VFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAHHHCHSLAIILLRQMLL 94

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G+K    T  + L+ C  +     G  IH  +   G   +L + + LV +Y   G    
Sbjct: 95  EGVKPDNITLLAALTSCETSQALPAGKLIHGLIAQSGHQCDLILENALVSMYGSCGSVDD 154

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD +P RN+ TW  M+ A  E S  ++  +++  M+ EG + N +++  +V+ CS 
Sbjct: 155 AKRVFDAMPARNVITWTAMIGAHAETSL-EQAFKVFRLMELEGFKSNFVTYVTLVQACSK 213

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              L+ G  LH   ++     +   + NAL+  Y  CG L +A+  F  +   D+I+WN+
Sbjct: 214 PEFLEVGIILHMRSVESS-SAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNA 272

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +++ Y  +  + +A+ L+  M     +P   +FV  L  ++    +   K +H ++ + G
Sbjct: 273 LITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTDVKLVHSHIVESG 332

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
               ++ + +AL  MY KC  +E +  +FE  P R++   N ++T+    G  + AV++ 
Sbjct: 333 VSI-NIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQIT 391

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
            +M  +G+  D VT    L   + SA   LG  R +H    +   E+++ +  SL++ Y 
Sbjct: 392 EYMQLDGVKPDNVTCVGLLNVCTGSADLKLG--RKVHGWIAEGRCEADLILWNSLLNMYG 449

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           RCG +E +  VF+ I   NV+ +T+++  YSR      AL +   +   G+ P  +TFL 
Sbjct: 450 RCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLE 509

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
            L  C  +  + +G+LV +S     G D D    S ++ M GR G +  A+     T   
Sbjct: 510 ALDACVGAEALGKGRLV-HSCAVQSGNDTDVSLGSALVAMYGRCGSIRDAKACFDDTEVR 568

Query: 584 GDCMMWSSLLRSCRVHGNEIIG----RRVANILMELEPVDFA 621
            + + WS+++ +   HG +  G    R +    +++ P  FA
Sbjct: 569 KNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFA 610



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 117/444 (26%), Positives = 229/444 (51%), Gaps = 6/444 (1%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           ++H +++       +++G+ L+  Y +      A + F+ +  +N+ TW  ++       
Sbjct: 21  RLHSQIVRASLDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAHHH 80

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                + +  +M  EGV+P+ ++    +  C     L  GK +H  + + G    ++ + 
Sbjct: 81  CHSLAIILLRQMLLEGVKPDNITLLAALTSCETSQALPAGKLIHGLIAQSGH-QCDLILE 139

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NALV  Y +CGS+ +AK+ FD +P  +VI+W +++  +A+  L   A ++F  M+L   +
Sbjct: 140 NALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHAETSL-EQAFKVFRLMELEGFK 198

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
            +  ++V  +   S+   +  G  +H    +         + +AL  MYG+C  +E + A
Sbjct: 199 SNFVTYVTLVQACSKPEFLEVGIILHMRSVE-SSSAMETPLCNALITMYGRCGRLEDARA 257

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F S   R +   N+L+T     G++++AV ++  M+ EG   D+VT    L  +S    
Sbjct: 258 IFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTF-VALLTMSNGPE 316

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           A L   +L+H   ++SG   NIA+  +L+  YS+C  +E +  +FEK+P  NV+ +  ++
Sbjct: 317 A-LTDVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMV 375

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
             Y+++G+GR+A+ + E M   G+ PD VT + +L  C  S  +K G+ V   +      
Sbjct: 376 TAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGR-C 434

Query: 551 DADRQHYSCMIDMLGRAGILDKAE 574
           +AD   ++ +++M GR G +++AE
Sbjct: 435 EADLILWNSLLNMYGRCGEVEQAE 458



 Score =  177 bits (448), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 243/500 (48%), Gaps = 12/500 (2%)

Query: 18  PTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVT 77
           P   + V L  S +++S       +NI      +  + K   L   + LF++MP R++++
Sbjct: 315 PEALTDVKLVHSHIVES----GVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVIS 370

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +N++++   K    ++A+ + + M   G+K    T   +L+VC+ +     G ++H  + 
Sbjct: 371 WNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIA 430

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR 197
                 +L + + L+++Y R G   +A  +FD + +RN+ +W  ML A+   +R D  L 
Sbjct: 431 EGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALL 490

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           +++ +   GV+P  ++F   +  C     L +G+ +HS  ++ G  D ++ + +ALV  Y
Sbjct: 491 LFHAIHLSGVKPTCITFLEALDACVGAEALGKGRLVHSCAVQSG-NDTDVSLGSALVAMY 549

Query: 258 SACGSLIEAKKSFDFIPV-DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF 316
             CGS+ +AK  FD   V  + ++W+++++ +  +    + L+    MQ      S  +F
Sbjct: 550 GRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATF 609

Query: 317 VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
              L+  S   ++  GK+IH YV +  FD  +  V ++L  MYGKC  ++ +  VFE++ 
Sbjct: 610 ASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSR 669

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
            + + C N++++     G  +DAVE+F  M  EG+  D VT    L   S     + G  
Sbjct: 670 RQDIICWNAIISGYAQHGQTRDAVELFHRMQQEGVTPDPVTFVCILSVCSHGGLLDEGV- 728

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSR 495
              +   ++ G E        ++D   R G ++ + +  + + + P +   TS+++    
Sbjct: 729 -YAYASMVELGLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPAIETLTSLLSSCKS 787

Query: 496 NG---MGREALDMLEVMIQR 512
           +G    GR A + +  M  R
Sbjct: 788 HGDVQRGRRAAEGIMEMDPR 807



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/409 (22%), Positives = 204/409 (49%), Gaps = 12/409 (2%)

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           + +  +++ C     LD  ++LHS +++   +D  +F+ N L+  Y  C SL +A ++F+
Sbjct: 1   VEYVRLLQACPKLKALDIARRLHSQIVRAS-LDNRVFLGNHLIHTYGKCHSLDDAWETFE 59

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +   +V +W +I+ + A +     A+ L  +M L   +P   + +  L     +  +  
Sbjct: 60  RMSYKNVYTWTAIIGVCAHHHCHSLAIILLRQMLLEGVKPDNITLLAALTSCETSQALPA 119

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           GK IHG + + G     + +++AL  MYG C  ++ +  VF++ P R++    +++ +  
Sbjct: 120 GKLIHGLIAQSGHQCDLI-LENALVSMYGSCGSVDDAKRVFDAMPARNVITWTAMIGAHA 178

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            + +++ A ++F  M  EG   + VT  T ++A S      +G   +LH  +++S     
Sbjct: 179 ET-SLEQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEVGI--ILHMRSVESSSAME 235

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             +  +L+  Y RCG +E +  +F  +   +++ + +++  Y ++G   EA+ + ++M+Q
Sbjct: 236 TPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQ 295

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G  PDKVTF+ +L   N    + + +LV + +    G+  +    + ++ M  +   L+
Sbjct: 296 EGCKPDKVTFVALLTMSNGPEALTDVKLVHSHIVE-SGVSINIALGTALVAMYSKCESLE 354

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL--MELEPV 618
               L ++ P   + + W+ ++ +   HG   +GR+   I   M+L+ V
Sbjct: 355 DTRWLFEKMP-QRNVISWNVMVTAYAKHG---LGRKAVQITEYMQLDGV 399


>gi|224082698|ref|XP_002306801.1| predicted protein [Populus trichocarpa]
 gi|222856250|gb|EEE93797.1| predicted protein [Populus trichocarpa]
          Length = 787

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 179/626 (28%), Positives = 333/626 (53%), Gaps = 9/626 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +N  +  + K   +  A+KLFD M  R D+V++N +IS         +AL L+ EM 
Sbjct: 45  VFVANSLVSMYAKCNDILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQ 104

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +  T  + L  C ++ F   G++IH  +L     L++Y+ + LV +++R G   
Sbjct: 105 KAGVGANTYTLVAALQACEDSSFKKLGMEIHAAILKSNQVLDVYVANALVAMHVRFGKMS 164

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FDEL E++  TWN M+  F +    +E L+ +  ++   ++P+ +S   ++    
Sbjct: 165 YAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASG 224

Query: 223 -IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
            +G LL+ GK++H++ +K  W+D N+ + N L+D YS C  +  A   FD +   D+ISW
Sbjct: 225 RLGYLLN-GKEIHAYAMK-NWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISW 282

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            ++++ YA  +   +AL+L  ++Q              L   S    +   K++HGY  K
Sbjct: 283 TTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGSTLLACSGLRCLSHAKEVHGYTLK 342

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G     + +Q+ + D+Y  C  I  +  +FES   + +    S+++  +H+G   +A+ 
Sbjct: 343 RGLS--DLMMQNMIIDVYADCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALG 400

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M +  +  D +TL + L A +  ++ N G  + +H    + GF    +   SL+D 
Sbjct: 401 VFYLMKETSVEPDSITLVSILSAAASLSALNKG--KEIHGFIFRKGFMLEGSTVNSLVDM 458

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y+ CG +E +++VF    S ++V +T+++N Y  +G G+ A+++  +M  + LIPD +TF
Sbjct: 459 YACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRGKAAVELFSIMEDQKLIPDHITF 518

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L +L  C+HSG++ EG+ +  +MK  Y ++   +HY+C++D+LGRA  L++A   ++   
Sbjct: 519 LALLYACSHSGLINEGKRLLETMKCKYQLEPWPEHYACLVDLLGRANHLEEAYHFVKSMQ 578

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
                 +W + L +CR+H N+ +G   A  L++L+P     Y  +SN ++  G ++   +
Sbjct: 579 IEPTAEVWCAFLGACRIHSNKKLGEIAAQKLLDLDPDSPGSYVLISNVFAASGRWKDVEE 638

Query: 642 IRETALARKLTRDIGHSLIEV-NSCH 666
           +R       L ++ G S IEV N  H
Sbjct: 639 VRMRMKGGGLKKNPGCSWIEVGNKVH 664



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 220/452 (48%), Gaps = 7/452 (1%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           + N  L++Y +N  +   V+ G ++ A ++FDE+  +D +T+N +I+G  +     +AL 
Sbjct: 140 KSNQVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNSMIAGFTQNGLYNEALQ 199

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
            +  +    +K    +  S+L+     G+   G +IH   +      NL IG+ L+D+Y 
Sbjct: 200 FFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNWLDSNLRIGNTLIDMYS 259

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           +      A  +FD++  ++L +W  ++ A+ + +   E L++  K++ +G++ + +    
Sbjct: 260 KCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLLRKVQTKGMDVDTMMIGS 319

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
            +  CS    L   K++H + +K G  D  + + N ++D Y+ CG++  A + F+ I   
Sbjct: 320 TLLACSGLRCLSHAKEVHGYTLKRGLSD--LMMQNMIIDVYADCGNINYATRMFESIKCK 377

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SW S++S Y    L  +AL +F+ M+     P   + V  L+ A+    +  GK+IH
Sbjct: 378 DVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVSILSAAASLSALNKGKEIH 437

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G++ + GF      V S L DMY  C  +E++  VF     +SL    +++ +    G  
Sbjct: 438 GFIFRKGFMLEGSTVNS-LVDMYACCGSLENAYKVFICTRSKSLVLWTTMINAYGMHGRG 496

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           K AVE+F  M D+ +  D +T    L A S S   N G  RLL     K   E       
Sbjct: 497 KAAVELFSIMEDQKLIPDHITFLALLYACSHSGLINEGK-RLLETMKCKYQLEPWPEHYA 555

Query: 457 SLMDAYSRCGHIELSHQVFEKI---PSPNVVC 485
            L+D   R  H+E ++   + +   P+  V C
Sbjct: 556 CLVDLLGRANHLEEAYHFVKSMQIEPTAEVWC 587



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 121/497 (24%), Positives = 246/497 (49%), Gaps = 8/497 (1%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G+   + TF  VL  C        G +IH  ++  G+   +++ + LV +Y +    + A
Sbjct: 5   GVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGYDSIVFVANSLVSMYAKCNDILGA 64

Query: 165 LDLFDELPERN-LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
             LFD + ERN + +WN ++ A+    +  E L ++ +M+  GV  N  +    ++ C  
Sbjct: 65  RKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAALQACED 124

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                 G ++H+ ++K   V ++++VANALV  +   G +  A + FD +   D I+WNS
Sbjct: 125 SSFKKLGMEIHAAILKSNQV-LDVYVANALVAMHVRFGKMSYAARIFDELDEKDNITWNS 183

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +++ +    L  +AL+ F  +Q    +P   S +  L  + R G +  GK+IH Y  K  
Sbjct: 184 MIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISILAASGRLGYLLNGKEIHAYAMKNW 243

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            D  ++ + + L DMY KC  +  +  VF+    + L    +++ +   +    +A+++ 
Sbjct: 244 LD-SNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNNCHTEALKLL 302

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             +  +G+ +D + + +TL  L+ S    L   + +H   +K G  S++ +   ++D Y+
Sbjct: 303 RKVQTKGMDVDTMMIGSTL--LACSGLRCLSHAKEVHGYTLKRGL-SDLMMQNMIIDVYA 359

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
            CG+I  + ++FE I   +VV +TS+++ Y  NG+  EAL +  +M +  + PD +T + 
Sbjct: 360 DCGNINYATRMFESIKCKDVVSWTSMISCYVHNGLANEALGVFYLMKETSVEPDSITLVS 419

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L+       + +G+ +   +    G   +    + ++DM    G L+ A ++   T   
Sbjct: 420 ILSAAASLSALNKGKEIHGFIFR-KGFMLEGSTVNSLVDMYACCGSLENAYKVFICTR-S 477

Query: 584 GDCMMWSSLLRSCRVHG 600
              ++W++++ +  +HG
Sbjct: 478 KSLVLWTTMINAYGMHG 494



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 108/416 (25%), Positives = 203/416 (48%), Gaps = 28/416 (6%)

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M+  GV  +  +F  +++ C +   +  G ++H  +IK G+ D  +FVAN+LV  Y+ C 
Sbjct: 1   MRVLGVPFDSFTFPCVLKACGVVEDIHRGAEIHGLIIKCGY-DSIVFVANSLVSMYAKCN 59

Query: 262 SLIEAKKSFDFI-PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
            ++ A+K FD +   +DV+SWNSI+S Y+      +AL LF  MQ      +  + V  L
Sbjct: 60  DILGARKLFDRMNERNDVVSWNSIISAYSLNGQCMEALGLFREMQKAGVGANTYTLVAAL 119

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
                +     G +IH  + K       V+V +AL  M+ +   +  +  +F+    +  
Sbjct: 120 QACEDSSFKKLGMEIHAAILKSN-QVLDVYVANALVAMHVRFGKMSYAARIFDELDEKDN 178

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCR 437
              NS++     +G   +A++ F  + D  +  DEV+L + L     +AS  LG   + +
Sbjct: 179 ITWNSMIAGFTQNGLYNEALQFFCGLQDANLKPDEVSLISIL-----AASGRLGYLLNGK 233

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H  A+K+  +SN+ +  +L+D YS+C  +  +  VF+K+ + +++ +T+++  Y++N 
Sbjct: 234 EIHAYAMKNWLDSNLRIGNTLIDMYSKCCCVAYAGLVFDKMINKDLISWTTVIAAYAQNN 293

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID-----A 552
              EAL +L  +  +G+  D +     L  C+       G    +  K V+G       +
Sbjct: 294 CHTEALKLLRKVQTKGMDVDTMMIGSTLLACS-------GLRCLSHAKEVHGYTLKRGLS 346

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH---GNEIIG 605
           D    + +ID+    G ++ A  + +      D + W+S++ SC VH    NE +G
Sbjct: 347 DLMMQNMIIDVYADCGNINYATRMFESIK-CKDVVSWTSMI-SCYVHNGLANEALG 400


>gi|115479139|ref|NP_001063163.1| Os09g0413300 [Oryza sativa Japonica Group]
 gi|113631396|dbj|BAF25077.1| Os09g0413300 [Oryza sativa Japonica Group]
          Length = 810

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 185/628 (29%), Positives = 339/628 (53%), Gaps = 23/628 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P+ +++     ++ + K G + +A + F  MP R++V++   I+G  +   P  A+ L 
Sbjct: 200 DPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLL 259

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EMV +G+  +  T +S+L  C+      E  QIH  VL     L+  +   L+  Y   
Sbjct: 260 REMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNF 319

Query: 159 GPSVRALDLFDELPE-RNLATWNLMLRAFCE--LSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           G    +  +F+E     N + W+  +       L R  ++LR   +M  +G+ PN    C
Sbjct: 320 GFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLR---RMFHQGLRPN--DKC 374

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           Y     S+  + + G QLHS  IK G++   I V +AL   YS C ++ ++ K F+ +  
Sbjct: 375 YASVFSSVNSI-EFGGQLHSSAIKEGFIH-GILVGSALSTMYSRCDNVQDSYKVFEEMQE 432

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +SW ++V+ +A +    +A   F  M L   +P   S    L+  +R   +  GK++
Sbjct: 433 RDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEV 492

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG+  ++  +  +  +      MY KC  ++++  +F++ P +     +S+++    +G 
Sbjct: 493 HGHTLRVYGE--TTFINDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGC 550

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNI 452
            ++A+ +F  MV   I +D    S+ L     S  A++     C+ LH  AIK+G  S+ 
Sbjct: 551 GEEAISLFQLMVAASIRIDSYICSSIL-----SLCADIARPFYCKPLHGYAIKAGILSDQ 605

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           +VS SL+  YSR G+++ S +VF++I  P++V +T+I++GY+++G  + AL M ++M+Q 
Sbjct: 606 SVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQL 665

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD V  + VL+ C+ +G+V++G   FNSM++ YG++ + QHY CM+D+LGR+G L +
Sbjct: 666 GVRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAE 725

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A+  +   P   D M+WS+LL +CRVH + ++GR V N + E    D   ++ +SN  + 
Sbjct: 726 AKYFVDSMPMKPDLMVWSTLLAACRVHDDTVLGRFVENKIREGN-YDSGSFATLSNILAN 784

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLI 660
            G++E   +IR+T   + + ++ G S++
Sbjct: 785 SGDWEEVARIRKT--MKGVNKEPGWSMV 810



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 134/577 (23%), Positives = 263/577 (45%), Gaps = 46/577 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N Y     +D   KSG L  A ++F +      V +N  +SG  +      A+ ++ +MV
Sbjct: 103 NAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMV 162

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               + ++ T+S  LS C+     + G  +H  VL      ++++G+ LV++Y + G   
Sbjct: 163 WGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMG 222

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+  F  +P RN+ +W   +  F +   P   + +  +M   GV  N  +   ++  C+
Sbjct: 223 AAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACA 282

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISW 281
              ++ E  Q+H  V+K   + ++  V  AL+  Y+  G +  ++K F+    V +   W
Sbjct: 283 QMSMVREASQIHGMVLKTE-MYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIW 341

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++ +S  +++ L+  +++L  RM     RP+ + +       S   ++ FG Q+H    K
Sbjct: 342 SAFISGVSNHSLL-RSVQLLRRMFHQGLRPNDKCYASVF---SSVNSIEFGGQLHSSAIK 397

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF HG + V SAL+ MY +C+ ++ S  VFE    R      +++      G+  +A  
Sbjct: 398 EGFIHG-ILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFL 456

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL----LHCCAIKSGFESNIAVSCS 457
            F  M+ +G   D V+L+  L A       N   C L    +H   ++   E+     C 
Sbjct: 457 TFRNMILDGFKPDHVSLTAILSA------CNRPECLLKGKEVHGHTLRVYGETTFINDC- 509

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
            +  YS+C  ++ + ++F+  P  + V ++S+++GY+ NG G EA+ + ++M+   +  D
Sbjct: 510 FISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRID 569

Query: 518 KVTFLCVLAGCN-----------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
                 +L+ C            H   +K G L            +D+   S ++ +  R
Sbjct: 570 SYICSSILSLCADIARPFYCKPLHGYAIKAGIL------------SDQSVSSSLVKVYSR 617

Query: 567 AGILDKAEELLQQ--TPGGGDCMMWSSLLRSCRVHGN 601
           +G +D + ++  +   P   D + W++++     HG+
Sbjct: 618 SGNMDDSRKVFDEISVP---DLVAWTTIIDGYAQHGS 651



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 122/472 (25%), Positives = 210/472 (44%), Gaps = 14/472 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q++C     G   N Y+ + +VDL  + G    AL +F +    +   WN  +       
Sbjct: 90  QVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNG 149

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                + M+  M     EPN  ++   +  C+ G  L  G+ +H  V++    + ++FV 
Sbjct: 150 EGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRD-PEYDVFVG 208

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +LV+ Y+ CG +  A + F  +PV +V+SW + ++ +   D    A+ L    ++ R  
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLL--REMVRNG 266

Query: 311 PSIRSF--VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +I  +     L   ++   V    QIHG V K       V V+ AL   Y     IE S
Sbjct: 267 VAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCV-VKEALISTYTNFGFIELS 325

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VFE A   S     S   S + + ++  +V++   M  +G+  ++   ++   +++  
Sbjct: 326 EKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVN-- 383

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            S   G    LH  AIK GF   I V  +L   YSRC +++ S++VFE++   + V +T+
Sbjct: 384 -SIEFGG--QLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTA 440

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ G++ +G   EA      MI  G  PD V+   +L+ CN    + +G+ V      VY
Sbjct: 441 MVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRVY 500

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           G         C I M  +   +  A  +   TP   D +MWSS++     +G
Sbjct: 501 GETTFIN--DCFISMYSKCQGVQTARRIFDATP-RKDQVMWSSMISGYATNG 549



 Score = 67.4 bits (163), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 10/176 (5%)

Query: 20  CTSIVPLSSSLLLDSYCQPNPQLNIYS--------SNRTIDDFVKSGHLNSAKKLFDEMP 71
           C+SI+ L + +    YC+P     I +        S+  +  + +SG+++ ++K+FDE+ 
Sbjct: 573 CSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEIS 632

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
             D+V +  +I G  +    + AL ++D MV  G++       SVLS CS  G   +G  
Sbjct: 633 VPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFN 692

Query: 132 -IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRA 185
             +    + G    L     +VDL  R G    A    D +P + +L  W+ +L A
Sbjct: 693 YFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLLAA 748


>gi|18483237|gb|AAL73981.1|AF466201_10 putative vegetative storage protein [Sorghum bicolor]
          Length = 779

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/624 (28%), Positives = 317/624 (50%), Gaps = 15/624 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP-KQALYLYDEMVSHGI 106
            + ++  +  G L  A+++FD +PA D   YN LI     +R P   A+ LY  M+   +
Sbjct: 37  QQELEQHIARGQLALARQVFDRIPAPDARAYNALIRAY-SWRGPFHAAIDLYRSMLYFRV 95

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +  TF  VL  CS       G  IH    ++G   +L++ + L+DLY+R      A +
Sbjct: 96  PPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCARFGPAAN 155

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGM 225
           +F ++P R++  WN ML  +         +     M+  G + PN  +   ++   +   
Sbjct: 156 VFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLPLLAQHG 215

Query: 226 LLDEGKQLHSHVIKLGWVDVN---IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
            L +G  +H++ ++  ++D N   + +  AL+D Y+ C  L+ A + F  + V + ++W+
Sbjct: 216 ALFQGTSVHAYCLR-AYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRNEVTWS 274

Query: 283 SIVSIYADYDLIFDALELFFRM---QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +++  +   D + +A  LF  M    +C    S  S    L   +   ++  G Q+H  +
Sbjct: 275 ALIGGFVLCDRMTEAFNLFKDMLVEGMCFL--SATSVASALRVCASLADLRMGTQLHALL 332

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G  H  +   ++L  MY K  +I  +  +F+    +      +L++  + +G  ++A
Sbjct: 333 AKSGI-HADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEA 391

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
             +F  M    +  D  T+ + + A S  A+   G C   H   I  G     ++  SL+
Sbjct: 392 FLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCS--HGSVIIRGLALETSICNSLI 449

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG I+LS QVF+K+P+ ++V + +++ GY  +G+G+EA  +   M  +G  PD V
Sbjct: 450 DMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDV 509

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+C++A C+HSG+V EG+  F++M   YGI    +HY CM+D+L R G LD+A + +Q 
Sbjct: 510 TFICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQS 569

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D  +W +LL +CR+H N  +G++V+ ++ +L P     +  +SN +S  G F+ +
Sbjct: 570 MPLKADVRVWGALLGACRIHKNIDLGKQVSRMIQKLGPEGTGNFVLLSNIFSAAGRFDEA 629

Query: 640 MQIRETALARKLTRDIGHSLIEVN 663
            ++R     +   +  G S IE+N
Sbjct: 630 AEVRIIQKVKGFKKSPGCSWIEIN 653



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 121/485 (24%), Positives = 217/485 (44%), Gaps = 9/485 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTIDDFVKSGH 59
           ML  ++ P   T   +   C+++  L +   + ++        +++ S   ID +++   
Sbjct: 90  MLYFRVPPNKYTFPFVLKACSALADLCAGRTIHAHAAAVGLHTDLFVSTALIDLYIRCAR 149

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL-YLYDEMVSHGIKESASTFSSVLS 118
              A  +F +MP RD+V +N +++G         A+ +L D     G++ +AST  S+L 
Sbjct: 150 FGPAANVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDRGGLRPNASTLVSLLP 209

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLN---LYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           + +  G   +G  +H   L      N   + IG+ L+D+Y +    V A  +F  +  RN
Sbjct: 210 LLAQHGALFQGTSVHAYCLRAYLDQNEEQVLIGTALLDMYAKCKHLVYACRVFHGMTVRN 269

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLH 234
             TW+ ++  F    R  E   ++  M  EG+   +  S    +R C+    L  G QLH
Sbjct: 270 EVTWSALIGGFVLCDRMTEAFNLFKDMLVEGMCFLSATSVASALRVCASLADLRMGTQLH 329

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           + + K G +  ++   N+L+  Y+  G + EA   FD I + D IS+ +++S Y      
Sbjct: 330 ALLAKSG-IHADLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKA 388

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +A  +F +MQ C  +P I + V  +   S    +  G+  HG V   G       + ++
Sbjct: 389 EEAFLVFKKMQACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLAL-ETSICNS 447

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L DMY KC  I+ S  VF+  P R +   N+++      G  K+A  +F  M ++G   D
Sbjct: 448 LIDMYAKCGRIDLSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPD 507

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           +VT    + A S S     G          K G    +     ++D  +R G ++ ++Q 
Sbjct: 508 DVTFICLIAACSHSGLVTEGK-HWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQF 566

Query: 475 FEKIP 479
            + +P
Sbjct: 567 IQSMP 571



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 124/255 (48%), Gaps = 4/255 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ + N  +  + K+G +N A  LFDE+  +D ++Y  L+SG  +    ++A  ++ +M 
Sbjct: 340 DLTAGNSLLSMYAKAGLINEATMLFDEIAIKDTISYGALLSGYVQNGKAEEAFLVFKKMQ 399

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  ++   +T  S++  CS+      G   H  V+  G  L   I + L+D+Y + G   
Sbjct: 400 ACNVQPDIATMVSLIPACSHLAALQHGRCSHGSVIIRGLALETSICNSLIDMYAKCGRID 459

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  +FD++P R++ +WN M+  +       E   ++  MK +G EP+ ++F  ++  CS
Sbjct: 460 LSRQVFDKMPARDIVSWNTMIAGYGIHGLGKEATTLFLSMKNQGFEPDDVTFICLIAACS 519

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              L+ EGK     +     +   +     +VD  +  G L EA +    +P+  DV  W
Sbjct: 520 HSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGFLDEAYQFIQSMPLKADVRVW 579

Query: 282 NSIVS---IYADYDL 293
            +++    I+ + DL
Sbjct: 580 GALLGACRIHKNIDL 594


>gi|125605681|gb|EAZ44717.1| hypothetical protein OsJ_29347 [Oryza sativa Japonica Group]
          Length = 701

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 185/628 (29%), Positives = 339/628 (53%), Gaps = 23/628 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P+ +++     ++ + K G + +A + F  MP R++V++   I+G  +   P  A+ L 
Sbjct: 91  DPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLL 150

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EMV +G+  +  T +S+L  C+      E  QIH  VL     L+  +   L+  Y   
Sbjct: 151 REMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNF 210

Query: 159 GPSVRALDLFDELPE-RNLATWNLMLRAFCE--LSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           G    +  +F+E     N + W+  +       L R  ++LR   +M  +G+ PN    C
Sbjct: 211 GFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLR---RMFHQGLRPN--DKC 265

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           Y     S+  + + G QLHS  IK G++   I V +AL   YS C ++ ++ K F+ +  
Sbjct: 266 YASVFSSVNSI-EFGGQLHSSAIKEGFIH-GILVGSALSTMYSRCDNVQDSYKVFEEMQE 323

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +SW ++V+ +A +    +A   F  M L   +P   S    L+  +R   +  GK++
Sbjct: 324 RDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRPECLLKGKEV 383

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG+  ++  +  +  +      MY KC  ++++  +F++ P +     +S+++    +G 
Sbjct: 384 HGHTLRVYGE--TTFINDCFISMYSKCQGVQTARRIFDATPRKDQVMWSSMISGYATNGC 441

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNI 452
            ++A+ +F  MV   I +D    S+ L     S  A++     C+ LH  AIK+G  S+ 
Sbjct: 442 GEEAISLFQLMVAASIRIDSYICSSIL-----SLCADIARPFYCKPLHGYAIKAGILSDQ 496

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           +VS SL+  YSR G+++ S +VF++I  P++V +T+I++GY+++G  + AL M ++M+Q 
Sbjct: 497 SVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQL 556

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD V  + VL+ C+ +G+V++G   FNSM++ YG++ + QHY CM+D+LGR+G L +
Sbjct: 557 GVRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAE 616

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A+  +   P   D M+WS+LL +CRVH + ++GR V N + E    D   ++ +SN  + 
Sbjct: 617 AKYFVDSMPMKPDLMVWSTLLAACRVHDDTVLGRFVENKIRE-GNYDSGSFATLSNILAN 675

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLI 660
            G++E   +IR+T   + + ++ G S++
Sbjct: 676 SGDWEEVARIRKT--MKGVNKEPGWSMV 701



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 132/569 (23%), Positives = 261/569 (45%), Gaps = 46/569 (8%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D   KSG L  A ++F +      V +N  +SG  +      A+ ++ +MV    + ++
Sbjct: 2   VDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPNS 61

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T+S  LS C+     + G  +H  VL      ++++G+ LV++Y + G    A+  F  
Sbjct: 62  FTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMGAAMREFWR 121

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P RN+ +W   +  F +   P   + +  +M   GV  N  +   ++  C+   ++ E 
Sbjct: 122 MPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACAQMSMVREA 181

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYA 289
            Q+H  V+K   + ++  V  AL+  Y+  G +  ++K F+    V +   W++ +S  +
Sbjct: 182 SQIHGMVLKTE-MYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFISGVS 240

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           ++ L+  +++L  RM     RP+ + +       S   ++ FG Q+H    K GF HG +
Sbjct: 241 NHSLL-RSVQLLRRMFHQGLRPNDKCYASVF---SSVNSIEFGGQLHSSAIKEGFIHG-I 295

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V SAL+ MY +C+ ++ S  VFE    R      +++      G+  +A   F  M+ +
Sbjct: 296 LVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRNMILD 355

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRL----LHCCAIKSGFESNIAVSCSLMDAYSRC 465
           G   D V+L+  L A       N   C L    +H   ++   E+     C  +  YS+C
Sbjct: 356 GFKPDHVSLTAILSA------CNRPECLLKGKEVHGHTLRVYGETTFINDC-FISMYSKC 408

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
             ++ + ++F+  P  + V ++S+++GY+ NG G EA+ + ++M+   +  D      +L
Sbjct: 409 QGVQTARRIFDATPRKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYICSSIL 468

Query: 526 AGCN-----------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           + C            H   +K G L            +D+   S ++ +  R+G +D + 
Sbjct: 469 SLCADIARPFYCKPLHGYAIKAGIL------------SDQSVSSSLVKVYSRSGNMDDSR 516

Query: 575 ELLQQ--TPGGGDCMMWSSLLRSCRVHGN 601
           ++  +   P   D + W++++     HG+
Sbjct: 517 KVFDEISVP---DLVAWTTIIDGYAQHGS 542



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 117/452 (25%), Positives = 201/452 (44%), Gaps = 14/452 (3%)

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           +VDL  + G    AL +F +    +   WN  +            + M+  M     EPN
Sbjct: 1   MVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMVWGSCEPN 60

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             ++   +  C+ G  L  G+ +H  V++    + ++FV  +LV+ Y+ CG +  A + F
Sbjct: 61  SFTYSGALSACAAGEELSVGRAVHGLVLRRD-PEYDVFVGTSLVNMYAKCGDMGAAMREF 119

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF--VEFLNFASRTGN 328
             +PV +V+SW + ++ +   D    A+ L    ++ R   +I  +     L   ++   
Sbjct: 120 WRMPVRNVVSWTTAIAGFVQDDEPVSAMLLL--REMVRNGVAINKYTATSILLACAQMSM 177

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           V    QIHG V K       V V+ AL   Y     IE S  VFE A   S     S   
Sbjct: 178 VREASQIHGMVLKTEMYLDCV-VKEALISTYTNFGFIELSEKVFEEAGTVSNRSIWSAFI 236

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
           S + + ++  +V++   M  +G+  ++   ++   +++   S   G    LH  AIK GF
Sbjct: 237 SGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVN---SIEFGG--QLHSSAIKEGF 291

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
              I V  +L   YSRC +++ S++VFE++   + V +T+++ G++ +G   EA      
Sbjct: 292 IHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFLTFRN 351

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           MI  G  PD V+   +L+ CN    + +G+ V      VYG         C I M  +  
Sbjct: 352 MILDGFKPDHVSLTAILSACNRPECLLKGKEVHGHTLRVYGETTFIN--DCFISMYSKCQ 409

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            +  A  +   TP   D +MWSS++     +G
Sbjct: 410 GVQTARRIFDATP-RKDQVMWSSMISGYATNG 440



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 47/176 (26%), Positives = 82/176 (46%), Gaps = 10/176 (5%)

Query: 20  CTSIVPLSSSLLLDSYCQPNPQLNIYS--------SNRTIDDFVKSGHLNSAKKLFDEMP 71
           C+SI+ L + +    YC+P     I +        S+  +  + +SG+++ ++K+FDE+ 
Sbjct: 464 CSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEIS 523

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
             D+V +  +I G  +    + AL ++D MV  G++       SVLS CS  G   +G  
Sbjct: 524 VPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFN 583

Query: 132 -IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRA 185
             +    + G    L     +VDL  R G    A    D +P + +L  W+ +L A
Sbjct: 584 YFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLLAA 639


>gi|413923916|gb|AFW63848.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1174

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 176/622 (28%), Positives = 314/622 (50%), Gaps = 11/622 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
            + ++  +  G L  A+++FD +PA D   YN LI           A+ LY  M+   + 
Sbjct: 38  QQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVA 97

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TF  VL  CS       G  IH    + G   +L++ + L+DLY+R      A ++
Sbjct: 98  PNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNV 157

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGML 226
           F ++P R++  WN ML  +         +     M+  G + PN  +   ++   +    
Sbjct: 158 FAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGA 217

Query: 227 LDEGKQLHSHVIK--LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           L +G  +H++ ++  L   +  + +  AL+D Y+ C  L+ A + F  +PV + ++W+++
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 285 VSIYADYDLIFDALELFFRM---QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +  +   D + +A  LF  M    LC    S  S    L   +   +++ G Q+H  + K
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFL--SATSVASALRVCASLADLHMGTQLHALIAK 335

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G  H  +   ++L  MY K  +I  +   F+    +      +L++  + +G  ++A  
Sbjct: 336 SGI-HADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFL 394

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M    +  D  T+ + + A S  A+   G C   H   I  G     ++  SL+D 
Sbjct: 395 VFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS--HGSVIIRGLALETSICNSLIDM 452

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG I+LS QVF+K+P+ +VV + +++ GY  +G+G+EA  +   M  +G  PD VTF
Sbjct: 453 YAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTF 512

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           +C++A C+HSG+V EG+  F++M   YGI    +HY CM+D+L R G+LD+A + +Q  P
Sbjct: 513 ICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMP 572

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  +W +LL +CR+H N  +G++V+ I+ +L P     +  +SN +S  G F+ + +
Sbjct: 573 LKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAE 632

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R     +   +  G+S IE+N
Sbjct: 633 VRIIQKVKGFKKSPGYSWIEIN 654



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 217/485 (44%), Gaps = 9/485 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSS-LLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML  ++ P   T   +   C+++V L +   +           +++ S   ID +++   
Sbjct: 91  MLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCAR 150

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESASTFSSVLS 118
              A+ +F +MP RD+V +N +++G         A+    +M  H G++ +AST  S+L 
Sbjct: 151 FGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLP 210

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLN---LYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           + +  G   +G  IH   L      N   + IG+ L+D+Y +    V A  +F  +P RN
Sbjct: 211 LLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRN 270

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLH 234
             TW+ ++  F    R  E   ++  M  EG+   +  S    +R C+    L  G QLH
Sbjct: 271 DVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH 330

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           + + K G +  ++  +N+L+  Y+  G + EA   FD I V D IS+ +++S        
Sbjct: 331 ALIAKSG-IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKA 389

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +A  +F +MQ C   P I + V  +   S    +  GK  HG V   G       + ++
Sbjct: 390 EEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLAL-ETSICNS 448

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L DMY KC  I+ S  VF+  P R +   N+++      G  K+A  +F  M ++G   D
Sbjct: 449 LIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPD 508

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           +VT    + A S S     G          K G    +     ++D  +R G ++ ++Q 
Sbjct: 509 DVTFICLIAACSHSGLVTEGK-HWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQF 567

Query: 475 FEKIP 479
            + +P
Sbjct: 568 IQSMP 572



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 124/255 (48%), Gaps = 4/255 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +SN  +  + K+G +N A   FDE+  +D ++Y  L+SGC +    ++A  ++ +M 
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQ 400

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  ++   +T  S++  CS+      G   H  V+  G  L   I + L+D+Y + G   
Sbjct: 401 ACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKID 460

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  +FD++P R++ +WN M+  +       E   ++  MK +G  P+ ++F  ++  CS
Sbjct: 461 LSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS 520

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              L+ EGK     +     +   +     +VD  +  G L EA +    +P+  DV  W
Sbjct: 521 HSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVW 580

Query: 282 NSIVS---IYADYDL 293
            +++    I+ + DL
Sbjct: 581 GALLGACRIHKNIDL 595


>gi|77552605|gb|ABA95402.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 1000

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/592 (29%), Positives = 319/592 (53%), Gaps = 5/592 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q  +  +N  I  F   G ++ A+KLFD M   D +++N +IS         +   ++ +
Sbjct: 177 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 236

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M  HG++  A+T  S++SVC+++  ++ G  IH   L      ++ + + LV++Y   G 
Sbjct: 237 MRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGK 296

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LF  +  R+L +WN M+ ++ +     + L+   ++      PN L+F   +  
Sbjct: 297 LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGA 356

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS    L +GK +H+ V++L  +  N+ V N+L+  Y  C S+ +A+K F  +P  D++S
Sbjct: 357 CSSPGALIDGKMVHAIVLQLS-LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVS 415

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL-NFASRTGNVYFGKQIHGYV 339
           +N ++  YA  +    A+++F  M+    +P+  + +    +FAS      +G+ +H Y+
Sbjct: 416 YNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYI 475

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + GF     +V ++L  MY KC  +ESS  +F S   +++   N+++ + +  G+ ++A
Sbjct: 476 IRTGF-LSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEA 534

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +++F  M   G  LD V L+  L   S ++ A+L     LH   +KSG +S+  V  + M
Sbjct: 535 LKLFIDMQHAGNKLDRVCLAECLS--SCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAM 592

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +CG ++   QV          C+ ++++GY++ G  +EA +  + M+  G  PD V
Sbjct: 593 DMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYV 652

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ +L+ C+H+G+V +G   +NSM S +G+    +H  C++D+LGR G   +AE+ +++
Sbjct: 653 TFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEE 712

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
            P   + ++W SLL S R H N  IGR+ A  L+EL+P D + Y  +SN Y+
Sbjct: 713 MPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYA 764



 Score =  214 bits (544), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/541 (27%), Positives = 272/541 (50%), Gaps = 11/541 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y     +  +   G ++ A++LF EMP R++V++  L+       + ++AL  Y +M 
Sbjct: 78  NVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMR 137

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +A+ F++V+S+C +      G+Q+  +V+  G    + + + L+ ++  +G   
Sbjct: 138 RDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVH 197

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD + E +  +WN M+  +       +   +++ M+  G+ P+  + C ++  C+
Sbjct: 198 DAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA 257

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  G  +HS  ++   +D ++ V NALV+ YSA G L +A+  F  +   D+ISWN
Sbjct: 258 SSDHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWN 316

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S Y       DAL+   ++    + P+  +F   L   S  G +  GK +H  V +L
Sbjct: 317 TMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQL 376

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
                ++ V ++L  MYGKCN +E +  VF+S P   +   N L+       +   A+++
Sbjct: 377 SLQR-NLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQV 435

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           F +M   GI  + +T+     + + S    N G  R LH   I++GF S+  V+ SL+  
Sbjct: 436 FSWMRSAGIKPNYITMINIHGSFASSNDLHNYG--RPLHAYIIRTGFLSDEYVANSLITM 493

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG++E S  +F  I + N+V + +I+    + G G EAL +   M   G   D+V  
Sbjct: 494 YAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCL 553

Query: 522 LCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
              L+ C     ++EG QL    MKS  G+D+D    +  +DM G+ G +D   E+LQ  
Sbjct: 554 AECLSSCASLASLEEGMQLHGLGMKS--GLDSDSYVVNAAMDMYGKCGKMD---EMLQVV 608

Query: 581 P 581
           P
Sbjct: 609 P 609



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 123/461 (26%), Positives = 220/461 (47%), Gaps = 13/461 (2%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R   T+   +SGC +      A  +   M   G+  S    +S+++ C   G   EG
Sbjct: 1   MADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRG-RDEG 59

Query: 130 IQ----IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
           I     IH      G   N+YIG+ L+ LY   G    A  LF E+PERN+ +W  ++ A
Sbjct: 60  IACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVA 119

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWV 243
                  +E LR Y +M+ +GV  N  +F  +V  C  G L +E  G Q+ S VI  G +
Sbjct: 120 LSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLC--GSLENEVPGLQVASQVIVSG-L 176

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
              + VAN+L+  +   G + +A+K FD +   D ISWN+++S+Y+   +      +F  
Sbjct: 177 QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 236

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M+    RP   +    ++  + + +   G  IH    +   D  SV V +AL +MY    
Sbjct: 237 MRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLD-SSVTVINALVNMYSAAG 295

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +  +  +F +   R L   N++++S + + N  DA++  G +       + +T S+ L 
Sbjct: 296 KLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALG 355

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A   S+   L   +++H   ++   + N+ V  SL+  Y +C  +E + +VF+ +P+ ++
Sbjct: 356 A--CSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDI 413

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           V +  ++ GY+    G +A+ +   M   G+ P+ +T + +
Sbjct: 414 VSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 454


>gi|222616424|gb|EEE52556.1| hypothetical protein OsJ_34807 [Oryza sativa Japonica Group]
          Length = 1215

 Score =  296 bits (757), Expect = 3e-77,   Method: Compositional matrix adjust.
 Identities = 175/592 (29%), Positives = 319/592 (53%), Gaps = 5/592 (0%)

Query: 41   QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            Q  +  +N  I  F   G ++ A+KLFD M   D +++N +IS         +   ++ +
Sbjct: 479  QNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSD 538

Query: 101  MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
            M  HG++  A+T  S++SVC+++  ++ G  IH   L      ++ + + LV++Y   G 
Sbjct: 539  MRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGK 598

Query: 161  SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
               A  LF  +  R+L +WN M+ ++ +     + L+   ++      PN L+F   +  
Sbjct: 599  LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGA 658

Query: 221  CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
            CS    L +GK +H+ V++L  +  N+ V N+L+  Y  C S+ +A+K F  +P  D++S
Sbjct: 659  CSSPGALIDGKMVHAIVLQLS-LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVS 717

Query: 281  WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL-NFASRTGNVYFGKQIHGYV 339
            +N ++  YA  +    A+++F  M+    +P+  + +    +FAS      +G+ +H Y+
Sbjct: 718  YNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINIHGSFASSNDLHNYGRPLHAYI 777

Query: 340  TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             + GF     +V ++L  MY KC  +ESS  +F S   +++   N+++ + +  G+ ++A
Sbjct: 778  IRTGF-LSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEA 836

Query: 400  VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
            +++F  M   G  LD V L+  L   S ++ A+L     LH   +KSG +S+  V  + M
Sbjct: 837  LKLFIDMQHAGNKLDRVCLAECLS--SCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAM 894

Query: 460  DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            D Y +CG ++   QV          C+ ++++GY++ G  +EA +  + M+  G  PD V
Sbjct: 895  DMYGKCGKMDEMLQVVPDQAIRPQQCWNTLISGYAKYGYFKEAEETFKQMVATGRKPDYV 954

Query: 520  TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            TF+ +L+ C+H+G+V +G   +NSM S +G+    +H  C++D+LGR G   +AE+ +++
Sbjct: 955  TFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAEKFIEE 1014

Query: 580  TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
             P   + ++W SLL S R H N  IGR+ A  L+EL+P D + Y  +SN Y+
Sbjct: 1015 MPVLPNDLIWRSLLSSSRTHKNLEIGRKTAKKLLELDPFDDSAYVLLSNLYA 1066



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 151/541 (27%), Positives = 272/541 (50%), Gaps = 11/541 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y     +  +   G ++ A++LF EMP R++V++  L+       + ++AL  Y +M 
Sbjct: 380 NVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTALMVALSSNGYLEEALRAYRQMR 439

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +A+ F++V+S+C +      G+Q+  +V+  G    + + + L+ ++  +G   
Sbjct: 440 RDGVPCNANAFATVVSLCGSLENEVPGLQVASQVIVSGLQNQVSVANSLITMFGNLGRVH 499

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD + E +  +WN M+  +       +   +++ M+  G+ P+  + C ++  C+
Sbjct: 500 DAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA 559

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  G  +HS  ++   +D ++ V NALV+ YSA G L +A+  F  +   D+ISWN
Sbjct: 560 SSDHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWN 618

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S Y       DAL+   ++    + P+  +F   L   S  G +  GK +H  V +L
Sbjct: 619 TMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFSSALGACSSPGALIDGKMVHAIVLQL 678

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
                ++ V ++L  MYGKCN +E +  VF+S P   +   N L+       +   A+++
Sbjct: 679 SLQR-NLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDIVSYNVLIGGYAVLEDGTKAMQV 737

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           F +M   GI  + +T+     + + S    N G  R LH   I++GF S+  V+ SL+  
Sbjct: 738 FSWMRSAGIKPNYITMINIHGSFASSNDLHNYG--RPLHAYIIRTGFLSDEYVANSLITM 795

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG++E S  +F  I + N+V + +I+    + G G EAL +   M   G   D+V  
Sbjct: 796 YAKCGNLESSTNIFNSITNKNIVSWNAIIAANVQLGHGEEALKLFIDMQHAGNKLDRVCL 855

Query: 522 LCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
              L+ C     ++EG QL    MKS  G+D+D    +  +DM G+ G +D   E+LQ  
Sbjct: 856 AECLSSCASLASLEEGMQLHGLGMKS--GLDSDSYVVNAAMDMYGKCGKMD---EMLQVV 910

Query: 581 P 581
           P
Sbjct: 911 P 911



 Score =  178 bits (452), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 127/465 (27%), Positives = 225/465 (48%), Gaps = 13/465 (2%)

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           LFDEM  R   T+   +SGC +     +A  +   M   G+  S    +S+++ C   G 
Sbjct: 299 LFDEMADRTPSTWYTAVSGCVRCGSHGKAFEMLRGMREPGVPLSGFALASLVTACERRG- 357

Query: 126 YTEGIQ----IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
             EGI     IH      G   N+YIG+ L+ LY   G    A  LF E+PERN+ +W  
Sbjct: 358 RDEGIACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDAQRLFWEMPERNVVSWTA 417

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVIK 239
           ++ A       +E LR Y +M+ +GV  N  +F  +V  C  G L +E  G Q+ S VI 
Sbjct: 418 LMVALSSNGYLEEALRAYRQMRRDGVPCNANAFATVVSLC--GSLENEVPGLQVASQVIV 475

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +   + VAN+L+  +   G + +A+K FD +   D ISWN+++S+Y+   +      
Sbjct: 476 SG-LQNQVSVANSLITMFGNLGRVHDAEKLFDRMEEHDTISWNAMISMYSHQGICSKCFL 534

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  M+    RP   +    ++  + + +   G  IH    +   D  SV V +AL +MY
Sbjct: 535 VFSDMRHHGLRPDATTLCSLMSVCASSDHFSHGSGIHSLCLRSSLD-SSVTVINALVNMY 593

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
                +  +  +F +   R L   N++++S + + N  DA++  G +       + +T S
Sbjct: 594 SAAGKLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNESPNHLTFS 653

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A   S+   L   +++H   ++   + N+ V  SL+  Y +C  +E + +VF+ +P
Sbjct: 654 SALGA--CSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMP 711

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           + ++V +  ++ GY+    G +A+ +   M   G+ P+ +T + +
Sbjct: 712 THDIVSYNVLIGGYAVLEDGTKAMQVFSWMRSAGIKPNYITMINI 756



 Score = 41.2 bits (95), Expect = 1.8,   Method: Compositional matrix adjust.
 Identities = 32/110 (29%), Positives = 46/110 (41%), Gaps = 10/110 (9%)

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           LFDEM  R   T+   +SGC +      A  +   M   G+  S    +S+++ C   G 
Sbjct: 76  LFDEMADRTPSTWYTAVSGCVRCGRDGTAFEMLRGMRERGVPLSGFALASLVTACERRG- 134

Query: 126 YTEGI----QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
             EGI     IH      G   N+YIG  L+ L     P +R  +  D +
Sbjct: 135 RDEGIACGAAIHALTHRAGLMGNVYIGRALLHL-----PQIRRREALDAV 179


>gi|15233590|ref|NP_193861.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75207660|sp|Q9STE1.1|PP333_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g21300
 gi|3402749|emb|CAA20195.1| putative protein [Arabidopsis thaliana]
 gi|7268926|emb|CAB79129.1| putative protein [Arabidopsis thaliana]
 gi|332659037|gb|AEE84437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 857

 Score =  296 bits (757), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 185/665 (27%), Positives = 339/665 (50%), Gaps = 6/665 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSS-SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P V T   L   C ++        L D+        N + ++  I  +++ G 
Sbjct: 129 MLCFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGK 188

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++   KLFD +  +D V +N++++G  K       +  +  M    I  +A TF  VLSV
Sbjct: 189 IDVPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSV 248

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G+Q+H  V+  G      I + L+ +Y + G    A  LF  +   +  TW
Sbjct: 249 CASKLLIDLGVQLHGLVVVSGVDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTW 308

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + +    +E L  + +M + GV P+ ++F  ++   S    L+  KQ+H ++++
Sbjct: 309 NCMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMR 368

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              + ++IF+ +AL+D Y  C  +  A+  F      DV+ + +++S Y    L  D+LE
Sbjct: 369 HS-ISLDIFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLE 427

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  +   +  P+  + V  L        +  G+++HG++ K GFD+   ++  A+ DMY
Sbjct: 428 MFRWLVKVKISPNEITLVSILPVIGILLALKLGRELHGFIIKKGFDN-RCNIGCAVIDMY 486

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  +  +  +FE    R +   NS++T    S N   A+++F  M   GI  D V++S
Sbjct: 487 AKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVSIS 546

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A +   S + G  + +H   IK    S++    +L+D Y++CG+++ +  VF+ + 
Sbjct: 547 AALSACANLPSESFG--KAIHGFMIKHSLASDVYSESTLIDMYAKCGNLKAAMNVFKTMK 604

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR-GLIPDKVTFLCVLAGCNHSGMVKEGQ 538
             N+V + SI+     +G  +++L +   M+++ G+ PD++TFL +++ C H G V EG 
Sbjct: 605 EKNIVSWNSIIAACGNHGKLKDSLCLFHEMVEKSGIRPDQITFLEIISSCCHVGDVDEGV 664

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F SM   YGI   ++HY+C++D+ GRAG L +A E ++  P   D  +W +LL +CR+
Sbjct: 665 RFFRSMTEDYGIQPQQEHYACVVDLFGRAGRLTEAYETVKSMPFPPDAGVWGTLLGACRL 724

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H N  +    ++ LM+L+P +   Y  +SN ++   E+E   ++R     R++ +  G+S
Sbjct: 725 HKNVELAEVASSKLMDLDPSNSGYYVLISNAHANAREWESVTKVRSLMKEREVQKIPGYS 784

Query: 659 LIEVN 663
            IE+N
Sbjct: 785 WIEIN 789



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 145/561 (25%), Positives = 273/561 (48%), Gaps = 12/561 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPAR--DMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           Y+  R +  +   G  +   K+F  +  R   +  +N +IS   +     QAL  Y +M+
Sbjct: 71  YTDERILGMYAMCGSFSDCGKMFYRLDLRRSSIRPWNSIISSFVRNGLLNQALAFYFKML 130

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+    STF  ++  C     +     +   V SLG   N ++ S L+  Y+  G   
Sbjct: 131 CFGVSPDVSTFPCLVKACVALKNFKGIDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKID 190

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               LFD + +++   WN+ML  + +    D V++ ++ M+ + + PN ++F  ++  C+
Sbjct: 191 VPSKLFDRVLQKDCVIWNVMLNGYAKCGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCA 250

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
             +L+D G QLH  V+  G VD    + N+L+  YS CG   +A K F  +   D ++WN
Sbjct: 251 SKLLIDLGVQLHGLVVVSG-VDFEGSIKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWN 309

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK- 341
            ++S Y    L+ ++L  F+ M      P   +F   L   S+  N+ + KQIH Y+ + 
Sbjct: 310 CMISGYVQSGLMEESLTFFYEMISSGVLPDAITFSSLLPSVSKFENLEYCKQIHCYIMRH 369

Query: 342 -LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            +  D   + + SAL D Y KC  +  +  +F       +    ++++  LH+G   D++
Sbjct: 370 SISLD---IFLTSALIDAYFKCRGVSMAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSL 426

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           EMF ++V   I  +E+TL + L  + +  +  LG  R LH   IK GF++   + C+++D
Sbjct: 427 EMFRWLVKVKISPNEITLVSILPVIGILLALKLG--RELHGFIIKKGFDNRCNIGCAVID 484

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG + L++++FE++   ++V + S++   +++     A+D+   M   G+  D V+
Sbjct: 485 MYAKCGRMNLAYEIFERLSKRDIVSWNSMITRCAQSDNPSAAIDIFRQMGVSGICYDCVS 544

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
               L+ C +      G+ +   M   + + +D    S +IDM  + G L  A  +  +T
Sbjct: 545 ISAALSACANLPSESFGKAIHGFMIK-HSLASDVYSESTLIDMYAKCGNLKAAMNVF-KT 602

Query: 581 PGGGDCMMWSSLLRSCRVHGN 601
               + + W+S++ +C  HG 
Sbjct: 603 MKEKNIVSWNSIIAACGNHGK 623



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 121/493 (24%), Positives = 238/493 (48%), Gaps = 12/493 (2%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            S +L  CSN     +G Q+H  ++      + Y    ++ +Y   G       +F  L 
Sbjct: 38  LSLLLQACSNPNLLRQGKQVHAFLIVNSISGDSYTDERILGMYAMCGSFSDCGKMFYRLD 97

Query: 173 ER--NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            R  ++  WN ++ +F      ++ L  Y KM   GV P+  +F  +V+ C + +   +G
Sbjct: 98  LRRSSIRPWNSIISSFVRNGLLNQALAFYFKMLCFGVSPDVSTFPCLVKAC-VALKNFKG 156

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
               S  +    +D N FVA++L+  Y   G +    K FD +   D + WN +++ YA 
Sbjct: 157 IDFLSDTVSSLGMDCNEFVASSLIKAYLEYGKIDVPSKLFDRVLQKDCVIWNVMLNGYAK 216

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD-HGSV 349
              +   ++ F  M++ +  P+  +F   L+  +    +  G Q+HG V   G D  GS 
Sbjct: 217 CGALDSVIKGFSVMRMDQISPNAVTFDCVLSVCASKLLIDLGVQLHGLVVVSGVDFEGS- 275

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            ++++L  MY KC   + +  +F           N +++  + SG +++++  F  M+  
Sbjct: 276 -IKNSLLSMYSKCGRFDDASKLFRMMSRADTVTWNCMISGYVQSGLMEESLTFFYEMISS 334

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+  D +T S+ L   SVS   NL  C+ +HC  ++     +I ++ +L+DAY +C  + 
Sbjct: 335 GVLPDAITFSSLLP--SVSKFENLEYCKQIHCYIMRHSISLDIFLTSALIDAYFKCRGVS 392

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           ++  +F +  S +VV FT++++GY  NG+  ++L+M   +++  + P+++T + +L    
Sbjct: 393 MAQNIFSQCNSVDVVVFTAMISGYLHNGLYIDSLEMFRWLVKVKISPNEITLVSILPVIG 452

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQQTPGGGDCMM 588
               +K G+ +   +    G D +R +  C +IDM  + G ++ A E+ ++     D + 
Sbjct: 453 ILLALKLGRELHGFIIK-KGFD-NRCNIGCAVIDMYAKCGRMNLAYEIFERL-SKRDIVS 509

Query: 589 WSSLLRSCRVHGN 601
           W+S++  C    N
Sbjct: 510 WNSMITRCAQSDN 522


>gi|357475445|ref|XP_003608008.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509063|gb|AES90205.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1183

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 182/610 (29%), Positives = 325/610 (53%), Gaps = 7/610 (1%)

Query: 54   FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
            +V  G L   +K+FD++    +  +NLL+S   K  + ++++ L+ +M   G+  +  TF
Sbjct: 414  YVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTF 473

Query: 114  SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            + VL   +  G   E  ++H  VL LGFG N  + + L+  Y + G    A +LFDEL E
Sbjct: 474  TCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNSLIAAYFKFGGVESAHNLFDELSE 533

Query: 174  RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC-YMVRGCSIGMLLDEGKQ 232
             ++ +WN M+            L ++ +M   GVE +  +    +V   +IG L   G+ 
Sbjct: 534  PDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNL-SLGRA 592

Query: 233  LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            LH   +K  + +  +F +N L+D YS CG+L  A + F  +    ++SW S ++ Y    
Sbjct: 593  LHGFGVKACFSEEVVF-SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREG 651

Query: 293  LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            L  DA+ LF  MQ    RP I +    ++  + + ++  G+ +H YV K G    ++ V 
Sbjct: 652  LYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMG-SNLPVT 710

Query: 353  SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
            +AL +MY KC  +E +  VF   P + +   N+++     +    +A+E+F  M  +   
Sbjct: 711  NALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FK 769

Query: 413  LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
             D++T++  L A +  A+ + G  R +H   ++ G+ S++ V+C+L+D Y++CG + L+ 
Sbjct: 770  PDDITMACVLPACAGLAALDKG--REIHGHILRRGYFSDLHVACALVDMYAKCGLLVLAQ 827

Query: 473  QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
             +F+ IP  +++ +T ++ GY  +G G EA+     M   G+ PD+ +F  +L  C+HSG
Sbjct: 828  LLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSG 887

Query: 533  MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            ++ EG   FNSM++  G++   +HY+C++D+L R G L KA + ++  P   D  +W  L
Sbjct: 888  LLNEGWKFFNSMRNECGVEPKLEHYACVVDLLARMGNLSKAYKFIESMPIKPDTTIWGVL 947

Query: 593  LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
            L  CR+H +  +  +VA  + ELEP +   Y  ++N Y+E  ++E   ++R+    R   
Sbjct: 948  LSGCRIHHDVKLAEKVAEHIFELEPDNTRYYVVLANVYAEAEKWEEVKKLRKRMQKRGFK 1007

Query: 653  RDIGHSLIEV 662
            ++ G S IEV
Sbjct: 1008 QNPGCSWIEV 1017



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 144/528 (27%), Positives = 268/528 (50%), Gaps = 14/528 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +++ SVL +C+      +G ++H  ++S G  ++  +G+ LV +Y+  G  V+   +FD+
Sbjct: 370 NSYCSVLQLCAEKKSLEDGKRVHSVIISNGISIDEALGAKLVFMYVNCGDLVQGRKIFDK 429

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +    +  WNL++  + ++    E + ++ KM+  GV  N  +F  +++  +    + E 
Sbjct: 430 IMNDKVFLWNLLMSEYAKIGNFRESVSLFKKMQKLGVVGNCYTFTCVLKCFAALGKVKEC 489

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++H +V+KLG+   N  V N+L+  Y   G +  A   FD +   DV+SWNS+++    
Sbjct: 490 KRVHGYVLKLGF-GSNTAVVNSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVV 548

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                + LE+F +M +      + + V  L   +  GN+  G+ +HG+  K  F    V 
Sbjct: 549 NGFSGNGLEIFIQMLILGVEVDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSE-EVV 607

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
             + L DMY KC  +  +  VF      ++    S + + +  G   DA+ +F  M  +G
Sbjct: 608 FSNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKG 667

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D  T+++ + A + S+S + G  R +H   IK+G  SN+ V+ +L++ Y++CG +E 
Sbjct: 668 VRPDIYTVTSIVHACACSSSLDKG--RDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEE 725

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +  VF KIP  ++V + +++ GYS+N +  EAL++   M Q+   PD +T  CVL  C  
Sbjct: 726 ARLVFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDM-QKQFKPDDITMACVLPACAG 784

Query: 531 SGMVKEGQLVFNS-MKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQQTPGGGDCMM 588
              + +G+ +    ++  Y  D    H +C ++DM  + G+L  A+ L    P   D + 
Sbjct: 785 LAALDKGREIHGHILRRGYFSDL---HVACALVDMYAKCGLLVLAQLLFDMIP-KKDLIS 840

Query: 589 WSSLLRSCRVH--GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           W+ ++    +H  GNE I       +  +EP D + +S + N  S  G
Sbjct: 841 WTVMIAGYGMHGFGNEAISTFNEMRIAGIEP-DESSFSVILNACSHSG 887



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 130/480 (27%), Positives = 241/480 (50%), Gaps = 7/480 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + K G + SA  LFDE+   D+V++N +I+GC         L ++ +M+  G++
Sbjct: 509 NSLIAAYFKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVE 568

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
              +T  SVL   +N G  + G  +H   +   F   +   + L+D+Y + G    A ++
Sbjct: 569 VDLTTLVSVLVAWANIGNLSLGRALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEV 628

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++ +  + +W   + A+       + + ++++M+++GV P+  +   +V  C+    L
Sbjct: 629 FVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSL 688

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           D+G+ +HS+VIK G +  N+ V NAL++ Y+ CGS+ EA+  F  IPV D++SWN+++  
Sbjct: 689 DKGRDVHSYVIKNG-MGSNLPVTNALINMYAKCGSVEEARLVFSKIPVKDIVSWNTMIGG 747

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+   L  +ALELF  MQ  + +P   +    L   +    +  G++IHG++ + G+   
Sbjct: 748 YSQNSLPNEALELFLDMQK-QFKPDDITMACVLPACAGLAALDKGREIHGHILRRGY-FS 805

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            +HV  AL DMY KC ++  +  +F+  P + L     ++      G   +A+  F  M 
Sbjct: 806 DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIAGYGMHGFGNEAISTFNEMR 865

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             GI  DE + S  L A S S   N G  +  +    + G E  +     ++D  +R G+
Sbjct: 866 IAGIEPDESSFSVILNACSHSGLLNEG-WKFFNSMRNECGVEPKLEHYACVVDLLARMGN 924

Query: 468 IELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +  +++  E +P  P+   +  +++G   +   + A  + E + +  L PD   +  VLA
Sbjct: 925 LSKAYKFIESMPIKPDTTIWGVLLSGCRIHHDVKLAEKVAEHIFE--LEPDNTRYYVVLA 982



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 113/414 (27%), Positives = 211/414 (50%), Gaps = 8/414 (1%)

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N  +  FCE+      + +  K K+  +  N  S+C +++ C+    L++GK++HS +I 
Sbjct: 340 NAKINKFCEMGDLRNAIELLTKSKSYELGLN--SYCSVLQLCAEKKSLEDGKRVHSVIIS 397

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G + ++  +   LV  Y  CG L++ +K FD I  D V  WN ++S YA      +++ 
Sbjct: 398 NG-ISIDEALGAKLVFMYVNCGDLVQGRKIFDKIMNDKVFLWNLLMSEYAKIGNFRESVS 456

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF +MQ      +  +F   L   +  G V   K++HGYV KLGF   +  V S L   Y
Sbjct: 457 LFKKMQKLGVVGNCYTFTCVLKCFAALGKVKECKRVHGYVLKLGFGSNTAVVNS-LIAAY 515

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K   +ES+  +F+      +   NS++   + +G   + +E+F  M+  G+ +D  TL 
Sbjct: 516 FKFGGVESAHNLFDELSEPDVVSWNSMINGCVVNGFSGNGLEIFIQMLILGVEVDLTTLV 575

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A +   + +LG  R LH   +K+ F   +  S +L+D YS+CG++  + +VF K+ 
Sbjct: 576 SVLVAWANIGNLSLG--RALHGFGVKACFSEEVVFSNTLLDMYSKCGNLNGATEVFVKMG 633

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
              +V +TS +  Y R G+  +A+ + + M  +G+ PD  T   ++  C  S  + +G+ 
Sbjct: 634 DTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGVRPDIYTVTSIVHACACSSSLDKGRD 693

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           V +S     G+ ++    + +I+M  + G +++A  +  + P   D + W++++
Sbjct: 694 V-HSYVIKNGMGSNLPVTNALINMYAKCGSVEEARLVFSKIP-VKDIVSWNTMI 745



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 81/281 (28%), Positives = 155/281 (55%), Gaps = 2/281 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  +D + K G+LN A ++F +M    +V++   I+   +      A+ L+DEM S G+
Sbjct: 609 SNTLLDMYSKCGNLNGATEVFVKMGDTTIVSWTSTIAAYVREGLYSDAIGLFDEMQSKGV 668

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           +    T +S++  C+ +    +G  +H  V+  G G NL + + L+++Y + G    A  
Sbjct: 669 RPDIYTVTSIVHACACSSSLDKGRDVHSYVIKNGMGSNLPVTNALINMYAKCGSVEEARL 728

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F ++P +++ +WN M+  + + S P+E L ++  M+ +  +P+ ++   ++  C+    
Sbjct: 729 VFSKIPVKDIVSWNTMIGGYSQNSLPNEALELFLDMQKQ-FKPDDITMACVLPACAGLAA 787

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           LD+G+++H H+++ G+   ++ VA ALVD Y+ CG L+ A+  FD IP  D+ISW  +++
Sbjct: 788 LDKGREIHGHILRRGYFS-DLHVACALVDMYAKCGLLVLAQLLFDMIPKKDLISWTVMIA 846

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
            Y  +    +A+  F  M++    P   SF   LN  S +G
Sbjct: 847 GYGMHGFGNEAISTFNEMRIAGIEPDESSFSVILNACSHSG 887


>gi|413923915|gb|AFW63847.1| hypothetical protein ZEAMMB73_561595 [Zea mays]
          Length = 1274

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 176/622 (28%), Positives = 314/622 (50%), Gaps = 11/622 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
            + ++  +  G L  A+++FD +PA D   YN LI           A+ LY  M+   + 
Sbjct: 38  QQELEQHISRGQLALARQVFDRIPAPDARAYNALIRAYSWLGPFHAAIDLYRSMLRFRVA 97

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TF  VL  CS       G  IH    + G   +L++ + L+DLY+R      A ++
Sbjct: 98  PNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCARFGPARNV 157

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGML 226
           F ++P R++  WN ML  +         +     M+  G + PN  +   ++   +    
Sbjct: 158 FAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLPLLAQHGA 217

Query: 227 LDEGKQLHSHVIK--LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           L +G  +H++ ++  L   +  + +  AL+D Y+ C  L+ A + F  +PV + ++W+++
Sbjct: 218 LFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRNDVTWSAL 277

Query: 285 VSIYADYDLIFDALELFFRM---QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +  +   D + +A  LF  M    LC    S  S    L   +   +++ G Q+H  + K
Sbjct: 278 IGGFVLCDRMTEAFNLFKDMLVEGLCFL--SATSVASALRVCASLADLHMGTQLHALIAK 335

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G  H  +   ++L  MY K  +I  +   F+    +      +L++  + +G  ++A  
Sbjct: 336 SGI-HADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFL 394

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M    +  D  T+ + + A S  A+   G C   H   I  G     ++  SL+D 
Sbjct: 395 VFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCS--HGSVIIRGLALETSICNSLIDM 452

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG I+LS QVF+K+P+ +VV + +++ GY  +G+G+EA  +   M  +G  PD VTF
Sbjct: 453 YAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTF 512

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           +C++A C+HSG+V EG+  F++M   YGI    +HY CM+D+L R G+LD+A + +Q  P
Sbjct: 513 ICLIAACSHSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMP 572

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  +W +LL +CR+H N  +G++V+ I+ +L P     +  +SN +S  G F+ + +
Sbjct: 573 LKADVRVWGALLGACRIHKNIDLGKQVSRIIQKLGPEGTGNFVLLSNIFSAAGRFDEAAE 632

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           +R     +   +  G+S IE+N
Sbjct: 633 VRIIQKVKGFKKSPGYSWIEIN 654



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 217/485 (44%), Gaps = 9/485 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSS-LLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML  ++ P   T   +   C+++V L +   +           +++ S   ID +++   
Sbjct: 91  MLRFRVAPNKYTFPFVLKACSALVDLRAGRTIHAHAAAAGLHTDLFVSTALIDLYIRCAR 150

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESASTFSSVLS 118
              A+ +F +MP RD+V +N +++G         A+    +M  H G++ +AST  S+L 
Sbjct: 151 FGPARNVFAKMPMRDVVAWNAMLAGYANHGMYHHAIAHLLDMQDHGGLRPNASTLVSLLP 210

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLN---LYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           + +  G   +G  IH   L      N   + IG+ L+D+Y +    V A  +F  +P RN
Sbjct: 211 LLAQHGALFQGTSIHAYCLRACLEQNEEQVLIGTALLDMYAKCKQLVYACRVFHGMPVRN 270

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLH 234
             TW+ ++  F    R  E   ++  M  EG+   +  S    +R C+    L  G QLH
Sbjct: 271 DVTWSALIGGFVLCDRMTEAFNLFKDMLVEGLCFLSATSVASALRVCASLADLHMGTQLH 330

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           + + K G +  ++  +N+L+  Y+  G + EA   FD I V D IS+ +++S        
Sbjct: 331 ALIAKSG-IHADLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKA 389

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +A  +F +MQ C   P I + V  +   S    +  GK  HG V   G       + ++
Sbjct: 390 EEAFLVFKKMQACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLAL-ETSICNS 448

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L DMY KC  I+ S  VF+  P R +   N+++      G  K+A  +F  M ++G   D
Sbjct: 449 LIDMYAKCGKIDLSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPD 508

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           +VT    + A S S     G          K G    +     ++D  +R G ++ ++Q 
Sbjct: 509 DVTFICLIAACSHSGLVTEGK-HWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQF 567

Query: 475 FEKIP 479
            + +P
Sbjct: 568 IQSMP 572



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 63/255 (24%), Positives = 124/255 (48%), Gaps = 4/255 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +SN  +  + K+G +N A   FDE+  +D ++Y  L+SGC +    ++A  ++ +M 
Sbjct: 341 DLTASNSLLSMYAKAGLINEATMFFDEIAVKDTISYGALLSGCVQNGKAEEAFLVFKKMQ 400

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  ++   +T  S++  CS+      G   H  V+  G  L   I + L+D+Y + G   
Sbjct: 401 ACNMEPDIATMVSLIPACSHLAALQHGKCSHGSVIIRGLALETSICNSLIDMYAKCGKID 460

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  +FD++P R++ +WN M+  +       E   ++  MK +G  P+ ++F  ++  CS
Sbjct: 461 LSRQVFDKMPARDVVSWNTMIAGYGIHGLGKEATTLFLGMKNQGFAPDDVTFICLIAACS 520

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              L+ EGK     +     +   +     +VD  +  G L EA +    +P+  DV  W
Sbjct: 521 HSGLVTEGKHWFDTMTHKYGILPRMEHYICMVDLLARGGLLDEAYQFIQSMPLKADVRVW 580

Query: 282 NSIVS---IYADYDL 293
            +++    I+ + DL
Sbjct: 581 GALLGACRIHKNIDL 595


>gi|125563707|gb|EAZ09087.1| hypothetical protein OsI_31353 [Oryza sativa Indica Group]
          Length = 810

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 184/628 (29%), Positives = 340/628 (54%), Gaps = 23/628 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P+ +++     ++ + K G + +A + F  MP R++V++   I+G  +   P  A+ L 
Sbjct: 200 DPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLL 259

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EMV +G+  +  T +S+L  C+      E  QIH  VL     L+  +   L+  Y   
Sbjct: 260 REMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNF 319

Query: 159 GPSVRALDLFDELPE-RNLATWNLMLRAFCE--LSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           G    +  +F+E     N + W+  +       L R  ++LR   +M  +G+ PN    C
Sbjct: 320 GFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLR---RMFHQGLRPN--DKC 374

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           Y     S+  + + G QLHS  IK G++   I V +AL   YS C ++ ++ K F+ +  
Sbjct: 375 YASVFSSVNSI-EFGGQLHSSAIKEGFIH-GILVGSALSTMYSRCDNVQDSYKVFEEMQE 432

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +SW ++V+ +A +    +A   F  M L   +P   S    L+  +R+  +  GK++
Sbjct: 433 RDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEV 492

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG+  ++  +  +  +      MY KC  ++++  +F++ P +     +S+++    +G 
Sbjct: 493 HGHTLRVYGE--TTFINDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGC 550

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNI 452
            ++A+ +F  MV   I +D    S+ L     S  A++     C+ LH  AIK+G  S+ 
Sbjct: 551 GEEAISLFQLMVAASIRIDSYICSSIL-----SLCADIARPFYCKPLHGYAIKAGILSDQ 605

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           +VS SL+  YSR G+++ S +VF++I  P++V +T+I++GY+++G  + AL M ++M+Q 
Sbjct: 606 SVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQL 665

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD V  + VL+ C+ +G+V++G   FNSM++ YG++ + QHY CM+D+LGR+G L +
Sbjct: 666 GVRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAE 725

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A+  +   P   D M+WS+L+ +CRVH + ++GR V N + E    D   ++ +SN  + 
Sbjct: 726 AKYFVDSMPMKPDLMVWSTLVAACRVHDDTVLGRFVENKIREGN-YDSGSFATLSNILAN 784

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLI 660
            G++E   +IR+T   + + ++ G S++
Sbjct: 785 SGDWEEVARIRKT--MKGVNKEPGWSMV 810



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/573 (23%), Positives = 264/573 (46%), Gaps = 38/573 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N Y     +D   KSG L  A ++F +      V +N  +SG  +      A+ ++ +MV
Sbjct: 103 NAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMV 162

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               + ++ T+S  LS C+     + G  +H  VL      ++++G+ LV++Y + G   
Sbjct: 163 WGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMG 222

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+  F  +P RN+ +W   +  F +   P   + +  +M   GV  N  +   ++  C+
Sbjct: 223 AAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACA 282

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISW 281
              ++ E  Q+H  V+K   + ++  V  AL+  Y+  G +  ++K F+    V +   W
Sbjct: 283 QMSMVREASQIHGMVLKTE-MYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIW 341

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++ +S  +++ L+  +++L  RM     RP+ + +       S   ++ FG Q+H    K
Sbjct: 342 SAFISGVSNHSLL-RSVQLLRRMFHQGLRPNDKCYASVF---SSVNSIEFGGQLHSSAIK 397

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF HG + V SAL+ MY +C+ ++ S  VFE    R      +++      G+  +A  
Sbjct: 398 EGFIHG-ILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFL 456

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            F  M+ +G   D V+L+  L A + S     G  + +H   ++   E+     C  +  
Sbjct: 457 TFRNMILDGFKPDHVSLTAILSACNRSECLLKG--KEVHGHTLRVYGETTFINDC-FISM 513

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+C  ++ + ++F+  P  + V ++S+++GY+ NG G EA+ + ++M+   +  D    
Sbjct: 514 YSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYIC 573

Query: 522 LCVLAGCN-----------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             +L+ C            H   +K G L            +D+   S ++ +  R+G +
Sbjct: 574 SSILSLCADIARPFYCKPLHGYAIKAGIL------------SDQSVSSSLVKVYSRSGNM 621

Query: 571 DKAEELLQQ--TPGGGDCMMWSSLLRSCRVHGN 601
           D + ++  +   P   D + W++++     HG+
Sbjct: 622 DDSRKVFDEISVP---DLVAWTTIIDGYAQHGS 651



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 211/472 (44%), Gaps = 14/472 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q++C     G   N Y+ + +VDL  + G    AL +F +    +   WN  +       
Sbjct: 90  QVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNG 149

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                + M+  M     EPN  ++   +  C+ G  L  G+ +H  V++    + ++FV 
Sbjct: 150 EGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRD-PEYDVFVG 208

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +LV+ Y+ CG +  A + F  +PV +V+SW + ++ +   D    A+ L    ++ R  
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLL--REMVRNG 266

Query: 311 PSIRSF--VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +I  +     L   ++   V    QIHG V K       V V+ AL   Y     IE S
Sbjct: 267 VAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCV-VKEALISTYTNFGFIELS 325

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VFE A   S     S   S + + ++  +V++   M  +G+  ++   ++   +++  
Sbjct: 326 EKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVN-- 383

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            S   G    LH  AIK GF   I V  +L   YSRC +++ S++VFE++   + V +T+
Sbjct: 384 -SIEFGG--QLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTA 440

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ G++ +G   EA      MI  G  PD V+   +L+ CN S  + +G+ V      VY
Sbjct: 441 MVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEVHGHTLRVY 500

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           G         C I M  +   +  A  +   TP   D +MWSS++     +G
Sbjct: 501 GETTFIN--DCFISMYSKCQGVQTARRIFDATP-CKDQVMWSSMISGYATNG 549



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 10/176 (5%)

Query: 20  CTSIVPLSSSLLLDSYCQPNPQLNIYS--------SNRTIDDFVKSGHLNSAKKLFDEMP 71
           C+SI+ L + +    YC+P     I +        S+  +  + +SG+++ ++K+FDE+ 
Sbjct: 573 CSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEIS 632

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
             D+V +  +I G  +    + AL ++D MV  G++       SVLS CS  G   +G  
Sbjct: 633 VPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFN 692

Query: 132 -IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRA 185
             +    + G    L     +VDL  R G    A    D +P + +L  W+ ++ A
Sbjct: 693 YFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLVAA 748


>gi|46403989|gb|AAS93059.1| pentatricopeptide repeat protein [Oryza sativa Japonica Group]
          Length = 810

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 184/628 (29%), Positives = 340/628 (54%), Gaps = 23/628 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P+ +++     ++ + K G + +A + F  MP R++V++   I+G  +   P  A+ L 
Sbjct: 200 DPEYDVFVGTSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLL 259

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EMV +G+  +  T +S+L  C+      E  QIH  VL     L+  +   L+  Y   
Sbjct: 260 REMVRNGVAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCVVKEALISTYTNF 319

Query: 159 GPSVRALDLFDELPE-RNLATWNLMLRAFCE--LSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           G    +  +F+E     N + W+  +       L R  ++LR   +M  +G+ PN    C
Sbjct: 320 GFIELSEKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLR---RMFHQGLRPN--DKC 374

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           Y     S+  + + G QLHS  IK G++   I V +AL   YS C ++ ++ K F+ +  
Sbjct: 375 YASVFSSVNSI-EFGGQLHSSAIKEGFIH-GILVGSALSTMYSRCDNVQDSYKVFEEMQE 432

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +SW ++V+ +A +    +A   F  M L   +P   S    L+  +R+  +  GK++
Sbjct: 433 RDGVSWTAMVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEV 492

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG+  ++  +  +  +      MY KC  ++++  +F++ P +     +S+++    +G 
Sbjct: 493 HGHTLRVYGE--TTFINDCFISMYSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGC 550

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNI 452
            ++A+ +F  MV   I +D    S+ L     S  A++     C+ LH  AIK+G  S+ 
Sbjct: 551 GEEAISLFQLMVAASIRIDSYICSSIL-----SLCADIARPFYCKPLHGYAIKAGILSDQ 605

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           +VS SL+  YSR G+++ S +VF++I  P++V +T+I++GY+++G  + AL M ++M+Q 
Sbjct: 606 SVSSSLVKVYSRSGNMDDSRKVFDEISVPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQL 665

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD V  + VL+ C+ +G+V++G   FNSM++ YG++ + QHY CM+D+LGR+G L +
Sbjct: 666 GVRPDTVVLVSVLSACSRNGLVEQGFNYFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAE 725

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A+  +   P   D M+WS+L+ +CRVH + ++GR V N + E    D   ++ +SN  + 
Sbjct: 726 AKYFVDSMPMKPDLMVWSTLVAACRVHDDTVLGRFVENKIREGN-YDSGSFATLSNILAN 784

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLI 660
            G++E   +IR+T   + + ++ G S++
Sbjct: 785 SGDWEEVARIRKT--MKGVNKEPGWSMV 810



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 133/573 (23%), Positives = 264/573 (46%), Gaps = 38/573 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N Y     +D   KSG L  A ++F +      V +N  +SG  +      A+ ++ +MV
Sbjct: 103 NAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNGEGGLAVEMFRDMV 162

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               + ++ T+S  LS C+     + G  +H  VL      ++++G+ LV++Y + G   
Sbjct: 163 WGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRDPEYDVFVGTSLVNMYAKCGDMG 222

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+  F  +P RN+ +W   +  F +   P   + +  +M   GV  N  +   ++  C+
Sbjct: 223 AAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLLREMVRNGVAINKYTATSILLACA 282

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISW 281
              ++ E  Q+H  V+K   + ++  V  AL+  Y+  G +  ++K F+    V +   W
Sbjct: 283 QMSMVREASQIHGMVLKTE-MYLDCVVKEALISTYTNFGFIELSEKVFEEAGTVSNRSIW 341

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++ +S  +++ L+  +++L  RM     RP+ + +       S   ++ FG Q+H    K
Sbjct: 342 SAFISGVSNHSLL-RSVQLLRRMFHQGLRPNDKCYASVF---SSVNSIEFGGQLHSSAIK 397

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF HG + V SAL+ MY +C+ ++ S  VFE    R      +++      G+  +A  
Sbjct: 398 EGFIHG-ILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTAMVAGFATHGHSVEAFL 456

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            F  M+ +G   D V+L+  L A + S     G  + +H   ++   E+     C  +  
Sbjct: 457 TFRNMILDGFKPDHVSLTAILSACNRSECLLKG--KEVHGHTLRVYGETTFINDC-FISM 513

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+C  ++ + ++F+  P  + V ++S+++GY+ NG G EA+ + ++M+   +  D    
Sbjct: 514 YSKCQGVQTARRIFDATPCKDQVMWSSMISGYATNGCGEEAISLFQLMVAASIRIDSYIC 573

Query: 522 LCVLAGCN-----------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             +L+ C            H   +K G L            +D+   S ++ +  R+G +
Sbjct: 574 SSILSLCADIARPFYCKPLHGYAIKAGIL------------SDQSVSSSLVKVYSRSGNM 621

Query: 571 DKAEELLQQ--TPGGGDCMMWSSLLRSCRVHGN 601
           D + ++  +   P   D + W++++     HG+
Sbjct: 622 DDSRKVFDEISVP---DLVAWTTIIDGYAQHGS 651



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 123/472 (26%), Positives = 211/472 (44%), Gaps = 14/472 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q++C     G   N Y+ + +VDL  + G    AL +F +    +   WN  +       
Sbjct: 90  QVYCAAWKDGLSGNAYVCTGMVDLLAKSGRLRDALRVFADGDPSSAVCWNAAVSGAVRNG 149

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                + M+  M     EPN  ++   +  C+ G  L  G+ +H  V++    + ++FV 
Sbjct: 150 EGGLAVEMFRDMVWGSCEPNSFTYSGALSACAAGEELSVGRAVHGLVLRRD-PEYDVFVG 208

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +LV+ Y+ CG +  A + F  +PV +V+SW + ++ +   D    A+ L    ++ R  
Sbjct: 209 TSLVNMYAKCGDMGAAMREFWRMPVRNVVSWTTAIAGFVQDDEPVSAMLLL--REMVRNG 266

Query: 311 PSIRSF--VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +I  +     L   ++   V    QIHG V K       V V+ AL   Y     IE S
Sbjct: 267 VAINKYTATSILLACAQMSMVREASQIHGMVLKTEMYLDCV-VKEALISTYTNFGFIELS 325

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VFE A   S     S   S + + ++  +V++   M  +G+  ++   ++   +++  
Sbjct: 326 EKVFEEAGTVSNRSIWSAFISGVSNHSLLRSVQLLRRMFHQGLRPNDKCYASVFSSVN-- 383

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            S   G    LH  AIK GF   I V  +L   YSRC +++ S++VFE++   + V +T+
Sbjct: 384 -SIEFGG--QLHSSAIKEGFIHGILVGSALSTMYSRCDNVQDSYKVFEEMQERDGVSWTA 440

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ G++ +G   EA      MI  G  PD V+   +L+ CN S  + +G+ V      VY
Sbjct: 441 MVAGFATHGHSVEAFLTFRNMILDGFKPDHVSLTAILSACNRSECLLKGKEVHGHTLRVY 500

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           G         C I M  +   +  A  +   TP   D +MWSS++     +G
Sbjct: 501 GETTFIN--DCFISMYSKCQGVQTARRIFDATP-CKDQVMWSSMISGYATNG 549



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 46/176 (26%), Positives = 82/176 (46%), Gaps = 10/176 (5%)

Query: 20  CTSIVPLSSSLLLDSYCQPNPQLNIYS--------SNRTIDDFVKSGHLNSAKKLFDEMP 71
           C+SI+ L + +    YC+P     I +        S+  +  + +SG+++ ++K+FDE+ 
Sbjct: 573 CSSILSLCADIARPFYCKPLHGYAIKAGILSDQSVSSSLVKVYSRSGNMDDSRKVFDEIS 632

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
             D+V +  +I G  +    + AL ++D MV  G++       SVLS CS  G   +G  
Sbjct: 633 VPDLVAWTTIIDGYAQHGSSQNALAMFDLMVQLGVRPDTVVLVSVLSACSRNGLVEQGFN 692

Query: 132 -IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRA 185
             +    + G    L     +VDL  R G    A    D +P + +L  W+ ++ A
Sbjct: 693 YFNSMRTAYGVEPELQHYCCMVDLLGRSGRLAEAKYFVDSMPMKPDLMVWSTLVAA 748


>gi|356567218|ref|XP_003551818.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Glycine max]
          Length = 727

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 172/538 (31%), Positives = 298/538 (55%), Gaps = 15/538 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH R++  G   N ++ + LV+    +G    A  LFDE    ++  WN ++R++   +
Sbjct: 74  QIHNRLVISGLQHNGFLMTKLVNGSSNLGQICYARKLFDEFCYPDVFMWNAIIRSYSRNN 133

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ--LHSHVIKLGWVDVNIF 248
              + + MY  M+  GV P+G +F Y+++ C+   LLD G    +H  +IK G+   ++F
Sbjct: 134 MYRDTVEMYRWMRWTGVHPDGFTFPYVLKACT--ELLDFGLSCIIHGQIIKYGF-GSDVF 190

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V N LV  Y+ CG +  AK  FD +    ++SW SI+S YA      +AL +F +M+   
Sbjct: 191 VQNGLVALYAKCGHIGVAKVVFDGLYHRTIVSWTSIISGYAQNGKAVEALRMFSQMRNNG 250

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P   + V  L   +   ++  G+ IHG+V K+G +     + S LT  Y KC ++  +
Sbjct: 251 VKPDWIALVSILRAYTDVDDLEQGRSIHGFVIKMGLEDEPALLIS-LTAFYAKCGLVTVA 309

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            + F+     ++   N++++    +G+ ++AV +F +M+   I  D VT+ +     +V 
Sbjct: 310 KSFFDQMKTTNVIMWNAMISGYAKNGHAEEAVNLFHYMISRNIKPDSVTVRS-----AVL 364

Query: 429 ASANLGSCRLLHCC---AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           ASA +GS  L         KS + S+I V+ SL+D Y++CG +E + +VF++    +VV 
Sbjct: 365 ASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGSVEFARRVFDRNSDKDVVM 424

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +++++ GY  +G G EA+++  VM Q G+ P+ VTF+ +L  CNHSG+VKEG  +F+ MK
Sbjct: 425 WSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTACNHSGLVKEGWELFHCMK 484

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             + I    +HYSC++D+LGRAG L +A   + + P      +W +LL +C+++    +G
Sbjct: 485 D-FEIVPRNEHYSCVVDLLGRAGYLGEACAFIMKIPIEPGVSVWGALLSACKIYRCVTLG 543

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
              AN L  L+P +   Y Q+SN Y+    ++    +R     + L +D+G+S+IE+N
Sbjct: 544 EYAANKLFSLDPYNTGHYVQLSNLYASSCLWDCVAHVRVLMREKGLNKDLGYSVIEIN 601



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 110/436 (25%), Positives = 208/436 (47%), Gaps = 5/436 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G +  A+KLFDE    D+  +N +I    +    +  + +Y  M   G+     TF  VL
Sbjct: 102 GQICYARKLFDEFCYPDVFMWNAIIRSYSRNNMYRDTVEMYRWMRWTGVHPDGFTFPYVL 161

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C+    +     IH +++  GFG ++++ + LV LY + G    A  +FD L  R + 
Sbjct: 162 KACTELLDFGLSCIIHGQIIKYGFGSDVFVQNGLVALYAKCGHIGVAKVVFDGLYHRTIV 221

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  ++  + +  +  E LRM+++M+  GV+P+ ++   ++R  +    L++G+ +H  V
Sbjct: 222 SWTSIISGYAQNGKAVEALRMFSQMRNNGVKPDWIALVSILRAYTDVDDLEQGRSIHGFV 281

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           IK+G  D    +  +L  FY+ CG +  AK  FD +   +VI WN+++S YA      +A
Sbjct: 282 IKMGLEDEPALLI-SLTAFYAKCGLVTVAKSFFDQMKTTNVIMWNAMISGYAKNGHAEEA 340

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           + LF  M     +P   +    +  +++ G++   + +  YV+K  +    + V ++L D
Sbjct: 341 VNLFHYMISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYG-SDIFVNTSLID 399

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  +E +  VF+    + +   ++++      G   +A+ ++  M   G+  ++VT
Sbjct: 400 MYAKCGSVEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVT 459

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A + S     G   L HC         N   SC ++D   R G++  +     K
Sbjct: 460 FIGLLTACNHSGLVKEG-WELFHCMKDFEIVPRNEHYSC-VVDLLGRAGYLGEACAFIMK 517

Query: 478 IP-SPNVVCFTSIMNG 492
           IP  P V  + ++++ 
Sbjct: 518 IPIEPGVSVWGALLSA 533



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 50/194 (25%), Positives = 91/194 (46%), Gaps = 5/194 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+S  + P   T+ +       +  L  +  +D Y  + N   +I+ +   ID + K G 
Sbjct: 347 MISRNIKPDSVTVRSAVLASAQVGSLELAQWMDDYVSKSNYGSDIFVNTSLIDMYAKCGS 406

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+++FD    +D+V ++ +I G G      +A+ LY  M   G+  +  TF  +L+ 
Sbjct: 407 VEFARRVFDRNSDKDVVMWSAMIMGYGLHGQGWEAINLYHVMKQAGVFPNDVTFIGLLTA 466

Query: 120 CSNAGFYTEGIQI-HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
           C+++G   EG ++ HC         N +  S +VDL  R G    A     ++P E  ++
Sbjct: 467 CNHSGLVKEGWELFHCMKDFEIVPRNEHY-SCVVDLLGRAGYLGEACAFIMKIPIEPGVS 525

Query: 178 TWNLMLRAFCELSR 191
            W  +L A C++ R
Sbjct: 526 VWGALLSA-CKIYR 538


>gi|224057914|ref|XP_002299387.1| predicted protein [Populus trichocarpa]
 gi|222846645|gb|EEE84192.1| predicted protein [Populus trichocarpa]
          Length = 814

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 203/645 (31%), Positives = 337/645 (52%), Gaps = 40/645 (6%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ++ + K G L  A K+FD +  RD V++N +IS   +F   + A+  +  M+  G +
Sbjct: 51  NTLVNMYGKCGGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFE 110

Query: 108 ESASTFSSVLSVCSN----AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            S+ T  S+   CSN     G +  G QIH      G     +  + L+ +Y ++G    
Sbjct: 111 PSSFTLVSMALACSNLRKRDGLWL-GKQIHGCCFRKGH-WRTFSNNALMAMYAKLGRLDD 168

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  L     +R+L TWN M+ +F +  R  E L     M  EGV+P+G++F  ++  CS 
Sbjct: 169 AKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSH 228

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
             LL  GK++H++ ++   V  N FV +ALVD Y  CG +   +  FD +    +  WN+
Sbjct: 229 LDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNA 288

Query: 284 IVSIYADYDLIFDALELFFRMQ----LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +++ YA  +    AL LF  M+    L     ++ S V       R   +   + IHGYV
Sbjct: 289 MIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAY---VRCEGISRKEGIHGYV 345

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G +    ++Q+AL DMY +   I++S  +F+S   R +   N+++TS +  G   DA
Sbjct: 346 IKRGLETNR-YLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDA 404

Query: 400 VEMFGFM--VDEGIGLD--------------EVTLSTTLKA-LSVSASANLGSCRLLHCC 442
           + +   M  ++E    D               +TL T L    S+SA   L   + +H  
Sbjct: 405 LLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSA---LAKGKEIHAY 461

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
           AI++   S + V  +L+D Y++CG + L+ +VF+++P  NV+ +  I+  Y  +G G+E+
Sbjct: 462 AIRNLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKES 521

Query: 503 LDMLEVMIQRG-----LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
           L++ E M+  G     + P +VTF+ + A C+HSGMV EG  +F+ MK+ +GI+    HY
Sbjct: 522 LELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEGLSLFHKMKNEHGIEPAPDHY 581

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELE 616
           +C++D++GRAG +++A  L+   P G D +  WSSLL +CR++ N  IG   A  L++L+
Sbjct: 582 ACIVDLVGRAGKVEEAYGLVNTMPSGFDKVGAWSSLLGACRIYHNIEIGEIAAENLLQLQ 641

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           P   + Y  +SN YS  G ++ +M +R    A  + ++ G S IE
Sbjct: 642 PDVASHYVLLSNIYSSAGLWDKAMNLRRRMKAMGVKKEPGCSWIE 686



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 134/506 (26%), Positives = 225/506 (44%), Gaps = 29/506 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLL---LDSYCQPNPQLNIYSSNRTIDDFVKS 57
           ML     P   T+ ++A  C+++       L   +   C        +S+N  +  + K 
Sbjct: 104 MLMEGFEPSSFTLVSMALACSNLRKRDGLWLGKQIHGCCFRKGHWRTFSNNALMAMYAKL 163

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L+ AK L      RD+VT+N +IS   +     +AL     MV  G+K    TF+SVL
Sbjct: 164 GRLDDAKSLLVLFEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVL 223

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
             CS+      G +IH   L     + N ++GS LVD+Y   G       +FD + +R +
Sbjct: 224 PACSHLDLLRTGKEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKI 283

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
             WN M+  + +    ++ L ++ +M+ A G+  N  +   +V        +   + +H 
Sbjct: 284 GLWNAMIAGYAQSEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAYVRCEGISRKEGIHG 343

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           +VIK G ++ N ++ NAL+D YS  G +  +K+ FD +   D++SWN+I++ Y       
Sbjct: 344 YVIKRG-LETNRYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSS 402

Query: 296 DALELFFRMQLCRK----------------RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           DAL L   MQ   +                +P+  + +  L   +    +  GK+IH Y 
Sbjct: 403 DALLLLHEMQRIEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYA 462

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            +       V V SAL DMY KC  +  +  VF+  P R++   N ++ +    G  K++
Sbjct: 463 IR-NLLASQVTVGSALVDMYAKCGCLNLARRVFDQMPIRNVITWNVIIMAYGMHGKGKES 521

Query: 400 VEMFGFMVDEG-----IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
           +E+F  MV EG     +   EVT      + S S   + G   L H    + G E     
Sbjct: 522 LELFEDMVAEGAKGGEVKPTEVTFIALFASCSHSGMVDEG-LSLFHKMKNEHGIEPAPDH 580

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPS 480
              ++D   R G +E ++ +   +PS
Sbjct: 581 YACIVDLVGRAGKVEEAYGLVNTMPS 606



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/527 (25%), Positives = 236/527 (44%), Gaps = 36/527 (6%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRM 158
           M+  G       F +VL   +       G QIH  V   G+G   ++ I + LV++Y + 
Sbjct: 1   MIGSGFSPDNFAFPAVLKAVAGIQELYLGKQIHAHVFKFGYGSFSSVTIDNTLVNMYGKC 60

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  +FD + ER+  +WN ++ A C     +  ++ +  M  EG EP+  +   M 
Sbjct: 61  GGLGDAYKVFDRITERDQVSWNSIISALCRFEEWEVAIKAFRLMLMEGFEPSSFTLVSMA 120

Query: 219 RGCS-----IGMLLDEGKQLHSHVIKLG-WVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
             CS      G+ L  GKQ+H    + G W     F  NAL+  Y+  G L +AK     
Sbjct: 121 LACSNLRKRDGLWL--GKQIHGCCFRKGHW---RTFSNNALMAMYAKLGRLDDAKSLLVL 175

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
               D+++WNS++S ++  +   +AL     M L   +P   +F   L   S    +  G
Sbjct: 176 FEDRDLVTWNSMISSFSQNERFMEALMFLRLMVLEGVKPDGVTFASVLPACSHLDLLRTG 235

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           K+IH Y  +      +  V SAL DMY  C  +ES   VF+S   R +   N+++     
Sbjct: 236 KEIHAYALRTDDVIENSFVGSALVDMYCNCGQVESGRLVFDSVLDRKIGLWNAMIAGYAQ 295

Query: 393 SGNIKDAVEMFGFM-VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
           S + + A+ +F  M    G+  +  T+S+ + A        +     +H   IK G E+N
Sbjct: 296 SEHDEKALMLFIEMEAAAGLYSNATTMSSIVPAY--VRCEGISRKEGIHGYVIKRGLETN 353

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM-- 509
             +  +L+D YSR G I+ S ++F+ +   ++V + +I+  Y   G   +AL +L  M  
Sbjct: 354 RYLQNALIDMYSRMGDIKTSKRIFDSMEDRDIVSWNTIITSYVICGRSSDALLLLHEMQR 413

Query: 510 --------------IQRGLIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSMKSVYGIDADR 554
                          Q    P+ +T + VL GC   S + K  ++   +++++  + +  
Sbjct: 414 IEEKSTYDGDYNDEKQVPFKPNSITLMTVLPGCASLSALAKGKEIHAYAIRNL--LASQV 471

Query: 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
              S ++DM  + G L+ A  +  Q P   + + W+ ++ +  +HG 
Sbjct: 472 TVGSALVDMYAKCGCLNLARRVFDQMP-IRNVITWNVIIMAYGMHGK 517


>gi|225452956|ref|XP_002279032.1| PREDICTED: pentatricopeptide repeat-containing protein At5g39350
           [Vitis vinifera]
 gi|296082987|emb|CBI22288.3| unnamed protein product [Vitis vinifera]
          Length = 676

 Score =  295 bits (756), Expect = 4e-77,   Method: Compositional matrix adjust.
 Identities = 180/605 (29%), Positives = 324/605 (53%), Gaps = 7/605 (1%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-TFSSVLSVCS 121
           A+KLFDE+    + ++N +I           AL L+ +M++ G +   + T+  V+  C 
Sbjct: 75  ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
           +      G  IH R +  GF  + ++ + L+ +YM  G    A  +FD + ER L +WN 
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+  + +     E L +++ M  +G+EP+  +   ++  CS    L+ G+++H+ ++++ 
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA-LVEVK 253

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  +I V N+L+D Y+ CG++ EA+  F  +   DV+SW ++++ Y        AL L 
Sbjct: 254 NLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLC 313

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             MQ    +P+  +    L+  +   ++  G+ +HG+  +   +   V V++AL DMY K
Sbjct: 314 QMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLE-SEVIVETALIDMYAK 372

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           CN +  S  VF     +     N++++  +H+G  + A+E+F  M+ E +  ++ TL++ 
Sbjct: 373 CNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSL 432

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A +     +L   R +H   I+SGF S I V+  L+D YS+CG +E +H +F  IP  
Sbjct: 433 LPAYAFLT--DLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKK 490

Query: 482 N--VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           +  ++ +++I+ GY  +G G  A+ + + M+Q G+ P+++TF  +L  C+H+G+V EG  
Sbjct: 491 DKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLG 550

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +F  M     +     HY+C+ID+LGRAG L++A EL++      +  +W +LL SC +H
Sbjct: 551 LFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIH 610

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            N  +G   A  L ELEP +   Y  ++N YS +G +  +  +R       L +   HSL
Sbjct: 611 ENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSL 670

Query: 660 IEVNS 664
           IEV +
Sbjct: 671 IEVRN 675



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 247/518 (47%), Gaps = 19/518 (3%)

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY---I 147
           P QAL     +++     + + + S+L  C++        QIH   ++LG   + Y   +
Sbjct: 4   PSQALSKSKHLLT-----ATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHL 58

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            S L   Y   G +  A  LFDEL   +L +WN M+R +       + L ++ +M A G 
Sbjct: 59  LSSLAAAYAMFGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGR 118

Query: 208 E-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
             P+  ++ ++++ C   +L + G  +H+  +  G+ D + FV N+L+  Y  CG +  A
Sbjct: 119 RWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGF-DSDAFVQNSLMAMYMNCGEMEVA 177

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           ++ FD +    ++SWN++++ Y     + +AL +F  M      P   + V  L   S  
Sbjct: 178 RRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYL 237

Query: 327 GNVYFGKQIHGY--VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
             +  G+++H    V  LG D   + V ++L DMY KC  ++ +  +F     R +    
Sbjct: 238 KELEVGRRVHALVEVKNLGED---ISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWT 294

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           ++M   + +G+ + A+ +   M  E +  + VTL++ L A +   S   G C  LH  AI
Sbjct: 295 TMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRC--LHGWAI 352

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           +   ES + V  +L+D Y++C ++ LS +VF K        + +I++G   NG+ R+A++
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           + + M+   + P+  T   +L        +++ + +   +    G  +  +  + +ID+ 
Sbjct: 413 LFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRS-GFLSRIEVATILIDIY 471

Query: 565 GRAGILDKAEELLQQTPGG-GDCMMWSSLLRSCRVHGN 601
            + G L+ A  +    P    D + WS+++    +HG+
Sbjct: 472 SKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGH 509



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 188/386 (48%), Gaps = 4/386 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + +  N  +  ++  G +  A+++FD M  R +V++N +I+G  K    K+AL ++D M+
Sbjct: 157 DAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMI 216

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI+   +T  SVL VCS       G ++H  V     G ++ + + L+D+Y + G   
Sbjct: 217 GKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMD 276

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F E+ +R++ +W  M+  +         L +   M+ E V+PN ++   ++  C+
Sbjct: 277 EAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G+ LH   I+   ++  + V  AL+D Y+ C ++  + + F          WN
Sbjct: 337 SLYSLKHGRCLHGWAIRQK-LESEVIVETALIDMYAKCNNVNLSFRVFSKTSKQRTAPWN 395

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I+S      L   A+ELF +M +    P+  +    L   +   ++   + +HGY+ + 
Sbjct: 396 AIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRS 455

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE--CCNSLMTSLLHSGNIKDAV 400
           GF    + V + L D+Y KC  +ES+  +F   P +  +    ++++      G+ + A+
Sbjct: 456 GF-LSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAI 514

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALS 426
            +F  MV  G+  +E+T ++ L A S
Sbjct: 515 SLFDQMVQSGVKPNEITFTSILHACS 540


>gi|449444600|ref|XP_004140062.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g17210-like [Cucumis sativus]
          Length = 747

 Score =  295 bits (756), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 185/638 (28%), Positives = 333/638 (52%), Gaps = 14/638 (2%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L+   CQ +  +    +N TID ++K G L+SA++ FD    +D V++N+++ G      
Sbjct: 73  LIKQGCQSSTSI----ANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGS 128

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
               L  + +      + + S+   V+        Y++G   H  +   GF   L + + 
Sbjct: 129 IMAGLCWFIKGRFAHFQPNISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAILSVQNS 188

Query: 151 LVDLYMRMGPSVRALDLFDELPERN-LATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVE 208
           L+ LY  +     A  LF E+  RN + +W++M+  F ++   ++   M+  M  E G+ 
Sbjct: 189 LLSLYAEVHMYF-AHKLFGEMSVRNDVVSWSVMIGGFVQIGEDEQGFLMFRNMVTEAGIP 247

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+G++   +++ C+    +  G  +H  VI  G  D ++FV N+L+D YS C ++  A K
Sbjct: 248 PDGVTVVSVLKACTNLKDISLGTMVHGLVIFRGLED-DLFVGNSLIDMYSKCFNVHSAFK 306

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
           +F  IP  ++ISWN ++S Y   +   +AL L   M          +    L  A    +
Sbjct: 307 AFKEIPEKNIISWNLMLSAYILNESHLEALALLGTMVREGAEKDEVTLANVLQIAKHFLD 366

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
               + +HG + + G++   + + S + D Y KCN++E +  VF+    + +   ++++ 
Sbjct: 367 SLKCRSVHGVIIRKGYESNELLLNSVI-DAYAKCNLVELARMVFDGMNKKDVVAWSTMIA 425

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
               +G   +A+ +F  M +E I  + V++   ++A +VSA   L   +  H  A++ G 
Sbjct: 426 GFARNGKPDEAISVFKQMNEEVIP-NNVSIMNLMEACAVSAE--LRQSKWAHGIAVRRGL 482

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            S + +  S++D YS+CG IE S + F +IP  NVVC++++++ +  NG+  EAL + E 
Sbjct: 483 ASEVDIGTSIIDMYSKCGDIEASIRAFNQIPQKNVVCWSAMISAFRINGLAHEALMLFEK 542

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           + Q G  P+ VT L +L+ C+H G+++EG   F SM   +GI+   +HYSC++DML RAG
Sbjct: 543 IKQNGTKPNAVTALSLLSACSHGGLMEEGLSFFTSMVQKHGIEPGLEHYSCIVDMLSRAG 602

Query: 569 ILDKAEELLQQTPG--GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
             ++A EL+++ P        +W +LL SCR +GN  +G   A+ +++LEP+  A Y   
Sbjct: 603 KFNEALELIEKLPKEMEAGASIWGTLLSSCRSYGNISLGSGAASRVLQLEPLSSAGYMLA 662

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           SN Y+  G    S ++R  A  + +    G+SL+ +NS
Sbjct: 663 SNLYANCGLMIDSAKMRRLAKEKGVKVVAGYSLVHINS 700



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 126/515 (24%), Positives = 250/515 (48%), Gaps = 18/515 (3%)

Query: 92  KQALYLYDEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           ++AL LY E+   G + S +    S+L  CSN  F   G  +H  ++  G   +  I + 
Sbjct: 29  QEALQLYHEIRISGAQLSDTWVLPSILKACSNTSF-NLGTAMHGCLIKQGCQSSTSIANS 87

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
            +D YM+ G    A   FD    ++  +WN+M+            L  + K +    +PN
Sbjct: 88  TIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNGSIMAGLCWFIKGRFAHFQPN 147

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             S   +++      +  +G   H ++ + G+  + + V N+L+  Y+    +  A K F
Sbjct: 148 ISSLLLVIQAFRELKIYSQGFAFHGYIFRSGFSAI-LSVQNSLLSLYAEV-HMYFAHKLF 205

Query: 271 DFIPV-DDVISWNSIVSIYADYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTG 327
             + V +DV+SW+ ++  +           L FR  +      P   + V  L   +   
Sbjct: 206 GEMSVRNDVVSWSVMIGGFVQIGEDEQGF-LMFRNMVTEAGIPPDGVTVVSVLKACTNLK 264

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           ++  G  +HG V   G +   + V ++L DMY KC  + S+   F+  P +++   N ++
Sbjct: 265 DISLGTMVHGLVIFRGLED-DLFVGNSLIDMYSKCFNVHSAFKAFKEIPEKNIISWNLML 323

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS--CRLLHCCAIK 445
           ++ + + +  +A+ + G MV EG   DEVTL+  L+     A   L S  CR +H   I+
Sbjct: 324 SAYILNESHLEALALLGTMVREGAEKDEVTLANVLQI----AKHFLDSLKCRSVHGVIIR 379

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            G+ESN  +  S++DAY++C  +EL+  VF+ +   +VV +++++ G++RNG   EA+ +
Sbjct: 380 KGYESNELLLNSVIDAYAKCNLVELARMVFDGMNKKDVVAWSTMIAGFARNGKPDEAISV 439

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            + M +  +IP+ V+ + ++  C  S  +++ +   + +    G+ ++    + +IDM  
Sbjct: 440 FKQMNEE-VIPNNVSIMNLMEACAVSAELRQSKWA-HGIAVRRGLASEVDIGTSIIDMYS 497

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + G ++ +     Q P   + + WS+++ + R++G
Sbjct: 498 KCGDIEASIRAFNQIP-QKNVVCWSAMISAFRING 531



 Score = 47.4 bits (111), Expect = 0.028,   Method: Compositional matrix adjust.
 Identities = 31/107 (28%), Positives = 61/107 (57%), Gaps = 4/107 (3%)

Query: 392 HSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           +SGN ++A++++  +   G  L D   L + LKA S + S NLG+   +H C IK G +S
Sbjct: 24  YSGNWQEALQLYHEIRISGAQLSDTWVLPSILKACS-NTSFNLGTA--MHGCLIKQGCQS 80

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           + +++ S +D Y + G ++ + + F+   + + V +  +++G   NG
Sbjct: 81  STSIANSTIDFYMKYGDLDSAQRAFDSTKNKDSVSWNVMVHGNFSNG 127


>gi|15240583|ref|NP_196827.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75181132|sp|Q9LYV3.1|PP377_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g13230, mitochondrial; Flags: Precursor
 gi|7529278|emb|CAB86630.1| putative protein [Arabidopsis thaliana]
 gi|332004486|gb|AED91869.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 822

 Score =  295 bits (756), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 182/638 (28%), Positives = 342/638 (53%), Gaps = 10/638 (1%)

Query: 25  PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           P+S+  +     +    L+++++N  ++ +VK+G    A  LFDEMP R+ V++  L  G
Sbjct: 65  PISAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSFVTLAQG 124

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
                  +  + LY  +   G + +   F+S L +  +         +H  ++ LG+  N
Sbjct: 125 YA----CQDPIGLYSRLHREGHELNPHVFTSFLKLFVSLDKAEICPWLHSPIVKLGYDSN 180

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
            ++G+ L++ Y   G    A  +F+ +  +++  W  ++  + E    ++ L++ + M+ 
Sbjct: 181 AFVGAALINAYSVCGSVDSARTVFEGILCKDIVVWAGIVSCYVENGYFEDSLKLLSCMRM 240

Query: 205 EGVEPNGLSFCYMVRGCSIGM-LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
            G  PN  +F   ++  SIG+   D  K +H  ++K  +V ++  V   L+  Y+  G +
Sbjct: 241 AGFMPNNYTFDTALKA-SIGLGAFDFAKGVHGQILKTCYV-LDPRVGVGLLQLYTQLGDM 298

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
            +A K F+ +P +DV+ W+ +++ +       +A++LF RM+     P+  +    LN  
Sbjct: 299 SDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNEAVDLFIRMREAFVVPNEFTLSSILNGC 358

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +       G+Q+HG V K+GFD   ++V +AL D+Y KC  ++++V +F     ++    
Sbjct: 359 AIGKCSGLGEQLHGLVVKVGFDL-DIYVSNALIDVYAKCEKMDTAVKLFAELSSKNEVSW 417

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N+++    + G    A  MF   +   + + EVT S+ L A +  AS +LG    +H  A
Sbjct: 418 NTVIVGYENLGEGGKAFSMFREALRNQVSVTEVTFSSALGACASLASMDLGV--QVHGLA 475

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           IK+     +AVS SL+D Y++CG I+ +  VF ++ + +V  + ++++GYS +G+GR+AL
Sbjct: 476 IKTNNAKKVAVSNSLIDMYAKCGDIKFAQSVFNEMETIDVASWNALISGYSTHGLGRQAL 535

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
            +L++M  R   P+ +TFL VL+GC+++G++ +GQ  F SM   +GI+   +HY+CM+ +
Sbjct: 536 RILDIMKDRDCKPNGLTFLGVLSGCSNAGLIDQGQECFESMIRDHGIEPCLEHYTCMVRL 595

Query: 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623
           LGR+G LDKA +L++  P     M+W ++L +     NE   RR A  ++++ P D A Y
Sbjct: 596 LGRSGQLDKAMKLIEGIPYEPSVMIWRAMLSASMNQNNEEFARRSAEEILKINPKDEATY 655

Query: 624 SQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             VSN Y+   ++     IR++     + ++ G S IE
Sbjct: 656 VLVSNMYAGAKQWANVASIRKSMKEMGVKKEPGLSWIE 693


>gi|225449798|ref|XP_002272111.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 849

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 165/614 (26%), Positives = 330/614 (53%), Gaps = 5/614 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           F K G L+ A ++F  +  +    Y+ ++ G  +      A+  +  M   G++     F
Sbjct: 119 FCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVRPVVYNF 178

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           + +L VC +     +G +IHC+++  GF  N++  + +V++Y +      A  +FD +PE
Sbjct: 179 TYLLKVCGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEAYKMFDRMPE 238

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+L  WN ++  + +       L +  +M+ EG  P+ ++   ++   +    L  G+ +
Sbjct: 239 RDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGSLRIGRSI 298

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H + ++ G+ +  + V+ ALVD YS CGS+  A+  FD +    V+SWNS++  Y     
Sbjct: 299 HGYSMRAGF-ESFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMIDGYVQNGD 357

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
              A+E+F +M   +   +  + +  L+  +  G+V  G+ +H  + +L      V V +
Sbjct: 358 PGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQGRFVHKLLDQLELG-SDVSVMN 416

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           +L  MY KC  ++ +  +FE+   ++L   N+++     +G I +A++ F  M  + I  
Sbjct: 417 SLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCKMQLQNIKP 476

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D  T+ + + AL+    + L   + +H   I++  + N+ V+ +L+D Y++CG +  + +
Sbjct: 477 DSFTMVSVIPALA--ELSVLPQAKWIHGLVIRTCLDKNVFVATALVDMYAKCGAVHTARK 534

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F+ +   +V  + ++++GY  +G+G+ AL++ E M +  + P++VTFLCVL+ C+HSG+
Sbjct: 535 LFDMMDERHVTTWNAMIDGYGTHGLGKAALELFEKMKKEVIKPNEVTFLCVLSACSHSGL 594

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           V+EG   F SMK  YG++    HY  M+D+LGRA  L++A + +Q+ P      ++ ++L
Sbjct: 595 VEEGFQYFGSMKKDYGLEPAMDHYGAMVDLLGRANRLNEAWDFIQKMPIEPAISVFGAML 654

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
            +CR+H N  +G + AN + +L+P D   +  ++N Y+    ++   ++R T   + + +
Sbjct: 655 GACRIHKNVELGEKAANRIFDLDPDDGGYHVLLANIYATASMWDKVARVRTTMEKKGIQK 714

Query: 654 DIGHSLIEV-NSCH 666
             G S++E+ N  H
Sbjct: 715 TPGWSVVELQNEVH 728



 Score =  193 bits (491), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 229/452 (50%), Gaps = 6/452 (1%)

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + LV L+ + G    A  +F  + ++    ++ ML+ +   S  D+ +  + +M+ +GV 
Sbjct: 113 TKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGVR 172

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P   +F Y+++ C     L +GK++H  +I  G+   N+F    +V+ Y+ C  + EA K
Sbjct: 173 PVVYNFTYLLKVCGDNADLRKGKEIHCQLIVNGFAS-NVFAMTGVVNMYAKCRLVEEAYK 231

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +P  D++ WN+I+S YA       ALEL  RMQ   KRP   + V  L   +  G+
Sbjct: 232 MFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADVGS 291

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  G+ IHGY  + GF+   V+V +AL DMY KC  + ++  +F+   G+++   NS++ 
Sbjct: 292 LRIGRSIHGYSMRAGFE-SFVNVSTALVDMYSKCGSVGTARLIFDRMTGKTVVSWNSMID 350

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
             + +G+   A+E+F  M+DE + +  VT+   L A +       G  R +H    +   
Sbjct: 351 GYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACADLGDVEQG--RFVHKLLDQLEL 408

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            S+++V  SL+  YS+C  ++++ ++FE +    +V + +++ GY++NG   EA+D    
Sbjct: 409 GSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWNAMILGYAQNGRINEAIDYFCK 468

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M  + + PD  T + V+       ++ + + + + +     +D +    + ++DM  + G
Sbjct: 469 MQLQNIKPDSFTMVSVIPALAELSVLPQAKWI-HGLVIRTCLDKNVFVATALVDMYAKCG 527

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            +  A +L            W++++     HG
Sbjct: 528 AVHTARKLFDMM-DERHVTTWNAMIDGYGTHG 558



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 210/449 (46%), Gaps = 4/449 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+++    ++ + K   +  A K+FD MP RD+V +N +ISG  +    K AL L   M 
Sbjct: 209 NVFAMTGVVNMYAKCRLVEEAYKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQ 268

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G +  + T  S+L   ++ G    G  IH   +  GF   + + + LVD+Y + G   
Sbjct: 269 EEGKRPDSITIVSILPAVADVGSLRIGRSIHGYSMRAGFESFVNVSTALVDMYSKCGSVG 328

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD +  + + +WN M+  + +   P   + ++ KM  E VE   ++    +  C+
Sbjct: 329 TARLIFDRMTGKTVVSWNSMIDGYVQNGDPGAAMEIFQKMMDEQVEMTNVTVMGALHACA 388

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               +++G+ +H  + +L  +  ++ V N+L+  YS C  +  A + F+ +    ++SWN
Sbjct: 389 DLGDVEQGRFVHKLLDQLE-LGSDVSVMNSLISMYSKCKRVDIAAEIFENLQHKTLVSWN 447

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  YA    I +A++ F +MQL   +P   + V  +   +    +   K IHG V + 
Sbjct: 448 AMILGYAQNGRINEAIDYFCKMQLQNIKPDSFTMVSVIPALAELSVLPQAKWIHGLVIRT 507

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D  +V V +AL DMY KC  + ++  +F+    R +   N+++      G  K A+E+
Sbjct: 508 CLDK-NVFVATALVDMYAKCGAVHTARKLFDMMDERHVTTWNAMIDGYGTHGLGKAALEL 566

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  E I  +EVT    L A S S     G  +         G E  +    +++D  
Sbjct: 567 FEKMKKEVIKPNEVTFLCVLSACSHSGLVEEG-FQYFGSMKKDYGLEPAMDHYGAMVDLL 625

Query: 463 SRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
            R   +  +    +K+P  P +  F +++
Sbjct: 626 GRANRLNEAWDFIQKMPIEPAISVFGAML 654



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 127/243 (52%), Gaps = 6/243 (2%)

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
           Q+ L  ++ K   +  +  VF+    +  E  ++++     + ++ DAV  F  M  +G+
Sbjct: 112 QTKLVSLFCKFGSLHEAARVFQPIEDKIDELYHTMLKGYARNSSLDDAVSFFCRMRYDGV 171

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
                  +  LK      +A+L   + +HC  I +GF SN+     +++ Y++C  +E +
Sbjct: 172 RPVVYNFTYLLKV--CGDNADLRKGKEIHCQLIVNGFASNVFAMTGVVNMYAKCRLVEEA 229

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
           +++F+++P  ++VC+ +I++GY++NG G+ AL+++  M + G  PD +T + +L      
Sbjct: 230 YKMFDRMPERDLVCWNTIISGYAQNGFGKTALELVLRMQEEGKRPDSITIVSILPAVADV 289

Query: 532 GMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           G ++ G+ +   SM++  G ++     + ++DM  + G +  A  +  +   G   + W+
Sbjct: 290 GSLRIGRSIHGYSMRA--GFESFVNVSTALVDMYSKCGSVGTARLIFDRMT-GKTVVSWN 346

Query: 591 SLL 593
           S++
Sbjct: 347 SMI 349


>gi|147819295|emb|CAN68962.1| hypothetical protein VITISV_019277 [Vitis vinifera]
          Length = 676

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 180/605 (29%), Positives = 324/605 (53%), Gaps = 7/605 (1%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-TFSSVLSVCS 121
           A+KLFDE+    + ++N +I           AL L+ +M++ G +   + T+  V+  C 
Sbjct: 75  ARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGRRWPDNYTYPFVIKACG 134

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
           +      G  IH R +  GF  + ++ + L+ +YM  G    A  +FD + ER L +WN 
Sbjct: 135 DYLLPEMGALIHARTVMSGFDSDAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNT 194

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+  + +     E L +++ M  +G+EP+  +   ++  CS    L+ G+++H+ ++++ 
Sbjct: 195 MINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYLKELEVGRRVHA-LVEVK 253

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  +I V N+L+D Y+ CG++ EA+  F  +   DV+SW ++++ Y        AL L 
Sbjct: 254 NLGEDISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLC 313

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             MQ    +P+  +    L+  +   ++  G+ +HG+  +   +   V V++AL DMY K
Sbjct: 314 QMMQFESVKPNFVTLASVLSACASLYSLKHGRCLHGWAIRQKLE-SEVIVETALIDMYAK 372

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           CN +  S  VF     +     N++++  +H+G  + A+E+F  M+ E +  ++ TL++ 
Sbjct: 373 CNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSL 432

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A +     +L   R +H   I+SGF S I V+  L+D YS+CG +E +H +F  IP  
Sbjct: 433 LPAYAFLT--DLQQARNMHGYLIRSGFLSRIEVATILIDIYSKCGSLESAHNIFNGIPKK 490

Query: 482 N--VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           +  ++ +++I+ GY  +G G  A+ + + M+Q G+ P+++TF  +L  C+H+G+V EG  
Sbjct: 491 DKDIITWSAIIAGYGMHGHGETAISLFDQMVQSGVKPNEITFTSILHACSHAGLVDEGLG 550

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +F  M     +     HY+C+ID+LGRAG L++A EL++      +  +W +LL SC +H
Sbjct: 551 LFKFMLEDNQMSLRTDHYTCVIDLLGRAGRLEEAYELIRTMAFRPNHAVWGALLGSCVIH 610

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            N  +G   A  L ELEP +   Y  ++N YS +G +  +  +R       L +   HSL
Sbjct: 611 ENVELGEVAAKWLFELEPGNTGNYVLLANIYSAVGRWRDAEHVRLMMNNIGLRKTPAHSL 670

Query: 660 IEVNS 664
           IEV +
Sbjct: 671 IEVRN 675



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 127/518 (24%), Positives = 247/518 (47%), Gaps = 19/518 (3%)

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY---I 147
           P QAL     +++     + + + S+L  C++        QIH   ++LG   + Y   +
Sbjct: 4   PSQALSKSKHLLT-----ATARYQSLLQRCTSRKSIPNTKQIHAHTITLGLLSSPYSHHL 58

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            S L   Y   G +  A  LFDEL   +L +WN M+R +       + L ++ +M A G 
Sbjct: 59  LSSLAAAYAMCGCAPHARKLFDELRNPSLFSWNAMIRMYTNSGLSYDALGLFVQMLASGR 118

Query: 208 E-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
             P+  ++ ++++ C   +L + G  +H+  +  G+ D + FV N+L+  Y  CG +  A
Sbjct: 119 RWPDNYTYPFVIKACGDYLLPEMGALIHARTVMSGF-DSDAFVQNSLMAMYMNCGEMEVA 177

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           ++ FD +    ++SWN++++ Y     + +AL +F  M      P   + V  L   S  
Sbjct: 178 RRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMIGKGIEPDCATVVSVLPVCSYL 237

Query: 327 GNVYFGKQIHGY--VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
             +  G+++H    V  LG D   + V ++L DMY KC  ++ +  +F     R +    
Sbjct: 238 KELEVGRRVHALVEVKNLGED---ISVWNSLLDMYAKCGNMDEAQMIFYEMDKRDVVSWT 294

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           ++M   + +G+ + A+ +   M  E +  + VTL++ L A +   S   G C  LH  AI
Sbjct: 295 TMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACASLYSLKHGRC--LHGWAI 352

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           +   ES + V  +L+D Y++C ++ LS +VF K        + +I++G   NG+ R+A++
Sbjct: 353 RQKLESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWNAIISGCIHNGLSRKAIE 412

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           + + M+   + P+  T   +L        +++ + +   +    G  +  +  + +ID+ 
Sbjct: 413 LFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRS-GFLSRIEVATILIDIY 471

Query: 565 GRAGILDKAEELLQQTP-GGGDCMMWSSLLRSCRVHGN 601
            + G L+ A  +    P    D + WS+++    +HG+
Sbjct: 472 SKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGH 509



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 188/386 (48%), Gaps = 4/386 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + +  N  +  ++  G +  A+++FD M  R +V++N +I+G  K    K+AL ++D M+
Sbjct: 157 DAFVQNSLMAMYMNCGEMEVARRVFDLMRERTLVSWNTMINGYFKNGCVKEALMVFDWMI 216

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI+   +T  SVL VCS       G ++H  V     G ++ + + L+D+Y + G   
Sbjct: 217 GKGIEPDCATVVSVLPVCSYLKELEVGRRVHALVEVKNLGEDISVWNSLLDMYAKCGNMD 276

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F E+ +R++ +W  M+  +         L +   M+ E V+PN ++   ++  C+
Sbjct: 277 EAQMIFYEMDKRDVVSWTTMMNGYILNGDARSALLLCQMMQFESVKPNFVTLASVLSACA 336

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G+ LH   I+   ++  + V  AL+D Y+ C ++  + + F          WN
Sbjct: 337 SLYSLKHGRCLHGWAIRQK-LESEVIVETALIDMYAKCNNVNLSFRVFSKXSKQRTAPWN 395

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I+S      L   A+ELF +M +    P+  +    L   +   ++   + +HGY+ + 
Sbjct: 396 AIISGCIHNGLSRKAIELFKQMLMEAVDPNDATLNSLLPAYAFLTDLQQARNMHGYLIRS 455

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE--CCNSLMTSLLHSGNIKDAV 400
           GF    + V + L D+Y KC  +ES+  +F   P +  +    ++++      G+ + A+
Sbjct: 456 GF-LSRIEVATILIDIYSKCGSLESAHNIFNGIPKKDKDIITWSAIIAGYGMHGHGETAI 514

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALS 426
            +F  MV  G+  +E+T ++ L A S
Sbjct: 515 SLFDQMVQSGVKPNEITFTSILHACS 540


>gi|225470674|ref|XP_002269391.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 587

 Score =  295 bits (755), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 306/553 (55%), Gaps = 8/553 (1%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T SS+L  CS       G+ +H  VL  G   ++++ + ++++Y + G +  A  +FDE+
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            E+NL +W+ M+  + +   P   + +Y++M    + PN   F  ++  C+    +  G+
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQ 121

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           ++HS  +K G+  ++ FV+N+L+  Y  C    +A   F   P  + +S+N++++ + + 
Sbjct: 122 KIHSRSLKFGYESIS-FVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVEN 180

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
             +   LE F  M+     P   +F+  L   + T N+  G ++H    KL  D  +  +
Sbjct: 181 QQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLD-STPFI 239

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-G 410
            + +  MY + N+I+ +   F     + +   N+L+ +  H  +    + +F  M +E  
Sbjct: 240 GNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETN 299

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D+ T ++ L A +  AS + G  + +H   +++    ++ V  +L++ Y++CG I  
Sbjct: 300 VRPDDFTFTSALAACAGLASMSHG--KQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGY 357

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           ++ +F K+   N+V + +I+ G+  +G+G  A+++ E M   G+ PD VTF+ +L  CNH
Sbjct: 358 AYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNH 417

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +G+V +GQL FNSM+  YGI  D +H+SC+IDMLGRAG L++AEE +++ P   D ++  
Sbjct: 418 AGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLV 477

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           SLL + R+HG+ +IG R+A  L++L+PV  + Y  +SN Y+  G ++   + R+      
Sbjct: 478 SLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSG 537

Query: 651 LTRDIGHSLIEVN 663
           L ++ GHSLIEVN
Sbjct: 538 LKKEPGHSLIEVN 550



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 228/477 (47%), Gaps = 12/477 (2%)

Query: 10  VRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFD 68
             T+++L   C+    L   L L +   +   Q +++ SN  ++ + K GH   A+++FD
Sbjct: 3   TETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFD 62

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           EM  +++V+++ +ISG  +   P+ A+ LY +M    +  +   F+SV+S C++    T 
Sbjct: 63  EMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTL 119

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G +IH R L  G+    ++ + L+ +YM+      AL +F   PE N  ++N ++  F E
Sbjct: 120 GQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVE 179

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
             + +  L  +  M+ +G+ P+  +F  ++  C+    L  G +LH   +KL  +D   F
Sbjct: 180 NQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLN-LDSTPF 238

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLC 307
           + N ++  YS    + EA+K+F  I   DVISWN++++  +  D     L +F  M +  
Sbjct: 239 IGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEET 298

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSVHVQSALTDMYGKCNVI 365
             RP   +F   L   +   ++  GKQIH ++  T+L  D G   V +AL +MY KC  I
Sbjct: 299 NVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLG---VGNALVNMYAKCGCI 355

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  +F      +L   N+++    + G  + AVE+F  M   GI  D VT    L A 
Sbjct: 356 GYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTAC 415

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           + +   + G     +      G   +I     L+D   R G +  + +   K P  N
Sbjct: 416 NHAGLVDKGQL-YFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWN 471


>gi|225449732|ref|XP_002267472.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 1058

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 187/662 (28%), Positives = 336/662 (50%), Gaps = 51/662 (7%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N+ S N  +  +     ++ A++LFD+MP R+ V++ ++ISG        +A  ++ 
Sbjct: 291 PEKNVASWNSVVTGYCHCYRMSEARELFDQMPERNSVSWMVMISGYVHISDYWEAWDVFV 350

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M     +   S F  VLS  +          +    +  G+  ++ +GS +++ Y R G
Sbjct: 351 KMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNG 410

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A+  F+ +PERN  +W  M+ AF +  R D+ +++Y ++  + V         M  
Sbjct: 411 SLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTV---ATKTAMMTA 467

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
              +G +  + + +   ++     + N+   NA++  Y+  G L EAK  F  +PV +  
Sbjct: 468 YAQVGRI-QKARLIFDEIL-----NPNVVAWNAIIAGYTQNGMLKEAKDLFQKMPVKNSA 521

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW ++++ +   +   +ALEL   +      PS  SF   L+  +  G+V  G+ IH   
Sbjct: 522 SWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLA 581

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIES-------------------------------S 368
            K G    S +V + L  MY KC  +E                                +
Sbjct: 582 IKTGCQFNS-YVMNGLISMYAKCGNVEDGSHVFRTIRVKDTVSWNSLISGLSENYMLDDA 640

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VFE  P R +    +++++ + +G+ + A+++F  M+  GI  +++T+++ L     S
Sbjct: 641 RVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLARGIKPNQLTVTSLL-----S 695

Query: 429 ASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           A  NLG+ +L    H    K GF++ + V  SL+  Y +CG+ E    VFE++P  +++ 
Sbjct: 696 ACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCGY-EDGFCVFEEMPEHDLIT 754

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + +++ G ++NG+G+EA+ + E M   G++PD+++FL VL  C+H+G+V EG   FNSM 
Sbjct: 755 WNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLCACSHAGLVDEGWAHFNSMT 814

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             YGI     HY+CM+D+LGRAG L +AE L++  P   D ++W +LL +CR+H N  +G
Sbjct: 815 QKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDSVIWEALLGACRIHRNVELG 874

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NS 664
           +RVA  L ++     A Y  +SN ++  G ++   +IR+    + LT++ G S I+V N 
Sbjct: 875 QRVAERLFQMTKPKSATYVLLSNLFASQGMWDKVAEIRKLMKDQGLTKEPGISWIQVKNK 934

Query: 665 CH 666
            H
Sbjct: 935 LH 936



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 145/653 (22%), Positives = 295/653 (45%), Gaps = 110/653 (16%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           +  PQ +++  N  I +  + G +  A+++F+EM  RD+V++N +I+G  +     +A  
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVFNEMIQRDVVSWNSMINGYSQNGKVDEARL 223

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG-IQIHCRVLSLGFGLNLYIGSPLVDLY 155
           L+D  V   I+    T++ +L+     G+  EG I+    V       N+   + ++  Y
Sbjct: 224 LFDAFVGKNIR----TWTILLT-----GYAKEGRIEEAREVFESMTERNVVSWNAMISGY 274

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           ++ G    A  LFDE+PE+N+A+WN ++  +C   R  E   ++++M     E N +S+ 
Sbjct: 275 VQNGDLKNARKLFDEMPEKNVASWNSVVTGYCHCYRMSEARELFDQMP----ERNSVSWM 330

Query: 216 YMVRG-----------------CSIGMLLDEG------------------KQLHSHVIKL 240
            M+ G                 C      D+                     L    IK 
Sbjct: 331 VMISGYVHISDYWEAWDVFVKMCRTVARPDQSIFVVVLSAITGLDDLELIGSLRPIAIKT 390

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G+ + ++ V +A+++ Y+  GSL  A   F+ +P  +  SW ++++ +A    + DA++L
Sbjct: 391 GY-EGDVVVGSAILNAYTRNGSLDLAMHFFETMPERNEYSWTTMIAAFAQCGRLDDAIQL 449

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           + R+       ++ +    +   ++ G +   + I   +      + +V   +A+   Y 
Sbjct: 450 YERV----PEQTVATKTAMMTAYAQVGRIQKARLIFDEIL-----NPNVVAWNAIIAGYT 500

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           +  +++ +  +F+  P ++     +++   + +   ++A+E+   +   G    + + ++
Sbjct: 501 QNGMLKEAKDLFQKMPVKNSASWAAMIAGFVQNEESREALELLIELHRSGSVPSDSSFTS 560

Query: 421 TLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE-------- 469
            L     SA AN+G     R++H  AIK+G + N  V   L+  Y++CG++E        
Sbjct: 561 AL-----SACANIGDVEIGRVIHSLAIKTGCQFNSYVMNGLISMYAKCGNVEDGSHVFRT 615

Query: 470 ---------------LSHQ--------VFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
                          LS          VFEK+P  +VV +T+I++ Y + G G  ALD+ 
Sbjct: 616 IRVKDTVSWNSLISGLSENYMLDDARVVFEKMPKRDVVSWTAIISAYVQAGHGEVALDLF 675

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M+ RG+ P+++T   +L+ C + G +K G+  F+++    G D      + +I M  +
Sbjct: 676 LDMLARGIKPNQLTVTSLLSACGNLGAIKLGEQ-FHALIFKLGFDTFLFVGNSLITMYFK 734

Query: 567 AGILDK---AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
            G  D     EE+ +      D + W+++L  C  +G   +G+    I  ++E
Sbjct: 735 CGYEDGFCVFEEMPEH-----DLITWNAVLVGCAQNG---LGKEAIKIFEQME 779



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 65/296 (21%), Positives = 119/296 (40%), Gaps = 53/296 (17%)

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           +  P   L  CN+ +  L   G +++A  +F    +E I  D V+ ++ +   S   +  
Sbjct: 164 KETPQTHLFQCNTRIQELGRLGRVEEARRVF----NEMIQRDVVSWNSMINGYS--QNGK 217

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
           +   RLL    +      NI     L+  Y++ G IE + +VFE +   NVV + ++++G
Sbjct: 218 VDEARLLFDAFVGK----NIRTWTILLTGYAKEGRIEEAREVFESMTERNVVSWNAMISG 273

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552
           Y +NG  + A  + + M ++ +     ++  V+ G  H   + E + +F+ M        
Sbjct: 274 YVQNGDLKNARKLFDEMPEKNV----ASWNSVVTGYCHCYRMSEARELFDQM-------P 322

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG-----------N 601
           +R   S M+ + G   I D  E              W   ++ CR              +
Sbjct: 323 ERNSVSWMVMISGYVHISDYWE-------------AWDVFVKMCRTVARPDQSIFVVVLS 369

Query: 602 EIIGRRVANILMELEPV--------DFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            I G     ++  L P+        D  V S + N Y+  G  +++M   ET   R
Sbjct: 370 AITGLDDLELIGSLRPIAIKTGYEGDVVVGSAILNAYTRNGSLDLAMHFFETMPER 425


>gi|302810303|ref|XP_002986843.1| hypothetical protein SELMODRAFT_124816 [Selaginella moellendorffii]
 gi|300145497|gb|EFJ12173.1| hypothetical protein SELMODRAFT_124816 [Selaginella moellendorffii]
          Length = 845

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 184/638 (28%), Positives = 334/638 (52%), Gaps = 15/638 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML   ++P   T   +   C+S     + L+  +  +   + +   +N +I+ F K G L
Sbjct: 218 MLLEGVVPNNITFLAVLAACSS--ARDADLVYGNVVEAEWETDTMVANASINMFSKCGCL 275

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           + A  +F  M   D+ ++N +++   +     +AL L+  M S  +    +T    LS C
Sbjct: 276 DRAHDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPSE-VAVDKTTLVIALSTC 334

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           +      +G  IH RV  LG   ++  G+ LV +Y R G    A  +FD +  +N+ +WN
Sbjct: 335 AAPESLEDGKSIHSRVARLGLETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWN 394

Query: 181 LMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            M+ A+  + S     L ++  M  +GV P   +   +V       +   GKQLH  ++ 
Sbjct: 395 NMIAAYGRDESLHSRALEIFRLMLLDGVRPTRTTALNVVSAVECQSV---GKQLHGWIVD 451

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  + F+ +ALV+ Y   GSL +A++ F+ I   DV +WN+IV +   +    +ALE
Sbjct: 452 TG-LYSDSFIGSALVNMYERTGSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALE 510

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F RM L     +  +F+  L+  S    V +G+++HG + + G +  + +V +AL  MY
Sbjct: 511 WFSRMLLEGASGNRATFLLALSAVS-PDRVSYGRKLHGLIAESGLEADN-NVANALISMY 568

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +C  +E +   F+    +S+    S++ + +  G+ ++A+++F  M  E    D VT +
Sbjct: 569 ARCKSLEDARNTFDRLEDKSIVSWTSVIAACVDLGSCQEAIDLFQRMELEP---DRVTFT 625

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           T L+A ++ ++   G  +L+H  A + G ESN+ V+ +L+  +S+ G++  + ++FE + 
Sbjct: 626 TVLEACTIVSAHREG--KLVHSRARELGLESNVFVATALIHMHSKFGNLGEARRIFEAVE 683

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           +P + C+ +++ GY++ G  +  +D    M QRG+ PD +TFL V++ C+H+G+V++G  
Sbjct: 684 APTLACWNAMLGGYAQTGHSQSVIDFFHAMQQRGVAPDHITFLAVVSACSHAGLVEKGAR 743

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F SM   YG+    + Y C+ID+L RAG L++A + LQ  P G   + W +LL +C++ 
Sbjct: 744 TFASMGPDYGVGHGLEDYGCLIDLLARAGQLEEAYDFLQGMPCGPSDVTWKTLLAACKIQ 803

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           G+   G   A  ++E EP   A + ++S   S  GE E
Sbjct: 804 GDVRRGSAAARSVIEREPYGAAAFVELSYMSSIAGEEE 841



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 153/576 (26%), Positives = 285/576 (49%), Gaps = 23/576 (3%)

Query: 6   LLPRVRTITTLAPTCTSIV--PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           +LP   T  ++   C S+    L   L++D     N + ++   N  +    K   L+ A
Sbjct: 125 VLPDRVTFISILNACESLAQGELVHRLIVD----KNLESDVVIGNALMKMLAKCYDLDGA 180

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
            + F  MP RD++++  +++   +  H  +A   Y  M+  G+  +  TF +VL+ CS+A
Sbjct: 181 ARFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSA 240

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
               +   ++  V+   +  +  + +  ++++ + G   RA D+F  +   ++ +WN M+
Sbjct: 241 ---RDADLVYGNVVEAEWETDTMVANASINMFSKCGCLDRAHDVFHRMKRWDVKSWNAMV 297

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
            A  +     E L ++ +M +E V  +  +    +  C+    L++GK +HS V +LG +
Sbjct: 298 AALAQHGFSSEALELFRRMPSE-VAVDKTTLVIALSTCAAPESLEDGKSIHSRVARLG-L 355

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA-DYDLIFDALELFF 302
           + ++    ALV  YS CG L EA++ FD I   +V+SWN++++ Y  D  L   ALE+F 
Sbjct: 356 ETDVVAGTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHSRALEIFR 415

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M L   RP+  +    LN  S       GKQ+HG++   G  +    + SAL +MY + 
Sbjct: 416 LMLLDGVRPTRTT---ALNVVSAVECQSVGKQLHGWIVDTGL-YSDSFIGSALVNMYERT 471

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +  +  VFE    R +   N+++   +  G  ++A+E F  M+ EG   +  T    L
Sbjct: 472 GSLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATF---L 528

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            ALS  +   +   R LH    +SG E++  V+ +L+  Y+RC  +E +   F+++   +
Sbjct: 529 LALSAVSPDRVSYGRKLHGLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLEDKS 588

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V +TS++      G  +EA+D+ + M    L PD+VTF  VL  C      +EG+LV +
Sbjct: 589 IVSWTSVIAACVDLGSCQEAIDLFQRM---ELEPDRVTFTTVLEACTIVSAHREGKLVHS 645

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
             + + G++++    + +I M  + G L +A  + +
Sbjct: 646 RAREL-GLESNVFVATALIHMHSKFGNLGEARRIFE 680



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 142/576 (24%), Positives = 270/576 (46%), Gaps = 41/576 (7%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           F+K   ++ A ++F++M  R MV +  +++         +A   +  M   G+     TF
Sbjct: 73  FIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLPDRVTF 132

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            S+L+ C +     +G  +H  ++      ++ IG+ L+ +  +      A   F  +P 
Sbjct: 133 ISILNACES---LAQGELVHRLIVDKNLESDVVIGNALMKMLAKCYDLDGAARFFQRMPR 189

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++ +W  M+ A+       E    Y +M  EGV PN ++F  ++  CS      +   +
Sbjct: 190 RDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSAR---DADLV 246

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           + +V++  W + +  VANA ++ +S CG L  A   F  +   DV SWN++V+  A +  
Sbjct: 247 YGNVVEAEW-ETDTMVANASINMFSKCGCLDRAHDVFHRMKRWDVKSWNAMVAALAQHGF 305

Query: 294 IFDALELFFRM--QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
             +ALELF RM  ++   + ++   V  L+  +   ++  GK IH  V +LG +   V  
Sbjct: 306 SSEALELFRRMPSEVAVDKTTL---VIALSTCAAPESLEDGKSIHSRVARLGLETDVV-A 361

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL-----LHSGNIKDAVEMFGFM 406
            +AL  MY +C  +  +  VF+   G+++   N+++ +      LHS     A+E+F  M
Sbjct: 362 GTALVTMYSRCGDLGEARRVFDGILGKNVVSWNNMIAAYGRDESLHS----RALEIFRLM 417

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           + +G+     T +T L  +S     ++G  + LH   + +G  S+  +  +L++ Y R G
Sbjct: 418 LLDGV---RPTRTTALNVVSAVECQSVG--KQLHGWIVDTGLYSDSFIGSALVNMYERTG 472

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +  + +VFEKI   +V  + +I+     +G  REAL+    M+  G   ++ TFL  L+
Sbjct: 473 SLGDARRVFEKIIERDVFAWNAIVGVCVGHGQPREALEWFSRMLLEGASGNRATFLLALS 532

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
             +   +    +L  + + +  G++AD    + +I M  R   L+ A     +       
Sbjct: 533 AVSPDRVSYGRKL--HGLIAESGLEADNNVANALISMYARCKSLEDARNTFDRLEDKS-I 589

Query: 587 MMWSSLLRSCRVHGN-----EIIGRRVANILMELEP 617
           + W+S++ +C   G+     ++  R      MELEP
Sbjct: 590 VSWTSVIAACVDLGSCQEAIDLFQR------MELEP 619



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/380 (21%), Positives = 184/380 (48%), Gaps = 13/380 (3%)

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  +V  C+   LL E   ++S +   G + ++ F   ++V  +  C S+ +A + F+ +
Sbjct: 31  FLKLVNLCAERKLLHEATSVYSSIQAQG-ILLDGFFGASVVRMFIKCRSIHDASRVFEQM 89

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
               ++ W S+V+ + D + +  A   FFRMQL    P   +F+  LN          G+
Sbjct: 90  LDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVLPDRVTFISILNACESLAQ---GE 146

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            +H  +     +   V + +AL  M  KC  ++ +   F+  P R +     ++T+   +
Sbjct: 147 LVHRLIVDKNLE-SDVVIGNALMKMLAKCYDLDGAARFFQRMPRRDVISWTGMVTAYARN 205

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G+I +A   +  M+ EG+  + +T    L A S +  A+     L++   +++ +E++  
Sbjct: 206 GHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSARDAD-----LVYGNVVEAEWETDTM 260

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V+ + ++ +S+CG ++ +H VF ++   +V  + +++   +++G   EAL++   M    
Sbjct: 261 VANASINMFSKCGCLDRAHDVFHRMKRWDVKSWNAMVAALAQHGFSSEALELFRRMPSEV 320

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
            + DK T +  L+ C     +++G+ + + +  + G++ D    + ++ M  R G L +A
Sbjct: 321 AV-DKTTLVIALSTCAAPESLEDGKSIHSRVARL-GLETDVVAGTALVTMYSRCGDLGEA 378

Query: 574 EELLQQTPGGGDCMMWSSLL 593
             +      G + + W++++
Sbjct: 379 RRVFDGIL-GKNVVSWNNMI 397



 Score = 98.6 bits (244), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 126/249 (50%), Gaps = 12/249 (4%)

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +++  M+ KC  I  +  VFE    RS+    S++T+ +   ++  A   F  M  EG+ 
Sbjct: 67  ASVVRMFIKCRSIHDASRVFEQMLDRSMVLWTSMVTAFVDDEDVDRAWLFFFRMQLEGVL 126

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D VT  + L A       +L    L+H   +    ES++ +  +LM   ++C  ++ + 
Sbjct: 127 PDRVTFISILNACE-----SLAQGELVHRLIVDKNLESDVVIGNALMKMLAKCYDLDGAA 181

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           + F+++P  +V+ +T ++  Y+RNG   EA      M+  G++P+ +TFL VLA C+ + 
Sbjct: 182 RFFQRMPRRDVISWTGMVTAYARNGHIAEAFGYYLRMLLEGVVPNNITFLAVLAACSSA- 240

Query: 533 MVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
             ++  LV+ N +++ +  + D    +  I+M  + G LD+A ++  +     D   W++
Sbjct: 241 --RDADLVYGNVVEAEW--ETDTMVANASINMFSKCGCLDRAHDVFHRMK-RWDVKSWNA 295

Query: 592 LLRSCRVHG 600
           ++ +   HG
Sbjct: 296 MVAALAQHG 304


>gi|449500331|ref|XP_004161068.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 710

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 184/662 (27%), Positives = 339/662 (51%), Gaps = 7/662 (1%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLNSAK 64
           L P+ R+   L   CT    L     + +        + +Y +N  ++ + K G +  AK
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQA--LYLYDEMVSHGIKESASTFSSVLSVCSN 122
            +F+ +  +D+V++N LI+G  +      +  + L+  M +     +  TFS V +  S+
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
           +     G+Q H   +      ++++GS L+++Y ++G  + A  +FD +PERN  +W  +
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  +       E   ++  M+ E    +   +  ++   ++  L+  GKQ+H   +K G 
Sbjct: 186 ISGYAMERMAFEAWELFXLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           + +   V NALV  Y  CG L +A K+F+     D I+W+++++ YA      +AL LF+
Sbjct: 246 LSI-ASVGNALVTMYGKCGCLDDALKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 304

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M L   +PS  +FV  +N  S  G +  GKQIHGY  K G++   ++  +AL DMY KC
Sbjct: 305 NMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYE-CQIYFMTALVDMYAKC 363

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +  +   F+      +    S+++    +G  + A+ ++  M  E I   E+T+++ L
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSMISGYAQNGENETALTLYCRMQMERIMPHELTMASVL 423

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           +A S  A+   G  + +H   IK GF   + +  +L   Y++CG +E  + VF ++PS +
Sbjct: 424 RACSSLAALEQG--KQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRD 481

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           ++ + ++++G S+NG G +AL++ E +      PD VTF+ VL+ C+H G+V+ G++ F 
Sbjct: 482 IMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFR 541

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            M   +GI    +HY+CM+D+L RAG L + +E ++         +W  LL +CR + N 
Sbjct: 542 MMLDEFGIVPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNY 601

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            +G      LMEL   + + Y  +S+ Y+ +G  +   ++R     R + ++ G S IE+
Sbjct: 602 ELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIEL 661

Query: 663 NS 664
            S
Sbjct: 662 KS 663


>gi|147819178|emb|CAN71462.1| hypothetical protein VITISV_018656 [Vitis vinifera]
          Length = 787

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 176/621 (28%), Positives = 332/621 (53%), Gaps = 33/621 (5%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++++ N  ++ +VKS  L  A KLFDEMP R+ +++  LI G  +     +A+ L+  +
Sbjct: 71  LDLFAWNILLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRL 130

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G + +   F+++L +  +      G  IH  +  LG   N ++G+ L+D Y   G  
Sbjct: 131 HREGHELNPFVFTTILKLLVSMDCGELGWGIHACIFKLGHESNAFVGTALIDAYSVCGRV 190

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A ++FD +  +++ +W  M+  F E     E L+++++M+  G +PN  +F  + + C
Sbjct: 191 DVAREVFDGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKAC 250

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                 D GK +H   +K  + +++++V  AL+D Y+  G + +A+ +F+ IP  DVI W
Sbjct: 251 LGLEAFDVGKSVHGCALKSRY-ELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPW 309

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           + +++ YA  D   +A+E+FF+M+     P+  +F   L   +    +  G QIH +V K
Sbjct: 310 SFMIARYAQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIK 369

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS-LECCNSLMTSLLHSGNIKDAV 400
           +G  H  V V +AL D+Y KC  +E+S+ +F  +P R+ +   N+++   +  G+ + A+
Sbjct: 370 IGL-HSDVFVSNALMDVYAKCGRMENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKAL 428

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M++  +   EVT S+ L+A +  A+   G    +H   +K+ F+ +I V+ +L+D
Sbjct: 429 RLFLNMLEYRVQATEVTYSSALRACASLAALEPG--LQIHSLTVKTTFDKDIVVTNALID 486

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG I+ +  VF+ +   + V + ++++GYS +G+                      
Sbjct: 487 MYAKCGSIKDARLVFDLMNKQDEVSWNAMISGYSMHGL---------------------- 524

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
                  C ++G++ +GQ  F SM   +GI+   +HY+CM+ +LGR G LDKA +L+ + 
Sbjct: 525 ------ACANAGLLDQGQAYFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEI 578

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P     M+W +LL +C +H +  +GR  A  ++E+EP D A +  +SN Y+    ++   
Sbjct: 579 PFQPSVMVWRALLGACVIHNDIELGRISAQHVLEMEPQDKATHVLLSNMYATAKRWDNVA 638

Query: 641 QIRETALARKLTRDIGHSLIE 661
            +R+    + + ++ G S IE
Sbjct: 639 SVRKNMKRKGVKKEPGLSWIE 659



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 75/254 (29%), Positives = 144/254 (56%), Gaps = 2/254 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L++Y     +D + KSG ++ A+  F+E+P +D++ ++ +I+   +    K+A+ ++ +
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARXAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQ 331

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +  +  TF+SVL  C+       G QIHC V+ +G   ++++ + L+D+Y + G 
Sbjct: 332 MRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGR 391

Query: 161 SVRALDLFDELPERNLAT-WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
              ++ LF E P RN  T WN ++    +L   ++ LR++  M    V+   +++   +R
Sbjct: 392 MENSMXLFAESPHRNDVTPWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALR 451

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+ G Q+HS  +K  + D +I V NAL+D Y+ CGS+ +A+  FD +   D +
Sbjct: 452 ACASLAALEPGLQIHSLTVKTTF-DKDIVVTNALIDMYAKCGSIKDARLVFDLMNKQDEV 510

Query: 280 SWNSIVSIYADYDL 293
           SWN+++S Y+ + L
Sbjct: 511 SWNAMISGYSMHGL 524


>gi|296090287|emb|CBI40106.3| unnamed protein product [Vitis vinifera]
          Length = 590

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 164/553 (29%), Positives = 306/553 (55%), Gaps = 8/553 (1%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T SS+L  CS       G+ +H  VL  G   ++++ + ++++Y + G +  A  +FDE+
Sbjct: 5   TLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFDEM 64

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            E+NL +W+ M+  + +   P   + +Y++M    + PN   F  ++  C+    +  G+
Sbjct: 65  FEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTLGQ 121

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           ++HS  +K G+  ++ FV+N+L+  Y  C    +A   F   P  + +S+N++++ + + 
Sbjct: 122 KIHSRSLKFGYESIS-FVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVEN 180

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
             +   LE F  M+     P   +F+  L   + T N+  G ++H    KL  D  +  +
Sbjct: 181 QQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLNLD-STPFI 239

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-G 410
            + +  MY + N+I+ +   F     + +   N+L+ +  H  +    + +F  M +E  
Sbjct: 240 GNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEETN 299

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D+ T ++ L A +  AS + G  + +H   +++    ++ V  +L++ Y++CG I  
Sbjct: 300 VRPDDFTFTSALAACAGLASMSHG--KQIHAHLMRTRLYQDLGVGNALVNMYAKCGCIGY 357

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           ++ +F K+   N+V + +I+ G+  +G+G  A+++ E M   G+ PD VTF+ +L  CNH
Sbjct: 358 AYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTACNH 417

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +G+V +GQL FNSM+  YGI  D +H+SC+IDMLGRAG L++AEE +++ P   D ++  
Sbjct: 418 AGLVDKGQLYFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWNDPVVLV 477

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           SLL + R+HG+ +IG R+A  L++L+PV  + Y  +SN Y+  G ++   + R+      
Sbjct: 478 SLLSASRLHGDVVIGERLAKWLLKLQPVTTSPYVLLSNLYASDGMWDSVAEARKRLKGSG 537

Query: 651 LTRDIGHSLIEVN 663
           L ++ GHSLIEVN
Sbjct: 538 LKKEPGHSLIEVN 550



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/477 (27%), Positives = 228/477 (47%), Gaps = 12/477 (2%)

Query: 10  VRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFD 68
             T+++L   C+    L   L L +   +   Q +++ SN  ++ + K GH   A+++FD
Sbjct: 3   TETLSSLLHHCSKTKALRCGLSLHAAVLKTGTQSDVFMSNHVLNMYAKCGHTTFARQVFD 62

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           EM  +++V+++ +ISG  +   P+ A+ LY +M    +  +   F+SV+S C++    T 
Sbjct: 63  EMFEKNLVSWSAMISGYDQAGEPQMAIDLYSQMF---LVPNEYVFASVISACASLSAVTL 119

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G +IH R L  G+    ++ + L+ +YM+      AL +F   PE N  ++N ++  F E
Sbjct: 120 GQKIHSRSLKFGYESISFVSNSLISMYMKCNQCSDALSVFTNTPEPNCVSYNALITGFVE 179

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
             + +  L  +  M+ +G+ P+  +F  ++  C+    L  G +LH   +KL  +D   F
Sbjct: 180 NQQLERGLEFFKLMRQQGLIPDRFAFMGVLGICTTTENLKRGAELHCQTVKLN-LDSTPF 238

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLC 307
           + N ++  YS    + EA+K+F  I   DVISWN++++  +  D     L +F  M +  
Sbjct: 239 IGNVIITMYSELNLIQEAEKAFRLIEEKDVISWNTLIAACSHCDDHAKGLRVFKHMTEET 298

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSVHVQSALTDMYGKCNVI 365
             RP   +F   L   +   ++  GKQIH ++  T+L  D G   V +AL +MY KC  I
Sbjct: 299 NVRPDDFTFTSALAACAGLASMSHGKQIHAHLMRTRLYQDLG---VGNALVNMYAKCGCI 355

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  +F      +L   N+++    + G  + AVE+F  M   GI  D VT    L A 
Sbjct: 356 GYAYDIFSKMVHHNLVSWNTIIAGFGNHGLGERAVELFEQMNASGIRPDSVTFIGLLTAC 415

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           + +   + G     +      G   +I     L+D   R G +  + +   K P  N
Sbjct: 416 NHAGLVDKGQL-YFNSMEETYGIAPDIEHFSCLIDMLGRAGRLNEAEEYMRKFPFWN 471


>gi|225441775|ref|XP_002277828.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g33680-like [Vitis vinifera]
          Length = 773

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 183/624 (29%), Positives = 331/624 (53%), Gaps = 5/624 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q + +  N  ++ + K   L  A+ +FDEM  R+ +T+  LI G  +    +    +  E
Sbjct: 110 QNDAFRGNNLVNLYGKFNKLGDAQSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIARE 169

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G + +  T S +L  C +      G QIH  V+  GF  ++++G+ L+ +Y R G 
Sbjct: 170 MYWVGEEFNEHTCSVILQACDSLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGD 229

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  ++  L  +++   N M+  + +    ++ + ++  +   G+EPN  +F  ++  
Sbjct: 230 LGAAEKVYSNLAYKDVRCLNFMISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISA 289

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+  + ++  + LH   IK G  D  I V NA+V  Y   G L EA+KSF  +   +++S
Sbjct: 290 CNGDIDVEVLRVLHGMCIKCGCGD-EISVGNAIVSVYVKHGMLEEAEKSFCGMGERNLVS 348

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +++S Y        ALE F ++           F   L+  S   N+  G QIHG+V 
Sbjct: 349 WTALLSGYVKNGNGKKALEGFSQILELGVGFDSCCFATLLDGCSECKNLGLGLQIHGFVV 408

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLG+ H  V V +AL D+Y KC  + S+  VF S   +++   N++++  +   + +DA+
Sbjct: 409 KLGYVH-DVSVGTALIDLYAKCRKLRSARLVFHSLLDKNIVSFNAILSGYI-GADEEDAM 466

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  +    I  D VT +  L   +  A    G C  LH   IK+GFE+N +V  +++ 
Sbjct: 467 ALFSQLRLADIKPDSVTFARLLSLSADQACLVKGKC--LHAYIIKTGFEANPSVGNAVIT 524

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG I  + Q+F  +   + + + ++++ Y+ +G GR+AL + E M +   +PD++T
Sbjct: 525 MYAKCGSIGDACQLFYSMNYLDSISWNAVISAYALHGQGRKALILFEEMKKEEFVPDEIT 584

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
            L VL  C++SG+++EG  +FN M+S YGI  + +H++CM+D+LGRAG L +A   + ++
Sbjct: 585 ILSVLQACSYSGLLEEGFCLFNDMESKYGIKPEIEHFACMVDLLGRAGYLSEAMSFINRS 644

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P  G  ++W +L+  C++HG+   G+  +  L++L P +   Y  VSN Y+  G    + 
Sbjct: 645 PFSGSPLLWRTLVHVCKLHGDLNFGQIASKHLLDLAPEEAGSYILVSNLYAGGGMLNEAA 704

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
           ++R      K++++ G S IE+++
Sbjct: 705 RVRTVMNDLKVSKEAGSSWIEIDN 728



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 129/512 (25%), Positives = 244/512 (47%), Gaps = 18/512 (3%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +  +L +   +G    G  IH  +  LG+  + + G+ LV+LY +      A  +FDE+ 
Sbjct: 81  WPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNNLVNLYGKFNKLGDAQSVFDEML 140

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            RN  TW  +++   +++  + V R+  +M   G E N  +   +++ C     L  G+Q
Sbjct: 141 VRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQACDSLENLVRGEQ 200

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  VIK G+ D ++FV  +L+  YS CG L  A+K +  +   DV   N ++S Y    
Sbjct: 201 IHGFVIKRGF-DEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNFMISEYGKAG 259

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
               A+ +F  +      P+  +F   ++  +   +V   + +HG   K G     + V 
Sbjct: 260 CGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDVEVLRVLHGMCIKCGCGD-EISVG 318

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +A+  +Y K  ++E +   F     R+L    +L++  + +GN K A+E F  +++ G+G
Sbjct: 319 NAIVSVYVKHGMLEEAEKSFCGMGERNLVSWTALLSGYVKNGNGKKALEGFSQILELGVG 378

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D    +T L     S   NLG    +H   +K G+  +++V  +L+D Y++C  +  + 
Sbjct: 379 FDSCCFATLLDG--CSECKNLGLGLQIHGFVVKLGYVHDVSVGTALIDLYAKCRKLRSAR 436

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI---PDKVTFLCVLA-GC 528
            VF  +   N+V F +I++GY    +G +  D + +  Q  L    PD VTF  +L+   
Sbjct: 437 LVFHSLLDKNIVSFNAILSGY----IGADEEDAMALFSQLRLADIKPDSVTFARLLSLSA 492

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           + + +VK   L    +K+  G +A+    + +I M  + G +  A +L        D + 
Sbjct: 493 DQACLVKGKCLHAYIIKT--GFEANPSVGNAVITMYAKCGSIGDACQLFYSM-NYLDSIS 549

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620
           W++++ +  +HG    GR+   +  E++  +F
Sbjct: 550 WNAVISAYALHGQ---GRKALILFEEMKKEEF 578



 Score = 91.3 bits (225), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 71/293 (24%), Positives = 140/293 (47%), Gaps = 5/293 (1%)

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
           + P    + + L  +  +G++  G+ IH ++ KLG+ + +    + L ++YGK N +  +
Sbjct: 74  QNPLFNDWPQLLQISIGSGDLMLGQAIHAFLAKLGYQNDAFRGNN-LVNLYGKFNKLGDA 132

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
            +VF+    R+     +L+   L   +++    +   M   G   +E T S  L+A    
Sbjct: 133 QSVFDEMLVRNTITWTTLIKGHLQVNDVESVFRIAREMYWVGEEFNEHTCSVILQA--CD 190

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           +  NL     +H   IK GF+ ++ V  SL+  YSRCG +  + +V+  +   +V C   
Sbjct: 191 SLENLVRGEQIHGFVIKRGFDEDVFVGTSLISMYSRCGDLGAAEKVYSNLAYKDVRCLNF 250

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           +++ Y + G G +A+ +   ++  GL P+  TF  V++ CN    V E   V + M    
Sbjct: 251 MISEYGKAGCGEKAIGVFLHLLGSGLEPNDYTFTNVISACNGDIDV-EVLRVLHGMCIKC 309

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           G   +    + ++ +  + G+L++AE+      G  + + W++LL     +GN
Sbjct: 310 GCGDEISVGNAIVSVYVKHGMLEEAEKSFCGM-GERNLVSWTALLSGYVKNGN 361


>gi|242081959|ref|XP_002445748.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
 gi|241942098|gb|EES15243.1| hypothetical protein SORBIDRAFT_07g025050 [Sorghum bicolor]
          Length = 760

 Score =  295 bits (755), Expect = 6e-77,   Method: Compositional matrix adjust.
 Identities = 183/631 (29%), Positives = 328/631 (51%), Gaps = 22/631 (3%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++ SN  +  +V+     SA+ LFD MP RD+VT+N LI+G       + AL  + +   
Sbjct: 10  LFLSNNLLAAYVRCADTRSARLLFDGMPRRDVVTWNTLIAGYATQGSARSALGAFRDARR 69

Query: 104 HG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM--RMGP 160
            G +     T+++VL+ C  AG +  G   H   +  G     ++ + ++D+Y   RM  
Sbjct: 70  DGAVAVDRFTYAAVLAACGGAGDWRSGRAAHGLAVVSGLARTAFVSNSVIDMYAKCRMID 129

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
            VR    FD   ER+  +WNL+L A+  +  P+    +   M   GVE +  +   +++ 
Sbjct: 130 EVRLA--FDRAEERDEVSWNLLLSAYVRMGWPEVAANVLVWMHRSGVELDAFALGGILKA 187

Query: 221 CS-IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           CS +    D  + LH  VIK+G +D+++FV + +VD Y+  G L EA K F  IP  +V+
Sbjct: 188 CSELEDSEDVRRMLHGCVIKVG-LDLDVFVGSTMVDMYAKNGGLEEAIKVFGSIPSQNVV 246

Query: 280 SWNSIVSIYADY------DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
            +N++++ +A        ++  +A+ ++  M   R RPS  +F   L   + T  V   +
Sbjct: 247 IYNTMIAGFARLGNDPCPEIRMEAVRIYSNMFRRRIRPSKFTFKSVLEVCNLTNAVRCWR 306

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           QIH +V   GF+     + +AL ++Y K  +++ S+  F   P + +    S++T+ + +
Sbjct: 307 QIHAHVILFGFEDDEF-IGNALINLYSKARLVDDSLRCFHRTPKQEIFTWTSMITAFVRN 365

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFES 450
            +   A+ +F  +   G+  D+ T+S+ +     +A A+L    +C  +HC A+KSGF+ 
Sbjct: 366 EHSDKALNLFKGLRYTGVEPDQFTMSSVM-----NACADLSMPIACEQIHCYAVKSGFDR 420

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
                 S ++ Y   G ++ + + FE+IPS +   ++ ++  Y+ +G  REAL + + M 
Sbjct: 421 FTLCGNSQIEMYRCTGDLKAAKKTFERIPSLDTFSWSQMILSYAVHGHEREALLLFKKMR 480

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
              +I ++  FL VL  C+H G++ EG   + SM S Y    D +H +CM+D+LG  G +
Sbjct: 481 DCSVIINEFAFLAVLVACSHQGLIDEGFRHYESMVSDYSFVPDVKHIACMVDLLGHVGKV 540

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
             AE+ +  +    D ++W +LLR+CR+HG++  G +    LM LEP   + Y  + N Y
Sbjct: 541 ADAEDFINSSGLENDSVLWHTLLRACRIHGDKDRGIKTGEKLMTLEPFAASSYVMLYNLY 600

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            + G+  ++M+ R     R +T++ G S  E
Sbjct: 601 MDAGKISLAMRTRGQMRERGMTKESGVSWAE 631



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 183/400 (45%), Gaps = 43/400 (10%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH---PK---QAL 95
           L+++  +  +D + K+G L  A K+F  +P++++V YN +I+G  +  +   P+   +A+
Sbjct: 212 LDVFVGSTMVDMYAKNGGLEEAIKVFGSIPSQNVVIYNTMIAGFARLGNDPCPEIRMEAV 271

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            +Y  M    I+ S  TF SVL VC+         QIH  V+  GF  + +IG+ L++LY
Sbjct: 272 RIYSNMFRRRIRPSKFTFKSVLEVCNLTNAVRCWRQIHAHVILFGFEDDEFIGNALINLY 331

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            +      +L  F   P++ + TW  M+ AF      D+ L ++  ++  GVEP+  +  
Sbjct: 332 SKARLVDDSLRCFHRTPKQEIFTWTSMITAFVRNEHSDKALNLFKGLRYTGVEPDQFTMS 391

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  C+   +    +Q+H + +K G+ D      N+ ++ Y   G L  AKK+F+ IP 
Sbjct: 392 SVMNACADLSMPIACEQIHCYAVKSGF-DRFTLCGNSQIEMYRCTGDLKAAKKTFERIPS 450

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D  SW+ ++  YA +    +AL LF +M+ C    +  +F+  L   S  G +      
Sbjct: 451 LDTFSWSQMILSYAVHGHEREALLLFKKMRDCSVIINEFAFLAVLVACSHQGLI------ 504

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL-HSG 394
                    D G  H +S ++D              +   P      C   M  LL H G
Sbjct: 505 ---------DEGFRHYESMVSD--------------YSFVPDVKHIAC---MVDLLGHVG 538

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
            + DA +   F+   G+  D V   T L+A  +    + G
Sbjct: 539 KVADAED---FINSSGLENDSVLWHTLLRACRIHGDKDRG 575



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 118/487 (24%), Positives = 216/487 (44%), Gaps = 38/487 (7%)

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
           ++  G+   L++ + L+  Y+R   +  A  LFD +P R++ TWN ++  +         
Sbjct: 1   MIRAGYRPGLFLSNNLLAAYVRCADTRSARLLFDGMPRRDVVTWNTLIAGYATQGSARSA 60

Query: 196 LRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
           L  +   + +G V  +  ++  ++  C        G+  H   +  G +    FV+N+++
Sbjct: 61  LGAFRDARRDGAVAVDRFTYAAVLAACGGAGDWRSGRAAHGLAVVSG-LARTAFVSNSVI 119

Query: 255 DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
           D Y+ C  + E + +FD     D +SWN ++S Y        A  +   M         R
Sbjct: 120 DMYAKCRMIDEVRLAFDRAEERDEVSWNLLLSAYVRMGWPEVAANVLVWMH--------R 171

Query: 315 SFVEFLNFASRTGNVYFG-----------KQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           S VE   FA   G +              + +HG V K+G D   V V S + DMY K  
Sbjct: 172 SGVELDAFA--LGGILKACSELEDSEDVRRMLHGCVIKVGLDL-DVFVGSTMVDMYAKNG 228

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK------DAVEMFGFMVDEGIGLDEVT 417
            +E ++ VF S P +++   N+++      GN        +AV ++  M    I   + T
Sbjct: 229 GLEEAIKVFGSIPSQNVVIYNTMIAGFARLGNDPCPEIRMEAVRIYSNMFRRRIRPSKFT 288

Query: 418 LSTTLKALSVSASANLGSC-RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
             + L+  +++   N   C R +H   I  GFE +  +  +L++ YS+   ++ S + F 
Sbjct: 289 FKSVLEVCNLT---NAVRCWRQIHAHVILFGFEDDEFIGNALINLYSKARLVDDSLRCFH 345

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM-VK 535
           + P   +  +TS++  + RN    +AL++ + +   G+ PD+ T   V+  C    M + 
Sbjct: 346 RTPKQEIFTWTSMITAFVRNEHSDKALNLFKGLRYTGVEPDQFTMSSVMNACADLSMPIA 405

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
             Q+   ++KS  G D      +  I+M    G L  A++  ++ P   D   WS ++ S
Sbjct: 406 CEQIHCYAVKS--GFDRFTLCGNSQIEMYRCTGDLKAAKKTFERIP-SLDTFSWSQMILS 462

Query: 596 CRVHGNE 602
             VHG+E
Sbjct: 463 YAVHGHE 469



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/262 (24%), Positives = 119/262 (45%), Gaps = 21/262 (8%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N  +N+YS  R +DD ++          F   P +++ T+  +I+   +  H  +AL L+
Sbjct: 325 NALINLYSKARLVDDSLRC---------FHRTPKQEIFTWTSMITAFVRNEHSDKALNLF 375

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             +   G++    T SSV++ C++        QIHC  +  GF      G+  +++Y   
Sbjct: 376 KGLRYTGVEPDQFTMSSVMNACADLSMPIACEQIHCYAVKSGFDRFTLCGNSQIEMYRCT 435

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A   F+ +P  +  +W+ M+ ++       E L ++ KM+   V  N  +F  ++
Sbjct: 436 GDLKAAKKTFERIPSLDTFSWSQMILSYAVHGHEREALLLFKKMRDCSVIINEFAFLAVL 495

Query: 219 RGCSIGMLLDEG-KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-- 275
             CS   L+DEG +   S V    +V     +A  +VD     G + +A+   DFI    
Sbjct: 496 VACSHQGLIDEGFRHYESMVSDYSFVPDVKHIA-CMVDLLGHVGKVADAE---DFINSSG 551

Query: 276 --DDVISWNSIV---SIYADYD 292
             +D + W++++    I+ D D
Sbjct: 552 LENDSVLWHTLLRACRIHGDKD 573


>gi|296087156|emb|CBI33530.3| unnamed protein product [Vitis vinifera]
          Length = 614

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 175/557 (31%), Positives = 306/557 (54%), Gaps = 8/557 (1%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           FS +L  C++AG    G+ +H  ++ L     + I + L+ LY++ G    A  LFD +P
Sbjct: 62  FSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLFDTMP 121

Query: 173 ERNLATWNLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            R++ ++N M+ A    +    +++ +Y+KMK E V+PN ++F  ++  C   + L    
Sbjct: 122 RRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIALRLRG 181

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
             H+H ++ G +  N FV ++LVD Y+    L +A K+F+ I   D++SWN ++   A  
Sbjct: 182 IFHAHTVRCG-LSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARN 240

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           +    A+ +F +M     R    +    +   S+ G++  G Q HG   KLG  H    +
Sbjct: 241 NSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAH-ETPI 299

Query: 352 QSALTDMYGKCNV-IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
            +AL  MY KC   + S V +F S    ++    ++++  + +   ++A+ +F  M+  G
Sbjct: 300 YNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLG 359

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  ++ + S+ L        ANL   + +H   IKS F  +++V+ +L+D YS+CG +E 
Sbjct: 360 VRENDFSFSSILPVYG--NLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLED 417

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +H VF K+   +VV  T+++  Y ++G G+EAL++L  M   GL+PD VTFL  L  C+H
Sbjct: 418 AHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSH 477

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
            G+V+EG  VF  M   + +   R+H++C++DMLGRAG L++AE  + +     D ++W 
Sbjct: 478 GGLVEEGVRVFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWE 537

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           +LL +CRVHG  ++G + A  +MEL+P     Y  ++N Y+E G +E  + +RE  ++  
Sbjct: 538 TLLGACRVHGEMVLGEKSAQKIMELQPGRHGPYVLLANIYAERGSWEDKVMVREKLVSHG 597

Query: 651 LTRDIGHSLI--EVNSC 665
           L + +G S +  E  SC
Sbjct: 598 LKKQVGCSWVALETMSC 614



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 120/424 (28%), Positives = 197/424 (46%), Gaps = 11/424 (2%)

Query: 9   RVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           +    + +   CT    L + + + +Y  + N    I   N+ +  ++K GH++ A +LF
Sbjct: 58  KFHQFSQILQECTDAGDLRTGMSVHTYLVKLNINGFILIWNKLLSLYLKFGHIHHAHQLF 117

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALY-LYDEMVSHGIKESASTFSSVLSVCSN-AGF 125
           D MP RD+V++N +IS   +  +    L  LY +M    +K +  TF+ ++  C      
Sbjct: 118 DTMPRRDVVSFNTMISASVRNNYDALDLVGLYSKMKKEDVKPNHITFAGLIGACDGLIAL 177

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
              GI  H   +  G   N ++GS LVD Y +      A+  F+E+ E +L +WN+M+  
Sbjct: 178 RLRGI-FHAHTVRCGLSSNEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDG 236

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
               +  +  +RM+++M    V  +G +   +++ CS    L  G Q H   IKLG    
Sbjct: 237 CARNNSKEHAVRMFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAH- 295

Query: 246 NIFVANALVDFYSACGSLIEAK-KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
              + NAL+  YS C   + +  K F  I   ++ISW +++S +   +   +A+ LF  M
Sbjct: 296 ETPIYNALITMYSKCEKGVASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEM 355

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKC 362
                R +  SF   L       N+  GKQIH  + K   G D   + V +AL DMY KC
Sbjct: 356 LRLGVRENDFSFSSILPVYGNLANLEQGKQIHARIIKSWFGLD---LSVNNALIDMYSKC 412

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +E +  VF       +  C +++ S    G  K+A+E+   M  EG+  D VT    L
Sbjct: 413 GSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCL 472

Query: 423 KALS 426
            A S
Sbjct: 473 YACS 476



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 79/294 (26%), Positives = 147/294 (50%), Gaps = 2/294 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N +  +  +D + K   L  A K F+E+   D+V++N++I GC +    + A+ ++ +M+
Sbjct: 195 NEFVGSSLVDGYAKQMKLEDAIKAFNEIMELDLVSWNIMIDGCARNNSKEHAVRMFSQML 254

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++    T +S++  CS  G    G+Q H   + LG      I + L+ +Y +    V
Sbjct: 255 KGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYSKCEKGV 314

Query: 163 RA-LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            + + +F  + E N+ +W  M+  F +  + +E + ++ +M   GV  N  SF  ++   
Sbjct: 315 ASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSFSSILPVY 374

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                L++GKQ+H+ +IK  W  +++ V NAL+D YS CGSL +A   F  +   DV+S 
Sbjct: 375 GNLANLEQGKQIHARIIK-SWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSC 433

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +++  Y  +    +ALE+   M+     P   +F+  L   S  G V  G ++
Sbjct: 434 TTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVRV 487



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/297 (25%), Positives = 150/297 (50%), Gaps = 17/297 (5%)

Query: 1   MLSTKLLPRVR----TITTLAPTCTSIVPLSSSLLLDSYCQP---NPQLNIYSSNRTIDD 53
           M S  L   VR    T+T++  TC+    L   +             +  IY++  T+  
Sbjct: 249 MFSQMLKGNVRVDGFTLTSIIKTCSKPGDLKHGMQFHGSAIKLGLAHETPIYNALITMYS 308

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
             + G + S  K+F  +   +++++  +ISG  +    ++A+ L+ EM+  G++E+  +F
Sbjct: 309 KCEKG-VASPVKIFGSISEPNIISWTAMISGFMQNEQNEEAIGLFKEMLRLGVRENDFSF 367

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           SS+L V  N     +G QIH R++   FGL+L + + L+D+Y + G    A  +F ++ +
Sbjct: 368 SSILPVYGNLANLEQGKQIHARIIKSWFGLDLSVNNALIDMYSKCGSLEDAHLVFMKMGK 427

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ +   M+ ++ +  +  E L +  +MK+EG+ P+G++F   +  CS G L++EG + 
Sbjct: 428 HDVVSCTTMIMSYGQHGKGKEALEILAEMKSEGLVPDGVTFLGCLYACSHGGLVEEGVR- 486

Query: 234 HSHVIKLGWVDVNIFVANA----LVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
              V K+   D N+         +VD     G L EA+   D + ++ DV+ W +++
Sbjct: 487 ---VFKIMIEDHNLKPKREHFACVVDMLGRAGRLNEAENFIDEMGIESDVLVWETLL 540



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/147 (27%), Positives = 69/147 (46%), Gaps = 4/147 (2%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++  +N  ID + K G L  A  +F +M   D+V+   +I   G+    K+AL +  EM
Sbjct: 397 LDLSVNNALIDMYSKCGSLEDAHLVFMKMGKHDVVSCTTMIMSYGQHGKGKEALEILAEM 456

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMG 159
            S G+     TF   L  CS+ G   EG+++  +++     L       + +VD+  R G
Sbjct: 457 KSEGLVPDGVTFLGCLYACSHGGLVEEGVRVF-KIMIEDHNLKPKREHFACVVDMLGRAG 515

Query: 160 PSVRALDLFDELP-ERNLATWNLMLRA 185
               A +  DE+  E ++  W  +L A
Sbjct: 516 RLNEAENFIDEMGIESDVLVWETLLGA 542


>gi|357470275|ref|XP_003605422.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355506477|gb|AES87619.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 839

 Score =  295 bits (754), Expect = 7e-77,   Method: Compositional matrix adjust.
 Identities = 196/661 (29%), Positives = 350/661 (52%), Gaps = 40/661 (6%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGK 87
           LL       N  L+    N  I  + KS    +A  +F  M    RD+V+Y+ +IS    
Sbjct: 73  LLHHKLTTSNLPLDTLLLNSLITLYSKSNDPITAFSIFQSMENSKRDVVSYSSIISCFAN 132

Query: 88  FRHPKQALYLYDEMV-SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNL 145
            R+  +A+ ++D+++   G+  +   F++V+  C   GF+  G+ +   VL  G F  ++
Sbjct: 133 NRNCLKAVEMFDQLLLQDGVYPNEYCFTAVIRACLKGGFFKTGLCLFGFVLKTGYFDSHV 192

Query: 146 YIGSPLVDLYMRMGPSVRALD----LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201
            +G  L+D++++ G S+  L+    +FD++ E+N+ TW LM+    +    DE + ++ +
Sbjct: 193 CVGCELIDMFVK-GCSLADLESARKVFDKMREKNVVTWTLMITRLAQYGYNDEAIDLFLE 251

Query: 202 M-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           M  + G  P+  +   ++  C+    L  GK+LHS VI+ G V +++ V  +LVD Y+ C
Sbjct: 252 MLVSSGYVPDRFTLTGLISVCAEIQFLSLGKELHSWVIRSGLV-LDLCVGCSLVDMYAKC 310

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIY----ADYDLIFDALELFFRMQLCRK-RPSIRS 315
           G + EA+K FD +   +V+SW ++V+ Y      Y+   +A+ +F  M L     P+  +
Sbjct: 311 GLVQEARKVFDGMREHNVMSWTALVNGYVRGGGGYER--EAMRMFSNMLLQGGVAPNCFT 368

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
           F   L   +   +  FG+Q+HG   KLG       V + L  +Y K   +ES+   F+  
Sbjct: 369 FSGVLKACASLPDFDFGEQVHGQTIKLGLSAIDC-VGNGLVSVYAKSGRMESARKCFDVL 427

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE---------GIGLDEVTLSTTLKALS 426
             ++L     +  +++   N+KD    F    ++         G G+   T ++ L    
Sbjct: 428 FEKNL-----VSETVVDDTNVKD----FNLNSEQDLDREVEYVGSGVSSFTYASLLSG-- 476

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            +    +G    +H   +K GF ++++V+ +L+  YS+CG+ E + QVF  +   NV+ +
Sbjct: 477 AACIGTIGKGEQIHAMVVKIGFRTDLSVNNALISMYSKCGNKEAALQVFNDMEDCNVITW 536

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           TSI+NG++++G   +AL++   M++ G+ P+ VT++ VL+ C+H G++ E    F SM+ 
Sbjct: 537 TSIINGFAKHGFASKALELFYNMLETGVKPNDVTYIAVLSACSHVGLIDEAWKHFTSMRD 596

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            +GI    +HY+CM+D+LGR+G+L +A E +   P   D ++W + L SCRVH N  +G 
Sbjct: 597 NHGIVPRMEHYACMVDLLGRSGLLSEAIEFINSMPFDADALVWRTFLGSCRVHRNTKLGE 656

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSC 665
             A +++E EP D A Y  +SN Y+  G +E    IR+    +++T++ G S IEV N  
Sbjct: 657 HAAKMILEREPHDPATYILLSNLYATEGRWEDVAAIRKNMKQKQITKEAGSSWIEVENQV 716

Query: 666 H 666
           H
Sbjct: 717 H 717


>gi|326515658|dbj|BAK07075.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 796

 Score =  295 bits (754), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 178/637 (27%), Positives = 338/637 (53%), Gaps = 15/637 (2%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           + +P  +++  N  +  + + G    A++L DEMP  + V++NLLI    +   P+ +L 
Sbjct: 42  RAHPSPSLFLRNTLLAAYCRLG--GHARRLLDEMPRTNAVSFNLLIDAYSRAGQPEASLE 99

Query: 97  LYDEMV-SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            +     S G++    T+++ L+ CS AG   EG  +H   +  G    +++ + LV +Y
Sbjct: 100 TFARARRSAGVRADRFTYAAALAACSRAGRLREGKAVHALSVLEGIAGGVFVSNSLVSMY 159

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            R G   +A  +FD   ER+  +WN ++  +      D++LR++  M+  G+  N  +  
Sbjct: 160 ARCGDMGQARQVFDAADERDDVSWNALVSGYVRAGAQDDMLRVFAMMRRSGIGLNSFALG 219

Query: 216 YMVRGC--SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
            +++ C  S   ++D    +H  V+K G+ D ++F+A+A+V  Y+  G+L EA   F  +
Sbjct: 220 SVIKCCAGSDDPVMDIAAAVHGCVVKAGF-DSDVFLASAMVGMYAKKGALSEAVALFKSV 278

Query: 274 PVDDVISWNSIVS------IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
              +V+ +N++++           D++ +AL L+  +Q     P+  +F   +   +  G
Sbjct: 279 LDPNVVVFNAMIAGLCRDEAAVGTDVLREALSLYSEVQSRGMEPTEFTFSSVIRACNLAG 338

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           ++ FGKQIHG V K  F  G   + SAL D+Y     +E     F S P + +    +++
Sbjct: 339 DIEFGKQIHGQVLKHCF-QGDDFIGSALIDLYLNSGCMEDGFRCFTSVPKQDVVTWTAMI 397

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           +  + +   + A+ +F  ++  G+  D  T+S+ + A +  A A  G    + C A KSG
Sbjct: 398 SGCVQNELFERALTLFHELLGAGLKPDPFTISSVMNACASLAVARTGE--QIQCFATKSG 455

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           F    A+  S +  Y+R G +  + + F+++ S ++V ++++++ ++++G  R+AL    
Sbjct: 456 FGRFTAMGNSCIHMYARSGDVHAAVRRFQEMESHDIVSWSAVISSHAQHGCARDALRFFN 515

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M+   ++P+++TFL VL  C+H G+V EG   + +MK  Y +    +H +C++D+LGRA
Sbjct: 516 EMVDAKVVPNEITFLGVLTACSHGGLVDEGLKYYETMKEEYALSPTIKHCTCVVDLLGRA 575

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G L  AE  ++ +    + ++W SLL SCR+H +   G+ VA+ +MEL+P   A Y  + 
Sbjct: 576 GRLADAEAFIRDSIFHDEPVIWRSLLASCRIHRDMERGQLVADRIMELQPSSSASYVNLY 635

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           N Y + GE  ++ +IR+    R + ++ G S IE+ S
Sbjct: 636 NIYLDAGELSLASKIRDVMKERGVKKEPGLSWIELRS 672


>gi|302754942|ref|XP_002960895.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
 gi|300171834|gb|EFJ38434.1| hypothetical protein SELMODRAFT_74842 [Selaginella moellendorffii]
          Length = 903

 Score =  295 bits (754), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 185/615 (30%), Positives = 320/615 (52%), Gaps = 20/615 (3%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G + SA  LF++M  RD+V++N  I+   +      AL L+  M   G++ +  T    L
Sbjct: 177 GCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIAL 235

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           +VC+      +   IH  V   G    L + + L   Y R+G   +A ++FD   ER++ 
Sbjct: 236 TVCAT---IRQAQAIHFIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVV 292

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN ML A+ +     E   ++ +M  EG+ P+ ++      GCS    L  G+ +H   
Sbjct: 293 SWNAMLGAYAQHGHMSEAALLFARMLHEGISPSKVTLVNASTGCSS---LRFGRMIHGCA 349

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           ++ G +D +I + NAL+D Y+ CGS  EA+  F  IP +  +SWN++++  +    +  A
Sbjct: 350 LEKG-LDRDIVLGNALLDMYTRCGSPEEARHLFKRIPCN-AVSWNTMIAGSSQKGQMKRA 407

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFAS----RTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
           +ELF RMQL    P   +++  L   +        +  G+++H  +   G+      + +
Sbjct: 408 VELFQRMQLEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPA-IGT 466

Query: 354 ALTDMYGKCNVIESSVAVFESAP---GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           A+  MY  C  I+ + A F+         +   N++++SL   G+ K A+  F  M   G
Sbjct: 467 AVVKMYASCGAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHG 526

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  +++T    L A + +A+   G   ++H     SG ESN+ V+ +L   Y RCG +E 
Sbjct: 527 VAPNQITCVAVLDACAGAAALTEGE--IVHDHLRHSGMESNLFVATALASMYGRCGSLES 584

Query: 471 SHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           + ++FEK+    +VV F +++  YS+NG+  EAL +   M Q G  PD+ +F+ VL+ C+
Sbjct: 585 AREIFEKVAVERDVVIFNAMIAAYSQNGLAGEALKLFWRMQQEGSRPDEQSFVSVLSACS 644

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H G+  EG  +F SM+  YGI     HY+C +D+LGRAG L  AEEL++        ++W
Sbjct: 645 HGGLADEGWEIFRSMRQSYGIAPSEDHYACAVDVLGRAGWLADAEELIRCMDVKPTVLVW 704

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +CR + +   GR   +++ EL+P D + Y  +SN  +  G+++ + ++R    +R
Sbjct: 705 KTLLGACRKYRDVDRGRLANSMVRELDPGDESAYVVLSNILAGAGKWDEAAEVRTEMESR 764

Query: 650 KLTRDIGHSLIEVNS 664
            L ++ G S IE+ S
Sbjct: 765 GLRKEAGKSWIEIKS 779



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 136/551 (24%), Positives = 276/551 (50%), Gaps = 16/551 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  ++K   L   +++F  +  RD  ++  +I+   +    K+A+ ++  M   G++
Sbjct: 66  NHLLRLYLKCESLGDVEEVFSRLEVRDEASWTTIITAYTEHGQAKRAIGMFHRMQQEGVR 125

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             A TF +VL  C+  G  ++G  IH  ++  G      + + L+ +Y   G    A+ L
Sbjct: 126 CDAVTFLAVLKACARLGDLSQGRSIHAWIVESGLKGKSVLANLLLHIYGSCGCVASAMLL 185

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+++ ER+L +WN  + A  +       L ++ +M+ EGV P  ++    +  C+    +
Sbjct: 186 FEKM-ERDLVSWNAAIAANAQSGDLGIALELFQRMQLEGVRPARITLVIALTVCAT---I 241

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            + + +H  +++   ++  + V+ AL   Y+  G L +AK+ FD     DV+SWN+++  
Sbjct: 242 RQAQAIH-FIVRESGLEQTLVVSTALASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGA 300

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           YA +  + +A  LF RM      PS    V  +N ++   ++ FG+ IHG   + G D  
Sbjct: 301 YAQHGHMSEAALLFARMLHEGISPSK---VTLVNASTGCSSLRFGRMIHGCALEKGLDRD 357

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            V + +AL DMY +C   E +  +F+  P  ++   N+++      G +K AVE+F  M 
Sbjct: 358 IV-LGNALLDMYTRCGSPEEARHLFKRIPCNAVS-WNTMIAGSSQKGQMKRAVELFQRMQ 415

Query: 408 DEGIGLDEVTLSTTLKALSVS--ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
            EG+     T    L+A++ +   +  +   R LH   +  G+ S  A+  +++  Y+ C
Sbjct: 416 LEGMAPVRATYLNLLEAVASNPEEARAMAEGRKLHSRIVSCGYASEPAIGTAVVKMYASC 475

Query: 466 GHIELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           G I+ +   F++       +VV + +I++  S++G G+ AL     M   G+ P+++T +
Sbjct: 476 GAIDEAAASFQRGAMEDRHDVVSWNAIISSLSQHGHGKRALGFFRRMDLHGVAPNQITCV 535

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  C  +  + EG++V + ++   G++++    + +  M GR G L+ A E+ ++   
Sbjct: 536 AVLDACAGAAALTEGEIVHDHLRH-SGMESNLFVATALASMYGRCGSLESAREIFEKVAV 594

Query: 583 GGDCMMWSSLL 593
             D +++++++
Sbjct: 595 ERDVVIFNAMI 605



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 252/492 (51%), Gaps = 21/492 (4%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +L    +    ++G +IH R++SLG  L   +G+ L+ LY++        ++F  L  R+
Sbjct: 35  LLRAAGDDRLLSQGRRIHARIVSLG--LEEELGNHLLRLYLKCESLGDVEEVFSRLEVRD 92

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
            A+W  ++ A+ E  +    + M+++M+ EGV  + ++F  +++ C+    L +G+ +H+
Sbjct: 93  EASWTTIITAYTEHGQAKRAIGMFHRMQQEGVRCDAVTFLAVLKACARLGDLSQGRSIHA 152

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            +++ G    ++  AN L+  Y +CG +  A   F+ +   D++SWN+ ++  A    + 
Sbjct: 153 WIVESGLKGKSVL-ANLLLHIYGSCGCVASAMLLFEKME-RDLVSWNAAIAANAQSGDLG 210

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
            ALELF RMQL   RP+  + V  L   +    +   + IH  V + G +   V V +AL
Sbjct: 211 IALELFQRMQLEGVRPARITLVIALTVCA---TIRQAQAIHFIVRESGLEQTLV-VSTAL 266

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
              Y +   +  +  VF+ A  R +   N+++ +    G++ +A  +F  M+ EGI   +
Sbjct: 267 ASAYARLGHLYQAKEVFDRAAERDVVSWNAMLGAYAQHGHMSEAALLFARMLHEGISPSK 326

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VTL   + A +  +S   G  R++H CA++ G + +I +  +L+D Y+RCG  E +  +F
Sbjct: 327 VTL---VNASTGCSSLRFG--RMIHGCALEKGLDRDIVLGNALLDMYTRCGSPEEARHLF 381

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC----NHS 531
           ++IP  N V + +++ G S+ G  + A+++ + M   G+ P + T+L +L         +
Sbjct: 382 KRIPC-NAVSWNTMIAGSSQKGQMKRAVELFQRMQLEGMAPVRATYLNLLEAVASNPEEA 440

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ--TPGGGDCMMW 589
             + EG+ + + + S  G  ++    + ++ M    G +D+A    Q+       D + W
Sbjct: 441 RAMAEGRKLHSRIVSC-GYASEPAIGTAVVKMYASCGAIDEAAASFQRGAMEDRHDVVSW 499

Query: 590 SSLLRSCRVHGN 601
           ++++ S   HG+
Sbjct: 500 NAIISSLSQHGH 511


>gi|414869047|tpg|DAA47604.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 694

 Score =  294 bits (753), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 195/645 (30%), Positives = 328/645 (50%), Gaps = 17/645 (2%)

Query: 28  SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK 87
           ++LL      P P       N+ +  +  +G L +A+++FDE+P  D  ++N L++    
Sbjct: 16  ATLLKSGASSPTPW------NQLLTAYSATG-LAAARRVFDEIPHPDAASWNSLLAAHVA 68

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
               + A  L   M + G+  S     S L   + A     G Q+    +  G   N++ 
Sbjct: 69  AGAHRDAWRLLRAMHARGLAASTFALGSALRSAAAARRPELGAQLQSFSVRCGLADNVFP 128

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            S L+D+Y + G    A  +FD +P RN+ +WN ++  + +  +P E + ++ +M+  G 
Sbjct: 129 ASALLDVYAKCGRLGDARRVFDGMPVRNIVSWNAIIAGYTDSRKPAEAMELFLEMQRVGS 188

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P+G +F  ++   +        +QLH  ++K G   + +   NA +  YS C +L +++
Sbjct: 189 VPDGTTFAVLLATIAGPRWYSLMRQLHGKIVKYG-SALGLVALNAAITAYSQCDALADSR 247

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRT 326
           K FD I   D+ISWNS++  YA + L  +A+  F RM +    +P + SF   ++  S  
Sbjct: 248 KIFDGIESRDLISWNSMLGAYAYHGLDDEAMRFFVRMMRESGIQPDMYSFTSAISVCSEH 307

Query: 327 G-NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN---VIESSVAVFESAPGRSLEC 382
           G +   G+ IH  V K G + G   V +A+  MY +     ++E +   F S   +    
Sbjct: 308 GCDDQQGRSIHSLVIKFGLE-GVTPVCNAMIAMYTRFADNCMMEDAYNCFSSLVFKDAVS 366

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            NS++T   H G   DA++ F  M  E I  DE  LS  L++ S  A   LG  R +H  
Sbjct: 367 WNSMLTGYSHHGLSSDALKFFRCMRAENIRTDEFGLSAALRSCSDLAVLRLG--RQVHSL 424

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
            ++SGF SN  VS SL+  YS+CG +  + + FE+    + V + S+M GY+++G  +  
Sbjct: 425 VVQSGFASNDFVSSSLIFMYSKCGVLGDARKSFEEADKSSSVPWNSMMFGYAQHGQAQTV 484

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
            D+   M+   +  D VTF+ ++   +H G+V EG  + N+M++ Y I    +HY+C +D
Sbjct: 485 TDLFNEMLDLEVPLDHVTFVALITAYSHGGLVDEGSEILNTMETRYKIPMRMEHYACGVD 544

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622
           + GRAG LDKA+EL++  P   D ++W +LL +CR+HGN  +   VA  L   EP   + 
Sbjct: 545 LYGRAGQLDKAKELIESMPFQPDAIVWMTLLGACRIHGNMELASDVARHLFVAEPRQHST 604

Query: 623 YSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           Y  +S+ YS +G +     +++    R L++  G S IEV N  H
Sbjct: 605 YVLLSSMYSGLGMWSDRATVQKVMRNRALSKIPGWSWIEVKNEVH 649


>gi|15231402|ref|NP_188004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273848|sp|Q9LRV9.1|PP228_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g13880
 gi|9294611|dbj|BAB02912.1| probable selenium-binding protein [Arabidopsis thaliana]
 gi|332641909|gb|AEE75430.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 748

 Score =  294 bits (753), Expect = 9e-77,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 325/622 (52%), Gaps = 13/622 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K   L  A++LFD MP R+++++N LISG  +    +QA+ L+ E     +K    T+
Sbjct: 92  YCKCRELGFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTY 151

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +  L  C        G  +H  V+  G    +++ + L+D+Y + G   +A+ LFD   E
Sbjct: 152 AGALGFCGERCDLDLGELLHGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCDE 211

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM---LLDEG 230
           R+  +WN ++  +  +   +E L +  KM  +G+     +   +++ C I +    +++G
Sbjct: 212 RDQVSWNSLISGYVRVGAAEEPLNLLAKMHRDGLNLTTYALGSVLKACCINLNEGFIEKG 271

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +H +  KLG ++ +I V  AL+D Y+  GSL EA K F  +P  +V+++N+++S +  
Sbjct: 272 MAIHCYTAKLG-MEFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQ 330

Query: 291 YDLIFD-----ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
            D I D     A +LF  MQ     PS  +F   L   S    + +G+QIH  + K  F 
Sbjct: 331 MDEITDEASSEAFKLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQ 390

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
                + SAL ++Y      E  +  F S   + +    S++   + +  ++ A ++F  
Sbjct: 391 SDEF-IGSALIELYALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQ 449

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           +    I  +E T+S  + A +  A+  L S   +   AIKSG ++  +V  S +  Y++ 
Sbjct: 450 LFSSHIRPEEYTVSLMMSACADFAA--LSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKS 507

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G++ L++QVF ++ +P+V  ++++++  +++G   EAL++ E M   G+ P++  FL VL
Sbjct: 508 GNMPLANQVFIEVQNPDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVL 567

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             C H G+V +G   F  MK+ Y I+ + +H++C++D+LGR G L  AE L+  +     
Sbjct: 568 IACCHGGLVTQGLKYFQCMKNDYRINPNEKHFTCLVDLLGRTGRLSDAENLILSSGFQDH 627

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
            + W +LL SCRV+ + +IG+RVA  LMELEP     Y  + N Y++ G    + ++RE 
Sbjct: 628 PVTWRALLSSCRVYKDSVIGKRVAERLMELEPEASGSYVLLHNIYNDSGVNSSAEEVREL 687

Query: 646 ALARKLTRDIGHSLIEV-NSCH 666
              R + ++   S I + N  H
Sbjct: 688 MRDRGVKKEPALSWIVIGNQTH 709



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 75/285 (26%), Positives = 142/285 (49%), Gaps = 6/285 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF-----RHPKQAL 95
           + +I      +D + K+G L  A KLF  MP++++VTYN +ISG  +          +A 
Sbjct: 284 EFDIVVRTALLDMYAKNGSLKEAIKLFSLMPSKNVVTYNAMISGFLQMDEITDEASSEAF 343

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            L+ +M   G++ S STFS VL  CS A     G QIH  +    F  + +IGS L++LY
Sbjct: 344 KLFMDMQRRGLEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELY 403

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
             MG +   +  F    ++++A+W  M+    +  + +    ++ ++ +  + P   +  
Sbjct: 404 ALMGSTEDGMQCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVS 463

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            M+  C+    L  G+Q+  + IK G +D    V  + +  Y+  G++  A + F  +  
Sbjct: 464 LMMSACADFAALSSGEQIQGYAIKSG-IDAFTSVKTSSISMYAKSGNMPLANQVFIEVQN 522

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
            DV ++++++S  A +    +AL +F  M+    +P+ ++F+  L
Sbjct: 523 PDVATYSAMISSLAQHGSANEALNIFESMKTHGIKPNQQAFLGVL 567



 Score = 65.9 bits (159), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 59/292 (20%), Positives = 125/292 (42%), Gaps = 9/292 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L P   T + +   C++   L     + +  C+ N Q + +  +  I+ +   G      
Sbjct: 354 LEPSPSTFSVVLKACSAAKTLEYGRQIHALICKNNFQSDEFIGSALIELYALMGSTEDGM 413

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           + F     +D+ ++  +I    +    + A  L+ ++ S  I+    T S ++S C++  
Sbjct: 414 QCFASTSKQDIASWTSMIDCHVQNEQLESAFDLFRQLFSSHIRPEEYTVSLMMSACADFA 473

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
             + G QI    +  G      + +  + +Y + G    A  +F E+   ++AT++ M+ 
Sbjct: 474 ALSSGEQIQGYAIKSGIDAFTSVKTSSISMYAKSGNMPLANQVFIEVQNPDVATYSAMIS 533

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           +  +    +E L ++  MK  G++PN  +F  ++  C  G L+ +G +    +     ++
Sbjct: 534 SLAQHGSANEALNIFESMKTHGIKPNQQAFLGVLIACCHGGLVTQGLKYFQCMKNDYRIN 593

Query: 245 VNIFVANALVDFYSACGSLIEAKK---SFDFIPVDDVISWNSIVS---IYAD 290
            N      LVD     G L +A+    S  F   D  ++W +++S   +Y D
Sbjct: 594 PNEKHFTCLVDLLGRTGRLSDAENLILSSGF--QDHPVTWRALLSSCRVYKD 643



 Score = 59.7 bits (143), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 46/185 (24%), Positives = 89/185 (48%), Gaps = 4/185 (2%)

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           +   LD        +  + S S  LG  +L H   IKS     + +  +L++ Y +C  +
Sbjct: 41  KNTALDSEGYKILFQTAAKSGSVVLG--KLAHGHMIKSSLNPCLYLLNNLLNMYCKCREL 98

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
             + Q+F+++P  N++ F S+++GY++ G   +A+++     +  L  DK T+   L  C
Sbjct: 99  GFARQLFDRMPERNIISFNSLISGYTQMGFYEQAMELFLEAREANLKLDKFTYAGALGFC 158

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
                +  G+L+ + +  V G+       + +IDM  + G LD+A  L  +     D + 
Sbjct: 159 GERCDLDLGELL-HGLVVVNGLSQQVFLINVLIDMYSKCGKLDQAMSLFDRCD-ERDQVS 216

Query: 589 WSSLL 593
           W+SL+
Sbjct: 217 WNSLI 221


>gi|449465795|ref|XP_004150613.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Cucumis sativus]
          Length = 603

 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 182/558 (32%), Positives = 313/558 (56%), Gaps = 18/558 (3%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF-DELPE 173
           + L  C++     +G Q+H  +++ GF  +    + L+++Y + G    A+ +F D   E
Sbjct: 16  AFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITSLINMYSKCGQMGEAILVFYDPCHE 75

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           RN+  +N ++  F       +  + Y KM+ EGV P+  +F  +VR C   M   E K++
Sbjct: 76  RNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEVM---EVKKI 132

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  ++K+G +++++FV +ALV+ Y   GS+ +A+K F  + + DV+ WN++++ YA    
Sbjct: 133 HGCLLKMG-LELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGC 191

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLN-FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           + +ALE+F RM +    PS  +    L+ FASR G++  GK +HG V K+G+D G V V 
Sbjct: 192 LDEALEVFRRMHVKGVAPSRFTITGILSVFASR-GDLDNGKTVHGIVMKMGYDSG-VSVS 249

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL DMYGKC  I  ++ +FE    + +   NS+++     G+    + +F  M+  GI 
Sbjct: 250 NALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISVHEQCGDHDGTLRLFDKMLGSGIL 309

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAI--------KSGFESNIAVSCSLMDAYSR 464
            D VT++T L A S  A+   G  R +H   I        ++G   N+ VS ++MD Y++
Sbjct: 310 PDLVTITTVLPACSHLAALMHG--REIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAK 367

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG +  + ++F+ +   +V  +  ++ GY  +G   EAL M   M +    P++VT + V
Sbjct: 368 CGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGV 427

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+ CNH+G V  G+L    M+S +G+    +HY+C+IDMLGRAG L+ A E++Q+ P   
Sbjct: 428 LSACNHAGFVSHGRLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQA 487

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           + ++W +LL +CR+HGN  +    A  +++LEP     Y  +SN Y  IG +E  +++R+
Sbjct: 488 NPVVWRALLGACRLHGNAELAEIAARQVLQLEPEHCGSYVLMSNVYGVIGRYEEVLEVRK 547

Query: 645 TALARKLTRDIGHSLIEV 662
           T   + + +  G S IE+
Sbjct: 548 TMKEQNVKKTPGCSWIEL 565



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 132/483 (27%), Positives = 231/483 (47%), Gaps = 28/483 (5%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF-DEMPARDMVTYNLLISGCGK 87
           SL++     P+P     S    I+ + K G +  A  +F D    R++  YN +ISG   
Sbjct: 35  SLMITYGFSPSPP----SITSLINMYSKCGQMGEAILVFYDPCHERNVFAYNAIISGFVS 90

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
                +    Y +M   G+     TF  V+  C       E  +IH  +L +G  L++++
Sbjct: 91  NGLASKGFQFYKKMRLEGVMPDKYTFPCVVRTCCEV---MEVKKIHGCLLKMGLELDVFV 147

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
           GS LV+ Y++ G    A  +F EL  R++  WN M+  + ++   DE L ++ +M  +GV
Sbjct: 148 GSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGV 207

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P+  +   ++   +    LD GK +H  V+K+G+ D  + V+NAL+D Y  C  + +A 
Sbjct: 208 APSRFTITGILSVFASRGDLDNGKTVHGIVMKMGY-DSGVSVSNALIDMYGKCKHIGDAL 266

Query: 268 KSFDFIPVDDVISWNSIVSIY---ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
             F+ I   D+ SWNSI+S++    D+D     L LF +M      P + +    L   S
Sbjct: 267 IIFEMINEKDIFSWNSIISVHEQCGDHD---GTLRLFDKMLGSGILPDLVTITTVLPACS 323

Query: 325 RTGNVYFGKQIHGY--VTKLGFD--HGSVH---VQSALTDMYGKCNVIESSVAVFESAPG 377
               +  G++IHGY  +  LG D  +G+V    V +A+ DMY KC  + +++ +F+S   
Sbjct: 324 HLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVMDMYAKCGSMNNALKIFDSMSK 383

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           + +   N ++      G   +A+ MF  M +     +EVTL   L A + +   + G   
Sbjct: 384 KDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGR-- 441

Query: 438 LLHCCAIKSGFE--SNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYS 494
            L    ++S F     I     ++D   R GH+E ++++ +K+P   N V + +++    
Sbjct: 442 -LFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQKMPIQANPVVWRALLGACR 500

Query: 495 RNG 497
            +G
Sbjct: 501 LHG 503



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 92/382 (24%), Positives = 193/382 (50%), Gaps = 17/382 (4%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           ++P   T   +  TC  ++ +    +     +   +L+++  +  ++ ++K+G +  A+K
Sbjct: 109 VMPDKYTFPCVVRTCCEVMEVKK--IHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQK 166

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           +F E+  RD+V +N +I+G  K     +AL ++  M   G+  S  T + +LSV ++ G 
Sbjct: 167 VFGELSIRDVVLWNAMINGYAKIGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGD 226

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
              G  +H  V+ +G+   + + + L+D+Y +      AL +F+ + E+++ +WN ++  
Sbjct: 227 LDNGKTVHGIVMKMGYDSGVSVSNALIDMYGKCKHIGDALIIFEMINEKDIFSWNSIISV 286

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI------- 238
             +    D  LR+++KM   G+ P+ ++   ++  CS    L  G+++H ++I       
Sbjct: 287 HEQCGDHDGTLRLFDKMLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKD 346

Query: 239 -KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            + G VD N+ V+NA++D Y+ CGS+  A K FD +   DV SWN ++  Y  +    +A
Sbjct: 347 DENGAVD-NLLVSNAVMDMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEA 405

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSA 354
           L +F +M     +P+  + V  L+  +  G V  G+    ++ ++    G   ++   + 
Sbjct: 406 LGMFSQMCEAEFKPNEVTLVGVLSACNHAGFVSHGRL---FLAQMESTFGVIPTIEHYTC 462

Query: 355 LTDMYGKCNVIESSVAVFESAP 376
           + DM G+   +E +  + +  P
Sbjct: 463 VIDMLGRAGHLEDAYEIVQKMP 484



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 66/278 (23%), Positives = 131/278 (47%), Gaps = 9/278 (3%)

Query: 317 VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESA 375
           V FL   +   N+  GKQ+H  +   GF      + S L +MY KC  +  ++ VF +  
Sbjct: 15  VAFLQSCADHQNLNKGKQLHSLMITYGFSPSPPSITS-LINMYSKCGQMGEAILVFYDPC 73

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
             R++   N++++  + +G      + +  M  EG+  D+ T         V     +  
Sbjct: 74  HERNVFAYNAIISGFVSNGLASKGFQFYKKMRLEGVMPDKYTFPCV-----VRTCCEVME 128

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + +H C +K G E ++ V  +L++ Y + G +E + +VF ++   +VV + +++NGY++
Sbjct: 129 VKKIHGCLLKMGLELDVFVGSALVNTYLKNGSMEDAQKVFGELSIRDVVLWNAMINGYAK 188

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
            G   EAL++   M  +G+ P + T   +L+     G +  G+ V   +  + G D+   
Sbjct: 189 IGCLDEALEVFRRMHVKGVAPSRFTITGILSVFASRGDLDNGKTVHGIVMKM-GYDSGVS 247

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             + +IDM G+   +  A  + +      D   W+S++
Sbjct: 248 VSNALIDMYGKCKHIGDALIIFEMI-NEKDIFSWNSII 284



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/207 (28%), Positives = 101/207 (48%), Gaps = 14/207 (6%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPN---------PQLNIYSSNRTI 51
           ML + +LP + TITT+ P C+ +  L     +  Y   N            N+  SN  +
Sbjct: 303 MLGSGILPDLVTITTVLPACSHLAALMHGREIHGYMIINGLGKDDENGAVDNLLVSNAVM 362

Query: 52  DDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           D + K G +N+A K+FD M  +D+ ++N++I G G   +  +AL ++ +M     K +  
Sbjct: 363 DMYAKCGSMNNALKIFDSMSKKDVASWNIMIMGYGMHGYALEALGMFSQMCEAEFKPNEV 422

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFD 169
           T   VLS C++AGF + G ++    +   FG+   I   + ++D+  R G    A ++  
Sbjct: 423 TLVGVLSACNHAGFVSHG-RLFLAQMESTFGVIPTIEHYTCVIDMLGRAGHLEDAYEIVQ 481

Query: 170 ELP-ERNLATWNLMLRAFCELSRPDEV 195
           ++P + N   W  +L A C L    E+
Sbjct: 482 KMPIQANPVVWRALLGA-CRLHGNAEL 507


>gi|356567222|ref|XP_003551820.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g39620-like [Glycine max]
          Length = 887

 Score =  294 bits (753), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 183/655 (27%), Positives = 332/655 (50%), Gaps = 8/655 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P   +I  LAP  + +  + S   +  Y        + S N  ID + K G +  A ++F
Sbjct: 227 PDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGVVS-NSLIDMYSKCGEVKLAHQIF 285

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK-ESASTFSSVLSVCSNAGFY 126
           D+M  +D +++  +++G        + L L DEM    IK    S  +SVL+        
Sbjct: 286 DQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDL- 344

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            +G ++H   L LG   ++ + +P+V +Y + G   +A + F  L  R+L  W+  L A 
Sbjct: 345 EKGKEVHNYALQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSAL 404

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +   P E L ++ +M+ EG++P+      +V  C+       GK +H +VIK   +  +
Sbjct: 405 VQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKAD-MGSD 463

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           I VA  LV  Y+ C S + A   F+ +   DV++WN++++ +        ALE+F R+QL
Sbjct: 464 ISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQL 523

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +P   + V  L+  +   ++Y G   HG + K G +   +HV+ AL DMY KC  + 
Sbjct: 524 SGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKNGIE-SEMHVKVALIDMYAKCGSLC 582

Query: 367 SSVAVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           ++  +F        E   N ++   LH+G   +A+  F  M  E +  + VT  T L A 
Sbjct: 583 TAENLFHLNKHVKDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPA- 641

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
            VS  + L      H C I+ GF S+  +  SL+D Y++ G +  S + F ++ +   + 
Sbjct: 642 -VSYLSILREAMAFHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGTIS 700

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + ++++GY+ +G G  AL +  +M +  +  D V+++ VL+ C H+G+++EG+ +F SM 
Sbjct: 701 WNAMLSGYAMHGQGEVALALFSLMQETHVPVDSVSYISVLSACRHAGLIQEGRNIFQSMT 760

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             + ++   +HY+CM+D+LG AG+ D+   L+ + P   D  +W +LL +C++H N  +G
Sbjct: 761 EKHNLEPSMEHYACMVDLLGCAGLFDEVLCLIDKMPTEPDAQVWGALLGACKMHSNVKLG 820

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
               + L++LEP +   Y  +S+ Y++ G +  + + R       L ++ G+S +
Sbjct: 821 EIALHHLLKLEPRNAVHYIVLSDIYAQCGRWIDARRTRSNMTDHGLKKNPGYSWV 875



 Score =  236 bits (602), Expect = 3e-59,   Method: Compositional matrix adjust.
 Identities = 149/525 (28%), Positives = 276/525 (52%), Gaps = 18/525 (3%)

Query: 75  MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHC 134
           ++ +N LI    +    ++A+  Y  M   G++    TF+ VL  C+ A  + EG+ IH 
Sbjct: 92  LILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLKACTGALDFHEGVAIHQ 151

Query: 135 RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
            + S     +++IG+ LVD+Y +MG    A  +FD++P +++A+WN M+    + S P E
Sbjct: 152 DIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDVASWNAMISGLSQSSNPCE 211

Query: 195 VLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
            L ++ +M+  EGVEP+ +S   +    S    +D  K +H +V++     V   V+N+L
Sbjct: 212 ALEIFQRMQMEEGVEPDSVSILNLAPAVSRLEDVDSCKSIHGYVVRRCVFGV---VSNSL 268

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +D YS CG +  A + FD + V D ISW ++++ Y  +   F+ L+L   M+    + + 
Sbjct: 269 IDMYSKCGEVKLAHQIFDQMWVKDDISWATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNK 328

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            S V  +  A+ T ++  GK++H Y  +LG     V V + +  MY KC  ++ +   F 
Sbjct: 329 ISVVNSVLAATETRDLEKGKEVHNYALQLGMTSDIV-VATPIVSMYAKCGELKKAKEFFL 387

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
           S  GR L   ++ +++L+ +G   +A+ +F  M  EG+  D+  LS+ + A +  +S+ L
Sbjct: 388 SLEGRDLVVWSAFLSALVQAGYPGEALSIFQEMQHEGLKPDKTILSSLVSACAEISSSRL 447

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G  +++HC  IK+   S+I+V+ +L+  Y+RC     +  +F ++   +VV + +++NG+
Sbjct: 448 G--KMMHCYVIKADMGSDISVATTLVSMYTRCKSFMYAMTLFNRMHYKDVVAWNTLINGF 505

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-----HSGMVKEGQLVFNSMKSVY 548
           ++ G  R AL+M   +   G+ PD  T + +L+ C      + G+   G ++ N      
Sbjct: 506 TKCGDPRLALEMFLRLQLSGVQPDSGTMVSLLSACALLDDLYLGICFHGNIIKN------ 559

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           GI+++      +IDM  + G L  AE L        D + W+ ++
Sbjct: 560 GIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHVKDEVSWNVMI 604



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 152/627 (24%), Positives = 299/627 (47%), Gaps = 16/627 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLL-DSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L P   T T +   CT  +     + +         + +++     +D + K GHL++A+
Sbjct: 123 LEPDKYTFTFVLKACTGALDFHEGVAIHQDIASRELECDVFIGTGLVDMYCKMGHLDNAR 182

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFSSVLSVCSNA 123
           K+FD+MP +D+ ++N +ISG  +  +P +AL ++  M +  G++  + +  ++    S  
Sbjct: 183 KVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRL 242

Query: 124 GFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                   IH  V+    FG+   + + L+D+Y + G    A  +FD++  ++  +W  M
Sbjct: 243 EDVDSCKSIHGYVVRRCVFGV---VSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISWATM 299

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  +       EVL++ ++MK + ++ N +S    V   +    L++GK++H++ ++LG 
Sbjct: 300 MAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSVLAATETRDLEKGKEVHNYALQLG- 358

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           +  +I VA  +V  Y+ CG L +AK+ F  +   D++ W++ +S         +AL +F 
Sbjct: 359 MTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEALSIFQ 418

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS-VHVQSALTDMYGK 361
            MQ    +P        ++  +   +   GK +H YV K   D GS + V + L  MY +
Sbjct: 419 EMQHEGLKPDKTILSSLVSACAEISSSRLGKMMHCYVIKA--DMGSDISVATTLVSMYTR 476

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C     ++ +F     + +   N+L+      G+ + A+EMF  +   G+  D  T+ + 
Sbjct: 477 CKSFMYAMTLFNRMHYKDVVAWNTLINGFTKCGDPRLALEMFLRLQLSGVQPDSGTMVSL 536

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE-KIPS 480
           L A ++     LG C   H   IK+G ES + V  +L+D Y++CG +  +  +F      
Sbjct: 537 LSACALLDDLYLGIC--FHGNIIKNGIESEMHVKVALIDMYAKCGSLCTAENLFHLNKHV 594

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            + V +  ++ GY  NG   EA+     M    + P+ VTF+ +L   ++  +++E  + 
Sbjct: 595 KDEVSWNVMIAGYLHNGCANEAISTFNQMKLESVRPNLVTFVTILPAVSYLSILREA-MA 653

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F++     G  +     + +IDM  ++G L  +E+   +    G  + W+++L    +HG
Sbjct: 654 FHACIIRMGFISSTLIGNSLIDMYAKSGQLSYSEKCFHEMENKGT-ISWNAMLSGYAMHG 712

Query: 601 NEIIGRRVANILMELE-PVDFAVYSQV 626
              +   + +++ E   PVD   Y  V
Sbjct: 713 QGEVALALFSLMQETHVPVDSVSYISV 739



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 102/410 (24%), Positives = 202/410 (49%), Gaps = 21/410 (5%)

Query: 149 SPLVDLYMRMGPSVRALDLF-DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
           +PL+ ++ R+   V+   L  + +   +L  WN ++RA+  L    E ++ Y  M   G+
Sbjct: 66  NPLLQIHARL--IVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGL 123

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
           EP+  +F ++++ C+  +   EG  +H  +     ++ ++F+   LVD Y   G L  A+
Sbjct: 124 EPDKYTFTFVLKACTGALDFHEGVAIHQDIASRE-LECDVFIGTGLVDMYCKMGHLDNAR 182

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRT 326
           K FD +P  DV SWN+++S  +      +ALE+F RMQ+     P   S +      SR 
Sbjct: 183 KVFDKMPGKDVASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSILNLAPAVSRL 242

Query: 327 GNVYFGKQIHGYVTK---LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
            +V   K IHGYV +    G       V ++L DMY KC  ++ +  +F+    +     
Sbjct: 243 EDVDSCKSIHGYVVRRCVFGV------VSNSLIDMYSKCGEVKLAHQIFDQMWVKDDISW 296

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
            ++M   +H G   + +++   M  + I ++++++  ++  L+ + + +L   + +H  A
Sbjct: 297 ATMMAGYVHHGCYFEVLQLLDEMKRKHIKMNKISVVNSV--LAATETRDLEKGKEVHNYA 354

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           ++ G  S+I V+  ++  Y++CG ++ + + F  +   ++V +++ ++   + G   EAL
Sbjct: 355 LQLGMTSDIVVATPIVSMYAKCGELKKAKEFFLSLEGRDLVVWSAFLSALVQAGYPGEAL 414

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
            + + M   GL PDK     +++ C      + G+     M   Y I AD
Sbjct: 415 SIFQEMQHEGLKPDKTILSSLVSACAEISSSRLGK-----MMHCYVIKAD 459



 Score = 60.1 bits (144), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 56/242 (23%), Positives = 116/242 (47%), Gaps = 15/242 (6%)

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           +++       S    SL   NSL+ +       ++A++ +  M   G+  D+ T +  LK
Sbjct: 76  IVQQCTLAPNSITNPSLILWNSLIRAYSRLHLFQEAIKSYQTMSYMGLEPDKYTFTFVLK 135

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A + +   + G    +H        E ++ +   L+D Y + GH++ + +VF+K+P  +V
Sbjct: 136 ACTGALDFHEGVA--IHQDIASRELECDVFIGTGLVDMYCKMGHLDNARKVFDKMPGKDV 193

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVM-IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
             + ++++G S++    EAL++ + M ++ G+ PD V+ L      N +  V   + V +
Sbjct: 194 ASWNAMISGLSQSSNPCEALEIFQRMQMEEGVEPDSVSIL------NLAPAVSRLEDV-D 246

Query: 543 SMKSVYGIDADRQHY----SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           S KS++G    R  +    + +IDM  + G +  A ++  Q     D + W++++     
Sbjct: 247 SCKSIHGYVVRRCVFGVVSNSLIDMYSKCGEVKLAHQIFDQMWVKDD-ISWATMMAGYVH 305

Query: 599 HG 600
           HG
Sbjct: 306 HG 307


>gi|357130605|ref|XP_003566938.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 670

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 167/606 (27%), Positives = 321/606 (52%), Gaps = 13/606 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+K+FD M     + +N +I G      P  AL L+  M   G+     T ++V    S+
Sbjct: 72  ARKVFDRMAQPTAIVWNCMIRGYNSCHAPMDALELFRAMRRSGVSPDNYTMAAVAQ--SS 129

Query: 123 AGFYT-----EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           A F +      G  +H  V  +GF  +L++ S L++ Y        A  +F+E+ ER++ 
Sbjct: 130 AAFASWKGRATGDAVHALVQRIGFASDLFVMSGLINFYGASKSVEDARKVFEEMHERDVV 189

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W LM+ AF +  + D VLR  ++M++EG +PN ++   ++  C     +D+G  +++ V
Sbjct: 190 SWTLMISAFAQCGQWDNVLRSLDEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARV 249

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            + G ++ ++ + NAL+  Y  CG + +A K+F  +P+ +  SWN+++  +       +A
Sbjct: 250 DEYG-IEADVDIRNALIGMYVKCGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEA 308

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L +F  M      P + + V  L+  ++ G++  G+ +H Y+      H  + +Q++L +
Sbjct: 309 LTMFEEMLSDGVIPDVITLVSVLSTYAQLGDLQQGRYLHNYIKDHEI-HCDIILQNSLIN 367

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  + ++  +FE+   R +    +++   +     + A  +F  M    +   E+ 
Sbjct: 368 MYAKCGDMAAAEIIFENMARRDIVSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMA 427

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           L + L A S   + + G  R +H    +    +++ +  +L+D Y++CG I+ + ++F +
Sbjct: 428 LVSLLSACSQLGALDKG--REIHSYIKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSR 485

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVLAGCNHSGMVKE 536
           +     + + +++ G +  G G+EA+ + E +++ R   PD +T   VL  C H GMV E
Sbjct: 486 MRHKQTLAWNAMIGGLASQGQGKEAVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDE 545

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G   FN M ++ GI  D +HY C++D+LGRAG+LD+A   +Q+ P   + ++W SLL +C
Sbjct: 546 GLHYFNLMLTL-GIVPDNEHYGCIVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLLAAC 604

Query: 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           RVH    +G+ +   +++L P D   +  +SN ++E G+++   Q+R    +R++ +  G
Sbjct: 605 RVHHRMELGKIIGQHIIDLAPNDVGAHVLISNLHAEEGQWDDVEQVRGMMGSRRVEKSPG 664

Query: 657 HSLIEV 662
           HS I+V
Sbjct: 665 HSSIQV 670



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/466 (25%), Positives = 223/466 (47%), Gaps = 45/466 (9%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLY 98
           +N Y ++++++D         A+K+F+EM  RD+V++ L+IS    CG++ +  ++L   
Sbjct: 164 INFYGASKSVED---------ARKVFEEMHERDVVSWTLMISAFAQCGQWDNVLRSL--- 211

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           DEM S G K +  T  S+LS C       +G+ ++ RV   G   ++ I + L+ +Y++ 
Sbjct: 212 DEMQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEYGIEADVDIRNALIGMYVKC 271

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A   F  +P RN  +WN ++  F +  +  E L M+ +M ++GV P+ ++   ++
Sbjct: 272 GCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSVL 331

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
              +    L +G+ LH++ IK   +  +I + N+L++ Y+ CG +  A+  F+ +   D+
Sbjct: 332 STYAQLGDLQQGRYLHNY-IKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDI 390

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW ++V  Y        A  LF  M++     S  + V  L+  S+ G +  G++IH Y
Sbjct: 391 VSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSY 450

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + +       + ++SAL DMY KC  I+++  +F     +     N+++  L   G  K+
Sbjct: 451 IKEKSV-RTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKE 509

Query: 399 AVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE-------- 449
           AV +F  ++       D +TL   L             C   H   +  G          
Sbjct: 510 AVALFEQLLKLRDPKPDAITLKVVL-------------CACTHVGMVDEGLHYFNLMLTL 556

Query: 450 ----SNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
                N    C ++D   R G ++ ++   +K+P  PN V + S++
Sbjct: 557 GIVPDNEHYGC-IVDLLGRAGLLDEAYNFIQKMPIQPNPVIWGSLL 601



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 88/381 (23%), Positives = 175/381 (45%), Gaps = 10/381 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLL----DSYCQPNPQLNIYSSNRTIDDFVK 56
           M S    P   TI +L   C  +  +   L +    D Y     + ++   N  I  +VK
Sbjct: 214 MQSEGTKPNKITIISLLSACGQVRAVDKGLWVYARVDEY---GIEADVDIRNALIGMYVK 270

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
            G ++ A K F  MP R+  ++N LI G  +    K+AL +++EM+S G+     T  SV
Sbjct: 271 CGCMSDAWKTFKGMPIRNTKSWNTLIDGFVQNGKHKEALTMFEEMLSDGVIPDVITLVSV 330

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           LS  +  G   +G  +H  +       ++ + + L+++Y + G    A  +F+ +  R++
Sbjct: 331 LSTYAQLGDLQQGRYLHNYIKDHEIHCDIILQNSLINMYAKCGDMAAAEIIFENMARRDI 390

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +W  M+  + +  +      +++ MK   V  + ++   ++  CS    LD+G+++HS+
Sbjct: 391 VSWTAMVCGYVKGLQFRTAFNLFDDMKVRDVMASEMALVSLLSACSQLGALDKGREIHSY 450

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
            IK   V  ++++ +ALVD Y+ CG +  A + F  +     ++WN+++   A      +
Sbjct: 451 -IKEKSVRTDMWLESALVDMYAKCGCIDAAAEIFSRMRHKQTLAWNAMIGGLASQGQGKE 509

Query: 297 ALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           A+ LF + ++L   +P   +    L   +  G V  G      +  LG    + H    +
Sbjct: 510 AVALFEQLLKLRDPKPDAITLKVVLCACTHVGMVDEGLHYFNLMLTLGIVPDNEHY-GCI 568

Query: 356 TDMYGKCNVIESSVAVFESAP 376
            D+ G+  +++ +    +  P
Sbjct: 569 VDLLGRAGLLDEAYNFIQKMP 589


>gi|449439011|ref|XP_004137281.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Cucumis sativus]
          Length = 787

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 179/578 (30%), Positives = 300/578 (51%), Gaps = 7/578 (1%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCS 121
           A+KLFD++    +  +N +I           AL ++D M+  G       TF  V+  CS
Sbjct: 136 ARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMICSGKCWPDKYTFPLVIKACS 195

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
                  G+ IH R L  GF  N+++ + L+ +YM  G    A  +F+ + +R++ +WN 
Sbjct: 196 VMSMLNVGVLIHGRALVSGFSSNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNT 255

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+  + +  RP+E L ++N M    VEP+  +    +  C     L+ G ++H  V K  
Sbjct: 256 MISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQK-N 314

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +   I V NALVD YS CG + EA   F      DVI+W S+++ Y        AL L 
Sbjct: 315 HLQEKIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALC 374

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             MQL    P+  +    L+  +    +  GK +H +V +   D   V V +AL DMY K
Sbjct: 375 PAMQLDGVVPNAVTLASLLSACASLCCLKQGKSLHAWVMRKKLD-SDVLVVTALIDMYAK 433

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           CN +  S  VF     +     N+L++ L+H+   ++AV +F  M+ E +  +  T ++ 
Sbjct: 434 CNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSV 493

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           + A ++ A  +L     LH   ++SGF S IAV   L+D YS+CG ++ +H++F++IP+ 
Sbjct: 494 IPAYAILA--DLKQVMNLHSYLVRSGFISKIAVITGLIDMYSKCGSLDYAHKIFDEIPNK 551

Query: 482 --NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +++ ++ ++ GY  +G G  A+ +   M+  G+ P+++TF  VL  C+H G+V +G  
Sbjct: 552 EKDIIVWSVLIAGYGMHGHGETAVLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLT 611

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +F  M   Y       HY+C++D+LGRAG LD+A +L++  P   +  +W +LL +C +H
Sbjct: 612 LFKYMIENYPSSPLPNHYTCVVDLLGRAGRLDEAYDLIKSMPFQQNHSIWGALLGACLIH 671

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            N  +G   A  L ELEP     Y  ++N Y+ +G ++
Sbjct: 672 QNVELGEVAAERLFELEPESTGNYILLANIYAAVGRWK 709



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/470 (24%), Positives = 221/470 (47%), Gaps = 29/470 (6%)

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           +++ S L   Y   G    A  LFD+L + +L  WN +++ + +     + LR+++ M  
Sbjct: 117 IHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAIIKMYVDKGFHFDALRVFDSMIC 176

Query: 205 EG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
            G   P+  +F  +++ CS+  +L+ G  +H   +  G+   N+FV N+L+  Y  CG +
Sbjct: 177 SGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVSGF-SSNMFVQNSLLAMYMNCGKV 235

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
             A++ F+ +    V+SWN+++S +       +AL +F  M   R  P   + V  L   
Sbjct: 236 GLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMMDARVEPDSATIVSALPSC 295

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
                +  G ++H  V K       + V++AL DMY +C  ++ +  VF     + +   
Sbjct: 296 GHLKELELGIKVHKLVQKNHLQE-KIEVRNALVDMYSRCGGMDEASLVFAETKEKDVITW 354

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
            S++   + +GN K A+ +   M  +G+  + VTL++ L A +       G  + LH   
Sbjct: 355 TSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACASLCCLKQG--KSLHAWV 412

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           ++   +S++ V  +L+D Y++C  +  S QVF K      V + ++++G   N + REA+
Sbjct: 413 MRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWNALLSGLIHNELAREAV 472

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCN-----------HSGMVKEGQLVFNSMKSVYGIDA 552
            + + M+   +  +  TF  V+               HS +V+ G   F S  +V     
Sbjct: 473 GLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRSG---FISKIAV----- 524

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGG-GDCMMWSSLLRSCRVHGN 601
                + +IDM  + G LD A ++  + P    D ++WS L+    +HG+
Sbjct: 525 ----ITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGH 570



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 189/386 (48%), Gaps = 4/386 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  N  +  ++  G +  A+++F+ M  R +V++N +ISG  +   P++AL +++ M+
Sbjct: 218 NMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAVFNSMM 277

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++  ++T  S L  C +      GI++H  V        + + + LVD+Y R G   
Sbjct: 278 DARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGGMD 337

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F E  E+++ TW  M+  +         L +   M+ +GV PN ++   ++  C+
Sbjct: 338 EASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSACA 397

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L +GK LH+ V++   +D ++ V  AL+D Y+ C ++  + + F    +   + WN
Sbjct: 398 SLCCLKQGKSLHAWVMRKK-LDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPWN 456

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S     +L  +A+ LF  M +     +  +F   +   +   ++     +H Y+ + 
Sbjct: 457 ALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVRS 516

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE--CCNSLMTSLLHSGNIKDAV 400
           GF    + V + L DMY KC  ++ +  +F+  P +  +    + L+      G+ + AV
Sbjct: 517 GFI-SKIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETAV 575

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALS 426
            +F  MV  G+  +E+T ++ L A S
Sbjct: 576 LLFNQMVHSGMQPNEITFTSVLHACS 601



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 110/424 (25%), Positives = 202/424 (47%), Gaps = 15/424 (3%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFV--ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           L++ K LH H I  G +    F+   + L   Y+ CG +  A+K FD +    +  WN+I
Sbjct: 95  LNKTKILHGHTITSGLLHSPNFIHLPSHLAVSYAFCGCVPLARKLFDDLSDPSLFLWNAI 154

Query: 285 VSIYADYDLIFDALELFFRMQLCRKR--PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           + +Y D    FDAL +F  M +C  +  P   +F   +   S    +  G  IHG     
Sbjct: 155 IKMYVDKGFHFDALRVFDSM-ICSGKCWPDKYTFPLVIKACSVMSMLNVGVLIHGRALVS 213

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF   ++ VQ++L  MY  C  +  +  VF     RS+   N++++    +G  ++A+ +
Sbjct: 214 GFS-SNMFVQNSLLAMYMNCGKVGLARQVFNVMLKRSVVSWNTMISGWFQNGRPEEALAV 272

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M+D  +  D  T+ + L +        LG    +H    K+  +  I V  +L+D Y
Sbjct: 273 FNSMMDARVEPDSATIVSALPSCGHLKELELGI--KVHKLVQKNHLQEKIEVRNALVDMY 330

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           SRCG ++ +  VF +    +V+ +TS++NGY  NG  + AL +   M   G++P+ VT  
Sbjct: 331 SRCGGMDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLA 390

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L+ C     +K+G+   ++      +D+D    + +IDM  +   +  + ++  +T  
Sbjct: 391 SLLSACASLCCLKQGK-SLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKT-S 448

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVA---NILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
               + W++LL S  +H NE+    V    ++L+E    + A ++ V   Y+ + + +  
Sbjct: 449 MKRTVPWNALL-SGLIH-NELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQV 506

Query: 640 MQIR 643
           M + 
Sbjct: 507 MNLH 510



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/405 (24%), Positives = 186/405 (45%), Gaps = 7/405 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M+  ++ P   TI +  P+C  +  L   + +    Q N  Q  I   N  +D + + G 
Sbjct: 276 MMDARVEPDSATIVSALPSCGHLKELELGIKVHKLVQKNHLQEKIEVRNALVDMYSRCGG 335

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A  +F E   +D++T+  +I+G     + K AL L   M   G+  +A T +S+LS 
Sbjct: 336 MDEASLVFAETKEKDVITWTSMINGYIMNGNAKSALALCPAMQLDGVVPNAVTLASLLSA 395

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++     +G  +H  V+      ++ + + L+D+Y +      +  +F +   +    W
Sbjct: 396 CASLCCLKQGKSLHAWVMRKKLDSDVLVVTALIDMYAKCNAVSYSFQVFAKTSMKRTVPW 455

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N +L          E + ++  M  E VE N  +F  ++   +I   L +   LHS++++
Sbjct: 456 NALLSGLIHNELAREAVGLFKSMLIEEVEANHATFNSVIPAYAILADLKQVMNLHSYLVR 515

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDVISWNSIVSIYADYDLIFDA 297
            G++   I V   L+D YS CGSL  A K FD IP    D+I W+ +++ Y  +     A
Sbjct: 516 SGFIS-KIAVITGLIDMYSKCGSLDYAHKIFDEIPNKEKDIIVWSVLIAGYGMHGHGETA 574

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           + LF +M     +P+  +F   L+  S  G V  G  +  Y+ +        +  + + D
Sbjct: 575 VLLFNQMVHSGMQPNEITFTSVLHACSHRGLVDDGLTLFKYMIENYPSSPLPNHYTCVVD 634

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           + G+   ++ +  + +S P    +  +S+  +LL +  I   VE+
Sbjct: 635 LLGRAGRLDEAYDLIKSMP---FQQNHSIWGALLGACLIHQNVEL 676


>gi|147865382|emb|CAN79811.1| hypothetical protein VITISV_018821 [Vitis vinifera]
          Length = 871

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 190/616 (30%), Positives = 311/616 (50%), Gaps = 53/616 (8%)

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +N LI         +  L LY  M   G +    TF  VL  C     +  G  +H  V 
Sbjct: 113 WNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHAVVF 172

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER---NLATWNLMLRAFCELSRPDE 194
           + GF  N+++G+ LV +Y R G    A  +FDE+ ER   +L +WN ++ A+ +      
Sbjct: 173 ASGFEWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIR 232

Query: 195 VLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
            ++M+ +M  + G+ P+ +S   ++  C+       GKQ+H + ++ G  + ++FV NA+
Sbjct: 233 AMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFE-DVFVGNAV 291

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNS------------------------------ 283
           VD Y+ CG + EA K F+ + V DV+SWN+                              
Sbjct: 292 VDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNV 351

Query: 284 -----IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
                +++ YA   L F+AL++F +M LC   P++ + V  L+  +  G +  GK+ H +
Sbjct: 352 VTWSAVIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCH 411

Query: 339 VTK--LGFDHGS----VHVQSALTDMYGKCNVIESSVAVFESAP--GRSLECCNSLMTSL 390
             K  L  D       + V +AL DMY KC   +++ A+F+  P   RS+     L+   
Sbjct: 412 AIKWILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGN 471

Query: 391 LHSGNIKDAVEMFGFMV--DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
              G   +A+E+F  M+  D  +  +  T+S  L A +   +   G  R +H   +++ F
Sbjct: 472 AQHGEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFG--RQIHAYVLRNRF 529

Query: 449 ESNIA-VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           ES +  V+  L+D YS+ G ++ +  VF+ +   N V +TS+M GY  +G G EAL +  
Sbjct: 530 ESAMLFVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFY 589

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M +  L+PD VTF+ VL  C+HSGMV +G   FN M   +G+    +HY+CM+D+L RA
Sbjct: 590 EMQKVXLVPDGVTFVVVLYACSHSGMVDQGINYFNGMNKDFGVVPGAEHYACMVDLLSRA 649

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G LD+A EL++  P      +W +LL +CRV+ N  +G   AN L+ELE  +   Y+ +S
Sbjct: 650 GRLDEAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQLLELESGNDGSYTLLS 709

Query: 628 NFYSEIGEFEVSMQIR 643
           N Y+    ++   +IR
Sbjct: 710 NIYANARCWKDVARIR 725



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/521 (24%), Positives = 240/521 (46%), Gaps = 58/521 (11%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYL 97
           + N++  N  +  + + G   +A+++FDEM  R   D+V++N +++   +     +A+ +
Sbjct: 177 EWNVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGGDSIRAMKM 236

Query: 98  YDEMVSH-GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           ++ M    GI+  A +  +VL  C++ G ++ G Q+H   L  G   ++++G+ +VD+Y 
Sbjct: 237 FERMTEDLGIRPDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYA 296

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE----------- 205
           + G    A  +F+ +  +++ +WN M+  + ++ R D+ L ++ K++ E           
Sbjct: 297 KCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSA 356

Query: 206 ------------------------GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
                                   G EPN ++   ++ GC+    L  GK+ H H IK  
Sbjct: 357 VIAGYAQRGLGFEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIK-- 414

Query: 242 WV---DVN-----IFVANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADY 291
           W+   D N     + V NAL+D YS C S   A+  FD IP  D  V++W  ++   A +
Sbjct: 415 WILNLDENDPGDDLMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQH 474

Query: 292 DLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
               +ALELF +M        P+  +    L   +R G + FG+QIH YV +  F+   +
Sbjct: 475 GEANEALELFSQMLQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAML 534

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V + L DMY K   ++++  VF++   R+     SLMT     G  ++A+++F  M   
Sbjct: 535 FVANCLIDMYSKSGDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKV 594

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  D VT    L A S S   + G     +      G          ++D  SR G ++
Sbjct: 595 XLVPDGVTFVVVLYACSHSGMVDQG-INYFNGMNKDFGVVPGAEHYACMVDLLSRAGRLD 653

Query: 470 LSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
            + ++   +P  P    + ++++    Y+   +G  A + L
Sbjct: 654 EAMELIRGMPMKPTPAVWVALLSACRVYANVELGEYAANQL 694



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 122/566 (21%), Positives = 243/566 (42%), Gaps = 86/566 (15%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P   ++  + P C S+   S    +  Y   +    +++  N  +D + K G +  A K+
Sbjct: 248 PDAVSLVNVLPACASVGAWSRGKQVHGYALRSGLFEDVFVGNAVVDMYAKCGMMEEANKV 307

Query: 67  FDEMPARDMVTYNLLISG---CGKF----------RHPK--------------------- 92
           F+ M  +D+V++N +++G    G+F          R  K                     
Sbjct: 308 FERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEKIELNVVTWSAVIAGYAQRGLG 367

Query: 93  -QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN------- 144
            +AL ++ +M+  G + +  T  S+LS C++AG    G + HC  +     L+       
Sbjct: 368 FEALDVFRQMLLCGSEPNVVTLVSLLSGCASAGTLLHGKETHCHAIKWILNLDENDPGDD 427

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLATWNLMLRAFCELSRPDEVLRMYNKM 202
           L + + L+D+Y +      A  +FD +P  +R++ TW +++    +    +E L ++++M
Sbjct: 428 LMVINALIDMYSKCKSPKAARAMFDLIPPKDRSVVTWTVLIGGNAQHGEANEALELFSQM 487

Query: 203 KAEG--VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
                 V PN  +    +  C+    L  G+Q+H++V++  +    +FVAN L+D YS  
Sbjct: 488 LQPDNFVMPNAFTISCALMACARLGALRFGRQIHAYVLRNRFESAMLFVANCLIDMYSKS 547

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
           G +  A+  FD +   + +SW S+++ Y  +    +AL++F+ MQ     P   +FV  L
Sbjct: 548 GDVDAARVVFDNMHQRNGVSWTSLMTGYGMHGRGEEALQIFYEMQKVXLVPDGVTFVVVL 607

Query: 321 NFASRTGNVYFG-KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
              S +G V  G    +G     G   G+ H  + + D+  +   ++ ++ +    P   
Sbjct: 608 YACSHSGMVDQGINYFNGMNKDFGVVPGAEHY-ACMVDLLSRAGRLDEAMELIRGMP--- 663

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           ++   ++  +LL +  +   VE+  +  ++ + L+               S N GS  LL
Sbjct: 664 MKPTPAVWVALLSACRVYANVELGEYAANQLLELE---------------SGNDGSYTLL 708

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV----CFTSIMNGYSR 495
                     SNI  +       +R  ++ + +   +K P  + V       +   G   
Sbjct: 709 ----------SNIYANARCWKDVARIRYL-MKNTGIKKRPGCSWVQGRKGTATFFAGDWS 757

Query: 496 NGMGREALDMLEVMIQR----GLIPD 517
           + M ++  D+L  ++QR    G +PD
Sbjct: 758 HPMSQQIYDLLRDLMQRIKALGYVPD 783



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 77/271 (28%), Positives = 137/271 (50%), Gaps = 7/271 (2%)

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V  WN ++        + D L+L+ RMQ    RP   +F   L       +   G  +H 
Sbjct: 110 VFWWNQLIRRSVHLGFLEDVLQLYRRMQRLGWRPDHYTFPFVLKACGEIPSFRCGASVHA 169

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS---LECCNSLMTSLLHSG 394
            V   GF+  +V V + L  MYG+C   E++  VF+    R    L   NS++ + +  G
Sbjct: 170 VVFASGFEW-NVFVGNGLVSMYGRCGAWENARQVFDEMRERGVGDLVSWNSIVAAYMQGG 228

Query: 395 NIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           +   A++MF  M ++ GI  D V+L   L A +   + + G  + +H  A++SG   ++ 
Sbjct: 229 DSIRAMKMFERMTEDLGIRPDAVSLVNVLPACASVGAWSRG--KQVHGYALRSGLFEDVF 286

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V  +++D Y++CG +E +++VFE++   +VV + +++ GYS+ G   +AL + E + +  
Sbjct: 287 VGNAVVDMYAKCGMMEEANKVFERMKVKDVVSWNAMVTGYSQIGRFDDALGLFEKIREEK 346

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           +  + VT+  V+AG    G+  E   VF  M
Sbjct: 347 IELNVVTWSAVIAGYAQRGLGFEALDVFRQM 377


>gi|357440579|ref|XP_003590567.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355479615|gb|AES60818.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 1212

 Score =  294 bits (752), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 176/623 (28%), Positives = 319/623 (51%), Gaps = 7/623 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDE--MPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++  N  I  + K G L  A+ LFD   M   D V++N +IS         +AL L+  M
Sbjct: 183 VFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRM 242

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G++ +  TF S L  C    F   G  IH  +L      ++Y+ + L+ +Y   G  
Sbjct: 243 QEVGVESNTYTFVSALQACEGPTFIKIGRGIHAVILKSNHFTDVYVSNALIAMYANCGQM 302

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F  +  ++  +WN +L    +     + +  +  M+  G +P+ +S   M+   
Sbjct: 303 EDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAAS 362

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                L  G ++H++ IK G +D N+ + N+L+D Y  C  +     +F+++P  D+ISW
Sbjct: 363 GRSANLLAGMEVHAYAIKHG-IDSNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISW 421

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +I++ YA  +   DAL L  ++QL +           L   S   +    K+IHGYV K
Sbjct: 422 TTIIAGYAQNECHLDALNLLRKVQLEKMDVDPMMIGSILLACSGLKSEKLIKEIHGYVLK 481

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G     + +Q+A+ ++YG+  +++ +  VFES   + +    S++T  +H+G   +A+E
Sbjct: 482 GGL--ADILIQNAIVNVYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALE 539

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  +++  I  D +TL + L A   +A ++L   + +H   I+ GF     ++ SL+D 
Sbjct: 540 LFNSLIETNIEPDLITLVSVLYA--AAALSSLKKGKEIHGFLIRKGFFLEGLIANSLVDM 597

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y+RCG +E +  +F  +   +++ +TS++N    +G G++A+D+   M    ++PD +TF
Sbjct: 598 YARCGTMENARNIFNYVKQRDLILWTSMINANGMHGCGKDAIDLFSKMTDENVLPDHITF 657

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L +L  C+HSG+V EG+  F  MK+ Y ++   +HY+C++D+L R+  L++A   ++  P
Sbjct: 658 LALLYACSHSGLVVEGKQHFEIMKNEYKLEPWPEHYACLVDLLARSNSLEEAYHFVRNMP 717

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
                 +W +LL +CR+H N  +G   A  L++L   +   Y  VSN ++  G +    +
Sbjct: 718 IEPSAEVWCALLGACRIHSNNDLGEVAAKKLLQLNTENSGNYVLVSNTFAADGRWNDVEE 777

Query: 642 IRETALARKLTRDIGHSLIEVNS 664
           +R      KL +  G S IEV +
Sbjct: 778 VRSIMKGNKLKKKPGCSWIEVEN 800



 Score =  211 bits (536), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 140/566 (24%), Positives = 275/566 (48%), Gaps = 21/566 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++   + +  + K G    A K+FD+M  R + T+N +I  C       +A+ LY EM 
Sbjct: 81  SVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFTWNAMIGACVSAGRYVEAIELYKEMR 140

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+   A TF  VL  C        G +IH   +  G+G  +++ + L+ +Y + G   
Sbjct: 141 VLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAVKCGYGGFVFVCNALIAMYAKCGDLG 200

Query: 163 RALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
            A  LFD   + + +  +WN ++ A        E L ++ +M+  GVE N  +F   ++ 
Sbjct: 201 GARVLFDSGLMEKDDPVSWNSIISAHVGEGESLEALSLFRRMQEVGVESNTYTFVSALQA 260

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C     +  G+ +H+ ++K      +++V+NAL+  Y+ CG + +A++ F  +   D +S
Sbjct: 261 CEGPTFIKIGRGIHAVILKSNHF-TDVYVSNALIAMYANCGQMEDAERVFKSMLFKDCVS 319

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+++S     D+  DA+  F  MQ   ++P   S +  +  + R+ N+  G ++H Y  
Sbjct: 320 WNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQVSVLNMIAASGRSANLLAGMEVHAYAI 379

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K G D  ++H+ ++L DMYGKC  ++   + FE  P + L    +++     +    DA+
Sbjct: 380 KHGID-SNMHIGNSLIDMYGKCCCVKYMGSAFEYMPEKDLISWTTIIAGYAQNECHLDAL 438

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +   +  E + +D + + + L A S   S  L   + +H   +K G  ++I +  ++++
Sbjct: 439 NLLRKVQLEKMDVDPMMIGSILLACSGLKSEKL--IKEIHGYVLKGGL-ADILIQNAIVN 495

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y     ++ +  VFE I S ++V +TS++     NG+  EAL++   +I+  + PD +T
Sbjct: 496 VYGELALVDYARHVFESINSKDIVSWTSMITCCVHNGLAIEALELFNSLIETNIEPDLIT 555

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY------SCMIDMLGRAGILDKAE 574
            + VL        +K+G       K ++G    +  +      + ++DM  R G ++ A 
Sbjct: 556 LVSVLYAAAALSSLKKG-------KEIHGFLIRKGFFLEGLIANSLVDMYARCGTMENAR 608

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHG 600
            +        D ++W+S++ +  +HG
Sbjct: 609 NIFNYVK-QRDLILWTSMINANGMHG 633



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 192/405 (47%), Gaps = 13/405 (3%)

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L +G+QLH+H +K      ++F+    V  Y  CGS  +A K FD +    + +
Sbjct: 56  CASHKALPQGQQLHAHFLKTQNYLDSVFLDTKFVHMYGKCGSFYDAVKVFDKMSERTIFT 115

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+++          +A+EL+  M++        +F   L           G +IHG   
Sbjct: 116 WNAMIGACVSAGRYVEAIELYKEMRVLGVSLDAFTFPCVLKACGAFKERRLGCEIHGVAV 175

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE--CCNSLMTSLLHSGNIKD 398
           K G+  G V V +AL  MY KC  +  +  +F+S      +    NS++++ +  G   +
Sbjct: 176 KCGYG-GFVFVCNALIAMYAKCGDLGGARVLFDSGLMEKDDPVSWNSIISAHVGEGESLE 234

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M + G+  +  T  + L+A        +G  R +H   +KS   +++ VS +L
Sbjct: 235 ALSLFRRMQEVGVESNTYTFVSALQACEGPTFIKIG--RGIHAVILKSNHFTDVYVSNAL 292

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y+ CG +E + +VF+ +   + V + ++++G  +N M  +A++  + M   G  PD+
Sbjct: 293 IAMYANCGQMEDAERVFKSMLFKDCVSWNTLLSGMVQNDMYSDAINHFQDMQDSGQKPDQ 352

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           V+ L ++A    S  +  G  V ++    +GID++    + +IDM G+   +       +
Sbjct: 353 VSVLNMIAASGRSANLLAGMEV-HAYAIKHGIDSNMHIGNSLIDMYGKCCCVKYMGSAFE 411

Query: 579 QTPGGGDCMMWSSLL-----RSCRVHGNEIIGRRVANILMELEPV 618
             P   D + W++++       C +    ++ R+V    M+++P+
Sbjct: 412 YMP-EKDLISWTTIIAGYAQNECHLDALNLL-RKVQLEKMDVDPM 454


>gi|302817750|ref|XP_002990550.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
 gi|300141718|gb|EFJ08427.1| hypothetical protein SELMODRAFT_327 [Selaginella moellendorffii]
          Length = 917

 Score =  293 bits (751), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 177/622 (28%), Positives = 317/622 (50%), Gaps = 10/622 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T  T+   C+S   L+   LL +   Q     ++   N  +  +   G +++A   
Sbjct: 304 PDKVTFITILNACSSPATLTFGELLYECILQCGYDTHLIVGNCIMTMYSSCGRIDNAAAF 363

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  M  RD +++N +ISG  +     +A++L+  M++ GI     TF   +S+       
Sbjct: 364 FSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTF---ISIIDGTARM 420

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            E   +   ++  G  L++++ S L++++ R G    A  LFD++ +R++  W  ++ ++
Sbjct: 421 QEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWTSIISSY 480

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +    D+ L     M+ EG+  N  +    +  C+    L EGK +HSH I+ G+   +
Sbjct: 481 VQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHSHAIERGFA-AS 539

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             V NAL++ Y+ CG L EA   F      +++SWN+I + Y   D   +AL+LF  MQL
Sbjct: 540 PAVGNALINMYAKCGCLEEADLVFHQCG-KNLVSWNTIAAAYVQRDKWREALQLFQEMQL 598

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +    SFV  LN  S       G +IH  + + G +   + V +AL +MY     ++
Sbjct: 599 EGLKADKVSFVTVLNGCSSASE---GSKIHNILLETGMESDHI-VSTALLNMYTASKSLD 654

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  +F     R +   N+++      G  ++A++MF  M  EG+  D+++  T L A S
Sbjct: 655 EASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVTVLNAFS 714

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            S+ ++L   RL+       G+E++  V  +++  + R G +  + + FE+I   +   +
Sbjct: 715 GSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRERDAASW 774

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
             I+  ++++G   +AL +   M Q    PD +T + VL+ C+H G+++EG   F SM  
Sbjct: 775 NVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEEGYYHFTSMGR 834

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            +GI   ++HY C++D+L RAG LD+AEELL++ P     ++W +LL +C+V G+E   +
Sbjct: 835 EFGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVLWMTLLSACKVQGDEKRAK 894

Query: 607 RVANILMELEPVDFAVYSQVSN 628
           RVA  +MEL+P   A Y  +S+
Sbjct: 895 RVAERVMELDPRRPAAYVVLSS 916



 Score =  210 bits (535), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 136/491 (27%), Positives = 255/491 (51%), Gaps = 10/491 (2%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TF ++L +C+      EG  +H RV +  F  +  + +  + +Y + G    A+ +F  L
Sbjct: 4   TFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVTVFQSL 63

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
              +  +WN +L AF    +  +  +++ +MK +G+ P+ ++F  ++ GC+    L  GK
Sbjct: 64  DHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCTATGDLSRGK 123

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            LH  V++ G ++ N+ V  +L+  Y  CG + +A++ FD + + DV+SW S++  Y  +
Sbjct: 124 LLHGFVLEAG-LERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQH 182

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           D   +ALELF RM+     P+  ++   ++  +   ++  GK IH  V + GF+   V V
Sbjct: 183 DRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFE-SDVVV 241

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM-VDEG 410
             A+ +MYGKC  +E +  VFE  P  +    N+++ +    G   +A+  F  M +  G
Sbjct: 242 SCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGG 301

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
              D+VT  T L A S  A+   G   LL+ C ++ G+++++ V   +M  YS CG I+ 
Sbjct: 302 STPDKVTFITILNACSSPATLTFG--ELLYECILQCGYDTHLIVGNCIMTMYSSCGRIDN 359

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +   F  +   + + + +I++G+++ G   EA+ +   M+  G+ PDK TF+ ++ G   
Sbjct: 360 AAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDG--- 416

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +  ++E +++   M    G++ D    S +I+M  R G + +A  L        D +MW+
Sbjct: 417 TARMQEAKILSELMVE-SGVELDVFLVSALINMHSRYGNVREARSLFDDMK-DRDIVMWT 474

Query: 591 SLLRSCRVHGN 601
           S++ S   HG+
Sbjct: 475 SIISSYVQHGS 485



 Score =  209 bits (532), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 140/546 (25%), Positives = 280/546 (51%), Gaps = 11/546 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N TI  + K G +  A  +F  +     V++N L++   +    +QA  ++  M   G+ 
Sbjct: 41  NATIHMYGKCGCVEDAVTVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLA 100

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               TF +VL  C+  G  + G  +H  VL  G   N+ +G+ L+ +Y + G    A  +
Sbjct: 101 PDRITFVTVLDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRV 160

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD+L  +++ +W  M+  + +  R  E L ++++M+  GV PN +++   +  C+    +
Sbjct: 161 FDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESM 220

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +GK +HS V++ G+ + ++ V+ A+V+ Y  CGSL +A++ F+ +P  + +SWN+IV+ 
Sbjct: 221 ADGKLIHSQVLEDGF-ESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAA 279

Query: 288 YADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
              +    +AL  F RMQL     P   +F+  LN  S    + FG+ ++  + + G+D 
Sbjct: 280 CTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGYDT 339

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             + V + +  MY  C  I+++ A F +   R     N++++    +G   +AV +F  M
Sbjct: 340 HLI-VGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRM 398

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           + EGI  D+ T  +      +  +A +   ++L    ++SG E ++ +  +L++ +SR G
Sbjct: 399 LAEGITPDKFTFISI-----IDGTARMQEAKILSELMVESGVELDVFLVSALINMHSRYG 453

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           ++  +  +F+ +   ++V +TSI++ Y ++G   +AL    +M   GL+ +  T +  L 
Sbjct: 454 NVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALN 513

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C     + EG+L+ +S     G  A     + +I+M  + G L++A+ +  Q   G + 
Sbjct: 514 ACASLTALSEGKLI-HSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQC--GKNL 570

Query: 587 MMWSSL 592
           + W+++
Sbjct: 571 VSWNTI 576



 Score =  206 bits (523), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 169/661 (25%), Positives = 323/661 (48%), Gaps = 32/661 (4%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L P   T  T+   CT+   LS   LL  +  +   + N+      I  + K G +  A+
Sbjct: 99  LAPDRITFVTVLDGCTATGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDAR 158

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           ++FD++  +D+V++  +I    +     +AL L+  M   G+  +  T+++ +S C++  
Sbjct: 159 RVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVE 218

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
              +G  IH +VL  GF  ++ +   +V++Y + G    A ++F+ +P  N  +WN ++ 
Sbjct: 219 SMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVA 278

Query: 185 AFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
           A  +     E L  + +M+ + G  P+ ++F  ++  CS    L  G+ L+  +++ G+ 
Sbjct: 279 ACTQHGCCVEALWYFQRMQLQGGSTPDKVTFITILNACSSPATLTFGELLYECILQCGY- 337

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           D ++ V N ++  YS+CG +  A   F  +   D ISWN+I+S +A      +A+ LF R
Sbjct: 338 DTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRR 397

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYG 360
           M      P   +F+  ++  +R        Q    +++L  + G    V + SAL +M+ 
Sbjct: 398 MLAEGITPDKFTFISIIDGTARM-------QEAKILSELMVESGVELDVFLVSALINMHS 450

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           +   +  + ++F+    R +    S+++S +  G+  DA+     M  EG+  ++ TL T
Sbjct: 451 RYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVT 510

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L A +   + + G  +L+H  AI+ GF ++ AV  +L++ Y++CG +E +  VF +   
Sbjct: 511 ALNACASLTALSEG--KLIHSHAIERGFAASPAVGNALINMYAKCGCLEEADLVFHQC-G 567

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            N+V + +I   Y +    REAL + + M   GL  DKV+F+ VL GC+ +    EG  +
Sbjct: 568 KNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSA---SEGSKI 624

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            N +    G+++D    + +++M   +  LD+A  +  +     D + W++++     HG
Sbjct: 625 HNILLET-GMESDHIVSTALLNMYTASKSLDEASRIFSRME-FRDIVSWNAMIAGKAEHG 682

Query: 601 NEIIGRRVANIL--MELEPV--DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
              + R    +   M+LE V  D   +  V N +S  G    S+  ++  L  KL  D G
Sbjct: 683 ---LSREAIQMFQRMQLEGVAPDKISFVTVLNAFS--GSSPSSL--KQARLVEKLISDQG 735

Query: 657 H 657
           +
Sbjct: 736 Y 736


>gi|302803813|ref|XP_002983659.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
 gi|300148496|gb|EFJ15155.1| hypothetical protein SELMODRAFT_328 [Selaginella moellendorffii]
          Length = 917

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 176/628 (28%), Positives = 320/628 (50%), Gaps = 10/628 (1%)

Query: 2   LSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           L   + P   T  T+   C+S   L+   LL +   Q     ++   N  +  +   G +
Sbjct: 298 LQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDTHLIVGNCIMTMYSSCGRI 357

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           ++A   F  M  RD +++N +ISG  +     +A++L+  M++ GI     TF   +S+ 
Sbjct: 358 DNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTF---ISII 414

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
                  E   +   ++  G  L++++ S L++++ R G    A  LFD++ +R++  W 
Sbjct: 415 DGTARMQEAKILSELMVESGVELDVFLVSALINMHSRYGNVREARSLFDDMKDRDIVMWT 474

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            ++ ++ +    D+ L     M+ EG+  N  +    +  C+    L EGK +H+H I+ 
Sbjct: 475 SIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALNACASLTALSEGKLIHAHAIER 534

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G+   +  V NAL++ Y+ CG L EA + F      +++SWN+I + Y   D   +AL+L
Sbjct: 535 GFA-ASPAVGNALINMYAKCGCLEEADRVFHQCG-KNLVSWNTIAAAYVQRDKWREALQL 592

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F  MQL   +    SFV  LN  S       G++IH  + + G +   + V +AL +MY 
Sbjct: 593 FQEMQLEGLKADKVSFVTVLNGCSSASE---GRKIHNILLETGMESDHI-VSTALLNMYT 648

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
               ++ +  +F     R +   N+++      G  ++A++MF  M  EG+  D+++  T
Sbjct: 649 ASKSLDEASRIFSRMEFRDIVSWNAMIAGKAEHGLSREAIQMFQRMQLEGVAPDKISFVT 708

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L A S S+ ++L   RL+       G+E++  V  +++  + R G +  + + FE+I  
Sbjct: 709 VLNAFSGSSPSSLKQARLVEKLISDQGYETDTIVGNAIVSMFGRSGRLAEARRAFERIRE 768

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            +   +  I+  ++++G   +AL +   M Q    PD +T + VL+ C+H G+++EG   
Sbjct: 769 RDAASWNVIVTAHAQHGEVEQALKLFRRMQQESSRPDSITLVSVLSACSHGGLIEEGYHH 828

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F SM   +GI   ++HY C++D+L RAG LD+AEELL++ P     ++W +LL +C+V G
Sbjct: 829 FTSMGREFGIAGSQEHYGCVVDLLARAGRLDQAEELLRKMPVPASYVLWMTLLSACKVQG 888

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSN 628
           +E   +RV   +MEL+P   A Y  +S+
Sbjct: 889 DEKRAKRVGERVMELDPRRPAAYVVLSS 916



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 139/491 (28%), Positives = 256/491 (52%), Gaps = 10/491 (2%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TF ++L +C+      EG  +H RV +  F  +  + +  + +Y + G    A+ +F  L
Sbjct: 4   TFLALLGLCAKKSAIAEGRFVHSRVEASEFRRDDLVQNATIHMYGKCGCVEDAVSVFQSL 63

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
              +  +WN +L AF    +  +  +++ +MK +G+ P+ ++F  ++ GCS    L  GK
Sbjct: 64  DHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLAPDRITFVTVLDGCSAIGDLSRGK 123

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            LH  V++ G ++ N+ V  +L+  Y  CG + +A++ FD + + DV+SW S++  Y  +
Sbjct: 124 LLHGFVLEAG-LERNVMVGTSLIKMYGKCGCVEDARRVFDKLALQDVVSWTSMIMTYVQH 182

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           D   +ALELF RM+     P+  ++   ++  +   ++  GK IH  V + GF+   V V
Sbjct: 183 DRCVEALELFHRMRPSGVLPNRITYATAISACAHVESMADGKLIHSQVLEDGFE-SDVVV 241

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM-VDEG 410
             A+ +MYGKC  +E +  VFE  P  +    N+++ +    G   +A+  F  M +  G
Sbjct: 242 SCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAACTQHGCCVEALWYFQRMQLQGG 301

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           I  D+VT  T L A S  A+   G   LLH C ++ G+++++ V   +M  YS CG I+ 
Sbjct: 302 ITPDKVTFITILNACSSPATLTFGE--LLHECILQCGYDTHLIVGNCIMTMYSSCGRIDN 359

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +   F  +   + + + +I++G+++ G   EA+ +   M+  G+ PDK TF+ ++ G   
Sbjct: 360 AAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRMLAEGITPDKFTFISIIDG--- 416

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +  ++E +++   M    G++ D    S +I+M  R G + +A  L        D +MW+
Sbjct: 417 TARMQEAKILSELMVE-SGVELDVFLVSALINMHSRYGNVREARSLFDDMK-DRDIVMWT 474

Query: 591 SLLRSCRVHGN 601
           S++ S   HG+
Sbjct: 475 SIISSYVQHGS 485



 Score =  213 bits (541), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 170/661 (25%), Positives = 327/661 (49%), Gaps = 32/661 (4%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L P   T  T+   C++I  LS   LL  +  +   + N+      I  + K G +  A+
Sbjct: 99  LAPDRITFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDAR 158

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           ++FD++  +D+V++  +I    +     +AL L+  M   G+  +  T+++ +S C++  
Sbjct: 159 RVFDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVE 218

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
              +G  IH +VL  GF  ++ +   +V++Y + G    A ++F+ +P  N  +WN ++ 
Sbjct: 219 SMADGKLIHSQVLEDGFESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVA 278

Query: 185 AFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
           A  +     E L  + +M+ + G+ P+ ++F  ++  CS    L  G+ LH  +++ G+ 
Sbjct: 279 ACTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGY- 337

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           D ++ V N ++  YS+CG +  A   F  +   D ISWN+I+S +A      +A+ LF R
Sbjct: 338 DTHLIVGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRR 397

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYG 360
           M      P   +F+  ++  +R        Q    +++L  + G    V + SAL +M+ 
Sbjct: 398 MLAEGITPDKFTFISIIDGTARM-------QEAKILSELMVESGVELDVFLVSALINMHS 450

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           +   +  + ++F+    R +    S+++S +  G+  DA+     M  EG+  ++ TL T
Sbjct: 451 RYGNVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVT 510

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L A +   + + G  +L+H  AI+ GF ++ AV  +L++ Y++CG +E + +VF +   
Sbjct: 511 ALNACASLTALSEG--KLIHAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQC-G 567

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            N+V + +I   Y +    REAL + + M   GL  DKV+F+ VL GC+ +    EG+ +
Sbjct: 568 KNLVSWNTIAAAYVQRDKWREALQLFQEMQLEGLKADKVSFVTVLNGCSSA---SEGRKI 624

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            N +    G+++D    + +++M   +  LD+A  +  +     D + W++++     HG
Sbjct: 625 HNILLET-GMESDHIVSTALLNMYTASKSLDEASRIFSRME-FRDIVSWNAMIAGKAEHG 682

Query: 601 NEIIGRRVANIL--MELEPV--DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
              + R    +   M+LE V  D   +  V N +S  G    S+  ++  L  KL  D G
Sbjct: 683 ---LSREAIQMFQRMQLEGVAPDKISFVTVLNAFS--GSSPSSL--KQARLVEKLISDQG 735

Query: 657 H 657
           +
Sbjct: 736 Y 736



 Score =  211 bits (538), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 141/546 (25%), Positives = 280/546 (51%), Gaps = 11/546 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N TI  + K G +  A  +F  +     V++N L++   +    +QA  ++  M   G+ 
Sbjct: 41  NATIHMYGKCGCVEDAVSVFQSLDHPSQVSWNSLLAAFARDGQFQQAFQIFQRMKLQGLA 100

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               TF +VL  CS  G  + G  +H  VL  G   N+ +G+ L+ +Y + G    A  +
Sbjct: 101 PDRITFVTVLDGCSAIGDLSRGKLLHGFVLEAGLERNVMVGTSLIKMYGKCGCVEDARRV 160

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD+L  +++ +W  M+  + +  R  E L ++++M+  GV PN +++   +  C+    +
Sbjct: 161 FDKLALQDVVSWTSMIMTYVQHDRCVEALELFHRMRPSGVLPNRITYATAISACAHVESM 220

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +GK +HS V++ G+ + ++ V+ A+V+ Y  CGSL +A++ F+ +P  + +SWN+IV+ 
Sbjct: 221 ADGKLIHSQVLEDGF-ESDVVVSCAIVNMYGKCGSLEDAREVFERMPHPNTVSWNAIVAA 279

Query: 288 YADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
              +    +AL  F RMQL     P   +F+  LN  S    + FG+ +H  + + G+D 
Sbjct: 280 CTQHGCCVEALWYFQRMQLQGGITPDKVTFITILNACSSPATLTFGELLHECILQCGYDT 339

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             + V + +  MY  C  I+++ A F +   R     N++++    +G   +AV +F  M
Sbjct: 340 HLI-VGNCIMTMYSSCGRIDNAAAFFSTMVERDAISWNTIISGHAQAGFCDEAVHLFRRM 398

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           + EGI  D+ T  +      +  +A +   ++L    ++SG E ++ +  +L++ +SR G
Sbjct: 399 LAEGITPDKFTFISI-----IDGTARMQEAKILSELMVESGVELDVFLVSALINMHSRYG 453

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           ++  +  +F+ +   ++V +TSI++ Y ++G   +AL    +M   GL+ +  T +  L 
Sbjct: 454 NVREARSLFDDMKDRDIVMWTSIISSYVQHGSSDDALGCTRLMRLEGLMGNDFTLVTALN 513

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C     + EG+L+ ++     G  A     + +I+M  + G L++A+ +  Q   G + 
Sbjct: 514 ACASLTALSEGKLI-HAHAIERGFAASPAVGNALINMYAKCGCLEEADRVFHQC--GKNL 570

Query: 587 MMWSSL 592
           + W+++
Sbjct: 571 VSWNTI 576


>gi|255562697|ref|XP_002522354.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223538432|gb|EEF40038.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 704

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 194/663 (29%), Positives = 345/663 (52%), Gaps = 19/663 (2%)

Query: 13  ITTLAPTCTSIVPLSSS-----LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           +  L   CT+I  L  +     L+L +    +   + Y +N  I  +   G  + A+KLF
Sbjct: 7   LEALIKKCTTINSLKKARQLHALILATTASTSYAQSPYLNNNLIAMYAHCGSRSDAQKLF 66

Query: 68  DEMPARDMVTYNLLISG-CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           D MP ++ ++YN LI+  C    +   +  L+ +M    ++ + +TF+S+L VC     +
Sbjct: 67  DRMPRKNAISYNALIAAYCRDSSYETLSFKLFSDMGIQRLRPNGATFTSLLQVCCLLEDW 126

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  +H +VL  G+  ++ + + L+ +Y   G    A  +F    E++   WN M+  +
Sbjct: 127 FLGSTLHGQVLQFGYVNDICVQTMLLGMYSDCGDLESACKVFGYAVEKDDVFWNSMISGY 186

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +  R  E L ++ +M   G      +    +  CS      +G+ +H+ VI +  +  +
Sbjct: 187 LKNDRIKESLSLFGEMVRSGTIFTQFTCSMALNACSKLGYYSQGRIIHAQVI-VSNILPD 245

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR--- 303
             + NAL+D Y +CG    A   F  I +  +ISWNS++S +A  +    A+ LF +   
Sbjct: 246 SALQNALLDMYYSCGDRRTALTLFSRIQIPSLISWNSMISWFAKNEEGEKAMGLFVKLLG 305

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M  C+  P   +F   ++         +G+ +H  V K G    SV + +AL  MY + +
Sbjct: 306 MSTCK--PDEYTFTAIISATGEFRATDYGQPLHAQVIKAGL-QWSVFIGNALLSMYFRNS 362

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +E++  VF     + +     ++      G+ + A+++F  M  EG   D   LS    
Sbjct: 363 DVEAARGVFSLMEEKDVVLWTEMIMGHCRLGDGESAIKLFCKMRQEGHKSDSFALS---G 419

Query: 424 ALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           ALSV A  A L   ++LH  A+K+G E+ I+V  SL+D Y++ G+++ +  +F ++ +P+
Sbjct: 420 ALSVCADLAILKQGQMLHTQAVKTGCEAEISVCGSLVDMYAKNGNLQAAQLIFSQVCNPD 479

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           + C+ S++ GYS +GM  EA+ +   +++ GL PD+VTFL +L+ CNHSG+V++G+ +++
Sbjct: 480 LKCWNSMIGGYSHHGMAEEAVMLFAEVLECGLTPDQVTFLSLLSACNHSGLVEKGKFLWD 539

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGN 601
            MK   GI    +HYSCM+ +L RAG+LD+AEEL+ ++    + + +W +LL SC    N
Sbjct: 540 YMKK-NGITPGPKHYSCMVSLLSRAGLLDEAEELITESTCSEEHLKLWRTLLSSCVNRRN 598

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             +G R A  ++ L+P D A Y  +SN Y+  G ++   ++R+      L +D G S IE
Sbjct: 599 LTVGARAAKQVLRLDPEDSATYILLSNLYAVTGRWDGVAELRKKIRGLMLEKDPGVSWIE 658

Query: 662 VNS 664
             +
Sbjct: 659 AKN 661


>gi|356544545|ref|XP_003540710.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Glycine max]
          Length = 705

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 186/623 (29%), Positives = 311/623 (49%), Gaps = 71/623 (11%)

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           +S F+ +L  C  +    +  +IH R++   F   ++I + LVD Y + G    A  +FD
Sbjct: 19  SSPFAKLLDSCVRSKSGIDARRIHARIIKTQFSSEIFIQNRLVDAYGKCGYFEDARKVFD 78

Query: 170 ELPERNL-------------------------------ATWNLMLRAFCELSRPDEVLRM 198
            +P+RN                                 +WN M+  F +  R +E LR 
Sbjct: 79  RMPQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRF 138

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           +  M +E    N  SF   +  C+    L+ G Q+H+ + K  ++ +++++ +ALVD YS
Sbjct: 139 FVDMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYL-LDVYMGSALVDMYS 197

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            CG +  A+++FD + V +++SWNS+++ Y        ALE+F  M      P   +   
Sbjct: 198 KCGVVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLAS 257

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            ++  +    +  G QIH  V K       + + +AL DMY KC  +  +  VF+  P R
Sbjct: 258 VVSACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLR 317

Query: 379 ------SLEC-------------------------CNSLMTSLLHSGNIKDAVEMFGFMV 407
                 S+ C                          N+L+     +G  ++AV +F  + 
Sbjct: 318 NVVSETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLK 377

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF------ESNIAVSCSLMDA 461
            E I     T    L A +  A   LG  R  H   +K GF      ES+I V  SL+D 
Sbjct: 378 RESIWPTHYTFGNLLNACANLADLKLG--RQAHTQILKHGFWFQSGEESDIFVGNSLIDM 435

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +CG +E    VFE++   +VV + +++ GY++NG G  AL++   M+  G  PD VT 
Sbjct: 436 YMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTM 495

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL+ C+H+G+V+EG+  F+SM++  G+   + H++CM+D+LGRAG LD+A +L+Q  P
Sbjct: 496 IGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVDLLGRAGCLDEANDLIQTMP 555

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D ++W SLL +C+VHGN  +G+ VA  LME++P++   Y  +SN Y+E+G ++  ++
Sbjct: 556 MQPDNVVWGSLLAACKVHGNIELGKYVAEKLMEIDPLNSGPYVLLSNMYAELGRWKDVVR 615

Query: 642 IRETALARKLTRDIGHSLIEVNS 664
           +R+    R + +  G S IE+ S
Sbjct: 616 VRKQMRQRGVIKQPGCSWIEIQS 638



 Score =  185 bits (469), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 137/544 (25%), Positives = 237/544 (43%), Gaps = 71/544 (13%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ N +S N  +    K G L+ A  +F  MP  D  ++N ++SG  +    ++AL  + 
Sbjct: 81  PQRNTFSYNAVLSVLTKFGKLDEAFNVFKSMPEPDQCSWNAMVSGFAQHDRFEEALRFFV 140

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M S     +  +F S LS C+       GIQIH  +    + L++Y+GS LVD+Y + G
Sbjct: 141 DMHSEDFVLNEYSFGSALSACAGLTDLNMGIQIHALISKSRYLLDVYMGSALVDMYSKCG 200

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A   FD +  RN+ +WN ++  + +     + L ++  M   GVEP+ ++   +V 
Sbjct: 201 VVACAQRAFDGMAVRNIVSWNSLITCYEQNGPAGKALEVFVMMMDNGVEPDEITLASVVS 260

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV---- 275
            C+    + EG Q+H+ V+K      ++ + NALVD Y+ C  + EA+  FD +P+    
Sbjct: 261 ACASWSAIREGLQIHARVVKRDKYRNDLVLGNALVDMYAKCRRVNEARLVFDRMPLRNVV 320

Query: 276 ---------------------------DDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
                                       +V+SWN++++ Y       +A+ LF  ++   
Sbjct: 321 SETSMVCGYARAASVKAARLMFSNMMEKNVVSWNALIAGYTQNGENEEAVRLFLLLKRES 380

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-----DHGSVHVQSALTDMYGKCN 363
             P+  +F   LN  +   ++  G+Q H  + K GF     +   + V ++L DMY KC 
Sbjct: 381 IWPTHYTFGNLLNACANLADLKLGRQAHTQILKHGFWFQSGEESDIFVGNSLIDMYMKCG 440

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           ++E    VFE    R +   N+++     +G   +A+E+F  M+  G   D VT+   L 
Sbjct: 441 MVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNALEIFRKMLVSGQKPDHVTMIGVLS 500

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A S +     G  R  H    + G                                +P  
Sbjct: 501 ACSHAGLVEEGR-RYFHSMRTELGL-------------------------------APMK 528

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
             FT +++   R G   EA D+++ M  +   PD V +  +LA C   G ++ G+ V   
Sbjct: 529 DHFTCMVDLLGRAGCLDEANDLIQTMPMQ---PDNVVWGSLLAACKVHGNIELGKYVAEK 585

Query: 544 MKSV 547
           +  +
Sbjct: 586 LMEI 589



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 45/153 (29%), Positives = 72/153 (47%), Gaps = 2/153 (1%)

Query: 35  YCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           + Q   + +I+  N  ID ++K G +     +F+ M  RD+V++N +I G  +  +   A
Sbjct: 417 WFQSGEESDIFVGNSLIDMYMKCGMVEDGCLVFERMVERDVVSWNAMIVGYAQNGYGTNA 476

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVD 153
           L ++ +M+  G K    T   VLS CS+AG   EG +  H     LG        + +VD
Sbjct: 477 LEIFRKMLVSGQKPDHVTMIGVLSACSHAGLVEEGRRYFHSMRTELGLAPMKDHFTCMVD 536

Query: 154 LYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           L  R G    A DL   +P + +   W  +L A
Sbjct: 537 LLGRAGCLDEANDLIQTMPMQPDNVVWGSLLAA 569


>gi|449438472|ref|XP_004137012.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
 gi|449493172|ref|XP_004159212.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Cucumis sativus]
          Length = 605

 Score =  293 bits (751), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 168/575 (29%), Positives = 312/575 (54%), Gaps = 18/575 (3%)

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
           H   ++ LYD  ++  +      ++S+L  C     +T G Q H  V+  G   + ++G+
Sbjct: 45  HLLNSIDLYDSRINKPL-----LYASLLQTCIKVDSFTRGRQFHAHVVKSGLETDRFVGN 99

Query: 150 PLVDLYMRMGP-SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
            L+ LY ++G  S+    +FD L  +++ +W  M+  +    +    + ++  M   G+E
Sbjct: 100 SLLSLYFKLGSDSLLTRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIE 159

Query: 209 PNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
           PNG +   +++ CS IG L+  GK  H  V++ G+ D N  + ++L+D Y       +A+
Sbjct: 160 PNGFTLSAVIKACSEIGNLV-LGKCFHGVVVRRGF-DSNPVILSSLIDMYGRNSVSSDAR 217

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF-RMQLCRKRPSIRSFVEFLNFASRT 326
           + FD +   D + W +++S +   DL  +AL  F+ + +  R  P   +F   L      
Sbjct: 218 QLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNL 277

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G +  G++IH  V   GF  G+V  +S+L DMYGKC  +E S  +F+    R+    ++L
Sbjct: 278 GRLRQGEEIHAKVIAYGFS-GNVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSAL 336

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +    H+G+ + AV +F  M +    +D  +  T ++A +  A+   G  + +HC  I+ 
Sbjct: 337 LAVYCHNGDYEKAVNLFREMKE----VDLYSFGTVIRACAGLAAVTPG--KEIHCQYIRK 390

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G   ++ V  +L+D Y++CG I  +++VF+++P+ N++ + S+++G+++NG    A+ + 
Sbjct: 391 GGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIF 450

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
           E MI+ G+ PD ++F+ +L  C+H+G+V + +  F+ M   YGI    +HY+CM+D+LGR
Sbjct: 451 EAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEHYNCMVDLLGR 510

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH-GNEIIGRRVANILMELEPVDFAVYSQ 625
           AG+L++AE L++      D  +W  LL +C     N     R+A  LMELEP  +  Y  
Sbjct: 511 AGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQCYLSYVH 570

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           ++N Y  +G ++ ++++RE    R+L +  G S +
Sbjct: 571 LANVYRAVGRWDDAVKVRELMKNRQLKKMPGQSWM 605



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 119/425 (28%), Positives = 207/425 (48%), Gaps = 16/425 (3%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
            +++FD +  +D+V++  +I+G  +      A+ L+ +M+  GI+ +  T S+V+  CS 
Sbjct: 115 TRRVFDGLFVKDVVSWASMITGYVREGKSGIAIELFWDMLDSGIEPNGFTLSAVIKACSE 174

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
            G    G   H  V+  GF  N  I S L+D+Y R   S  A  LFDEL E +   W  +
Sbjct: 175 IGNLVLGKCFHGVVVRRGFDSNPVILSSLIDMYGRNSVSSDARQLFDELLEPDPVCWTTV 234

Query: 183 LRAFCELSRPDEVLR-MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           + AF      +E L   Y K +A  + P+  +F  ++  C     L +G+++H+ VI  G
Sbjct: 235 ISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFGSVLTACGNLGRLRQGEEIHAKVIAYG 294

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY---ADYDLIFDAL 298
           +   N+   ++LVD Y  CG++ ++++ FD +   + +SW++++++Y    DY+    A+
Sbjct: 295 FSG-NVVTESSLVDMYGKCGAVEKSQRLFDRMSNRNSVSWSALLAVYCHNGDYE---KAV 350

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH-GYVTKLGFDHGSVHVQSALTD 357
            LF  M    K   + SF   +   +    V  GK+IH  Y+ K G+    V V+SAL D
Sbjct: 351 NLFREM----KEVDLYSFGTVIRACAGLAAVTPGKEIHCQYIRKGGWR--DVIVESALVD 404

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           +Y KC  I  +  VF+  P R+L   NS++     +G+   A+++F  M+ EGI  D ++
Sbjct: 405 LYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIAIQIFEAMIKEGIKPDCIS 464

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A S +   +            K G +  +     ++D   R G +E +  + E 
Sbjct: 465 FIGLLFACSHTGLVDQAR-HYFDLMTGKYGIKPGVEHYNCMVDLLGRAGLLEEAENLIEN 523

Query: 478 IPSPN 482
               N
Sbjct: 524 AECRN 528



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 112/391 (28%), Positives = 193/391 (49%), Gaps = 27/391 (6%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-----SSLLLDSYCQPNPQLNIYSSNRTIDDFV 55
           ML + + P   T++ +   C+ I  L        +++      NP   I SS   ID + 
Sbjct: 153 MLDSGIEPNGFTLSAVIKACSEIGNLVLGKCFHGVVVRRGFDSNPV--ILSS--LIDMYG 208

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL-YLYDEMVSHGIKESASTFS 114
           ++   + A++LFDE+   D V +  +IS   +    ++AL + Y +  +H +     TF 
Sbjct: 209 RNSVSSDARQLFDELLEPDPVCWTTVISAFTRNDLYEEALGFFYLKHRAHRLCPDNYTFG 268

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           SVL+ C N G   +G +IH +V++ GF  N+   S LVD+Y + G   ++  LFD +  R
Sbjct: 269 SVLTACGNLGRLRQGEEIHAKVIAYGFSGNVVTESSLVDMYGKCGAVEKSQRLFDRMSNR 328

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N  +W+ +L  +C     ++ + ++ +MK    E +  SF  ++R C+    +  GK++H
Sbjct: 329 NSVSWSALLAVYCHNGDYEKAVNLFREMK----EVDLYSFGTVIRACAGLAAVTPGKEIH 384

Query: 235 SHVI-KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
              I K GW DV   V +ALVD Y+ CG +  A + FD +P  ++I+WNS++  +A    
Sbjct: 385 CQYIRKGGWRDV--IVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGS 442

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGS 348
              A+++F  M     +P   SF+  L   S TG V     YF      Y  K G +H  
Sbjct: 443 SGIAIQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQARHYFDLMTGKYGIKPGVEH-- 500

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
               + + D+ G+  ++E +  + E+A  R+
Sbjct: 501 ---YNCMVDLLGRAGLLEEAENLIENAECRN 528



 Score = 57.0 bits (136), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 43/185 (23%), Positives = 86/185 (46%), Gaps = 7/185 (3%)

Query: 35  YCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           Y +     ++   +  +D + K G +N A ++FD MP R+++T+N +I G  +      A
Sbjct: 387 YIRKGGWRDVIVESALVDLYAKCGCINFAYRVFDRMPTRNLITWNSMIHGFAQNGSSGIA 446

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLV 152
           + +++ M+  GIK    +F  +L  CS+ G   +  + +  +++  +G+   +   + +V
Sbjct: 447 IQIFEAMIKEGIKPDCISFIGLLFACSHTGLVDQA-RHYFDLMTGKYGIKPGVEHYNCMV 505

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           DL  R G    A +L +    RN ++  L+L   C  +  +         K   +EP   
Sbjct: 506 DLLGRAGLLEEAENLIENAECRNDSSLWLVLLGACTTTCTNSATAERIAKKLMELEPQ-- 563

Query: 213 SFCYM 217
             CY+
Sbjct: 564 --CYL 566


>gi|326529685|dbj|BAK04789.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 879

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 179/625 (28%), Positives = 333/625 (53%), Gaps = 9/625 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +I+ +N  +  +   G ++ A+++FDE    R+ V++N ++S   K      A+ L+ EM
Sbjct: 134 DIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEM 193

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  G++ +   FS V++ C+ +     G ++H  V+  G+  +++  + LVD+Y ++G  
Sbjct: 194 VWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDKDVFTANALVDMYSKLGDI 253

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDE-VLRMYNKMKAEGVEPNGLSFCYMVRG 220
             A  +F ++P+ ++ +WN  +   C L   D+  L +  +MK+ G+ PN  +   +++ 
Sbjct: 254 HMAALVFGKVPKTDVVSWNAFISG-CVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKA 312

Query: 221 CSIGMLLDEG--KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           C+          +Q+H  +IK    D + ++  ALVD Y+  G L +A+K F++IP  D+
Sbjct: 313 CAGAGAGAFALGRQIHGFMIK-ACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDL 371

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           + WN+++S  +      ++L LF RM+      +  +    L   +    +    Q+H  
Sbjct: 372 LLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQVHAL 431

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K+GF   S HV + L D Y KCN +  +  VFE     ++    S++T+L    + +D
Sbjct: 432 AEKIGFLSDS-HVVNGLIDSYWKCNCLRYANKVFEEHSSDNIIAFTSMITALSQCDHGED 490

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+++F  M+ +G+  D   LS+ L A +  ++   G  + +H   IK  F +++    +L
Sbjct: 491 AIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQG--KQVHAHLIKRKFMTDVFAGNAL 548

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG IE +   F  +P   VV +++++ G +++G G+ ALD+   M+   + P+ 
Sbjct: 549 VYTYAKCGSIEDADLAFSGLPDKGVVSWSAMIGGLAQHGHGKRALDVFRRMVDERIAPNH 608

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +T   VL  CNH+G+V E +  F+SMK ++GID   +HYSCMID+LGRAG LD A EL+ 
Sbjct: 609 ITLTSVLCACNHAGLVDEAKGYFSSMKEMFGIDRTEEHYSCMIDLLGRAGKLDDAMELVN 668

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   +  +W +LL + RVH +  +G+  A  L  LEP     +  ++N Y+  G ++ 
Sbjct: 669 SMPFEANAAVWGALLAASRVHRDPELGKLAAEKLFVLEPEKSGTHVLLANTYASAGMWDE 728

Query: 639 SMQIRETALARKLTRDIGHSLIEVN 663
             ++R+     K+ ++   S +E+ 
Sbjct: 729 VAKVRKLMKDSKVKKEPAMSWVELK 753



 Score =  221 bits (564), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 154/563 (27%), Positives = 278/563 (49%), Gaps = 27/563 (4%)

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           SA+++FDE P    V+++ L++       P++AL  +  M + G++ +      VL    
Sbjct: 55  SARRVFDETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAP 114

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWN 180
           +AG    G+Q+H   +S G   ++++ + LV +Y   G    A  +FDE   +RN  +WN
Sbjct: 115 DAGL---GVQVHAVAVSTGLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWN 171

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            M+ AF +  R  + + ++ +M   GV PN   F  +V  C+    L+ G+++H+ V++ 
Sbjct: 172 GMMSAFVKNDRCSDAVELFGEMVWSGVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRT 231

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G+ D ++F ANALVD YS  G +  A   F  +P  DV+SWN+ +S    +     ALEL
Sbjct: 232 GY-DKDVFTANALVDMYSKLGDIHMAALVFGKVPKTDVVSWNAFISGCVLHGHDQHALEL 290

Query: 301 FFRMQLCRKRPSIRSFVEFLN--FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
             +M+     P++ +    L     +  G    G+QIHG++ K   D    ++  AL DM
Sbjct: 291 LLQMKSSGLVPNVFTLSSILKACAGAGAGAFALGRQIHGFMIKACADSDD-YIGVALVDM 349

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y K  +++ +  VFE  P + L   N+L++   H G   +++ +F  M  EG  ++  TL
Sbjct: 350 YAKYGLLDDARKVFEWIPRKDLLLWNALISGCSHGGCHGESLSLFCRMRKEGSDINRTTL 409

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           +  LK  S ++   +     +H  A K GF S+  V   L+D+Y +C  +  +++VFE+ 
Sbjct: 410 AAVLK--STASLEAISDTTQVHALAEKIGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEH 467

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            S N++ FTS++   S+   G +A+ +   M+++GL PD      +L  C      ++G+
Sbjct: 468 SSDNIIAFTSMITALSQCDHGEDAIKLFMEMLRKGLEPDPFVLSSLLNACASLSAYEQGK 527

Query: 539 LVFNS------MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            V         M  V+  +A       ++    + G ++ A+      P  G  + WS++
Sbjct: 528 QVHAHLIKRKFMTDVFAGNA-------LVYTYAKCGSIEDADLAFSGLPDKG-VVSWSAM 579

Query: 593 LRSCRVHGNEIIGRRVANILMEL 615
           +     HG+   G+R  ++   +
Sbjct: 580 IGGLAQHGH---GKRALDVFRRM 599



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 136/537 (25%), Positives = 258/537 (48%), Gaps = 15/537 (2%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  IH  +L  G  L+ +  + L+  Y +      A  +FDE P+    +W+ ++ A+  
Sbjct: 23  GAHIHAHLLKSGL-LHAF-RNHLLSFYSKCRLPGSARRVFDETPDPCHVSWSSLVTAYSN 80

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
            + P E L  +  M+A GV  N  +   +++ C+    L  G Q+H+  +  G +  +IF
Sbjct: 81  NALPREALAAFRAMRARGVRCNEFALPIVLK-CAPDAGL--GVQVHAVAVSTG-LSGDIF 136

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           VANALV  Y   G + EA++ FD    D + +SWN ++S +   D   DA+ELF  M   
Sbjct: 137 VANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMMSAFVKNDRCSDAVELFGEMVWS 196

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             RP+   F   +N  + + ++  G+++H  V + G+D   V   +AL DMY K   I  
Sbjct: 197 GVRPNEFGFSCVVNACTGSRDLEAGRKVHAMVVRTGYDK-DVFTANALVDMYSKLGDIHM 255

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  VF   P   +   N+ ++  +  G+ + A+E+   M   G+  +  TLS+ LKA + 
Sbjct: 256 AALVFGKVPKTDVVSWNAFISGCVLHGHDQHALELLLQMKSSGLVPNVFTLSSILKACAG 315

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           + +      R +H   IK+  +S+  +  +L+D Y++ G ++ + +VFE IP  +++ + 
Sbjct: 316 AGAGAFALGRQIHGFMIKACADSDDYIGVALVDMYAKYGLLDDARKVFEWIPRKDLLLWN 375

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           ++++G S  G   E+L +   M + G   ++ T   VL        + +   V +++   
Sbjct: 376 ALISGCSHGGCHGESLSLFCRMRKEGSDINRTTLAAVLKSTASLEAISDTTQV-HALAEK 434

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV--HGNEIIG 605
            G  +D    + +ID   +   L  A ++ ++     + + ++S++ +     HG + I 
Sbjct: 435 IGFLSDSHVVNGLIDSYWKCNCLRYANKVFEEH-SSDNIIAFTSMITALSQCDHGEDAIK 493

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI--GHSLI 660
             +  +   LEP  F V S + N  + +  +E   Q+    + RK   D+  G++L+
Sbjct: 494 LFMEMLRKGLEPDPF-VLSSLLNACASLSAYEQGKQVHAHLIKRKFMTDVFAGNALV 549



 Score = 52.4 bits (124), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 43/177 (24%), Positives = 80/177 (45%), Gaps = 8/177 (4%)

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           ++S  L   + + S  LG+   +H   +KSG     A    L+  YS+C     + +VF+
Sbjct: 6   SISPLLTRYAATQSLFLGA--HIHAHLLKSGLLH--AFRNHLLSFYSKCRLPGSARRVFD 61

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
           + P P  V ++S++  YS N + REAL     M  RG+  ++     VL     +G+  +
Sbjct: 62  ETPDPCHVSWSSLVTAYSNNALPREALAAFRAMRARGVRCNEFALPIVLKCAPDAGLGVQ 121

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
              V  S     G+  D    + ++ M G  G +D+A  +  +     + + W+ ++
Sbjct: 122 VHAVAVST----GLSGDIFVANALVAMYGGFGFVDEARRVFDEAARDRNAVSWNGMM 174


>gi|297798412|ref|XP_002867090.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297312926|gb|EFH43349.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 803

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 188/639 (29%), Positives = 328/639 (51%), Gaps = 15/639 (2%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CG 86
           +L D Y +   QLN  +  R +  F  SG +  A +LFDEM   D   +N++I G   CG
Sbjct: 47  VLRDRY-KVTKQLNDPALTRALRGFADSGLMEDALQLFDEMNKADTFVWNVMIKGFTSCG 105

Query: 87  KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY 146
            +    +AL LY  MV  G+K  + T+  V+   +      EG +IH  V+ L F  ++Y
Sbjct: 106 LYF---EALQLYCRMVFSGVKADSFTYPFVIKSVTGISSLEEGKKIHAMVIKLRFVSDVY 162

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
           + + L+ LYM++G S  A  +F+E+PER++ +WN M+  +  L      L ++ +M   G
Sbjct: 163 VCNSLISLYMKLGCSWDAEKVFEEMPERDIVSWNSMISGYLALEDGFRSLMLFKEMLKFG 222

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
            +P+  S    +  CS     + GK+LH H ++      ++ V  +++D YS  G +  A
Sbjct: 223 FKPDRFSTMSALGACSHVYSPNMGKELHCHAVRSRIETGDVMVMTSILDMYSKYGEVSYA 282

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASR 325
           ++ F  I   ++++WN ++  YA    + DA   F +M +    +P + + +  L   + 
Sbjct: 283 ERIFKCIIQRNIVAWNVLIGCYARNSRVTDAFLCFQKMSEQNGLQPDVITLINLLPACA- 341

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  G+ IHGY  + GF    V + +AL DMYG+   ++S+  +F+    ++L   NS
Sbjct: 342 ---ILEGRTIHGYAMRRGFLPHIV-LDTALIDMYGEWGQLKSAEVIFDRIAEKNLISWNS 397

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++ + + +G    A+E+F  + D  +  D  T+++ L A + S S + G  R +H   +K
Sbjct: 398 IIAAYVQNGKNYSALELFQKLWDSSLLPDSTTIASILPAYAESLSLSEG--RQIHAYIVK 455

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           S + SN  +  SL+  Y+ CG +E + + F  +   +VV + SI+  Y+ +G GR ++ +
Sbjct: 456 SRYGSNTIILNSLVHMYAMCGDLEDARKCFNHVLLKDVVSWNSIIMAYAVHGFGRISVCL 515

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              MI   + P+K TF  +LA C+ SGMV EG   F SMK  YGID   +HY  M+D++G
Sbjct: 516 FSEMIASKVDPNKSTFASLLAACSISGMVDEGWEYFESMKREYGIDPGIEHYGYMLDLIG 575

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           R G    A+  +++ P      +W SLL + R H +  +    A  + ++E  +   Y  
Sbjct: 576 RTGNFSSAKRFIREMPFLPTARIWGSLLNASRNHNDITVAEFAAEQIFKMEHDNTGCYVL 635

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           + N Y+E   +E   +I+    ++ ++R    S +E  S
Sbjct: 636 LLNMYAEARRWEDVNRIKLLMESKGISRTSSRSTVEAKS 674


>gi|413944176|gb|AFW76825.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 823

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 189/618 (30%), Positives = 314/618 (50%), Gaps = 14/618 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           QL+ + +N  ++ + K G L +A++LFD MP R+ V++  L+ G       ++AL L+  
Sbjct: 79  QLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGYALRGEFEEALELFRR 138

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +   G + +    +++L V            IH     LG   N ++G+ L+D Y   G 
Sbjct: 139 LQREGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDRNAFVGTALIDAYSLCGA 198

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +  ++  TW  M+  + E   P+  L  ++KM+  G +PN       ++ 
Sbjct: 199 VCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKMRMTGFKPNPFVLTSALKA 258

Query: 221 --CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C    LL  GK +H   +K  + D    V  AL+D Y+ CG + +A   F+ IP DDV
Sbjct: 259 AVCLSSALL--GKGIHGCSVKTLY-DTEPHVGGALLDMYAKCGDIEDAHAIFEMIPHDDV 315

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           I W+ ++S YA       A E+F RM      P+  S    L   +    +  G+QIH  
Sbjct: 316 ILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQACANIAFLELGEQIHNL 375

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             KLG++   + V +AL DMY KC  +E+S+ +F S    +    N+++     SG  +D
Sbjct: 376 AIKLGYE-SELFVGNALMDMYAKCRNMENSLEIFSSLQDANEVSWNTIIVGYCQSGFAED 434

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M    +   +VT S+ L+A + ++S  +     +H    KS F ++  V  SL
Sbjct: 435 ALSVFHEMRAAHMLSTQVTFSSVLRACANTSS--IKHAVQIHSLIEKSTFNNDTIVCNSL 492

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++CG I  + +VFE I   +VV + SI++ Y+ +G    AL++ + M +  +  + 
Sbjct: 493 IDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALHGRATNALELFDRMNKSDIKAND 552

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ +L+ C  +G+V +G  +FNSM   + I    +HY+C++ +LGRAG L  A + + 
Sbjct: 553 VTFVSLLSVCGSTGLVNQGLWLFNSMMMDHRIKPSMEHYTCIVRLLGRAGRLTDALKFIG 612

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P     M+W +LL SC VH N  +GR  A  ++++EP D   Y  +SN Y+  G  + 
Sbjct: 613 DIPSTPSPMVWRALLSSCVVHKNVALGRYAAEKVLDIEPHDETTYVLLSNMYAAAGILD- 671

Query: 639 SMQIRETALARKLTRDIG 656
                E AL RK  R++G
Sbjct: 672 -----EVALWRKSMRNVG 684



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 102/401 (25%), Positives = 195/401 (48%), Gaps = 6/401 (1%)

Query: 36  CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL 95
           C+     N +     ID +   G +  A+ +FD +  +D VT+  ++S   +   P+ AL
Sbjct: 175 CKLGHDRNAFVGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYAL 234

Query: 96  YLYDEMVSHGIKESASTFSSVL--SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
             + +M   G K +    +S L  +VC ++    +GI   C V +L +    ++G  L+D
Sbjct: 235 NTFSKMRMTGFKPNPFVLTSALKAAVCLSSALLGKGIH-GCSVKTL-YDTEPHVGGALLD 292

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A  +F+ +P  ++  W+ ++  + +  + ++   M+ +M    V PN  S
Sbjct: 293 MYAKCGDIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFS 352

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              +++ C+    L+ G+Q+H+  IKLG+ +  +FV NAL+D Y+ C ++  + + F  +
Sbjct: 353 LSGVLQACANIAFLELGEQIHNLAIKLGY-ESELFVGNALMDMYAKCRNMENSLEIFSSL 411

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              + +SWN+I+  Y       DAL +F  M+      +  +F   L   + T ++    
Sbjct: 412 QDANEVSWNTIIVGYCQSGFAEDALSVFHEMRAAHMLSTQVTFSSVLRACANTSSIKHAV 471

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           QIH  + K  F++ ++ V ++L D Y KC  I  ++ VFES     +   NS++++    
Sbjct: 472 QIHSLIEKSTFNNDTI-VCNSLIDTYAKCGFIRDALKVFESIVECDVVSWNSIISAYALH 530

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           G   +A+E+F  M    I  ++VT  + L     +   N G
Sbjct: 531 GRATNALELFDRMNKSDIKANDVTFVSLLSVCGSTGLVNQG 571



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/367 (24%), Positives = 186/367 (50%), Gaps = 10/367 (2%)

Query: 230 GKQLHSHVIKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           G+ +H+ V++ G V  ++ F AN L++FY+  G L  A++ FD +P  + +S+ +++  Y
Sbjct: 64  GRAVHARVVQRGGVAQLDTFCANVLLNFYAKLGPLATARRLFDGMPERNRVSFVTLMQGY 123

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           A      +ALELF R+Q  R+   +  FV    L              IH    KLG D 
Sbjct: 124 ALRGEFEEALELFRRLQ--REGHEVNHFVLTTILKVLVTMDAPGLACGIHACACKLGHDR 181

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            +  V +AL D Y  C  +  +  VF+   G+      ++++    +   + A+  F  M
Sbjct: 182 NAF-VGTALIDAYSLCGAVCHARCVFDGIVGKDAVTWTAMVSCYSENDIPEYALNTFSKM 240

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              G   +   L++ LKA    +SA LG  + +H C++K+ +++   V  +L+D Y++CG
Sbjct: 241 RMTGFKPNPFVLTSALKAAVCLSSALLG--KGIHGCSVKTLYDTEPHVGGALLDMYAKCG 298

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            IE +H +FE IP  +V+ ++ +++ Y+++    +A +M   M++  ++P++ +   VL 
Sbjct: 299 DIEDAHAIFEMIPHDDVILWSFLISRYAQSCQNEQAFEMFLRMMRSFVVPNEFSLSGVLQ 358

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C +   ++ G+ + N +    G +++    + ++DM  +   ++ + E+        + 
Sbjct: 359 ACANIAFLELGEQIHN-LAIKLGYESELFVGNALMDMYAKCRNMENSLEIFSSLQDANE- 416

Query: 587 MMWSSLL 593
           + W++++
Sbjct: 417 VSWNTII 423


>gi|92429671|gb|ABE77204.1| unknown [Sorghum bicolor]
          Length = 795

 Score =  293 bits (750), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 174/612 (28%), Positives = 318/612 (51%), Gaps = 7/612 (1%)

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           V +G ++ A   F  +       +N++I G      P  AL  Y  M+  G +    TF 
Sbjct: 65  VAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGARPDRFTFP 124

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
            VL  C+ AG   EG   H  V+ LG G ++Y  + LV LY ++G    A  +FD +P R
Sbjct: 125 VVLKCCARAGALGEGRAAHAAVIKLGLGADVYTANSLVALYAKLGLVGDAERVFDGMPAR 184

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++ +WN M+  +         L  + +M  A  V  + +     +  C +   L  G+++
Sbjct: 185 DIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLESALALGREI 244

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H + I+ G ++ ++ V  +LVD Y  CG++  A+  F  +P+  V++WN ++  YA  + 
Sbjct: 245 HGYAIRHG-LEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCMIGGYALNER 303

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-DHGSVHVQ 352
             DA + F +M++   +  + + +  L   ++T +  FG+ +H YV +  F  H  V ++
Sbjct: 304 PVDAFDCFMQMRVDGFQVEVVTAINLLTACAQTESSLFGRSVHAYVVRRHFLPH--VVLE 361

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL +MYGK   +ESS  +F     ++L   N+++ + ++    ++A+ +F  ++++ + 
Sbjct: 362 TALLEMYGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLY 421

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D  T++T + A  +  S  +  C+ +H   +K G+  +  +  ++M  Y+RCG+I  S 
Sbjct: 422 PDYFTMTTVVPAFVLLGS--IRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASR 479

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           ++F+K+P  +V+ + +I+ GY+ +G G+ AL+M + M   G+ P++ TF+ VL  C+ SG
Sbjct: 480 EIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSG 539

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  EG   FNSM+  YG+    +HY CM D+LGRAG L +    ++  P      +W SL
Sbjct: 540 LEAEGWKEFNSMQQEYGMIPQIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSL 599

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L + R   +  I    A  + +LE  +   Y  +S+ Y++ G +E   +IR     + L 
Sbjct: 600 LTASRNKNDIDIAEYAAERIFQLEHNNTGCYVVLSSMYADAGRWEDVERIRSLMKEKGLR 659

Query: 653 RDIGHSLIEVNS 664
           R    SL+E+N+
Sbjct: 660 RTEARSLVELNN 671



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 113/476 (23%), Positives = 228/476 (47%), Gaps = 17/476 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
           ++Y++N  +  + K G +  A+++FD MPARD+V++N ++ G         AL  + EM 
Sbjct: 154 DVYTANSLVALYAKLGLVGDAERVFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMN 213

Query: 102 ----VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
               V H   +S    +++ + C  +     G +IH   +  G   ++ +G+ LVD+Y +
Sbjct: 214 DALQVGH---DSVGVIAALAACCLESALAL-GREIHGYAIRHGLEQDVKVGTSLVDMYCK 269

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A ++F ++P R + TWN M+  +    RP +    + +M+ +G +   ++   +
Sbjct: 270 CGNVFFAENVFAKMPLRTVVTWNCMIGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINL 329

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C+       G+ +H++V++  ++  ++ +  AL++ Y   G +  ++K F  I    
Sbjct: 330 LTACAQTESSLFGRSVHAYVVRRHFLP-HVVLETALLEMYGKVGKVESSEKIFGQITDKT 388

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           ++SWN++++ Y   ++  +A+ LF  +      P   +    +      G++   KQ+H 
Sbjct: 389 LVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHS 448

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           Y+ KLG+   ++ + +A+  MY +C  I +S  +F+  PG+ +   N+++      G  K
Sbjct: 449 YIVKLGYGDSTL-IMNAVMHMYARCGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGK 507

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A+EMF  M   G+  +E T  + L A SVS     G  +  +    + G    I     
Sbjct: 508 IALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEG-WKEFNSMQQEYGMIPQIEHYGC 566

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           + D   R G +    +  E +P +P    + S++   SRN   +  +D+ E   +R
Sbjct: 567 MTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTA-SRN---KNDIDIAEYAAER 618



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 89/337 (26%), Positives = 157/337 (46%), Gaps = 19/337 (5%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +L+  + A G + EA  +F  +        N ++  +AD DL  DAL  +  M     R
Sbjct: 58  KSLILSHVAAGRMDEAADAFAGVTRPGAFLHNVMIRGFADADLPLDALAAYRAMLDAGAR 117

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   +F   L   +R G +  G+  H  V KLG     V+  ++L  +Y K  ++  +  
Sbjct: 118 PDRFTFPVVLKCCARAGALGEGRAAHAAVIKLGLG-ADVYTANSLVALYAKLGLVGDAER 176

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSA 429
           VF+  P R +   N+++   + +G    A+  F  M D   +G D V +   L A  + +
Sbjct: 177 VFDGMPARDIVSWNTMVDGYVSNGMGALALACFREMNDALQVGHDSVGVIAALAACCLES 236

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           +  LG  R +H  AI+ G E ++ V  SL+D Y +CG++  +  VF K+P   VV +  +
Sbjct: 237 ALALG--REIHGYAIRHGLEQDVKVGTSLVDMYCKCGNVFFAENVFAKMPLRTVVTWNCM 294

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + GY+ N    +A D    M   G   + VT + +L  C  +    E  L   S+ + Y 
Sbjct: 295 IGGYALNERPVDAFDCFMQMRVDGFQVEVVTAINLLTACAQT----ESSLFGRSVHA-YV 349

Query: 550 IDADRQHY-------SCMIDMLGRAGILDKAEELLQQ 579
           +   R+H+       + +++M G+ G ++ +E++  Q
Sbjct: 350 V---RRHFLPHVVLETALLEMYGKVGKVESSEKIFGQ 383



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 59/257 (22%), Positives = 130/257 (50%), Gaps = 6/257 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G + S++K+F ++  + +V++N +I+        ++A+ L+ E+++  +     T 
Sbjct: 368 YGKVGKVESSEKIFGQITDKTLVSWNNMIAAYMYMEMYQEAIALFLELLNQPLYPDYFTM 427

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           ++V+      G   +  Q+H  ++ LG+G +  I + ++ +Y R G  V + ++FD++P 
Sbjct: 428 TTVVPAFVLLGSIRQCKQMHSYIVKLGYGDSTLIMNAVMHMYARCGNIVASREIFDKMPG 487

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG-KQ 232
           +++ +WN ++  +    +    L M+++MK  G+EPN  +F  ++  CS+  L  EG K+
Sbjct: 488 KDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSVLTACSVSGLEAEGWKE 547

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVSI---Y 288
            +S   + G +   I     + D     G L E  +  + +P+      W S+++     
Sbjct: 548 FNSMQQEYGMIP-QIEHYGCMTDLLGRAGELREVLRFIENMPIAPTSRIWGSLLTASRNK 606

Query: 289 ADYDLIFDALELFFRMQ 305
            D D+   A E  F+++
Sbjct: 607 NDIDIAEYAAERIFQLE 623



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 39/135 (28%), Positives = 72/135 (53%), Gaps = 7/135 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSS----NRTIDDFVK 56
           +L+  L P   T+TT+ P    +  +     + SY     +L    S    N  +  + +
Sbjct: 415 LLNQPLYPDYFTMTTVVPAFVLLGSIRQCKQMHSYIV---KLGYGDSTLIMNAVMHMYAR 471

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
            G++ +++++FD+MP +D++++N +I G       K AL ++DEM   G++ + STF SV
Sbjct: 472 CGNIVASREIFDKMPGKDVISWNTIIIGYAIHGQGKIALEMFDEMKCSGMEPNESTFVSV 531

Query: 117 LSVCSNAGFYTEGIQ 131
           L+ CS +G   EG +
Sbjct: 532 LTACSVSGLEAEGWK 546


>gi|356577722|ref|XP_003556972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Glycine max]
          Length = 820

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 182/628 (28%), Positives = 333/628 (53%), Gaps = 21/628 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEM--PARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-- 103
           N  I  + K G   +A  +F  M    RD+V+++ +IS         +AL  +  M+   
Sbjct: 78  NSLITLYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQCS 137

Query: 104 -HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPS 161
            + I  +   F+++L  CSN  F+T G+ I   +L  G F  ++ +G  L+D++ + G  
Sbjct: 138 RNIIYPNEYCFTALLRSCSNPLFFTTGLAIFAFLLKTGYFDSHVCVGCALIDMFTKGGLD 197

Query: 162 VRALDL-FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
           +++  + FD++  +NL TW LM+  + +L   D+ + ++ ++      P+  +   ++  
Sbjct: 198 IQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTSLLSA 257

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C        GKQLHS VI+ G +  ++FV   LVD Y+   ++  ++K F+ +   +V+S
Sbjct: 258 CVELEFFSLGKQLHSWVIRSG-LASDVFVGCTLVDMYAKSAAVENSRKIFNTMLHHNVMS 316

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +++S Y       +A++LF  M      P+  +F   L   +   +   GKQ+HG   
Sbjct: 317 WTALISGYVQSRQEQEAIKLFCNMLHGHVTPNCFTFSSVLKACASLPDFGIGKQLHGQTI 376

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLG    +  V ++L +MY +   +E +   F     ++L   N+   +   +    D+ 
Sbjct: 377 KLGLSTINC-VGNSLINMYARSGTMECARKAFNILFEKNLISYNTAADA---NAKALDSD 432

Query: 401 EMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSC 456
           E F   V+  G+G    T +  L     S +A +G+      +H   +KSGF +N+ ++ 
Sbjct: 433 ESFNHEVEHTGVGASPFTYACLL-----SGAACIGTIVKGEQIHALIVKSGFGTNLCINN 487

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+  YS+CG+ E + QVF  +   NV+ +TSI++G++++G   +AL++   M++ G+ P
Sbjct: 488 ALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEMLEIGVKP 547

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           ++VT++ VL+ C+H G++ E    FNSM   + I    +HY+CM+D+LGR+G+L +A E 
Sbjct: 548 NEVTYIAVLSACSHVGLIDEAWKHFNSMHYNHSISPRMEHYACMVDLLGRSGLLLEAIEF 607

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +   P   D ++W + L SCRVH N  +G   A  ++E EP D A Y  +SN Y+  G +
Sbjct: 608 INSMPFDADALVWRTFLGSCRVHRNTKLGEHAAKKILEREPHDPATYILLSNLYASEGRW 667

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVNS 664
           +    +R++   +KL ++ G+S IEV++
Sbjct: 668 DDVAALRKSMKQKKLIKETGYSWIEVDN 695



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 73/310 (23%), Positives = 151/310 (48%), Gaps = 14/310 (4%)

Query: 292 DLIFDAL-ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
           DL F++L +   R+ L    P I+S +  L    R+GN+  GK +H  +   G    SV 
Sbjct: 18  DLKFESLRKAISRLDLTTTSPLIKSSL-LLKACIRSGNLELGKLLHHKLIDSGLPLDSVL 76

Query: 351 VQSALTDMYGKCNVIESSVAVFESA--PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           + S +T +Y KC   E+++++F +     R L   +++++   ++     A+  F  M+ 
Sbjct: 77  LNSLIT-LYSKCGDWENALSIFRNMGHHKRDLVSWSAIISCFANNSMESRALLTFLHMLQ 135

Query: 409 ---EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSR 464
                I  +E   +  L++ S       G    +    +K+G F+S++ V C+L+D +++
Sbjct: 136 CSRNIIYPNEYCFTALLRSCSNPLFFTTGLA--IFAFLLKTGYFDSHVCVGCALIDMFTK 193

Query: 465 CG-HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
            G  I+ +  VF+K+   N+V +T ++  YS+ G+  +A+D+   ++     PDK T   
Sbjct: 194 GGLDIQSARMVFDKMQHKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTPDKFTLTS 253

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L+ C        G+ + +S     G+ +D      ++DM  ++  ++ + ++   T   
Sbjct: 254 LLSACVELEFFSLGKQL-HSWVIRSGLASDVFVGCTLVDMYAKSAAVENSRKIF-NTMLH 311

Query: 584 GDCMMWSSLL 593
            + M W++L+
Sbjct: 312 HNVMSWTALI 321



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/152 (26%), Positives = 79/152 (51%), Gaps = 5/152 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+  +N  I  + K G+  +A ++F++M  R+++T+  +ISG  K     +AL L+ EM+
Sbjct: 482 NLCINNALISMYSKCGNKEAALQVFNDMGYRNVITWTSIISGFAKHGFATKALELFYEML 541

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGP 160
             G+K +  T+ +VLS CS+ G   E  + H   +     ++  +   + +VDL  R G 
Sbjct: 542 EIGVKPNEVTYIAVLSACSHVGLIDEAWK-HFNSMHYNHSISPRMEHYACMVDLLGRSGL 600

Query: 161 SVRALDLFDELP-ERNLATWNLMLRAFCELSR 191
            + A++  + +P + +   W   L + C + R
Sbjct: 601 LLEAIEFINSMPFDADALVWRTFLGS-CRVHR 631



 Score = 39.3 bits (90), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 58/232 (25%), Positives = 95/232 (40%), Gaps = 39/232 (16%)

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS--------VSASANLGSCR 437
           L+ + + SGN++    +   ++D G+ LD V L++ +   S        +S   N+G  +
Sbjct: 45  LLKACIRSGNLELGKLLHHKLIDSGLPLDSVLLNSLITLYSKCGDWENALSIFRNMGHHK 104

Query: 438 --LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
             L+   AI S F +N   S +L+             Q    I  PN  CFT+++   S 
Sbjct: 105 RDLVSWSAIISCFANNSMESRALLTFLHML-------QCSRNIIYPNEYCFTALLRSCSN 157

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
                  L +   +++ G     V   CV  GC    M  +G L   S + V+      Q
Sbjct: 158 PLFFTTGLAIFAFLLKTGYFDSHV---CV--GCALIDMFTKGGLDIQSARMVFD---KMQ 209

Query: 556 H-----YSCMIDMLGRAGILDKAEELL------QQTPGGGDCMMWSSLLRSC 596
           H     ++ MI    + G+LD A +L       + TP   D    +SLL +C
Sbjct: 210 HKNLVTWTLMITRYSQLGLLDDAVDLFCRLLVSEYTP---DKFTLTSLLSAC 258


>gi|414586383|tpg|DAA36954.1| TPA: hypothetical protein ZEAMMB73_991125 [Zea mays]
          Length = 1021

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 177/624 (28%), Positives = 327/624 (52%), Gaps = 5/624 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  +  I+ +VK G ++ AKK+FD    +++V +N ++ G  +    ++ + ++  M 
Sbjct: 358 NVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMR 417

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++    TF SVL  C N      G Q+HC  +  G   +L++ + ++D+Y ++G   
Sbjct: 418 RADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMDADLFVANAMLDMYSKLGAID 477

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  +P ++  +WN ++          E + M  +MK  G+  + +SF   +  CS
Sbjct: 478 VAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACS 537

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               ++ GKQ+HS  IK   V  N  V ++L+D YS  G +  ++K    +    ++  N
Sbjct: 538 NIWAIETGKQIHSASIKYN-VCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPIN 596

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++     +   +A+ELF ++     +PS  +F   L+  +R  +   GKQ+H Y  K 
Sbjct: 597 ALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTRPVSSVIGKQVHCYTLKS 656

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVE 401
              +    +  +L  +Y KC ++E +  + E  P  ++L    + ++    +G    ++ 
Sbjct: 657 AILNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLV 716

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           MF  M    +  DE T ++ LKA S  A+   G  + +H   +KSGF S    + +LMD 
Sbjct: 717 MFWRMRSYDVRSDEATFTSVLKACSEMAALTDG--KEIHGLIVKSGFVSYETATSALMDM 774

Query: 462 YSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           YS+CG +  S ++F+++ +  N++ + S++ G+++NG   EAL + + M +  + PD VT
Sbjct: 775 YSKCGDVISSFEIFKELKNRQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQIKPDDVT 834

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
            L VL  C+H+G++ EG   F+SM  VYGI     HY+C+ID+LGR G L KA+E++ Q 
Sbjct: 835 LLGVLIACSHAGLISEGLHFFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQKAQEVIDQL 894

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D ++W++ L +C++H +E  G+  A  L+E+EP   + Y  +S+ ++  G +  + 
Sbjct: 895 PFRADGVIWATYLAACQMHKDEERGKVAAKKLVEMEPQSSSTYVFLSSLHAAAGNWVEAK 954

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
             RE    + + +  G S I V +
Sbjct: 955 VAREAMREKGVMKFPGCSWITVGN 978



 Score =  230 bits (586), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/546 (27%), Positives = 275/546 (50%), Gaps = 9/546 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I      G L  A+ L   +     V +N +I+   +     +   LY +M   G+  + 
Sbjct: 265 ISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTR 324

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           STF+S+LS  +N   + EG QIH   +  G   N+++GS L++LY++ G    A  +FD 
Sbjct: 325 STFASILSAAANMTAFDEGRQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDF 384

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
             E+N+  WN +L  F +    +E ++M+  M+   +E +  +F  ++  C     LD G
Sbjct: 385 STEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLG 444

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H   IK G +D ++FVANA++D YS  G++  AK  F  IPV D +SWN+++   A 
Sbjct: 445 RQVHCITIKNG-MDADLFVANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAH 503

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            +   +A+ +  RM+         SF   +N  S    +  GKQIH    K  ++  S H
Sbjct: 504 NEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIK--YNVCSNH 561

Query: 351 -VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V S+L D+Y K   +ESS  V       S+   N+L+T L+ +    +A+E+F  ++ +
Sbjct: 562 AVGSSLIDLYSKFGDVESSRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKD 621

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHI 468
           G      T ++ L   +   S+ +G  + +HC  +KS     + ++  SL+  Y +C  +
Sbjct: 622 GFKPSNFTFTSILSGCTRPVSSVIG--KQVHCYTLKSAILNQDTSLGISLVGIYLKCKLL 679

Query: 469 ELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           E ++++ E++P   N+V +T+ ++GY++NG   ++L M   M    +  D+ TF  VL  
Sbjct: 680 EDANKLLEEVPDHKNLVEWTATISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTSVLKA 739

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+    + +G+ + + +    G  +     S ++DM  + G +  + E+ ++     + M
Sbjct: 740 CSEMAALTDGKEI-HGLIVKSGFVSYETATSALMDMYSKCGDVISSFEIFKELKNRQNIM 798

Query: 588 MWSSLL 593
            W+S++
Sbjct: 799 PWNSMI 804



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 141/582 (24%), Positives = 269/582 (46%), Gaps = 46/582 (7%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D + K G ++ A+++FD +   D + +  +I+G  +    +QAL L+  M   G     
Sbjct: 199 VDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQ 258

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T  +++S  ++ G                                R+G    A  L   
Sbjct: 259 VTCVTIISTLASMG--------------------------------RLGD---ARTLLKR 283

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +   +   WN ++ ++ +     EV  +Y  MK +G+ P   +F  ++   +     DEG
Sbjct: 284 IRMTSTVAWNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEG 343

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H+  +K G +D N+FV ++L++ Y   G + +AKK FDF    +++ WN+I+  +  
Sbjct: 344 RQIHATAVKHG-LDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQ 402

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            +L  + +++F  M+         +FV  L       ++  G+Q+H    K G D   + 
Sbjct: 403 NELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQVHCITIKNGMD-ADLF 461

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +A+ DMY K   I+ + A+F   P +     N+L+  L H+    +A+ M   M   G
Sbjct: 462 VANAMLDMYSKLGAIDVAKALFSLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYG 521

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           I LDEV+ +T + A S   +   G  + +H  +IK    SN AV  SL+D YS+ G +E 
Sbjct: 522 IALDEVSFATAINACSNIWAIETG--KQIHSASIKYNVCSNHAVGSSLIDLYSKFGDVES 579

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           S +V   + + ++V   +++ G  +N    EA+++ + +++ G  P   TF  +L+GC  
Sbjct: 580 SRKVLAHVDASSIVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFTSILSGCTR 639

Query: 531 S-GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
               V   Q+   ++KS   ++ D      ++ +  +  +L+ A +LL++ P   + + W
Sbjct: 640 PVSSVIGKQVHCYTLKSAI-LNQDTSLGISLVGIYLKCKLLEDANKLLEEVPDHKNLVEW 698

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           ++      + G    G  V +++M      + V S  + F S
Sbjct: 699 TAT-----ISGYAQNGYSVQSLVMFWRMRSYDVRSDEATFTS 735



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 107/462 (23%), Positives = 221/462 (47%), Gaps = 40/462 (8%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           VLS CS  G    G Q+HC VL  GF  +++  + LVD+Y + G    A  +FD +   +
Sbjct: 163 VLSACSRLGALEHGRQVHCDVLKSGFCSSVFCQAGLVDMYAKCGEVDDARRMFDGIACPD 222

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
              W  M+  +  + R  + L ++++M+  G  P+ ++ C  +                 
Sbjct: 223 TICWTSMIAGYHRVGRYQQALALFSRMEKMGSVPDQVT-CVTI----------------- 264

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
                             +   ++ G L +A+     I +   ++WN++++ Y+   L  
Sbjct: 265 ------------------ISTLASMGRLGDARTLLKRIRMTSTVAWNAVIASYSQSGLDS 306

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +   L+  M+     P+  +F   L+ A+       G+QIH    K G D  +V V S+L
Sbjct: 307 EVFGLYKDMKKQGLMPTRSTFASILSAAANMTAFDEGRQIHATAVKHGLD-ANVFVGSSL 365

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            ++Y K   I  +  VF+ +  +++   N+++   + +   ++ ++MF +M    +  D+
Sbjct: 366 INLYVKHGCISDAKKVFDFSTEKNIVMWNAILYGFVQNELQEETIQMFQYMRRADLEADD 425

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T  + L A     S +LG  R +HC  IK+G ++++ V+ +++D YS+ G I+++  +F
Sbjct: 426 FTFVSVLGACINLYSLDLG--RQVHCITIKNGMDADLFVANAMLDMYSKLGAIDVAKALF 483

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
             IP  + V + +++ G + N    EA++ML+ M   G+  D+V+F   +  C++   ++
Sbjct: 484 SLIPVKDSVSWNALIVGLAHNEEEGEAINMLKRMKFYGIALDEVSFATAINACSNIWAIE 543

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            G+ + +S    Y + ++    S +ID+  + G ++ + ++L
Sbjct: 544 TGKQI-HSASIKYNVCSNHAVGSSLIDLYSKFGDVESSRKVL 584



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 135/543 (24%), Positives = 242/543 (44%), Gaps = 55/543 (10%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMR---MGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           +H R+L LG  L   +G  LVDLY R   +G + RAL      P  + A  + +L     
Sbjct: 75  LHARILRLGLPLRGRLGDALVDLYGRSGRVGYAWRALACCTGAPASSAAA-SSVLSCHAR 133

Query: 189 LSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
              P +VL  + +++   G  P+      ++  CS    L+ G+Q+H  V+K G+   ++
Sbjct: 134 SGSPRDVLDAFQRIRCSIGSTPDQFGIAVVLSACSRLGALEHGRQVHCDVLKSGFCS-SV 192

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           F    LVD Y+ CG + +A++ FD I   D I W S+++ Y        AL LF RM+  
Sbjct: 193 FCQAGLVDMYAKCGEVDDARRMFDGIACPDTICWTSMIAGYHRVGRYQQALALFSRMEKM 252

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   + V  ++  +  G +   + +   +                         + S
Sbjct: 253 GSVPDQVTCVTIISTLASMGRLGDARTLLKRIR------------------------MTS 288

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +VA             N+++ S   SG   +   ++  M  +G+     T ++ L A + 
Sbjct: 289 TVA------------WNAVIASYSQSGLDSEVFGLYKDMKKQGLMPTRSTFASILSAAAN 336

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             + + G  R +H  A+K G ++N+ V  SL++ Y + G I  + +VF+     N+V + 
Sbjct: 337 MTAFDEG--RQIHATAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWN 394

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           +I+ G+ +N +  E + M + M +  L  D  TF+ VL  C +   +  G+ V + +   
Sbjct: 395 AILYGFVQNELQEETIQMFQYMRRADLEADDFTFVSVLGACINLYSLDLGRQV-HCITIK 453

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
            G+DAD    + M+DM  + G +D A+ L    P   D + W++L+    +  NE  G  
Sbjct: 454 NGMDADLFVANAMLDMYSKLGAIDVAKALFSLIP-VKDSVSWNALI--VGLAHNEEEGEA 510

Query: 608 VANILMELE----PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIE 661
           + N+L  ++     +D   ++   N  S I   E   QI   ++   +  +  +G SLI+
Sbjct: 511 I-NMLKRMKFYGIALDEVSFATAINACSNIWAIETGKQIHSASIKYNVCSNHAVGSSLID 569

Query: 662 VNS 664
           + S
Sbjct: 570 LYS 572


>gi|357128220|ref|XP_003565772.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At5g13230, mitochondrial-like [Brachypodium distachyon]
          Length = 1206

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 183/619 (29%), Positives = 327/619 (52%), Gaps = 16/619 (2%)

Query: 41   QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            +L+++ +N  ++ + K G   SA ++FD +P R+MV++  L+ G       ++A  L+  
Sbjct: 462  RLDLFCANVLLNMYTKVGPFGSAHRVFDGLPERNMVSFVTLVQGHALRGEFEEASALFQR 521

Query: 101  MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
            +   G + +    ++VL +            +H     LG   N ++GS L+D Y   G 
Sbjct: 522  LRWEGHEVNQFVLTTVLKLVVAMDTLGLAWGVHACACKLGHDRNAFVGSALIDAYSMCGV 581

Query: 161  SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
               A  +FD +  ++   W  M+  + E   P+  L++++KM+    + N  +   ++R 
Sbjct: 582  VSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTLQIFSKMRVAVSKLNPFALTSVLRA 641

Query: 221  --CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
              C   ++L  GK +H+  +K  + D    V  AL+D Y+ CG++ +A+ +F+ +  DDV
Sbjct: 642  AVCLSSVVL--GKGIHACSVKTLY-DTERHVYGALLDMYAKCGNIEDARLAFEMVTNDDV 698

Query: 279  ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            I W+ ++S YA  +    A ELF RM      P+  S    L   +    +  GKQIH +
Sbjct: 699  ILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFSLSSVLQACANMPLLDLGKQIHNH 758

Query: 339  VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
              K+G +   + V +AL D+Y KC+ +ESS+ +F S    +    N+++     SG  + 
Sbjct: 759  AIKIGHE-SELFVGNALIDLYAKCSDMESSLEIFSSLRDVNEVSWNTIIVGYSKSGFGEA 817

Query: 399  AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCS 457
            A+ +F  M    +   +VT S+ L+A + +AS N +G    +HC   KS F S+  VS S
Sbjct: 818  ALSVFREMRAASVPSTQVTYSSVLRACASTASINHVGQ---VHCLIEKSTFNSDTIVSNS 874

Query: 458  LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
            L+D+Y++CG I  + ++FE +   ++V + +I++GY+ +G    A ++ ++M +  +  +
Sbjct: 875  LIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVHGQAAMAQELFDMMSKNSIKAN 934

Query: 518  KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
             +TF+ +L+ C  +G+V +G  +F+SM+  +GI+   +HY+C++ +LGRAG L+ A   +
Sbjct: 935  DITFVALLSVCGSTGLVSQGLSLFDSMRLDHGIEPSMEHYTCIVRLLGRAGRLNDALNFI 994

Query: 578  QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
               P     M+W +LL SC VH N  +GR  A  ++E+EP D   Y  +SN YS  G  +
Sbjct: 995  GDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVLEIEPQDETTYVLLSNMYSAAGSLD 1054

Query: 638  VSMQIRETALARKLTRDIG 656
                  + A  RK  R+IG
Sbjct: 1055 ------QVAFFRKSMRNIG 1067



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 119/521 (22%), Positives = 242/521 (46%), Gaps = 21/521 (4%)

Query: 36   CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL 95
            C+     N +  +  ID +   G ++ A+++FD +  +D V +  ++S   +   P+  L
Sbjct: 558  CKLGHDRNAFVGSALIDAYSMCGVVSDARRVFDGIVGKDAVAWTAMVSCYSENDCPENTL 617

Query: 96   YLYDEMVSHGIKESASTFSSVL--SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
             ++ +M     K +    +SVL  +VC ++    +GI   C V +L +    ++   L+D
Sbjct: 618  QIFSKMRVAVSKLNPFALTSVLRAAVCLSSVVLGKGIHA-CSVKTL-YDTERHVYGALLD 675

Query: 154  LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
            +Y + G    A   F+ +   ++  W+LM+  + + ++ ++   ++ +M    V PN  S
Sbjct: 676  MYAKCGNIEDARLAFEMVTNDDVILWSLMISRYAQCNQNEQAFELFIRMMRSSVSPNEFS 735

Query: 214  FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
               +++ C+   LLD GKQ+H+H IK+G  +  +FV NAL+D Y+ C  +  + + F  +
Sbjct: 736  LSSVLQACANMPLLDLGKQIHNHAIKIGH-ESELFVGNALIDLYAKCSDMESSLEIFSSL 794

Query: 274  PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
               + +SWN+I+  Y+       AL +F  M+      +  ++   L   + T ++    
Sbjct: 795  RDVNEVSWNTIIVGYSKSGFGEAALSVFREMRAASVPSTQVTYSSVLRACASTASINHVG 854

Query: 334  QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            Q+H  + K  F+  ++ V ++L D Y KC  I  +  +FE+     L   N++++     
Sbjct: 855  QVHCLIEKSTFNSDTI-VSNSLIDSYAKCGCIRDAREIFETLKECDLVSWNAIISGYAVH 913

Query: 394  GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS--CRLLHCCAIKSGFESN 451
            G    A E+F  M    I  +++T    +  LSV  S  L S    L     +  G E +
Sbjct: 914  GQAAMAQELFDMMSKNSIKANDITF---VALLSVCGSTGLVSQGLSLFDSMRLDHGIEPS 970

Query: 452  IAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNG---YSRNGMGR-EALDML 506
            +     ++    R G +  +      IPS P+ + + ++++    +    +GR  A  +L
Sbjct: 971  MEHYTCIVRLLGRAGRLNDALNFIGDIPSAPSAMVWRALLSSCIVHKNVELGRFSAEKVL 1030

Query: 507  EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
            E+  Q     D+ T++ +    + +G + +      SM+++
Sbjct: 1031 EIEPQ-----DETTYVLLSNMYSAAGSLDQVAFFRKSMRNI 1066


>gi|302793632|ref|XP_002978581.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
 gi|300153930|gb|EFJ20567.1| hypothetical protein SELMODRAFT_109016 [Selaginella moellendorffii]
          Length = 785

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 169/586 (28%), Positives = 320/586 (54%), Gaps = 7/586 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + + G L  A+ +F  M  RD++ +N LI+  G+  H ++A+ LY  M+  G K
Sbjct: 200 NALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCK 259

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               TF ++L++ +     TE   +H  ++  G  +N+ +G+ LV +Y +         L
Sbjct: 260 PDKVTFVALLTMSNGPEALTEVKLVHSHIVESGVSINIALGTALVAMYSKCESLEDTRWL 319

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+++P+RN+ +WN+M+ A+ +     + +++   M+ +GV+P+ ++   ++  C+    L
Sbjct: 320 FEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADL 379

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G+++H  + + G  + ++ + N+L++ Y  CG + +A+  FD I   +VISW ++++ 
Sbjct: 380 KLGRKVHGWIAE-GRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTA 438

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+  +    AL LF  + L   +P+  +F+E L+       +  G+ +H    + G D  
Sbjct: 439 YSRQNRQDMALLLFHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDI- 497

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM-TSLLHSGNIKDAVEMFGFM 406
            V + SAL  MYG+C  I  + A F+    R      S M  + +  G  ++ ++   FM
Sbjct: 498 DVSLGSALVAMYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFM 557

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA-VSCSLMDAYSRC 465
             +G+ +   T ++TL A   S  A+L   + +H    +  F++  A V+ SL+  Y +C
Sbjct: 558 QQQGLDMSPATFASTLSA--CSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKC 615

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G ++ + +VFE     + +C+ +I++GY+++   R+A+++   M Q G+ PD VTF+C+L
Sbjct: 616 GSLDCAREVFETSRRQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGVAPDPVTFVCIL 675

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+H G++ EG   + SM  + G++  + +Y+C+ID+LGRAG L +AEE +Q       
Sbjct: 676 SVCSHGGLLDEGVYAYASMVEL-GLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPA 734

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
               +SLL SC+ HG+   GRR A  +ME++P   + +  +S+ YS
Sbjct: 735 IETLTSLLSSCKSHGDVQRGRRAAEGIMEMDPRSSSAHVVLSSIYS 780



 Score =  223 bits (569), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 148/554 (26%), Positives = 283/554 (51%), Gaps = 18/554 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L +Y S  ++DD         AK++FD MPAR+++T+  +I G       +QA  ++  M
Sbjct: 103 LTMYGSCGSVDD---------AKRVFDAMPARNVITWTAMI-GAHAVTSLEQAFKVFRLM 152

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G K +  T+ +++  CS   F   GI +H R +     +   + + L+ +Y R G  
Sbjct: 153 ELEGFKSNFVTYVTLVQACSKPEFLEVGIILHMRSVESSSAMETPLCNALITMYGRCGRL 212

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F  + ER++  WN ++  + +    +E + +Y  M  EG +P+ ++F  ++   
Sbjct: 213 EDARAIFSSMVERDIIAWNALITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMS 272

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L E K +HSH+++ G V +NI +  ALV  YS C SL + +  F+ +P  +VISW
Sbjct: 273 NGPEALTEVKLVHSHIVESG-VSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISW 331

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N +V+ YA + L   A+++   MQL   +P   + V  LN  + + ++  G+++HG++ +
Sbjct: 332 NVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAE 391

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G     + + ++L +MYG+C  +E +  VF+    R++    +++T+         A+ 
Sbjct: 392 -GRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALL 450

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           +F  +   G+   + T  T L+AL     A  L   RL+H CA++SG + ++++  +L+ 
Sbjct: 451 LFHAIHLSGV---KPTCITFLEALDACVGAEALDKGRLVHSCAVQSGNDIDVSLGSALVA 507

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            Y RCG I  +   F+      N V +++++  + ++G  RE L  L  M Q+GL     
Sbjct: 508 MYGRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPA 567

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF   L+ C++   ++EG+ + + ++            + ++ M G+ G LD A E+  +
Sbjct: 568 TFASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVF-E 626

Query: 580 TPGGGDCMMWSSLL 593
           T    D + W++++
Sbjct: 627 TSRRQDTICWNAII 640



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 141/582 (24%), Positives = 266/582 (45%), Gaps = 45/582 (7%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++  N  I  + K   L+ A + F+ M  +++ T+  +I  C +      A+ L  +M+ 
Sbjct: 30  VFLGNHLIHTYGKCHSLDDAWETFERMSYKNVYTWTAIIGVCAQHHCHSLAIILLRQMLL 89

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G+K    T  + L+                                   +Y   G    
Sbjct: 90  EGVKPDNITLLAALT-----------------------------------MYGSCGSVDD 114

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD +P RN+ TW  M+ A   ++  ++  +++  M+ EG + N +++  +V+ CS 
Sbjct: 115 AKRVFDAMPARNVITWTAMIGAHA-VTSLEQAFKVFRLMELEGFKSNFVTYVTLVQACSK 173

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              L+ G  LH   ++     +   + NAL+  Y  CG L +A+  F  +   D+I+WN+
Sbjct: 174 PEFLEVGIILHMRSVESS-SAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNA 232

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +++ Y  +  + +A+ L+  M     +P   +FV  L  ++    +   K +H ++ + G
Sbjct: 233 LITEYGQHGHVEEAVLLYQLMLQEGCKPDKVTFVALLTMSNGPEALTEVKLVHSHIVESG 292

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
               ++ + +AL  MY KC  +E +  +FE  P R++   N ++T+    G  + AV++ 
Sbjct: 293 VSI-NIALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQIT 351

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
            +M  +G+  D VT    L   + SA   LG  R +H    +   E+++ +  SL++ Y 
Sbjct: 352 EYMQLDGVKPDNVTCVGLLNVCTGSADLKLG--RKVHGWIAEGRCEADLILWNSLLNMYG 409

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           RCG +E +  VF+ I   NV+ +T+++  YSR      AL +   +   G+ P  +TFL 
Sbjct: 410 RCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALLLFHAIHLSGVKPTCITFLE 469

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
            L  C  +  + +G+LV +S     G D D    S ++ M GR G +  A+     T   
Sbjct: 470 ALDACVGAEALDKGRLV-HSCAVQSGNDIDVSLGSALVAMYGRCGSIRDAKACFDDTEVR 528

Query: 584 GDCMMWSSLLRSCRVHGNEIIG----RRVANILMELEPVDFA 621
            + + WS+++ +   HG +  G    R +    +++ P  FA
Sbjct: 529 KNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATFA 570



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 123/500 (24%), Positives = 243/500 (48%), Gaps = 12/500 (2%)

Query: 18  PTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVT 77
           P   + V L  S +++S       +NI      +  + K   L   + LF++MP R++++
Sbjct: 275 PEALTEVKLVHSHIVES----GVSINIALGTALVAMYSKCESLEDTRWLFEKMPQRNVIS 330

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +N++++   K    ++A+ + + M   G+K    T   +L+VC+ +     G ++H  + 
Sbjct: 331 WNVMVTAYAKHGLGRKAVQITEYMQLDGVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIA 390

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR 197
                 +L + + L+++Y R G   +A  +FD + +RN+ +W  ML A+   +R D  L 
Sbjct: 391 EGRCEADLILWNSLLNMYGRCGEVEQAEMVFDGILQRNVISWTAMLTAYSRQNRQDMALL 450

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           +++ +   GV+P  ++F   +  C     LD+G+ +HS  ++ G  D+++ + +ALV  Y
Sbjct: 451 LFHAIHLSGVKPTCITFLEALDACVGAEALDKGRLVHSCAVQSG-NDIDVSLGSALVAMY 509

Query: 258 SACGSLIEAKKSFDFIPV-DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF 316
             CGS+ +AK  FD   V  + ++W+++++ +  +    + L+    MQ      S  +F
Sbjct: 510 GRCGSIRDAKACFDDTEVRKNHVTWSAMIAAFVQHGQDREGLQHLRFMQQQGLDMSPATF 569

Query: 317 VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
              L+  S   ++  GK+IH YV +  FD  +  V ++L  MYGKC  ++ +  VFE++ 
Sbjct: 570 ASTLSACSNLADLREGKRIHSYVRERRFDTEAATVTNSLVTMYGKCGSLDCAREVFETSR 629

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
            +   C N++++        +DAVE+F  M  EG+  D VT    L   S     + G  
Sbjct: 630 RQDTICWNAIISGYAQHSQTRDAVELFHRMQQEGVAPDPVTFVCILSVCSHGGLLDEGV- 688

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSR 495
              +   ++ G E        ++D   R G ++ + +  + + + P +   TS+++    
Sbjct: 689 -YAYASMVELGLEPTQDNYACVIDLLGRAGKLQEAEEFIQSLGTRPAIETLTSLLSSCKS 747

Query: 496 NG---MGREALDMLEVMIQR 512
           +G    GR A + +  M  R
Sbjct: 748 HGDVQRGRRAAEGIMEMDPR 767



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 102/422 (24%), Positives = 187/422 (44%), Gaps = 68/422 (16%)

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +++ C     LD  ++LHS +++   +D  +F+ N L+  Y  C SL +A ++F+ +   
Sbjct: 1   LLQACPKVKALDVARRLHSQIVRAS-LDNRVFLGNHLIHTYGKCHSLDDAWETFERMSYK 59

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +V +W +I+ + A +     A+ L  +M L   +P   + +  L      G+V   K++ 
Sbjct: 60  NVYTWTAIIGVCAQHHCHSLAIILLRQMLLEGVKPDNITLLAALTMYGSCGSVDDAKRVF 119

Query: 337 GYV--------TKLGFDHGSVHVQSA-----LTDMYG-KCNVIESSVAV----------- 371
             +        T +   H    ++ A     L ++ G K N +     V           
Sbjct: 120 DAMPARNVITWTAMIGAHAVTSLEQAFKVFRLMELEGFKSNFVTYVTLVQACSKPEFLEV 179

Query: 372 --------FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD--------------- 408
                    ES+       CN+L+T     G ++DA  +F  MV+               
Sbjct: 180 GIILHMRSVESSSAMETPLCNALITMYGRCGRLEDARAIFSSMVERDIIAWNALITEYGQ 239

Query: 409 ----------------EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
                           EG   D+VT    L  +S    A L   +L+H   ++SG   NI
Sbjct: 240 HGHVEEAVLLYQLMLQEGCKPDKVTF-VALLTMSNGPEA-LTEVKLVHSHIVESGVSINI 297

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           A+  +L+  YS+C  +E +  +FEK+P  NV+ +  ++  Y+++G+GR+A+ + E M   
Sbjct: 298 ALGTALVAMYSKCESLEDTRWLFEKMPQRNVISWNVMVTAYAKHGLGRKAVQITEYMQLD 357

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD VT + +L  C  S  +K G+ V   +      +AD   ++ +++M GR G +++
Sbjct: 358 GVKPDNVTCVGLLNVCTGSADLKLGRKVHGWIAEGR-CEADLILWNSLLNMYGRCGEVEQ 416

Query: 573 AE 574
           AE
Sbjct: 417 AE 418


>gi|222625907|gb|EEE60039.1| hypothetical protein OsJ_12814 [Oryza sativa Japonica Group]
          Length = 852

 Score =  293 bits (749), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 170/622 (27%), Positives = 322/622 (51%), Gaps = 4/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  I  +   G L  A+++FD M  RD V +N+++ G  K      A+ L+ +M 
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G + + +T +  LSV +       G+Q+H   +  G    + + + LV +Y +     
Sbjct: 240 ASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD 299

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               LF  +P  +L TWN M+    +    D+ L ++  M+  G+ P+ ++   ++   +
Sbjct: 300 DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALT 359

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                ++GK+LH ++++   V +++F+ +ALVD Y  C ++  A+  +D     DV+  +
Sbjct: 360 DLNGFNQGKELHGYIVR-NCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGS 418

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S Y    +  +A+++F  +     RP+  +    L   +    +  G+++H Y  K 
Sbjct: 419 TMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKN 478

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            ++ G  +V+SAL DMY KC  ++ S  +F     +     NS+++S   +G  ++A+ +
Sbjct: 479 AYE-GRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EG+    VT+S+ L A +   +   G  + +H   IK    +++    +L+D Y
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYG--KEIHGVVIKGPIRADLFAESALIDMY 595

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG++E +H+VFE +P  N V + SI+  Y   G+ +E++ +L  M + G   D VTFL
Sbjct: 596 GKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFL 655

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +++ C H+G V+EG  +F  M   Y I    +H++CM+D+  RAG LDKA EL+   P 
Sbjct: 656 ALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPF 715

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +CRVH N  +    +  L +L+P +   Y  +SN  +  G ++   ++
Sbjct: 716 KPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKV 775

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R      K+ +  G+S ++VN+
Sbjct: 776 RRLMKDTKVQKIPGYSWVDVNN 797



 Score =  233 bits (594), Expect = 2e-58,   Method: Compositional matrix adjust.
 Identities = 155/559 (27%), Positives = 279/559 (49%), Gaps = 13/559 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
            R +  +V +     A  +F  +P   A   + +N LI G       + AL  Y +M +H
Sbjct: 79  TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138

Query: 105 --GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                  + TF  V+  C+  G    G  +H    +LG   ++++GS L+ +Y   G   
Sbjct: 139 PSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLW 198

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD + ER+   WN+M+  + +       + ++  M+A G EPN  +    +   +
Sbjct: 199 DARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSA 258

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G QLH+  +K G ++  + VAN LV  Y+ C  L +  K F  +P DD+++WN
Sbjct: 259 TESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWN 317

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            ++S       +  AL LF  MQ    RP   + V  L   +       GK++HGY+ + 
Sbjct: 318 GMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVR- 376

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
              H  V + SAL D+Y KC  +  + +V++S+    +   +++++  + +G  ++AV+M
Sbjct: 377 NCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKM 436

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F +++++GI  + V +++ L A +  A+  LG  + LH  A+K+ +E    V  +LMD Y
Sbjct: 437 FRYLLEQGIRPNAVAIASVLPACASMAAMKLG--QELHSYALKNAYEGRCYVESALMDMY 494

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG ++LSH +F KI + + V + S+++ +++NG   EAL++   M   G+    VT  
Sbjct: 495 AKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTIS 554

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYG-IDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
            VL+ C     +  G+ +   +  + G I AD    S +IDM G+ G L+ A  + +  P
Sbjct: 555 SVLSACASLPAIYYGKEIHGVV--IKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMP 612

Query: 582 GGGDCMMWSSLLRSCRVHG 600
              + + W+S++ S   +G
Sbjct: 613 EKNE-VSWNSIIASYGAYG 630



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 200/415 (48%), Gaps = 5/415 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPN-PQLNIYSSNRTIDDFVKSGH 59
           M  + + P   T+ +L P  T +   +    L  Y   N   ++++  +  +D + K   
Sbjct: 339 MQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRA 398

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ ++D   A D+V  + +ISG       ++A+ ++  ++  GI+ +A   +SVL  
Sbjct: 399 VRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPA 458

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G ++H   L   +    Y+ S L+D+Y + G    +  +F ++  ++  TW
Sbjct: 459 CASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTW 518

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+ +F +   P+E L ++ +M  EGV+ + ++   ++  C+    +  GK++H  VIK
Sbjct: 519 NSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIK 578

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  ++F  +AL+D Y  CG+L  A + F+ +P  + +SWNSI++ Y  Y L+ +++ 
Sbjct: 579 -GPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVS 637

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L   MQ    +    +F+  ++  +  G V  G ++   +T+       +   + + D+Y
Sbjct: 638 LLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLY 697

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
            +   ++ ++ +    P +       +  +LLH+  +   VE+      E   LD
Sbjct: 698 SRAGKLDKAMELIVDMPFKPDA---GIWGALLHACRVHRNVELAEIASQELFKLD 749



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/331 (25%), Positives = 148/331 (44%), Gaps = 16/331 (4%)

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++RGC     L  G Q+H   +  G    +  +   LV  Y       +A   F  +P  
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 277 D---VISWNSIV---SIYADYDLIFDALELFFRM--QLCRKRPSIRSFVEFLNFASRTGN 328
                + WN ++   ++  DY     AL  + +M        P   +F   +   +  G 
Sbjct: 105 AAACALPWNWLIRGLTMAGDYR---SALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  G+ +H     LG D G + V SAL  MY    ++  +  VF+    R     N +M 
Sbjct: 162 IALGRLVHRTARTLGLD-GDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMD 220

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSG 447
             + +G++  AVE+FG M   G    E   +T    LSVSA+ ++L     LH  A+K G
Sbjct: 221 GYVKAGSVSSAVELFGDMRASGC---EPNFATLACFLSVSATESDLFFGVQLHTLAVKYG 277

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            ES +AV+ +L+  Y++C  ++   ++F  +P  ++V +  +++G  +NG   +AL +  
Sbjct: 278 LESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFC 337

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            M + G+ PD VT + +L          +G+
Sbjct: 338 DMQKSGIRPDSVTLVSLLPALTDLNGFNQGK 368



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 68/296 (22%), Positives = 123/296 (41%), Gaps = 17/296 (5%)

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
           R  +  L       ++  G Q+HG     G       +Q+ L  MY        +VAVF 
Sbjct: 40  RRLLAVLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFS 99

Query: 374 SAPGRSLECC---NSLMTSLLHSGNIKDAVEMFGFMVDEGIG--LDEVTLSTTLKALSVS 428
           S P  +  C    N L+  L  +G+ + A+  +  M         D  T    +K+ +  
Sbjct: 100 SLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAAL 159

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            +  LG  RL+H  A   G + ++ V  +L+  Y+  G +  + QVF+ +   + V +  
Sbjct: 160 GAIALG--RLVHRTARTLGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNV 217

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF----NSM 544
           +M+GY + G    A+++   M   G  P+  T  C L     S    E  L F    +++
Sbjct: 218 MMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFL-----SVSATESDLFFGVQLHTL 272

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
              YG++++    + ++ M  +   LD   +L    P   D + W+ ++  C  +G
Sbjct: 273 AVKYGLESEVAVANTLVSMYAKCKCLDDGWKLFGLMP-RDDLVTWNGMISGCVQNG 327


>gi|302766239|ref|XP_002966540.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
 gi|300165960|gb|EFJ32567.1| hypothetical protein SELMODRAFT_61257 [Selaginella moellendorffii]
          Length = 630

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 177/605 (29%), Positives = 323/605 (53%), Gaps = 17/605 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           +++  N  I  + K G  +S   A+ +FD+MP +D+V+++ +I+  G+  H ++A+ L+ 
Sbjct: 33  SVHLGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQ 92

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M    ++ +     S L+ CS A     G+ IH R+LS     ++++G+ L+++Y + G
Sbjct: 93  RM---DVEPNEMVIVSTLAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCG 149

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
              +A  +FD++P +++ +W  M+ AF ++    + L     M    V+PN ++F   + 
Sbjct: 150 AIEQARAVFDQIPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAIT 209

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS    LD G+++H+ VI LG +  +I + NALV  Y+   S  EA   F  +   + +
Sbjct: 210 ACSSREFLDRGRKIHAAVIDLG-LHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRV 268

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNS+++ +A       A+ LF  M L   +P   SF+  L+  S T  +   K+IH  +
Sbjct: 269 SWNSMIAAFAASAQSCAAMGLFHGMNLEGIKPDDVSFLGVLSACSSTRCLRSCKRIHSQL 328

Query: 340 TKLGFDHG--SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +L   H    + V+++L   Y KC  +E++  +F+  PG+++    +++T+    GN  
Sbjct: 329 -ELAAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGS 387

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A+E++  MV + I  D V L   + A S+    ++G  R LH     S F   I +  +
Sbjct: 388 KALELYDKMVGQSIQPDSVVLLNVIYAGSLVG--DVGLARKLHARVASSSFMLKIQIQNA 445

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVC-----FTSIMNGYSRNGMGREALDMLEVMIQR 512
           L++ Y+RCG +E + +VF+ I   N+V      ++S++ GY+ +G    A+ +   M   
Sbjct: 446 LINMYTRCGSLEEARRVFDGIERKNLVARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLE 505

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD VT++ +L  C+H+G++ + +  F SM   + + A   H+ CM+D+LGRAG + +
Sbjct: 506 GVQPDSVTYVSILNSCSHAGLLAQARHFFVSMVEDHCLAAWPDHWKCMVDVLGRAGFVGR 565

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           AE++++  P   D + W++LL  C+VHG+   G   A   + + P        +SN Y+E
Sbjct: 566 AEDVVRNMPFQPDVVAWNTLLGCCKVHGDARRGAVAARNAVGISPGFAGSTVLLSNMYAE 625

Query: 633 IGEFE 637
           IG  E
Sbjct: 626 IGRHE 630



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 121/480 (25%), Positives = 234/480 (48%), Gaps = 30/480 (6%)

Query: 38  PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL 97
           P+ + +++     ++ + K G +  A+ +FD++P +D+V++  +I+   +    +QAL  
Sbjct: 129 PDLRKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAFAQMGDCRQALET 188

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
            + M+   ++ +  TF + ++ CS+  F   G +IH  V+ LG   ++ I + LV +Y +
Sbjct: 189 LEGMIQARVQPNPVTFVAAITACSSREFLDRGRKIHAAVIDLGLHGDITIQNALVSMYAK 248

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
              +  AL +F  + +RN  +WN M+ AF   ++    + +++ M  EG++P+ +SF  +
Sbjct: 249 GSSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCAAMGLFHGMNLEGIKPDDVSFLGV 308

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDV--NIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           +  CS    L   K++HS  ++L  V    ++ V N+LV  Y+ CG L  A++ F  IP 
Sbjct: 309 LSACSSTRCLRSCKRIHSQ-LELAAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPG 367

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +V+SW ++++ Y  +     ALEL+ +M     +P     +  +   S  G+V   +++
Sbjct: 368 KNVVSWTAMLTAYTFHGNGSKALELYDKMVGQSIQPDSVVLLNVIYAGSLVGDVGLARKL 427

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC-----CNSLMTSL 390
           H  V    F    + +Q+AL +MY +C  +E +  VF+    ++L        +SL+   
Sbjct: 428 HARVASSSF-MLKIQIQNALINMYTRCGSLEEARRVFDGIERKNLVARDTVTWSSLVAGY 486

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL-------HCCA 443
            H G+ + A+ ++  M  EG+  D VT  + L   S S +  L   R         HC A
Sbjct: 487 AHHGHAEYAILLYRDMHLEGVQPDSVTYVSILN--SCSHAGLLAQARHFFVSMVEDHCLA 544

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM-----NGYSRNG 497
                         ++D   R G +  +  V   +P  P+VV + +++     +G +R G
Sbjct: 545 AWPDHWK------CMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNTLLGCCKVHGDARRG 598



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/392 (25%), Positives = 189/392 (48%), Gaps = 11/392 (2%)

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG---SLIEAKKSF 270
           +  ++R C I   L +G+++H H++  G    ++ + N L+  Y  CG   SL +A+  F
Sbjct: 1   YASLLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVF 60

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  DV+SW+ I++ Y       +A+ LF RM +    P+    V  L   S   ++ 
Sbjct: 61  DQMPKKDVVSWSCIIAAYGQAGHCREAINLFQRMDV---EPNEMVIVSTLAACSGAKDLA 117

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G  IH  +        SV V +AL +MY KC  IE + AVF+  P + +    +++T+ 
Sbjct: 118 LGMAIHARILSPDL-RKSVFVGTALLNMYAKCGAIEQARAVFDQIPHKDVVSWTAMITAF 176

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
              G+ + A+E    M+   +  + VT    + A S     + G  R +H   I  G   
Sbjct: 177 AQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFLDRG--RKIHAAVIDLGLHG 234

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           +I +  +L+  Y++    E +  VF+++   N V + S++  ++ +     A+ +   M 
Sbjct: 235 DITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCAAMGLFHGMN 294

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK-SVYGIDADRQHYSCMIDMLGRAGI 569
             G+ PD V+FL VL+ C+ +  ++  + + + ++ +      D    + ++    + G 
Sbjct: 295 LEGIKPDDVSFLGVLSACSSTRCLRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGD 354

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           L+ AE + Q+ P G + + W+++L +   HGN
Sbjct: 355 LEAAERIFQRIP-GKNVVSWTAMLTAYTFHGN 385


>gi|359472776|ref|XP_002275546.2| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 896

 Score =  292 bits (748), Expect = 3e-76,   Method: Compositional matrix adjust.
 Identities = 195/642 (30%), Positives = 328/642 (51%), Gaps = 31/642 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ++ + K G +    K+FD +  RD V++N  I+   +F   +QAL  +  M    +
Sbjct: 131 ANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRFEKWEQALEAFRAMQMENM 190

Query: 107 KESASTFSSVLSVCSNAGFYTE---GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           + S+ T  SV   CSN G       G Q+H   L +G     +  + L+ +Y ++G    
Sbjct: 191 ELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG-DQKTFTNNALMAMYAKLGRVDD 249

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           +  LF+   +R++ +WN M+ +F +  R  E L  +  M  EGVE +G++   ++  CS 
Sbjct: 250 SKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLEGVELDGVTIASVLPACSH 309

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              LD GK++H++V++   +  N FV +ALVD Y  C  +   ++ FD I    +  WN+
Sbjct: 310 LERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVESGRRVFDHILGRRIELWNA 369

Query: 284 IVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++S YA   L   AL LF  M ++    P+  +    +            + IHGY  KL
Sbjct: 370 MISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACVHCEAFSNKESIHGYAVKL 429

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF     +VQ+AL DMY +   ++ S  +F+S   R     N+++T  + SG   +A+ +
Sbjct: 430 GFKEDR-YVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWNTMITGYVLSGRYSNALVL 488

Query: 403 FGFM-----------------VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
              M                        + +TL T L     +A A +   + +H  AI+
Sbjct: 489 LHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPG--CAALAAIAKGKEIHAYAIR 546

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           +   S+I V  +L+D Y++CG + LS +VF ++P+ NV+ +  ++     +G G EAL++
Sbjct: 547 NMLASDITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITWNVLIMACGMHGKGEEALEL 606

Query: 506 LEVMIQ---RG--LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
            + M+    RG    P++VTF+ V A C+HSG++ EG  +F  MK  +G++    HY+C+
Sbjct: 607 FKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEGLNLFYRMKHDHGVEPTSDHYACV 666

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           +D+LGRAG L++A EL+   P   D +  WSSLL +CR+H N  +G   A  L+ LEP  
Sbjct: 667 VDLLGRAGQLEEAYELVNTMPAEFDKVGAWSSLLGACRIHQNVELGEVAAKNLLHLEPNV 726

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            + Y  +SN YS  G +  +M++R+      + ++ G S IE
Sbjct: 727 ASHYVLLSNIYSSAGLWNKAMEVRKNMRQMGVKKEPGCSWIE 768



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 142/558 (25%), Positives = 261/558 (46%), Gaps = 40/558 (7%)

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P+R   ++   +    +    ++A+  Y EM   G +     F +VL   S       G 
Sbjct: 53  PSRSTASWVDALRSRTRSNDFREAISTYIEMTVSGARPDNFAFPAVLKAVSGLQDLKTGE 112

Query: 131 QIHCRVLSLGFGLN-LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           QIH   +  G+G + + + + LV++Y + G       +FD + +R+  +WN  + A C  
Sbjct: 113 QIHAAAVKFGYGSSSVTVANTLVNMYGKCGGIGDVCKVFDRITDRDQVSWNSFIAALCRF 172

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGML--LDEGKQLHSHVIKLGWVDVN 246
            + ++ L  +  M+ E +E +  +   +   CS +G++  L  GKQLH + +++G  D  
Sbjct: 173 EKWEQALEAFRAMQMENMELSSFTLVSVALACSNLGVMHGLRLGKQLHGYSLRVG--DQK 230

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
            F  NAL+  Y+  G + ++K  F+     D++SWN+++S ++  D   +AL  F  M L
Sbjct: 231 TFTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVL 290

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
                   +    L   S    +  GK+IH YV +      +  V SAL DMY  C  +E
Sbjct: 291 EGVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVE 350

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKA- 424
           S   VF+   GR +E  N++++    +G  + A+ +F  M+   G+  +  T+++ + A 
Sbjct: 351 SGRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPAC 410

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           +   A +N  S   +H  A+K GF+ +  V  +LMD YSR G +++S  +F+ +   + V
Sbjct: 411 VHCEAFSNKES---IHGYAVKLGFKEDRYVQNALMDMYSRMGKMDISETIFDSMEVRDRV 467

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQR------------------GLIPDKVTFLCVLA 526
            + +++ GY  +G    AL +L  M QR                     P+ +T + VL 
Sbjct: 468 SWNTMITGYVLSGRYSNALVLLHEM-QRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLP 526

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGID----ADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
           GC     + +G+ +       Y I     +D    S ++DM  + G L+ +  +  + P 
Sbjct: 527 GCAALAAIAKGKEIH-----AYAIRNMLASDITVGSALVDMYAKCGCLNLSRRVFNEMP- 580

Query: 583 GGDCMMWSSLLRSCRVHG 600
             + + W+ L+ +C +HG
Sbjct: 581 NKNVITWNVLIMACGMHG 598



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 123/462 (26%), Positives = 211/462 (45%), Gaps = 31/462 (6%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +++N  +  + K G ++ +K LF+    RDMV++N +IS   +     +AL  +  MV  
Sbjct: 232 FTNNALMAMYAKLGRVDDSKALFESFVDRDMVSWNTMISSFSQSDRFSEALAFFRLMVLE 291

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVR 163
           G++    T +SVL  CS+      G +IH  VL     + N ++GS LVD+Y        
Sbjct: 292 GVELDGVTIASVLPACSHLERLDVGKEIHAYVLRNNDLIENSFVGSALVDMYCNCRQVES 351

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCS 222
              +FD +  R +  WN M+  +      ++ L ++ +M K  G+ PN  +   ++  C 
Sbjct: 352 GRRVFDHILGRRIELWNAMISGYARNGLDEKALILFIEMIKVAGLLPNTTTMASVMPACV 411

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                   + +H + +KLG+ + + +V NAL+D YS  G +  ++  FD + V D +SWN
Sbjct: 412 HCEAFSNKESIHGYAVKLGFKE-DRYVQNALMDMYSRMGKMDISETIFDSMEVRDRVSWN 470

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRK-----------------RPSIRSFVEFLNFASR 325
           ++++ Y       +AL L   MQ                     +P+  + +  L   + 
Sbjct: 471 TMITGYVLSGRYSNALVLLHEMQRMENTKDVKKDDNDDEKGGPYKPNAITLMTVLPGCAA 530

Query: 326 TGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
              +  GK+IH Y  +  L  D   + V SAL DMY KC  +  S  VF   P +++   
Sbjct: 531 LAAIAKGKEIHAYAIRNMLASD---ITVGSALVDMYAKCGCLNLSRRVFNEMPNKNVITW 587

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDE-GIG----LDEVTLSTTLKALSVSASANLGSCRL 438
           N L+ +    G  ++A+E+F  MV E G G     +EVT  T   A S S   + G   L
Sbjct: 588 NVLIMACGMHGKGEEALELFKNMVAEAGRGGEAKPNEVTFITVFAACSHSGLISEG-LNL 646

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            +      G E        ++D   R G +E ++++   +P+
Sbjct: 647 FYRMKHDHGVEPTSDHYACVVDLLGRAGQLEEAYELVNTMPA 688


>gi|302822082|ref|XP_002992701.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
 gi|300139547|gb|EFJ06286.1| hypothetical protein SELMODRAFT_135788 [Selaginella moellendorffii]
          Length = 941

 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 179/631 (28%), Positives = 317/631 (50%), Gaps = 23/631 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDD-----FVKSGHLNS 62
           P   T+T++   C ++        + +     P    Y+ N T+ +     + K   +  
Sbjct: 309 PNATTLTSVLRACATVGAHEQGRRIHALVLAGP----YTQNTTVLNAAASLYAKCSRVAD 364

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS- 121
           A ++F  +P +D V++N ++S   K    + A++L  +M   G      TF ++L  CS 
Sbjct: 365 ASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFITILYSCSQ 424

Query: 122 --------NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
                   N+   T+G Q+H +++S G   + Y+G+ LV +Y R G    A   F  + +
Sbjct: 425 SALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFQGIHQ 484

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           RN+ +W +++    +     E L +   M  EG E N ++F  ++  CS+   L  GK +
Sbjct: 485 RNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANKITFISLLGACSVTGDLSLGKTI 544

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  +   G ++ +I  +NAL++ Y+ C SL EA+  F+ +   DV+SW  I+S YA    
Sbjct: 545 HERIRTKG-LESDIITSNALLNMYTTCESLDEARLVFERMVFRDVVSWTIIISAYAHAGY 603

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +AL+L+ RM+    RP   + +  L   +    +  GK IH  +   G +   V V +
Sbjct: 604 PLEALQLYRRMEQEFSRPDAVTLISVLEACASLRALVEGKAIHERIVASGVE-TDVFVGT 662

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           A+   YGKC  +E +  VF+    + + C N+++ +   +   + A  ++  MV+  +  
Sbjct: 663 AVVSFYGKCEAVEDARQVFDRILDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMPP 722

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC-GHIELSH 472
           ++VTL T L + S +     GS   LH  A   G+ S+ +V  +L++ Y++C G++E + 
Sbjct: 723 NDVTLITLLDSCSSTCKMERGSS--LHREAAARGYLSHTSVVNALINMYAKCCGNLEAAQ 780

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
             FE + S NVV ++SI+  Y+RNG    A ++   M Q G++P+ VTF  VL  C+H+G
Sbjct: 781 TAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLPNIVTFTSVLHACSHAG 840

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  EG   F SM+  + ++   +HY CM+++L ++G + +A   +   P   D   W SL
Sbjct: 841 LADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASFMSAMPVQPDASAWRSL 900

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVY 623
           L +C VH ++  G   A  L++ EP + A Y
Sbjct: 901 LGACEVHTDKEYGALAAKQLLDAEPRNSAAY 931



 Score =  201 bits (512), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 129/484 (26%), Positives = 238/484 (49%), Gaps = 18/484 (3%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G+     T  + +S C+  G   +G QIH R+LS G G ++ + + LV +Y + G    A
Sbjct: 5   GVPGDEITLLNAVSACAALGDSLQGKQIHARILSSGLGASVLLSNSLVYMYGKCGSVEEA 64

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            + FD +PER+L +WN M+  + +     + +++Y   + EG +P+ ++F  ++  C   
Sbjct: 65  RNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGTKPDEVTFASLLNACFAS 124

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L  G+ LH H +   +V   I V N L+  YS CGSL +A   F++    DV +W ++
Sbjct: 125 GDLKFGRMLHEHFLGTSFVSDQI-VCNGLISMYSDCGSLDDATAVFEWSFRPDVCTWTTV 183

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y  +  +  A   + +M     R +  +F+  L+  S    +  GK +H      G 
Sbjct: 184 IAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEVLETGKHVHRLALGSGL 243

Query: 345 DHGSVHVQSALTDMYGKCNV-IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           D  S+ ++++L  MYGKC+   + +  VF      S+   ++ + +    G   +A++ F
Sbjct: 244 DF-SLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFIAAY---GQHWEAIKTF 299

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M  EG+  +  TL++ L+A +   +   G  R +H   +   +  N  V  +    Y+
Sbjct: 300 ELMNLEGVKPNATTLTSVLRACATVGAHEQG--RRIHALVLAGPYTQNTTVLNAAASLYA 357

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +C  +  + +VF  IP  + V + +I++ Y++ G+ R+A+ +   M   G +PD +TF+ 
Sbjct: 358 KCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQMQVEGFVPDDITFIT 417

Query: 524 VLAGCNHSGMVKE---------GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           +L  C+ S ++K+         G+ V + M S  G+D D    + ++ M GR G LD A 
Sbjct: 418 ILYSCSQSALLKQYGNSKSLTDGRQVHSQMIS-NGLDGDTYLGNLLVQMYGRCGSLDDAR 476

Query: 575 ELLQ 578
              Q
Sbjct: 477 AAFQ 480



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 135/541 (24%), Positives = 261/541 (48%), Gaps = 14/541 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  +  + K G +  A+  FD MP RD++++N +I+   +    KQA+ LY      G 
Sbjct: 48  SNSLVYMYGKCGSVEEARNAFDRMPERDLISWNAMITVYAQHECGKQAIQLYAYSRLEGT 107

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K    TF+S+L+ C  +G    G  +H   L   F  +  + + L+ +Y   G    A  
Sbjct: 108 KPDEVTFASLLNACFASGDLKFGRMLHEHFLGTSFVSDQIVCNGLISMYSDCGSLDDATA 167

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F+     ++ TW  ++ A+    + +     ++KM  EG+  N ++F  ++  CS   +
Sbjct: 168 VFEWSFRPDVCTWTTVIAAYTRHGKLECAFATWSKMHQEGLRSNEITFLTVLDTCSSLEV 227

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI-EAKKSFDFIPVDDVISWNSIV 285
           L+ GK +H   +  G +D ++ + N+L+  Y  C     EA++ F  I    VISW++ +
Sbjct: 228 LETGKHVHRLALGSG-LDFSLRMENSLISMYGKCSRHPDEAREVFLRISRPSVISWSAFI 286

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           + Y  +   ++A++ F  M L   +P+  +    L   +  G    G++IH  V    + 
Sbjct: 287 AAYGQH---WEAIKTFELMNLEGVKPNATTLTSVLRACATVGAHEQGRRIHALVLAGPYT 343

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
             +  V +A   +Y KC+ +  +  VF S P +     N+++++    G  +DA+ +   
Sbjct: 344 QNTT-VLNAAASLYAKCSRVADASRVFSSIPCKDAVSWNAIVSAYAKQGLFRDAIFLSRQ 402

Query: 406 MVDEGIGLDEVTLSTTLKALSVSA-------SANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           M  EG   D++T  T L + S SA       S +L   R +H   I +G + +  +   L
Sbjct: 403 MQVEGFVPDDITFITILYSCSQSALLKQYGNSKSLTDGRQVHSQMISNGLDGDTYLGNLL 462

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y RCG ++ +   F+ I   NV  +T +++   +NG   E L++L+ M   G   +K
Sbjct: 463 VQMYGRCGSLDDARAAFQGIHQRNVFSWTILISLLVQNGEASEGLELLKSMDLEGTEANK 522

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TF+ +L  C+ +G +  G+ +   +++  G+++D    + +++M      LD+A  + +
Sbjct: 523 ITFISLLGACSVTGDLSLGKTIHERIRT-KGLESDIITSNALLNMYTTCESLDEARLVFE 581

Query: 579 Q 579
           +
Sbjct: 582 R 582


>gi|12957718|gb|AAK09236.1|AC084320_23 hypothetical protein [Oryza sativa Japonica Group]
 gi|108711388|gb|ABF99183.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 843

 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 170/622 (27%), Positives = 322/622 (51%), Gaps = 4/622 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  I  +   G L  A+++FD M  RD V +N+++ G  K      A+ L+ +M 
Sbjct: 180 DMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMR 239

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G + + +T +  LSV +       G+Q+H   +  G    + + + LV +Y +     
Sbjct: 240 ASGCEPNFATLACFLSVSATESDLFFGVQLHTLAVKYGLESEVAVANTLVSMYAKCKCLD 299

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               LF  +P  +L TWN M+    +    D+ L ++  M+  G+ P+ ++   ++   +
Sbjct: 300 DGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALT 359

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                ++GK+LH ++++   V +++F+ +ALVD Y  C ++  A+  +D     DV+  +
Sbjct: 360 DLNGFNQGKELHGYIVR-NCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGS 418

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S Y    +  +A+++F  +     RP+  +    L   +    +  G+++H Y  K 
Sbjct: 419 TMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPACASMAAMKLGQELHSYALKN 478

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            ++ G  +V+SAL DMY KC  ++ S  +F     +     NS+++S   +G  ++A+ +
Sbjct: 479 AYE-GRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNL 537

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M  EG+    VT+S+ L A +   +   G  + +H   IK    +++    +L+D Y
Sbjct: 538 FREMCMEGVKYSNVTISSVLSACASLPAIYYG--KEIHGVVIKGPIRADLFAESALIDMY 595

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG++E +H+VFE +P  N V + SI+  Y   G+ +E++ +L  M + G   D VTFL
Sbjct: 596 GKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVSLLRHMQEEGFKADHVTFL 655

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +++ C H+G V+EG  +F  M   Y I    +H++CM+D+  RAG LDKA EL+   P 
Sbjct: 656 ALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLYSRAGKLDKAMELIVDMPF 715

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +CRVH N  +    +  L +L+P +   Y  +SN  +  G ++   ++
Sbjct: 716 KPDAGIWGALLHACRVHRNVELAEIASQELFKLDPHNSGYYVLMSNINAVAGRWDGVSKV 775

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R      K+ +  G+S ++VN+
Sbjct: 776 RRLMKDTKVQKIPGYSWVDVNN 797



 Score =  233 bits (594), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 155/559 (27%), Positives = 279/559 (49%), Gaps = 13/559 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
            R +  +V +     A  +F  +P   A   + +N LI G       + AL  Y +M +H
Sbjct: 79  TRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLIRGLTMAGDYRSALLFYLKMWAH 138

Query: 105 --GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                  + TF  V+  C+  G    G  +H    +LG   ++++GS L+ +Y   G   
Sbjct: 139 PSAPLPDSHTFPYVVKSCAALGAIALGRLVHRTARTLGLDGDMFVGSALIKMYANGGLLW 198

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD + ER+   WN+M+  + +       + ++  M+A G EPN  +    +   +
Sbjct: 199 DARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVELFGDMRASGCEPNFATLACFLSVSA 258

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G QLH+  +K G ++  + VAN LV  Y+ C  L +  K F  +P DD+++WN
Sbjct: 259 TESDLFFGVQLHTLAVKYG-LESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWN 317

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            ++S       +  AL LF  MQ    RP   + V  L   +       GK++HGY+ + 
Sbjct: 318 GMISGCVQNGFVDQALLLFCDMQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVR- 376

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
              H  V + SAL D+Y KC  +  + +V++S+    +   +++++  + +G  ++AV+M
Sbjct: 377 NCVHMDVFLVSALVDIYFKCRAVRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKM 436

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F +++++GI  + V +++ L A +  A+  LG  + LH  A+K+ +E    V  +LMD Y
Sbjct: 437 FRYLLEQGIRPNAVAIASVLPACASMAAMKLG--QELHSYALKNAYEGRCYVESALMDMY 494

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG ++LSH +F KI + + V + S+++ +++NG   EAL++   M   G+    VT  
Sbjct: 495 AKCGRLDLSHYIFSKISAKDEVTWNSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTIS 554

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYG-IDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
            VL+ C     +  G+ +   +  + G I AD    S +IDM G+ G L+ A  + +  P
Sbjct: 555 SVLSACASLPAIYYGKEIHGVV--IKGPIRADLFAESALIDMYGKCGNLEWAHRVFESMP 612

Query: 582 GGGDCMMWSSLLRSCRVHG 600
              + + W+S++ S   +G
Sbjct: 613 EKNE-VSWNSIIASYGAYG 630



 Score =  137 bits (346), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 200/415 (48%), Gaps = 5/415 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPN-PQLNIYSSNRTIDDFVKSGH 59
           M  + + P   T+ +L P  T +   +    L  Y   N   ++++  +  +D + K   
Sbjct: 339 MQKSGIRPDSVTLVSLLPALTDLNGFNQGKELHGYIVRNCVHMDVFLVSALVDIYFKCRA 398

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ ++D   A D+V  + +ISG       ++A+ ++  ++  GI+ +A   +SVL  
Sbjct: 399 VRMAQSVYDSSKAIDVVIGSTMISGYVLNGMSQEAVKMFRYLLEQGIRPNAVAIASVLPA 458

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G ++H   L   +    Y+ S L+D+Y + G    +  +F ++  ++  TW
Sbjct: 459 CASMAAMKLGQELHSYALKNAYEGRCYVESALMDMYAKCGRLDLSHYIFSKISAKDEVTW 518

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+ +F +   P+E L ++ +M  EGV+ + ++   ++  C+    +  GK++H  VIK
Sbjct: 519 NSMISSFAQNGEPEEALNLFREMCMEGVKYSNVTISSVLSACASLPAIYYGKEIHGVVIK 578

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  ++F  +AL+D Y  CG+L  A + F+ +P  + +SWNSI++ Y  Y L+ +++ 
Sbjct: 579 -GPIRADLFAESALIDMYGKCGNLEWAHRVFESMPEKNEVSWNSIIASYGAYGLVKESVS 637

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L   MQ    +    +F+  ++  +  G V  G ++   +T+       +   + + D+Y
Sbjct: 638 LLRHMQEEGFKADHVTFLALVSACAHAGQVQEGLRLFRCMTEEYQIAPRMEHFACMVDLY 697

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
            +   ++ ++ +    P    +    +  +LLH+  +   VE+      E   LD
Sbjct: 698 SRAGKLDKAMELIVDMP---FKPDAGIWGALLHACRVHRNVELAEIASQELFKLD 749



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 84/318 (26%), Positives = 145/318 (45%), Gaps = 16/318 (5%)

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++RGC     L  G Q+H   +  G    +  +   LV  Y       +A   F  +P  
Sbjct: 45  VLRGCVSPSHLSLGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRG 104

Query: 277 D---VISWNSIV---SIYADYDLIFDALELFFRM--QLCRKRPSIRSFVEFLNFASRTGN 328
                + WN ++   ++  DY     AL  + +M        P   +F   +   +  G 
Sbjct: 105 AAACALPWNWLIRGLTMAGDYR---SALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGA 161

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  G+ +H     LG D G + V SAL  MY    ++  +  VF+    R     N +M 
Sbjct: 162 IALGRLVHRTARTLGLD-GDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMD 220

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSG 447
             + +G++  AVE+FG M   G    E   +T    LSVSA+ ++L     LH  A+K G
Sbjct: 221 GYVKAGSVSSAVELFGDMRASGC---EPNFATLACFLSVSATESDLFFGVQLHTLAVKYG 277

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            ES +AV+ +L+  Y++C  ++   ++F  +P  ++V +  +++G  +NG   +AL +  
Sbjct: 278 LESEVAVANTLVSMYAKCKCLDDGWKLFGLMPRDDLVTWNGMISGCVQNGFVDQALLLFC 337

Query: 508 VMIQRGLIPDKVTFLCVL 525
            M + G+ PD VT + +L
Sbjct: 338 DMQKSGIRPDSVTLVSLL 355



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 66/279 (23%), Positives = 118/279 (42%), Gaps = 17/279 (6%)

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC---NSLM 387
            G Q+HG     G       +Q+ L  MY        +VAVF S P  +  C    N L+
Sbjct: 57  LGLQVHGRAVTAGLHATDTALQTRLVGMYVLARRFRDAVAVFSSLPRGAAACALPWNWLI 116

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIG--LDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
             L  +G+ + A+  +  M         D  T    +K+ +   +  LG  RL+H  A  
Sbjct: 117 RGLTMAGDYRSALLFYLKMWAHPSAPLPDSHTFPYVVKSCAALGAIALG--RLVHRTART 174

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            G + ++ V  +L+  Y+  G +  + QVF+ +   + V +  +M+GY + G    A+++
Sbjct: 175 LGLDGDMFVGSALIKMYANGGLLWDARQVFDGMAERDCVLWNVMMDGYVKAGSVSSAVEL 234

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF----NSMKSVYGIDADRQHYSCMI 561
              M   G  P+  T  C L     S    E  L F    +++   YG++++    + ++
Sbjct: 235 FGDMRASGCEPNFATLACFL-----SVSATESDLFFGVQLHTLAVKYGLESEVAVANTLV 289

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            M  +   LD   +L    P   D + W+ ++  C  +G
Sbjct: 290 SMYAKCKCLDDGWKLFGLMP-RDDLVTWNGMISGCVQNG 327


>gi|224080660|ref|XP_002306200.1| predicted protein [Populus trichocarpa]
 gi|222849164|gb|EEE86711.1| predicted protein [Populus trichocarpa]
          Length = 784

 Score =  292 bits (748), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 178/647 (27%), Positives = 341/647 (52%), Gaps = 32/647 (4%)

Query: 17  APTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMV 76
           A + TS  PL+         +PN  LNI    R +  FV+SG + +A  +F++M   D  
Sbjct: 44  AQSKTSFKPLA---------RPN-DLNI---TRDLCGFVESGLMGNALDMFEKMNHSDTF 90

Query: 77  TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRV 136
            +N++I G       ++A+  Y  M   GI+    TF  V+  C        G ++H ++
Sbjct: 91  IWNVIIRGYTNNGLFQEAIDFYYRMECEGIRSDNFTFPFVIKACGELLALMVGQKVHGKL 150

Query: 137 LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
           + +GF L++Y+ + L+D+Y+++G    A  +FDE+P R+L +WN M+  +         L
Sbjct: 151 IKIGFDLDVYVCNFLIDMYLKIGFIELAEKVFDEMPVRDLVSWNSMVSGYQIDGDGLSSL 210

Query: 197 RMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256
             + +M   G + +       +  CSI   L  G ++H  VI+   ++++I V  +L+D 
Sbjct: 211 MCFKEMLRLGNKADRFGMISALGACSIEHCLRSGMEIHCQVIR-SELELDIMVQTSLIDM 269

Query: 257 YSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF 316
           Y  CG +  A++ F+ I   ++++WN+++    + D +                P + + 
Sbjct: 270 YGKCGKVDYAERVFNRIYSKNIVAWNAMIGGMQEDDKVI---------------PDVITM 314

Query: 317 VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           +  L   S++G +  GK IHG+  +  F    V +++AL DMYGKC  ++ +  VF    
Sbjct: 315 INLLPSCSQSGALLEGKSIHGFAIRKMFLPYLV-LETALVDMYGKCGELKLAEHVFNQMN 373

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
            +++   N+++ + + +   K+A++MF  +++E +  D +T+++ L A++  AS + G  
Sbjct: 374 EKNMVSWNTMVAAYVQNEQYKEALKMFQHILNEPLKPDAITIASVLPAVAELASRSEG-- 431

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           + +H   +K G  SN  +S +++  Y++CG ++ + + F+ +   +VV + +++  Y+ +
Sbjct: 432 KQIHSYIMKLGLGSNTFISNAIVYMYAKCGDLQTAREFFDGMVCKDVVSWNTMIMAYAIH 491

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
           G GR ++     M  +G  P+  TF+ +L  C+ SG++ EG   FNSMK  YGID   +H
Sbjct: 492 GFGRTSIQFFSEMRGKGFKPNGSTFVSLLTACSISGLIDEGWGFFNSMKVEYGIDPGIEH 551

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           Y CM+D+LGR G LD+A+  +++ P      +W SLL + R H + ++    A  ++ L+
Sbjct: 552 YGCMLDLLGRNGNLDEAKCFIEEMPLVPTARIWGSLLAASRNHNDVVLAELAARHILSLK 611

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             +   Y  +SN Y+E G +E   +I+     + L + +G S++++N
Sbjct: 612 HDNTGCYVLLSNMYAEAGRWEDVDRIKYLMKEQGLVKTVGCSMVDIN 658


>gi|356528338|ref|XP_003532761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Glycine max]
          Length = 785

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 176/609 (28%), Positives = 328/609 (53%), Gaps = 5/609 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +V  G L   +++FD +    +  +NLL+S   K  + ++++ L+++M   GI+  + TF
Sbjct: 102 YVNCGDLVKGRRIFDGILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTF 161

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           + VL   + +    E  ++H  VL LGFG    + + L+  Y + G    A  LFDEL +
Sbjct: 162 TCVLKGFAASAKVRECKRVHGYVLKLGFGSYNAVVNSLIAAYFKCGEVESARILFDELSD 221

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++ +WN M+            L  + +M   GV+ +  +   ++  C+    L  G+ L
Sbjct: 222 RDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRAL 281

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H++ +K G+    +   N L+D YS CG+L  A + F  +    ++SW SI++ +    L
Sbjct: 282 HAYGVKAGFSG-GVMFNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGL 340

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
            ++A+ LF  MQ    RP I +    ++  + + ++  G+++H ++ K      ++ V +
Sbjct: 341 HYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSLDKGREVHNHIKKNNMG-SNLPVSN 399

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL +MY KC  +E +  +F   P +++   N+++     +    +A+++F  M  + +  
Sbjct: 400 ALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDMQKQ-LKP 458

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D+VT++  L A +  A+   G  R +H   ++ G+ S++ V+C+L+D Y +CG + L+ Q
Sbjct: 459 DDVTMACVLPACAGLAALEKG--REIHGHILRKGYFSDLHVACALVDMYVKCGLLVLAQQ 516

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F+ IP  +++ +T ++ GY  +G G+EA+   E M   G+ P++ +F  +L  C HSG+
Sbjct: 517 LFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMRVAGIEPEESSFTSILYACTHSGL 576

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +KEG  +F+SMKS   I+   +HY+CM+D+L R+G L +A + ++  P   D  +W +LL
Sbjct: 577 LKEGWKLFDSMKSECNIEPKLEHYACMVDLLIRSGNLSRAYKFIETMPIKPDAAIWGALL 636

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
             CR+H +  +  +VA  + ELEP +   Y  ++N Y+E  ++E   +I+       L  
Sbjct: 637 SGCRIHHDVELAEKVAEHIFELEPENTRYYVLLANVYAEAEKWEEVKKIQRRISKGGLKN 696

Query: 654 DIGHSLIEV 662
           D G S IEV
Sbjct: 697 DQGCSWIEV 705



 Score =  207 bits (528), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 136/492 (27%), Positives = 253/492 (51%), Gaps = 11/492 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +T+ SVL +C+      +G ++H  + S G  ++  +G+ LV +Y+  G  V+   +FD 
Sbjct: 58  NTYCSVLQLCAELKSLEDGKRVHSIISSNGMAIDEVLGAKLVFMYVNCGDLVKGRRIFDG 117

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +    +  WNL++  + ++    E + ++ KM+  G+  +  +F  +++G +    + E 
Sbjct: 118 ILNDKIFLWNLLMSEYAKIGNYRESVGLFEKMQELGIRGDSYTFTCVLKGFAASAKVREC 177

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++H +V+KLG+   N  V N+L+  Y  CG +  A+  FD +   DV+SWNS++S    
Sbjct: 178 KRVHGYVLKLGFGSYNA-VVNSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTM 236

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                + LE F +M          + V  L   +  GN+  G+ +H Y  K GF  G V 
Sbjct: 237 NGFSRNGLEFFIQMLNLGVDVDSATLVNVLVACANVGNLTLGRALHAYGVKAGFS-GGVM 295

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
             + L DMY KC  +  +  VF      ++    S++ + +  G   +A+ +F  M  +G
Sbjct: 296 FNNTLLDMYSKCGNLNGANEVFVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKG 355

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D   +++ + A + S S + G  R +H    K+   SN+ VS +LM+ Y++CG +E 
Sbjct: 356 LRPDIYAVTSVVHACACSNSLDKG--REVHNHIKKNNMGSNLPVSNALMNMYAKCGSMEE 413

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           ++ +F ++P  N+V + +++ GYS+N +  EAL +   M Q+ L PD VT  CVL  C  
Sbjct: 414 ANLIFSQLPVKNIVSWNTMIGGYSQNSLPNEALQLFLDM-QKQLKPDDVTMACVLPACAG 472

Query: 531 SGMVKEGQLVFNS-MKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQQTPGGGDCMM 588
              +++G+ +    ++  Y  D    H +C ++DM  + G+L  A++L    P   D ++
Sbjct: 473 LAALEKGREIHGHILRKGYFSDL---HVACALVDMYVKCGLLVLAQQLFDMIP-KKDMIL 528

Query: 589 WSSLLRSCRVHG 600
           W+ ++    +HG
Sbjct: 529 WTVMIAGYGMHG 540



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/446 (26%), Positives = 231/446 (51%), Gaps = 5/446 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + K G + SA+ LFDE+  RD+V++N +ISGC      +  L  + +M++ G+ 
Sbjct: 197 NSLIAAYFKCGEVESARILFDELSDRDVVSWNSMISGCTMNGFSRNGLEFFIQMLNLGVD 256

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             ++T  +VL  C+N G  T G  +H   +  GF   +   + L+D+Y + G    A ++
Sbjct: 257 VDSATLVNVLVACANVGNLTLGRALHAYGVKAGFSGGVMFNNTLLDMYSKCGNLNGANEV 316

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F ++ E  + +W  ++ A        E + ++++M+++G+ P+  +   +V  C+    L
Sbjct: 317 FVKMGETTIVSWTSIIAAHVREGLHYEAIGLFDEMQSKGLRPDIYAVTSVVHACACSNSL 376

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           D+G+++H+H IK   +  N+ V+NAL++ Y+ CGS+ EA   F  +PV +++SWN+++  
Sbjct: 377 DKGREVHNH-IKKNNMGSNLPVSNALMNMYAKCGSMEEANLIFSQLPVKNIVSWNTMIGG 435

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+   L  +AL+LF  MQ  + +P   +    L   +    +  G++IHG++ + G+   
Sbjct: 436 YSQNSLPNEALQLFLDMQK-QLKPDDVTMACVLPACAGLAALEKGREIHGHILRKGY-FS 493

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            +HV  AL DMY KC ++  +  +F+  P + +     ++      G  K+A+  F  M 
Sbjct: 494 DLHVACALVDMYVKCGLLVLAQQLFDMIPKKDMILWTVMIAGYGMHGFGKEAISTFEKMR 553

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             GI  +E + ++ L A + S     G  +L      +   E  +     ++D   R G+
Sbjct: 554 VAGIEPEESSFTSILYACTHSGLLKEG-WKLFDSMKSECNIEPKLEHYACMVDLLIRSGN 612

Query: 468 IELSHQVFEKIP-SPNVVCFTSIMNG 492
           +  +++  E +P  P+   + ++++G
Sbjct: 613 LSRAYKFIETMPIKPDAAIWGALLSG 638


>gi|302762388|ref|XP_002964616.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
 gi|300168345|gb|EFJ34949.1| hypothetical protein SELMODRAFT_82072 [Selaginella moellendorffii]
          Length = 795

 Score =  292 bits (747), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 177/624 (28%), Positives = 337/624 (54%), Gaps = 16/624 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  N  +  + K G + SA+  FD +  ++  ++  +++   +  H + AL LY  M 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM- 115

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPS 161
              ++ +   +++VL  C++     EG  IH R+  + G  L++ + + L+ +Y + G  
Sbjct: 116 --DLQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LF+ +  R++++WN M+ A+ +    +E +R+Y  M    VEP+  +F  ++  C
Sbjct: 174 EDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSAC 230

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S   LLD+G+++H+ +   G  ++++ + NAL+  Y+ C  L +A K F  +P  DV+SW
Sbjct: 231 SNLGLLDQGRKIHALISSRG-TELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSW 289

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +++++ +A+ DL  +A+E + +MQL   RP+  +F   L   +  G++  G+ +H  +  
Sbjct: 290 SAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILG 349

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            G+    V+  +AL D+Y     ++ + ++F+    R       L+      G+    +E
Sbjct: 350 NGYKITLVN-GTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLE 408

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNIAVSCSL 458
           ++  M +      +V  +  + +  +SA A+LG+    R  H      G  S+  ++ SL
Sbjct: 409 LYREMKN----TTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATSL 464

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           ++ YSR G++E + QVF+K+ S + + +T+++ GY+++G    AL + + M   G  P +
Sbjct: 465 VNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSE 524

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TF+ VL  C+H+G+ ++G+ +F S++S Y +  +  HYSC+ID+L RAG L  AEEL+ 
Sbjct: 525 LTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELIN 584

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   + + WSSLL + R+H +       A  + +L+PVD A Y  +SN ++  G    
Sbjct: 585 AMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLAG 644

Query: 639 SMQIRETALARKLTRDIGHSLIEV 662
              +R T +AR + +  G S IEV
Sbjct: 645 MASVRNTMVARGVKKRRGSSWIEV 668



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 138/496 (27%), Positives = 234/496 (47%), Gaps = 15/496 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP--QLNIYSSNRTIDDFVKSGHLNSA 63
           L P     TT+   C SI  L     + S        +L++   N  +  + K G L  A
Sbjct: 117 LQPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDA 176

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           K+LF+ M  R + ++N +I+   +  H ++A+ LY++M    ++ S  TF+SVLS CSN 
Sbjct: 177 KRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSNL 233

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
           G   +G +IH  + S G  L+L + + L+ +Y R      A  +F  LP R++ +W+ M+
Sbjct: 234 GLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAMI 293

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
            AF E    DE +  Y+KM+ EGV PN  +F  ++  C+    L  G+ +H  ++  G+ 
Sbjct: 294 AAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGY- 352

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
            + +    ALVD Y++ GSL EA+  FD I   D   W  ++  Y+        LEL+  
Sbjct: 353 KITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYRE 412

Query: 304 MQLCRKRPSIRSFVE-FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           M+   K P+ +      ++  +  G     +Q H  +   G     V + ++L +MY + 
Sbjct: 413 MKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFV-LATSLVNMYSRW 471

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +ES+  VF+    R      +L+      G    A+ ++  M  EG    E+T    L
Sbjct: 472 GNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVVL 531

Query: 423 KALSVSASANLGSCRLLHCCAIKSGF--ESNIAVSCSLMDAYSRCGHIELSHQVFEKIP- 479
            A S +     G    +   +I+S +    NIA    ++D  SR G +  + ++   +P 
Sbjct: 532 YACSHAGLQEQGKQLFI---SIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMPV 588

Query: 480 SPNVVCFTSIMNGYSR 495
            PN V ++S++ G SR
Sbjct: 589 EPNDVTWSSLL-GASR 603



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/370 (25%), Positives = 180/370 (48%), Gaps = 18/370 (4%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L+  +Q+H  +   G    N+F+ N +V  Y  CGS+  A+ +FD I   +  SW S+++
Sbjct: 40  LESVRQIHDRIS--GAASANVFLGNEIVRAYGKCGSVASARAAFDAIARKNDYSWGSMLT 97

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA       AL+L+ RM L   +P+   +   L   +    +  GK IH  ++      
Sbjct: 98  AYAQNGHYRAALDLYKRMDL---QPNPVVYTTVLGACASIKALEEGKAIHSRISGTKGLK 154

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V ++++L  MY KC  +E +  +FE   GRS+   N+++ +   SG+ ++A+ ++  M
Sbjct: 155 LDVILENSLLTMYAKCGSLEDAKRLFERMSGRSVSSWNAMIAAYAQSGHFEEAIRLYEDM 214

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
                   +V  S       +SA +NLG     R +H      G E ++++  +L+  Y+
Sbjct: 215 --------DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMYA 266

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           RC  ++ + ++F+++P  +VV +++++  ++   +  EA++    M   G+ P+  TF  
Sbjct: 267 RCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFAS 326

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL  C   G ++ G+ V + +    G      + + ++D+    G LD+A  L  Q    
Sbjct: 327 VLLACASVGDLRAGRAVHDQILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIE-N 384

Query: 584 GDCMMWSSLL 593
            D  +W+ L+
Sbjct: 385 RDEGLWTVLI 394


>gi|297740904|emb|CBI31086.3| unnamed protein product [Vitis vinifera]
          Length = 766

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 178/613 (29%), Positives = 317/613 (51%), Gaps = 6/613 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +V  G    AK +F ++       +N +I G         AL  Y +M+  G      TF
Sbjct: 91  YVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTF 150

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             V+  C        G  +H ++  +GF L++++GS L+  Y   G    A  LFD +P 
Sbjct: 151 PYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPS 210

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++   WN+ML  + +    D    ++ +M+     PN ++F  ++  C+  ++++ G QL
Sbjct: 211 KDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270

Query: 234 HSHVIKLGWVDVNIFVAN--ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           H  V+  G ++++  VAN  AL+D Y  C  +  A+K FD     D++   +++S Y   
Sbjct: 271 HGLVVSSG-LEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLN 329

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
            +  +ALE+F  +   R R +  +    L   +    +  GK++HG++ K G   GS +V
Sbjct: 330 GMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG-GSCYV 388

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            SA+ DMY KC  ++ +   F     +   C NS++TS   +G  ++A+++F  M   G 
Sbjct: 389 GSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGT 448

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D V++S  L A +   + + G  + +H   ++  F S++    +L+D YS+CG+++L+
Sbjct: 449 KYDCVSISAALSACANLPALHYG--KEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLA 506

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            +VF+ +   N V + SI+  Y  +G  +++L++   M+  G+ PD VTFL +++ C H+
Sbjct: 507 CRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHA 566

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G V EG   F  M    GI A  +HY+CM+D+ GRAG L++A  ++   P   D  +W +
Sbjct: 567 GQVDEGIHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGT 626

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +CR+HGN  +    +  L +L+P +   Y  +SN ++  G++E  ++IR     R +
Sbjct: 627 LLGACRLHGNVELAEVASRNLFDLDPQNSGYYVLLSNVHANAGQWESVLKIRSLMKERGV 686

Query: 652 TRDIGHSLIEVNS 664
            +  G S I+VN+
Sbjct: 687 QKVPGCSWIDVNN 699



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 136/501 (27%), Positives = 250/501 (49%), Gaps = 12/501 (2%)

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           H     A    S+L  C++    ++G Q H ++L  G G N  +G+ L+ +Y+  G  + 
Sbjct: 40  HNDDSLAPQLVSILQTCTDPSGLSQGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLD 99

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A ++F +L       WN M+R F  + + D  L  Y KM   G  P+  +F Y+++ C  
Sbjct: 100 AKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGG 159

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +  G+ +H  +  +G+ ++++FV ++L+ FYS  G + +A+  FD +P  D + WN 
Sbjct: 160 LNSVALGRVVHDKIQFMGF-ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNV 218

Query: 284 IVSIY---ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           +++ Y    D+D   +A  +F  M+     P+  +F   L+  +    + FG Q+HG V 
Sbjct: 219 MLNGYVKNGDWD---NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVV 275

Query: 341 KLGFDHGS-VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             G +  S V    AL D+Y KC  +E +  +F+      +  C ++++  + +G   +A
Sbjct: 276 SSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIVVCTAMISGYVLNGMNNNA 335

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +E+F +++ E +  + VTL++ L A +  A+  LG  + LH   +K+G   +  V  ++M
Sbjct: 336 LEIFRWLLQERMRANSVTLASVLPACAGLAALTLG--KELHGHILKNGHGGSCYVGSAIM 393

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG ++L+HQ F  I   + VC+ S++   S+NG   EA+D+   M   G   D V
Sbjct: 394 DMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCV 453

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +    L+ C +   +  G+ +   M       +D    S +IDM  + G LD A  +   
Sbjct: 454 SISAALSACANLPALHYGKEIHAFMMRG-AFRSDLFAESALIDMYSKCGNLDLACRVFDT 512

Query: 580 TPGGGDCMMWSSLLRSCRVHG 600
                + + W+S++ +   HG
Sbjct: 513 MEEKNE-VSWNSIIAAYGNHG 532



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 113/494 (22%), Positives = 237/494 (47%), Gaps = 7/494 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ-PNPQLNIYSSNRTIDDFVKSGH 59
           ML    LP   T   +   C  +  ++   ++    Q    +L+++  +  I  + ++G 
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A+ LFD MP++D V +N++++G  K      A  ++ EM       ++ TF+ VLSV
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSV 257

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGS--PLVDLYMRMGPSVRALDLFDELPERNLA 177
           C++      G Q+H  V+S G  ++  + +   L+D+Y +      A  +FD+    ++ 
Sbjct: 258 CASEIMINFGSQLHGLVVSSGLEMDSPVANTFALIDIYFKCRDVEMARKIFDQRTPVDIV 317

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
               M+  +      +  L ++  +  E +  N ++   ++  C+    L  GK+LH H+
Sbjct: 318 VCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHI 377

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K G    + +V +A++D Y+ CG L  A ++F  I   D + WNS+++  +      +A
Sbjct: 378 LKNG-HGGSCYVGSAIMDMYAKCGRLDLAHQTFIGISDKDAVCWNSMITSCSQNGKPEEA 436

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           ++LF +M +   +    S    L+  +    +++GK+IH ++ +  F    +  +SAL D
Sbjct: 437 IDLFRQMGMAGTKYDCVSISAALSACANLPALHYGKEIHAFMMRGAF-RSDLFAESALID 495

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  ++ +  VF++   ++    NS++ +  + G +KD++ +F  M+ +GI  D VT
Sbjct: 496 MYSKCGNLDLACRVFDTMEEKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVT 555

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               + A   +   + G      C   + G  + +     ++D + R G +  +  +   
Sbjct: 556 FLAIISACGHAGQVDEG-IHYFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINS 614

Query: 478 IP-SPNVVCFTSIM 490
           +P SP+   + +++
Sbjct: 615 MPFSPDAGVWGTLL 628


>gi|15234006|ref|NP_193610.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206861|sp|Q9SN39.1|PP320_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g18750, chloroplastic; Flags: Precursor
 gi|4539394|emb|CAB37460.1| putative protein [Arabidopsis thaliana]
 gi|7268669|emb|CAB78877.1| putative protein [Arabidopsis thaliana]
 gi|332658686|gb|AEE84086.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 871

 Score =  292 bits (747), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 187/659 (28%), Positives = 346/659 (52%), Gaps = 14/659 (2%)

Query: 11  RTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL---NIYSSNRTIDDFVKSGHLNSAKKLF 67
           RT+ ++   C     L     +D++ + N  +   N+ S    +  +   G L  A ++F
Sbjct: 95  RTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVIDSNLGSKLSLM--YTNCGDLKEASRVF 152

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
           DE+     + +N+L++   K      ++ L+ +M+S G++  + TFS V    S+     
Sbjct: 153 DEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVH 212

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            G Q+H  +L  GFG    +G+ LV  Y++      A  +FDE+ ER++ +WN ++  + 
Sbjct: 213 GGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYV 272

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                ++ L ++ +M   G+E +  +   +  GC+   L+  G+ +HS  +K  +   + 
Sbjct: 273 SNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDR 332

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           F  N L+D YS CG L  AK  F  +    V+S+ S+++ YA   L  +A++LF  M+  
Sbjct: 333 F-CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEE 391

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVI 365
              P + +    LN  +R   +  GK++H ++ +  LGFD   + V +AL DMY KC  +
Sbjct: 392 GISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD---IFVSNALMDMYAKCGSM 448

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKA 424
           + +  VF     + +   N+++     +    +A+ +F  +++E     DE T++  L A
Sbjct: 449 QEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPA 508

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +  ++ + G  R +H   +++G+ S+  V+ SL+D Y++CG + L+H +F+ I S ++V
Sbjct: 509 CASLSAFDKG--REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLV 566

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T ++ GY  +G G+EA+ +   M Q G+  D+++F+ +L  C+HSG+V EG   FN M
Sbjct: 567 SWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNIM 626

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           +    I+   +HY+C++DML R G L KA   ++  P   D  +W +LL  CR+H +  +
Sbjct: 627 RHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVKL 686

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             +VA  + ELEP +   Y  ++N Y+E  ++E   ++R+    R L ++ G S IE+ 
Sbjct: 687 AEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 745


>gi|255543164|ref|XP_002512645.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548606|gb|EEF50097.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 716

 Score =  291 bits (746), Expect = 5e-76,   Method: Compositional matrix adjust.
 Identities = 165/593 (27%), Positives = 329/593 (55%), Gaps = 6/593 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           MP R+ V++  LI G  +     + + L+  +   G + +   F+++L +  +       
Sbjct: 1   MPDRNTVSFVTLIQGYVQSFQLDEVVDLFSRVHREGHELNPFVFTTILKLLVSVECAELA 60

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
             +H  +  LG   N ++G+ L+D Y   G    A   FD +  +++ +W  M+  + E 
Sbjct: 61  YSLHACIYKLGHESNAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAEN 120

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM-LLDEGKQLHSHVIKLGWVDVNIF 248
            R  + L+++ +M+  G  PN  +F  +++ C IG+     GK +H  V+K  + +++++
Sbjct: 121 DRFQDSLQLFAEMRMVGFNPNHFTFAGVLKAC-IGLEAFSVGKSVHGCVLKTCY-EMDLY 178

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V   L+D Y+  G   +  + F+ +P  DVI W+ ++S YA  +   +A+ELF +M+   
Sbjct: 179 VGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAF 238

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
             P+  +F   L   +   N+  GKQ+H +V K+G D G+V V +AL D+Y KC  +++S
Sbjct: 239 VLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLD-GNVFVSNALMDVYAKCGRLDNS 297

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           + +F   P R+    N+++   + SG+   A+ ++  M++  +   EVT S+ L+A +  
Sbjct: 298 MKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASL 357

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           A+  LG+   +H  ++K+ ++ ++ V  +L+D Y++CG I+ +  VF+ +   + + + +
Sbjct: 358 AAMELGT--QIHSLSLKTIYDKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEISWNA 415

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           +++GYS +G+  EAL   ++M +   +P+K+TF+ +L+ C+++G++  GQ  F SM   Y
Sbjct: 416 MISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMVQDY 475

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           GI+   +HY+CM+ +LGR+G LDKA +L+++ P   +  +W +LL +C +H +  +G   
Sbjct: 476 GIEPCMEHYTCMVWLLGRSGHLDKAVKLIEEIPLEPNVKVWRALLGACVIHNDVDLGIMS 535

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           A  +++++P D A +  +SN Y+    +     +R+    + + ++ G S IE
Sbjct: 536 AQQILQIDPQDEATHVLLSNIYARTRRWNSVASVRKFMKNKGVKKEPGLSWIE 588



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 121/449 (26%), Positives = 229/449 (51%), Gaps = 4/449 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N +     ID +   G +NSA++ FD +  +DMV++  +++   +    + +L L+ EM 
Sbjct: 75  NAFVGTALIDAYAVCGSVNSARQAFDAIACKDMVSWTGMVACYAENDRFQDSLQLFAEMR 134

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G   +  TF+ VL  C     ++ G  +H  VL   + ++LY+G  L+DLY + G + 
Sbjct: 135 MVGFNPNHFTFAGVLKACIGLEAFSVGKSVHGCVLKTCYEMDLYVGVGLLDLYTKFGDAN 194

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
             L +F+E+P+ ++  W+ M+  + + ++  E + ++ +M+   V PN  +F  +++ C+
Sbjct: 195 DVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQMRRAFVLPNQFTFASVLQSCA 254

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  GKQ+H HV+K+G +D N+FV+NAL+D Y+ CG L  + K F  +P  + ++WN
Sbjct: 255 SIENLQLGKQVHCHVLKVG-LDGNVFVSNALMDVYAKCGRLDNSMKLFMELPNRNEVTWN 313

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y        AL L+  M  C+ + S  ++   L   +    +  G QIH    K 
Sbjct: 314 TMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRACASLAAMELGTQIHSLSLKT 373

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            +D   V V +AL DMY KC  I+++  VF+    R     N++++     G + +A++ 
Sbjct: 374 IYDKDVV-VGNALIDMYAKCGSIKNARLVFDMLSERDEISWNAMISGYSMHGLVGEALKA 432

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M +     +++T  + L A S +   ++G            G E  +     ++   
Sbjct: 433 FQMMQETECVPNKLTFVSILSACSNAGLLDIGQ-NYFKSMVQDYGIEPCMEHYTCMVWLL 491

Query: 463 SRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
            R GH++ + ++ E+IP  PNV  + +++
Sbjct: 492 GRSGHLDKAVKLIEEIPLEPNVKVWRALL 520



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 179/341 (52%), Gaps = 11/341 (3%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++++Y     +D + K G  N   ++F+EMP  D++ ++ +IS   +    ++A+ L+ +
Sbjct: 174 EMDLYVGVGLLDLYTKFGDANDVLRVFEEMPKHDVIPWSFMISRYAQSNQSREAVELFGQ 233

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +  +  TF+SVL  C++      G Q+HC VL +G   N+++ + L+D+Y + G 
Sbjct: 234 MRRAFVLPNQFTFASVLQSCASIENLQLGKQVHCHVLKVGLDGNVFVSNALMDVYAKCGR 293

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              ++ LF ELP RN  TWN M+  + +    D+ L +Y  M    V+ + +++  ++R 
Sbjct: 294 LDNSMKLFMELPNRNEVTWNTMIVGYVQSGDGDKALSLYKNMLECQVQASEVTYSSVLRA 353

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    ++ G Q+HS  +K  + D ++ V NAL+D Y+ CGS+  A+  FD +   D IS
Sbjct: 354 CASLAAMELGTQIHSLSLKTIY-DKDVVVGNALIDMYAKCGSIKNARLVFDMLSERDEIS 412

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT-----GNVYFGKQI 335
           WN+++S Y+ + L+ +AL+ F  MQ     P+  +FV  L+  S       G  YF   +
Sbjct: 413 WNAMISGYSMHGLVGEALKAFQMMQETECVPNKLTFVSILSACSNAGLLDIGQNYFKSMV 472

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
             Y  +   +H +  V      + G+   ++ +V + E  P
Sbjct: 473 QDYGIEPCMEHYTCMVW-----LLGRSGHLDKAVKLIEEIP 508


>gi|356503988|ref|XP_003520781.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 771

 Score =  291 bits (746), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 165/536 (30%), Positives = 292/536 (54%), Gaps = 8/536 (1%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLATWNLMLRAFCE 188
           QIH ++++     +L   + L+ LY + G     L LF+  P    N+ TW  ++     
Sbjct: 118 QIHSQLVTTNNHASLANINTLLLLYAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSR 177

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
            ++P + L  +N+M+  G+ PN  +F  ++  C+   LL EG+Q+H+ + K  +++ + F
Sbjct: 178 SNKPFQALTFFNRMRTTGIYPNHFTFSAILPACAHAALLSEGQQIHALIHKHCFLN-DPF 236

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           VA AL+D Y+ CGS++ A+  FD +P  +++SWNS++  +    L   A+ +F   ++  
Sbjct: 237 VATALLDMYAKCGSMLLAENVFDEMPHRNLVSWNSMIVGFVKNKLYGRAIGVF--REVLS 294

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
             P   S    L+  +    + FGKQ+HG + K G   G V+V+++L DMY KC + E +
Sbjct: 295 LGPDQVSISSVLSACAGLVELDFGKQVHGSIVKRGLV-GLVYVKNSLVDMYCKCGLFEDA 353

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F     R +   N ++       N + A   F  M+ EG+  DE + S+   A +  
Sbjct: 354 TKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIREGVEPDEASYSSLFHASASI 413

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           A+   G+  ++H   +K+G   N  +S SL+  Y +CG +  ++QVF +    NVVC+T+
Sbjct: 414 AALTQGT--MIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTA 471

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++  + ++G   EA+ + E M+  G++P+ +TF+ VL+ C+H+G + +G   FNSM +V+
Sbjct: 472 MITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSHTGKIDDGFKYFNSMANVH 531

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            I    +HY+CM+D+LGR G L++A   ++  P   D ++W +LL +C  H N  +GR V
Sbjct: 532 NIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREV 591

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           A  L +LEP +   Y  +SN Y   G  E + ++R       + ++ G S I+V +
Sbjct: 592 AERLFKLEPDNPGNYMLLSNIYIRHGMLEEADEVRRLMGINGVRKESGCSWIDVKN 647



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 142/545 (26%), Positives = 259/545 (47%), Gaps = 35/545 (6%)

Query: 54  FVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           + K G ++    LF+  P  + ++VT+  LI+   +   P QAL  ++ M + GI  +  
Sbjct: 142 YAKCGSIHHTLLLFNTYPHPSTNVVTWTTLINQLSRSNKPFQALTFFNRMRTTGIYPNHF 201

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TFS++L  C++A   +EG QIH  +    F  + ++ + L+D+Y + G  + A ++FDE+
Sbjct: 202 TFSAILPACAHAALLSEGQQIHALIHKHCFLNDPFVATALLDMYAKCGSMLLAENVFDEM 261

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           P RNL +WN M+  F +       + ++ ++ + G  P+ +S   ++  C+  + LD GK
Sbjct: 262 PHRNLVSWNSMIVGFVKNKLYGRAIGVFREVLSLG--PDQVSISSVLSACAGLVELDFGK 319

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           Q+H  ++K G V + ++V N+LVD Y  CG   +A K F      DV++WN ++      
Sbjct: 320 QVHGSIVKRGLVGL-VYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRC 378

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
                A   F  M      P   S+    + ++    +  G  IH +V K G    S  +
Sbjct: 379 RNFEQACTYFQAMIREGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNS-RI 437

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            S+L  MYGKC  +  +  VF      ++ C  +++T     G   +A+++F  M++EG+
Sbjct: 438 SSSLVTMYGKCGSMLDAYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGV 497

Query: 412 GLDEVTLSTTLKALSVSASANLG-----SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             + +T  + L A S +   + G     S   +H   IK G E     +C ++D   R G
Sbjct: 498 VPEYITFVSVLSACSHTGKIDDGFKYFNSMANVH--NIKPGLEH---YAC-MVDLLGRVG 551

Query: 467 HIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDMLEVMIQRGLIPDKVTFL 522
            +E + +  E +P  P+ + + +++    ++    MGRE  + L       L PD     
Sbjct: 552 RLEEACRFIESMPFEPDSLVWGALLGACGKHANVEMGREVAERL-----FKLEPDNPGNY 606

Query: 523 CVLAGCN-HSGMVKEGQLVFNSMKSVYGIDADRQHYSC-MIDMLGRAGIL---DKAEELL 577
            +L+      GM++E     + ++ + GI+  R+   C  ID+  R  +    D++    
Sbjct: 607 MLLSNIYIRHGMLEEA----DEVRRLMGINGVRKESGCSWIDVKNRTFVFNANDRSHSRT 662

Query: 578 QQTPG 582
           Q+  G
Sbjct: 663 QEIYG 667



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 69/266 (25%), Positives = 132/266 (49%), Gaps = 4/266 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           +Y  N  +D + K G    A KLF     RD+VT+N++I GC + R+ +QA   +  M+ 
Sbjct: 334 VYVKNSLVDMYCKCGLFEDATKLFCGGGDRDVVTWNVMIMGCFRCRNFEQACTYFQAMIR 393

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G++   +++SS+    ++    T+G  IH  VL  G   N  I S LV +Y + G  + 
Sbjct: 394 EGVEPDEASYSSLFHASASIAALTQGTMIHSHVLKTGHVKNSRISSSLVTMYGKCGSMLD 453

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F E  E N+  W  M+  F +    +E ++++ +M  EGV P  ++F  ++  CS 
Sbjct: 454 AYQVFRETKEHNVVCWTAMITVFHQHGCANEAIKLFEEMLNEGVVPEYITFVSVLSACSH 513

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWN 282
              +D+G +  + +  +  +   +     +VD     G L EA +  + +P + D + W 
Sbjct: 514 TGKIDDGFKYFNSMANVHNIKPGLEHYACMVDLLGRVGRLEEACRFIESMPFEPDSLVWG 573

Query: 283 SIVSI---YADYDLIFDALELFFRMQ 305
           +++     +A+ ++  +  E  F+++
Sbjct: 574 ALLGACGKHANVEMGREVAERLFKLE 599


>gi|115468242|ref|NP_001057720.1| Os06g0506100 [Oryza sativa Japonica Group]
 gi|52075894|dbj|BAD45840.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113595760|dbj|BAF19634.1| Os06g0506100 [Oryza sativa Japonica Group]
          Length = 766

 Score =  291 bits (745), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 184/641 (28%), Positives = 328/641 (51%), Gaps = 14/641 (2%)

Query: 30  LLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK 87
           L+  S   P+ QL  N    N  I  + +    +SA+++FDEMPAR+ V++  +I+   +
Sbjct: 70  LVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQ 129

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
                 AL L+  M+  G         S +  C+  G    G Q+H   L    G +L +
Sbjct: 130 NGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIV 189

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            + LV +Y + G       LF+ + +++L +W  ++  F +     E L+++ +M  EG 
Sbjct: 190 QNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFREMIVEGS 249

Query: 208 E-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
             PN   F    R C      + G+Q+H   IK   +D +++V  +L D Y+ C +L  A
Sbjct: 250 HHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYR-LDRDLYVGCSLSDMYARCKNLDSA 308

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           + +F  I   D++SWNSIV+ Y+   L+ +AL LF  M+    RP   +    L      
Sbjct: 309 RVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGR 368

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
             +Y G+ IH Y+ KLG D G V V ++L  MY +C+ + S++ VF     + +   NS+
Sbjct: 369 DALYHGRLIHSYLVKLGLD-GDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSI 427

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCA 443
           +T+     + ++ +++F  +      LD ++L+  L     SASA LG     + +H  A
Sbjct: 428 LTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVL-----SASAELGYFEMVKQVHAYA 482

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGREA 502
            K+G   +  +S +L+D Y++CG ++ + ++FE +  + +V  ++S++ GY++ G  +EA
Sbjct: 483 FKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEA 542

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
            D+   M   G+ P+ VTF+ VL  C+  G V EG   ++ M+  YGI   R+H SC++D
Sbjct: 543 FDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVD 602

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622
           +L RAG L +A   + Q P   D +MW +LL + ++H +  +G+R A  ++ ++P   A 
Sbjct: 603 LLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAA 662

Query: 623 YSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           Y  + N Y+  G +    ++++      + +  G S +++ 
Sbjct: 663 YVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLK 703



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 130/492 (26%), Positives = 232/492 (47%), Gaps = 19/492 (3%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLS-------LGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +++++S CS      +G ++H  +++            N  +G+ L+ +Y R      A 
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FDE+P RN  +W  ++ A  +  R  + L +++ M   G   +  +    VR C+   
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  G+Q+H+H +K      ++ V NALV  YS  G + +    F+ I   D+ISW SI+
Sbjct: 167 DVGTGRQVHAHALK-SERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSII 225

Query: 286 SIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           + +A      +AL++F  M +     P+   F          G+  +G+QIHG   K   
Sbjct: 226 AGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 285

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D   ++V  +L+DMY +C  ++S+   F       L   NS++ +    G + +A+ +F 
Sbjct: 286 DR-DLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFS 344

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M D G+  D +T+   L A  V   A L   RL+H   +K G + +++V  SL+  Y+R
Sbjct: 345 EMRDSGLRPDGITVRGLLCA-CVGRDA-LYHGRLIHSYLVKLGLDGDVSVCNSLLSMYAR 402

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           C  +  +  VF +I   +VV + SI+   +++    E L +  ++ +     D+++   V
Sbjct: 403 CSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNV 462

Query: 525 LAGCNHSG---MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L+     G   MVK  Q+   + K+  G+  DR   + +ID   + G LD A  L +   
Sbjct: 463 LSASAELGYFEMVK--QVHAYAFKA--GLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMG 518

Query: 582 GGGDCMMWSSLL 593
              D   WSSL+
Sbjct: 519 NNRDVFSWSSLI 530


>gi|147820082|emb|CAN67135.1| hypothetical protein VITISV_005195 [Vitis vinifera]
          Length = 800

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 186/628 (29%), Positives = 322/628 (51%), Gaps = 30/628 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +IY++N  I  + K G +  A K+FDE   RD V++N +I+G   F + + AL     M 
Sbjct: 33  SIYTANNIISGYAKCGEIRIASKMFDETSQRDAVSWNTMIAGXVNFGNFETALEFLKSMK 92

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            +G      +F S+L   +  G+   G Q+H  ++ +G+  N++ GS L+D+Y +     
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMIVKIGYEGNVFAGSALLDMYAKCERVE 152

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A ++F  +  RN  TWN ++  +  +        + + M+ EGVE +  +F  ++    
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAHVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FIPVDDVISW 281
              L     Q+H+ ++K G +  +  V NA++  YS CGS+ +A++ FD  I   D+++W
Sbjct: 213 DPDLHKLTTQVHAKIVKHG-LASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLVTW 271

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NS+++ Y   +   +A ELF  MQ+    P I ++   ++ A    +   GK +HG V K
Sbjct: 272 NSMLAAYLVNNQEEEAFELFLEMQVLGFEPDIYTYTSVISAAFEXAHQGQGKSLHGLVIK 331

Query: 342 LGFDHGSVHVQSALTDMYGKCNV--IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            G +   V + ++L  MY K +   ++ ++ +FES   +     NS++T    SG  +DA
Sbjct: 332 RGLEF-LVPISNSLIAMYLKSHSKSMDEALNIFESLENKDHVSWNSILTGFSQSGLSEDA 390

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           ++ F  M  + + +D    S  L++ S  A+  LG                         
Sbjct: 391 LKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQ------------------------ 426

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             +  CG IE + + F+  P  + + + S++ GY+++G G+ ALD+  +M  R +  D +
Sbjct: 427 QVHVLCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHI 486

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL  C+H G+V+EG     SM+S YGI    +HY+CMID+LGRAG LD+A+ L++ 
Sbjct: 487 TFVAVLTACSHIGLVEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEA 546

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D M+W +LL +CR  G+  +  +VA+ L+ELEP +   Y  +S+ +  +  +   
Sbjct: 547 MPFEPDAMVWKTLLGACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEK 606

Query: 640 MQIRETALARKLTRDIGHSLIEV-NSCH 666
             I+     R + +  G S IEV N  H
Sbjct: 607 ASIKRLMKERGVKKVPGWSWIEVKNEVH 634



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 123/487 (25%), Positives = 217/487 (44%), Gaps = 32/487 (6%)

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           LS  S    Y   +  HC  +  G   ++Y  + ++  Y + G    A  +FDE  +R+ 
Sbjct: 7   LSQSSFTALYRASVN-HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQRDA 65

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +WN M+         +  L     MK  G   +G SF  +++G +    ++ G+Q+HS 
Sbjct: 66  VSWNTMIAGXVNFGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSM 125

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           ++K+G+ + N+F  +AL+D Y+ C  + +A + F  I + + ++WN+++S YA       
Sbjct: 126 IVKIGY-EGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAHVGDRGT 184

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A  L   M+L        +F   L             Q+H  + K G    +  V +A+ 
Sbjct: 185 AFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTT-VCNAII 243

Query: 357 DMYGKCNVIESSVAVFESA-PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
             Y +C  IE +  VF+ A   R L   NS++ + L +   ++A E+F  M   G   D 
Sbjct: 244 TAYSECGSIEDAERVFDGAIETRDLVTWNSMLAAYLVNNQEEEAFELFLEMQVLGFEPDI 303

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY--SRCGHIELSHQ 473
            T ++ + A      A+ G  + LH   IK G E  + +S SL+  Y  S    ++ +  
Sbjct: 304 YTYTSVISA--AFEXAHQGQGKSLHGLVIKRGLEFLVPISNSLIAMYLKSHSKSMDEALN 361

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +FE + + + V + SI+ G+S++G+  +AL   E M  + ++ D   F  VL  C+    
Sbjct: 362 IFESLENKDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLAT 421

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           ++ GQ V               H  C        G+++ A +    TP     + W+SL+
Sbjct: 422 LQLGQQV---------------HVLC--------GVIEDARKSFDATPKDSS-IAWNSLI 457

Query: 594 RSCRVHG 600
                HG
Sbjct: 458 FGYAQHG 464



 Score = 65.5 bits (158), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L +LS S+   L    + HC AIKSG  ++I  + +++  Y++CG I ++ ++F++    
Sbjct: 4   LHSLSQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFDETSQR 63

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           + V + +++ G    G    AL+ L+ M + G   D  +F  +L G    G V+ GQ V 
Sbjct: 64  DAVSWNTMIAGXVNFGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQV- 122

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +SM    G + +    S ++DM  +   ++ A E+  ++    + + W++L     + G 
Sbjct: 123 HSMIVKIGYEGNVFAGSALLDMYAKCERVEDAFEVF-KSINIRNSVTWNAL-----ISGY 176

Query: 602 EIIGRRVANIL----MELEPVD 619
             +G R         MELE V+
Sbjct: 177 AHVGDRGTAFWLLDCMELEGVE 198


>gi|449508249|ref|XP_004163262.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g33170-like [Cucumis sativus]
          Length = 840

 Score =  291 bits (744), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 187/626 (29%), Positives = 309/626 (49%), Gaps = 40/626 (6%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  + Y+ N  I  +   G+L  A+KLF+E P  + +T++ L+SG  K     + L  + 
Sbjct: 64  PYRDKYTWNIMISAYANLGNLVEARKLFNETPIXNSITWSSLVSGYCKNGCEVEGLRQFS 123

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M S G K S  T  SVL  CS       G  IHC  + +    N+++ + LVD+Y +  
Sbjct: 124 QMWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCK 183

Query: 160 PSVRALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
             + A  LF  LP+R N   W  ML  + +     + ++ + +M+ +G+E N  +F  ++
Sbjct: 184 CLLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSIL 243

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+       G+Q+H  +I  G+   N++V +ALVD Y+ CG L  A+   D + +DDV
Sbjct: 244 TACTSISAYAFGRQVHGCIIWSGF-GPNVYVQSALVDMYAKCGDLASARMILDTMEIDDV 302

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           + WNS++     +  + +AL LF +M     R    ++   L   +   N+  G+ +H  
Sbjct: 303 VCWNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSL 362

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K GFD     V +AL DMY K   +  ++ VF     + +    SL+T  +H+G  + 
Sbjct: 363 TIKTGFDACKT-VSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEK 421

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+++F  M    + LD+  ++    A +       G  R +H   IKS   S ++   SL
Sbjct: 422 ALQLFCDMRTARVDLDQFVVACVFSACAELTVIEFG--RQVHANFIKSSAGSLLSAENSL 479

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG +E + +V + + + NV+ +T+I+ GY++N                      
Sbjct: 480 ITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQN---------------------- 517

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
                        G+V+ GQ  F SM+ VYGI      Y+CMID+LGRAG +++AE LL 
Sbjct: 518 -------------GLVETGQSYFESMEKVYGIKPASDRYACMIDLLGRAGKINEAEHLLN 564

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           +     D  +W SLL +CRVHGN  +G R    L++LEP +   Y  +SN +S  G +E 
Sbjct: 565 RMDVEPDATIWKSLLSACRVHGNLELGERAGKNLIKLEPSNSLPYVLLSNMFSVAGRWED 624

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
           +  IR       + ++ G+S IE+ S
Sbjct: 625 AAHIRRAMKTMGIXQEPGYSWIEMKS 650



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 108/411 (26%), Positives = 199/411 (48%), Gaps = 10/411 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S    P   T+ ++   C+++  L +  ++  Y  +   + NI+ +   +D + K   
Sbjct: 125 MWSDGQKPSQYTLGSVLRACSTLSLLHTGKMIHCYAIKIQLEANIFVATGLVDMYSKCKC 184

Query: 60  LNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           L  A+ LF  +P R + V +  +++G  +     +A+  + EM + G++ +  TF S+L+
Sbjct: 185 LLEAEYLFFSLPDRKNYVQWTAMLTGYAQNGESLKAIQCFKEMRNQGMESNHFTFPSILT 244

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C++   Y  G Q+H  ++  GFG N+Y+ S LVD+Y + G    A  + D +   ++  
Sbjct: 245 ACTSISAYAFGRQVHGCIIWSGFGPNVYVQSALVDMYAKCGDLASARMILDTMEIDDVVC 304

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+         +E L +++KM    +  +  ++  +++  +    L  G+ +HS  I
Sbjct: 305 WNSMIVGCVTHGYMEEALVLFHKMHNRDIRIDDFTYPSVLKSLASCKNLKIGESVHSLTI 364

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K G+ D    V+NALVD Y+  G+L  A   F+ I   DVISW S+V+ Y        AL
Sbjct: 365 KTGF-DACKTVSNALVDMYAKQGNLSCALDVFNKILDKDVISWTSLVTGYVHNGFHEKAL 423

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFA--SRTGNVYFGKQIHGYVTKLGFDHGS-VHVQSAL 355
           +LF  M+    R  +  FV    F+  +    + FG+Q+H    K     GS +  +++L
Sbjct: 424 QLFCDMRTA--RVDLDQFVVACVFSACAELTVIEFGRQVHANFIKSS--AGSLLSAENSL 479

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             MY KC  +E ++ V +S   R++    +++     +G ++     F  M
Sbjct: 480 ITMYAKCGCLEDAIRVXDSMETRNVISWTAIIVGYAQNGLVETGQSYFESM 530


>gi|357479991|ref|XP_003610281.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355511336|gb|AES92478.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 783

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 178/612 (29%), Positives = 319/612 (52%), Gaps = 11/612 (1%)

Query: 53  DFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESAS 111
           DF  + H   A+ LF  +P  D+  +N+L+ G      P  ++ LY  +  +  +     
Sbjct: 56  DFSATRH---ARALFFSVPKPDIFLFNVLVRGFSLNDSPSSSISLYTHLRRNTNLSPDNF 112

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T++  ++ CSN       + +H   +  G+G N+++GS LVDLY +    V A  +FD +
Sbjct: 113 TYAFAVAACSNDKHL---MLLHAHSIIDGYGSNVFVGSALVDLYCKFSRVVYARKVFDGM 169

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           PER+   WN M+    +    D+ ++++ +M A+GV  +  +   ++   +    L  G 
Sbjct: 170 PERDTVLWNTMINGLVKNCCFDDSIQLFREMVADGVRVDSSTVTAVLPAAAELQELKVGM 229

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +    +K+G+   + +V   L+  YS CG +  A+  F  I   D+I++N+++S +   
Sbjct: 230 GIQCLALKIGFGFCD-YVLTGLISLYSKCGDVNTARLLFRRINRPDLIAYNAMISGFTAN 288

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
                +++LF  +    +R S  + V  +   S  G+++    IHG+  K G       V
Sbjct: 289 GGTECSVKLFRELLFSGERVSSSTIVGLIPLHSPFGHLHLACSIHGFCVKSGIILNPT-V 347

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +A T +Y K N I+ +  +F+ +P +++   N++++    +G+ + A+ +F  M+    
Sbjct: 348 STAFTAIYNKLNEIDLARHLFDESPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEF 407

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             + VT++T L A +   S + G  + +H        E NI VS +L+D Y++CG+I  +
Sbjct: 408 TPNAVTITTILSACAQLGSLSFG--KWVHHLIKSENLEPNIYVSTALVDMYAKCGNISEA 465

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            Q+F+ +   N V + +++ GY  +G G EAL +   M+  G  P  VTFL VL  C+H+
Sbjct: 466 WQLFDSMSEKNTVTWNTMIFGYGLHGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHA 525

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V EG+ +F++M + Y I+   +HY+CM+D+LGR+G L+KA E +++ P      +W +
Sbjct: 526 GLVGEGEEIFHNMVNKYRIEPLIEHYACMVDILGRSGQLEKALEFIKKMPVEPGPAVWGT 585

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +C +H +  I R  +  L EL+P     Y  +SN YS    F  +  IR+    RKL
Sbjct: 586 LLGACMIHKDTDIARLASERLFELDPGSVGYYVLLSNIYSVERNFPKAASIRQVVKKRKL 645

Query: 652 TRDIGHSLIEVN 663
            +  G +LIEVN
Sbjct: 646 AKSPGCTLIEVN 657



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 202/447 (45%), Gaps = 23/447 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  +  +D + K   +  A+K+FD MP RD V +N +I+G  K      ++ L+ EMV
Sbjct: 142 NVFVGSALVDLYCKFSRVVYARKVFDGMPERDTVLWNTMINGLVKNCCFDDSIQLFREMV 201

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G++  +ST ++VL   +       G+ I C  L +GFG   Y+ + L+ LY + G   
Sbjct: 202 ADGVRVDSSTVTAVLPAAAELQELKVGMGIQCLALKIGFGFCDYVLTGLISLYSKCGDVN 261

Query: 163 RALDLFDELPERNLATWNLMLRAF-------CELSRPDEVLRMYNKMKAE---GVEPNGL 212
            A  LF  +   +L  +N M+  F       C +    E+L    ++ +    G+ P   
Sbjct: 262 TARLLFRRINRPDLIAYNAMISGFTANGGTECSVKLFRELLFSGERVSSSTIVGLIPLHS 321

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
            F ++   CSI          H   +K G + +N  V+ A    Y+    +  A+  FD 
Sbjct: 322 PFGHLHLACSI----------HGFCVKSGII-LNPTVSTAFTAIYNKLNEIDLARHLFDE 370

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
            P   V++WN+++S Y        A+ LF  M      P+  +    L+  ++ G++ FG
Sbjct: 371 SPEKTVVAWNAMISGYTQNGSTETAISLFKEMMKTEFTPNAVTITTILSACAQLGSLSFG 430

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           K +H  +     +  +++V +AL DMY KC  I  +  +F+S   ++    N+++     
Sbjct: 431 KWVHHLIKSENLE-PNIYVSTALVDMYAKCGNISEAWQLFDSMSEKNTVTWNTMIFGYGL 489

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
            G   +A++++  M+  G     VT  + L A S +     G   + H    K   E  I
Sbjct: 490 HGYGHEALKLYNEMLHLGYNPSAVTFLSVLYACSHAGLVGEGE-EIFHNMVNKYRIEPLI 548

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIP 479
                ++D   R G +E + +  +K+P
Sbjct: 549 EHYACMVDILGRSGQLEKALEFIKKMP 575


>gi|357126882|ref|XP_003565116.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 796

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 182/638 (28%), Positives = 340/638 (53%), Gaps = 15/638 (2%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL- 95
            P+P L + ++       + +G  + A++L DEMP R+ V++NLLI    +    +++L 
Sbjct: 40  HPSPSLFLRNTLLAAYCRLGAGDTHQARRLLDEMPRRNAVSFNLLIDAYSRAGQTEESLE 99

Query: 96  -YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
            +L+    +  +K    T+++ L+ CS AG   EG  +H   +  G    +++ + LV +
Sbjct: 100 TFLHAHRAAE-VKADRFTYAAALAACSRAGRLKEGKVVHALAVLEGLAEGVFVSNSLVSM 158

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y R G    A  +FD   ER+  +WN ++  +  +   +E+LR++  M+   +  N  + 
Sbjct: 159 YARCGDMGEARRVFDVTEERDDVSWNSLVSGYLRVGAHEEMLRVFALMRRCAMGLNSFAL 218

Query: 215 CYMVRGCSIGMLLDEG--KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
             +++ CS G     G  + +H  V+K G +D ++F+A+A+VD Y+  G+L EA   F  
Sbjct: 219 GSVIKCCSGGDGSVRGIAEAVHGCVVKAG-LDTDLFLASAMVDMYAKRGALSEAVALFKS 277

Query: 273 IPVDDVISWNSIVS------IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           +   +V+ +N++++           +++ +AL L+  +Q     P+  +F   +   +  
Sbjct: 278 VLDPNVVVFNAMIAGLCRDEAAVHKEVVREALSLYSELQSRGMEPTEFTFSSVIRACNLA 337

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G++ FGKQIHG V K  F  G   + SAL D+Y     +E     F S P + +    ++
Sbjct: 338 GDIEFGKQIHGQVLKHCF-QGDDFIGSALIDLYFNSACMEDGFRCFRSVPKQDVVTWTAM 396

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           ++  + +   + A+ +F  ++  G+  D  T+S+ + A +  A    G    + C A KS
Sbjct: 397 ISGCVQNELFERALALFHELLGVGLKPDPFTISSVMNACASLAVVRTGE--QMQCFATKS 454

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           GF+   A+  S +  Y+R G++E + Q F+++ S +VV +++I++ ++++G  R+AL   
Sbjct: 455 GFDRFTAMGNSCIHMYARSGNVEAAIQRFQEMESHDVVSWSAIISSHAQHGCARQALQFF 514

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M+   ++P+++TFL VL  C+H G+V EG   +  MK  YG+    +H +C++D+LGR
Sbjct: 515 NEMVGAKVVPNEITFLGVLTACSHGGLVDEGLRYYEIMKMEYGLCPTVKHCTCVVDLLGR 574

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           AG L  AE  ++ +    + ++W SLL SCR+H +   G+ VA+ +MEL+P     Y  +
Sbjct: 575 AGRLADAEAFIRDSIFHDEPVVWQSLLGSCRIHRDMERGQLVADRIMELQPASSGCYVNL 634

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            N Y + GE  +  +IR+    R + ++ G S IE+ S
Sbjct: 635 YNMYLDAGELSLGSKIRDLMKERGVKKEPGLSWIELRS 672


>gi|297834086|ref|XP_002884925.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297330765|gb|EFH61184.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 694

 Score =  291 bits (744), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/537 (29%), Positives = 299/537 (55%), Gaps = 13/537 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH R+L LG   + ++ + L+      G    A  +FD+LP   +  WN ++R +   +
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDLPRPQVFPWNAIIRGYSRNN 98

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + L MY+KM+   V P+  +F ++++ C     L  G+ +H+ V +LG+ + ++FV 
Sbjct: 99  HFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGRFVHAQVFRLGF-EADVFVQ 157

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           N L+  Y+ C  L  A+  F+ +P+ +  ++SW +IVS YA      +ALE+F +M+   
Sbjct: 158 NGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIFSQMRKMD 217

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P   + V  LN  +   ++  G+ IH  V K+G +     +  +L  MY KC  + ++
Sbjct: 218 VKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLE-TEPDLLISLNTMYAKCGQVATA 276

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F+     +L   N++++    +G  KDA+++F  M+++ +  D +++++     ++S
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITS-----AIS 331

Query: 429 ASANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           A A +GS    R +     +S +  ++ +S +L+D +++CG +E +  VF++    +VV 
Sbjct: 332 ACAQVGSLEQARWMDEYVSRSDYRDDVFISSALIDMFAKCGSVECARSVFDRTLDRDVVV 391

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +++++ GY  +G  REA+ +   M + G+ P+ VTFL +L  CNHSGMV+EG   FN M 
Sbjct: 392 WSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNRMA 451

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             + I+  +QHY+C+ID+LGRAG LD+A E+++  P      +W +LL +C+ H +  +G
Sbjct: 452 D-HKINPQQQHYACIIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           +  A  L  ++P +   Y Q+SN Y+    ++   ++R     + L +D+G S +EV
Sbjct: 511 KYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567



 Score =  158 bits (400), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 103/438 (23%), Positives = 217/438 (49%), Gaps = 7/438 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G +  A+++FD++P   +  +N +I G  +  H + AL +Y +M    +   + TF  +L
Sbjct: 67  GDITFARQVFDDLPRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLL 126

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD--ELPERN 175
             C        G  +H +V  LGF  ++++ + L+ LY +      A  +F+   LPER 
Sbjct: 127 KACGGLSHLQMGRFVHAQVFRLGFEADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERT 186

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           + +W  ++ A+ +   P E L ++++M+   V+P+ ++   ++   +    L++G+ +H+
Sbjct: 187 IVSWTAIVSAYAQNGEPVEALEIFSQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHA 246

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            V+K+G ++    +  +L   Y+ CG +  AK  FD +   ++I WN+++S YA      
Sbjct: 247 SVMKMG-LETEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGFAK 305

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           DA++LF  M     RP   S    ++  ++ G++   + +  YV++  +    V + SAL
Sbjct: 306 DAIDLFHEMINKDVRPDTISITSAISACAQVGSLEQARWMDEYVSRSDY-RDDVFISSAL 364

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DM+ KC  +E + +VF+    R +   ++++      G  ++A+ ++  M  +G+  ++
Sbjct: 365 IDMFAKCGSVECARSVFDRTLDRDVVVWSAMIVGYGLHGQAREAISLYRAMERDGVHPND 424

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VT    L A + S     G          K   +     +C ++D   R GH++ +++V 
Sbjct: 425 VTFLGLLIACNHSGMVREGWWFFNRMADHKINPQQQ-HYAC-IIDLLGRAGHLDQAYEVI 482

Query: 476 EKIP-SPNVVCFTSIMNG 492
           + +P  P V  + ++++ 
Sbjct: 483 KCMPVQPGVTVWGALLSA 500



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 71/338 (21%), Positives = 157/338 (46%), Gaps = 4/338 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFD--EMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           + +++  N  I  + K   L  A+ +F+   +P R +V++  ++S   +   P +AL ++
Sbjct: 151 EADVFVQNGLIALYAKCRRLGCARTVFEGLPLPERTIVSWTAIVSAYAQNGEPVEALEIF 210

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            +M    +K       SVL+  +      +G  IH  V+ +G      +   L  +Y + 
Sbjct: 211 SQMRKMDVKPDCVALVSVLNAFTCLQDLEQGRSIHASVMKMGLETEPDLLISLNTMYAKC 270

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LFD++   NL  WN M+  + +     + + ++++M  + V P+ +S    +
Sbjct: 271 GQVATAKILFDKMKSPNLILWNAMISGYAKNGFAKDAIDLFHEMINKDVRPDTISITSAI 330

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+    L++ + +  +V +  + D ++F+++AL+D ++ CGS+  A+  FD     DV
Sbjct: 331 SACAQVGSLEQARWMDEYVSRSDYRD-DVFISSALIDMFAKCGSVECARSVFDRTLDRDV 389

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           + W++++  Y  +    +A+ L+  M+     P+  +F+  L   + +G V  G      
Sbjct: 390 VVWSAMIVGYGLHGQAREAISLYRAMERDGVHPNDVTFLGLLIACNHSGMVREGWWFFNR 449

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           +     +    H  + + D+ G+   ++ +  V +  P
Sbjct: 450 MADHKINPQQQHY-ACIIDLLGRAGHLDQAYEVIKCMP 486



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 38/135 (28%), Positives = 64/135 (47%), Gaps = 1/135 (0%)

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           S +  A  + +S +    R +H   +  G + +  +   L+ A S  G I  + QVF+ +
Sbjct: 20  SDSFYASLIDSSTHKAQLRQIHARLLVLGLQFSGFLITKLIHASSSYGDITFARQVFDDL 79

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           P P V  + +I+ GYSRN   ++AL M   M    + PD  TF  +L  C     ++ G+
Sbjct: 80  PRPQVFPWNAIIRGYSRNNHFQDALLMYSKMQLARVSPDSFTFPHLLKACGGLSHLQMGR 139

Query: 539 LVFNSMKSVYGIDAD 553
            V   +  + G +AD
Sbjct: 140 FVHAQVFRL-GFEAD 153


>gi|242076488|ref|XP_002448180.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
 gi|241939363|gb|EES12508.1| hypothetical protein SORBIDRAFT_06g022530 [Sorghum bicolor]
          Length = 1029

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 175/624 (28%), Positives = 327/624 (52%), Gaps = 5/624 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  +  I+ +VK G ++ AKK+FD    +++V +N ++ G  +    ++ + ++  M 
Sbjct: 361 NVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMR 420

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++    TF SVL  C N      G Q+HC  +      +L++ + ++D+Y ++G   
Sbjct: 421 RADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMDADLFVANAMLDMYSKLGAID 480

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  +P ++  +WN ++         +E + M  +MK  G+ P+ +SF   +  CS
Sbjct: 481 VAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACS 540

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                + GKQ+H   IK   V  N  V ++L+D YS  G +  ++K    +    ++  N
Sbjct: 541 NIRATETGKQIHCASIKYN-VCSNHAVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPIN 599

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++     +   +A+ELF ++     +PS  +F   L+  +   +   GKQ+H Y  K 
Sbjct: 600 ALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTGPVSSVIGKQVHSYTLKS 659

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVE 401
              +    +  +L  +Y KC ++E +  +    P  ++L    + ++    +G    ++ 
Sbjct: 660 ALLNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLV 719

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           MF  M    +  DE T ++ LKA S  A+   G  + +H   IKSGF S    + +LMD 
Sbjct: 720 MFWRMRSHDVRSDEATFASVLKACSEIAALTDG--KEIHGLIIKSGFVSYETAASALMDM 777

Query: 462 YSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           YS+CG +  S ++F+++ +  N++ + S++ G+++NG   EAL + + M +  L PD+VT
Sbjct: 778 YSKCGDVISSFEIFKELKNKQNIMPWNSMIVGFAKNGYANEALLLFQKMQESQLKPDEVT 837

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
            L VL  C+H+G++ EG+ +F+SM  VYGI     HY+C+ID+LGR G L +A+E++ Q 
Sbjct: 838 LLGVLIACSHAGLISEGRNLFDSMSQVYGIVPRVDHYACLIDLLGRGGHLQEAQEVIDQL 897

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D ++W++ L +C++H +E  G+  A  L+E+EP   + Y  +S+ ++  G +  + 
Sbjct: 898 PFRADGVIWATFLAACQMHKDEERGKVAAKKLVEMEPQRSSTYVFLSSLHAAAGNWVEAK 957

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
             RE    + + +  G S I V +
Sbjct: 958 VAREAMREKGVMKFPGCSWITVGN 981



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 151/550 (27%), Positives = 272/550 (49%), Gaps = 17/550 (3%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I      G L+ A+ L   +     V +N +IS   +     +   LY +M   G+  + 
Sbjct: 268 ISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTR 327

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           STF+S+LS  ++   + EG QIH   +  G   N+++GS L++LY++ G    A  +FD 
Sbjct: 328 STFASMLSAAASMTAFDEGQQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDF 387

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
             E+N+  WN ML  F +    +E ++M+  M+   +E +  +F  ++  C     LD G
Sbjct: 388 STEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIG 447

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H   IK   +D ++FVANA++D YS  G++  AK  F  IP  D +SWN+++   A 
Sbjct: 448 RQVHCITIK-NSMDADLFVANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAH 506

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            +   +A+ +  RM+     P   SF   +N  S       GKQIH     + ++  S H
Sbjct: 507 NEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATETGKQIH--CASIKYNVCSNH 564

Query: 351 -VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V S+L D+Y K   +ESS  V       S+   N+L+T L+ +    +A+E+F  ++ +
Sbjct: 565 AVGSSLIDLYSKFGDVESSRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKD 624

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHI 468
           G      T ++ L   +   S+ +G  + +H   +KS     + ++  SL+  Y +C  +
Sbjct: 625 GFKPSNFTFASILSGCTGPVSSVIG--KQVHSYTLKSALLNQDTSLGISLVGIYLKCKLL 682

Query: 469 ELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           E ++++  ++P   N+V +T+ ++GY++NG   ++L M   M    +  D+ TF  VL  
Sbjct: 683 EDANKLLAEVPDHKNLVEWTATISGYAQNGYSDQSLVMFWRMRSHDVRSDEATFASVLKA 742

Query: 528 CNHSGMVKEGQ----LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           C+    + +G+    L+  S    Y   A     S ++DM  + G +  + E+ ++    
Sbjct: 743 CSEIAALTDGKEIHGLIIKSGFVSYETAA-----SALMDMYSKCGDVISSFEIFKELKNK 797

Query: 584 GDCMMWSSLL 593
            + M W+S++
Sbjct: 798 QNIMPWNSMI 807



 Score =  195 bits (495), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 132/544 (24%), Positives = 258/544 (47%), Gaps = 41/544 (7%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D + K   +  A+++FD +   D + +  +I+G  +    +QAL L+  M   G     
Sbjct: 202 VDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQ 261

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T+ +++S  ++ G  ++   +  R+                                 +
Sbjct: 262 VTYVTIISTLASMGRLSDARTLLKRI---------------------------------Q 288

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P  +   WN ++ ++ +     EV  +Y  MK +G+ P   +F  M+   +     DEG
Sbjct: 289 MP--STVAWNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEG 346

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H+  +K G +D N+FV ++L++ Y   G + +AKK FDF    +++ WN+++  +  
Sbjct: 347 QQIHAAAVKHG-LDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQ 405

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            DL  + +++F  M+         +FV  L       ++  G+Q+H    K   D   + 
Sbjct: 406 NDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKNSMD-ADLF 464

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +A+ DMY K   I+ + A+F   PG+     N+L+  L H+   ++AV M   M   G
Sbjct: 465 VANAMLDMYSKLGAIDVAKALFSLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYG 524

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           I  DEV+ +T + A S   +   G  + +HC +IK    SN AV  SL+D YS+ G +E 
Sbjct: 525 IAPDEVSFATAINACSNIRATETG--KQIHCASIKYNVCSNHAVGSSLIDLYSKFGDVES 582

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           S +V   + + ++V   +++ G  +N    EA+++ + +++ G  P   TF  +L+GC  
Sbjct: 583 SRKVLAHVDASSMVPINALITGLVQNNREDEAIELFQQVLKDGFKPSNFTFASILSGCTG 642

Query: 531 SGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
                 G+ V + ++KS   ++ D      ++ +  +  +L+ A +LL + P   + + W
Sbjct: 643 PVSSVIGKQVHSYTLKSAL-LNQDTSLGISLVGIYLKCKLLEDANKLLAEVPDHKNLVEW 701

Query: 590 SSLL 593
           ++ +
Sbjct: 702 TATI 705



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 106/463 (22%), Positives = 219/463 (47%), Gaps = 42/463 (9%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           VLS CS  G   +G Q+HC VL  GF  + +  + LVD+Y +      A  +FD +   +
Sbjct: 166 VLSACSRLGALEQGRQVHCDVLKSGFCSSAFCQAGLVDMYAKCVEVKDARRVFDGIACPD 225

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
              W  M+  +  + R  + L ++++M+  G  P+ +++                     
Sbjct: 226 TICWASMIAGYHRVGRYQQALALFSRMEKMGSAPDQVTYV-------------------- 265

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
                            ++   ++ G L +A+     I +   ++WN+++S Y+   L  
Sbjct: 266 ----------------TIISTLASMGRLSDARTLLKRIQMPSTVAWNAVISSYSQSGLES 309

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +   L+  M+     P+  +F   L+ A+       G+QIH    K G D  +V V S+L
Sbjct: 310 EVFGLYKDMKRQGLMPTRSTFASMLSAAASMTAFDEGQQIHAAAVKHGLD-ANVFVGSSL 368

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            ++Y K   I  +  VF+ +  +++   N+++   + +   ++ ++MF +M    +  D+
Sbjct: 369 INLYVKHGCISDAKKVFDFSTEKNIVMWNAMLYGFVQNDLQEETIQMFQYMRRADLEADD 428

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T  + L A     S ++G  R +HC  IK+  ++++ V+ +++D YS+ G I+++  +F
Sbjct: 429 FTFVSVLGACINLDSLDIG--RQVHCITIKNSMDADLFVANAMLDMYSKLGAIDVAKALF 486

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
             IP  + V + +++ G + N    EA+ ML+ M   G+ PD+V+F   +  C++    +
Sbjct: 487 SLIPGKDSVSWNALIVGLAHNEEEEEAVYMLKRMKCYGIAPDEVSFATAINACSNIRATE 546

Query: 536 EGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            G+ +   S+K  Y + ++    S +ID+  + G ++ + ++L
Sbjct: 547 TGKQIHCASIK--YNVCSNHAVGSSLIDLYSKFGDVESSRKVL 587



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 210/471 (44%), Gaps = 56/471 (11%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMR---MGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           +H RVL LG  L   +G  LVDLY R   +G + RAL      P    A  + +L     
Sbjct: 78  LHARVLRLGLPLRGRLGDALVDLYGRSGRVGYAWRALGCCTGAPASGAAA-SSVLSCHAR 136

Query: 189 LSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
              P +VL  + +++   G  P+      ++  CS    L++G+Q+H  V+K G+   + 
Sbjct: 137 SGSPRDVLDAFQRLRCSIGGTPDQFGLAVVLSACSRLGALEQGRQVHCDVLKSGFCS-SA 195

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           F    LVD Y+ C  + +A++ FD I   D I W S+++ Y        AL LF RM+  
Sbjct: 196 FCQAGLVDMYAKCVEVKDARRVFDGIACPDTICWASMIAGYHRVGRYQQALALFSRMEKM 255

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   ++V  ++  +  G +   + +   +                         + S
Sbjct: 256 GSAPDQVTYVTIISTLASMGRLSDARTLLKRIQ------------------------MPS 291

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +VA             N++++S   SG   +   ++  M  +G+     T ++ L A + 
Sbjct: 292 TVA------------WNAVISSYSQSGLESEVFGLYKDMKRQGLMPTRSTFASMLSAAAS 339

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             + + G  + +H  A+K G ++N+ V  SL++ Y + G I  + +VF+     N+V + 
Sbjct: 340 MTAFDEG--QQIHAAAVKHGLDANVFVGSSLINLYVKHGCISDAKKVFDFSTEKNIVMWN 397

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-----N 542
           +++ G+ +N +  E + M + M +  L  D  TF+ VL  C +   +  G+ V      N
Sbjct: 398 AMLYGFVQNDLQEETIQMFQYMRRADLEADDFTFVSVLGACINLDSLDIGRQVHCITIKN 457

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           SM      DAD    + M+DM  + G +D A+ L    P G D + W++L+
Sbjct: 458 SM------DADLFVANAMLDMYSKLGAIDVAKALFSLIP-GKDSVSWNALI 501


>gi|225438700|ref|XP_002277701.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
            mitochondrial [Vitis vinifera]
          Length = 1008

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 178/666 (26%), Positives = 340/666 (51%), Gaps = 13/666 (1%)

Query: 1    MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQP---NPQLNIYSSNRTIDDFVKS 57
            ML   + P V T  ++ P C +         L ++      + QL++ ++   +  + K 
Sbjct: 348  MLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLDSQLSVATA--LLSMYAKL 405

Query: 58   GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
            G LNSA  +F +MP R+++++N +ISG G     + ++  + +M   G    A +  ++L
Sbjct: 406  GDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNIL 465

Query: 118  SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
            S CS       G   H       F  NL I + L+  Y   G    +  LF ++P RN  
Sbjct: 466  SACSKLEAILLGKAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAI 525

Query: 178  TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            +WN ++          + + + +KM+ E +E + ++   ++  C +   L +G  LH + 
Sbjct: 526  SWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVAENLIQGMTLHGYA 585

Query: 238  IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            IK G+   ++ + NAL+  Y  CG +   K  F+ +P   ++SWN++++ Y  + L  + 
Sbjct: 586  IKTGFA-CDVSLVNALISMYFNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEV 644

Query: 298  LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
            +  F +M    ++P+   +V  LN       +  GK IH +  + G       + ++L  
Sbjct: 645  MASFCQMIREGQKPN---YVTLLNLLPSCRTLLQGKSIHAFAVRTGVI-VETPIITSLIS 700

Query: 358  MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
            MY +   I S + +FE      +   N++M+  + + N K++V  F  ++   +  D +T
Sbjct: 701  MYARFENINSFIFLFEMGGKEDIALWNAIMSVYVQTKNAKESVTFFCELLHARVEPDYIT 760

Query: 418  LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
              + + A    +S NL +  + +   I+ GF+ +I +S +L+D ++RCG+I ++ ++FE 
Sbjct: 761  FLSLISACVQLSSLNLSNSVMAY--VIQKGFDKHIVISNALIDLFARCGNISIAKKIFEG 818

Query: 478  IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
            + S + V +++++NGY  +G    AL +L  M   G+ PD +T+  VL+ C+H G + +G
Sbjct: 819  LSSKDAVSWSTMINGYGLHGDSEAALALLSQMRLSGMKPDGITYASVLSACSHGGFIDQG 878

Query: 538  QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
             ++FNSM    G+    +HY+CM+D+LGR G L++A + +++ P      +  SLL +C 
Sbjct: 879  WMIFNSMVE-EGVPRRMEHYACMVDLLGRTGQLNEAYDFVEKLPCKPSVSLLESLLGACI 937

Query: 598  VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
            +HGN  +G +++++L EL+P +   Y  + N Y+  G +  + ++R     R+L +  G 
Sbjct: 938  IHGNVKLGEKISSLLFELDPKNSGSYVMLYNIYAAAGRWMDANRVRSDMEERQLRKIPGF 997

Query: 658  SLIEVN 663
            SL+E N
Sbjct: 998  SLVEGN 1003



 Score =  226 bits (577), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 151/539 (28%), Positives = 265/539 (49%), Gaps = 16/539 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+      +D + K+G +  A+ + D++   D+VT+N LISG       K+   +  ++ 
Sbjct: 189 NLVIQTALVDFYAKTGRMVKARLVLDKISQPDLVTWNALISGYSLNGFDKEVFEVLRQIN 248

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+K + STF+S++ +C+       G  IH  V+  GF  + ++   L+ +Y   G   
Sbjct: 249 EMGLKPNVSTFASIIPLCTRMKCLDIGKSIHGFVVKSGFSSDEFLTPALISMYAGGGNLF 308

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A DLFD   E+N+  WN M+ A+ +  +  E  +M+ +M    ++PN ++F  ++  C 
Sbjct: 309 IARDLFDSAAEKNVVIWNSMISAYAQNQKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCE 368

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  GK LH+HV+K   +D  + VA AL+  Y+  G L  A   F  +P  +++SWN
Sbjct: 369 NSANFWYGKSLHAHVMKYR-LDSQLSVATALLSMYAKLGDLNSADFIFYQMPRRNLLSWN 427

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S++S Y    L   +++ F  MQ     P   S V  L+  S+   +  GK  H +  + 
Sbjct: 428 SMISGYGHNGLWEASMDAFCDMQFEGFDPDAISIVNILSACSKLEAILLGKAAHAFSFRK 487

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            FD  ++++ +AL   Y  C  + SS  +F+  P R+    N+L++  +H+G+ K AV +
Sbjct: 488 EFD-SNLNISNALLAFYSDCGKLSSSFKLFQKMPLRNAISWNTLISGCVHNGDTKKAVAL 546

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
              M  E + LD VTL + +    V  + NL     LH  AIK+GF  ++++  +L+  Y
Sbjct: 547 LHKMQQEKMELDLVTLISIIPICRV--AENLIQGMTLHGYAIKTGFACDVSLVNALISMY 604

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
             CG I     +FE +P  ++V + +++ GY  + +  E +     MI+ G  P+ VT L
Sbjct: 605 FNCGDINAGKFLFEVMPWRSIVSWNALITGYRFHYLQNEVMASFCQMIREGQKPNYVTLL 664

Query: 523 CVLAGCN--------HSGMVKEGQLV----FNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
            +L  C         H+  V+ G +V      S+ S+Y    +   +  + +M G+  I
Sbjct: 665 NLLPSCRTLLQGKSIHAFAVRTGVIVETPIITSLISMYARFENINSFIFLFEMGGKEDI 723



 Score =  203 bits (517), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 134/496 (27%), Positives = 246/496 (49%), Gaps = 8/496 (1%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TF  V+  C+  G       +HC VL   F  NL I + LVD Y + G  V+A  + D++
Sbjct: 157 TFPFVIKACTALGAVWIAEGVHCIVLRTSFEENLVIQTALVDFYAKTGRMVKARLVLDKI 216

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            + +L TWN ++  +       EV  +  ++   G++PN  +F  ++  C+    LD GK
Sbjct: 217 SQPDLVTWNALISGYSLNGFDKEVFEVLRQINEMGLKPNVSTFASIIPLCTRMKCLDIGK 276

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +H  V+K G+   + F+  AL+  Y+  G+L  A+  FD     +V+ WNS++S YA  
Sbjct: 277 SIHGFVVKSGF-SSDEFLTPALISMYAGGGNLFIARDLFDSAAEKNVVIWNSMISAYAQN 335

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               +A ++F +M     +P++ +FV  +     + N ++GK +H +V K   D   + V
Sbjct: 336 QKSSEAFKMFQQMLKANMQPNVVTFVSIIPCCENSANFWYGKSLHAHVMKYRLD-SQLSV 394

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +AL  MY K   + S+  +F   P R+L   NS+++   H+G  + +++ F  M  EG 
Sbjct: 395 ATALLSMYAKLGDLNSADFIFYQMPRRNLLSWNSMISGYGHNGLWEASMDAFCDMQFEGF 454

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D +++   L A S   +  LG  +  H  + +  F+SN+ +S +L+  YS CG +  S
Sbjct: 455 DPDAISIVNILSACSKLEAILLG--KAAHAFSFRKEFDSNLNISNALLAFYSDCGKLSSS 512

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            ++F+K+P  N + + ++++G   NG  ++A+ +L  M Q  +  D VT + ++  C  +
Sbjct: 513 FKLFQKMPLRNAISWNTLISGCVHNGDTKKAVALLHKMQQEKMELDLVTLISIIPICRVA 572

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
             + +G +  +      G   D    + +I M    G ++  + L +  P     + W++
Sbjct: 573 ENLIQG-MTLHGYAIKTGFACDVSLVNALISMYFNCGDINAGKFLFEVMP-WRSIVSWNA 630

Query: 592 LLRSCRVH--GNEIIG 605
           L+   R H   NE++ 
Sbjct: 631 LITGYRFHYLQNEVMA 646


>gi|15225445|ref|NP_178983.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206168|sp|Q9SIT7.1|PP151_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g13600
 gi|4558664|gb|AAD22682.1| hypothetical protein [Arabidopsis thaliana]
 gi|330251150|gb|AEC06244.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 697

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 174/621 (28%), Positives = 315/621 (50%), Gaps = 68/621 (10%)

Query: 110 ASTFSSVLSVCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +S F+ +L  C  +      ++ +H  V+  GF   ++I + L+D Y + G       +F
Sbjct: 19  SSPFAKLLDSCIKSKLSAIYVRYVHASVIKSGFSNEIFIQNRLIDAYSKCGSLEDGRQVF 78

Query: 169 DELPERNL-------------------------------ATWNLMLRAFCELSRPDEVLR 197
           D++P+RN+                                TWN M+  F +  R +E L 
Sbjct: 79  DKMPQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALC 138

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
            +  M  EG   N  SF  ++  CS    +++G Q+HS + K  ++  ++++ +ALVD Y
Sbjct: 139 YFAMMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLS-DVYIGSALVDMY 197

Query: 258 SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
           S CG++ +A++ FD +   +V+SWNS+++ +       +AL++F  M   R  P   +  
Sbjct: 198 SKCGNVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLA 257

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP- 376
             ++  +    +  G+++HG V K       + + +A  DMY KC+ I+ +  +F+S P 
Sbjct: 258 SVISACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317

Query: 377 ------------------------------GRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
                                          R++   N+L+     +G  ++A+ +F  +
Sbjct: 318 RNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLL 377

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCR----LLHCCAIKSGFESNIAVSCSLMDAY 462
             E +     + +  LKA +  A  +LG       L H    +SG E +I V  SL+D Y
Sbjct: 378 KRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMY 437

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG +E  + VF K+   + V + +++ G+++NG G EAL++   M++ G  PD +T +
Sbjct: 438 VKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMI 497

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C H+G V+EG+  F+SM   +G+   R HY+CM+D+LGRAG L++A+ ++++ P 
Sbjct: 498 GVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEMPM 557

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D ++W SLL +C+VH N  +G+ VA  L+E+EP +   Y  +SN Y+E+G++E  M +
Sbjct: 558 QPDSVIWGSLLAACKVHRNITLGKYVAEKLLEVEPSNSGPYVLLSNMYAELGKWEDVMNV 617

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R++     +T+  G S I++ 
Sbjct: 618 RKSMRKEGVTKQPGCSWIKIQ 638



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 131/494 (26%), Positives = 227/494 (45%), Gaps = 50/494 (10%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ NIY+ N  +    K G L+ A  LF  MP RD  T+N ++SG  +    ++AL  + 
Sbjct: 82  PQRNIYTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALCYFA 141

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G   +  +F+SVLS CS      +G+Q+H  +    F  ++YIGS LVD+Y + G
Sbjct: 142 MMHKEGFVLNEYSFASVLSACSGLNDMNKGVQVHSLIAKSPFLSDVYIGSALVDMYSKCG 201

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FDE+ +RN+ +WN ++  F +     E L ++  M    VEP+ ++   ++ 
Sbjct: 202 NVNDAQRVFDEMGDRNVVSWNSLITCFEQNGPAVEALDVFQMMLESRVEPDEVTLASVIS 261

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    +  G+++H  V+K   +  +I ++NA VD Y+ C  + EA+  FD +P+ +VI
Sbjct: 262 ACASLSAIKVGQEVHGRVVKNDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 280 -------------------------------SWNSIVSIYADYDLIFDALELFFRMQLCR 308
                                          SWN++++ Y       +AL LF  ++   
Sbjct: 322 AETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-----DHGSVHVQSALTDMYGKCN 363
             P+  SF   L   +    ++ G Q H +V K GF     +   + V ++L DMY KC 
Sbjct: 382 VCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +E    VF     R     N+++     +G   +A+E+F  M++ G   D +T+   L 
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHITMIGVLS 501

Query: 424 ALSVSASANLGS------CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           A   +     G        R      ++  +      +C ++D   R G +E +  + E+
Sbjct: 502 ACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY------TC-MVDLLGRAGFLEEAKSMIEE 554

Query: 478 IP-SPNVVCFTSIM 490
           +P  P+ V + S++
Sbjct: 555 MPMQPDSVIWGSLL 568



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 58/254 (22%), Positives = 124/254 (48%), Gaps = 7/254 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N+ +    I  +  +    +A+ +F +M  R++V++N LI+G  +    ++AL L+ 
Sbjct: 316 PIRNVIAETSMISGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL------NLYIGSPLVD 153
            +    +  +  +F+++L  C++      G+Q H  VL  GF        ++++G+ L+D
Sbjct: 376 LLKRESVCPTHYSFANILKACADLAELHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y++ G       +F ++ ER+  +WN M+  F +    +E L ++ +M   G +P+ ++
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLESGEKPDHIT 495

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++  C     ++EG+   S + +   V         +VD     G L EAK   + +
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSMIEEM 555

Query: 274 PVD-DVISWNSIVS 286
           P+  D + W S+++
Sbjct: 556 PMQPDSVIWGSLLA 569



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 56/182 (30%), Positives = 88/182 (48%), Gaps = 16/182 (8%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q   + +I+  N  ID +VK G +     +F +M  RD V++N +I G  +  +  +AL 
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL----- 151
           L+ EM+  G K    T   VLS C +AGF  EG + +   ++  FG+     +PL     
Sbjct: 480 LFREMLESGEKPDHITMIGVLSACGHAGFVEEG-RHYFSSMTRDFGV-----APLRDHYT 533

Query: 152 --VDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
             VDL  R G    A  + +E+P + +   W  +L A C++ R +  L  Y   K   VE
Sbjct: 534 CMVDLLGRAGFLEEAKSMIEEMPMQPDSVIWGSLLAA-CKVHR-NITLGKYVAEKLLEVE 591

Query: 209 PN 210
           P+
Sbjct: 592 PS 593


>gi|334185294|ref|NP_187883.2| mitochondrial editing factor 22 [Arabidopsis thaliana]
 gi|75274142|sp|Q9LTV8.1|PP224_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g12770
 gi|11994419|dbj|BAB02421.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332641723|gb|AEE75244.1| mitochondrial editing factor 22 [Arabidopsis thaliana]
          Length = 694

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/537 (29%), Positives = 299/537 (55%), Gaps = 13/537 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH R+L LG   + ++ + L+      G    A  +FD+LP   +  WN ++R +   +
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + L MY+ M+   V P+  +F ++++ CS    L  G+ +H+ V +LG+ D ++FV 
Sbjct: 99  HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGF-DADVFVQ 157

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           N L+  Y+ C  L  A+  F+ +P+ +  ++SW +IVS YA      +ALE+F +M+   
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQMRKMD 217

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P   + V  LN  +   ++  G+ IH  V K+G +     +  +L  MY KC  + ++
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE-IEPDLLISLNTMYAKCGQVATA 276

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F+     +L   N++++    +G  ++A++MF  M+++ +  D +++++     ++S
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS-----AIS 331

Query: 429 ASANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           A A +GS    R ++    +S +  ++ +S +L+D +++CG +E +  VF++    +VV 
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +++++ GY  +G  REA+ +   M + G+ P+ VTFL +L  CNHSGMV+EG   FN M 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             + I+  +QHY+C+ID+LGRAG LD+A E+++  P      +W +LL +C+ H +  +G
Sbjct: 452 D-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
              A  L  ++P +   Y Q+SN Y+    ++   ++R     + L +D+G S +EV
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 215/438 (49%), Gaps = 7/438 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G +  A+++FD++P   +  +N +I G  +  H + AL +Y  M    +   + TF  +L
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD--ELPERN 175
             CS       G  +H +V  LGF  ++++ + L+ LY +      A  +F+   LPER 
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           + +W  ++ A+ +   P E L ++++M+   V+P+ ++   ++   +    L +G+ +H+
Sbjct: 187 IVSWTAIVSAYAQNGEPMEALEIFSQMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            V+K+G +++   +  +L   Y+ CG +  AK  FD +   ++I WN+++S YA      
Sbjct: 247 SVVKMG-LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAR 305

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +A+++F  M     RP   S    ++  ++ G++   + ++ YV +  +    V + SAL
Sbjct: 306 EAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY-RDDVFISSAL 364

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DM+ KC  +E +  VF+    R +   ++++      G  ++A+ ++  M   G+  ++
Sbjct: 365 IDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPND 424

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VT    L A + S     G          K   +     +C ++D   R GH++ +++V 
Sbjct: 425 VTFLGLLMACNHSGMVREGWWFFNRMADHKINPQQQ-HYAC-VIDLLGRAGHLDQAYEVI 482

Query: 476 EKIP-SPNVVCFTSIMNG 492
           + +P  P V  + ++++ 
Sbjct: 483 KCMPVQPGVTVWGALLSA 500



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 159/336 (47%), Gaps = 4/336 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFD--EMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +++  N  I  + K   L SA+ +F+   +P R +V++  ++S   +   P +AL ++ +
Sbjct: 153 DVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSQ 212

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +K       SVL+  +      +G  IH  V+ +G  +   +   L  +Y + G 
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD++   NL  WN M+  + +     E + M+++M  + V P+ +S    +  
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISA 332

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L++ + ++ +V +  + D ++F+++AL+D ++ CGS+  A+  FD     DV+ 
Sbjct: 333 CAQVGSLEQARSMYEYVGRSDYRD-DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W++++  Y  +    +A+ L+  M+     P+  +F+  L   + +G V  G      + 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNRMA 451

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
               +    H  + + D+ G+   ++ +  V +  P
Sbjct: 452 DHKINPQQQHY-ACVIDLLGRAGHLDQAYEVIKCMP 486



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 118/244 (48%), Gaps = 22/244 (9%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G + +AK LFD+M + +++ +N +ISG  K  + ++A+ ++ EM++  ++    + 
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +S +S C+  G   +   ++  V    +  +++I S L+D++ + G    A  +FD   +
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLD 386

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++  W+ M+  +    R  E + +Y  M+  GV PN ++F  ++  C+           
Sbjct: 387 RDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN----------- 435

Query: 234 HSHVIKLGWVDVNIFVANAL----------VDFYSACGSLIEAKKSFDFIPVDD-VISWN 282
           HS +++ GW   N    + +          +D     G L +A +    +PV   V  W 
Sbjct: 436 HSGMVREGWWFFNRMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWG 495

Query: 283 SIVS 286
           +++S
Sbjct: 496 ALLS 499



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 1/163 (0%)

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           S +  A  + ++ +    + +H   +  G + +  +   L+ A S  G I  + QVF+ +
Sbjct: 20  SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           P P +  + +I+ GYSRN   ++AL M   M    + PD  TF  +L  C+    ++ G+
Sbjct: 80  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
            V   +  + G DAD    + +I +  +   L  A  + +  P
Sbjct: 140 FVHAQVFRL-GFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181


>gi|242035545|ref|XP_002465167.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
 gi|241919021|gb|EER92165.1| hypothetical protein SORBIDRAFT_01g033280 [Sorghum bicolor]
          Length = 564

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 165/506 (32%), Positives = 277/506 (54%), Gaps = 18/506 (3%)

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPS 161
           +H ++  + TF  ++             Q H   L LG    N++    LV  Y+R G  
Sbjct: 62  AHPLRPDSFTFPPLVRAAPGP---ASAAQFHACALRLGLLHPNVFASGSLVHAYLRFGRV 118

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FDE+PER++  WN ML   C  +R  + + ++ +M  EGV  + ++   ++  C
Sbjct: 119 AEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMVGEGVAGDAVTLSSVLPMC 178

Query: 222 SIGMLLDEGKQL--HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
              +L D    L  H + +K G +   +FV NAL+D Y   G L+EA+  F  + + D++
Sbjct: 179 V--LLGDRALALVMHVYAVKRG-LSGELFVCNALIDVYGKLGMLVEARWVFGGMALRDLV 235

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WNSI+S Y     +  A+ELF  M      P + + V   +  ++ G+    K +H YV
Sbjct: 236 TWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSLASAVAQCGDERGAKSVHCYV 295

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + G+D G +   +A+ DMY K + I+++  VF++ P R +   N+L+T  + +G   +A
Sbjct: 296 RRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVSWNTLITGYMQNGLSNEA 355

Query: 400 VEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVS 455
           V ++  M + EG+   + T  + L A S     NLG+ +    +H  +IK+G   ++ VS
Sbjct: 356 VRIYNDMQNHEGLKPIQGTFVSILPAYS-----NLGALQQGMRMHALSIKTGLNLDVYVS 410

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             L+D Y++CG +  +  +FE +P  +   + +I+ G   +G G +AL++   M Q G+ 
Sbjct: 411 TCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIK 470

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD VTF+ +LA C+H+G+V +G+  F+ M++VYGI    +HY+CM+DMLGRAG LD+A E
Sbjct: 471 PDNVTFVSLLAACSHAGLVDQGRSFFDLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFE 530

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGN 601
            +Q  P   D  +W +LL +CR+HGN
Sbjct: 531 FIQGMPIKPDSAVWGALLGACRIHGN 556



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 196/387 (50%), Gaps = 6/387 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+++S   +  +++ G +  A ++FDEMP RD+  +N ++SG  +      A+ L+  MV
Sbjct: 101 NVFASGSLVHAYLRFGRVAEAYRVFDEMPERDVPAWNAMLSGLCRNARAVDAVALFGRMV 160

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+   A T SSVL +C   G     + +H   +  G    L++ + L+D+Y ++G  V
Sbjct: 161 GEGVAGDAVTLSSVLPMCVLLGDRALALVMHVYAVKRGLSGELFVCNALIDVYGKLGMLV 220

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  +  R+L TWN ++ A+ +  +    + +++ M   GV P+ L+   +    +
Sbjct: 221 EARWVFGGMALRDLVTWNSIISAYEQGGKVAAAVELFHGMMKSGVSPDVLTLVSL--ASA 278

Query: 223 IGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           +    DE   K +H +V + GW   +I   NA+VD Y+    +  A+  FD +P  DV+S
Sbjct: 279 VAQCGDERGAKSVHCYVRRRGWDVGDIIAGNAVVDMYAKLSKIDAAQMVFDNLPDRDVVS 338

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           WN++++ Y    L  +A+ ++  MQ     +P   +FV  L   S  G +  G ++H   
Sbjct: 339 WNTLITGYMQNGLSNEAVRIYNDMQNHEGLKPIQGTFVSILPAYSNLGALQQGMRMHALS 398

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G +   V+V + L D+Y KC  +  ++ +FE  P RS    N+++  L   G+   A
Sbjct: 399 IKTGLNL-DVYVSTCLIDLYAKCGKLVEAMLLFEHMPRRSTGPWNAIIAGLGVHGHGAKA 457

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALS 426
           + +F  M  EGI  D VT  + L A S
Sbjct: 458 LNLFSQMQQEGIKPDNVTFVSLLAACS 484



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 54/198 (27%), Positives = 92/198 (46%), Gaps = 6/198 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L P   T  ++ P  +++  L   + + +   +    L++Y S   ID + K G L  A 
Sbjct: 368 LKPIQGTFVSILPAYSNLGALQQGMRMHALSIKTGLNLDVYVSTCLIDLYAKCGKLVEAM 427

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            LF+ MP R    +N +I+G G   H  +AL L+ +M   GIK    TF S+L+ CS+AG
Sbjct: 428 LLFEHMPRRSTGPWNAIIAGLGVHGHGAKALNLFSQMQQEGIKPDNVTFVSLLAACSHAG 487

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ERNLATWNL 181
              +G      ++   +G+       + +VD+  R G    A +    +P + + A W  
Sbjct: 488 LVDQGRSFF-DLMQTVYGIVPIAKHYACMVDMLGRAGQLDEAFEFIQGMPIKPDSAVWGA 546

Query: 182 MLRAFCELSRPDEVLRMY 199
           +L A C +    E+  +Y
Sbjct: 547 LLGA-CRIHGNVELAAIY 563


>gi|255559826|ref|XP_002520932.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539898|gb|EEF41477.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 757

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 182/621 (29%), Positives = 329/621 (52%), Gaps = 10/621 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ++ ++K G L++A  +FD M +RD V++N+LI GC  +    + L+ +      G +
Sbjct: 103 NSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGALVEGLWQFINARVAGFE 162

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            + ST   ++  C +     EG+Q+H  ++  G   +  + +  + +Y  +     A  L
Sbjct: 163 PNISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWSVQNSFLCMYADVDMDC-ARIL 221

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGML 226
           FDE+PE+++ +W+ M+  + +       L+++ KM +   + P+G+    +++ C+  + 
Sbjct: 222 FDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRITPDGVILVSVLKACANSVN 281

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +  G+ +H   I  G +D ++FV N+L+D YS C     A + F  +P  + +SWNS++S
Sbjct: 282 ITMGRLVHGLTICRG-LDSDLFVKNSLIDMYSKCKDAGSAFEVFSEMPRRNNVSWNSLLS 340

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
                    +AL L + M+         + V  L       + Y  K +H    + G + 
Sbjct: 341 GLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICKYFAHPYHCKAVHCATIRRGCES 400

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             + V ++L D Y KCN+IE +  VF     R +   ++++    H G   +A+ +F  M
Sbjct: 401 NEI-VLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTMIAGFAHCGKPDEAIAVFQKM 459

Query: 407 VDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
            +EGI + + VT+   L+A SVSA   L      H  AI+ G  + +AV  +++D YS+C
Sbjct: 460 -NEGIEVPNAVTIINLLQACSVSA--ELKRSMWAHGAAIRRGLAAEVAVGTAIVDMYSKC 516

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G IE S + F +IP  N++ +++++  Y  NG+  EAL +L  M    + P+ +T+L VL
Sbjct: 517 GEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHEALALLAQMKSHEIKPNALTYLSVL 576

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG-- 583
             C+H G+V+ G  VF SM   +G+D + +HYSCM+DML RAG LD A EL++  P    
Sbjct: 577 TACSHGGLVEMGLSVFKSMIQDHGVDPEFEHYSCMVDMLSRAGKLDDAMELIRMMPETFR 636

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W +LL +CR + +  +G +    ++ELEP++ A Y   S+ Y+  G ++ + +++
Sbjct: 637 AGASVWGALLSACRTYRSSTLGEKAVYQVLELEPLNLAGYLLASSMYASDGLWDNAARMK 696

Query: 644 ETALARKLTRDIGHSLIEVNS 664
             A  R +    G+S++ V+S
Sbjct: 697 LLARERGVRAVAGYSIVHVDS 717



 Score =  187 bits (475), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 140/531 (26%), Positives = 255/531 (48%), Gaps = 14/531 (2%)

Query: 75  MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE---SASTFSSVLSVCSNAGFYTEGIQ 131
           ++++ L I          + +  Y E+ + GI       + F  VL  CS    Y +G  
Sbjct: 27  LLSWTLRIKELSSNEKWHEVISQYYEITNAGISHHLLDVTLFPPVLKACSYLS-YIDGKC 85

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H  ++   F     IG+ +++ Y++ G    A+ +FD +  R+  +WN+++    +   
Sbjct: 86  LHACLIKTAFDSFTSIGNSILNFYIKCGELDTAVSVFDSMRSRDSVSWNVLIHGCLDYGA 145

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG-WVDVNIFVA 250
             E L  +   +  G EPN  +   +V+ C       EG QLH ++I+ G W   +  V 
Sbjct: 146 LVEGLWQFINARVAGFEPNISTLVLLVQACRSLRAKQEGLQLHGYLIQSGLWASWS--VQ 203

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRK 309
           N+ +  Y+    +  A+  FD +P  DVISW++++  Y  Y      L++F +M    R 
Sbjct: 204 NSFLCMYADV-DMDCARILFDEMPEKDVISWSAMIGGYVQYLEDQIGLQIFQKMLSTSRI 262

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P     V  L   + + N+  G+ +HG     G D   + V+++L DMY KC    S+ 
Sbjct: 263 TPDGVILVSVLKACANSVNITMGRLVHGLTICRGLD-SDLFVKNSLIDMYSKCKDAGSAF 321

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            VF   P R+    NSL++ L+ +    +A+ +   M  EGI  DEVTL   L+     A
Sbjct: 322 EVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCLQICKYFA 381

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
                 C+ +HC  I+ G ESN  V  SL+DAY++C  IEL+ +VF +    +VV ++++
Sbjct: 382 HPY--HCKAVHCATIRRGCESNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRDVVLWSTM 439

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + G++  G   EA+ + + M +   +P+ VT + +L  C+ S  +K       +     G
Sbjct: 440 IAGFAHCGKPDEAIAVFQKMNEGIEVPNAVTIINLLQACSVSAELKRSMWAHGAAIR-RG 498

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + A+    + ++DM  + G ++ + +   Q P   + + WS+++ +  ++G
Sbjct: 499 LAAEVAVGTAIVDMYSKCGEIEASRKAFNQIP-QKNIITWSTMIAAYGMNG 548



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/419 (24%), Positives = 192/419 (45%), Gaps = 23/419 (5%)

Query: 1   MLST-KLLPRVRTITTLAPTCTSIVPLSSSLLLD--SYCQPNPQLNIYSSNRTIDDFVKS 57
           MLST ++ P    + ++   C + V ++   L+   + C+     +++  N  ID + K 
Sbjct: 256 MLSTSRITPDGVILVSVLKACANSVNITMGRLVHGLTICR-GLDSDLFVKNSLIDMYSKC 314

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
               SA ++F EMP R+ V++N L+SG    +   +AL L   M + GI+    T  + L
Sbjct: 315 KDAGSAFEVFSEMPRRNNVSWNSLLSGLILNKKYSEALLLVYSMRTEGIEADEVTLVNCL 374

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
            +C           +HC  +  G   N  + + L+D Y +      A ++F     R++ 
Sbjct: 375 QICKYFAHPYHCKAVHCATIRRGCESNEIVLNSLIDAYAKCNLIELAWEVFSRTRRRDVV 434

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            W+ M+  F    +PDE + ++ KM  EG+E PN ++   +++ CS+   L      H  
Sbjct: 435 LWSTMIAGFAHCGKPDEAIAVFQKMN-EGIEVPNAVTIINLLQACSVSAELKRSMWAHGA 493

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
            I+ G +   + V  A+VD YS CG +  ++K+F+ IP  ++I+W+++++ Y    L  +
Sbjct: 494 AIRRG-LAAEVAVGTAIVDMYSKCGEIEASRKAFNQIPQKNIITWSTMIAAYGMNGLAHE 552

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQS 353
           AL L  +M+    +P+  +++  L   S  G V  G  +   + +   DHG        S
Sbjct: 553 ALALLAQMKSHEIKPNALTYLSVLTACSHGGLVEMGLSVFKSMIQ---DHGVDPEFEHYS 609

Query: 354 ALTDMYGKCNVIESSVAVFESAP----------GRSLECCNSLMTSLLHSGNIKDAVEM 402
            + DM  +   ++ ++ +    P          G  L  C +  +S L    +   +E+
Sbjct: 610 CMVDMLSRAGKLDDAMELIRMMPETFRAGASVWGALLSACRTYRSSTLGEKAVYQVLEL 668


>gi|225433177|ref|XP_002281549.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130 [Vitis vinifera]
 gi|296083673|emb|CBI23662.3| unnamed protein product [Vitis vinifera]
          Length = 685

 Score =  290 bits (743), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 161/555 (29%), Positives = 301/555 (54%), Gaps = 8/555 (1%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            + +L  CS  G + +G+Q+H   +++GFG +L + + L+D+Y +      A  +FD + 
Sbjct: 7   LAKLLRNCSKNGLFDQGLQVHAAAVNMGFGFDLIMNNDLIDMYGKCSRVDLACSVFDRML 66

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           ERN+ +W  ++  + +       L +  +M   GV+PN  +F   ++ C    +++ G Q
Sbjct: 67  ERNVVSWTALMCGYLQEGNAKGSLALLCEMGYSGVKPNEFTFSTSLKACGALGVVENGMQ 126

Query: 233 LHSHVIKLG--WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +H   +K G  WV V   V NA +D YS CG +  A++ F+ +P  +++SWN++++ +  
Sbjct: 127 IHGMCVKSGFEWVSV---VGNATIDMYSKCGRIGMAEQVFNKMPFRNLVSWNAMIAGHTH 183

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                 +L LF RMQ   + P   +F   L      G +  G QIH  +   GF     +
Sbjct: 184 EGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKACGALGAIRGGTQIHASLITRGFPISIRN 243

Query: 351 V-QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
           +  SA+ D+Y KC  +  +  VF+    ++L   ++L+      GN+ +A+++F  + + 
Sbjct: 244 IIASAIVDLYAKCGYLFEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRES 303

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
              +D   LS  +   +  A    G  + +HC  +K     +I+V+ S++D Y +CG  E
Sbjct: 304 VSNVDGFVLSIMMGVFADLALVEQG--KQMHCYILKVPSGLDISVANSIIDMYLKCGLTE 361

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            + ++F ++   NVV +T ++ GY ++G+G +A+ +   M   G+  D+V +L +L+ C+
Sbjct: 362 EAERLFSEMQVRNVVSWTVMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACS 421

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           HSG+++E Q  F+ + + + +  + +HY+CM+D+LGRAG L +A+ L++      +  +W
Sbjct: 422 HSGLIRESQEYFSRLCNNHQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGIW 481

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +CRVHGN  IGR V  IL  ++  +   Y  +SN Y+E G ++   ++R+   A+
Sbjct: 482 QTLLSACRVHGNLEIGREVGEILFRMDTDNPVNYVMMSNIYAEAGYWKECERVRKLVKAK 541

Query: 650 KLTRDIGHSLIEVNS 664
            L ++ G S +E+N 
Sbjct: 542 GLKKEAGQSWVEINK 556



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 127/474 (26%), Positives = 230/474 (48%), Gaps = 15/474 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
            ++  +N  ID + K   ++ A  +FD M  R++V++  L+ G  +  + K +L L  EM
Sbjct: 37  FDLIMNNDLIDMYGKCSRVDLACSVFDRMLERNVVSWTALMCGYLQEGNAKGSLALLCEM 96

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G+K +  TFS+ L  C   G    G+QIH   +  GF     +G+  +D+Y + G  
Sbjct: 97  GYSGVKPNEFTFSTSLKACGALGVVENGMQIHGMCVKSGFEWVSVVGNATIDMYSKCGRI 156

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F+++P RNL +WN M+          + L ++ +M+ +G  P+  +F   ++ C
Sbjct: 157 GMAEQVFNKMPFRNLVSWNAMIAGHTHEGNGRKSLVLFQRMQGQGEVPDEFTFTSTLKAC 216

Query: 222 SIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                +  G Q+H+ +I  G+ + +   +A+A+VD Y+ CG L EA+K FD I   ++IS
Sbjct: 217 GALGAIRGGTQIHASLITRGFPISIRNIIASAIVDLYAKCGYLFEAQKVFDRIEQKNLIS 276

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE--FLNFASRTGNVYFGKQIHGY 338
           W++++  +A    + +A++LF   QL     ++  FV    +   +    V  GKQ+H Y
Sbjct: 277 WSALIQGFAQEGNLLEAMDLF--RQLRESVSNVDGFVLSIMMGVFADLALVEQGKQMHCY 334

Query: 339 VTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           + K+  G D   + V +++ DMY KC + E +  +F     R++     ++T     G  
Sbjct: 335 ILKVPSGLD---ISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWTVMITGYGKHGLG 391

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + A+ +F  M  +GI LDEV     L A S S             C      + NI    
Sbjct: 392 EKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCN-NHQMKPNIEHYA 450

Query: 457 SLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDML 506
            ++D   R G ++ +  + E +   PN   + ++++    +G   +GRE  ++L
Sbjct: 451 CMVDILGRAGQLKEAKNLIENMKLKPNEGIWQTLLSACRVHGNLEIGREVGEIL 504



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 68/310 (21%), Positives = 157/310 (50%), Gaps = 17/310 (5%)

Query: 7   LPRVRTITTLAPTCTSI------VPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           +P   T T+    C ++        + +SL+   +  P    NI +S   +D + K G+L
Sbjct: 203 VPDEFTFTSTLKACGALGAIRGGTQIHASLITRGF--PISIRNIIAS-AIVDLYAKCGYL 259

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A+K+FD +  +++++++ LI G  +  +  +A+ L+ ++            S ++ V 
Sbjct: 260 FEAQKVFDRIEQKNLISWSALIQGFAQEGNLLEAMDLFRQLRESVSNVDGFVLSIMMGVF 319

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           ++     +G Q+HC +L +  GL++ + + ++D+Y++ G +  A  LF E+  RN+ +W 
Sbjct: 320 ADLALVEQGKQMHCYILKVPSGLDISVANSIIDMYLKCGLTEEAERLFSEMQVRNVVSWT 379

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
           +M+  + +    ++ + ++N+M+ +G+E + +++  ++  CS   L+ E ++  S +   
Sbjct: 380 VMITGYGKHGLGEKAIHLFNRMQLDGIELDEVAYLALLSACSHSGLIRESQEYFSRLCNN 439

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAK---KSFDFIPVDDVISWNSIVS---IYADYDLI 294
             +  NI     +VD     G L EAK   ++    P + +  W +++S   ++ + ++ 
Sbjct: 440 HQMKPNIEHYACMVDILGRAGQLKEAKNLIENMKLKPNEGI--WQTLLSACRVHGNLEIG 497

Query: 295 FDALELFFRM 304
            +  E+ FRM
Sbjct: 498 REVGEILFRM 507


>gi|359482004|ref|XP_002276764.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At2g01510-like [Vitis vinifera]
          Length = 681

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 167/539 (30%), Positives = 289/539 (53%), Gaps = 13/539 (2%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G Q+H  ++  G+    ++ + LV++Y + G    AL LFD +P+RNL +W  M+    +
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
            S+  E +R +  M+  G  P   +F   +R C+    ++ GKQ+H   +K G +   +F
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFG-IGSELF 142

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V + L D YS CG++ +A K F+ +P  D +SW +++  Y+      +AL  F +M    
Sbjct: 143 VGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
                      L          FG+ +H  V KLGF+   + V +ALTDMY K   +ES+
Sbjct: 203 VTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE-SDIFVGNALTDMYSKAGDMESA 261

Query: 369 VAVFESAPGRSLECCN-----SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
             VF    G   EC N      L+   + +  I+  + +F  +  +GI  +E T S+ +K
Sbjct: 262 SNVF----GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIK 317

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A +  A+   G+   LH   +K  F+ +  VS  L+D Y +CG +E + Q F++I  P  
Sbjct: 318 ACANQAALEQGT--QLHAQVMKINFDEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTE 375

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           + + S+++ + ++G+G++A+ + E M+ RG+ P+ +TF+ +L GC+H+G+V+EG   F S
Sbjct: 376 IAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYS 435

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M   YG+    +HYSC+ID+LGRAG L +A+E + + P   +   W S L +CR+HG++ 
Sbjct: 436 MDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKE 495

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           +G+  A  L++LEP +      +SN Y+   ++E    +R       + +  G+S ++V
Sbjct: 496 MGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 218/467 (46%), Gaps = 8/467 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           + +N  ++ + K G L+ A KLFD MP R++V++  +ISG  +     +A+  +  M   
Sbjct: 41  FLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRIC 100

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G   +   FSS +  C++ G    G Q+HC  L  G G  L++GS L D+Y + G    A
Sbjct: 101 GEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDA 160

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F+E+P ++  +W  M+  + ++   +E L  + KM  E V  +    C  +  C   
Sbjct: 161 CKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGAL 220

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF-IPVDDVISWNS 283
                G+ +HS V+KLG+ + +IFV NAL D YS  G +  A   F       +V+S+  
Sbjct: 221 KACKFGRSVHSSVVKLGF-ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTC 279

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++  Y + + I   L +F  ++     P+  +F   +   +    +  G Q+H  V K+ 
Sbjct: 280 LIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKIN 339

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           FD     V S L DMYGKC ++E ++  F+     +    NSL++     G  KDA+++F
Sbjct: 340 FDEDPF-VSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIF 398

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             MVD G+  + +T  + L   S +     G                    SC ++D   
Sbjct: 399 ERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC-VIDLLG 457

Query: 464 RCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDML 506
           R G ++ + +   ++P  PN   + S +     +G   MG+ A + L
Sbjct: 458 RAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKL 504


>gi|125555495|gb|EAZ01101.1| hypothetical protein OsI_23130 [Oryza sativa Indica Group]
          Length = 766

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 185/641 (28%), Positives = 328/641 (51%), Gaps = 14/641 (2%)

Query: 30  LLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK 87
           L+  S   P+ QL  N    N  I  + +    +SA+++FDEMPAR+ V++  +I+   +
Sbjct: 70  LVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSARQVFDEMPARNPVSWASVIAAHVQ 129

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
                 AL L+  M+  G         S +  C+  G    G Q+H   L    G +L +
Sbjct: 130 NGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTGRQVHAHALKSERGSDLIV 189

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            + LV +Y + G       LF+ + +++L +W  ++  F +     E L+++ KM  EG 
Sbjct: 190 QNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVFRKMIVEGS 249

Query: 208 E-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
             PN   F    R C      + G+Q+H   IK   +D +++V  +L D Y+   +L  A
Sbjct: 250 HHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYR-LDRDLYVGCSLSDMYARFKNLDSA 308

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           + +F  I   D++SWNSIV+ Y+   L+ +AL LF  M+    RP   +    L      
Sbjct: 309 RVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGLLCACVGR 368

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
             +Y G+ IH Y+ KLG D G V V ++L  MY +C+ + S++ VF     + +   NS+
Sbjct: 369 DALYHGRLIHSYLVKLGLD-GDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQDVVTWNSI 427

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCA 443
           +T+     + ++ +++F  +      LD ++L+  L     SASA LG     + +H  A
Sbjct: 428 LTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVL-----SASAELGYFEMVKQVHAYA 482

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGREA 502
            K+G   +  +S +L+D Y++CG ++ + ++FE +  + +V  ++S++ GY++ G  +EA
Sbjct: 483 FKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFGYAKEA 542

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           LD+   M   G+ P+ VTF+ VL  C+  G V EG   ++ M+  YGI   R+H SC++D
Sbjct: 543 LDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIMEPEYGIVPTREHCSCIVD 602

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622
           +L RAG L +A   + Q P   D +MW +LL + ++H +  +G+R A  ++ ++P   A 
Sbjct: 603 LLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEMGKRAAEGILNIDPSHSAA 662

Query: 623 YSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           Y  + N Y+  G +    ++++      + +  G S +++ 
Sbjct: 663 YVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLK 703



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 129/492 (26%), Positives = 232/492 (47%), Gaps = 19/492 (3%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLS-------LGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +++++S CS      +G ++H  +++            N  +G+ L+ +Y R      A 
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMYGRCAAPDSAR 106

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FDE+P RN  +W  ++ A  +  R  + L +++ M   G   +  +    VR C+   
Sbjct: 107 QVFDEMPARNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 166

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  G+Q+H+H +K      ++ V NALV  YS  G + +    F+ I   D+ISW SI+
Sbjct: 167 DVGTGRQVHAHALK-SERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSII 225

Query: 286 SIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           + +A      +AL++F +M +     P+   F          G+  +G+QIHG   K   
Sbjct: 226 AGFAQQGFEMEALQVFRKMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 285

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D   ++V  +L+DMY +   ++S+   F       L   NS++ +    G + +A+ +F 
Sbjct: 286 DR-DLYVGCSLSDMYARFKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFS 344

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M D G+  D +T+   L A  V   A L   RL+H   +K G + +++V  SL+  Y+R
Sbjct: 345 EMRDSGLRPDGITVRGLLCA-CVGRDA-LYHGRLIHSYLVKLGLDGDVSVCNSLLSMYAR 402

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           C  +  +  VF +I   +VV + SI+   +++    E L +  ++ +     D+++   V
Sbjct: 403 CSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNV 462

Query: 525 LAGCNHSG---MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L+     G   MVK  Q+   + K+  G+  DR   + +ID   + G LD A  L +   
Sbjct: 463 LSASAELGYFEMVK--QVHAYAFKA--GLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMG 518

Query: 582 GGGDCMMWSSLL 593
              D   WSSL+
Sbjct: 519 NNRDVFSWSSLI 530


>gi|224070863|ref|XP_002303270.1| predicted protein [Populus trichocarpa]
 gi|222840702|gb|EEE78249.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 179/624 (28%), Positives = 324/624 (51%), Gaps = 10/624 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++   N  +  FV+ G + +A  +F  M  RD+ ++N+L+ G  K     +AL LY  +
Sbjct: 67  LSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRI 126

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +  GI+    TF SVL  C+ A     G ++H  V+   F +++ + + L+ +Y++ G  
Sbjct: 127 LWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDMDVDVVNALITMYVKCGDV 186

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
           V A  LFD++P R+  +WN M+  + E     E L ++ +M+   ++P+ ++   ++  C
Sbjct: 187 VSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISAC 246

Query: 222 SIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
              +L DE  G QLHS+V++  + D NI V N+L+  Y + G   EA+  F  +   DV+
Sbjct: 247 E--LLGDERLGTQLHSYVVRTAY-DGNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVV 303

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +I+S   D  L   ALE +  M++    P   +    L+  +  G +  G ++H   
Sbjct: 304 SWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMKLHELA 363

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + G     V V ++L DMY KC  IE ++ +F   P + +    S++  L  +    +A
Sbjct: 364 ERTGHILYVV-VANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEA 422

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +  F  M+ +    + VTL + L A +   +   G  + +H  A+K+G   +  +  +++
Sbjct: 423 LIFFRKMILKS-KPNSVTLISALSACARVGALMCG--KEIHAHALKAGMGFDGFLPNAIL 479

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y RCG +  +   F  +   +V  +  ++ GY++ G G   +++ + M++  + PD V
Sbjct: 480 DLYVRCGRMRTALNQF-NLNEKDVGAWNILLTGYAQKGKGAMVMELFKRMVESEINPDDV 538

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ +L  C+ SGMV EG   F  MK  Y I  + +HY+C++D+LGRAG L++A E +++
Sbjct: 539 TFISLLCACSRSGMVTEGLEYFQRMKVNYHITPNLKHYACVVDLLGRAGKLNEAHEFIER 598

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D  +W +LL +CR+H + ++G   A  + + +      Y  + N Y++ G+++  
Sbjct: 599 MPIKPDPAIWGALLNACRIHRHVLLGELAAQHIFKQDAESIGYYILLCNLYADSGKWDEV 658

Query: 640 MQIRETALARKLTRDIGHSLIEVN 663
            ++R T     L  D G S +EV 
Sbjct: 659 AKVRRTMKEEGLIVDPGCSWVEVK 682



 Score =  212 bits (540), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 146/507 (28%), Positives = 263/507 (51%), Gaps = 17/507 (3%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSP 150
           +QAL     M    I      F +++ +C N   Y+EG  +   VL SL   L++ +G+ 
Sbjct: 15  EQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLSSLVTLLSVRLGNA 74

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           L+ +++R G    A ++F  + ER+L +WN+++  + +    DE L +Y+++   G+ P+
Sbjct: 75  LLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALCLYHRILWAGIRPD 134

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +F  ++R C+  M L  G+++H+HV++  + D+++ V NAL+  Y  CG ++ A+  F
Sbjct: 135 VYTFPSVLRSCAGAMDLVRGREVHAHVVRFDF-DMDVDVVNALITMYVKCGDVVSARMLF 193

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  D ISWN+++S Y + D   + LELFFRM+     P + +    ++     G+  
Sbjct: 194 DKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMTSVISACELLGDER 253

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G Q+H YV +  +D G++ V ++L  MY      + + +VF     R +    ++++  
Sbjct: 254 LGTQLHSYVVRTAYD-GNISVYNSLIQMYLSVGHWKEAESVFSGMECRDVVSWTTIISGC 312

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSG 447
           + +     A+E +  M   G   DEVT+++ L     SA A+LG   +   LH  A ++G
Sbjct: 313 VDNLLPDKALETYKTMEITGTMPDEVTIASVL-----SACASLGQLDMGMKLHELAERTG 367

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
               + V+ SL+D YS+C  IE + ++F +IP  +V+ +TS++NG   N    EAL    
Sbjct: 368 HILYVVVANSLIDMYSKCKRIEKALEIFHQIPDKDVISWTSVINGLRINNRCFEALIFFR 427

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGR 566
            MI +   P+ VT +  L+ C   G +  G+ +  +++K+  G D      + ++D+  R
Sbjct: 428 KMILKSK-PNSVTLISALSACARVGALMCGKEIHAHALKAGMGFDGFLP--NAILDLYVR 484

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLL 593
            G +  A  L Q      D   W+ LL
Sbjct: 485 CGRMRTA--LNQFNLNEKDVGAWNILL 509



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 104/424 (24%), Positives = 197/424 (46%), Gaps = 13/424 (3%)

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N  L   C     ++ L+    M+   +      F  ++R C       EG+ +   V+ 
Sbjct: 2   NSRLLQLCLSGNLEQALKHLASMQEVKIPVEEDCFVALIRLCENKRGYSEGEYVWKAVLS 61

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                +++ + NAL+  +   G +  A   F  +   D+ SWN +V  Y       +AL 
Sbjct: 62  SLVTLLSVRLGNALLSMFVRFGDVGNAWNVFGRMGERDLFSWNVLVGGYTKAGFFDEALC 121

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+ R+     RP + +F   L   +   ++  G+++H +V +  FD   V V +AL  MY
Sbjct: 122 LYHRILWAGIRPDVYTFPSVLRSCAGAMDLVRGREVHAHVVRFDFDM-DVDVVNALITMY 180

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  + S+  +F+  P R     N++++    +    + +E+F  M +  I  D +T++
Sbjct: 181 VKCGDVVSARMLFDKMPTRDRISWNAMISGYFENDECLEGLELFFRMRELSIDPDLMTMT 240

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + + A  +     LG+   LH   +++ ++ NI+V  SL+  Y   GH + +  VF  + 
Sbjct: 241 SVISACELLGDERLGT--QLHSYVVRTAYDGNISVYNSLIQMYLSVGHWKEAESVFSGME 298

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-- 537
             +VV +T+I++G   N +  +AL+  + M   G +PD+VT   VL+ C   G +  G  
Sbjct: 299 CRDVVSWTTIISGCVDNLLPDKALETYKTMEITGTMPDEVTIASVLSACASLGQLDMGMK 358

Query: 538 --QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
             +L   +   +Y + A+      +IDM  +   ++KA E+  Q P   D + W+S++  
Sbjct: 359 LHELAERTGHILYVVVANS-----LIDMYSKCKRIEKALEIFHQIP-DKDVISWTSVING 412

Query: 596 CRVH 599
            R++
Sbjct: 413 LRIN 416


>gi|414888053|tpg|DAA64067.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 754

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 178/602 (29%), Positives = 314/602 (52%), Gaps = 20/602 (3%)

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAGFYTEG 129
           P+RD  +YN ++S       P  AL     M+  G ++  A TF+  LS+ +  G     
Sbjct: 120 PSRDTSSYNTILSATPD---PDDALAFAARMLRAGDVRPDAITFTVTLSLAAGRGEGRLV 176

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            Q+H  V   G   ++++G+ LV  Y R      A  +F+E+P R+L +WN ++   C L
Sbjct: 177 RQLHALVSRAGIAADVFVGNALVTAYARGASLDAARKVFEEMPARDLVSWNALV---CGL 233

Query: 190 SR----PDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           ++    P EV+R++ +M K  GV P+ +S C ++  C     L+ G+Q+H   +KLG ++
Sbjct: 234 AQDGECPAEVIRVFLRMLKHGGVRPDRISVCSVISACGGEGKLELGRQIHGFAVKLG-IE 292

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++ +AN LV  Y  CG+   A++ F+F+   DV+SW +++S+  +     DA+ LF  M
Sbjct: 293 GHVSIANVLVAMYYKCGTPGCARRLFEFMGERDVVSWTTVMSMDRE-----DAVSLFNGM 347

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P+  +FV  L+          G+ +H    K G         S +T MY K   
Sbjct: 348 MRDGVAPNEVTFVAILSAMPGHCPAREGQMVHAVCIKTGLSDKPAAANSFIT-MYAKLRR 406

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++ +  +F   P   +   N+L++    +   +DA+E F  MV +     E T ++ L A
Sbjct: 407 MDDAKMIFGLMPHPEVIAWNALISGYAQNEMCQDALEAFLSMV-KITKPSETTFASILSA 465

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           ++   + ++   ++ HC  +K G  ++  VS +L+D Y++ G +E S + F +    +++
Sbjct: 466 VTAVETVSMAYGQMYHCQTLKLGLGASEYVSGALIDLYAKRGSLEESWKAFGETVHRSLI 525

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T+I++  S++G     + +   M + G+ PD V  L VL  C +SG    G+ +F SM
Sbjct: 526 AWTAIISANSKHGNYDGVVSLFNDMARSGVTPDGVVLLSVLTACRYSGFASLGREIFESM 585

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
            + +G +   +HY+C++DMLGRAG L++AEEL+ Q P G       SLL +CR+HGN  +
Sbjct: 586 ATKHGAELWPEHYACVVDMLGRAGRLEEAEELMLQMPSGPSVSAMQSLLGACRIHGNTDV 645

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           G RVA +L+E EP +   Y  +SN Y+E G++    ++R       + +++G S ++   
Sbjct: 646 GERVAGVLLETEPTESGAYVLLSNIYAEKGDWGAVARVRRKMRGMGVKKEVGFSWVDAGG 705

Query: 665 CH 666
            +
Sbjct: 706 AN 707



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 131/454 (28%), Positives = 223/454 (49%), Gaps = 14/454 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEM 101
           +++  N  +  + +   L++A+K+F+EMPARD+V++N L+ G  +    P + + ++  M
Sbjct: 191 DVFVGNALVTAYARGASLDAARKVFEEMPARDLVSWNALVCGLAQDGECPAEVIRVFLRM 250

Query: 102 VSH-GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           + H G++    +  SV+S C   G    G QIH   + LG   ++ I + LV +Y + G 
Sbjct: 251 LKHGGVRPDRISVCSVISACGGEGKLELGRQIHGFAVKLGIEGHVSIANVLVAMYYKCGT 310

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LF+ + ER++ +W  ++     + R D V  ++N M  +GV PN ++F  ++  
Sbjct: 311 PGCARRLFEFMGERDVVSWTTVM----SMDREDAV-SLFNGMMRDGVAPNEVTFVAILSA 365

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                   EG+ +H+  IK G  D     AN+ +  Y+    + +AK  F  +P  +VI+
Sbjct: 366 MPGHCPAREGQMVHAVCIKTGLSD-KPAAANSFITMYAKLRRMDDAKMIFGLMPHPEVIA 424

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF--ASRTGNVYFGKQIHGY 338
           WN+++S YA  ++  DALE F  M    K PS  +F   L+   A  T ++ +G+  H  
Sbjct: 425 WNALISGYAQNEMCQDALEAFLSMVKITK-PSETTFASILSAVTAVETVSMAYGQMYHCQ 483

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             KLG    S +V  AL D+Y K   +E S   F     RSL    +++++    GN   
Sbjct: 484 TLKLGLG-ASEYVSGALIDLYAKRGSLEESWKAFGETVHRSLIAWTAIISANSKHGNYDG 542

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            V +F  M   G+  D V L + L A   S  A+LG   +    A K G E        +
Sbjct: 543 VVSLFNDMARSGVTPDGVVLLSVLTACRYSGFASLGR-EIFESMATKHGAELWPEHYACV 601

Query: 459 MDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMN 491
           +D   R G +E + ++  ++PS P+V    S++ 
Sbjct: 602 VDMLGRAGRLEEAEELMLQMPSGPSVSAMQSLLG 635



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 91/349 (26%), Positives = 167/349 (47%), Gaps = 18/349 (5%)

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLC 307
           V N+L   Y+   S   A + F   P  D  S+N+I+S   D D   DAL    RM +  
Sbjct: 95  VTNSLAARYAKGNSFAAAARVFAAAPSRDTSSYNTILSATPDPD---DALAFAARMLRAG 151

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             RP   +F   L+ A+  G     +Q+H  V++ G     V V +AL   Y +   +++
Sbjct: 152 DVRPDAITFTVTLSLAAGRGEGRLVRQLHALVSRAGIA-ADVFVGNALVTAYARGASLDA 210

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIK-DAVEMFGFMVDE-GIGLDEVTLSTTLKAL 425
           +  VFE  P R L   N+L+  L   G    + + +F  M+   G+  D +++ + + A 
Sbjct: 211 ARKVFEEMPARDLVSWNALVCGLAQDGECPAEVIRVFLRMLKHGGVRPDRISVCSVISAC 270

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
                  LG  R +H  A+K G E +++++  L+  Y +CG    + ++FE +   +VV 
Sbjct: 271 GGEGKLELG--RQIHGFAVKLGIEGHVSIANVLVAMYYKCGTPGCARRLFEFMGERDVVS 328

Query: 486 FTSIMNGYSRNGMGRE-ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           +T++M+      M RE A+ +   M++ G+ P++VTF+ +L+        +EGQ+V +++
Sbjct: 329 WTTVMS------MDREDAVSLFNGMMRDGVAPNEVTFVAILSAMPGHCPAREGQMV-HAV 381

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
               G+       +  I M  +   +D A+ +    P   + + W++L+
Sbjct: 382 CIKTGLSDKPAAANSFITMYAKLRRMDDAKMIFGLMP-HPEVIAWNALI 429



 Score = 42.7 bits (99), Expect = 0.56,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 10/158 (6%)

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           LH  A+ SG  +   V+ SL   Y++      + +VF   PS +   + +I++       
Sbjct: 80  LHALAVISGLAAFAPVTNSLAARYAKGNSFAAAARVFAAAPSRDTSSYNTILSATPDP-- 137

Query: 499 GREALDMLEVMIQRGLI-PDKVTFLCVLAGCNHSGMVKEGQLV--FNSMKSVYGIDADRQ 555
             +AL     M++ G + PD +TF   L+     G   EG+LV   +++ S  GI AD  
Sbjct: 138 -DDALAFAARMLRAGDVRPDAITFTVTLSLAAGRG---EGRLVRQLHALVSRAGIAADVF 193

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             + ++    R   LD A ++ ++ P   D + W++L+
Sbjct: 194 VGNALVTAYARGASLDAARKVFEEMP-ARDLVSWNALV 230


>gi|147770957|emb|CAN76247.1| hypothetical protein VITISV_023383 [Vitis vinifera]
          Length = 820

 Score =  290 bits (742), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 171/585 (29%), Positives = 306/585 (52%), Gaps = 11/585 (1%)

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
           C   R P    + +  +       S +  + +L+            QIH +++   +   
Sbjct: 117 CDAMRGPSPLKFFHKGLSPTPPSPSPTHLNHLLNTAIQTRSLKHATQIHTQIIINNYTSL 176

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLATWNLMLRAFCELSRPDEVLRMYNKM 202
            ++ + L++LY + G   +AL LF       + + TW  ++      +   + L ++N+M
Sbjct: 177 PFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQALSLFNQM 236

Query: 203 KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
           +  G  PN  +F  ++   +  M++  G+QLHS + K G+ D NIFV  ALVD Y+ C  
Sbjct: 237 RCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGF-DANIFVGTALVDMYAKCAD 295

Query: 263 LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR---PSIRSFVEF 319
           +  A + FD +P  +++SWNS++  +   +L   A+ +F    + R++   P+  S    
Sbjct: 296 MHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVF--KDVLREKTVIPNEVSVSSV 353

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L+  +  G + FG+Q+HG V K G      +V ++L DMY KC   +  V +F+    R 
Sbjct: 354 LSACANMGGLNFGRQVHGVVVKYGLV-PLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDRD 412

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   N L+   + +   ++A   F  M  EGI  DE + ST L + +  A+ + G+   +
Sbjct: 413 VVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTA--I 470

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H   IK G+  N+ +  SL+  Y++CG +  ++QVFE I   NV+ +T++++ Y  +G  
Sbjct: 471 HDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCA 530

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            + +++ E M+  G+ P  VTF+CVL+ C+H+G V+EG   FNSMK ++ ++   +HY+C
Sbjct: 531 NQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYAC 590

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           M+D+LGRAG LD+A+  ++  P      +W +LL +CR +GN  +GR  A  L E+EP +
Sbjct: 591 MVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPYN 650

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
              Y  ++N  +  G  E + ++R       + ++ G S I+V +
Sbjct: 651 PGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKN 695



 Score =  175 bits (443), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 143/532 (26%), Positives = 247/532 (46%), Gaps = 27/532 (5%)

Query: 42  LNIYSS-----NRTIDDFVKSGHLNSAKKLFD--EMPARDMVTYNLLISGCGKFRHPKQA 94
           +N Y+S     N  I+ + K G LN A  LF       + +VT+  LI+    F    QA
Sbjct: 170 INNYTSLPFLFNNLINLYAKCGCLNQALLLFSITHHHFKTIVTWTSLITHLSHFNMHLQA 229

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
           L L+++M   G   +  TFSS+LS  +       G Q+H  +   GF  N+++G+ LVD+
Sbjct: 230 LSLFNQMRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDM 289

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLS 213
           Y +      A+ +FD++PERNL +WN M+  F   +  D  + ++   ++ + V PN +S
Sbjct: 290 YAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVS 349

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++  C+    L+ G+Q+H  V+K G V +  +V N+L+D Y  C    E  K F  +
Sbjct: 350 VSSVLSACANMGGLNFGRQVHGVVVKYGLVPLT-YVMNSLMDMYFKCRFFDEGVKLFQCV 408

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              DV++WN +V  +   D   +A   F+ M+     P   SF   L+ ++    ++ G 
Sbjct: 409 GDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGT 468

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            IH  + KLG+   ++ +  +L  MY KC  +  +  VFE     ++    +++++    
Sbjct: 469 AIHDQIIKLGYV-KNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLH 527

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G     +E+F  M+ EGI    VT    L A S +     G   L H  ++K   + N  
Sbjct: 528 GCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEG---LAHFNSMKKIHDMNPG 584

Query: 454 VS--CSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDMLE 507
                 ++D   R G ++ + +  E +P  P    + +++    + G   MGREA + L 
Sbjct: 585 PEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLF 644

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            M      P     L  +  C  SG ++E     N ++ + G++  R+   C
Sbjct: 645 EM--EPYNPGNYVLLANM--CTRSGRLEEA----NEVRRLMGVNGVRKEPGC 688


>gi|357127622|ref|XP_003565478.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Brachypodium distachyon]
          Length = 870

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 174/611 (28%), Positives = 315/611 (51%), Gaps = 6/611 (0%)

Query: 54  FVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST 112
           ++K G L +A+++FDEMP   D+  +  L+SG  K    ++ + L+ +M   G++  A T
Sbjct: 139 YLKCGDLENARRVFDEMPQVSDVRVWTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYT 198

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            S VL   +  G   +G  +H  +  LGFG    +G+ L+  Y +   +  A+ +FD +P
Sbjct: 199 ISCVLKCIAGLGSIEDGEVVHGLLEKLGFGSQCAVGNALMAFYAKSNRTKDAILVFDGMP 258

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            R++ +WN M+         D+ + ++ +M  EG E +  +   ++  C+   LL  G+ 
Sbjct: 259 HRDVISWNSMISGCTSNGLYDKAIELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRV 318

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H + +K G++     +AN L+D YS C       K F  +   +V+SW ++++ Y    
Sbjct: 319 VHGYSVKTGFIS-QTSLANVLLDMYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAG 377

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L      LF  M L   RP I +    L+  +    +  GK +HGY  + G +   + V 
Sbjct: 378 LYDKVAGLFQEMGLEGTRPDIFAITSALHAFAGNELLKHGKSVHGYAIRNGMEK-VLAVT 436

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL +MY KC  +E +  +F+    + +   N+L+     +    +A  +F  M+ + + 
Sbjct: 437 NALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-LR 495

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            + VT++  L A +  +S   G  R +H  A++ G+  +  V+ +L+D Y +CG + L+ 
Sbjct: 496 PNAVTMTCILPAAASLSSLERG--REMHAYALRRGYLEDDFVANALIDMYVKCGALLLAR 553

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           ++F+++ + N++ +T ++ GY  +G GR+A+ + E M   G+ PD  +F  +L  C+HSG
Sbjct: 554 RLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSG 613

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  EG   F++M+  + I+   +HY+CM+D+L   G L +A E +   P   D  +W SL
Sbjct: 614 LRDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSL 673

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           LR CR+H N  +   VA  + ELEP +   Y  ++N Y+E   +E   +++     R L 
Sbjct: 674 LRGCRIHRNVKLAEEVAERVFELEPENTGYYVLLANIYAEAERWEAVRKLKNKIGGRGLR 733

Query: 653 RDIGHSLIEVN 663
            + G S IE  
Sbjct: 734 ENTGCSWIEAK 744



 Score =  168 bits (425), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 143/544 (26%), Positives = 266/544 (48%), Gaps = 23/544 (4%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+K  D +P  D+   NL I    +    ++AL L   + S G+ +   ++ +VL +CS 
Sbjct: 52  AEKSPDWVPTSDV---NLHIQRLCRSGDLEEALGL---LGSDGVDDR--SYGAVLQLCSE 103

Query: 123 AGFYTEGIQIH--CRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPE-RNLAT 178
                 G + H   R  SLG  G++  +G  LV +Y++ G    A  +FDE+P+  ++  
Sbjct: 104 VRSLEGGKRAHFLVRASSLGRDGMDNVLGQKLVLMYLKCGDLENARRVFDEMPQVSDVRV 163

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM-LLDEGKQLHSHV 237
           W  ++  + +     E + ++ KM   GV P+  +   +++ C  G+  +++G+ +H  +
Sbjct: 164 WTALMSGYAKAGDLREGVLLFRKMHCCGVRPDAYTISCVLK-CIAGLGSIEDGEVVHGLL 222

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            KLG+      V NAL+ FY+      +A   FD +P  DVISWNS++S      L   A
Sbjct: 223 EKLGF-GSQCAVGNALMAFYAKSNRTKDAILVFDGMPHRDVISWNSMISGCTSNGLYDKA 281

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           +ELF RM L  +     + +  L   +    ++ G+ +HGY  K GF      + + L D
Sbjct: 282 IELFVRMWLEGEELDSATLLSVLPACAELHLLFLGRVVHGYSVKTGFI-SQTSLANVLLD 340

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY  C+   S+  +F +   +++    +++TS   +G       +F  M  EG   D   
Sbjct: 341 MYSNCSDWRSTNKIFRNMVQKNVVSWTAMITSYTRAGLYDKVAGLFQEMGLEGTRPDIFA 400

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           +++ L A   + +  L   + +H  AI++G E  +AV+ +LM+ Y +CG++E +  +F+ 
Sbjct: 401 ITSALHAF--AGNELLKHGKSVHGYAIRNGMEKVLAVTNALMEMYVKCGNMEEAKLIFDG 458

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDML-EVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
           + S +++ + +++ GYSRN +  EA  +  E+++Q  L P+ VT  C+L        ++ 
Sbjct: 459 VVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ--LRPNAVTMTCILPAAASLSSLER 516

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G+   ++     G   D    + +IDM  + G L  A  L  +     + + W+ ++   
Sbjct: 517 GR-EMHAYALRRGYLEDDFVANALIDMYVKCGALLLARRLFDRLS-NKNLISWTIMVAGY 574

Query: 597 RVHG 600
            +HG
Sbjct: 575 GMHG 578



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 66/263 (25%), Positives = 135/263 (51%), Gaps = 5/263 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ++ +VK G++  AK +FD + ++DM+++N LI G  +     +A  L+ EM+   +
Sbjct: 436 TNALMEMYVKCGNMEEAKLIFDGVVSKDMISWNTLIGGYSRNNLANEAFSLFTEMLLQ-L 494

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + +A T + +L   ++      G ++H   L  G+  + ++ + L+D+Y++ G  + A  
Sbjct: 495 RPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLARR 554

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LFD L  +NL +W +M+  +    R  + + ++ +M+  G+ P+  SF  ++  CS   L
Sbjct: 555 LFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHSGL 614

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
            DEG +    + K   ++  +     +VD     G+L EA +  D +P++ D   W S++
Sbjct: 615 RDEGWRFFDAMRKEHKIEPRLKHYTCMVDLLINTGNLKEAYEFIDSMPIEPDSSIWVSLL 674

Query: 286 ---SIYADYDLIFDALELFFRMQ 305
               I+ +  L  +  E  F ++
Sbjct: 675 RGCRIHRNVKLAEEVAERVFELE 697



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 51/192 (26%), Positives = 97/192 (50%), Gaps = 8/192 (4%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSA 63
           +L P   T+T + P   S+  L     + +Y      L + + +N  ID +VK G L  A
Sbjct: 493 QLRPNAVTMTCILPAAASLSSLERGREMHAYALRRGYLEDDFVANALIDMYVKCGALLLA 552

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           ++LFD +  ++++++ ++++G G     + A+ L+++M   GI   A++FS++L  CS++
Sbjct: 553 RRLFDRLSNKNLISWTIMVAGYGMHGRGRDAIALFEQMRVSGIAPDAASFSAILYACSHS 612

Query: 124 GFYTEGIQIH---CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATW 179
           G   EG +      +   +   L  Y  + +VDL +  G    A +  D +P E + + W
Sbjct: 613 GLRDEGWRFFDAMRKEHKIEPRLKHY--TCMVDLLINTGNLKEAYEFIDSMPIEPDSSIW 670

Query: 180 NLMLRAFCELSR 191
             +LR  C + R
Sbjct: 671 VSLLRG-CRIHR 681


>gi|296089484|emb|CBI39303.3| unnamed protein product [Vitis vinifera]
          Length = 723

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 183/605 (30%), Positives = 315/605 (52%), Gaps = 17/605 (2%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           MP R++V++N LISG  +     + + L+ E     ++    TFS+ LSVC        G
Sbjct: 1   MPKRNVVSWNSLISGYTQMGFYHEVMNLFKEARMSDLRLDKFTFSNALSVCGRTLDLRLG 60

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
             IH  +   G G  + + + L+D+Y + G    A  +F+   E +  +WN ++  +  +
Sbjct: 61  RLIHALITVSGLGGPVLLTNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRI 120

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC--SIGMLLDEGKQLHSHVIKLGWVDVNI 247
              DE+LR+  KM   G+  N  +    ++ C  +    ++ GK LH   +KLG +D+++
Sbjct: 121 GSNDEMLRLLVKMLRHGLNLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLG-LDLDV 179

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD-----ALELFF 302
            V  AL+D Y+  G L +A K F  +P  +V+ +N++++ +   + + D     A+ LFF
Sbjct: 180 VVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFF 239

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            MQ    +PS  +F   L   S       GKQIH  + K         + +AL ++Y   
Sbjct: 240 EMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEF-IGNALVELYSLS 298

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             IE  +  F S P   +    SL+   + +G  +  + +F  ++  G   DE T+S  L
Sbjct: 299 GSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIML 358

Query: 423 KALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
                SA ANL + +    +H  AIK+G  +   +  S +  Y++CG I+ ++  F++  
Sbjct: 359 -----SACANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETK 413

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           +P++V ++ +++  +++G  +EA+D+ E+M   G+ P+ +TFL VL  C+H G+V+EG  
Sbjct: 414 NPDIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLR 473

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F  MK  +GI  + +H +C++D+LGRAG L +AE  +  +   GD +MW SLL +CRVH
Sbjct: 474 YFEIMKKDHGITPNVKHSACIVDLLGRAGRLAEAESFIMDSGFEGDPVMWRSLLSACRVH 533

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
                G+RVA  ++ELEP   A Y  + N Y++ G    + +IR     R + ++ G S 
Sbjct: 534 KATDTGKRVAERVIELEPEAAASYVLLYNIYNDAGIQMPATEIRNLMKDRGVKKEPGLSW 593

Query: 660 IEVNS 664
           IEV +
Sbjct: 594 IEVGN 598



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 204/429 (47%), Gaps = 10/429 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ID + K G ++ A+ +F+     D V++N LI+G  +     + L L  +M+ HG+
Sbjct: 79  TNSLIDMYCKCGRIDWARLVFESADELDSVSWNSLIAGYVRIGSNDEMLRLLVKMLRHGL 138

Query: 107 KESASTFSSVLSVC-SNAGFYTE-GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
             ++    S L  C SN     E G  +H   + LG  L++ +G+ L+D Y ++G    A
Sbjct: 139 NLNSYALGSALKACGSNFSSSIECGKMLHGCAVKLGLDLDVVVGTALLDTYAKIGDLEDA 198

Query: 165 LDLFDELPERNLATWNLMLRAFCELSR-----PDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
             +F  +P+ N+  +N M+  F ++        +E + ++ +M++ G++P+  +F  +++
Sbjct: 199 TKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMYLFFEMQSRGMKPSEFTFSSILK 258

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS     + GKQ+H+ + K   +  + F+ NALV+ YS  GS+ +  K F   P  DV+
Sbjct: 259 ACSTIEAFECGKQIHAQIFKYN-LQSDEFIGNALVELYSLSGSIEDGLKCFHSTPKLDVV 317

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW S++  +         L LF  +    ++P   +    L+  +    V  G+QIH Y 
Sbjct: 318 SWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSACANLAAVKSGEQIHAYA 377

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G  + ++ +Q++   MY KC  I+S+   F+      +   + +++S    G  K+A
Sbjct: 378 IKTGIGNFTI-IQNSQICMYAKCGDIDSANMTFKETKNPDIVSWSVMISSNAQHGCAKEA 436

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           V++F  M   GI  + +T    L A S       G  R         G   N+  S  ++
Sbjct: 437 VDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEG-LRYFEIMKKDHGITPNVKHSACIV 495

Query: 460 DAYSRCGHI 468
           D   R G +
Sbjct: 496 DLLGRAGRL 504



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 87/328 (26%), Positives = 160/328 (48%), Gaps = 12/328 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF-----RHPKQALY 96
           L++      +D + K G L  A K+F  MP  ++V YN +I+G  +          +A+Y
Sbjct: 177 LDVVVGTALLDTYAKIGDLEDATKIFKLMPDPNVVMYNAMIAGFLQMETMADEFANEAMY 236

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L+ EM S G+K S  TFSS+L  CS    +  G QIH ++       + +IG+ LV+LY 
Sbjct: 237 LFFEMQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYS 296

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
             G     L  F   P+ ++ +W  ++    +  + +  L +++++   G +P+  +   
Sbjct: 297 LSGSIEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISI 356

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           M+  C+    +  G+Q+H++ IK G  +  I + N+ +  Y+ CG +  A  +F      
Sbjct: 357 MLSACANLAAVKSGEQIHAYAIKTGIGNFTI-IQNSQICMYAKCGDIDSANMTFKETKNP 415

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D++SW+ ++S  A +    +A++LF  M+     P+  +F+  L   S  G V  G +  
Sbjct: 416 DIVSWSVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLR-- 473

Query: 337 GYVTKLGFDHG---SVHVQSALTDMYGK 361
            Y   +  DHG   +V   + + D+ G+
Sbjct: 474 -YFEIMKKDHGITPNVKHSACIVDLLGR 500



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 72/289 (24%), Positives = 130/289 (44%), Gaps = 4/289 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S  + P   T +++   C++I        + +   + N Q + +  N  ++ +  SG 
Sbjct: 241 MQSRGMKPSEFTFSSILKACSTIEAFECGKQIHAQIFKYNLQSDEFIGNALVELYSLSGS 300

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +    K F   P  D+V++  LI G  +    +  L L+ E++  G K    T S +LS 
Sbjct: 301 IEDGLKCFHSTPKLDVVSWTSLIVGHVQNGQFEGGLTLFHELLFSGRKPDEFTISIMLSA 360

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+N      G QIH   +  G G    I +  + +Y + G    A   F E    ++ +W
Sbjct: 361 CANLAAVKSGEQIHAYAIKTGIGNFTIIQNSQICMYAKCGDIDSANMTFKETKNPDIVSW 420

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           ++M+ +  +     E + ++  MK  G+ PN ++F  ++  CS G L++EG +    + K
Sbjct: 421 SVMISSNAQHGCAKEAVDLFELMKGSGIAPNHITFLGVLVACSHGGLVEEGLRYFEIMKK 480

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSF--DFIPVDDVISWNSIVS 286
              +  N+  +  +VD     G L EA +SF  D     D + W S++S
Sbjct: 481 DHGITPNVKHSACIVDLLGRAGRLAEA-ESFIMDSGFEGDPVMWRSLLS 528


>gi|356557757|ref|XP_003547177.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
            chloroplastic-like [Glycine max]
          Length = 1227

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 180/611 (29%), Positives = 316/611 (51%), Gaps = 6/611 (0%)

Query: 54   FVKSGHLNSAKKLFDEMPARDMV-TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST 112
            +V  G L   +++FD + + + V  +NL++S   K    ++++YL+ +M   GI  ++ T
Sbjct: 496  YVSCGALREGRRIFDHILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYT 555

Query: 113  FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            FS +L   +  G   E  +IH  V  LGFG    + + L+  Y + G    A  LFDEL 
Sbjct: 556  FSCILKCFATLGRVGECKRIHGCVYKLGFGSYNTVVNSLIATYFKSGEVDSAHKLFDELG 615

Query: 173  ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            +R++ +WN M+            L  + +M    V  +  +    V  C+    L  G+ 
Sbjct: 616  DRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRA 675

Query: 233  LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            LH   +K  +    +   N L+D YS CG+L +A ++F+ +    V+SW S+++ Y    
Sbjct: 676  LHGQGVKACF-SREVMFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREG 734

Query: 293  LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            L  DA+ LF+ M+     P + S    L+  +   ++  G+ +H Y+ K       + V 
Sbjct: 735  LYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMAL-CLPVS 793

Query: 353  SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
            +AL DMY KC  +E +  VF   P + +   N+++     +    +A+++F  M  E   
Sbjct: 794  NALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKESRP 853

Query: 413  LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
             D +T++  L A    A+  +G  R +H C +++G+ S + V+ +L+D Y +CG +  + 
Sbjct: 854  -DGITMACLLPACGSLAALEIG--RGIHGCILRNGYSSELHVANALIDMYVKCGSLVHAR 910

Query: 473  QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
             +F+ IP  +++ +T +++G   +G+G EA+   + M   G+ PD++TF  +L  C+HSG
Sbjct: 911  LLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSG 970

Query: 533  MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            ++ EG   FNSM S   ++   +HY+CM+D+L R G L KA  L++  P   D  +W +L
Sbjct: 971  LLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIWGAL 1030

Query: 593  LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
            L  CR+H +  +  +VA  + ELEP +   Y  ++N Y+E  ++E   ++RE    R L 
Sbjct: 1031 LCGCRIHHDVELAEKVAEHVFELEPDNAGYYVLLANIYAEAEKWEEVKKLRERIGKRGLK 1090

Query: 653  RDIGHSLIEVN 663
            +  G S IEV 
Sbjct: 1091 KSPGCSWIEVQ 1101



 Score =  194 bits (494), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 139/508 (27%), Positives = 247/508 (48%), Gaps = 14/508 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           + +SS+L +C+      EG  +H  + S G  +   +G+ LV +Y+  G       +FD 
Sbjct: 452 NAYSSILQLCAEHKCLQEGKMVHSVISSNGIPIEGVLGAKLVFMYVSCGALREGRRIFDH 511

Query: 171 -LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            L +  +  WNLM+  + ++    E + ++ KM+  G+  N  +F  +++  +    + E
Sbjct: 512 ILSDNKVFLWNLMMSEYAKIGDYRESIYLFKKMQKLGITGNSYTFSCILKCFATLGRVGE 571

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            K++H  V KLG+   N  V N+L+  Y   G +  A K FD +   DV+SWNS++S   
Sbjct: 572 CKRIHGCVYKLGFGSYNT-VVNSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCV 630

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                  ALE F +M + R    + + V  +   +  G++  G+ +HG   K  F    V
Sbjct: 631 MNGFSHSALEFFVQMLILRVGVDLATLVNSVAACANVGSLSLGRALHGQGVKACFSR-EV 689

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
              + L DMY KC  +  ++  FE    +++    SL+ + +  G   DA+ +F  M  +
Sbjct: 690 MFNNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESK 749

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+  D  ++++ L A +   S + G  R +H    K+     + VS +LMD Y++CG +E
Sbjct: 750 GVSPDVYSMTSVLHACACGNSLDKG--RDVHNYIRKNNMALCLPVSNALMDMYAKCGSME 807

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            ++ VF +IP  ++V + +++ GYS+N +  EAL +   M Q+   PD +T  C+L  C 
Sbjct: 808 EAYLVFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEM-QKESRPDGITMACLLPACG 866

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
               ++ G+ +   +    G  ++    + +IDM  + G L  A  L    P   D + W
Sbjct: 867 SLAALEIGRGIHGCILR-NGYSSELHVANALIDMYVKCGSLVHARLLFDMIP-EKDLITW 924

Query: 590 SSLLRSCRVH--GNEIIGR----RVANI 611
           + ++  C +H  GNE I      R+A I
Sbjct: 925 TVMISGCGMHGLGNEAIATFQKMRIAGI 952



 Score =  191 bits (486), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 122/446 (27%), Positives = 230/446 (51%), Gaps = 5/446 (1%)

Query: 48   NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
            N  I  + KSG ++SA KLFDE+  RD+V++N +ISGC        AL  + +M+   + 
Sbjct: 592  NSLIATYFKSGEVDSAHKLFDELGDRDVVSWNSMISGCVMNGFSHSALEFFVQMLILRVG 651

Query: 108  ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               +T  + ++ C+N G  + G  +H + +   F   +   + L+D+Y + G    A+  
Sbjct: 652  VDLATLVNSVAACANVGSLSLGRALHGQGVKACFSREVMFNNTLLDMYSKCGNLNDAIQA 711

Query: 168  FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
            F+++ ++ + +W  ++ A+      D+ +R++ +M+++GV P+  S   ++  C+ G  L
Sbjct: 712  FEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGVSPDVYSMTSVLHACACGNSL 771

Query: 228  DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            D+G+ +H+++ K   + + + V+NAL+D Y+ CGS+ EA   F  IPV D++SWN+++  
Sbjct: 772  DKGRDVHNYIRKNN-MALCLPVSNALMDMYAKCGSMEEAYLVFSQIPVKDIVSWNTMIGG 830

Query: 288  YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
            Y+   L  +AL+LF  MQ    RP   +    L        +  G+ IHG + + G+   
Sbjct: 831  YSKNSLPNEALKLFAEMQK-ESRPDGITMACLLPACGSLAALEIGRGIHGCILRNGYS-S 888

Query: 348  SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
             +HV +AL DMY KC  +  +  +F+  P + L     +++     G   +A+  F  M 
Sbjct: 889  ELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMR 948

Query: 408  DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
              GI  DE+T ++ L A S S   N G     +    +   E  +     ++D  +R G+
Sbjct: 949  IAGIKPDEITFTSILYACSHSGLLNEG-WGFFNSMISECNMEPKLEHYACMVDLLARTGN 1007

Query: 468  IELSHQVFEKIP-SPNVVCFTSIMNG 492
            +  ++ + E +P  P+   + +++ G
Sbjct: 1008 LSKAYNLIETMPIKPDATIWGALLCG 1033



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 78/281 (27%), Positives = 150/281 (53%), Gaps = 2/281 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  +D + K G+LN A + F++M  + +V++  LI+   +      A+ L+ EM S G+
Sbjct: 692 NNTLLDMYSKCGNLNDAIQAFEKMGQKTVVSWTSLIAAYVREGLYDDAIRLFYEMESKGV 751

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                + +SVL  C+      +G  +H  +      L L + + L+D+Y + G    A  
Sbjct: 752 SPDVYSMTSVLHACACGNSLDKGRDVHNYIRKNNMALCLPVSNALMDMYAKCGSMEEAYL 811

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F ++P +++ +WN M+  + + S P+E L+++ +M+ E   P+G++   ++  C     
Sbjct: 812 VFSQIPVKDIVSWNTMIGGYSKNSLPNEALKLFAEMQKES-RPDGITMACLLPACGSLAA 870

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L+ G+ +H  +++ G+    + VANAL+D Y  CGSL+ A+  FD IP  D+I+W  ++S
Sbjct: 871 LEIGRGIHGCILRNGY-SSELHVANALIDMYVKCGSLVHARLLFDMIPEKDLITWTVMIS 929

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
               + L  +A+  F +M++   +P   +F   L   S +G
Sbjct: 930 GCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACSHSG 970



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 56/184 (30%), Positives = 90/184 (48%), Gaps = 13/184 (7%)

Query: 8    PRVRTITTLAPTCTSIVPLS------SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
            P   T+  L P C S+  L         +L + Y        ++ +N  ID +VK G L 
Sbjct: 853  PDGITMACLLPACGSLAALEIGRGIHGCILRNGYSSE-----LHVANALIDMYVKCGSLV 907

Query: 62   SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
             A+ LFD +P +D++T+ ++ISGCG      +A+  + +M   GIK    TF+S+L  CS
Sbjct: 908  HARLLFDMIPEKDLITWTVMISGCGMHGLGNEAIATFQKMRIAGIKPDEITFTSILYACS 967

Query: 122  NAGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT-W 179
            ++G   EG      ++S       L   + +VDL  R G   +A +L + +P +  AT W
Sbjct: 968  HSGLLNEGWGFFNSMISECNMEPKLEHYACMVDLLARTGNLSKAYNLIETMPIKPDATIW 1027

Query: 180  NLML 183
              +L
Sbjct: 1028 GALL 1031


>gi|242051244|ref|XP_002463366.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
 gi|241926743|gb|EER99887.1| hypothetical protein SORBIDRAFT_02g042450 [Sorghum bicolor]
          Length = 745

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 178/596 (29%), Positives = 316/596 (53%), Gaps = 20/596 (3%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQI 132
           D  +YN ++S       P  AL     M+  G ++  A TF+  LS+ +  G      Q+
Sbjct: 114 DTRSYNTILSATPD---PDDALAFAARMLRTGDVRPDAVTFTVTLSLAAGRGEAHLVRQL 170

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR- 191
           H      G   ++++G+ LV  Y R G    A  +F+E+P R+L +WN ++   C L++ 
Sbjct: 171 HALASRAGIATDVFVGNALVTAYSRGGLMDAARKVFEEMPARDLVSWNALV---CGLAQD 227

Query: 192 ---PDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                EV+R++ +M  +G V P+ +S C ++  C     L+ G+Q+H   +KLG V+ ++
Sbjct: 228 GECSAEVIRVFLRMLKQGDVRPDRISVCSVIPACGAEGKLELGRQIHGFAVKLG-VEGHV 286

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            +AN LV  Y  CG+   A++ F+F+   DVISW +++S+  +     DA+ LF  M+  
Sbjct: 287 SIANVLVAMYYKCGTPGCARRLFEFMGERDVISWTTVMSMDGE-----DAVSLFNGMRRD 341

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P+  +FV  L+          G+ IH    K      +    S +T MY K   ++ 
Sbjct: 342 GVAPNEVTFVAMLSSMPGDCPAREGQMIHAVCLKTSLSDKAAAANSLIT-MYAKLRRMDD 400

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  +F   P   +   N+L++    +   +DA+E F  M+ + +  +E T ++ L A++ 
Sbjct: 401 ARMIFSLMPHSEIIAWNALISGYAQNEMCQDALEAFLAMM-KIMKPNETTFASILSAVTA 459

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             + ++   ++ HC A+K G  ++  VS +L+D Y++ G +E S + F +    +++ +T
Sbjct: 460 VETVSMAYGQMYHCQALKLGLGASEYVSGALIDMYAKRGSLEESWKAFGETVHRSLIAWT 519

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           +I++  S++G     + +   M+  G+ PD V  L VL  C +SG V  G+ +F+SM + 
Sbjct: 520 AIISANSKHGNYDAVVSLFNDMVGSGVAPDGVVLLSVLTACRYSGFVSLGREIFDSMAAK 579

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           +G +   +HY+C++DMLGRAG L++AEEL+ Q P G       SLL +CR+HGN  +G R
Sbjct: 580 HGAELWPEHYACVVDMLGRAGRLEEAEELMLQMPSGPSVSALQSLLGACRIHGNTDVGER 639

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           VA++L E EP +   Y  +SN Y+E G++    ++R     R + +++G S ++  
Sbjct: 640 VASVLTETEPTESGAYVLLSNIYAEKGDWGAVARVRRQMRERGVKKEVGFSWVDAG 695



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 124/455 (27%), Positives = 221/455 (48%), Gaps = 14/455 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEM 101
           +++  N  +  + + G +++A+K+F+EMPARD+V++N L+ G  +      + + ++  M
Sbjct: 182 DVFVGNALVTAYSRGGLMDAARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRM 241

Query: 102 VSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +  G ++    +  SV+  C   G    G QIH   + LG   ++ I + LV +Y + G 
Sbjct: 242 LKQGDVRPDRISVCSVIPACGAEGKLELGRQIHGFAVKLGVEGHVSIANVLVAMYYKCGT 301

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LF+ + ER++ +W  ++    E     + + ++N M+ +GV PN ++F  M+  
Sbjct: 302 PGCARRLFEFMGERDVISWTTVMSMDGE-----DAVSLFNGMRRDGVAPNEVTFVAMLSS 356

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                   EG+ +H+  +K    D     AN+L+  Y+    + +A+  F  +P  ++I+
Sbjct: 357 MPGDCPAREGQMIHAVCLKTSLSD-KAAAANSLITMYAKLRRMDDARMIFSLMPHSEIIA 415

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF--ASRTGNVYFGKQIHGY 338
           WN+++S YA  ++  DALE F  M    K P+  +F   L+   A  T ++ +G+  H  
Sbjct: 416 WNALISGYAQNEMCQDALEAFLAMMKIMK-PNETTFASILSAVTAVETVSMAYGQMYHCQ 474

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             KLG    S +V  AL DMY K   +E S   F     RSL    +++++    GN   
Sbjct: 475 ALKLGLG-ASEYVSGALIDMYAKRGSLEESWKAFGETVHRSLIAWTAIISANSKHGNYDA 533

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            V +F  MV  G+  D V L + L A   S   +LG   +    A K G E        +
Sbjct: 534 VVSLFNDMVGSGVAPDGVVLLSVLTACRYSGFVSLGR-EIFDSMAAKHGAELWPEHYACV 592

Query: 459 MDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNG 492
           +D   R G +E + ++  ++PS P+V    S++  
Sbjct: 593 VDMLGRAGRLEEAEELMLQMPSGPSVSALQSLLGA 627



 Score =  100 bits (248), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 144/295 (48%), Gaps = 14/295 (4%)

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLC 307
           V N+L   Y+   S   A + F      D  S+N+I+S   D D   DAL    RM +  
Sbjct: 86  VTNSLAARYAKGNSFPAAARVFAAARSRDTRSYNTILSATPDPD---DALAFAARMLRTG 142

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             RP   +F   L+ A+  G  +  +Q+H   ++ G     V V +AL   Y +  ++++
Sbjct: 143 DVRPDAVTFTVTLSLAAGRGEAHLVRQLHALASRAGIAT-DVFVGNALVTAYSRGGLMDA 201

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIK-DAVEMFGFMVDEG-IGLDEVTLSTTLKAL 425
           +  VFE  P R L   N+L+  L   G    + + +F  M+ +G +  D +++ + + A 
Sbjct: 202 ARKVFEEMPARDLVSWNALVCGLAQDGECSAEVIRVFLRMLKQGDVRPDRISVCSVIPAC 261

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
                  LG  R +H  A+K G E +++++  L+  Y +CG    + ++FE +   +V+ 
Sbjct: 262 GAEGKLELG--RQIHGFAVKLGVEGHVSIANVLVAMYYKCGTPGCARRLFEFMGERDVIS 319

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           +T++M+       G +A+ +   M + G+ P++VTF+ +L+        +EGQ++
Sbjct: 320 WTTVMSMD-----GEDAVSLFNGMRRDGVAPNEVTFVAMLSSMPGDCPAREGQMI 369


>gi|242092246|ref|XP_002436613.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
 gi|241914836|gb|EER87980.1| hypothetical protein SORBIDRAFT_10g005800 [Sorghum bicolor]
          Length = 683

 Score =  290 bits (741), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 187/662 (28%), Positives = 326/662 (49%), Gaps = 23/662 (3%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           +LLP   T+ +L      ++  +  LLL S       L+ Y++          G L SA+
Sbjct: 34  RLLPSCGTLPSLRVLHARLLTHTQGLLLGSLRARTKLLSCYAA---------LGDLASAR 84

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESASTF--SSVLSVCS 121
            +FD  P  D  +Y +++    +     +A+ L+ +M       E+   F  S  L  C 
Sbjct: 85  MVFDGTPRPDAYSYGVMLWCLVQAERHAEAVALHQDMRRRRPCPEAQDDFVLSLALKACI 144

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
            +  Y  G ++HC  + +G G + ++ + LVD+Y + G    A  +F+ +P RN+ +W  
Sbjct: 145 RSADYGYGTRLHCDAVKVG-GADGFVMNSLVDMYAKAGDLECARKVFERIPGRNVVSWTS 203

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ML    +     + L ++NKM+ + V P+  +   ++  CS  + L +G+ +H  VIK G
Sbjct: 204 MLSGCVQNGFAADGLLLFNKMRQDNVPPSEYTIATVITACSALIGLHQGRWMHGSVIKQG 263

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  N F++ AL+D Y  CG L +A+  FD +   D++ W +++  Y       DAL LF
Sbjct: 264 LMS-NSFISAALLDMYVKCGELEDAQCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLF 322

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
              +     P+  +    L+ +++  ++  G+ IHG   KLG    +V V +AL DMY K
Sbjct: 323 LDKKFANIVPNSVTIATVLSASAQLRDLSLGRSIHGIAVKLGLVEYTV-VVNALVDMYAK 381

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  +  +  +F S   + +   NS+++    +    DA+ +F  M  +G   D +++   
Sbjct: 382 CQAVSEANRIFGSISNKDVVAWNSMLSGYAENNMCNDALMLFKQMSLKGPSPDAISVVHA 441

Query: 422 LKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           L     SAS  LG     +  H  A+K  F SNI VS +L++ Y++CG +  + +VF+++
Sbjct: 442 L-----SASVCLGDLLIGKSFHGYAVKHAFLSNIYVSTALLNLYNKCGDLPSARRVFDEM 496

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              N V + +++ GY   G    ++D+   M++ G+ P+ V F  +L+ C+H+GMV   +
Sbjct: 497 NDRNSVTWCAMIGGYGMQGDSAGSIDLFGEMLKDGVHPNDVAFTSILSTCSHTGMVTAAK 556

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F+SM   + I    +HY+CM+D+L RAG L++A E +   P   D  +W + L  C +
Sbjct: 557 RYFDSMAQHFNITPSMKHYACMVDVLARAGNLEEALEFIDNMPMQADTSVWGAFLHGCEL 616

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H     G      +M L P    +Y  +SN Y+  G +E S  IR     + L +  G+S
Sbjct: 617 HSRLQFGEEAIKRMMVLHPERPDLYVLISNLYTSNGMWEKSQAIRRWMQEKGLVKLPGYS 676

Query: 659 LI 660
            I
Sbjct: 677 SI 678


>gi|356552027|ref|XP_003544373.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Glycine max]
          Length = 986

 Score =  290 bits (741), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 197/664 (29%), Positives = 326/664 (49%), Gaps = 56/664 (8%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPAR--DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE 108
           I  ++ S     A  L + +P     +  +N LI        P+    LY +M S G   
Sbjct: 198 IGTYIASNSTAYAILLLERLPPSPSSVFWWNQLIRRALHLGSPRDVFTLYRQMKSLGWTP 257

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
              TF  V   C+N    + G  +H  V   GF  N+++ + +V +Y + G    A ++F
Sbjct: 258 DHYTFPFVFKACANLSSLSLGASLHATVSRSGFASNVFVCNAVVSMYGKCGALRHAHNMF 317

Query: 169 DELPER---NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIG 224
           D+L  R   +L +WN ++ A+   S  +  L +++KM    +  P+ +S   ++  C+  
Sbjct: 318 DDLCHRGIQDLVSWNSVVSAYMWASDANTALALFHKMTTRHLMSPDVISLVNILPACASL 377

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
                G+Q+H   I+ G VD ++FV NA+VD Y+ CG + EA K F  +   DV+SWN++
Sbjct: 378 AASLRGRQVHGFSIRSGLVD-DVFVGNAVVDMYAKCGKMEEANKVFQRMKFKDVVSWNAM 436

Query: 285 VSIYADYDLIFDALELFFRM---------------------------------QLCR--K 309
           V+ Y+    +  AL LF RM                                 Q+C    
Sbjct: 437 VTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVFRQMCDCGS 496

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-----GFDHGS--VHVQSALTDMYGKC 362
           RP++ + V  L+     G +  GK+ H Y  K      G D G+  + V + L DMY KC
Sbjct: 497 RPNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKC 556

Query: 363 NVIESSVAVFESA--PGRSLECCNSLMTSLLHSGNIKDAVEMFG--FMVDEGIGLDEVTL 418
              E +  +F+S     R +     ++      G+  +A+++F   F +D+ I  ++ TL
Sbjct: 557 QSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTL 616

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFES-NIAVSCSLMDAYSRCGHIELSHQVFEK 477
           S  L A +  A+   G  R +H   +++ + S  + V+  L+D YS+ G ++ +  VF+ 
Sbjct: 617 SCALVACARLAALRFG--RQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDN 674

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +P  N V +TS+M GY  +G G +AL + + M +  L+PD +TFL VL  C+HSGMV  G
Sbjct: 675 MPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHG 734

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
              FN M   +G+D   +HY+CM+D+ GRAG L +A +L+ + P     ++W +LL +CR
Sbjct: 735 INFFNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLSACR 794

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           +H N  +G   AN L+ELE  +   Y+ +SN Y+    ++   +IR T     + +  G 
Sbjct: 795 LHSNVELGEFAANRLLELESGNDGSYTLLSNIYANARRWKDVARIRYTMKRTGIKKRPGC 854

Query: 658 SLIE 661
           S I+
Sbjct: 855 SWIQ 858



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 119/505 (23%), Positives = 225/505 (44%), Gaps = 60/505 (11%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYLYD 99
           N++  N  +  + K G L  A  +FD++  R   D+V++N ++S          AL L+ 
Sbjct: 293 NVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALALFH 352

Query: 100 EMVS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +M + H +     +  ++L  C++      G Q+H   +  G   ++++G+ +VD+Y + 
Sbjct: 353 KMTTRHLMSPDVISLVNILPACASLAASLRGRQVHGFSIRSGLVDDVFVGNAVVDMYAKC 412

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE---------- 208
           G    A  +F  +  +++ +WN M+  + +  R +  L ++ +M  E +E          
Sbjct: 413 GKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVI 472

Query: 209 -------------------------PNGLSFCYMVRGC-SIGMLLDEGKQLHSHVIKL-- 240
                                    PN ++   ++  C S+G LL  GK+ H + IK   
Sbjct: 473 TGYAQRGQGCEALDVFRQMCDCGSRPNVVTLVSLLSACVSVGALL-HGKETHCYAIKFIL 531

Query: 241 -------GWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVD-DVISWNSIVSIYADY 291
                  G  D+ +   N L+D Y+ C S   A+K FD + P D DV++W  ++  YA +
Sbjct: 532 NLDGPDPGADDLKVI--NGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQH 589

Query: 292 DLIFDALELF---FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
               +AL+LF   F+M    K P+  +    L   +R   + FG+Q+H YV +  +    
Sbjct: 590 GDANNALQLFSGMFKMDKSIK-PNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVM 648

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           + V + L DMY K   ++++  VF++ P R+     SLMT     G  +DA+ +F  M  
Sbjct: 649 LFVANCLIDMYSKSGDVDTAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRK 708

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
             +  D +T    L A S S   + G     +  +   G +        ++D + R G +
Sbjct: 709 VPLVPDGITFLVVLYACSHSGMVDHG-INFFNRMSKDFGVDPGPEHYACMVDLWGRAGRL 767

Query: 469 ELSHQVFEKIP-SPNVVCFTSIMNG 492
             + ++  ++P  P  V + ++++ 
Sbjct: 768 GEAMKLINEMPMEPTPVVWVALLSA 792



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 186/391 (47%), Gaps = 25/391 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR----DMVTYNLLISGCGKFRHPKQALYLY 98
           ++ S N  +  + ++G L  A  LF+ M       D+VT+  +I+G  +     +AL ++
Sbjct: 429 DVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVTWTAVITGYAQRGQGCEALDVF 488

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP-------- 150
            +M   G + +  T  S+LS C + G    G + HC   ++ F LNL    P        
Sbjct: 489 RQMCDCGSRPNVVTLVSLLSACVSVGALLHGKETHC--YAIKFILNLDGPDPGADDLKVI 546

Query: 151 --LVDLYMRMGPSVRALDLFDEL--PERNLATWNLMLRAFCELSRPDEVLRMYNKM--KA 204
             L+D+Y +   +  A  +FD +   +R++ TW +M+  + +    +  L++++ M    
Sbjct: 547 NGLIDMYAKCQSTEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMD 606

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
           + ++PN  +    +  C+    L  G+Q+H++V++  +  V +FVAN L+D YS  G + 
Sbjct: 607 KSIKPNDFTLSCALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVD 666

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
            A+  FD +P  + +SW S+++ Y  +    DAL +F  M+     P   +F+  L   S
Sbjct: 667 TAQIVFDNMPQRNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACS 726

Query: 325 RTGNVYFGKQIHGYVTK-LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
            +G V  G      ++K  G D G  H  + + D++G+   +  ++ +    P   +E  
Sbjct: 727 HSGMVDHGINFFNRMSKDFGVDPGPEHY-ACMVDLWGRAGRLGEAMKLINEMP---MEPT 782

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
             +  +LL +  +   VE+  F  +  + L+
Sbjct: 783 PVVWVALLSACRLHSNVELGEFAANRLLELE 813



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/294 (25%), Positives = 138/294 (46%), Gaps = 15/294 (5%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC--------QPNPQLN-IYSSNRTIDDFVKSG 58
           P V T+ +L   C S+  L        Y          P+P  + +   N  ID + K  
Sbjct: 498 PNVVTLVSLLSACVSVGALLHGKETHCYAIKFILNLDGPDPGADDLKVINGLIDMYAKCQ 557

Query: 59  HLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQALYLYDEM--VSHGIKESASTFS 114
               A+K+FD +    RD+VT+ ++I G  +      AL L+  M  +   IK +  T S
Sbjct: 558 STEVARKMFDSVSPKDRDVVTWTVMIGGYAQHGDANNALQLFSGMFKMDKSIKPNDFTLS 617

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFG-LNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             L  C+       G Q+H  VL   +G + L++ + L+D+Y + G    A  +FD +P+
Sbjct: 618 CALVACARLAALRFGRQVHAYVLRNFYGSVMLFVANCLIDMYSKSGDVDTAQIVFDNMPQ 677

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           RN  +W  ++  +    R ++ LR++++M+   + P+G++F  ++  CS   ++D G   
Sbjct: 678 RNAVSWTSLMTGYGMHGRGEDALRVFDEMRKVPLVPDGITFLVVLYACSHSGMVDHGINF 737

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV-ISWNSIVS 286
            + + K   VD        +VD +   G L EA K  + +P++   + W +++S
Sbjct: 738 FNRMSKDFGVDPGPEHYACMVDLWGRAGRLGEAMKLINEMPMEPTPVVWVALLS 791



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 80/324 (24%), Positives = 149/324 (45%), Gaps = 12/324 (3%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSI 284
           L   K LH   I  G +     +A  L+  Y A  S   A    + +P     V  WN +
Sbjct: 174 LAHAKLLHQQSIMQGLL---FHLATNLIGTYIASNSTAYAILLLERLPPSPSSVFWWNQL 230

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +          D   L+ +M+     P   +F       +   ++  G  +H  V++ GF
Sbjct: 231 IRRALHLGSPRDVFTLYRQMKSLGWTPDHYTFPFVFKACANLSSLSLGASLHATVSRSGF 290

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE---CCNSLMTSLLHSGNIKDAVE 401
              +V V +A+  MYGKC  +  +  +F+    R ++     NS++++ + + +   A+ 
Sbjct: 291 A-SNVFVCNAVVSMYGKCGALRHAHNMFDDLCHRGIQDLVSWNSVVSAYMWASDANTALA 349

Query: 402 MFGFMVDEGI-GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           +F  M    +   D ++L   L A +  A++  G  R +H  +I+SG   ++ V  +++D
Sbjct: 350 LFHKMTTRHLMSPDVISLVNILPACASLAASLRG--RQVHGFSIRSGLVDDVFVGNAVVD 407

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG +E +++VF+++   +VV + +++ GYS+ G    AL + E M +  +  D VT
Sbjct: 408 MYAKCGKMEEANKVFQRMKFKDVVSWNAMVTGYSQAGRLEHALSLFERMTEENIELDVVT 467

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSM 544
           +  V+ G    G   E   VF  M
Sbjct: 468 WTAVITGYAQRGQGCEALDVFRQM 491


>gi|49387750|dbj|BAD26238.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190136|gb|EEC72563.1| hypothetical protein OsI_05996 [Oryza sativa Indica Group]
          Length = 803

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 184/671 (27%), Positives = 327/671 (48%), Gaps = 50/671 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M +  LLP   T+ ++   C  +  L           +     N +  N  +  + K G 
Sbjct: 132 MRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYTKCGS 191

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A +LF  M   + V++  ++ G  +      AL L+  M   G+     + SSVL  
Sbjct: 192 VGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGA 251

Query: 120 CSNA--------GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           C+ A          +  G  IH  V+  GFG + ++G+ L+D+Y +      A+ +F+ L
Sbjct: 252 CAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESL 311

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           P   + +WN+++  F +     + + + + M+  G EPN +++  ++  C       + +
Sbjct: 312 PSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCI------KAR 365

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +HS                              A+  FD I    V +WN+++S Y   
Sbjct: 366 DVHS------------------------------ARAMFDKISRPSVTTWNTLLSGYCQE 395

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           +   D +ELF RMQ    +P   +    L+  S+ G + FG+Q+H    +    H  + V
Sbjct: 396 EQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFGRQVHSASVRF-LLHNDMFV 454

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL-LHSGNIKDAVEMFGFMVDEG 410
            S L DMY KC  I  + ++F     R + C NS+++ L +HS N K+A + F  M + G
Sbjct: 455 ASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLN-KEAFDFFKQMRENG 513

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           I   E + ++ + + S  +S   G  R +H   +K G++ N+ V  +L+D Y++CG+++ 
Sbjct: 514 IMPTESSYASMINSCSRLSSIPHG--RQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMDD 571

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +   F+ +   N+V +  +++GY++NG+G +A+++ E M+     PD VTF+ VL GC+H
Sbjct: 572 ARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCSH 631

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG+V +    FNSM++ YGI    +HY+C+ID LGRAG   + E L+ + P   D ++W 
Sbjct: 632 SGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIWE 691

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
            LL +C VH N  +G+  A  L  ++P + + Y  +SN Y+ +G    +  +R     R 
Sbjct: 692 VLLAACVVHHNAELGKCAAEHLFRIDPKNPSPYVLLSNIYASLGRHGDASAVRALMSNRG 751

Query: 651 LTRDIGHSLIE 661
           + +  G+S I+
Sbjct: 752 VVKGRGYSWID 762



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 130/547 (23%), Positives = 250/547 (45%), Gaps = 55/547 (10%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK---QALY 96
           P  N YS N  +    ++G L++A+ L   MP R+ V++N +IS     R P    +A+ 
Sbjct: 70  PSPNDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALA--RSPGDGGEAVE 127

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           +Y  M + G+  +  T +SVLS C       +G + H   + +G   N ++ + L+ +Y 
Sbjct: 128 MYGRMRAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLDANQFVENALLGMYT 187

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A+ LF  +   N  ++  M+    +    D+ LR++ +M   GV  + +S   
Sbjct: 188 KCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSS 247

Query: 217 MVRGC--------SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           ++  C        S+      G+ +H+ V++ G+   +  V N+L+D Y+ C  + EA K
Sbjct: 248 VLGACAQACATDYSVARAFRLGQAIHALVVRKGF-GSDQHVGNSLIDMYTKCVEMDEAVK 306

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F+ +P   ++SWN +++ +        A+E+   MQ                       
Sbjct: 307 VFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQ----------------------- 343

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
                       + GF+   V   + L     K   + S+ A+F+     S+   N+L++
Sbjct: 344 ------------EAGFEPNEVTYSNLLASCI-KARDVHSARAMFDKISRPSVTTWNTLLS 390

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
                   +D +E+F  M  + +  D  TL+  L + S     + G  R +H  +++   
Sbjct: 391 GYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGILDFG--RQVHSASVRFLL 448

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            +++ V+  L+D YS+CG I ++  +F K+   +VVC+ SI++G + + + +EA D  + 
Sbjct: 449 HNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQ 508

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
           M + G++P + ++  ++  C+    +  G Q+    MK   G D +    S +IDM  + 
Sbjct: 509 MRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKD--GYDQNVYVGSALIDMYAKC 566

Query: 568 GILDKAE 574
           G +D A 
Sbjct: 567 GNMDDAR 573



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 125/499 (25%), Positives = 216/499 (43%), Gaps = 87/499 (17%)

Query: 144 NLYIGSPLVDLYMRMGPSVRAL-------------------------------DLFDELP 172
           + ++ + LV+LY R G    AL                               DL   +P
Sbjct: 42  DTFLANRLVELYSRAGLPRHALLAFRALPSPNDYSYNAALSAACRAGDLDAARDLLGGMP 101

Query: 173 ERNLATWNLMLRAFCELSRPD--EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            RN  +WN ++ A    S  D  E + MY +M+AEG+ P   +   ++  C     L +G
Sbjct: 102 RRNAVSWNTVISALAR-SPGDGGEAVEMYGRMRAEGLLPTHFTLASVLSACGGLAALGDG 160

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           ++ H   +K+G +D N FV NAL+  Y+ CGS+ +A + F  +   + +S+ +++   A 
Sbjct: 161 RRCHGVAVKVG-LDANQFVENALLGMYTKCGSVGDAVRLFYGMARPNEVSFTAMMGGLAQ 219

Query: 291 YDLIFDALELFFRMQLCRK----RP-SIRSFVEFLNFASRTG-----NVYFGKQIHGYVT 340
              I DAL LF RM  CR      P S+ S +     A  T          G+ IH  V 
Sbjct: 220 TGSIDDALRLFARM--CRSGVPVDPVSVSSVLGACAQACATDYSVARAFRLGQAIHALVV 277

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           + GF     HV ++L DMY KC  ++ +V VFES P  ++   N L+T     G+   AV
Sbjct: 278 RKGFGSDQ-HVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAV 336

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           E+   M + G   +EVT                                SN+  SC    
Sbjct: 337 EVLSLMQEAGFEPNEVTY-------------------------------SNLLASC---- 361

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
              +   +  +  +F+KI  P+V  + ++++GY +    ++ +++   M  + + PD+ T
Sbjct: 362 --IKARDVHSARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTT 419

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
              +L+ C+  G++  G+ V +S    + +  D    S ++DM  + G +  A  +  + 
Sbjct: 420 LAVILSSCSKLGILDFGRQV-HSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSIFNKM 478

Query: 581 PGGGDCMMWSSLLRSCRVH 599
               D + W+S++    +H
Sbjct: 479 T-ERDVVCWNSIISGLTIH 496



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 100/414 (24%), Positives = 192/414 (46%), Gaps = 29/414 (7%)

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF-DALELFFRM 304
           N +  NA +      G L  A+     +P  + +SWN+++S  A       +A+E++ RM
Sbjct: 73  NDYSYNAALSAACRAGDLDAARDLLGGMPRRNAVSWNTVISALARSPGDGGEAVEMYGRM 132

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +     P+  +    L+       +  G++ HG   K+G D  +  V++AL  MY KC  
Sbjct: 133 RAEGLLPTHFTLASVLSACGGLAALGDGRRCHGVAVKVGLD-ANQFVENALLGMYTKCGS 191

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +V +F      +     ++M  L  +G+I DA+ +F  M   G+ +D V++S+ L A
Sbjct: 192 VGDAVRLFYGMARPNEVSFTAMMGGLAQTGSIDDALRLFARMCRSGVPVDPVSVSSVLGA 251

Query: 425 LSVSASANLGSCRL------LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
            + + + +    R       +H   ++ GF S+  V  SL+D Y++C  ++ + +VFE +
Sbjct: 252 CAQACATDYSVARAFRLGQAIHALVVRKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESL 311

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           PS  +V +  ++ G+ + G   +A+++L +M + G  P++VT+  +LA C  +  V   +
Sbjct: 312 PSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFEPNEVTYSNLLASCIKARDVHSAR 371

Query: 539 LVFNSMKS---------VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            +F+ +           + G   + QH    I++  R          +Q      D    
Sbjct: 372 AMFDKISRPSVTTWNTLLSGYCQEEQHQD-TIELFRR----------MQHQNVQPDRTTL 420

Query: 590 SSLLRSCRVHGNEIIGRRVANILME-LEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
           + +L SC   G    GR+V +  +  L   D  V S + + YS+ G+  ++  I
Sbjct: 421 AVILSSCSKLGILDFGRQVHSASVRFLLHNDMFVASGLVDMYSKCGQIGIARSI 474


>gi|297834380|ref|XP_002885072.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297330912|gb|EFH61331.1| hypothetical protein ARALYDRAFT_318289 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1134

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 159/526 (30%), Positives = 288/526 (54%), Gaps = 6/526 (1%)

Query: 140 GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY 199
           G GLNL   + L+D+Y +    + A  +FD +PERN+ +W  ++         +  L ++
Sbjct: 399 GSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLF 458

Query: 200 NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA 259
            +M  +G+ PN  +F   ++ C +   L++G Q+H   +K+G+ ++ + V N+LVD YS 
Sbjct: 459 TEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGF-EMMVEVGNSLVDMYSK 517

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR--KRPSIRSFV 317
           CG + EA+K F ++    +ISWN++++ Y        AL  F  MQ  +  +RP   +  
Sbjct: 518 CGRINEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLT 577

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFD-HGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
             L   S TG +Y GKQIHG++ + GF    S  +  +L D+Y KC  + S+   F+   
Sbjct: 578 SLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIK 637

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
            +++   +SL+      G+  +A+ +F  + +    +D   LS+ +   +  A    G  
Sbjct: 638 EKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQ 697

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
                  + SG E+  +VS SL+D Y +CG ++ + + F ++   +V+ +T ++ GY ++
Sbjct: 698 MQALVVKLPSGLET--SVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKH 755

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
           G+G++A+ +   M++  + PD+V +L VL+ C+HSGM+KEG+ +F+ +    GI    +H
Sbjct: 756 GLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEH 815

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           Y+C++D+LGRAG L +A+ L+   P   +  +W +LL  CRVHG+  +G+ V  IL+ ++
Sbjct: 816 YACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRID 875

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
             + A Y  +SN Y + G +      RE    + L ++ G S +E+
Sbjct: 876 GKNPANYVMMSNLYGQAGYWNEQGNARELGSIKGLQKEAGMSWVEI 921



 Score =  166 bits (420), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 133/465 (28%), Positives = 219/465 (47%), Gaps = 28/465 (6%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           LN+ +SN  ID + K      A K+FD MP R++V++  L+SG         +L L+ EM
Sbjct: 402 LNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSLFTEM 461

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              GI  +  TFS+ L  C       +G+QIH   L +GF + + +G+ LVD+Y + G  
Sbjct: 462 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRI 521

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE--PNGLSFCYMVR 219
             A  +F  +  R+L +WN M+  +         L  +  M+   ++  P+  +   +++
Sbjct: 522 NEAEKVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLK 581

Query: 220 GCSIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
            CS   ++  GKQ+H  +++ G+    +  +  +LVD Y  CG+L  A+K+FD I    +
Sbjct: 582 ACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTM 641

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV------EFLNFASRTGNVYFG 332
           ISW+S++  YA      +A+ LF R+Q       I SFV       F +FA     +  G
Sbjct: 642 ISWSSLILGYAQEGDFVEAMGLFKRLQ--ELSSQIDSFVLSSIIGVFADFAL----LQQG 695

Query: 333 KQIHGYVTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
           KQ+   V KL  G +     V ++L DMY KC +++ +   F     + +     ++T  
Sbjct: 696 KQMQALVVKLPSGLE---TSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGY 752

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSG 447
              G  K AV +F  M+   I  DEV     L A S S     G     +LL    IK  
Sbjct: 753 GKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPR 812

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
            E    V    +D   R G ++ +  + + +P  PNV  + ++++
Sbjct: 813 VEHYACV----VDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLS 853



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 180/376 (47%), Gaps = 6/376 (1%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           + P   T +T    C  +  L   L +  +C +   ++ +   N  +D + K G +N A+
Sbjct: 466 IYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLVDMYSKCGRINEAE 525

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF--SSVLSVCSN 122
           K+F  M  R ++++N +I+G     +  +AL  +  M    IKE    F  +S+L  CS+
Sbjct: 526 KVFRWMVGRSLISWNAMIAGYVHAGYGSRALATFGMMQEAKIKERPDEFTLTSLLKACSS 585

Query: 123 AGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
            G    G QIH  ++  GF    +  I   LVDLY++ G    A   FD++ E+ + +W+
Sbjct: 586 TGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGNLFSARKAFDQIKEKTMISWS 645

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            ++  + +     E + ++ +++    + +      ++   +   LL +GKQ+ + V+KL
Sbjct: 646 SLILGYAQEGDFVEAMGLFKRLQELSSQIDSFVLSSIIGVFADFALLQQGKQMQALVVKL 705

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
               +   V+N+LVD Y  CG + EA+K F  + + DVISW  +++ Y  + L   A+ +
Sbjct: 706 P-SGLETSVSNSLVDMYLKCGLVDEAEKCFAEMQLKDVISWTVMITGYGKHGLGKKAVSI 764

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F +M      P    ++  L+  S +G +  G+++   + +       V   + + D+ G
Sbjct: 765 FNKMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETQGIKPRVEHYACVVDLLG 824

Query: 361 KCNVIESSVAVFESAP 376
           +   ++ +  + ++ P
Sbjct: 825 RAGRLKEAKHLVDTMP 840



 Score =  100 bits (249), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/297 (23%), Positives = 150/297 (50%), Gaps = 12/297 (4%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D +VK G+L SA+K FD++  + M++++ LI G  +     +A+ L+  +     +  +
Sbjct: 617 VDLYVKCGNLFSARKAFDQIKEKTMISWSSLILGYAQEGDFVEAMGLFKRLQELSSQIDS 676

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
              SS++ V ++     +G Q+   V+ L  GL   + + LVD+Y++ G    A   F E
Sbjct: 677 FVLSSIIGVFADFALLQQGKQMQALVVKLPSGLETSVSNSLVDMYLKCGLVDEAEKCFAE 736

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  +++ +W +M+  + +     + + ++NKM    +EP+ + +  ++  CS   ++ EG
Sbjct: 737 MQLKDVISWTVMITGYGKHGLGKKAVSIFNKMLRHNIEPDEVCYLAVLSACSHSGMIKEG 796

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS--- 286
           ++L S +++   +   +     +VD     G L EAK   D +P+  +V  W +++S   
Sbjct: 797 EELFSKLLETQGIKPRVEHYACVVDLLGRAGRLKEAKHLVDTMPIKPNVGIWQTLLSLCR 856

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++ D +L  +  ++  R+    K P+  ++V   N   + G  Y+ +Q  G   +LG
Sbjct: 857 VHGDIELGKEVGKILLRID--GKNPA--NYVMMSNLYGQAG--YWNEQ--GNARELG 905



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 36/137 (26%), Positives = 73/137 (53%), Gaps = 1/137 (0%)

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           SG   N+  S  L+D Y +C    ++++VF+ +P  NVV +T++M+G+  NG    +L +
Sbjct: 398 SGSGLNLITSNYLIDMYCKCREQLIAYKVFDSMPERNVVSWTALMSGHVLNGDLNGSLSL 457

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              M ++G+ P++ TF   L  C     +++G L  +      G +   +  + ++DM  
Sbjct: 458 FTEMGRQGIYPNEFTFSTNLKACGLLNALEKG-LQIHGFCLKIGFEMMVEVGNSLVDMYS 516

Query: 566 RAGILDKAEELLQQTPG 582
           + G +++AE++ +   G
Sbjct: 517 KCGRINEAEKVFRWMVG 533


>gi|255542116|ref|XP_002512122.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223549302|gb|EEF50791.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 800

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 172/606 (28%), Positives = 321/606 (52%), Gaps = 6/606 (0%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L++AKK+FD M  RD+V+++ +IS         + L ++  +VS  ++  + T  S+ 
Sbjct: 148 GCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESSEGLEMFRLLVSQDVELDSVTMLSIA 207

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C   GF      +H  ++         +   LV +Y R      A  +F  +  R++A
Sbjct: 208 GACGELGFLRLAKSVHGCIIRQRIETRGPLNDALVLMYSRCDDFSSAERIFSNMFNRSIA 267

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  M+  +       + L+++ +M    V PN ++   ++  C+   LL EGK +H + 
Sbjct: 268 SWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNAVTIMAVLSSCAGFNLLREGKSVHCYA 327

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K   +D +  +  AL+++Y+  G L   +K    I   ++ISWN ++S+YA   L  +A
Sbjct: 328 VKHIDLDDDS-LGPALIEYYAQFGKLSYCEKVLHTIGKRNIISWNMLISVYASQGLFKEA 386

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L +F +MQ   + P   S    ++  +  G ++ G QIHGY  K         VQ++L D
Sbjct: 387 LGIFVQMQRQGQIPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHI--LDEFVQNSLID 444

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  ++ +  +F+    +S+   NS++      GN  +A+ +F  M    + ++EVT
Sbjct: 445 MYSKCGHVDLAYLIFDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVT 504

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
             T ++A   S   +L   + LH   I  G + ++ +  +L+D Y++CG + ++H+VF+ 
Sbjct: 505 FLTAIQA--CSHMGHLEKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDS 562

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +   +VV +++++ G   +G    A+ +   MIQR + P+ +TF+ +L+ C+HSG V+EG
Sbjct: 563 MSERSVVSWSAMIGGCGMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEG 622

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           +  FNSMK+ + ++ + +H++CM+D+L RAG LD+A  ++   P   +  +W +LL  CR
Sbjct: 623 KFYFNSMKN-FEVEPNLEHFACMVDLLSRAGDLDEAYRIINSMPFPAEASIWGALLNGCR 681

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           +H    + R +   L+++   D   Y+ +SN Y+E G ++VS ++R       L +  G+
Sbjct: 682 IHQRMDMIRNIERDLLDMRTDDTGYYTLLSNIYAEEGNWDVSRKVRSAMKGIGLKKVPGY 741

Query: 658 SLIEVN 663
           S IE++
Sbjct: 742 STIELD 747



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 163/633 (25%), Positives = 304/633 (48%), Gaps = 27/633 (4%)

Query: 16  LAPTCTSIVPLS--SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR 73
           L  +CTS+ PL+   S LL +    +PQ    +S + I+ + + G L S+K +F+     
Sbjct: 7   LFRSCTSLRPLTLLHSHLLVTGLHHDPQ----ASTKLIESYSQIGCLQSSKLVFETFQNP 62

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           D   + +LI          +A+ LY++M+   I  S   FSSVL  C+  G    G ++H
Sbjct: 63  DSFMWAVLIKCHVWSNFCGEAISLYNKMIYKQIPISDFIFSSVLRACAGFGNLDVGEEVH 122

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            R++  G  ++  + + L+ +Y  +G    A  +FD +  R+L +W+ ++  + +     
Sbjct: 123 GRIIKYGLDVDHVVETSLLGMYGDLGCLSNAKKVFDNMTTRDLVSWSSIISCYVDNGESS 182

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           E L M+  + ++ VE + ++   +   C     L   K +H  +I+   ++    + +AL
Sbjct: 183 EGLEMFRLLVSQDVELDSVTMLSIAGACGELGFLRLAKSVHGCIIRQR-IETRGPLNDAL 241

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           V  YS C     A++ F  +    + SW +++S Y        AL++F  M   +  P+ 
Sbjct: 242 VLMYSRCDDFSSAERIFSNMFNRSIASWTAMISCYNRSRWFKQALQVFVEMLEFKVAPNA 301

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
            + +  L+  +    +  GK +H Y  K +  D  S  +  AL + Y +   +     V 
Sbjct: 302 VTIMAVLSSCAGFNLLREGKSVHCYAVKHIDLDDDS--LGPALIEYYAQFGKLSYCEKVL 359

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
            +   R++   N L++     G  K+A+ +F  M  +G   D  +LS++     +SA AN
Sbjct: 360 HTIGKRNIISWNMLISVYASQGLFKEALGIFVQMQRQGQIPDSFSLSSS-----ISACAN 414

Query: 433 LGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           +G   L   +H  AIK        V  SL+D YS+CGH++L++ +F++I S +VV + S+
Sbjct: 415 VGLLWLGHQIHGYAIKRHILDEF-VQNSLIDMYSKCGHVDLAYLIFDRIQSKSVVAWNSM 473

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + G+S+ G   EA+ + + M    L  ++VTFL  +  C+H G +++G+ + + + + YG
Sbjct: 474 ICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHLEKGKWLHHKLIA-YG 532

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG--NEIIGRR 607
           +  D    + +IDM  + G L  A  +   +      + WS+++  C +HG  +  I   
Sbjct: 533 VKKDLFIDTALIDMYAKCGDLRIAHRVF-DSMSERSVVSWSAMIGGCGMHGDIDAAISLF 591

Query: 608 VANILMELEPVDFAVYSQVS----NFYSEIGEF 636
              I  E++P D    + +S    + Y E G+F
Sbjct: 592 AEMIQREMKPNDITFMNILSACSHSGYVEEGKF 624



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 64/268 (23%), Positives = 136/268 (50%), Gaps = 1/268 (0%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           +P   ++++    C ++  L     +  Y      L+ +  N  ID + K GH++ A  +
Sbjct: 399 IPDSFSLSSSISACANVGLLWLGHQIHGYAIKRHILDEFVQNSLIDMYSKCGHVDLAYLI 458

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD + ++ +V +N +I G  +  +  +A+ L+D+M  + +  +  TF + +  CS+ G  
Sbjct: 459 FDRIQSKSVVAWNSMICGFSQIGNSLEAIRLFDQMYLNCLDMNEVTFLTAIQACSHMGHL 518

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            +G  +H ++++ G   +L+I + L+D+Y + G    A  +FD + ER++ +W+ M+   
Sbjct: 519 EKGKWLHHKLIAYGVKKDLFIDTALIDMYAKCGDLRIAHRVFDSMSERSVVSWSAMIGGC 578

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                 D  + ++ +M    ++PN ++F  ++  CS    ++EGK  + + +K   V+ N
Sbjct: 579 GMHGDIDAAISLFAEMIQREMKPNDITFMNILSACSHSGYVEEGK-FYFNSMKNFEVEPN 637

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIP 274
           +     +VD  S  G L EA +  + +P
Sbjct: 638 LEHFACMVDLLSRAGDLDEAYRIINSMP 665


>gi|147856409|emb|CAN80331.1| hypothetical protein VITISV_018275 [Vitis vinifera]
          Length = 681

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 167/539 (30%), Positives = 288/539 (53%), Gaps = 13/539 (2%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G Q+H  ++  G+    ++ + LV++Y + G    AL LFD +P+RNL +W  M+    +
Sbjct: 24  GKQLHALLICAGYTPCTFLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQ 83

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
            S+  E +R +  M+  G  P   +F   +R C+    ++ GKQ+H   +K G +   +F
Sbjct: 84  NSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFG-IGSELF 142

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V + L D YS CG++ +A K F+ +P  D +SW +++  Y+      +AL  F +M    
Sbjct: 143 VGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEE 202

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
                      L          FG+ +H  V KLGF+   + V +ALTDMY K   +ES+
Sbjct: 203 VTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE-SDIFVGNALTDMYSKAGDMESA 261

Query: 369 VAVFESAPGRSLECCN-----SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
             VF    G   EC N      L+   + +  I+  + +F  +  +GI  +E T S+ +K
Sbjct: 262 SNVF----GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIK 317

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A +  A+   G+   LH   +K  F+ +  VS  L+D Y +CG +E + Q F++I  P  
Sbjct: 318 ACANQAALEQGT--QLHAQVMKINFDEDPFVSSILVDMYGKCGLLEHAIQAFDEIGDPTE 375

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           + + S+++ + ++G+G++A+   E M+ RG+ P+ +TF+ +L GC+H+G+V+EG   F S
Sbjct: 376 IAWNSLVSVFGQHGLGKDAIKFFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYS 435

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M   YG+    +HYSC+ID+LGRAG L +A+E + + P   +   W S L +CR+HG++ 
Sbjct: 436 MDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKE 495

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           +G+  A  L++LEP +      +SN Y+   ++E    +R       + +  G+S ++V
Sbjct: 496 MGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMRMRDGNVKKLPGYSWVDV 554



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/467 (27%), Positives = 217/467 (46%), Gaps = 8/467 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           + +N  ++ + K G L+ A KLFD MP R++V++  +ISG  +     +A+  +  M   
Sbjct: 41  FLTNHLVNMYSKCGELDHALKLFDTMPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRIC 100

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G   +   FSS +  C++ G    G Q+HC  L  G G  L++GS L D+Y + G    A
Sbjct: 101 GEVPTQFAFSSAIRACASLGSIEMGKQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDA 160

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F+E+P ++  +W  M+  + ++   +E L  + KM  E V  +    C  +  C   
Sbjct: 161 CKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGAL 220

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF-IPVDDVISWNS 283
                G+ +HS V+KLG+ + +IFV NAL D YS  G +  A   F       +V+S+  
Sbjct: 221 KACKFGRSVHSSVVKLGF-ESDIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTC 279

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++  Y + + I   L +F  ++     P+  +F   +   +    +  G Q+H  V K+ 
Sbjct: 280 LIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKIN 339

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           FD     V S L DMYGKC ++E ++  F+     +    NSL++     G  KDA++ F
Sbjct: 340 FDEDPF-VSSILVDMYGKCGLLEHAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKFF 398

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             MVD G+  + +T  + L   S +     G                    SC ++D   
Sbjct: 399 ERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSC-VIDLLG 457

Query: 464 RCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDML 506
           R G ++ + +   ++P  PN   + S +     +G   MG+ A + L
Sbjct: 458 RAGRLKEAKEFINRMPFEPNAFGWCSFLGACRIHGDKEMGKLAAEKL 504


>gi|296085026|emb|CBI28441.3| unnamed protein product [Vitis vinifera]
          Length = 913

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 193/660 (29%), Positives = 334/660 (50%), Gaps = 49/660 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++ SN  I+ +V+ G L SA+KLFDEM  R++VT+  LISG  +   P +A   + +MV
Sbjct: 133 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 192

Query: 103 SHGIKESASTFSSVLSVCSNAGFY--TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR-MG 159
             G   +   F S L  C  +G      G+QIH  +    +G ++ + + L+ +Y   + 
Sbjct: 193 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 252

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
            +  A  +FD +  RN  +WN ++  +           +++ M+ EG+   G SF     
Sbjct: 253 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGL---GFSFKPNDA 309

Query: 220 GCSIGMLLD---EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
                +L +   +G+++H+HVI+ G  D  + + N LV+ Y+  G++ +A   F+ +   
Sbjct: 310 FSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEK 369

Query: 277 DVISWNSIVSIYADYDLIFDALELF------------------------------FRMQL 306
           D +SWNS++S     +   DA E+F                              + +Q+
Sbjct: 370 DSVSWNSLISGLDQNECSEDAAEMFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLQM 429

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGK---QIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
            R    + S V F+N  S   ++   +   QIH  V K      +  + +AL   YGKC 
Sbjct: 430 MRGGWGL-SRVTFINILSAVSSLSLHEVSHQIHALVLKYCLSDDTA-IGNALLSCYGKCG 487

Query: 364 VIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
            +     +F   +  R     NS+++  +H+  +  A+++  FM+ +G  LD  T +T L
Sbjct: 488 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATIL 547

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A +  A+   G    +H C I++  ES++ V  +L+D YS+CG I+ + + FE +P  N
Sbjct: 548 SACASVATLERG--MEVHACGIRACLESDVVVGSALVDMYSKCGRIDYASRFFELMPLRN 605

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           V  + S+++GY+R+G G +AL +   M+  G  PD VTF+ VL+ C+H G V+EG   F 
Sbjct: 606 VYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPDHVTFVGVLSACSHVGFVEEGFEHFK 665

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS-CRVHG- 600
           SM  VY +    +H+SCM+D+LGRAG LD+  + +   P   + ++W ++L + CR +G 
Sbjct: 666 SMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVGDFINSMPMKPNVLIWRTVLGACCRANGR 725

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           N  +GRR A +L+ELEP +   Y  ++N Y+   ++E   + R       + ++ G S +
Sbjct: 726 NTELGRRAAEMLLELEPQNAVNYVLLANMYASGEKWEDVAKARTAMKEAAVKKEAGCSWV 785



 Score =  179 bits (455), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/570 (24%), Positives = 262/570 (45%), Gaps = 50/570 (8%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           S+ TF S+++    +    E  ++H + +  GF  NL++ + L+++Y+R+G    A  LF
Sbjct: 98  SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLF 157

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS----IG 224
           DE+  RNL TW  ++  + +  +PDE    +  M   G  PN  +F   +R C      G
Sbjct: 158 DEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSG 217

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNS 283
             L  G Q+H  + K  +   ++ V N L+  Y +C  S  +A+  FD I + + ISWNS
Sbjct: 218 CKL--GVQIHGLISKTRY-GSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNS 274

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           I+S+Y+       A +LF  MQ      S +    F  F+        G+++H +V + G
Sbjct: 275 IISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNDAFSEFSVLEEGRRKGREVHAHVIRTG 334

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            +   V + + L +MY K   I  + +VFE    +     NSL++ L  +   +DA EMF
Sbjct: 335 LNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAEMF 394

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASA--------------NLGSCRL----------- 438
             M +     D+V+ ++ + ALS S ++                G  R+           
Sbjct: 395 SLMPE----YDQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSS 450

Query: 439 ---------LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI-PSPNVVCFTS 488
                    +H   +K     + A+  +L+  Y +CG +    ++F ++  + + V + S
Sbjct: 451 LSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNS 510

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           +++GY  N +  +A+D++  M+Q+G   D  TF  +L+ C     ++ G  V ++     
Sbjct: 511 MISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERGMEV-HACGIRA 569

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN-EIIGRR 607
            +++D    S ++DM  + G +D A    +  P   +   W+S++     HG+ E   + 
Sbjct: 570 CLESDVVVGSALVDMYSKCGRIDYASRFFELMP-LRNVYSWNSMISGYARHGHGEKALKL 628

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFE 637
              ++++ +P D   +  V +  S +G  E
Sbjct: 629 FTRMMLDGQPPDHVTFVGVLSACSHVGFVE 658


>gi|413918610|gb|AFW58542.1| hypothetical protein ZEAMMB73_242801 [Zea mays]
          Length = 941

 Score =  289 bits (740), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 187/627 (29%), Positives = 337/627 (53%), Gaps = 17/627 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFD--EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +N  I  + K G L+SA ++F+  +  ARD+ ++N ++SGC +     +AL L+  M S 
Sbjct: 202 ANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSA 261

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G   ++ T  +VL VC+  G  + G ++H  +L  G  LN+   + LV +Y + G    A
Sbjct: 262 GFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCGSELNIQCNALLV-MYAKYGRVDSA 320

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           L +F ++ E++  +WN ML  + + S   E +  + +M   G +P+    C +    ++G
Sbjct: 321 LRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDFFGEMLQHGFQPD--HACVVSLSSALG 378

Query: 225 ML--LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
            L  L+ G++ H++ IK   +  ++ V N L+D Y  CGS+  + K F+ + + D ISW 
Sbjct: 379 HLSRLNNGREFHAYAIKQR-LHTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWT 437

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVT 340
           +I++ +A      +ALE+   +Q  ++   + S +    L       ++   KQ+H Y  
Sbjct: 438 TILACFAQSSRHSEALEMILELQ--KEGIMVDSMMIGSILETCCGLKSISLLKQVHCYAI 495

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           + G     + +++ L D+YG+C   + S+ +F+    + +    S++    ++G +  AV
Sbjct: 496 RNGLL--DLILENRLIDIYGECGEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAV 553

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M    I  D V L + L A++  +S   G  + +H   I+  F     V  SL+D
Sbjct: 554 FLFTEMQKANIQPDSVALVSILVAIAGLSSLTKG--KQVHGFLIRRNFPIEGPVVSSLVD 611

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS CG +  + +VFE+    +VV +T+++N    +G G++A+D+ + M+Q GL PD V+
Sbjct: 612 MYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHGKQAIDLFKRMLQTGLTPDHVS 671

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL +L  C+HS +V+EG+   + M S Y +   ++HY+C++D+LGR+G  ++A E ++  
Sbjct: 672 FLALLYACSHSKLVEEGKHYLDIMVSKYRLKPWQEHYACVVDILGRSGQTEEAYEFIKTM 731

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P      +W +LL +CRVH N  +    AN L+ELEP +   Y  VSN ++E+G++  + 
Sbjct: 732 PMDPKSAVWCALLGACRVHRNYGLAVVAANKLLELEPDNPGNYILVSNVFAEMGKWNNAK 791

Query: 641 QIRETALARKLTRDIGHSLIEV-NSCH 666
           + R     R L ++   S IE+ N+ H
Sbjct: 792 ETRTRMAERGLRKNPACSWIEIGNNIH 818



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 145/562 (25%), Positives = 267/562 (47%), Gaps = 31/562 (5%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-- 111
           + + G ++ A++LF+ MPAR + ++N L+          +A+ +Y  M +     SA   
Sbjct: 105 YGRCGRVDDARRLFNGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDG 164

Query: 112 -TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T +SVL  C   G    G ++H   + +G   +  + + L+ +Y + G    AL +F+ 
Sbjct: 165 CTLASVLKACGAEGDGRCGGEVHGLAVKVGLDKSTLVANALIGMYAKCGLLDSALRVFEW 224

Query: 171 LPE--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           L +  R++A+WN ++    +  R  E L ++  M++ G   N  +   +++ C+   LL 
Sbjct: 225 LQQDARDVASWNSVVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLS 284

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G++LH+ ++K G  ++NI   NAL+  Y+  G +  A + F  I   D ISWNS++S Y
Sbjct: 285 LGRELHAALLKCG-SELNI-QCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCY 342

Query: 289 ADYDLIFDALELFFRMQLCRKRPS---IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
                  +A++ F  M     +P    + S    L   SR  N   G++ H Y  K    
Sbjct: 343 VQNSFYAEAIDFFGEMLQHGFQPDHACVVSLSSALGHLSRLNN---GREFHAYAIKQRL- 398

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           H  + V + L DMY KC  IE S  VFES   R      +++     S    +A+EM   
Sbjct: 399 HTDLQVGNTLMDMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILE 458

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           +  EGI +D + + + L+      S +L   + +HC AI++G   ++ +   L+D Y  C
Sbjct: 459 LQKEGIMVDSMMIGSILETCCGLKSISL--LKQVHCYAIRNGL-LDLILENRLIDIYGEC 515

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G  + S  +F+++   ++V +TS++N  + NG    A+ +   M +  + PD V  + +L
Sbjct: 516 GEFDHSLNLFQRVEKKDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSIL 575

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQH------YSCMIDMLGRAGILDKAEELLQQ 579
                   + +G       K V+G    R         S ++DM    G ++ A  + ++
Sbjct: 576 VAIAGLSSLTKG-------KQVHGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFER 628

Query: 580 TPGGGDCMMWSSLLRSCRVHGN 601
                D ++W++++ +  +HG+
Sbjct: 629 AK-CKDVVLWTAMINATGMHGH 649



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 139/506 (27%), Positives = 244/506 (48%), Gaps = 36/506 (7%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL----YIGSPLVDLYMRMGPSVRALDLF 168
           +  VL + +      EG Q+H   ++ G  LN     ++ + LV +Y R G    A  LF
Sbjct: 60  YGWVLDLVAARRAAAEGRQVHAHAVTTG-SLNEDDDGFLATKLVFMYGRCGRVDDARRLF 118

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE---GVEPNGLSFCYMVRGCSIGM 225
           + +P R + +WN ++ A+       E +R+Y  M+A    G  P+G +   +++ C    
Sbjct: 119 NGMPARTVFSWNALVGAYLSSGSAGEAMRVYGAMRASAAPGSAPDGCTLASVLKACGAEG 178

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNS 283
               G ++H   +K+G +D +  VANAL+  Y+ CG L  A + F+++  D  DV SWNS
Sbjct: 179 DGRCGGEVHGLAVKVG-LDKSTLVANALIGMYAKCGLLDSALRVFEWLQQDARDVASWNS 237

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +VS         +AL LF  MQ      +  + V  L   +  G +  G+++H  + K G
Sbjct: 238 VVSGCVQNGRTLEALALFRGMQSAGFPMNSYTSVAVLQVCAELGLLSLGRELHAALLKCG 297

Query: 344 FDHGSVHVQ-SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            +   +++Q +AL  MY K   ++S++ VF     +     NS+++  + +    +A++ 
Sbjct: 298 SE---LNIQCNALLVMYAKYGRVDSALRVFGQIAEKDYISWNSMLSCYVQNSFYAEAIDF 354

Query: 403 FGFMVDEGIGLDE---VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           FG M+  G   D    V+LS+ L  LS      L + R  H  AIK    +++ V  +LM
Sbjct: 355 FGEMLQHGFQPDHACVVSLSSALGHLS-----RLNNGREFHAYAIKQRLHTDLQVGNTLM 409

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +CG IE S +VFE +   + + +T+I+  ++++    EAL+M+  + + G++ D +
Sbjct: 410 DMYIKCGSIECSAKVFESMGIRDHISWTTILACFAQSSRHSEALEMILELQKEGIMVDSM 469

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSV--YGIDA---DRQHYSCMIDMLGRAGILDKAE 574
               +L  C        G    + +K V  Y I     D    + +ID+ G  G  D + 
Sbjct: 470 MIGSILETCC-------GLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSL 522

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHG 600
            L Q+     D + W+S++  C  +G
Sbjct: 523 NLFQRVE-KKDIVSWTSMINCCTNNG 547



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 52/220 (23%), Positives = 103/220 (46%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA 72
           I ++  TC  +  +S    +  Y   N  L++   NR ID + + G  + +  LF  +  
Sbjct: 471 IGSILETCCGLKSISLLKQVHCYAIRNGLLDLILENRLIDIYGECGEFDHSLNLFQRVEK 530

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           +D+V++  +I+ C        A++L+ EM    I+  +    S+L   +     T+G Q+
Sbjct: 531 KDIVSWTSMINCCTNNGRLNGAVFLFTEMQKANIQPDSVALVSILVAIAGLSSLTKGKQV 590

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  ++   F +   + S LVD+Y   G    A+ +F+    +++  W  M+ A       
Sbjct: 591 HGFLIRRNFPIEGPVVSSLVDMYSGCGSMNYAIRVFERAKCKDVVLWTAMINATGMHGHG 650

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            + + ++ +M   G+ P+ +SF  ++  CS   L++EGK 
Sbjct: 651 KQAIDLFKRMLQTGLTPDHVSFLALLYACSHSKLVEEGKH 690


>gi|225423549|ref|XP_002274857.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial [Vitis vinifera]
          Length = 875

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 170/604 (28%), Positives = 315/604 (52%), Gaps = 5/604 (0%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A K FD MP RD+V ++ ++    +     + L ++ +M+S  ++  + T  SV   
Sbjct: 151 LDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLDMFSQMISEAVEPDSVTMLSVTEA 210

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS  G    G  +H  V+      N  + + L+ +Y ++G    A  LF+ +P R  A W
Sbjct: 211 CSELGSLRLGRSVHGYVVRREIESNASLNNSLIVMYGKLGDLYSAERLFENVPCRMTAPW 270

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+  + +     E L ++ KM+   +EPN ++   ++  C+    + EG+ +H  VI+
Sbjct: 271 TPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMVGVLCACARLGRVKEGRSVHGFVIR 330

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                   F+  AL++ Y+  G+L +  K F+ I    ++SWN+++SI+       +AL 
Sbjct: 331 RAMDPELDFLGPALMELYADTGNLRDCHKVFETIKEKTILSWNTLISIFTRNGQPEEALL 390

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF +MQ     P   S    L+          G QIHGY+ K G  + +  VQ+AL DMY
Sbjct: 391 LFVQMQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTG--NFNDFVQNALIDMY 448

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  + S+  +FE    +SL   NS++     +G   +A+ +F  M    + +D++T  
Sbjct: 449 AKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFL 508

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + ++A S       G  + +H   I  G   +  +  +L D YS+CG ++++H VF+++ 
Sbjct: 509 SVIQACSHLGYLEKG--KWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMS 566

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             ++V ++ ++ GY  +G     + +   M+  G+ P+ +TF+ +L+ C+H+G V+EG+L
Sbjct: 567 ERSIVSWSVMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKL 626

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            FNSM S +G++    H++CM+D+L RAG L+ A +++   P   +  +W +LL  CR+H
Sbjct: 627 YFNSM-SEFGVEPKHDHFACMVDLLSRAGDLNGAYQIITSLPFPANSSIWGALLNGCRIH 685

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
               I + +   L++++  D   Y+ +SN Y+E G ++   ++R    ++ L +  G+S 
Sbjct: 686 KRIDIIKSIEKNLLDVDTADTGYYTLLSNIYAEEGTWDKFGKVRSMMKSKGLRKVPGYST 745

Query: 660 IEVN 663
           IE++
Sbjct: 746 IEID 749



 Score =  218 bits (554), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 154/584 (26%), Positives = 292/584 (50%), Gaps = 12/584 (2%)

Query: 19  TCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY 78
           T T++  L + L +    +  P     +S + I+ + + G   S+K++FD  P  D   +
Sbjct: 13  TSTTLTQLHAHLFITGLHRHPP-----ASTKLIESYAQIGIFESSKRVFDTFPKPDSFMW 67

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKE-SASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
            +LI         ++A+ LY EMV     + S   F SVL  CS  G  + G ++H RV+
Sbjct: 68  GVLIKCYVWGGFFEEAVSLYHEMVYQDQTQISNFVFPSVLKACSGFGDLSVGGKVHGRVI 127

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR 197
             GF  +  + + L+ +Y  M     A   FD +P R++  W+ ++  F +  +  E L 
Sbjct: 128 KCGFESDAVVETSLLCMYGEMSCLDDACKAFDTMPIRDVVAWSSIVLNFVQNGQASEGLD 187

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           M+++M +E VEP+ ++   +   CS    L  G+ +H +V++   ++ N  + N+L+  Y
Sbjct: 188 MFSQMISEAVEPDSVTMLSVTEACSELGSLRLGRSVHGYVVRRE-IESNASLNNSLIVMY 246

Query: 258 SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
              G L  A++ F+ +P      W  ++S Y       +AL +F +MQ  +  P+  + V
Sbjct: 247 GKLGDLYSAERLFENVPCRMTAPWTPMISCYNQSGCFQEALNVFAKMQEFKMEPNQVTMV 306

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             L   +R G V  G+ +HG+V +   D     +  AL ++Y     +     VFE+   
Sbjct: 307 GVLCACARLGRVKEGRSVHGFVIRRAMDPELDFLGPALMELYADTGNLRDCHKVFETIKE 366

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           +++   N+L++    +G  ++A+ +F  M  +G+  D  +L+++L A    + + LG+  
Sbjct: 367 KTILSWNTLISIFTRNGQPEEALLLFVQMQTQGLMPDSYSLASSLSACGTISFSQLGA-- 424

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H   IK+G   N  V  +L+D Y++CG +  ++++FEKI   ++V + S++ G+S+NG
Sbjct: 425 QIHGYIIKTG-NFNDFVQNALIDMYAKCGFVHSANKMFEKIKEKSLVTWNSMICGFSQNG 483

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
              EA+ + + M    +  DK+TFL V+  C+H G +++G+ V + +  +YG+  D    
Sbjct: 484 YSVEAITLFDQMYMNCVKMDKLTFLSVIQACSHLGYLEKGKWVHHKL-IMYGLRKDSYLD 542

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           + + DM  + G L  A  +  +       + WS ++    +HG 
Sbjct: 543 TALTDMYSKCGELQMAHGVFDRM-SERSIVSWSVMIAGYGMHGQ 585



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 68/274 (24%), Positives = 139/274 (50%), Gaps = 1/274 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           M +  L+P   ++ +    C +I        +  Y       N +  N  ID + K G +
Sbjct: 395 MQTQGLMPDSYSLASSLSACGTISFSQLGAQIHGYIIKTGNFNDFVQNALIDMYAKCGFV 454

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           +SA K+F+++  + +VT+N +I G  +  +  +A+ L+D+M  + +K    TF SV+  C
Sbjct: 455 HSANKMFEKIKEKSLVTWNSMICGFSQNGYSVEAITLFDQMYMNCVKMDKLTFLSVIQAC 514

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           S+ G+  +G  +H +++  G   + Y+ + L D+Y + G    A  +FD + ER++ +W+
Sbjct: 515 SHLGYLEKGKWVHHKLIMYGLRKDSYLDTALTDMYSKCGELQMAHGVFDRMSERSIVSWS 574

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
           +M+  +    + +  + ++N+M   G++PN ++F +++  CS    ++EGK   + + + 
Sbjct: 575 VMIAGYGMHGQINATISLFNQMLGSGIKPNDITFMHILSACSHAGAVEEGKLYFNSMSEF 634

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
           G    +   A  +VD  S  G L  A +    +P
Sbjct: 635 GVEPKHDHFA-CMVDLLSRAGDLNGAYQIITSLP 667


>gi|147860004|emb|CAN81045.1| hypothetical protein VITISV_006763 [Vitis vinifera]
          Length = 1321

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 203/662 (30%), Positives = 333/662 (50%), Gaps = 25/662 (3%)

Query: 18  PTCTSIVPLSSSLLLDSYCQP-----NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA 72
           PTC S++P   ++ L     P      P     S    +  +V    LN+A  LF++ P 
Sbjct: 13  PTC-SLLPGCIAVDLQKNINPIISASGPYKGCMSKGNVVGGWVD---LNNACILFEKTPK 68

Query: 73  RDMVTYNLL-ISGCGKFRHP--KQALYLYDEMVSH-----GIKESASTFSSVLSVCSNAG 124
           R  V+      SGC        K+A +       H     G       FS+ LS C   G
Sbjct: 69  RIGVSITESHRSGCTDDPEEGVKEAGFFTRNETPHVEFGGGFPHRQYVFSA-LSFCGREG 127

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G + HC V+ +G G + ++ + L+D+Y + G    A+ ++D++   + AT N ++ 
Sbjct: 128 CVELGRRWHCFVVKIGLGSDEFVCTSLIDMYAKCGEVDSAVRVYDKMTSLDAATCNCLIS 187

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           A+       +  +++ ++   G  PN  ++  M+  C     + EGKQLH+HV+K+ ++ 
Sbjct: 188 AYARNGFFVQAFQVFMQIGNMGTRPNHYTYSTMLAVCGTISAIQEGKQLHAHVVKMQYLS 247

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
               V NAL+  YS CG + EA+  F+ +   ++ISW + ++ +  +     AL+ F  M
Sbjct: 248 -ETAVGNALLTLYSKCGMMEEAEIVFESLRQRNIISWTASINGFYQHGDFKKALKQFSMM 306

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +     P+  +F   L       +   G+  H  V K G   G V V +A+ DMY     
Sbjct: 307 RESGIEPNEFTFSIVLASCGCVKDFIDGRMFHTQVIKKGMASG-VFVGTAIIDMYSGLGE 365

Query: 365 IESSVAVFESAPGRSLE--CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
           ++ +   F+   GR+      N+L+   + +  I+ A+E F  MV E +  +E T S   
Sbjct: 366 MDEAEKQFKQM-GRAASNVSWNALIAGYVLNEKIEKAMEAFCRMVKEDVACNEFTYSNIF 424

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           KA S   S  L +   +H   IKS  ESN+ V+ SL++AY++CG +E + QVF +I   +
Sbjct: 425 KACSSFPS--LATTVQIHSRLIKSNVESNLHVASSLIEAYTQCGSLENAVQVFTQISDAD 482

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           VV + SI+  YS+NG   +A+ +L  MI+ G  P   TFL VL+ C+HSG+V+EGQ  F 
Sbjct: 483 VVSWNSIIKAYSQNGDPWKAIFLLRKMIEEGNKPTSXTFLTVLSACSHSGLVQEGQEFFK 542

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           SM   Y I  +  H SCM+D+LGRAG L+ A + +++        +W  LL +CR + N 
Sbjct: 543 SMVQDYSIQPEETHCSCMVDILGRAGQLENALDFIKKLTMKPTASIWRPLLAACRYNSNL 602

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            +   VA  +++LEP D  VY  +SN Y+E+G +  +   R     ++++++ G S IEV
Sbjct: 603 QMAEYVAEKILDLEPNDATVYVTLSNMYAEVGRWADAENQRRLMEQKEISKEPGCSWIEV 662

Query: 663 NS 664
           N+
Sbjct: 663 NN 664



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 115/457 (25%), Positives = 203/457 (44%), Gaps = 44/457 (9%)

Query: 45   YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
            Y + + +  + + G L++A+KLFD++P  ++  + +L   C +    ++AL  + EM   
Sbjct: 839  YFAAKLMSFYTECGQLSNARKLFDKIPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKE 898

Query: 105  GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            G++ +     S+L  C +      G  +H  +L   F  + YI S L+ +Y + G   +A
Sbjct: 899  GLRPNQFVLPSILKACGHLSDRRTGENMHTVILKNSFESDAYIISALIYMYSKCGHVEKA 958

Query: 165  LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-I 223
              +FD + +++L   N M+  + +     E L +  KM+  GV+PN +S+  ++ G S +
Sbjct: 959  CRVFDWIVDKDLVVMNAMVSGYAQHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQV 1018

Query: 224  GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
            G      K + S V +L         AN +                       DV+SW S
Sbjct: 1019 G-----DKSMVSEVFRL-------MTANGVEP---------------------DVVSWTS 1045

Query: 284  IVSIYADY---DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
            ++S +         FDA +       C   PS  +    L   +   N+  GK+IHGY  
Sbjct: 1046 VISGFVQNFHNHEGFDAFKEMLDQGFC---PSSVTISSLLPACTNVANLRHGKEIHGYAM 1102

Query: 341  KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
             +G +   V+V+SAL DMY KC  I  +  +F   P R+    NSL+    + G   +A+
Sbjct: 1103 VIGVEK-DVYVRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAI 1161

Query: 401  EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            E+F  M +    LD +T +  L A S +    LG   L      K   E  +     ++D
Sbjct: 1162 ELFNQMEESDTKLDHLTFTAVLNACSHAGMVELGE-SLFXKMQEKYRIEPRLEHYACMVD 1220

Query: 461  AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRN 496
               R G +  ++ + + +P  P+   + +++ G  RN
Sbjct: 1221 LLGRAGKLSEAYDLIKAMPVEPDKFVWGALL-GACRN 1256



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 71/283 (25%), Positives = 132/283 (46%), Gaps = 8/283 (2%)

Query: 31   LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR----DMVTYNLLISGCG 86
            L+    Q   + N+ S N  I  F + G  +   ++F  M A     D+V++  +ISG  
Sbjct: 992  LVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSEVFRLMTANGVEPDVVSWTSVISGFV 1051

Query: 87   KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY 146
            +  H  +    + EM+  G   S+ T SS+L  C+N      G +IH   + +G   ++Y
Sbjct: 1052 QNFHNHEGFDAFKEMLDQGFCPSSVTISSLLPACTNVANLRHGKEIHGYAMVIGVEKDVY 1111

Query: 147  IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
            + S LVD+Y + G    A  LF  +PERN  TWN ++  +      +E + ++N+M+   
Sbjct: 1112 VRSALVDMYAKCGYISEAKILFYMMPERNTVTWNSLIFGYANHGYCNEAIELFNQMEESD 1171

Query: 207  VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
             + + L+F  ++  CS   +++ G+ L   + +   ++  +     +VD     G L EA
Sbjct: 1172 TKLDHLTFTAVLNACSHAGMVELGESLFXKMQEKYRIEPRLEHYACMVDLLGRAGKLSEA 1231

Query: 267  KKSFDFIPVD-DVISWNSIVSI---YADYDLIFDALELFFRMQ 305
                  +PV+ D   W +++     + + +L   A E  F ++
Sbjct: 1232 YDLIKAMPVEPDKFVWGALLGACRNHGNIELAEVAAEHLFELE 1274



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 78/307 (25%), Positives = 153/307 (49%), Gaps = 28/307 (9%)

Query: 315  SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
            ++ + ++  +R   +Y G+ +H ++  +G    + +  + L   Y +C  + ++  +F+ 
Sbjct: 805  TYAKAIDMYARDRALYRGRALHAHLVIIGLARLT-YFAAKLMSFYTECGQLSNARKLFDK 863

Query: 375  APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
             P  ++     L  +    G  ++A+  F  M  EG+  ++  L + LKA    +    G
Sbjct: 864  IPNTNIRRWIVLTGACARRGFYEEALSAFSEMQKEGLRPNQFVLPSILKACGHLSDRRTG 923

Query: 435  SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS 494
                +H   +K+ FES+  +  +L+  YS+CGH+E + +VF+ I   ++V   ++++GY+
Sbjct: 924  EN--MHTVILKNSFESDAYIISALIYMYSKCGHVEKACRVFDWIVDKDLVVMNAMVSGYA 981

Query: 495  RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG---MVKEGQLVFNSMKSVYGID 551
            ++G   EALB+++ M Q G+ P+ V++  ++AG +  G   MV E   VF  M +  G++
Sbjct: 982  QHGFVHEALBLVQKMQQAGVKPNVVSWNTLIAGFSQVGDKSMVSE---VFRLM-TANGVE 1037

Query: 552  ADRQHYSCMI-----DMLGRAGILDKAEELLQQTPGGGDC---MMWSSLLRSCR-----V 598
             D   ++ +I     +     G  D  +E+L Q    G C   +  SSLL +C       
Sbjct: 1038 PDVVSWTSVISGFVQNFHNHEG-FDAFKEMLDQ----GFCPSSVTISSLLPACTNVANLR 1092

Query: 599  HGNEIIG 605
            HG EI G
Sbjct: 1093 HGKEIHG 1099


>gi|297804280|ref|XP_002870024.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297315860|gb|EFH46283.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 871

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 184/657 (28%), Positives = 343/657 (52%), Gaps = 10/657 (1%)

Query: 11  RTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKLFDE 69
           RT+ ++   C     L     +D++ + N   L+    ++    +   G L  A ++FD+
Sbjct: 95  RTLCSVLQLCADSKSLKDGKEVDNFIRGNGFVLDSNLGSKLALMYTNCGDLKEASRVFDQ 154

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           +     + +N+L++   K      ++ L+ +M+S G++  + TFS V    S+      G
Sbjct: 155 VKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGG 214

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            Q+H  +L  GFG    +G+ LV  Y++      A  +FDE+ ER++ +WN ++  +   
Sbjct: 215 EQLHGYILKSGFGERNSVGNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSN 274

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              ++ L ++ +M   G+E +  +   +  GC+   L+  G+ +H   +K  +   + F 
Sbjct: 275 GLAEKGLSVFVQMLFSGIEIDLATIVSVFAGCADSRLISLGRAVHCFGVKACFSREDRF- 333

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            N L+D YS CG L  AK  F  +    V+S+ S+++ YA   L  +A++LF  M+    
Sbjct: 334 CNTLLDMYSKCGDLDSAKVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGI 393

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIES 367
            P + +    LN  +R   +  GK++H ++ +  +GFD   + V +AL DMY KC  +  
Sbjct: 394 SPDVYTVTAVLNCCARNRLLDEGKRVHEWIKENDMGFD---IFVSNALMDMYAKCGSMRE 450

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM-VDEGIGLDEVTLSTTLKALS 426
           +  VF     + +   N+++     +    +A+ +F  + V++    DE T++  L A +
Sbjct: 451 AELVFSEMRVKDIISWNTVIGGYSKNCYANEALSLFNLLLVEKRFSPDERTVACVLPACA 510

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
             ++ + G  R +H   +++G+ S+  V+ SL+D Y++CG + L+  +F+ I S ++V +
Sbjct: 511 SLSAFDKG--REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLARLLFDDITSKDLVSW 568

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           T ++ GY  +G G+EA+ +   M Q G+ PD+++F+ +L  C+HSG+V EG   FN M+ 
Sbjct: 569 TVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYACSHSGLVDEGWRFFNIMRH 628

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
              I+   +HY+C++DML R G L KA   ++  P   D  +W +LL  CR+H +  +  
Sbjct: 629 ECKIEPTVEHYACIVDMLARTGNLSKAYRFIENMPIPPDATIWGALLCGCRIHHDVKLAE 688

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           RVA  + ELEP +   Y  ++N Y+E  ++E   ++R+    R L ++ G S IE+ 
Sbjct: 689 RVAEKVFELEPENTGYYVLMANIYAEAEKWEEVKRLRKRIGQRGLRKNPGCSWIEIK 745



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/422 (25%), Positives = 208/422 (49%), Gaps = 10/422 (2%)

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +R++   N  LR FCE       +++ +      ++P  L  C +++ C+    L +GK+
Sbjct: 58  DRSVTDANTQLRRFCESGNLKNAVKLLHVSGKWDIDPRTL--CSVLQLCADSKSLKDGKE 115

Query: 233 LHSHVIKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           + + +   G+V D N+   + L   Y+ CG L EA + FD + ++  + WN +++  A  
Sbjct: 116 VDNFIRGNGFVLDSNL--GSKLALMYTNCGDLKEASRVFDQVKIEKALFWNILMNELAKS 173

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
                ++ LF +M          +F       S   +V  G+Q+HGY+ K GF   +  V
Sbjct: 174 GDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSVNGGEQLHGYILKSGFGERN-SV 232

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            ++L   Y K + ++S+  VF+    R +   NS++   + +G  +  + +F  M+  GI
Sbjct: 233 GNSLVAFYLKNHRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLFSGI 292

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
            +D  T+ +     + S   +LG  R +HC  +K+ F        +L+D YS+CG ++ +
Sbjct: 293 EIDLATIVSVFAGCADSRLISLG--RAVHCFGVKACFSREDRFCNTLLDMYSKCGDLDSA 350

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             VF ++   +VV +TS++ GY+R G+  EA+ + E M + G+ PD  T   VL  C  +
Sbjct: 351 KVVFREMSGRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARN 410

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
            ++ EG+ V   +K    +  D    + ++DM  + G + +AE +  +     D + W++
Sbjct: 411 RLLDEGKRVHEWIKE-NDMGFDIFVSNALMDMYAKCGSMREAELVFSEMR-VKDIISWNT 468

Query: 592 LL 593
           ++
Sbjct: 469 VI 470



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/191 (25%), Positives = 92/191 (48%), Gaps = 13/191 (6%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGH 59
           ++  +  P  RT+  + P C S+        +  Y   N    + + +N  +D + K G 
Sbjct: 490 LVEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGA 549

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+ LFD++ ++D+V++ ++I+G G     K+A+ L+++M   GI+    +F S+L  
Sbjct: 550 LLLARLLFDDITSKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEPDEISFVSLLYA 609

Query: 120 CSNAGFYTEGIQI------HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           CS++G   EG +        C++      +  Y  + +VD+  R G   +A    + +P 
Sbjct: 610 CSHSGLVDEGWRFFNIMRHECKIEPT---VEHY--ACIVDMLARTGNLSKAYRFIENMPI 664

Query: 174 RNLAT-WNLML 183
              AT W  +L
Sbjct: 665 PPDATIWGALL 675


>gi|15220337|ref|NP_172596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|122213654|sp|Q3E6Q1.1|PPR32_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g11290
 gi|332190592|gb|AEE28713.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 809

 Score =  289 bits (739), Expect = 4e-75,   Method: Compositional matrix adjust.
 Identities = 170/626 (27%), Positives = 329/626 (52%), Gaps = 11/626 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +   + +  F + G ++ A ++F+ + ++  V Y+ ++ G  K     +AL  +  M   
Sbjct: 70  FFQTKLVSLFCRYGSVDEAARVFEPIDSKLNVLYHTMLKGFAKVSDLDKALQFFVRMRYD 129

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            ++     F+ +L VC +      G +IH  ++  GF L+L+  + L ++Y +      A
Sbjct: 130 DVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVNEA 189

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD +PER+L +WN ++  + +       L M   M  E ++P+ ++   ++   S  
Sbjct: 190 RKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSMCEENLKPSFITIVSVLPAVSAL 249

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            L+  GK++H + ++ G+ D  + ++ ALVD Y+ CGSL  A++ FD +   +V+SWNS+
Sbjct: 250 RLISVGKEIHGYAMRSGF-DSLVNISTALVDMYAKCGSLETARQLFDGMLERNVVSWNSM 308

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  Y   +   +A+ +F +M     +P+  S +  L+  +  G++  G+ IH    +LG 
Sbjct: 309 IDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELGL 368

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D  +V V ++L  MY KC  ++++ ++F     R+L   N+++     +G   DA+  F 
Sbjct: 369 DR-NVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSWNAMILGFAQNGRPIDALNYFS 427

Query: 405 FMVDEGIGLDE---VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            M    +  D    V++ T +  LS++  A     + +H   ++S  + N+ V+ +L+D 
Sbjct: 428 QMRSRTVKPDTFTYVSVITAIAELSITHHA-----KWIHGVVMRSCLDKNVFVTTALVDM 482

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG I ++  +F+ +   +V  + ++++GY  +G G+ AL++ E M +  + P+ VTF
Sbjct: 483 YAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQKGTIKPNGVTF 542

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L V++ C+HSG+V+ G   F  MK  Y I+    HY  M+D+LGRAG L++A + + Q P
Sbjct: 543 LSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHYGAMVDLLGRAGRLNEAWDFIMQMP 602

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
                 ++ ++L +C++H N     + A  L EL P D   +  ++N Y     +E   Q
Sbjct: 603 VKPAVNVYGAMLGACQIHKNVNFAEKAAERLFELNPDDGGYHVLLANIYRAASMWEKVGQ 662

Query: 642 IRETALARKLTRDIGHSLIEV-NSCH 666
           +R + L + L +  G S++E+ N  H
Sbjct: 663 VRVSMLRQGLRKTPGCSMVEIKNEVH 688



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 113/393 (28%), Positives = 192/393 (48%), Gaps = 2/393 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++++     + + K   +N A+K+FD MP RD+V++N +++G  +    + AL +   M
Sbjct: 168 LDLFAMTGLENMYAKCRQVNEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVKSM 227

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +K S  T  SVL   S     + G +IH   +  GF   + I + LVD+Y + G  
Sbjct: 228 CEENLKPSFITIVSVLPAVSALRLISVGKEIHGYAMRSGFDSLVNISTALVDMYAKCGSL 287

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LFD + ERN+ +WN M+ A+ +   P E + ++ KM  EGV+P  +S    +  C
Sbjct: 288 ETARQLFDGMLERNVVSWNSMIDAYVQNENPKEAMLIFQKMLDEGVKPTDVSVMGALHAC 347

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L+ G+ +H   ++LG +D N+ V N+L+  Y  C  +  A   F  +    ++SW
Sbjct: 348 ADLGDLERGRFIHKLSVELG-LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTLVSW 406

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A      DAL  F +M+    +P   ++V  +   +     +  K IHG V +
Sbjct: 407 NAMILGFAQNGRPIDALNYFSQMRSRTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D  +V V +AL DMY KC  I  +  +F+    R +   N+++      G  K A+E
Sbjct: 467 SCLDK-NVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALE 525

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           +F  M    I  + VT  + + A S S     G
Sbjct: 526 LFEEMQKGTIKPNGVTFLSVISACSHSGLVEAG 558



 Score = 64.7 bits (156), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 5/133 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++ +   +D + K G +  A+ +FD M  R + T+N +I G G     K AL L++EM 
Sbjct: 472 NVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGFGKAALELFEEMQ 531

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQ---IHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
              IK +  TF SV+S CS++G    G++   +     S+   ++ Y    +VDL  R G
Sbjct: 532 KGTIKPNGVTFLSVISACSHSGLVEAGLKCFYMMKENYSIELSMDHY--GAMVDLLGRAG 589

Query: 160 PSVRALDLFDELP 172
               A D   ++P
Sbjct: 590 RLNEAWDFIMQMP 602


>gi|222625199|gb|EEE59331.1| hypothetical protein OsJ_11408 [Oryza sativa Japonica Group]
          Length = 691

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 174/595 (29%), Positives = 316/595 (53%), Gaps = 12/595 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++ +N  ++ + K G L SA++LFD MP R+MV++  L+    +    + A  L+  
Sbjct: 93  RLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152

Query: 101 MV--SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +    H + +   T    L++  +A     G+  H     LG   N ++GS L+D Y   
Sbjct: 153 LRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGV--HSCAWKLGHDHNAFVGSGLIDAYSLC 210

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A  +F+ +  ++   W  M+  + E   P+   R+++KM+  G +PN  +   ++
Sbjct: 211 SLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRVFSKMRVSGCKPNPFALTSVL 270

Query: 219 RG--CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +   C   ++L  GK +H   IK    D    V  AL+D Y+ CG + +A+ +F+ IP D
Sbjct: 271 KAAVCLPSVVL--GKGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYD 327

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DVI  + ++S YA  +    A ELF R+      P+  S    L   +    + FGKQIH
Sbjct: 328 DVILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIH 387

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +  K+G +   + V +AL D Y KCN ++SS+ +F S    +    N+++     SG  
Sbjct: 388 NHAIKIGHE-SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLG 446

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++A+ +F  M    +   +VT S+ L+A + +AS  +     +HC   KS F ++  +  
Sbjct: 447 EEALSVFCEMQAAQMPCTQVTYSSVLRACASTAS--IRHAGQIHCSIEKSTFNNDTVIGN 504

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+D Y++CG+I  + +VF+ +   +++ + +I++GY+ +G   +AL++ + M +  +  
Sbjct: 505 SLIDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVES 564

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + +TF+ +L+ C+ +G+V  G  +F+SM+  +GI    +HY+C++ +LGRAG L+ A + 
Sbjct: 565 NDITFVALLSVCSSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQF 624

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +   P     M+W +LL SC +H N  +GR  A  ++E+EP D   Y  +SN Y+
Sbjct: 625 IGDIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYA 679


>gi|168048332|ref|XP_001776621.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162672066|gb|EDQ58609.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 703

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 168/572 (29%), Positives = 310/572 (54%), Gaps = 4/572 (0%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +A+ +    +  G+   +  +  VL  C          Q+H  ++      N ++ + L+
Sbjct: 11  EAIVVLMNRLQRGLITDSFMYVEVLKRCLKQKDLMAAKQVHDCIIKSRMEQNAHVMNNLL 70

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
            +Y+  G    A  +FD L +++ A+WN M+  + E    ++ +R++ +M  EGV+PN  
Sbjct: 71  HVYIECGRLQEARCVFDALVKKSGASWNAMIAGYVEHKHAEDAMRLFREMCHEGVQPNAG 130

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           ++  +++ C+    L  GK++H+  I+ G ++ ++ V  AL+  Y  CGS+ EA++ FD 
Sbjct: 131 TYMIILKACASLSALKWGKEVHA-CIRHGGLESDVRVGTALLRMYGKCGSINEARRIFDN 189

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +   D+ISW  ++  YA      +A  L  +M+    +P+  ++V  LN  +  G + + 
Sbjct: 190 LMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITYVSILNACASEGALKWV 249

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           K++H +    G +   V V +AL  MY K   I+ +  VF+    R +   N ++ +   
Sbjct: 250 KRVHRHALDAGLEL-DVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAE 308

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
            G   +A ++F  M  EG   D +   + L A + SA A L   + +H  A+ SG E ++
Sbjct: 309 HGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACA-SAGA-LEWVKKIHRHALDSGLEVDV 366

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V  +L+  YS+ G I+ +  VF+++   NVV + ++++G +++G+G++AL++   M   
Sbjct: 367 RVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAH 426

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD+VTF+ VL+ C+H+G+V EG+  + +M  VYGI+ D  H +CM+D+LGRAG L +
Sbjct: 427 GVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLME 486

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A+  +       D   W +LL SCR +GN  +G  VA   ++L+P + A Y  +SN Y+E
Sbjct: 487 AKLFIDNMAVDPDEATWGALLGSCRTYGNVELGELVAKERLKLDPKNAATYVLLSNIYAE 546

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            G++++   +R     R + ++ G S IEV++
Sbjct: 547 AGKWDMVSWVRTMMRERGIRKEPGRSWIEVDN 578



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 112/443 (25%), Positives = 225/443 (50%), Gaps = 3/443 (0%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           +++  + D   +   + N +  N  +  +++ G L  A+ +FD +  +   ++N +I+G 
Sbjct: 45  MAAKQVHDCIIKSRMEQNAHVMNNLLHVYIECGRLQEARCVFDALVKKSGASWNAMIAGY 104

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
            + +H + A+ L+ EM   G++ +A T+  +L  C++      G ++H  +   G   ++
Sbjct: 105 VEHKHAEDAMRLFREMCHEGVQPNAGTYMIILKACASLSALKWGKEVHACIRHGGLESDV 164

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
            +G+ L+ +Y + G    A  +FD L   ++ +W +M+ A+ +     E  R+  +M+ E
Sbjct: 165 RVGTALLRMYGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQE 224

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G +PN +++  ++  C+    L   K++H H +  G +++++ V  ALV  Y+  GS+ +
Sbjct: 225 GFKPNAITYVSILNACASEGALKWVKRVHRHALDAG-LELDVRVGTALVQMYAKSGSIDD 283

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+  FD + V DV+SWN ++  +A++    +A +LF +MQ    +P    F+  LN  + 
Sbjct: 284 ARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACAS 343

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G + + K+IH +    G +   V V +AL  MY K   I+ +  VF+    R++   N+
Sbjct: 344 AGALEWVKKIHRHALDSGLE-VDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNA 402

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++ L   G  +DA+E+F  M   G+  D VT    L A S +   + G  + L    + 
Sbjct: 403 MISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQV- 461

Query: 446 SGFESNIAVSCSLMDAYSRCGHI 468
            G E +++    ++D   R G +
Sbjct: 462 YGIEPDVSHCNCMVDLLGRAGRL 484



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 105/379 (27%), Positives = 197/379 (51%), Gaps = 6/379 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +N A+++FD +   D++++ ++I    +  + K+A  L  +M   G K +A T+
Sbjct: 174 YGKCGSINEARRIFDNLMNHDIISWTVMIGAYAQSGNGKEAYRLMLQMEQEGFKPNAITY 233

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            S+L+ C++ G      ++H   L  G  L++ +G+ LV +Y + G    A  +FD +  
Sbjct: 234 VSILNACASEGALKWVKRVHRHALDAGLELDVRVGTALVQMYAKSGSIDDARVVFDRMKV 293

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++ +WN+M+ AF E  R  E   ++ +M+ EG +P+ + F  ++  C+    L+  K++
Sbjct: 294 RDVVSWNVMIGAFAEHGRGHEAYDLFLQMQTEGCKPDAIMFLSILNACASAGALEWVKKI 353

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H H +  G ++V++ V  ALV  YS  GS+ +A+  FD + V +V+SWN+++S  A + L
Sbjct: 354 HRHALDSG-LEVDVRVGTALVHMYSKSGSIDDARVVFDRMKVRNVVSWNAMISGLAQHGL 412

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             DALE+F RM     +P   +FV  L+  S  G V  G+  +  +T++      V   +
Sbjct: 413 GQDALEVFRRMTAHGVKPDRVTFVAVLSACSHAGLVDEGRSQYLAMTQVYGIEPDVSHCN 472

Query: 354 ALTDMYGKC-NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
            + D+ G+   ++E+ + +   A         +L+ S    GN    VE+   +  E + 
Sbjct: 473 CMVDLLGRAGRLMEAKLFIDNMAVDPDEATWGALLGSCRTYGN----VELGELVAKERLK 528

Query: 413 LDEVTLSTTLKALSVSASA 431
           LD    +T +   ++ A A
Sbjct: 529 LDPKNAATYVLLSNIYAEA 547



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 68/246 (27%), Positives = 132/246 (53%), Gaps = 1/246 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L++      +  + KSG ++ A+ +FD M  RD+V++N++I    +     +A  L+ +
Sbjct: 262 ELDVRVGTALVQMYAKSGSIDDARVVFDRMKVRDVVSWNVMIGAFAEHGRGHEAYDLFLQ 321

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M + G K  A  F S+L+ C++AG      +IH   L  G  +++ +G+ LV +Y + G 
Sbjct: 322 MQTEGCKPDAIMFLSILNACASAGALEWVKKIHRHALDSGLEVDVRVGTALVHMYSKSGS 381

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +  RN+ +WN M+    +     + L ++ +M A GV+P+ ++F  ++  
Sbjct: 382 IDDARVVFDRMKVRNVVSWNAMISGLAQHGLGQDALEVFRRMTAHGVKPDRVTFVAVLSA 441

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVI 279
           CS   L+DEG+  +  + ++  ++ ++   N +VD     G L+EAK   D + VD D  
Sbjct: 442 CSHAGLVDEGRSQYLAMTQVYGIEPDVSHCNCMVDLLGRAGRLMEAKLFIDNMAVDPDEA 501

Query: 280 SWNSIV 285
           +W +++
Sbjct: 502 TWGALL 507


>gi|62320270|dbj|BAD94552.1| hypothetical protein [Arabidopsis thaliana]
          Length = 694

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 160/537 (29%), Positives = 298/537 (55%), Gaps = 13/537 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH R+L LG   + ++ + L+      G    A  +FD+LP   +  WN ++R +   +
Sbjct: 39  QIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDLPRPQIFPWNAIIRGYSRNN 98

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + L MY+ M+   V P+  +F ++++ CS    L  G+ +H+ V +LG+ D ++FV 
Sbjct: 99  HFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGRFVHAQVFRLGF-DADVFVQ 157

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           N L+  Y+ C  L  A+  F+ +P+ +  ++SW +IVS YA      +ALE+F  M+   
Sbjct: 158 NGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSHMRKMD 217

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P   + V  LN  +   ++  G+ IH  V K+G +     +  +L  MY KC  + ++
Sbjct: 218 VKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLE-IEPDLLISLNTMYAKCGQVATA 276

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F+     +L   N++++    +G  ++A++MF  M+++ +  D +++++     ++S
Sbjct: 277 KILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITS-----AIS 331

Query: 429 ASANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           A A +GS    R ++    +S +  ++ +S +L+D +++CG +E +  VF++    +VV 
Sbjct: 332 ACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +++++ GY  +G  REA+ +   M + G+ P+ VTFL +L  CNHSGMV+EG   FN M 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMA 451

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             + I+  +QHY+C+ID+LGRAG LD+A E+++  P      +W +LL +C+ H +  +G
Sbjct: 452 D-HKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWGALLSACKKHRHVELG 510

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
              A  L  ++P +   Y Q+SN Y+    ++   ++R     + L +D+G S +EV
Sbjct: 511 EYAAQQLFSIDPSNTGHYVQLSNLYAAARLWDRVAEVRVRMKEKGLNKDVGCSWVEV 567



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/438 (23%), Positives = 214/438 (48%), Gaps = 7/438 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G +  A+++FD++P   +  +N +I G  +  H + AL +Y  M    +   + TF  +L
Sbjct: 67  GDITFARQVFDDLPRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLL 126

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD--ELPERN 175
             CS       G  +H +V  LGF  ++++ + L+ LY +      A  +F+   LPER 
Sbjct: 127 KACSGLSHLQMGRFVHAQVFRLGFDADVFVQNGLIALYAKCRRLGSARTVFEGLPLPERT 186

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           + +W  ++ A+ +   P E L +++ M+   V+P+ ++   ++   +    L +G+ +H+
Sbjct: 187 IVSWTAIVSAYAQNGEPMEALEIFSHMRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHA 246

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            V+K+G +++   +  +L   Y+ CG +  AK  FD +   ++I WN+++S YA      
Sbjct: 247 SVVKMG-LEIEPDLLISLNTMYAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAR 305

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +A+++F  M     RP   S    ++  ++ G++   + ++ YV +  +    V + SAL
Sbjct: 306 EAIDMFHEMINKDVRPDTISITSAISACAQVGSLEQARSMYEYVGRSDY-RDDVFISSAL 364

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DM+ KC  +E +  VF+    R +   ++++      G  ++A+ ++  M   G+  ++
Sbjct: 365 IDMFAKCGSVEGARLVFDRTLDRDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPND 424

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VT    L A + S     G     +  A           +C ++D   R GH++ +++V 
Sbjct: 425 VTFLGLLMACNHSGMVREGWW-FFNLMADHKINPQQQHYAC-VIDLLGRAGHLDQAYEVI 482

Query: 476 EKIP-SPNVVCFTSIMNG 492
           + +P  P V  + ++++ 
Sbjct: 483 KCMPVQPGVTVWGALLSA 500



 Score =  109 bits (272), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 74/336 (22%), Positives = 158/336 (47%), Gaps = 4/336 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFD--EMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +++  N  I  + K   L SA+ +F+   +P R +V++  ++S   +   P +AL ++  
Sbjct: 153 DVFVQNGLIALYAKCRRLGSARTVFEGLPLPERTIVSWTAIVSAYAQNGEPMEALEIFSH 212

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +K       SVL+  +      +G  IH  V+ +G  +   +   L  +Y + G 
Sbjct: 213 MRKMDVKPDWVALVSVLNAFTCLQDLKQGRSIHASVVKMGLEIEPDLLISLNTMYAKCGQ 272

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD++   NL  WN M+  + +     E + M+++M  + V P+ +S    +  
Sbjct: 273 VATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISITSAISA 332

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L++ + ++ +V +  + D ++F+++AL+D ++ CGS+  A+  FD     DV+ 
Sbjct: 333 CAQVGSLEQARSMYEYVGRSDYRD-DVFISSALIDMFAKCGSVEGARLVFDRTLDRDVVV 391

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W++++  Y  +    +A+ L+  M+     P+  +F+  L   + +G V  G      + 
Sbjct: 392 WSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACNHSGMVREGWWFFNLMA 451

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
               +    H  + + D+ G+   ++ +  V +  P
Sbjct: 452 DHKINPQQQHY-ACVIDLLGRAGHLDQAYEVIKCMP 486



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 56/244 (22%), Positives = 119/244 (48%), Gaps = 22/244 (9%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G + +AK LFD+M + +++ +N +ISG  K  + ++A+ ++ EM++  ++    + 
Sbjct: 267 YAKCGQVATAKILFDKMKSPNLILWNAMISGYAKNGYAREAIDMFHEMINKDVRPDTISI 326

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +S +S C+  G   +   ++  V    +  +++I S L+D++ + G    A  +FD   +
Sbjct: 327 TSAISACAQVGSLEQARSMYEYVGRSDYRDDVFISSALIDMFAKCGSVEGARLVFDRTLD 386

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++  W+ M+  +    R  E + +Y  M+  GV PN ++F  ++  C+           
Sbjct: 387 RDVVVWSAMIVGYGLHGRAREAISLYRAMERGGVHPNDVTFLGLLMACN----------- 435

Query: 234 HSHVIKLGWVDVNIFVANAL----------VDFYSACGSLIEAKKSFDFIPVDD-VISWN 282
           HS +++ GW   N+   + +          +D     G L +A +    +PV   V  W 
Sbjct: 436 HSGMVREGWWFFNLMADHKINPQQQHYACVIDLLGRAGHLDQAYEVIKCMPVQPGVTVWG 495

Query: 283 SIVS 286
           +++S
Sbjct: 496 ALLS 499



 Score = 55.8 bits (133), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 75/163 (46%), Gaps = 1/163 (0%)

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           S +  A  + ++ +    + +H   +  G + +  +   L+ A S  G I  + QVF+ +
Sbjct: 20  SDSFYASLIDSATHKAQLKQIHARLLVLGLQFSGFLITKLIHASSSFGDITFARQVFDDL 79

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           P P +  + +I+ GYSRN   ++AL M   M    + PD  TF  +L  C+    ++ G+
Sbjct: 80  PRPQIFPWNAIIRGYSRNNHFQDALLMYSNMQLARVSPDSFTFPHLLKACSGLSHLQMGR 139

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
            V   +  + G DAD    + +I +  +   L  A  + +  P
Sbjct: 140 FVHAQVFRL-GFDADVFVQNGLIALYAKCRRLGSARTVFEGLP 181


>gi|297738941|emb|CBI28186.3| unnamed protein product [Vitis vinifera]
          Length = 760

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 193/635 (30%), Positives = 328/635 (51%), Gaps = 42/635 (6%)

Query: 28  SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK 87
           SS  +     PN  +N+Y          K+G  + A  +F+ +   D+V++N ++SG   
Sbjct: 106 SSGFISHVTVPNSLMNMY---------CKAGLFDRALVVFENLNNPDIVSWNTVLSG--- 153

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
           F+    AL     M   G+   A T ++VL+ CS+   +  G Q+H R+L  G    +++
Sbjct: 154 FQRSDDALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQLHSRILKCGLDCEVFV 213

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
           G+ L+ +Y R    V A                   R    L    E + ++ +M  EG+
Sbjct: 214 GNALITMYSRCCRLVEAR------------------RGNSGL----EAILVFLEMLKEGM 251

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
           + + +SF   +  C  G   + G+Q+HS  +K+G+ D ++ V N L+  YS C  + +AK
Sbjct: 252 KLDHVSFTGAISACGHGKEFELGRQIHSLAVKIGY-DTHVKVCNVLISTYSKCEDIEDAK 310

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
             F+ I   +V+SW +++SI  +     DA  LF  M+     P+  +FV  ++  +   
Sbjct: 311 LVFESIIDRNVVSWTTMISISEE-----DATSLFNEMRRDGVYPNDVTFVGLIHAITMKN 365

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
            V  G+ IHG   K  F    ++V ++L  MY K   +  S+ VFE    R +   NSL+
Sbjct: 366 LVEEGQMIHGVCVKTSF-LSELNVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLI 424

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           +    +G  ++A++ F   + E    +E T  + L +++ + + ++   +  H   +K G
Sbjct: 425 SGYAQNGLWQEALQTFLSALMESRP-NEFTFGSVLSSIASAEAISMRHGQRCHSHILKLG 483

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
             +N  VS +L+D Y++ G I  S  VF + P  N V +T+I++ ++R+G     +++ +
Sbjct: 484 LNTNPIVSSALLDMYAKRGSICESLGVFSETPLKNEVAWTAIISAHARHGDYEAVMNLFK 543

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M + G+ PD +TFL V+  C   GMV  G  +FNSM   + I+   +HYS M+DMLGRA
Sbjct: 544 DMEREGVKPDSITFLAVITACGRKGMVDTGYQLFNSMVKDHLIEPSPEHYSSMVDMLGRA 603

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G L +AEE + Q PGG    +  SLL +CR+HGN  + +RVA+ L+E+EP+    Y  +S
Sbjct: 604 GRLKEAEEFVGQIPGGAGLSVLQSLLGACRIHGNVDMAKRVADDLIEMEPMGSGSYVLMS 663

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           N Y+E GE+E   +IR+    R + ++IG S ++V
Sbjct: 664 NLYAEKGEWEKVAKIRKGMRERGVRKEIGFSWVDV 698



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 131/528 (24%), Positives = 253/528 (47%), Gaps = 46/528 (8%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +AL L+ + +  G   +    +  + + +  G    G QIH   +S GF  ++ + + L+
Sbjct: 61  EALDLFKKQLQWGFVGNIDQVTVAIVLKACCGDSKLGCQIHAFAISSGFISHVTVPNSLM 120

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           ++Y + G   RAL +F+ L   ++ +WN +L  F    R D+ L    +M   GV  + +
Sbjct: 121 NMYCKAGLFDRALVVFENLNNPDIVSWNTVLSGF---QRSDDALNFALRMNFTGVAFDAV 177

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  CS       G QLHS ++K G +D  +FV NAL+  YS C  L+EA++    
Sbjct: 178 TCTTVLAFCSDHEGFIFGFQLHSRILKCG-LDCEVFVGNALITMYSRCCRLVEARRG--- 233

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
                    NS +          +A+ +F  M     +    SF   ++          G
Sbjct: 234 ---------NSGL----------EAILVFLEMLKEGMKLDHVSFTGAISACGHGKEFELG 274

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           +QIH    K+G+D   V V + L   Y KC  IE +  VFES   R++    +++     
Sbjct: 275 RQIHSLAVKIGYD-THVKVCNVLISTYSKCEDIEDAKLVFESIIDRNVVSWTTMI----- 328

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           S + +DA  +F  M  +G+  ++VT    + A+++      G  +++H   +K+ F S +
Sbjct: 329 SISEEDATSLFNEMRRDGVYPNDVTFVGLIHAITMKNLVEEG--QMIHGVCVKTSFLSEL 386

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML--EVMI 510
            VS SL+  Y++   +  S +VFE++    ++ + S+++GY++NG+ +EAL      +M 
Sbjct: 387 NVSNSLITMYAKFESMSDSMKVFEELNYREIISWNSLISGYAQNGLWQEALQTFLSALME 446

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMV--KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
            R   P++ TF  VL+    +  +  + GQ   + +  + G++ +    S ++DM  + G
Sbjct: 447 SR---PNEFTFGSVLSSIASAEAISMRHGQRCHSHILKL-GLNTNPIVSSALLDMYAKRG 502

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
            + ++  +  +TP   + + W++++ +   HG+      V N+  ++E
Sbjct: 503 SICESLGVFSETPLKNE-VAWTAIISAHARHGDY---EAVMNLFKDME 546



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/171 (29%), Positives = 90/171 (52%), Gaps = 10/171 (5%)

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI--GLDEVTLSTTLKALSVSA 429
            + +P  ++   N  M + L      +A+++F   +  G    +D+VT++  LKA     
Sbjct: 35  LDQSPQTTIASLNRSMLTALRRNLSLEALDLFKKQLQWGFVGNIDQVTVAIVLKA--CCG 92

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            + LG C++ H  AI SGF S++ V  SLM+ Y + G  + +  VFE + +P++V + ++
Sbjct: 93  DSKLG-CQI-HAFAISSGFISHVTVPNSLMNMYCKAGLFDRALVVFENLNNPDIVSWNTV 150

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC-NHSGMVKEGQL 539
           ++G+ R+    +AL+    M   G+  D VT   VLA C +H G +   QL
Sbjct: 151 LSGFQRSD---DALNFALRMNFTGVAFDAVTCTTVLAFCSDHEGFIFGFQL 198


>gi|218186186|gb|EEC68613.1| hypothetical protein OsI_36980 [Oryza sativa Indica Group]
          Length = 981

 Score =  288 bits (738), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 174/593 (29%), Positives = 319/593 (53%), Gaps = 7/593 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q  +  +N  I  F   G +  A+KLFD M   D ++ N +IS         +   ++ +
Sbjct: 177 QNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSD 236

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M  HG++  A+T  S++SVC++A  ++ G  IH   L      ++ + + LV++Y   G 
Sbjct: 237 MRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLDSSVTVINALVNMYSAAGK 296

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LF  +  R+L +WN M+ ++ +     + L+   ++      PN L+F   +  
Sbjct: 297 LSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGA 356

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS    L +GK +H+ V++L  +  N+ V N+L+  Y  C S+ +A+K F  +P  DV+S
Sbjct: 357 CSSPGALIDGKMVHAIVLQLS-LQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVS 415

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY-FGKQIHGYV 339
           +N ++  YA  +    A+++F  ++    +P+  + +      + + +++ +G+ +H Y+
Sbjct: 416 YNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINIHGSFTSSNDLHNYGRPLHAYI 475

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + GF     +V ++L  MY KC  +ESS  +F S   +++   N+++ +    G+ ++A
Sbjct: 476 IRTGF-LSDEYVANSLITMYAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEA 534

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +++F  M   G  LD V L+  L   S ++ A+L     LH   +KSG +S+  V  + M
Sbjct: 535 LKLFIDMQHAGNKLDRVCLAECLS--SCASLASLEEGMQLHGLGMKSGLDSDSYVVNAAM 592

Query: 460 DAYSRCGHI-ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           D Y +CG + E+   V ++   P   C+ ++++GY++ G  +EA +  + M+  G  PD 
Sbjct: 593 DMYGKCGKMNEMLQMVPDQAIRPQQ-CWNTLISGYAKYGYFKEAEETFKQMVAMGRKPDY 651

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ +L+ C+H+G+V +G   +NSM S +G+    +H  C++D+LGR G   +AE  ++
Sbjct: 652 VTFVALLSACSHAGLVDKGIDYYNSMASSFGVSPGIKHCVCIVDLLGRLGRFAEAERFIE 711

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           + P   + ++W SLL S R H N  IGR+ A  L+EL+P D + Y  +SN Y+
Sbjct: 712 EMPVLPNDLIWRSLLSSSRTHKNLEIGRKAAKKLLELDPFDDSAYVLLSNLYA 764



 Score =  205 bits (521), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 148/541 (27%), Positives = 269/541 (49%), Gaps = 11/541 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y     +  +   G ++ A++LF EMP R++V++  L+       + ++ L  Y +M 
Sbjct: 78  NVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVALSSNGYLEETLRAYRQMR 137

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +A+ F++V+S+C +      G+Q+   V+  G    + + + L+ ++  +G   
Sbjct: 138 REGVPCNANAFATVVSLCGSLENEVPGLQVASHVIVSGLQNQVSVANSLITMFGNLGRVQ 197

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD + E +  + N M+  +       +   +++ M+  G+ P+  + C ++  C+
Sbjct: 198 DAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSDMRHHGLRPDATTLCSLMSVCA 257

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  G  +HS  ++   +D ++ V NALV+ YSA G L +A+  F  +   D+ISWN
Sbjct: 258 SADHFSHGSGIHSLCLRSS-LDSSVTVINALVNMYSAAGKLSDAEFLFWNMSRRDLISWN 316

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++S Y       DAL+   ++    + P+  +F   L   S  G +  GK +H  V +L
Sbjct: 317 TMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALGACSSPGALIDGKMVHAIVLQL 376

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
                ++ V ++L  MYGKCN +E +  VF+S P   +   N L+       +   A+++
Sbjct: 377 SLQR-NLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDVVSYNVLIGGYAVLEDGTKAMQV 435

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           F ++   GI  + +T+     + + S    N G  R LH   I++GF S+  V+ SL+  
Sbjct: 436 FSWIRSAGIKPNYITMINIHGSFTSSNDLHNYG--RPLHAYIIRTGFLSDEYVANSLITM 493

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG++E S  +F  I + N+V + +I+   ++ G G EAL +   M   G   D+V  
Sbjct: 494 YAKCGNLESSTNIFNSITNKNIVSWNAIIAANAQLGHGEEALKLFIDMQHAGNKLDRVCL 553

Query: 522 LCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
              L+ C     ++EG QL    MKS  G+D+D    +  +DM G+ G   K  E+LQ  
Sbjct: 554 AECLSSCASLASLEEGMQLHGLGMKS--GLDSDSYVVNAAMDMYGKCG---KMNEMLQMV 608

Query: 581 P 581
           P
Sbjct: 609 P 609



 Score =  170 bits (430), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 126/461 (27%), Positives = 220/461 (47%), Gaps = 13/461 (2%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           MP R   T+   +SGC +      A  L   M   G+  S    +S+++ C   G   EG
Sbjct: 1   MPDRTPSTWYTAVSGCVRCGRDVAAFELLRGMRERGVPLSGFALASLVTACERRG-RDEG 59

Query: 130 IQ----IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
           I     IH      G   N+YIG+ L+ LY   G    A  LF E+PERN+ +W  ++ A
Sbjct: 60  IACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGIVSDARRLFWEMPERNVVSWTALMVA 119

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWV 243
                  +E LR Y +M+ EGV  N  +F  +V  C  G L +E  G Q+ SHVI  G +
Sbjct: 120 LSSNGYLEETLRAYRQMRREGVPCNANAFATVVSLC--GSLENEVPGLQVASHVIVSG-L 176

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
              + VAN+L+  +   G + +A+K FD +   D IS N+++S+Y+   +      +F  
Sbjct: 177 QNQVSVANSLITMFGNLGRVQDAEKLFDRMEEHDTISRNAMISMYSHQGICSKCFLVFSD 236

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M+    RP   +    ++  +   +   G  IH    +   D  SV V +AL +MY    
Sbjct: 237 MRHHGLRPDATTLCSLMSVCASADHFSHGSGIHSLCLRSSLD-SSVTVINALVNMYSAAG 295

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +  +  +F +   R L   N++++S + + N  DA++  G +       + +T S+ L 
Sbjct: 296 KLSDAEFLFWNMSRRDLISWNTMISSYVQNCNSTDALKTLGQLFHTNEIPNHLTFSSALG 355

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A   S+   L   +++H   ++   + N+ V  SL+  Y +C  +E + +VF+ +P+ +V
Sbjct: 356 A--CSSPGALIDGKMVHAIVLQLSLQRNLLVGNSLITMYGKCNSMEDAEKVFQSMPTHDV 413

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           V +  ++ GY+    G +A+ +   +   G+ P+ +T + +
Sbjct: 414 VSYNVLIGGYAVLEDGTKAMQVFSWIRSAGIKPNYITMINI 454


>gi|225438593|ref|XP_002276456.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial [Vitis vinifera]
 gi|296082485|emb|CBI21490.3| unnamed protein product [Vitis vinifera]
          Length = 637

 Score =  288 bits (737), Expect = 7e-75,   Method: Compositional matrix adjust.
 Identities = 171/576 (29%), Positives = 306/576 (53%), Gaps = 6/576 (1%)

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
           +  +AL L+ +M  +G++ +  TF SV   CS          +H  V+   F  +L++ +
Sbjct: 34  YAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQT 93

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
            +VD+Y++      A +LF  +P+R++A+WN M+  F +L   D V+ ++ +M  EG+  
Sbjct: 94  SVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRA 153

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           + ++   +         L   + +HS  IK+G +D ++ V+N  +  Y+ CG    A+  
Sbjct: 154 DSVTVIGLTHSALSLKDLKMLESIHSFGIKIG-IDTDVSVSNTWIAAYAKCGEFGLAETV 212

Query: 270 FDFIP--VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
           FD I   +   +SWNS+++ YA ++    A+  F +M     R  + + +  L+   +  
Sbjct: 213 FDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPE 272

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
            ++ GK IH +  ++G D   + V + L  MY KC  I S+  +F++  G++     +++
Sbjct: 273 VLFHGKLIHAHGIQVGCD-SDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMI 331

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
                 G++ +A+ +F  M   G   D VT+ + +     + +  LG  + +   A  +G
Sbjct: 332 AGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELG--KWIDTYATANG 389

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            + N+ V  +L+D Y++CG ++ + ++F  +P  ++V +T+++ G + NG  +EAL +  
Sbjct: 390 LKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFF 449

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M++ GL P+ +TFL VL  CNH+G +++G   FN M  VY I+    HYSCM D+LGR 
Sbjct: 450 QMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRK 509

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G L +A E +Q  P   D  +WS LL +C++H N +IG  VA  L ELEP     Y Q++
Sbjct: 510 GRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMA 569

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           N Y+  G+++    IR      K  +  G SL++VN
Sbjct: 570 NIYASAGKWDRVAAIRTMMKCNKAMKSPGKSLVQVN 605



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 102/427 (23%), Positives = 203/427 (47%), Gaps = 5/427 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M    L P   T  ++A  C+ ++ L  S ++ ++  +   Q +++     +D +VK   
Sbjct: 45  MKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQ 104

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A  LF  MP RD+ ++N +I G  +     + + L+ EM   GI+  + T   +   
Sbjct: 105 LGFAYNLFSRMPKRDVASWNSMILGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHS 164

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLA 177
             +         IH   + +G   ++ + +  +  Y + G    A  +FD + +  +   
Sbjct: 165 ALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGV 224

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN M+  +    +  + +  + KM   G   +  +   ++  C    +L  GK +H+H 
Sbjct: 225 SWNSMIAGYAHFEQCSKAVGFFKKMLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHG 284

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           I++G  D +I V N L+  YS CG +  A+  FD +     +SW ++++ YA+   + +A
Sbjct: 285 IQVG-CDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEA 343

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           + LF  M+   ++P + + +  ++   +TG +  GK I  Y T  G    ++ V +AL D
Sbjct: 344 MTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKD-NLMVCNALID 402

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           +Y KC  ++++  +F + P +SL    +L+     +G  K+A+ +F  MV+ G+  + +T
Sbjct: 403 VYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHIT 462

Query: 418 LSTTLKA 424
               L+A
Sbjct: 463 FLAVLQA 469



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 113/447 (25%), Positives = 206/447 (46%), Gaps = 10/447 (2%)

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
            +A WN  +          + L ++ +MK  G+EPN L+F  + + CS  + L   + +H
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           +HV+K      ++FV  ++VD Y  C  L  A   F  +P  DV SWNS++  +A    +
Sbjct: 78  THVVK-SRFQADLFVQTSVVDMYVKCSQLGFAYNLFSRMPKRDVASWNSMILGFAQLGFV 136

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
              + LF  M +   R    + +   + A    ++   + IH +  K+G D   V V + 
Sbjct: 137 DRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDT-DVSVSNT 195

Query: 355 LTDMYGKCNVIESSVAVFESAPG--RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
               Y KC     +  VF+      ++    NS++    H      AV  F  M+  G  
Sbjct: 196 WIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKKMLCGGFR 255

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D  T+ + L +         G  +L+H   I+ G +S+I V  +L+  YS+CG I  + 
Sbjct: 256 ADLSTILSLLSSCVQPEVLFHG--KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSAR 313

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            +F+ +     V +T+++ GY+  G   EA+ +   M   G  PD VT + +++GC  +G
Sbjct: 314 YLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTG 373

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            ++ G+ + ++  +  G+  +    + +ID+  + G +D A EL    P     + W++L
Sbjct: 374 ALELGKWI-DTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTL 431

Query: 593 LRSCRVHG--NEIIGRRVANILMELEP 617
           +  C ++G   E +G     + + L+P
Sbjct: 432 IAGCALNGEFKEALGLFFQMVELGLKP 458



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 164/341 (48%), Gaps = 13/341 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++  SN  I  + K G    A+ +FD +    +  V++N +I+G   F    +A+  + +
Sbjct: 189 DVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTGVSWNSMIAGYAHFEQCSKAVGFFKK 248

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  G +   ST  S+LS C        G  IH   + +G   ++ + + L+ +Y + G 
Sbjct: 249 MLCGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGD 308

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD +  +   +W  M+  + E    DE + +++ M+A G +P+ ++   ++ G
Sbjct: 309 IGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSG 368

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C     L+ GK + ++    G  D N+ V NAL+D Y+ CGS+  A++ F  +P   ++S
Sbjct: 369 CGQTGALELGKWIDTYATANGLKD-NLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVS 427

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W ++++  A      +AL LFF+M     +P+  +F+  L   +  G +  G +    +T
Sbjct: 428 WTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMT 487

Query: 341 KL-----GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           K+     G DH      S + D+ G+   ++ +    ++ P
Sbjct: 488 KVYKINPGLDH-----YSCMADLLGRKGRLKEAFEFIQNMP 523



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 17/248 (6%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + K G + SA+ LFD M  +  V++  +I+G  +     +A+ L+  M + G K
Sbjct: 297 NTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGYAEKGDLDEAMTLFSAMEAVGEK 356

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               T  S++S C   G    G  I     + G   NL + + L+D+Y + G    A +L
Sbjct: 357 PDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNAREL 416

Query: 168 FDELPERNLATWNLMLRAFCELSRP-DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           F  +PE++L +W  ++ A C L+    E L ++ +M   G++PN ++F  +++ C+    
Sbjct: 417 FYTMPEKSLVSWTTLI-AGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGF 475

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI----EAKKSFDFI---PVD-DV 278
           L++G +  + + K       ++  N  +D YS    L+      K++F+FI   P   DV
Sbjct: 476 LEKGWECFNLMTK-------VYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDV 528

Query: 279 ISWNSIVS 286
             W+ ++S
Sbjct: 529 GIWSVLLS 536


>gi|357118484|ref|XP_003560984.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Brachypodium distachyon]
          Length = 678

 Score =  288 bits (736), Expect = 9e-75,   Method: Compositional matrix adjust.
 Identities = 182/664 (27%), Positives = 321/664 (48%), Gaps = 25/664 (3%)

Query: 3   STKLLPRVRT------ITTLAPTCT---SIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDD 53
           S   LPR  +      +  L P CT   S+  L + LL     +      + +  + +  
Sbjct: 15  SVDHLPRASSPDANPLLHRLLPACTTLPSLRALHARLLAHGLLR-----GLRAHTKLLSC 69

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH--GIKESAS 111
           +   G L SA+++ DE P  D  TY + +          +A+ ++ +M       +E   
Sbjct: 70  YAALGDLASARRVLDETPHPDAYTYKVALGWHAAAGRHAEAVAVHRDMRRRCPAEQEDVV 129

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
             S  L     +  +  G ++HC V+  G G +L++ + LVD+Y + G    A  +FD +
Sbjct: 130 VLSLALKAAVRSADFGYGRRLHCDVVKAGGG-DLFVMNNLVDMYAKGGDLKNARKVFDRI 188

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           P+RN+ +W  ML    +     E L ++N+M+ E + P+  +   ++  C++   L +G+
Sbjct: 189 PDRNVVSWTSMLSGCLQNGLAKEGLVLFNEMRQESILPSEYTMASVLMACTMLGSLHQGR 248

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +H  V+K G V  N F+  A++D Y  CG   +A++ FD +   D++ W +++  Y   
Sbjct: 249 LIHGSVMKHGLVS-NHFITAAMLDMYVKCGEAEDARQVFDELSFVDLVLWTTMIVGYTQN 307

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               DAL LF   +  R  P+  +    L+ +++  N+  G+ IHG   KLG     V V
Sbjct: 308 GSPLDALLLFVDDKFMRIVPNSVTIATVLSASAQLRNLSLGRSIHGISVKLGAVENDV-V 366

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +AL DMY KC  +  +  +F     + +   NSL+     +    DA+ +F  M  +G 
Sbjct: 367 MNALVDMYAKCKALSDAKGIFGRVLNKDVVTWNSLIAGYAENDMGSDALMLFSHMRVQGS 426

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D +++   L A        +G C   H  A+K  F SNI V+ +L++ Y++C  +  +
Sbjct: 427 LPDAISVVNALSACVCLGDLLIGKC--FHTYAVKHAFMSNIYVNTALLNLYNKCADLPSA 484

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            +VF ++   N V + +++ GY   G    ++D+   M++  + P++  F  +L+ C+H+
Sbjct: 485 QRVFSEMNDRNTVTWGAMIGGYGMQGDSAGSIDLFNEMLKDNIQPNEAVFTSILSTCSHT 544

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           GMV  G+  F SM   + I    +HY+CM+D+L RAG L++A E +Q+ P   D  +W +
Sbjct: 545 GMVTVGKKCFESMAHYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMQADTSIWQA 604

Query: 592 LLRSCRVHGNEIIGRRVANILMELEP--VDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            L  C++H          N +M L P   DF V   +SN Y+  G ++ S+ IR+    R
Sbjct: 605 FLHGCKLHSRLEFAEEAVNRMMVLHPDTPDFCV--MMSNLYTSYGRWDKSLAIRKLMKER 662

Query: 650 KLTR 653
            L +
Sbjct: 663 GLVK 666


>gi|242076522|ref|XP_002448197.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
 gi|241939380|gb|EES12525.1| hypothetical protein SORBIDRAFT_06g022800 [Sorghum bicolor]
          Length = 766

 Score =  288 bits (736), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 180/627 (28%), Positives = 325/627 (51%), Gaps = 13/627 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N   SN  I  + + G  +SA+ +FD M  R+ V++  +I+   +      A+ L+  M+
Sbjct: 81  NTILSNHLITMYGRCGAPDSARVVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 140

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G         S +  CS  G    G Q+H + +    G +L + + LV +Y + G   
Sbjct: 141 RSGTMPDQFALGSAICACSELGDLGLGRQVHAQAIKWESGSDLIVQNALVTMYSKSGSVG 200

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGC 221
               LF+ + +++L +W  ++    +  R  + L+++ +M AEGV  PN   F  + R C
Sbjct: 201 DGFALFERIRDKDLISWGSIIAGLAQQGREMDALQIFREMIAEGVHHPNEFHFGSVFRAC 260

Query: 222 SIGM-LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           S+ +  L+ G+Q+H   +K   +D N +   +L D Y+ C  L  A+K F  I   D++S
Sbjct: 261 SVVVNSLEYGEQIHGVSVKYQ-LDRNSYAGCSLSDMYARCNELDSARKVFYRIESPDLVS 319

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WNS+++ ++   L+ +A+ LF  M+    RP   + +  L        ++ G+ IH Y+ 
Sbjct: 320 WNSLINAFSAKGLLSEAMVLFSEMRDSGLRPDGITVMALLCACVGYDALHQGRSIHSYLV 379

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLG   G V V ++L  MY +C    S++ VF     R +   NS++T+ +   +++D  
Sbjct: 380 KLGLG-GDVIVSNSLLSMYARCLDFSSAMDVFHETHDRDVVTWNSILTACVQHQHLEDVF 438

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNIAVSCS 457
           ++F  +      LD ++L+  L     SASA LG     + +H  A K G   +  +S  
Sbjct: 439 KLFSLLHRSMPSLDRISLNNVL-----SASAELGYFEMVKQVHAYAFKVGLVGDAMLSNG 493

Query: 458 LMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           L+D Y++CG ++ ++++FE + +  +V  ++S++ GY++ G  +EALD+   M   G+ P
Sbjct: 494 LIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKP 553

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + VTF+ VL  C+  G+V EG   ++ MK  YGI   R+H SC++D+L RAG L +A + 
Sbjct: 554 NHVTFVGVLTACSRVGLVDEGCYYYSIMKPEYGIVPTREHCSCVLDLLARAGRLSEAAKF 613

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           + Q P   D +MW +LL + R H +  +G+R A  ++ ++P   A Y  + N Y+  G +
Sbjct: 614 VDQMPFEPDIIMWKTLLAASRTHNDVDMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNW 673

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
               ++++   +  + +  G S I++ 
Sbjct: 674 NEFARLKKDMRSSGVQKSPGKSWIKLK 700


>gi|77554180|gb|ABA96976.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 780

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 178/624 (28%), Positives = 324/624 (51%), Gaps = 16/624 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC---GKFRHPKQALYLYD 99
           ++++ N  +  +   G    A+++FDEMP RD+V++N L+S     G F   ++AL    
Sbjct: 153 DVFTGNTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALV--- 209

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M+  G   + ++  SV+  C        G+ IH   + +G    + + + LVD+Y + G
Sbjct: 210 SMMRSGFPLNVASLVSVVPACGTEQEEKFGLSIHALAVKVGLNTMVNLANALVDMYGKFG 269

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               ++ +FD + E+N  +WN  +  F       +VLRM+ KM    V P  ++   ++ 
Sbjct: 270 DVEASMQVFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLP 329

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                   D G+++H + IK   +D++IFVAN+LVD Y+  GSL +A   F+ +   +V+
Sbjct: 330 ALVELGSFDLGREVHGYSIKRA-MDLDIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVV 388

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN++++         +A  L   MQ   + P+  + V  L   +R  ++  GKQIH + 
Sbjct: 389 SWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMGKQIHAWS 448

Query: 340 TKLG--FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            + G  FD   + + +AL DMY KC  +  +  +FE +    +   N+L+     S    
Sbjct: 449 IRRGLMFD---LFISNALIDMYSKCGQLSLARNIFERSEKDDVSY-NTLILGYSQSPWCF 504

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +++ +F  M   GI  D V+    L A +  +    G  + +HC  ++     +  +S S
Sbjct: 505 ESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHG--KEIHCVLVRRLLSGHPFLSNS 562

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++ G +  + ++F KI   +V  + +++ GY  +G    A ++ E+M   GL  D
Sbjct: 563 LLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFELFELMKGDGLDYD 622

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            V+++ VLA C+H G+V +G+  F+ M +   I+  + HY+CM+D+LGRAG L K  E++
Sbjct: 623 HVSYIAVLAACSHGGLVDKGKKYFSQMVA-QNIEPQQMHYACMVDLLGRAGQLSKCAEII 681

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           +  P   +  +W +LL +CR+HGN  + +  A  L EL+P     Y+ + N Y+E G + 
Sbjct: 682 RDMPFPANSDVWGALLGACRIHGNIELAQWAAEHLFELKPEHSGYYTLMINMYAETGRWN 741

Query: 638 VSMQIRETALARKLTRDIGHSLIE 661
            + +IR+   +RK+ ++  +S ++
Sbjct: 742 EANKIRKLMKSRKVQKNPAYSWVQ 765



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/540 (25%), Positives = 254/540 (47%), Gaps = 15/540 (2%)

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE--GIQIHCRVLSLGFGLNLYIG 148
           P +AL +Y+ M+   ++    TF   L   + A    E  G+++H   L  G   +++ G
Sbjct: 98  PSEALRVYNLMLRSAVRPDDRTFPFALHAAAAAVASAEDKGLELHASALRRGHLADVFTG 157

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + LV  Y   G +  A  +FDE+PER++ +WN ++ AF       +  R    M   G  
Sbjct: 158 NTLVAFYAACGKACDARRVFDEMPERDVVSWNSLVSAFLVNGMFHDARRALVSMMRSGFP 217

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            N  S   +V  C        G  +H+  +K+G ++  + +ANALVD Y   G +  + +
Sbjct: 218 LNVASLVSVVPACGTEQEEKFGLSIHALAVKVG-LNTMVNLANALVDMYGKFGDVEASMQ 276

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +   + +SWNS +  + +     D L +F +M      P   +    L      G+
Sbjct: 277 VFDGMLEQNEVSWNSAIGCFLNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGS 336

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
              G+++HGY  K   D   + V ++L DMY K   +E +  +FE    R++   N+++ 
Sbjct: 337 FDLGREVHGYSIKRAMDL-DIFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIA 395

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
           +L+ +G   +A  +   M   G   + +TL   L A +  AS  +G  + +H  +I+ G 
Sbjct: 396 NLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPACARMASLKMG--KQIHAWSIRRGL 453

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             ++ +S +L+D YS+CG + L+  +FE+    + V + +++ GYS++    E+L + + 
Sbjct: 454 MFDLFISNALIDMYSKCGQLSLARNIFERSEKDD-VSYNTLILGYSQSPWCFESLLLFKQ 512

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS-CMIDMLGRA 567
           M   G+  D V+F+  L+ C +  + K G+ +   +  V  + +     S  ++D+  + 
Sbjct: 513 MRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVL--VRRLLSGHPFLSNSLLDLYTKG 570

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G+L  A ++  +     D   W++++    +HG   I    A  L EL   D   Y  VS
Sbjct: 571 GMLVTASKIFNKIT-KKDVASWNTMILGYGMHGQIDI----AFELFELMKGDGLDYDHVS 625



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 177/377 (46%), Gaps = 4/377 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M    ++P   T+++L P    +        +  Y  +    L+I+ +N  +D + K G 
Sbjct: 312 MSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGS 371

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A  +F++M  R++V++N +I+   +     +A  L  +M   G   ++ T  +VL  
Sbjct: 372 LEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPA 431

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+       G QIH   +  G   +L+I + L+D+Y + G    A ++F E  E++  ++
Sbjct: 432 CARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSY 490

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  + +     E L ++ +M++ G++ + +SF   +  C+   +   GK++H  +++
Sbjct: 491 NTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVR 550

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              +  + F++N+L+D Y+  G L+ A K F+ I   DV SWN+++  Y  +  I  A E
Sbjct: 551 -RLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFE 609

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  M+         S++  L   S  G V  GK+    +     +   +H  + + D+ 
Sbjct: 610 LFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHY-ACMVDLL 668

Query: 360 GKCNVIESSVAVFESAP 376
           G+   +     +    P
Sbjct: 669 GRAGQLSKCAEIIRDMP 685



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/305 (25%), Positives = 149/305 (48%), Gaps = 11/305 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  + P C  +  L     + ++  +     +++ SN  ID + K G L+ A+ +
Sbjct: 420 PNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNI 479

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F E   +D V+YN LI G  +     ++L L+ +M S GI   A +F   LS C+N   +
Sbjct: 480 F-ERSEKDDVSYNTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVF 538

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G +IHC ++      + ++ + L+DLY + G  V A  +F+++ ++++A+WN M+  +
Sbjct: 539 KHGKEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGY 598

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
               + D    ++  MK +G++ + +S+  ++  CS G L+D+GK+  S ++        
Sbjct: 599 GMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQ 658

Query: 247 IFVANALVDFYSACGSL---IEAKKSFDFIPVDDVISWNSIVS---IYADYDLIFDALEL 300
           +  A  +VD     G L    E  +   F    DV  W +++    I+ + +L   A E 
Sbjct: 659 MHYA-CMVDLLGRAGQLSKCAEIIRDMPFPANSDV--WGALLGACRIHGNIELAQWAAEH 715

Query: 301 FFRMQ 305
            F ++
Sbjct: 716 LFELK 720


>gi|302814190|ref|XP_002988779.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
 gi|300143350|gb|EFJ10041.1| hypothetical protein SELMODRAFT_128847 [Selaginella moellendorffii]
          Length = 796

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 177/625 (28%), Positives = 337/625 (53%), Gaps = 17/625 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  N  +  + K G + SA+  FD +  ++  ++  +++   +  H + AL LY  M 
Sbjct: 57  NVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLTAYAQNGHYRAALDLYKRM- 115

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPS 161
              ++ +   +++VL  C++     EG  IH R+  + G  L++ + + L+ +Y + G  
Sbjct: 116 --DLQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSL 173

Query: 162 VRALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
             A  LF+ +   R++++WN M+ A+ +    +E +R+Y  M    VEP+  +F  ++  
Sbjct: 174 EDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDMD---VEPSVRTFTSVLSA 230

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS   LLD+G+++H+ +   G  ++++ + NAL+  Y+ C  L +A K F  +P  DV+S
Sbjct: 231 CSNLGLLDQGRKIHALISSRG-TELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVS 289

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W+++++ +A+ DL  +A+E + +MQL   RP+  +F   L   +  G++  G+ +H  + 
Sbjct: 290 WSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQIL 349

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
             G+    V+  +AL D+Y     ++ + ++F+    R       L+      G+    +
Sbjct: 350 GNGYKITLVN-GTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVL 408

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNIAVSCS 457
           E++  M +      +V  +  + +  +SA A+LG+    R  H      G  S+  ++ S
Sbjct: 409 ELYREMKN----TTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFVLATS 464

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L++ YSR G++E + QVF+K+ S + + +T+++ GY+++G    AL + + M   G  P 
Sbjct: 465 LVNMYSRWGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPS 524

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           ++TF+ VL  C+H+G+ ++G+ +F S++S Y +  +  HYSC+ID+L RAG L  AEEL+
Sbjct: 525 ELTFMVVLYACSHAGLQEQGKQLFISIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELI 584

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
              P   + + WSSLL + R+H +       A  + +L+PVD A Y  +SN ++  G   
Sbjct: 585 NAMPVEPNDVTWSSLLGASRIHKDVKRATHAAGQITKLDPVDPASYVLLSNVHAVTGNLA 644

Query: 638 VSMQIRETALARKLTRDIGHSLIEV 662
               +R T +AR + +  G S IEV
Sbjct: 645 GMASVRNTMVARGVKKRRGSSWIEV 669



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 139/497 (27%), Positives = 234/497 (47%), Gaps = 16/497 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP--QLNIYSSNRTIDDFVKSGHLNSA 63
           L P     TT+   C SI  L     + S        +L++   N  +  + K G L  A
Sbjct: 117 LQPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLKLDVILENSLLTMYAKCGSLEDA 176

Query: 64  KKLFDEMPARDMV-TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           K+LF+ M  R  V ++N +I+   +  H ++A+ LY++M    ++ S  TF+SVLS CSN
Sbjct: 177 KRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYEDM---DVEPSVRTFTSVLSACSN 233

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
            G   +G +IH  + S G  L+L + + L+ +Y R      A  +F  LP R++ +W+ M
Sbjct: 234 LGLLDQGRKIHALISSRGTELDLSLQNALLTMYARCKCLDDAAKIFQRLPRRDVVSWSAM 293

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           + AF E    DE +  Y+KM+ EGV PN  +F  ++  C+    L  G+ +H  ++  G+
Sbjct: 294 IAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFASVLLACASVGDLRAGRAVHDQILGNGY 353

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
             + +    ALVD Y++ GSL EA+  FD I   D   W  ++  Y+        LEL+ 
Sbjct: 354 -KITLVNGTALVDLYTSYGSLDEARSLFDQIENRDEGLWTVLIGGYSKQGHRTGVLELYR 412

Query: 303 RMQLCRKRPSIRSFVE-FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
            M+   K P+ +      ++  +  G     +Q H  +   G     V + ++L +MY +
Sbjct: 413 EMKNTTKVPATKIIYSCVISACASLGAFADARQAHSDIEADGMISDFV-LATSLVNMYSR 471

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
              +ES+  VF+    R      +L+      G    A+ ++  M  EG    E+T    
Sbjct: 472 WGNLESARQVFDKMSSRDTLAWTTLIAGYAKHGEHGLALGLYKEMELEGAEPSELTFMVV 531

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGF--ESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           L A S +     G    +   +I+S +    NIA    ++D  SR G +  + ++   +P
Sbjct: 532 LYACSHAGLQEQGKQLFI---SIQSDYAMHPNIAHYSCIIDLLSRAGRLSDAEELINAMP 588

Query: 480 -SPNVVCFTSIMNGYSR 495
             PN V ++S++ G SR
Sbjct: 589 VEPNDVTWSSLL-GASR 604



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 93/371 (25%), Positives = 180/371 (48%), Gaps = 19/371 (5%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L+  +Q+H  +   G    N+F+ N +V  Y  CGS+  A+ +FD I   +  SW S+++
Sbjct: 40  LESVRQIHDRIS--GAASANVFLGNEIVRAYGKCGSVASARVAFDAIARKNDYSWGSMLT 97

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA       AL+L+ RM L   +P+   +   L   +    +  GK IH  ++      
Sbjct: 98  AYAQNGHYRAALDLYKRMDL---QPNPVVYTTVLGACASIEALEEGKAIHSRISGTKGLK 154

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGF 405
             V ++++L  MY KC  +E +  +FE   G RS+   N+++ +   SG+ ++A+ ++  
Sbjct: 155 LDVILENSLLTMYAKCGSLEDAKRLFERMSGRRSVSSWNAMIAAYAQSGHFEEAIRLYED 214

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           M        +V  S       +SA +NLG     R +H      G E ++++  +L+  Y
Sbjct: 215 M--------DVEPSVRTFTSVLSACSNLGLLDQGRKIHALISSRGTELDLSLQNALLTMY 266

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           +RC  ++ + ++F+++P  +VV +++++  ++   +  EA++    M   G+ P+  TF 
Sbjct: 267 ARCKCLDDAAKIFQRLPRRDVVSWSAMIAAFAETDLFDEAIEFYSKMQLEGVRPNYYTFA 326

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  C   G ++ G+ V + +    G      + + ++D+    G LD+A  L  Q   
Sbjct: 327 SVLLACASVGDLRAGRAVHDQILG-NGYKITLVNGTALVDLYTSYGSLDEARSLFDQIE- 384

Query: 583 GGDCMMWSSLL 593
             D  +W+ L+
Sbjct: 385 NRDEGLWTVLI 395


>gi|242055643|ref|XP_002456967.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
 gi|241928942|gb|EES02087.1| hypothetical protein SORBIDRAFT_03g046490 [Sorghum bicolor]
          Length = 785

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 181/613 (29%), Positives = 323/613 (52%), Gaps = 17/613 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESASTFSSVLSVCS 121
           A +L DEMP R+ V+YNLLIS   +   P +AL  +    +  G++    T+++ L+ CS
Sbjct: 55  AARLIDEMPRRNAVSYNLLISSYSRAGLPGRALETFARARAAAGLRVDRFTYAAALAACS 114

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
            A     G  +H   +  G G  +++ + L  +Y   G    A  +FD   E +  +WN 
Sbjct: 115 RALDLRTGKAVHAMTVLDGLGNGVFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNS 174

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL----HSHV 237
           +L  +      +E L++++ M   G+  N  +   +++ C+ G   D G+ +    H  V
Sbjct: 175 LLSGYVRAGAREETLKVFSLMCHHGLGWNSFALGSIIKCCASGS--DVGRHIAEAVHGCV 232

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY------ADY 291
           +K G +D ++F+A+A++D Y+  G+L  A   F  +P  +VI +N++++ +         
Sbjct: 233 VKAG-LDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGK 291

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           ++  +AL L+  MQ    +PS  +F   L   +  G   FGKQIHG V K  F H   ++
Sbjct: 292 EVSREALSLYSEMQSRGMQPSEFTFSSILRACNLAGEFGFGKQIHGQVLKHSF-HDDDYI 350

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            SAL D+Y     +E     F S P + +    S+++  + +   + A+ +F   +  G+
Sbjct: 351 GSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICYGL 410

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D  T+S+ + A +  A A  G    + C AIK GF    A+  S +   +R G ++  
Sbjct: 411 KPDLFTMSSVMNACASLAVARTG--EQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAV 468

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            + F+++ S +VV ++++++ ++++G  R+AL +   M+   + P++VTFL VL  C+H 
Sbjct: 469 TRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHG 528

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V +G   +  MK+ YG+    +H +C++D+LGRAG L  AE  ++ +    D ++W S
Sbjct: 529 GLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRS 588

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL SCR+HG+   G+ VA+ +M+LEP   A Y  + N Y + GE  ++ + R+    R +
Sbjct: 589 LLASCRIHGDMERGQLVADQIMDLEPTSSASYVILYNMYLDAGELSLASKTRDLMKERGV 648

Query: 652 TRDIGHSLIEVNS 664
            ++ G S IE+ S
Sbjct: 649 KKEPGLSWIELRS 661



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/494 (24%), Positives = 233/494 (47%), Gaps = 19/494 (3%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMG--PSVRALDLFDELPERNLATWNLMLRAFCEL 189
           +H  +       +L++ + L+  Y R+G    + A  L DE+P RN  ++NL++ ++   
Sbjct: 21  VHAHIARAHPTASLFLRNSLLAAYCRLGVGAPLHAARLIDEMPRRNAVSYNLLISSYSRA 80

Query: 190 SRPDEVLRMY-NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
             P   L  +     A G+  +  ++   +  CS  + L  GK +H+  + L  +   +F
Sbjct: 81  GLPGRALETFARARAAAGLRVDRFTYAAALAACSRALDLRTGKAVHAMTV-LDGLGNGVF 139

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM---Q 305
           ++N+L   Y++CG + EA++ FD     D +SWNS++S Y       + L++F  M    
Sbjct: 140 LSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCHHG 199

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
           L     ++ S ++     S  G  +  + +HG V K G D   + + SA+ DMY K   +
Sbjct: 200 LGWNSFALGSIIKCCASGSDVGR-HIAEAVHGCVVKAGLD-ADLFLASAMIDMYAKRGAL 257

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNI------KDAVEMFGFMVDEGIGLDEVTLS 419
            ++VA+F+S P  ++   N+++               ++A+ ++  M   G+   E T S
Sbjct: 258 TNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSREALSLYSEMQSRGMQPSEFTFS 317

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L+A +++     G  + +H   +K  F  +  +  +L+D YS  G +E  ++ F  +P
Sbjct: 318 SILRACNLAGEFGFG--KQIHGQVLKHSFHDDDYIGSALIDLYSDSGCMEDGYRCFRSLP 375

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             ++V +TS+++G  +N +  +AL + +  I  GL PD  T   V+  C    + + G+ 
Sbjct: 376 KQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGEQ 435

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +   +   YG +      +  I M  R+G +D      Q+     D + WS+++ S   H
Sbjct: 436 I-QCLAIKYGFNRFTAMGNSFIHMCARSGDVDAVTRRFQEME-SRDVVSWSAVISSHAQH 493

Query: 600 GNEIIGRRVANILM 613
           G      R+ N +M
Sbjct: 494 GCARDALRIFNEMM 507



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 95/393 (24%), Positives = 193/393 (49%), Gaps = 14/393 (3%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++ SN     +   G +  A+++FD     D V++N L+SG  +    ++ L ++  M  
Sbjct: 138 VFLSNSLASMYASCGEMGEARRVFDAAEEHDDVSWNSLLSGYVRAGAREETLKVFSLMCH 197

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGI--QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           HG+  ++    S++  C++       I   +H  V+  G   +L++ S ++D+Y + G  
Sbjct: 198 HGLGWNSFALGSIIKCCASGSDVGRHIAEAVHGCVVKAGLDADLFLASAMIDMYAKRGAL 257

Query: 162 VRALDLFDELPERNLATWNLMLRAFC--------ELSRPDEVLRMYNKMKAEGVEPNGLS 213
             A+ LF  +P+ N+  +N M+  FC        E+SR  E L +Y++M++ G++P+  +
Sbjct: 258 TNAVALFKSVPDPNVIVFNAMIAGFCRDEAAVGKEVSR--EALSLYSEMQSRGMQPSEFT 315

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  ++R C++      GKQ+H  V+K  + D + ++ +AL+D YS  G + +  + F  +
Sbjct: 316 FSSILRACNLAGEFGFGKQIHGQVLKHSFHD-DDYIGSALIDLYSDSGCMEDGYRCFRSL 374

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
           P  D+++W S++S     +L   AL LF        +P + +    +N  +       G+
Sbjct: 375 PKQDIVTWTSMISGCVQNELFEKALRLFQESICYGLKPDLFTMSSVMNACASLAVARTGE 434

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           QI     K GF+  +  + ++   M  +   +++    F+    R +   +++++S    
Sbjct: 435 QIQCLAIKYGFNRFTA-MGNSFIHMCARSGDVDAVTRRFQEMESRDVVSWSAVISSHAQH 493

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           G  +DA+ +F  M++  +  +EVT    L A S
Sbjct: 494 GCARDALRIFNEMMNAKVAPNEVTFLNVLTACS 526



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 63/243 (25%), Positives = 118/243 (48%), Gaps = 1/243 (0%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  +  ID +  SG +    + F  +P +D+VT+  +ISGC +    ++AL L+ E + +
Sbjct: 349 YIGSALIDLYSDSGCMEDGYRCFRSLPKQDIVTWTSMISGCVQNELFEKALRLFQESICY 408

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G+K    T SSV++ C++      G QI C  +  GF     +G+  + +  R G     
Sbjct: 409 GLKPDLFTMSSVMNACASLAVARTGEQIQCLAIKYGFNRFTAMGNSFIHMCARSGDVDAV 468

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
              F E+  R++ +W+ ++ +  +     + LR++N+M    V PN ++F  ++  CS G
Sbjct: 469 TRRFQEMESRDVVSWSAVISSHAQHGCARDALRIFNEMMNAKVAPNEVTFLNVLTACSHG 528

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF-DFIPVDDVISWNS 283
            L+D+G + +  +     +   I     +VD     G L +A+    D    DD + W S
Sbjct: 529 GLVDDGLRYYEIMKNEYGLSPTIKHVTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVWRS 588

Query: 284 IVS 286
           +++
Sbjct: 589 LLA 591


>gi|297819542|ref|XP_002877654.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297323492|gb|EFH53913.1| hypothetical protein ARALYDRAFT_323502 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 1112

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 184/628 (29%), Positives = 326/628 (51%), Gaps = 22/628 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           N  I  + KSG L  AK +F+ M     RD+V+++ +++  G       A+ L+ E +  
Sbjct: 101 NSLISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEM 160

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVR 163
           G+  +   +++V+  CSN+ F   G  I   ++  G F  ++ +G  L+D++++   S  
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFE 220

Query: 164 -ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD++ E N+ TW LM+    ++  P E +R +  M   G E +  +   +   C+
Sbjct: 221 NAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA 280

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVI 279
               L  G+QLHS  I+ G  D    V  +LVD Y+ C   GS+ + +K FD +    V+
Sbjct: 281 ELENLSLGRQLHSWAIRSGLADD---VECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVM 337

Query: 280 SWNSIVSIY-ADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           SW ++++ Y  + +L  +A+ LF  M       P+  +F           +   GKQ+ G
Sbjct: 338 SWTALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLG 397

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           +  K G    +  V +++  M+ KC+ +E +   FES   ++L   N+ +     + + +
Sbjct: 398 HAFKRGL-ASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFE 456

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAV 454
            A E+   + +  +G+   T ++ L     S  AN+GS R    +H   +K G   N  V
Sbjct: 457 HAFELLSEIAERELGVSAFTFASLL-----SGVANVGSLRKGEQIHSQVLKLGLSCNQPV 511

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+  YS+CG I+ + +VF  + + NV+ +TS++ G++++G     L+    M + G+
Sbjct: 512 CNALISMYSKCGSIDTASRVFSLMDNRNVISWTSMITGFAKHGFAERVLETFNQMTKEGV 571

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P++VT++ +L+ C+H G+V EG   FNSM   + I    +HY+CM+D+L RAG+L  A 
Sbjct: 572 KPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAF 631

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E +   P   D ++W + L +CRVH N  +G+  A  ++E +P + A Y Q+SN Y+  G
Sbjct: 632 EFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILEFDPNEPAAYIQLSNIYASAG 691

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEV 662
           ++E S ++R     R L ++ G S IEV
Sbjct: 692 KWEESTEMRRKMKERNLVKEGGCSWIEV 719



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 118/519 (22%), Positives = 242/519 (46%), Gaps = 17/519 (3%)

Query: 92  KQALYLYDEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           + A+   D M   GI+   S TFSS+L  C  A  +  G  +H R++      +  + + 
Sbjct: 43  RGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARHFRLGKLVHARLIEFEIEPDSVLYNS 102

Query: 151 LVDLYMRMGPSVRALDLFDEL---PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
           L+ LY + G   +A D+F+ +    +R++ +W+ M+  F    R  + ++++ +    G+
Sbjct: 103 LISLYSKSGDLTKAKDVFETMGRFGKRDVVSWSAMMACFGNNGREFDAIKLFVEFLEMGL 162

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD-FYSACGSLIEA 266
            PN   +  ++R CS    +  G+ +   ++K G  + ++ V  +L+D F     S   A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVILGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
            K FD +   +V++W  +++         +A+  F  M L        +     +  +  
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV---IESSVAVFESAPGRSLECC 383
            N+  G+Q+H +  + G    +  V+ +L DMY KC+    ++    VF+     S+   
Sbjct: 283 ENLSLGRQLHSWAIRSGL---ADDVECSLVDMYAKCSADGSVDDCRKVFDRMQDHSVMSW 339

Query: 384 NSLMTSLLHSGNI-KDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
            +L+T  + + N+  +A+ +F  M+ +G +  +  T S+  KA    +   +G   L H 
Sbjct: 340 TALITGYMQNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNVSDPRVGKQVLGH- 398

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
            A K G  SN +VS S++  + +C  +E +   FE +   N+V + + ++G  RN     
Sbjct: 399 -AFKRGLASNSSVSNSVISMFVKCDRMEDARTAFESLSEKNLVSYNTFLDGTCRNLDFEH 457

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A ++L  + +R L     TF  +L+G  + G +++G+ + + +  + G+  ++   + +I
Sbjct: 458 AFELLSEIAERELGVSAFTFASLLSGVANVGSLRKGEQIHSQVLKL-GLSCNQPVCNALI 516

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            M  + G +D A  +        + + W+S++     HG
Sbjct: 517 SMYSKCGSIDTASRVFSLM-DNRNVISWTSMITGFAKHG 554


>gi|297814636|ref|XP_002875201.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297814638|ref|XP_002875202.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321039|gb|EFH51460.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321040|gb|EFH51461.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 708

 Score =  287 bits (735), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 165/606 (27%), Positives = 315/606 (51%), Gaps = 8/606 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+   A+ +FD++P  D   + +++          + +  YD ++ HG       FS  L
Sbjct: 102 GYTKDARLVFDQIPEPDFYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKAL 161

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C+       G +IHC+++ +    N+ + + L+D+Y + G    +  +F+++  RN+ 
Sbjct: 162 KACTEVQDLDNGKKIHCQIVKVPSFDNVVL-TGLLDMYAKCGEIKSSYKVFEDITLRNVV 220

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            W  M+  + +    +E L ++N+M+   V  N  ++  +V  C+    L +GK  H  +
Sbjct: 221 CWTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCL 280

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           IK G ++++  +  +L+D Y  CG +  A++ F+     D++ W +++  Y     + +A
Sbjct: 281 IKSG-IELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 339

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L LF +M     +P+  +    L+     GN+  G+ IHG   K+G      +V +AL  
Sbjct: 340 LSLFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGI--WDTNVANALVH 397

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC     +  VFE    + +   NS+++    +G+I +A+ +F  M  E +  + VT
Sbjct: 398 MYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVT 457

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGF--ESNIAVSCSLMDAYSRCGHIELSHQVF 475
           +++   A +   S  +GS   LH  ++K GF   S++ V  +L+D Y++CG  E +  +F
Sbjct: 458 VASLFSACASLGSLAIGSS--LHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIF 515

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           + I   N + +++++ GY + G  + +L++ E M+++   P++ TF  VL+ C+H+GMV 
Sbjct: 516 DTIEEKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVN 575

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG+  F+SM   Y      +HY+CM+DML RAG L++A +++++ P   D   + + L  
Sbjct: 576 EGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHG 635

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           C +H    +G  V   +++L P D + Y  VSN Y+  G +  + ++R     R L++  
Sbjct: 636 CGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMKQRGLSKIA 695

Query: 656 GHSLIE 661
           GHS++E
Sbjct: 696 GHSIME 701



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 136/533 (25%), Positives = 257/533 (48%), Gaps = 12/533 (2%)

Query: 18  PTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVT 77
             CT +  L +   +       P  +       +D + K G + S+ K+F+++  R++V 
Sbjct: 162 KACTEVQDLDNGKKIHCQIVKVPSFDNVVLTGLLDMYAKCGEIKSSYKVFEDITLRNVVC 221

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +  +I+G  K    ++ L L++ M  + +  +  T+ +++  C+      +G   H  ++
Sbjct: 222 WTSMIAGYVKNDLYEEGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLI 281

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR 197
             G  L+  + + L+D+Y++ G    A  +F+E    +L  W  M+  +      +E L 
Sbjct: 282 KSGIELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALS 341

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           ++ KM   G++PN ++   ++ GC +   L+ G+ +H   IK+G  D N  VANALV  Y
Sbjct: 342 LFQKMSGVGIKPNCVTIASVLSGCGLVGNLELGRSIHGLSIKVGIWDTN--VANALVHMY 399

Query: 258 SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
           + C    +AK  F+     D+++WNSI+S ++    I +AL LF RM      P+  +  
Sbjct: 400 AKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVA 459

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGF-DHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
              +  +  G++  G  +H Y  KLGF    SVHV +AL D Y KC   ES+  +F++  
Sbjct: 460 SLFSACASLGSLAIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESARLIFDTIE 519

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
            ++    ++++      G+ K ++E+F  M+ +    +E T ++ L A S +   N G  
Sbjct: 520 EKNTITWSAMIGGYGKQGDTKGSLELFEEMLKKQQKPNESTFTSVLSACSHTGMVNEGK- 578

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSR 495
           +          F  +      ++D  +R G +E +  + EK+P  P+V CF + ++G   
Sbjct: 579 KYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHGC-- 636

Query: 496 NGMGREALDMLEVMIQR--GLIPDKVTFLCVLAGCNHS-GMVKEGQLVFNSMK 545
            GM     D+ E++I++   L PD  ++  +++    S G   + + V N MK
Sbjct: 637 -GM-HSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWSQAKEVRNLMK 687



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 127/480 (26%), Positives = 236/480 (49%), Gaps = 13/480 (2%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +LS C+N        Q H  +   G   ++ I + LV LY   G +  A  +FD++PE +
Sbjct: 62  LLSKCTNIDSLR---QAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPD 118

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
              W ++LR +C  +   EV++ Y+ +   G   + + F   ++ C+    LD GK++H 
Sbjct: 119 FYLWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHC 178

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            ++K+   D N+ V   L+D Y+ CG +  + K F+ I + +V+ W S+++ Y   DL  
Sbjct: 179 QIVKVPSFD-NV-VLTGLLDMYAKCGEIKSSYKVFEDITLRNVVCWTSMIAGYVKNDLYE 236

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           + L LF RM+      +  ++   +   ++   ++ GK  HG + K G +  S  V S L
Sbjct: 237 EGLVLFNRMRENSVLGNEYTYGTLVMACTKLRALHQGKWFHGCLIKSGIELSSCLVTS-L 295

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMY KC  I ++  VF       L    +++    H+G++ +A+ +F  M   GI  + 
Sbjct: 296 LDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMSGVGIKPNC 355

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIELSHQV 474
           VT+++ L    +  +  LG  R +H  +IK G +++N+A   +L+  Y++C     +  V
Sbjct: 356 VTIASVLSGCGLVGNLELG--RSIHGLSIKVGIWDTNVA--NALVHMYAKCYQNRDAKYV 411

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           FE     ++V + SI++G+S+NG   EAL +   M    ++P+ VT   + + C   G +
Sbjct: 412 FEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNTESVMPNGVTVASLFSACASLGSL 471

Query: 535 KEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             G  L   S+K  +   +     + ++D   + G  + A  L+  T    + + WS+++
Sbjct: 472 AIGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDAESA-RLIFDTIEEKNTITWSAMI 530



 Score = 47.4 bits (111), Expect = 0.022,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 2/154 (1%)

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           L +S   N+ S R  H     +G   +I+++  L+  Y   G+ + +  VF++IP P+  
Sbjct: 61  LLLSKCTNIDSLRQAHGVLTGNGLMGDISIATKLVSLYGSFGYTKDARLVFDQIPEPDFY 120

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +  I+  Y  N    E +   +++++ G   D + F   L  C     +  G+ +   +
Sbjct: 121 LWKVILRCYCLNNESFEVIKFYDLLMKHGFGYDDIVFSKALKACTEVQDLDNGKKIHCQI 180

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
             V     D    + ++DM  + G +  + ++ +
Sbjct: 181 VKVPSF--DNVVLTGLLDMYAKCGEIKSSYKVFE 212


>gi|147780613|emb|CAN69119.1| hypothetical protein VITISV_031846 [Vitis vinifera]
          Length = 654

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 174/600 (29%), Positives = 315/600 (52%), Gaps = 9/600 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF--RHPKQALYLYDEM 101
           +Y +N  ++ + K   L  AK +F+ +  +D+V++N +I+G  +         + L+  M
Sbjct: 40  VYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIINGYSQHGPSGSSHVMELFQRM 99

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            +     +A TF+ V +  S       G   H   + +    ++++GS L+++Y + G +
Sbjct: 100 RAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMDSCRDVFVGSSLMNMYCKAGLT 159

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD +PERN  +W  M+  +       E L ++  M+ E    N   F  ++   
Sbjct: 160 PEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMRREEEGENEFVFTSVLSAL 219

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           ++  L++ GKQ+H   +K G + + + V NALV  Y+ CGSL +A ++F+     + I+W
Sbjct: 220 TLPELVNNGKQIHCIAVKNGLLSI-VSVGNALVTMYAKCGSLDDALQTFETSSDKNSITW 278

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +++++  A       AL+LF  M L   RPS  +FV  +N  S  G  + GKQ+H Y+ K
Sbjct: 279 SAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLK 338

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LGF+   ++V +AL DMY KC+ I  +   F+      +    S++   + +G  +DA+ 
Sbjct: 339 LGFE-SQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALS 397

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           ++G M  EGI  +E+T+++ LKA S  A+   G  + +H   +K GF   + +  +L   
Sbjct: 398 LYGRMEMEGILPNELTMASVLKACSSLAALEQG--KQIHARTVKYGFGLEVPIGSALSTM 455

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG ++    VF ++P+ +V+ + ++++G S+NG G+EAL++ E M   G  PD VTF
Sbjct: 456 YAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTF 515

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L+ C+H G+V+ G   F  M   +G+D   +HY+CM+D+L RAG L +A E  +   
Sbjct: 516 VNILSACSHMGLVERGWGYFRMMFDEFGMDPRVEHYACMVDILSRAGKLKEAIEFTESAT 575

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  MW  + R  R+     + +      +EL+     V+      + +IG+  V ++
Sbjct: 576 --IDHGMWEDVERVRRMMKLRGVSKEPGCSWIELKS-GVHVFVVKDQMHPQIGDIHVELR 632



 Score =  200 bits (508), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 198/384 (51%), Gaps = 2/384 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  ++ + K+G    A+K+FD MP R+ V++  +ISG    +   +AL L+  M 
Sbjct: 142 DVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFRLMR 201

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                E+   F+SVLS  +       G QIHC  +  G    + +G+ LV +Y + G   
Sbjct: 202 REEEGENEFVFTSVLSALTLPELVNNGKQIHCIAVKNGLLSIVSVGNALVTMYAKCGSLD 261

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            AL  F+   ++N  TW+ M+    +    D+ L++++ M   G+ P+  +F  ++  CS
Sbjct: 262 DALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGVINACS 321

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                 EGKQ+H +++KLG+ +  I+V  ALVD Y+ C S+++A+K FD++   D++ W 
Sbjct: 322 DLGAAWEGKQVHDYLLKLGF-ESQIYVMTALVDMYAKCSSIVDARKGFDYLQEPDIVLWT 380

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S++  Y       DAL L+ RM++    P+  +    L   S    +  GKQIH    K 
Sbjct: 381 SMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASVLKACSSLAALEQGKQIHARTVKY 440

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GF    V + SAL+ MY KC  ++    VF   P R +   N++++ L  +G  K+A+E+
Sbjct: 441 GFGL-EVPIGSALSTMYAKCGCLKDGTLVFRRMPARDVISWNAMISGLSQNGCGKEALEL 499

Query: 403 FGFMVDEGIGLDEVTLSTTLKALS 426
           F  M  EG   D VT    L A S
Sbjct: 500 FEEMQLEGTKPDYVTFVNILSACS 523



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 104/342 (30%), Positives = 176/342 (51%), Gaps = 10/342 (2%)

Query: 39  NPQLNIYS-SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL 97
           N  L+I S  N  +  + K G L+ A + F+    ++ +T++ +I+G  +     +AL L
Sbjct: 238 NGLLSIVSVGNALVTMYAKCGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKL 297

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           +  M   GI+ S  TF  V++ CS+ G   EG Q+H  +L LGF   +Y+ + LVD+Y +
Sbjct: 298 FSSMHLSGIRPSEFTFVGVINACSDLGAAWEGKQVHDYLLKLGFESQIYVMTALVDMYAK 357

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
               V A   FD L E ++  W  M+  + +    ++ L +Y +M+ EG+ PN L+   +
Sbjct: 358 CSSIVDARKGFDYLQEPDIVLWTSMIGGYVQNGENEDALSLYGRMEMEGILPNELTMASV 417

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           ++ CS    L++GKQ+H+  +K G+  + + + +AL   Y+ CG L +    F  +P  D
Sbjct: 418 LKACSSLAALEQGKQIHARTVKYGF-GLEVPIGSALSTMYAKCGCLKDGTLVFRRMPARD 476

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           VISWN+++S  +      +ALELF  MQL   +P   +FV  L+  S  G V  G    G
Sbjct: 477 VISWNAMISGLSQNGCGKEALELFEEMQLEGTKPDYVTFVNILSACSHMGLVERG---WG 533

Query: 338 Y----VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
           Y      + G D    H  + + D+  +   ++ ++   ESA
Sbjct: 534 YFRMMFDEFGMDPRVEHY-ACMVDILSRAGKLKEAIEFTESA 574



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 101/372 (27%), Positives = 191/372 (51%), Gaps = 15/372 (4%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +GK LH+ +IK       +++AN+LV+ Y+ C  L EAK  F+ I   DV+SWN I++
Sbjct: 22  LQKGKALHAQIIKSS--SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVVSWNCIIN 79

Query: 287 IYADYDLIFDA--LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
            Y+ +     +  +ELF RM+     P+  +F      AS   +   G+  H    K+  
Sbjct: 80  GYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRLAHAVAIKMD- 138

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               V V S+L +MY K  +   +  VF++ P R+     ++++         +A+ +F 
Sbjct: 139 SCRDVFVGSSLMNMYCKAGLTPEARKVFDTMPERNSVSWATMISGYASQKLAAEALGLFR 198

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  E  G +E   ++ L AL++    N G  + +HC A+K+G  S ++V  +L+  Y++
Sbjct: 199 LMRREEEGENEFVFTSVLSALTLPELVNNG--KQIHCIAVKNGLLSIVSVGNALVTMYAK 256

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG ++ + Q FE     N + +++++ G +++G   +AL +   M   G+ P + TF+ V
Sbjct: 257 CGSLDDALQTFETSSDKNSITWSAMITGXAQSGDSDKALKLFSSMHLSGIRPSEFTFVGV 316

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR-AGILD--KAEELLQQTP 581
           +  C+  G   EG+ V + +  + G ++     + ++DM  + + I+D  K  + LQ+  
Sbjct: 317 INACSDLGAAWEGKQVHDYLLKL-GFESQIYVMTALVDMYAKCSSIVDARKGFDYLQEP- 374

Query: 582 GGGDCMMWSSLL 593
              D ++W+S++
Sbjct: 375 ---DIVLWTSMI 383



 Score = 48.1 bits (113), Expect = 0.015,   Method: Compositional matrix adjust.
 Identities = 40/173 (23%), Positives = 85/173 (49%), Gaps = 9/173 (5%)

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           L  + + +L   + LH   IKS   S + ++ SL++ Y++C  +  +  VFE+I + +VV
Sbjct: 14  LQYTHNRSLQKGKALHAQIIKSS-SSCVYIANSLVNLYAKCQRLREAKFVFERIQNKDVV 72

Query: 485 CFTSIMNGYSRNGM--GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
            +  I+NGYS++G       +++ + M      P+  TF  V    +       G+L   
Sbjct: 73  SWNCIINGYSQHGPSGSSHVMELFQRMRAENTAPNAHTFAGVFTAASTLVDAAGGRL--- 129

Query: 543 SMKSVYGIDADRQHY--SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +      +D+ R  +  S +++M  +AG+  +A ++    P   + + W++++
Sbjct: 130 AHAVAIKMDSCRDVFVGSSLMNMYCKAGLTPEARKVFDTMP-ERNSVSWATMI 181


>gi|357167803|ref|XP_003581340.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Brachypodium distachyon]
          Length = 940

 Score =  287 bits (734), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 185/628 (29%), Positives = 329/628 (52%), Gaps = 12/628 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           + + +N  I  + K G L+SA ++F+ M   RD+ ++N +ISGC +     QAL L+  M
Sbjct: 198 STFVANALIAMYAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGM 257

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +  ++ T   VL VC+       G ++H  +L  G  +N+   + LV +Y + G  
Sbjct: 258 QRAVLSMNSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVNIQCNALLV-MYTKCGRV 316

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             AL +F E+ E++  +WN ML  + +     E +   ++M   G +P+    C +    
Sbjct: 317 DSALRVFREIDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPD--HACIVSLSS 374

Query: 222 SIGML--LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           ++G L  L  GK++H++ IK   +D +  V N L+D Y  C  +  +   FD + + D I
Sbjct: 375 AVGHLGWLLNGKEVHAYAIKQR-LDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHI 433

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +I++ YA      +ALE+F   Q    +         L   S    +   KQ+H Y 
Sbjct: 434 SWTTIITCYAQSSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYA 493

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + G     + V++ + D+YG+C  +  S+ +FE+   + +    S++    +SG + +A
Sbjct: 494 IRNGLL--DLVVKNRIIDIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEA 551

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  M    +  D V L + L A  +   ++L   + +H   I+  F    A+  SL+
Sbjct: 552 LVLFAEMQSTDVQPDSVALVSILGA--IGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLV 609

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D YS CG +  + +VF  +   ++V +T+++N    +G G++A+D+ + M+Q G+ PD V
Sbjct: 610 DMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHGKQAIDLFKRMLQTGVTPDHV 669

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +FL +L  C+HS +V EG+   + M S Y ++  ++HY+C++D+LGR+G  ++A E ++ 
Sbjct: 670 SFLALLYACSHSKLVNEGKCYLDMMMSTYRLEPWQEHYACVVDLLGRSGQTEEAYEFIKS 729

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P     ++W SLL +CRVH N  +    AN L+ELEP +   Y  VSN ++E+G++  +
Sbjct: 730 MPLKPKSVVWCSLLGACRVHKNHELAVVAANRLLELEPDNPGNYVLVSNVFAEMGKWNNA 789

Query: 640 MQIRETALARKLTRDIGHSLIEV-NSCH 666
            ++R     R L +D   S IE+ N+ H
Sbjct: 790 KEVRARISERGLRKDPACSWIEIGNNVH 817



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/558 (25%), Positives = 262/558 (46%), Gaps = 24/558 (4%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM---VSHGIKESA 110
           + K G +  A+ LFD M +R + ++N LI          +AL +Y  M    + G+    
Sbjct: 105 YGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASGVAPDG 164

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T +SVL      G    G ++H   +  G   + ++ + L+ +Y + G    A+ +F+ 
Sbjct: 165 CTLASVLKASGVEGDGRCGCEVHGLAVKHGLDRSTFVANALIAMYAKCGILDSAMRVFEL 224

Query: 171 LPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           + + R++A+WN M+    +     + L ++  M+   +  N  +   +++ C+    L+ 
Sbjct: 225 MHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYTTVGVLQVCTELAQLNL 284

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G++LH+ ++K G  +VNI   NAL+  Y+ CG +  A + F  I   D ISWNS++S Y 
Sbjct: 285 GRELHAALLKSG-SEVNI-QCNALLVMYTKCGRVDSALRVFREIDEKDYISWNSMLSCYV 342

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
              L  +A+E    M     +P     V   +     G +  GK++H Y  K   D    
Sbjct: 343 QNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNGKEVHAYAIKQRLD-SDT 401

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V + L DMY KC  IE S  VF+    +      +++T    S    +A+E+F     E
Sbjct: 402 QVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRHIEALEIFREAQKE 461

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           GI +D + + + L+A S   +  L   + LHC AI++G   ++ V   ++D Y  CG + 
Sbjct: 462 GIKVDPMMIGSILEACSGLETILLA--KQLHCYAIRNGL-LDLVVKNRIIDIYGECGEVY 518

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            S ++FE +   ++V +TS++N Y+ +G+  EAL +   M    + PD V  + +L    
Sbjct: 519 HSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIG 578

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHY------SCMIDMLGRAGILDKAEELLQQTPGG 583
               + +G       K V+G    R  +      S ++DM    G L  A ++       
Sbjct: 579 GLSSLAKG-------KEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVK-C 630

Query: 584 GDCMMWSSLLRSCRVHGN 601
            D ++W++++ +  +HG+
Sbjct: 631 KDMVLWTAMINATGMHGH 648



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 148/596 (24%), Positives = 274/596 (45%), Gaps = 57/596 (9%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF--GLNLYIGS 149
           +QAL L       G       +  VL + +      +G+Q+H   ++ G   G + ++ +
Sbjct: 41  RQALRLLTSQTP-GRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGSLEGDDGFLAT 99

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK---AEG 206
            L+ +Y + G    A  LFD +  R + +WN ++ A+       E L +Y  M+   A G
Sbjct: 100 KLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSAASG 159

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           V P+G +   +++   +      G ++H   +K G +D + FVANAL+  Y+ CG L  A
Sbjct: 160 VAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHG-LDRSTFVANALIAMYAKCGILDSA 218

Query: 267 KKSFDFI-PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF--VEFLNFA 323
            + F+ +    DV SWNS++S      +   AL+LF  MQ  R   S+ S+  V  L   
Sbjct: 219 MRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQ--RAVLSMNSYTTVGVLQVC 276

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQ-SALTDMYGKCNVIESSVAVFESAPGRSLEC 382
           +    +  G+++H  + K G +   V++Q +AL  MY KC  ++S++ VF     +    
Sbjct: 277 TELAQLNLGRELHAALLKSGSE---VNIQCNALLVMYTKCGRVDSALRVFREIDEKDYIS 333

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE---VTLSTTLKALSVSASANLGSCRLL 439
            NS+++  + +G   +A+E    M+  G   D    V+LS+ +  L       L + + +
Sbjct: 334 WNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGW-----LLNGKEV 388

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H  AIK   +S+  V  +LMD Y +C +IE S  VF+++   + + +T+I+  Y+++   
Sbjct: 389 HAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQSSRH 448

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCN-----------HSGMVKEGQL---VFNSMK 545
            EAL++     + G+  D +    +L  C+           H   ++ G L   V N + 
Sbjct: 449 IEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRII 508

Query: 546 SVYGIDADRQH---------------YSCMIDMLGRAGILDKAEEL---LQQTPGGGDCM 587
            +YG   +  H               ++ MI+    +G+L++A  L   +Q T    D +
Sbjct: 509 DIYGECGEVYHSLKMFETVEQKDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSV 568

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFAVYSQVSNFYSEIGEFEVSMQI 642
              S+L +     +   G+ V   L+     ++ A+ S + + YS  G    ++++
Sbjct: 569 ALVSILGAIGGLSSLAKGKEVHGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKV 624



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/502 (23%), Positives = 233/502 (46%), Gaps = 45/502 (8%)

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           L+  C+     + LR+    +  G  P    + +++   +    + +G Q+H+H +  G 
Sbjct: 31  LKQLCKEGNLRQALRLLTS-QTPGRSPPQEHYGWVLDLVAAKKAVAQGVQVHAHAVATGS 89

Query: 243 VDVNI-FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
           ++ +  F+A  L+  Y  CG + +A+  FD +    V SWN+++  Y       +AL ++
Sbjct: 90  LEGDDGFLATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVY 149

Query: 302 FRMQLCRKR---PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
             M+L       P   +    L  +   G+   G ++HG   K G D  S  V +AL  M
Sbjct: 150 RAMRLSAASGVAPDGCTLASVLKASGVEGDGRCGCEVHGLAVKHGLDR-STFVANALIAM 208

Query: 359 YGKCNVIESSVAVFE-SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           Y KC +++S++ VFE    GR +   NS+++  L +G    A+++F  M    + ++  T
Sbjct: 209 YAKCGILDSAMRVFELMHDGRDVASWNSMISGCLQNGMFLQALDLFRGMQRAVLSMNSYT 268

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L+  +  A  NLG  R LH   +KSG E NI  + +L+  Y++CG ++ + +VF +
Sbjct: 269 TVGVLQVCTELAQLNLG--RELHAALLKSGSEVNIQCN-ALLVMYTKCGRVDSALRVFRE 325

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           I   + + + S+++ Y +NG+  EA++ +  M++ G  PD    + + +   H G +  G
Sbjct: 326 IDEKDYISWNSMLSCYVQNGLYAEAIEFISEMLRGGFQPDHACIVSLSSAVGHLGWLLNG 385

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGR-------AGILDK------------------ 572
           + V ++      +D+D Q  + ++DM  +       A + D+                  
Sbjct: 386 KEV-HAYAIKQRLDSDTQVGNTLMDMYMKCRYIEYSAHVFDRMRIKDHISWTTIITCYAQ 444

Query: 573 ------AEELLQQTPGGG---DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623
                 A E+ ++    G   D MM  S+L +C      ++ +++    +    +D  V 
Sbjct: 445 SSRHIEALEIFREAQKEGIKVDPMMIGSILEACSGLETILLAKQLHCYAIRNGLLDLVVK 504

Query: 624 SQVSNFYSEIGEFEVSMQIRET 645
           +++ + Y E GE   S+++ ET
Sbjct: 505 NRIIDIYGECGEVYHSLKMFET 526



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 53/219 (24%), Positives = 104/219 (47%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA 72
           I ++   C+ +  +  +  L  Y   N  L++   NR ID + + G +  + K+F+ +  
Sbjct: 470 IGSILEACSGLETILLAKQLHCYAIRNGLLDLVVKNRIIDIYGECGEVYHSLKMFETVEQ 529

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           +D+VT+  +I+         +AL L+ EM S  ++  +    S+L          +G ++
Sbjct: 530 KDIVTWTSMINCYANSGLLNEALVLFAEMQSTDVQPDSVALVSILGAIGGLSSLAKGKEV 589

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  ++   F +   I S LVD+Y   G    AL +F+ +  +++  W  M+ A       
Sbjct: 590 HGFLIRRNFHMEEAIVSSLVDMYSGCGSLSGALKVFNAVKCKDMVLWTAMINATGMHGHG 649

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            + + ++ +M   GV P+ +SF  ++  CS   L++EGK
Sbjct: 650 KQAIDLFKRMLQTGVTPDHVSFLALLYACSHSKLVNEGK 688



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 54/219 (24%), Positives = 94/219 (42%), Gaps = 24/219 (10%)

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM---I 510
           ++  L+  Y +CG +  +  +F+ + S  V  + +++  Y  +G   EAL +   M    
Sbjct: 97  LATKLLFMYGKCGRVADARLLFDGMSSRTVFSWNALIGAYLSSGSACEALGVYRAMRLSA 156

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G+ PD  T   VL      G  + G  V + +   +G+D      + +I M  + GIL
Sbjct: 157 ASGVAPDGCTLASVLKASGVEGDGRCGCEV-HGLAVKHGLDRSTFVANALIAMYAKCGIL 215

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF------AVYS 624
           D A  + +    G D   W+S++  C  +G            M L+ +D       AV S
Sbjct: 216 DSAMRVFELMHDGRDVASWNSMISGCLQNG------------MFLQALDLFRGMQRAVLS 263

Query: 625 QVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
              N Y+ +G  +V  ++ +  L R+L   +  S  EVN
Sbjct: 264 M--NSYTTVGVLQVCTELAQLNLGRELHAALLKSGSEVN 300


>gi|296085266|emb|CBI28998.3| unnamed protein product [Vitis vinifera]
          Length = 732

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/627 (27%), Positives = 318/627 (50%), Gaps = 11/627 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I+S N  I  + K G L    K+F EMP +++V++ L++SG  +    +  L +Y EM+
Sbjct: 110 DIFSQNNLIRMYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMI 169

Query: 103 SHGIKESASTFSSVLSVCSN------AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
             G+  +      V   C+        G    G QIH  ++    G +  + + L+D+Y 
Sbjct: 170 RTGLVPNEFALGCVTKACAALGGCLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYF 229

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G  + AL +FD L ++++ +WN +     +     E+ R ++K+   G++PN ++F  
Sbjct: 230 KNGGGLYALKVFDRLQDKDIISWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSI 289

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           + R C   + L  G Q H    + G  D    V ++L++ +S CG++  A   FD  P  
Sbjct: 290 LFRFCGEALDLVSGLQFHCLAFRFGISD-EASVTSSLINMFSRCGAMRMACLVFDSAPFK 348

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
            + + N ++S Y       +AL LF  +          +F   L    RT N   G+Q+H
Sbjct: 349 SIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEADECTFSSALEACFRTENQKLGRQMH 408

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G + K GF     +V S+L   Y    +++ S   F       L    +++++L+H G  
Sbjct: 409 GTIVKSGFASQG-YVCSSLLKCYVGFGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYS 467

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            +A+ +   + + G   DE    +     +  A+      + +H   +K G+E+++ V+ 
Sbjct: 468 SEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAAYR--QTKSVHSLVVKMGYEAHVFVAS 525

Query: 457 SLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
           +++DAY++CG IE + +VF++     +V+ F +++  Y+ +G+ REA++  E M    L 
Sbjct: 526 AVIDAYAKCGDIENARRVFDQTSRFRDVILFNTMVMAYAHHGLVREAVETFEKMKLATLE 585

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P + TF+ V++ C+H G+V++G + F SM   YG+D    +Y C++D+  R G L+ A+ 
Sbjct: 586 PSQATFVSVISACSHLGLVEQGDIFFKSMNLDYGMDPSPDNYGCLVDLFSRNGFLEDAKH 645

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           +++  P      +W SLL  CR+HGN+ +G   A  L++L P + A Y  +S  YSE G 
Sbjct: 646 IIETMPFPPWPAIWRSLLNGCRIHGNKELGEWAAKKLLQLVPENDAAYVLLSKVYSEEGS 705

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           +  + ++R+  + R L +D G S IE+
Sbjct: 706 WSDAAKVRKGMIERGLWKDPGCSWIEI 732



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 130/530 (24%), Positives = 248/530 (46%), Gaps = 13/530 (2%)

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
            +   +  S+ L+  +N+     G QIH +++ LGF  +++  + L+ +Y + G     L
Sbjct: 72  FRNDPTALSTALTHSANSKCILLGSQIHAQIIKLGFCNDIFSQNNLIRMYTKCGFLAGGL 131

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF------CYMVR 219
            +F E+P +NL +W L++    +    +  L +Y +M   G+ PN  +       C  + 
Sbjct: 132 KVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFALGCVTKACAALG 191

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           GC +   L+ G+Q+H  +I+   V  +  V N+L+D Y   G  + A K FD +   D+I
Sbjct: 192 GCLVVGNLNFGRQIHGLIIQ-SEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDII 250

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN++ +  +  D   +    F ++ L   +P+  +F     F     ++  G Q H   
Sbjct: 251 SWNTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLA 310

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + G       V S+L +M+ +C  +  +  VF+SAP +S+  CN +++    + +  +A
Sbjct: 311 FRFGISD-EASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEA 369

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  +   G+  DE T S+ L+A   + +  LG  R +H   +KSGF S   V  SL+
Sbjct: 370 LNLFCNLNGLGLEADECTFSSALEACFRTENQKLG--RQMHGTIVKSGFASQGYVCSSLL 427

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y   G ++ S + F  +   ++V + ++++     G   EA+ +L  + + G  PD+ 
Sbjct: 428 KCYVGFGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEF 487

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            F  +   C      ++ + V +S+    G +A     S +ID   + G ++ A  +  Q
Sbjct: 488 IFGSIFNCCAGIAAYRQTKSV-HSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQ 546

Query: 580 TPGGGDCMMWSSLLRSCRVHG--NEIIGRRVANILMELEPVDFAVYSQVS 627
           T    D +++++++ +   HG   E +       L  LEP      S +S
Sbjct: 547 TSRFRDVILFNTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVIS 596


>gi|302142249|emb|CBI19452.3| unnamed protein product [Vitis vinifera]
          Length = 921

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 191/643 (29%), Positives = 343/643 (53%), Gaps = 39/643 (6%)

Query: 51  IDDFVKSGHLNSAKKLFDE--MPARDMVTYNLLIS-----GCGKFRHPKQALYLYDEMVS 103
           I  + + G L  A+++FDE  + A D++ +N +I+     GC       + L L+ +MVS
Sbjct: 163 ITMYSRCGVLEDAQRVFDETSLLALDILLWNSIIAAYIFHGCWV-----EVLRLFCKMVS 217

Query: 104 HGI-KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPS 161
            G+   +  T++SV++ C ++G    G  +H R++  G    NL+  + LV  Y + G  
Sbjct: 218 VGVVAPTELTYASVVNACGSSGEEKYGAMVHGRIIKAGLEATNLW--NSLVTFYGKCGNL 275

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEG-VEPNGLSFCYMVR 219
             A  LF+ +  +++ +WN M+ A  +    +  L ++ +M K E  V+PN ++F  ++ 
Sbjct: 276 QHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPPVQPNRVTFLSLLS 335

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             S    L  G+++H+H+ +L  ++V+  + N+L+ FYS C  + +A++ F+ + + D+I
Sbjct: 336 AVSGLSALRCGREIHAHIFRLS-LEVDTSITNSLITFYSKCREVGKAREIFERLLLRDII 394

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR--TGNVYF--GKQI 335
           SWNS+++ Y   +      ++F RM L    P   S     N ASR  +G +YF  GK+I
Sbjct: 395 SWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDSSGLIYFRRGKEI 454

Query: 336 HGYVTKLGFDHG-SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           HGY+ +     G S+ V +A+  MY K N I  +  +F+    R     N++M     + 
Sbjct: 455 HGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYSWNAMMDGYSRNA 514

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK-------SG 447
             +D + +F  ++ +G  LD V+LS  L +     S  LG  +  H    K         
Sbjct: 515 KFEDVLMIFLDILKQGFPLDHVSLSILLTSCGRLVSLQLG--KQFHAVVAKLFNGQDCPH 572

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            +S ++++ +L+  YS+CG I+ + QVF K+   +V  +T+++ G + +G+  EAL + E
Sbjct: 573 QDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFE 632

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M   G+ P++VTFL +L  C H G+V+EG   F+SM + YG+    +HY+CMID+ GR+
Sbjct: 633 RMKTDGIKPNQVTFLALLMACAHGGLVQEGSYYFDSMYNDYGLSPSIEHYACMIDLFGRS 692

Query: 568 GILDKAEELLQ-----QTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621
           G  D+A+ L++       P   D + +W  LL +C       +G   A  ++ELEP D A
Sbjct: 693 GQFDRAKSLVEFGITLFKPYHDDILNLWKVLLGACHASKQLDLGVEAATKILELEPEDEA 752

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            Y  ++N Y+  G +E ++++R+    + L +++G S I+  +
Sbjct: 753 TYILLANLYASSGLWEDAIKVRKAMRDKGLRKEVGCSWIDTGN 795



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 141/560 (25%), Positives = 264/560 (47%), Gaps = 27/560 (4%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLI---SGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           L  A++LFD  P RD+++++ LI   S CG F    QA  L+ +M+  G++ +  + +S+
Sbjct: 71  LKCAQQLFDNFPNRDVISWSALIAAYSRCGNF---AQAFGLFQKMMGEGLQPNGFSLASL 127

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE--LPER 174
           L V  + G      Q+H   +  GFGL+  I +  + +Y R G    A  +FDE  L   
Sbjct: 128 LKVSCSTGEIGLCRQLHGWSIRTGFGLDSGIRAAWITMYSRCGVLEDAQRVFDETSLLAL 187

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++  WN ++ A+       EVLR++ KM + G V P  L++  +V  C        G  +
Sbjct: 188 DILLWNSIIAAYIFHGCWVEVLRLFCKMVSVGVVAPTELTYASVVNACGSSGEEKYGAMV 247

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  +IK G    N++  N+LV FY  CG+L  A + F+ I   DV+SWN++++       
Sbjct: 248 HGRIIKAGLEATNLW--NSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGE 305

Query: 294 IFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
             +AL LF RM       +P+  +F+  L+  S    +  G++IH ++ +L  +  +  +
Sbjct: 306 GENALGLFRRMLKVEPPVQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDT-SI 364

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            ++L   Y KC  +  +  +FE    R +   NS++     +       ++F  M+  GI
Sbjct: 365 TNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGI 424

Query: 412 GLDEVTLSTTLKALSVSASA--NLGSCRLLHCCAIKSGFESNIAVSCS--LMDAYSRCGH 467
             D  +L+    A S  +S        + +H   ++      +++S S  ++  Y++   
Sbjct: 425 EPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNR 484

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           I  + ++F+ + + +   + ++M+GYSRN    + L +   ++++G   D V+   +L  
Sbjct: 485 IADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLTS 544

Query: 528 CNHSGMVKEGQLVFNSMKSVY-GIDADRQHY-----SCMIDMLGRAG-ILDKAEELLQQT 580
           C     ++ G+     +  ++ G D   Q       + +I M  + G I D A+  L+  
Sbjct: 545 CGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKME 604

Query: 581 PGGGDCMMWSSLLRSCRVHG 600
               D   W++++  C  HG
Sbjct: 605 R--KDVFSWTAMITGCAHHG 622



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 106/443 (23%), Positives = 198/443 (44%), Gaps = 16/443 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM--VSHG 105
           N  +  + K G+L  A +LF+ +  +D+V++N +I+   +    + AL L+  M  V   
Sbjct: 263 NSLVTFYGKCGNLQHASQLFERISRKDVVSWNAMIAANEQRGEGENALGLFRRMLKVEPP 322

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           ++ +  TF S+LS  S       G +IH  +  L   ++  I + L+  Y +     +A 
Sbjct: 323 VQPNRVTFLSLLSAVSGLSALRCGREIHAHIFRLSLEVDTSITNSLITFYSKCREVGKAR 382

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS----FCYMVRGC 221
           ++F+ L  R++ +WN ML  + +  +      ++ +M   G+EP+  S    F    R  
Sbjct: 383 EIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGIEPDSHSLTIIFNAASRDS 442

Query: 222 SIGMLLDEGKQLHSHVI-KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           S  +    GK++H +++ ++    V++ V+NA++  Y+    + +A+K F  +   D  S
Sbjct: 443 SGLIYFRRGKEIHGYILRRITPGGVSLSVSNAILKMYAKFNRIADAEKIFKGMKNRDSYS 502

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR-SFVEFLNFASRTGNVYFGKQIHGYV 339
           WN+++  Y+      D L +F  + L +  P    S    L    R  ++  GKQ H  V
Sbjct: 503 WNAMMDGYSRNAKFEDVLMIFLDI-LKQGFPLDHVSLSILLTSCGRLVSLQLGKQFHAVV 561

Query: 340 TKLGFDHGSVH------VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            KL       H      + +AL  MY KC  I+ +  VF     + +    +++T   H 
Sbjct: 562 AKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHH 621

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G   +A+++F  M  +GI  ++VT    L A +       GS           G   +I 
Sbjct: 622 GLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGS-YYFDSMYNDYGLSPSIE 680

Query: 454 VSCSLMDAYSRCGHIELSHQVFE 476
               ++D + R G  + +  + E
Sbjct: 681 HYACMIDLFGRSGQFDRAKSLVE 703



 Score =  105 bits (261), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 76/343 (22%), Positives = 167/343 (48%), Gaps = 20/343 (5%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  + K   +  A+++F+ +  RD++++N +++G  +     +   ++  M+  GI
Sbjct: 365 TNSLITFYSKCREVGKAREIFERLLLRDIISWNSMLAGYEQNEQQGRCFDIFKRMMLSGI 424

Query: 107 KESASTFSSVLSVCSNAG----FYTEGIQIH---CRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +  + + + + +  S       ++  G +IH    R ++ G G++L + + ++ +Y +  
Sbjct: 425 EPDSHSLTIIFNAASRDSSGLIYFRRGKEIHGYILRRITPG-GVSLSVSNAILKMYAKFN 483

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +F  +  R+  +WN M+  +   ++ ++VL ++  +  +G   + +S   ++ 
Sbjct: 484 RIADAEKIFKGMKNRDSYSWNAMMDGYSRNAKFEDVLMIFLDILKQGFPLDHVSLSILLT 543

Query: 220 GCSIGMLLDEGKQLHSHVIKL------GWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
            C   + L  GKQ H+ V KL         D  + + NAL+  YS CGS+ +A + F  +
Sbjct: 544 SCGRLVSLQLGKQFHAVVAKLFNGQDCPHQDSLLSINNALISMYSKCGSIKDAAQVFLKM 603

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              DV SW ++++  A + L  +AL+LF RM+    +P+  +F+  L   +  G V  G 
Sbjct: 604 ERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGIKPNQVTFLALLMACAHGGLVQEGS 663

Query: 334 QIHGYVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVAVFE 373
               Y   +  D+G   S+   + + D++G+    + + ++ E
Sbjct: 664 Y---YFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRAKSLVE 703



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 42/154 (27%), Positives = 76/154 (49%), Gaps = 11/154 (7%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  + K G +  A ++F +M  +D+ ++  +I+GC       +AL L++ M + GI
Sbjct: 580 NNALISMYSKCGSIKDAAQVFLKMERKDVFSWTAMITGCAHHGLAVEALQLFERMKTDGI 639

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRA 164
           K +  TF ++L  C++ G   EG   +   +   +GL+  I   + ++DL+ R G   RA
Sbjct: 640 KPNQVTFLALLMACAHGGLVQEG-SYYFDSMYNDYGLSPSIEHYACMIDLFGRSGQFDRA 698

Query: 165 -------LDLFDELPERNLATWNLMLRAFCELSR 191
                  + LF    +  L  W ++L A C  S+
Sbjct: 699 KSLVEFGITLFKPYHDDILNLWKVLLGA-CHASK 731


>gi|116310930|emb|CAH67868.1| B0403H10-OSIGBa0105A11.20 [Oryza sativa Indica Group]
          Length = 804

 Score =  287 bits (734), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/643 (27%), Positives = 335/643 (52%), Gaps = 17/643 (2%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L D+    N  LN+Y+S+       +   ++  ++LFD MP R++V++N L     K   
Sbjct: 138 LPDTAVLRNSLLNLYASSVRY----REARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGR 193

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIG 148
           P++AL L+  M+  G + +  +F ++    + A   +   Q++  ++  G     +L++ 
Sbjct: 194 PQEALELFVRMLEDGFRPTPVSFVNIFP-AAVADDPSWPFQLYGLLVKYGVEYINDLFVV 252

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGV 207
           S  +D++   G    A  +FD   ++N   WN M+  + +  +  E + +++K + +  V
Sbjct: 253 SSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREV 312

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
             + ++F   +   S    +  G+QLH ++IK     + + + NALV  YS CG++  A 
Sbjct: 313 PLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAF 372

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
             FD +P  D+++WN++V+ +   D   + L L + MQ         +    L+ +S TG
Sbjct: 373 DLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTG 432

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES--APGRSLECCNS 385
           ++  GKQ HGY+ + G +   +  +S L DMY K   +E +  VF+S     R     N+
Sbjct: 433 DLQIGKQAHGYLIRHGIEGEGL--ESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNA 490

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++     SG  + A+ +F  M++ G+    VTL++ L A        + S + +HC A++
Sbjct: 491 MIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACD-PVGGGVYSGKQIHCFAVR 549

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
              ++N+ V  +L+D YS+CG I  +  VF  +   + V +T++++G  ++G G++AL +
Sbjct: 550 RCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALAL 609

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              M ++GL PD VTFL  ++ CN+SG+V EG  ++ SM S +GI A  QH+ C+ D+L 
Sbjct: 610 FNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDS-FGISATPQHHCCVADLLA 668

Query: 566 RAGILDKAEELLQQTPGGGD-CMMWSSLLRSCRVHGNEIIGRRVANILMELEP-VDFAVY 623
           +AG +++A E ++     G+   +W SLL SC+  G + + + V   L+++E     A Y
Sbjct: 669 KAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGY 728

Query: 624 SQ-VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           S  +S   +    +  +  +R+   AR L ++ G S I+V + 
Sbjct: 729 SVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNA 771


>gi|242062166|ref|XP_002452372.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
 gi|241932203|gb|EES05348.1| hypothetical protein SORBIDRAFT_04g024590 [Sorghum bicolor]
          Length = 691

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 168/563 (29%), Positives = 304/563 (53%), Gaps = 13/563 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +++ +N  +  +   G ++ AK++FDE    R+ V++N +IS   K    + A+ ++ EM
Sbjct: 134 DVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREM 193

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  G + +   FS V++ C+ +  +  G Q+H  V+  G+  +++  + LVD+Y ++G  
Sbjct: 194 VWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDKDVFTANALVDMYSKLGDI 253

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F+++P  ++ +WN ++            L +  +MK  GV PN  +   +++ C
Sbjct: 254 EMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKAC 313

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +     + G+Q+H  +IK    D + FVA  LVD Y+  G L +A+K FDF+P  D+I W
Sbjct: 314 AGAGAFNLGRQIHGFMIKAD-ADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILW 372

Query: 282 NSIVSIYADYDLIFDALELFFRMQ-----LCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           N+++S  +      + L LF RM+     L   R ++ +    L   +    +   KQ+H
Sbjct: 373 NALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAV---LKSTASLEAICHTKQVH 429

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
               K+G    S HV + L D Y KC  ++ ++ VFE +    +    S+MT+L    + 
Sbjct: 430 ALAEKIGLLSDS-HVVNGLIDSYWKCGRLDYAIKVFEESCSDDIISSTSMMTALSQCDHG 488

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           +DA+++F  M+ +G+  D   LS+ L A +  ++   G  + +H   IK  F S++    
Sbjct: 489 EDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQG--KQVHAHLIKRQFTSDVFAGN 546

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+  Y++CG IE +   F  +P   VV +++++ G +++G G+ AL++   M+  G+ P
Sbjct: 547 ALVYTYAKCGSIEDADMAFSGLPEKGVVSWSAMIGGLAQHGHGKRALELFHRMLDEGVAP 606

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + +T   VL+ CNH+G+V + +  F SMK  +GID   +HY+CMID+LGRAG L  A EL
Sbjct: 607 NNITLTSVLSACNHAGLVDDAKKYFESMKEAFGIDRTEEHYACMIDILGRAGKLKDAMEL 666

Query: 577 LQQTPGGGDCMMWSSLLRSCRVH 599
           +   P   +  +W +LL + R++
Sbjct: 667 VNNMPFQANAAVWGALLGASRLN 689



 Score =  212 bits (540), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 148/558 (26%), Positives = 268/558 (48%), Gaps = 15/558 (2%)

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           ++A+ +FDE+P    V+++ L++       P+ AL+ +  M   G+  +      VL   
Sbjct: 54  SAARAVFDEIPDPCHVSWSSLVTAYSNNGMPRDALWAFRSMRGRGVPCNEYALPIVLKCA 113

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL-PERNLATW 179
            +  F   G Q+H   ++     ++++ + LV +Y   G    A  +FDE   ERN  +W
Sbjct: 114 PDVRF---GAQVHALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSW 170

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+ A+ +  R  + + ++ +M   G  PN   F  +V  C+     + G+Q+H  V++
Sbjct: 171 NGMISAYVKNDRCRDAVGVFREMVWSGERPNEFGFSCVVNACTGSRDWETGRQVHGMVVR 230

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ D ++F ANALVD YS  G +  A   F+ IP  DV+SWN++++    +     ALE
Sbjct: 231 TGY-DKDVFTANALVDMYSKLGDIEMAAVVFEKIPAADVVSWNALIAGCVTHGHDHRALE 289

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L  +M+     P++ +    L   +  G    G+QIHG++ K   D     V   L DMY
Sbjct: 290 LLLQMKPLGVVPNVFTLSSVLKACAGAGAFNLGRQIHGFMIKADADSDEF-VAVGLVDMY 348

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD--EVT 417
            K   ++ +  VF+  P R L   N+L++   H G   + + +F  M  EG+ LD    T
Sbjct: 349 AKDGFLDDARKVFDFMPRRDLILWNALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTT 408

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           L+  LK  S ++   +   + +H  A K G  S+  V   L+D+Y +CG ++ + +VFE+
Sbjct: 409 LAAVLK--STASLEAICHTKQVHALAEKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEE 466

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
             S +++  TS+M   S+   G +A+ +   M+++GL PD      +L  C      ++G
Sbjct: 467 SCSDDIISSTSMMTALSQCDHGEDAIKLFVQMLRKGLEPDSFVLSSLLNACASLSAYEQG 526

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           + V   +       +D    + ++    + G ++ A+      P  G  + WS+++    
Sbjct: 527 KQVHAHLIK-RQFTSDVFAGNALVYTYAKCGSIEDADMAFSGLPEKG-VVSWSAMIGGLA 584

Query: 598 VHGNEIIGRRVANILMEL 615
            HG+   G+R   +   +
Sbjct: 585 QHGH---GKRALELFHRM 599



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 143/539 (26%), Positives = 263/539 (48%), Gaps = 19/539 (3%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  +H  +L  G  L  Y  + L+  Y R      A  +FDE+P+    +W+ ++ A+  
Sbjct: 23  GAHLHSHLLKSGL-LASY-SNHLLSFYSRCRLPSAARAVFDEIPDPCHVSWSSLVTAYSN 80

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
              P + L  +  M+  GV  N  +   +++ C+  +    G Q+H+  +    +  ++F
Sbjct: 81  NGMPRDALWAFRSMRGRGVPCNEYALPIVLK-CAPDVRF--GAQVHALAVATRLIQ-DVF 136

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           V NALV  Y   G + EAK+ FD    + + +SWN ++S Y   D   DA+ +F  M   
Sbjct: 137 VTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISAYVKNDRCRDAVGVFREMVWS 196

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
            +RP+   F   +N  + + +   G+Q+HG V + G+D   V   +AL DMY K   IE 
Sbjct: 197 GERPNEFGFSCVVNACTGSRDWETGRQVHGMVVRTGYDK-DVFTANALVDMYSKLGDIEM 255

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  VFE  P   +   N+L+   +  G+   A+E+   M   G+  +  TLS+ LKA + 
Sbjct: 256 AAVVFEKIPAADVVSWNALIAGCVTHGHDHRALELLLQMKPLGVVPNVFTLSSVLKACAG 315

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           + + NLG  R +H   IK+  +S+  V+  L+D Y++ G ++ + +VF+ +P  +++ + 
Sbjct: 316 AGAFNLG--RQIHGFMIKADADSDEFVAVGLVDMYAKDGFLDDARKVFDFMPRRDLILWN 373

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPD--KVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           ++++G S +G   E L +   M + GL  D  + T   VL        +   + V +++ 
Sbjct: 374 ALISGCSHDGRHGEVLSLFHRMRKEGLDLDVNRTTLAAVLKSTASLEAICHTKQV-HALA 432

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV--HGNEI 603
              G+ +D    + +ID   + G LD A ++ +++    D +  +S++ +     HG + 
Sbjct: 433 EKIGLLSDSHVVNGLIDSYWKCGRLDYAIKVFEESC-SDDIISSTSMMTALSQCDHGEDA 491

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI--GHSLI 660
           I   V  +   LEP  F V S + N  + +  +E   Q+    + R+ T D+  G++L+
Sbjct: 492 IKLFVQMLRKGLEPDSF-VLSSLLNACASLSAYEQGKQVHAHLIKRQFTSDVFAGNALV 549



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 48/174 (27%), Positives = 84/174 (48%), Gaps = 12/174 (6%)

Query: 428 SASANLGSCRLL------HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           SA A  G+ R L      H   +KSG  ++   S  L+  YSRC     +  VF++IP P
Sbjct: 9   SALARFGASRSLLAGAHLHSHLLKSGLLASY--SNHLLSFYSRCRLPSAARAVFDEIPDP 66

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
             V ++S++  YS NGM R+AL     M  RG +P     L ++  C     V+ G  V 
Sbjct: 67  CHVSWSSLVTAYSNNGMPRDALWAFRSMRGRG-VPCNEYALPIVLKCAPD--VRFGAQV- 122

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           +++     +  D    + ++ M G  G++D+A+ +  +  G  + + W+ ++ +
Sbjct: 123 HALAVATRLIQDVFVTNALVAMYGGFGMVDEAKRIFDEPGGERNAVSWNGMISA 176


>gi|357168001|ref|XP_003581434.1| PREDICTED: pentatricopeptide repeat-containing protein At3g53360,
           mitochondrial-like [Brachypodium distachyon]
          Length = 757

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/633 (28%), Positives = 324/633 (51%), Gaps = 14/633 (2%)

Query: 38  PNPQL--NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL 95
           P+P L  N   +N  I  + +     SA+ +FDEMPA++ V++  +I+   + R    AL
Sbjct: 68  PDPNLVRNTVLNNHLITMYGRCAAPESARLVFDEMPAKNPVSWASVIAAHAQNRRSTDAL 127

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            L+  M+  G         S +  C+  G    G Q+H + +    G +L + + LV +Y
Sbjct: 128 GLFSSMLRSGTAPDQFALGSTVRACAELGDIGVGRQVHAQAMKSENGSDLIVQNALVTMY 187

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSF 214
            + G       LF  + E++  +W  ++  F +     E L+++ +M AEG+  PN   F
Sbjct: 188 SKSGLVADGFLLFGRMREKDPISWGSIIAGFAQQGCEMEALQIFREMVAEGMHHPNEFHF 247

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             +   C +   L+ G+Q+HS  +K   +D N +   +L D Y+ C  L  AK+ F  I 
Sbjct: 248 GSVFSACGVLGSLEYGEQIHSLSVKYR-LDHNSYAGCSLSDMYARCKKLESAKRVFYGID 306

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             D++SWNSI++  +   L+ +A+ L   M+    RP   +    L        +  G+ 
Sbjct: 307 APDLVSWNSIINACSVEGLLSEAMVLLSEMRGSGLRPDGITVRGLLCACVGCDAIQHGRL 366

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H Y+ KLG D G V V ++L  MY +C    S++ VF     R +   NS++T+ +   
Sbjct: 367 MHSYLVKLGLD-GDVSVCNSLLSMYARCMDFSSAMDVFHETRDRDVVTWNSILTACVQHQ 425

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESN 451
           +++   ++F  +      LD ++L+  L     SASA LG     + +H C  K G  ++
Sbjct: 426 HLEVVFKLFNLLQRSLPSLDRISLNNVL-----SASAELGYFEMVKQVHTCTFKVGLVND 480

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
             +S  L+D Y++CG ++ + ++FE +  + +V  ++S++ GY+++G  R+ALD+   M 
Sbjct: 481 TMLSNGLIDTYAKCGSLDDAVKLFEMMGTNSDVFSWSSLIVGYAQSGYPRKALDLFARMR 540

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G+ P+ VTF+ VL  C+  G+V EG   ++ M+  +G+   R+H SC+ID+L RAG L
Sbjct: 541 NLGVRPNHVTFVGVLTACSRVGLVDEGCYYYSIMEPEHGVLPTREHCSCVIDLLARAGRL 600

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +A + + Q P   D +MW +LL   + H +  +GRR A  ++ ++P   A Y  + N Y
Sbjct: 601 TEAAKFVDQMPFEPDIVMWKTLLAGSKTHNDVEMGRRAAEGILNIDPSHSAAYVLLCNIY 660

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           S  G++    ++++   +  + +  G S +++ 
Sbjct: 661 SASGDWNEFARLKKAMRSSGVKKSPGKSWVKLK 693


>gi|449491114|ref|XP_004158804.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At1g15510, chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 181/621 (29%), Positives = 326/621 (52%), Gaps = 18/621 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  FV+ G+L  A  +F +M  RD+ ++N+L+ G  K     +AL LY  M+   I+
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TF SVL  C+       G +IH  V+  GF  ++ +G+ L+ +Y++ G    A  L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD++P+R+  +WN M+  + E     E L +++ M+   V+P+ ++   +   C    LL
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE---LL 312

Query: 228 DE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           D    G+ +H +V+K  +   +I + N+L+  YS+ G L EA+  F  +   DV+SW ++
Sbjct: 313 DNERLGRGVHGYVVKSEFGG-DISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++    + L F A+E +  M+L    P   + V  L+  +  G++  G ++H    K G 
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               V V ++L DMY KC  +++++ VF +  G+++    SL+  L  +    +A+  F 
Sbjct: 432 V-SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDA 461
            M  E +  + VTL + L     SA A +G+    + +H  A+++G   +  +  +++D 
Sbjct: 491 QM-KESMKPNSVTLISVL-----SACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y RCG    +   F      +V  +  ++ GY++ G  + A+++ + M++  + PD++TF
Sbjct: 545 YVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L  C+ SGMV EG   FN MK+ Y +  + +HY+C++D+LGRAG LD A + +Q  P
Sbjct: 604 ISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMP 663

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  +W +LL +CR+H N  +G   A  + E +      Y  + N Y+  G ++   +
Sbjct: 664 IRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSK 723

Query: 642 IRETALARKLTRDIGHSLIEV 662
           +R     R L+ D G S +E+
Sbjct: 724 VRSLMRERGLSADPGCSWVEI 744



 Score =  205 bits (521), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 147/526 (27%), Positives = 262/526 (49%), Gaps = 10/526 (1%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           +QA+   + M+   I+     + ++L +C       EG +++  V S    L + +G+ L
Sbjct: 79  EQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNAL 138

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           + +++R G  + A  +F ++ ER++ +WN+++  + +    DE L +Y++M    + PN 
Sbjct: 139 LSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNV 198

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            +F  +++ C+    +  GK++H+HVI+ G+ + ++ V NAL+  Y  CG +  A+  FD
Sbjct: 199 YTFPSVLKTCAGVSDIARGKEIHAHVIRFGF-ESDVDVGNALITMYVKCGDISNARMLFD 257

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  D ISWN+++S Y +     + LELF  M+     P + +     +      N   
Sbjct: 258 KMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL 317

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+ +HGYV K  F  G + + ++L  MY     +E +  VF     + +    +++ SL+
Sbjct: 318 GRGVHGYVVKSEFG-GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
                  AVE +  M  EGI  DE+TL + L A +     +LG    LH  AIK+G  S+
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI--RLHEIAIKTGLVSH 434

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + VS SL+D YS+C  ++ + +VF  I   NVV +TS++ G   N    EAL     M +
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-K 493

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             + P+ VT + VL+ C   G +  G+ +  +++++  G D    +   ++DM  R G  
Sbjct: 494 ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCG-- 549

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
            K   L Q      D   W+ LL      G   +   + + ++ELE
Sbjct: 550 RKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 187/402 (46%), Gaps = 19/402 (4%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P + T+TT+A  C  +        +  Y  +     +I  +N  I  +   G L  A+ +
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETV 356

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  M ++D+V++  +I+     + P +A+  Y  M   GI     T  SVLS C+  G  
Sbjct: 357 FSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHL 416

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             GI++H   +  G   ++ + + L+D+Y +      AL++F  +  +N+ +W  ++   
Sbjct: 417 DLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGL 476

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVDV 245
              +R  E L  + +MK E ++PN ++   ++  C+ IG L+  GK++H+H ++ G V  
Sbjct: 477 RINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALM-RGKEIHAHALRTG-VGF 533

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           + F+ NA++D Y  CG  + A   F+     DV +WN +++ YA       A+ELF +M 
Sbjct: 534 DGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKML 592

Query: 306 LCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
                P   +F+  L   S++G V     YF    + Y       H      + + D+ G
Sbjct: 593 ELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKH-----YACVVDILG 647

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           +   ++ +    +  P R      ++  +LL++  I   VE+
Sbjct: 648 RAGQLDDAYDFIQDMPIRPDA---AIWGALLNACRIHRNVEL 686


>gi|125591533|gb|EAZ31883.1| hypothetical protein OsJ_16048 [Oryza sativa Japonica Group]
          Length = 674

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/643 (27%), Positives = 335/643 (52%), Gaps = 17/643 (2%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L D+    N  LN+Y+S+       +   ++  ++LFD MP R++V++N L     K   
Sbjct: 8   LPDTAVLRNSLLNLYASSVRY----REARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGR 63

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIG 148
           P++AL L+  M+  G + +  +F ++    + A   +   Q++  ++  G     +L++ 
Sbjct: 64  PQEALELFVRMLEDGFRPTPVSFVNIFP-AAVADDPSWPFQLYGLLVKYGVEYINDLFVV 122

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGV 207
           S  +D++   G    A  +FD   ++N   WN M+  + +  +  E + +++K + +  V
Sbjct: 123 SSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREV 182

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
             + ++F   +   S    +  G+QLH ++IK     + + + NALV  YS CG++  A 
Sbjct: 183 PLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAF 242

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
             FD +P  D+++WN++V+ +   D   + L L + MQ         +    L+ +S TG
Sbjct: 243 DLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTG 302

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG--RSLECCNS 385
           ++  GKQ HGY+ + G +   +  +S L DMY K   +E +  VF+S     R     N+
Sbjct: 303 DLQIGKQAHGYLIRHGIEGEGL--ESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNA 360

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++     SG  + A+ +F  M++ G+    VTL++ L A        + S + +HC A++
Sbjct: 361 MIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACD-PVGGGVYSGKQIHCFAVR 419

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
              ++N+ V  +L+D YS+CG I  +  VF  +   + V +T++++G  ++G G++AL +
Sbjct: 420 RCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALAL 479

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              M ++GL PD VTFL  ++ CN+SG+V EG  ++ SM S +GI A  QH+ C+ D+L 
Sbjct: 480 FNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDS-FGISATPQHHCCVADLLA 538

Query: 566 RAGILDKAEELLQQTPGGGD-CMMWSSLLRSCRVHGNEIIGRRVANILMELEP-VDFAVY 623
           +AG +++A E ++     G+   +W SLL SC+  G + + + V   L+++E     A Y
Sbjct: 539 KAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGY 598

Query: 624 SQ-VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           S  +S   +    +  +  +R+   AR L ++ G S I+V + 
Sbjct: 599 SVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNA 641


>gi|449464496|ref|XP_004149965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
 gi|449497665|ref|XP_004160467.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Cucumis sativus]
          Length = 938

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 184/629 (29%), Positives = 325/629 (51%), Gaps = 18/629 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +  + ++N  I  F   G +N A  +F+EM  RD +++N +IS   +    +++   +  
Sbjct: 192 ETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHW 251

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M     + + +T S +LS+C +  +   G  +H   +  G   N+ + + L+ +Y   G 
Sbjct: 252 MRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLESNICLCNTLLSVYSDAGR 311

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
           S  A  +F  +PER+L +WN ML  + +  R    L+++ +M     E N ++F   +  
Sbjct: 312 SKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAA 371

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C        GK LH  V+ LG  D  + + N L+ FY  C  + EAKK F  +P  D ++
Sbjct: 372 CLDPEFFTNGKILHGFVVVLGLQD-ELIIGNTLITFYGKCHKMAEAKKVFQRMPKLDKVT 430

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN-------VYFGK 333
           WN+++  +A+   + +A+  F  M     R    S V+++   +  G+       + +G 
Sbjct: 431 WNALIGGFANNAELNEAVAAFKLM-----REGSTSGVDYITIVNILGSCLTHEDLIKYGI 485

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            IH +    GFD    HVQS+L  MY KC  + SS  +F+    ++    N+++ +    
Sbjct: 486 PIHAHTVVTGFDLDQ-HVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARY 544

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNI 452
           G  ++A+++   M   GI  D+   ST   ALSV+A  A L   + LH   IK GFE + 
Sbjct: 545 GFGEEALKLVVRMRSAGIEFDQFNFST---ALSVAADLAMLEEGQQLHGSTIKLGFELDH 601

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            +  + MD Y +CG ++ + ++  +    + + + ++++  +R+G   +A +    M++ 
Sbjct: 602 FIINAAMDMYGKCGELDDALRILPQPTDRSRLSWNTLISISARHGQFHKAKETFHDMLKL 661

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ P+ V+F+C+L+ C+H G+V EG   + SM SVYGI    +H  CMID+LGR+G L +
Sbjct: 662 GVKPNHVSFVCLLSACSHGGLVDEGLAYYASMTSVYGIQPGIEHCVCMIDLLGRSGRLVE 721

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           AE  + + P   + ++W SLL SCR++ N  +GR+ A  L+EL+P D + Y   SN ++ 
Sbjct: 722 AEAFITEMPIPPNDLVWRSLLASCRIYRNLDLGRKAAKHLLELDPSDDSAYVLYSNVFAT 781

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIE 661
           IG +E    +R    A K+ +   HS ++
Sbjct: 782 IGRWEDVEDVRGQMGAHKIQKKPAHSWVK 810



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 126/529 (23%), Positives = 252/529 (47%), Gaps = 8/529 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +N A+ +FD M  R+  ++N ++SG  +     +A+  + ++   GIK S    
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 114 SSVLSVCSNAGFYT-EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +S+++ C+ +     EG Q H   +  G   ++++G+  V  Y   G    A  +F+E+P
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +RN+ +W  ++ ++ +     EV+  Y +M+ EG+  N  +   ++  C   M +  G Q
Sbjct: 122 DRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLMDIILGHQ 181

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           L  H +K G ++  +  AN+L+  +  CG + EA   F+ +   D ISWNSI+S  A   
Sbjct: 182 LLGHALKFG-LETKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISANAQNT 240

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L  ++   F  M+L  +  +  +    L+       + +GK +HG   K G +  ++ + 
Sbjct: 241 LHEESFRYFHWMRLVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGLE-SNICLC 299

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           + L  +Y      + +  +F   P R L   NS++   +  G    A+++F  M+     
Sbjct: 300 NTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAEMLWMKKE 359

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           ++ VT ++ L A         G  ++LH   +  G +  + +  +L+  Y +C  +  + 
Sbjct: 360 INYVTFTSALAACLDPEFFTNG--KILHGFVVVLGLQDELIIGNTLITFYGKCHKMAEAK 417

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGC-NH 530
           +VF+++P  + V + +++ G++ N    EA+   ++M +      D +T + +L  C  H
Sbjct: 418 KVFQRMPKLDKVTWNALIGGFANNAELNEAVAAFKLMREGSTSGVDYITIVNILGSCLTH 477

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
             ++K G +  ++   V G D D+   S +I M  + G L  +  +  Q
Sbjct: 478 EDLIKYG-IPIHAHTVVTGFDLDQHVQSSLITMYAKCGDLHSSSYIFDQ 525



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 142/573 (24%), Positives = 259/573 (45%), Gaps = 32/573 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++     +  +   G +++A+K+F+EMP R++V++  L+         K+ +  Y  M 
Sbjct: 93  DVFVGTSFVHFYASYGIVSNAQKMFNEMPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMR 152

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTE---GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
             GI  + +  + V+S C   GF  +   G Q+    L  G    +   + L+ ++   G
Sbjct: 153 HEGICCNENNIALVISSC---GFLMDIILGHQLLGHALKFGLETKVSAANSLIFMFGGCG 209

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +F+E+ ER+  +WN ++ A  + +  +E  R ++ M+    E N  +   ++ 
Sbjct: 210 DINEACSIFNEMNERDTISWNSIISANAQNTLHEESFRYFHWMRLVHEEINYTTLSILLS 269

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C     L  GK +H   +K G ++ NI + N L+  YS  G   +A+  F  +P  D+I
Sbjct: 270 ICGSVDYLKWGKGVHGLAVKYG-LESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLI 328

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNS+++ Y        AL++F  M   +K  +  +F   L           GK +HG+V
Sbjct: 329 SWNSMLACYVQDGRCLCALKVFAEMLWMKKEINYVTFTSALAACLDPEFFTNGKILHGFV 388

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             LG     + + + L   YGKC+ +  +  VF+  P       N+L+    ++  + +A
Sbjct: 389 VVLGLQDELI-IGNTLITFYGKCHKMAEAKKVFQRMPKLDKVTWNALIGGFANNAELNEA 447

Query: 400 VEMFGFMVDEGI-GLDEVTLSTTLKALSVSASANLGSCRL----------LHCCAIKSGF 448
           V  F  M +    G+D +T+              LGSC            +H   + +GF
Sbjct: 448 VAAFKLMREGSTSGVDYITIVNI-----------LGSCLTHEDLIKYGIPIHAHTVVTGF 496

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           + +  V  SL+  Y++CG +  S  +F+++       + +I+   +R G G EAL ++  
Sbjct: 497 DLDQHVQSSLITMYAKCGDLHSSSYIFDQLVFKTSSVWNAIIAANARYGFGEEALKLVVR 556

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M   G+  D+  F   L+      M++EGQ +  S   + G + D    +  +DM G+ G
Sbjct: 557 MRSAGIEFDQFNFSTALSVAADLAMLEEGQQLHGSTIKL-GFELDHFIINAAMDMYGKCG 615

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            LD A  +L Q P     + W++L+     HG 
Sbjct: 616 ELDDALRILPQ-PTDRSRLSWNTLISISARHGQ 647



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 106/445 (23%), Positives = 212/445 (47%), Gaps = 15/445 (3%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A  +FD + ERN A+WN M+  +  +    E +  +  +   G++P+G  
Sbjct: 1   MYSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFM 60

Query: 214 FCYMVRGCSIGMLL-DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
              +V  C+   ++  EG Q H   IK G +  ++FV  + V FY++ G +  A+K F+ 
Sbjct: 61  IASLVTACNKSSIMAKEGFQFHGFAIKCGLI-YDVFVGTSFVHFYASYGIVSNAQKMFNE 119

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQ---LCRKRPSIRSFVEFLNFASRTGNV 329
           +P  +V+SW S++  Y+D     + +  + RM+   +C    +I   +    F     ++
Sbjct: 120 MPDRNVVSWTSLMVSYSDNGSKKEVINTYKRMRHEGICCNENNIALVISSCGFLM---DI 176

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
             G Q+ G+  K G +   V   ++L  M+G C  I  + ++F     R     NS++++
Sbjct: 177 ILGHQLLGHALKFGLE-TKVSAANSLIFMFGGCGDINEACSIFNEMNERDTISWNSIISA 235

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN-LGSCRLLHCCAIKSGF 448
              +   +++   F +M    +  +E+  +T    LS+  S + L   + +H  A+K G 
Sbjct: 236 NAQNTLHEESFRYFHWMR---LVHEEINYTTLSILLSICGSVDYLKWGKGVHGLAVKYGL 292

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           ESNI +  +L+  YS  G  + +  +F ++P  +++ + S++  Y ++G    AL +   
Sbjct: 293 ESNICLCNTLLSVYSDAGRSKDAELIFRRMPERDLISWNSMLACYVQDGRCLCALKVFAE 352

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M+      + VTF   LA C        G+ + +    V G+  +    + +I   G+  
Sbjct: 353 MLWMKKEINYVTFTSALAACLDPEFFTNGK-ILHGFVVVLGLQDELIIGNTLITFYGKCH 411

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLL 593
            + +A+++ Q+ P   D + W++L+
Sbjct: 412 KMAEAKKVFQRMP-KLDKVTWNALI 435



 Score = 46.2 bits (108), Expect = 0.063,   Method: Compositional matrix adjust.
 Identities = 31/141 (21%), Positives = 63/141 (44%), Gaps = 1/141 (0%)

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+ G I  +  VF+++   N   +  +M+GY R G   EA+     +   G+ P     
Sbjct: 2   YSKFGRINYAQLVFDRMSERNEASWNHMMSGYVRVGSYVEAVLFFRDICGIGIKPSGFMI 61

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
             ++  CN S ++ +    F+      G+  D    +  +      GI+  A+++  + P
Sbjct: 62  ASLVTACNKSSIMAKEGFQFHGFAIKCGLIYDVFVGTSFVHFYASYGIVSNAQKMFNEMP 121

Query: 582 GGGDCMMWSSLLRSCRVHGNE 602
              + + W+SL+ S   +G++
Sbjct: 122 -DRNVVSWTSLMVSYSDNGSK 141


>gi|449436591|ref|XP_004136076.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Cucumis sativus]
          Length = 878

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 181/621 (29%), Positives = 326/621 (52%), Gaps = 18/621 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  FV+ G+L  A  +F +M  RD+ ++N+L+ G  K     +AL LY  M+   I+
Sbjct: 136 NALLSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIR 195

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TF SVL  C+       G +IH  V+  GF  ++ +G+ L+ +Y++ G    A  L
Sbjct: 196 PNVYTFPSVLKTCAGVSDIARGKEIHAHVIRFGFESDVDVGNALITMYVKCGDISNARML 255

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD++P+R+  +WN M+  + E     E L +++ M+   V+P+ ++   +   C    LL
Sbjct: 256 FDKMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACE---LL 312

Query: 228 DE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           D    G+ +H +V+K  +   +I + N+L+  YS+ G L EA+  F  +   DV+SW ++
Sbjct: 313 DNERLGRGVHGYVVKSEFGG-DISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAM 371

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++    + L F A+E +  M+L    P   + V  L+  +  G++  G ++H    K G 
Sbjct: 372 IASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGIRLHEIAIKTGL 431

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               V V ++L DMY KC  +++++ VF +  G+++    SL+  L  +    +A+  F 
Sbjct: 432 V-SHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFR 490

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDA 461
            M  E +  + VTL + L     SA A +G+    + +H  A+++G   +  +  +++D 
Sbjct: 491 QM-KESMKPNSVTLISVL-----SACARIGALMRGKEIHAHALRTGVGFDGFLPNAILDM 544

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y RCG    +   F      +V  +  ++ GY++ G  + A+++ + M++  + PD++TF
Sbjct: 545 YVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELEIHPDEITF 603

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + +L  C+ SGMV EG   FN MK+ Y +  + +HY+C++D+LGRAG LD A + +Q  P
Sbjct: 604 ISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKHYACVVDILGRAGQLDDAYDFIQDMP 663

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  +W +LL +CR+H N  +G   A  + E +      Y  + N Y+  G ++   +
Sbjct: 664 IRPDAAIWGALLNACRIHRNVELGEIAAKRVFEKDNKSVGYYILLCNLYAGCGNWDKVSK 723

Query: 642 IRETALARKLTRDIGHSLIEV 662
           +R     R L+ D G S +E+
Sbjct: 724 VRSLMRERGLSADPGCSWVEI 744



 Score =  204 bits (520), Expect = 9e-50,   Method: Compositional matrix adjust.
 Identities = 147/526 (27%), Positives = 262/526 (49%), Gaps = 10/526 (1%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           +QA+   + M+   I+     + ++L +C       EG +++  V S    L + +G+ L
Sbjct: 79  EQAMKRLESMLELRIEVEEDAYIALLRLCEWRRAPDEGSRVYELVSSSKSCLCVRLGNAL 138

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           + +++R G  + A  +F ++ ER++ +WN+++  + +    DE L +Y++M    + PN 
Sbjct: 139 LSMFVRFGNLLDAWYVFGKMSERDVFSWNVLVGGYAKAGCFDEALNLYHRMLWAEIRPNV 198

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            +F  +++ C+    +  GK++H+HVI+ G+ + ++ V NAL+  Y  CG +  A+  FD
Sbjct: 199 YTFPSVLKTCAGVSDIARGKEIHAHVIRFGF-ESDVDVGNALITMYVKCGDISNARMLFD 257

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  D ISWN+++S Y +     + LELF  M+     P + +     +      N   
Sbjct: 258 KMPKRDRISWNAMISGYFENGGGLEGLELFSMMRELSVDPDLITMTTVASACELLDNERL 317

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+ +HGYV K  F  G + + ++L  MY     +E +  VF     + +    +++ SL+
Sbjct: 318 GRGVHGYVVKSEFG-GDISMNNSLIQMYSSLGRLEEAETVFSRMESKDVVSWTAMIASLV 376

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
                  AVE +  M  EGI  DE+TL + L A +     +LG    LH  AIK+G  S+
Sbjct: 377 SHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHLDLGI--RLHEIAIKTGLVSH 434

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + VS SL+D YS+C  ++ + +VF  I   NVV +TS++ G   N    EAL     M +
Sbjct: 435 VIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGLRINNRSFEALLFFRQM-K 493

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             + P+ VT + VL+ C   G +  G+ +  +++++  G D    +   ++DM  R G  
Sbjct: 494 ESMKPNSVTLISVLSACARIGALMRGKEIHAHALRTGVGFDGFLPN--AILDMYVRCG-- 549

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
            K   L Q      D   W+ LL      G   +   + + ++ELE
Sbjct: 550 RKVPALNQFNSQKKDVTAWNILLTGYAQQGQAKLAVELFDKMLELE 595



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 187/402 (46%), Gaps = 19/402 (4%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P + T+TT+A  C  +        +  Y  +     +I  +N  I  +   G L  A+ +
Sbjct: 297 PDLITMTTVASACELLDNERLGRGVHGYVVKSEFGGDISMNNSLIQMYSSLGRLEEAETV 356

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  M ++D+V++  +I+     + P +A+  Y  M   GI     T  SVLS C+  G  
Sbjct: 357 FSRMESKDVVSWTAMIASLVSHKLPFKAVETYKMMELEGILPDEITLVSVLSACACIGHL 416

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             GI++H   +  G   ++ + + L+D+Y +      AL++F  +  +N+ +W  ++   
Sbjct: 417 DLGIRLHEIAIKTGLVSHVIVSNSLIDMYSKCKCVDNALEVFRNISGKNVVSWTSLILGL 476

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVDV 245
              +R  E L  + +MK E ++PN ++   ++  C+ IG L+  GK++H+H ++ G V  
Sbjct: 477 RINNRSFEALLFFRQMK-ESMKPNSVTLISVLSACARIGALM-RGKEIHAHALRTG-VGF 533

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           + F+ NA++D Y  CG  + A   F+     DV +WN +++ YA       A+ELF +M 
Sbjct: 534 DGFLPNAILDMYVRCGRKVPALNQFNS-QKKDVTAWNILLTGYAQQGQAKLAVELFDKML 592

Query: 306 LCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
                P   +F+  L   S++G V     YF    + Y       H      + + D+ G
Sbjct: 593 ELEIHPDEITFISLLCACSKSGMVTEGLEYFNIMKNKYNLTPNLKH-----YACVVDILG 647

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           +   ++ +    +  P R      ++  +LL++  I   VE+
Sbjct: 648 RAGQLDDAYDFIQDMPIRPDA---AIWGALLNACRIHRNVEL 686


>gi|115460348|ref|NP_001053774.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|38344148|emb|CAE01824.2| OSJNBa0041A02.15 [Oryza sativa Japonica Group]
 gi|113565345|dbj|BAF15688.1| Os04g0602600 [Oryza sativa Japonica Group]
 gi|125549608|gb|EAY95430.1| hypothetical protein OsI_17272 [Oryza sativa Indica Group]
          Length = 804

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 180/643 (27%), Positives = 335/643 (52%), Gaps = 17/643 (2%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L D+    N  LN+Y+S+       +   ++  ++LFD MP R++V++N L     K   
Sbjct: 138 LPDTAVLRNSLLNLYASSVRY----REARVDVVRRLFDAMPKRNVVSWNTLFGWYVKTGR 193

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIG 148
           P++AL L+  M+  G + +  +F ++    + A   +   Q++  ++  G     +L++ 
Sbjct: 194 PQEALELFVRMLEDGFRPTPVSFVNIFP-AAVADDPSWPFQLYGLLVKYGVEYINDLFVV 252

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGV 207
           S  +D++   G    A  +FD   ++N   WN M+  + +  +  E + +++K + +  V
Sbjct: 253 SSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGSREV 312

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
             + ++F   +   S    +  G+QLH ++IK     + + + NALV  YS CG++  A 
Sbjct: 313 PLDVVTFLSALTAASQSQDVSLGQQLHGYLIKGMHRTLPVILGNALVVMYSRCGNVQTAF 372

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
             FD +P  D+++WN++V+ +   D   + L L + MQ         +    L+ +S TG
Sbjct: 373 DLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLSASSNTG 432

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES--APGRSLECCNS 385
           ++  GKQ HGY+ + G +   +  +S L DMY K   +E +  VF+S     R     N+
Sbjct: 433 DLQIGKQAHGYLIRHGIEGEGL--ESYLIDMYAKSGRVEMAQRVFDSFKNAKRDEVTWNA 490

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++     SG  + A+ +F  M++ G+    VTL++ L A        + S + +HC A++
Sbjct: 491 MIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACD-PVGGGVYSGKQIHCFAVR 549

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
              ++N+ V  +L+D YS+CG I  +  VF  +   + V +T++++G  ++G G++AL +
Sbjct: 550 RCLDTNVFVGTALIDMYSKCGEITTAENVFGGMTGKSTVTYTTMISGLGQHGFGKKALAL 609

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              M ++GL PD VTFL  ++ CN+SG+V EG  ++ SM S +GI A  QH+ C+ D+L 
Sbjct: 610 FNSMQEKGLKPDAVTFLSAISACNYSGLVDEGLALYRSMDS-FGISATPQHHCCVADLLA 668

Query: 566 RAGILDKAEELLQQTPGGGD-CMMWSSLLRSCRVHGNEIIGRRVANILMELEP-VDFAVY 623
           +AG +++A E ++     G+   +W SLL SC+  G + + + V   L+++E     A Y
Sbjct: 669 KAGRVEEAYEFIEGLGEEGNFVAIWGSLLASCKAQGKQELAKLVTKKLLDIEKQYGHAGY 728

Query: 624 SQ-VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           S  +S   +    +  +  +R+   AR L ++ G S I+V + 
Sbjct: 729 SVLLSQVLAAESNWNSADSLRKEMRARGLKKEAGSSWIKVQNA 771



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 116/475 (24%), Positives = 231/475 (48%), Gaps = 36/475 (7%)

Query: 180 NLMLRAFCELSRPDEVLRMY---NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
           N +L A+   + P+E LR+Y   N      V  +  ++   +  C+    L  G+ +H+H
Sbjct: 71  NALLIAYAARALPEEALRLYALLNHAARPPVRSDHYTYSAALTACARSRRLRLGRSVHAH 130

Query: 237 VIKLGW-VDVNIFVANALVDFYSACGSLIEA-----KKSFDFIPVDDVISWNSIVSIYAD 290
           +++    +     + N+L++ Y++     EA     ++ FD +P  +V+SWN++   Y  
Sbjct: 131 MLRRARSLPDTAVLRNSLLNLYASSVRYREARVDVVRRLFDAMPKRNVVSWNTLFGWYVK 190

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH-GSV 349
                +ALELF RM     RP+  SFV     A+   +  +  Q++G + K G ++   +
Sbjct: 191 TGRPQEALELFVRMLEDGFRPTPVSFVNIFP-AAVADDPSWPFQLYGLLVKYGVEYINDL 249

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-D 408
            V S+  DM+ +   ++S+  VF+ A  ++ E  N+++T  + +G   +A+++F  ++  
Sbjct: 250 FVVSSAIDMFSEFGDVQSARRVFDRAAKKNTEVWNTMITGYVQNGQFSEAIDLFSKILGS 309

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV--SCSLMDAYSRCG 466
             + LD VT  + L A S S   +LG  + LH   IK G    + V    +L+  YSRCG
Sbjct: 310 REVPLDVVTFLSALTAASQSQDVSLG--QQLHGYLIK-GMHRTLPVILGNALVVMYSRCG 366

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +++ +  +F+++P  ++V + +++  + +N    E L ++  M + G   D VT   VL+
Sbjct: 367 NVQTAFDLFDRLPEKDIVTWNTMVTAFIQNDFDLEGLLLVYEMQKSGFAADSVTLTAVLS 426

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG-D 585
             +++G ++ G+     +   +GI+ +    S +IDM  ++G ++ A+ +         D
Sbjct: 427 ASSNTGDLQIGKQAHGYLIR-HGIEGEGLE-SYLIDMYAKSGRVEMAQRVFDSFKNAKRD 484

Query: 586 CMMWSSLL----------------RSCRVHGNEIIGRRVANILMELEPVDFAVYS 624
            + W++++                R+    G E     +A++L   +PV   VYS
Sbjct: 485 EVTWNAMIAGYTQSGQPEKAILVFRAMLEAGLEPTSVTLASVLPACDPVGGGVYS 539


>gi|357521733|ref|XP_003631155.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355525177|gb|AET05631.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 785

 Score =  286 bits (733), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 170/608 (27%), Positives = 321/608 (52%), Gaps = 15/608 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLI---SGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           A+ +FD++P   +V +N++I   +  G F   +Q++YLY  M+  G+  +  TF  +L  
Sbjct: 60  ARHVFDQIPKPSVVLWNMMIRTYAWSGPF---QQSIYLYLHMLQLGVTPTNFTFPFLLKA 116

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLA 177
           CS+      G  IH     LG  ++LY+ + L+ +Y + G   +A  LF+ +   +R++ 
Sbjct: 117 CSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGHLYQAQTLFNSISHQDRDIV 176

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            WN M+ AF   +   + +    +M+  GV PN  +   ++        L +GK +H++ 
Sbjct: 177 AWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSILPTIGQANALHQGKAIHAYY 236

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           I+  + D N+ +  AL+D Y+ C  L  A+K F+ +   + + W++++  Y  +D I DA
Sbjct: 237 IRNFFFD-NVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDVCWSAMIGGYVLHDSISDA 295

Query: 298 LELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           L L+  M LC     P+  +    L   ++  ++  GK++H ++ K G D  +  V ++L
Sbjct: 296 LALYDDM-LCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTT-VGNSL 353

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
             MY KC +++++V   +    +     +++++  + +G  + A+ +F  M   GI    
Sbjct: 354 ISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYL 413

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T+   L A S  A+   G+C   H   +  GF ++ ++  +++D YS+CG I +S ++F
Sbjct: 414 ETMIALLPACSHLAALQHGTC--CHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIF 471

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           +++ + +++ + +++ GY  +G+  EAL + + +   GL PD VT + VL+ C+HSG+V 
Sbjct: 472 DRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVT 531

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG+  F+SM   + I     HY CM+D+L RAG LD+A   +Q+ P   +  +W +LL +
Sbjct: 532 EGKYWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLAA 591

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           CR H N  +G +V+  +  L P     +  +SN YS +G ++ +  IR         +  
Sbjct: 592 CRTHKNIEMGEQVSKKIQLLGPEGTGNFVLMSNIYSSVGRWDDAAYIRSIQRHHGYKKSP 651

Query: 656 GHSLIEVN 663
           G S +E++
Sbjct: 652 GCSWVEIS 659



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 120/495 (24%), Positives = 224/495 (45%), Gaps = 8/495 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T   L   C+S+  L    L+ ++       +++Y S   +  + K GH
Sbjct: 98  MLQLGVTPTNFTFPFLLKACSSLQALQLGRLIHTHAHILGLSMDLYVSTALLHMYAKCGH 157

Query: 60  LNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           L  A+ LF+ +    RD+V +N +I+         Q ++   +M   G+  ++ST  S+L
Sbjct: 158 LYQAQTLFNSISHQDRDIVAWNAMIAAFSFHALHAQTIHSVAQMQQAGVTPNSSTLVSIL 217

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
                A    +G  IH   +   F  N+ + + L+D+Y +      A  +F+ + ++N  
Sbjct: 218 PTIGQANALHQGKAIHAYYIRNFFFDNVVLQTALLDMYAKCHLLFYARKIFNTVNKKNDV 277

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            W+ M+  +       + L +Y+ M    G+ P   +   M+R C+    L  GK+LH H
Sbjct: 278 CWSAMIGGYVLHDSISDALALYDDMLCIYGLNPTPATLATMLRACAQLTDLKRGKKLHCH 337

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           +IK G +D++  V N+L+  Y+ CG +  A    D +   D +S+++I+S          
Sbjct: 338 MIKSG-MDLDTTVGNSLISMYAKCGIMDNAVGFLDEMIAKDTVSYSAIISGCVQNGYAEK 396

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           AL +F +MQ     P + + +  L   S    +  G   HGY    GF + +  + +A+ 
Sbjct: 397 ALLIFRQMQSSGIAPYLETMIALLPACSHLAALQHGTCCHGYTVVRGFTNDTS-ICNAII 455

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           DMY KC  I  S  +F+    R +   N+++      G   +A+ +F  +   G+  D+V
Sbjct: 456 DMYSKCGKITISREIFDRMQNRDIISWNTMIIGYGIHGLCVEALSLFQELQALGLKPDDV 515

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           TL   L A S S     G        +     +  +A    ++D  +R G+++ ++   +
Sbjct: 516 TLIAVLSACSHSGLVTEGK-YWFSSMSQNFNIKPRMAHYICMVDLLARAGNLDEAYTFIQ 574

Query: 477 KIP-SPNVVCFTSIM 490
           ++P  PNV  + +++
Sbjct: 575 RMPFVPNVRIWGALL 589



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 70/283 (24%), Positives = 136/283 (48%), Gaps = 2/283 (0%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L P   T+ T+   C  +  L     L  +  +    L+    N  I  + K G +++A 
Sbjct: 308 LNPTPATLATMLRACAQLTDLKRGKKLHCHMIKSGMDLDTTVGNSLISMYAKCGIMDNAV 367

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
              DEM A+D V+Y+ +ISGC +  + ++AL ++ +M S GI     T  ++L  CS+  
Sbjct: 368 GFLDEMIAKDTVSYSAIISGCVQNGYAEKALLIFRQMQSSGIAPYLETMIALLPACSHLA 427

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G   H   +  GF  +  I + ++D+Y + G    + ++FD +  R++ +WN M+ 
Sbjct: 428 ALQHGTCCHGYTVVRGFTNDTSICNAIIDMYSKCGKITISREIFDRMQNRDIISWNTMII 487

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            +       E L ++ +++A G++P+ ++   ++  CS   L+ EGK   S + +   + 
Sbjct: 488 GYGIHGLCVEALSLFQELQALGLKPDDVTLIAVLSACSHSGLVTEGKYWFSSMSQNFNIK 547

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVS 286
             +     +VD  +  G+L EA      +P V +V  W ++++
Sbjct: 548 PRMAHYICMVDLLARAGNLDEAYTFIQRMPFVPNVRIWGALLA 590


>gi|255544622|ref|XP_002513372.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547280|gb|EEF48775.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 597

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 160/554 (28%), Positives = 302/554 (54%), Gaps = 5/554 (0%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           S+S +  +L +C       +G  IH  ++  GF  NL++ + L+  Y++ G ++ A  +F
Sbjct: 36  SSSLYMKILQLCIETEDLKQGCLIHSHIIRNGFDSNLHLSTKLIIFYVKFGETINARKVF 95

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D +PERN+ +W   +  + +     + L ++++M   GV  N  ++  ++R C+    L+
Sbjct: 96  DRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMGRAGVRANQFTYGSVLRACTGLRCLE 155

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G Q+H  + K  ++  N+FV +ALVD +S CG++ +A+  F+ +   DV+SWN+++  Y
Sbjct: 156 RGMQIHGCIQKNRFIG-NLFVQSALVDLHSKCGNMEDARYLFETMSERDVVSWNAVIGGY 214

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           A  D   D+  +F+ M      P   +    L  +SR  N+    QIHG + +LGF    
Sbjct: 215 AAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASSRANNLIKVCQIHGIIIQLGFG-SH 273

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI-KDAVEMFGFMV 407
           + +  +L D Y K   ++S+ A+++S   + +    ++MT      +  ++A+++F  M 
Sbjct: 274 IDLNGSLIDAYAKSEGMKSASALYKSMLKKDVISFTAIMTGYARKCSYSREALDLFKDMQ 333

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
              + +D+VT  T L   +  AS ++G  R +H  AIK     ++A   +L+D Y++ G 
Sbjct: 334 HIFMEIDDVTFCTMLNVCADIASLSIG--RQIHALAIKYKPSYDVATGNALVDMYAKSGE 391

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           IE + + F ++   NV+ +TS++ GY ++G G EA+ + + M   GL P+ +TFL +L  
Sbjct: 392 IEDATRAFYEMKEKNVISWTSLITGYGKHGYGHEAIALYKKMEYEGLKPNDITFLSLLFA 451

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+HSG+  EG   FN+M + Y I    +HYSCMID+  R G L++A  ++ +     +  
Sbjct: 452 CSHSGLTGEGWECFNNMITKYNILPRAEHYSCMIDLFARGGQLEEAYNMICKMNIKPNSS 511

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           +W ++L +C ++G+  +G   A  L+ ++P + A Y  ++  Y+  G ++ + ++R    
Sbjct: 512 LWGAILGACSIYGHMSLGEVAATHLLRMDPENSANYVVLAGIYAASGSWDKACRMRNLME 571

Query: 648 ARKLTRDIGHSLIE 661
            R L +  G+S+I+
Sbjct: 572 YRSLKKIPGYSIIQ 585



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 134/493 (27%), Positives = 231/493 (46%), Gaps = 19/493 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++ S + I  +VK G   +A+K+FD MP R++V++   ISG  K  H + AL ++ +M 
Sbjct: 71  NLHLSTKLIIFYVKFGETINARKVFDRMPERNVVSWTAQISGYAKNGHYQDALLVFSQMG 130

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++ +  T+ SVL  C+       G+QIH  +    F  NL++ S LVDL+ + G   
Sbjct: 131 RAGVRANQFTYGSVLRACTGLRCLERGMQIHGCIQKNRFIGNLFVQSALVDLHSKCGNME 190

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ + ER++ +WN ++  +      D+  RM+  M  EGV P+  +   +++  S
Sbjct: 191 DARYLFETMSERDVVSWNAVIGGYAAQDFNDDSFRMFYSMMGEGVTPDCFTLGSVLKASS 250

Query: 223 IGMLLDEGKQLHSHVIKLGW---VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
               L +  Q+H  +I+LG+   +D+N     +L+D Y+    +  A   +  +   DVI
Sbjct: 251 RANNLIKVCQIHGIIIQLGFGSHIDLN----GSLIDAYAKSEGMKSASALYKSMLKKDVI 306

Query: 280 SWNSIVSIYADY-DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           S+ +I++ YA       +AL+LF  MQ         +F   LN  +   ++  G+QIH  
Sbjct: 307 SFTAIMTGYARKCSYSREALDLFKDMQHIFMEIDDVTFCTMLNVCADIASLSIGRQIHAL 366

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K    +  V   +AL DMY K   IE +   F     +++    SL+T     G   +
Sbjct: 367 AIKYKPSY-DVATGNALVDMYAKSGEIEDATRAFYEMKEKNVISWTSLITGYGKHGYGHE 425

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ ++  M  EG+  +++T  + L A S S     G     +     +        SC +
Sbjct: 426 AIALYKKMEYEGLKPNDITFLSLLFACSHSGLTGEGWECFNNMITKYNILPRAEHYSC-M 484

Query: 459 MDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDMLEVMIQRGL 514
           +D ++R G +E ++ +  K+   PN   + +I+     Y    +G  A   L  M     
Sbjct: 485 IDLFARGGQLEEAYNMICKMNIKPNSSLWGAILGACSIYGHMSLGEVAATHLLRM----- 539

Query: 515 IPDKVTFLCVLAG 527
            P+      VLAG
Sbjct: 540 DPENSANYVVLAG 552


>gi|347954528|gb|AEP33764.1| organelle transcript processing 82, partial [Iberis amara]
          Length = 666

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 170/570 (29%), Positives = 300/570 (52%), Gaps = 42/570 (7%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR----ALDLFDELPERNLATWNLMLRAFC 187
           IH +++  G     Y  S L++  + + P       A+ +F+ + E NL  WN M R   
Sbjct: 9   IHAQMIKTGLHNTNYALSKLIEFCI-LSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHA 67

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             S P   L++Y  M + G+ PN  +F ++++ C+      EG+Q+H HV+KLG  D+++
Sbjct: 68  LSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLG-CDLDL 126

Query: 248 FVANALVDFYSACGSL------------------------------IE-AKKSFDFIPVD 276
           +V  +L+  Y   G L                              IE A+K FD IPV 
Sbjct: 127 YVHTSLISMYVQNGRLEDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVK 186

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWN+++S YA+     +ALELF  M     RP   + V  ++  +++G++  G+Q+H
Sbjct: 187 DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 246

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            ++   GF   ++ + +AL D+Y KC  +E++  +FE  P + +   N+L+    H    
Sbjct: 247 SWIDDHGFG-SNLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLY 305

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNIAV 454
           K+A+ +F  M+  G   ++VT+ + L A +   + ++G  R +H    K   G  +  ++
Sbjct: 306 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG--RWIHVYIDKRLKGVANASSL 363

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++CG IE +HQVF  I   ++  + +++ G++ +G    + D+   M + G+
Sbjct: 364 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGI 423

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD +TF+ +L+ C+HSGM+  G+ +F SM   Y +    +HY CMID+LG +G+  +AE
Sbjct: 424 EPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAE 483

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E++       D ++W SLL++C++HGN  +G   A  L+++EP +   Y  +SN Y+  G
Sbjct: 484 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAG 543

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +      R     + + +  G S IE++S
Sbjct: 544 RWNEVANTRALLNDKGMKKVPGCSSIEIDS 573



 Score =  176 bits (445), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 144/544 (26%), Positives = 242/544 (44%), Gaps = 80/544 (14%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ I+  + S H +    A  +F+ +   +++ +N +  G      P  AL LY  M
Sbjct: 23  YALSKLIEFCILSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCM 82

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP- 160
           +S G+  ++ TF  +L  C+ +  + EG QIH  VL LG  L+LY+ + L+ +Y++ G  
Sbjct: 83  ISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRL 142

Query: 161 ----------------SVRAL--------------DLFDELPERNLATWNLMLRAFCELS 190
                           S  AL               +FDE+P +++ +WN M+  + E  
Sbjct: 143 EDAHKVFDESPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETG 202

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----V 245
              E L ++  M    V P+  +   +V  C+    ++ G+Q+HS      W+D      
Sbjct: 203 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHS------WIDDHGFGS 256

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N+ + NAL+D YS CG L  A   F+ +P  DVISWN+++  Y   +L  +AL LF  M 
Sbjct: 257 NLKIVNALIDLYSKCGELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 316

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFDHGSVHVQSALTDMYGKCNV 364
              + P+  + +  L   +  G +  G+ IH Y+ K L     +  ++++L DMY KC  
Sbjct: 317 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGD 376

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           IE++  VF S   +SL   N+++      G    + ++F  M   GI  D++T    L A
Sbjct: 377 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSA 436

Query: 425 LSVSASANLG-------------SCRLLHC-CAI----KSGF-------------ESNIA 453
            S S   +LG             + +L H  C I     SG              E +  
Sbjct: 437 CSHSGMLDLGRHIFRSMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGV 496

Query: 454 VSCSLMDAYSRCGHIELSH---QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           + CSL+ A    G++EL     Q   KI   N   +  + N Y+  G   E  +   ++ 
Sbjct: 497 IWCSLLKACKMHGNVELGESFAQNLIKIEPENPGSYVLLSNIYATAGRWNEVANTRALLN 556

Query: 511 QRGL 514
            +G+
Sbjct: 557 DKGM 560



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 106/397 (26%), Positives = 193/397 (48%), Gaps = 35/397 (8%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P  ++ S    I  +   G++ +A+K+FDE+P +D+V++N +ISG  +  + K+AL L+
Sbjct: 152 SPHRDVVSYTALIKGYASRGYIENAQKMFDEIPVKDVVSWNAMISGYAETGNYKEALELF 211

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            +M+   ++   ST  +V+S C+ +G    G Q+H  +   GFG NL I + L+DLY + 
Sbjct: 212 KDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNALIDLYSKC 271

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LF+ LP +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++
Sbjct: 272 GELETACGLFEGLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 331

Query: 219 RGCSIGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
             C+    +D G+ +H ++ K L  V     +  +L+D Y+ CG +  A + F+ I    
Sbjct: 332 PACAHLGAIDIGRWIHVYIDKRLKGVANASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 391

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           + SWN+++  +A +     + ++F RM+     P   +FV  L+  S +G +  G+    
Sbjct: 392 LSSWNAMIFGFAMHGRADASFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR---- 447

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
                       H+  ++T  Y             +  P   LE    ++  L HSG  K
Sbjct: 448 ------------HIFRSMTQDY-------------KMTP--KLEHYGCMIDLLGHSGLFK 480

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           +A EM   M  E    D V   + LKA  +  +  LG
Sbjct: 481 EAEEMINTMEMEP---DGVIWCSLLKACKMHGNVELG 514


>gi|118488304|gb|ABK95971.1| unknown [Populus trichocarpa]
          Length = 749

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 183/621 (29%), Positives = 325/621 (52%), Gaps = 9/621 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           N  +  +++ G  + A  +F+ M  +RD V++N+LI G          L+ +      G 
Sbjct: 86  NSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGF 145

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + + ST   V+  C   G   +G+ +H  ++  GF     + + L+ +Y+       A +
Sbjct: 146 EPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMEC-ARE 204

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGM 225
           LFDE+ E+++  W++M+  + +   P   L+M+ KM    G+EP+G+    +++ C+   
Sbjct: 205 LFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSR 264

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  G+ +H  VI  G+ D ++FV N+L+D YS C     A K F+ I   + +SWNS++
Sbjct: 265 DVCTGRLVHGLVIHRGF-DCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSML 323

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S +   +   +A  L   M+  R      + V  L       + +  K IH  + + G +
Sbjct: 324 SGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSE 383

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
              + V SAL D Y KC +IE +  VF     R +   +++++   H G   +A+ ++  
Sbjct: 384 ANEL-VLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQE 442

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  + +  + +T+   L+A SV+A   L   +  H  AI+ GF S + V  +++D YS+C
Sbjct: 443 MDRDLVKPNVITIINLLEACSVTA--ELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKC 500

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G I  S + F+++   N+V +++++  Y  NG+  EAL +   M + GL P+ VT L VL
Sbjct: 501 GEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVL 560

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG-- 583
           A C+H G+V+EG  +F SM    G++   +HYSCM+DMLGRAG LD A E+++  P    
Sbjct: 561 AACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPDNLK 620

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W SLL +CR +G   +G+   + ++ELEP + A Y   S+ Y+  G ++ + +IR
Sbjct: 621 NGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIR 680

Query: 644 ETALARKLTRDIGHSLIEVNS 664
             A  + +    G+SL+ +++
Sbjct: 681 VLAKEKGVKVVAGYSLVHIDN 701



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 112/473 (23%), Positives = 220/473 (46%), Gaps = 4/473 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P + T+  +   C  +      L+L  Y   +    I S   ++        +  A++LF
Sbjct: 147 PNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELF 206

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV-SHGIKESASTFSSVLSVCSNAGFY 126
           DEM  +D++ ++++I G  ++  P+  L ++ +MV   GI+       SVL  C+++   
Sbjct: 207 DEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDV 266

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  +H  V+  GF  +L++ + L+D+Y +   +  A  +F+E+ +RN  +WN ML  F
Sbjct: 267 CTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGF 326

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                  E   + + M+ E VE + ++   +++ C   +     K +H  +I+ G  + N
Sbjct: 327 VLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRG-SEAN 385

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             V +AL+D Y+ C  +  A + F  +   DV+SW++++S +A      +A+ ++  M  
Sbjct: 386 ELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDR 445

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +P++ + +  L   S T  +   K  HG   + GF    V V +A+ DMY KC  I 
Sbjct: 446 DLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFA-SEVTVGTAVVDMYSKCGEIL 504

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           +S   F+    +++   ++++ +   +G   +A+ +F  M   G+  + VT  + L A S
Sbjct: 505 ASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACS 564

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
                  G   L      + G E        ++D   R G ++ + +V + +P
Sbjct: 565 HGGLVEEG-LSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMP 616



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 251/521 (48%), Gaps = 14/521 (2%)

Query: 83  SGCGKFRHPKQALYLYDEMVSHGIKE-SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF 141
           S  GK+   ++ +  Y E+   GI+    S F  +L   S    +  G  +H  ++  GF
Sbjct: 23  SANGKW---QEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLS-HRHGKSLHACLIKQGF 78

Query: 142 GLNLYIGSPLVDLYMRMGPSVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYN 200
                IG+ ++  Y+R G    A+D+F+ +   R+  +WN+++    +       L  + 
Sbjct: 79  DSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFT 138

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
             +  G EPN  +   +++ C I     +G  LH ++IK G+  ++  V N+L+  Y   
Sbjct: 139 NARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAIS-SVQNSLLSMY-VD 196

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEF 319
             +  A++ FD +   DVI+W+ ++  Y  ++     L++F +M L     P     V  
Sbjct: 197 ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSV 256

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L   + + +V  G+ +HG V   GFD   + V+++L DMY KC    S+  VF     R+
Sbjct: 257 LKACASSRDVCTGRLVHGLVIHRGFD-CDLFVENSLIDMYSKCKDAGSAFKVFNEISQRN 315

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
               NS+++  + + N  +A  +   M  E +  DEVTL   L+            C+ +
Sbjct: 316 NVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPF--HCKSI 373

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           HC  I+ G E+N  V  +L+DAY++C  IE++ +VF ++   +VV ++++++G++  G  
Sbjct: 374 HCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKP 433

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            EA+ + + M +  + P+ +T + +L  C+ +  +K  +   + +    G  ++    + 
Sbjct: 434 DEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWA-HGVAIRQGFASEVTVGTA 492

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           ++DM  + G +  +     Q     + + WS+++ +  ++G
Sbjct: 493 VVDMYSKCGEILASRRAFDQL-ALKNIVTWSAMIAAYGMNG 532


>gi|224132434|ref|XP_002328268.1| predicted protein [Populus trichocarpa]
 gi|222837783|gb|EEE76148.1| predicted protein [Populus trichocarpa]
          Length = 749

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 183/621 (29%), Positives = 325/621 (52%), Gaps = 9/621 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           N  +  +++ G  + A  +F+ M  +RD V++N+LI G          L+ +      G 
Sbjct: 86  NSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFTNARVAGF 145

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + + ST   V+  C   G   +G+ +H  ++  GF     + + L+ +Y+       A +
Sbjct: 146 EPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMEC-ARE 204

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGM 225
           LFDE+ E+++  W++M+  + +   P   L+M+ KM    G+EP+G+    +++ C+   
Sbjct: 205 LFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSR 264

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  G+ +H  VI  G+ D ++FV N+L+D YS C     A K F+ I   + +SWNS++
Sbjct: 265 DVCTGRLVHGLVIHRGF-DCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSML 323

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S +   +   +A  L   M+  R      + V  L       + +  K IH  + + G +
Sbjct: 324 SGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRGSE 383

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
              + V SAL D Y KC +IE +  VF     R +   +++++   H G   +A+ ++  
Sbjct: 384 ANEL-VLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQE 442

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  + +  + +T+   L+A SV+A   L   +  H  AI+ GF S + V  +++D YS+C
Sbjct: 443 MDRDLVKPNVITIINLLEACSVTA--ELKRSKWAHGVAIRQGFASEVTVGTAVVDMYSKC 500

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G I  S + F+++   N+V +++++  Y  NG+  EAL +   M + GL P+ VT L VL
Sbjct: 501 GEILASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVL 560

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG-- 583
           A C+H G+V+EG  +F SM    G++   +HYSCM+DMLGRAG LD A E+++  P    
Sbjct: 561 AACSHGGLVEEGLSLFKSMVQELGLEPGFEHYSCMVDMLGRAGKLDTAIEVIKAMPHNLK 620

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W SLL +CR +G   +G+   + ++ELEP + A Y   S+ Y+  G ++ + +IR
Sbjct: 621 NGASIWGSLLSACRSYGLTELGKEAISRVLELEPSNSAGYLVASSMYAADGLWDDAARIR 680

Query: 644 ETALARKLTRDIGHSLIEVNS 664
             A  + +    G+SL+ +++
Sbjct: 681 VLAKEKGVKVVAGYSLVHIDN 701



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 225/476 (47%), Gaps = 10/476 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P + T+  +   C  +      L+L  Y   +    I S   ++        +  A++LF
Sbjct: 147 PNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAISSVQNSLLSMYVDADMECARELF 206

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV-SHGIKESASTFSSVLSVCSNAGFY 126
           DEM  +D++ ++++I G  ++  P+  L ++ +MV   GI+       SVL  C+++   
Sbjct: 207 DEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSVLKACASSRDV 266

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  +H  V+  GF  +L++ + L+D+Y +   +  A  +F+E+ +RN  +WN ML  F
Sbjct: 267 CTGRLVHGLVIHRGFDCDLFVENSLIDMYSKCKDAGSAFKVFNEISQRNNVSWNSMLSGF 326

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                  E   + + M+ E VE + ++   +++ C   +     K +H  +I+ G  + N
Sbjct: 327 VLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPFHCKSIHCVMIRRG-SEAN 385

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             V +AL+D Y+ C  +  A + F  +   DV+SW++++S +A      +A+ ++  M  
Sbjct: 386 ELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKPDEAIAVYQEMDR 445

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +P++ + +  L   S T  +   K  HG   + GF    V V +A+ DMY KC  I 
Sbjct: 446 DLVKPNVITIINLLEACSVTAELKRSKWAHGVAIRQGFA-SEVTVGTAVVDMYSKCGEIL 504

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           +S   F+    +++   ++++ +   +G   +A+ +F  M   G+  + VT  + L A S
Sbjct: 505 ASRRAFDQLALKNIVTWSAMIAAYGMNGLAHEALALFAEMKRHGLKPNPVTTLSVLAACS 564

Query: 427 VSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
                  G      ++    ++ GFE     SC ++D   R G ++ + +V + +P
Sbjct: 565 HGGLVEEGLSLFKSMVQELGLEPGFEH---YSC-MVDMLGRAGKLDTAIEVIKAMP 616



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 126/521 (24%), Positives = 251/521 (48%), Gaps = 14/521 (2%)

Query: 83  SGCGKFRHPKQALYLYDEMVSHGIKE-SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF 141
           S  GK+   ++ +  Y E+   GI+    S F  +L   S    +  G  +H  ++  GF
Sbjct: 23  SANGKW---QEVVSHYHEIKKAGIQTVDVSVFPPILKAWSFLS-HRHGKSLHACLIKQGF 78

Query: 142 GLNLYIGSPLVDLYMRMGPSVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYN 200
                IG+ ++  Y+R G    A+D+F+ +   R+  +WN+++    +       L  + 
Sbjct: 79  DSFTSIGNSIMGFYIRCGDFDIAVDVFNSMRRSRDSVSWNILIHGHLDNGALVAGLWWFT 138

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
             +  G EPN  +   +++ C I     +G  LH ++IK G+  ++  V N+L+  Y   
Sbjct: 139 NARVAGFEPNISTMVLVIQACRILGTKHDGLILHGYLIKSGFWAIS-SVQNSLLSMY-VD 196

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEF 319
             +  A++ FD +   DVI+W+ ++  Y  ++     L++F +M L     P     V  
Sbjct: 197 ADMECARELFDEMHEKDVIAWSVMIGGYLQWEEPQVGLQMFRKMVLVPGIEPDGVVMVSV 256

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L   + + +V  G+ +HG V   GFD   + V+++L DMY KC    S+  VF     R+
Sbjct: 257 LKACASSRDVCTGRLVHGLVIHRGFD-CDLFVENSLIDMYSKCKDAGSAFKVFNEISQRN 315

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
               NS+++  + + N  +A  +   M  E +  DEVTL   L+            C+ +
Sbjct: 316 NVSWNSMLSGFVLNENYSEAQSLISSMRKERVETDEVTLVNILQICKYFVHPF--HCKSI 373

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           HC  I+ G E+N  V  +L+DAY++C  IE++ +VF ++   +VV ++++++G++  G  
Sbjct: 374 HCVMIRRGSEANELVLSALIDAYAKCYLIEIAWEVFARMRRRDVVSWSTMISGFAHCGKP 433

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            EA+ + + M +  + P+ +T + +L  C+ +  +K  +   + +    G  ++    + 
Sbjct: 434 DEAIAVYQEMDRDLVKPNVITIINLLEACSVTAELKRSKWA-HGVAIRQGFASEVTVGTA 492

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           ++DM  + G +  +     Q     + + WS+++ +  ++G
Sbjct: 493 VVDMYSKCGEILASRRAFDQL-ALKNIVTWSAMIAAYGMNG 532


>gi|449443642|ref|XP_004139586.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449492832|ref|XP_004159115.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 663

 Score =  286 bits (732), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 174/608 (28%), Positives = 302/608 (49%), Gaps = 72/608 (11%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR--------------MGPSV--- 162
           CS+ G+     Q+H      GFG N  I + ++D+Y++                PS+   
Sbjct: 3   CSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFSW 62

Query: 163 --------------RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
                         RA+D F ++PER+  +WN ++ AF       + L  + +M  +G +
Sbjct: 63  NCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMWIQGCQ 122

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           PN +++  ++  C+       GK LH+ ++++    +++ V N LVD Y+ CG +  +K+
Sbjct: 123 PNSMTYASVLSACANIYDFQWGKHLHARIVRVE-PFLDVLVGNGLVDMYAKCGLIDASKR 181

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS---FVEFLNFASR 325
            F+ +   +V++W S++S  A +    +  ++F++M   RK   I         L     
Sbjct: 182 VFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQM---RKDCVIMDNFILATILGVCEG 238

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
             N+  G+Q+HG+  K G +  SV V +A   MY KC   E +   FE+     +    +
Sbjct: 239 ETNISIGEQLHGFTVKTGMN-SSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTT 297

Query: 386 LMTSLLHSGNIKDAVEMFGFM--------------------VDEGIGL-----------D 414
           ++TS  HSGN++ A + F  M                     +EG+ L           D
Sbjct: 298 MITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPD 357

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
            +T  T + A S  A + LG+  L    A+K G  S+++V  S +  YSRCG IE +  +
Sbjct: 358 WITFVTMIGACSELAISKLGTQILSQ--AVKVGLGSDVSVVNSAITLYSRCGRIEEAQNL 415

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F+ I   N++ + SIM GY++NG G + +++ + M+  G  PD +T++ +L+GC+HSG+V
Sbjct: 416 FDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLV 475

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           KE +  FNSM   +GI    +H+ CM+D+ GRAG+L  A +++ Q P   +  +W +LL 
Sbjct: 476 KEAKYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGALLS 535

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +CR+H +  +       L+EL   +F  Y  ++N YS  G  E   ++R+    +++ +D
Sbjct: 536 ACRIHHDTEMAELAMKNLLELNTENFESYILLANTYSSFGRLECVSEVRQVMKEKRVQKD 595

Query: 655 IGHSLIEV 662
            G S IEV
Sbjct: 596 PGCSWIEV 603



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 215/484 (44%), Gaps = 39/484 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++S N  I  + K   +  A   F +MP RD V++N +IS         Q+L  + EM 
Sbjct: 58  SLFSWNCMIYGYSKLHEMGRAIDTFRQMPERDSVSWNTIISAFSHHGLHIQSLGTFVEMW 117

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G + ++ T++SVLS C+N   +  G  +H R++ +   L++ +G+ LVD+Y + G   
Sbjct: 118 IQGCQPNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLID 177

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  +F+ L E N+ TW  ++         +EV  ++ +M+ + V  +      ++  C 
Sbjct: 178 ASKRVFNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCE 237

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC---------------------- 260
               +  G+QLH   +K G ++ ++ V NA +  Y+ C                      
Sbjct: 238 GETNISIGEQLHGFTVKTG-MNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWT 296

Query: 261 ---------GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
                    G++  A+  F+ +P  +VISWN+++  Y       + L+L+  M     RP
Sbjct: 297 TMITSFSHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRP 356

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              +FV  +   S       G QI     K+G       V SA+T +Y +C  IE +  +
Sbjct: 357 DWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAIT-LYSRCGRIEEAQNL 415

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F+S   ++L   NS+M     +G     +E+F  M+  G   D +T    L   S S   
Sbjct: 416 FDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLV 475

Query: 432 NLGSCRLLHCCAIKSGFESNIAVS--CSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTS 488
                   H  ++   F  ++ +     ++D + R G ++L+  + +++P  PN   + +
Sbjct: 476 KEAK---YHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNASIWGA 532

Query: 489 IMNG 492
           +++ 
Sbjct: 533 LLSA 536



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 104/430 (24%), Positives = 198/430 (46%), Gaps = 42/430 (9%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDS-YCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T  ++   C +I        L +   +  P L++   N  +D + K G ++++K++
Sbjct: 123 PNSMTYASVLSACANIYDFQWGKHLHARIVRVEPFLDVLVGNGLVDMYAKCGLIDASKRV 182

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F+ +   ++VT+  LISG   F   ++   ++ +M    +       +++L VC      
Sbjct: 183 FNTLREHNVVTWTSLISGIAHFGSQEEVYDIFYQMRKDCVIMDNFILATILGVCEGETNI 242

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP-------------------------- 160
           + G Q+H   +  G   ++ +G+  + +Y + G                           
Sbjct: 243 SIGEQLHGFTVKTGMNSSVPVGNATLSMYAKCGDFEKASLAFETMAAHDVISWTTMITSF 302

Query: 161 -----SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
                  RA D F+ +PERN+ +WN ML A+C+ S  +E L++Y  M  + V P+ ++F 
Sbjct: 303 SHSGNVERARDYFNRMPERNVISWNAMLGAYCQNSFWEEGLKLYILMLRQEVRPDWITFV 362

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            M+  CS   +   G Q+ S  +K+G +  ++ V N+ +  YS CG + EA+  FD I  
Sbjct: 363 TMIGACSELAISKLGTQILSQAVKVG-LGSDVSVVNSAITLYSRCGRIEEAQNLFDSIQE 421

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            ++ISWNSI+  YA        +E+F  M +   +P   +++  L+  S +G V   K  
Sbjct: 422 KNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSGCSHSGLVKEAKYH 481

Query: 336 HGYVTKLGFDHG-SVHVQS--ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
              +TK   D G SV ++    + D++G+  +++ ++ + +  P +      S+  +LL 
Sbjct: 482 FNSMTK---DFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNA---SIWGALLS 535

Query: 393 SGNIKDAVEM 402
           +  I    EM
Sbjct: 536 ACRIHHDTEM 545



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 46/205 (22%), Positives = 99/205 (48%), Gaps = 6/205 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSI-VPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML  ++ P   T  T+   C+ + +    + +L    +     ++   N  I  + + G 
Sbjct: 349 MLRQEVRPDWITFVTMIGACSELAISKLGTQILSQAVKVGLGSDVSVVNSAITLYSRCGR 408

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ LFD +  ++++++N ++ G  +     + + ++  M+  G K    T+ ++LS 
Sbjct: 409 IEEAQNLFDSIQEKNLISWNSIMGGYAQNGEGMKVIEIFQNMLMAGCKPDHITYIAILSG 468

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGS--PLVDLYMRMGPSVRALDLFDELPER-NL 176
           CS++G   E  + H   ++  FG+++ +     +VDL+ R G    ALD+ D++P + N 
Sbjct: 469 CSHSGLVKEA-KYHFNSMTKDFGISVTLEHFVCMVDLFGRAGLLKLALDMIDQMPFKPNA 527

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNK 201
           + W  +L A C +    E+  +  K
Sbjct: 528 SIWGALLSA-CRIHHDTEMAELAMK 551



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 33/109 (30%), Positives = 61/109 (55%), Gaps = 9/109 (8%)

Query: 429 ASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           A +++G  R+   LH  + K GF +N  +  S++D Y +C  I  + QVF +I  P++  
Sbjct: 2   ACSSVGYIRIAHQLHGLSEKYGFGNNKVIQNSIIDMYIKCDAIYAAEQVFLRIEKPSLFS 61

Query: 486 FTSIMNGYSR-NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +  ++ GYS+ + MGR A+D    M +R    D V++  +++  +H G+
Sbjct: 62  WNCMIYGYSKLHEMGR-AIDTFRQMPER----DSVSWNTIISAFSHHGL 105


>gi|297794367|ref|XP_002865068.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297310903|gb|EFH41327.1| hypothetical protein ARALYDRAFT_920083 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 659

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 165/616 (26%), Positives = 315/616 (51%), Gaps = 33/616 (5%)

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV-SHGIK 107
           + ++  V+  +  +A+ LFD+MP RD+V++  +I+G     +  +AL L+  ++    + 
Sbjct: 25  KPVEKIVRISNQGAARHLFDQMPHRDIVSWTAIINGYVTAANSFEALNLFSALLFDPAVS 84

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
              S  S  L  C  +     G  +H          ++++G+ L+++YMR G   +   +
Sbjct: 85  PDTSVLSVALKACGQSSNIGYGESLHAYAFKTSLLTSVFVGTNLLNMYMRTGKIDKGCRI 144

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F E+  RN  TW  ++    E  R  E L  +++M       +  +F   ++ C+    +
Sbjct: 145 FTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFSEMSRSKGLSDDFAFATALKACARLRQV 204

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             GK++H+HVI  G  D ++ V N+L++ Y+ CG + +    F+ +   DV SW +++  
Sbjct: 205 KYGKEIHTHVIVRG-SDASLCVVNSLINMYTECGEMHDGVHLFESMSERDVFSWTTLIDA 263

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+               Q+ ++  ++ +F++   F   +   YF          LG    
Sbjct: 264 YS---------------QMGQEEKAVATFLKIEIFRRTSQWTYFC---------LG---D 296

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           S+ V +++  MY  C  ++S+  +F+    R +   ++++     +G  ++    F +M 
Sbjct: 297 SLSVSNSMMKMYSTCGKLDSASVLFQGMRRRDIITWSTIIGGYSQAGLGEEVFMCFSWMR 356

Query: 408 DEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             G    +  L++ L   SVS + A L   R +H  A+  G E N  +  +L++ YS+CG
Sbjct: 357 QAGPKPTDPALASLL---SVSGTMAVLEQGRQVHALALYLGLEQNSTIRSALINMYSKCG 413

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            IE + ++FE+  + ++V  T+++NGY+ +G  +EA+D+ E  ++ GL PD VTF+ VL 
Sbjct: 414 SIEEASKIFEETDTDDIVSLTAMINGYAEHGNTKEAIDLFEKSLKVGLRPDTVTFISVLT 473

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+HSG +  G   FN M+  Y I   ++HY CM+D+L RAG L  AE+++ + P   D 
Sbjct: 474 ACSHSGQLDLGFRYFNLMQDEYNIRPVKEHYGCMVDLLCRAGRLSDAEKMINEMPWKKDD 533

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
           ++W++LL +C+  G+   GRR A  ++EL+P     +  ++N YS  G+ E +  +R+  
Sbjct: 534 VVWTTLLNACKAKGDTERGRRAAERILELDPTSETAFVTLANIYSSTGKLEEAAHVRKAM 593

Query: 647 LARKLTRDIGHSLIEV 662
            ++ + +  G S I++
Sbjct: 594 KSKGVIKVPGWSSIKI 609



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/507 (21%), Positives = 225/507 (44%), Gaps = 35/507 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++     ++ ++++G ++   ++F EM  R+ VT+  ++SG  +    K+ L  + EM 
Sbjct: 121 SVFVGTNLLNMYMRTGKIDKGCRIFTEMQFRNTVTWTAIVSGMVEAGRHKEGLTYFSEMS 180

Query: 103 -SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            S G+ +  + F++ L  C+       G +IH  V+  G   +L + + L+++Y   G  
Sbjct: 181 RSKGLSDDFA-FATALKACARLRQVKYGKEIHTHVIVRGSDASLCVVNSLINMYTECGEM 239

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              + LF+ + ER++ +W  ++ A+ ++ + ++ +  + K++          FC      
Sbjct: 240 HDGVHLFESMSERDVFSWTTLIDAYSQMGQEEKAVATFLKIEIFRRTSQWTYFC------ 293

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                                +  ++ V+N+++  YS CG L  A   F  +   D+I+W
Sbjct: 294 ---------------------LGDSLSVSNSMMKMYSTCGKLDSASVLFQGMRRRDIITW 332

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++I+  Y+   L  +    F  M+    +P+  +    L+ +     +  G+Q+H     
Sbjct: 333 STIIGGYSQAGLGEEVFMCFSWMRQAGPKPTDPALASLLSVSGTMAVLEQGRQVHALALY 392

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LG +  S  ++SAL +MY KC  IE +  +FE      +    +++      GN K+A++
Sbjct: 393 LGLEQNST-IRSALINMYSKCGSIEEASKIFEETDTDDIVSLTAMINGYAEHGNTKEAID 451

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F   +  G+  D VT  + L A S S   +LG  R  +    +            ++D 
Sbjct: 452 LFEKSLKVGLRPDTVTFISVLTACSHSGQLDLG-FRYFNLMQDEYNIRPVKEHYGCMVDL 510

Query: 462 YSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
             R G +  + ++  ++P   + V +T+++N     G         E +++  L P   T
Sbjct: 511 LCRAGRLSDAEKMINEMPWKKDDVVWTTLLNACKAKGDTERGRRAAERILE--LDPTSET 568

Query: 521 FLCVLAGC-NHSGMVKEGQLVFNSMKS 546
               LA   + +G ++E   V  +MKS
Sbjct: 569 AFVTLANIYSSTGKLEEAAHVRKAMKS 595


>gi|225423551|ref|XP_002274884.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial [Vitis vinifera]
 gi|147818711|emb|CAN65040.1| hypothetical protein VITISV_009460 [Vitis vinifera]
          Length = 700

 Score =  286 bits (732), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/609 (28%), Positives = 322/609 (52%), Gaps = 8/609 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST-FSSV 116
           GH+  A+ +FD +   D+ ++ ++I          + +  Y+  +   + E  +  FS V
Sbjct: 85  GHVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIV 144

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L  CS      EG ++HC+++ +G   + ++ + LVD+Y +      +  +FDE+ +RN+
Sbjct: 145 LKACSELRETDEGRKLHCQIVKVG-SPDSFVLTGLVDMYAKCREVEDSRRVFDEILDRNV 203

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
             W  M+  + +     E L ++N+M+   VE N  +   +V  C+    L +GK +H +
Sbjct: 204 VCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGY 263

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           VIK G+ D+N F+   L+D Y  CG + +A   FD +   D++SW +++  YA      +
Sbjct: 264 VIKSGF-DLNSFLVTPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPRE 322

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           AL+LF   +     P+  +    L+  ++TG++  G+ +H    KLG +  +   ++AL 
Sbjct: 323 ALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGRSVHCLGIKLGSEDATF--ENALV 380

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           DMY KC++I  +  VFE+   + +   NS+++    +G   +A+E+F  M  + +  D +
Sbjct: 381 DMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDAI 440

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFES-NIAVSCSLMDAYSRCGHIELSHQVF 475
           TL + L A +   +  +GS   LH  AIK+G  S ++ V  +L++ Y++CG  E +  +F
Sbjct: 441 TLVSVLSACASVGAYRVGSS--LHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIF 498

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           +++   N + +++++ GY   G    +L++   M++  L P++V F  +L+ C+HSGM+ 
Sbjct: 499 DEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLEPNEVIFTTILSACSHSGMLG 558

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG   FN+M  VY      +HY+CM+D+L RAG L++A + +++ P   D  +  + L  
Sbjct: 559 EGWRYFNTMCQVYNFVPSMKHYACMVDLLARAGRLEEALDFIEKIPIQPDVSLLGAFLHG 618

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           CR+H    +G      ++EL P     Y  +SN Y+  G +  + Q+ E    R L +  
Sbjct: 619 CRLHSRFDLGEVAVRRMLELHPDKACYYVLMSNLYASEGRWSQANQVMELMKQRGLAKLP 678

Query: 656 GHSLIEVNS 664
           G SL+++ +
Sbjct: 679 GWSLVDIET 687



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 142/501 (28%), Positives = 249/501 (49%), Gaps = 15/501 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D + K   +  ++++FDE+  R++V +  +I G  +    K+ L L++ M    ++ + 
Sbjct: 179 VDMYAKCREVEDSRRVFDEILDRNVVCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQ 238

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T  S+++ C+  G   +G  +H  V+  GF LN ++ +PL+DLY + G    A  +FDE
Sbjct: 239 YTLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDE 298

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           L   +L +W  M+  + +   P E L+++   + + + PN ++   ++  C+    L+ G
Sbjct: 299 LSTIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG 358

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           + +H   IKLG  D      NALVD Y+ C  + +A+  F+ +   DVI+WNSI+S Y  
Sbjct: 359 RSVHCLGIKLGSEDATF--ENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQ 416

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
               ++ALELF +M+     P   + V  L+  +  G    G  +HGY  K G   GSV+
Sbjct: 417 NGYAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVY 476

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL + Y KC   ES+  +F+    ++    ++++      G+   ++E+FG M+ E 
Sbjct: 477 VGTALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEK 536

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  +EV  +T L A S S     G       C + +   S    +C ++D  +R G +E 
Sbjct: 537 LEPNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVPSMKHYAC-MVDLLARAGRLEE 595

Query: 471 SHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREAL-DMLEVMIQRGLIPDKVTFLCVL 525
           +    EKIP  P+V    + ++G   +SR  +G  A+  MLE      L PDK  +  ++
Sbjct: 596 ALDFIEKIPIQPDVSLLGAFLHGCRLHSRFDLGEVAVRRMLE------LHPDKACYYVLM 649

Query: 526 AGCNHS-GMVKEGQLVFNSMK 545
           +    S G   +   V   MK
Sbjct: 650 SNLYASEGRWSQANQVMELMK 670



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 245/503 (48%), Gaps = 16/503 (3%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGI--------QIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           E   T +S+ S+ SN  F   GI        +IH  ++  G   +L   + LV LY   G
Sbjct: 26  EIDRTIASIQSISSNPCFSLLGICKTVSSLRKIHALLVVHGLSEDLLCETKLVSLYGSFG 85

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN-KMKAEGVEPNGLSFCYMV 218
               A  +FD +   +L +W +M+R +       E+++ YN +++    E + + F  ++
Sbjct: 86  HVECARLMFDRIRNPDLYSWKVMIRWYFLNDSYSEIVQFYNTRLRKCLNEYDNVVFSIVL 145

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           + CS     DEG++LH  ++K+G  D   FV   LVD Y+ C  + ++++ FD I   +V
Sbjct: 146 KACSELRETDEGRKLHCQIVKVGSPDS--FVLTGLVDMYAKCREVEDSRRVFDEILDRNV 203

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           + W S++  Y   D + + L LF RM+      +  +    +   ++ G ++ GK +HGY
Sbjct: 204 VCWTSMIVGYVQNDCLKEGLVLFNRMREGLVEGNQYTLGSLVTACTKLGALHQGKWVHGY 263

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V K GFD  S  V + L D+Y KC  I  + +VF+      L    +++      G  ++
Sbjct: 264 VIKSGFDLNSFLV-TPLLDLYFKCGDIRDAFSVFDELSTIDLVSWTAMIVGYAQRGYPRE 322

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+++F     + +  + VT S+ L A + + S N+G  R +HC  IK G E +     +L
Sbjct: 323 ALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMG--RSVHCLGIKLGSE-DATFENAL 379

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++C  I  +  VFE +   +V+ + SI++GY++NG   EAL++ + M    + PD 
Sbjct: 380 VDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNGYAYEALELFDQMRSDSVYPDA 439

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +T + VL+ C   G  + G  +         +       + +++   + G  + A  +  
Sbjct: 440 ITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVGTALLNFYAKCGDAESARVIFD 499

Query: 579 QTPGGGDCMMWSSLLRSCRVHGN 601
           +  G  + + WS+++    + G+
Sbjct: 500 EM-GEKNTITWSAMIGGYGIQGD 521



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 183/389 (47%), Gaps = 19/389 (4%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+ +L   CT +  L     +  Y  +    LN +     +D + K G +  A  +FDE+
Sbjct: 240 TLGSLVTACTKLGALHQGKWVHGYVIKSGFDLNSFLVTPLLDLYFKCGDIRDAFSVFDEL 299

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
              D+V++  +I G  +  +P++AL L+ +     +  +  T SSVLS C+  G    G 
Sbjct: 300 STIDLVSWTAMIVGYAQRGYPREALKLFTDERWKDLLPNTVTTSSVLSACAQTGSLNMGR 359

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            +HC  + LG   +    + LVD+Y +      A  +F+ + ++++  WN ++  + +  
Sbjct: 360 SVHCLGIKLG-SEDATFENALVDMYAKCHMIGDARYVFETVFDKDVIAWNSIISGYTQNG 418

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E L ++++M+++ V P+ ++   ++  C+       G  LH + IK G +  +++V 
Sbjct: 419 YAYEALELFDQMRSDSVYPDAITLVSVLSACASVGAYRVGSSLHGYAIKAGLLSGSVYVG 478

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            AL++FY+ CG    A+  FD +   + I+W++++  Y        +LELF  M   +  
Sbjct: 479 TALLNFYAKCGDAESARVIFDEMGEKNTITWSAMIGGYGIQGDCSRSLELFGDMLKEKLE 538

Query: 311 PSIRSFVEFLNFASRTGNV-----YFGK--QIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           P+   F   L+  S +G +     YF    Q++ +V        S+   + + D+  +  
Sbjct: 539 PNEVIFTTILSACSHSGMLGEGWRYFNTMCQVYNFVP-------SMKHYACMVDLLARAG 591

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLH 392
            +E ++   E  P   ++   SL+ + LH
Sbjct: 592 RLEEALDFIEKIP---IQPDVSLLGAFLH 617


>gi|225428104|ref|XP_002278241.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic [Vitis vinifera]
 gi|297744563|emb|CBI37825.3| unnamed protein product [Vitis vinifera]
          Length = 802

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 167/625 (26%), Positives = 329/625 (52%), Gaps = 5/625 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           + N  S  R +  +V+ G++ +A  LF+ M   D   +N++I G         A+  Y  
Sbjct: 57  ERNSVSLTRALSSYVERGYMKNALDLFENMRQCDTFIWNVMIRGFVDNGLFWDAVDFYHR 116

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G++    T+  V+  C       EG ++H +V+  G  L++YIG+ L+ +Y ++G 
Sbjct: 117 MEFGGVRGDNFTYPFVIKACGGLYDLAEGERVHGKVIKSGLDLDIYIGNSLIIMYAKIGC 176

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F E+P R+L +WN M+  +  +      L  + +M+A G++ +  S   ++  
Sbjct: 177 IESAEMVFREMPVRDLVSWNSMISGYVSVGDGWRSLSCFREMQASGIKLDRFSVIGILGA 236

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS+   L  GK++H  +++   +++++ V  +LVD Y+ CG +  A++ FD I    +++
Sbjct: 237 CSLEGFLRNGKEIHCQMMR-SRLELDVMVQTSLVDMYAKCGRMDYAERLFDQITDKSIVA 295

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           WN+++  Y+     F++     +MQ   K  P   + +  L   ++   +  GK +HG+ 
Sbjct: 296 WNAMIGGYSLNAQSFESFAYVRKMQEGGKLHPDWITMINLLPPCAQLEAILLGKSVHGFA 355

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + GF    V +++AL DMYG+C  ++ +  +F     R+L   N+++ S   +G  + A
Sbjct: 356 IRNGFLPHLV-LETALVDMYGECGKLKPAECLFGQMNERNLISWNAMIASYTKNGENRKA 414

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  + ++ +  D  T+++ L A +  AS  L     +H    K   +SN  VS S++
Sbjct: 415 MTLFQDLCNKTLKPDATTIASILPAYAELAS--LREAEQIHGYVTKLKLDSNTFVSNSIV 472

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y +CG++  + ++F+++   +V+ + +++  Y+ +G GR ++++   M ++G  P+  
Sbjct: 473 FMYGKCGNLLRAREIFDRMTFKDVISWNTVIMAYAIHGFGRISIELFSEMREKGFEPNGS 532

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ +L  C+ +G+V EG   FNSMK  Y I+   +HY C++D++GR G LD A+  +++
Sbjct: 533 TFVSLLLSCSVAGLVNEGWEYFNSMKRDYNINPGIEHYGCILDLIGRTGNLDHAKNFIEE 592

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P      +W SLL + R  G+  +    A  ++ LE  +   Y  +SN Y+E G +E  
Sbjct: 593 MPLAPTARIWGSLLTASRNKGDVELAEIAAEHILSLEHDNTGCYVLLSNMYAEAGRWEDV 652

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
            +I+       L + +G S+++++S
Sbjct: 653 ERIKFHMKKEGLEKSVGCSVVDLSS 677


>gi|255561624|ref|XP_002521822.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539035|gb|EEF40632.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 793

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 172/621 (27%), Positives = 326/621 (52%), Gaps = 12/621 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G + +A+KLFD M  R +++YN+LISG G      +A+ L+ E     +K    ++
Sbjct: 54  YSKWGEMGNAQKLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSY 113

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           + VLS C     +  G  IH   +  G G  +++ + L+D+Y +      A  LF+   E
Sbjct: 114 AGVLSACGQIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHARLLFESSDE 173

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM--LLDEGK 231
            +  +WN ++  +  +   +E+L++  KM   G+  N  +    ++ C + +  ++  GK
Sbjct: 174 LDNVSWNSLITGYARVGAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGK 233

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA-- 289
            LH + +K G +D++I V  AL+D Y+  G L +A + F   P  +V+ +N++++ +   
Sbjct: 234 TLHGYTVKQG-LDLDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQT 292

Query: 290 ---DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
              D +  ++AL+LF +MQ    +PS  +F   +   +      +GKQIH ++ K     
Sbjct: 293 EDIDKECAYEALKLFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQS 352

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
               + S L ++Y      E  +  F S P   +    +++     +G  + A+ +F  +
Sbjct: 353 DEF-IGSTLIELYSLLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYEL 411

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           +  G   DE  ++T L A +  A+   G    +H  A+K+G  +   V  S +  Y++ G
Sbjct: 412 LASGKKPDEFIITTMLSACADVAAERSG--EQVHGYAVKTGIGTLAIVQNSQISMYAKSG 469

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +++ +   FE+I +P+VV ++ ++   +++G  ++A+++ E+M   G+ P+++TFL VL 
Sbjct: 470 NLDSAKITFEEIKNPDVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLT 529

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H G+V+EG   + SMK  Y +  + +H +C++D+L RAG L  A+  +  +  G   
Sbjct: 530 ACSHGGLVEEGLRYYESMKKDYDMKINVKHCTCIVDLLSRAGRLLDAKNFILNSGFGDHP 589

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
           +MW +LL  CR++ + + G+ VA  L+EL+P + + Y  + N Y++ G    + +IRE  
Sbjct: 590 VMWRTLLSGCRIYKDIVTGKHVAEKLIELDPQESSSYVLLYNIYTDAGIDLPATKIRELM 649

Query: 647 LARKLTRDIGHSLIEV-NSCH 666
             R + ++ G S IEV N  H
Sbjct: 650 KDRGIRKEPGQSWIEVGNEVH 670



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 115/498 (23%), Positives = 234/498 (46%), Gaps = 15/498 (3%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
            ++ ++   S +G    G   H  ++   F   L++ +  ++LY + G    A  LFD +
Sbjct: 11  AYTKLVQFSSKSGSSIHGKLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQKLFDRM 70

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            ER++ ++N+++  +  +    + + ++++ +   ++ +  S+  ++  C        GK
Sbjct: 71  SERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSACGQIKDFALGK 130

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +H   I  G +   +F+ N L+D Y  C  +  A+  F+     D +SWNS+++ YA  
Sbjct: 131 VIHGLAIVCG-LGQQVFLTNLLIDMYCKCERIDHARLLFESSDELDNVSWNSLITGYARV 189

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLN--FASRTGNVYFGKQIHGYVTKLGFDHGSV 349
               + L+L  +M     R +  +    L   + +    V +GK +HGY  K G D   V
Sbjct: 190 GAYEEMLKLLVKMHHTGLRLNAFTLGSALKSCYLNLNNMVSYGKTLHGYTVKQGLDLDIV 249

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK-----DAVEMFG 404
            V +AL DMY K   +  ++ +F ++P +++   N+++   + + +I      +A+++F 
Sbjct: 250 -VGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALKLFS 308

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  +GI   + T S+ +K  +   +   G     H C  K   +S+  +  +L++ YS 
Sbjct: 309 QMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHIC--KHNIQSDEFIGSTLIELYSL 366

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G  E   + F   P  ++V +T+++ GY++NG    AL +   ++  G  PD+     +
Sbjct: 367 LGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTM 426

Query: 525 LAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           L+ C      + G+ V   ++K+  G  A  Q  +  I M  ++G LD A+   ++    
Sbjct: 427 LSACADVAAERSGEQVHGYAVKTGIGTLAIVQ--NSQISMYAKSGNLDSAKITFEEIK-N 483

Query: 584 GDCMMWSSLLRSCRVHGN 601
            D + WS ++ S   HG+
Sbjct: 484 PDVVSWSVMICSNAQHGH 501



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 85/315 (26%), Positives = 154/315 (48%), Gaps = 11/315 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH-----PKQALY 96
           L+I      +D + K+G+L  A +LF   P +++V YN +I+G  +          +AL 
Sbjct: 246 LDIVVGTALLDMYAKTGYLGDAIQLFRTSPNQNVVMYNAMIAGFIQTEDIDKECAYEALK 305

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L+ +M   GIK S  TFSS++ +C++   +  G QIH  +       + +IGS L++LY 
Sbjct: 306 LFSQMQRQGIKPSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYS 365

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
            +G +   L  F+  P+ ++ +W  M+  + +  + +  L ++ ++ A G +P+      
Sbjct: 366 LLGSTEDQLKCFNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITT 425

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           M+  C+       G+Q+H + +K G   + I V N+ +  Y+  G+L  AK +F+ I   
Sbjct: 426 MLSACADVAAERSGEQVHGYAVKTGIGTLAI-VQNSQISMYAKSGNLDSAKITFEEIKNP 484

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YF 331
           DV+SW+ ++   A +    DA+ LF  M+     P+  +F+  L   S  G V     Y+
Sbjct: 485 DVVSWSVMICSNAQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYY 544

Query: 332 GKQIHGYVTKLGFDH 346
                 Y  K+   H
Sbjct: 545 ESMKKDYDMKINVKH 559



 Score = 96.3 bits (238), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 66/291 (22%), Positives = 138/291 (47%), Gaps = 11/291 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T +++   C  I        + ++ C+ N Q + +  +  I+ +   G      K 
Sbjct: 317 PSDFTFSSIIKICNHIEAFEYGKQIHAHICKHNIQSDEFIGSTLIELYSLLGSTEDQLKC 376

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F+  P  D+V++  +I+G  +    + AL L+ E+++ G K      +++LS C++    
Sbjct: 377 FNSTPKLDIVSWTTMIAGYAQNGQFESALALFYELLASGKKPDEFIITTMLSACADVAAE 436

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G Q+H   +  G G    + +  + +Y + G    A   F+E+   ++ +W++M+ + 
Sbjct: 437 RSGEQVHGYAVKTGIGTLAIVQNSQISMYAKSGNLDSAKITFEEIKNPDVVSWSVMICSN 496

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +     + + ++  MK+ G+ PN ++F  ++  CS G L++EG + +  + K   + +N
Sbjct: 497 AQHGHAKDAINLFELMKSYGIHPNQITFLGVLTACSHGGLVEEGLRYYESMKKDYDMKIN 556

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPV----DDVISWNSIVS---IYAD 290
           +     +VD  S  G L++AK   +FI      D  + W +++S   IY D
Sbjct: 557 VKHCTCIVDLLSRAGRLLDAK---NFILNSGFGDHPVMWRTLLSGCRIYKD 604



 Score = 45.8 bits (107), Expect = 0.071,   Method: Compositional matrix adjust.
 Identities = 44/183 (24%), Positives = 89/183 (48%), Gaps = 8/183 (4%)

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           LD V  +  ++  S S S+  G  +L H   IK+ F   + +  + ++ YS+ G +  + 
Sbjct: 7   LDSVAYTKLVQFSSKSGSSIHG--KLAHAHMIKTAFNPCLFLLNNFLNLYSKWGEMGNAQ 64

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           ++F+++   +V+ +  +++GY   G   +A+ +        L  DK ++  VL+ C   G
Sbjct: 65  KLFDRMSERSVISYNILISGYGGMGFYHKAIGLFSEARMACLKLDKFSYAGVLSAC---G 121

Query: 533 MVKEGQL--VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
            +K+  L  V + +  V G+       + +IDM  +   +D A  LL ++    D + W+
Sbjct: 122 QIKDFALGKVIHGLAIVCGLGQQVFLTNLLIDMYCKCERIDHA-RLLFESSDELDNVSWN 180

Query: 591 SLL 593
           SL+
Sbjct: 181 SLI 183


>gi|115464255|ref|NP_001055727.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|53749358|gb|AAU90217.1| unknow protein [Oryza sativa Japonica Group]
 gi|113579278|dbj|BAF17641.1| Os05g0455900 [Oryza sativa Japonica Group]
 gi|222631826|gb|EEE63958.1| hypothetical protein OsJ_18783 [Oryza sativa Japonica Group]
          Length = 874

 Score =  286 bits (731), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 332/622 (53%), Gaps = 17/622 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K G +    ++F+ MP +++VT+  L++GC   +   + + L+  M + GI  + 
Sbjct: 142 VDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNP 201

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF+SVLS  ++ G    G ++H + +  G   ++++ + L+++Y + G    A  +F+ 
Sbjct: 202 FTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW 261

Query: 171 LPERNLATWNLMLRAF----CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +  R++ +WN ++       CEL    E L+++++ +A   +    ++  +++ C+    
Sbjct: 262 METRDMVSWNTLMAGLQLNECEL----EALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIV 285
           L   +QLHS V+K G+  +   V  AL D YS CG L +A   F       +V+SW +I+
Sbjct: 318 LALARQLHSCVLKHGF-HLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAII 376

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S       I  A+ LF RM+  R  P+  ++   L    +        QIH  V K  + 
Sbjct: 377 SGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML----KASLSILPPQIHAQVIKTNYQ 432

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           H    V +AL   Y K    E ++++F+    + +   +++++    +G+ + A  +F  
Sbjct: 433 HIPF-VGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNK 491

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  +GI  +E T+S+ + A +   SA +   R  H  +IK  +   I VS +L+  YSR 
Sbjct: 492 MAIQGIKPNEFTISSVIDACACP-SAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRK 550

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G+I+ +  VFE+    ++V + S+++GY+++G   +A++    M   G+  D VTFL V+
Sbjct: 551 GNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVI 610

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
            GC H+G+V EGQ  F+SM   + I+   +HY+CM+D+  RAG LD+   L++  P    
Sbjct: 611 MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAG 670

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
            M+W +LL +CRVH N  +G+  A+ L+ LEP D + Y  +SN Y+  G+++   ++R+ 
Sbjct: 671 AMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKL 730

Query: 646 ALARKLTRDIGHSLIEV-NSCH 666
              RK+ ++ G S I++ N  H
Sbjct: 731 MDYRKVKKEAGCSWIQIKNKVH 752



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 134/543 (24%), Positives = 270/543 (49%), Gaps = 16/543 (2%)

Query: 63  AKKLFDEMPARDM-VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           A+   DE+P RD  V  N ++    +     + L  +      G+   ++T S VL  C 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVLEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 122 NAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           +      G Q+HC  +  G     +  G+ LVD+YM+ G     +++F+ +P++N+ TW 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            +L          EV+ ++ +M+AEG+ PN  +F  ++   +    LD G+++H+  +K 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G    ++FV N+L++ Y+ CG + +AK  F+++   D++SWN++++     +   +AL+L
Sbjct: 231 G-CRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQL 289

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F   +    + +  ++   +   +    +   +Q+H  V K GF H + +V +AL D Y 
Sbjct: 290 FHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF-HLTGNVMTALADAYS 348

Query: 361 KCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           KC  +  ++ +F    G R++    ++++  + +G+I  AV +F  M ++ +  +E T S
Sbjct: 349 KCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYS 408

Query: 420 TTLKA-LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
             LKA LS+           +H   IK+ ++    V  +L+ +YS+ G  E +  +F+ I
Sbjct: 409 AMLKASLSILPPQ-------IHAQVIKTNYQHIPFVGTALLASYSKFGSTEDALSIFKMI 461

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-HSGMVKEG 537
              +VV ++++++ +++ G    A  +   M  +G+ P++ T   V+  C   S  V +G
Sbjct: 462 EQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQG 521

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           +  F+++   Y         S ++ M  R G +D A+ + ++     D + W+S++    
Sbjct: 522 RQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQT-DRDLVSWNSMISGYA 579

Query: 598 VHG 600
            HG
Sbjct: 580 QHG 582



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 121/446 (27%), Positives = 210/446 (47%), Gaps = 19/446 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  ++ + K G +  AK +F+ M  RDMV++N L++G        +AL L+ E  
Sbjct: 235 SVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESR 294

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +   K + ST+++V+ +C+N        Q+H  VL  GF L   + + L D Y + G   
Sbjct: 295 ATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELA 354

Query: 163 RALDLFD-ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            AL++F      RN+ +W  ++    +       + ++++M+ + V PN  ++  M++  
Sbjct: 355 DALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA- 413

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S+ +L     Q+H+ VIK  +  +  FV  AL+  YS  GS  +A   F  I   DV++W
Sbjct: 414 SLSIL---PPQIHAQVIKTNYQHIP-FVGTALLASYSKFGSTEDALSIFKMIEQKDVVAW 469

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGYVT 340
           ++++S +A       A  LF +M +   +P+  +    ++  A  +  V  G+Q H    
Sbjct: 470 SAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISI 529

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K  + H ++ V SAL  MY +   I+S+  VFE    R L   NS+++     G    A+
Sbjct: 530 KYRY-HDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAI 588

Query: 401 EMFGFMVDEGIGLDEVT-----LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
           E F  M   GI +D VT     +  T   L V       S    H   I    E     +
Sbjct: 589 ETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDH--KINPTMEH---YA 643

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSP 481
           C ++D YSR G ++ +  +   +P P
Sbjct: 644 C-MVDLYSRAGKLDETMSLIRDMPFP 668


>gi|218191314|gb|EEC73741.1| hypothetical protein OsI_08374 [Oryza sativa Indica Group]
          Length = 667

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 179/615 (29%), Positives = 311/615 (50%), Gaps = 14/615 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYN--LLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           +   G  +SA  L  +MP    V+++  LL S  G   H ++AL +Y  M +        
Sbjct: 55  YCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCH-REALAVYSAMRAF----DHL 109

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TF      C+       G  +HCR L+ GFG + Y+ + L+ +YM  G    A  +F  +
Sbjct: 110 TFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAM 169

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             R + +WN ++    +    +  L ++ +M A+GV  +  +   ++  C+    L+ G+
Sbjct: 170 RNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGR 229

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYAD 290
            +H  V   G  D  + V NAL+D Y  C SL +A++ FD    D DV+SW +++  Y  
Sbjct: 230 AVHRLVEDKGLGDY-VAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVL 288

Query: 291 YDLIFDALELFFRMQLC-RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
            D  F+A+ L  +M +     P+  + V  L+  +   +    K  H    +LG     +
Sbjct: 289 NDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLK-SDI 347

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V++AL D Y +C  ++      E    R+ E  N+ ++    SG  K A+E+F  M+ E
Sbjct: 348 AVETALIDAYARCGKMKLMRLTLERGSWRA-ETWNAALSGYTVSGREKKAIELFKRMIAE 406

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  D  T+++ L A +   SA+L   + +HC  +  GF  +  ++  L+D YS+ G ++
Sbjct: 407 SVRPDSATMASILPAYA--ESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLD 464

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +  +F+ +P  +VV +T+I+ GYS +G  R A+ + + M++ G  P+ VT   +L  C+
Sbjct: 465 AAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNTVTIATLLYACS 524

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+GM+ EG  VF  M++V+G+  + +HYSC++DMLGRAG +++A  L+Q  P      +W
Sbjct: 525 HAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVW 584

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +C +H N   G   A  L +L+P +   Y  + N Y+    +     +R   + R
Sbjct: 585 GALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVER 644

Query: 650 KLTRDIGHSLIEVNS 664
            L ++ G SL+E  S
Sbjct: 645 GLLKEPGSSLVEARS 659



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 113/444 (25%), Positives = 210/444 (47%), Gaps = 16/444 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N  I  ++  G + +A+ +F  M  R +V++N +I+GC K  + ++AL ++ EM 
Sbjct: 142 DTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMA 201

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G+    +T  SVL  C+ A     G  +H  V   G G  + + + L+D+Y +     
Sbjct: 202 ADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLE 261

Query: 163 RALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRG 220
            A  +FD    ++++ +W  M+ A+    R  E + +  +M   G   PNG++  Y++  
Sbjct: 262 DARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSA 321

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+        K  H+  I+LG +  +I V  AL+D Y+ CG +   + + +        +
Sbjct: 322 CASMPSGKHAKCTHALCIRLG-LKSDIAVETALIDAYARCGKMKLMRLTLERGSW-RAET 379

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+ +S Y        A+ELF RM     RP   +    L   + + ++  GK IH ++ 
Sbjct: 380 WNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLL 439

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            LGF   S  + + L D+Y K   ++++ A+F+  P + +    +++      G+ + A+
Sbjct: 440 TLGFLR-STEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAI 498

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG-----SCRLLHCCAIKSGFESNIAVS 455
            ++  MV+ G   + VT++T L A S +   + G       R +H      G   N    
Sbjct: 499 LLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVH------GLMPNGEHY 552

Query: 456 CSLMDAYSRCGHIELSHQVFEKIP 479
             L+D   R G IE +H++ + +P
Sbjct: 553 SCLVDMLGRAGRIEEAHRLIQDMP 576



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 218/455 (47%), Gaps = 14/455 (3%)

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATW-NLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           PL  +Y   G    A +L  ++P+    ++ N +LR++  L    E L +Y+ M+A    
Sbjct: 50  PLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAF--- 106

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            + L+F +  + C+   L   G+ +H   +  G+   + +V NAL+  Y +CG +  A+ 
Sbjct: 107 -DHLTFPFAAKACAGLRLGRHGRAVHCRALAAGF-GGDTYVQNALISMYMSCGDVGAAEA 164

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +    V+SWN++++          ALE+F  M          + V  L   ++  +
Sbjct: 165 VFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKD 224

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP-GRSLECCNSLM 387
           +  G+ +H  V   G     V V++AL DMYGKC  +E +  VF+     + +    +++
Sbjct: 225 LNTGRAVHRLVEDKGLGD-YVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMI 283

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
            + + +    +A+ +   M+  G    + VT+   L A +   S     C   H   I+ 
Sbjct: 284 GAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKC--THALCIRL 341

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G +S+IAV  +L+DAY+RCG ++L     E+  S     + + ++GY+ +G  ++A+++ 
Sbjct: 342 GLKSDIAVETALIDAYARCGKMKLMRLTLER-GSWRAETWNAALSGYTVSGREKKAIELF 400

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
           + MI   + PD  T   +L     S  +KEG+ +   + ++ G     +  + +ID+  +
Sbjct: 401 KRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTL-GFLRSTEIATGLIDVYSK 459

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           AG LD A  L Q  P   D + W++++    +HG+
Sbjct: 460 AGDLDAAWALFQWLP-EKDVVAWTTIIAGYSIHGH 493



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 46/137 (33%), Positives = 74/137 (54%), Gaps = 2/137 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID + K+G L++A  LF  +P +D+V +  +I+G     H + A+ LYD MV  G K + 
Sbjct: 454 IDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYSIHGHARTAILLYDRMVESGGKPNT 513

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            T +++L  CS+AG   EGI++   + ++ G   N    S LVD+  R G    A  L  
Sbjct: 514 VTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQ 573

Query: 170 ELP-ERNLATWNLMLRA 185
           ++P E + + W  +L A
Sbjct: 574 DMPFEPSTSVWGALLGA 590


>gi|357116106|ref|XP_003559825.1| PREDICTED: pentatricopeptide repeat-containing protein At4g32430,
           mitochondrial-like [Brachypodium distachyon]
          Length = 739

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 184/630 (29%), Positives = 330/630 (52%), Gaps = 27/630 (4%)

Query: 45  YSSNRTIDDFVKSGH-LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           + +N     + KS     SA K+F    ARD+ +YN ++S         +AL     M+ 
Sbjct: 73  FVTNSLAARYAKSASSFPSAAKVFHTARARDVSSYNTILSA---LPDRGEALAFAAWMLR 129

Query: 104 HG-IKESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            G ++  A T +  LS+ ++ G   +G+    Q+H      G   ++++G+ LV  Y R 
Sbjct: 130 SGDVRPDAVTLTVALSLAASRG-EADGVWIVRQLHALASRSGLVADVFVGNALVTAYSRG 188

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSR----PDEVLRMYNKMKAEG---VEPNG 211
                A  +FDE+P R+L +WN M+   C L++    P EV+ ++ ++  +G   V P+ 
Sbjct: 189 ALLGAARRVFDEMPARDLVSWNAMI---CGLAQDGDCPTEVILVFLRLLKDGGAAVRPDR 245

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           +S C ++  C     ++ G+Q+HS  +KLG V+  + + N LV  Y   G+   A+K   
Sbjct: 246 ISVCSVIPACGSEGKIELGRQVHSFTVKLG-VEGKVSIGNVLVAMYYKSGAAGCARKLLK 304

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +   DVISW + +S+  + D    A+ELF  M+     P+  +FV  ++  +      +
Sbjct: 305 SMDERDVISWTTAISMDGEED----AIELFNGMRQDGVPPNEVTFVALMSALAAGCPARY 360

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+ IH    K G    +    S +T MY K   ++ +  VF+  P   +   N+L++   
Sbjct: 361 GQMIHTVCLKTGVSDEAAAANSLIT-MYAKLRRMDDARTVFDRMPRPEIIAWNALISGYA 419

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            +    +A+++F  MV   +  +E T ++ L A++   + ++    + HC ++K G + +
Sbjct: 420 QNELCNEALQVFSCMV-RCLRPNETTFASVLSAVTAVETVSMAYGEMYHCQSLKLGLKVS 478

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             VS +L+D Y++ G +E S + F+     +++ +T+I++ ++++G     +++ + M+ 
Sbjct: 479 EYVSGALIDMYAKRGSLEESRKAFDVTVHRSLIAWTAIISAHAKHGNYDTVMNLFDDMVC 538

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G+ PD V  L VL  C HSG V  G+ +F+SM + + ++   +HY+C+IDMLGRAG L+
Sbjct: 539 SGVAPDGVVLLSVLTACRHSGAVNTGREIFDSMPAEHHVEPWPEHYACVIDMLGRAGRLE 598

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +AEEL+ Q P G       SLL +CR+HGN  I  RVA IL E EP +   Y  +SN Y+
Sbjct: 599 EAEELMLQMPTGPSVSALQSLLGACRIHGNTSIAERVAGILTETEPTESGAYVLLSNIYA 658

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           E G++    ++R     + + ++IG S ++
Sbjct: 659 EKGDWGGVAKVRREMREKGVRKEIGFSWVD 688



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 119/457 (26%), Positives = 224/457 (49%), Gaps = 15/457 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEM 101
           +++  N  +  + +   L +A+++FDEMPARD+V++N +I G  +    P + + ++  +
Sbjct: 174 DVFVGNALVTAYSRGALLGAARRVFDEMPARDLVSWNAMICGLAQDGDCPTEVILVFLRL 233

Query: 102 VSHG---IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +  G   ++    +  SV+  C + G    G Q+H   + LG    + IG+ LV +Y + 
Sbjct: 234 LKDGGAAVRPDRISVCSVIPACGSEGKIELGRQVHSFTVKLGVEGKVSIGNVLVAMYYKS 293

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G +  A  L   + ER++ +W   +    E    ++ + ++N M+ +GV PN ++F  ++
Sbjct: 294 GAAGCARKLLKSMDERDVISWTTAISMDGE----EDAIELFNGMRQDGVPPNEVTFVALM 349

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
              + G     G+ +H+  +K G  D     AN+L+  Y+    + +A+  FD +P  ++
Sbjct: 350 SALAAGCPARYGQMIHTVCLKTGVSD-EAAAANSLITMYAKLRRMDDARTVFDRMPRPEI 408

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN--FASRTGNVYFGKQIH 336
           I+WN+++S YA  +L  +AL++F  M  C  RP+  +F   L+   A  T ++ +G+  H
Sbjct: 409 IAWNALISGYAQNELCNEALQVFSCMVRC-LRPNETTFASVLSAVTAVETVSMAYGEMYH 467

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
               KLG    S +V  AL DMY K   +E S   F+    RSL    +++++    GN 
Sbjct: 468 CQSLKLGLKV-SEYVSGALIDMYAKRGSLEESRKAFDVTVHRSLIAWTAIISAHAKHGNY 526

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
              + +F  MV  G+  D V L + L A   S + N G   +      +   E       
Sbjct: 527 DTVMNLFDDMVCSGVAPDGVVLLSVLTACRHSGAVNTGR-EIFDSMPAEHHVEPWPEHYA 585

Query: 457 SLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNG 492
            ++D   R G +E + ++  ++P+ P+V    S++  
Sbjct: 586 CVIDMLGRAGRLEEAEELMLQMPTGPSVSALQSLLGA 622



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 63/266 (23%), Positives = 132/266 (49%), Gaps = 13/266 (4%)

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGK-CNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           +HG     G D  S  V ++L   Y K  +   S+  VF +A  R +   N+++++L   
Sbjct: 59  LHGLAIASGLDAFSF-VTNSLAARYAKSASSFPSAAKVFHTARARDVSSYNTILSALPDR 117

Query: 394 GNIKDAVEMFGFMVDEG-IGLDEVTLSTTLK-ALSVSASANLGSCRLLHCCAIKSGFESN 451
           G   +A+    +M+  G +  D VTL+  L  A S   +  +   R LH  A +SG  ++
Sbjct: 118 G---EALAFAAWMLRSGDVRPDAVTLTVALSLAASRGEADGVWIVRQLHALASRSGLVAD 174

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG-MGREALDMLEVMI 510
           + V  +L+ AYSR   +  + +VF+++P+ ++V + +++ G +++G    E + +   ++
Sbjct: 175 VFVGNALVTAYSRGALLGAARRVFDEMPARDLVSWNAMICGLAQDGDCPTEVILVFLRLL 234

Query: 511 QRG---LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
           + G   + PD+++   V+  C   G ++ G+ V +S     G++      + ++ M  ++
Sbjct: 235 KDGGAAVRPDRISVCSVIPACGSEGKIELGRQV-HSFTVKLGVEGKVSIGNVLVAMYYKS 293

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLL 593
           G    A +LL+      D + W++ +
Sbjct: 294 GAAGCARKLLKSM-DERDVISWTTAI 318



 Score = 50.4 bits (119), Expect = 0.003,   Method: Compositional matrix adjust.
 Identities = 39/142 (27%), Positives = 60/142 (42%), Gaps = 18/142 (12%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +++ Y S   ID + K G L  ++K FD    R ++ +  +IS   K  +    + L+D+
Sbjct: 476 KVSEYVSGALIDMYAKRGSLEESRKAFDVTVHRSLIAWTAIISAHAKHGNYDTVMNLFDD 535

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQI-----------------HCRVLSLGFGL 143
           MV  G+        SVL+ C ++G    G +I                  C +  LG   
Sbjct: 536 MVCSGVAPDGVVLLSVLTACRHSGAVNTGREIFDSMPAEHHVEPWPEHYACVIDMLGRAG 595

Query: 144 NLYIGSPLVDLYMRMGPSVRAL 165
            L     L+ L M  GPSV AL
Sbjct: 596 RLEEAEELM-LQMPTGPSVSAL 616


>gi|302791495|ref|XP_002977514.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
 gi|300154884|gb|EFJ21518.1| hypothetical protein SELMODRAFT_107304 [Selaginella moellendorffii]
          Length = 673

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 173/533 (32%), Positives = 293/533 (54%), Gaps = 9/533 (1%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEG---IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           G + +A  F+ +L  C+ +   ++     +I  RV++ GF  ++ + + L+    R G  
Sbjct: 5   GCRPNAVIFTRLLEACARSPEKSDRSRLAEIQFRVVATGFDADVTVATALISALARCGDL 64

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A + FD +P +N+ +WN M+ A  E       L +Y +M+ EGV+P+ +S+ + +  C
Sbjct: 65  EGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSDISYIHALCSC 124

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S    L++GK +H  V   G+ D  +FV NALV+ YS C  L  A+++F+ I   DV+SW
Sbjct: 125 SGLRDLEQGKSIHDRVATDGF-DTQVFVGNALVNMYSKCRRLDLAREAFERIDSKDVVSW 183

Query: 282 NSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           NS+++ ++      +ALE + RM    R  P+  + V  L  A    +    K +     
Sbjct: 184 NSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHALGAALSLRSAGDTKLLQEDAI 243

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           +LG + G + V SAL    GKC  ++ + AVF+    R++   + L+ +L   G  +DA+
Sbjct: 244 RLGLE-GDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAALAEHGRGRDAI 302

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           E+F  M  +GI  +EVTL + L+A + + +   G  R  H      GFE+   V+ +L++
Sbjct: 303 ELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEG--RRTHARVSGCGFEAETNVANALVN 360

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +CGH+  +  VF+ +   NVV +T+++ GY+ +G   EA  + + M   G+ P+ +T
Sbjct: 361 MYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMALEGIQPNVIT 420

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ VL  C+H+G+V +G   F+ M   +GI    +HY C+ID+LGRAG L++AEELL+  
Sbjct: 421 FVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVIDLLGRAGWLEEAEELLRTM 480

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFAVYSQVSNFYSE 632
           P   D   W+SLL +C+VH +    +R+A +  +L  P   A Y  +SN Y++
Sbjct: 481 PVEPDKAAWNSLLGACKVHSHTDRAKRIAKLACDLALPFASAPYVLLSNMYTD 533



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 118/445 (26%), Positives = 223/445 (50%), Gaps = 7/445 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I    + G L  A++ FD +PA+++V++N +I+   +  H  +AL +Y  M   G+K S 
Sbjct: 55  ISALARCGDLEGAREAFDRIPAKNVVSWNSMIAALNEHGHFARALEIYRRMEPEGVKPSD 114

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            ++   L  CS      +G  IH RV + GF   +++G+ LV++Y +      A + F+ 
Sbjct: 115 ISYIHALCSCSGLRDLEQGKSIHDRVATDGFDTQVFVGNALVNMYSKCRRLDLAREAFER 174

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGML-LD 228
           +  +++ +WN M+ A  +L   DE L  Y +M   E +EP  ++  + + G ++ +    
Sbjct: 175 IDSKDVVSWNSMIAAHSQLGGSDEALETYRRMIGEERLEPTKITLVHAL-GAALSLRSAG 233

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           + K L    I+LG ++ ++ V +ALV     CG L +A+  FD +   +V+SW+ +++  
Sbjct: 234 DTKLLQEDAIRLG-LEGDLLVGSALVSALGKCGCLDQARAVFDRMERRNVVSWSGLIAAL 292

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           A++    DA+ELF RM L   +P+  + +  L   + TG +  G++ H  V+  GF+   
Sbjct: 293 AEHGRGRDAIELFHRMDLDGIQPNEVTLLSVLEACASTGAIAEGRRTHARVSGCGFE-AE 351

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
            +V +AL +MYGKC  + S+  VF++   R++    +++    H G+ ++A  +F  M  
Sbjct: 352 TNVANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEEARRVFKAMAL 411

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           EGI  + +T  + L   S +   + G     H      G          ++D   R G +
Sbjct: 412 EGIQPNVITFVSVLFNCSHAGVVSDG-LEQFHIMVGDFGIVPVTEHYGCVIDLLGRAGWL 470

Query: 469 ELSHQVFEKIP-SPNVVCFTSIMNG 492
           E + ++   +P  P+   + S++  
Sbjct: 471 EEAEELLRTMPVEPDKAAWNSLLGA 495



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 51/167 (30%), Positives = 83/167 (49%), Gaps = 4/167 (2%)

Query: 34  SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           S C    + N+  +N  ++ + K GHL SA+ +FD M  R++V++  +++G     H ++
Sbjct: 344 SGCGFEAETNV--ANALVNMYGKCGHLGSARTVFDAMTWRNVVSWTAMLAGYAHHGHTEE 401

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI-QIHCRVLSLGFGLNLYIGSPLV 152
           A  ++  M   GI+ +  TF SVL  CS+AG  ++G+ Q H  V   G          ++
Sbjct: 402 ARRVFKAMALEGIQPNVITFVSVLFNCSHAGVVSDGLEQFHIMVGDFGIVPVTEHYGCVI 461

Query: 153 DLYMRMGPSVRALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRM 198
           DL  R G    A +L   +P E + A WN +L A    S  D   R+
Sbjct: 462 DLLGRAGWLEEAEELLRTMPVEPDKAAWNSLLGACKVHSHTDRAKRI 508


>gi|302763819|ref|XP_002965331.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
 gi|300167564|gb|EFJ34169.1| hypothetical protein SELMODRAFT_82859 [Selaginella moellendorffii]
          Length = 806

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 183/607 (30%), Positives = 320/607 (52%), Gaps = 17/607 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G ++ A   FD+        +N ++S      H ++A+ L+ +M  H  + S  + 
Sbjct: 195 YAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELFFQMEQH--QCSDRSC 252

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +  L  C+ AG    GIQIH ++ S   G  + + + L+ +Y+R G    AL +F ++P 
Sbjct: 253 AIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPH 312

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IG--MLLDEG 230
           RN+ +W  M+ A  +       +++++ M AEG+ PN  ++  +V   + +G   +LD G
Sbjct: 313 RNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRG 372

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIY 288
           +++HS +   G +D +  V N+L++ Y+  G L EA++ FD I  +   V+S+ +++S Y
Sbjct: 373 RKIHSQITASG-IDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSFTTMISAY 431

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           A       ALE+F  M      P+  +F   L      G++  G  IH  + + G D   
Sbjct: 432 AHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSD 491

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
               ++L DMY KC  +  +  VFE+   + L    +++ + + SGN + A++++  M+ 
Sbjct: 492 PFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQ 551

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRC 465
            GI  D  TLST L      A ANLG   +   +H  A++S  E +     +L   Y++C
Sbjct: 552 SGIHPDIATLSTLL-----VACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKC 606

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G +E + +++ +    +V  +TS++  +S+ G+   AL++   M   G+ P++VTF+ VL
Sbjct: 607 GSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVL 666

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             C+ +G+V EG+  F+S+ S YG     +H+ CM+D+LGRAG L  AEELL   P   D
Sbjct: 667 ISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPD 726

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE-FEVSMQIRE 644
            + W SLL SC++H +  IG R A  L+EL+P   + +  +S  Y+  G   ++    RE
Sbjct: 727 EIAWQSLLSSCKLHTDAEIGTRAAECLLELDPESTSQFVALSQIYAAAGRNSDIDEIKRE 786

Query: 645 TALARKL 651
            AL R++
Sbjct: 787 LALRRQI 793



 Score =  207 bits (527), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 150/549 (27%), Positives = 273/549 (49%), Gaps = 16/549 (2%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           ++++L  C N      G ++H  ++S     N  +G  +  +Y R      A+ LFD +P
Sbjct: 53  YANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMP 112

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +R    WN++++ F    RP + L +Y +M  E  +P+   F + +  C     L +G+ 
Sbjct: 113 DRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRS 172

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  V       +N  + +ALV  Y+ CG +  A  +FD         WN+I+S  A   
Sbjct: 173 IHYRVAT--GRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAG 230

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS-VHV 351
               A+ELFF+M+  + + S RS    L   +  G++  G QIH  +      HG+ V V
Sbjct: 231 HHRRAIELFFQME--QHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQ--SEIHGTRVLV 286

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +AL  MY +C  ++ ++ VF   P R++    S++ ++  +G+   +V++F  M+ EGI
Sbjct: 287 LNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGI 346

Query: 412 GLDEVTLSTTLKALS-VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
             +E T ++ + A++ +   A L   R +H     SG +++  V  SL++ Y+R G +  
Sbjct: 347 NPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAE 406

Query: 471 SHQVFEKI--PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           + +VF+ I   S  VV FT++++ Y+ NG  R+AL++   M  RG+ P+++TF  VLA C
Sbjct: 407 AREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAAC 466

Query: 529 NHSGMVKEGQLVFNSMKSVYGID-ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
              G +  G  +   M    G+D +D   Y+ ++DM  + G L  A  +  +T    D +
Sbjct: 467 VAIGDLASGAWIHERMIES-GLDSSDPFAYNSLVDMYAKCGDLGFAARVF-ETMKTKDLV 524

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILME--LEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
            W++++ +    GN      + + +++  + P D A  S +    + +G+  +  +I   
Sbjct: 525 AWTTIIAANVQSGNNRAALDLYDRMLQSGIHP-DIATLSTLLVACANLGDLAMGEKIHRQ 583

Query: 646 ALARKLTRD 654
           AL  KL +D
Sbjct: 584 ALRSKLEQD 592



 Score =  190 bits (482), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 147/541 (27%), Positives = 264/541 (48%), Gaps = 17/541 (3%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
            ++A  LFD MP R    +N+L+        P+  L LY  M     + SA  F   +  
Sbjct: 101 FDTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVA 160

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C       +G  IH RV + G G+N  I S LV +Y + G    A+  FD+  E   A W
Sbjct: 161 CGRIKDLAQGRSIHYRV-ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPW 219

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++ A          + ++ +M  E  + +  S    +  C+    L  G Q+H   I+
Sbjct: 220 NAIMSALAGAGHHRRAIELFFQM--EQHQCSDRSCAIALGACAAAGHLRGGIQIHDK-IQ 276

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                  + V NAL+  Y  CG L EA + F  +P  +V+SW S+++  A       +++
Sbjct: 277 SEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVK 336

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGN---VYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           LF  M      P+ +++   ++  +  G    +  G++IH  +T  G D   + VQ++L 
Sbjct: 337 LFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPI-VQNSLI 395

Query: 357 DMYGKCNVIESSVAVFES--APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           +MY +  ++  +  VF+S     +++    +++++  H+G+ + A+E+F  M   G+  +
Sbjct: 396 NMYARSGLLAEAREVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPN 455

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC-SLMDAYSRCGHIELSHQ 473
           E+T +T L A    A  +L S   +H   I+SG +S+   +  SL+D Y++CG +  + +
Sbjct: 456 EITFATVLAA--CVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAAR 513

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VFE + + ++V +T+I+    ++G  R ALD+ + M+Q G+ PD  T   +L  C + G 
Sbjct: 514 VFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGD 573

Query: 534 VKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  G+ +   +++S    DA  Q  + +  M  + G L+KA  L ++   G D   W+S+
Sbjct: 574 LAMGEKIHRQALRSKLEQDAHFQ--NALAAMYAKCGSLEKATRLYRRCR-GSDVATWTSM 630

Query: 593 L 593
           L
Sbjct: 631 L 631



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 220/451 (48%), Gaps = 10/451 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  +V+ G L+ A ++F +MP R++V++  +I+   +  H   ++ L+D M++ GI 
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQTGHYSFSVKLFDGMIAEGIN 347

Query: 108 ESASTFSSVLSVCSNAG---FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            +  T++SV+S  ++ G       G +IH ++ + G   +  + + L+++Y R G    A
Sbjct: 348 PNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEA 407

Query: 165 LDLFDELPE--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            ++FD + E  + + ++  M+ A+     P + L ++ +M A GV PN ++F  ++  C 
Sbjct: 408 REVFDSILENSKTVVSFTTMISAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACV 467

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G  +H  +I+ G    + F  N+LVD Y+ CG L  A + F+ +   D+++W 
Sbjct: 468 AIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWT 527

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++          AL+L+ RM      P I +    L   +  G++  G++IH    + 
Sbjct: 528 TIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALRS 587

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             +  + H Q+AL  MY KC  +E +  ++    G  +    S++ +    G    A+E+
Sbjct: 588 KLEQDA-HFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALEL 646

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR-LLHCCAIKSGFESNIAVSCSLMDA 461
           +  M  EG+  +EVT    L  +S S +  +   R   H      G + +      ++D 
Sbjct: 647 YAEMESEGVRPNEVTFIPVL--ISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDV 704

Query: 462 YSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
             R G +  + ++ + +P  P+ + + S+++
Sbjct: 705 LGRAGKLRDAEELLDSMPFYPDEIAWQSLLS 735



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 99/393 (25%), Positives = 191/393 (48%), Gaps = 14/393 (3%)

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
           +SR D+ L   +K++        L +  ++R C     LD G+++H+H++    +  N  
Sbjct: 29  ISRLDDALLRLDKLRHRSTS-QLLLYANLLRQCGNQRALDHGRRVHAHIVSRR-LARNAL 86

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           +   +   Y+ C     A   FD +P      WN ++  +   D   D LEL+ RM +  
Sbjct: 87  LGELVFQMYARCRCFDTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVEN 146

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDMYGKCNVIES 367
            +PS   F+  +    R  ++  G+ IH  V T  G +     +QSAL  MY +C  I+ 
Sbjct: 147 TQPSACGFMWAIVACGRIKDLAQGRSIHYRVATGRGINSS---IQSALVTMYAQCGRIDL 203

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           ++A F+          N++M++L  +G+ + A+E+F F +++    D    S  +   + 
Sbjct: 204 AMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELF-FQMEQHQCSDR---SCAIALGAC 259

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           +A+ +L     +H         + + V  +L+  Y RCG ++ + +VF  +P  NVV +T
Sbjct: 260 AAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWT 319

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG---MVKEGQLVFNSM 544
           S++   ++ G    ++ + + MI  G+ P++ T+  V++   H G   ++  G+ + +S 
Sbjct: 320 SMIAAVAQTGHYSFSVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKI-HSQ 378

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            +  GIDAD    + +I+M  R+G+L +A E+ 
Sbjct: 379 ITASGIDADPIVQNSLINMYARSGLLAEAREVF 411



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 3/289 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPN--PQLNIYSSNRTIDDFVKSG 58
           M +  + P   T  T+   C +I  L+S   +      +     + ++ N  +D + K G
Sbjct: 447 MTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCG 506

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            L  A ++F+ M  +D+V +  +I+   +  + + AL LYD M+  GI    +T S++L 
Sbjct: 507 DLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLV 566

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C+N G    G +IH + L      + +  + L  +Y + G   +A  L+      ++AT
Sbjct: 567 ACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVAT 626

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  ML A  +       L +Y +M++EGV PN ++F  ++  CS   L+ EG++    + 
Sbjct: 627 WTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSIT 686

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVS 286
                  +      +VD     G L +A++  D +P   D I+W S++S
Sbjct: 687 SDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLS 735


>gi|108712052|gb|ABF99847.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 1221

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 178/601 (29%), Positives = 310/601 (51%), Gaps = 21/601 (3%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           MP +++V +  ++SG  +   P+ AL ++ +MV  G+  +    ++ L  C++ G    G
Sbjct: 1   MPRKNVVAWTSVMSGYTRNGRPEAALAMFADMVESGVAPNDFACNAALVACADLGALRAG 60

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            Q+H   +  GF  + +IGS L+++Y R G    A ++FD +   ++  +  ++ AFC  
Sbjct: 61  EQVHSLAVRAGFAGDAWIGSCLIEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRN 120

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK-LGWVDVNIF 248
              +       +M  +G++PN  +   ++  C   +    G+Q+H ++IK +G    +++
Sbjct: 121 GEFELAAEALIQMLKQGLKPNEHTMTTILTACPRVL----GQQIHGYLIKKIGLRSQSVY 176

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
            + AL+DFYS  G    AK  FD +   +V+SW S++ +Y     + +AL++F  M    
Sbjct: 177 SSTALIDFYSRNGEFKLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDM---- 232

Query: 309 KRPSIRSFVEFLNFA-----SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
               I   V+   FA        G++  G+Q+H    K       + V +AL  MYG+  
Sbjct: 233 ----ISEGVDPNEFALSIVLGACGSIGLGRQLHCSAIKHDLI-TDIRVSNALLSMYGRTG 287

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           ++E   A+        L    + +++   +G  + A+ +   M  EG   +    S+ L 
Sbjct: 288 LVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLS 347

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           + +  AS + G     HC A+K G +S I    +L++ YS+CG +  +   F+ + + +V
Sbjct: 348 SCADVASLDQG--MQFHCLALKLGCDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDV 405

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
             + S+++G++++G   +AL++   M   G+ PD  TFL VL GCNHSGMV+EG+L F  
Sbjct: 406 TSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRL 465

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M   Y       HY+CMIDMLGR G  D+A  ++   P   D ++W +LL SC++H N  
Sbjct: 466 MIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIWKTLLASCKLHRNLD 525

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           IG+  A+ LMEL   D A Y  +SN Y+  GE+E + ++R       + +D G S IE+N
Sbjct: 526 IGKLAADRLMELSDRDSASYVLMSNIYAMHGEWEDARKVRRRMDETGVKKDAGCSWIEIN 585

Query: 664 S 664
           +
Sbjct: 586 N 586



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 142/538 (26%), Positives = 237/538 (44%), Gaps = 62/538 (11%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG-C--GKFRHPKQALYLYDEMVSHGIK 107
           I+ + + G L +AK++FD M + D+V Y  LIS  C  G+F    +AL    +M+  G+K
Sbjct: 83  IEMYSRCGSLPAAKEVFDRMDSPDVVGYTSLISAFCRNGEFELAAEALI---QMLKQGLK 139

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL---NLYIGSPLVDLYMRMGPSVRA 164
            +  T +++L+ C        G QIH  ++    GL   ++Y  + L+D Y R G    A
Sbjct: 140 PNEHTMTTILTACPR----VLGQQIHGYLIK-KIGLRSQSVYSSTALIDFYSRNGEFKLA 194

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SI 223
             +FD L  +N+ +W  M++ +    R +E L+++  M +EGV+PN  +   ++  C SI
Sbjct: 195 KAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGACGSI 254

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
           G+    G+QLH   IK   +  +I V+NAL+  Y   G + E +   + I   D++SW +
Sbjct: 255 GL----GRQLHCSAIKHDLI-TDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTT 309

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
            +S          A+ L  +M      P+  +F   L+  +   ++  G Q H    KLG
Sbjct: 310 AISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLG 369

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            D   +   +AL +MY KC  + S+   F+      +   NSL+      G+   A+E+F
Sbjct: 370 CD-SEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVF 428

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSC--RLLHCCAIKSGFESNIAVSCSLMDA 461
             M   GI  D+ T    L   + S     G    RL                   ++D 
Sbjct: 429 SKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRL-------------------MIDQ 469

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS           F   PS +  C   ++    RNG   EAL M+  M      PD + +
Sbjct: 470 YS-----------FTPAPS-HYACMIDML---GRNGRFDEALRMINDM---PFEPDALIW 511

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
             +LA C     +  G+L  + +  +   D D   Y  M ++    G  + A ++ ++
Sbjct: 512 KTLLASCKLHRNLDIGKLAADRLMELS--DRDSASYVLMSNIYAMHGEWEDARKVRRR 567



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 94/377 (24%), Positives = 178/377 (47%), Gaps = 7/377 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML   L P   T+TT+   C  ++       L        Q ++YSS   ID + ++G  
Sbjct: 133 MLKQGLKPNEHTMTTILTACPRVLGQQIHGYLIKKIGLRSQ-SVYSSTALIDFYSRNGEF 191

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             AK +FD +  +++V++  ++    +    ++AL ++ +M+S G+  +    S VL  C
Sbjct: 192 KLAKAVFDSLHCKNVVSWCSMMQLYIRDGRLEEALQVFGDMISEGVDPNEFALSIVLGAC 251

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
            + G    G Q+HC  +      ++ + + L+ +Y R G       + +++   +L +W 
Sbjct: 252 GSIGL---GRQLHCSAIKHDLITDIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWT 308

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
             + A  +    ++ + +  +M +EG  PNG +F  ++  C+    LD+G Q H   +KL
Sbjct: 309 TAISANFQNGFGEKAIALLCQMHSEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKL 368

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G  D  I   NAL++ YS CG +  A+ +FD +   DV SWNS++  +A +     ALE+
Sbjct: 369 G-CDSEICTGNALINMYSKCGQMGSARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEV 427

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY-VTKLGFDHGSVHVQSALTDMY 359
           F +M+    +P   +F+  L   + +G V  G+      + +  F     H  + + DM 
Sbjct: 428 FSKMRSNGIKPDDSTFLGVLMGCNHSGMVEEGELFFRLMIDQYSFTPAPSHY-ACMIDML 486

Query: 360 GKCNVIESSVAVFESAP 376
           G+    + ++ +    P
Sbjct: 487 GRNGRFDEALRMINDMP 503



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 54/245 (22%), Positives = 121/245 (49%), Gaps = 1/245 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I  SN  +  + ++G +   + + +++   D+V++   IS   +    ++A+ L  +M 
Sbjct: 272 DIRVSNALLSMYGRTGLVEELEAMLNKIENPDLVSWTTAISANFQNGFGEKAIALLCQMH 331

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           S G   +   FSSVLS C++     +G+Q HC  L LG    +  G+ L+++Y + G   
Sbjct: 332 SEGFTPNGYAFSSVLSSCADVASLDQGMQFHCLALKLGCDSEICTGNALINMYSKCGQMG 391

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   FD +   ++ +WN ++    +    ++ L +++KM++ G++P+  +F  ++ GC+
Sbjct: 392 SARLAFDVMHTHDVTSWNSLIHGHAQHGDANKALEVFSKMRSNGIKPDDSTFLGVLMGCN 451

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              +++EG+     +I              ++D     G   EA +  + +P + D + W
Sbjct: 452 HSGMVEEGELFFRLMIDQYSFTPAPSHYACMIDMLGRNGRFDEALRMINDMPFEPDALIW 511

Query: 282 NSIVS 286
            ++++
Sbjct: 512 KTLLA 516


>gi|147770185|emb|CAN69881.1| hypothetical protein VITISV_024112 [Vitis vinifera]
          Length = 734

 Score =  285 bits (730), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 176/585 (30%), Positives = 292/585 (49%), Gaps = 4/585 (0%)

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
           NL +    K    K+A     EM    +  +  ++  +   C       +G  IH R+  
Sbjct: 56  NLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
                +  I + L+ +Y   G  +    +FDE+  +NL +W +++ A+ +    ++ +R+
Sbjct: 116 TVKNPSGSIENCLLRMYCDCGSXIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRL 175

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           ++ M+A G+ PN   +  +++ C     L+ GKQ+HSHVI+   ++ NI V  A+ + Y 
Sbjct: 176 FSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQMHSHVIR-AQLNANITVETAICNMYV 234

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            CG L  AK  FD +   + ++W  ++  Y     +  ALELF RM +         F  
Sbjct: 235 RCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSI 294

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L       +   GKQIH ++ KLG +   V V + L D Y KC  IES+   F      
Sbjct: 295 VLKVCCXLEDWDMGKQIHSHIVKLGXE-SEVSVGTPLVDFYVKCGDIESAYRSFGRISEP 353

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           +    ++L++    SG ++D +++F  +  EG+ L+    ++  +A +  A+ N+GS   
Sbjct: 354 NDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGS--Q 411

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
            H  AIK G  S +    +++  YS+CG ++ + + FE I  P+ V +T+I++GY+ +G 
Sbjct: 412 AHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGN 471

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
             EAL     M   G+ P+ VTF+ VL  C+HSG+V E +    SM   YG+     HY 
Sbjct: 472 AAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYD 531

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           CMID   RAG+L +A EL+ + P   D M W SLL  C  H +  +G+  A  L  L+P 
Sbjct: 532 CMIDTYSRAGLLXEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPG 591

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           D A Y  + N YS  G++E +  +R+    R+L +++  S I V 
Sbjct: 592 DTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVK 636



 Score =  164 bits (415), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 215/437 (49%), Gaps = 18/437 (4%)

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +K+FDEM  +++V++ ++IS   K    ++A+ L+ +M + GI+ +++ + S+L  C   
Sbjct: 142 QKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGP 201

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
            F   G Q+H  V+      N+ + + + ++Y+R G    A  +FD +  +N  TW  ++
Sbjct: 202 SFLELGKQMHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLM 261

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
             + +  + +  L ++ +M  EGVE +   F  +++ C      D GKQ+HSH++KLG  
Sbjct: 262 VGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLG-X 320

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           +  + V   LVDFY  CG +  A +SF  I   + +SW++++S ++    + D +++F  
Sbjct: 321 ESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTS 380

Query: 304 MQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           ++   +   + SF+        +   N+  G Q HG   K G     ++ +SA+  MY K
Sbjct: 381 LR--SEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGL-VSYLYGESAMVTMYSK 437

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  ++ +   FES          ++++   + GN  +A+  F  M   G+  + VT    
Sbjct: 438 CGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAV 497

Query: 422 LKALSVS-----ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           L A S S     A   LGS       +   G +  I     ++D YSR G +  + ++  
Sbjct: 498 LTACSHSGLVAEAKQYLGS------MSRDYGVKPTIDHYDCMIDTYSRAGLLXEALELIN 551

Query: 477 KIP-SPNVVCFTSIMNG 492
           ++P  P+ + + S++ G
Sbjct: 552 RMPFEPDAMSWKSLLGG 568



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 168/337 (49%), Gaps = 7/337 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI       + +V+ G L  AK +FD M A++ VT+  L+ G  + +  + AL L+  M 
Sbjct: 222 NITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMA 281

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++     FS VL VC     +  G QIH  ++ LG    + +G+PLVD Y++ G   
Sbjct: 282 MEGVELDEFVFSIVLKVCCXLEDWDMGKQIHSHIVKLGXESEVSVGTPLVDFYVKCGDIE 341

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F  + E N  +W+ ++  F +  R ++ ++++  +++EGV  N   +  + + C+
Sbjct: 342 SAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACA 401

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ G Q H   IK G V   ++  +A+V  YS CG L  A+++F+ I   D ++W 
Sbjct: 402 AQANLNMGSQAHGDAIKRGLVSY-LYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWT 460

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I+S YA +    +AL  F RMQ    RP+  +F+  L   S +G V   KQ   Y+  +
Sbjct: 461 AIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQ---YLGSM 517

Query: 343 GFDHG---SVHVQSALTDMYGKCNVIESSVAVFESAP 376
             D+G   ++     + D Y +  ++  ++ +    P
Sbjct: 518 SRDYGVKPTIDHYDCMIDTYSRAGLLXEALELINRMP 554


>gi|125552577|gb|EAY98286.1| hypothetical protein OsI_20194 [Oryza sativa Indica Group]
          Length = 874

 Score =  285 bits (730), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 181/622 (29%), Positives = 332/622 (53%), Gaps = 17/622 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K G +    ++F+ MP +++VT+  L++GC   +   + + L+  M + GI  + 
Sbjct: 142 VDMYMKCGSVCEGIEVFEGMPKKNVVTWTSLLTGCAHAQMHSEVMALFFRMRAEGIWPNP 201

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF+SVLS  ++ G    G ++H + +  G   ++++ + L+++Y + G    A  +F+ 
Sbjct: 202 FTFASVLSAVASQGALDLGQRVHAQSVKFGCRSSVFVCNSLMNMYAKCGLVEDAKSVFNW 261

Query: 171 LPERNLATWNLMLRAF----CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +  R++ +WN ++       CEL    E L+++++ +A   +    ++  +++ C+    
Sbjct: 262 METRDMVSWNTLMAGLQLNECEL----EALQLFHESRATMGKMTQSTYATVIKLCANLKQ 317

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIV 285
           L   +QLHS V+K G+  +   V  AL D YS CG L +A   F       +V+SW +I+
Sbjct: 318 LALARQLHSCVLKHGF-HLTGNVMTALADAYSKCGELADALNIFSMTTGSRNVVSWTAII 376

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S       I  A+ LF RM+  R  P+  ++   L    +        QIH  V K  + 
Sbjct: 377 SGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAML----KASLSILPPQIHAQVIKTNYQ 432

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           H    V +AL   Y K    E ++++F+    + +   +++++    +G+ + A  +F  
Sbjct: 433 HIP-SVGTALLASYSKFGSTEDALSIFKMIEQKDVVAWSAMLSCHAQAGDCEGATYLFNK 491

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  +GI  +E T+S+ + A +   SA +   R  H  +IK  +   I VS +L+  YSR 
Sbjct: 492 MAIQGIKPNEFTISSVIDACACP-SAGVDQGRQFHAISIKYRYHDAICVSSALVSMYSRK 550

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G+I+ +  VFE+    ++V + S+++GY+++G   +A++    M   G+  D VTFL V+
Sbjct: 551 GNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAIETFRQMEASGIQMDGVTFLAVI 610

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
            GC H+G+V EGQ  F+SM   + I+   +HY+CM+D+  RAG LD+   L++  P    
Sbjct: 611 MGCTHNGLVVEGQQYFDSMVRDHKINPTMEHYACMVDLYSRAGKLDETMSLIRDMPFPAG 670

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
            M+W +LL +CRVH N  +G+  A+ L+ LEP D + Y  +SN Y+  G+++   ++R+ 
Sbjct: 671 AMVWRTLLGACRVHKNVELGKFSADKLLSLEPHDSSTYVLLSNIYAAAGKWKERDEVRKL 730

Query: 646 ALARKLTRDIGHSLIEV-NSCH 666
              RK+ ++ G S I++ N  H
Sbjct: 731 MDYRKVKKEAGCSWIQIKNKVH 752



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/543 (24%), Positives = 271/543 (49%), Gaps = 16/543 (2%)

Query: 63  AKKLFDEMPARDM-VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           A+   DE+P RD  V  N ++    +     + L  +      G+   ++T S VL  C 
Sbjct: 51  ARYPLDEIPRRDAAVGANRVLFDYARRGMVPEVLDQFSVARRGGVLVDSATLSCVLKACR 110

Query: 122 NAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           +      G Q+HC  +  G     +  G+ LVD+YM+ G     +++F+ +P++N+ TW 
Sbjct: 111 SVPDRVLGEQLHCLCVKCGHDRGEVSAGTSLVDMYMKCGSVCEGIEVFEGMPKKNVVTWT 170

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            +L          EV+ ++ +M+AEG+ PN  +F  ++   +    LD G+++H+  +K 
Sbjct: 171 SLLTGCAHAQMHSEVMALFFRMRAEGIWPNPFTFASVLSAVASQGALDLGQRVHAQSVKF 230

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G    ++FV N+L++ Y+ CG + +AK  F+++   D++SWN++++     +   +AL+L
Sbjct: 231 G-CRSSVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQL 289

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F   +    + +  ++   +   +    +   +Q+H  V K GF H + +V +AL D Y 
Sbjct: 290 FHESRATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGF-HLTGNVMTALADAYS 348

Query: 361 KCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           KC  +  ++ +F    G R++    ++++  + +G+I  AV +F  M ++ +  +E T S
Sbjct: 349 KCGELADALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYS 408

Query: 420 TTLKA-LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
             LKA LS+           +H   IK+ ++   +V  +L+ +YS+ G  E +  +F+ I
Sbjct: 409 AMLKASLSILPPQ-------IHAQVIKTNYQHIPSVGTALLASYSKFGSTEDALSIFKMI 461

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-HSGMVKEG 537
              +VV ++++++ +++ G    A  +   M  +G+ P++ T   V+  C   S  V +G
Sbjct: 462 EQKDVVAWSAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQG 521

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           +  F+++   Y         S ++ M  R G +D A+ + ++     D + W+S++    
Sbjct: 522 RQ-FHAISIKYRYHDAICVSSALVSMYSRKGNIDSAQIVFERQT-DRDLVSWNSMISGYA 579

Query: 598 VHG 600
            HG
Sbjct: 580 QHG 582



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 120/446 (26%), Positives = 209/446 (46%), Gaps = 19/446 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  ++ + K G +  AK +F+ M  RDMV++N L++G        +AL L+ E  
Sbjct: 235 SVFVCNSLMNMYAKCGLVEDAKSVFNWMETRDMVSWNTLMAGLQLNECELEALQLFHESR 294

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +   K + ST+++V+ +C+N        Q+H  VL  GF L   + + L D Y + G   
Sbjct: 295 ATMGKMTQSTYATVIKLCANLKQLALARQLHSCVLKHGFHLTGNVMTALADAYSKCGELA 354

Query: 163 RALDLFD-ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            AL++F      RN+ +W  ++    +       + ++++M+ + V PN  ++  M++  
Sbjct: 355 DALNIFSMTTGSRNVVSWTAIISGCIQNGDIPLAVVLFSRMREDRVMPNEFTYSAMLKA- 413

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S+ +L     Q+H+ VIK  +  +   V  AL+  YS  GS  +A   F  I   DV++W
Sbjct: 414 SLSIL---PPQIHAQVIKTNYQHIP-SVGTALLASYSKFGSTEDALSIFKMIEQKDVVAW 469

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGYVT 340
           ++++S +A       A  LF +M +   +P+  +    ++  A  +  V  G+Q H    
Sbjct: 470 SAMLSCHAQAGDCEGATYLFNKMAIQGIKPNEFTISSVIDACACPSAGVDQGRQFHAISI 529

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K  + H ++ V SAL  MY +   I+S+  VFE    R L   NS+++     G    A+
Sbjct: 530 KYRY-HDAICVSSALVSMYSRKGNIDSAQIVFERQTDRDLVSWNSMISGYAQHGYSMKAI 588

Query: 401 EMFGFMVDEGIGLDEVT-----LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
           E F  M   GI +D VT     +  T   L V       S    H   I    E     +
Sbjct: 589 ETFRQMEASGIQMDGVTFLAVIMGCTHNGLVVEGQQYFDSMVRDH--KINPTMEH---YA 643

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSP 481
           C ++D YSR G ++ +  +   +P P
Sbjct: 644 C-MVDLYSRAGKLDETMSLIRDMPFP 668


>gi|357134267|ref|XP_003568739.1| PREDICTED: pentatricopeptide repeat-containing protein At3g49170,
           chloroplastic-like [Brachypodium distachyon]
          Length = 818

 Score =  285 bits (730), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 185/631 (29%), Positives = 343/631 (54%), Gaps = 24/631 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           +N  +  + K G + +A+++FD+M   RD+V++  + S   +    +++L L  EM+  G
Sbjct: 79  ANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCLARNGAERESLRLLGEMLELG 138

Query: 106 IKESASTFSSVLSVC-SNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVR 163
           ++ +A T  +    C     F   G  +   VL  GF G ++ +G  L+D++ R G  V 
Sbjct: 139 LRPNAFTLCAAARACFPQELFRLAGGVVLGFVLKTGFWGTDVSVGCALIDMFARNGDLVA 198

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD L ER    W L++  + +     +V+ ++  M  +G EP+G S   M+  C+ 
Sbjct: 199 AQRVFDGLIERTSVVWTLLITRYVQAGCASKVVELFLHMLDDGFEPDGYSMSSMISACTE 258

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG---SLIEAKKSFDFIPVDDVIS 280
              +  G+QLHS  ++LG V  +  V+  LVD Y+      S+  A+K F  +P  +V+S
Sbjct: 259 LGSVRLGQQLHSVALRLGLVS-DSCVSCGLVDMYAKLKMERSMEHARKVFKTMPRHNVMS 317

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           W +++S Y    +  + +   FR  L    RP+  ++   L   +   +   G+QIH +V
Sbjct: 318 WTALISGYVQSGVQENNVMALFREMLNESIRPNHITYSNLLKACANLSDQDSGRQIHAHV 377

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K    H +V V +AL  MY +   +E +   F+     ++   +  + +  ++ +    
Sbjct: 378 LKTSIAHVNV-VGNALVSMYAESGCMEEARKAFDQLYETNILSMSPDVETERNNASCSSK 436

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSC 456
           +E          G+D+   + T  +L +SA+A++G     + LH  ++K+GF S+  +S 
Sbjct: 437 IE----------GMDDGVSTFTFASL-LSAAASVGLLTKGQKLHALSMKAGFRSDQGISN 485

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+  Y+RCG++E + + F+++   NV+ +TSI++G +++G  ++AL M   MI  G+ P
Sbjct: 486 SLVSMYARCGYLEDACRAFDEMKDHNVISWTSIISGLAKHGYAKQALSMFHDMILAGVKP 545

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + VT++ VL+ C+H G+VKEG+  F SM+  +G+    +HY+C++D+L R+G++++A + 
Sbjct: 546 NDVTYIAVLSACSHVGLVKEGKEHFRSMQKDHGLLPRMEHYACIVDLLARSGLVEEARQF 605

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           + + P   D ++W +LL +CR +GN  IG   AN ++ LEP D A Y  +SN Y++ G +
Sbjct: 606 INEMPCKADALVWKTLLSACRTYGNTEIGEIAANHVINLEPRDPAPYVLLSNLYADAGLW 665

Query: 637 EVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           +   +IR     + L+++ G S ++V N+ H
Sbjct: 666 DEVARIRSLMRDKNLSKETGLSWMDVGNTIH 696



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/372 (25%), Positives = 174/372 (46%), Gaps = 41/372 (11%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FIPVDDVISWNSIVSIY 288
           G+ LH  +++   +D +  VAN+L+  YS CG++  A++ FD    V D++SW ++ S  
Sbjct: 59  GRALHRRLLRSEILDTDAVVANSLLTMYSKCGAVEAARRVFDQMCGVRDLVSWTAMASCL 118

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFV---------EFLNFASRTGNVYFGKQIHGYV 339
           A      ++L L   M     RP+  +           E    A        G  + G+V
Sbjct: 119 ARNGAERESLRLLGEMLELGLRPNAFTLCAAARACFPQELFRLA--------GGVVLGFV 170

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF    V V  AL DM+ +   + ++  VF+    R+      L+T  + +G     
Sbjct: 171 LKTGFWGTDVSVGCALIDMFARNGDLVAAQRVFDGLIERTSVVWTLLITRYVQAGCASKV 230

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSC 456
           VE+F  M+D+G   D  ++S+      +SA   LGS RL   LH  A++ G  S+  VSC
Sbjct: 231 VELFLHMLDDGFEPDGYSMSSM-----ISACTELGSVRLGQQLHSVALRLGLVSDSCVSC 285

Query: 457 SLMDAYSRCG---HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR-EALDMLEVMIQR 512
            L+D Y++      +E + +VF+ +P  NV+ +T++++GY ++G+     + +   M+  
Sbjct: 286 GLVDMYAKLKMERSMEHARKVFKTMPRHNVMSWTALISGYVQSGVQENNVMALFREMLNE 345

Query: 513 GLIPDKVTFLCVLAGC-----NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            + P+ +T+  +L  C       SG      ++  S+  V  +       + ++ M   +
Sbjct: 346 SIRPNHITYSNLLKACANLSDQDSGRQIHAHVLKTSIAHVNVVG------NALVSMYAES 399

Query: 568 GILDKAEELLQQ 579
           G +++A +   Q
Sbjct: 400 GCMEEARKAFDQ 411


>gi|212275047|ref|NP_001130303.1| uncharacterized protein LOC100191397 [Zea mays]
 gi|194688792|gb|ACF78480.1| unknown [Zea mays]
          Length = 706

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 185/669 (27%), Positives = 321/669 (47%), Gaps = 48/669 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   L P   T+ ++   C ++  L           +     + +  N  +  + K G 
Sbjct: 32  MLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGS 91

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A +LFD MP+ + V++  ++ G  +      AL L+  M   GI+      SSVL  
Sbjct: 92  VADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGA 151

Query: 120 CSNA--GFY--TEGIQ----IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           C+ A  G Y     IQ    IH  V+  GFG + ++G+ LVDLY +      A+ +F+ L
Sbjct: 152 CAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESL 211

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
              ++ +WN+++  + +L   +  + +   M+  G EPN +++  M+  C          
Sbjct: 212 SSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASC---------- 261

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
                 IK                       +  A+  FD IP   V +WN+++S Y   
Sbjct: 262 ------IK--------------------ARDVPSARAMFDKIPKPSVTTWNTLLSGYGQE 295

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           +L  + ++LF RMQ    +P   +    L+  SR GN   GKQ+H    +L   H  + V
Sbjct: 296 ELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRL-LLHNDMFV 354

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            S L D+Y KC  +  ++ +F     R + C NS+++ L      ++A +    M + G+
Sbjct: 355 ASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGM 414

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
              E + ++ +   +  +S   G  R +H   +K G++ N+ V CSL+D Y++ G+++ +
Sbjct: 415 FPTESSYASMINLCARLSSIPQG--RQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDA 472

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
              F  +   N+V +  +++GY++NG G +A+++ E M+     PD VTF+ VL GC+HS
Sbjct: 473 RLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHS 532

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V E    FNSM+S YGI    +HY+C+ID L RA    + E ++ + P   D ++W  
Sbjct: 533 GLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEV 592

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +C VH N  +G   A  L  L+P + + Y  +SN Y+ +G    +  +R    +R +
Sbjct: 593 LLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGV 652

Query: 652 TRDIGHSLI 660
            +  G+S +
Sbjct: 653 VKGRGYSWV 661



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 112/513 (21%), Positives = 235/513 (45%), Gaps = 50/513 (9%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           MP R+ V++N +I+   +   P +AL +Y  M+  G+  +  T +SVLS C       +G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            + H   + +G   + ++ + L+ +Y + G    A+ LFD +P  N  ++  M+    + 
Sbjct: 61  RRCHGLAVKVGLDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQG 120

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS--------IGMLLDEGKQLHSHVIKLG 241
              D+ LR++ +M   G+  + ++   ++  C+        +   +   + +H+ V++ G
Sbjct: 121 GAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRKG 180

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
           +   +  V N+LVD Y+    + EA K F+ +    ++SWN +++ Y        A+E+ 
Sbjct: 181 F-GSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVL 239

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             MQ                                   + GF+   V   + L     K
Sbjct: 240 EFMQ-----------------------------------ESGFEPNEVTYSNMLASCI-K 263

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
              + S+ A+F+  P  S+   N+L++        ++ +++F  M  + +  D  TL+  
Sbjct: 264 ARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQNVQPDRTTLAVI 323

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L + S   +  LG  + +H  +++    +++ V+  L+D YS+CG + ++  +F  +   
Sbjct: 324 LSSCSRLGNFELG--KQVHSASVRLLLHNDMFVASGLIDIYSKCGQVGIALIIFNMMTER 381

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLV 540
           +VVC+ S+++G + + +  EA D L+ M + G+ P + ++  ++  C     + +G Q+ 
Sbjct: 382 DVVCWNSMISGLAIHSLSEEAFDFLKQMRENGMFPTESSYASMINLCARLSSIPQGRQMH 441

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
              +K   G D +      +IDM  ++G +D A
Sbjct: 442 AQVLKD--GYDQNVYVGCSLIDMYAKSGNMDDA 472



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/389 (25%), Positives = 183/389 (47%), Gaps = 34/389 (8%)

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +P  + +SWN++++  A      +ALE++  M      P+  +    L+       +  G
Sbjct: 1   MPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSACGAVAALDDG 60

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           ++ HG   K+G D G   V++ L  MY KC  +  +V +F+  P  +     ++M  L  
Sbjct: 61  RRCHGLAVKVGLD-GHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSFTAMMGGLAQ 119

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL------HCCAIKS 446
            G + DA+ +F  M   GI +D V +S+ L A + + + +    R +      H   ++ 
Sbjct: 120 GGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQSIHALVVRK 179

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           GF S+  V  SL+D Y++   ++ + +VFE + S ++V +  ++ GY + G    A+++L
Sbjct: 180 GFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQLGCYERAMEVL 239

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-----------NSMKSVYGIDADRQ 555
           E M + G  P++VT+  +LA C  +  V   + +F           N++ S YG +   Q
Sbjct: 240 EFMQESGFEPNEVTYSNMLASCIKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQ 299

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV--ANILM 613
                ID+  R          +Q      D    + +L SC   GN  +G++V  A++ +
Sbjct: 300 E---TIDLFRR----------MQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRL 346

Query: 614 ELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
            L   D  V S + + YS+ G+  +++ I
Sbjct: 347 LLHN-DMFVASGLIDIYSKCGQVGIALII 374


>gi|297849508|ref|XP_002892635.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338477|gb|EFH68894.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 809

 Score =  285 bits (729), Expect = 5e-74,   Method: Compositional matrix adjust.
 Identities = 169/617 (27%), Positives = 326/617 (52%), Gaps = 11/617 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           F + G ++ A ++F+ +  +  V Y  ++ G  K     +AL  +  M    ++     F
Sbjct: 79  FCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSDLDKALKFFVRMRDDEVEPVVYNF 138

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           + +L VC +      G +IH  ++  GF L+L+  + L ++Y +      A  +FD +PE
Sbjct: 139 TYLLKVCGDEAELRVGKEIHGLLVKSGFSLDLFAMTGLENMYAKCRQVHEARKVFDRMPE 198

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+L +WN ++  + +       L M N M  E ++P+ ++   ++   S   L+  GK++
Sbjct: 199 RDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKPSFITIVSVLPAVSALRLIRIGKEI 258

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H + ++ G+ D  + +A ALVD Y+ CGSL  A+  FD +   +V+SWNS++  Y   + 
Sbjct: 259 HGYAMRAGF-DSLVNIATALVDMYAKCGSLKTARLLFDGMLERNVVSWNSMIDAYVQNEN 317

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +A+ +F +M     +P+  S +  L+  +  G++  G+ IH    +L  D  +V V +
Sbjct: 318 PKEAMVIFQKMLDEGVKPTDVSVMGALHACADLGDLERGRFIHKLSVELELDR-NVSVVN 376

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           +L  MY KC  ++++ ++F     R++   N+++     +G   +A+  F  M    +  
Sbjct: 377 SLISMYCKCKEVDTAASMFGKLQSRTIVSWNAMILGFAQNGRPIEALNYFSQMQARTVKP 436

Query: 414 DE---VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           D    V++ T +  LS++  A     + +H   +++  + N+ V+ +L+D Y++CG I +
Sbjct: 437 DTFTYVSVITAIAELSITHHA-----KWIHGVVMRNCLDKNVFVTTALVDMYAKCGAIMI 491

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +  +F+ +   +V  + ++++GY  +G+G+ AL++ E M +  + P+ VTFL V++ C+H
Sbjct: 492 ARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALELFEEMQKGTIRPNGVTFLSVISACSH 551

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG+V+ G   F+ MK  Y I+    HY  M+D+LGRAG L++A + + Q P      ++ 
Sbjct: 552 SGLVEAGLKCFHMMKENYSIEPSMDHYGAMVDLLGRAGRLNEAWDFIMQMPVKPAVNVYG 611

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           ++L +C++H N     +VA  L EL P D   +  ++N Y     +E   Q+R + L + 
Sbjct: 612 AMLGACQIHKNVNFAEKVAERLFELNPEDGGYHVLLANIYRAASMWEKVGQVRVSMLRQG 671

Query: 651 LTRDIGHSLIEV-NSCH 666
           L +  G S++E+ N  H
Sbjct: 672 LRKTPGCSMVEIKNEVH 688



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 249/489 (50%), Gaps = 21/489 (4%)

Query: 136 VLSLGFGLNLY----IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +L L F   LY      + LV L+ R G    A  +F+ + ++    +  ML+ F ++S 
Sbjct: 56  ILPLIFKNGLYQEHLFQTKLVSLFCRYGSVDEAARVFEPIDKKLNVLYYTMLKGFAKVSD 115

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
            D+ L+ + +M+ + VEP   +F Y+++ C     L  GK++H  ++K G+  +++F   
Sbjct: 116 LDKALKFFVRMRDDEVEPVVYNFTYLLKVCGDEAELRVGKEIHGLLVKSGF-SLDLFAMT 174

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
            L + Y+ C  + EA+K FD +P  D++SWN+IV+ Y+   +   ALE+   M     +P
Sbjct: 175 GLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLMCEENLKP 234

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
           S  + V  L   S    +  GK+IHGY  + GFD   V++ +AL DMY KC  ++++  +
Sbjct: 235 SFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFD-SLVNIATALVDMYAKCGSLKTARLL 293

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F+    R++   NS++ + + + N K+A+ +F  M+DEG+   +V++   L      A A
Sbjct: 294 FDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALH-----ACA 348

Query: 432 NLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           +LG     R +H  +++   + N++V  SL+  Y +C  ++ +  +F K+ S  +V + +
Sbjct: 349 DLGDLERGRFIHKLSVELELDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSWNA 408

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSV 547
           ++ G+++NG   EAL+    M  R + PD  T++ V+       +    + +    M++ 
Sbjct: 409 MILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMRNC 468

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
             +D +    + ++DM  + G +  A  L+           W++++     HG   IG+ 
Sbjct: 469 --LDKNVFVTTALVDMYAKCGAIMIA-RLIFDMMSERHVTTWNAMIDGYGTHG---IGKA 522

Query: 608 VANILMELE 616
              +  E++
Sbjct: 523 ALELFEEMQ 531



 Score =  172 bits (436), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 119/452 (26%), Positives = 213/452 (47%), Gaps = 4/452 (0%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++++     + + K   ++ A+K+FD MP RD+V++N +++G  +    + AL + + M
Sbjct: 168 LDLFAMTGLENMYAKCRQVHEARKVFDRMPERDLVSWNTIVAGYSQNGMARMALEMVNLM 227

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +K S  T  SVL   S       G +IH   +  GF   + I + LVD+Y + G  
Sbjct: 228 CEENLKPSFITIVSVLPAVSALRLIRIGKEIHGYAMRAGFDSLVNIATALVDMYAKCGSL 287

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LFD + ERN+ +WN M+ A+ +   P E + ++ KM  EGV+P  +S    +  C
Sbjct: 288 KTARLLFDGMLERNVVSWNSMIDAYVQNENPKEAMVIFQKMLDEGVKPTDVSVMGALHAC 347

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L+ G+ +H   ++L  +D N+ V N+L+  Y  C  +  A   F  +    ++SW
Sbjct: 348 ADLGDLERGRFIHKLSVELE-LDRNVSVVNSLISMYCKCKEVDTAASMFGKLQSRTIVSW 406

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A      +AL  F +MQ    +P   ++V  +   +     +  K IHG V +
Sbjct: 407 NAMILGFAQNGRPIEALNYFSQMQARTVKPDTFTYVSVITAIAELSITHHAKWIHGVVMR 466

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D  +V V +AL DMY KC  I  +  +F+    R +   N+++      G  K A+E
Sbjct: 467 NCLDK-NVFVTTALVDMYAKCGAIMIARLIFDMMSERHVTTWNAMIDGYGTHGIGKAALE 525

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M    I  + VT  + + A S S     G  +  H        E ++    +++D 
Sbjct: 526 LFEEMQKGTIRPNGVTFLSVISACSHSGLVEAG-LKCFHMMKENYSIEPSMDHYGAMVDL 584

Query: 462 YSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
             R G +  +     ++P  P V  + +++  
Sbjct: 585 LGRAGRLNEAWDFIMQMPVKPAVNVYGAMLGA 616


>gi|297807343|ref|XP_002871555.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317392|gb|EFH47814.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 822

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 175/621 (28%), Positives = 334/621 (53%), Gaps = 10/621 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++++N  ++ +VK+G    A  LFDEMP R+ V+Y  L  G       +  + LY  +
Sbjct: 82  LDLFATNILLNAYVKAGFDKDALNLFDEMPERNNVSYVTLTQGYA----CQDPVGLYSRL 137

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G + +   F+S L +  +         +H  ++ LG+  N ++G+ L++ Y   G  
Sbjct: 138 HREGHELNPHVFTSFLKLFVSLDKAEICWWLHSPIVKLGYDSNAFVGAALINAYSVCGSV 197

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F+ +  +++  W  ++  + E    ++ L++ ++M  +G  PN  +F   ++  
Sbjct: 198 DSARSVFEGILCKDIVVWAGIVSCYVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKA- 256

Query: 222 SIGM-LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           SIG+      K +H  ++K  + +++  V   L+  Y+  G + +A K F+ +P +DV+ 
Sbjct: 257 SIGLGAFHFAKSVHGQILKTCY-ELDPRVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVP 315

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W+ +++ +        A+++F RM+     P+  +    LN  +       G+Q+HG V 
Sbjct: 316 WSFMIARFCQNGFCNKAVDIFIRMREGFVVPNEFTLSSILNGCAIGKCSGLGEQLHGLVV 375

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K+GFD   V+V +AL D+Y KC  ++++V +F     +++   N+++    + G    A+
Sbjct: 376 KVGFDL-DVYVSNALIDVYAKCEKMDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKAL 434

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            MF   +   + + EVT S+ L A +  AS  LG    +H  AIK+     +AVS SL+D
Sbjct: 435 NMFREALRNQVSVTEVTFSSALGACASLASMELGV--QVHGLAIKTNNAKRVAVSNSLID 492

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG I+++  VF ++ + +V  + ++++GYS +G+GR+AL + ++M      P+ +T
Sbjct: 493 MYAKCGDIKVAQTVFNEMETIDVASWNALISGYSTHGLGRQALRIFDIMKGSDCKPNGLT 552

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL+GC+++G++ +GQ  F SM   +GI+   +HY+CM+ + GR+G LDKA  L++  
Sbjct: 553 FLGVLSGCSNAGLIDQGQDCFESMICDHGIEPCLEHYTCMVRLFGRSGQLDKAMNLIEGI 612

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P     M+W ++L +     NE   RR A  ++++ P D A Y  +SN Y+   ++    
Sbjct: 613 PYEPSVMIWRAMLSASMNQYNEEFARRSAEEILKINPKDEATYVLLSNMYAGAKQWANVA 672

Query: 641 QIRETALARKLTRDIGHSLIE 661
            IR++   + + ++ G S IE
Sbjct: 673 SIRKSMKEKGVKKEPGLSWIE 693



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 135/506 (26%), Positives = 247/506 (48%), Gaps = 23/506 (4%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
            + ++L  C           IHC +L  G  L+L+  + L++ Y++ G    AL+LFDE+
Sbjct: 51  AYGTMLRRCIRKNDSVSAKAIHCDILKKGSCLDLFATNILLNAYVKAGFDKDALNLFDEM 110

Query: 172 PERNLATWNLMLRAF-CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           PERN  ++  + + + C+     + + +Y+++  EG E N   F   ++   + + LD+ 
Sbjct: 111 PERNNVSYVTLTQGYACQ-----DPVGLYSRLHREGHELNPHVFTSFLK---LFVSLDKA 162

Query: 231 K---QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           +    LHS ++KLG+ D N FV  AL++ YS CGS+  A+  F+ I   D++ W  IVS 
Sbjct: 163 EICWWLHSPIVKLGY-DSNAFVGAALINAYSVCGSVDSARSVFEGILCKDIVVWAGIVSC 221

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y +     D+L+L  RM +    P+  +F   L  +   G  +F K +HG + K  ++  
Sbjct: 222 YVENGCFEDSLQLLSRMGMDGFMPNNYTFDTALKASIGLGAFHFAKSVHGQILKTCYELD 281

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
              V   L  +Y +   +  +  VF   P   +   + ++     +G    AV++F  M 
Sbjct: 282 P-RVGVGLLQLYTQLGDMSDAFKVFNEMPKNDVVPWSFMIARFCQNGFCNKAVDIFIRMR 340

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           +  +  +E TLS+ L   ++   + LG    LH   +K GF+ ++ VS +L+D Y++C  
Sbjct: 341 EGFVVPNEFTLSSILNGCAIGKCSGLG--EQLHGLVVKVGFDLDVYVSNALIDVYAKCEK 398

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           ++ + ++F ++ S NVV + +++ GY   G G +AL+M    ++  +   +VTF   L  
Sbjct: 399 MDTAVKLFAELSSKNVVSWNTVIVGYENLGEGGKALNMFREALRNQVSVTEVTFSSALGA 458

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYS-CMIDMLGRAGILDKAEELLQQTPGGGDC 586
           C     ++ G  V     ++   +A R   S  +IDM  + G +  A+ +  +     D 
Sbjct: 459 CASLASMELGVQVHG--LAIKTNNAKRVAVSNSLIDMYAKCGDIKVAQTVFNEME-TIDV 515

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANIL 612
             W++L+     HG   +GR+   I 
Sbjct: 516 ASWNALISGYSTHG---LGRQALRIF 538


>gi|302797883|ref|XP_002980702.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
 gi|300151708|gb|EFJ18353.1| hypothetical protein SELMODRAFT_113181 [Selaginella moellendorffii]
          Length = 1108

 Score =  285 bits (729), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 179/624 (28%), Positives = 324/624 (51%), Gaps = 12/624 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++   N  I  + K G  ++A  +F  +  + D++++N ++      +   + +  +  M
Sbjct: 369 DVVVGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHM 428

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG-LNLYIGSPLVDLYMRMGP 160
           +  GI  +  +F ++L+ CSN+     G +IH  +L+     +   + + LV +Y + G 
Sbjct: 429 LLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGS 488

Query: 161 SVRALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
              A  +F E  LP R+L TWN+ML A+ +  R  E      +M   GV P+ LSF  ++
Sbjct: 489 IAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVL 548

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C       E + L   +++ G+    +    AL+  +  C  L +A+  FD +   DV
Sbjct: 549 SSCYCS---QEAQVLRMCILESGYRSACL--ETALISMHGRCRELEQARSVFDEMDHGDV 603

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW ++VS  A+     +   LF RMQL    P   +    L+    +  +  GK IH  
Sbjct: 604 VSWTAMVSATAENRDFKEVHHLFRRMQLEGVIPDKFTLATTLDTCLDSTTLGLGKIIHAC 663

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           VT++G +   + V++AL +MY  C     +++ FE+   R L   N +  +   +G  K+
Sbjct: 664 VTEIGLE-ADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           AV +F  M  EG+  D++T STTL     SA  + G  +L H  A +SG +S+++V+  L
Sbjct: 723 AVLLFRHMQLEGVKPDKLTFSTTLNVSGGSALVSDG--KLFHGLAAESGLDSDVSVATGL 780

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG ++ +  +F       VV   +I+   +++G   EA+ M   M Q G+ PD 
Sbjct: 781 VKLYAKCGKLDEAISLFRGACQWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDV 840

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            T + +++ C H+GMV+EG   F +MK  +GI    +HY+C +D+LGRAG L+ AE++++
Sbjct: 841 ATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIR 900

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           + P   + ++W+SLL +C++ G+  +G R A  ++EL+P + A +  +SN Y   G+++ 
Sbjct: 901 KMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKD 960

Query: 639 SMQIRETALARKLTRDIGHSLIEV 662
           +   R+  L + +    G S +E+
Sbjct: 961 ADVDRKKLLDQNVKNAPGMSWLEI 984



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 157/616 (25%), Positives = 299/616 (48%), Gaps = 37/616 (6%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS--SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSG 58
           ML   L P V T  T    CTS+   +   SLL ++    +P     + N  I+ + K G
Sbjct: 224 MLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEAGLGFDP----LAGNALINMYGKCG 279

Query: 59  HLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
               A  +F  M +R   D+V++N +IS   +      A+ ++  +   G++ ++ T  +
Sbjct: 280 DWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLIT 339

Query: 116 VLSVCSNAGF-YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           +L+  + +G  +    + H R+   G+  ++ +G+ ++ +Y + G    A  +F  +  +
Sbjct: 340 ILNALAASGVDFGAARKFHGRIWESGYLRDVVVGNAIISMYAKCGFFSAAWTVFRRIRWK 399

Query: 175 -NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ +WN ML A  +     +V+  ++ M   G++PN +SF  ++  CS    LD G+++
Sbjct: 400 CDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKI 459

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSIVSIYADY 291
           HS ++      V   VA  LV  Y  CGS+ EA+  F  +P+    +++WN ++  YA  
Sbjct: 460 HSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQN 519

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLN--FASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           D   +A      M      P   SF   L+  + S+   V     +   + + G+   S 
Sbjct: 520 DRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQV-----LRMCILESGYR--SA 572

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            +++AL  M+G+C  +E + +VF+      +    +++++   + + K+   +F  M  E
Sbjct: 573 CLETALISMHGRCRELEQARSVFDEMDHGDVVSWTAMVSATAENRDFKEVHHLFRRMQLE 632

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+  D+ TL+TTL     S +  LG  +++H C  + G E++IAV  +L++ YS CG   
Sbjct: 633 GVIPDKFTLATTLDTCLDSTTLGLG--KIIHACVTEIGLEADIAVENALLNMYSNCGDWR 690

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +   FE + + ++V +  +   Y++ G+ +EA+ +   M   G+ PDK+TF   L    
Sbjct: 691 EALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSG 750

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            S +V +G+L F+ + +  G+D+D    + ++ +  + G LD+A  L +     G C  W
Sbjct: 751 GSALVSDGKL-FHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFR-----GAC-QW 803

Query: 590 SSLLRSCRVHGNEIIG 605
           + +L       N IIG
Sbjct: 804 TVVLL------NAIIG 813



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 167/672 (24%), Positives = 310/672 (46%), Gaps = 85/672 (12%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           + +++  N  I+ +V+ G L  A  +F +M  R++V++  LIS   +     +A  L+  
Sbjct: 57  EQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQSGAFARAFALFRT 116

Query: 101 MVSHGIKESAS----TFSSVLSVCSNAGFYTEGIQIHCRVLSLGF----GLNLYIGSPLV 152
           M+   ++ SA+    T  ++L+ C+N+     G  IH  +  LG          +G+ ++
Sbjct: 117 ML---LESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERESTTATLVGNAMI 173

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR--PDEVLRMYNKMKAEGVEPN 210
           ++Y + G    A+ +F  +PE+++ +W  M  A+ +  R  PD  LR++ +M  + + PN
Sbjct: 174 NMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAYAQERRFYPD-ALRIFREMLLQPLAPN 232

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
            ++F   +  C+    L +G  LHS + + G +  +    NAL++ Y  CG    A   F
Sbjct: 233 VITFITALGACTS---LRDGTWLHSLLHEAG-LGFDPLAGNALINMYGKCGDWEGAYGVF 288

Query: 271 DFIPVD---DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
             +      D++SWN+++S   +     DA+ +F R++L   RP+  + +  LN  + +G
Sbjct: 289 KAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNALAASG 348

Query: 328 NVYFG--KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCN 384
            V FG  ++ HG + + G+    V V +A+  MY KC    ++  VF     +  +   N
Sbjct: 349 -VDFGAARKFHGRIWESGYLRDVV-VGNAIISMYAKCGFFSAAWTVFRRIRWKCDVISWN 406

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           +++ +     +    V  F  M+  GI  ++V+    L A S S + + G  R +H   +
Sbjct: 407 TMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFG--RKIHSLIL 464

Query: 445 ---KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP--NVVCFTSIMNGYSRNGMG 499
              +   ES++A    L+  Y +CG I  +  VF+++P P  ++V +  ++  Y++N   
Sbjct: 465 TRRRDYVESSVAT--MLVSMYGKCGSIAEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRS 522

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ-LVFNSMKSVYGIDADRQHYS 558
           +EA   L  M+Q G++PD ++F  VL+ C  S   +E Q L    ++S Y         +
Sbjct: 523 KEAFGALMEMLQGGVLPDALSFTSVLSSCYCS---QEAQVLRMCILESGY---RSACLET 576

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS----------------LLRSCRVHG-- 600
            +I M GR   L++A  +  +    GD + W++                L R  ++ G  
Sbjct: 577 ALISMHGRCRELEQARSVFDEMD-HGDVVSWTAMVSATAENRDFKEVHHLFRRMQLEGVI 635

Query: 601 ---------------------NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
                                 +II   V  I +E    D AV + + N YS  G++  +
Sbjct: 636 PDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLE---ADIAVENALLNMYSNCGDWREA 692

Query: 640 MQIRETALARKL 651
           +   ET  AR L
Sbjct: 693 LSFFETMKARDL 704



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 238/481 (49%), Gaps = 20/481 (4%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           ++++L  C ++    +G + H  + + G   +L++G+ L+++Y+R G    A  +F ++ 
Sbjct: 28  YTALLQSCVDSNDLAKGKRAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGK 231
           ERN+ +W  ++ A  +         ++  M  E    PN  +   M+  C+    L  G+
Sbjct: 88  ERNVVSWTALISANAQSGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 232 QLHSHVIKLGW---VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            +H+ + +LG          V NA+++ Y+ CGS  +A   F  IP  DV+SW ++   Y
Sbjct: 148 SIHAMIWELGLERESTTATLVGNAMINMYAKCGSPEDAIAVFLTIPEKDVVSWTAMAGAY 207

Query: 289 ADYDLIF-DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFD 345
           A     + DAL +F  M L    P++ +F+  L   +   ++  G  +H  + +  LGFD
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACT---SLRDGTWLHSLLHEAGLGFD 264

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS---LECCNSLMTSLLHSGNIKDAVEM 402
             +    +AL +MYGKC   E +  VF++   R    L   N+++++ + +G   DA+ +
Sbjct: 265 PLA---GNALINMYGKCGDWEGAYGVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAI 321

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  +  EG+  + VTL T L AL+ S   + G+ R  H    +SG+  ++ V  +++  Y
Sbjct: 322 FRRLRLEGMRPNSVTLITILNALAASG-VDFGAARKFHGRIWESGYLRDVVVGNAIISMY 380

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS--RNGMGREALDMLEVMIQRGLIPDKVT 520
           ++CG    +  VF +I     V   + M G S  R   G+  ++    M+  G+ P+KV+
Sbjct: 381 AKCGFFSAAWTVFRRIRWKCDVISWNTMLGASEDRKSFGK-VVNTFHHMLLAGIDPNKVS 439

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ +L  C++S  +  G+ + + + +      +    + ++ M G+ G + +AE + ++ 
Sbjct: 440 FIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSIAEAELVFKEM 499

Query: 581 P 581
           P
Sbjct: 500 P 500



 Score = 86.7 bits (213), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 124/282 (43%), Gaps = 2/282 (0%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDS-YCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           ++P   T+ T   TC     L    ++ +   +   + +I   N  ++ +   G    A 
Sbjct: 634 VIPDKFTLATTLDTCLDSTTLGLGKIIHACVTEIGLEADIAVENALLNMYSNCGDWREAL 693

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
             F+ M ARD+V++N++ +   +    K+A+ L+  M   G+K    TFS+ L+V   + 
Sbjct: 694 SFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRHMQLEGVKPDKLTFSTTLNVSGGSA 753

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
             ++G   H      G   ++ + + LV LY + G    A+ LF    +  +   N ++ 
Sbjct: 754 LVSDGKLFHGLAAESGLDSDVSVATGLVKLYAKCGKLDEAISLFRGACQWTVVLLNAIIG 813

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           A  +    +E ++M+ KM+ EGV P+  +   ++  C    +++EG      + +   + 
Sbjct: 814 ALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGIS 873

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDD-VISWNSIV 285
             +      VD     G L  A++    +P +D  + W S++
Sbjct: 874 PTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL 915


>gi|225456517|ref|XP_002281018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 624

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 162/501 (32%), Positives = 273/501 (54%), Gaps = 8/501 (1%)

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LF ++ + N+ +WN M RA+   S P E + +YN M   G  P+  SF ++++ C+   L
Sbjct: 83  LFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACARLSL 142

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDVISWNSI 284
           L +G+++HS  +KLG V +++FV NAL+  +S+CG++  A+  FD +P  V DV+SWNS+
Sbjct: 143 LHKGREIHSSTLKLG-VHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSM 201

Query: 285 VSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +S Y        AL++F+ +       P   + V  L+   R G +  GK+IHG  T  G
Sbjct: 202 ISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSG 261

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           F    V V S+L DMY KC  IE +  VF+  P R+  C  S++     S   K+A+E+F
Sbjct: 262 FVL-DVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELF 320

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M   G   D  T++  L A     +  L   R +H    ++  E ++    +L+  YS
Sbjct: 321 REMQIGGFAADAATIACVLSACGHWGA--LAQGRWIHLYCERNSIEMDLNARNALIGMYS 378

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM-IQRGLIPDKVTFL 522
           +CG I+ + ++F  +  P++  ++++++G + NG   +AL +   M +   + P+++TFL
Sbjct: 379 KCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFL 438

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  CNH G V +G   FN+M  +Y +    +HY CM+D+LGRA +L +AE+ ++  P 
Sbjct: 439 GVLCACNHGGFVDKGLYYFNAMTQIYNLTPGIEHYGCMVDLLGRANLLVEAEKFIRTLPI 498

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D ++W SLL +CR HGN  +    A  + ELEP        +SN Y+    +    ++
Sbjct: 499 QPDVVIWRSLLFACRNHGNIELAEFAAKQIEELEPRRCGARVLLSNVYASASRWGDVKRV 558

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R+    +++ +  G S +E++
Sbjct: 559 RKDMATQRIKKQPGCSFVEID 579



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 176/347 (50%), Gaps = 5/347 (1%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           ++ LF ++   ++ ++N +     +   P + + LY+ M+ +G      +F  VL  C+ 
Sbjct: 80  SRTLFFQIHKPNVFSWNFMFRAYSRSSFPAETIALYNLMLRNGTLPDNYSFPFVLKACAR 139

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLATWN 180
                +G +IH   L LG  L++++ + L+  +   G    A  +FD LP   R++ +WN
Sbjct: 140 LSLLHKGREIHSSTLKLGVHLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWN 199

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            M+  + +  R +  L+++ ++  +G + P+ ++    +  C    LLD GK++H     
Sbjct: 200 SMISGYLQSHRYELALKVFWELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTG 259

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+V +++FV ++L+D YS CG + +A+K FD IP  + + W S+++ YA  DL  +A+E
Sbjct: 260 SGFV-LDVFVGSSLIDMYSKCGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIE 318

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  MQ+        +    L+     G +  G+ IH Y  +   +   ++ ++AL  MY
Sbjct: 319 LFREMQIGGFAADAATIACVLSACGHWGALAQGRWIHLYCERNSIEM-DLNARNALIGMY 377

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            KC  I+ ++ +F       +   +++++ L  +G    A+ +F  M
Sbjct: 378 SKCGDIQKALEIFHGLTQPDIFSWSAVISGLAMNGESDKALHLFSQM 424



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/369 (25%), Positives = 177/369 (47%), Gaps = 16/369 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQALYLY 98
            L+++  N  I  F   G + +A+ +FD +PA  RD+V++N +ISG  +    + AL ++
Sbjct: 159 HLDVFVQNALISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMISGYLQSHRYELALKVF 218

Query: 99  DEMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
            E++  G +     T  S LSVC   G    G +IH      GF L++++GS L+D+Y +
Sbjct: 219 WELLGDGSLSPDEVTLVSALSVCGRLGLLDLGKKIHGLFTGSGFVLDVFVGSSLIDMYSK 278

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +FD +P RN   W  M+  + +     E + ++ +M+  G   +  +   +
Sbjct: 279 CGQIEDARKVFDRIPHRNTVCWTSMIAGYAQSDLFKEAIELFREMQIGGFAADAATIACV 338

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C     L +G+ +H +  +   +++++   NAL+  YS CG + +A + F  +   D
Sbjct: 339 LSACGHWGALAQGRWIHLYCERNS-IEMDLNARNALIGMYSKCGDIQKALEIFHGLTQPD 397

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNV-----YF 331
           + SW++++S  A       AL LF +M++    RP+  +F+  L   +  G V     YF
Sbjct: 398 IFSWSAVISGLAMNGESDKALHLFSQMEMISDIRPNEITFLGVLCACNHGGFVDKGLYYF 457

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSL 390
                 Y    G +H        + D+ G+ N++  +     + P +  +    SL+ + 
Sbjct: 458 NAMTQIYNLTPGIEH-----YGCMVDLLGRANLLVEAEKFIRTLPIQPDVVIWRSLLFAC 512

Query: 391 LHSGNIKDA 399
            + GNI+ A
Sbjct: 513 RNHGNIELA 521



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 38/155 (24%), Positives = 69/155 (44%), Gaps = 7/155 (4%)

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGH---IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           AI SG   +  VS  L+  Y    H      S  +F +I  PNV  +  +   YSR+   
Sbjct: 51  AIASGVFRDPVVSSKLL--YYSLSHDHDFAFSRTLFFQIHKPNVFSWNFMFRAYSRSSFP 108

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            E + +  +M++ G +PD  +F  VL  C    ++ +G+ + +S   + G+  D    + 
Sbjct: 109 AETIALYNLMLRNGTLPDNYSFPFVLKACARLSLLHKGREIHSSTLKL-GVHLDVFVQNA 167

Query: 560 MIDMLGRAGILDKAEELLQQTPG-GGDCMMWSSLL 593
           +I      G ++ A  +    P    D + W+S++
Sbjct: 168 LISAFSSCGAVEAARAVFDMLPALVRDVVSWNSMI 202


>gi|225435444|ref|XP_002282803.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g40720-like [Vitis vinifera]
          Length = 854

 Score =  285 bits (728), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 190/669 (28%), Positives = 332/669 (49%), Gaps = 16/669 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           L P  RT+  L   C     L     +  YC  N    ++ SN  +   +   +L    +
Sbjct: 150 LRPNSRTMVALLLACEGASELRLGRGVHGYCLRN---GMFDSNPHVATALIGFYLRFDMR 206

Query: 66  ----LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
               LFD M  R++V++N +ISG        +AL L+ +M+   +K    T    +  C+
Sbjct: 207 VLPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACA 266

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
             G    G QIH   +   F  +LYI + L+++Y   G    +  LF+ +P R+   WN 
Sbjct: 267 ELGSLKLGKQIHQLAIKFEFVEDLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNS 326

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKL 240
           M+ A+      +E + ++ +M++EGV+ +  +   M+  C  +   L +GK LH+HVIK 
Sbjct: 327 MISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKS 386

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G + ++  + NAL+  Y+    +   +K FD +   D+ISWN+++   A   L   A EL
Sbjct: 387 G-MRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACEL 445

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F RM+    +P+  + +  L        + FG+ IHGYV K   +     +++AL DMY 
Sbjct: 446 FERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMKHSIEINQ-PLRTALADMYM 504

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
            C    ++  +FE  P R L   N+++ S + +     A+ +F  M+ E    + VT+  
Sbjct: 505 NCGDEATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISEA-EPNSVTIIN 563

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFES--NIAVSCSLMDAYSRCGHIELSHQVFEKI 478
            L   S +  A L   + LH    + GF    +++++ + +  Y+RCG ++ +  +F+ +
Sbjct: 564 VLS--SFTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTL 621

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           P  N++ + +++ GY  NG G +A+     M++ G  P+ VTF+ VL+ C+HSG ++ G 
Sbjct: 622 PKRNIISWNAMIAGYGMNGRGSDAMLAFSQMLEDGFRPNGVTFVSVLSACSHSGFIEMGL 681

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
            +F+SM   + +  +  HYSC++D+L R G +D+A E +   P   D  +W +LL SCR 
Sbjct: 682 QLFHSMVQDFNVTPELVHYSCIVDLLARGGCIDEAREFIDSMPIEPDASVWRALLSSCRA 741

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           + +    + +   L +LEP++   Y  +SN Y+  G +    +IR     + L +  G S
Sbjct: 742 YSDAKQAKTIFEKLDKLEPMNAGNYVLLSNVYATAGLWLEVRRIRTWLKEKGLRKPPGIS 801

Query: 659 LIEV-NSCH 666
            I V N  H
Sbjct: 802 WIIVKNQVH 810



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 142/554 (25%), Positives = 266/554 (48%), Gaps = 10/554 (1%)

Query: 50  TIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            +D + K G +  A+ +FD M  RD+V +N ++ G   +   ++A+ L  EM    ++ +
Sbjct: 94  VVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCYEEAMLLVREMGRENLRPN 153

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           + T  ++L  C  A     G  +H   L  G F  N ++ + L+  Y+R    V  L LF
Sbjct: 154 SRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATALIGFYLRFDMRVLPL-LF 212

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D +  RN+ +WN M+  + ++    + L ++ +M  + V+ + ++    V+ C+    L 
Sbjct: 213 DLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFDCVTMLVAVQACAELGSLK 272

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            GKQ+H   IK  +V+ ++++ NAL++ YS  GSL  + + F+ +P  D   WNS++S Y
Sbjct: 273 LGKQIHQLAIKFEFVE-DLYILNALLNMYSNNGSLESSHQLFESVPNRDAPLWNSMISAY 331

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN-VYFGKQIHGYVTKLGFDHG 347
           A +    +A++LF RMQ    +   R+ V  L+      + +  GK +H +V K G    
Sbjct: 332 AAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGLLKGKSLHAHVIKSGM-RI 390

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
              + +AL  MY + N +ES   +F+   G  +   N+++ +L  +     A E+F  M 
Sbjct: 391 DASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILALARNTLRAQACELFERMR 450

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           +  I  +  T+ + L A       + G  R +H   +K   E N  +  +L D Y  CG 
Sbjct: 451 ESEIKPNSYTIISILAACEDVTCLDFG--RSIHGYVMKHSIEINQPLRTALADMYMNCGD 508

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
              +  +FE  P  +++ + +++  Y +N    +AL +   MI     P+ VT + VL+ 
Sbjct: 509 EATARDLFEGCPDRDLISWNAMIASYVKNNQAHKALLLFHRMISEAE-PNSVTIINVLSS 567

Query: 528 CNHSGMVKEGQLVFNSM-KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
             H   + +GQ +   + +  + +  D    +  I M  R G L  AE + +  P   + 
Sbjct: 568 FTHLATLPQGQSLHAYVTRRGFSLGLDLSLANAFITMYARCGSLQSAENIFKTLP-KRNI 626

Query: 587 MMWSSLLRSCRVHG 600
           + W++++    ++G
Sbjct: 627 ISWNAMIAGYGMNG 640



 Score =  182 bits (462), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 133/561 (23%), Positives = 265/561 (47%), Gaps = 12/561 (2%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           +D   +N +I      ++ +  L  Y +M S G+  + +T   VL  C+       G  I
Sbjct: 16  KDPKHWNSVIKHQANLKNDQAILSAYTQMESLGVLPNNTTLPLVLKACAAQNAVERGKSI 75

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  +       ++ +G+ +VD Y + G    A  +FD + +R++  WN M+  +      
Sbjct: 76  HRSIQGTDLMDDVRVGTAVVDFYCKCGFVEDARCVFDAMSDRDVVLWNAMVYGYVGWGCY 135

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           +E + +  +M  E + PN  +   ++  C     L  G+ +H + ++ G  D N  VA A
Sbjct: 136 EEAMLLVREMGRENLRPNSRTMVALLLACEGASELRLGRGVHGYCLRNGMFDSNPHVATA 195

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L+ FY      +     FD + V +++SWN+++S Y D    F ALELF +M +   +  
Sbjct: 196 LIGFYLRFDMRV-LPLLFDLMVVRNIVSWNAMISGYYDVGDYFKALELFVQMLVDEVKFD 254

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             + +  +   +  G++  GKQIH    K  F    +++ +AL +MY     +ESS  +F
Sbjct: 255 CVTMLVAVQACAELGSLKLGKQIHQLAIKFEFVE-DLYILNALLNMYSNNGSLESSHQLF 313

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           ES P R     NS++++    G  ++A+++F  M  EG+  DE T+   L      AS  
Sbjct: 314 ESVPNRDAPLWNSMISAYAAFGCHEEAMDLFIRMQSEGVKKDERTVVIMLSMCEELASGL 373

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
           L   + LH   IKSG   + ++  +L+  Y+    +E   ++F+++   +++ + +++  
Sbjct: 374 LKG-KSLHAHVIKSGMRIDASLGNALLSMYTELNCVESVQKIFDRMKGVDIISWNTMILA 432

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552
            +RN +  +A ++ E M +  + P+  T + +LA C     +  G+ +   +   + I+ 
Sbjct: 433 LARNTLRAQACELFERMRESEIKPNSYTIISILAACEDVTCLDFGRSIHGYVMK-HSIEI 491

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL----RSCRVHGNEIIGRRV 608
           ++   + + DM    G    A +L +  P   D + W++++    ++ + H   ++  R 
Sbjct: 492 NQPLRTALADMYMNCGDEATARDLFEGCP-DRDLISWNAMIASYVKNNQAHKALLLFHR- 549

Query: 609 ANILMELEPVDFAVYSQVSNF 629
             ++ E EP    + + +S+F
Sbjct: 550 --MISEAEPNSVTIINVLSSF 568


>gi|186512044|ref|NP_001119013.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635616|sp|P0C8Q2.1|PP323_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g19191, mitochondrial; Flags: Precursor
 gi|332658758|gb|AEE84158.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 170/599 (28%), Positives = 290/599 (48%), Gaps = 25/599 (4%)

Query: 77  TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRV 136
            +NL I        P ++L L+ EM   G + +  TF  V   C+          +H  +
Sbjct: 19  AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 78

Query: 137 LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
           +   F  ++++G+  VD++++      A  +F+ +PER+  TWN ML  FC+    D+  
Sbjct: 79  IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAF 138

Query: 197 RMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256
            ++ +M+   + P+ ++   +++  S    L   + +H+  I+LG VDV + VAN  +  
Sbjct: 139 SLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLG-VDVQVTVANTWIST 197

Query: 257 YSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
           Y  CG L  AK  F+ I   D  V+SWNS+   Y+ +   FDA  L+  M     +P + 
Sbjct: 198 YGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLS 257

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           +F+           +  G+ IH +   LG D   +   +    MY K     S+  +F+ 
Sbjct: 258 TFINLAASCQNPETLTQGRLIHSHAIHLGTDQ-DIEAINTFISMYSKSEDTCSARLLFDI 316

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS-------- 426
              R+      +++     G++ +A+ +F  M+  G   D VTL + +            
Sbjct: 317 MTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG 376

Query: 427 --VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
             + A A++  C+             N+ +  +L+D YS+CG I  +  +F+  P   VV
Sbjct: 377 KWIDARADIYGCK-----------RDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVV 425

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T+++ GY+ NG+  EAL +   MI     P+ +TFL VL  C HSG +++G   F+ M
Sbjct: 426 TWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIM 485

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           K VY I     HYSCM+D+LGR G L++A EL++      D  +W +LL +C++H N  I
Sbjct: 486 KQVYNISPGLDHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKI 545

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             + A  L  LEP   A Y +++N Y+  G ++   +IR     R + +  G S+I+VN
Sbjct: 546 AEQAAESLFNLEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVN 604



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 123/568 (21%), Positives = 247/568 (43%), Gaps = 43/568 (7%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T   +A  C  +  +    ++ ++   +P   +++    T+D FVK   ++ A K+
Sbjct: 50  PNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKV 109

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F+ MP RD  T+N ++SG  +  H  +A  L+ EM  + I   + T  +++   S     
Sbjct: 110 FERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSL 169

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLATWNLMLR 184
                +H   + LG  + + + +  +  Y + G    A  +F+ +   +R + +WN M +
Sbjct: 170 KLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFK 229

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           A+       +   +Y  M  E  +P+  +F  +   C     L +G+ +HSH I LG  D
Sbjct: 230 AYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLG-TD 288

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            +I   N  +  YS       A+  FD +     +SW  ++S YA+   + +AL LF  M
Sbjct: 289 QDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAM 348

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
               ++P + + +  ++   + G++  GK I       G    +V + +AL DMY KC  
Sbjct: 349 IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGS 408

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           I  +  +F++ P +++    +++     +G   +A+++F  M+D     + +T    L+A
Sbjct: 409 IHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQA 468

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +             H  +++ G+E                 +  +  QV+    SP + 
Sbjct: 469 CA-------------HSGSLEKGWE-----------------YFHIMKQVYN--ISPGLD 496

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            ++ +++   R G   EAL+++  M  +   PD   +  +L  C     VK  +    + 
Sbjct: 497 HYSCMVDLLGRKGKLEEALELIRNMSAK---PDAGIWGALLNACKIHRNVKIAE---QAA 550

Query: 545 KSVYGIDADRQH-YSCMIDMLGRAGILD 571
           +S++ ++      Y  M ++   AG+ D
Sbjct: 551 ESLFNLEPQMAAPYVEMANIYAAAGMWD 578


>gi|147846491|emb|CAN79511.1| hypothetical protein VITISV_014157 [Vitis vinifera]
          Length = 1007

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 176/595 (29%), Positives = 312/595 (52%), Gaps = 14/595 (2%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           + N   D ++K+G L+SA  +FD M +RD V++N++I G          L+ + +     
Sbjct: 86  TGNSXXDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLSRGASDXGLWWFRQARVIA 145

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
            + + ST    +  C + G   EG+++H  ++  GF     + + L+ +Y       RA 
Sbjct: 146 FEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYAD-NDMERAE 204

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIG 224
           +LFDE+ ER++ +W++M+  + +       L+++ +M +   +E +G++   +++ C+  
Sbjct: 205 ELFDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLKACANT 264

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             +  G+ +H  VI  G +D ++FV N+++D YS       A K+F+ +P  + +SWNSI
Sbjct: 265 GDISMGRSVHGVVICRG-LDYDLFVGNSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSI 323

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S     +   +AL LF+ M     R    + V  L       + +  K IH  V + G+
Sbjct: 324 ISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGY 383

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +     + S L D Y KC++IE +  +F+    +     ++++    H G   +A+ +F 
Sbjct: 384 ELNEFVINS-LIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQ 442

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M       + VT+ + L+A SVSA  +L   +  H   I+ G  + +AV  +++D Y++
Sbjct: 443 EMNQAQEKPNGVTILSLLEAFSVSA--DLKRSKWAHGIXIRRGLAAEVAVGTAILDMYAK 500

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I LS + F++IP  N+V + +++     NG+ R+AL +L  M   GL P+ VT L V
Sbjct: 501 CGEIGLSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSV 560

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--- 581
           L+ C+H G+V+EG   F +M   +G++   +HYSCM+DML RAG L+ A  L+++ P   
Sbjct: 561 LSACSHGGLVEEGLSFFENMVQDHGVEPGLEHYSCMVDMLXRAGKLNXAMNLIEKMPERM 620

Query: 582 --GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
             G G   +W +LL +CR  GN  +G   A  ++ LEP   A Y   S+ Y+  G
Sbjct: 621 RDGAG---LWGALLSACRSSGNSRLGAGAAXRVLXLEPQSSAGYFLASSMYAASG 672



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 145/552 (26%), Positives = 264/552 (47%), Gaps = 21/552 (3%)

Query: 72  ARDMVTYNLLI--SGCGKFRHPKQALYLYDEMVSHGIKESASTF-SSVLSVCSNAGFYTE 128
           A  +  +NL I  S   K+    +A   Y +M   G + +  T   S+L  CS+      
Sbjct: 9   APKLPNWNLGIKDSTNRKWWDSWEACSRYHQMKKAGAQLTDPTLVHSILKACSSLPV-RH 67

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  IH  +L  GF      G+   D YM+ G    AL +FD +  R+  +WN+M+     
Sbjct: 68  GKSIHASLLKQGFDSLTSTGNSXXDFYMKTGALDSALFVFDSMRSRDSVSWNIMIHGHLS 127

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
               D  L  + + +    EPN  +    +  C     ++EG ++H ++I+ G++D+   
Sbjct: 128 RGASDXGLWWFRQARVIAFEPNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPS- 186

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V N+L+  Y A   +  A++ FD +   DVISW+ ++  Y        AL+LF  M    
Sbjct: 187 VQNSLLSMY-ADNDMERAEELFDEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMX--- 242

Query: 309 KRPSIR----SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
               I     + V  L   + TG++  G+ +HG V   G D+  + V +++ DMY K + 
Sbjct: 243 SNAXIELDGITMVSVLKACANTGDISMGRSVHGVVICRGLDY-DLFVGNSIIDMYSKXDD 301

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
            ES+   F   P R+    NS+++ L+ +    +A+ +F  M   G   DEVTL   L+ 
Sbjct: 302 HESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQ- 360

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            S     +   C+ +H   I+ G+E N  V  SL+DAYS+C  IEL+ ++F+++ + + V
Sbjct: 361 -SCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRLKTKDTV 419

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +++++ G++  G   EA+ + + M Q    P+ VT L +L   + S  +K  +   + +
Sbjct: 420 SWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLKRSKWA-HGI 478

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
               G+ A+    + ++DM  + G +  + +   Q P   + + W +++ +C ++G   +
Sbjct: 479 XIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIP-EKNIVSWGAMIAACGMNG---L 534

Query: 605 GRRVANILMELE 616
            R    +L E++
Sbjct: 535 ARDALALLSEMK 546



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 119/473 (25%), Positives = 221/473 (46%), Gaps = 4/473 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P V T+      C S+  +   L +  Y   +  L+I S   ++        +  A++LF
Sbjct: 148 PNVSTLVLAIHACRSLGAMEEGLKMHGYIIRSGFLDIPSVQNSLLSMYADNDMERAEELF 207

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAGFY 126
           DEM  RD+++++++I G  +      AL L+ EM S+  I+    T  SVL  C+N G  
Sbjct: 208 DEMCERDVISWSVMIGGYVQTGEAXMALQLFLEMXSNAXIELDGITMVSVLKACANTGDI 267

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           + G  +H  V+  G   +L++G+ ++D+Y +      A   F+E+P RN  +WN ++   
Sbjct: 268 SMGRSVHGVVICRGLDYDLFVGNSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSIISGL 327

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
               +  E L ++  M   G   + ++   +++ C   +   + K +HS VI+ G+ ++N
Sbjct: 328 VRTEKHSEALSLFYSMGKAGFRADEVTLVNLLQSCKYFVDPFQCKFIHSIVIRWGY-ELN 386

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
            FV N+L+D YS C  +  A K FD +   D +SW+++++ +       +A+ LF  M  
Sbjct: 387 EFVINSLIDAYSKCDLIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQ 446

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
            +++P+  + +  L   S + ++   K  HG   + G     V V +A+ DMY KC  I 
Sbjct: 447 AQEKPNGVTILSLLEAFSVSADLKRSKWAHGIXIRRGL-AAEVAVGTAILDMYAKCGEIG 505

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            S   F+  P +++    +++ +   +G  +DA+ +   M   G+  + VT  + L A S
Sbjct: 506 LSRKAFDQIPEKNIVSWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSACS 565

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
                  G            G E  +     ++D   R G +  +  + EK+P
Sbjct: 566 HGGLVEEG-LSFFENMVQDHGVEPGLEHYSCMVDMLXRAGKLNXAMNLIEKMP 617



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 94/364 (25%), Positives = 174/364 (47%), Gaps = 20/364 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  ID + K     SA K F+EMP R+ V++N +ISG  +     +AL L+  M 
Sbjct: 285 DLFVGNSIIDMYSKXDDHESAFKAFNEMPCRNTVSWNSIISGLVRTEKHSEALSLFYSMG 344

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQ---IHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
             G +    T  ++L  C    ++ +  Q   IH  V+  G+ LN ++ + L+D Y +  
Sbjct: 345 KAGFRADEVTLVNLLQSCK---YFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCD 401

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LFD L  ++  +W+ M+  F    +PDE + ++ +M     +PNG++   ++ 
Sbjct: 402 LIELAWKLFDRLKTKDTVSWSAMIAGFNHCGKPDEAIALFQEMNQAQEKPNGVTILSLLE 461

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             S+   L   K  H   I+ G +   + V  A++D Y+ CG +  ++K+FD IP  +++
Sbjct: 462 AFSVSADLKRSKWAHGIXIRRG-LAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIV 520

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQ 334
           SW ++++      L  DAL L   M+L   +P+  + +  L+  S  G V     +F   
Sbjct: 521 SWGAMIAACGMNGLARDALALLSEMKLHGLKPNXVTTLSVLSACSHGGLVEEGLSFFENM 580

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE---CCNSLMTSLL 391
           +  +  + G +H      S + DM  +   +  ++ + E  P R  +      +L+++  
Sbjct: 581 VQDHGVEPGLEH-----YSCMVDMLXRAGKLNXAMNLIEKMPERMRDGAGLWGALLSACR 635

Query: 392 HSGN 395
            SGN
Sbjct: 636 SSGN 639



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 130/282 (46%), Gaps = 10/282 (3%)

Query: 12  TITTLAPTCTSIV-PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+  L  +C   V P     +     +   +LN +  N  ID + K   +  A KLFD +
Sbjct: 354 TLVNLLQSCKYFVDPFQCKFIHSIVIRWGYELNEFVINSLIDAYSKCDLIELAWKLFDRL 413

Query: 71  PARDMVTYNLLISG---CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
             +D V+++ +I+G   CGK   P +A+ L+ EM     K +  T  S+L   S +    
Sbjct: 414 KTKDTVSWSAMIAGFNHCGK---PDEAIALFQEMNQAQEKPNGVTILSLLEAFSVSADLK 470

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
                H   +  G    + +G+ ++D+Y + G    +   FD++PE+N+ +W  M+ A  
Sbjct: 471 RSKWAHGIXIRRGLAAEVAVGTAILDMYAKCGEIGLSRKAFDQIPEKNIVSWGAMIAACG 530

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 + L + ++MK  G++PN ++   ++  CS G L++EG     ++++   V+  +
Sbjct: 531 MNGLARDALALLSEMKLHGLKPNXVTTLSVLSACSHGGLVEEGLSFFENMVQDHGVEPGL 590

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVS 286
              + +VD     G L  A    + +P    D    W +++S
Sbjct: 591 EHYSCMVDMLXRAGKLNXAMNLIEKMPERMRDGAGLWGALLS 632


>gi|225462731|ref|XP_002267928.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|302143682|emb|CBI22543.3| unnamed protein product [Vitis vinifera]
          Length = 728

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 195/665 (29%), Positives = 325/665 (48%), Gaps = 66/665 (9%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           I S+N  I ++ K   L+ A++LFD+MP R +V++N +IS   K     +AL+L   M  
Sbjct: 32  IISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR 91

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
             +K S STFSSVLSVC+      +G  IHC VL  G      +GS L+  Y        
Sbjct: 92  SHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGE 151

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV---------------- 207
           A  +FD L  RN   W+LML  +   +  D+ L ++ KM    V                
Sbjct: 152 ARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDG 211

Query: 208 -----------------EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                             PN  +F  +VR C    +L  G+ +H  ++K G ++ +  + 
Sbjct: 212 CGKALEIFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCG-LEYDPSIG 270

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALV+FY  C ++ +A +    +    + + NS++        I DA EL F        
Sbjct: 271 GALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDA-ELVF-------- 321

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG----------SVHVQSALTDMYG 360
                     N  +    V +   I GY      D            ++   + +  +Y 
Sbjct: 322 ----------NGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYS 371

Query: 361 KCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           +   I+ ++ +FE     +     NS+++  +HSG  ++A++++  M    I   + T S
Sbjct: 372 RNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFS 431

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
               A S   S + G  +LLH   IK+ FESN+ V  SL+D YS+CG I  +   F  I 
Sbjct: 432 ALFHACSCLGSLHQG--QLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIF 489

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           SPNV  +T+++NG++ +G+G EA+ + + MI++GL P+  TF+ VL+ C+ +G+V EG  
Sbjct: 490 SPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMK 549

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +F+SM+  Y +    +HY+C++D+LGR+G + +AEE +++ P   D ++W +LL +C   
Sbjct: 550 IFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFW 609

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            +  +G RVA  +   +P   + Y  +SN Y+ +G +   M +R+     K+ +D G S 
Sbjct: 610 MDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSW 669

Query: 660 IEVNS 664
           IE+N+
Sbjct: 670 IELNN 674



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 141/280 (50%), Gaps = 14/280 (5%)

Query: 21  TSIVPLSSSLLLDSYC------------QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFD 68
           T + P+S +L++  Y             +  P   I+SSN  I  + ++G ++ A +LF+
Sbjct: 325 TEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFE 384

Query: 69  EMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
           E    +D VT+N +ISG      P++AL LY  M    I+++ STFS++   CS  G   
Sbjct: 385 ETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTQSTFSALFHACSCLGSLH 444

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
           +G  +H  ++   F  N+Y+G+ L+D+Y + G  + A   F  +   N+A W  ++    
Sbjct: 445 QGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHA 504

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 E + ++++M  +G+ PNG +F  ++  CS   L++EG ++   + +   V   +
Sbjct: 505 YHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTL 564

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
                +VD     G + EA++    +P++ D + W +++S
Sbjct: 565 EHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLS 604



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T + L   C+ +  L    LL ++    P + N+Y     ID + K G +  A+  F  +
Sbjct: 429 TFSALFHACSCLGSLHQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSI 488

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
            + ++  +  LI+G        +A+ L+D M+  G+  + +TF  VLS CS AG   EG+
Sbjct: 489 FSPNVAAWTALINGHAYHGLGSEAISLFDRMIEQGLAPNGATFVGVLSACSRAGLVNEGM 548

Query: 131 QI-HC--RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           +I H   R  S+   L  Y  + +VDL  R G    A +   ++P E +   W  +L A
Sbjct: 549 KIFHSMERCYSVTPTLEHY--ACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSA 605


>gi|15242550|ref|NP_196557.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75170796|sp|Q9FIB2.1|PP373_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At5g09950
 gi|9758973|dbj|BAB09416.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332004087|gb|AED91470.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 995

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 191/667 (28%), Positives = 340/667 (50%), Gaps = 19/667 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQ---LNIYSSNRTIDDFVKSGHLNSAK 64
           P   T  +L  T  S+      LL    C         +++  +  +  F KSG L+ A+
Sbjct: 204 PTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGLLTDLFVGSGLVSAFAKSGSLSYAR 263

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K+F++M  R+ VT N L+ G  + +  ++A  L+ +M S  I  S  ++  +LS      
Sbjct: 264 KVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSM-IDVSPESYVILLSSFPEYS 322

Query: 125 FYTE-----GIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
              E     G ++H  V++ G     + IG+ LV++Y + G    A  +F  + +++  +
Sbjct: 323 LAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVS 382

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+    +     E +  Y  M+   + P   +    +  C+       G+Q+H   +
Sbjct: 383 WNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQIHGESL 442

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL-IFDA 297
           KLG +D+N+ V+NAL+  Y+  G L E +K F  +P  D +SWNSI+   A  +  + +A
Sbjct: 443 KLG-IDLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEA 501

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           +  F   Q   ++ +  +F   L+  S       GKQIHG   K      +   ++AL  
Sbjct: 502 VVCFLNAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEAT-TENALIA 560

Query: 358 MYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            YGKC  ++    +F   A  R     NS+++  +H+  +  A+++  FM+  G  LD  
Sbjct: 561 CYGKCGEMDGCEKIFSRMAERRDNVTWNSMISGYIHNELLAKALDLVWFMLQTGQRLDSF 620

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
             +T L A +  A+   G    +H C++++  ES++ V  +L+D YS+CG ++ + + F 
Sbjct: 621 MYATVLSAFASVATLERG--MEVHACSVRACLESDVVVGSALVDMYSKCGRLDYALRFFN 678

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVK 535
            +P  N   + S+++GY+R+G G EAL + E M   G  P D VTF+ VL+ C+H+G+++
Sbjct: 679 TMPVRNSYSWNSMISGYARHGQGEEALKLFETMKLDGQTPPDHVTFVGVLSACSHAGLLE 738

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG   F SM   YG+    +H+SCM D+LGRAG LDK E+ +++ P   + ++W ++L +
Sbjct: 739 EGFKHFESMSDSYGLAPRIEHFSCMADVLGRAGELDKLEDFIEKMPMKPNVLIWRTVLGA 798

Query: 596 -CRVHGNEI-IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
            CR +G +  +G++ A +L +LEP +   Y  + N Y+  G +E  ++ R+      + +
Sbjct: 799 CCRANGRKAELGKKAAEMLFQLEPENAVNYVLLGNMYAAGGRWEDLVKARKKMKDADVKK 858

Query: 654 DIGHSLI 660
           + G+S +
Sbjct: 859 EAGYSWV 865



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 156/643 (24%), Positives = 310/643 (48%), Gaps = 33/643 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  N  I+ ++++G   SA+K+FDEMP R+ V++  ++SG  +    K+AL    +MV
Sbjct: 35  DVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGEHKEALVFLRDMV 94

Query: 103 SHGIKESASTFSSVLSVCSNAGFY--TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR-MG 159
             GI  +   F SVL  C   G      G QIH  +  L + ++  + + L+ +Y + +G
Sbjct: 95  KEGIFSNQYAFVSVLRACQEIGSVGILFGRQIHGLMFKLSYAVDAVVSNVLISMYWKCIG 154

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV- 218
               AL  F ++  +N  +WN ++  + +        R+++ M+ +G  P   +F  +V 
Sbjct: 155 SVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQYDGSRPTEYTFGSLVT 214

Query: 219 RGCSIG----MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             CS+      LL+   Q+   + K G +  ++FV + LV  ++  GSL  A+K F+ + 
Sbjct: 215 TACSLTEPDVRLLE---QIMCTIQKSGLL-TDLFVGSGLVSAFAKSGSLSYARKVFNQME 270

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQ-LCRKRPS-----IRSFVEFLNFASRTGN 328
             + ++ N ++          +A +LF  M  +    P      + SF E+ + A   G 
Sbjct: 271 TRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPESYVILLSSFPEY-SLAEEVG- 328

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  G+++HG+V   G     V + + L +MY KC  I  +  VF     +     NS++T
Sbjct: 329 LKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTDKDSVSWNSMIT 388

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
            L  +G   +AVE +  M    I     TL ++L + +    A LG  + +H  ++K G 
Sbjct: 389 GLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLG--QQIHGESLKLGI 446

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           + N++VS +LM  Y+  G++    ++F  +P  + V + SI+   +R+        +  +
Sbjct: 447 DLNVSVSNALMTLYAETGYLNECRKIFSSMPEHDQVSWNSIIGALARSERSLPEAVVCFL 506

Query: 509 MIQR-GLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGR 566
             QR G   +++TF  VL+  +     + G+ +   ++K+    +A  ++   +I   G+
Sbjct: 507 NAQRAGQKLNRITFSSVLSAVSSLSFGELGKQIHGLALKNNIADEATTEN--ALIACYGK 564

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP---VDFAVY 623
            G +D  E++  +     D + W+S++ S  +H NE++ + +  +   L+    +D  +Y
Sbjct: 565 CGEMDGCEKIFSRMAERRDNVTWNSMI-SGYIH-NELLAKALDLVWFMLQTGQRLDSFMY 622

Query: 624 SQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEVNS 664
           + V + ++ +   E  M++   ++   L  D  +G +L+++ S
Sbjct: 623 ATVLSAFASVATLERGMEVHACSVRACLESDVVVGSALVDMYS 665



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 217/474 (45%), Gaps = 20/474 (4%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
            H R+       ++Y+ + L++ Y+  G SV A  +FDE+P RN  +W  ++  +     
Sbjct: 23  FHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGYSRNGE 82

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGC----SIGMLLDEGKQLHSHVIKLGWVDVNI 247
             E L     M  EG+  N  +F  ++R C    S+G+L   G+Q+H  + KL +  V+ 
Sbjct: 83  HKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSVGILF--GRQIHGLMFKLSYA-VDA 139

Query: 248 FVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
            V+N L+  Y  C GS+  A  +F  I V + +SWNSI+S+Y+       A  +F  MQ 
Sbjct: 140 VVSNVLISMYWKCIGSVGYALCAFGDIEVKNSVSWNSIISVYSQAGDQRSAFRIFSSMQY 199

Query: 307 CRKRPSIRSFVEFLNFASR--TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
              RP+  +F   +  A      +V   +QI   + K G     + V S L   + K   
Sbjct: 200 DGSRPTEYTFGSLVTTACSLTEPDVRLLEQIMCTIQKSGL-LTDLFVGSGLVSAFAKSGS 258

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF---GFMVDEGIGLDEVTLSTT 421
           +  +  VF     R+    N LM  L+     ++A ++F     M+D       V L ++
Sbjct: 259 LSYARKVFNQMETRNAVTLNGLMVGLVRQKWGEEATKLFMDMNSMIDVSPE-SYVILLSS 317

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
               S++    L   R +H   I +G  +  + +   L++ Y++CG I  + +VF  +  
Sbjct: 318 FPEYSLAEEVGLKKGREVHGHVITTGLVDFMVGIGNGLVNMYAKCGSIADARRVFYFMTD 377

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            + V + S++ G  +NG   EA++  + M +  ++P   T +  L+ C      K GQ +
Sbjct: 378 KDSVSWNSMITGLDQNGCFIEAVERYKSMRRHDILPGSFTLISSLSSCASLKWAKLGQQI 437

Query: 541 F-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
              S+K   GID +    + ++ +    G L++  ++    P   D + W+S++
Sbjct: 438 HGESLK--LGIDLNVSVSNALMTLYAETGYLNECRKIFSSMP-EHDQVSWNSII 488



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 32/101 (31%), Positives = 56/101 (55%)

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G+ R  H    K+  + ++ +  +L++AY   G    + +VF+++P  N V +  I++GY
Sbjct: 18  GAARFFHSRLYKNRLDKDVYLCNNLINAYLETGDSVSARKVFDEMPLRNCVSWACIVSGY 77

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           SRNG  +EAL  L  M++ G+  ++  F+ VL  C   G V
Sbjct: 78  SRNGEHKEALVFLRDMVKEGIFSNQYAFVSVLRACQEIGSV 118


>gi|147834283|emb|CAN67492.1| hypothetical protein VITISV_035978 [Vitis vinifera]
          Length = 814

 Score =  285 bits (728), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 195/693 (28%), Positives = 333/693 (48%), Gaps = 77/693 (11%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
            ++ +N  I  ++K   L  A K+FD MP RD V++N ++ G         A  L+D M 
Sbjct: 76  TVFVTNCLIQMYIKCSDLGFAFKVFDGMPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMP 135

Query: 102 -VSHGIKE-------------SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF------ 141
               G+ E               +TF+ VL  CS+   +  GIQIH   + +GF      
Sbjct: 136 GTGCGVVELFDFRMGRMGTVFDRTTFAVVLKSCSSLEDHGGGIQIHGLAVKMGFDCDVVT 195

Query: 142 --------------------GLNLY---------------------------IGSPLVDL 154
                               GL L+                           IG+  +D+
Sbjct: 196 GSALLDMYAKCCVQNDDLRGGLELFKEMQKAGVGALQLHGHALKTDFGTDVVIGTATLDM 255

Query: 155 YMRMGP-SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           YM+    S  +  LF+ LP  NL ++N ++  +    +  E L M+  ++  G+  + +S
Sbjct: 256 YMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSDKGIEALGMFRLLQKSGLGLDEVS 315

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
                R C++     EG Q+H   +K      NI VANA++D Y  CG+L+EA   F+ +
Sbjct: 316 LSGAXRACAVIKGDLEGLQVHGLSMK-SLCQSNICVANAILDMYGKCGALVEACLVFEEM 374

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              D +SWN+I++ +         L LF  M      P   ++   L   +    +  G 
Sbjct: 375 VSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGMEPDEFTYGSVLKACAGWQALNCGM 434

Query: 334 QIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           +IH  + K  +G D     V  AL DMY KC ++E +  + +    +++   N++++   
Sbjct: 435 EIHNRIIKSRMGLDS---FVGIALIDMYSKCGMMEKAEKLHDRLAEQTVVSWNAIISGFS 491

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
                ++A + F  M++ G+  D  T +T L   +   +  LG  + +H   IK   +S+
Sbjct: 492 LQKQSEEAQKTFSKMLEMGVDPDNFTYATILDTCANLVTVELG--KQIHAQIIKKELQSD 549

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             +S +L+D YS+CG+++    +FEK P+ + V + +++ GY+++G+G EAL + E M  
Sbjct: 550 AYISSTLVDMYSKCGNMQDFQLIFEKAPNRDFVTWNAMVCGYAQHGLGEEALKIFEYMQL 609

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
             + P+  TFL VL  C H G+V++G   F+SM S YG+D   +HYSC++D++GR+G + 
Sbjct: 610 ENVKPNHATFLAVLRACGHMGLVEKGLHYFHSMLSNYGLDPQLEHYSCVVDIMGRSGQVS 669

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           KA EL++  P   D ++W +LL  C++HGN  +  + A  +++LEP D A Y  +SN Y+
Sbjct: 670 KALELIEGMPFEADAVIWRTLLSXCKIHGNVEVAEKAAYSILQLEPEDSAAYVLLSNIYA 729

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             G +    ++R+      L ++ G S IE+ S
Sbjct: 730 NAGMWNEVTKLRKMMRFNGLKKEPGCSWIEIKS 762



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 139/579 (24%), Positives = 265/579 (45%), Gaps = 85/579 (14%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TFS +   CS+      G Q H R++   F   +++ + L+ +Y++      A  +FD 
Sbjct: 43  KTFSHIFQECSDRKALCPGKQAHARMILTEFKPTVFVTNCLIQMYIKCSDLGFAFKVFDG 102

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG---VEP------------NGLSFC 215
           +P+R+  +WN ML  +          ++++ M   G   VE             +  +F 
Sbjct: 103 MPQRDTVSWNAMLFGYAGRGDIGVAQKLFDAMPGTGCGVVELFDFRMGRMGTVFDRTTFA 162

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            +++ CS       G Q+H   +K+G+ D ++   +AL+D Y+ C            +  
Sbjct: 163 VVLKSCSSLEDHGGGIQIHGLAVKMGF-DCDVVTGSALLDMYAKC-----------CVQN 210

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           DD+                   LELF  MQ    +  + +                  Q+
Sbjct: 211 DDLRG----------------GLELFKEMQ----KAGVGAL-----------------QL 233

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVI-ESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           HG+  K  F    V + +A  DMY KCN + + S  +F S P  +L+  N+++     S 
Sbjct: 234 HGHALKTDFGTDVV-IGTATLDMYMKCNNLSDCSNQLFNSLPNHNLQSYNAIIVGYARSD 292

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
              +A+ MF  +   G+GLDEV+LS   +A +V    +L   + +H  ++KS  +SNI V
Sbjct: 293 KGIEALGMFRLLQKSGLGLDEVSLSGAXRACAV-IKGDLEGLQ-VHGLSMKSLCQSNICV 350

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           + +++D Y +CG +  +  VFE++ S + V + +I+  + +NG   + L +   M+Q G+
Sbjct: 351 ANAILDMYGKCGALVEACLVFEEMVSRDAVSWNAIIAAHEQNGNEEKTLSLFVWMLQSGM 410

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
            PD+ T+  VL  C     +  G  + N  +KS  G+D+       +IDM  + G+++KA
Sbjct: 411 EPDEFTYGSVLKACAGWQALNCGMEIHNRIIKSRMGLDSFVG--IALIDMYSKCGMMEKA 468

Query: 574 EE----LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL--EPVDFAVYSQVS 627
           E+    L +QT      + W++++    +       ++  + ++E+  +P +F  Y+ + 
Sbjct: 469 EKLHDRLAEQT-----VVSWNAIISGFSLQKQSEEAQKTFSKMLEMGVDPDNF-TYATIL 522

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEVNS 664
           +  + +   E+  QI    + ++L  D  I  +L+++ S
Sbjct: 523 DTCANLVTVELGKQIHAQIIKKELQSDAYISSTLVDMYS 561


>gi|347954542|gb|AEP33771.1| organelle transcript processing 82, partial [Thlaspi arvense]
          Length = 673

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 161/533 (30%), Positives = 287/533 (53%), Gaps = 35/533 (6%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +F  + E N   WN MLR +   S P   L++Y  M + G+ PN  +F ++++ C+ 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 224 GMLLDEGKQLHSHVIKLGWVD--------VNIFVAN----------------------AL 253
               +EG+Q+H HV+KLG+          ++++  N                      AL
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +  Y++ G++  A++ FD IPV DV+SWN+++S YA+     +ALELF  M     RP  
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            + V  L+  +++ +V  G+Q+H ++   GF   ++ + +AL D+Y KC  +E++  +FE
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHSWIDDHGFG-SNLKIVNALIDLYSKCGQVETACGLFE 257

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
               + +   N+L+    H    K+A+ +F  M+  G   ++VT+ + L A +   + ++
Sbjct: 258 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHLGAIDI 317

Query: 434 GSCRLLHCCAIKSGFESNIAVS--CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           G  R +H    K   +   A S   SL+D Y++CG IE +HQVF  +   ++  + +++ 
Sbjct: 318 G--RWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMIF 375

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G++ +G      D+   M + G+ PD +TF+ +L+ C+HSG +  G+ +F SM   Y I 
Sbjct: 376 GFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQDYDIT 435

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611
              +HY CMID+LG +G+  +A+E+++  P   D ++W SLL++CR HGN  +    A  
Sbjct: 436 PKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHGNLELAESFARN 495

Query: 612 LMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           LM++EP +   Y  +SN Y+  GE++   ++R     + + +  G S IE++S
Sbjct: 496 LMKVEPENPGSYVLLSNIYATAGEWDEVAKVRALLNGKGMKKVPGCSSIEIDS 548



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 120/473 (25%), Positives = 216/473 (45%), Gaps = 45/473 (9%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A  +F  +   + + +N ++ G      P  AL LY  M+S G+  ++ TF  +L  C+ 
Sbjct: 19  AISVFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAK 78

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP---------------------- 160
           +  + EG QIH  VL LG+  +LY+ + L+ +Y + G                       
Sbjct: 79  SKAFEEGQQIHGHVLKLGYEPDLYVHTSLISMYAQNGRLEDAHKVFDRSSHRDVVSYTAL 138

Query: 161 --------SVR-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
                   ++R A ++FDE+P +++ +WN M+  + E     E L ++ +M    V P+ 
Sbjct: 139 ITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRPDE 198

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----VNIFVANALVDFYSACGSLIEA 266
            +   ++  C+    ++ G+Q+HS      W+D      N+ + NAL+D YS CG +  A
Sbjct: 199 GTMVTVLSACAQSRSVELGRQVHS------WIDDHGFGSNLKIVNALIDLYSKCGQVETA 252

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
              F+ +   DV+SWN+++  Y   +L  +AL LF  M    + P+  + V  L   +  
Sbjct: 253 CGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACAHL 312

Query: 327 GNVYFGKQIHGYVTKLGFD-HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
           G +  G+ IH Y+ K   D   +  ++++L DMY KC  IE++  VF S   +SL   N+
Sbjct: 313 GAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNA 372

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++      G      ++F  M   GI  D++T    L A S S   +LG   +       
Sbjct: 373 MIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGR-HIFKSMTQD 431

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG 497
                 +     ++D     G  + + ++ + +P  P+ V + S++    R+G
Sbjct: 432 YDITPKLEHYGCMIDLLGHSGLFKEAKEMIKTMPMEPDGVIWCSLLKACRRHG 484



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 158/300 (52%), Gaps = 1/300 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +  SG++ SA+++FDE+P +D+V++N +ISG  +    K+AL L+ EM+
Sbjct: 131 DVVSYTALITGYASSGNIRSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMM 190

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++    T  +VLS C+ +     G Q+H  +   GFG NL I + L+DLY + G   
Sbjct: 191 KTNVRPDEGTMVTVLSACAQSRSVELGRQVHSWIDDHGFGSNLKIVNALIDLYSKCGQVE 250

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 251 TACGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTIVSILPACA 310

Query: 223 IGMLLDEGKQLHSHV-IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++  KL  V     +  +L+D Y+ CG +  A + F+ +    + SW
Sbjct: 311 HLGAIDIGRWIHVYIDKKLKDVTNAPSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 370

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +       +LF RM+     P   +FV  L+  S +G +  G+ I   +T+
Sbjct: 371 NAMIFGFAMHGRANAGFDLFSRMRKNGIEPDDITFVGLLSACSHSGKLDLGRHIFKSMTQ 430



 Score = 62.4 bits (150), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 43/192 (22%), Positives = 93/192 (48%), Gaps = 5/192 (2%)

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VF  I  PN + + +++ GY+ +     AL +  VMI  GL+P+  TF  +L  C  S  
Sbjct: 22  VFATIQEPNQLIWNTMLRGYALSSDPVSALKLYVVMISLGLLPNSYTFPFLLKSCAKSKA 81

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            +EGQ +   +  + G + D   ++ +I M  + G L+ A ++  ++    D + +++L+
Sbjct: 82  FEEGQQIHGHVLKL-GYEPDLYVHTSLISMYAQNGRLEDAHKVFDRS-SHRDVVSYTALI 139

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
                 GN    R    +  E+   D   ++ + + Y+E G ++ ++++ +  +   +  
Sbjct: 140 TGYASSGNI---RSAQEMFDEIPVKDVVSWNAMISGYAETGSYKEALELFKEMMKTNVRP 196

Query: 654 DIGHSLIEVNSC 665
           D G  +  +++C
Sbjct: 197 DEGTMVTVLSAC 208


>gi|413935694|gb|AFW70245.1| hypothetical protein ZEAMMB73_875976 [Zea mays]
          Length = 807

 Score =  285 bits (728), Expect = 8e-74,   Method: Compositional matrix adjust.
 Identities = 185/669 (27%), Positives = 321/669 (47%), Gaps = 48/669 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   L P   T+ ++   C ++  L           +     + +  N  +  + K G 
Sbjct: 133 MLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCGS 192

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A +LFD MP+ + V++  ++ G  +      AL L+  M   GI+      SSVL  
Sbjct: 193 VADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGA 252

Query: 120 CSNA--GFY--TEGIQ----IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           C+ A  G Y     IQ    IH  V+  GFG + ++G+ LVDLY +      A+ +F+ L
Sbjct: 253 CAQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESL 312

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
              ++ +WN+++  + +L   +  + +   M+  G EPN +++  M+  C          
Sbjct: 313 SSVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASC---------- 362

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
                 IK                       +  A+  FD IP   V +WN+++S Y   
Sbjct: 363 ------IK--------------------ARDVPSARAMFDKIPKPSVTTWNTLLSGYGQE 396

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           +L  + ++LF RMQ    +P   +    L+  SR GN   GKQ+H    +L   H  + V
Sbjct: 397 ELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELGKQVHSASVRL-LLHNDMFV 455

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            S L D+Y KC  +  ++ +F     R + C NS+++ L      ++A +    M + G+
Sbjct: 456 ASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRENGM 515

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
              E + ++ +   +  +S   G  R +H   +K G++ N+ V CSL+D Y++ G+++ +
Sbjct: 516 FPTESSYASMINLCARLSSIPQG--RQMHAQVLKDGYDQNVYVGCSLIDMYAKSGNMDDA 573

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
              F  +   N+V +  +++GY++NG G +A+++ E M+     PD VTF+ VL GC+HS
Sbjct: 574 RLFFNCMIVKNLVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSHS 633

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V E    FNSM+S YGI    +HY+C+ID L RA    + E ++ + P   D ++W  
Sbjct: 634 GLVDEAVTFFNSMESNYGITPLVEHYTCLIDALARAARFAEVEAVIGKMPYKDDPILWEV 693

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +C VH N  +G   A  L  L+P + + Y  +SN Y+ +G    +  +R    +R +
Sbjct: 694 LLAACVVHHNAELGEFSAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRGV 753

Query: 652 TRDIGHSLI 660
            +  G+S +
Sbjct: 754 VKGRGYSWV 762



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/546 (22%), Positives = 252/546 (46%), Gaps = 54/546 (9%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N+YS N  I    ++G L +A+ L   MP R+ V++N +I+   +   P +AL +Y 
Sbjct: 72  PHPNVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQ 131

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M+  G+  +  T +SVLS C       +G + H   + +G   + ++ + L+ +Y + G
Sbjct: 132 GMLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGHQFVENGLLGMYTKCG 191

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A+ LFD +P  N  ++  M+    +    D+ LR++ +M   G+  + ++   ++ 
Sbjct: 192 SVADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLG 251

Query: 220 GCS--------IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            C+        +   +   + +H+ V++ G+   +  V N+LVD Y+    + EA K F+
Sbjct: 252 ACAQACAGDYNVARAIQLAQSIHALVVRKGF-GSDQHVGNSLVDLYAKGMKMDEAIKVFE 310

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +    ++SWN +++ Y        A+E+   MQ                          
Sbjct: 311 SLSSVSIVSWNILITGYGQLGCYERAMEVLEFMQ-------------------------- 344

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
                    + GF+   V   + L     K   + S+ A+F+  P  S+   N+L++   
Sbjct: 345 ---------ESGFEPNEVTYSNMLASCI-KARDVPSARAMFDKIPKPSVTTWNTLLSGYG 394

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
                ++ +++F  M  + +  D  TL+  L + S   +  LG  + +H  +++    ++
Sbjct: 395 QEELHQETIDLFRRMQHQNVQPDRTTLAVILSSCSRLGNFELG--KQVHSASVRLLLHND 452

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + V+  L+D YS+CG + ++  +F  +   +VVC+ S+++G + + +  EA D L+ M +
Sbjct: 453 MFVASGLIDIYSKCGQVGIALIIFNMMTERDVVCWNSMISGLAIHSLSEEAFDFLKQMRE 512

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHY-SC-MIDMLGRAG 568
            G+ P + ++  ++  C     + +G Q+    +K  Y    D+  Y  C +IDM  ++G
Sbjct: 513 NGMFPTESSYASMINLCARLSSIPQGRQMHAQVLKDGY----DQNVYVGCSLIDMYAKSG 568

Query: 569 ILDKAE 574
            +D A 
Sbjct: 569 NMDDAR 574



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/506 (24%), Positives = 217/506 (42%), Gaps = 80/506 (15%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYM-------------------------------RMGPS 161
           H RVL+ G   + ++ + LV+LY                                R G  
Sbjct: 33  HARVLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPHPNVYSYNAAISAACRAGDL 92

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A DL   +P+RN  +WN ++ A      P E L MY  M  EG+ P   +   ++  C
Sbjct: 93  AAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGMLQEGLAPTNFTLASVLSAC 152

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                LD+G++ H   +K+G +D + FV N L+  Y+ CGS+ +A + FD +P  + +S+
Sbjct: 153 GAVAALDDGRRCHGLAVKVG-LDGHQFVENGLLGMYTKCGSVADAVRLFDGMPSPNEVSF 211

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR--TGN------VYFGK 333
            +++   A    + DAL LF RM     R    +    L   ++   G+      +   +
Sbjct: 212 TAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGACAQACAGDYNVARAIQLAQ 271

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            IH  V + GF     HV ++L D+Y K   ++ ++ VFES    S+   N L+T     
Sbjct: 272 SIHALVVRKGFGSDQ-HVGNSLVDLYAKGMKMDEAIKVFESLSSVSIVSWNILITGYGQL 330

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G  + A+E+  FM + G   +EVT                                SN+ 
Sbjct: 331 GCYERAMEVLEFMQESGFEPNEVTY-------------------------------SNML 359

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
            SC       +   +  +  +F+KIP P+V  + ++++GY +  + +E +D+   M  + 
Sbjct: 360 ASC------IKARDVPSARAMFDKIPKPSVTTWNTLLSGYGQEELHQETIDLFRRMQHQN 413

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           + PD+ T   +L+ C+  G  + G+ V ++   +  +  D    S +ID+  + G +  A
Sbjct: 414 VQPDRTTLAVILSSCSRLGNFELGKQVHSASVRLL-LHNDMFVASGLIDIYSKCGQVGIA 472

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVH 599
             +        D + W+S++    +H
Sbjct: 473 LIIFNMMT-ERDVVCWNSMISGLAIH 497



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 104/416 (25%), Positives = 193/416 (46%), Gaps = 34/416 (8%)

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N++  NA +      G L  A+     +P  + +SWN++++  A      +ALE++  M 
Sbjct: 75  NVYSYNAAISAACRAGDLAAARDLLGRMPDRNAVSWNTVIAAVARSGSPGEALEMYQGML 134

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                P+  +    L+       +  G++ HG   K+G D G   V++ L  MY KC  +
Sbjct: 135 QEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLD-GHQFVENGLLGMYTKCGSV 193

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +V +F+  P  +     ++M  L   G + DA+ +F  M   GI +D V +S+ L A 
Sbjct: 194 ADAVRLFDGMPSPNEVSFTAMMGGLAQGGAVDDALRLFARMSRTGIRVDPVAVSSVLGAC 253

Query: 426 SVSASANLGSCRLL------HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + + + +    R +      H   ++ GF S+  V  SL+D Y++   ++ + +VFE + 
Sbjct: 254 AQACAGDYNVARAIQLAQSIHALVVRKGFGSDQHVGNSLVDLYAKGMKMDEAIKVFESLS 313

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           S ++V +  ++ GY + G    A+++LE M + G  P++VT+  +LA C  +  V   + 
Sbjct: 314 SVSIVSWNILITGYGQLGCYERAMEVLEFMQESGFEPNEVTYSNMLASCIKARDVPSARA 373

Query: 540 VF-----------NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +F           N++ S YG +   Q     ID+  R          +Q      D   
Sbjct: 374 MFDKIPKPSVTTWNTLLSGYGQEELHQE---TIDLFRR----------MQHQNVQPDRTT 420

Query: 589 WSSLLRSCRVHGNEIIGRRV--ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
            + +L SC   GN  +G++V  A++ + L   D  V S + + YS+ G+  +++ I
Sbjct: 421 LAVILSSCSRLGNFELGKQVHSASVRLLLHN-DMFVASGLIDIYSKCGQVGIALII 475


>gi|15227389|ref|NP_179312.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|4584344|gb|AAD25139.1| putative selenium-binding protein [Arabidopsis thaliana]
 gi|330251504|gb|AEC06598.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 715

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 179/626 (28%), Positives = 335/626 (53%), Gaps = 23/626 (3%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++  N   D ++K G L S  + FD M +RD V++N+++ G   +   ++ L+ + ++  
Sbjct: 61  LFQGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRV 120

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G + + ST   V+  C +  F  +G +IH  V+  GF     + + ++ +Y     S+ 
Sbjct: 121 WGFEPNTSTLVLVIHACRSLWF--DGEKIHGYVIRSGFCGISSVQNSILCMYAD-SDSLS 177

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCS 222
           A  LFDE+ ER++ +W++++R++ +   P   L+++ +M  E   EP+ ++   +++ C+
Sbjct: 178 ARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACT 237

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +   +D G+ +H   I+ G+   ++FV N+L+D YS    +  A + FD     +++SWN
Sbjct: 238 VMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWN 297

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           SI++ +       +ALE+F  M          + V  L            K IHG + + 
Sbjct: 298 SILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRR 357

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G++   V + S+L D Y  C++++ +  V +S   + +  C+++++ L H+G   +A+ +
Sbjct: 358 GYESNEVAL-SSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISI 416

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN-IAVSCSLMDA 461
           F  M D     + +T+ + L A SVSA  +L + +  H  AI+     N I+V  S++DA
Sbjct: 417 FCHMRDTP---NAITVISLLNACSVSA--DLRTSKWAHGIAIRRSLAINDISVGTSIVDA 471

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG IE++ + F++I   N++ +T I++ Y+ NG+  +AL + + M Q+G  P+ VT+
Sbjct: 472 YAKCGAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTY 531

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR----QHYSCMIDMLGRAGILDKAEELL 577
           L  L+ CNH G+VK+G ++F SM     ++ D     QHYSC++DML RAG +D A EL+
Sbjct: 532 LAALSACNHGGLVKKGLMIFKSM-----VEEDHKPSLQHYSCIVDMLSRAGEIDTAVELI 586

Query: 578 QQTPGG--GDCMMWSSLLRSCRVHGNE-IIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           +  P         W ++L  CR    + II   V   ++ELEP+  + Y   S+ ++   
Sbjct: 587 KNLPEDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASSTFAAEK 646

Query: 635 EFEVSMQIRETALARKLTRDIGHSLI 660
            +E    +R     RK+    G+S++
Sbjct: 647 SWEDVAMMRRLVKERKVRVVAGYSMV 672


>gi|302790816|ref|XP_002977175.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
 gi|300155151|gb|EFJ21784.1| hypothetical protein SELMODRAFT_106630 [Selaginella moellendorffii]
          Length = 806

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 182/607 (29%), Positives = 320/607 (52%), Gaps = 17/607 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G ++ A   FD+        +N ++S      H ++A+ L+ +M  H  + S  + 
Sbjct: 195 YAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELFFQMEQH--QCSDRSC 252

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +  L  C+ AG    GIQIH ++ S   G  + + + L+ +Y+R G    AL +F ++P 
Sbjct: 253 AIALGACAAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPH 312

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IG--MLLDEG 230
           RN+ +W  M+ A  +       +++++ M AEG+ PN  ++  +V   + +G   +LD G
Sbjct: 313 RNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRG 372

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIY 288
           +++HS +   G +D +  V N+L++ Y+  G L EA++ FD I  +   V+S+ ++++ Y
Sbjct: 373 RKIHSQITASG-IDADPIVQNSLINMYARSGLLAEAREVFDSILENSKTVVSFTTMIAAY 431

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           A       ALE+F  M      P+  +F   L      G++  G  IH  + + G D   
Sbjct: 432 AHNGHPRQALEIFREMTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSD 491

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
               ++L DMY KC  +  +  VFE+   + L    +++ + + SGN + A++++  M+ 
Sbjct: 492 PFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQ 551

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRC 465
            GI  D  TLST L      A ANLG   +   +H  A++S  E +     +L   Y++C
Sbjct: 552 SGIHPDIATLSTLL-----VACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKC 606

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G +E + +++ +    +V  +TS++  +S+ G+   AL++   M   G+ P++VTF+ VL
Sbjct: 607 GSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVL 666

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             C+ +G+V EG+  F+S+ S YG     +H+ CM+D+LGRAG L  AEELL   P   D
Sbjct: 667 ISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPD 726

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE-FEVSMQIRE 644
            + W SLL SC++H +  IG R A  L+EL+P   + +  +S  Y+  G   ++    RE
Sbjct: 727 EIAWQSLLSSCKLHTDAEIGTRAAECLLELDPESTSQFVALSQIYAAAGRNSDIDEIKRE 786

Query: 645 TALARKL 651
            AL R++
Sbjct: 787 LALRRQI 793



 Score =  208 bits (530), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 152/549 (27%), Positives = 272/549 (49%), Gaps = 16/549 (2%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           ++++L  C N      G ++H  ++S     N  +G  +  +Y R      A+ LFD +P
Sbjct: 53  YANLLRQCGNQRALDHGRRVHAHIVSRRLARNALLGELVFQMYARCRCFDTAIALFDAMP 112

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +R    WN++++ F    RP + L +Y +M  E  +P+   F + +  C     L +G+ 
Sbjct: 113 DRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVACGRIKDLAQGRS 172

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  V       +N  + +ALV  Y+ CG +  A  +FD         WN+I+S  A   
Sbjct: 173 IHYRVAT--GRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPWNAIMSALAGAG 230

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS-VHV 351
               A+ELFF+M+  + + S RS    L   +  G++  G QIH  +      HG+ V V
Sbjct: 231 HHRRAIELFFQME--QHQCSDRSCAIALGACAAAGHLRGGIQIHDKIQS--EIHGTRVLV 286

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +AL  MY +C  ++ ++ VF   P R++    S++ ++  SG+   AV++F  M+ EGI
Sbjct: 287 LNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGI 346

Query: 412 GLDEVTLSTTLKALS-VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
             +E T ++ + A++ +   A L   R +H     SG +++  V  SL++ Y+R G +  
Sbjct: 347 NPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAE 406

Query: 471 SHQVFEKI--PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           + +VF+ I   S  VV FT+++  Y+ NG  R+AL++   M  RG+ P+++TF  VLA C
Sbjct: 407 AREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAAC 466

Query: 529 NHSGMVKEGQLVFNSMKSVYGID-ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
              G +  G  +   M    G+D +D   Y+ ++DM  + G L  A  +  +T    D +
Sbjct: 467 VAIGDLASGAWIHERMIES-GLDSSDPFAYNSLVDMYAKCGDLGFAARVF-ETMKTKDLV 524

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILME--LEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
            W++++ +    GN      + + +++  + P D A  S +    + +G+  +  +I   
Sbjct: 525 AWTTIIAANVQSGNNRAALDLYDRMLQSGIHP-DIATLSTLLVACANLGDLAMGEKIHRQ 583

Query: 646 ALARKLTRD 654
           AL  KL +D
Sbjct: 584 ALRSKLEQD 592



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 148/541 (27%), Positives = 263/541 (48%), Gaps = 17/541 (3%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
            ++A  LFD MP R    +N+L+        P+  L LY  M     + SA  F   +  
Sbjct: 101 FDTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVENTQPSACGFMWAIVA 160

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C       +G  IH RV + G G+N  I S LV +Y + G    A+  FD+  E   A W
Sbjct: 161 CGRIKDLAQGRSIHYRV-ATGRGINSSIQSALVTMYAQCGRIDLAMAAFDDNRELGTAPW 219

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++ A          + ++ +M  E  + +  S    +  C+    L  G Q+H   I+
Sbjct: 220 NAIMSALAGAGHHRRAIELFFQM--EQHQCSDRSCAIALGACAAAGHLRGGIQIHDK-IQ 276

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                  + V NAL+  Y  CG L EA + F  +P  +V+SW S+++  A       A++
Sbjct: 277 SEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVK 336

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGN---VYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           LF  M      P+ +++   ++  +  G    +  G++IH  +T  G D   + VQ++L 
Sbjct: 337 LFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPI-VQNSLI 395

Query: 357 DMYGKCNVIESSVAVFES--APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           +MY +  ++  +  VF+S     +++    +++ +  H+G+ + A+E+F  M   G+  +
Sbjct: 396 NMYARSGLLAEAREVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPN 455

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC-SLMDAYSRCGHIELSHQ 473
           E+T +T L A    A  +L S   +H   I+SG +S+   +  SL+D Y++CG +  + +
Sbjct: 456 EITFATVLAA--CVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAAR 513

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VFE + + ++V +T+I+    ++G  R ALD+ + M+Q G+ PD  T   +L  C + G 
Sbjct: 514 VFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGD 573

Query: 534 VKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  G+ +   +++S    DA  Q  + +  M  + G L+KA  L ++   G D   W+S+
Sbjct: 574 LAMGEKIHRQALRSKLEQDAHFQ--NALAAMYAKCGSLEKATRLYRRCR-GSDVATWTSM 630

Query: 593 L 593
           L
Sbjct: 631 L 631



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/451 (24%), Positives = 220/451 (48%), Gaps = 10/451 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  +V+ G L+ A ++F +MP R++V++  +I+   +  H   A+ L+D M++ GI 
Sbjct: 288 NALISMYVRCGKLDEALRVFADMPHRNVVSWTSMIAAVAQSGHYSFAVKLFDGMIAEGIN 347

Query: 108 ESASTFSSVLSVCSNAG---FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            +  T++SV+S  ++ G       G +IH ++ + G   +  + + L+++Y R G    A
Sbjct: 348 PNEKTYASVVSAIAHLGRDAILDRGRKIHSQITASGIDADPIVQNSLINMYARSGLLAEA 407

Query: 165 LDLFDELPE--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            ++FD + E  + + ++  M+ A+     P + L ++ +M A GV PN ++F  ++  C 
Sbjct: 408 REVFDSILENSKTVVSFTTMIAAYAHNGHPRQALEIFREMTARGVAPNEITFATVLAACV 467

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G  +H  +I+ G    + F  N+LVD Y+ CG L  A + F+ +   D+++W 
Sbjct: 468 AIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCGDLGFAARVFETMKTKDLVAWT 527

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++          AL+L+ RM      P I +    L   +  G++  G++IH    + 
Sbjct: 528 TIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLVACANLGDLAMGEKIHRQALRS 587

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             +  + H Q+AL  MY KC  +E +  ++    G  +    S++ +    G    A+E+
Sbjct: 588 KLEQDA-HFQNALAAMYAKCGSLEKATRLYRRCRGSDVATWTSMLAAHSQQGLASVALEL 646

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR-LLHCCAIKSGFESNIAVSCSLMDA 461
           +  M  EG+  +EVT    L  +S S +  +   R   H      G + +      ++D 
Sbjct: 647 YAEMESEGVRPNEVTFIPVL--ISCSQAGLVAEGREFFHSITSDYGSQPSAEHFGCMVDV 704

Query: 462 YSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
             R G +  + ++ + +P  P+ + + S+++
Sbjct: 705 LGRAGKLRDAEELLDSMPFYPDEIAWQSLLS 735



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 100/393 (25%), Positives = 192/393 (48%), Gaps = 14/393 (3%)

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
           +SR D+ L   +K++        L +  ++R C     LD G+++H+H++    +  N  
Sbjct: 29  ISRLDDALLRLDKLRHRSTS-QLLLYANLLRQCGNQRALDHGRRVHAHIVSRR-LARNAL 86

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           +   +   Y+ C     A   FD +P      WN ++  +   D   D LEL+ RM +  
Sbjct: 87  LGELVFQMYARCRCFDTAIALFDAMPDRRPFCWNVLMKEFLAADRPRDTLELYRRMSVEN 146

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDMYGKCNVIES 367
            +PS   F+  +    R  ++  G+ IH  V T  G +     +QSAL  MY +C  I+ 
Sbjct: 147 TQPSACGFMWAIVACGRIKDLAQGRSIHYRVATGRGINSS---IQSALVTMYAQCGRIDL 203

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           ++A F+          N++M++L  +G+ + A+E+F F +++    D    S  +   + 
Sbjct: 204 AMAAFDDNRELGTAPWNAIMSALAGAGHHRRAIELF-FQMEQHQCSDR---SCAIALGAC 259

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           +A+ +L     +H         + + V  +L+  Y RCG ++ + +VF  +P  NVV +T
Sbjct: 260 AAAGHLRGGIQIHDKIQSEIHGTRVLVLNALISMYVRCGKLDEALRVFADMPHRNVVSWT 319

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG---MVKEGQLVFNSM 544
           S++   +++G    A+ + + MI  G+ P++ T+  V++   H G   ++  G+ + +S 
Sbjct: 320 SMIAAVAQSGHYSFAVKLFDGMIAEGINPNEKTYASVVSAIAHLGRDAILDRGRKI-HSQ 378

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            +  GIDAD    + +I+M  R+G+L +A E+ 
Sbjct: 379 ITASGIDADPIVQNSLINMYARSGLLAEAREVF 411



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 74/289 (25%), Positives = 135/289 (46%), Gaps = 3/289 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPN--PQLNIYSSNRTIDDFVKSG 58
           M +  + P   T  T+   C +I  L+S   +      +     + ++ N  +D + K G
Sbjct: 447 MTARGVAPNEITFATVLAACVAIGDLASGAWIHERMIESGLDSSDPFAYNSLVDMYAKCG 506

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            L  A ++F+ M  +D+V +  +I+   +  + + AL LYD M+  GI    +T S++L 
Sbjct: 507 DLGFAARVFETMKTKDLVAWTTIIAANVQSGNNRAALDLYDRMLQSGIHPDIATLSTLLV 566

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C+N G    G +IH + L      + +  + L  +Y + G   +A  L+      ++AT
Sbjct: 567 ACANLGDLAMGEKIHRQALRSKLEQDAHFQNALAAMYAKCGSLEKATRLYRRCRGSDVAT 626

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  ML A  +       L +Y +M++EGV PN ++F  ++  CS   L+ EG++    + 
Sbjct: 627 WTSMLAAHSQQGLASVALELYAEMESEGVRPNEVTFIPVLISCSQAGLVAEGREFFHSIT 686

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVS 286
                  +      +VD     G L +A++  D +P   D I+W S++S
Sbjct: 687 SDYGSQPSAEHFGCMVDVLGRAGKLRDAEELLDSMPFYPDEIAWQSLLS 735


>gi|359485832|ref|XP_002268817.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1736

 Score =  284 bits (727), Expect = 9e-74,   Method: Compositional matrix adjust.
 Identities = 182/628 (28%), Positives = 330/628 (52%), Gaps = 16/628 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y S+  +  F + G  + AK +F++M  R++V+ N L+ G  K +  + A  ++ EM 
Sbjct: 316 DLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM- 374

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFGLN-LYIGSPLVDLYMR 157
              +  ++ ++  +LS  S      EG     ++H  V+  G   N + IG+ LV++Y +
Sbjct: 375 KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK 434

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +F+ + E++  +WN ++    +    ++    +++M+  G  P+  +    
Sbjct: 435 SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRTGSMPSNFTLIST 494

Query: 218 VRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +  C S+G ++  G+Q+H   +KLG +D ++ V+NAL+  Y+  G   E  K F  +P  
Sbjct: 495 LSSCASLGWIM-LGEQIHCDGLKLG-LDTDVSVSNALLALYAETGCFTECLKVFSLMPEY 552

Query: 277 DVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           D +SWNS++   +D +  +  A++ F +M       S  +F+  L+  S         QI
Sbjct: 553 DQVSWNSVIGALSDSEASVSQAVKYFLQMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI 612

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSG 394
           H  V K      +  + +AL   YGKC  +     +F   +  R     NS+++  +H+ 
Sbjct: 613 HALVLKYCLSDDTA-IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNE 671

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
            +  A+++  FM+ +G  LD  T +T L A +  A+   G    +H C I++  ES++ V
Sbjct: 672 LLHKAMDLVWFMMQKGQRLDSFTFATILSACASVATLERG--MEVHACGIRACLESDVVV 729

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+D YS+CG I+ + + FE +P  NV  + S+++GY+R+G G +AL +   M+  G 
Sbjct: 730 GSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQ 789

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD VTF+ VL+ C+H G V+EG   F SM  VY +    +H+SCM+D+LGRAG LD+  
Sbjct: 790 PPDHVTFVGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEVG 849

Query: 575 ELLQQTPGGGDCMMWSSLLRS-CRVHG-NEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           + +   P   + ++W ++L + CR +G N  +GRR A +L+ELEP +   Y  ++N Y+ 
Sbjct: 850 DFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYAS 909

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLI 660
             ++E   + R       + ++ G S +
Sbjct: 910 GEKWEDVAKARTAMKEAAVKKEAGCSWV 937



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 156/645 (24%), Positives = 308/645 (47%), Gaps = 34/645 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++ SN  I+ +V+ G L SA+KLFDEM  R++VT+  LISG  +   P +A   + +MV
Sbjct: 105 NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 164

Query: 103 SHGIKESASTFSSVLSVCSNAGFY--TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR-MG 159
             G   +   F S L  C  +G      G+QIH  +    +G ++ + + L+ +Y   + 
Sbjct: 165 RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 224

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV----EPNGLSFC 215
            +  A  +FD +  RN  +WN ++  +           +++ M+ EG+    +PN  +F 
Sbjct: 225 SANDARSVFDGIGIRNSISWNSIISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFG 284

Query: 216 YMV-RGCS---IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            ++   CS    G+ + E  Q+ + V K G++  +++V++ALV  ++  G   +AK  F+
Sbjct: 285 SLITTACSSVDFGLCVLE--QMLARVEKSGFLQ-DLYVSSALVSGFARFGLTDDAKNIFE 341

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV---EFLNFASRTGN 328
            + V +V+S N ++           A ++F  M+      S    V    F  F+     
Sbjct: 342 QMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEG 401

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
              G+++H +V + G +   V + + L +MY K   I  + +VFE    +     NSL++
Sbjct: 402 RRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLIS 461

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIK 445
            L  +   +DA E F  M   G      TL +TL     S+ A+LG   L   +HC  +K
Sbjct: 462 GLDQNECSEDAAESFHRMRRTGSMPSNFTLISTL-----SSCASLGWIMLGEQIHCDGLK 516

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG-REALD 504
            G +++++VS +L+  Y+  G      +VF  +P  + V + S++   S +     +A+ 
Sbjct: 517 LGLDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVK 576

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
               M++ G    +VTF+ +L+  + S  + E     +++   Y +  D    + ++   
Sbjct: 577 YFLQMMRGGWGLSRVTFINILSAVS-SLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCY 635

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR---VANILMELEPVDFA 621
           G+ G +++ E++  +     D + W+S++ S  +H NE++ +    V  ++ + + +D  
Sbjct: 636 GKCGEMNECEKIFARMSETRDEVSWNSMI-SGYIH-NELLHKAMDLVWFMMQKGQRLDSF 693

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEVNS 664
            ++ + +  + +   E  M++    +   L  D  +G +L+++ S
Sbjct: 694 TFATILSACASVATLERGMEVHACGIRACLESDVVVGSALVDMYS 738



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 236/502 (47%), Gaps = 27/502 (5%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           S+ TF S+++    +    E  ++H + +  GF  NL++ + L+++Y+R+G    A  LF
Sbjct: 70  SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLF 129

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS----IG 224
           DE+  RNL TW  ++  + +  +PDE    +  M   G  PN  +F   +R C      G
Sbjct: 130 DEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSG 189

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNS 283
             L  G Q+H  + K  +   ++ V N L+  Y +C  S  +A+  FD I + + ISWNS
Sbjct: 190 CKL--GVQIHGLISKTRY-GSDVVVCNVLISMYGSCLDSANDARSVFDGIGIRNSISWNS 246

Query: 284 IVSIYADYDLIFDALELFFRMQL----CRKRPSIRSFVEFLNFASRTGNVYFG----KQI 335
           I+S+Y+       A +LF  MQ        +P+  +F   +  A    +V FG    +Q+
Sbjct: 247 IISVYSRRGDAVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITTA--CSSVDFGLCVLEQM 304

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
              V K GF    ++V SAL   + +  + + +  +FE    R++   N LM  L+    
Sbjct: 305 LARVEKSGFLQ-DLYVSSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQ 363

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG--SCRLLHCCAIKSGFESN-I 452
            + A ++F  M D  +G++  +    L A S  +    G    R +H   I++G   N +
Sbjct: 364 GEAAAKVFHEMKDL-VGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKV 422

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           A+   L++ Y++ G I  +  VFE +   + V + S+++G  +N    +A +    M + 
Sbjct: 423 AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFHRMRRT 482

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
           G +P   T +  L+ C   G +  G+ +  + +K   G+D D    + ++ +    G   
Sbjct: 483 GSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK--LGLDTDVSVSNALLALYAETGCFT 540

Query: 572 KAEELLQQTPGGGDCMMWSSLL 593
           +  ++    P   D + W+S++
Sbjct: 541 ECLKVFSLMP-EYDQVSWNSVI 561


>gi|147836314|emb|CAN59994.1| hypothetical protein VITISV_012660 [Vitis vinifera]
          Length = 768

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 195/665 (29%), Positives = 323/665 (48%), Gaps = 66/665 (9%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           I S+N  I ++ K   L+ A++LFD+MP R +V++N +IS   K     +AL+L   M  
Sbjct: 72  IISTNIAISNYAKQSKLDVARQLFDQMPQRTVVSWNTMISSYSKHGRFSEALFLVYSMHR 131

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
             +K S STFSSVLSVC+      +G  IHC VL  G      +GS L+  Y        
Sbjct: 132 SHMKLSESTFSSVLSVCARLRCLRDGKLIHCLVLKSGSESFELVGSALLYFYASCFEIGE 191

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV---------------- 207
           A  +FD L  RN   W+LML  +   +  D+ L ++ KM    V                
Sbjct: 192 ARRVFDVLVRRNEVLWSLMLVGYVTCNVMDDALSVFVKMPRRDVVAWTTLISGFSKNGDG 251

Query: 208 -----------------EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
                             PN  +F  +VR C    +L  G+ +H  ++K G ++ +  + 
Sbjct: 252 CGKALEMFRLMMRSGETTPNEFTFDCVVRACGRLGILSVGRTVHGLLMKCG-LEYDPSIG 310

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALV+FY  C ++ +A +    +    + + NS++        I DA EL F        
Sbjct: 311 GALVEFYCECEAIDDALRVCKGVVNPCLNALNSLIEGLISMGRIEDA-ELVF-------- 361

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG----------SVHVQSALTDMYG 360
                     N  +    V +   I GY      D            ++   + +  +Y 
Sbjct: 362 ----------NGMTEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYS 411

Query: 361 KCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           +   I+ ++ +FE     +     NS+++  +HSG  ++A++++  M    I     T S
Sbjct: 412 RNGEIDKALELFEETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFS 471

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
               A S   S   G  +LLH   IK+ FESN+ V  SL+D YS+CG I  +   F  I 
Sbjct: 472 ALFHACSCLGSLQQG--QLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIF 529

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
           SPNV  +T+++NG++ +G+G EA+ + + MI++GL P+  TF+ VL+ C+ +G+V EG  
Sbjct: 530 SPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMK 589

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +F+SM+  Y +    +HY+C++D+LGR+G + +AEE +++ P   D ++W +LL +C   
Sbjct: 590 IFHSMERCYSVTPTLEHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSACWFW 649

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            +  +G RVA  +   +P   + Y  +SN Y+ +G +   M +R+     K+ +D G S 
Sbjct: 650 MDLEVGERVAEKMFSFDPKPISSYVILSNIYAGLGRWREKMMVRKILRGFKVKKDPGCSW 709

Query: 660 IEVNS 664
           IE+N+
Sbjct: 710 IELNN 714



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 74/280 (26%), Positives = 140/280 (50%), Gaps = 14/280 (5%)

Query: 21  TSIVPLSSSLLLDSYC------------QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFD 68
           T + P+S +L++  Y             +  P   I+SSN  I  + ++G ++ A +LF+
Sbjct: 365 TEMNPVSYNLMIKGYAVGGQMDDSKRLFEKMPCRTIFSSNTMISVYSRNGEIDKALELFE 424

Query: 69  EMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
           E    +D VT+N +ISG      P++AL LY  M    I+++ STFS++   CS  G   
Sbjct: 425 ETKNEKDPVTWNSMISGYIHSGQPEEALKLYITMHRLSIQQTRSTFSALFHACSCLGSLQ 484

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
           +G  +H  ++   F  N+Y+G+ L+D+Y + G  + A   F  +   N+A W  ++    
Sbjct: 485 QGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSIFSPNVAAWTALINGHA 544

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 E + +++ M  +G+ PNG +F  ++  CS   L++EG ++   + +   V   +
Sbjct: 545 YHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGMKIFHSMERCYSVTPTL 604

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
                +VD     G + EA++    +P++ D + W +++S
Sbjct: 605 EHYACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLS 644



 Score = 64.7 bits (156), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 51/179 (28%), Positives = 84/179 (46%), Gaps = 7/179 (3%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T + L   C+ +  L    LL ++    P + N+Y     ID + K G +  A+  F  +
Sbjct: 469 TFSALFHACSCLGSLQQGQLLHAHLIKTPFESNVYVGTSLIDMYSKCGSIMEAQTSFVSI 528

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
            + ++  +  LI+G        +A+ L+D M+  G+  + +TF  VLS CS AG   EG+
Sbjct: 529 FSPNVAAWTALINGHAYHGLGSEAISLFDXMIEQGLAPNGATFVGVLSACSRAGLVNEGM 588

Query: 131 QI-HC--RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           +I H   R  S+   L  Y  + +VDL  R G    A +   ++P E +   W  +L A
Sbjct: 589 KIFHSMERCYSVTPTLEHY--ACVVDLLGRSGHIREAEEFIKKMPLEADGVVWGALLSA 645


>gi|62320406|dbj|BAD94843.1| putative protein [Arabidopsis thaliana]
          Length = 720

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 176/600 (29%), Positives = 322/600 (53%), Gaps = 9/600 (1%)

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FDE+     + +N+L++   K      ++ L+ +M+S G++  + TFS V    S+    
Sbjct: 1   FDEVKIEKALFWNILMNELAKSGDFSGSIGLFKKMMSSGVEMDSYTFSCVSKSFSSLRSV 60

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G Q+H  +L  GFG    +G+ LV  Y++      A  +FDE+ ER++ +WN ++  +
Sbjct: 61  HGGEQLHGFILKSGFGERNSVGNSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGY 120

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                 ++ L ++ +M   G+E +  +   +  GC+   L+  G+ +HS  +K  +   +
Sbjct: 121 VSNGLAEKGLSVFVQMLVSGIEIDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSRED 180

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
            F  N L+D YS CG L  AK  F  +    V+S+ S+++ YA   L  +A++LF  M+ 
Sbjct: 181 RF-CNTLLDMYSKCGDLDSAKAVFREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEE 239

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNV 364
               P + +    LN  +R   +  GK++H ++ +  LGFD   + V +AL DMY KC  
Sbjct: 240 EGISPDVYTVTAVLNCCARYRLLDEGKRVHEWIKENDLGFD---IFVSNALMDMYAKCGS 296

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLK 423
           ++ +  VF     + +   N+++     +    +A+ +F  +++E     DE T++  L 
Sbjct: 297 MQEAELVFSEMRVKDIISWNTIIGGYSKNCYANEALSLFNLLLEEKRFSPDERTVACVLP 356

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A +  ++ + G  R +H   +++G+ S+  V+ SL+D Y++CG + L+H +F+ I S ++
Sbjct: 357 ACASLSAFDKG--REIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLAHMLFDDIASKDL 414

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           V +T ++ GY  +G G+EA+ +   M Q G+  D+++F+ +L  C+HSG+V EG   FN 
Sbjct: 415 VSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHSGLVDEGWRFFNI 474

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M+    I+   +HY+C++DML R G L KA   ++  P   D  +W +LL  CR+H +  
Sbjct: 475 MRHECKIEPTVEHYACIVDMLARTGDLIKAYRFIENMPIPPDATIWGALLCGCRIHHDVK 534

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +  +VA  + ELEP +   Y  ++N Y+E  ++E   ++R+    R L ++ G S IE+ 
Sbjct: 535 LAEKVAEKVFELEPENTGYYVLMANIYAEAEKWEQVKRLRKRIGQRGLRKNPGCSWIEIK 594



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/435 (26%), Positives = 222/435 (51%), Gaps = 4/435 (0%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  ++K+  ++SA+K+FDEM  RD++++N +I+G       ++ L ++ +M+  GI+
Sbjct: 83  NSLVAFYLKNQRVDSARKVFDEMTERDVISWNSIINGYVSNGLAEKGLSVFVQMLVSGIE 142

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
              +T  SV + C+++   + G  +H   +   F       + L+D+Y + G    A  +
Sbjct: 143 IDLATIVSVFAGCADSRLISLGRAVHSIGVKACFSREDRFCNTLLDMYSKCGDLDSAKAV 202

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F E+ +R++ ++  M+  +       E ++++ +M+ EG+ P+  +   ++  C+   LL
Sbjct: 203 FREMSDRSVVSYTSMIAGYAREGLAGEAVKLFEEMEEEGISPDVYTVTAVLNCCARYRLL 262

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           DEGK++H   IK   +  +IFV+NAL+D Y+ CGS+ EA+  F  + V D+ISWN+I+  
Sbjct: 263 DEGKRVHEW-IKENDLGFDIFVSNALMDMYAKCGSMQEAELVFSEMRVKDIISWNTIIGG 321

Query: 288 YADYDLIFDALELF-FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           Y+      +AL LF   ++  R  P  R+    L   +       G++IHGY+ + G+  
Sbjct: 322 YSKNCYANEALSLFNLLLEEKRFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGY-F 380

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
              HV ++L DMY KC  +  +  +F+    + L     ++      G  K+A+ +F  M
Sbjct: 381 SDRHVANSLVDMYAKCGALLLAHMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQM 440

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
              GI  DE++  + L A S S   + G  R  +    +   E  +     ++D  +R G
Sbjct: 441 RQAGIEADEISFVSLLYACSHSGLVDEG-WRFFNIMRHECKIEPTVEHYACIVDMLARTG 499

Query: 467 HIELSHQVFEKIPSP 481
            +  +++  E +P P
Sbjct: 500 DLIKAYRFIENMPIP 514



 Score = 73.2 bits (178), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 48/187 (25%), Positives = 90/187 (48%), Gaps = 13/187 (6%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSA 63
           +  P  RT+  + P C S+        +  Y   N    + + +N  +D + K G L  A
Sbjct: 343 RFSPDERTVACVLPACASLSAFDKGREIHGYIMRNGYFSDRHVANSLVDMYAKCGALLLA 402

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
             LFD++ ++D+V++ ++I+G G     K+A+ L+++M   GI+    +F S+L  CS++
Sbjct: 403 HMLFDDIASKDLVSWTVMIAGYGMHGFGKEAIALFNQMRQAGIEADEISFVSLLYACSHS 462

Query: 124 GFYTEGIQI------HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           G   EG +        C++      +  Y  + +VD+  R G  ++A    + +P    A
Sbjct: 463 GLVDEGWRFFNIMRHECKIEPT---VEHY--ACIVDMLARTGDLIKAYRFIENMPIPPDA 517

Query: 178 T-WNLML 183
           T W  +L
Sbjct: 518 TIWGALL 524


>gi|302783925|ref|XP_002973735.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
 gi|300158773|gb|EFJ25395.1| hypothetical protein SELMODRAFT_99756 [Selaginella moellendorffii]
          Length = 836

 Score =  284 bits (727), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 177/602 (29%), Positives = 307/602 (50%), Gaps = 15/602 (2%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           +IT  + T T    +   LL   Y    P       N  ++ + K G L  A+K+F+ + 
Sbjct: 227 SITRGSSTLTGCRAMEQRLLASGYMSHVP-----VQNALVNVYAKCGDLEGARKVFNRLE 281

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESASTFSSVLSVCSNAGFYTEGI 130
            +D+++++ +IS   +     +A+ +Y  M S   ++ +A TF  V+  C+  G    GI
Sbjct: 282 RKDVISWSTMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGI 341

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H R++SLG   ++ +GS LV +Y++ G    A   FD + +R++  WN ML A+ E  
Sbjct: 342 QVHGRLVSLGLETDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERG 401

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            P +V+  Y  M    VEPN +++  ++  CS    L +G+++HS ++  G ++ ++ + 
Sbjct: 402 SPQQVIEAYEAMD---VEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSG-LETDMTME 457

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            AL+  Y  C SL  A + F+ +   DVI WN ++  Y D+D   +AL L+ RM      
Sbjct: 458 TALLSLYIKCRSLKSACQVFEAMGKKDVIPWNFMMVGYIDHDCDTEALRLYARMHEAGVE 517

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
            +  +F   L   S+  ++  G ++   +T  GF+   V   +AL +MY  C  +E++  
Sbjct: 518 ANNVTFANALKACSKIKDIETGSKVEAMITTKGFETDVV-TDTALLNMYAACGDLEAAKR 576

Query: 371 VFESAPG--RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           VF S  G  R +    +++ S   +G  ++A+ ++  M+ E I  + VT ++ L A   S
Sbjct: 577 VFGSRRGERRDVVFWTAMIASYAQAGRGEEALALYKTMLSEEIKPNSVTYTSVLSA--CS 634

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           +  N+   R +H        E ++AV  SL+  Y+RCG +  +   F KI + +V  +T 
Sbjct: 635 SLGNILEGRKIHSKLEGKAEELDVAVQNSLLSMYARCGSLRDAWSCFAKIHNRDVFSWTG 694

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++  ++ +G    AL+++  M   G+ PD VTF  VL  C+H G ++ G   F SM   Y
Sbjct: 695 MVAAFAHHGHSARALELVREMELCGVSPDAVTFQSVLHACSHEGSLERGWASFVSMAVDY 754

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            ++  + HY CM+D+L RAG L +A E++Q      + M W  LL + R H N  +G   
Sbjct: 755 AVEPSKDHYLCMVDLLARAGRLAEAREVIQFVGLERESMGWMMLLGASRTHSNLAMGVEA 814

Query: 609 AN 610
           A 
Sbjct: 815 AQ 816



 Score =  213 bits (543), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 142/555 (25%), Positives = 278/555 (50%), Gaps = 16/555 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  N  I    K G+   ++++FD M  +++ +++++I    +  H  +A  L++ M 
Sbjct: 57  NVYFRNWLIQLHGKFGNTQKSREVFDGMQQKNVYSWSMMIGAYAQNGHRNEAFLLFERME 116

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           S GI+ +A T   VL  CS       G ++H  + +  F  ++ + + LV++Y + G   
Sbjct: 117 SEGIRPNAVTCLHVLGACSYQNELPFGKKVHAYISASEFKWDISLQTSLVNMYAKCGSPA 176

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD +  +++ TWN M  A     +  ++LR   +M  +GV+PN  ++  + RG S
Sbjct: 177 DAKAVFDSMARKDIVTWNAMAGASVHNGQSHKLLR---EMDLQGVKPNATTYASITRGSS 233

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L   + +   ++  G++  ++ V NALV+ Y+ CG L  A+K F+ +   DVISW+
Sbjct: 234 T---LTGCRAMEQRLLASGYMS-HVPVQNALVNVYAKCGDLEGARKVFNRLERKDVISWS 289

Query: 283 SIVSIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +++S Y       +A+E++  M+      P+  +FV  +   +  G+V  G Q+HG +  
Sbjct: 290 TMISAYNQSGRHSEAIEIYRLMESETSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVS 349

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LG +   V V SAL  MY KC  +E +   F+    R + C N ++++    G+ +  +E
Sbjct: 350 LGLE-TDVAVGSALVQMYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIE 408

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +     E + ++   ++ T   ++ SA  +L   + +H   + SG E+++ +  +L+  
Sbjct: 409 AY-----EAMDVEPNAVTYTNVLIACSAMEDLAQGQKVHSRIVSSGLETDMTMETALLSL 463

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +C  ++ + QVFE +   +V+ +  +M GY  +    EAL +   M + G+  + VTF
Sbjct: 464 YIKCRSLKSACQVFEAMGKKDVIPWNFMMVGYIDHDCDTEALRLYARMHEAGVEANNVTF 523

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
              L  C+    ++ G  V  +M +  G + D    + +++M    G L+ A+ +     
Sbjct: 524 ANALKACSKIKDIETGSKV-EAMITTKGFETDVVTDTALLNMYAACGDLEAAKRVFGSRR 582

Query: 582 GG-GDCMMWSSLLRS 595
           G   D + W++++ S
Sbjct: 583 GERRDVVFWTAMIAS 597



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/493 (22%), Positives = 248/493 (50%), Gaps = 45/493 (9%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           ++L  C ++G   E   ++ R    G+  N+Y  + L+ L+ + G + ++ ++FD + ++
Sbjct: 31  TLLQQCQDSG---ELDVLYARFTGTGYLDNVYFRNWLIQLHGKFGNTQKSREVFDGMQQK 87

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N+ +W++M+ A+ +    +E   ++ +M++EG+ PN ++  +++  CS    L  GK++H
Sbjct: 88  NVYSWSMMIGAYAQNGHRNEAFLLFERMESEGIRPNAVTCLHVLGACSYQNELPFGKKVH 147

Query: 235 SHV--IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +++   +  W   +I +  +LV+ Y+ CGS  +AK  FD +   D+++WN++        
Sbjct: 148 AYISASEFKW---DISLQTSLVNMYAKCGSPADAKAVFDSMARKDIVTWNAMAGASVHNG 204

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASR-TGNVYFGKQI--HGYVTKLGFDHGSV 349
               + +L   M L   +P+  ++      +S  TG     +++   GY++        V
Sbjct: 205 ---QSHKLLREMDLQGVKPNATTYASITRGSSTLTGCRAMEQRLLASGYMSH-------V 254

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            VQ+AL ++Y KC  +E +  VF     + +   ++++++   SG   +A+E++  M  E
Sbjct: 255 PVQNALVNVYAKCGDLEGARKVFNRLERKDVISWSTMISAYNQSGRHSEAIEIYRLMESE 314

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCR---------LLHCCAIKSGFESNIAVSCSLMD 460
                     T+++  +V+    +G+C           +H   +  G E+++AV  +L+ 
Sbjct: 315 ----------TSVEPNAVTFVGVIGACTGCGDVIRGIQVHGRLVSLGLETDVAVGSALVQ 364

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +CG +E + + F+++   +V+C+  +++ YS  G  ++ ++  E M    + P+ VT
Sbjct: 365 MYVKCGSLEDAKKAFDRVEKRDVLCWNFMLSAYSERGSPQQVIEAYEAM---DVEPNAVT 421

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           +  VL  C+    + +GQ V + + S  G++ D    + ++ +  +   L  A ++ +  
Sbjct: 422 YTNVLIACSAMEDLAQGQKVHSRIVSS-GLETDMTMETALLSLYIKCRSLKSACQVFEAM 480

Query: 581 PGGGDCMMWSSLL 593
            G  D + W+ ++
Sbjct: 481 -GKKDVIPWNFMM 492


>gi|347954520|gb|AEP33760.1| organelle transcript processing 82, partial [Capsella
           bursa-pastoris]
          Length = 706

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 168/570 (29%), Positives = 299/570 (52%), Gaps = 42/570 (7%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPS----VRALDLFDELPERNLATWNLMLRAFC 187
           IH +++  G     Y  S L++  + + P       A+ +FD + E NL  WN M R   
Sbjct: 21  IHAKMIKTGLHNTNYALSKLIEFSV-LSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHA 79

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             S P   L +Y  M + G+ PN  +F ++++ C+      EG+Q+H HV+KLG  D+++
Sbjct: 80  LSSDPVSALYLYVCMISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLG-CDLDL 138

Query: 248 FVAN-------------------------------ALVDFYSACGSLIEAKKSFDFIPVD 276
           +V                                 AL+  Y++ G +  A+K FD IPV 
Sbjct: 139 YVHTSLIAMYVKNGRXEDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVK 198

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWN+++S YA+     +ALELF  M     +P   + V  L+  +++ ++  G+Q+H
Sbjct: 199 DVVSWNALISGYAETGNYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVH 258

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            ++   GF   ++ + +AL D+Y KC  +E++  +FE    + +   N+L+    H    
Sbjct: 259 SWIDDHGFG-SNLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLY 317

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNIAV 454
           K+A+ +F  M+  G   +EVT+ + L A +   + ++G  R +H    K   G  +  ++
Sbjct: 318 KEALLLFQEMLRSGESPNEVTMLSILPACAHLGAIDIG--RWIHVYIDKRLKGVSNPSSL 375

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++CG IE + QVF+ + + ++  + +++ G++ +G    A D+   M + G+
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGI 435

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD +TF+ +L+ C+HSGM+  G+ +F SM   Y I    +HY CMID+LG +G+  +AE
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRHIFRSMTEDYKITPKLEHYGCMIDLLGHSGLFKEAE 495

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E++       D ++W SLL++C++HGN  +G   A  L+++EP +   Y  +SN Y+  G
Sbjct: 496 EMINSMEMDPDGVIWCSLLKACKMHGNVELGESFAQNLIKIEPKNSGSYVLLSNIYATAG 555

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +    + R     + + +  G S IE++S
Sbjct: 556 RWNEVAKRRALLNDKGMKKVPGCSSIEIDS 585



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 139/534 (26%), Positives = 239/534 (44%), Gaps = 81/534 (15%)

Query: 45  YSSNRTIDDFVKSGH---LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ I+  V S H   L  A  +FD +   +++ +N +  G      P  ALYLY  M
Sbjct: 35  YALSKLIEFSVLSPHFDGLTYAISVFDSIQEPNLLIWNTMFRGHALSSDPVSALYLYVCM 94

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +S G+  ++ TF  +L  C+ +  + EG QIH  VL LG  L+LY+ + L+ +Y++ G  
Sbjct: 95  ISLGLVPNSYTFPFLLKACAKSKAFREGQQIHGHVLKLGCDLDLYVHTSLIAMYVKNGRX 154

Query: 162 -------------------------------VRALDLFDELPERNLATWNLMLRAFCELS 190
                                            A  +FDE+P +++ +WN ++  + E  
Sbjct: 155 EDARKVFDQSSHRDVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETG 214

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----V 245
              E L ++ +M    V+P+  +   ++  C+    ++ G+Q+HS      W+D      
Sbjct: 215 NYKEALELFKEMMKTNVKPDESTMVTVLSACAQSASIELGRQVHS------WIDDHGFGS 268

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N+ + NAL+D Y  CG +  A   F+ +   DVISWN+++  Y   +L  +AL LF  M 
Sbjct: 269 NLKIVNALIDLYIKCGEVETASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 328

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFDHGSVHVQSALTDMYGKCNV 364
              + P+  + +  L   +  G +  G+ IH Y+ K L        ++++L DMY KC  
Sbjct: 329 RSGESPNEVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGD 388

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           IE++  VF+S   RSL   N+++      G    A ++F  M  +GI  D++T    L A
Sbjct: 389 IEAAQQVFDSMLNRSLSSWNAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSA 448

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            S S   +LG                                HI  S     KI +P + 
Sbjct: 449 CSHSGMLDLGR-------------------------------HIFRSMTEDYKI-TPKLE 476

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            +  +++    +G+ +EA +M+  M    + PD V +  +L  C   G V+ G+
Sbjct: 477 HYGCMIDLLGHSGLFKEAEEMINSM---EMDPDGVIWCSLLKACKMHGNVELGE 527



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 193/393 (49%), Gaps = 35/393 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +  +G++ SA+K+FDE+P +D+V++N LISG  +  + K+AL L+ EM+
Sbjct: 168 DVVSYTALIKGYASNGYIXSAQKMFDEIPVKDVVSWNALISGYAETGNYKEALELFKEMM 227

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K   ST  +VLS C+ +     G Q+H  +   GFG NL I + L+DLY++ G   
Sbjct: 228 KTNVKPDESTMVTVLSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 287

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 288 TASGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNEVTMLSILPACA 347

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++ K L  V     +  +L+D Y+ CG +  A++ FD +    + SW
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVSNPSSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +     A ++F RM+     P   +FV  L+  S +G +  G+        
Sbjct: 408 NAMIFGFAMHGRANPAFDIFSRMRKDGIEPDDITFVGLLSACSHSGMLDLGR-------- 459

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                   H+  ++T+ Y             +  P   LE    ++  L HSG  K+A E
Sbjct: 460 --------HIFRSMTEDY-------------KITP--KLEHYGCMIDLLGHSGLFKEAEE 496

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           M   M    +  D V   + LKA  +  +  LG
Sbjct: 497 MINSM---EMDPDGVIWCSLLKACKMHGNVELG 526


>gi|50251760|dbj|BAD27693.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222623393|gb|EEE57525.1| hypothetical protein OsJ_07836 [Oryza sativa Japonica Group]
          Length = 667

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 178/615 (28%), Positives = 310/615 (50%), Gaps = 14/615 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYN--LLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           +   G  +SA  L  +MP    V+++  LL S  G   H ++AL +Y  M +        
Sbjct: 55  YCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCH-REALAVYSAMRAF----DHL 109

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TF      C+       G  +HCR L+ GFG + Y+ + L+ +YM  G    A  +F  +
Sbjct: 110 TFPFAAKACAGLRLGRHGRAVHCRALAAGFGGDTYVQNALISMYMSCGDVGAAEAVFGAM 169

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             R + +WN ++    +    +  L ++ +M A+GV  +  +   ++  C+    L+ G+
Sbjct: 170 RNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKDLNTGR 229

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYAD 290
            +H  V   G  D  + V NAL+D Y  C SL +A++ FD    D DV+SW +++  Y  
Sbjct: 230 AVHRLVEDKGLGDY-VAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMIGAYVL 288

Query: 291 YDLIFDALELFFRMQLC-RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
            D  F+A+ L  +M +     P+  + V  L+  +   +    K  H    +LG     +
Sbjct: 289 NDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKCTHALCIRLGLK-SDI 347

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V++AL D Y +C  ++      E    R+ E  N+ ++    SG  K A+E+F  M+ E
Sbjct: 348 AVETALIDAYARCGKMKLMRLTLERGSWRA-ETWNAALSGYTVSGREKKAIELFKRMIAE 406

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            +  D  T+++ L A +   SA+L   + +HC  +  GF  +  ++  L+D YS+ G ++
Sbjct: 407 SVRPDSATMASILPAYA--ESADLKEGKNIHCFLLTLGFLRSTEIATGLIDVYSKAGDLD 464

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +  +F+ +P  +VV +T+I+ GY  +G  R A+ + + M++ G  P+ VT   +L  C+
Sbjct: 465 AAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNTVTIATLLYACS 524

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+GM+ EG  VF  M++V+G+  + +HYSC++DMLGRAG +++A  L+Q  P      +W
Sbjct: 525 HAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVW 584

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +C +H N   G   A  L +L+P +   Y  + N Y+    +     +R   + R
Sbjct: 585 GALLGACVLHKNVEFGEVAAKRLFQLDPENTGSYVLLGNIYAAADRWRDVQDVRRMMVER 644

Query: 650 KLTRDIGHSLIEVNS 664
            L ++ G SL+E  S
Sbjct: 645 GLLKEPGSSLVEARS 659



 Score =  148 bits (374), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 216/457 (47%), Gaps = 17/457 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N  I  ++  G + +A+ +F  M  R +V++N +I+GC K  + ++AL ++ EM 
Sbjct: 142 DTYVQNALISMYMSCGDVGAAEAVFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMA 201

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G+    +T  SVL  C+ A     G  +H  V   G G  + + + L+D+Y +     
Sbjct: 202 ADGVGIDRATVVSVLPACAQAKDLNTGRAVHRLVEDKGLGDYVAVKNALIDMYGKCRSLE 261

Query: 163 RALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRG 220
            A  +FD    ++++ +W  M+ A+    R  E + +  +M   G   PNG++  Y++  
Sbjct: 262 DARRVFDHCKHDKDVVSWTAMIGAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSA 321

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+        K  H+  I+LG +  +I V  AL+D Y+ CG +   + + +        +
Sbjct: 322 CASMPSGKHAKCTHALCIRLG-LKSDIAVETALIDAYARCGKMKLMRLTLERGSW-RAET 379

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+ +S Y        A+ELF RM     RP   +    L   + + ++  GK IH ++ 
Sbjct: 380 WNAALSGYTVSGREKKAIELFKRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLL 439

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            LGF   S  + + L D+Y K   ++++ A+F+  P + +    +++      G+ + A+
Sbjct: 440 TLGFLR-STEIATGLIDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAI 498

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG-----SCRLLHCCAIKSGFESNIAVS 455
            ++  MV+ G   + VT++T L A S +   + G       R +H      G   N    
Sbjct: 499 LLYDRMVESGGKPNTVTIATLLYACSHAGMIDEGIKVFKDMRNVH------GLMPNGEHY 552

Query: 456 CSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
             L+D   R G IE +H++ + +P  P+   + +++ 
Sbjct: 553 SCLVDMLGRAGRIEEAHRLIQDMPFEPSTSVWGALLG 589



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 115/455 (25%), Positives = 218/455 (47%), Gaps = 14/455 (3%)

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATW-NLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           PL  +Y   G    A +L  ++P+    ++ N +LR++  L    E L +Y+ M+A    
Sbjct: 50  PLFMVYCACGRPSSAHNLLAQMPQPPPVSFSNSLLRSYTGLGCHREALAVYSAMRAF--- 106

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            + L+F +  + C+   L   G+ +H   +  G+   + +V NAL+  Y +CG +  A+ 
Sbjct: 107 -DHLTFPFAAKACAGLRLGRHGRAVHCRALAAGF-GGDTYVQNALISMYMSCGDVGAAEA 164

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +    V+SWN++++          ALE+F  M          + V  L   ++  +
Sbjct: 165 VFGAMRNRTVVSWNAVIAGCVKNGYAERALEVFGEMAADGVGIDRATVVSVLPACAQAKD 224

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP-GRSLECCNSLM 387
           +  G+ +H  V   G     V V++AL DMYGKC  +E +  VF+     + +    +++
Sbjct: 225 LNTGRAVHRLVEDKGLGD-YVAVKNALIDMYGKCRSLEDARRVFDHCKHDKDVVSWTAMI 283

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
            + + +    +A+ +   M+  G    + VT+   L A +   S     C   H   I+ 
Sbjct: 284 GAYVLNDRAFEAISLGCQMLMSGAAWPNGVTMVYLLSACASMPSGKHAKC--THALCIRL 341

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G +S+IAV  +L+DAY+RCG ++L     E+  S     + + ++GY+ +G  ++A+++ 
Sbjct: 342 GLKSDIAVETALIDAYARCGKMKLMRLTLER-GSWRAETWNAALSGYTVSGREKKAIELF 400

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
           + MI   + PD  T   +L     S  +KEG+ +   + ++ G     +  + +ID+  +
Sbjct: 401 KRMIAESVRPDSATMASILPAYAESADLKEGKNIHCFLLTL-GFLRSTEIATGLIDVYSK 459

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           AG LD A  L Q  P   D + W++++    +HG+
Sbjct: 460 AGDLDAAWALFQWLP-EKDVVAWTTIIAGYGIHGH 493



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 47/137 (34%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID + K+G L++A  LF  +P +D+V +  +I+G G   H + A+ LYD MV  G K + 
Sbjct: 454 IDVYSKAGDLDAAWALFQWLPEKDVVAWTTIIAGYGIHGHARTAILLYDRMVESGGKPNT 513

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            T +++L  CS+AG   EGI++   + ++ G   N    S LVD+  R G    A  L  
Sbjct: 514 VTIATLLYACSHAGMIDEGIKVFKDMRNVHGLMPNGEHYSCLVDMLGRAGRIEEAHRLIQ 573

Query: 170 ELP-ERNLATWNLMLRA 185
           ++P E + + W  +L A
Sbjct: 574 DMPFEPSTSVWGALLGA 590


>gi|255572205|ref|XP_002527042.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223533604|gb|EEF35342.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 520

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 158/487 (32%), Positives = 277/487 (56%), Gaps = 11/487 (2%)

Query: 93  QALYLYDEMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           +AL L+D ++ +  ++  + T+ SVL  C   G Y  G  IH  ++  GF  ++ + S L
Sbjct: 12  EALELFDRLLQYPYLQPDSFTYPSVLKACGGLGRYDYGRMIHTHLIKSGFVFDIVVASSL 71

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           V L+ +      A+ LFDE+PER++A WN ++  + +  + ++ L M+ KM+  G EPN 
Sbjct: 72  VSLHAKCNLFGYAIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDSGFEPNS 131

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   ++  C+  + L+ GK++H  V++ G V ++ FV +ALVD Y   G L  AK  F+
Sbjct: 132 VTLTTVISSCARLLDLERGKEIHREVMQNGMV-LDGFVGSALVDMYGKFGCLDLAKDIFE 190

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P   +++WNS+++ Y+      + +ELF+RM +   +P++ +    L   SR  ++  
Sbjct: 191 QMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHLQH 250

Query: 332 GKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
           G+ IHGY  +  +  D   + V S L ++Y KC  ++S+  +F   P  ++   N +++ 
Sbjct: 251 GRFIHGYAVRNRVQLD---IFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISG 307

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
            +  G+   A++M+  M    +  D VT S+ L A S  A+   G  + +H C  K+  E
Sbjct: 308 YVTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKG--KEIHNCITKNDLE 365

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           +N  V  +L+D Y++CG ++ +  VF K+P  +++ +TSI++ Y  +G   EAL + E +
Sbjct: 366 TNEIVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEEL 425

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
            Q    PD VTFL VL+ C+H+G+V +G   FN M + YGI    +HYSC+ID+LGR  I
Sbjct: 426 QQSKASPDAVTFLAVLSACSHAGLVDKGYYYFNQMITNYGIKPGLEHYSCLIDLLGR--I 483

Query: 570 LDKAEEL 576
            ++++EL
Sbjct: 484 QEQSQEL 490



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 118/423 (27%), Positives = 213/423 (50%), Gaps = 12/423 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A +LFDEMP RD+  +N +IS   +    ++AL ++ +M   G + ++ T ++V+S C+ 
Sbjct: 84  AIQLFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDSGFEPNSVTLTTVISSCAR 143

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G +IH  V+  G  L+ ++GS LVD+Y + G    A D+F+++P++ L  WN +
Sbjct: 144 LLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDLAKDIFEQMPKKTLVAWNSL 203

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  +   +   E + ++ +M  EG +P   +   ++  CS    L  G+ +H + ++   
Sbjct: 204 IAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHLQHGRFIHGYAVR-NR 262

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           V ++IFV++ L++ Y  CG +  A+  F  +P  +V+ WN ++S Y        AL+++ 
Sbjct: 263 VQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGYVTIGDYVKALDMYD 322

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M++   +P   +F   L+  S+   +  GK+IH  +TK   +   + V  AL DMY KC
Sbjct: 323 EMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITKNDLETNEI-VMGALLDMYAKC 381

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             ++ +++VF   P R L    S++++    G   +A+ +F  +       D VT    L
Sbjct: 382 GAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQSKASPDAVTFLAVL 441

Query: 423 KALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
            A S +   + G     +++    IK G E     SC L+D     G I+   Q   +IP
Sbjct: 442 SACSHAGLVDKGYYYFNQMITNYGIKPGLEH---YSC-LIDL---LGRIQEQSQELNEIP 494

Query: 480 SPN 482
            PN
Sbjct: 495 CPN 497



 Score =  176 bits (445), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 107/360 (29%), Positives = 185/360 (51%), Gaps = 12/360 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQ-LNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+TT+  +C  ++ L     +      N   L+ +  +  +D + K G L+ AK +
Sbjct: 129 PNSVTLTTVISSCARLLDLERGKEIHREVMQNGMVLDGFVGSALVDMYGKFGCLDLAKDI 188

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F++MP + +V +N LI+G       K+ + L+  M   G K + +T SS+L  CS A   
Sbjct: 189 FEQMPKKTLVAWNSLIAGYSSAADSKECIELFWRMNMEGTKPTVTTLSSILLACSRAAHL 248

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  IH   +     L++++ S L++LY + G    A ++F  LP+ N+  WN+M+  +
Sbjct: 249 QHGRFIHGYAVRNRVQLDIFVSSGLIELYFKCGKVQSAENIFYMLPKANVVLWNVMISGY 308

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
             +    + L MY++MK   V+P+ ++F  ++  CS    L++GK++H+ + K   ++ N
Sbjct: 309 VTIGDYVKALDMYDEMKIASVKPDAVTFSSILSACSQLAALEKGKEIHNCITK-NDLETN 367

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             V  AL+D Y+ CG++ EA   F+ +P  D++SW SI+S Y  +    +AL LF  +Q 
Sbjct: 368 EIVMGALLDMYAKCGAVDEALSVFNKLPERDLLSWTSIISAYGSHGQALEALRLFEELQQ 427

Query: 307 CRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
            +  P   +F+  L+  S  G V     YF + I  Y  K G +H      S L D+ G+
Sbjct: 428 SKASPDAVTFLAVLSACSHAGLVDKGYYYFNQMITNYGIKPGLEH-----YSCLIDLLGR 482



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/180 (28%), Positives = 95/180 (52%), Gaps = 4/180 (2%)

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D  T  + LKA       + G  R++H   IKSGF  +I V+ SL+  +++C     + Q
Sbjct: 29  DSFTYPSVLKACGGLGRYDYG--RMIHTHLIKSGFVFDIVVASSLVSLHAKCNLFGYAIQ 86

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F+++P  +V C+ ++++ Y ++G   +AL+M   M   G  P+ VT   V++ C     
Sbjct: 87  LFDEMPERDVACWNTVISCYYQDGKAEKALEMFGKMRDSGFEPNSVTLTTVISSCARLLD 146

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           ++ G+ +   +    G+  D    S ++DM G+ G LD A+++ +Q P     + W+SL+
Sbjct: 147 LERGKEIHREVMQ-NGMVLDGFVGSALVDMYGKFGCLDLAKDIFEQMP-KKTLVAWNSLI 204


>gi|356542011|ref|XP_003539465.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Glycine max]
          Length = 876

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 174/618 (28%), Positives = 321/618 (51%), Gaps = 8/618 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +D + K+G++   +++FDEM  RD+V++N L++G    R   Q   L+  M   G +
Sbjct: 141 NSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFNDQVWELFCLMQVEGYR 200

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               T S+V++  +N G    G+QIH  V+ LGF     + + L+ +  + G    A  +
Sbjct: 201 PDYYTVSTVIAALANQGAVAIGMQIHALVVKLGFETERLVCNSLISMLSKSGMLRDARVV 260

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD +  ++  +WN M+       +  E    +N M+  G +P   +F  +++ C+    L
Sbjct: 261 FDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPTHATFASVIKSCASLKEL 320

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVS 286
              + LH   +K G +  N  V  AL+   + C  + +A   F  +  V  V+SW +++S
Sbjct: 321 GLVRVLHCKTLKSG-LSTNQNVLTALMVALTKCKEIDDAFSLFSLMHGVQSVVSWTAMIS 379

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y        A+ LF  M+    +P+  ++   L       +  F  +IH  V K  ++ 
Sbjct: 380 GYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTILTVQ----HAVFISEIHAEVIKTNYEK 435

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            S  V +AL D + K   I  +V VFE    + +   ++++     +G  ++A ++F  +
Sbjct: 436 SS-SVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLAGYAQAGETEEAAKIFHQL 494

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             EGI  +E T  + + A + + +A++   +  H  AIK    + + VS SL+  Y++ G
Sbjct: 495 TREGIKPNEFTFCSIINACT-APTASVEQGKQFHAYAIKLRLNNALCVSSSLVTLYAKRG 553

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +IE +H++F++    ++V + S+++GY+++G  ++AL++ E M +R L  D +TF+ V++
Sbjct: 554 NIESAHEIFKRQKERDLVSWNSMISGYAQHGQAKKALEVFEEMQKRNLEVDAITFIGVIS 613

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C H+G+V +GQ  FN M + + I+   +HYSCMID+  RAG+L KA +++   P     
Sbjct: 614 ACAHAGLVGKGQNYFNIMINDHHINPTMEHYSCMIDLYSRAGMLGKAMDIINGMPFPPAA 673

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
            +W  +L + RVH N  +G+  A  ++ LEP   A Y  +SN Y+  G +   + +R+  
Sbjct: 674 TVWRIVLAASRVHRNIELGKLAAEKIISLEPQHSAAYVLLSNIYAAAGNWHEKVNVRKLM 733

Query: 647 LARKLTRDIGHSLIEVNS 664
             R++ ++ G+S IEV +
Sbjct: 734 DKRRVKKEPGYSWIEVKN 751



 Score =  217 bits (553), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 148/611 (24%), Positives = 293/611 (47%), Gaps = 13/611 (2%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA 72
           +T  A T TS  P+        +C  NP L  +         ++      A++LFD+ P 
Sbjct: 5   MTLRALTNTSTNPILRIRRYQLHCHANPLLQSHVVALNARTLLRDSDPRFAQQLFDQTPL 64

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           RD+  +N L+    +    ++AL+L+  +   G+   + T S VLSVC+ +   T G Q+
Sbjct: 65  RDLKQHNQLLFRYSRCDQTQEALHLFVSLYRSGLSPDSYTMSCVLSVCAGSFNGTVGEQV 124

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           HC+ +  G   +L +G+ LVD+Y + G       +FDE+ +R++ +WN +L  +      
Sbjct: 125 HCQCVKCGLVHHLSVGNSLVDMYTKTGNVRDGRRVFDEMGDRDVVSWNSLLTGYSWNRFN 184

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           D+V  ++  M+ EG  P+  +   ++   +    +  G Q+H+ V+KLG+ +    V N+
Sbjct: 185 DQVWELFCLMQVEGYRPDYYTVSTVIAALANQGAVAIGMQIHALVVKLGF-ETERLVCNS 243

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L+   S  G L +A+  FD +   D +SWNS+++ +       +A E F  MQL   +P+
Sbjct: 244 LISMLSKSGMLRDARVVFDNMENKDSVSWNSMIAGHVINGQDLEAFETFNNMQLAGAKPT 303

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +F   +   +    +   + +H    K G      +V +AL     KC  I+ + ++F
Sbjct: 304 HATFASVIKSCASLKELGLVRVLHCKTLKSGLSTNQ-NVLTALMVALTKCKEIDDAFSLF 362

Query: 373 ESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
               G +S+    ++++  L +G+   AV +F  M  EG+  +  T ST    L+V  + 
Sbjct: 363 SLMHGVQSVVSWTAMISGYLQNGDTDQAVNLFSLMRREGVKPNHFTYSTI---LTVQHAV 419

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
            +     +H   IK+ +E + +V  +L+DA+ + G+I  + +VFE I + +V+ +++++ 
Sbjct: 420 FISE---IHAEVIKTNYEKSSSVGTALLDAFVKIGNISDAVKVFELIETKDVIAWSAMLA 476

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           GY++ G   EA  +   + + G+ P++ TF  ++  C       E    F++      ++
Sbjct: 477 GYAQAGETEEAAKIFHQLTREGIKPNEFTFCSIINACTAPTASVEQGKQFHAYAIKLRLN 536

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611
                 S ++ +  + G ++ A E+ ++     D + W+S++     HG     ++   +
Sbjct: 537 NALCVSSSLVTLYAKRGNIESAHEIFKRQK-ERDLVSWNSMISGYAQHGQ---AKKALEV 592

Query: 612 LMELEPVDFAV 622
             E++  +  V
Sbjct: 593 FEEMQKRNLEV 603


>gi|224087027|ref|XP_002308034.1| predicted protein [Populus trichocarpa]
 gi|222854010|gb|EEE91557.1| predicted protein [Populus trichocarpa]
          Length = 599

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 169/566 (29%), Positives = 309/566 (54%), Gaps = 11/566 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G K +  T   +L  CS+ G    G QIH  V+  GF  N+++G+ L+ +Y R G 
Sbjct: 1   MCEFGEKFNEHTCVVILQACSDIGDVVLGEQIHGFVIKSGFEENVFVGTSLISMYSRSGN 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F+ +  ++L   N M+  + +       + ++  + + G++PN  +F  ++  
Sbjct: 61  FDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLISVGLDPNDYTFTNIIST 120

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C++    +EGKQLH   +K G V +   V NA++  Y   G + EA + F  +   ++IS
Sbjct: 121 CNV----EEGKQLHGLAVKYG-VLLQTSVGNAVITMYGKNGMVEEAARMFSVMNKKNLIS 175

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +++S Y        A++ F  ++ C            L+  S   N+  G QIHG V 
Sbjct: 176 WTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCSECKNLDLGTQIHGLVI 235

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS-GNIKDA 399
           KLG+    +++ +AL D+Y KC   +S+  VF     RS    N+++   + +  N +D 
Sbjct: 236 KLGYPC-DINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFNAILVGFIENDSNEEDP 294

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           +     +   GI  D V+ S   + LS+SA+ A+L   R LH  +IK+GF  +I+VS +L
Sbjct: 295 MVFLSQLRLAGIKPDSVSFS---RLLSLSANRASLVKGRGLHAYSIKTGFAGHISVSNAL 351

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG +E ++Q F  + + + + + +I++ YS +G G +AL + + M ++G  PD+
Sbjct: 352 ITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALLLYQEMEEKGFTPDE 411

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +T L +L  C +SG+ ++G  +FN+M+S YGI    +HY+CM+D+LGRAG L +A +++ 
Sbjct: 412 ITILVILQACTYSGLSEDGLHLFNTMESKYGIQPLLEHYACMVDLLGRAGYLSQAMDIIN 471

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           ++P     ++W +L+  C++ G+  +G+  +  L++L P +   Y  VSN Y+  G  + 
Sbjct: 472 RSPFSESTLLWRTLVNVCKLCGDLNLGKLASKHLLDLSPDEAGSYVLVSNIYAGEGMIDE 531

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
           + ++R T    KL+++ G S +E+++
Sbjct: 532 ASKVRTTMKDLKLSKEAGSSWVEIDN 557



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 108/452 (23%), Positives = 224/452 (49%), Gaps = 11/452 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++     I  + +SG+ + A+K+F+ +  +D+   N +I   GK  + K+A+ ++  ++
Sbjct: 44  NVFVGTSLISMYSRSGNFDEAEKVFNGVGCKDLRCLNCMILEYGKAGYEKRAIGVFIYLI 103

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           S G+  +  TF++++S C+      EG Q+H   +  G  L   +G+ ++ +Y + G   
Sbjct: 104 SVGLDPNDYTFTNIISTCN----VEEGKQLHGLAVKYGVLLQTSVGNAVITMYGKNGMVE 159

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  + ++NL +W  ++  +      ++ +  + +++  GVE +      ++ GCS
Sbjct: 160 EAARMFSVMNKKNLISWTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGCS 219

Query: 223 IGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               LD G Q+H  VIKLG+  D+NI    AL+D Y+ C +   A+  F+ +      S+
Sbjct: 220 ECKNLDLGTQIHGLVIKLGYPCDINI--GTALIDLYAKCKNFQSARTVFNGLSPRSTASF 277

Query: 282 NSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           N+I+  + + D    D +    +++L   +P   SF   L+ ++   ++  G+ +H Y  
Sbjct: 278 NAILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSI 337

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K GF  G + V +AL  MY KC ++E +   F S         N+++++    G  + A+
Sbjct: 338 KTGF-AGHISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKAL 396

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            ++  M ++G   DE+T+   L+A + S  +  G   L +    K G +  +     ++D
Sbjct: 397 LLYQEMEEKGFTPDEITILVILQACTYSGLSEDG-LHLFNTMESKYGIQPLLEHYACMVD 455

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
              R G++  +  +  + P S + + + +++N
Sbjct: 456 LLGRAGYLSQAMDIINRSPFSESTLLWRTLVN 487



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 83/306 (27%), Positives = 159/306 (51%), Gaps = 5/306 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ++S  L P   T T +  TC          L   Y      L     N  I  + K+G +
Sbjct: 102 LISVGLDPNDYTFTNIISTCNVEEGKQLHGLAVKY---GVLLQTSVGNAVITMYGKNGMV 158

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A ++F  M  ++++++  LISG  +  + ++A+  + E+   G++  +   +++L  C
Sbjct: 159 EEAARMFSVMNKKNLISWTALISGYTRNGYGEKAVDGFLELRGCGVECDSGLLATILDGC 218

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           S       G QIH  V+ LG+  ++ IG+ L+DLY +      A  +F+ L  R+ A++N
Sbjct: 219 SECKNLDLGTQIHGLVIKLGYPCDINIGTALIDLYAKCKNFQSARTVFNGLSPRSTASFN 278

Query: 181 LMLRAFCEL-SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            +L  F E  S  ++ +   ++++  G++P+ +SF  ++   +    L +G+ LH++ IK
Sbjct: 279 AILVGFIENDSNEEDPMVFLSQLRLAGIKPDSVSFSRLLSLSANRASLVKGRGLHAYSIK 338

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+   +I V+NAL+  Y+ CG + +A ++F+ +  +D ISWN+I+S Y+ +     AL 
Sbjct: 339 TGFAG-HISVSNALITMYAKCGIVEDAYQAFNSMSANDCISWNAIISAYSLHGQGEKALL 397

Query: 300 LFFRMQ 305
           L+  M+
Sbjct: 398 LYQEME 403


>gi|297796091|ref|XP_002865930.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297311765|gb|EFH42189.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 878

 Score =  284 bits (726), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 191/668 (28%), Positives = 334/668 (50%), Gaps = 13/668 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M+++ + P   T +++  +C  +  LS    +  S  +   + N    +   D + K G 
Sbjct: 114 MMASGIHPNEFTFSSVIRSCAGLGDLSYGGRVHGSVLKTGFEGNSVVGSSLTDLYSKCGK 173

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A++LF  +   D +++ ++IS     R   +AL  Y EM+  G+  +  TF  +L  
Sbjct: 174 LKEARELFSSLQNADTISWTMMISSLVGARKWSEALRFYSEMIKAGVPPNEFTFVKLLGA 233

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            S  G    G  IH  ++  G  LN+ + + LV  Y        A+ + +   E+++  W
Sbjct: 234 SSFLGLEF-GKTIHSSIIVRGIPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLW 292

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             ++  F    R  E +  + +M++ G+ PN  ++  ++  CS    LD GKQ+HS  IK
Sbjct: 293 TSVVSGFVRNLRAKEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIK 352

Query: 240 LGWVDVNIFVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           +G+ D +  V NALV  Y  C  S +EA + F  +   +V+SW +++    D+    D  
Sbjct: 353 VGFED-STDVGNALVSMYMKCSASEVEASRVFGAMISPNVVSWTTLILGLVDHGFEQDCF 411

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            L   M      P+  +    L   S+   +    +IHGY+ +   D G + V ++L D 
Sbjct: 412 GLLMEMVKREVEPNFVTLSGVLRACSKLKYLRLVLEIHGYLLRRHVD-GEMIVGNSLVDA 470

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y     ++ +  V  S   R      SL+T     G  + A+ +   M  +GI +D+++L
Sbjct: 471 YASSGKVDYAWNVTRSMDMRDNITYTSLVTRFNELGKHEMALSVINHMYGDGIRMDQLSL 530

Query: 419 STTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
                   +SASANLG   + + LHC ++KSGF   ++V  SL+D YS+CG +E + +VF
Sbjct: 531 PGF-----ISASANLGAHETGKHLHCYSVKSGFSGAVSVLNSLVDMYSKCGSLEDAKKVF 585

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           E+I  P+VV +  +++G +  G    AL   E M  +G  PD VTFL +L+ C+   + +
Sbjct: 586 EEIAMPDVVSWNGLVSGLASIGRISSALSAFEEMRMKGTEPDSVTFLILLSACSKGRLTE 645

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
            G   F SMK+++ ++   +HY  ++ +LGRAG L++A  +++      + M++ +LLR+
Sbjct: 646 MGLEYFQSMKTIHNMEPQIEHYVHLVGILGRAGRLEEATGVVETMHLKPNAMIFKTLLRA 705

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           CR HGN  +G  +AN  + L P D A Y  +++ Y E G+ E++ + R     + L + +
Sbjct: 706 CRYHGNLSLGEDMANKGLALAPSDPAFYILLADLYDESGKPELAQKTRNLMSEKGLCKKL 765

Query: 656 GHSLIEVN 663
             S +EV 
Sbjct: 766 SKSTVEVQ 773



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 168/617 (27%), Positives = 297/617 (48%), Gaps = 30/617 (4%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPL----SSSLLLDSYCQPNPQLNIYSS----NRTIDDF 54
           ++  L R   ++ L  +C  I+      SS + L  +C P  +  +  +    N  +  +
Sbjct: 9   ASTFLSRTNELSNLQQSCIRILSFCESSSSRIGLHIHC-PVIKFGLLENLDLCNNLLSLY 67

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           +K+  + +A+KLFDEMP R +  + ++IS   K +    AL L++EM++ GI  +  TFS
Sbjct: 68  LKTDGIWNARKLFDEMPQRTVFAWTVMISAFTKSQEFASALSLFEEMMASGIHPNEFTFS 127

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           SV+  C+  G  + G ++H  VL  GF  N  +GS L DLY + G    A +LF  L   
Sbjct: 128 SVIRSCAGLGDLSYGGRVHGSVLKTGFEGNSVVGSSLTDLYSKCGKLKEARELFSSLQNA 187

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +  +W +M+ +     +  E LR Y++M   GV PN  +F  ++ G S  + L+ GK +H
Sbjct: 188 DTISWTMMISSLVGARKWSEALRFYSEMIKAGVPPNEFTFVKLL-GASSFLGLEFGKTIH 246

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           S +I  G + +N+ +  +LV FYS    + +A +  +     DV  W S+VS +      
Sbjct: 247 SSIIVRG-IPLNVVLKTSLVYFYSHFSIMEDAVRVLNSTGEQDVFLWTSVVSGFVRNLRA 305

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +A+  F  M+     P+  ++   L+  S   ++  GKQIH    K+GF+  S  V +A
Sbjct: 306 KEAVGTFLEMRSLGLHPNNFTYSAILSLCSAVRSLDLGKQIHSQTIKVGFED-STDVGNA 364

Query: 355 LTDMYGKCNVIESSVA-VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           L  MY KC+  E   + VF +    ++    +L+  L+  G  +D   +   MV   +  
Sbjct: 365 LVSMYMKCSASEVEASRVFGAMISPNVVSWTTLILGLVDHGFEQDCFGLLMEMVKREVEP 424

Query: 414 DEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           + VTLS  L+A S      L   RL   +H   ++   +  + V  SL+DAY+  G ++ 
Sbjct: 425 NFVTLSGVLRACS-----KLKYLRLVLEIHGYLLRRHVDGEMIVGNSLVDAYASSGKVDY 479

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +  V   +   + + +TS++  ++  G    AL ++  M   G+  D+++    ++   +
Sbjct: 480 AWNVTRSMDMRDNITYTSLVTRFNELGKHEMALSVINHMYGDGIRMDQLSLPGFISASAN 539

Query: 531 SGMVKEGQ-LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            G  + G+ L   S+KS  G        + ++DM  + G L+ A+++ ++     D + W
Sbjct: 540 LGAHETGKHLHCYSVKS--GFSGAVSVLNSLVDMYSKCGSLEDAKKVFEEI-AMPDVVSW 596

Query: 590 SSLLRSCRVHGNEIIGR 606
           + L     V G   IGR
Sbjct: 597 NGL-----VSGLASIGR 608


>gi|20146226|dbj|BAB89008.1| PPR repeat protein-like [Oryza sativa Japonica Group]
 gi|125573391|gb|EAZ14906.1| hypothetical protein OsJ_04836 [Oryza sativa Japonica Group]
          Length = 785

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 173/632 (27%), Positives = 328/632 (51%), Gaps = 12/632 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +++  N  +  + + G    A++L DEMP R+ V++NLLI    +      +L    
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
                G+     ++++ L+ CS AG    G  +H   +  G    +++ + LV +Y + G
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD   ER+  +WN ++  +      +E++R++  M+  G+  N  +   +++
Sbjct: 159 EMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIK 218

Query: 220 GCSI--GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
            CS      +D  + +H  VIK G +D ++F+ +A++D Y+  G+L+EA   F  +   +
Sbjct: 219 CCSGRGDGTMDIAEAVHGCVIKAG-LDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 278 VISWNSIVSIYADYDLIF------DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
           V+ +N++++ +   + +       +AL L+  +Q    +P+  +F   L   +  G + F
Sbjct: 278 VVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEF 337

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           GKQIHG V K  F      + SAL D+Y     +E     F S+P   +    ++++  +
Sbjct: 338 GKQIHGQVIKYTFQEDDF-IGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCV 396

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            +   + A+ +F   +  G+  D  T+S+ + A +  A A  G    + C A KSGF+  
Sbjct: 397 QNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGE--QIQCFATKSGFDRF 454

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             +  S +  Y+R G ++ + + F+++ S +VV ++++++ ++++G  R+AL   + M+ 
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
             ++P+++TFL VL  C+H G+V EG   + +M   YG+    +H +C++D+LGRAG L 
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETMTKDYGLSPTIKHCTCVVDLLGRAGRLA 574

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
            AE  +  +    D ++W SLL SCR+H +   G+ VAN +MELEP   A Y  + N Y 
Sbjct: 575 DAEAFISNSIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYL 634

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           + GE  ++ + R+    R + ++ G S IE+ 
Sbjct: 635 DAGELSLASKTRDLMKQRGVKKEPGLSWIELK 666


>gi|296088174|emb|CBI35666.3| unnamed protein product [Vitis vinifera]
          Length = 762

 Score =  283 bits (725), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 175/585 (29%), Positives = 292/585 (49%), Gaps = 4/585 (0%)

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
           NL +    K    K+A     EM    +  +  ++  +   C       +G  IH R+  
Sbjct: 56  NLHLVSLSKQGKLKEAHDFLKEMDDADVSVTPHSYQCLFEACGKLRSLADGRLIHDRLRR 115

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
                +  I + L+ +Y   G  +    +FDE+  +NL +W +++ A+ +    ++ +R+
Sbjct: 116 TVKNPSGSIENCLLRMYCDCGSCIDVQKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRL 175

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           ++ M+A G+ PN   +  +++ C     L+ GKQ+HSHVI+   ++ NI V  A+ + Y 
Sbjct: 176 FSDMQASGIRPNSAVYMSLLQSCLGPSFLELGKQIHSHVIR-AQLNANITVETAICNMYV 234

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            CG L  AK  FD +   + ++W  ++  Y     +  ALELF RM +         F  
Sbjct: 235 RCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMAMEGVELDEFVFSI 294

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L       +   G+QIH ++ KLG +   V V + L D Y KC  IES+   F      
Sbjct: 295 VLKVCCGLEDWDMGRQIHSHIVKLGAE-SEVSVGTPLVDFYVKCGDIESAYRSFGRISEP 353

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           +    ++L++    SG ++D +++F  +  EG+ L+    ++  +A +  A+ N+GS   
Sbjct: 354 NDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACAAQANLNMGS--Q 411

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
            H  AIK G  S +    +++  YS+CG ++ + + FE I  P+ V +T+I++GY+ +G 
Sbjct: 412 AHGDAIKRGLVSYLYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWTAIISGYAYHGN 471

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
             EAL     M   G+ P+ VTF+ VL  C+HSG+V E +    SM   YG+     HY 
Sbjct: 472 AAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQYLGSMSRDYGVKPTIDHYD 531

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           CMID   RAG+L +A EL+ + P   D M W SLL  C  H +  +G+  A  L  L+P 
Sbjct: 532 CMIDTYSRAGLLQEALELINRMPFEPDAMSWKSLLGGCWAHCDLKLGKIAAENLFRLDPG 591

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           D A Y  + N YS  G++E +  +R+    R+L +++  S I V 
Sbjct: 592 DTAGYILLFNLYSAFGKWEEAGHVRKLMAERELKKEVSCSWISVK 636



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 112/437 (25%), Positives = 216/437 (49%), Gaps = 18/437 (4%)

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +K+FDEM  +++V++ ++IS   K    ++A+ L+ +M + GI+ +++ + S+L  C   
Sbjct: 142 QKVFDEMLMKNLVSWVIVISAYAKNGELEKAIRLFSDMQASGIRPNSAVYMSLLQSCLGP 201

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
            F   G QIH  V+      N+ + + + ++Y+R G    A  +FD +  +N  TW  ++
Sbjct: 202 SFLELGKQIHSHVIRAQLNANITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLM 261

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
             + +  + +  L ++ +M  EGVE +   F  +++ C      D G+Q+HSH++KLG  
Sbjct: 262 VGYTQAKKLEVALELFARMAMEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLG-A 320

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           +  + V   LVDFY  CG +  A +SF  I   + +SW++++S ++    + D +++F  
Sbjct: 321 ESEVSVGTPLVDFYVKCGDIESAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTS 380

Query: 304 MQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           ++   +   + SF+        +   N+  G Q HG   K G     ++ +SA+  MY K
Sbjct: 381 LR--SEGVVLNSFIYTSVFQACAAQANLNMGSQAHGDAIKRGL-VSYLYGESAMVTMYSK 437

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  ++ +   FES          ++++   + GN  +A+  F  M   G+  + VT    
Sbjct: 438 CGRLDYARRAFESIDEPDAVAWTAIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAV 497

Query: 422 LKALSVS-----ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           L A S S     A   LGS       +   G +  I     ++D YSR G ++ + ++  
Sbjct: 498 LTACSHSGLVAEAKQYLGS------MSRDYGVKPTIDHYDCMIDTYSRAGLLQEALELIN 551

Query: 477 KIP-SPNVVCFTSIMNG 492
           ++P  P+ + + S++ G
Sbjct: 552 RMPFEPDAMSWKSLLGG 568



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/337 (28%), Positives = 169/337 (50%), Gaps = 7/337 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI       + +V+ G L  AK +FD M A++ VT+  L+ G  + +  + AL L+  M 
Sbjct: 222 NITVETAICNMYVRCGWLEGAKLVFDGMDAQNAVTWTGLMVGYTQAKKLEVALELFARMA 281

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++     FS VL VC     +  G QIH  ++ LG    + +G+PLVD Y++ G   
Sbjct: 282 MEGVELDEFVFSIVLKVCCGLEDWDMGRQIHSHIVKLGAESEVSVGTPLVDFYVKCGDIE 341

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F  + E N  +W+ ++  F +  R ++ ++++  +++EGV  N   +  + + C+
Sbjct: 342 SAYRSFGRISEPNDVSWSALISGFSQSGRLEDCIKIFTSLRSEGVVLNSFIYTSVFQACA 401

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ G Q H   IK G V   ++  +A+V  YS CG L  A+++F+ I   D ++W 
Sbjct: 402 AQANLNMGSQAHGDAIKRGLVSY-LYGESAMVTMYSKCGRLDYARRAFESIDEPDAVAWT 460

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I+S YA +    +AL  F RMQ    RP+  +F+  L   S +G V   KQ   Y+  +
Sbjct: 461 AIISGYAYHGNAAEALGFFRRMQSYGVRPNAVTFIAVLTACSHSGLVAEAKQ---YLGSM 517

Query: 343 GFDHG---SVHVQSALTDMYGKCNVIESSVAVFESAP 376
             D+G   ++     + D Y +  +++ ++ +    P
Sbjct: 518 SRDYGVKPTIDHYDCMIDTYSRAGLLQEALELINRMP 554


>gi|334185093|ref|NP_187175.2| mitochondrial editing factor 19 [Arabidopsis thaliana]
 gi|218546759|sp|Q9MA95.2|PP214_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g05240
 gi|332640689|gb|AEE74210.1| mitochondrial editing factor 19 [Arabidopsis thaliana]
          Length = 565

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 152/507 (29%), Positives = 282/507 (55%), Gaps = 11/507 (2%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F+ +   ++  WN M+R +     PD+ L  Y +M  +G  P+  +F Y+++ CS 
Sbjct: 60  ARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 119

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +  G  +H  V+K G+ +VN++V+  L+  Y  CG +    + F+ IP  +V++W S
Sbjct: 120 LRDIQFGSCVHGFVVKTGF-EVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGS 178

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S + + +   DA+E F  MQ    + +    V+ L    R  ++  GK  HG++  LG
Sbjct: 179 LISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLG 238

Query: 344 FDHG-------SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           FD         +V + ++L DMY KC  + ++  +F+  P R+L   NS++T    +G+ 
Sbjct: 239 FDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDA 298

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++A+ MF  M+D GI  D+VT  + ++A  +   + LG    +H    K+GF  + A+ C
Sbjct: 299 EEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQS--IHAYVSKTGFVKDAAIVC 356

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LI 515
           +L++ Y++ G  E + + FE +   + + +T ++ G + +G G EAL + + M ++G   
Sbjct: 357 ALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNAT 416

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD +T+L VL  C+H G+V+EGQ  F  M+ ++G++   +HY CM+D+L RAG  ++AE 
Sbjct: 417 PDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAER 476

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L++  P   +  +W +LL  C +H N  +  R+ +++ E E +   +Y  +SN Y++ G 
Sbjct: 477 LVKTMPVKPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGR 536

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           +     IRE+  ++++ + +GHS +E 
Sbjct: 537 WADVKLIRESMKSKRVDKVLGHSSVET 563



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 118/448 (26%), Positives = 204/448 (45%), Gaps = 21/448 (4%)

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           +L+ A+ +F+ +    +  +N +I G     +P +AL  Y EM+  G      TF  VL 
Sbjct: 56  NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLK 115

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            CS       G  +H  V+  GF +N+Y+ + L+ +YM  G     L +F+++P+ N+  
Sbjct: 116 ACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVA 175

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  ++  F   +R  + +  + +M++ GV+ N      ++  C     +  GK  H  + 
Sbjct: 176 WGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQ 235

Query: 239 KLGW-------VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            LG+       V  N+ +A +L+D Y+ CG L  A+  FD +P   ++SWNSI++ Y+  
Sbjct: 236 GLGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQN 295

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               +AL +F  M      P   +F+  +  +   G    G+ IH YV+K GF   +  V
Sbjct: 296 GDAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIV 355

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
             AL +MY K    ES+   FE    +       ++  L   G+  +A+ +F  M ++G 
Sbjct: 356 -CALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGN 414

Query: 412 GL-DEVTLSTTLKA-----LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
              D +T    L A     L           R LH      G E  +     ++D  SR 
Sbjct: 415 ATPDGITYLGVLYACSHIGLVEEGQRYFAEMRDLH------GLEPTVEHYGCMVDILSRA 468

Query: 466 GHIELSHQVFEKIP-SPNVVCFTSIMNG 492
           G  E + ++ + +P  PNV  + +++NG
Sbjct: 469 GRFEEAERLVKTMPVKPNVNIWGALLNG 496



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 161/345 (46%), Gaps = 10/345 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++N+Y S   +  ++  G +N   ++F+++P  ++V +  LISG         A+  + E
Sbjct: 139 EVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFRE 198

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF--------GLNLYIGSPLV 152
           M S+G+K + +    +L  C        G   H  +  LGF        G N+ + + L+
Sbjct: 199 MQSNGVKANETIMVDLLVACGRCKDIVTGKWFHGFLQGLGFDPYFQSKVGFNVILATSLI 258

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D+Y + G    A  LFD +PER L +WN ++  + +    +E L M+  M   G+ P+ +
Sbjct: 259 DMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKV 318

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +F  ++R   I      G+ +H++V K G+V  +  +  ALV+ Y+  G    AKK+F+ 
Sbjct: 319 TFLSVIRASMIQGCSQLGQSIHAYVSKTGFVK-DAAIVCALVNMYAKTGDAESAKKAFED 377

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQ-LCRKRPSIRSFVEFLNFASRTGNVYF 331
           +   D I+W  ++   A +    +AL +F RMQ      P   +++  L   S  G V  
Sbjct: 378 LEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEE 437

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           G++    +  L     +V     + D+  +    E +  + ++ P
Sbjct: 438 GQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMP 482



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 68/259 (26%), Positives = 129/259 (49%), Gaps = 2/259 (0%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR 89
           L  D Y Q     N+  +   ID + K G L +A+ LFD MP R +V++N +I+G  +  
Sbjct: 237 LGFDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNG 296

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
             ++AL ++ +M+  GI     TF SV+      G    G  IH  V   GF  +  I  
Sbjct: 297 DAEEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVC 356

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VE 208
            LV++Y + G +  A   F++L +++   W +++         +E L ++ +M+ +G   
Sbjct: 357 ALVNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNAT 416

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+G+++  ++  CS   L++EG++  + +  L  ++  +     +VD  S  G   EA++
Sbjct: 417 PDGITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAER 476

Query: 269 SFDFIPVD-DVISWNSIVS 286
               +PV  +V  W ++++
Sbjct: 477 LVKTMPVKPNVNIWGALLN 495


>gi|356495733|ref|XP_003516728.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Glycine max]
          Length = 770

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 177/629 (28%), Positives = 308/629 (48%), Gaps = 55/629 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NIY  N  +  + K G    A ++F ++P  + VT+  ++ G  +    K+A  L+  M+
Sbjct: 172 NIYVVNALLCMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLML 231

Query: 103 SHGIKESASTFSSVLSVCSNA--------GFYT--EGIQIHCRVLSLGFGLNLYIGSPLV 152
             GI+  + + SS+L VC+          G  T  +G Q+H   + LGF  +L++ + L+
Sbjct: 232 RKGIRVDSVSLSSMLGVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLL 291

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D+Y ++G    A  +F  L   ++ +WN+M+  +      ++      +M+++G EP+ +
Sbjct: 292 DMYAKIGDMDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDV 351

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           ++  M+  C     +  G+Q+                                    FD 
Sbjct: 352 TYINMLTACVKSGDVRTGRQI------------------------------------FDC 375

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +P   + SWN+I+S Y       +A+ELF +MQ   + P   +    L+  +  G +  G
Sbjct: 376 MPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHPDRTTLAVILSSCAELGFLEAG 435

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           K++H    K GF +  V+V S+L ++Y KC  +E S  VF   P   + C NS++     
Sbjct: 436 KEVHAASQKFGF-YDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSI 494

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFE 449
           +   +DA+  F  M   G    E + +T      VS+ A L S    +  H   +K GF 
Sbjct: 495 NSLGQDALSFFKKMRQLGFFPSEFSFATV-----VSSCAKLSSLFQGQQFHAQIVKDGFL 549

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            +I V  SL++ Y +CG +  +   F+ +P  N V +  +++GY++NG G  AL +   M
Sbjct: 550 DDIFVGSSLIEMYCKCGDVNGARCFFDVMPGRNTVTWNEMIHGYAQNGDGHNALCLYNDM 609

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
           I  G  PD +T++ VL  C+HS +V EG  +FN+M   YG+     HY+C+ID L RAG 
Sbjct: 610 ISSGEKPDDITYVAVLTACSHSALVDEGLEIFNAMLQKYGVVPKVAHYTCIIDCLSRAGR 669

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
            ++ E +L   P   D ++W  +L SCR+H N  + +R A  L  L+P + A Y  ++N 
Sbjct: 670 FNEVEVILDAMPCKDDAVVWEVVLSSCRIHANLSLAKRAAEELYRLDPQNSASYVLLANM 729

Query: 630 YSEIGEFEVSMQIRETALARKLTRDIGHS 658
           YS +G+++ +  +R+     ++ +D G+S
Sbjct: 730 YSSLGKWDDAHVVRDLMSHNQVRKDPGYS 758



 Score =  209 bits (531), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 153/575 (26%), Positives = 278/575 (48%), Gaps = 57/575 (9%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  NI+S N  +  + K+ +L  A +LF +MP R+ V+ N LIS   +  + +QAL  YD
Sbjct: 68  PHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQALDTYD 127

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            ++  G+  S  TF++V S C +      G + H  V+ +G   N+Y+ + L+ +Y + G
Sbjct: 128 SVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLESNIYVVNALLCMYAKCG 187

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
            +  AL +F ++PE N  T+  M+    + ++  E   ++  M  +G+  + +S   M+ 
Sbjct: 188 LNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSVSLSSMLG 247

Query: 220 GCSIG----------MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
            C+ G              +GKQ+H+  +KLG+ + ++ + N+L+D Y+  G +  A+K 
Sbjct: 248 VCAKGERDVGPCHGISTNAQGKQMHTLSVKLGF-ERDLHLCNSLLDMYAKIGDMDSAEKV 306

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           F  +    V+SWN +++ Y +      A E   RMQ     P   +++  L    ++G+V
Sbjct: 307 FVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTACVKSGDV 366

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
             G+QI                                    F+  P  SL   N++++ 
Sbjct: 367 RTGRQI------------------------------------FDCMPCPSLTSWNAILSG 390

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKS 446
              + + ++AVE+F  M  +    D  TL+  L     S+ A LG   + + +H  + K 
Sbjct: 391 YNQNADHREAVELFRKMQFQCQHPDRTTLAVIL-----SSCAELGFLEAGKEVHAASQKF 445

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           GF  ++ V+ SL++ YS+CG +ELS  VF K+P  +VVC+ S++ G+S N +G++AL   
Sbjct: 446 GFYDDVYVASSLINVYSKCGKMELSKHVFSKLPELDVVCWNSMLAGFSINSLGQDALSFF 505

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
           + M Q G  P + +F  V++ C     + +GQ  F++     G   D    S +I+M  +
Sbjct: 506 KKMRQLGFFPSEFSFATVVSSCAKLSSLFQGQQ-FHAQIVKDGFLDDIFVGSSLIEMYCK 564

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            G ++ A       P G + + W+ ++     +G+
Sbjct: 565 CGDVNGARCFFDVMP-GRNTVTWNEMIHGYAQNGD 598



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 120/478 (25%), Positives = 215/478 (44%), Gaps = 50/478 (10%)

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
           +   L+   +V+ C        GK +H+ + +L     + F++N  ++ YS C  +  A 
Sbjct: 3   KSKSLNLANLVQHCITNKAHLSGKVVHARLFRLALFS-DTFLSNHFIELYSKCDHIASAC 61

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-------------QLCR---KRP 311
             FD IP  ++ SWN+I++ Y     +  A  LF +M              + R   +R 
Sbjct: 62  HVFDNIPHKNIFSWNAILAAYCKARNLQYACRLFLQMPQRNTVSLNTLISTMVRCGYERQ 121

Query: 312 S------------IRSFVEFLNFASRTGNVY---FGKQIHGYVTKLGFDHGSVHVQSALT 356
           +            I S + F    S  G++     G++ HG V K+G +  +++V +AL 
Sbjct: 122 ALDTYDSVMLDGVIPSHITFATVFSACGSLLDADCGRRTHGVVIKVGLE-SNIYVVNALL 180

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY KC +   ++ VF   P  +     ++M  L  +  IK+A E+F  M+ +GI +D V
Sbjct: 181 CMYAKCGLNADALRVFRDIPEPNEVTFTTMMGGLAQTNQIKEAAELFRLMLRKGIRVDSV 240

Query: 417 TLSTTLKALSVSASANLGSC---------RLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           +LS+ L  +      ++G C         + +H  ++K GFE ++ +  SL+D Y++ G 
Sbjct: 241 SLSSML-GVCAKGERDVGPCHGISTNAQGKQMHTLSVKLGFERDLHLCNSLLDMYAKIGD 299

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           ++ + +VF  +   +VV +  ++ GY       +A + L+ M   G  PD VT++ +L  
Sbjct: 300 MDSAEKVFVNLNRHSVVSWNIMIAGYGNRCNSEKAAEYLQRMQSDGYEPDDVTYINMLTA 359

Query: 528 CNHSGMVKEGQLVFNSM--KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           C  SG V+ G+ +F+ M   S+   +A    Y+   D      +  K +   Q      D
Sbjct: 360 CVKSGDVRTGRQIFDCMPCPSLTSWNAILSGYNQNADHREAVELFRKMQFQCQHP----D 415

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGEFEVSMQI 642
               + +L SC   G    G+ V     +     D  V S + N YS+ G+ E+S  +
Sbjct: 416 RTTLAVILSSCAELGFLEAGKEVHAASQKFGFYDDVYVASSLINVYSKCGKMELSKHV 473


>gi|225441187|ref|XP_002266244.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Vitis vinifera]
          Length = 722

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 181/577 (31%), Positives = 299/577 (51%), Gaps = 43/577 (7%)

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD----LFDELPERNLATWNL 181
           + +G+QIH + +  G    ++  S L+  +  +G S   LD    LF ++   NL  WN 
Sbjct: 22  FKQGLQIHAQTIVNGLHHQIFSISRLISFFSLLG-SKDGLDHSRLLFSQIDCPNLFMWNT 80

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEP-NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
           M+R +     P E + +Y  M A+G+ P N  +F +++  C+    L+ G ++HSH+IK 
Sbjct: 81  MIRGYSRSDNPREAIVLYMSMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKH 140

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G+ + ++FV NAL+  YS  G+L  A+  FD   V D++S+N+++  YA+ +    AL L
Sbjct: 141 GF-ESDLFVRNALIHLYSVFGNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCL 199

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFDHGSVHVQSALTDMY 359
           F  MQ     P   +FV   +  S       GKQIH  V K L     ++ ++SA+ DMY
Sbjct: 200 FGEMQNSGILPDEFTFVALFSVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMY 259

Query: 360 GKCNVIESSVAVF------ESAPGRSLECC--------------------------NSLM 387
            KC +I  +  VF      +SA   S   C                           +++
Sbjct: 260 AKCGLINIAERVFSTMGTSKSAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMI 319

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           +    +G   +A+E+F  M   GI  DEVTL   L A +   + +LG  RL H       
Sbjct: 320 SGYSQAGQCSEALELFKEMEALGIKPDEVTLVAVLSACARLGAFDLGK-RLYHQYIENGV 378

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDM 505
           F  N  ++ ++MD Y++CG I+ + ++F ++         F S++ G +++G+G  A+ +
Sbjct: 379 FNQNTILTAAVMDMYAKCGSIDSALEIFRRVGKNMKTGFVFNSMIAGLAQHGLGETAITV 438

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              +I  GL PD+VTF+ VL  C HSG+++EG+ +F SM + YGI    +HY CM+D+LG
Sbjct: 439 FRELISTGLKPDEVTFVGVLCACGHSGLIEEGKKLFESMFNAYGIKPQMEHYGCMVDLLG 498

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           R G L++A +L+Q+ P   + ++W +LL +CR HGN  IG      L+E+E    A Y  
Sbjct: 499 RYGCLEEAYDLVQKMPFEANSVIWRALLSACRTHGNVKIGEIAGQKLLEMEAQHGARYVL 558

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           +SN  ++  ++E + Q+R+      + +  G S IE+
Sbjct: 559 LSNILADANQWEEARQVRKVMEDHGIRKPPGWSYIEL 595



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 128/497 (25%), Positives = 242/497 (48%), Gaps = 45/497 (9%)

Query: 43  NIYSSNRTIDDFVKSGH---LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
            I+S +R I  F   G    L+ ++ LF ++   ++  +N +I G  +  +P++A+ LY 
Sbjct: 40  QIFSISRLISFFSLLGSKDGLDHSRLLFSQIDCPNLFMWNTMIRGYSRSDNPREAIVLYM 99

Query: 100 EMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            M++ GI    + TF  +L+ C+       G ++H  ++  GF  +L++ + L+ LY   
Sbjct: 100 SMIAKGIAPPNNFTFPFLLNSCARLSSLEPGHEVHSHIIKHGFESDLFVRNALIHLYSVF 159

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LFDE   R+L ++N M++ + E+++P+  L ++ +M+  G+ P+  +F  + 
Sbjct: 160 GNLNLARTLFDESLVRDLVSYNTMIKGYAEVNQPESALCLFGEMQNSGILPDEFTFVALF 219

Query: 219 RGCSIGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSA------------------ 259
             CS+    + GKQ+H+ V K L  +D NI + +A+VD Y+                   
Sbjct: 220 SVCSVLNEPNVGKQIHAQVYKNLRSIDSNILLKSAIVDMYAKCGLINIAERVFSTMGTSK 279

Query: 260 --------------CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
                         CG +  A+K F+ +   DVISW +++S Y+      +ALELF  M+
Sbjct: 280 SAAAWSSMVCGYARCGEINVARKLFNHMHERDVISWTAMISGYSQAGQCSEALELFKEME 339

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQI-HGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
               +P   + V  L+  +R G    GK++ H Y+    F+  ++ + +A+ DMY KC  
Sbjct: 340 ALGIKPDEVTLVAVLSACARLGAFDLGKRLYHQYIENGVFNQNTI-LTAAVMDMYAKCGS 398

Query: 365 IESSVAVFESAPGRSLEC---CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           I+S++ +F    G++++     NS++  L   G  + A+ +F  ++  G+  DEVT    
Sbjct: 399 IDSALEIFRRV-GKNMKTGFVFNSMIAGLAQHGLGETAITVFRELISTGLKPDEVTFVGV 457

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-S 480
           L A   S     G  +L        G +  +     ++D   R G +E ++ + +K+P  
Sbjct: 458 LCACGHSGLIEEGK-KLFESMFNAYGIKPQMEHYGCMVDLLGRYGCLEEAYDLVQKMPFE 516

Query: 481 PNVVCFTSIMNGYSRNG 497
            N V + ++++    +G
Sbjct: 517 ANSVIWRALLSACRTHG 533


>gi|358343602|ref|XP_003635889.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|358344096|ref|XP_003636129.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355501824|gb|AES83027.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355502064|gb|AES83267.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 662

 Score =  283 bits (725), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 161/551 (29%), Positives = 297/551 (53%), Gaps = 5/551 (0%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           ++S+++ C+N    T    +H  +L  G  L  + G  L+D Y++      A  LFDE+P
Sbjct: 4   YTSLIAQCTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            R++ TWN M+ +     +  E + +Y+ M  EGV P+  +F  + +  S   +  EG++
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            H   + LG+   + FVA  +VD Y+  G + +A+  FD +   DV+ + +++  Y  + 
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHG 182

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L  +ALE+F  M   R +P+  +    L      G++  GK IHG V K G +   V  Q
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLE-SVVASQ 241

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           ++L  MY KCN++E S+ VF S    S     S +  L+ +G  + A+ MF  M+   I 
Sbjct: 242 TSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSIS 301

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            +  TLS+ L A   S+ A L +   +H   +K G + N  V  +L+  Y +CG++E + 
Sbjct: 302 PNHFTLSSILHA--CSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKAR 359

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF+ +   ++V   +++  Y++NG G EAL++ E + + GL P+ VTF+ +L  CN++G
Sbjct: 360 SVFDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAG 419

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +V+EG  +F+ +++ + I+  R HY+CMID+LGRA   ++A  L+++     D + W +L
Sbjct: 420 LVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGK-NPDVIQWRTL 478

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L +C++HG   +  +    +++  P D   +  ++N Y+  G+++  ++++      +L 
Sbjct: 479 LNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLK 538

Query: 653 RDIGHSLIEVN 663
           +    S ++++
Sbjct: 539 KTPAMSWVDID 549



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 125/508 (24%), Positives = 242/508 (47%), Gaps = 18/508 (3%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR 73
           T+L   CT+   L++   L ++   +  L  +  ++ ID ++K   +  A+KLFDEMP R
Sbjct: 5   TSLIAQCTNKKSLTTLKSLHTHILKSGSLFSFFGHKLIDGYIKCSVITEARKLFDEMPNR 64

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
            +VT+N +IS        K+A+ LY  M+  G+   A TFS++    S  G   EG + H
Sbjct: 65  HIVTWNSMISSHVSRGKTKEAIELYSNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAH 124

Query: 134 CRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
              + LGF + + ++ + +VD+Y + G    A  +FD + ++++  +  ++  + +    
Sbjct: 125 GLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQHGLD 184

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
            E L ++  M    ++PN  +   ++  C ++G L++ GK +H  V+K G   V +    
Sbjct: 185 GEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVN-GKLIHGLVVKYGLESV-VASQT 242

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           +L+  YS C  + ++ K F+ +     ++W S +           AL +F  M  C   P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISP 302

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
           +  +    L+  S    +  G+QIH    KLG D G+  V +AL  +YGKC  +E + +V
Sbjct: 303 NHFTLSSILHACSSLAMLEAGEQIHAVTVKLGVD-GNKFVDAALIHLYGKCGNVEKARSV 361

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F+S     +   N+++ +   +G   +A+E+F  +   G+  + VT  + L A + +   
Sbjct: 362 FDSLTELDIVSINTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLV 421

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCS------LMDAYSRCGHIELSHQVFEKIPSPNVVC 485
             G       C I S   +N ++  +      ++D   R    E +  + E+  +P+V+ 
Sbjct: 422 EEG-------CQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDVIQ 474

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRG 513
           + +++N    +G    A   ++ M+ + 
Sbjct: 475 WRTLLNACKIHGEVEMAEKFMKKMLDQA 502



 Score = 93.2 bits (230), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 65/287 (22%), Positives = 135/287 (47%), Gaps = 1/287 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTI-DDFVKSGH 59
           M+ +++ P   T+ ++  +C ++  L +  L+          ++ +S  ++   + K   
Sbjct: 194 MVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKYGLESVVASQTSLLTMYSKCNM 253

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  + K+F+ +     VT+   I G  +    + AL ++ EM+   I  +  T SS+L  
Sbjct: 254 VEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEVALSMFREMMRCSISPNHFTLSSILHA 313

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS+      G QIH   + LG   N ++ + L+ LY + G   +A  +FD L E ++ + 
Sbjct: 314 CSSLAMLEAGEQIHAVTVKLGVDGNKFVDAALIHLYGKCGNVEKARSVFDSLTELDIVSI 373

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+ A+ +     E L ++ ++K  G+EPN ++F  ++  C+   L++EG Q+ S +  
Sbjct: 374 NTMIYAYAQNGFGHEALELFERLKKLGLEPNVVTFISILLACNNAGLVEEGCQIFSLIRN 433

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
              +++       ++D         EA    +     DVI W ++++
Sbjct: 434 NHSIELTRDHYTCMIDLLGRAKRFEEATMLIEEGKNPDVIQWRTLLN 480


>gi|147866113|emb|CAN78822.1| hypothetical protein VITISV_006669 [Vitis vinifera]
          Length = 599

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 154/506 (30%), Positives = 287/506 (56%), Gaps = 21/506 (4%)

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           N  +WN+ +R F +   P E + +Y + ++ +G +P+  ++  + + C+   L+  G ++
Sbjct: 42  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 101

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
             HV+ LG+ D +IFV+NA++    +CG L  A+K FD   V D++SWNS+++ Y     
Sbjct: 102 LGHVLHLGF-DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGW 160

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
            ++AL  +  M++   +P   + +  ++  ++  ++  G++ H Y+ + G    +V + +
Sbjct: 161 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL-TVPLAN 219

Query: 354 ALTDMYGKCNVIESSVAVFESA----------------PGRSLECCNSLMTSLLHSGNIK 397
           AL DMY KC  +ES+  +F+S                 P + +   N+++   +H+   K
Sbjct: 220 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGK 279

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+ +F  M    I  DEVT+ + L A S   + ++G    +H    K     N+A+  +
Sbjct: 280 EALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI--WIHHYIEKHELSLNVALGTA 337

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++CG I  + QVF+++P  N + +T+I++G + +G    A+     MI   ++PD
Sbjct: 338 LIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPD 397

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           +VTFL +L+ C H G+V+EG+  F+ M S + +    +HYSCM+D+LGRAG+L++AEEL+
Sbjct: 398 EVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELI 457

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           +  P   D ++W +L  +CR+HGN ++G R A+ L++++P D  +Y  ++N Y E   ++
Sbjct: 458 KSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGIYVLLANMYGEAEMWK 517

Query: 638 VSMQIRETALARKLTRDIGHSLIEVN 663
            + + R+    R + +  G S IEVN
Sbjct: 518 EAGKXRKLMRQRGVEKTPGCSSIEVN 543



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/420 (26%), Positives = 196/420 (46%), Gaps = 20/420 (4%)

Query: 77  TYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
           ++N+ I G     +P++A+ LY  ++   G K    T+  +   C+       G +I   
Sbjct: 45  SWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGH 104

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
           VL LGF  ++++ + ++ L +  G    A  +FD+   R+L +WN M+  +       E 
Sbjct: 105 VLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEA 164

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L  Y +MK EG++P+ ++   +V  C+    LD G++ H ++ + G + + + +ANAL+D
Sbjct: 165 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENG-LKLTVPLANALMD 223

Query: 256 FYSACGSLIEAKKSFDF----------------IPVDDVISWNSIVSIYADYDLIFDALE 299
            Y  CG+L  A+K FD                 +P  DV+ WN+++  Y   +   +AL 
Sbjct: 224 MYMKCGNLESARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALA 283

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  MQ     P   + V  L+  S+ G +  G  IH Y+ K      +V + +AL DMY
Sbjct: 284 LFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSL-NVALGTALIDMY 342

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  I  ++ VF+  PGR+     ++++ L   GN   A+  F  M+D  +  DEVT  
Sbjct: 343 AKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFL 402

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A         G  +     + K      +     ++D   R G +E + ++ + +P
Sbjct: 403 GLLSACCHGGLVEEGR-KYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 461



 Score =  141 bits (356), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 169/350 (48%), Gaps = 17/350 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I+ SN  I   V  G L+ A+K+FD+   RD+V++N +I+G  +     +AL  Y EM 
Sbjct: 113 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 172

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG--P 160
             GIK    T   V+S C+       G + HC +   G  L + + + L+D+YM+ G   
Sbjct: 173 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLE 232

Query: 161 SVRAL--------------DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
           S R L               LFDE+P++++  WN M+  +   +R  E L ++N+M+A  
Sbjct: 233 SARKLFDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMN 292

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           + P+ ++    +  CS    LD G  +H H I+   + +N+ +  AL+D Y+ CG + +A
Sbjct: 293 INPDEVTMVSCLSACSQLGALDVGIWIH-HYIEKHELSLNVALGTALIDMYAKCGKITKA 351

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
            + F  +P  + ++W +I+S  A +     A+  F  M      P   +F+  L+     
Sbjct: 352 IQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHG 411

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           G V  G++    ++        +   S + D+ G+  ++E +  + +S P
Sbjct: 412 GLVEEGRKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMP 461



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 79/295 (26%), Positives = 138/295 (46%), Gaps = 18/295 (6%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  +  +C  +  L        Y + N  +L +  +N  +D ++K G+L SA+KL
Sbjct: 178 PDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLESARKL 237

Query: 67  FD----------------EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           FD                EMP +D+V +N +I G       K+AL L++EM +  I    
Sbjct: 238 FDSMTNKTMVSWTTMLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDE 297

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T  S LS CS  G    GI IH  +      LN+ +G+ L+D+Y + G   +A+ +F E
Sbjct: 298 VTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQE 357

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           LP RN  TW  ++            +  +++M    V P+ ++F  ++  C  G L++EG
Sbjct: 358 LPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEG 417

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSI 284
           ++  S +     +   +   + +VD     G L EA++    +P++ D + W ++
Sbjct: 418 RKYFSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 472


>gi|222629201|gb|EEE61333.1| hypothetical protein OsJ_15451 [Oryza sativa Japonica Group]
          Length = 1037

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/625 (27%), Positives = 331/625 (52%), Gaps = 7/625 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  +  I+ + K G  + AK +FD    +++V +N +++G  +   P++A+ ++  M+
Sbjct: 369 NVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMM 428

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            + ++    TF S+L  C+    +  G Q+HC  +     ++L++ +  +D+Y + G   
Sbjct: 429 RYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIG 488

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  +P ++  +WN +     +    +E + M  +M+  G+ P+ +SF   +  CS
Sbjct: 489 DAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACS 548

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                + GKQ+H   IK G +  N  V ++L+D YS  G +  ++K F  +    ++  N
Sbjct: 549 NIRATETGKQIHCLAIKYG-ICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPIN 607

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ +   +   +A++LF ++     +PS  +F   L+  S + N   GKQ+H Y  K 
Sbjct: 608 ALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKS 667

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVE 401
           G  +    +  +L  +Y K  ++E +  +    P  ++L    ++++    +G    ++ 
Sbjct: 668 GVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLV 727

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALS-VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            F  M    +  DE T ++ LKA S V+A A+    + +H    KSGF S    + +L+D
Sbjct: 728 SFWRMRHCNVRSDEATFASVLKACSDVTAFAD---GKEIHGLITKSGFGSYETATSALID 784

Query: 461 AYSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            YS+CG +  S + F+++ +  +++ + S++ G+++NG   EAL + + M +  + PD+V
Sbjct: 785 MYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEV 844

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TFL VL  C HSG++ EG+  F SM+ VYG+     HY+C ID+LGR G L +A+E + Q
Sbjct: 845 TFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQ 904

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D ++W++ L +CR+H +E  G+  A  L+ELEP   + Y  +S+ ++  G +  +
Sbjct: 905 LPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEA 964

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
              RE+   + + +  G S I V +
Sbjct: 965 KVTRESMREKGVAKFPGCSWITVGN 989



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/547 (29%), Positives = 274/547 (50%), Gaps = 11/547 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I     SG L+ A  L  +MP    V +N +ISG  +       L LY +M S G+  + 
Sbjct: 276 ISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTR 335

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           STF+S+LS  +N   + EG Q+H   +  G   N+++GS L++LY + G    A ++FD 
Sbjct: 336 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 395

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
             E+N+  WN ML  F +   P+E +RM+  M    ++ +  +F  ++  C+       G
Sbjct: 396 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 455

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+H   IK   +D+++FVANA +D YS  G++ +AK  F  IP  D ISWN++    A 
Sbjct: 456 KQVHCVTIK-NCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 514

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF--DHGS 348
                +A+ +  RM+L    P   SF   +N  S       GKQIH    K G   +H  
Sbjct: 515 NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHA- 573

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             V S+L D+Y K   +ESS  +F      S+   N+L+   + + N  +A+++F  ++ 
Sbjct: 574 --VGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLK 631

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGH 467
           +G+    VT S+ L   S S ++ +G  + +HC  +KSG    +  +  SL   Y +   
Sbjct: 632 DGLKPSSVTFSSILSGCSGSLNSAIG--KQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKM 689

Query: 468 IELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +E ++++  ++P   N+  +T+I++GY++NG G  +L     M    +  D+ TF  VL 
Sbjct: 690 LEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLK 749

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+      +G+ + + + +  G  +     S +IDM  + G +  + E  ++     D 
Sbjct: 750 ACSDVTAFADGKEI-HGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDI 808

Query: 587 MMWSSLL 593
           M W+S++
Sbjct: 809 MPWNSMI 815



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 220/458 (48%), Gaps = 17/458 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++++ +N T+D + K G +  AK LF  +P +D +++N L  G  +    ++A+ +   M
Sbjct: 469 ISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRM 528

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             HGI     +FS+ ++ CSN      G QIHC  +  G   N  +GS L+DLY + G  
Sbjct: 529 RLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDV 588

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +  +F ++   ++   N ++  F + +  DE ++++ ++  +G++P+ ++F  ++ GC
Sbjct: 589 ESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGC 648

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVIS 280
           S  +    GKQ+H + +K G +  +  +  +L   Y     L +A K    +P   ++  
Sbjct: 649 SGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFE 708

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +I+S YA       +L  F+RM+ C  R    +F   L   S       GK+IHG +T
Sbjct: 709 WTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLIT 768

Query: 341 KLGFDHGSVHV-QSALTDMYGKCNVIESSVAVFESAPGRS-LECCNSLMTSLLHSGNIKD 398
           K GF  GS     SAL DMY KC  + SS   F+    +  +   NS++     +G   +
Sbjct: 769 KSGF--GSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADE 826

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN-----LGSCRLLHCCAIKSGFESNIA 453
           A+ +F  M +  I  DEVT    L A + S   +      GS R ++      G    + 
Sbjct: 827 ALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVY------GLTPRLD 880

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
                +D   R GH++ + +  +++P  P+ V + + +
Sbjct: 881 HYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYL 918



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 220/464 (47%), Gaps = 40/464 (8%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           VLS CS  G    G Q+HC V+  GF  +++  + LVD+Y + G    A  +FD +   +
Sbjct: 174 VLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPD 233

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
              W+ M+  +  +    E L ++++M   G  P+ ++   +     I  L   G+  H 
Sbjct: 234 TICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTI-----ISTLASSGRLDH- 287

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
                         A AL+            KK    +P    ++WN+++S +A   L F
Sbjct: 288 --------------ATALL------------KK----MPTPSTVAWNAVISGHAQSGLEF 317

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           + L L+  M+     P+  +F   L+ A+       G+Q+H      G D  +V V S+L
Sbjct: 318 NVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLD-ANVFVGSSL 376

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            ++Y KC     +  VF+ +  +++   N+++T  + +   ++A+ MF +M+   +  DE
Sbjct: 377 INLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDE 436

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T  + L A +  +S  LG  + +HC  IK+  + ++ V+ + +D YS+ G I  +  +F
Sbjct: 437 FTFVSILGACTYLSSFYLG--KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALF 494

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
             IP  + + + ++  G ++N    EA+ ML+ M   G+ PD V+F   +  C++    +
Sbjct: 495 SLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 554

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            G+ + + +   YGI ++    S +ID+  + G ++ + ++  Q
Sbjct: 555 TGKQI-HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQ 597



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 130/558 (23%), Positives = 235/558 (42%), Gaps = 83/558 (14%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H R+L  G  L   +G  LV+LY + G    A        ER     + +L        
Sbjct: 88  LHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGS 147

Query: 192 PDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           P +VL  +  ++   G  P+      ++  CS   +L  G+Q+H  V+K G+   ++F  
Sbjct: 148 PGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSS-SVFCE 206

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALVD Y+ CG +  A++ FD I   D I W+S+++ Y       +AL LF RM      
Sbjct: 207 AALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSA 266

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + V  ++  + +G +               DH +                     A
Sbjct: 267 PDQVTLVTIISTLASSGRL---------------DHAT---------------------A 290

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           + +  P  S    N++++    SG   + + ++  M   G+     T ++ L     SA+
Sbjct: 291 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASML-----SAA 345

Query: 431 ANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           AN+ +    + +H  A+  G ++N+ V  SL++ Y++CG    +  VF+     N+V + 
Sbjct: 346 ANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWN 405

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKS 546
           +++ G+ +N +  EA+ M + M++  L  D+ TF+ +L  C +      G+ V   ++K+
Sbjct: 406 AMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKN 465

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL-------------- 592
              +D      +  +DM  + G +  A+ L    P   D + W++L              
Sbjct: 466 C--MDISLFVANATLDMYSKYGAIGDAKALFSLIP-YKDSISWNALTVGLAQNLEEEEAV 522

Query: 593 --LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
             L+  R+HG              + P D + +S   N  S I   E   QI   A+   
Sbjct: 523 CMLKRMRLHG--------------ITPDDVS-FSTAINACSNIRATETGKQIHCLAIKYG 567

Query: 651 LTRD--IGHSLIEVNSCH 666
           +  +  +G SLI++ S H
Sbjct: 568 ICSNHAVGSSLIDLYSKH 585


>gi|6723387|emb|CAB66396.1| putative protein [Arabidopsis thaliana]
          Length = 1113

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 184/628 (29%), Positives = 325/628 (51%), Gaps = 22/628 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           N  I  + KSG    A+ +F+ M     RD+V+++ +++  G       A+ ++ E +  
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVR 163
           G+  +   +++V+  CSN+ F   G      ++  G F  ++ +G  L+D++++   S  
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFE 220

Query: 164 -ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD++ E N+ TW LM+    ++  P E +R +  M   G E +  +   +   C+
Sbjct: 221 NAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA 280

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVI 279
               L  GKQLHS  I+ G VD    V  +LVD Y+ C   GS+ + +K FD +    V+
Sbjct: 281 ELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVM 337

Query: 280 SWNSIVSIY-ADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           SW ++++ Y  + +L  +A+ LF  M       P+  +F           +   GKQ+ G
Sbjct: 338 SWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLG 397

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
              K G    S  V +++  M+ K + +E +   FES   ++L   N+ +     + N +
Sbjct: 398 QAFKRGLASNS-SVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE 456

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAV 454
            A ++   + +  +G+   T ++ L     S  AN+GS R    +H   +K G   N  V
Sbjct: 457 QAFKLLSEITERELGVSAFTFASLL-----SGVANVGSIRKGEQIHSQVVKLGLSCNQPV 511

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+  YS+CG I+ + +VF  + + NV+ +TS++ G++++G     L+    MI+ G+
Sbjct: 512 CNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGV 571

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P++VT++ +L+ C+H G+V EG   FNSM   + I    +HY+CM+D+L RAG+L  A 
Sbjct: 572 KPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAF 631

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E +   P   D ++W + L +CRVH N  +G+  A  ++EL+P + A Y Q+SN Y+  G
Sbjct: 632 EFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAG 691

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEV 662
           ++E S ++R     R L ++ G S IEV
Sbjct: 692 KWEESTEMRRKMKERNLVKEGGCSWIEV 719



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/533 (22%), Positives = 245/533 (45%), Gaps = 17/533 (3%)

Query: 92  KQALYLYDEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           + A+   D M   GI+   S TFSS+L  C  A  +  G  +H R++      +  + + 
Sbjct: 43  RGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102

Query: 151 LVDLYMRMGPSVRALDLFDELP---ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
           L+ LY + G S +A D+F+ +    +R++ +W+ M+  +    R  + ++++ +    G+
Sbjct: 103 LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD-FYSACGSLIEA 266
            PN   +  ++R CS    +  G+     ++K G  + ++ V  +L+D F     S   A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
            K FD +   +V++W  +++         +A+  F  M L        +     +  +  
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV---IESSVAVFESAPGRSLECC 383
            N+  GKQ+H +  + G       V+ +L DMY KC+    ++    VF+     S+   
Sbjct: 283 ENLSLGKQLHSWAIRSGLVD---DVECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSW 339

Query: 384 NSLMTSLLHSGNI-KDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
            +L+T  + + N+  +A+ +F  M+ +G +  +  T S+  KA    +   +G   L   
Sbjct: 340 TALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ- 398

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
            A K G  SN +V+ S++  + +   +E + + FE +   N+V + + ++G  RN    +
Sbjct: 399 -AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQ 457

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A  +L  + +R L     TF  +L+G  + G +++G+ + + +  + G+  ++   + +I
Sbjct: 458 AFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKL-GLSCNQPVCNALI 516

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
            M  + G +D A  +        + + W+S++     HG  I      N ++E
Sbjct: 517 SMYSKCGSIDTASRVFNFME-NRNVISWTSMITGFAKHGFAIRVLETFNQMIE 568



 Score =  107 bits (268), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 123/240 (51%), Gaps = 1/240 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  FVKS  +  A++ F+ +  +++V+YN  + G  +  + +QA  L  E+    +
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL 470

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             SA TF+S+LS  +N G   +G QIH +V+ LG   N  + + L+ +Y + G    A  
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F+ +  RN+ +W  M+  F +      VL  +N+M  EGV+PN +++  ++  CS   L
Sbjct: 531 VFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL 590

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
           + EG +  + + +   +   +     +VD     G L +A +  + +P   DV+ W + +
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650


>gi|302142721|emb|CBI19924.3| unnamed protein product [Vitis vinifera]
          Length = 912

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 188/630 (29%), Positives = 318/630 (50%), Gaps = 46/630 (7%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P   I+  NR I+ + K   L+ A++LF+EMP RD  ++N +I+   +    ++AL+L+
Sbjct: 90  SPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLF 149

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M   GI  +  TF+SVL  C+         QIH  ++  GF  N+ +GS LVD+Y + 
Sbjct: 150 SRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKC 209

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A  +FDE+   N  +WN+++R + E+    E + M+ KM    + P   +F   +
Sbjct: 210 RVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNAL 269

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL--------------- 263
             CS    L EG Q+H   I++G+ D +  V+++L+D Y+ CG L               
Sbjct: 270 IACSSISALQEGIQIHGVAIRIGY-DEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNL 328

Query: 264 ----------------IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
                            EA+  FD +P   VISWN++++ Y  +    +ALE  F M+  
Sbjct: 329 ISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKA 388

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC-NVIE 366
            +     +    LN  +   +V  GKQ+HG++ + G  + ++ V +AL  MYGKC N+  
Sbjct: 389 TQDIDHVTVGLILNVCAGLSDVESGKQVHGFIYRHGL-YSNLFVGNALLHMYGKCGNLRS 447

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           + +  ++ +  R     N+L+TS    G  ++A+ +FG M  E     + TL T L    
Sbjct: 448 TRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEMQWETTP-SKFTLGTLL---- 502

Query: 427 VSASAN---LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
            SA AN   L   + +H   I++G+E ++    +L+D YS+C  +E + +VF++ PS ++
Sbjct: 503 -SACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAPSRDL 561

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           + + S++ G   NG GR+ L +  +M + G+ PD +TF  +L GC   G+   G   FNS
Sbjct: 562 ILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAGLGTEYFNS 621

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M + Y I    +HY  MI++ GR G +D+ E+ +++ P      M + +  +C  HG+  
Sbjct: 622 MSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVAMLTRVFNACSEHGHSR 681

Query: 604 IGRRVANILMELE---PVDFAVYSQVSNFY 630
           +G+  A  L EL    P  F +  +  N Y
Sbjct: 682 LGKWAAEQLNELNPSTPFHFQILDRSRNLY 711



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/543 (23%), Positives = 259/543 (47%), Gaps = 46/543 (8%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           S ++ +  +CS+     E  ++   +++      +++ +  ++ Y +      A +LF+E
Sbjct: 61  SLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEE 120

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P+R+  +WN M+ A+ +    ++ L ++++M   G+  N ++F  ++  C+  + L   
Sbjct: 121 MPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLS 180

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+H  ++K G+   N+ + ++LVD Y  C  + +A++ FD I   + ISWN IV  Y +
Sbjct: 181 KQIHGLIVKYGFC-WNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLE 239

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +A+ +FF+M     RP   +F   L   S    +  G QIHG   ++G+D   V 
Sbjct: 240 MGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEV- 298

Query: 351 VQSALTDMYGKCNVIESSVAVFE-------------------------------SAPGRS 379
           V S+L DMY KC  +ES+  +FE                                 P RS
Sbjct: 299 VSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERS 358

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   N+++    H    ++A+E    M      +D VT+   L     +  +++ S + +
Sbjct: 359 VISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNV--CAGLSDVESGKQV 416

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGM 498
           H    + G  SN+ V  +L+  Y +CG++  +   F ++    + + + +++  ++R+G+
Sbjct: 417 HGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGL 476

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQHY 557
             EA+ +   M Q    P K T   +L+ C +   +++G+ +   M ++ Y ID   +  
Sbjct: 477 SEEAMTIFGEM-QWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVAR-- 533

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI--LMEL 615
             ++DM  +   L+ A ++ ++ P   D ++W+S++  C  +G    GR V  +  LME 
Sbjct: 534 GALVDMYSKCRCLEYALKVFKEAP-SRDLILWNSMILGCCHNGR---GRDVLGLFGLMEE 589

Query: 616 EPV 618
           E V
Sbjct: 590 EGV 592


>gi|242064134|ref|XP_002453356.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
 gi|241933187|gb|EES06332.1| hypothetical protein SORBIDRAFT_04g004500 [Sorghum bicolor]
          Length = 807

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 187/670 (27%), Positives = 324/670 (48%), Gaps = 50/670 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   L P   T+ ++   C ++  L           +     N +  N  +  + K G 
Sbjct: 133 MLQEGLAPTNFTLASVLSACGAVAALDDGRRCHGLAVKVGLDGNQFVENGLLGMYTKCGS 192

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A +LFD M + + V++  ++ G  +      AL L+  M    I+      SSVL  
Sbjct: 193 VADAVRLFDWMSSPNEVSFTAMMGGLAQSGAVDDALRLFARMSRSAIRVDPVAVSSVLGA 252

Query: 120 CSNA--GFY--TEGIQ----IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           C+ A  G Y     I+    IH  V+  GF  + ++G+ L+D+Y +      A+ +F+ +
Sbjct: 253 CAQACAGDYNVARAIRLAQSIHALVVRKGFDSDQHVGNSLIDMYAKGMKMDEAMKVFESM 312

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
              ++ +WN+++  + +L   +  L + + M+  G EPN +++  M+  C          
Sbjct: 313 SSVSIVSWNILVTGYGQLGCYERALEVLDLMQESGFEPNEVTYSNMLASC---------- 362

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
                 IK                       +  A+  FD I    V +WN+++S Y   
Sbjct: 363 ------IK--------------------ARDVPSARAMFDKISKPSVTTWNTLLSGYGQE 396

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           +L  D +ELF RMQ    +P   +    L+  SR G +  GKQ+H    KL   H  + V
Sbjct: 397 ELHQDTIELFRRMQHQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKL-LLHNDMFV 455

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL-LHSGNIKDAVEMFGFMVDEG 410
            S L DMY KC  +  +  +F     R + C NS+++ L +HS N ++A + F  M + G
Sbjct: 456 ASGLIDMYSKCGQVGIAQIIFNMMTERDVVCWNSMISGLAIHSLN-EEAFDFFKQMRENG 514

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +   E + ++ + + +  +S   G  R +H   +K G++ N+ V  SL+D Y++CG+++ 
Sbjct: 515 MFPTESSYASMINSCARLSSIPQG--RQIHAQVLKDGYDQNVYVGSSLIDMYAKCGNMDD 572

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +   F  +   N+V +  +++GY++NG G +A+++ E M+     PD VTF+ VL GC+H
Sbjct: 573 ARLFFNCMIVKNIVAWNEMIHGYAQNGFGEKAVELFEYMLTTKQKPDSVTFIAVLTGCSH 632

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG+V E    FNSM+S YGI    +HY+C+ID LGRAG   +   ++ + P   D ++W 
Sbjct: 633 SGLVDEAIAYFNSMESNYGIRPLVEHYTCLIDALGRAGRFAEVVAVIDKMPYKDDAILWE 692

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
            LL +C VH N  +G   A  L  L+P + + Y  +SN Y+ +G    +  +R    +R 
Sbjct: 693 VLLAACVVHHNAELGEFAAKHLFRLDPKNPSPYVLLSNIYATLGRHGDASAVRALMSSRG 752

Query: 651 LTRDIGHSLI 660
           + +  G+S +
Sbjct: 753 VVKGRGYSWV 762



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 122/509 (23%), Positives = 220/509 (43%), Gaps = 92/509 (18%)

Query: 136 VLSLGFGLNLYIGSPLVDLYM-------------------------------RMGPSVRA 164
           VL+ G   + ++ + LV+LY                                R G    A
Sbjct: 36  VLAAGLAADTFLLNRLVELYSLSGLPCHALRAFRALPRPNVYSYNAAISAACRAGDLAAA 95

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            DL   +P+RN  +WN ++ A      P E L MY  M  EG+ P   +   ++  C   
Sbjct: 96  RDLLGRMPDRNAVSWNTVIAAVARSDSPGEALEMYRGMLQEGLAPTNFTLASVLSACGAV 155

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             LD+G++ H   +K+G +D N FV N L+  Y+ CGS+ +A + FD++   + +S+ ++
Sbjct: 156 AALDDGRRCHGLAVKVG-LDGNQFVENGLLGMYTKCGSVADAVRLFDWMSSPNEVSFTAM 214

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG--------------NVY 330
           +   A    + DAL LF RM     R +IR  V+ +  +S  G               + 
Sbjct: 215 MGGLAQSGAVDDALRLFARM----SRSAIR--VDPVAVSSVLGACAQACAGDYNVARAIR 268

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
             + IH  V + GFD    HV ++L DMY K   ++ ++ VFES    S+   N L+T  
Sbjct: 269 LAQSIHALVVRKGFDSDQ-HVGNSLIDMYAKGMKMDEAMKVFESMSSVSIVSWNILVTGY 327

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
              G  + A+E+   M + G   +EVT                                S
Sbjct: 328 GQLGCYERALEVLDLMQESGFEPNEVTY-------------------------------S 356

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           N+  SC       +   +  +  +F+KI  P+V  + ++++GY +  + ++ +++   M 
Sbjct: 357 NMLASC------IKARDVPSARAMFDKISKPSVTTWNTLLSGYGQEELHQDTIELFRRMQ 410

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
            + + PD+ T   +L+ C+  G+++ G+ V ++   +  +  D    S +IDM  + G +
Sbjct: 411 HQNVQPDRTTLAVILSTCSRLGILELGKQVHSASVKLL-LHNDMFVASGLIDMYSKCGQV 469

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
             A+ +        D + W+S++    +H
Sbjct: 470 GIAQIIFNMMT-ERDVVCWNSMISGLAIH 497


>gi|255559709|ref|XP_002520874.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540005|gb|EEF41583.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 833

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 176/614 (28%), Positives = 319/614 (51%), Gaps = 7/614 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
           ID + K G    A+ LF ++  R ++V +N++I G G+    + +L  Y    +  +K  
Sbjct: 181 IDTYFKCGRPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVV 240

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           +S+F+  LS C    F + G Q+HC  + +GF  + Y+ + L+ +Y +      A  +F+
Sbjct: 241 SSSFTCTLSACGQGEFVSFGKQVHCDAIKVGFEDDPYVHTSLLTMYGKCQMIESAEKVFN 300

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           E+P++ +  WN ++ A+       + LR+Y +MK   V  +  +   ++   S+  L D 
Sbjct: 301 EVPDKEIELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDL 360

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G+ +H+ ++K   +  +I + +AL+  YS  G    A   F  +   DV++W S++S + 
Sbjct: 361 GRLIHTEIVKRP-LQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFC 419

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                 +AL+ F  M+    +P        ++  +    V  G  IHG+V K G     V
Sbjct: 420 QNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGL-QLDV 478

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD-AVEMFGFMVD 408
            V S+L DMY K    E +  +F   P ++L   NS+++    + N+ D ++ +F  ++ 
Sbjct: 479 FVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRN-NLPDLSINLFSQVLR 537

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
             +  D V+ ++ L A  +S+ A L   + +H   ++     ++ V  +L+D Y +CG +
Sbjct: 538 NDLYPDSVSFTSVLAA--ISSVAALLKGKSVHGYLVRLWIPFDLQVENTLIDMYIKCGLL 595

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           + +  +FE+I   N+V + S++ GY  +G   +A+++ + M   G+ PD VTFL +L+ C
Sbjct: 596 KYAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSC 655

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           NHSG+++EG  +F  MK  +GI+   +HY  ++D+ GRAG L  A   ++  P   D  +
Sbjct: 656 NHSGLIEEGLHLFEMMKMKFGIEPRMEHYVNIVDLYGRAGCLGDAYSFVKNMPVEPDRSI 715

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W SLL SC++H N  +G  VAN L+ +EP   + Y Q+ N Y E   ++ +  +R +   
Sbjct: 716 WLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAELWDRTANLRASMKE 775

Query: 649 RKLTRDIGHSLIEV 662
           + L +  G S IEV
Sbjct: 776 KGLKKTPGCSWIEV 789



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 145/562 (25%), Positives = 268/562 (47%), Gaps = 32/562 (5%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPAR-----DMVTYNLLISGCGKFRHPKQALYLYD 99
           Y ++  I+ +VK G    A K+FD++P       D+  +N +I G  +F   ++ +  + 
Sbjct: 89  YITSSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFG 148

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M S G                    Y EG QIH  ++      + ++ + L+D Y + G
Sbjct: 149 RMQSSG--------------------YKEGKQIHSYIVRNMLNFDPFLETALIDTYFKCG 188

Query: 160 PSVRALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
               A  LF +L +R N+  WN+M+  F E    +  L  Y   K E V+    SF   +
Sbjct: 189 RPTEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTL 248

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C  G  +  GKQ+H   IK+G+ D + +V  +L+  Y  C  +  A+K F+ +P  ++
Sbjct: 249 SACGQGEFVSFGKQVHCDAIKVGFED-DPYVHTSLLTMYGKCQMIESAEKVFNEVPDKEI 307

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
             WN+++S Y      +DAL ++ +M+LC       + +  L  +S  G    G+ IH  
Sbjct: 308 ELWNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLGRLIHTE 367

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + K      S+ +QSAL  MY K      + ++F +   R +    S+++    +   K+
Sbjct: 368 IVKRPL-QSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKE 426

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A++ F  M  + +  D   +++ + A +     +LG    +H   IKSG + ++ V+ SL
Sbjct: 427 ALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCT--IHGFVIKSGLQLDVFVASSL 484

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D YS+ G  E +  +F  +P  N+V + SI++ Y RN +   ++++   +++  L PD 
Sbjct: 485 LDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLRNDLYPDS 544

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           V+F  VLA  +    + +G+ V   +  ++ I  D Q  + +IDM  + G+L  A+ + +
Sbjct: 545 VSFTSVLAAISSVAALLKGKSVHGYLVRLW-IPFDLQVENTLIDMYIKCGLLKYAQHIFE 603

Query: 579 QTPGGGDCMMWSSLLRSCRVHG 600
           +     + + W+S++     HG
Sbjct: 604 RI-SEKNLVAWNSMIGGYGSHG 624



 Score =  179 bits (454), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 129/520 (24%), Positives = 253/520 (48%), Gaps = 38/520 (7%)

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
           R   +AL LY +     +  +  T+ S+L  C++      G  IH  +++ G   + YI 
Sbjct: 35  RQYIEALKLYTK---SPVYTTRFTYPSLLKACASLSNLQYGKTIHSSIITTGLHSDQYIT 91

Query: 149 SPLVDLYMRMGPSVRALDLFDELPER-----NLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           S L+++Y++ G    A+ +FD+LP+      ++  WN ++  +    + +E +  + +M+
Sbjct: 92  SSLINIYVKCGTFTDAVKVFDQLPKSGVSVDDVTIWNSIIDGYFRFGQLEEGMVQFGRMQ 151

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
           + G +                    EGKQ+HS++++   ++ + F+  AL+D Y  CG  
Sbjct: 152 SSGYK--------------------EGKQIHSYIVR-NMLNFDPFLETALIDTYFKCGRP 190

Query: 264 IEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
            EA+  F  +    ++++WN ++  + +  L  ++LE +   +    +    SF   L+ 
Sbjct: 191 TEARYLFKKLKDRSNIVAWNVMIGGFGENGLWENSLEYYLLAKTENVKVVSSSFTCTLSA 250

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
             +   V FGKQ+H    K+GF+    +V ++L  MYGKC +IES+  VF   P + +E 
Sbjct: 251 CGQGEFVSFGKQVHCDAIKVGFEDDP-YVHTSLLTMYGKCQMIESAEKVFNEVPDKEIEL 309

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            N+L+++ + +G   DA+ ++  M    +  D  T+   L + S++   +LG  RL+H  
Sbjct: 310 WNALISAYVGNGYAYDALRIYKQMKLCTVLSDSFTILNVLTSSSMAGLYDLG--RLIHTE 367

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
            +K   +S+I +  +L+  YS+ G    ++ +F  +   +VV + S+++G+ +N   +EA
Sbjct: 368 IVKRPLQSSITIQSALLTMYSKFGDSNYANSIFSTMKERDVVAWGSVISGFCQNRKYKEA 427

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMI 561
           LD    M    + PD      +++ C     V  G  +    +KS  G+  D    S ++
Sbjct: 428 LDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKS--GLQLDVFVASSLL 485

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           DM  + G  ++A  +    P   + + W+S++ SC    N
Sbjct: 486 DMYSKFGFPERAGNIFSDMP-LKNLVAWNSII-SCYCRNN 523



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 105/410 (25%), Positives = 204/410 (49%), Gaps = 20/410 (4%)

Query: 25  PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           PL SS+ + S       L +YS         K G  N A  +F  M  RD+V +  +ISG
Sbjct: 372 PLQSSITIQS-----ALLTMYS---------KFGDSNYANSIFSTMKERDVVAWGSVISG 417

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
             + R  K+AL  +  M +  +K  +   +S++S C+       G  IH  V+  G  L+
Sbjct: 418 FCQNRKYKEALDFFRAMEADLVKPDSDIMASIISACTGLEKVDLGCTIHGFVIKSGLQLD 477

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           +++ S L+D+Y + G   RA ++F ++P +NL  WN ++  +C  + PD  + +++++  
Sbjct: 478 VFVASSLLDMYSKFGFPERAGNIFSDMPLKNLVAWNSIISCYCRNNLPDLSINLFSQVLR 537

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
             + P+ +SF  ++   S    L +GK +H ++++L W+  ++ V N L+D Y  CG L 
Sbjct: 538 NDLYPDSVSFTSVLAAISSVAALLKGKSVHGYLVRL-WIPFDLQVENTLIDMYIKCGLLK 596

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
            A+  F+ I   ++++WNS++  Y  +     A+ELF  M+    +P   +F+  L+  +
Sbjct: 597 YAQHIFERISEKNLVAWNSMIGGYGSHGECSKAIELFDEMRSSGIKPDDVTFLSLLSSCN 656

Query: 325 RTGNVYFGKQIHGYVT-KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
            +G +  G  +   +  K G +    H  + + D+YG+   +  + +  ++ P   +E  
Sbjct: 657 HSGLIEEGLHLFEMMKMKFGIEPRMEHYVN-IVDLYGRAGCLGDAYSFVKNMP---VEPD 712

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
            S+  SLL S  I   +E+   + ++ + ++    S  ++ L++   A L
Sbjct: 713 RSIWLSLLCSCKIHLNLELGEMVANKLLNMEPSKGSNYVQLLNLYGEAEL 762


>gi|147857367|emb|CAN80796.1| hypothetical protein VITISV_034275 [Vitis vinifera]
          Length = 771

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 158/550 (28%), Positives = 302/550 (54%), Gaps = 4/550 (0%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           SVL  C    +   G +IH  VL  G   ++++G+ L+ +Y        A  +FD++ ER
Sbjct: 99  SVLKACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMER 158

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           ++ +W+ M+R+       D  L +  +M    V P+ ++   MV   +    +  GK +H
Sbjct: 159 DVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMH 218

Query: 235 SHVIKLGWVD-VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           ++VI+    + + +    AL+D Y+ CG L  A++ F+ +    V+SW ++++     + 
Sbjct: 219 AYVIRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNR 278

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
           + +  +LF RMQ     P+  + +  +     TG +  GKQ+H Y+ + GF   S+ + +
Sbjct: 279 LEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFS-VSLALAT 337

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL DMYGKC+ I ++ A+F+S   R +    +++++   +  I  A  +F  M   G+  
Sbjct: 338 ALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRP 397

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
            +VT+ + L   +V+ + +LG  + +H    K   E +  ++ +L+D Y++CG I  + +
Sbjct: 398 TKVTIVSLLSLCAVAGALDLG--KWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGR 455

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F +  S ++  + +I+ G++ +G G EALD+   M ++G+ P+ +TF+ +L  C+H+G+
Sbjct: 456 LFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGL 515

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           V EG+ +F  M   +G+    +HY CM+D+LGRAG+LD+A E+++  P   + ++W +L+
Sbjct: 516 VTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 575

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
            +CR+H N  +G   A  L+E+EP +      +SN Y+    +  +  +R+T     + +
Sbjct: 576 AACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANRWSDAAGVRKTMKTVGMKK 635

Query: 654 DIGHSLIEVN 663
           + GHS+IEVN
Sbjct: 636 EPGHSVIEVN 645



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 110/433 (25%), Positives = 215/433 (49%), Gaps = 10/433 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+ +FD+M  RD+V+++ +I    + +    AL L  EM    ++ S     S++++ ++
Sbjct: 148 ARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFAD 207

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSP----LVDLYMRMGPSVRALDLFDELPERNLAT 178
                 G  +H  V+      N ++G P    L+D+Y + G    A  LF+ L ++ + +
Sbjct: 208 TANMRMGKAMHAYVIR--NSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVS 265

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  M+      +R +E  +++ +M+ E + PN ++   ++  C     L  GKQLH++++
Sbjct: 266 WTAMIAGCIRSNRLEEGTKLFIRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYIL 325

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           + G+  V++ +A ALVD Y  C  +  A+  FD     DV+ W +++S YA  + I  A 
Sbjct: 326 RNGF-SVSLALATALVDMYGKCSDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAF 384

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            LF +M+    RP+  + V  L+  +  G +  GK +H Y+ K   +   + + +AL DM
Sbjct: 385 NLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCI-LNTALVDM 443

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y KC  I ++  +F  A  R +   N+++T     G  ++A+++F  M  +G+  +++T 
Sbjct: 444 YAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITF 503

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
              L A S +     G  +L        G    I     ++D   R G ++ +H++ + +
Sbjct: 504 IGLLHACSHAGLVTEGK-KLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSM 562

Query: 479 P-SPNVVCFTSIM 490
           P  PN + + +++
Sbjct: 563 PIKPNTIVWGALV 575



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 171/339 (50%), Gaps = 3/339 (0%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N  + + ++   +D + K GHL  A++LF+ +  + +V++  +I+GC +    ++   L+
Sbjct: 227 NEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEGTKLF 286

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M    I  +  T  S++  C   G    G Q+H  +L  GF ++L + + LVD+Y + 
Sbjct: 287 IRMQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKC 346

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A  LFD    R++  W  ML A+ + +  D+   ++++M+  GV P  ++   ++
Sbjct: 347 SDIRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLL 406

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C++   LD GK +HS++ K   V+V+  +  ALVD Y+ CG +  A + F      D+
Sbjct: 407 SLCAVAGALDLGKWVHSYIDKER-VEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDI 465

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI-HG 337
             WN+I++ +A +    +AL++F  M+    +P+  +F+  L+  S  G V  GK++   
Sbjct: 466 CMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEK 525

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            V   G      H    + D+ G+  +++ +  + +S P
Sbjct: 526 MVHTFGLVPQIEHY-GCMVDLLGRAGLLDEAHEMIKSMP 563



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 72/288 (25%), Positives = 136/288 (47%), Gaps = 2/288 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M    + P   T+ +L   C     L     L +Y   N   +++  +   +D + K   
Sbjct: 289 MQEENIFPNEITMLSLIVECGFTGALQLGKQLHAYILRNGFSVSLALATALVDMYGKCSD 348

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + +A+ LFD    RD++ +  ++S   +     QA  L+D+M + G++ +  T  S+LS+
Sbjct: 349 IRNARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSL 408

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+ AG    G  +H  +      ++  + + LVD+Y + G    A  LF E   R++  W
Sbjct: 409 CAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGDINAAGRLFIEAISRDICMW 468

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  F      +E L ++ +M+ +GV+PN ++F  ++  CS   L+ EGK+L   ++ 
Sbjct: 469 NAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGKKLFEKMVH 528

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
              +   I     +VD     G L EA +    +P+  + I W ++V+
Sbjct: 529 TFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALVA 576


>gi|115466810|ref|NP_001057004.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|55773755|dbj|BAD72438.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|113595044|dbj|BAF18918.1| Os06g0185700 [Oryza sativa Japonica Group]
 gi|125596287|gb|EAZ36067.1| hypothetical protein OsJ_20377 [Oryza sativa Japonica Group]
          Length = 673

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 167/640 (26%), Positives = 311/640 (48%), Gaps = 8/640 (1%)

Query: 8   PR-VRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           PR    +  L P C ++  L +               I +  + +  +   G L SA+ +
Sbjct: 18  PRDASALVLLLPACGTLRSLRALHGRLLLLTSGLLRGIRARTKLLSCYAALGDLASARGV 77

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH--GIKESASTFSSVLSVCSNAG 124
            D  P  D   Y +++           A+ L+ +M        ++    S  L  C  + 
Sbjct: 78  LDGTPRPDAYAYRVMLGWLVDAGSHADAVALHRDMRRRCPAAAQADVVLSLALKACVRSA 137

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
            +  G ++HC V+  G G + ++ + LVD+Y + G    A  +FD +PERN+ +W  ML 
Sbjct: 138 DFRYGRRLHCDVVKAG-GADGFVMNSLVDMYAKAGDLENARKVFDRVPERNVVSWTSMLS 196

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
              +    +E L ++N+M+ + V P+  +   ++  C++   L +G+ +H  VIK G + 
Sbjct: 197 GSIQNGIAEEGLVLFNEMRQDNVHPSEYTMVSVLAACAMLGGLHQGRWIHGSVIKYG-LS 255

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            N F++ +L+D Y+ C  + +A++ FD +   D++ W +++  Y       DAL+LF   
Sbjct: 256 TNSFISASLLDMYAKCEKVEDARRVFDELEFVDIVLWTAMIVGYTQNKRPLDALQLFLHK 315

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +     P+  +    ++ +++  ++  G+ +H    KLG     V V++AL DMY KC  
Sbjct: 316 KFVSIVPNSVTIATVISASAQLRHLPLGRSVHAIGVKLGTMESDV-VRNALVDMYAKCQA 374

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  + ++F     + +   NS+M     +G   +++ +F  M  +GI  D +++   L A
Sbjct: 375 LPEANSIFGRILIKDVVAWNSMMAGYSENGMANESLVLFNRMRMQGISPDAISVVNALSA 434

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
               A  ++G  +  H  AIK  F SNI V+ +L++ YS+C  +  + +VF  +   N V
Sbjct: 435 CVCLADLHIG--KGFHTYAIKYAFMSNIYVNTALLNLYSKCADLPSAQRVFNDMTDRNSV 492

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +++++ GY   G    ++D+   M++  + P++V F  +L+ C+H+GMV  G+  F+SM
Sbjct: 493 TWSAMIGGYGMQGDSAGSIDLFNEMLKENIHPNEVVFTSILSACSHTGMVTAGKEYFDSM 552

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
              + I    +HY+CM+D++ RAG L++A E +Q  P      +W S L  C++H     
Sbjct: 553 ARHFNITPSMKHYACMVDVMARAGNLEEALEFIQNMPIKAGISVWGSFLHGCKLHSRLEF 612

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           G      +  L P     Y  +SN Y+  G ++ S  IR 
Sbjct: 613 GEEAIKKMAALHPETPDFYVLMSNLYTSYGRWDKSQTIRR 652


>gi|356519174|ref|XP_003528249.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Glycine max]
          Length = 975

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 183/665 (27%), Positives = 336/665 (50%), Gaps = 9/665 (1%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLN 61
           +T L P   T+  +A  C  +  +     + +   +     + +  N  I  + K G + 
Sbjct: 188 ATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFVE 247

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV---SHGIKESASTFSSVLS 118
           SA K+F+ M  R++V++N ++  C +     +   ++  ++     G+    +T  +V+ 
Sbjct: 248 SAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVIP 307

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C+  G    G+ +H     LG    + + + LVD+Y + G    A  LFD    +N+ +
Sbjct: 308 ACAAVGEVRMGMVVHGLAFKLGITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNVVS 367

Query: 179 WNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           WN ++  + +      V  +  +M + E V  N ++   ++  CS    L   K++H + 
Sbjct: 368 WNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHGYA 427

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            + G++  +  VANA V  Y+ C SL  A++ F  +    V SWN+++  +A       +
Sbjct: 428 FRHGFLK-DELVANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPGKS 486

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L+LF  M      P   +    L   +R   +  GK+IHG++ + G +     +  +L  
Sbjct: 487 LDLFLVMMDSGMDPDRFTIGSLLLACARLKFLRCGKEIHGFMLRNGLELDEF-IGISLMS 545

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           +Y +C+ +     +F+    +SL C N ++T    +    +A++ F  M+  GI   E+ 
Sbjct: 546 LYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQEIA 605

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           ++  L A S  ++  LG  + +H  A+K+    +  V+C+L+D Y++CG +E S  +F++
Sbjct: 606 VTGVLGACSQVSALRLG--KEVHSFALKAHLSEDAFVTCALIDMYAKCGCMEQSQNIFDR 663

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +   +   +  I+ GY  +G G +A+++ E+M  +G  PD  TFL VL  CNH+G+V EG
Sbjct: 664 VNEKDEAVWNVIIAGYGIHGHGLKAIELFELMQNKGGRPDSFTFLGVLIACNHAGLVTEG 723

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
                 M+++YG+    +HY+C++DMLGRAG L +A +L+ + P   D  +WSSLL SCR
Sbjct: 724 LKYLGQMQNLYGVKPKLEHYACVVDMLGRAGQLTEALKLVNEMPDEPDSGIWSSLLSSCR 783

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
            +G+  IG  V+  L+ELEP     Y  +SN Y+ +G+++   ++R+      L +D G 
Sbjct: 784 NYGDLEIGEEVSKKLLELEPNKAENYVLLSNLYAGLGKWDEVRKVRQRMKENGLHKDAGC 843

Query: 658 SLIEV 662
           S IE+
Sbjct: 844 SWIEI 848



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 141/566 (24%), Positives = 274/566 (48%), Gaps = 15/566 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++  S R I  +   G  + ++ +FD    +D+  YN L+SG  +    + A+ L+ E++
Sbjct: 127 DVVLSTRIIAMYSACGSPSDSRGVFDAAKEKDLFLYNALLSGYSRNALFRDAISLFLELL 186

Query: 103 SH-GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           S   +     T   V   C+       G  +H   L  G   + ++G+ L+ +Y + G  
Sbjct: 187 SATDLAPDNFTLPCVAKACAGVADVELGEAVHALALKAGGFSDAFVGNALIAMYGKCGFV 246

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM---KAEGVEPNGLSFCYMV 218
             A+ +F+ +  RNL +WN ++ A  E     E   ++ ++   + EG+ P+  +   ++
Sbjct: 247 ESAVKVFETMRNRNLVSWNSVMYACSENGGFGECCGVFKRLLISEEEGLVPDVATMVTVI 306

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+    +  G  +H    KLG +   + V N+LVD YS CG L EA+  FD     +V
Sbjct: 307 PACAAVGEVRMGMVVHGLAFKLG-ITEEVTVNNSLVDMYSKCGYLGEARALFDMNGGKNV 365

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           +SWN+I+  Y+         EL   MQ   K R +  + +  L   S    +   K+IHG
Sbjct: 366 VSWNTIIWGYSKEGDFRGVFELLQEMQREEKVRVNEVTVLNVLPACSGEHQLLSLKEIHG 425

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           Y  + GF    + V +A    Y KC+ ++ +  VF    G+++   N+L+ +   +G   
Sbjct: 426 YAFRHGFLKDEL-VANAFVAAYAKCSSLDCAERVFCGMEGKTVSSWNALIGAHAQNGFPG 484

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            ++++F  M+D G+  D  T+ + L  L+ +    L   + +H   +++G E +  +  S
Sbjct: 485 KSLDLFLVMMDSGMDPDRFTIGSLL--LACARLKFLRCGKEIHGFMLRNGLELDEFIGIS 542

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           LM  Y +C  + L   +F+K+ + ++VC+  ++ G+S+N +  EALD    M+  G+ P 
Sbjct: 543 LMSLYIQCSSMLLGKLIFDKMENKSLVCWNVMITGFSQNELPCEALDTFRQMLSGGIKPQ 602

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSC-MIDMLGRAGILDKAEE 575
           ++    VL  C+    ++ G+ V + ++K+    DA     +C +IDM  + G +++++ 
Sbjct: 603 EIAVTGVLGACSQVSALRLGKEVHSFALKAHLSEDA---FVTCALIDMYAKCGCMEQSQN 659

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +  +     D  +W+ ++    +HG+
Sbjct: 660 IFDRV-NEKDEAVWNVIIAGYGIHGH 684



 Score =  121 bits (304), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/338 (27%), Positives = 167/338 (49%), Gaps = 15/338 (4%)

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++R C     +  G+++H+ V     +  ++ ++  ++  YSACGS  +++  FD     
Sbjct: 98  LLRACGHHKNIHVGRKVHALVSASHKLRNDVVLSTRIIAMYSACGSPSDSRGVFDAAKEK 157

Query: 277 DVISWNSIVSIYADYDLIFDALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           D+  +N+++S Y+   L  DA+ LF   +      P   +        +   +V  G+ +
Sbjct: 158 DLFLYNALLSGYSRNALFRDAISLFLELLSATDLAPDNFTLPCVAKACAGVADVELGEAV 217

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H    K G       V +AL  MYGKC  +ES+V VFE+   R+L   NS+M +   +G 
Sbjct: 218 HALALKAG-GFSDAFVGNALIAMYGKCGFVESAVKVFETMRNRNLVSWNSVMYACSENGG 276

Query: 396 IKDAVEMFGFMV---DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
             +   +F  ++   +EG+  D  T+ T + A +      +G   ++H  A K G    +
Sbjct: 277 FGECCGVFKRLLISEEEGLVPDVATMVTVIPACAAVGEVRMG--MVVHGLAFKLGITEEV 334

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V+ SL+D YS+CG++  +  +F+     NVV + +I+ GYS+ G  R   ++L+ M + 
Sbjct: 335 TVNNSLVDMYSKCGYLGEARALFDMNGGKNVVSWNTIIWGYSKEGDFRGVFELLQEMQRE 394

Query: 513 GLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
             +  ++VT L VL  C+      E QL+  S+K ++G
Sbjct: 395 EKVRVNEVTVLNVLPACS-----GEHQLL--SLKEIHG 425


>gi|297742828|emb|CBI35582.3| unnamed protein product [Vitis vinifera]
          Length = 638

 Score =  283 bits (724), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 172/575 (29%), Positives = 316/575 (54%), Gaps = 17/575 (2%)

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
            L +Y++MV  G++    TF  VL  C++A    +G ++H  V+ LGF  ++++G+ L+ 
Sbjct: 25  GLEVYNQMVRIGVRPDDHTFPFVLKACADAFEVRKGREVHGSVVKLGFESDVFVGNTLLS 84

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAF-CELSRPDEVLRMYNKMKAEGVEPNGL 212
            Y   G    A  +FDE+PE++L +WN M+  F        + L M+  M  EG++PN +
Sbjct: 85  FYGNCGGLRDAGRVFDEMPEKDLVSWNTMIGVFSVNGWHYRDALDMFRLMIDEGLKPNSI 144

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +    +           G+++H   I++G ++ +IF+AN+L+D Y+  G   EA   F  
Sbjct: 145 TISSFLPVLVELEFFKAGREVHGSSIRMG-LESDIFIANSLIDMYAKSGHSTEASNVFYK 203

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +   +V+SWN++++ +A       A+ L  +MQ   + P+  +F   L   +R G V  G
Sbjct: 204 LDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVLPACARMGLVRPG 263

Query: 333 KQIHGYVTKLG--FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
           K+IH     +G  FD   + V +ALTDMY K   ++ +  VF+++  R     N L+   
Sbjct: 264 KEIHARSIHMGCAFD---LFVSNALTDMYAKSGHLKLARNVFDTSL-RDEVSYNILIVGH 319

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSG 447
             + +  +++ +F  M   G+  D V+    L     SA ANL + +    +H   ++  
Sbjct: 320 SQTSDCSESLSLFSEMQLMGLKQDNVSFMGAL-----SACANLTAIKQGKEIHGFLLRKL 374

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           F  ++ V+ SL+D Y++CG I L+  +F+++ + +V  + +++ GY   G    A+D+ E
Sbjct: 375 FHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDTAIDLFE 434

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M +  +  D V+F+ VL+ C+H G++++G+  F+ +K+  GI+  + HY+CM+D+LGRA
Sbjct: 435 NMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKA-RGIEPTQMHYACMVDLLGRA 493

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G++++A EL++  P   D  +W +LL +CR++GN  +    A  L EL+P     Y+ +S
Sbjct: 494 GLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHLFELKPEHSGYYTLLS 553

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           N Y+E G ++ + +IRE   +R + +  G S +++
Sbjct: 554 NMYAETGRWDEANRIRELMKSRGVKKSPGCSWVQI 588



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 114/441 (25%), Positives = 216/441 (48%), Gaps = 12/441 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR----HPKQALYLY 98
           +++  N  +  +   G L  A ++FDEMP +D+V++N +I   G F     H + AL ++
Sbjct: 75  DVFVGNTLLSFYGNCGGLRDAGRVFDEMPEKDLVSWNTMI---GVFSVNGWHYRDALDMF 131

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M+  G+K ++ T SS L V     F+  G ++H   + +G   +++I + L+D+Y + 
Sbjct: 132 RLMIDEGLKPNSITISSFLPVLVELEFFKAGREVHGSSIRMGLESDIFIANSLIDMYAKS 191

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G S  A ++F +L  +N+ +WN M+  F +       + +  +M+  G  PN ++F  ++
Sbjct: 192 GHSTEASNVFYKLDAKNVVSWNAMIANFAQNRFELVAVGLVRQMQDYGELPNSVTFTNVL 251

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+   L+  GK++H+  I +G    ++FV+NAL D Y+  G L  A+  FD   + D 
Sbjct: 252 PACARMGLVRPGKEIHARSIHMG-CAFDLFVSNALTDMYAKSGHLKLARNVFD-TSLRDE 309

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +S+N ++  ++      ++L LF  MQL   +    SF+  L+  +    +  GK+IHG+
Sbjct: 310 VSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTAIKQGKEIHGF 369

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + +  F H  + V ++L D Y KC  I  +  +F+    + +   N+++      G +  
Sbjct: 370 LLRKLF-HIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILGYGMLGELDT 428

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+++F  M  + +  D V+    L A S       G        A   G E        +
Sbjct: 429 AIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKA--RGIEPTQMHYACM 486

Query: 459 MDAYSRCGHIELSHQVFEKIP 479
           +D   R G +E + ++ + +P
Sbjct: 487 VDLLGRAGLMEEAAELIKGLP 507



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 83/304 (27%), Positives = 149/304 (49%), Gaps = 7/304 (2%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           LP   T T + P C  +  +     + +         +++ SN   D + KSGHL  A+ 
Sbjct: 241 LPNSVTFTNVLPACARMGLVRPGKEIHARSIHMGCAFDLFVSNALTDMYAKSGHLKLARN 300

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           +FD    RD V+YN+LI G  +     ++L L+ EM   G+K+   +F   LS C+N   
Sbjct: 301 VFD-TSLRDEVSYNILIVGHSQTSDCSESLSLFSEMQLMGLKQDNVSFMGALSACANLTA 359

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
             +G +IH  +L   F ++L++ + L+D Y + G    A ++FD +  +++A+WN M+  
Sbjct: 360 IKQGKEIHGFLLRKLFHIHLFVANSLLDFYTKCGRIGLARNIFDRMTNKDVASWNTMILG 419

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           +  L   D  + ++  M+ + VE + +SF  ++  CS G LL++G++    +   G    
Sbjct: 420 YGMLGELDTAIDLFENMRKDDVEYDSVSFIAVLSACSHGGLLEKGRKYFDELKARGIEPT 479

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVS---IYADYDLIFDALELF 301
            +  A  +VD     G + EA +    +P V D   W +++    IY + +L   A E  
Sbjct: 480 QMHYA-CMVDLLGRAGLMEEAAELIKGLPIVPDANIWGALLGACRIYGNLELAAWAAEHL 538

Query: 302 FRMQ 305
           F ++
Sbjct: 539 FELK 542


>gi|115459414|ref|NP_001053307.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|32482936|emb|CAE02340.1| OSJNBb0072M01.1 [Oryza sativa Japonica Group]
 gi|38345689|emb|CAD41109.2| OSJNBb0070J16.5 [Oryza sativa Japonica Group]
 gi|113564878|dbj|BAF15221.1| Os04g0514500 [Oryza sativa Japonica Group]
 gi|215768472|dbj|BAH00701.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|218195211|gb|EEC77638.1| hypothetical protein OsI_16630 [Oryza sativa Indica Group]
          Length = 1027

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/625 (27%), Positives = 331/625 (52%), Gaps = 7/625 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  +  I+ + K G  + AK +FD    +++V +N +++G  +   P++A+ ++  M+
Sbjct: 359 NVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMM 418

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            + ++    TF S+L  C+    +  G Q+HC  +     ++L++ +  +D+Y + G   
Sbjct: 419 RYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIG 478

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  +P ++  +WN +     +    +E + M  +M+  G+ P+ +SF   +  CS
Sbjct: 479 DAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACS 538

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                + GKQ+H   IK G +  N  V ++L+D YS  G +  ++K F  +    ++  N
Sbjct: 539 NIRATETGKQIHCLAIKYG-ICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPIN 597

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ +   +   +A++LF ++     +PS  +F   L+  S + N   GKQ+H Y  K 
Sbjct: 598 ALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKS 657

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVE 401
           G  +    +  +L  +Y K  ++E +  +    P  ++L    ++++    +G    ++ 
Sbjct: 658 GVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLV 717

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALS-VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            F  M    +  DE T ++ LKA S V+A A+    + +H    KSGF S    + +L+D
Sbjct: 718 SFWRMRHCNVRSDEATFASVLKACSDVTAFAD---GKEIHGLITKSGFGSYETATSALID 774

Query: 461 AYSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            YS+CG +  S + F+++ +  +++ + S++ G+++NG   EAL + + M +  + PD+V
Sbjct: 775 MYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEV 834

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TFL VL  C HSG++ EG+  F SM+ VYG+     HY+C ID+LGR G L +A+E + Q
Sbjct: 835 TFLGVLIACTHSGLISEGRHFFGSMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQ 894

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D ++W++ L +CR+H +E  G+  A  L+ELEP   + Y  +S+ ++  G +  +
Sbjct: 895 LPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEA 954

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
              RE+   + + +  G S I V +
Sbjct: 955 KVTRESMREKGVAKFPGCSWITVGN 979



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/547 (29%), Positives = 274/547 (50%), Gaps = 11/547 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I     SG L+ A  L  +MP    V +N +ISG  +       L LY +M S G+  + 
Sbjct: 266 ISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTR 325

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           STF+S+LS  +N   + EG Q+H   +  G   N+++GS L++LY + G    A ++FD 
Sbjct: 326 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 385

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
             E+N+  WN ML  F +   P+E +RM+  M    ++ +  +F  ++  C+       G
Sbjct: 386 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 445

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+H   IK   +D+++FVANA +D YS  G++ +AK  F  IP  D ISWN++    A 
Sbjct: 446 KQVHCVTIK-NCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 504

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF--DHGS 348
                +A+ +  RM+L    P   SF   +N  S       GKQIH    K G   +H  
Sbjct: 505 NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHA- 563

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             V S+L D+Y K   +ESS  +F      S+   N+L+   + + N  +A+++F  ++ 
Sbjct: 564 --VGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLK 621

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGH 467
           +G+    VT S+ L   S S ++ +G  + +HC  +KSG    +  +  SL   Y +   
Sbjct: 622 DGLKPSSVTFSSILSGCSGSLNSAIG--KQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKM 679

Query: 468 IELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +E ++++  ++P   N+  +T+I++GY++NG G  +L     M    +  D+ TF  VL 
Sbjct: 680 LEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLK 739

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+      +G+ + + + +  G  +     S +IDM  + G +  + E  ++     D 
Sbjct: 740 ACSDVTAFADGKEI-HGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDI 798

Query: 587 MMWSSLL 593
           M W+S++
Sbjct: 799 MPWNSMI 805



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 122/458 (26%), Positives = 220/458 (48%), Gaps = 17/458 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++++ +N T+D + K G +  AK LF  +P +D +++N L  G  +    ++A+ +   M
Sbjct: 459 ISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRM 518

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             HGI     +FS+ ++ CSN      G QIHC  +  G   N  +GS L+DLY + G  
Sbjct: 519 RLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDV 578

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +  +F ++   ++   N ++  F + +  DE ++++ ++  +G++P+ ++F  ++ GC
Sbjct: 579 ESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGC 638

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVIS 280
           S  +    GKQ+H + +K G +  +  +  +L   Y     L +A K    +P   ++  
Sbjct: 639 SGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFE 698

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +I+S YA       +L  F+RM+ C  R    +F   L   S       GK+IHG +T
Sbjct: 699 WTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLIT 758

Query: 341 KLGFDHGSVHV-QSALTDMYGKCNVIESSVAVFESAPGRS-LECCNSLMTSLLHSGNIKD 398
           K GF  GS     SAL DMY KC  + SS   F+    +  +   NS++     +G   +
Sbjct: 759 KSGF--GSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADE 816

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN-----LGSCRLLHCCAIKSGFESNIA 453
           A+ +F  M +  I  DEVT    L A + S   +      GS R ++      G    + 
Sbjct: 817 ALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGSMRKVY------GLTPRLD 870

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
                +D   R GH++ + +  +++P  P+ V + + +
Sbjct: 871 HYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYL 908



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 220/464 (47%), Gaps = 40/464 (8%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           VLS CS  G    G Q+HC V+  GF  +++  + LVD+Y + G    A  +FD +   +
Sbjct: 164 VLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPD 223

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
              W+ M+  +  +    E L ++++M   G  P+ ++   +     I  L   G+  H 
Sbjct: 224 TICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTI-----ISTLASSGRLDH- 277

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
                         A AL+            KK    +P    ++WN+++S +A   L F
Sbjct: 278 --------------ATALL------------KK----MPTPSTVAWNAVISGHAQSGLEF 307

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           + L L+  M+     P+  +F   L+ A+       G+Q+H      G D  +V V S+L
Sbjct: 308 NVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLD-ANVFVGSSL 366

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            ++Y KC     +  VF+ +  +++   N+++T  + +   ++A+ MF +M+   +  DE
Sbjct: 367 INLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDE 426

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T  + L A +  +S  LG  + +HC  IK+  + ++ V+ + +D YS+ G I  +  +F
Sbjct: 427 FTFVSILGACTYLSSFYLG--KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALF 484

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
             IP  + + + ++  G ++N    EA+ ML+ M   G+ PD V+F   +  C++    +
Sbjct: 485 SLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 544

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            G+ + + +   YGI ++    S +ID+  + G ++ + ++  Q
Sbjct: 545 TGKQI-HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQ 587



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 130/558 (23%), Positives = 235/558 (42%), Gaps = 83/558 (14%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H R+L  G  L   +G  LV+LY + G    A        ER     + +L        
Sbjct: 78  LHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGS 137

Query: 192 PDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           P +VL  +  ++   G  P+      ++  CS   +L  G+Q+H  V+K G+   ++F  
Sbjct: 138 PGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSS-SVFCE 196

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALVD Y+ CG +  A++ FD I   D I W+S+++ Y       +AL LF RM      
Sbjct: 197 AALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSA 256

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + V  ++  + +G +               DH +                     A
Sbjct: 257 PDQVTLVTIISTLASSGRL---------------DHAT---------------------A 280

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           + +  P  S    N++++    SG   + + ++  M   G+     T ++ L     SA+
Sbjct: 281 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASML-----SAA 335

Query: 431 ANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           AN+ +    + +H  A+  G ++N+ V  SL++ Y++CG    +  VF+     N+V + 
Sbjct: 336 ANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWN 395

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKS 546
           +++ G+ +N +  EA+ M + M++  L  D+ TF+ +L  C +      G+ V   ++K+
Sbjct: 396 AMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKN 455

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL-------------- 592
              +D      +  +DM  + G +  A+ L    P   D + W++L              
Sbjct: 456 C--MDISLFVANATLDMYSKYGAIGDAKALFSLIP-YKDSISWNALTVGLAQNLEEEEAV 512

Query: 593 --LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
             L+  R+HG              + P D + +S   N  S I   E   QI   A+   
Sbjct: 513 CMLKRMRLHG--------------ITPDDVS-FSTAINACSNIRATETGKQIHCLAIKYG 557

Query: 651 LTRD--IGHSLIEVNSCH 666
           +  +  +G SLI++ S H
Sbjct: 558 ICSNHAVGSSLIDLYSKH 575


>gi|125529196|gb|EAY77310.1| hypothetical protein OsI_05285 [Oryza sativa Indica Group]
          Length = 785

 Score =  283 bits (723), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 173/632 (27%), Positives = 327/632 (51%), Gaps = 12/632 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +++  N  +  + + G    A++L DEMP R+ V++NLLI    +      +L    
Sbjct: 39  PAASLFLRNTLLAAYCRLGGPLPARRLLDEMPRRNAVSFNLLIDAYSREGLAPLSLETLA 98

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
                G+     ++++ L+ CS AG    G  +H   +  G    +++ + LV +Y + G
Sbjct: 99  RARRAGVDVDRFSYAAALAACSRAGHLRAGRAVHALAILDGLSSGVFVSNSLVSMYSKCG 158

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD   ER+  +WN ++  +      +E++R++  M+  G+  N  +   +++
Sbjct: 159 EMGEARRVFDVAEERDDVSWNSLVSGYVRAGAREEMVRVFAMMRRGGMGLNSFALGSVIK 218

Query: 220 GCSI--GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
            CS      +D  + +H  VIK G +D ++F+ +A++D Y+  G+L+EA   F  +   +
Sbjct: 219 CCSGRGDGTMDIAEAVHGCVIKAG-LDSDVFLVSAMIDMYAKKGALVEAAALFRSVQEPN 277

Query: 278 VISWNSIVSIYADYDLIF------DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
           V+ +N++++ +   + +       +AL L+  +Q    +P+  +F   L   +  G + F
Sbjct: 278 VVMFNTMIAGFCRTETVIGKEVASEALTLYSEVQSRGMQPTEFTFSSVLRACNLAGYLEF 337

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           GKQIHG V K  F      + SAL D+Y     +E     F S+P   +    ++++  +
Sbjct: 338 GKQIHGQVIKYTFQEDDF-IGSALIDLYFNSGCMEDGFRCFRSSPKHDIVTWTAMVSGCV 396

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            +   + A+ +F   +  G+  D  T+S+ + A +  A A  G    + C A KSGF+  
Sbjct: 397 QNELHEKALSLFHESLGAGLKPDLFTISSVMNACASLAVARAGE--QIQCFATKSGFDRF 454

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             +  S +  Y+R G ++ + + F+++ S +VV ++++++ ++++G  R+AL   + M+ 
Sbjct: 455 TVMGNSCVHMYARSGDVDAATRRFQEMESHDVVSWSAVISCHAQHGCARDALHFFDEMVD 514

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
             ++P+++TFL VL  C+H G+V EG   + +M   YG+    +H +C++D+LGRAG L 
Sbjct: 515 AKVVPNEITFLGVLTACSHGGLVDEGLRYYETMNKDYGLSPTIKHCTCVVDLLGRAGRLA 574

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
            AE  +       D ++W SLL SCR+H +   G+ VAN +MELEP   A Y  + N Y 
Sbjct: 575 DAEAFISNGIFHADPVIWRSLLASCRIHRDLERGQLVANRIMELEPTSSASYVILYNMYL 634

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           + GE  ++ + R+    R + ++ G S IE+ 
Sbjct: 635 DAGELSLASKTRDLMKQRGVKKEPGLSWIELK 666


>gi|302766669|ref|XP_002966755.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
 gi|300166175|gb|EFJ32782.1| hypothetical protein SELMODRAFT_85926 [Selaginella moellendorffii]
          Length = 811

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 173/622 (27%), Positives = 321/622 (51%), Gaps = 13/622 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDE--MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE 108
           +D + K G L+ A+++FD+  + ++ M  +  ++SG     H +QAL LY   +S   + 
Sbjct: 67  VDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFLSVSSEP 126

Query: 109 SAST-FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             +    S ++ CS+A F  +G  IH ++ S     + ++G+ LV++Y R     RA   
Sbjct: 127 PDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKA 186

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+++  +NL +WN+++ A+ +       + ++ +M  EGV  + ++F +++  C      
Sbjct: 187 FEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAA 246

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            + +++H   ++L  ++ ++FVA++LV+ Y  CG L EAK+ FD +P+ + ++  S+++ 
Sbjct: 247 GDVRRIHKK-LELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTMTSMLAA 305

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-DH 346
           YA + L  +ALE++  M+   ++    +F+  L+  S  G +  G+ IH  +   G    
Sbjct: 306 YAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLLVSGIIQQ 365

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V + +AL +MYG+C V++++ ++F+    ++    N+LM S    G  K+A+ ++  M
Sbjct: 366 PDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEALNLYHSM 425

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             +    + +T    L A S   +   G  R  H     +GFE  + V  +L++ Y +CG
Sbjct: 426 DAQP---NSLTFLAMLTACSTVGALLQG--RAAHARLAPAGFEKEVEVGVALVNMYGKCG 480

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +E +   F K+    VV +T  M   + +G  RE L +   M   G+ PD V  L  L 
Sbjct: 481 SLEDALGTFAKLERKTVVTWTVAMLALAHHGEFRETLRLFTEMELDGVAPDSVALLAALF 540

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+HSG +KEG+  F +M   YG+     HY C++D+L R G+L +AEEL+   P     
Sbjct: 541 ACSHSGKLKEGRSYFTNMIQDYGVSPTLAHYDCVVDLLCRTGLLGRAEELIDSMPFEPSA 600

Query: 587 MMWSSLLRSCRVHGNEIIGRRV-ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
           + W++LL +CR H       +V A+  +E EP +  +Y  +S  YS +  +    ++  +
Sbjct: 601 VTWTTLLAACRTHSTLYDKAKVAADKALETEPHNAGIYFALSYMYSGVRTYR-QERLNVS 659

Query: 646 ALARKLTRDIGHSLIEV-NSCH 666
                + R +G   IE  N  H
Sbjct: 660 DKLNSIQRQVGRCFIETRNQIH 681



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 120/480 (25%), Positives = 231/480 (48%), Gaps = 16/480 (3%)

Query: 21  TSIVPLSSSLLLDSYCQPNPQL-------NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR 73
           ++I   SS+  LD     + Q+       + +  N  ++ + +   L+ A+K F+++ A+
Sbjct: 134 SAITACSSAEFLDDGRAIHAQISSRELDHHTHLGNGLVNMYGRCKELHRARKAFEKITAK 193

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           ++V++N++I    +  H   A+ L+  M   G+   A TF  VL  C       +  +IH
Sbjct: 194 NLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDACGGVEAAGDVRRIH 253

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            ++   G   ++++ S LV+ Y + G    A  +FD +P +N  T   ML A+ +    +
Sbjct: 254 KKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTMTSMLAAYAQHGLGE 313

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV-NIFVANA 252
           E L +Y +M+++G + + ++F   +  CS    L +G+ +HS ++  G +   ++ +  A
Sbjct: 314 EALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRLLVSGIIQQPDVVLGTA 373

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L++ Y  CG L  AK  FD +   + I+WN+++  YA +    +AL L+  M     +P+
Sbjct: 374 LLNMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKEALNLYHSMD---AQPN 430

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +F+  L   S  G +  G+  H  +   GF+   V V  AL +MYGKC  +E ++  F
Sbjct: 431 SLTFLAMLTACSTVGALLQGRAAHARLAPAGFEK-EVEVGVALVNMYGKCGSLEDALGTF 489

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
                +++      M +L H G  ++ + +F  M  +G+  D V L   L   + S S  
Sbjct: 490 AKLERKTVVTWTVAMLALAHHGEFRETLRLFTEMELDGVAPDSVALLAAL--FACSHSGK 547

Query: 433 LGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
           L   R      I+  G    +A    ++D   R G +  + ++ + +P  P+ V +T+++
Sbjct: 548 LKEGRSYFTNMIQDYGVSPTLAHYDCVVDLLCRTGLLGRAEELIDSMPFEPSAVTWTTLL 607



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 233/492 (47%), Gaps = 34/492 (6%)

Query: 105 GIKESASTFSSVLSVCSNAG--FYTEGIQIH---CRVLSLGFGLNL----------YIGS 149
           G+  SAS   S +S C+  G  F ++G ++H   C+    G G  +           + +
Sbjct: 5   GVPRSASNLVSSISACARLGSAFLSQGRELHERYCQWWRRGGGGEVAVAVAGEEDDLVAT 64

Query: 150 PLVDLYMRMGPSVRALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            LVD+Y + G    A  +FD+  +  + +A W  M+  +       + L +Y +  +   
Sbjct: 65  ALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFLSVSS 124

Query: 208 E-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           E P+ +     +  CS    LD+G+ +H+  I    +D +  + N LV+ Y  C  L  A
Sbjct: 125 EPPDTVMLLSAITACSSAEFLDDGRAIHAQ-ISSRELDHHTHLGNGLVNMYGRCKELHRA 183

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           +K+F+ I   +++SWN I+  YA       A+ELF RM            V FL+     
Sbjct: 184 RKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMD---PEGVAADAVTFLHVLDAC 240

Query: 327 GNVYFG---KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           G V      ++IH  +   G +   V V S+L + YGKC  +  +  VF++ P ++    
Sbjct: 241 GGVEAAGDVRRIHKKLELSGLE-WDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTVTM 299

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
            S++ +    G  ++A+E++  M  +G   D VT  + L A S   + + G  R +H   
Sbjct: 300 TSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQG--RAIHSRL 357

Query: 444 IKSGF--ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
           + SG   + ++ +  +L++ Y RCG ++ +  +F+ +   N + + ++M  Y++ G G+E
Sbjct: 358 LVSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGMADKNTITWNALMGSYAQWGYGKE 417

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           AL++   M  +   P+ +TFL +L  C+  G + +G+     +    G + + +    ++
Sbjct: 418 ALNLYHSMDAQ---PNSLTFLAMLTACSTVGALLQGRAAHARLAPA-GFEKEVEVGVALV 473

Query: 562 DMLGRAGILDKA 573
           +M G+ G L+ A
Sbjct: 474 NMYGKCGSLEDA 485



 Score =  165 bits (418), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 121/413 (29%), Positives = 205/413 (49%), Gaps = 24/413 (5%)

Query: 202 MKAEGVEPNGLSFCYMVRGCS-IG-MLLDEGKQLHSHVIKL------GWVDVNI------ 247
           M  EGV  +  +    +  C+ +G   L +G++LH    +       G V V +      
Sbjct: 1   MDLEGVPRSASNLVSSISACARLGSAFLSQGRELHERYCQWWRRGGGGEVAVAVAGEEDD 60

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFR-M 304
            VA ALVD YS CGSL +A++ FD   VD   +  W ++VS YA +     ALEL+ R +
Sbjct: 61  LVATALVDMYSKCGSLDDARRVFDDYSVDSKRMALWTAMVSGYALHGHSRQALELYQRFL 120

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
            +  + P     +  +   S    +  G+ IH  ++    DH   H+ + L +MYG+C  
Sbjct: 121 SVSSEPPDTVMLLSAITACSSAEFLDDGRAIHAQISSRELDH-HTHLGNGLVNMYGRCKE 179

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +   FE    ++L   N ++ +    G+   A+E+F  M  EG+  D VT    L A
Sbjct: 180 LHRARKAFEKITAKNLVSWNVIIGAYAQEGHRGHAMELFQRMDPEGVAADAVTFLHVLDA 239

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
                +A  G  R +H     SG E ++ V+ SL++AY +CG +  + +VF+ +P  N V
Sbjct: 240 CGGVEAA--GDVRRIHKKLELSGLEWDVFVASSLVNAYGKCGCLAEAKRVFDTMPLKNTV 297

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
             TS++  Y+++G+G EAL++   M  +G   D+VTF+  L  C+  G + +G+ + + +
Sbjct: 298 TMTSMLAAYAQHGLGEEALEIYREMESQGRKADRVTFISALDACSSIGALSQGRAIHSRL 357

Query: 545 KSVYGI--DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
             V GI    D    + +++M GR G+LD A+ L        + + W++L+ S
Sbjct: 358 L-VSGIIQQPDVVLGTALLNMYGRCGVLDAAKSLFDGM-ADKNTITWNALMGS 408



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 146/295 (49%), Gaps = 14/295 (4%)

Query: 9   RVRTITTLAPTCTSIVPLS------SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNS 62
           RV  I+ L   C+SI  LS      S LL+    Q   Q ++      ++ + + G L++
Sbjct: 331 RVTFISAL-DACSSIGALSQGRAIHSRLLVSGIIQ---QPDVVLGTALLNMYGRCGVLDA 386

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           AK LFD M  ++ +T+N L+    ++ + K+AL LY  M +   + ++ TF ++L+ CS 
Sbjct: 387 AKSLFDGMADKNTITWNALMGSYAQWGYGKEALNLYHSMDA---QPNSLTFLAMLTACST 443

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
            G   +G   H R+   GF   + +G  LV++Y + G    AL  F +L  + + TW + 
Sbjct: 444 VGALLQGRAAHARLAPAGFEKEVEVGVALVNMYGKCGSLEDALGTFAKLERKTVVTWTVA 503

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           + A        E LR++ +M+ +GV P+ ++    +  CS    L EG+   +++I+   
Sbjct: 504 MLALAHHGEFRETLRLFTEMELDGVAPDSVALLAALFACSHSGKLKEGRSYFTNMIQDYG 563

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFD 296
           V   +   + +VD     G L  A++  D +P +   ++W ++++    +  ++D
Sbjct: 564 VSPTLAHYDCVVDLLCRTGLLGRAEELIDSMPFEPSAVTWTTLLAACRTHSTLYD 618


>gi|30693150|ref|NP_190486.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75222188|sp|Q5G1T1.1|PP272_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g49170, chloroplastic; AltName: Full=Protein EMBRYO
           DEFECTIVE 2261; Flags: Precursor
 gi|58013018|gb|AAW62962.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|58013020|gb|AAW62963.1| embryo-defective 2261 [Arabidopsis thaliana]
 gi|332644986|gb|AEE78507.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 184/628 (29%), Positives = 325/628 (51%), Gaps = 22/628 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           N  I  + KSG    A+ +F+ M     RD+V+++ +++  G       A+ ++ E +  
Sbjct: 101 NSLISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLEL 160

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVR 163
           G+  +   +++V+  CSN+ F   G      ++  G F  ++ +G  L+D++++   S  
Sbjct: 161 GLVPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFE 220

Query: 164 -ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD++ E N+ TW LM+    ++  P E +R +  M   G E +  +   +   C+
Sbjct: 221 NAYKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACA 280

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVI 279
               L  GKQLHS  I+ G VD    V  +LVD Y+ C   GS+ + +K FD +    V+
Sbjct: 281 ELENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVM 337

Query: 280 SWNSIVSIY-ADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           SW ++++ Y  + +L  +A+ LF  M       P+  +F           +   GKQ+ G
Sbjct: 338 SWTALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLG 397

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
              K G    S  V +++  M+ K + +E +   FES   ++L   N+ +     + N +
Sbjct: 398 QAFKRGLASNS-SVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFE 456

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAV 454
            A ++   + +  +G+   T ++ L     S  AN+GS R    +H   +K G   N  V
Sbjct: 457 QAFKLLSEITERELGVSAFTFASLL-----SGVANVGSIRKGEQIHSQVVKLGLSCNQPV 511

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+  YS+CG I+ + +VF  + + NV+ +TS++ G++++G     L+    MI+ G+
Sbjct: 512 CNALISMYSKCGSIDTASRVFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGV 571

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P++VT++ +L+ C+H G+V EG   FNSM   + I    +HY+CM+D+L RAG+L  A 
Sbjct: 572 KPNEVTYVAILSACSHVGLVSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAF 631

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E +   P   D ++W + L +CRVH N  +G+  A  ++EL+P + A Y Q+SN Y+  G
Sbjct: 632 EFINTMPFQADVLVWRTFLGACRVHSNTELGKLAARKILELDPNEPAAYIQLSNIYACAG 691

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEV 662
           ++E S ++R     R L ++ G S IEV
Sbjct: 692 KWEESTEMRRKMKERNLVKEGGCSWIEV 719



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 119/533 (22%), Positives = 245/533 (45%), Gaps = 17/533 (3%)

Query: 92  KQALYLYDEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           + A+   D M   GI+   S TFSS+L  C  A  +  G  +H R++      +  + + 
Sbjct: 43  RGAVSALDLMARDGIRPMDSVTFSSLLKSCIRARDFRLGKLVHARLIEFDIEPDSVLYNS 102

Query: 151 LVDLYMRMGPSVRALDLFDELP---ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
           L+ LY + G S +A D+F+ +    +R++ +W+ M+  +    R  + ++++ +    G+
Sbjct: 103 LISLYSKSGDSAKAEDVFETMRRFGKRDVVSWSAMMACYGNNGRELDAIKVFVEFLELGL 162

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD-FYSACGSLIEA 266
            PN   +  ++R CS    +  G+     ++K G  + ++ V  +L+D F     S   A
Sbjct: 163 VPNDYCYTAVIRACSNSDFVGVGRVTLGFLMKTGHFESDVCVGCSLIDMFVKGENSFENA 222

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
            K FD +   +V++W  +++         +A+  F  M L        +     +  +  
Sbjct: 223 YKVFDKMSELNVVTWTLMITRCMQMGFPREAIRFFLDMVLSGFESDKFTLSSVFSACAEL 282

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV---IESSVAVFESAPGRSLECC 383
            N+  GKQ+H +  + G       V+ +L DMY KC+    ++    VF+     S+   
Sbjct: 283 ENLSLGKQLHSWAIRSGLVDD---VECSLVDMYAKCSADGSVDDCRKVFDRMEDHSVMSW 339

Query: 384 NSLMTSLLHSGNI-KDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
            +L+T  + + N+  +A+ +F  M+ +G +  +  T S+  KA    +   +G   L   
Sbjct: 340 TALITGYMKNCNLATEAINLFSEMITQGHVEPNHFTFSSAFKACGNLSDPRVGKQVLGQ- 398

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
            A K G  SN +V+ S++  + +   +E + + FE +   N+V + + ++G  RN    +
Sbjct: 399 -AFKRGLASNSSVANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQ 457

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A  +L  + +R L     TF  +L+G  + G +++G+ + + +  + G+  ++   + +I
Sbjct: 458 AFKLLSEITERELGVSAFTFASLLSGVANVGSIRKGEQIHSQVVKL-GLSCNQPVCNALI 516

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
            M  + G +D A  +        + + W+S++     HG  I      N ++E
Sbjct: 517 SMYSKCGSIDTASRVFNFME-NRNVISWTSMITGFAKHGFAIRVLETFNQMIE 568



 Score =  107 bits (268), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/240 (27%), Positives = 123/240 (51%), Gaps = 1/240 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  FVKS  +  A++ F+ +  +++V+YN  + G  +  + +QA  L  E+    +
Sbjct: 411 ANSVISMFVKSDRMEDAQRAFESLSEKNLVSYNTFLDGTCRNLNFEQAFKLLSEITEREL 470

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             SA TF+S+LS  +N G   +G QIH +V+ LG   N  + + L+ +Y + G    A  
Sbjct: 471 GVSAFTFASLLSGVANVGSIRKGEQIHSQVVKLGLSCNQPVCNALISMYSKCGSIDTASR 530

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F+ +  RN+ +W  M+  F +      VL  +N+M  EGV+PN +++  ++  CS   L
Sbjct: 531 VFNFMENRNVISWTSMITGFAKHGFAIRVLETFNQMIEEGVKPNEVTYVAILSACSHVGL 590

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
           + EG +  + + +   +   +     +VD     G L +A +  + +P   DV+ W + +
Sbjct: 591 VSEGWRHFNSMYEDHKIKPKMEHYACMVDLLCRAGLLTDAFEFINTMPFQADVLVWRTFL 650


>gi|449437962|ref|XP_004136759.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 591

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 156/491 (31%), Positives = 274/491 (55%), Gaps = 8/491 (1%)

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           L+  N ++R+    S     +   N+M   G+EP+G +   +++  ++   + EG+Q+H+
Sbjct: 75  LSLCNAIIRSISRNSINLSPMEFLNEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHA 134

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
             IK G V  N++V+N L+  YS CGS+ + +K FD  P  D++SW +++  +    L  
Sbjct: 135 RSIKTGMVGFNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYS 194

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
            A+E F  M   R R   R+ V  L+  S  G++  G+++H Y+         V V +AL
Sbjct: 195 RAVEAFMEMCDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNAL 254

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMY KC+ + S+  VF+  P +++   N++++ L + G  ++A++ F  M D+G+  DE
Sbjct: 255 LDMYLKCDDLNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDE 314

Query: 416 VTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           VTL   L     ++ ANLG     + +H    ++   ++  V  +L+D Y++CG I+ + 
Sbjct: 315 VTLVGVL-----NSCANLGVLEIGKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAF 369

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           +VFE +   +V  +T+++ G + +G    A  +   M + G+ P++VTFL +L  C+H G
Sbjct: 370 RVFESMKRRDVYSYTAMIFGLALHGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGG 429

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +V EG+  F  M   Y +    +HY CMID+LGRAG++ +AEE++ +     D     +L
Sbjct: 430 LVAEGKKYFFQMSDKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGAL 489

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L +CR+HGN  IG  V   L EL+P +   Y  ++N YS +  ++ +++IR+T   +K+ 
Sbjct: 490 LGACRIHGNVDIGESVMQKLTELDPDEEGTYILMTNLYSSVHRWKDALKIRKTMKNKKMR 549

Query: 653 RDIGHSLIEVN 663
           +  G SLIEV+
Sbjct: 550 KTPGCSLIEVD 560



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/331 (29%), Positives = 161/331 (48%), Gaps = 6/331 (1%)

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMR 157
           +EM+  G++    T   VL   +      EG QIH R +  G  G N+Y+ + L+ LY  
Sbjct: 99  NEMLVVGLEPDGFTIPLVLKALALIQGIREGQQIHARSIKTGMVGFNVYVSNTLMRLYSV 158

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G       +FDE P R+L +W  +++AF +       +  + +M    +  +G +   +
Sbjct: 159 CGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEMCDLRLRADGRTLVVV 218

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  CS    L+ G+++HS++     +  ++FV NAL+D Y  C  L  A K FD +PV +
Sbjct: 219 LSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFDEMPVKN 278

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V++WN+++S  A      +AL+ F  MQ    +P   + V  LN  +  G +  GK +H 
Sbjct: 279 VVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEIGKWVHA 338

Query: 338 YVTKLGFDH--GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           Y+ +   +H      V +AL DMY KC  I+ +  VFES   R +    +++  L   G 
Sbjct: 339 YMRR---NHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLALHGE 395

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
              A ++F  M   GI  +EVT    L A S
Sbjct: 396 ANWAFQVFSEMFRVGIEPNEVTFLGLLMACS 426



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 182/364 (50%), Gaps = 17/364 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
            N+Y SN  +  +   G ++  +K+FDE P RD+V++  LI    K     +A+  + EM
Sbjct: 144 FNVYVSNTLMRLYSVCGSIHDVQKVFDECPHRDLVSWTTLIQAFTKAGLYSRAVEAFMEM 203

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGP 160
               ++    T   VLS CSN G    G ++H  +   +    ++++G+ L+D+Y++   
Sbjct: 204 CDLRLRADGRTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDD 263

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FDE+P +N+ TWN M+       R  E L  +  M+ +GV+P+ ++   ++  
Sbjct: 264 LNSAYKVFDEMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNS 323

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+   +L+ GK +H++ ++   +  + FV NAL+D Y+ CGS+ EA + F+ +   DV S
Sbjct: 324 CANLGVLEIGKWVHAY-MRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYS 382

Query: 281 WNSIV---SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           + +++   +++ + +  F      FR+ +    P+  +F+  L   S  G V  GK+   
Sbjct: 383 YTAMIFGLALHGEANWAFQVFSEMFRVGI---EPNEVTFLGLLMACSHGGLVAEGKK--- 436

Query: 338 YVTKLGFDHGSVHVQSA----LTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLH 392
           Y  ++  D   +  Q+     + D+ G+  +++ +  +      R  +  C +L+ +   
Sbjct: 437 YFFQMS-DKYKLRPQAEHYGCMIDLLGRAGLVKEAEEIIHKMEIRPDVFACGALLGACRI 495

Query: 393 SGNI 396
            GN+
Sbjct: 496 HGNV 499



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 60/224 (26%), Positives = 118/224 (52%), Gaps = 2/224 (0%)

Query: 11  RTITTLAPTCTSIVPLSSSLLLDSYCQP--NPQLNIYSSNRTIDDFVKSGHLNSAKKLFD 68
           RT+  +   C+++  L+    + SY +   + + +++  N  +D ++K   LNSA K+FD
Sbjct: 213 RTLVVVLSACSNLGDLNLGQKVHSYIRHYIDMKADVFVGNALLDMYLKCDDLNSAYKVFD 272

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           EMP +++VT+N +ISG       ++AL  +  M   G+K    T   VL+ C+N G    
Sbjct: 273 EMPVKNVVTWNAMISGLAYQGRYREALDTFRMMQDKGVKPDEVTLVGVLNSCANLGVLEI 332

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  +H  +       + ++G+ L+D+Y + G    A  +F+ +  R++ ++  M+     
Sbjct: 333 GKWVHAYMRRNHILADKFVGNALLDMYAKCGSIDEAFRVFESMKRRDVYSYTAMIFGLAL 392

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
               +   +++++M   G+EPN ++F  ++  CS G L+ EGK+
Sbjct: 393 HGEANWAFQVFSEMFRVGIEPNEVTFLGLLMACSHGGLVAEGKK 436


>gi|302798571|ref|XP_002981045.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
 gi|300151099|gb|EFJ17746.1| hypothetical protein SELMODRAFT_334 [Selaginella moellendorffii]
          Length = 833

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 178/591 (30%), Positives = 312/591 (52%), Gaps = 13/591 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-T 112
           + + G L SA+++F  MP R++V++N +++ C    H  +A+ L+  MV+  + E    +
Sbjct: 246 YGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVS 305

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           F +VL+  +      EG +IH  +        + + + LV +Y R G    A  +F  + 
Sbjct: 306 FITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAME 365

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            R+L +WN M+ A+ +     EV+ ++++M+AE V P+ ++F   +  C+    LD G+ 
Sbjct: 366 RRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRDLDSGRT 425

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGS-------LIEAKKS-FDFIPVDDVISWNSI 284
           +H   ++ G+    I VANA +  YS+C S       L+E     F+ +   DVISWN++
Sbjct: 426 VHHLSVESGFGSC-ISVANATMHLYSSCSSSSSSSSSLMEVVAGIFESMAARDVISWNTM 484

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y      F AL +F RM L   R +  +F+  L+       +  G+ IH  V     
Sbjct: 485 ITGYVQAGDSFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAFLRQGETIHRRVINQTP 544

Query: 345 DHGSVH-VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           +  S   V +A+ +MYGKC  ++++  +FE    R+L   NS++++    G  + A ++ 
Sbjct: 545 ELSSDPIVAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLS 604

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M  EG+  D VT  T L A     +   G  +++H   I SG E +  V+ +L++ YS
Sbjct: 605 ERMRREGVLPDRVTFITLLNACVAGGAVRHG--KMIHARIIDSGLEKDTVVANALVNFYS 662

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG+++ +  +F  +   +VV +  I+ G++ NG  REAL  + +M Q G+ PD +TFL 
Sbjct: 663 KCGNLDTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLT 722

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L+  +H+G +++G   F SM   + ++   +HY CMID+LGRAG +  AE  +      
Sbjct: 723 ILSASSHAGFLRQGGDDFVSMAVDHELERGVEHYGCMIDLLGRAGRIGDAEYFVSAMRDE 782

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
              + W +LL +C VHG+E   +RVA  ++E+ P   + Y  +SN Y+  G
Sbjct: 783 DKEVSWMTLLSACEVHGDEERAKRVAGSIVEMNPQHSSAYVALSNLYATCG 833



 Score =  226 bits (575), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 150/569 (26%), Positives = 292/569 (51%), Gaps = 16/569 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  NR ++ + +   L+ A+K+FD M  RD+V++  +IS   +  H +QAL L+ EM 
Sbjct: 32  SLFFGNRLVNMYRRCSSLDEARKVFDRMRERDVVSWTAMISAYAQTGHQRQALDLFTEMA 91

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPS 161
              +  +  TF ++L  C +  F  +G QIH RV +L     ++ + + ++ +Y +   +
Sbjct: 92  GSSLDPNRVTFLALLEACDSPEFLEDGKQIHARVSALQLLESDVPVANAVMGMYRKCERA 151

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A+ +F E+ ER+L +WN  + A  E       L +   M+ EG+ P+ ++F   +  C
Sbjct: 152 DLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGMAPDKVTFVSALNAC 211

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                L  G+ +H+ V++ G ++ ++ +  ALV  Y  CG L  A++ F  +P  +V+SW
Sbjct: 212 IGSRSLSNGRLIHALVLERG-MEGDVVLGTALVTMYGRCGCLESAREIFHRMPERNVVSW 270

Query: 282 NSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           N++V+         +A+ELF RM  +    P+  SF+  LN  +    +  G++IH  + 
Sbjct: 271 NAMVASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQ 330

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           +       + V +AL  MYG+C  +  +  VF +   R L   N+++++   SG  ++ V
Sbjct: 331 ERQL-LSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAMISAYAQSGLAREVV 389

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M  E +  D +T    L A   +   +L S R +H  +++SGF S I+V+ + M 
Sbjct: 390 NLFHRMRAERVPPDRITFLMALDA--CAEIRDLDSGRTVHHLSVESGFGSCISVANATMH 447

Query: 461 AYSRCGH--------IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            YS C          +E+   +FE + + +V+ + +++ GY + G    AL + + M+  
Sbjct: 448 LYSSCSSSSSSSSSLMEVVAGIFESMAARDVISWNTMITGYVQAGDSFSALSIFKRMLLE 507

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSCMIDMLGRAGILD 571
           G+  ++VTF+ +L+ C+    +++G+ +    +     + +D    + +++M G+ G LD
Sbjct: 508 GIRGNQVTFMSLLSVCDSRAFLRQGETIHRRVINQTPELSSDPIVAAAIVNMYGKCGELD 567

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            A  L + T    +   W+S++ +  +HG
Sbjct: 568 TARHLFEDTS-HRNLASWNSMISAYALHG 595



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 148/544 (27%), Positives = 271/544 (49%), Gaps = 20/544 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  +  + K    + A  +F EM  RD++++N  I+   +       L L   M   G+
Sbjct: 138 ANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIAANAESGDYTFTLALLKSMQLEGM 197

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                TF S L+ C  +   + G  IH  VL  G   ++ +G+ LV +Y R G    A +
Sbjct: 198 APDKVTFVSALNACIGSRSLSNGRLIHALVLERGMEGDVVLGTALVTMYGRCGCLESARE 257

Query: 167 LFDELPERNLATWNLMLRAFCEL-SRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIG 224
           +F  +PERN+ +WN M+ A C L +   E + ++ +M A   VEP  +SF  ++   +  
Sbjct: 258 IFHRMPERNVVSWNAMV-ASCTLNAHFAEAIELFKRMVAVAMVEPTRVSFITVLNAVTTP 316

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L EG+++H+ +I+   +   I VANALV  Y  CG + +A++ F  +   D++SWN++
Sbjct: 317 EALAEGRRIHA-MIQERQLLSQIEVANALVTMYGRCGGVGDAERVFSAMERRDLVSWNAM 375

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S YA   L  + + LF RM+  R  P   +F+  L+  +   ++  G+ +H    + GF
Sbjct: 376 ISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEIRDLDSGRTVHHLSVESGF 435

Query: 345 DHGS-VHVQSALTDMY--------GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
             GS + V +A   +Y           +++E    +FES   R +   N+++T  + +G+
Sbjct: 436 --GSCISVANATMHLYSSCSSSSSSSSSLMEVVAGIFESMAARDVISWNTMITGYVQAGD 493

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIA 453
              A+ +F  M+ EGI  ++VT  + L      A    G    +H   I    E  S+  
Sbjct: 494 SFSALSIFKRMLLEGIRGNQVTFMSLLSVCDSRAFLRQGET--IHRRVINQTPELSSDPI 551

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V+ ++++ Y +CG ++ +  +FE     N+  + S+++ Y+ +G   +A D+ E M + G
Sbjct: 552 VAAAIVNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREG 611

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           ++PD+VTF+ +L  C   G V+ G+++   +    G++ D    + +++   + G LD A
Sbjct: 612 VLPDRVTFITLLNACVAGGAVRHGKMIHARIID-SGLEKDTVVANALVNFYSKCGNLDTA 670

Query: 574 EELL 577
             L 
Sbjct: 671 TSLF 674



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 116/439 (26%), Positives = 224/439 (51%), Gaps = 5/439 (1%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           ++ ++  C  +G   +G ++H  V       +L+ G+ LV++Y R      A  +FD + 
Sbjct: 1   YARLMRACGISGALEQGRRVHGHVQRHADDRSLFFGNRLVNMYRRCSSLDEARKVFDRMR 60

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           ER++ +W  M+ A+ +     + L ++ +M    ++PN ++F  ++  C     L++GKQ
Sbjct: 61  ERDVVSWTAMISAYAQTGHQRQALDLFTEMAGSSLDPNRVTFLALLEACDSPEFLEDGKQ 120

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H+ V  L  ++ ++ VANA++  Y  C     A   F  +   D+ISWN+ ++  A+  
Sbjct: 121 IHARVSALQLLESDVPVANAVMGMYRKCERADLAMAVFSEMRERDLISWNNAIAANAESG 180

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
                L L   MQL    P   +FV  LN    + ++  G+ IH  V + G + G V + 
Sbjct: 181 DYTFTLALLKSMQLEGMAPDKVTFVSALNACIGSRSLSNGRLIHALVLERGME-GDVVLG 239

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL  MYG+C  +ES+  +F   P R++   N+++ S   + +  +A+E+F  MV   + 
Sbjct: 240 TALVTMYGRCGCLESAREIFHRMPERNVVSWNAMVASCTLNAHFAEAIELFKRMV--AVA 297

Query: 413 LDEVTLSTTLKAL-SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
           + E T  + +  L +V+    L   R +H    +    S I V+ +L+  Y RCG +  +
Sbjct: 298 MVEPTRVSFITVLNAVTTPEALAEGRRIHAMIQERQLLSQIEVANALVTMYGRCGGVGDA 357

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            +VF  +   ++V + ++++ Y+++G+ RE +++   M    + PD++TFL  L  C   
Sbjct: 358 ERVFSAMERRDLVSWNAMISAYAQSGLAREVVNLFHRMRAERVPPDRITFLMALDACAEI 417

Query: 532 GMVKEGQLVFN-SMKSVYG 549
             +  G+ V + S++S +G
Sbjct: 418 RDLDSGRTVHHLSVESGFG 436



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 47/180 (26%), Positives = 87/180 (48%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ++ + K G L++A+ LF++   R++ ++N +IS        +QA  L + M   G+    
Sbjct: 557 VNMYGKCGELDTARHLFEDTSHRNLASWNSMISAYALHGRAEQAFDLSERMRREGVLPDR 616

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF ++L+ C   G    G  IH R++  G   +  + + LV+ Y + G    A  LF  
Sbjct: 617 VTFITLLNACVAGGAVRHGKMIHARIIDSGLEKDTVVANALVNFYSKCGNLDTATSLFGA 676

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           L  R++ +WN ++  F       E L+    M+ +GV P+ ++F  ++   S    L +G
Sbjct: 677 LDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSASSHAGFLRQG 736



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/130 (26%), Positives = 64/130 (49%), Gaps = 1/130 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M    +LP   T  TL   C +   +    ++ +       + +   +N  ++ + K G+
Sbjct: 607 MRREGVLPDRVTFITLLNACVAGGAVRHGKMIHARIIDSGLEKDTVVANALVNFYSKCGN 666

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L++A  LF  +  RD+V++N +I+G     H ++AL     M   G++  A TF ++LS 
Sbjct: 667 LDTATSLFGALDYRDVVSWNGIIAGFAHNGHAREALKSMWLMQQDGVRPDAITFLTILSA 726

Query: 120 CSNAGFYTEG 129
            S+AGF  +G
Sbjct: 727 SSHAGFLRQG 736


>gi|218546775|sp|Q9SII7.2|PP159_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g17210
          Length = 736

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 179/622 (28%), Positives = 333/622 (53%), Gaps = 23/622 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N   D ++K G L S  + FD M +RD V++N+++ G   +   ++ L+ + ++   G +
Sbjct: 86  NSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRVWGFE 145

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            + ST   V+  C +  F  +G +IH  V+  GF     + + ++ +Y     S+ A  L
Sbjct: 146 PNTSTLVLVIHACRSLWF--DGEKIHGYVIRSGFCGISSVQNSILCMYAD-SDSLSARKL 202

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGML 226
           FDE+ ER++ +W++++R++ +   P   L+++ +M  E   EP+ ++   +++ C++   
Sbjct: 203 FDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKACTVMED 262

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +D G+ +H   I+ G+   ++FV N+L+D YS    +  A + FD     +++SWNSI++
Sbjct: 263 IDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSWNSILA 322

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            +       +ALE+F  M          + V  L            K IHG + + G++ 
Sbjct: 323 GFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPLPCKSIHGVIIRRGYES 382

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V + S+L D Y  C++++ +  V +S   + +  C+++++ L H+G   +A+ +F  M
Sbjct: 383 NEVAL-SSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAISIFCHM 441

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN-IAVSCSLMDAYSRC 465
            D     + +T+ + L A SVSA  +L + +  H  AI+     N I+V  S++DAY++C
Sbjct: 442 RDTP---NAITVISLLNACSVSA--DLRTSKWAHGIAIRRSLAINDISVGTSIVDAYAKC 496

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G IE++ + F++I   N++ +T I++ Y+ NG+  +AL + + M Q+G  P+ VT+L  L
Sbjct: 497 GAIEMARRTFDQITEKNIISWTVIISAYAINGLPDKALALFDEMKQKGYTPNAVTYLAAL 556

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADR----QHYSCMIDMLGRAGILDKAEELLQQTP 581
           + CNH G+VK+G ++F SM     ++ D     QHYSC++DML RAG +D A EL++  P
Sbjct: 557 SACNHGGLVKKGLMIFKSM-----VEEDHKPSLQHYSCIVDMLSRAGEIDTAVELIKNLP 611

Query: 582 GG--GDCMMWSSLLRSCRVHGNE-IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
                    W ++L  CR    + II   V   ++ELEP+  + Y   S+ ++    +E 
Sbjct: 612 EDVKAGASAWGAILSGCRNRFKKLIITSEVVAEVLELEPLCSSGYLLASSTFAAEKSWED 671

Query: 639 SMQIRETALARKLTRDIGHSLI 660
              +R     RK+    G+S++
Sbjct: 672 VAMMRRLVKERKVRVVAGYSMV 693



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 126/518 (24%), Positives = 249/518 (48%), Gaps = 17/518 (3%)

Query: 86  GKFRHPKQALYLYDEMVSHGIK-ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
           GK+R   + +  Y E+   G++      F  V   C+   +  +G  I   +L  GF   
Sbjct: 25  GKWR---EVVSGYSEIQRAGVQFNDPFVFPIVFKACAKLSWLFQGRCIQASLLKRGFESF 81

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           + +G+ + D YM+ G     L  FD +  R+  +WN+++    +    +E L  ++K++ 
Sbjct: 82  VSVGNSIADFYMKCGDLCSGLREFDCMNSRDSVSWNVIVFGLLDYGFEEEGLWWFSKLRV 141

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
            G EPN  +   ++  C    L  +G+++H +VI+ G+  ++  V N+++  Y+   SL 
Sbjct: 142 WGFEPNTSTLVLVIHACR--SLWFDGEKIHGYVIRSGFCGIS-SVQNSILCMYADSDSL- 197

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFA 323
            A+K FD +   DVISW+ ++  Y         L+LF  M    +  P   +    L   
Sbjct: 198 SARKLFDEMSERDVISWSVVIRSYVQSKEPVVGLKLFKEMVHEAKTEPDCVTVTSVLKAC 257

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +   ++  G+ +HG+  + GFD   V V ++L DMY K   ++S+  VF+    R++   
Sbjct: 258 TVMEDIDVGRSVHGFSIRRGFDLADVFVCNSLIDMYSKGFDVDSAFRVFDETTCRNIVSW 317

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           NS++   +H+    +A+EMF  MV E + +DEVT+ + L+            C+ +H   
Sbjct: 318 NSILAGFVHNQRYDEALEMFHLMVQEAVEVDEVTVVSLLRVCKFFEQPL--PCKSIHGVI 375

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           I+ G+ESN     SL+DAY+ C  ++ +  V + +   +VV  +++++G +  G   EA+
Sbjct: 376 IRRGYESNEVALSSLIDAYTSCSLVDDAGTVLDSMTYKDVVSCSTMISGLAHAGRSDEAI 435

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMID 562
            +   M      P+ +T + +L  C+ S  ++  +     +++    I+ D    + ++D
Sbjct: 436 SIFCHMRD---TPNAITVISLLNACSVSADLRTSKWAHGIAIRRSLAIN-DISVGTSIVD 491

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
              + G ++ A     Q     + + W+ ++ +  ++G
Sbjct: 492 AYAKCGAIEMARRTFDQIT-EKNIISWTVIISAYAING 528


>gi|302768409|ref|XP_002967624.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
 gi|300164362|gb|EFJ30971.1| hypothetical protein SELMODRAFT_169299 [Selaginella moellendorffii]
          Length = 795

 Score =  283 bits (723), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 180/641 (28%), Positives = 329/641 (51%), Gaps = 16/641 (2%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           +  SLL D   +P+  L     N  I  +++ G  + A  +FD M  +++V +  LIS  
Sbjct: 37  MRESLLQDE--RPDESL---LENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLISAF 91

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF-YTEGIQIHCRVLSLGFGLN 144
               H   A+ L+ +M+  G+     TF+S+L   S       EG ++H  ++  G+  +
Sbjct: 92  TFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWSGRERNLDEGKRVHSHIMQTGYEGD 151

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
             + + +V++Y + G   +A ++FD + + N+ +W +++ A+ +     EVLR+ ++M  
Sbjct: 152 RMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQ 211

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
            GV+P+G +F  ++  C+    L+E K LH+  I    +D +  V  AL++ Y  CG+L 
Sbjct: 212 AGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKCGALE 271

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
           EA   F  I   D++SW+S+++ +A       A++L   M L   RP+  +FV  L   +
Sbjct: 272 EAFGVFVQIDNKDIVSWSSMIAAFAQSGQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVT 331

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
                 +GK+IH  + + G+    V + SAL  MY     +E++ ++FES+  R +   +
Sbjct: 332 SLKAFQYGKEIHARIVQAGYSD-DVCLTSALVKMYCNWGWVETARSIFESSRERDVVSWS 390

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHC 441
           S++     + +   A+ +F  M  +G+  + VT  +     ++ A A +G+ R    LH 
Sbjct: 391 SMIAGYSQNESPARALSLFREMEVDGVQPNSVTFVS-----AIDACAGVGALRRGTQLHE 445

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
                G + ++ V+ +L++ Y +CG +E +  VF  +   N++ +TSI   Y +NG G  
Sbjct: 446 RVRCLGLDKDVPVATALVNLYGKCGRLEEAEAVFLGMKKKNLLTWTSIAMAYGQNGHGSR 505

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           +L +L  M  +G+ PD + F+ +L  CN++G + +G   +N M   +GI    +H  CM+
Sbjct: 506 SLKLLHGMELQGMKPDGIVFVAILVSCNYAGQMSKGLHYYNLMTQDFGIAPAVEHCGCMV 565

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621
           D+LGRAG L+ AE+L+  T      + W  LL +C+ H +     R A  + +LEP +  
Sbjct: 566 DILGRAGKLEAAEQLI-NTMKFESSLAWMMLLTACKAHNDTARAARAAEKIFQLEPKNAT 624

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            Y  +S+ +   G +E + + R     R + R +G S IE+
Sbjct: 625 PYVLLSSVFCAAGSWEAAEETRRRMDGRGVQRLLGRSSIEI 665



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 123/484 (25%), Positives = 241/484 (49%), Gaps = 12/484 (2%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL-----VDLY 155
           M +  I+   S  +++L+ CS+     EG ++H  V+      +      L     + +Y
Sbjct: 1   MEAREIQAEISACAAILTACSDLRALPEGKRVHGLVMRESLLQDERPDESLLENIVIQMY 60

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           +R G +  ALD+FD + ++N+  W  ++ AF       + + ++ KM   GV P+ ++F 
Sbjct: 61  LRCGCTDLALDVFDRMKDQNVVAWTSLISAFTFAGHFGDAMVLFRKMLLSGVSPDRITFT 120

Query: 216 -YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             +++       LDEGK++HSH+++ G+ + +  V N +V+ Y  CG + +A   FD I 
Sbjct: 121 SILLKWSGRERNLDEGKRVHSHIMQTGY-EGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQ 179

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             +V SW  I++ YA      + L L  RM     +P   +F   L   +  G +   K 
Sbjct: 180 DPNVFSWTIIIAAYAQNGHCMEVLRLLSRMNQAGVKPDGYTFTTVLGACTAVGALEEAKI 239

Query: 335 IH-GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           +H   ++  G D  +  V +AL ++YGKC  +E +  VF     + +   +S++ +   S
Sbjct: 240 LHAATISSTGLDRDAA-VGTALINLYGKCGALEEAFGVFVQIDNKDIVSWSSMIAAFAQS 298

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G  K A+++   M  EG+  + VT    L+A++   +   G  + +H   +++G+  ++ 
Sbjct: 299 GQAKSAIQLLMLMDLEGVRPNNVTFVNVLEAVTSLKAFQYG--KEIHARIVQAGYSDDVC 356

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           ++ +L+  Y   G +E +  +FE     +VV ++S++ GYS+N     AL +   M   G
Sbjct: 357 LTSALVKMYCNWGWVETARSIFESSRERDVVSWSSMIAGYSQNESPARALSLFREMEVDG 416

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           + P+ VTF+  +  C   G ++ G  +   ++ + G+D D    + ++++ G+ G L++A
Sbjct: 417 VQPNSVTFVSAIDACAGVGALRRGTQLHERVRCL-GLDKDVPVATALVNLYGKCGRLEEA 475

Query: 574 EELL 577
           E + 
Sbjct: 476 EAVF 479



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 148/291 (50%), Gaps = 7/291 (2%)

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTD----MYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           GK++HG V +          +S L +    MY +C   + ++ VF+    +++    SL+
Sbjct: 29  GKRVHGLVMRESLLQDERPDESLLENIVIQMYLRCGCTDLALDVFDRMKDQNVVAWTSLI 88

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           ++   +G+  DA+ +F  M+  G+  D +T ++ L   S     NL   + +H   +++G
Sbjct: 89  SAFTFAGHFGDAMVLFRKMLLSGVSPDRITFTSILLKWS-GRERNLDEGKRVHSHIMQTG 147

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           +E +  V   +++ Y +CG +E +  VF+ I  PNV  +T I+  Y++NG   E L +L 
Sbjct: 148 YEGDRMVMNLVVEMYGKCGDVEQAGNVFDSIQDPNVFSWTIIIAAYAQNGHCMEVLRLLS 207

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M Q G+ PD  TF  VL  C   G ++E +++  +  S  G+D D    + +I++ G+ 
Sbjct: 208 RMNQAGVKPDGYTFTTVLGACTAVGALEEAKILHAATISSTGLDRDAAVGTALINLYGKC 267

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           G L++A  +  Q     D + WSS++ +    G      ++  +LM+LE V
Sbjct: 268 GALEEAFGVFVQID-NKDIVSWSSMIAAFAQSGQAKSAIQLL-MLMDLEGV 316


>gi|147767942|emb|CAN73397.1| hypothetical protein VITISV_016435 [Vitis vinifera]
          Length = 929

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 181/647 (27%), Positives = 323/647 (49%), Gaps = 68/647 (10%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D F+K G ++ A++ F+E+  +D+  +N+++SG       K+AL    +M   G+K   
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ 291

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T+++++S  + +G + E  +                       ++ MG       L D 
Sbjct: 292 VTWNAIISGYAQSGQFEEASK----------------------YFLEMG------GLKDF 323

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            P  N+ +W  ++    +     E L ++ KM  EGV+PN ++    V  C+   LL  G
Sbjct: 324 KP--NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 381

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA- 289
           +++H + IK+  +D ++ V N+LVD+Y+ C S+  A++ F  I   D++SWN++++ YA 
Sbjct: 382 REIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYAL 441

Query: 290 -------------------DYDLIF---------------DALELFFRMQLCRKRPSIRS 315
                              + D+I                 ALE F RM      P+  +
Sbjct: 442 RGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTT 501

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
               L    +  N+  GK+IHGYV +   +  S  V SAL  MY  C+ +E + +VF   
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIEL-STGVGSALISMYSGCDSLEVACSVFSEL 560

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
             R +   NS++++   SG   +A+++   M    + ++ VT+ + L A S  A+   G 
Sbjct: 561 STRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG- 619

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + +H   I+ G ++   +  SL+D Y RCG I+ S ++F+ +P  ++V +  +++ Y  
Sbjct: 620 -KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 678

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +G G +A+++ +     GL P+ +TF  +L+ C+HSG+++EG   F  MK+ Y +D   +
Sbjct: 679 HGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 738

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
            Y+CM+D+L RAG  ++  E +++ P   +  +W SLL +CR+H N  +    A  L EL
Sbjct: 739 QYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL 798

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           EP     Y  ++N YS  G +E + +IR     R +T+  G S IEV
Sbjct: 799 EPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEV 845



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 126/596 (21%), Positives = 260/596 (43%), Gaps = 86/596 (14%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSH 104
           +R ++ + ++G +  A+++FD+M  R++ ++  ++    G G +    +  YL   MV+ 
Sbjct: 128 SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYL---MVNE 184

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++     F  V   CS    Y  G  ++  +LS+GF  N  +   ++D++++ G    A
Sbjct: 185 GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIA 244

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
              F+E+  +++  WN+M+  +       + L+  + MK  GV+P+ +++          
Sbjct: 245 RRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW---------- 294

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF-------DFIPVDD 277
                                     NA++  Y+  G   EA K F       DF P  +
Sbjct: 295 --------------------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKP--N 326

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V+SW ++++        F+AL +F +M L   +P+  +    ++  +    +  G++IHG
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHG 386

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           Y  K+      + V ++L D Y KC  +E +   F       L   N+++      G+ +
Sbjct: 387 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHE 446

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKAL------------------------SVSASANL 433
           +A+E+   M  +GI  D +T +  +                           + + S  L
Sbjct: 447 EAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL 506

Query: 434 GSC---------RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +C         + +H   +++  E +  V  +L+  YS C  +E++  VF ++ + +VV
Sbjct: 507 AACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV 566

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + SI++  +++G    ALD+L  M    +  + VT +  L  C+    +++G+ +   +
Sbjct: 567 VWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFI 626

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
               G+D      + +IDM GR G + K+  +    P   D + W+ ++    +HG
Sbjct: 627 IRC-GLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHG 680



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 219/475 (46%), Gaps = 46/475 (9%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E    ++S+L  C        G Q+H +++  G  +  ++GS L+++Y + G    A  +
Sbjct: 87  ECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRM 146

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD++ ERN+ +W  ++  +C L   +E ++++  M  EGV P+   F  + + CS     
Sbjct: 147 FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 206

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             GK ++ +++ +G+ + N  V  +++D +  CG +  A++ F+ I   DV  WN +VS 
Sbjct: 207 RVGKDVYDYMLSIGF-EGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSG 265

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y        AL+    M+L   +P                 V +   I GY     F+  
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPD---------------QVTWNAIISGYAQSGQFEEA 310

Query: 348 SVHV--QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           S +      L D   K NV+  +                +L+     +G   +A+ +F  
Sbjct: 311 SKYFLEMGGLKDF--KPNVVSWT----------------ALIAGSEQNGYDFEALSVFRK 352

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIK-SGFESNIAVSCSLMDA 461
           MV EG+  + +T+++     +VSA  NL      R +H   IK    +S++ V  SL+D 
Sbjct: 353 MVLEGVKPNSITIAS-----AVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDY 407

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++C  +E++ + F  I   ++V + +++ GY+  G   EA+++L  M  +G+ PD +T+
Sbjct: 408 YAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITW 467

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
             ++ G    G  K     F  M S+ G+D +    S  +   G+   L   +E+
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRMHSM-GMDPNTTTISGALAACGQVRNLKLGKEI 521



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 174/407 (42%), Gaps = 40/407 (9%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN--IYSSNRTIDDFVKSGHLNSAKK 65
           P   TI +    CT++  L     +  YC    +L+  +   N  +D + K   +  A++
Sbjct: 360 PNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 66  LFDEMPARDMVTYNL-----------------------------------LISGCGKFRH 90
            F  +   D+V++N                                    L++G  ++  
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
            K AL  +  M S G+  + +T S  L+ C        G +IH  VL     L+  +GS 
Sbjct: 480 GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA 539

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           L+ +Y        A  +F EL  R++  WN ++ A  +  R    L +  +M    VE N
Sbjct: 540 LISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 599

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
            ++    +  CS    L +GK++H  +I+ G +D   F+ N+L+D Y  CGS+ ++++ F
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCG-LDTCNFILNSLIDMYGRCGSIQKSRRIF 658

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  D++SWN ++S+Y  +    DA+ LF   +    +P+  +F   L+  S +G + 
Sbjct: 659 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLKPNHITFTNLLSACSHSGLIE 718

Query: 331 FG-KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            G K      T+   D  +V   + + D+  +      ++   E  P
Sbjct: 719 EGWKYFKMMKTEYAMDP-AVEQYACMVDLLSRAGQFNETLEFIEKMP 764



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 79/141 (56%), Gaps = 4/141 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + + G +  ++++FD MP RD+V++N++IS  G       A+ L+    + G+K
Sbjct: 639 NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQXFRTMGLK 698

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRAL 165
            +  TF+++LS CS++G   EG + + +++   + ++  +   + +VDL  R G     L
Sbjct: 699 PNHITFTNLLSACSHSGLIEEGWK-YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 757

Query: 166 DLFDELP-ERNLATWNLMLRA 185
           +  +++P E N A W  +L A
Sbjct: 758 EFIEKMPFEPNAAVWGSLLGA 778


>gi|449451649|ref|XP_004143574.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
 gi|449516723|ref|XP_004165396.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Cucumis sativus]
          Length = 651

 Score =  282 bits (722), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 170/607 (28%), Positives = 311/607 (51%), Gaps = 12/607 (1%)

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           HLN   KL        +  +N  I G     +  +AL L+ ++  +G++ +  TF  +  
Sbjct: 7   HLNCFSKL------STLTWWNSSIRGAVNQGNASKALALFHQLKLNGLQPNNFTFPFLSK 60

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C+     T    IH  V+   F  ++Y+ + +VD+Y++ G    A +LFD++P RN+A+
Sbjct: 61  ACAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAYNLFDKMPVRNIAS 120

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+  F ++   D V  ++  M+  G  P+  +   + R       L   K +H+  I
Sbjct: 121 WNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAKSLRFLKAVHAIGI 180

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI--PVDDVISWNSIVSIYADYDLIFD 296
           + G +D +  V+N  +  YS CG L  AK  F  I       +SWNS+++ YA +    D
Sbjct: 181 ETG-LDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSLIACYAHFGKYVD 239

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A++ +  +     +P   + +  L+   +   + +G  IHG+  +LG D   + + + L 
Sbjct: 240 AVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCD-SDISLINTLI 298

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY +C  I S+  +F+    R+     ++++     G + DA+ +F  M + G   D V
Sbjct: 299 SMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIV 358

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T+ + +     + +  LG    +   A     + ++ V  +L+D Y++CG +  + ++F 
Sbjct: 359 TVLSLISGCGKTGALGLG--HWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFY 416

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            +P+  VV +T+++   + NG  REALD+  ++ + G+ P+ +TFL VL  C H G +++
Sbjct: 417 SLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEK 476

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G+  F  M   YGI+    HYSCMID+LGR G L +A E++Q  P   D  +W +LL +C
Sbjct: 477 GRECFMMMTERYGINPGLDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGAC 536

Query: 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           ++H N  IG  V+  L EL+P     + +++N Y+ +G ++    +R+T  + ++ +  G
Sbjct: 537 KIHNNMEIGEYVSRYLFELQPRVAVSFVEMANIYASVGRWDEVAAMRKTMRSNQMRKSPG 596

Query: 657 HSLIEVN 663
            S+++VN
Sbjct: 597 KSVVQVN 603



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 198/422 (46%), Gaps = 5/422 (1%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAK 64
           L P   T   L+  C  +  L++S ++ ++   +P   +IY     +D +VK G ++ A 
Sbjct: 48  LQPNNFTFPFLSKACAKLSHLTNSQIIHTHVVKSPFYSDIYVQTAMVDMYVKCGKVDDAY 107

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            LFD+MP R++ ++N +I G  +     +   L+  M   G +  A+T   +     +A 
Sbjct: 108 NLFDKMPVRNIASWNAMIIGFSQIGSLDRVFNLFMGMRLVGTRPDAATVIGLTRAVISAK 167

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLATWNLM 182
                  +H   +  G   +  + +  +  Y + G    A  +F  + +  R+  +WN +
Sbjct: 168 SLRFLKAVHAIGIETGLDADTSVSNTWIAAYSKCGELQLAKMVFHGIQKTARSSVSWNSL 227

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  +    +  + ++ Y  +  +G +P+  +   ++  C     L  G  +H H  +LG 
Sbjct: 228 IACYAHFGKYVDAVKSYKGLLCDGFKPDASTIISLLSSCQQPEALIYGFLIHGHGFQLG- 286

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            D +I + N L+  YS CG +  A   FD + +   +SW +++S Y++   + DAL LF 
Sbjct: 287 CDSDISLINTLISMYSRCGDISSATILFDGMSIRTCVSWTAMISGYSEVGRVDDALVLFN 346

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M+   ++P I + +  ++   +TG +  G  I  Y + L      V V +AL DMY KC
Sbjct: 347 AMEETGEKPDIVTVLSLISGCGKTGALGLGHWIDNYAS-LHELKKDVVVCNALIDMYAKC 405

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +  +  +F S P R++    +++ +   +G  ++A+++F  + + GI  + +T    L
Sbjct: 406 GSLNDAREIFYSLPNRTVVSWTAMIAACALNGEFREALDLFSLLSESGIEPNNITFLAVL 465

Query: 423 KA 424
           +A
Sbjct: 466 QA 467



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/325 (24%), Positives = 143/325 (44%), Gaps = 9/325 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   TI +L  +C     L    L+  +  Q     +I   N  I  + + G ++SA  L
Sbjct: 254 PDASTIISLLSSCQQPEALIYGFLIHGHGFQLGCDSDISLINTLISMYSRCGDISSATIL 313

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD M  R  V++  +ISG  +      AL L++ M   G K    T  S++S C   G  
Sbjct: 314 FDGMSIRTCVSWTAMISGYSEVGRVDDALVLFNAMEETGEKPDIVTVLSLISGCGKTGAL 373

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  I           ++ + + L+D+Y + G    A ++F  LP R + +W  M+ A 
Sbjct: 374 GLGHWIDNYASLHELKKDVVVCNALIDMYAKCGSLNDAREIFYSLPNRTVVSWTAMIAAC 433

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                  E L +++ +   G+EPN ++F  +++ C  G  L++G++    + +   ++  
Sbjct: 434 ALNGEFREALDLFSLLSESGIEPNNITFLAVLQACCHGGYLEKGRECFMMMTERYGINPG 493

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV---SIYADYDLIFDALELFF 302
           +   + ++D     G LIEA +    +P+  D   W +++    I+ + ++        F
Sbjct: 494 LDHYSCMIDLLGRKGKLIEALEVIQDMPMKPDEGIWGALLGACKIHNNMEIGEYVSRYLF 553

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTG 327
            +Q    R ++ SFVE  N  +  G
Sbjct: 554 ELQ---PRVAV-SFVEMANIYASVG 574


>gi|356515320|ref|XP_003526349.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 816

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 168/624 (26%), Positives = 325/624 (52%), Gaps = 15/624 (2%)

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE 108
           + I  F K   +  A ++F+ +  +  V Y+ ++ G  K    + A+  Y+ M    +  
Sbjct: 81  KLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNSTLRDAVRFYERMRCDEVMP 140

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
               F+ +L +         G +IH  V++ GF  NL+  + +V+LY +      A  +F
Sbjct: 141 VVYDFTYLLQLSGENLDLRRGREIHGMVITNGFQSNLFAMTAVVNLYAKCRQIEDAYKMF 200

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           + +P+R+L +WN ++  + +       +++  +M+  G +P+ ++   ++   +    L 
Sbjct: 201 ERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQKPDSITLVSVLPAVADLKALR 260

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G+ +H +  + G+ +  + VA A++D Y  CGS+  A+  F  +   +V+SWN+++  Y
Sbjct: 261 IGRSIHGYAFRAGF-EYMVNVATAMLDTYFKCGSVRSARLVFKGMSSRNVVSWNTMIDGY 319

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDH 346
           A      +A   F +M      P+  S +  L+  +  G++  G+ +H  +   K+GFD 
Sbjct: 320 AQNGESEEAFATFLKMLDEGVEPTNVSMMGALHACANLGDLERGRYVHRLLDEKKIGFD- 378

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V ++L  MY KC  ++ + +VF +   +++   N+++     +G + +A+ +F  M
Sbjct: 379 --VSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWNAMILGYAQNGCVNEALNLFCEM 436

Query: 407 VDEGIGLDEVTLS---TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
               I  D  TL    T L  LSV+  A     + +H  AI++  + N+ V  +L+D ++
Sbjct: 437 QSHDIKPDSFTLVSVITALADLSVTRQA-----KWIHGLAIRTLMDKNVFVCTALIDTHA 491

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG I+ + ++F+ +   +V+ + ++++GY  NG GREALD+   M    + P+++TFL 
Sbjct: 492 KCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREALDLFNEMQNGSVKPNEITFLS 551

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           V+A C+HSG+V+EG   F SMK  YG++    HY  M+D+LGRAG LD A + +Q  P  
Sbjct: 552 VIAACSHSGLVEEGMYYFESMKENYGLEPTMDHYGAMVDLLGRAGRLDDAWKFIQDMPVK 611

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +  ++L +CR+H N  +G + A+ L +L+P D   +  ++N Y+    ++   ++R
Sbjct: 612 PGITVLGAMLGACRIHKNVELGEKTADELFDLDPDDGGYHVLLANMYASASMWDKVARVR 671

Query: 644 ETALARKLTRDIGHSLIEV-NSCH 666
                + + +  G SL+E+ N  H
Sbjct: 672 TAMEKKGIQKTPGCSLVELRNEVH 695



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 117/495 (23%), Positives = 241/495 (48%), Gaps = 27/495 (5%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QI   ++  GF       + L+ L+ +      A  +F+ +  +    ++ ML+ + + S
Sbjct: 62  QILPLIIKNGFYNEHLFQTKLISLFCKFNSITEAARVFEPVEHKLDVLYHTMLKGYAKNS 121

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + +R Y +M+ + V P    F Y+++     + L  G+++H  VI  G+   N+F  
Sbjct: 122 TLRDAVRFYERMRCDEVMPVVYDFTYLLQLSGENLDLRRGREIHGMVITNGF-QSNLFAM 180

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            A+V+ Y+ C  + +A K F+ +P  D++SWN++V+ YA       A+++  +MQ   ++
Sbjct: 181 TAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQMQEAGQK 240

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + V  L   +    +  G+ IHGY  + GF++  V+V +A+ D Y KC  + S+  
Sbjct: 241 PDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEY-MVNVATAMLDTYFKCGSVRSARL 299

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF+    R++   N+++     +G  ++A   F  M+DEG+    V++   L      A 
Sbjct: 300 VFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALH-----AC 354

Query: 431 ANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           ANLG     R +H    +     +++V  SL+  YS+C  ++++  VF  +    VV + 
Sbjct: 355 ANLGDLERGRYVHRLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVTWN 414

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKS 546
           +++ GY++NG   EAL++   M    + PD  T + V+       + ++ + +   ++++
Sbjct: 415 AMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAIRT 474

Query: 547 VYGIDADRQHYSC--MIDMLGRAGILDKAE---ELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +     D+  + C  +ID   + G +  A    +L+Q+       + W++++     +G+
Sbjct: 475 L----MDKNVFVCTALIDTHAKCGAIQTARKLFDLMQER----HVITWNAMIDGYGTNGH 526

Query: 602 EIIGRRVANILMELE 616
              GR   ++  E++
Sbjct: 527 ---GREALDLFNEMQ 538



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/453 (22%), Positives = 213/453 (47%), Gaps = 8/453 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q N+++    ++ + K   +  A K+F+ MP RD+V++N +++G  +    ++A+ +  +
Sbjct: 174 QSNLFAMTAVVNLYAKCRQIEDAYKMFERMPQRDLVSWNTVVAGYAQNGFARRAVQVVLQ 233

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G K  + T  SVL   ++      G  IH      GF   + + + ++D Y + G 
Sbjct: 234 MQEAGQKPDSITLVSVLPAVADLKALRIGRSIHGYAFRAGFEYMVNVATAMLDTYFKCGS 293

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F  +  RN+ +WN M+  + +    +E    + KM  EGVEP  +S    +  
Sbjct: 294 VRSARLVFKGMSSRNVVSWNTMIDGYAQNGESEEAFATFLKMLDEGVEPTNVSMMGALHA 353

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L+ G+ +H  ++    +  ++ V N+L+  YS C  +  A   F  +    V++
Sbjct: 354 CANLGDLERGRYVH-RLLDEKKIGFDVSVMNSLISMYSKCKRVDIAASVFGNLKHKTVVT 412

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+++  YA    + +AL LF  MQ    +P   + V  +   +        K IHG   
Sbjct: 413 WNAMILGYAQNGCVNEALNLFCEMQSHDIKPDSFTLVSVITALADLSVTRQAKWIHGLAI 472

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           +   D  +V V +AL D + KC  I+++  +F+    R +   N+++     +G+ ++A+
Sbjct: 473 RTLMDK-NVFVCTALIDTHAKCGAIQTARKLFDLMQERHVITWNAMIDGYGTNGHGREAL 531

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS--GFESNIAVSCSL 458
           ++F  M +  +  +E+T  + + A S S     G   + +  ++K   G E  +    ++
Sbjct: 532 DLFNEMQNGSVKPNEITFLSVIAACSHSGLVEEG---MYYFESMKENYGLEPTMDHYGAM 588

Query: 459 MDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
           +D   R G ++ + +  + +P  P +    +++
Sbjct: 589 VDLLGRAGRLDDAWKFIQDMPVKPGITVLGAML 621


>gi|297832866|ref|XP_002884315.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330155|gb|EFH60574.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 861

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 181/642 (28%), Positives = 325/642 (50%), Gaps = 26/642 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +++  +D + K      + ++F  +P ++ V+++ +I+GC +      AL  + EM 
Sbjct: 172 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                 S S ++SVL  C+       G Q+H   L   F  +  + +  +D+Y +     
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD+    N  ++N M+  + +     + L +++++ + G+  + +S   + R C+
Sbjct: 292 DAQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +   L EG Q++   IK   + +++ VANA +D Y  C +L EA + FD +   D +SWN
Sbjct: 352 LVKGLSEGLQIYDLAIKSS-LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWN 410

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++ +      ++ L LF  M   R  P   +F   L  A   G++ +G +IH  + K 
Sbjct: 411 AIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLK-ACTGGSLGYGMEIHSSIVKS 469

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAV----------------FESAPGRSL-ECC-- 383
           G    S  V  +L DMY KC +IE +  +                 E    + L E C  
Sbjct: 470 GMASNS-SVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVS 528

Query: 384 -NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            NS+++  +     +DA  +F  M++ GI  D+ T +T L   +  ASA LG  + +H  
Sbjct: 529 WNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG--KQIHAQ 586

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
            IK   +S++ +S +L+D YS+CG +  S  +FEK    + V + +++ GY+ +G G EA
Sbjct: 587 VIKKELQSDVYISSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 646

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           + + E MI   + P+ VTF+ +L  C H G++ +G   F  MK  YG+D    HYS M+D
Sbjct: 647 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVD 706

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI-IGRRVANILMELEPVDFA 621
           +LG++G + +A EL+++ P   D ++W +LL  C +H N + +       L+ L+P D +
Sbjct: 707 ILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSS 766

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            Y+ +SN Y++ G +E    +R      KL ++ G S +E+ 
Sbjct: 767 AYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELK 808



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 153/603 (25%), Positives = 286/603 (47%), Gaps = 45/603 (7%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           +S+S++ D      P  ++ S N+ I+ + KS ++  A   F+ MP RD+V++N ++SG 
Sbjct: 58  VSASMVFDRM----PLRDVVSWNKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGY 113

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
            +     +++ ++ +M   G +    TF+ +L VCS     + G+QIH  V+ +G   ++
Sbjct: 114 LQNGETLKSIEVFVDMGRAGTEFDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVGCDTDV 173

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
              S L+D+Y +    V +L +F  +PE+N  +W+ ++    + +     L+ + +M+  
Sbjct: 174 VAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKV 233

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
               +   +  ++R C+    L  G QLH+H +K  +    I V  A +D Y+ C ++ +
Sbjct: 234 NAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQD 292

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+  FD     +  S+N++++ Y+  +  F AL LF R+          S        + 
Sbjct: 293 AQILFDKSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACAL 352

Query: 326 TGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
              +  G QI+    K  L  D   V V +A  DMYGKC  +  +  VF+    R     
Sbjct: 353 VKGLSEGLQIYDLAIKSSLSLD---VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSW 409

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N+++ +   +G   + + +F  M+   I  DE T  + LKA +     +LG    +H   
Sbjct: 410 NAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSVLKACT---GGSLGYGMEIHSSI 466

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQV----------------FEKIPSPNV---- 483
           +KSG  SN +V CSL+D YS+CG IE + ++                 EK+ +  +    
Sbjct: 467 VKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMC 526

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH---SGMVKE--GQ 538
           V + SI++GY       +A  +   M++ G+ PDK T+  VL  C +   +G+ K+   Q
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           ++   ++S      D    S ++DM  + G L  +  + +++    D + W++++     
Sbjct: 587 VIKKELQS------DVYISSTLVDMYSKCGDLHDSRLMFEKSL-RRDFVTWNAMICGYAH 639

Query: 599 HGN 601
           HG 
Sbjct: 640 HGK 642



 Score =  155 bits (392), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 131/589 (22%), Positives = 269/589 (45%), Gaps = 61/589 (10%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+  G    G Q H  ++  GF    ++ + L+ +Y      V A  +FD +P R++ +W
Sbjct: 16  CAKQGALELGKQAHAHMILSGFRPTTFVLNCLLQVYTNSRDFVSASMVFDRMPLRDVVSW 75

Query: 180 NLMLRAFCELS----------------------------RPDEVLR---MYNKMKAEGVE 208
           N M+  + + +                            +  E L+   ++  M   G E
Sbjct: 76  NKMINGYAKSNNMVKASFFFNMMPVRDVVSWNSMLSGYLQNGETLKSIEVFVDMGRAGTE 135

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            +G +F  +++ CS       G Q+H  V+++G  D ++  A+AL+D Y+     +E+ +
Sbjct: 136 FDGRTFAIILKVCSCLEDTSLGMQIHGVVVRVG-CDTDVVAASALLDMYAKGKRFVESLR 194

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  IP  + +SW++I++     +L+  AL+ F  MQ      S   +   L   +    
Sbjct: 195 VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSE 254

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  G Q+H +  K  F    + V++A  DMY KC+ ++ +  +F+ +   + +  N+++T
Sbjct: 255 LRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDKSENLNRQSYNAMIT 313

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
                 +   A+ +F  ++  G+G DE++LS   +A ++    + G    ++  AIKS  
Sbjct: 314 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEG--LQIYDLAIKSSL 371

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             ++ V+ + +D Y +C  +  + +VF+++   + V + +I+  + +NG G E L +   
Sbjct: 372 SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVS 431

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQHYSCMIDMLGRA 567
           M++  + PD+ TF  VL  C   G +  G  + +S+ KS  G+ ++      +IDM  + 
Sbjct: 432 MLRSRIEPDEFTFGSVLKACT-GGSLGYGMEIHSSIVKS--GMASNSSVGCSLIDMYSKC 488

Query: 568 GILDKAEEL----LQQTPGGGD---------------CMMWSSLLRSCRVHGNEIIGRRV 608
           G++++AE++     Q+T   G                C+ W+S++    +       + +
Sbjct: 489 GMIEEAEKIHSRFFQRTNVSGTMEELEKMHNKRLQEMCVSWNSIISGYVMKEQSEDAQML 548

Query: 609 ANILMEL--EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
              +ME+   P  F  Y+ V +  + +    +  QI    + ++L  D+
Sbjct: 549 FTRMMEMGITPDKF-TYATVLDTCANLASAGLGKQIHAQVIKKELQSDV 596



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/197 (26%), Positives = 100/197 (50%), Gaps = 10/197 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ---PNPQLNIYSSNRTIDDFVKS 57
           M+   + P   T  T+  TC ++   S+ L    + Q      Q ++Y S+  +D + K 
Sbjct: 552 MMEMGITPDKFTYATVLDTCANLA--SAGLGKQIHAQVIKKELQSDVYISSTLVDMYSKC 609

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L+ ++ +F++   RD VT+N +I G       ++A+ L++ M+   IK +  TF S+L
Sbjct: 610 GDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISIL 669

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ER 174
             C++ G   +G++ +  ++   +GL+  +   S +VD+  + G   RAL+L  E+P E 
Sbjct: 670 RACAHMGLIDKGLE-YFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEA 728

Query: 175 NLATWNLMLRAFCELSR 191
           +   W  +L   C + R
Sbjct: 729 DDVIWRTLL-GVCTIHR 744


>gi|224114351|ref|XP_002332376.1| predicted protein [Populus trichocarpa]
 gi|222832200|gb|EEE70677.1| predicted protein [Populus trichocarpa]
          Length = 660

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 167/536 (31%), Positives = 285/536 (53%), Gaps = 10/536 (1%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDL--YMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           QIH ++L  G   + +  S +V        G    A  +F ++P     T N ++R   +
Sbjct: 6   QIHAQMLRTGLFFDPFTASKIVAFCSLQESGSLQYARLVFSQIPNPTSYTCNSIIRGCTD 65

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
            +   E L  Y +M  +G+ P+  +F  + + C       EGKQ+H H  KLG+   + +
Sbjct: 66  KNLHQEALLFYQEMMVQGLIPDRYTFPSLFKSCRNS---SEGKQIHCHSTKLGFAS-DTY 121

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
             N L++ YS CG L+ A+K FD +    V+SW +++ ++A +D   +A+ LF RM    
Sbjct: 122 AQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMMKSE 181

Query: 309 K-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             +P+  + V  L   +R  ++   K+IH Y+ + GF    V + + L D+Y KC  ++ 
Sbjct: 182 NVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVV-LNTVLMDVYCKCGCVQL 240

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  +F+ A  ++L   N ++   +   N ++A+ +F  M  +GI  D+VT+++ L A + 
Sbjct: 241 ARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLACTH 300

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             +  LG  + LH    K   + ++A+  +L+D Y++CG IE + QVF ++P  +V+ +T
Sbjct: 301 LGALELG--KWLHAYIKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTWT 358

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           +++ G +  G    AL   + M  +G+ PD +TF+ VLA C+H+G V EG   FNSM   
Sbjct: 359 ALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFVDEGISHFNSMSDT 418

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           YGI    +HY  ++D+LGRAG + +AEEL++  P   D  +   LL +CR+HGN     R
Sbjct: 419 YGIQPTIEHYGGLVDILGRAGRIAEAEELIKSMPMAPDQFVLGGLLGACRIHGNLEAAER 478

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            A  L+E++P     Y  +SN Y    ++E + + RE    R + +  G S IEV+
Sbjct: 479 AAKQLLEIDPYHSGTYVLLSNIYKSSKKWEEAKRTRELMAERGMRKPPGCSQIEVH 534



 Score =  177 bits (449), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/425 (26%), Positives = 208/425 (48%), Gaps = 7/425 (1%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           +SG L  A+ +F ++P     T N +I GC      ++AL  Y EM+  G+     TF S
Sbjct: 34  ESGSLQYARLVFSQIPNPTSYTCNSIIRGCTDKNLHQEALLFYQEMMVQGLIPDRYTFPS 93

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +   C N+   +EG QIHC    LGF  + Y  + L+++Y   G  V A  +FD++ ++ 
Sbjct: 94  LFKSCRNS---SEGKQIHCHSTKLGFASDTYAQNTLMNMYSNCGCLVSARKVFDKMEDKT 150

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           + +W  M+    +  +P+E +R++++ MK+E V+PN ++   ++  C+    L   K++H
Sbjct: 151 VVSWATMIGVHAQWDQPNEAVRLFDRMMKSENVKPNEVTLVNVLTACARARDLAMVKRIH 210

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
            ++ + G+   ++ +   L+D Y  CG +  A+  FD     ++ SWN +++ + +    
Sbjct: 211 EYIDEHGF-GRHVVLNTVLMDVYCKCGCVQLARDLFDKAQEKNLFSWNIMINGHVEDSNY 269

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +AL LF  MQ    +    +    L   +  G +  GK +H Y+ K   D   V + +A
Sbjct: 270 EEALLLFREMQTKGIKGDKVTMASLLLACTHLGALELGKWLHAYIKKQRID-VDVALGTA 328

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L DMY KC  IE+++ VF   P + +    +L+  L   G  ++A++ F  M  +G+  D
Sbjct: 329 LVDMYAKCGSIETAIQVFHEMPEKDVMTWTALILGLAMCGQAENALQYFDEMHIKGVKPD 388

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
            +T    L A S +   + G     +  +   G +  I     L+D   R G I  + ++
Sbjct: 389 AITFVGVLAACSHAGFVDEGISH-FNSMSDTYGIQPTIEHYGGLVDILGRAGRIAEAEEL 447

Query: 475 FEKIP 479
            + +P
Sbjct: 448 IKSMP 452



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 132/499 (26%), Positives = 232/499 (46%), Gaps = 51/499 (10%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y+ N  ++ +   G L SA+K+FD+M  + +V++  +I    ++  P +A+ L+D M+
Sbjct: 119 DTYAQNTLMNMYSNCGCLVSARKVFDKMEDKTVVSWATMIGVHAQWDQPNEAVRLFDRMM 178

Query: 103 -SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            S  +K +  T  +VL+ C+ A       +IH  +   GFG ++ + + L+D+Y + G  
Sbjct: 179 KSENVKPNEVTLVNVLTACARARDLAMVKRIHEYIDEHGFGRHVVLNTVLMDVYCKCGCV 238

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A DLFD+  E+NL +WN+M+    E S  +E L ++ +M+ +G++ + ++   ++  C
Sbjct: 239 QLARDLFDKAQEKNLFSWNIMINGHVEDSNYEEALLLFREMQTKGIKGDKVTMASLLLAC 298

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L+ GK LH++ IK   +DV++ +  ALVD Y+ CGS+  A + F  +P  DV++W
Sbjct: 299 THLGALELGKWLHAY-IKKQRIDVDVALGTALVDMYAKCGSIETAIQVFHEMPEKDVMTW 357

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +++   A      +AL+ F  M +   +P   +FV  L   S  G V            
Sbjct: 358 TALILGLAMCGQAENALQYFDEMHIKGVKPDAITFVGVLAACSHAGFV------------ 405

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D G  H  S ++D YG    IE                   L+  L  +G I +A E
Sbjct: 406 ---DEGISHFNS-MSDTYGIQPTIEHY---------------GGLVDILGRAGRIAEAEE 446

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSA---SANLGSCRLLHCCAIKSG---FESNIAVS 455
           +   M    +  D+  L   L A  +     +A   + +LL      SG     SNI  S
Sbjct: 447 LIKSM---PMAPDQFVLGGLLGACRIHGNLEAAERAAKQLLEIDPYHSGTYVLLSNIYKS 503

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN----GYSRNGMGREALDMLEVMIQ 511
               +   R   + ++ +   K P  + +    +++    G S +    E  +MLE MI 
Sbjct: 504 SKKWEEAKRTREL-MAERGMRKPPGCSQIEVHGVVHEFVKGDSSHRQSSEINEMLEDMIS 562

Query: 512 R----GLIPDKVTFLCVLA 526
           +    G +PDK   L  +A
Sbjct: 563 KLKNAGYVPDKSEVLFDMA 581


>gi|356540339|ref|XP_003538647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g22690-like [Glycine max]
          Length = 836

 Score =  282 bits (722), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 184/655 (28%), Positives = 326/655 (49%), Gaps = 46/655 (7%)

Query: 48  NRTIDDFVKSGHLNS---AKKLF--DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+ I   V+ G L S   A+  F  D+     +  YN LI G        QA+ LY +M+
Sbjct: 63  NKLIASSVQIGTLESLDYARNAFGDDDGNMASLFMYNCLIRGYASAGLGDQAILLYVQML 122

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI     TF  +LS CS     +EG+Q+H  VL +G   ++++ + L+  Y   G   
Sbjct: 123 VMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGKVD 182

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               LFD + ERN+ +W  ++  +       E + ++ +M   GVEPN ++   ++  C+
Sbjct: 183 LGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISACA 242

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ GK++ S++ +LG ++++  + NALVD Y  CG +  A++ FD     +++ +N
Sbjct: 243 KLKDLELGKKVCSYISELG-MELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMYN 301

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I+S Y  ++   D L +   M     RP   + +  +   ++ G++  GK  H YV + 
Sbjct: 302 TIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLRN 361

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK----- 397
           G + G  ++ +A+ DMY KC   E++  VFE  P +++   NSL+  L+  G+++     
Sbjct: 362 GLE-GWDNISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMELAWRI 420

Query: 398 --------------------------DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
                                     +A+E+F  M ++GI  D VT+         SA  
Sbjct: 421 FDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQNQGIPGDRVTMVGI-----ASACG 475

Query: 432 NLGSCRLLH--CCAI-KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            LG+  L    C  I K+    ++ +  +L+D +SRCG    +  VF+++   +V  +T+
Sbjct: 476 YLGALDLAKWVCTYIEKNDIHVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWTA 535

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
            +   +  G    A+++   M+++ + PD V F+ +L  C+H G V +G+ +F SM+  +
Sbjct: 536 AIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGRQLFWSMEKAH 595

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           GI     HY CM+D+LGRAG+L++A +L+Q  P   + ++W SLL +CR H N  +    
Sbjct: 596 GIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLLAACRKHKNVELAHYA 655

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           A  L +L P    ++  +SN Y+  G++    ++R     + + +  G S IEV 
Sbjct: 656 AEKLTQLAPERVGIHVLLSNIYASAGKWTDVARVRLQMKEKGVQKVPGSSSIEVQ 710



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 130/527 (24%), Positives = 242/527 (45%), Gaps = 44/527 (8%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   ++P   T   L   C+ I+ LS  + +  +  +   + +I+ SN  I  + + G 
Sbjct: 121 MLVMGIVPDKYTFPFLLSACSKILALSEGVQVHGAVLKMGLEGDIFVSNSLIHFYAECGK 180

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++  +KLFD M  R++V++  LI+G       K+A+ L+ +M   G++ +  T   V+S 
Sbjct: 181 VDLGRKLFDGMLERNVVSWTSLINGYSGRDLSKEAVSLFFQMGEAGVEPNPVTMVCVISA 240

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+       G ++   +  LG  L+  + + LVD+YM+ G    A  +FDE   +NL  +
Sbjct: 241 CAKLKDLELGKKVCSYISELGMELSTIMVNALVDMYMKCGDICAARQIFDECANKNLVMY 300

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  +       +VL + ++M  +G  P+ ++    +  C+    L  GK  H++V++
Sbjct: 301 NTIMSNYVHHEWASDVLVILDEMLQKGPRPDKVTMLSTIAACAQLGDLSVGKSSHAYVLR 360

Query: 240 ---LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS-IYADYDL-- 293
               GW +    ++NA++D Y  CG    A K F+ +P   V++WNS+++ +  D D+  
Sbjct: 361 NGLEGWDN----ISNAIIDMYMKCGKREAACKVFEHMPNKTVVTWNSLIAGLVRDGDMEL 416

Query: 294 ---IFD-------------------------ALELFFRMQLCRKRPSIR-SFVEFLNFAS 324
              IFD                         A+ELF  MQ  +  P  R + V   +   
Sbjct: 417 AWRIFDEMLERDLVSWNTMIGALVQVSMFEEAIELFREMQ-NQGIPGDRVTMVGIASACG 475

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
             G +   K +  Y+ K    H  + + +AL DM+ +C    S++ VF+    R +    
Sbjct: 476 YLGALDLAKWVCTYIEKNDI-HVDLQLGTALVDMFSRCGDPSSAMHVFKRMEKRDVSAWT 534

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           + +  +   GN + A+E+F  M+++ +  D+V     L A S   S + G  +L      
Sbjct: 535 AAIGVMAMEGNTEGAIELFNEMLEQKVKPDDVVFVALLTACSHGGSVDQGR-QLFWSMEK 593

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
             G   +I     ++D   R G +E +  + + +P  PN V + S++
Sbjct: 594 AHGIRPHIVHYGCMVDLLGRAGLLEEAVDLIQSMPIEPNDVVWGSLL 640


>gi|225435852|ref|XP_002265253.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Vitis vinifera]
          Length = 972

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 181/648 (27%), Positives = 323/648 (49%), Gaps = 68/648 (10%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D F+K G ++ A++ F+E+  +D+  +N+++SG       K+AL    +M   G+K   
Sbjct: 232 LDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQ 291

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T+++++S  + +G + E  +                       ++ MG       L D 
Sbjct: 292 VTWNAIISGYAQSGQFEEASK----------------------YFLEMG------GLKDF 323

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            P  N+ +W  ++    +     E L ++ KM  EGV+PN ++    V  C+   LL  G
Sbjct: 324 KP--NVVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHG 381

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA- 289
           +++H + IK+  +D ++ V N+LVD+Y+ C S+  A++ F  I   D++SWN++++ YA 
Sbjct: 382 REIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYAL 441

Query: 290 -------------------DYDLIF---------------DALELFFRMQLCRKRPSIRS 315
                              + D+I                 ALE F RM      P+  +
Sbjct: 442 RGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTT 501

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
               L    +  N+  GK+IHGYV +   +  S  V SAL  MY  C+ +E + +VF   
Sbjct: 502 ISGALAACGQVRNLKLGKEIHGYVLRNHIEL-STGVGSALISMYSGCDSLEVACSVFSEL 560

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
             R +   NS++++   SG   +A+++   M    + ++ VT+ + L A S  A+   G 
Sbjct: 561 STRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQG- 619

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + +H   I+ G ++   +  SL+D Y RCG I+ S ++F+ +P  ++V +  +++ Y  
Sbjct: 620 -KEIHQFIIRCGLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGM 678

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +G G +A+++ +     GL P+ +TF  +L+ C+HSG+++EG   F  MK+ Y +D   +
Sbjct: 679 HGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIEEGWKYFKMMKTEYAMDPAVE 738

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
            Y+CM+D+L RAG  ++  E +++ P   +  +W SLL +CR+H N  +    A  L EL
Sbjct: 739 QYACMVDLLSRAGQFNETLEFIEKMPFEPNAAVWGSLLGACRIHCNPDLAEYAARYLFEL 798

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           EP     Y  ++N YS  G +E + +IR     R +T+  G S IEV 
Sbjct: 799 EPQSSGNYVLMANIYSAAGRWEDAAKIRCLMKERGVTKPPGCSWIEVK 846



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 126/596 (21%), Positives = 260/596 (43%), Gaps = 86/596 (14%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSH 104
           +R ++ + ++G +  A+++FD+M  R++ ++  ++    G G +    +  YL   MV+ 
Sbjct: 128 SRLLEVYCQTGCVEDARRMFDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYL---MVNE 184

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++     F  V   CS    Y  G  ++  +LS+GF  N  +   ++D++++ G    A
Sbjct: 185 GVRPDHFVFPKVFKACSELKNYRVGKDVYDYMLSIGFEGNSCVKGSILDMFIKCGRMDIA 244

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
              F+E+  +++  WN+M+  +       + L+  + MK  GV+P+ +++          
Sbjct: 245 RRFFEEIEFKDVFMWNIMVSGYTSKGEFKKALKCISDMKLSGVKPDQVTW---------- 294

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF-------DFIPVDD 277
                                     NA++  Y+  G   EA K F       DF P  +
Sbjct: 295 --------------------------NAIISGYAQSGQFEEASKYFLEMGGLKDFKP--N 326

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V+SW ++++        F+AL +F +M L   +P+  +    ++  +    +  G++IHG
Sbjct: 327 VVSWTALIAGSEQNGYDFEALSVFRKMVLEGVKPNSITIASAVSACTNLSLLRHGREIHG 386

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           Y  K+      + V ++L D Y KC  +E +   F       L   N+++      G+ +
Sbjct: 387 YCIKVEELDSDLLVGNSLVDYYAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHE 446

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKAL------------------------SVSASANL 433
           +A+E+   M  +GI  D +T +  +                           + + S  L
Sbjct: 447 EAIELLSEMKFQGIEPDIITWNGLVTGFTQYGDGKAALEFFQRMHSMGMDPNTTTISGAL 506

Query: 434 GSC---------RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +C         + +H   +++  E +  V  +L+  YS C  +E++  VF ++ + +VV
Sbjct: 507 AACGQVRNLKLGKEIHGYVLRNHIELSTGVGSALISMYSGCDSLEVACSVFSELSTRDVV 566

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + SI++  +++G    ALD+L  M    +  + VT +  L  C+    +++G+ +   +
Sbjct: 567 VWNSIISACAQSGRSVNALDLLREMNLSNVEVNTVTMVSALPACSKLAALRQGKEIHQFI 626

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
               G+D      + +IDM GR G + K+  +    P   D + W+ ++    +HG
Sbjct: 627 IRC-GLDTCNFILNSLIDMYGRCGSIQKSRRIFDLMP-QRDLVSWNVMISVYGMHG 680



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/475 (24%), Positives = 219/475 (46%), Gaps = 46/475 (9%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E    ++S+L  C        G Q+H +++  G  +  ++GS L+++Y + G    A  +
Sbjct: 87  ECIEIYASILQKCRKLYNLRLGFQVHAQLVVNGVDVCEFLGSRLLEVYCQTGCVEDARRM 146

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD++ ERN+ +W  ++  +C L   +E ++++  M  EGV P+   F  + + CS     
Sbjct: 147 FDKMSERNVFSWTAIMEMYCGLGDYEETIKLFYLMVNEGVRPDHFVFPKVFKACSELKNY 206

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             GK ++ +++ +G+ + N  V  +++D +  CG +  A++ F+ I   DV  WN +VS 
Sbjct: 207 RVGKDVYDYMLSIGF-EGNSCVKGSILDMFIKCGRMDIARRFFEEIEFKDVFMWNIMVSG 265

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y        AL+    M+L   +P                 V +   I GY     F+  
Sbjct: 266 YTSKGEFKKALKCISDMKLSGVKPD---------------QVTWNAIISGYAQSGQFEEA 310

Query: 348 SVHV--QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           S +      L D   K NV+  +                +L+     +G   +A+ +F  
Sbjct: 311 SKYFLEMGGLKDF--KPNVVSWT----------------ALIAGSEQNGYDFEALSVFRK 352

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIK-SGFESNIAVSCSLMDA 461
           MV EG+  + +T+++     +VSA  NL      R +H   IK    +S++ V  SL+D 
Sbjct: 353 MVLEGVKPNSITIAS-----AVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDY 407

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++C  +E++ + F  I   ++V + +++ GY+  G   EA+++L  M  +G+ PD +T+
Sbjct: 408 YAKCRSVEVARRKFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITW 467

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
             ++ G    G  K     F  M S+ G+D +    S  +   G+   L   +E+
Sbjct: 468 NGLVTGFTQYGDGKAALEFFQRMHSM-GMDPNTTTISGALAACGQVRNLKLGKEI 521



 Score =  131 bits (329), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/407 (23%), Positives = 175/407 (42%), Gaps = 40/407 (9%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN--IYSSNRTIDDFVKSGHLNSAKK 65
           P   TI +    CT++  L     +  YC    +L+  +   N  +D + K   +  A++
Sbjct: 360 PNSITIASAVSACTNLSLLRHGREIHGYCIKVEELDSDLLVGNSLVDYYAKCRSVEVARR 419

Query: 66  LFDEMPARDMVTYNL-----------------------------------LISGCGKFRH 90
            F  +   D+V++N                                    L++G  ++  
Sbjct: 420 KFGMIKQTDLVSWNAMLAGYALRGSHEEAIELLSEMKFQGIEPDIITWNGLVTGFTQYGD 479

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
            K AL  +  M S G+  + +T S  L+ C        G +IH  VL     L+  +GS 
Sbjct: 480 GKAALEFFQRMHSMGMDPNTTTISGALAACGQVRNLKLGKEIHGYVLRNHIELSTGVGSA 539

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           L+ +Y        A  +F EL  R++  WN ++ A  +  R    L +  +M    VE N
Sbjct: 540 LISMYSGCDSLEVACSVFSELSTRDVVVWNSIISACAQSGRSVNALDLLREMNLSNVEVN 599

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
            ++    +  CS    L +GK++H  +I+ G +D   F+ N+L+D Y  CGS+ ++++ F
Sbjct: 600 TVTMVSALPACSKLAALRQGKEIHQFIIRCG-LDTCNFILNSLIDMYGRCGSIQKSRRIF 658

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  D++SWN ++S+Y  +    DA+ LF + +    +P+  +F   L+  S +G + 
Sbjct: 659 DLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLKPNHITFTNLLSACSHSGLIE 718

Query: 331 FG-KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            G K      T+   D  +V   + + D+  +      ++   E  P
Sbjct: 719 EGWKYFKMMKTEYAMDP-AVEQYACMVDLLSRAGQFNETLEFIEKMP 764



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/141 (29%), Positives = 80/141 (56%), Gaps = 4/141 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + + G +  ++++FD MP RD+V++N++IS  G       A+ L+ +  + G+K
Sbjct: 639 NSLIDMYGRCGSIQKSRRIFDLMPQRDLVSWNVMISVYGMHGFGMDAVNLFQQFRTMGLK 698

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRAL 165
            +  TF+++LS CS++G   EG + + +++   + ++  +   + +VDL  R G     L
Sbjct: 699 PNHITFTNLLSACSHSGLIEEGWK-YFKMMKTEYAMDPAVEQYACMVDLLSRAGQFNETL 757

Query: 166 DLFDELP-ERNLATWNLMLRA 185
           +  +++P E N A W  +L A
Sbjct: 758 EFIEKMPFEPNAAVWGSLLGA 778


>gi|413932452|gb|AFW67003.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 719

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 193/634 (30%), Positives = 324/634 (51%), Gaps = 19/634 (2%)

Query: 34  SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           S+  P P  ++    + +D  +KSG L  A  LFD MP +++V +   ISGC +   P+ 
Sbjct: 62  SHAAPPP--DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEA 119

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           A  ++ +M+  G+  +    ++ L+ C+ AG    G Q+H   +  GF  + +IGS L++
Sbjct: 120 AATMFADMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIE 179

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFC---ELSRPDEVLRMYNKMKAEGVEPN 210
           LY R G    A ++F  +   ++  +  ++ A C   EL+R  +VL    +M  +G++PN
Sbjct: 180 LYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVL---CQMTRQGLQPN 236

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +   M+  C  G+    G+Q+H +++K+     +++ + AL+DFYS  G    AK  F
Sbjct: 237 EHTMTSMLAECPRGI----GEQIHGYMLKV-MGSQSVYASTALIDFYSRYGDFGTAKTVF 291

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           + +   +V+SW S++ +      + DAL +F  M     +P+  +F   L   S  G+V 
Sbjct: 292 ENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIAL---SACGSVC 348

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G+QIH    K       + V +AL  MYG+   +    AV        L    + +++ 
Sbjct: 349 LGRQIHCSAIKRDL-MTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISAN 407

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
             +G  + AV +   M  EG   ++   S+ L   S +  A L   R LHC A+K G + 
Sbjct: 408 FQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLS--SCADLALLHQGRQLHCLALKLGCDF 465

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
            +    +L++ YS+CG I  +   F+ + + +V+ + S+++G +++G    AL+    M 
Sbjct: 466 KVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMC 525

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
                PD  TFL VL GCNH+G+VKEG+  F  M   YG+     HY+CMIDMLGR G  
Sbjct: 526 SSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRF 585

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +A  +++  P   D ++W +LL SC++H N  IG+  A+ LMEL   D A Y  +SN Y
Sbjct: 586 AEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDSASYVLMSNLY 645

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +   E+  + ++R       + +D G S IEV +
Sbjct: 646 AMHEEWRDAERVRRRMDEIGVKKDAGWSWIEVKN 679



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 143/327 (43%), Gaps = 55/327 (16%)

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           ++V V  +AP   +      +  L+ SG + DA+++F  M  + +      +S   +   
Sbjct: 57  AAVNVSHAAPPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGR 116

Query: 427 VSASANLGSCRL-----------------------------LHCCAIKSGFESNIAVSCS 457
             A+A + +  L                             +H  A+++GF ++  +   
Sbjct: 117 PEAAATMFADMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSC 176

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L++ YSRCG +  + +VF ++ +P+VV +TS+++   RNG    A+D+L  M ++GL P+
Sbjct: 177 LIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPN 236

Query: 518 KVTFLCVLAGCN-------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
           + T   +LA C        H  M+K    V  S +SVY   A       +ID   R G  
Sbjct: 237 EHTMTSMLAECPRGIGEQIHGYMLK----VMGS-QSVYASTA-------LIDFYSRYGDF 284

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME--LEPVDFAVYSQVSN 628
             A+ + +      + + W S+++ C   G      RV + ++   ++P +FA     S 
Sbjct: 285 GTAKTVFENLE-SKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFA----FSI 339

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDI 655
             S  G   +  QI  +A+ R L  DI
Sbjct: 340 ALSACGSVCLGRQIHCSAIKRDLMTDI 366


>gi|225438217|ref|XP_002263704.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Vitis vinifera]
          Length = 729

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 183/625 (29%), Positives = 324/625 (51%), Gaps = 16/625 (2%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           NP  ++YS    +    K G +  A  LF++ P    V +N +I+GC + +H + AL L+
Sbjct: 116 NP--DVYSWTTLLSACTKLGQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLF 173

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EM   G++    TF+SVLS+CS       G ++H  V+  GF +   + + L+ +Y   
Sbjct: 174 REMHQLGVRHDKYTFASVLSLCS-LELLDFGREVHTLVIKTGFLVRASVINALLTMYFNS 232

Query: 159 GPSVRALDLFDELPE--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           G    A ++F+E      +  T+N+M+     + R +E L M+ +M+   + P  L+F  
Sbjct: 233 GKVADAYEVFEEAESTVHDDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVS 292

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++  CS   +     Q+H+  IK+G+ +    V+NA +  YS+CG+L      FD +   
Sbjct: 293 VMSSCSSARV---SHQVHAQAIKMGF-EACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEK 348

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D+ISWN I+  YA  +    A+  F +MQ     P   +    L   + + ++   K   
Sbjct: 349 DLISWNIIIMNYAQGNFYRLAILAFLQMQRAGIEPDEFTIGSLL---ASSESLEIVKMFQ 405

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             V+K G +   + V +AL   + K   IE +  VF +    +L   N++++  L +G  
Sbjct: 406 ALVSKNGLN-SKIEVSNALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFT 464

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
              +E F  ++   +  +  TLS  L ++  S SA L   + +H   ++SG  S  ++  
Sbjct: 465 LQGLEQFYELLMSTLKPNAYTLSIVL-SICASISA-LRHGKQIHGYILRSGVFSVTSLGN 522

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI- 515
           +L+  Y++CG ++ S ++F  +   ++V + ++++ Y+++G G+EA+   + M   G + 
Sbjct: 523 ALITMYAKCGDLDWSLRIFNVMNGRDIVSWNAMISAYAQHGKGKEAVHFFKAMQDSGGVK 582

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD+ TF  VL+ C+H+G+V +G  +FNSM + YG +    H SC++D+LGRAG L++AE 
Sbjct: 583 PDQATFTAVLSACSHAGLVDDGTRIFNSMVNDYGFEPGADHLSCIVDLLGRAGYLEEAER 642

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L+          +W +L  +C  HGN  +GR VA  L+E+E  D AVY  +SN Y+  G+
Sbjct: 643 LINSKHLKIVSSIWWTLFSACAAHGNLRLGRIVAGFLLEIEQNDPAVYVLLSNIYAAAGQ 702

Query: 636 FEVSMQIRETALARKLTRDIGHSLI 660
           +E +   R+     ++ +  G S I
Sbjct: 703 WEEAANTRDLMQKTRVAKQPGCSWI 727



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 134/564 (23%), Positives = 250/564 (44%), Gaps = 47/564 (8%)

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFSSVLSVCSNAGFYTEG 129
            A  ++  N L++   +  H   ++ L+ ++  S+ +K    T SS L+ C+N  +   G
Sbjct: 13  AAEQLIKINQLLAELTRSHHNSASVQLFVQIHSSNYLKPDHFTLSSTLTACANLRYAASG 72

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLY-------------------------------MRM 158
            Q+H   +  G     ++G+ L+  Y                                ++
Sbjct: 73  NQLHAYSIQTGLKAYTHVGNTLLSFYAKSKDLVSVQRVFNEIENPDVYSWTTLLSACTKL 132

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LF++ P      WN ++    E    +  L ++ +M   GV  +  +F  ++
Sbjct: 133 GQIGYACHLFNQTPRMIPVVWNAIITGCAENKHTEIALNLFREMHQLGVRHDKYTFASVL 192

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI--PVD 276
             CS+  LLD G+++H+ VIK G++ V   V NAL+  Y   G + +A + F+     V 
Sbjct: 193 SLCSLE-LLDFGREVHTLVIKTGFL-VRASVINALLTMYFNSGKVADAYEVFEEAESTVH 250

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D I++N ++   A      +AL +F  MQ    RP+  +FV  +   S   +     Q+H
Sbjct: 251 DDITFNVMIGGLASVGRDEEALIMFKEMQEACLRPTELTFVSVM---SSCSSARVSHQVH 307

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
               K+GF+     V +A   MY  C  + +   VF+    + L   N ++ +       
Sbjct: 308 AQAIKMGFE-ACTPVSNAAMTMYSSCGNLHAVHMVFDRLEEKDLISWNIIIMNYAQGNFY 366

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + A+  F  M   GI  DE T+ + L     ++S +L   ++      K+G  S I VS 
Sbjct: 367 RLAILAFLQMQRAGIEPDEFTIGSLL-----ASSESLEIVKMFQALVSKNGLNSKIEVSN 421

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+ A+S+ G IE ++QVF  + SPN++ + +I++G+  NG   + L+    ++   L P
Sbjct: 422 ALVSAFSKHGQIEQAYQVFNNMSSPNLISWNTIISGFLFNGFTLQGLEQFYELLMSTLKP 481

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           +  T   VL+ C     ++ G+ +   +    G+ +     + +I M  + G LD +  +
Sbjct: 482 NAYTLSIVLSICASISALRHGKQIHGYILRS-GVFSVTSLGNALITMYAKCGDLDWSLRI 540

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHG 600
                 G D + W++++ +   HG
Sbjct: 541 F-NVMNGRDIVSWNAMISAYAQHG 563


>gi|225457865|ref|XP_002279206.1| PREDICTED: pentatricopeptide repeat-containing protein At3g26540
           [Vitis vinifera]
          Length = 711

 Score =  282 bits (721), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 185/614 (30%), Positives = 313/614 (50%), Gaps = 43/614 (7%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P   I+  NR I+ + K   L+ A++LF+EMP RD  ++N +I+   +    ++AL+L+
Sbjct: 90  SPAPPIFLLNRAIETYGKCSCLDDARELFEEMPQRDGGSWNAMITAYAQGGCAEKALWLF 149

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M   GI  +  TF+SVL  C+         QIH  ++  GF  N+ +GS LVD+Y + 
Sbjct: 150 SRMNRLGIWANEITFASVLGSCATVLALFLSKQIHGLIVKYGFCWNVILGSSLVDIYGKC 209

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A  +FDE+   N  +WN+++R + E+    E + M+ KM    + P   +F   +
Sbjct: 210 RVMSDARRMFDEIENPNAISWNVIVRRYLEMGNEKEAVVMFFKMIRANIRPLNFTFSNAL 269

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL--------------- 263
             CS    L EG Q+H   I++G+ D +  V+++L+D Y+ CG L               
Sbjct: 270 IACSSISALQEGIQIHGVAIRIGY-DEDEVVSSSLIDMYAKCGDLESACRIFELPSSKNL 328

Query: 264 ----------------IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
                            EA+  FD +P   VISWN++++ Y  +    +ALE  F M+  
Sbjct: 329 ISWTSIVSGYAMSGQTREARVLFDEMPERSVISWNAMLAGYTHFCQWEEALEFVFLMRKA 388

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC-NVIE 366
            +     +    LN  +   +V  GKQ+HG++ + G  + ++ V +AL  MYGKC N+  
Sbjct: 389 TQDIDHVTVGLILNVCAGLSDVESGKQVHGFIYRHGL-YSNLFVGNALLHMYGKCGNLRS 447

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           + +  ++ +  R     N+L+TS    G  ++A+ +FG M  E     + TL T L    
Sbjct: 448 TRLWFYQMSHWRDRISWNALLTSHARHGLSEEAMTIFGEMQWETTP-SKFTLGTLL---- 502

Query: 427 VSASAN---LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
            SA AN   L   + +H   I++G+E ++    +L+D YS+C  +E + +VF++ PS ++
Sbjct: 503 -SACANIFALEQGKQIHGFMIRNGYEIDVVARGALVDMYSKCRCLEYALKVFKEAPSRDL 561

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           + + S++ G   NG GR+ L +  +M + G+ PD +TF  +L GC   G+   G   FNS
Sbjct: 562 ILWNSMILGCCHNGRGRDVLGLFGLMEEEGVKPDHITFQGILLGCICEGLAGLGTEYFNS 621

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M + Y I    +HY  MI++ GR G +D+ E+ +++ P      M + +  +C  HG+  
Sbjct: 622 MSNKYCIIPRLEHYESMIELYGRHGFMDELEDFIKRMPFEPTVAMLTRVFNACSEHGHSR 681

Query: 604 IGRRVANILMELEP 617
           +G+  A  L EL P
Sbjct: 682 LGKWAAEQLNELNP 695



 Score =  173 bits (439), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/543 (23%), Positives = 259/543 (47%), Gaps = 46/543 (8%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           S ++ +  +CS+     E  ++   +++      +++ +  ++ Y +      A +LF+E
Sbjct: 61  SLYARLFQICSSNLAIVEARKVESHLITFSPAPPIFLLNRAIETYGKCSCLDDARELFEE 120

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P+R+  +WN M+ A+ +    ++ L ++++M   G+  N ++F  ++  C+  + L   
Sbjct: 121 MPQRDGGSWNAMITAYAQGGCAEKALWLFSRMNRLGIWANEITFASVLGSCATVLALFLS 180

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+H  ++K G+   N+ + ++LVD Y  C  + +A++ FD I   + ISWN IV  Y +
Sbjct: 181 KQIHGLIVKYGFC-WNVILGSSLVDIYGKCRVMSDARRMFDEIENPNAISWNVIVRRYLE 239

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +A+ +FF+M     RP   +F   L   S    +  G QIHG   ++G+D   V 
Sbjct: 240 MGNEKEAVVMFFKMIRANIRPLNFTFSNALIACSSISALQEGIQIHGVAIRIGYDEDEV- 298

Query: 351 VQSALTDMYGKCNVIESSVAVFE-------------------------------SAPGRS 379
           V S+L DMY KC  +ES+  +FE                                 P RS
Sbjct: 299 VSSSLIDMYAKCGDLESACRIFELPSSKNLISWTSIVSGYAMSGQTREARVLFDEMPERS 358

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   N+++    H    ++A+E    M      +D VT+   L     +  +++ S + +
Sbjct: 359 VISWNAMLAGYTHFCQWEEALEFVFLMRKATQDIDHVTVGLILNV--CAGLSDVESGKQV 416

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGM 498
           H    + G  SN+ V  +L+  Y +CG++  +   F ++    + + + +++  ++R+G+
Sbjct: 417 HGFIYRHGLYSNLFVGNALLHMYGKCGNLRSTRLWFYQMSHWRDRISWNALLTSHARHGL 476

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQHY 557
             EA+ +   M Q    P K T   +L+ C +   +++G+ +   M ++ Y ID   +  
Sbjct: 477 SEEAMTIFGEM-QWETTPSKFTLGTLLSACANIFALEQGKQIHGFMIRNGYEIDVVAR-- 533

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI--LMEL 615
             ++DM  +   L+ A ++ ++ P   D ++W+S++  C  +G    GR V  +  LME 
Sbjct: 534 GALVDMYSKCRCLEYALKVFKEAP-SRDLILWNSMILGCCHNGR---GRDVLGLFGLMEE 589

Query: 616 EPV 618
           E V
Sbjct: 590 EGV 592


>gi|224112156|ref|XP_002316102.1| predicted protein [Populus trichocarpa]
 gi|222865142|gb|EEF02273.1| predicted protein [Populus trichocarpa]
          Length = 665

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 170/621 (27%), Positives = 321/621 (51%), Gaps = 7/621 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           S + +  +   G L+ A+ +FD +P  D +++ ++I         +  +  Y+ M     
Sbjct: 40  STKLVSLYGSFGRLDLARLVFDTIPHPDFLSWKVIIRWYFLNSEFRDIVGFYNRMRVCLK 99

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           +     FS VL  CS +  + EG ++HC+++  G   + ++ + LVD+Y + G    +  
Sbjct: 100 ECDNVVFSHVLKACSESRNFDEGRKVHCQIVKFG-NPDSFVFTGLVDMYAKCGEIECSRS 158

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FDE  +RN+ +W+ M+  + + +   + L ++N+M+ E +E N ++   +V  C     
Sbjct: 159 VFDENLDRNVFSWSSMIAGYVQNNLAQDGLVLFNRMREELIEANQITLGILVHACKKLGA 218

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +GK LH ++IK G +++  ++  AL+D Y+ CG + +A+  FD +   D++SW +++ 
Sbjct: 219 LHQGKWLHGYLIKCG-IELGSYLVTALLDLYAKCGVVRDARSVFDELHGIDIVSWTAMIV 277

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y       +AL+LF + +     P+  +     +  S+  N+  G+ IHG   KLG   
Sbjct: 278 GYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGRSIHGLSIKLG--S 335

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
               V ++L D Y KC +   +  VFE+   R +   NS++++   +G+  +A+E+F  M
Sbjct: 336 RDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNGSAYEALELFHQM 395

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRC 465
               +  D VTL + L A +   +  +GS    H  A+K G   SN+ V  +L+  Y++C
Sbjct: 396 RMGSVLPDAVTLVSVLSACASLNALQVGSS--FHAYAVKRGLLSSNVYVGTALLTFYAKC 453

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G  E +  +F+ +   + V ++++++GY   G GR +L +   M++  L P++  F  +L
Sbjct: 454 GDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSIL 513

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+H+GM+ EG  +F  +   Y +    +HY+CM+D+L RAG L +A + +Q+ P   D
Sbjct: 514 SACSHTGMIGEGWRLFTMICQDYNLVPSTKHYTCMVDLLARAGRLKEALDFIQKMPVQPD 573

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             ++ + L  C +H    +G      ++EL P D   Y  + N Y+    +    Q+RE 
Sbjct: 574 VSLFGAFLHGCGLHSRFDLGELAIKRMLELHPGDACYYVLMCNLYASDARWSKVKQVREL 633

Query: 646 ALARKLTRDIGHSLIEVNSCH 666
              R L +  G SL+E++  H
Sbjct: 634 MKQRGLMKTPGCSLMEMDVDH 654



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 215/411 (52%), Gaps = 9/411 (2%)

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           S+C N     E   +H  ++  G   +L   + LV LY   G    A  +FD +P  +  
Sbjct: 13  SLCDNINTLME---MHAYLVVQGLTRDLSCSTKLVSLYGSFGRLDLARLVFDTIPHPDFL 69

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W +++R +   S   +++  YN+M+    E + + F ++++ CS     DEG+++H  +
Sbjct: 70  SWKVIIRWYFLNSEFRDIVGFYNRMRVCLKECDNVVFSHVLKACSESRNFDEGRKVHCQI 129

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K G  + + FV   LVD Y+ CG +  ++  FD     +V SW+S+++ Y   +L  D 
Sbjct: 130 VKFG--NPDSFVFTGLVDMYAKCGEIECSRSVFDENLDRNVFSWSSMIAGYVQNNLAQDG 187

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L LF RM+      +  +    ++   + G ++ GK +HGY+ K G + GS ++ +AL D
Sbjct: 188 LVLFNRMREELIEANQITLGILVHACKKLGALHQGKWLHGYLIKCGIELGS-YLVTALLD 246

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           +Y KC V+  + +VF+   G  +    +++     +G  ++A+++F       +  ++VT
Sbjct: 247 LYAKCGVVRDARSVFDELHGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVT 306

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           +++   + S   + NLG  R +H  +IK G    I V+ SL+D Y++C     +  VFE 
Sbjct: 307 IASVFSSCSQLLNLNLG--RSIHGLSIKLGSRDPI-VTNSLVDFYAKCQMNRDARYVFET 363

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           I   +VV + SI++ +S+NG   EAL++   M    ++PD VT + VL+ C
Sbjct: 364 ISDRDVVAWNSIISAFSQNGSAYEALELFHQMRMGSVLPDAVTLVSVLSAC 414



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 80/325 (24%), Positives = 152/325 (46%), Gaps = 2/325 (0%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+  L   C  +  L     L  Y  +   +L  Y     +D + K G +  A+ +FDE+
Sbjct: 205 TLGILVHACKKLGALHQGKWLHGYLIKCGIELGSYLVTALLDLYAKCGVVRDARSVFDEL 264

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
              D+V++  +I G  +   P++AL L+ +     +  +  T +SV S CS       G 
Sbjct: 265 HGIDIVSWTAMIVGYTQNGCPEEALKLFLQKEQVAVLPNDVTIASVFSSCSQLLNLNLGR 324

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            IH   + LG   +  + + LVD Y +   +  A  +F+ + +R++  WN ++ AF +  
Sbjct: 325 SIHGLSIKLG-SRDPIVTNSLVDFYAKCQMNRDARYVFETISDRDVVAWNSIISAFSQNG 383

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E L ++++M+   V P+ ++   ++  C+    L  G   H++ +K G +  N++V 
Sbjct: 384 SAYEALELFHQMRMGSVLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVG 443

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            AL+ FY+ CG    A+  FD +     ++W++++S Y        +L +F  M     +
Sbjct: 444 TALLTFYAKCGDAESARVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELK 503

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQI 335
           P+   F   L+  S TG +  G ++
Sbjct: 504 PNEEIFTSILSACSHTGMIGEGWRL 528



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 47/172 (27%), Positives = 82/172 (47%), Gaps = 7/172 (4%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSA 63
           +LP   T+ ++   C S+  L       +Y      L  N+Y     +  + K G   SA
Sbjct: 400 VLPDAVTLVSVLSACASLNALQVGSSFHAYAVKRGLLSSNVYVGTALLTFYAKCGDAESA 459

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           + +FD M  +  VT++ +ISG G   + + +L ++ +M+   +K +   F+S+LS CS+ 
Sbjct: 460 RVIFDGMDQKSTVTWSAMISGYGIQGNGRGSLSIFGDMLKAELKPNEEIFTSILSACSHT 519

Query: 124 GFYTEGIQIH---CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           G   EG ++    C+  +L      Y  + +VDL  R G    ALD   ++P
Sbjct: 520 GMIGEGWRLFTMICQDYNLVPSTKHY--TCMVDLLARAGRLKEALDFIQKMP 569


>gi|15227623|ref|NP_178437.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75216181|sp|Q9ZQ74.1|PP146_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At2g03380, mitochondrial; Flags: Precursor
 gi|4335760|gb|AAD17437.1| unknown protein [Arabidopsis thaliana]
 gi|330250600|gb|AEC05694.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 689

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 161/606 (26%), Positives = 315/606 (51%), Gaps = 8/606 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+   A+ +FD++P  D   + +++      +   + + LYD ++ HG +     FS  L
Sbjct: 90  GYTKDARLVFDQIPEPDFYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKAL 149

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C+       G +IHC+++ +    N+ + + L+D+Y + G    A  +F+++  RN+ 
Sbjct: 150 KACTELQDLDNGKKIHCQLVKVPSFDNVVL-TGLLDMYAKCGEIKSAHKVFNDITLRNVV 208

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            W  M+  + +    +E L ++N+M+   V  N  ++  ++  C+    L +GK  H  +
Sbjct: 209 CWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCL 268

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K G ++++  +  +L+D Y  CG +  A++ F+     D++ W +++  Y     + +A
Sbjct: 269 VKSG-IELSSCLVTSLLDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEA 327

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L LF +M+    +P+  +    L+      N+  G+ +HG   K+G      +V +AL  
Sbjct: 328 LSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELGRSVHGLSIKVGI--WDTNVANALVH 385

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC     +  VFE    + +   NS+++    +G+I +A+ +F  M  E +  + VT
Sbjct: 386 MYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVT 445

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGF--ESNIAVSCSLMDAYSRCGHIELSHQVF 475
           +++   A +   S  +GS   LH  ++K GF   S++ V  +L+D Y++CG  + +  +F
Sbjct: 446 VASLFSACASLGSLAVGSS--LHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSARLIF 503

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           + I   N + +++++ GY + G    +L++ E M+++   P++ TF  +L+ C H+GMV 
Sbjct: 504 DTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKKQQKPNESTFTSILSACGHTGMVN 563

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG+  F+SM   Y      +HY+CM+DML RAG L++A +++++ P   D   + + L  
Sbjct: 564 EGKKYFSSMYKDYNFTPSTKHYTCMVDMLARAGELEQALDIIEKMPIQPDVRCFGAFLHG 623

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           C +H    +G  V   +++L P D + Y  VSN Y+  G +  + ++R     R L++  
Sbjct: 624 CGMHSRFDLGEIVIKKMLDLHPDDASYYVLVSNLYASDGRWNQAKEVRNLMKQRGLSKIA 683

Query: 656 GHSLIE 661
           GHS +E
Sbjct: 684 GHSTME 689



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 130/500 (26%), Positives = 247/500 (49%), Gaps = 12/500 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D + K G + SA K+F+++  R++V +  +I+G  K    ++ L L++ M  + +  + 
Sbjct: 183 LDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCEEGLVLFNRMRENNVLGNE 242

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T+ +++  C+      +G   H  ++  G  L+  + + L+D+Y++ G    A  +F+E
Sbjct: 243 YTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTSLLDMYVKCGDISNARRVFNE 302

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
               +L  W  M+  +      +E L ++ KMK   ++PN ++   ++ GC +   L+ G
Sbjct: 303 HSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNCVTIASVLSGCGLIENLELG 362

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           + +H   IK+G  D N  VANALV  Y+ C    +AK  F+     D+++WNSI+S ++ 
Sbjct: 363 RSVHGLSIKVGIWDTN--VANALVHMYAKCYQNRDAKYVFEMESEKDIVAWNSIISGFSQ 420

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-DHGSV 349
              I +AL LF RM      P+  +     +  +  G++  G  +H Y  KLGF    SV
Sbjct: 421 NGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSLAVGSSLHAYSVKLGFLASSSV 480

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
           HV +AL D Y KC   +S+  +F++   ++    ++++      G+   ++E+F  M+ +
Sbjct: 481 HVGTALLDFYAKCGDPQSARLIFDTIEEKNTITWSAMIGGYGKQGDTIGSLELFEEMLKK 540

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
               +E T ++ L A   +   N G  +          F  +      ++D  +R G +E
Sbjct: 541 QQKPNESTFTSILSACGHTGMVNEGK-KYFSSMYKDYNFTPSTKHYTCMVDMLARAGELE 599

Query: 470 LSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR--GLIPDKVTFLCVLA 526
            +  + EK+P  P+V CF + ++G    GM     D+ E++I++   L PD  ++  +++
Sbjct: 600 QALDIIEKMPIQPDVRCFGAFLHGC---GM-HSRFDLGEIVIKKMLDLHPDDASYYVLVS 655

Query: 527 GCNHS-GMVKEGQLVFNSMK 545
               S G   + + V N MK
Sbjct: 656 NLYASDGRWNQAKEVRNLMK 675



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 130/490 (26%), Positives = 236/490 (48%), Gaps = 13/490 (2%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +LS C+N        Q H  +   G   ++ I + LV LY   G +  A  +FD++PE +
Sbjct: 50  LLSKCTNIDSLR---QSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPD 106

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
              W +MLR +C      EV+++Y+ +   G   + + F   ++ C+    LD GK++H 
Sbjct: 107 FYLWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHC 166

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            ++K+   D N+ V   L+D Y+ CG +  A K F+ I + +V+ W S+++ Y   DL  
Sbjct: 167 QLVKVPSFD-NV-VLTGLLDMYAKCGEIKSAHKVFNDITLRNVVCWTSMIAGYVKNDLCE 224

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           + L LF RM+      +  ++   +   ++   ++ GK  HG + K G +  S  V S L
Sbjct: 225 EGLVLFNRMRENNVLGNEYTYGTLIMACTKLSALHQGKWFHGCLVKSGIELSSCLVTS-L 283

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMY KC  I ++  VF       L    +++    H+G++ +A+ +F  M    I  + 
Sbjct: 284 LDMYVKCGDISNARRVFNEHSHVDLVMWTAMIVGYTHNGSVNEALSLFQKMKGVEIKPNC 343

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIELSHQV 474
           VT+++ L    +  +  LG  R +H  +IK G +++N+A   +L+  Y++C     +  V
Sbjct: 344 VTIASVLSGCGLIENLELG--RSVHGLSIKVGIWDTNVA--NALVHMYAKCYQNRDAKYV 399

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           FE     ++V + SI++G+S+NG   EAL +   M    + P+ VT   + + C   G +
Sbjct: 400 FEMESEKDIVAWNSIISGFSQNGSIHEALFLFHRMNSESVTPNGVTVASLFSACASLGSL 459

Query: 535 KEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             G  L   S+K  +   +     + ++D   + G    A  L+  T    + + WS+++
Sbjct: 460 AVGSSLHAYSVKLGFLASSSVHVGTALLDFYAKCGDPQSA-RLIFDTIEEKNTITWSAMI 518

Query: 594 RSCRVHGNEI 603
                 G+ I
Sbjct: 519 GGYGKQGDTI 528



 Score = 46.6 bits (109), Expect = 0.040,   Method: Compositional matrix adjust.
 Identities = 31/154 (20%), Positives = 67/154 (43%), Gaps = 2/154 (1%)

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           L +S   N+ S R  H     +G   +I+++  L+  Y   G+ + +  VF++IP P+  
Sbjct: 49  LLLSKCTNIDSLRQSHGVLTGNGLMGDISIATKLVSLYGFFGYTKDARLVFDQIPEPDFY 108

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +  ++  Y  N    E + + +++++ G   D + F   L  C     +  G+ +   +
Sbjct: 109 LWKVMLRCYCLNKESVEVVKLYDLLMKHGFRYDDIVFSKALKACTELQDLDNGKKIHCQL 168

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
             V     D    + ++DM  + G +  A ++  
Sbjct: 169 VKVPSF--DNVVLTGLLDMYAKCGEIKSAHKVFN 200


>gi|224135349|ref|XP_002322051.1| predicted protein [Populus trichocarpa]
 gi|222869047|gb|EEF06178.1| predicted protein [Populus trichocarpa]
          Length = 924

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 180/624 (28%), Positives = 322/624 (51%), Gaps = 8/624 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++  N  +  + K G ++ A K+FD MP  ++V++N +I    +    + +  L  EM
Sbjct: 179 LDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLLMEM 238

Query: 102 V-SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +   G+     T  ++L VC+  G    G+ IH   + LG    + + + +V +Y + G 
Sbjct: 239 LGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGY 298

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE--PNGLSFCYMV 218
              A   F +   +N+ +WN M+ AF      +E   +  +M+ +G E   N ++   ++
Sbjct: 299 LNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVL 358

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C   + L   K+LH +  +  +  V +  +NA +  Y+ CG+L  A+K F  I    V
Sbjct: 359 PACLDKLQLRSLKELHGYSFRHCFQHVEL--SNAFILAYAKCGALNSAEKVFHGIGDKTV 416

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            SWN+++  +A       AL L F+M    ++P   +    L   +   ++ +GK+IHGY
Sbjct: 417 SSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGY 476

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V + G +     V ++L   Y  C    S+  +F+    ++L   N++++    +G   +
Sbjct: 477 VLRNGLE-TDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYE 535

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           ++ +F   + EGI   E+ + +   A S  ++  LG  +  H   +K+    +  V CS+
Sbjct: 536 SLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLG--KEAHGYVLKALQTEDAFVGCSI 593

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++ G I+ S +VF+ +   NV  + +I+  +  +G G+EA+++ E M + G +PD+
Sbjct: 594 IDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDR 653

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            T++ +L  C H+G+V+EG   F  M++   I+   +HY+C+IDML RAG LD A  L+ 
Sbjct: 654 FTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRLVN 713

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           + P   D  +WSSLLRSCR  G   IG +VA  L+ELEP     Y  +SN Y+ +G+++ 
Sbjct: 714 EMPEEADNRIWSSLLRSCRTFGALEIGEKVAKKLLELEPDKAENYVLLSNLYAGLGKWDG 773

Query: 639 SMQIRETALARKLTRDIGHSLIEV 662
             ++R+      L +D G S IEV
Sbjct: 774 VRRVRQMMKEIGLQKDAGCSWIEV 797



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 135/561 (24%), Positives = 272/561 (48%), Gaps = 15/561 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-G 105
           + R I  +   G    ++ +FD M  ++++ +N L+SG  +       + ++ ++VS   
Sbjct: 82  NTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTD 141

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
            +    TF SV+  C        G  IH  V+ +G  L++++G+ LV +Y + G    A+
Sbjct: 142 FQPDNFTFPSVIKACGGILDVRLGEVIHGMVIKMGLVLDVFVGNALVGMYGKCGAVDEAM 201

Query: 166 DLFDELPERNLATWNLMLRAFCE--LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
            +FD +PE NL +WN M+ AF E   SR D    +   +  EG+ P+ ++   ++  C+ 
Sbjct: 202 KVFDFMPETNLVSWNSMICAFSENGFSR-DSFDLLMEMLGEEGLLPDVVTVVTILPVCAG 260

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +D G  +H   +KLG +   + V NA+V  YS CG L EA+ SF      +V+SWN+
Sbjct: 261 EGEVDIGMGIHGLAVKLG-LSEEVMVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNT 319

Query: 284 IVSIYADYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++S ++    + +A  L   MQ+  +  + +  + +  L        +   K++HGY  +
Sbjct: 320 MISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLDKLQLRSLKELHGYSFR 379

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             F H  V + +A    Y KC  + S+  VF     +++   N+L+     +G+ + A+ 
Sbjct: 380 HCFQH--VELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALH 437

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +   M   G   D  T+S+ L A +   S   G  + +H   +++G E++  V  SL+  
Sbjct: 438 LLFQMTYSGQQPDWFTISSLLLACAHLKSLQYG--KEIHGYVLRNGLETDFFVGTSLLSH 495

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y  CG    +  +F+++   N+V + ++++GYS+NG+  E+L +    +  G+   ++  
Sbjct: 496 YIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLALFRKSLSEGIQSHEIAI 555

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQQT 580
           + V   C+    ++ G+     +  +  +  +     C +IDM  ++G + ++ ++    
Sbjct: 556 VSVFGACSQLSALRLGKEAHGYV--LKALQTEDAFVGCSIIDMYAKSGCIKESRKVFDGL 613

Query: 581 PGGGDCMMWSSLLRSCRVHGN 601
               +   W++++ +  +HG+
Sbjct: 614 K-DKNVASWNAIIVAHGIHGH 633



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 215/431 (49%), Gaps = 16/431 (3%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI-GSPLVDLYMRMGPSVRALDLFDELPER 174
           +L  C N      G ++H  V       N Y+  + L+ +Y   G  + +  +FD +  +
Sbjct: 49  LLQACGNQKDIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETK 108

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDE--GK 231
           NL  WN ++  +       +V++++  + ++   +P+  +F  +++ C  G +LD   G+
Sbjct: 109 NLIQWNALVSGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKAC--GGILDVRLGE 166

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +H  VIK+G V +++FV NALV  Y  CG++ EA K FDF+P  +++SWNS++  +++ 
Sbjct: 167 VIHGMVIKMGLV-LDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSEN 225

Query: 292 DLIFDALELFFRMQLCRKR--PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
               D+ +L   M L  +   P + + V  L   +  G V  G  IHG   KLG     V
Sbjct: 226 GFSRDSFDLLMEM-LGEEGLLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSE-EV 283

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V +A+  MY KC  +  +   F     +++   N+++++    G++ +A  +   M  +
Sbjct: 284 MVNNAMVYMYSKCGYLNEAQMSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQ 343

Query: 410 G--IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           G  +  +EVT+   L A        L S + LH  + +  F+ ++ +S + + AY++CG 
Sbjct: 344 GEEMKANEVTILNVLPA--CLDKLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGA 400

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +  + +VF  I    V  + +++ G+++NG  R+AL +L  M   G  PD  T   +L  
Sbjct: 401 LNSAEKVFHGIGDKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLA 460

Query: 528 CNHSGMVKEGQ 538
           C H   ++ G+
Sbjct: 461 CAHLKSLQYGK 471



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/391 (26%), Positives = 189/391 (48%), Gaps = 4/391 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           TI  + P C   + L S   L  Y   +   ++  SN  I  + K G LNSA+K+F  + 
Sbjct: 353 TILNVLPACLDKLQLRSLKELHGYSFRHCFQHVELSNAFILAYAKCGALNSAEKVFHGIG 412

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            + + ++N LI G  +   P++AL+L  +M   G +    T SS+L  C++      G +
Sbjct: 413 DKTVSSWNALIGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKE 472

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH  VL  G   + ++G+ L+  Y+  G +  A  LFD + ++NL +WN M+  + +   
Sbjct: 473 IHGYVLRNGLETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGL 532

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
           P E L ++ K  +EG++ + ++   +   CS    L  GK+ H +V+K    + + FV  
Sbjct: 533 PYESLALFRKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLKALQTE-DAFVGC 591

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           +++D Y+  G + E++K FD +   +V SWN+I+  +  +    +A+EL+ RM+   + P
Sbjct: 592 SIIDMYAKSGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMP 651

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              +++  L      G V  G +    +         +   + L DM  +   ++ ++ +
Sbjct: 652 DRFTYIGILMACGHAGLVEEGLKYFKEMQNFNLIEPKLEHYACLIDMLARAGRLDDALRL 711

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
               P    E  N + +SLL S     A+E+
Sbjct: 712 VNEMPE---EADNRIWSSLLRSCRTFGALEI 739



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 99/423 (23%), Positives = 192/423 (45%), Gaps = 8/423 (1%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           LLP V T+ T+ P C     +   + +     +      +  +N  +  + K G+LN A+
Sbjct: 244 LLPDVVTVVTILPVCAGEGEVDIGMGIHGLAVKLGLSEEVMVNNAMVYMYSKCGYLNEAQ 303

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG--IKESASTFSSVLSVCSN 122
             F +   +++V++N +IS         +A  L  EM   G  +K +  T  +VL  C +
Sbjct: 304 MSFVKNNNKNVVSWNTMISAFSLEGDVNEAFNLLQEMQIQGEEMKANEVTILNVLPACLD 363

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                   ++H       F  ++ + +  +  Y + G    A  +F  + ++ +++WN +
Sbjct: 364 KLQLRSLKELHGYSFRHCFQ-HVELSNAFILAYAKCGALNSAEKVFHGIGDKTVSSWNAL 422

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +    +   P + L +  +M   G +P+  +   ++  C+    L  GK++H +V++ G 
Sbjct: 423 IGGHAQNGDPRKALHLLFQMTYSGQQPDWFTISSLLLACAHLKSLQYGKEIHGYVLRNG- 481

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           ++ + FV  +L+  Y  CG    A+  FD +   +++SWN+++S Y+   L +++L L F
Sbjct: 482 LETDFFVGTSLLSHYIHCGKASSARVLFDRMKDKNLVSWNAMISGYSQNGLPYESLAL-F 540

Query: 303 RMQLCRKRPSIR-SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           R  L     S   + V      S+   +  GK+ HGYV K         V  ++ DMY K
Sbjct: 541 RKSLSEGIQSHEIAIVSVFGACSQLSALRLGKEAHGYVLK-ALQTEDAFVGCSIIDMYAK 599

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
              I+ S  VF+    +++   N+++ +    G+ K+A+E++  M   G   D  T    
Sbjct: 600 SGCIKESRKVFDGLKDKNVASWNAIIVAHGIHGHGKEAIELYERMKKVGQMPDRFTYIGI 659

Query: 422 LKA 424
           L A
Sbjct: 660 LMA 662



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 69/291 (23%), Positives = 142/291 (48%), Gaps = 9/291 (3%)

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           ++  G+++H +V+          + + L  MY  C     S  VF++   ++L   N+L+
Sbjct: 58  DIETGRRLHKFVSDSTHYRNDYVLNTRLIKMYAMCGSPLDSRLVFDNMETKNLIQWNALV 117

Query: 388 TSLLHSGNIKDAVEMFGFMV-DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +    +G   D V++F  +V D     D  T  + +KA        LG   ++H   IK 
Sbjct: 118 SGYTRNGLYGDVVKVFMDLVSDTDFQPDNFTFPSVIKACGGILDVRLG--EVIHGMVIKM 175

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G   ++ V  +L+  Y +CG ++ + +VF+ +P  N+V + S++  +S NG  R++ D+L
Sbjct: 176 GLVLDVFVGNALVGMYGKCGAVDEAMKVFDFMPETNLVSWNSMICAFSENGFSRDSFDLL 235

Query: 507 -EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            E++ + GL+PD VT + +L  C   G V  G +  + +    G+  +    + M+ M  
Sbjct: 236 MEMLGEEGLLPDVVTVVTILPVCAGEGEVDIG-MGIHGLAVKLGLSEEVMVNNAMVYMYS 294

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           + G L++A+    +     + + W++++ +  + G+        N+L E++
Sbjct: 295 KCGYLNEAQMSFVKN-NNKNVVSWNTMISAFSLEGDV---NEAFNLLQEMQ 341


>gi|302790389|ref|XP_002976962.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
 gi|300155440|gb|EFJ22072.1| hypothetical protein SELMODRAFT_106096 [Selaginella moellendorffii]
          Length = 1108

 Score =  282 bits (721), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 178/624 (28%), Positives = 322/624 (51%), Gaps = 12/624 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++   N  I  + K G  ++A  +F  +  + D++++N ++      +   + +  +  M
Sbjct: 369 DVVIGNAIISMYAKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGKVVNTFHHM 428

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG-LNLYIGSPLVDLYMRMGP 160
           +  GI  +  +F ++L+ CSN+     G +IH  +L+     +   + + LV +Y + G 
Sbjct: 429 LLAGIDPNKVSFIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGS 488

Query: 161 SVRALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
              A  +F E  LP R+L TWN+ML A+ +  R  E      +M   GV P+ LSF  ++
Sbjct: 489 ISEAELVFKEMPLPSRSLVTWNVMLGAYAQNDRSKEAFGALMEMLQGGVLPDALSFTSVL 548

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C       E + L   +++ G+    +    AL+  +  C  L +A+  F+ +   DV
Sbjct: 549 SSCYCS---QEAQVLRMCILESGYRSACL--ETALISMHGRCRELEQARSVFNEMDHGDV 603

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW ++VS  A+     +   LF RMQL    P   +    L+    +  +  GK IH  
Sbjct: 604 VSWTAMVSATAENRDFKEVHNLFRRMQLEGVIPDKFTLATTLDTCLASTTLGLGKVIHAC 663

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           VT++G +   + V++AL +MY  C     +++ FE+   R L   N +  +   +G  K+
Sbjct: 664 VTEIGLE-ADIAVENALLNMYSNCGDWREALSFFETMKARDLVSWNIMSAAYAQAGLAKE 722

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           AV +F  M  EG+  D++T STTL     SA  + G  +L H  A +SG +S+++V+  L
Sbjct: 723 AVLLFRQMQLEGVKPDKLTFSTTLNVSGGSALVSDG--KLFHALAAESGLDSDVSVATGL 780

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y++CG ++ +  +F       VV   +I+   +++G   EA+ M   M Q G+ PD 
Sbjct: 781 VKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIGALAQHGFSEEAVKMFWKMQQEGVRPDV 840

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            T + +++ C H+GMV+EG   F +MK  +GI    +HY+C +D+LGRAG L+ AE++++
Sbjct: 841 ATLVSIISACGHAGMVEEGCSSFLTMKEYFGISPTLEHYACFVDLLGRAGQLEHAEQIIR 900

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           + P   + ++W+SLL +C++ G+  +G R A  ++EL+P + A +  +SN Y   G+++ 
Sbjct: 901 KMPFEDNTLVWTSLLGTCKLQGDAELGERCAQRILELDPHNSAAHVVLSNIYCATGKWKD 960

Query: 639 SMQIRETALARKLTRDIGHSLIEV 662
           +   R+  L   +    G S  E+
Sbjct: 961 ADVDRKKMLDENVKNAPGMSWFEI 984



 Score =  199 bits (506), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 152/589 (25%), Positives = 290/589 (49%), Gaps = 25/589 (4%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS--SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSG 58
           ML   L P V T  T    CTS+   +   SLL ++    +P     +SN  I+ + K G
Sbjct: 224 MLLQPLAPNVITFITALGACTSLRDGTWLHSLLHEASLGFDP----LASNALINMYGKCG 279

Query: 59  HLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
               A  +F  M +R   D+V++N +IS   +      A+ ++  +   G++ ++ T  +
Sbjct: 280 DWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLIT 339

Query: 116 VLSVCSNAGF-YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           +L+  + +G  +      H R+   G+  ++ IG+ ++ +Y + G    A  +F  +  +
Sbjct: 340 ILNALAASGVDFGAARGFHGRIWESGYLRDVVIGNAIISMYAKCGFFSAAWAVFRRIRWK 399

Query: 175 -NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ +WN ML A  +     +V+  ++ M   G++PN +SF  ++  CS    LD G+++
Sbjct: 400 CDVISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFGRKI 459

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DDVISWNSIVSIYADY 291
           HS ++      V   VA  LV  Y  CGS+ EA+  F  +P+    +++WN ++  YA  
Sbjct: 460 HSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYAQN 519

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLN--FASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           D   +A      M      P   SF   L+  + S+   V     +   + + G+   S 
Sbjct: 520 DRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCSQEAQV-----LRMCILESGYR--SA 572

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            +++AL  M+G+C  +E + +VF       +    +++++   + + K+   +F  M  E
Sbjct: 573 CLETALISMHGRCRELEQARSVFNEMDHGDVVSWTAMVSATAENRDFKEVHNLFRRMQLE 632

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G+  D+ TL+TTL   +  AS  LG  +++H C  + G E++IAV  +L++ YS CG   
Sbjct: 633 GVIPDKFTLATTLD--TCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWR 690

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +   FE + + ++V +  +   Y++ G+ +EA+ +   M   G+ PDK+TF   L    
Sbjct: 691 EALSFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSG 750

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            S +V +G+L F+++ +  G+D+D    + ++ +  + G LD+A  L +
Sbjct: 751 GSALVSDGKL-FHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFR 798



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 168/674 (24%), Positives = 312/674 (46%), Gaps = 89/674 (13%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYL 97
           + +++  N  I+ +V+ G L  A  +F +M  R++V++  LIS    CG F    +A  L
Sbjct: 57  EQHLFLGNCLINMYVRCGSLEEAHAIFSKMEERNVVSWTALISANAQCGAF---ARAFAL 113

Query: 98  YDEMVSHGIKESAS----TFSSVLSVCSNAGFYTEGIQIHCRVLSLGF----GLNLYIGS 149
           +  M+   ++ SA+    T  ++L+ C+N+     G  IH  +  LG          +G+
Sbjct: 114 FRTML---LESSAAPNSYTLVAMLNACANSRDLAIGRSIHAMIWELGLERASTTATLVGN 170

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR--PDEVLRMYNKMKAEGV 207
            ++++Y + G    A+ +F  +PE+++ +W  M  A+ +  R  PD  LR++ +M  + +
Sbjct: 171 AMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAYAQERRFYPD-ALRIFREMLLQPL 229

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHS--HVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            PN ++F   +  C+    L +G  LHS  H   LG+   +   +NAL++ Y  CG    
Sbjct: 230 APNVITFITALGACTS---LRDGTWLHSLLHEASLGF---DPLASNALINMYGKCGDWEG 283

Query: 266 AKKSFDFIPVD---DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
           A   F  +      D++SWN+++S   +     DA+ +F R++L   RP+  + +  LN 
Sbjct: 284 AYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAIFRRLRLEGMRPNSVTLITILNA 343

Query: 323 ASRTGNVYFG--KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-S 379
            + +G V FG  +  HG + + G+    V + +A+  MY KC    ++ AVF     +  
Sbjct: 344 LAASG-VDFGAARGFHGRIWESGYLRDVV-IGNAIISMYAKCGFFSAAWAVFRRIRWKCD 401

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   N+++ +     +    V  F  M+  GI  ++V+    L A S S + + G  R +
Sbjct: 402 VISWNTMLGASEDRKSFGKVVNTFHHMLLAGIDPNKVSFIAILNACSNSEALDFG--RKI 459

Query: 440 HCCAI---KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP--NVVCFTSIMNGYS 494
           H   +   +   ES++A    L+  Y +CG I  +  VF+++P P  ++V +  ++  Y+
Sbjct: 460 HSLILTRRRDYVESSVAT--MLVSMYGKCGSISEAELVFKEMPLPSRSLVTWNVMLGAYA 517

Query: 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ-LVFNSMKSVYGIDAD 553
           +N   +EA   L  M+Q G++PD ++F  VL+ C  S   +E Q L    ++S Y     
Sbjct: 518 QNDRSKEAFGALMEMLQGGVLPDALSFTSVLSSCYCS---QEAQVLRMCILESGYRSACL 574

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL--------------------- 592
               + +I M GR   L++A  +  +    GD + W+++                     
Sbjct: 575 E---TALISMHGRCRELEQARSVFNEMD-HGDVVSWTAMVSATAENRDFKEVHNLFRRMQ 630

Query: 593 --------------LRSCRVHGNEIIGRRVANILMELE-PVDFAVYSQVSNFYSEIGEFE 637
                         L +C       +G+ +   + E+    D AV + + N YS  G++ 
Sbjct: 631 LEGVIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWR 690

Query: 638 VSMQIRETALARKL 651
            ++   ET  AR L
Sbjct: 691 EALSFFETMKARDL 704



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/481 (25%), Positives = 238/481 (49%), Gaps = 20/481 (4%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           ++++L  C ++    +G   H  + + G   +L++G+ L+++Y+R G    A  +F ++ 
Sbjct: 28  YTALLQSCVDSNDLAKGKHAHELIANAGLEQHLFLGNCLINMYVRCGSLEEAHAIFSKME 87

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGK 231
           ERN+ +W  ++ A  +         ++  M  E    PN  +   M+  C+    L  G+
Sbjct: 88  ERNVVSWTALISANAQCGAFARAFALFRTMLLESSAAPNSYTLVAMLNACANSRDLAIGR 147

Query: 232 QLHSHVIKLGWVDVN---IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            +H+ + +LG    +     V NA+++ Y+ CGSL +A   F  IP  DV+SW ++   Y
Sbjct: 148 SIHAMIWELGLERASTTATLVGNAMINMYAKCGSLEDAIAVFLAIPEKDVVSWTAMAGAY 207

Query: 289 ADYDLIF-DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFD 345
           A     + DAL +F  M L    P++ +F+  L   +   +   G  +H  +    LGFD
Sbjct: 208 AQERRFYPDALRIFREMLLQPLAPNVITFITALGACTSLRD---GTWLHSLLHEASLGFD 264

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS---LECCNSLMTSLLHSGNIKDAVEM 402
             +    +AL +MYGKC   E + +VF++   R    L   N+++++ + +G   DA+ +
Sbjct: 265 PLA---SNALINMYGKCGDWEGAYSVFKAMASRQELDLVSWNAMISASVEAGRHGDAMAI 321

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  +  EG+  + VTL T L AL+ S   + G+ R  H    +SG+  ++ +  +++  Y
Sbjct: 322 FRRLRLEGMRPNSVTLITILNALAASG-VDFGAARGFHGRIWESGYLRDVVIGNAIISMY 380

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS--RNGMGREALDMLEVMIQRGLIPDKVT 520
           ++CG    +  VF +I     V   + M G S  R   G+  ++    M+  G+ P+KV+
Sbjct: 381 AKCGFFSAAWAVFRRIRWKCDVISWNTMLGASEDRKSFGK-VVNTFHHMLLAGIDPNKVS 439

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ +L  C++S  +  G+ + + + +      +    + ++ M G+ G + +AE + ++ 
Sbjct: 440 FIAILNACSNSEALDFGRKIHSLILTRRRDYVESSVATMLVSMYGKCGSISEAELVFKEM 499

Query: 581 P 581
           P
Sbjct: 500 P 500



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 61/282 (21%), Positives = 126/282 (44%), Gaps = 2/282 (0%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDS-YCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           ++P   T+ T   TC +   L    ++ +   +   + +I   N  ++ +   G    A 
Sbjct: 634 VIPDKFTLATTLDTCLASTTLGLGKVIHACVTEIGLEADIAVENALLNMYSNCGDWREAL 693

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
             F+ M ARD+V++N++ +   +    K+A+ L+ +M   G+K    TFS+ L+V   + 
Sbjct: 694 SFFETMKARDLVSWNIMSAAYAQAGLAKEAVLLFRQMQLEGVKPDKLTFSTTLNVSGGSA 753

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
             ++G   H      G   ++ + + LV LY + G    A+ LF    +  +   N ++ 
Sbjct: 754 LVSDGKLFHALAAESGLDSDVSVATGLVKLYAKCGKLDEAMSLFRGACDWTVVLLNAIIG 813

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           A  +    +E ++M+ KM+ EGV P+  +   ++  C    +++EG      + +   + 
Sbjct: 814 ALAQHGFSEEAVKMFWKMQQEGVRPDVATLVSIISACGHAGMVEEGCSSFLTMKEYFGIS 873

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDD-VISWNSIV 285
             +      VD     G L  A++    +P +D  + W S++
Sbjct: 874 PTLEHYACFVDLLGRAGQLEHAEQIIRKMPFEDNTLVWTSLL 915


>gi|297740913|emb|CBI31095.3| unnamed protein product [Vitis vinifera]
          Length = 768

 Score =  281 bits (720), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 175/633 (27%), Positives = 312/633 (49%), Gaps = 53/633 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NIY  N  +  + K   +  A + F ++P  + V++  ++ G        +A  L+  M+
Sbjct: 142 NIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLML 201

Query: 103 SHGIKESASTFSSVLSVCSNAG--------------FYTEGIQIHCRVLSLGFGLNLYIG 148
            + I   + + SSVL VCS  G                  G Q+HC  +  GF  +L++ 
Sbjct: 202 RNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLN 261

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + L+D+Y + G    A  +F  +PE ++ +WN+M+  + + S+  + +    +M+  G E
Sbjct: 262 NSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFE 321

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+ +++  M+  C     ++ G+Q+                                   
Sbjct: 322 PDEITYVNMLVACIKSGDIEAGRQM----------------------------------- 346

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +    + SWN+I+S Y+  +   +A++LF  MQ     P   +    L+  +    
Sbjct: 347 -FDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMML 405

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  G+Q+H    K  F    +++ S L  MY KC  +E +  +F+      + C NS+M 
Sbjct: 406 LEGGRQVHAVSQKAVF-RTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMA 464

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
            L  +   K+A   F  M ++G+   + + +T L   +  +S + G  R +H    + G+
Sbjct: 465 GLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQG--RQVHSQIAREGY 522

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            ++  V  +L+D YS+CG ++ +  VF+ +   N V +  +++GY++NG G EA+ + E 
Sbjct: 523 MNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYED 582

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           MI  G  PD +TF+ VL  C+HSG+V  G  +FNSM+  +G++    HY+C+ID LGRAG
Sbjct: 583 MIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAG 642

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
            L +AE L+ + P   D ++W  LL SCRV+ +  + RR A  L  L+P + A Y  ++N
Sbjct: 643 RLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLAN 702

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            YS +G ++ +  +RE     ++ +D G+S IE
Sbjct: 703 IYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 735



 Score =  176 bits (446), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 137/575 (23%), Positives = 267/575 (46%), Gaps = 59/575 (10%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + + SNR I+ + K   ++++++LFD+MP RD+ T+N ++    K    + A  L+ EM 
Sbjct: 39  DTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMP 98

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTE---GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
              I  S +T  S L+     G   +   G + H   + +G   N+Y+G+ L+ +Y +  
Sbjct: 99  ERNIV-SWNTLISALTRNGACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCR 157

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A+  F ++PE N  ++  M+    +  + +E  R++  M    +  + +S   ++ 
Sbjct: 158 CIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLG 217

Query: 220 GCSIG-----MLLD---------EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            CS G      L D          G+Q+H   IK G+ + ++ + N+L+D Y+  G++  
Sbjct: 218 VCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGF-ESDLHLNNSLLDMYAKNGNMDS 276

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+  F  +P   V+SWN +++ Y        A+E   RMQ     P   ++V  L    +
Sbjct: 277 AEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIK 336

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
           +G++  G+Q+                                    F+     SL   N+
Sbjct: 337 SGDIEAGRQM------------------------------------FDGMSSPSLSSWNT 360

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++    + N K+AV++F  M    +  D  TL+  L +L  +    L   R +H  + K
Sbjct: 361 ILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSL--AGMMLLEGGRQVHAVSQK 418

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           + F ++I ++  L+  YS+CG +E++ ++F++I   ++VC+ S+M G S N + +EA   
Sbjct: 419 AVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTF 478

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            + M ++G+ P + ++  VL+ C     + +G+ V +S  +  G   D    S +IDM  
Sbjct: 479 FKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQV-HSQIAREGYMNDAFVGSALIDMYS 537

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + G +D A  +      G + + W+ ++     +G
Sbjct: 538 KCGDVDAARWVFDMML-GKNTVTWNEMIHGYAQNG 571



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 93/335 (27%), Positives = 175/335 (52%), Gaps = 24/335 (7%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GK +H+H+++    D + F++N L++FY+ C ++  +++ FD +P  D+ +WN+I+  Y 
Sbjct: 24  GKLIHAHMLRSRLSD-DTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYC 82

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG------NVYFGKQIHGYVTKLG 343
               + DA  LF  M       +I S+   ++  +R G      +V  G++ HG   K+G
Sbjct: 83  KASELEDAHVLFAEM----PERNIVSWNTLISALTRNGACGALVDVECGRRCHGISIKIG 138

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            D+ +++V +AL  MY KC  I  ++  F   P  +     ++M  L  S  + +A  +F
Sbjct: 139 LDN-NIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLF 197

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLG------------SCRLLHCCAIKSGFESN 451
             M+   I +D V+LS+ L   S       G              + +HC  IK GFES+
Sbjct: 198 RLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESD 257

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + ++ SL+D Y++ G+++ +  +F  +P  +VV +  ++ GY +     +A++ L+ M  
Sbjct: 258 LHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQY 317

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            G  PD++T++ +L  C  SG ++ G+ +F+ M S
Sbjct: 318 HGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSS 352



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 121/504 (24%), Positives = 228/504 (45%), Gaps = 60/504 (11%)

Query: 108 ESASTF-SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           E+ +T+ +S+L  C +   +  G  IH  +L      + ++ + L++ Y +      +  
Sbjct: 2   ETKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRR 61

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LFD++P+R++ TWN +L A+C+ S  ++   ++ +M    +         + R  + G L
Sbjct: 62  LFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGACGAL 121

Query: 227 LDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           +D   G++ H   IK+G +D NI+V NAL+  Y+ C  + +A ++F  +P  + +S+ ++
Sbjct: 122 VDVECGRRCHGISIKIG-LDNNIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAM 180

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF------------- 331
           +   AD D + +A  LF  M   R      S    L   SR G   F             
Sbjct: 181 MGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDV 240

Query: 332 -GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G+Q+H    K GF+   +H+ ++L DMY K   ++S+  +F + P  S+   N ++   
Sbjct: 241 HGQQVHCLTIKHGFE-SDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGY 299

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
                   A+E    M   G   DE+T                                 
Sbjct: 300 GQKSQSSKAIEYLQRMQYHGFEPDEITY-------------------------------V 328

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           N+ V+C       + G IE   Q+F+ + SP++  + +I++GYS+N   +EA+ +   M 
Sbjct: 329 NMLVAC------IKSGDIEAGRQMFDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQ 382

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGI 569
            R + PD+ T   +L+      +++ G+ V   S K+V+  D      S +I M  + G 
Sbjct: 383 FRSVHPDRTTLAIILSSLAGMMLLEGGRQVHAVSQKAVFRTDI--YLASGLIGMYSKCGK 440

Query: 570 LDKAEELLQQTPGGGDCMMWSSLL 593
           ++ A+ +  +     D + W+S++
Sbjct: 441 VEMAKRIFDRI-AELDIVCWNSMM 463


>gi|359483750|ref|XP_002269533.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g20770-like [Vitis vinifera]
          Length = 847

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 175/633 (27%), Positives = 312/633 (49%), Gaps = 53/633 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NIY  N  +  + K   +  A + F ++P  + V++  ++ G        +A  L+  M+
Sbjct: 171 NIYVGNALLGMYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLML 230

Query: 103 SHGIKESASTFSSVLSVCSNAG--------------FYTEGIQIHCRVLSLGFGLNLYIG 148
            + I   + + SSVL VCS  G                  G Q+HC  +  GF  +L++ 
Sbjct: 231 RNRIHVDSVSLSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFESDLHLN 290

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + L+D+Y + G    A  +F  +PE ++ +WN+M+  + + S+  + +    +M+  G E
Sbjct: 291 NSLLDMYAKNGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFE 350

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+ +++  M+  C     ++ G+Q+                                   
Sbjct: 351 PDEITYVNMLVACIKSGDIEAGRQM----------------------------------- 375

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +    + SWN+I+S Y+  +   +A++LF  MQ     P   +    L+  +    
Sbjct: 376 -FDGMSSPSLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMML 434

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  G+Q+H    K  F    +++ S L  MY KC  +E +  +F+      + C NS+M 
Sbjct: 435 LEGGRQVHAVSQKAVF-RTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMA 493

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
            L  +   K+A   F  M ++G+   + + +T L   +  +S + G  R +H    + G+
Sbjct: 494 GLSLNSLDKEAFTFFKKMREKGMFPSQFSYATVLSCCAKLSSLSQG--RQVHSQIAREGY 551

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            ++  V  +L+D YS+CG ++ +  VF+ +   N V +  +++GY++NG G EA+ + E 
Sbjct: 552 MNDAFVGSALIDMYSKCGDVDAARWVFDMMLGKNTVTWNEMIHGYAQNGCGDEAVLLYED 611

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           MI  G  PD +TF+ VL  C+HSG+V  G  +FNSM+  +G++    HY+C+ID LGRAG
Sbjct: 612 MIGSGEKPDGITFVAVLTACSHSGLVDTGIKIFNSMQQEHGVEPLVDHYTCIIDSLGRAG 671

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
            L +AE L+ + P   D ++W  LL SCRV+ +  + RR A  L  L+P + A Y  ++N
Sbjct: 672 RLHEAEVLIDKMPCKYDPIIWEVLLSSCRVYADVSLARRAAEELFHLDPQNSAPYVLLAN 731

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            YS +G ++ +  +RE     ++ +D G+S IE
Sbjct: 732 IYSSLGRWDDAKAVRELMSYNQVVKDPGYSWIE 764



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 141/575 (24%), Positives = 267/575 (46%), Gaps = 55/575 (9%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ +IY+ N  +  + K+  L  A  LF EMP R++V++N LIS   +    ++AL +Y 
Sbjct: 67  PKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYY 126

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G   +  T +SVLS C        G + H   + +G   N+Y+G+ L+ +Y +  
Sbjct: 127 RMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIGLDNNIYVGNALLGMYAKCR 186

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A+  F ++PE N  ++  M+    +  + +E  R++  M    +  + +S   ++ 
Sbjct: 187 CIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLG 246

Query: 220 GCSIG-----MLLD---------EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            CS G      L D          G+Q+H   IK G+ + ++ + N+L+D Y+  G++  
Sbjct: 247 VCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGF-ESDLHLNNSLLDMYAKNGNMDS 305

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+  F  +P   V+SWN +++ Y        A+E   RMQ     P   ++V  L    +
Sbjct: 306 AEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIK 365

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
           +G++  G+Q+                                    F+     SL   N+
Sbjct: 366 SGDIEAGRQM------------------------------------FDGMSSPSLSSWNT 389

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++    + N K+AV++F  M    +  D  TL+  L +L  +    L   R +H  + K
Sbjct: 390 ILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSL--AGMMLLEGGRQVHAVSQK 447

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           + F ++I ++  L+  YS+CG +E++ ++F++I   ++VC+ S+M G S N + +EA   
Sbjct: 448 AVFRTDIYLASGLIGMYSKCGKVEMAKRIFDRIAELDIVCWNSMMAGLSLNSLDKEAFTF 507

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            + M ++G+ P + ++  VL+ C     + +G+ V +S  +  G   D    S +IDM  
Sbjct: 508 FKKMREKGMFPSQFSYATVLSCCAKLSSLSQGRQV-HSQIAREGYMNDAFVGSALIDMYS 566

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + G +D A  +      G + + W+ ++     +G
Sbjct: 567 KCGDVDAARWVFDMML-GKNTVTWNEMIHGYAQNG 600



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 176/360 (48%), Gaps = 45/360 (12%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY- 288
           GK +H+H+++    D + F++N L++FY+ C ++  +++ FD +P  D+ +WN+I+  Y 
Sbjct: 24  GKLIHAHMLRSRLSD-DTFLSNRLIEFYAKCNAIDASRRLFDQMPKRDIYTWNAILGAYC 82

Query: 289 -----ADYDLIF-------------------------DALELFFRMQLCRKRPSIRSFVE 318
                 D  ++F                          AL +++RM      P+  +   
Sbjct: 83  KASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKALGVYYRMSREGFVPTHFTLAS 142

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L+      +V  G++ HG   K+G D+ +++V +AL  MY KC  I  ++  F   P  
Sbjct: 143 VLSACGALVDVECGRRCHGISIKIGLDN-NIYVGNALLGMYAKCRCIGDAIQAFGDVPEP 201

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---- 434
           +     ++M  L  S  + +A  +F  M+   I +D V+LS+ L   S       G    
Sbjct: 202 NEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVSLSSVLGVCSRGGCGEFGLHDS 261

Query: 435 --------SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
                     + +HC  IK GFES++ ++ SL+D Y++ G+++ +  +F  +P  +VV +
Sbjct: 262 NDVLSSDVHGQQVHCLTIKHGFESDLHLNNSLLDMYAKNGNMDSAEMIFVNMPEVSVVSW 321

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
             ++ GY +     +A++ L+ M   G  PD++T++ +L  C  SG ++ G+ +F+ M S
Sbjct: 322 NVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYVNMLVACIKSGDIEAGRQMFDGMSS 381



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 123/533 (23%), Positives = 231/533 (43%), Gaps = 89/533 (16%)

Query: 108 ESASTF-SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           E+ +T+ +S+L  C +   +  G  IH  +L      + ++ + L++ Y +      +  
Sbjct: 2   ETKTTYLASLLQTCIDKKAHLAGKLIHAHMLRSRLSDDTFLSNRLIEFYAKCNAIDASRR 61

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEV------------------------------- 195
           LFD++P+R++ TWN +L A+C+ S  ++                                
Sbjct: 62  LFDQMPKRDIYTWNAILGAYCKASELEDAHVLFAEMPERNIVSWNTLISALTRNGFEQKA 121

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L +Y +M  EG  P   +   ++  C   + ++ G++ H   IK+G +D NI+V NAL+ 
Sbjct: 122 LGVYYRMSREGFVPTHFTLASVLSACGALVDVECGRRCHGISIKIG-LDNNIYVGNALLG 180

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            Y+ C  + +A ++F  +P  + +S+ +++   AD D + +A  LF  M   R      S
Sbjct: 181 MYAKCRCIGDAIQAFGDVPEPNEVSFTAMMGGLADSDQVNEAFRLFRLMLRNRIHVDSVS 240

Query: 316 FVEFLNFASRTGNVYFG--------------KQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
               L   SR G   FG              +Q+H    K GF+   +H+ ++L DMY K
Sbjct: 241 LSSVLGVCSRGGCGEFGLHDSNDVLSSDVHGQQVHCLTIKHGFE-SDLHLNNSLLDMYAK 299

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
              ++S+  +F + P  S+   N ++           A+E    M   G   DE+T    
Sbjct: 300 NGNMDSAEMIFVNMPEVSVVSWNVMIAGYGQKSQSSKAIEYLQRMQYHGFEPDEITYV-- 357

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
                                        N+ V+C       + G IE   Q+F+ + SP
Sbjct: 358 -----------------------------NMLVACI------KSGDIEAGRQMFDGMSSP 382

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           ++  + +I++GYS+N   +EA+ +   M  R + PD+ T   +L+      +++ G+ V 
Sbjct: 383 SLSSWNTILSGYSQNENHKEAVKLFREMQFRSVHPDRTTLAIILSSLAGMMLLEGGRQVH 442

Query: 542 N-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             S K+V+  D      S +I M  + G ++ A+ +  +     D + W+S++
Sbjct: 443 AVSQKAVFRTDI--YLASGLIGMYSKCGKVEMAKRIFDRI-AELDIVCWNSMM 492


>gi|356502497|ref|XP_003520055.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 852

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 194/657 (29%), Positives = 319/657 (48%), Gaps = 78/657 (11%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYN----------------------- 79
           +I+ SN+ ++   KSG ++ A++LFD+M  RD  T+N                       
Sbjct: 114 SIFHSNQLLNGLSKSGQIDDARELFDKMLQRDEYTWNTMVSGYANVGRLVEARELFNGFS 173

Query: 80  --------LLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
                    LISG  +F    +A  L+  M   G K S  T  S+L  CS  G   +G  
Sbjct: 174 SRSSITWSSLISGYCRFGRQAEAFDLFKRMRLEGQKPSQYTLGSILRGCSALGLIQKGEM 233

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLATWNLMLRAFCEL 189
           IH  V+  GF  N+Y+ + LVD+Y +      A  LF  L   + N   W  M+  + + 
Sbjct: 234 IHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEILFKGLAFNKGNHVLWTAMVTGYAQN 293

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
               + +  +  M  EGVE N  +F  ++  CS       G+Q+H  +++ G+   N +V
Sbjct: 294 GDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVSAHCFGEQVHGCIVRNGF-GCNAYV 352

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            +ALVD Y+ CG L  AK+  + +  DDV+SWNS++     +    +A+ LF +M     
Sbjct: 353 QSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIVGCVRHGFEEEAILLFKKMHARNM 412

Query: 310 RPSIRSFVEFLN--FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
           +    +F   LN     R      GK +H  V K GF++  + V +AL DMY K   +  
Sbjct: 413 KIDHYTFPSVLNCCIVGRID----GKSVHCLVIKTGFENYKL-VSNALVDMYAKTEDLNC 467

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           + AVFE    + +    SL+T    +G+ +++++ F  M   G+  D+  +++ L A + 
Sbjct: 468 AYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDMRISGVSPDQFIVASILSACAE 527

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
                 G  + +H   IK G  S+++V+ SL+  Y++CG ++ +  +F  +   +V+ +T
Sbjct: 528 LTLLEFG--KQVHSDFIKLGLRSSLSVNNSLVTMYAKCGCLDDADAIFVSMHVRDVITWT 585

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           +++ GY+RNG GR++L                                     F  MK +
Sbjct: 586 ALIVGYARNGKGRDSLK-----------------------------------YFQQMKKI 610

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           YGI+   +HY+CMID+ GR G LD+A+E+L Q     D  +W +LL +CRVHGN  +G R
Sbjct: 611 YGIEPGPEHYACMIDLFGRLGKLDEAKEILNQMDVKPDATVWKALLAACRVHGNLELGER 670

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            A  L ELEP++   Y  +SN Y    +++ + +IR    ++ +T++ G S IE+NS
Sbjct: 671 AATNLFELEPMNAMPYVMLSNMYLAARKWDDAAKIRRLMKSKGITKEPGCSWIEMNS 727



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 103/402 (25%), Positives = 198/402 (49%), Gaps = 7/402 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+ ++   C+++  +    ++  Y   N  + N+Y     +D + K  H++ A+ L
Sbjct: 210 PSQYTLGSILRGCSALGLIQKGEMIHGYVVKNGFESNVYVVAGLVDMYAKCRHISEAEIL 269

Query: 67  FDEMPAR--DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           F  +     + V +  +++G  +     +A+  +  M + G++ +  TF S+L+ CS+  
Sbjct: 270 FKGLAFNKGNHVLWTAMVTGYAQNGDDHKAIEFFRYMHTEGVESNQFTFPSILTACSSVS 329

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
            +  G Q+H  ++  GFG N Y+ S LVD+Y + G    A  + + + + ++ +WN M+ 
Sbjct: 330 AHCFGEQVHGCIVRNGFGCNAYVQSALVDMYAKCGDLGSAKRVLENMEDDDVVSWNSMIV 389

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
                   +E + ++ KM A  ++ +  +F  ++  C +G +  +GK +H  VIK G+ +
Sbjct: 390 GCVRHGFEEEAILLFKKMHARNMKIDHYTFPSVLNCCIVGRI--DGKSVHCLVIKTGFEN 447

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
             + V+NALVD Y+    L  A   F+ +   DVISW S+V+ Y       ++L+ F  M
Sbjct: 448 YKL-VSNALVDMYAKTEDLNCAYAVFEKMFEKDVISWTSLVTGYTQNGSHEESLKTFCDM 506

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           ++    P        L+  +    + FGKQ+H    KLG    S+ V ++L  MY KC  
Sbjct: 507 RISGVSPDQFIVASILSACAELTLLEFGKQVHSDFIKLGL-RSSLSVNNSLVTMYAKCGC 565

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
           ++ + A+F S   R +    +L+     +G  +D+++ F  M
Sbjct: 566 LDDADAIFVSMHVRDVITWTALIVGYARNGKGRDSLKYFQQM 607


>gi|297740651|emb|CBI30833.3| unnamed protein product [Vitis vinifera]
          Length = 709

 Score =  281 bits (720), Expect = 6e-73,   Method: Compositional matrix adjust.
 Identities = 176/547 (32%), Positives = 297/547 (54%), Gaps = 18/547 (3%)

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF-DELPERNLATWNLMLRA 185
           ++G +IH  +L  GF  +    + L+++Y +      AL +F D   E N+  +N ++  
Sbjct: 54  SKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISG 113

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD--EGKQLHSHVIKLGWV 243
           F     P+E    Y KM+ EGV P+  +F      C+I   LD  E K++H  + K G +
Sbjct: 114 FITNGFPEEGFEFYQKMRNEGVIPDKFTF-----PCAIKACLDVLEIKKIHGLLFKFG-L 167

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           ++++F+ +ALV+ Y   G +  A+ +F+ +P+ DV+ WN++V+ YA        LE F R
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M      PS  +    L+  +  G++  G+ IHG+  K+G+D G V V ++L DMYGKC 
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSG-VAVSNSLIDMYGKCK 286

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            IE ++ +FE    + +   NS+++     G+    + +   M+  GI  D VT++T L 
Sbjct: 287 CIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLP 346

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESN------IAVSCSLMDAYSRCGHIELSHQVFEK 477
           A S  A+   G  R +H   I SG   +      + +  +++D Y++CG +  +H VFE+
Sbjct: 347 ACSHLAALMHG--REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFER 404

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           + + +V  +  ++ GY  +G G EAL+M   M +  L PD+VTF+ VL+ C+H+G V +G
Sbjct: 405 MSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQG 464

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           +     MKS Y +    +HY+C+IDMLGRAG LD+A EL    P   + ++W +LL +CR
Sbjct: 465 RNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACR 524

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           +H + ++    A  + ELEP     Y  +SN Y  +G +E  +++R T   + + +  G 
Sbjct: 525 LHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGC 584

Query: 658 SLIEVNS 664
           S IE+ +
Sbjct: 585 SWIELKN 591



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 157/300 (52%), Gaps = 7/300 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++  +  ++ ++K G +  A+  F+E+P RD+V +N +++G  +    +  L  +  
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +  S  T + VLSV +  G    G  IH   + +G+   + + + L+D+Y +   
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL++F+ + E+++ +WN ++    +    D  LR+ ++M   G++P+ ++   ++  
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPA 347

Query: 221 CSIGMLLDEGKQLHSHVIKLGW------VDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
           CS    L  G+++H ++I  G       +D ++ + NA++D Y+ CGS+ +A   F+ + 
Sbjct: 348 CSHLAALMHGREIHGYMIVSGLGKDGKDID-DVLLKNAVIDMYAKCGSMRDAHLVFERMS 406

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DV SWN ++  Y  +    +ALE+F RM   + +P   +FV  L+  S  G V  G+ 
Sbjct: 407 NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 466



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 204/429 (47%), Gaps = 23/429 (5%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF-DFIPVDDVISWNSIV 285
           L +GK++HS+++  G+++  + +  +L++ YS C  +  A   F D     +V ++N+I+
Sbjct: 53  LSKGKEIHSYMLINGFLNSPLSI-TSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAII 111

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S +       +  E + +M   R    I     F        +V   K+IHG + K G +
Sbjct: 112 SGFITNGFPEEGFEFYQKM---RNEGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLE 168

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
              V + SAL + Y K  ++E +   FE  P R +   N+++      G  +  +E F  
Sbjct: 169 L-DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M DE +     T++  L   +V    N G  R++H  A+K G++S +AVS SL+D Y +C
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNG--RIIHGFAMKMGYDSGVAVSNSLIDMYGKC 285

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
             IE + ++FE +   ++  + SI++ + + G     L +L+ M+  G+ PD VT   VL
Sbjct: 286 KCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVL 345

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY------SCMIDMLGRAGILDKAEELLQQ 579
             C+H   +  G+ +   M  V G+  D +        + +IDM  + G +  A  + ++
Sbjct: 346 PACSHLAALMHGREIHGYM-IVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFER 404

Query: 580 TPGGGDCMMWSSLLRSCRVH--GNEIIG--RRVANILMELEPVDF-AVYSQVSN--FYSE 632
                D   W+ ++    +H  GNE +    R+  + ++ + V F  V S  S+  F S+
Sbjct: 405 M-SNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQ 463

Query: 633 IGEFEVSMQ 641
              F V M+
Sbjct: 464 GRNFLVQMK 472



 Score = 89.0 bits (219), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 138/277 (49%), Gaps = 13/277 (4%)

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L  ++   N+  GK+IH Y+   GF +  + + S L +MY KCN +  ++++F S P   
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITS-LINMYSKCNQMNFALSIF-SDPTHE 101

Query: 380 LE--CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           +     N++++  + +G  ++  E +  M +EG+  D+ T    +K     A  ++   +
Sbjct: 102 INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIK-----ACLDVLEIK 156

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H    K G E ++ +  +L++ Y + G +E +   FE++P  +VV + +++NGY++ G
Sbjct: 157 KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIG 216

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQH 556
                L+    M    ++P + T   VL+     G +  G+++   +MK   G D+    
Sbjct: 217 QFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKM--GYDSGVAV 274

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            + +IDM G+   ++ A E+ +      D   W+S++
Sbjct: 275 SNSLIDMYGKCKCIEDALEIFEMMR-EKDIFSWNSIV 310



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-------QPNPQLNIYSSNRTIDD 53
           ML   + P + T+TT+ P C+ +  L     +  Y              ++   N  ID 
Sbjct: 329 MLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDM 388

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A  +F+ M  +D+ ++N++I G G   +  +AL ++  M    +K    TF
Sbjct: 389 YAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTF 448

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
             VLS CS+AGF ++G     ++ S       +   + ++D+  R G    A +L   +P
Sbjct: 449 VGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 508

Query: 173 -ERNLATWNLMLRAFCELSR 191
            E N   W  +L A C L +
Sbjct: 509 IEANPVVWRALLAA-CRLHK 527



 Score = 68.2 bits (165), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 91/180 (50%), Gaps = 9/180 (5%)

Query: 417 TLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            L+T + +L  SA   NL   + +H   + +GF ++     SL++ YS+C  +  +  +F
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 476 -EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
            +     NV  F +I++G+  NG   E  +  + M   G+IPDK TF C +  C     +
Sbjct: 96  SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI 155

Query: 535 KEGQ-LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           K+   L+F      +G++ D    S +++   + G+++ A+   ++ P   D ++W++++
Sbjct: 156 KKIHGLLFK-----FGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP-IRDVVLWNAMV 209


>gi|357514793|ref|XP_003627685.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358344437|ref|XP_003636296.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|358345563|ref|XP_003636846.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502231|gb|AES83434.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355502781|gb|AES83984.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355521707|gb|AET02161.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 791

 Score =  281 bits (720), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 182/623 (29%), Positives = 319/623 (51%), Gaps = 18/623 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  +  + K+G    A  +F+ +   D+V++N ++SG   F     AL     M  +G+
Sbjct: 122 SNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTILSG---FEKSVDALNFACFMHLNGV 178

Query: 107 KESASTFSSVLSVCSNAGFYTE-----GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
                T+++ LS C +  ++ +     G+Q+H  V+  GFG  ++IG+ LV +Y R G  
Sbjct: 179 VFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGFGCEVFIGNALVTMYSRWGGL 238

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSR--PDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
             A  +F+E+  R+L +WN ML  + +       E + ++  M  EG+  + +S    + 
Sbjct: 239 DEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREGMLLDHVSLTGAIS 298

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C     L+ GKQ+H    KLG+   ++ V N L+  YS C  L +AK  F  +   +V+
Sbjct: 299 ACGYTKNLEFGKQIHGLAQKLGY-GTHVAVCNVLISTYSKCKVLRDAKAVFQDMSARNVV 357

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +++SI  +     + + LF  M++    P+  +F+  L+  +    V  G  +HG  
Sbjct: 358 SWTTLISIDEE-----NVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEGLMVHGLC 412

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K        +V ++L  MY K   I+ S  +FE    +     N+L++    +G  K+A
Sbjct: 413 LKSCLS-SEQNVSNSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNGLCKEA 471

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
              F   + E I  ++ T  + L A++ +   +L   +  H   IK G  ++  V+ +L+
Sbjct: 472 FLTFLSAIKE-IKPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLIKLGLNTDPFVAGALL 530

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y + G+I  S +VF + P      +T +++ Y+R+G     + + + + + G   D +
Sbjct: 531 DMYGKRGNINESQRVFNETPEKTQFSWTGMISAYARHGDYESVMSLYKEIEREGSNLDSI 590

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TFL VLA C   GMV  G ++F+SM   + I+   +HYS M+DMLGR G LD+AEEL+ Q
Sbjct: 591 TFLSVLAACCRKGMVDVGHIIFDSMVKKHSIEPTPEHYSIMVDMLGRVGRLDEAEELMHQ 650

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            PGG    +  SLL SC++HGN  +  RV + L++++P     Y  ++N Y+E G +E  
Sbjct: 651 IPGGPGLSVLQSLLGSCKLHGNVEMAERVVDSLIQMDPGSSGPYVLMANLYAEKGNWEKV 710

Query: 640 MQIRETALARKLTRDIGHSLIEV 662
            ++R+    R + +++G S ++V
Sbjct: 711 AEVRKGMRGRGVKKEVGFSWVDV 733



 Score =  166 bits (419), Expect = 6e-38,   Method: Compositional matrix adjust.
 Identities = 151/586 (25%), Positives = 279/586 (47%), Gaps = 32/586 (5%)

Query: 31  LLDSYCQPNPQLNIYSS--NRTIDDFVKSGHLNSAKK----LFDEMPARDMVTYNLLISG 84
           +L S   P+  LN++ +   R+    +K  H  S KK    LF+++P  +  + N  +  
Sbjct: 1   MLHSLPPPSKFLNVHKTTLQRSFKTCLKLFH--SLKKHEHNLFEKIPQPNASSINRSMLN 58

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
                 P QAL ++         ++    +  LS  +  G +  G QIH  V++ GF   
Sbjct: 59  FLHKNLPFQALSVFKNQTQFPFLQNIDEVTLALSFKACRGEFILGAQIHGFVVATGFVSR 118

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           + + + L+ +Y + G    AL +F+ L   ++ +WN +L  F    +  + L     M  
Sbjct: 119 VTVSNSLMKMYCKAGRFELALCVFEGLSCPDIVSWNTILSGF---EKSVDALNFACFMHL 175

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDE-----GKQLHSHVIKLGWVDVNIFVANALVDFYSA 259
            GV  + +++   +  C      D+     G QLHS V+K G+    +F+ NALV  YS 
Sbjct: 176 NGVVFDPVTYTTALSFCWDRDYWDDHGFLFGLQLHSLVVKCGF-GCEVFIGNALVTMYSR 234

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF--DALELFFRMQLCRKRPSIRSFV 317
            G L EA + F+ + + D++SWN+++S YA     +  +A+ LF  M          S  
Sbjct: 235 WGGLDEAGRVFNEMTIRDLVSWNAMLSGYAQEGECYGLEAVLLFGNMVREGMLLDHVSLT 294

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             ++    T N+ FGKQIHG   KLG+    V V + L   Y KC V+  + AVF+    
Sbjct: 295 GAISACGYTKNLEFGKQIHGLAQKLGYG-THVAVCNVLISTYSKCKVLRDAKAVFQDMSA 353

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           R++    +L+     S + ++ V +F  M  +G+  ++VT    L A+++      G   
Sbjct: 354 RNVVSWTTLI-----SIDEENVVSLFNAMRVDGVYPNDVTFIGLLHAITIRNMVKEG--L 406

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           ++H   +KS   S   VS SL+  Y++   I+ S ++FE++     + + ++++GY++NG
Sbjct: 407 MVHGLCLKSCLSSEQNVSNSLITMYAKFESIQESKKIFEELNYQGTISWNALISGYAQNG 466

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV--KEGQLVFNSMKSVYGIDADRQ 555
           + +EA       I+  + P++ TF  VL     +  +  K GQ   + +  + G++ D  
Sbjct: 467 LCKEAFLTFLSAIKE-IKPNQYTFGSVLNAIAAAEDISLKHGQRCHSHLIKL-GLNTDPF 524

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
               ++DM G+ G +++++ +  +TP       W+ ++ +   HG+
Sbjct: 525 VAGALLDMYGKRGNINESQRVFNETPEKTQ-FSWTGMISAYARHGD 569


>gi|10092182|gb|AAG12601.1|AC068900_7 hypothetical protein; 7123-4412 [Arabidopsis thaliana]
          Length = 861

 Score =  281 bits (719), Expect = 7e-73,   Method: Compositional matrix adjust.
 Identities = 181/642 (28%), Positives = 324/642 (50%), Gaps = 26/642 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +++  +D + K      + ++F  +P ++ V+++ +I+GC +      AL  + EM 
Sbjct: 172 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 231

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                 S S ++SVL  C+       G Q+H   L   F  +  + +  +D+Y +     
Sbjct: 232 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 291

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD     N  ++N M+  + +     + L +++++ + G+  + +S   + R C+
Sbjct: 292 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 351

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +   L EG Q++   IK   + +++ VANA +D Y  C +L EA + FD +   D +SWN
Sbjct: 352 LVKGLSEGLQIYGLAIKSS-LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWN 410

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++ +      ++ L LF  M   R  P   +F   L  A   G++ +G +IH  + K 
Sbjct: 411 AIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILK-ACTGGSLGYGMEIHSSIVKS 469

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAV----FESAP-------------GRSLECC-- 383
           G    S  V  +L DMY KC +IE +  +    F+ A               R  E C  
Sbjct: 470 GMASNS-SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVS 528

Query: 384 -NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            NS+++  +     +DA  +F  M++ GI  D+ T +T L   +  ASA LG  + +H  
Sbjct: 529 WNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG--KQIHAQ 586

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
            IK   +S++ +  +L+D YS+CG +  S  +FEK    + V + +++ GY+ +G G EA
Sbjct: 587 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 646

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           + + E MI   + P+ VTF+ +L  C H G++ +G   F  MK  YG+D    HYS M+D
Sbjct: 647 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVD 706

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI-IGRRVANILMELEPVDFA 621
           +LG++G + +A EL+++ P   D ++W +LL  C +H N + +       L+ L+P D +
Sbjct: 707 ILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSS 766

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            Y+ +SN Y++ G +E    +R      KL ++ G S +E+ 
Sbjct: 767 AYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELK 808



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 155/603 (25%), Positives = 287/603 (47%), Gaps = 45/603 (7%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           +S+S++ D      P  ++ S N+ I+ + KS  +  A   F+ MP RD+V++N ++SG 
Sbjct: 58  VSASMVFDKM----PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGY 113

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
            +     +++ ++ +M   GI+    TF+ +L VCS     + G+QIH  V+ +G   ++
Sbjct: 114 LQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDV 173

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
              S L+D+Y +    V +L +F  +PE+N  +W+ ++    + +     L+ + +M+  
Sbjct: 174 VAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKV 233

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
               +   +  ++R C+    L  G QLH+H +K  +    I V  A +D Y+ C ++ +
Sbjct: 234 NAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQD 292

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+  FD     +  S+N++++ Y+  +  F AL LF R+          S        + 
Sbjct: 293 AQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACAL 352

Query: 326 TGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
              +  G QI+G   K  L  D   V V +A  DMYGKC  +  +  VF+    R     
Sbjct: 353 VKGLSEGLQIYGLAIKSSLSLD---VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSW 409

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N+++ +   +G   + + +F  M+   I  DE T  + LKA +     +LG    +H   
Sbjct: 410 NAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT---GGSLGYGMEIHSSI 466

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQV----------------FEKIPSPNV---- 483
           +KSG  SN +V CSL+D YS+CG IE + ++                 EK+ +  +    
Sbjct: 467 VKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMC 526

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH---SGMVKE--GQ 538
           V + SI++GY       +A  +   M++ G+ PDK T+  VL  C +   +G+ K+   Q
Sbjct: 527 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 586

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           ++   ++S      D    S ++DM  + G L  +  + +++    D + W++++     
Sbjct: 587 VIKKELQS------DVYICSTLVDMYSKCGDLHDSRLMFEKSL-RRDFVTWNAMICGYAH 639

Query: 599 HGN 601
           HG 
Sbjct: 640 HGK 642



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/489 (23%), Positives = 236/489 (48%), Gaps = 39/489 (7%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+  G    G Q H  ++  GF    ++ + L+ +Y      V A  +FD++P R++ +W
Sbjct: 16  CAKQGALELGKQAHAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSW 75

Query: 180 NLMLRAFC---ELSRPDEVLRM----------------------------YNKMKAEGVE 208
           N M+  +    ++ + +    M                            +  M  EG+E
Sbjct: 76  NKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIE 135

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            +G +F  +++ CS       G Q+H  V+++G  D ++  A+AL+D Y+     +E+ +
Sbjct: 136 FDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVG-CDTDVVAASALLDMYAKGKRFVESLR 194

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  IP  + +SW++I++     +L+  AL+ F  MQ      S   +   L   +    
Sbjct: 195 VFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSE 254

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           +  G Q+H +  K  F    + V++A  DMY KC+ ++ +  +F+++   + +  N+++T
Sbjct: 255 LRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMIT 313

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
                 +   A+ +F  ++  G+G DE++LS   +A ++    + G    ++  AIKS  
Sbjct: 314 GYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACALVKGLSEG--LQIYGLAIKSSL 371

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             ++ V+ + +D Y +C  +  + +VF+++   + V + +I+  + +NG G E L +   
Sbjct: 372 SLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVS 431

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQHYSCMIDMLGRA 567
           M++  + PD+ TF  +L  C   G +  G  + +S+ KS  G+ ++      +IDM  + 
Sbjct: 432 MLRSRIEPDEFTFGSILKACT-GGSLGYGMEIHSSIVKS--GMASNSSVGCSLIDMYSKC 488

Query: 568 GILDKAEEL 576
           G++++AE++
Sbjct: 489 GMIEEAEKI 497



 Score = 72.8 bits (177), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 10/199 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ---PNPQLNIYSSNRTIDDFVKS 57
           M+   + P   T  T+  TC ++   S+ L    + Q      Q ++Y  +  +D + K 
Sbjct: 552 MMEMGITPDKFTYATVLDTCANLA--SAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKC 609

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L+ ++ +F++   RD VT+N +I G       ++A+ L++ M+   IK +  TF S+L
Sbjct: 610 GDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISIL 669

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ER 174
             C++ G   +G++ +  ++   +GL+  +   S +VD+  + G   RAL+L  E+P E 
Sbjct: 670 RACAHMGLIDKGLE-YFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEA 728

Query: 175 NLATWNLMLRAFCELSRPD 193
           +   W  +L   C + R +
Sbjct: 729 DDVIWRTLL-GVCTIHRNN 746


>gi|413932453|gb|AFW67004.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 913

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 193/634 (30%), Positives = 324/634 (51%), Gaps = 19/634 (2%)

Query: 34  SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           S+  P P  ++    + +D  +KSG L  A  LFD MP +++V +   ISGC +   P+ 
Sbjct: 62  SHAAPPP--DVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGRPEA 119

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           A  ++ +M+  G+  +    ++ L+ C+ AG    G Q+H   +  GF  + +IGS L++
Sbjct: 120 AATMFADMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSCLIE 179

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFC---ELSRPDEVLRMYNKMKAEGVEPN 210
           LY R G    A ++F  +   ++  +  ++ A C   EL+R  +VL    +M  +G++PN
Sbjct: 180 LYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVL---CQMTRQGLQPN 236

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +   M+  C  G+    G+Q+H +++K+     +++ + AL+DFYS  G    AK  F
Sbjct: 237 EHTMTSMLAECPRGI----GEQIHGYMLKV-MGSQSVYASTALIDFYSRYGDFGTAKTVF 291

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           + +   +V+SW S++ +      + DAL +F  M     +P+  +F   L   S  G+V 
Sbjct: 292 ENLESKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFAFSIAL---SACGSVC 348

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G+QIH    K       + V +AL  MYG+   +    AV        L    + +++ 
Sbjct: 349 LGRQIHCSAIKRDL-MTDIRVSNALLSMYGRSGFVSELEAVLGKIENPDLVSWTAAISAN 407

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
             +G  + AV +   M  EG   ++   S+ L   S +  A L   R LHC A+K G + 
Sbjct: 408 FQNGFSEKAVALLLQMHSEGFTPNDYAFSSGLS--SCADLALLHQGRQLHCLALKLGCDF 465

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
            +    +L++ YS+CG I  +   F+ + + +V+ + S+++G +++G    AL+    M 
Sbjct: 466 KVCTGNALINMYSKCGRIGSARLAFDVMDTHDVMSWNSLIHGLAQHGDANLALETFSEMC 525

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
                PD  TFL VL GCNH+G+VKEG+  F  M   YG+     HY+CMIDMLGR G  
Sbjct: 526 SSDWRPDDSTFLSVLVGCNHAGLVKEGETFFRQMTDRYGLTPTPSHYACMIDMLGRNGRF 585

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +A  +++  P   D ++W +LL SC++H N  IG+  A+ LMEL   D A Y  +SN Y
Sbjct: 586 AEALRMIENMPFEPDVLIWKTLLASCKLHRNLDIGKLAADKLMELSERDSASYVLMSNLY 645

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +   E+  + ++R       + +D G S IEV +
Sbjct: 646 AMHEEWRDAERVRRRMDEIGVKKDAGWSWIEVKN 679



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 143/327 (43%), Gaps = 55/327 (16%)

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           ++V V  +AP   +      +  L+ SG + DA+++F  M  + +      +S   +   
Sbjct: 57  AAVNVSHAAPPPDVVLDCKRLDGLMKSGRLGDALDLFDRMPRKNVVAWTTAISGCTRNGR 116

Query: 427 VSASANLGSCRL-----------------------------LHCCAIKSGFESNIAVSCS 457
             A+A + +  L                             +H  A+++GF ++  +   
Sbjct: 117 PEAAATMFADMLESGVAPNDFACNAALAACAAAGALGLGEQVHSLAVRAGFAADAWIGSC 176

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L++ YSRCG +  + +VF ++ +P+VV +TS+++   RNG    A+D+L  M ++GL P+
Sbjct: 177 LIELYSRCGSLRAAEEVFRRMEAPDVVGYTSLVSALCRNGELARAVDVLCQMTRQGLQPN 236

Query: 518 KVTFLCVLAGCN-------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
           + T   +LA C        H  M+K    V  S +SVY   A       +ID   R G  
Sbjct: 237 EHTMTSMLAECPRGIGEQIHGYMLK----VMGS-QSVYASTA-------LIDFYSRYGDF 284

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME--LEPVDFAVYSQVSN 628
             A+ + +      + + W S+++ C   G      RV + ++   ++P +FA     S 
Sbjct: 285 GTAKTVFENLE-SKNVVSWCSMMQLCIRDGRLDDALRVFSEMISEGVQPNEFA----FSI 339

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDI 655
             S  G   +  QI  +A+ R L  DI
Sbjct: 340 ALSACGSVCLGRQIHCSAIKRDLMTDI 366


>gi|116310835|emb|CAH67622.1| OSIGBa0140J09.3 [Oryza sativa Indica Group]
          Length = 1027

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 172/625 (27%), Positives = 330/625 (52%), Gaps = 7/625 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  +  I+ + K G  + AK +FD    +++V +N +++G  +   P++A+ ++  M+
Sbjct: 359 NVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMM 418

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            + ++    TF S+L  C+    +  G Q+HC  +     ++L++ +  +D+Y + G   
Sbjct: 419 RYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKNCMDISLFVANATLDMYSKYGAIG 478

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  +P ++  +WN +     +    +E + M  +M+  G+ P+ +SF   +  CS
Sbjct: 479 DAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACS 538

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                + GKQ+H   IK G +  N  V ++L+D YS  G +  ++K F  +    ++  N
Sbjct: 539 NIRATETGKQIHCLAIKYG-ICSNHAVGSSLIDLYSKHGDVESSRKIFAQVDASSIVPIN 597

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ +   +   +A++LF ++     +PS  +F   L+  S + N   GKQ+H Y  K 
Sbjct: 598 ALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGCSGSLNSAIGKQVHCYTLKS 657

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVE 401
           G  +    +  +L  +Y K  ++E +  +    P  ++L    ++++    +G    ++ 
Sbjct: 658 GVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLV 717

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALS-VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            F  M    +  DE T ++ LKA S V+A A+    + +H    KSGF S    + +L+D
Sbjct: 718 SFWRMRHCNVRSDEATFASVLKACSDVTAFAD---GKEIHGLITKSGFGSYETATSALID 774

Query: 461 AYSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            YS+CG +  S + F+++ +  +++ + S++ G+++NG   EAL + + M +  + PD+V
Sbjct: 775 MYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADEALLLFQKMEELQIKPDEV 834

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TFL VL  C HSG++ EG+  F  M+ VYG+     HY+C ID+LGR G L +A+E + Q
Sbjct: 835 TFLGVLIACTHSGLISEGRHFFGPMRKVYGLTPRLDHYACFIDLLGRGGHLQEAQEAIDQ 894

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D ++W++ L +CR+H +E  G+  A  L+ELEP   + Y  +S+ ++  G +  +
Sbjct: 895 LPFRPDGVVWATYLAACRMHKDEERGKIAARKLVELEPQYSSTYVLLSSLHAATGNWAEA 954

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
              RE+   + + +  G S I V +
Sbjct: 955 KVTRESMREKGVAKFPGCSWITVGN 979



 Score =  237 bits (604), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 161/547 (29%), Positives = 274/547 (50%), Gaps = 11/547 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I     SG L+ A  L  +MP    V +N +ISG  +       L LY +M S G+  + 
Sbjct: 266 ISTLASSGRLDHATALLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTR 325

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           STF+S+LS  +N   + EG Q+H   +  G   N+++GS L++LY + G    A ++FD 
Sbjct: 326 STFASMLSAAANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDL 385

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
             E+N+  WN ML  F +   P+E +RM+  M    ++ +  +F  ++  C+       G
Sbjct: 386 SCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLG 445

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+H   IK   +D+++FVANA +D YS  G++ +AK  F  IP  D ISWN++    A 
Sbjct: 446 KQVHCVTIK-NCMDISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQ 504

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF--DHGS 348
                +A+ +  RM+L    P   SF   +N  S       GKQIH    K G   +H  
Sbjct: 505 NLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHA- 563

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             V S+L D+Y K   +ESS  +F      S+   N+L+   + + N  +A+++F  ++ 
Sbjct: 564 --VGSSLIDLYSKHGDVESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLK 621

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGH 467
           +G+    VT S+ L   S S ++ +G  + +HC  +KSG    +  +  SL   Y +   
Sbjct: 622 DGLKPSSVTFSSILSGCSGSLNSAIG--KQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKM 679

Query: 468 IELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +E ++++  ++P   N+  +T+I++GY++NG G  +L     M    +  D+ TF  VL 
Sbjct: 680 LEDANKLLTEMPDHKNLFEWTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLK 739

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+      +G+ + + + +  G  +     S +IDM  + G +  + E  ++     D 
Sbjct: 740 ACSDVTAFADGKEI-HGLITKSGFGSYETATSALIDMYSKCGDVISSFEAFKELKNKQDI 798

Query: 587 MMWSSLL 593
           M W+S++
Sbjct: 799 MPWNSMI 805



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 121/458 (26%), Positives = 219/458 (47%), Gaps = 17/458 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++++ +N T+D + K G +  AK LF  +P +D +++N L  G  +    ++A+ +   M
Sbjct: 459 ISLFVANATLDMYSKYGAIGDAKALFSLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRM 518

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             HGI     +FS+ ++ CSN      G QIHC  +  G   N  +GS L+DLY + G  
Sbjct: 519 RLHGITPDDVSFSTAINACSNIRATETGKQIHCLAIKYGICSNHAVGSSLIDLYSKHGDV 578

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +  +F ++   ++   N ++  F + +  DE ++++ ++  +G++P+ ++F  ++ GC
Sbjct: 579 ESSRKIFAQVDASSIVPINALIAGFVQNNNEDEAIQLFQQVLKDGLKPSSVTFSSILSGC 638

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVIS 280
           S  +    GKQ+H + +K G +  +  +  +L   Y     L +A K    +P   ++  
Sbjct: 639 SGSLNSAIGKQVHCYTLKSGVLYDDTLLGVSLAGIYLKSKMLEDANKLLTEMPDHKNLFE 698

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +I+S YA       +L  F+RM+ C  R    +F   L   S       GK+IHG +T
Sbjct: 699 WTAIISGYAQNGYGDHSLVSFWRMRHCNVRSDEATFASVLKACSDVTAFADGKEIHGLIT 758

Query: 341 KLGFDHGSVHV-QSALTDMYGKCNVIESSVAVFESAPGRS-LECCNSLMTSLLHSGNIKD 398
           K GF  GS     SAL DMY KC  + SS   F+    +  +   NS++     +G   +
Sbjct: 759 KSGF--GSYETATSALIDMYSKCGDVISSFEAFKELKNKQDIMPWNSMIVGFAKNGYADE 816

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN-----LGSCRLLHCCAIKSGFESNIA 453
           A+ +F  M +  I  DEVT    L A + S   +      G  R ++      G    + 
Sbjct: 817 ALLLFQKMEELQIKPDEVTFLGVLIACTHSGLISEGRHFFGPMRKVY------GLTPRLD 870

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
                +D   R GH++ + +  +++P  P+ V + + +
Sbjct: 871 HYACFIDLLGRGGHLQEAQEAIDQLPFRPDGVVWATYL 908



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 220/464 (47%), Gaps = 40/464 (8%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           VLS CS  G    G Q+HC V+  GF  +++  + LVD+Y + G    A  +FD +   +
Sbjct: 164 VLSACSRVGVLAYGRQVHCDVVKSGFSSSVFCEAALVDMYAKCGDVPNARRVFDGIACPD 223

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
              W+ M+  +  +    E L ++++M   G  P+ ++   +     I  L   G+  H 
Sbjct: 224 TICWSSMIACYHRVGCYQEALALFSRMDKMGSAPDQVTLVTI-----ISTLASSGRLDH- 277

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
                         A AL+            KK    +P    ++WN+++S +A   L F
Sbjct: 278 --------------ATALL------------KK----MPTPSTVAWNAVISGHAQSGLEF 307

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           + L L+  M+     P+  +F   L+ A+       G+Q+H      G D  +V V S+L
Sbjct: 308 NVLGLYKDMRSWGLWPTRSTFASMLSAAANMKAFVEGQQMHAAAVMHGLD-ANVFVGSSL 366

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            ++Y KC     +  VF+ +  +++   N+++T  + +   ++A+ MF +M+   +  DE
Sbjct: 367 INLYAKCGCPSDAKNVFDLSCEKNIVMWNAMLTGFVQNELPEEAIRMFQYMMRYTLQTDE 426

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T  + L A +  +S  LG  + +HC  IK+  + ++ V+ + +D YS+ G I  +  +F
Sbjct: 427 FTFVSILGACTYLSSFYLG--KQVHCVTIKNCMDISLFVANATLDMYSKYGAIGDAKALF 484

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
             IP  + + + ++  G ++N    EA+ ML+ M   G+ PD V+F   +  C++    +
Sbjct: 485 SLIPYKDSISWNALTVGLAQNLEEEEAVCMLKRMRLHGITPDDVSFSTAINACSNIRATE 544

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            G+ + + +   YGI ++    S +ID+  + G ++ + ++  Q
Sbjct: 545 TGKQI-HCLAIKYGICSNHAVGSSLIDLYSKHGDVESSRKIFAQ 587



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 130/558 (23%), Positives = 235/558 (42%), Gaps = 83/558 (14%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H R+L  G  L   +G  LV+LY + G    A        ER     + +L        
Sbjct: 78  LHGRILRGGSPLLGRLGDSLVELYCKSGRVGYAWSALGYAGERASGAASSLLSCHARSGS 137

Query: 192 PDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           P +VL  +  ++   G  P+      ++  CS   +L  G+Q+H  V+K G+   ++F  
Sbjct: 138 PGDVLGAFRYIRCTAGGRPDQFGLAVVLSACSRVGVLAYGRQVHCDVVKSGFSS-SVFCE 196

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALVD Y+ CG +  A++ FD I   D I W+S+++ Y       +AL LF RM      
Sbjct: 197 AALVDMYAKCGDVPNARRVFDGIACPDTICWSSMIACYHRVGCYQEALALFSRMDKMGSA 256

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + V  ++  + +G +               DH +                     A
Sbjct: 257 PDQVTLVTIISTLASSGRL---------------DHAT---------------------A 280

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           + +  P  S    N++++    SG   + + ++  M   G+     T ++ L     SA+
Sbjct: 281 LLKKMPTPSTVAWNAVISGHAQSGLEFNVLGLYKDMRSWGLWPTRSTFASML-----SAA 335

Query: 431 ANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           AN+ +    + +H  A+  G ++N+ V  SL++ Y++CG    +  VF+     N+V + 
Sbjct: 336 ANMKAFVEGQQMHAAAVMHGLDANVFVGSSLINLYAKCGCPSDAKNVFDLSCEKNIVMWN 395

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKS 546
           +++ G+ +N +  EA+ M + M++  L  D+ TF+ +L  C +      G+ V   ++K+
Sbjct: 396 AMLTGFVQNELPEEAIRMFQYMMRYTLQTDEFTFVSILGACTYLSSFYLGKQVHCVTIKN 455

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL-------------- 592
              +D      +  +DM  + G +  A+ L    P   D + W++L              
Sbjct: 456 C--MDISLFVANATLDMYSKYGAIGDAKALFSLIP-YKDSISWNALTVGLAQNLEEEEAV 512

Query: 593 --LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
             L+  R+HG              + P D + +S   N  S I   E   QI   A+   
Sbjct: 513 CMLKRMRLHG--------------ITPDDVS-FSTAINACSNIRATETGKQIHCLAIKYG 557

Query: 651 LTRD--IGHSLIEVNSCH 666
           +  +  +G SLI++ S H
Sbjct: 558 ICSNHAVGSSLIDLYSKH 575


>gi|218526158|sp|Q9M1V3.2|PP296_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g63370
          Length = 960

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 180/620 (29%), Positives = 322/620 (51%), Gaps = 11/620 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           N  +  + K+  L++A++LFD    + D V +N ++S         + L L+ EM   G 
Sbjct: 221 NALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGP 280

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
             ++ T  S L+ C    +   G +IH  VL S      LY+ + L+ +Y R G   +A 
Sbjct: 281 APNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 340

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +  ++   ++ TWN +++ + +     E L  ++ M A G + + +S   ++       
Sbjct: 341 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L  G +LH++VIK GW D N+ V N L+D YS C       ++F  +   D+ISW +++
Sbjct: 401 NLLAGMELHAYVIKHGW-DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVI 459

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLG 343
           + YA  D   +ALELF    + +KR  I   +    L  +S   ++   K+IH ++ + G
Sbjct: 460 AGYAQNDCHVEALELF--RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 517

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                  +Q+ L D+YGKC  +  +  VFES  G+ +    S+++S   +GN  +AVE+F
Sbjct: 518 L--LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELF 575

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             MV+ G+  D V L   L A +  ++ N G  R +HC  ++ GF    +++ +++D Y+
Sbjct: 576 RRMVETGLSADSVALLCILSAAASLSALNKG--REIHCYLLRKGFCLEGSIAVAVVDMYA 633

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
            CG ++ +  VF++I    ++ +TS++N Y  +G G+ A+++ + M    + PD ++FL 
Sbjct: 634 CCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLA 693

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L  C+H+G++ EG+     M+  Y ++   +HY C++DMLGRA  + +A E ++     
Sbjct: 694 LLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTE 753

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W +LL +CR H  + IG   A  L+ELEP +      VSN ++E G +    ++R
Sbjct: 754 PTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVR 813

Query: 644 ETALARKLTRDIGHSLIEVN 663
               A  + +  G S IE++
Sbjct: 814 AKMKASGMEKHPGCSWIEMD 833



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 257/541 (47%), Gaps = 23/541 (4%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G L+ A+K+FDEMP R    +N +I        P  AL LY  M   G+    S+F
Sbjct: 126 YGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSF 185

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            ++L  C+       G ++H  ++ LG+    +I + LV +Y +      A  LFD   E
Sbjct: 186 PALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 245

Query: 174 RNLAT-WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +  A  WN +L ++    +  E L ++ +M   G  PN  +    +  C        GK+
Sbjct: 246 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKE 305

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H+ V+K       ++V NAL+  Y+ CG + +A++    +   DV++WNS++  Y    
Sbjct: 306 IHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNL 365

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           +  +ALE F  M     +    S    +  + R  N+  G ++H YV K G+D  ++ V 
Sbjct: 366 MYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVG 424

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           + L DMY KCN+       F     + L    +++     +    +A+E+F  +  + + 
Sbjct: 425 NTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME 484

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           +DE+ L + L+A SV  S  +   + +HC  ++ G    + +   L+D Y +C ++  + 
Sbjct: 485 IDEMILGSILRASSVLKSMLI--VKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGYAT 541

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN--- 529
           +VFE I   +VV +TS+++  + NG   EA+++   M++ GL  D V  LC+L+      
Sbjct: 542 RVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLS 601

Query: 530 --------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE--LLQQ 579
                   H  ++++G  +  S+ +V  +D     Y+C  D+     + D+ E   LLQ 
Sbjct: 602 ALNKGREIHCYLLRKGFCLEGSI-AVAVVDM----YACCGDLQSAKAVFDRIERKGLLQY 656

Query: 580 T 580
           T
Sbjct: 657 T 657



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 236/502 (47%), Gaps = 26/502 (5%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL-YIGSPLVDLYMRMGPSVRALDLFDE 170
            F+ VL +C      ++G Q+H R+        L ++   LV +Y + G    A  +FDE
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDE 141

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS-FCYMVRGCSIGMLLDE 229
           +P+R    WN M+ A+     P   L +Y  M+ EGV P GLS F  +++ C+    +  
Sbjct: 142 MPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGV-PLGLSSFPALLKACAKLRDIRS 200

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FIPVDDVISWNSIVSIY 288
           G +LHS ++KLG+     F+ NALV  Y+    L  A++ FD F    D + WNSI+S Y
Sbjct: 201 GSELHSLLVKLGYHSTG-FIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           +      + LELF  M +    P+  + V  L           GK+IH  V K       
Sbjct: 260 STSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSE 319

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           ++V +AL  MY +C  +  +  +        +   NSL+   + +   K+A+E F  M+ 
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 379

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
            G   DEV++++ + A      +NL +   LH   IK G++SN+ V  +L+D YS+C   
Sbjct: 380 AGHKSDEVSMTSIIAA--SGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLT 437

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
               + F ++   +++ +T+++ GY++N    EAL++   + ++ +  D++         
Sbjct: 438 CYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMIL------- 490

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDA--------DRQHYSCMIDMLGRAGILDKAEELLQQT 580
              G +     V  SM  V  I          D    + ++D+ G+   +  A  + +  
Sbjct: 491 ---GSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESI 547

Query: 581 PGGGDCMMWSSLLRSCRVHGNE 602
             G D + W+S++ S  ++GNE
Sbjct: 548 K-GKDVVSWTSMISSSALNGNE 568



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 110/438 (25%), Positives = 209/438 (47%), Gaps = 17/438 (3%)

Query: 2   LSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN------------IYSSNR 49
           L T  L R   +T  AP   +IV   ++    SY +   +++            +Y  N 
Sbjct: 266 LETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNA 325

Query: 50  TIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            I  + + G +  A+++  +M   D+VT+N LI G  +    K+AL  + +M++ G K  
Sbjct: 326 LIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSD 385

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
             + +S+++          G+++H  V+  G+  NL +G+ L+D+Y +   +      F 
Sbjct: 386 EVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCYMGRAFL 445

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            + +++L +W  ++  + +     E L ++  +  + +E + +    ++R  S+   +  
Sbjct: 446 RMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSVLKSMLI 505

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            K++H H+++ G +D    + N LVD Y  C ++  A + F+ I   DV+SW S++S  A
Sbjct: 506 VKEIHCHILRKGLLDT--VIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSA 563

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-DHGS 348
                 +A+ELF RM          + +  L+ A+    +  G++IH Y+ + GF   GS
Sbjct: 564 LNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGS 623

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           + V  A+ DMY  C  ++S+ AVF+    + L    S++ +    G  K AVE+F  M  
Sbjct: 624 IAV--AVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRH 681

Query: 409 EGIGLDEVTLSTTLKALS 426
           E +  D ++    L A S
Sbjct: 682 ENVSPDHISFLALLYACS 699



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 35/358 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY---- 98
           N+   N  ID + K        + F  M  +D++++  +I+G  +     +AL L+    
Sbjct: 420 NLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVA 479

Query: 99  ------DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
                 DEM+   I  ++S   S+L V           +IHC +L  G  L+  I + LV
Sbjct: 480 KKRMEIDEMILGSILRASSVLKSMLIV----------KEIHCHILRKGL-LDTVIQNELV 528

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D+Y +      A  +F+ +  +++ +W  M+ +        E + ++ +M   G+  + +
Sbjct: 529 DVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSV 588

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++   +    L++G+++H ++++ G+  +   +A A+VD Y+ CG L  AK  FD 
Sbjct: 589 ALLCILSAAASLSALNKGREIHCYLLRKGFC-LEGSIAVAVVDMYACCGDLQSAKAVFDR 647

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           I    ++ + S+++ Y  +     A+ELF +M+     P   SF+  L   S  G +  G
Sbjct: 648 IERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEG 707

Query: 333 KQI-----HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS---VAVFESAPGRSLEC 382
           +       H Y  +   +H        L DM G+ N +  +   V + ++ P   + C
Sbjct: 708 RGFLKIMEHEYELEPWPEH-----YVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWC 760



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 11/238 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+    N  +D + K  ++  A ++F+ +  +D+V++  +IS      +  +A+ L+  M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  G+   +     +LS  ++     +G +IHC +L  GF L   I   +VD+Y   G  
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD +  + L  +  M+ A+         + +++KM+ E V P+ +SF  ++  C
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 222 SIGMLLDEGK---QLHSHVIKL-GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           S   LLDEG+   ++  H  +L  W +  +     LVD       ++EA   F+F+ +
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYV----CLVDMLGRANCVVEA---FEFVKM 749


>gi|225463424|ref|XP_002272240.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Vitis vinifera]
          Length = 629

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 178/550 (32%), Positives = 298/550 (54%), Gaps = 19/550 (3%)

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF-DELPERNLATWNLMLRA 185
           ++G +IH  +L  GF  +    + L+++Y +      AL +F D   E N+  +N ++  
Sbjct: 54  SKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIFSDPTHEINVFAFNAIISG 113

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD--EGKQLHSHVIKLGWV 243
           F     P+E    Y KM+ EGV P+  +F      C+I   LD  E K++H  + K G +
Sbjct: 114 FITNGFPEEGFEFYQKMRNEGVIPDKFTF-----PCAIKACLDVLEIKKIHGLLFKFG-L 167

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           ++++F+ +ALV+ Y   G +  A+ +F+ +P+ DV+ WN++V+ YA        LE F R
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M      PS  +    L+  +  G++  G+ IHG+  K+G+D G V V ++L DMYGKC 
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSG-VAVSNSLIDMYGKCK 286

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            IE ++ +FE    + +   NS+++     G+    + +   M+  GI  D VT++T L 
Sbjct: 287 CIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLP 346

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESN------IAVSCSLMDAYSRCGHIELSHQVFEK 477
           A S  A+   G  R +H   I SG   +      + +  +++D Y++CG +  +H VFE+
Sbjct: 347 ACSHLAALMHG--REIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFER 404

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           + + +V  +  ++ GY  +G G EAL+M   M +  L PD+VTF+ VL+ C+H+G V +G
Sbjct: 405 MSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQG 464

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           +     MKS Y +    +HY+C+IDMLGRAG LD+A EL    P   + ++W +LL +CR
Sbjct: 465 RNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEANPVVWRALLAACR 524

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           +H + ++    A  + ELEP     Y  +SN Y  +G +E  +++R T   + + +  G 
Sbjct: 525 LHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVLEVRHTMRQQNVRKTPGC 584

Query: 658 SLIEV-NSCH 666
           S IE+ N  H
Sbjct: 585 SWIELKNGVH 594



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 77/300 (25%), Positives = 157/300 (52%), Gaps = 7/300 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++  +  ++ ++K G +  A+  F+E+P RD+V +N +++G  +    +  L  +  
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +  S  T + VLSV +  G    G  IH   + +G+   + + + L+D+Y +   
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL++F+ + E+++ +WN ++    +    D  LR+ ++M   G++P+ ++   ++  
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPA 347

Query: 221 CSIGMLLDEGKQLHSHVIKLGW------VDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
           CS    L  G+++H ++I  G       +D ++ + NA++D Y+ CGS+ +A   F+ + 
Sbjct: 348 CSHLAALMHGREIHGYMIVSGLGKDGKDID-DVLLKNAVIDMYAKCGSMRDAHLVFERMS 406

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DV SWN ++  Y  +    +ALE+F RM   + +P   +FV  L+  S  G V  G+ 
Sbjct: 407 NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 466



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 112/429 (26%), Positives = 204/429 (47%), Gaps = 23/429 (5%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF-DFIPVDDVISWNSIV 285
           L +GK++HS+++  G+++  + +  +L++ YS C  +  A   F D     +V ++N+I+
Sbjct: 53  LSKGKEIHSYMLINGFLNSPLSIT-SLINMYSKCNQMNFALSIFSDPTHEINVFAFNAII 111

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           S +       +  E + +M   R    I     F        +V   K+IHG + K G +
Sbjct: 112 SGFITNGFPEEGFEFYQKM---RNEGVIPDKFTFPCAIKACLDVLEIKKIHGLLFKFGLE 168

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
              V + SAL + Y K  ++E +   FE  P R +   N+++      G  +  +E F  
Sbjct: 169 L-DVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M DE +     T++  L   +V    N G  R++H  A+K G++S +AVS SL+D Y +C
Sbjct: 228 MNDESVVPSRFTVTGVLSVFAVMGDLNNG--RIIHGFAMKMGYDSGVAVSNSLIDMYGKC 285

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
             IE + ++FE +   ++  + SI++ + + G     L +L+ M+  G+ PD VT   VL
Sbjct: 286 KCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVL 345

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY------SCMIDMLGRAGILDKAEELLQQ 579
             C+H   +  G+ +   M  V G+  D +        + +IDM  + G +  A  + ++
Sbjct: 346 PACSHLAALMHGREIHGYM-IVSGLGKDGKDIDDVLLKNAVIDMYAKCGSMRDAHLVFER 404

Query: 580 TPGGGDCMMWSSLLRSCRVH--GNEIIG--RRVANILMELEPVDF-AVYSQVSN--FYSE 632
                D   W+ ++    +H  GNE +    R+  + ++ + V F  V S  S+  F S+
Sbjct: 405 M-SNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQ 463

Query: 633 IGEFEVSMQ 641
              F V M+
Sbjct: 464 GRNFLVQMK 472



 Score = 88.2 bits (217), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 138/277 (49%), Gaps = 13/277 (4%)

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L  ++   N+  GK+IH Y+   GF +  + + S L +MY KCN +  ++++F S P   
Sbjct: 44  LQASAHHKNLSKGKEIHSYMLINGFLNSPLSITS-LINMYSKCNQMNFALSIF-SDPTHE 101

Query: 380 LE--CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           +     N++++  + +G  ++  E +  M +EG+  D+ T    +K     A  ++   +
Sbjct: 102 INVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIK-----ACLDVLEIK 156

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H    K G E ++ +  +L++ Y + G +E +   FE++P  +VV + +++NGY++ G
Sbjct: 157 KIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIG 216

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQH 556
                L+    M    ++P + T   VL+     G +  G+++   +MK   G D+    
Sbjct: 217 QFEMVLETFRRMNDESVVPSRFTVTGVLSVFAVMGDLNNGRIIHGFAMK--MGYDSGVAV 274

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            + +IDM G+   ++ A E+ +      D   W+S++
Sbjct: 275 SNSLIDMYGKCKCIEDALEIFEMMR-EKDIFSWNSIV 310



 Score = 71.2 bits (173), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-------QPNPQLNIYSSNRTIDD 53
           ML   + P + T+TT+ P C+ +  L     +  Y              ++   N  ID 
Sbjct: 329 MLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDM 388

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A  +F+ M  +D+ ++N++I G G   +  +AL ++  M    +K    TF
Sbjct: 389 YAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTF 448

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
             VLS CS+AGF ++G     ++ S       +   + ++D+  R G    A +L   +P
Sbjct: 449 VGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 508

Query: 173 -ERNLATWNLMLRAFCELSR 191
            E N   W  +L A C L +
Sbjct: 509 IEANPVVWRALLAA-CRLHK 527



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 45/180 (25%), Positives = 91/180 (50%), Gaps = 9/180 (5%)

Query: 417 TLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            L+T + +L  SA   NL   + +H   + +GF ++     SL++ YS+C  +  +  +F
Sbjct: 36  NLTTCIASLQASAHHKNLSKGKEIHSYMLINGFLNSPLSITSLINMYSKCNQMNFALSIF 95

Query: 476 -EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
            +     NV  F +I++G+  NG   E  +  + M   G+IPDK TF C +  C     +
Sbjct: 96  SDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVIPDKFTFPCAIKACLDVLEI 155

Query: 535 KEGQ-LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           K+   L+F      +G++ D    S +++   + G+++ A+   ++ P   D ++W++++
Sbjct: 156 KKIHGLLFK-----FGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP-IRDVVLWNAMV 209


>gi|356532922|ref|XP_003535018.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g03540-like [Glycine max]
          Length = 611

 Score =  281 bits (719), Expect = 8e-73,   Method: Compositional matrix adjust.
 Identities = 171/612 (27%), Positives = 323/612 (52%), Gaps = 16/612 (2%)

Query: 55  VKSGHLNSAKKLFDE--MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST 112
           +KS HL S   +F    +P+R   T + ++  C     PK  + L  +  +  +K     
Sbjct: 1   MKSLHLKSRFSIFTSTVVPSR---TESQILHHCKLGALPKALILLKAQAQAQALK--PVV 55

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV-RALDLFDEL 171
           ++S+L  C  A  +  G  +H  VL  GF  + ++ + L+ LY ++ P   +A  LFD L
Sbjct: 56  YASLLQACRKAHSFPLGTHLHAHVLKSGFLADRFVANSLLSLYSKLSPHFSQARALFDAL 115

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           P +++  W  ++    + ++P   + ++ +M  + +EPN  +   +++ CS    L  GK
Sbjct: 116 PFKDVIAWTSIISGHVQKAQPKTAVHLFLQMLGQAIEPNAFTLSSILKACSQLENLHLGK 175

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            LH+ V   G+   N  VA AL+D Y     + +A+K FD +P  D + W +++S  A  
Sbjct: 176 TLHAVVFIRGFHSNNNVVACALIDMYGRSRVVDDARKVFDELPEPDYVCWTAVISTLARN 235

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           D   +A+ +FF M        +  F     LN     G +  G+++HG V  LG   G+V
Sbjct: 236 DRFREAVRVFFAMHDGGLGLEVDGFTFGTLLNACGNLGWLRMGREVHGKVVTLGMK-GNV 294

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V+S+L DMYGKC  +  +  VF+    ++     +++    H+G   +   + G + + 
Sbjct: 295 FVESSLLDMYGKCGEVGCARVVFDGLEEKNEVALTAMLGVYCHNG---ECGSVLGLVREW 351

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
              +D  +  T ++A S  A+   G+   +HC  ++ G   ++ V  +L+D Y++CG ++
Sbjct: 352 RSMVDVYSFGTIIRACSGLAAVRQGN--EVHCQYVRRGGWRDVVVESALVDLYAKCGSVD 409

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            ++++F ++ + N++ + +++ G+++NG G+E +++ E M++ G+ PD ++F+ VL  C+
Sbjct: 410 FAYRLFSRMEARNLITWNAMIGGFAQNGRGQEGVELFEEMVKEGVRPDWISFVNVLFACS 469

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+G+V +G+  F+ M+  YGI     HY+CMID+LGRA ++++AE LL+      D   W
Sbjct: 470 HNGLVDQGRRYFDLMRREYGIRPGVVHYTCMIDILGRAELIEEAESLLESADCRYDHSRW 529

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
           + LL +C    + +   R+A  +++LEP     Y  + N Y  +G++  +++IR+    R
Sbjct: 530 AVLLGACTKCSDYVTAERIAKKMIQLEPDFHLSYVLLGNIYRAVGKWNEALEIRKLMEER 589

Query: 650 KLTRDIGHSLIE 661
            + +  G S IE
Sbjct: 590 GVKKVPGKSWIE 601



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 105/384 (27%), Positives = 191/384 (49%), Gaps = 12/384 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSI--VPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSG 58
           ML   + P   T++++   C+ +  + L  +L    + +     N   +   ID + +S 
Sbjct: 146 MLGQAIEPNAFTLSSILKACSQLENLHLGKTLHAVVFIRGFHSNNNVVACALIDMYGRSR 205

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH--GIKESASTFSSV 116
            ++ A+K+FDE+P  D V +  +IS   +    ++A+ ++  M     G++    TF ++
Sbjct: 206 VVDDARKVFDELPEPDYVCWTAVISTLARNDRFREAVRVFFAMHDGGLGLEVDGFTFGTL 265

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L+ C N G+   G ++H +V++LG   N+++ S L+D+Y + G    A  +FD L E+N 
Sbjct: 266 LNACGNLGWLRMGREVHGKVVTLGMKGNVFVESSLLDMYGKCGEVGCARVVFDGLEEKNE 325

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH-S 235
                ML  +C       VL +  + ++     +  SF  ++R CS    + +G ++H  
Sbjct: 326 VALTAMLGVYCHNGECGSVLGLVREWRS---MVDVYSFGTIIRACSGLAAVRQGNEVHCQ 382

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           +V + GW DV   V +ALVD Y+ CGS+  A + F  +   ++I+WN+++  +A      
Sbjct: 383 YVRRGGWRDV--VVESALVDLYAKCGSVDFAYRLFSRMEARNLITWNAMIGGFAQNGRGQ 440

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFDHGSVHVQSA 354
           + +ELF  M     RP   SFV  L   S  G V  G++    + +  G   G VH  + 
Sbjct: 441 EGVELFEEMVKEGVRPDWISFVNVLFACSHNGLVDQGRRYFDLMRREYGIRPGVVHY-TC 499

Query: 355 LTDMYGKCNVIESSVAVFESAPGR 378
           + D+ G+  +IE + ++ ESA  R
Sbjct: 500 MIDILGRAELIEEAESLLESADCR 523


>gi|334185027|ref|NP_186882.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546764|sp|Q9FWA6.2|PP207_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g02330
 gi|332640272|gb|AEE73793.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 903

 Score =  281 bits (719), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 181/642 (28%), Positives = 324/642 (50%), Gaps = 26/642 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ +++  +D + K      + ++F  +P ++ V+++ +I+GC +      AL  + EM 
Sbjct: 214 DVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQ 273

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                 S S ++SVL  C+       G Q+H   L   F  +  + +  +D+Y +     
Sbjct: 274 KVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGIVRTATLDMYAKCDNMQ 333

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD     N  ++N M+  + +     + L +++++ + G+  + +S   + R C+
Sbjct: 334 DAQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACA 393

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +   L EG Q++   IK   + +++ VANA +D Y  C +L EA + FD +   D +SWN
Sbjct: 394 LVKGLSEGLQIYGLAIKSS-LSLDVCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSWN 452

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++ +      ++ L LF  M   R  P   +F   L  A   G++ +G +IH  + K 
Sbjct: 453 AIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILK-ACTGGSLGYGMEIHSSIVKS 511

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAV----FESAP-------------GRSLECC-- 383
           G    S  V  +L DMY KC +IE +  +    F+ A               R  E C  
Sbjct: 512 GMASNS-SVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMCVS 570

Query: 384 -NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            NS+++  +     +DA  +F  M++ GI  D+ T +T L   +  ASA LG  + +H  
Sbjct: 571 WNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLG--KQIHAQ 628

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
            IK   +S++ +  +L+D YS+CG +  S  +FEK    + V + +++ GY+ +G G EA
Sbjct: 629 VIKKELQSDVYICSTLVDMYSKCGDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEA 688

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           + + E MI   + P+ VTF+ +L  C H G++ +G   F  MK  YG+D    HYS M+D
Sbjct: 689 IQLFERMILENIKPNHVTFISILRACAHMGLIDKGLEYFYMMKRDYGLDPQLPHYSNMVD 748

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI-IGRRVANILMELEPVDFA 621
           +LG++G + +A EL+++ P   D ++W +LL  C +H N + +       L+ L+P D +
Sbjct: 749 ILGKSGKVKRALELIREMPFEADDVIWRTLLGVCTIHRNNVEVAEEATAALLRLDPQDSS 808

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            Y+ +SN Y++ G +E    +R      KL ++ G S +E+ 
Sbjct: 809 AYTLLSNVYADAGMWEKVSDLRRNMRGFKLKKEPGCSWVELK 850



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 155/603 (25%), Positives = 287/603 (47%), Gaps = 45/603 (7%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           +S+S++ D      P  ++ S N+ I+ + KS  +  A   F+ MP RD+V++N ++SG 
Sbjct: 100 VSASMVFDKM----PLRDVVSWNKMINGYSKSNDMFKANSFFNMMPVRDVVSWNSMLSGY 155

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
            +     +++ ++ +M   GI+    TF+ +L VCS     + G+QIH  V+ +G   ++
Sbjct: 156 LQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVCSFLEDTSLGMQIHGIVVRVGCDTDV 215

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
              S L+D+Y +    V +L +F  +PE+N  +W+ ++    + +     L+ + +M+  
Sbjct: 216 VAASALLDMYAKGKRFVESLRVFQGIPEKNSVSWSAIIAGCVQNNLLSLALKFFKEMQKV 275

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
               +   +  ++R C+    L  G QLH+H +K  +    I V  A +D Y+ C ++ +
Sbjct: 276 NAGVSQSIYASVLRSCAALSELRLGGQLHAHALKSDFAADGI-VRTATLDMYAKCDNMQD 334

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+  FD     +  S+N++++ Y+  +  F AL LF R+          S        + 
Sbjct: 335 AQILFDNSENLNRQSYNAMITGYSQEEHGFKALLLFHRLMSSGLGFDEISLSGVFRACAL 394

Query: 326 TGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
              +  G QI+G   K  L  D   V V +A  DMYGKC  +  +  VF+    R     
Sbjct: 395 VKGLSEGLQIYGLAIKSSLSLD---VCVANAAIDMYGKCQALAEAFRVFDEMRRRDAVSW 451

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N+++ +   +G   + + +F  M+   I  DE T  + LKA +     +LG    +H   
Sbjct: 452 NAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTFGSILKACT---GGSLGYGMEIHSSI 508

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQV----------------FEKIPSPNV---- 483
           +KSG  SN +V CSL+D YS+CG IE + ++                 EK+ +  +    
Sbjct: 509 VKSGMASNSSVGCSLIDMYSKCGMIEEAEKIHSRFFQRANVSGTMEELEKMHNKRLQEMC 568

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH---SGMVKE--GQ 538
           V + SI++GY       +A  +   M++ G+ PDK T+  VL  C +   +G+ K+   Q
Sbjct: 569 VSWNSIISGYVMKEQSEDAQMLFTRMMEMGITPDKFTYATVLDTCANLASAGLGKQIHAQ 628

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           ++   ++S      D    S ++DM  + G L  +  + +++    D + W++++     
Sbjct: 629 VIKKELQS------DVYICSTLVDMYSKCGDLHDSRLMFEKSL-RRDFVTWNAMICGYAH 681

Query: 599 HGN 601
           HG 
Sbjct: 682 HGK 684



 Score =  165 bits (418), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 124/536 (23%), Positives = 255/536 (47%), Gaps = 40/536 (7%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           R +V++N  ++    +R      Y  D  ++     S + FS V   C+  G    G Q 
Sbjct: 12  RSVVSFNRCLTEKISYRRVPSFSYFTD-FLNQVNSVSTTNFSFVFKECAKQGALELGKQA 70

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC---EL 189
           H  ++  GF    ++ + L+ +Y      V A  +FD++P R++ +WN M+  +    ++
Sbjct: 71  HAHMIISGFRPTTFVLNCLLQVYTNSRDFVSASMVFDKMPLRDVVSWNKMINGYSKSNDM 130

Query: 190 SRPDEVLRM----------------------------YNKMKAEGVEPNGLSFCYMVRGC 221
            + +    M                            +  M  EG+E +G +F  +++ C
Sbjct: 131 FKANSFFNMMPVRDVVSWNSMLSGYLQNGESLKSIEVFVDMGREGIEFDGRTFAIILKVC 190

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S       G Q+H  V+++G  D ++  A+AL+D Y+     +E+ + F  IP  + +SW
Sbjct: 191 SFLEDTSLGMQIHGIVVRVG-CDTDVVAASALLDMYAKGKRFVESLRVFQGIPEKNSVSW 249

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++I++     +L+  AL+ F  MQ      S   +   L   +    +  G Q+H +  K
Sbjct: 250 SAIIAGCVQNNLLSLALKFFKEMQKVNAGVSQSIYASVLRSCAALSELRLGGQLHAHALK 309

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             F    + V++A  DMY KC+ ++ +  +F+++   + +  N+++T      +   A+ 
Sbjct: 310 SDFAADGI-VRTATLDMYAKCDNMQDAQILFDNSENLNRQSYNAMITGYSQEEHGFKALL 368

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  ++  G+G DE++LS   +A ++    + G    ++  AIKS    ++ V+ + +D 
Sbjct: 369 LFHRLMSSGLGFDEISLSGVFRACALVKGLSEG--LQIYGLAIKSSLSLDVCVANAAIDM 426

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +C  +  + +VF+++   + V + +I+  + +NG G E L +   M++  + PD+ TF
Sbjct: 427 YGKCQALAEAFRVFDEMRRRDAVSWNAIIAAHEQNGKGYETLFLFVSMLRSRIEPDEFTF 486

Query: 522 LCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
             +L  C   G +  G  + +S+ KS  G+ ++      +IDM  + G++++AE++
Sbjct: 487 GSILKACT-GGSLGYGMEIHSSIVKS--GMASNSSVGCSLIDMYSKCGMIEEAEKI 539



 Score = 72.4 bits (176), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 52/199 (26%), Positives = 100/199 (50%), Gaps = 10/199 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ---PNPQLNIYSSNRTIDDFVKS 57
           M+   + P   T  T+  TC ++   S+ L    + Q      Q ++Y  +  +D + K 
Sbjct: 594 MMEMGITPDKFTYATVLDTCANLA--SAGLGKQIHAQVIKKELQSDVYICSTLVDMYSKC 651

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L+ ++ +F++   RD VT+N +I G       ++A+ L++ M+   IK +  TF S+L
Sbjct: 652 GDLHDSRLMFEKSLRRDFVTWNAMICGYAHHGKGEEAIQLFERMILENIKPNHVTFISIL 711

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ER 174
             C++ G   +G++ +  ++   +GL+  +   S +VD+  + G   RAL+L  E+P E 
Sbjct: 712 RACAHMGLIDKGLE-YFYMMKRDYGLDPQLPHYSNMVDILGKSGKVKRALELIREMPFEA 770

Query: 175 NLATWNLMLRAFCELSRPD 193
           +   W  +L   C + R +
Sbjct: 771 DDVIWRTLL-GVCTIHRNN 788


>gi|357114151|ref|XP_003558864.1| PREDICTED: pentatricopeptide repeat-containing protein At4g35130,
           chloroplastic-like [Brachypodium distachyon]
          Length = 782

 Score =  281 bits (719), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 171/610 (28%), Positives = 317/610 (51%), Gaps = 14/610 (2%)

Query: 62  SAKKLFDEMPA----RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           +A ++ D + A     D   +N++I G      P+ AL  Y  M++ G +    TF  V+
Sbjct: 55  AAGRMHDALAAVRSSPDAFLHNVVIRGFADAGLPEAALAAYRAMLAAGARPDRFTFPVVV 114

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
             C+  G   EG   H   + LG  G  +Y G+ L+  Y ++G    A  +FD +P R++
Sbjct: 115 KCCARLGALEEGRAAHSAAIRLGLVGSEVYTGNSLLAFYAKLGMVADAERVFDGMPVRDI 174

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEG--VEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
            TWN M+  +         L  + +M  EG  V+ +G+     +  C +   L +G+++H
Sbjct: 175 VTWNSMVDGYVSNGLGALALDCFREMH-EGLQVQHDGVGIIAALAACCLDSALMQGREVH 233

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           ++VI+ G ++ ++ V  +L+D Y  CG++  A+  F  +P   V++WN ++  YA     
Sbjct: 234 AYVIRHG-LEQDVKVGTSLLDMYCKCGAIASAEGMFATMPSRTVVTWNCMIGGYALNGCP 292

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-DHGSVHVQS 353
            +A + F +M+    +  + + +  L   ++T +  +G+ +HGYVT+  F  H  V +++
Sbjct: 293 EEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYVTRSQFLPH--VVLET 350

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL +MY K   ++SS  +F     ++L   N+++ + ++     +A+ +F  ++++ +  
Sbjct: 351 ALLEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYP 410

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D  T+S  + A  +     L  CR +H   ++  +  N  V+ ++M  Y+RCG +  S +
Sbjct: 411 DYFTMSAVVPAFVLLGL--LRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRK 468

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F+K+   +V+ + +I+ GY+ +G G+ AL+M   M   GL P++ TF+ VL  C+ SGM
Sbjct: 469 IFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSGM 528

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             EG + FN M+  YGI    +HY CM D+LGRAG L +  + ++  P      +W SLL
Sbjct: 529 ADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFRIWGSLL 588

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
            + R   +  I    A  + ELE  +   Y  +S+ Y++ G +E   +IR + + + L R
Sbjct: 589 TASRNRNDIDIAEYAAERIFELEHDNTGCYVILSSMYADAGRWEDVQRIRSSMMEKGLRR 648

Query: 654 DIGHSLIEVN 663
               S++E++
Sbjct: 649 TDARSIVELH 658



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 112/471 (23%), Positives = 218/471 (46%), Gaps = 9/471 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           +Y+ N  +  + K G +  A+++FD MP RD+VT+N ++ G         AL  + EM  
Sbjct: 143 VYTGNSLLAFYAKLGMVADAERVFDGMPVRDIVTWNSMVDGYVSNGLGALALDCFREMHE 202

Query: 104 H-GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++       + L+ C       +G ++H  V+  G   ++ +G+ L+D+Y + G   
Sbjct: 203 GLQVQHDGVGIIAALAACCLDSALMQGREVHAYVIRHGLEQDVKVGTSLLDMYCKCGAIA 262

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  +P R + TWN M+  +     P+E    + +MKAEG +   ++   ++  C+
Sbjct: 263 SAEGMFATMPSRTVVTWNCMIGGYALNGCPEEAFDCFVQMKAEGHQVEVVTAINLLAACA 322

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  G+ +H +V +  ++  ++ +  AL++ YS  G +  ++  F  +    ++SWN
Sbjct: 323 QTESSLYGRSVHGYVTRSQFLP-HVVLETALLEMYSKVGKVKSSETIFGQMTNKTLVSWN 381

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y   ++  +A+ LF  +      P   +    +      G +   +Q+H Y+ +L
Sbjct: 382 NMIAAYMYKEMYNEAITLFLELLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRL 441

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            +   ++ V +A+  MY +C  + SS  +F+   G+ +   N+++      G  K A+EM
Sbjct: 442 DYGENTL-VTNAVMHMYARCGDVVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEM 500

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M   G+  +E T  + L A SVS  A+ G  +  +      G    I     + D  
Sbjct: 501 FSEMKSNGLQPNESTFVSVLTACSVSGMADEGWIQ-FNLMQRDYGIIPQIEHYGCMTDLL 559

Query: 463 SRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            R G +    +  E IP +P    + S++   SRN   R  +D+ E   +R
Sbjct: 560 GRAGDLREVLKFIESIPITPTFRIWGSLLTA-SRN---RNDIDIAEYAAER 606



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/270 (21%), Positives = 125/270 (46%), Gaps = 26/270 (9%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ++ + K G + S++ +F +M  + +V++N +I+         +A+ L+ E+++  +    
Sbjct: 353 LEMYSKVGKVKSSETIFGQMTNKTLVSWNNMIAAYMYKEMYNEAITLFLELLNQPLYPDY 412

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T S+V+      G   +  Q+H  ++ L +G N  + + ++ +Y R G  V +  +FD+
Sbjct: 413 FTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGDVVSSRKIFDK 472

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  +++ +WN ++  +    +    L M+++MK+ G++PN  +F  ++  CS+  + DE 
Sbjct: 473 MAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTACSVSGMADE- 531

Query: 231 KQLHSHVIKLGWVDVNIFVAN-----------ALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                     GW+  N+   +            + D     G L E  K  + IP+    
Sbjct: 532 ----------GWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTF 581

Query: 280 S-WNSIVSI---YADYDLIFDALELFFRMQ 305
             W S+++      D D+   A E  F ++
Sbjct: 582 RIWGSLLTASRNRNDIDIAEYAAERIFELE 611



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 50/188 (26%), Positives = 88/188 (46%), Gaps = 3/188 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           +L+  L P   T++ + P    +  L     + SY  + +   N   +N  +  + + G 
Sbjct: 403 LLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIVRLDYGENTLVTNAVMHMYARCGD 462

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + S++K+FD+M  +D++++N +I G       K AL ++ EM S+G++ + STF SVL+ 
Sbjct: 463 VVSSRKIFDKMAGKDVISWNTIIMGYAIHGQGKIALEMFSEMKSNGLQPNESTFVSVLTA 522

Query: 120 CSNAGFYTEG-IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
           CS +G   EG IQ +      G    +     + DL  R G     L   + +P      
Sbjct: 523 CSVSGMADEGWIQFNLMQRDYGIIPQIEHYGCMTDLLGRAGDLREVLKFIESIPITPTFR 582

Query: 178 TWNLMLRA 185
            W  +L A
Sbjct: 583 IWGSLLTA 590


>gi|242056803|ref|XP_002457547.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
 gi|241929522|gb|EES02667.1| hypothetical protein SORBIDRAFT_03g009160 [Sorghum bicolor]
          Length = 762

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 181/644 (28%), Positives = 330/644 (51%), Gaps = 42/644 (6%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTY---NLLISGCGK---------------FRHPK--- 92
            V SG L +A+K+ D++P +  +     N ++ GC +                R+ K   
Sbjct: 47  LVSSGRLAAARKVLDQVPEKSTLYLRFLNRILLGCSRSCDLSAAKALFSAAARRNAKTWT 106

Query: 93  -------------QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL 139
                         A+ L+ +M+  G  E++    ++ +V +  G   +   +H  V  L
Sbjct: 107 IMMRMLPADGRGSDAVSLFRDMLREG--EASPDDVTITTVLNVPG--CDVGTLHPVVTKL 162

Query: 140 GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY 199
           GFG ++ + + L+D Y + G    A  +F E+P R+  T+N M+       R  E L ++
Sbjct: 163 GFGASVVVCNTLLDAYCKQGFIAAARRVFLEMPHRDSITYNAMIMGCSRQGRHGEALELF 222

Query: 200 NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA 259
             M+ EGV+ +  +F  ++   +  + L  G+Q+H   ++      N+FV NAL+DFYS 
Sbjct: 223 AAMRREGVDTSHFTFSSLLTVATGMVDLHLGRQIHGLFVRAN-PSCNVFVNNALLDFYSK 281

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319
           C SL + K+ FD +   D +S+N ++S  +       AL+LF  MQ          +   
Sbjct: 282 CDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMALQLFRDMQTLGFDRRTLPYASL 341

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L+ A    ++  G+QIH  +   G       V +AL DMY KC +++++  +F     ++
Sbjct: 342 LSVAGALPHIKIGRQIHAQLILHGLTLEDF-VGNALIDMYSKCGMLDAAKTIFAYKSDKT 400

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
                +L+T  + +G  ++A+++F  M   G+  D  T S+ +K+ S  A   +G  R L
Sbjct: 401 AISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATCSSIMKSSSSLAVIGIG--RQL 458

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H    KSG   ++    +L+D Y++CG ++ + + F ++P  N + + ++++ Y++ G  
Sbjct: 459 HAYLTKSGHMPSVFSGSALLDMYAKCGCLDEAIRTFNEMPEKNSITWNAVISAYAQYGQA 518

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
           + A+ M + M+  GL PD VTFL VLA C H+G+ +E    F+ M+  Y +   ++HYSC
Sbjct: 519 KNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMKYFDLMRYYYSMSPWKEHYSC 578

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           +ID LGRAG  DK ++++ + P   D ++WSS+L SCR++GN+ +    A  L  + P D
Sbjct: 579 VIDTLGRAGCFDKIQKVIDEMPFEDDPIIWSSILHSCRIYGNQDLATVAAEKLFTMVPTD 638

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
              Y  +SN Y++ G +E + ++++    R + ++ G+S +E+ 
Sbjct: 639 ATAYVILSNIYAKAGNWEGAARVKKIMRDRGVKKESGNSWVEIK 682



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 99/367 (26%), Positives = 179/367 (48%), Gaps = 14/367 (3%)

Query: 35  YCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           + + NP  N++ +N  +D + K   L   K+LFDEM  RD V+YN++IS C   R    A
Sbjct: 260 FVRANPSCNVFVNNALLDFYSKCDSLGDLKQLFDEMSERDNVSYNVMISACSWNRCGGMA 319

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
           L L+ +M + G       ++S+LSV         G QIH +++  G  L  ++G+ L+D+
Sbjct: 320 LQLFRDMQTLGFDRRTLPYASLLSVAGALPHIKIGRQIHAQLILHGLTLEDFVGNALIDM 379

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y + G    A  +F    ++   +W  ++    +  + +E L+++  M+  G+ P+  + 
Sbjct: 380 YSKCGMLDAAKTIFAYKSDKTAISWTALITGCVQNGQNEEALQLFCDMRRAGLSPDRATC 439

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             +++  S   ++  G+QLH+++ K G +  ++F  +AL+D Y+ CG L EA ++F+ +P
Sbjct: 440 SSIMKSSSSLAVIGIGRQLHAYLTKSGHMP-SVFSGSALLDMYAKCGCLDEAIRTFNEMP 498

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV----- 329
             + I+WN+++S YA Y    +A+ +F  M  C   P   +F+  L      G       
Sbjct: 499 EKNSITWNAVISAYAQYGQAKNAIRMFDSMLHCGLCPDPVTFLSVLAACGHNGLAEECMK 558

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
           YF    + Y      +H      S + D  G+    +    V +  P    E    + +S
Sbjct: 559 YFDLMRYYYSMSPWKEH-----YSCVIDTLGRAGCFDKIQKVIDEMP---FEDDPIIWSS 610

Query: 390 LLHSGNI 396
           +LHS  I
Sbjct: 611 ILHSCRI 617


>gi|15233050|ref|NP_191676.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
 gi|6850884|emb|CAB71047.1| putative protein [Arabidopsis thaliana]
 gi|332646643|gb|AEE80164.1| pentatricopeptide (PPR) repeat-containing protein [Arabidopsis
           thaliana]
          Length = 783

 Score =  281 bits (718), Expect = 9e-73,   Method: Compositional matrix adjust.
 Identities = 182/624 (29%), Positives = 316/624 (50%), Gaps = 41/624 (6%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ + ++ N  I  +  S  L+ A+KLF   P ++ +++N LISG  K     +A  L+ 
Sbjct: 55  PERDEFTWNTMIVAYSNSRRLSDAEKLFRSNPVKNTISWNALISGYCKSGSKVEAFNLFW 114

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM S GIK +  T  SVL +C++      G QIH   +  GF L++ + + L+ +Y +  
Sbjct: 115 EMQSDGIKPNEYTLGSVLRMCTSLVLLLRGEQIHGHTIKTGFDLDVNVVNGLLAMYAQCK 174

Query: 160 PSVRALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
               A  LF+ +  E+N  TW  ML  + +     + +  +  ++ EG + N  +F  ++
Sbjct: 175 RISEAEYLFETMEGEKNNVTWTSMLTGYSQNGFAFKAIECFRDLRREGNQSNQYTFPSVL 234

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+       G Q+H  ++K G+   NI+V +AL+D Y+ C  +  A+   + + VDDV
Sbjct: 235 TACASVSACRVGVQVHCCIVKSGF-KTNIYVQSALIDMYAKCREMESARALLEGMEVDDV 293

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN-FASRTGNVYFGKQIHG 337
           +SWNS++       LI +AL +F RM     +    +    LN FA     +      H 
Sbjct: 294 VSWNSMIVGCVRQGLIGEALSMFGRMHERDMKIDDFTIPSILNCFALSRTEMKIASSAHC 353

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            + K G+    + V +AL DMY K  +++S++ VFE    + +    +L+T   H+G+  
Sbjct: 354 LIVKTGYATYKL-VNNALVDMYAKRGIMDSALKVFEGMIEKDVISWTALVTGNTHNGSYD 412

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+++F  M   GI  D++  ++ L A +       G  + +H   IKSGF S+++V+ S
Sbjct: 413 EALKLFCNMRVGGITPDKIVTASVLSASAELTLLEFG--QQVHGNYIKSGFPSSLSVNNS 470

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+  Y++CG +E ++ +F  +   +++ +T ++ GY++N                     
Sbjct: 471 LVTMYTKCGSLEDANVIFNSMEIRDLITWTCLIVGYAKN--------------------- 509

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
                         G++++ Q  F+SM++VYGI    +HY+CMID+ GR+G   K E+LL
Sbjct: 510 --------------GLLEDAQRYFDSMRTVYGITPGPEHYACMIDLFGRSGDFVKVEQLL 555

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            Q     D  +W ++L + R HGN   G R A  LMELEP +   Y Q+SN YS  G  +
Sbjct: 556 HQMEVEPDATVWKAILAASRKHGNIENGERAAKTLMELEPNNAVPYVQLSNMYSAAGRQD 615

Query: 638 VSMQIRETALARKLTRDIGHSLIE 661
            +  +R    +R ++++ G S +E
Sbjct: 616 EAANVRRLMKSRNISKEPGCSWVE 639


>gi|302793382|ref|XP_002978456.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
 gi|300153805|gb|EFJ20442.1| hypothetical protein SELMODRAFT_108616 [Selaginella moellendorffii]
          Length = 899

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 176/627 (28%), Positives = 330/627 (52%), Gaps = 21/627 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-I 106
           N  ++ + K G ++ AK +F+ +P R++V++N LI+   +  H K A+ ++  M   G +
Sbjct: 165 NAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSV 224

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + + +TF SV+  CSN      G   H R++  GF   L++G+ LV++Y + G   RA  
Sbjct: 225 RPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFDSYLFVGNSLVNMYGKCGSVDRARL 284

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F+++  RN+ +W +M+ A+ +         +Y +M     EPN ++F  ++  C     
Sbjct: 285 VFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMD---CEPNAVTFMAVMDSCLRPED 341

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDVISWNSI 284
           L   +Q+H+H++  G+ D +  +   LV  Y  CGS+  A   F+ +    ++ ++WN++
Sbjct: 342 LPRAEQIHAHMVASGF-DSDAVLQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAM 400

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S  A +     ALE F++M+L   RP+  +++  L   S   ++  G+Q+H  +  L  
Sbjct: 401 ISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEACSSLNDLTRGRQLHARI--LLE 458

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +    ++ +A+ +MYGKC  ++ ++  F   P R +   N+++ +    G+ + A+E F 
Sbjct: 459 NIHEANLSNAVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFK 518

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG--FESNIAVSCSLMDAY 462
            M  EG   D  T    + A     S  LG  + +H     +    E +  V+ +L+  Y
Sbjct: 519 QMDLEGWTTDRATYLGAIDACGSVPSLALG--KTIHSIVATAAPCLEQDPGVATALVTMY 576

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           +RCG +  +  VF +  S N+V +++++   +++G   EALD+   M  +G  PD +TF 
Sbjct: 577 ARCGSLHDAKSVFWRSHSRNLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFS 636

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            ++A C+  G+VK+G   F SM   Y I A   H+  M+D+LGRAG L++AE+++++ P 
Sbjct: 637 TLVAACSRRGVVKDGVFYFVSMVEDYSIPASEDHFGGMVDLLGRAGWLEEAEQVMRKNPC 696

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ----VSNFYSEIGEFEV 638
               +  + LL +C VHG+   G R+A   +EL+  + A ++     ++  Y   G +E 
Sbjct: 697 A---LAHAVLLGACHVHGDVERGIRIAQSALELDWKNSASFAASMAMLAELYGAAGRWED 753

Query: 639 SMQIRETALARKLTRDI-GHSLIEVNS 664
           + ++R+   +R   R+  G S IEV +
Sbjct: 754 AARVRKAVESRNARREPGGRSWIEVKN 780



 Score =  249 bits (636), Expect = 3e-63,   Method: Compositional matrix adjust.
 Identities = 167/567 (29%), Positives = 301/567 (53%), Gaps = 18/567 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +N Y  N  I  + K G L  A ++F+ +P  ++ ++  LI+   K  H ++ L L+ +M
Sbjct: 59  VNRYIQNHLIFMYAKCGCLEDALEVFELLPNPNVFSWTALITAYAKEGHLREVLGLFRKM 118

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIH-CRVLSLGFGLNLYIGSPLVDLYMRMGP 160
              G K  A  FS+VL+ CS+AG   EG  IH C VL+ G    + +G+ +V+LY + G 
Sbjct: 119 QLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCAVLA-GMETQV-VGNAIVNLYGKCGR 176

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVR 219
              A  +F+ LPERNL +WN ++ A  +     + +++++ M  +G V PN  +F  +V 
Sbjct: 177 VHEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFHLMDLDGSVRPNDATFVSVVD 236

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS  + L  GK  H  +I+ G+ D  +FV N+LV+ Y  CGS+  A+  F+ +   +V+
Sbjct: 237 ACSNLLDLPRGKSTHERIIRTGF-DSYLFVGNSLVNMYGKCGSVDRARLVFEKMSSRNVV 295

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW  ++  YA    I  A +L+ RM      P+  +F+  ++   R  ++   +QIH ++
Sbjct: 296 SWTVMIWAYAQQGFIRAAFDLYKRMDC---EPNAVTFMAVMDSCLRPEDLPRAEQIHAHM 352

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC--NSLMTSLLHSGNIK 397
              GFD  +V +Q  L  MYGKC  ++S+ ++FE+   RS      N++++ L   G  K
Sbjct: 353 VASGFDSDAV-LQVCLVTMYGKCGSVDSAWSIFENLKERSNNAVTWNAMISGLAQHGESK 411

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC-CAIKSGFESNIAVSC 456
            A+E F  M  EG+  + VT   +L+A   S+  +L   R LH    +++  E+N+  S 
Sbjct: 412 QALECFWKMELEGVRPNSVTYLASLEA--CSSLNDLTRGRQLHARILLENIHEANL--SN 467

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           ++++ Y +CG ++ +   F K+P  +VV + +++  Y+++G GR+AL+  + M   G   
Sbjct: 468 AVINMYGKCGSLDEAMDEFAKMPERDVVSWNTMIATYAQHGSGRQALEFFKQMDLEGWTT 527

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG-IDADRQHYSCMIDMLGRAGILDKAEE 575
           D+ T+L  +  C     +  G+ + + + +    ++ D    + ++ M  R G L  A+ 
Sbjct: 528 DRATYLGAIDACGSVPSLALGKTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKS 587

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           +  ++    + + WS+L+ +C  HG E
Sbjct: 588 VFWRSH-SRNLVTWSNLIAACAQHGRE 613



 Score =  201 bits (510), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 138/522 (26%), Positives = 267/522 (51%), Gaps = 25/522 (4%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           + ++S+L  C+       G  +H  +LS G G+N YI + L+ +Y + G    AL++F+ 
Sbjct: 27  ARYASLLQKCTEQKSAAAGKLVHQHILSSGCGVNRYIQNHLIFMYAKCGCLEDALEVFEL 86

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           LP  N+ +W  ++ A+ +     EVL ++ KM+ +G +P+   F  ++  CS    L+EG
Sbjct: 87  LPNPNVFSWTALITAYAKEGHLREVLGLFRKMQLDGTKPDAFVFSTVLTACSSAGALNEG 146

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K +H   +  G ++  + V NA+V+ Y  CG + EAK  F+ +P  +++SWN++++  A 
Sbjct: 147 KAIHDCAVLAG-METQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQ 204

Query: 291 YDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                DA+++F  M L    RP+  +FV  ++  S   ++  GK  H  + + GFD   +
Sbjct: 205 NGHCKDAMQVFHLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFD-SYL 263

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V ++L +MYGKC  ++ +  VFE    R++     ++ +    G I+ A +++  M  E
Sbjct: 264 FVGNSLVNMYGKCGSVDRARLVFEKMSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRMDCE 323

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
               + VT    +   S     +L     +H   + SGF+S+  +   L+  Y +CG ++
Sbjct: 324 P---NAVTFMAVMD--SCLRPEDLPRAEQIHAHMVASGFDSDAVLQVCLVTMYGKCGSVD 378

Query: 470 LSHQVFEKIP--SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
            +  +FE +   S N V + ++++G +++G  ++AL+    M   G+ P+ VT+L  L  
Sbjct: 379 SAWSIFENLKERSNNAVTWNAMISGLAQHGESKQALECFWKMELEGVRPNSVTYLASLEA 438

Query: 528 CNHSGMVKEGQLVFNS--MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           C+    +  G+ +     +++++  +      + +I+M G+ G LD+A +   + P   D
Sbjct: 439 CSSLNDLTRGRQLHARILLENIHEANLS----NAVINMYGKCGSLDEAMDEFAKMP-ERD 493

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANIL--MELE--PVDFAVY 623
            + W++++ +   HG+   GR+       M+LE    D A Y
Sbjct: 494 VVSWNTMIATYAQHGS---GRQALEFFKQMDLEGWTTDRATY 532


>gi|334186228|ref|NP_191896.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332646951|gb|AEE80472.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 884

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 180/620 (29%), Positives = 322/620 (51%), Gaps = 11/620 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           N  +  + K+  L++A++LFD    + D V +N ++S         + L L+ EM   G 
Sbjct: 221 NALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGP 280

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
             ++ T  S L+ C    +   G +IH  VL S      LY+ + L+ +Y R G   +A 
Sbjct: 281 APNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 340

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +  ++   ++ TWN +++ + +     E L  ++ M A G + + +S   ++       
Sbjct: 341 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 400

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L  G +LH++VIK GW D N+ V N L+D YS C       ++F  +   D+ISW +++
Sbjct: 401 NLLAGMELHAYVIKHGW-DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVI 459

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLG 343
           + YA  D   +ALELF    + +KR  I   +    L  +S   ++   K+IH ++ + G
Sbjct: 460 AGYAQNDCHVEALELF--RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 517

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                  +Q+ L D+YGKC  +  +  VFES  G+ +    S+++S   +GN  +AVE+F
Sbjct: 518 L--LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELF 575

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             MV+ G+  D V L   L A +  ++ N G  R +HC  ++ GF    +++ +++D Y+
Sbjct: 576 RRMVETGLSADSVALLCILSAAASLSALNKG--REIHCYLLRKGFCLEGSIAVAVVDMYA 633

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
            CG ++ +  VF++I    ++ +TS++N Y  +G G+ A+++ + M    + PD ++FL 
Sbjct: 634 CCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLA 693

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L  C+H+G++ EG+     M+  Y ++   +HY C++DMLGRA  + +A E ++     
Sbjct: 694 LLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTE 753

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W +LL +CR H  + IG   A  L+ELEP +      VSN ++E G +    ++R
Sbjct: 754 PTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVR 813

Query: 644 ETALARKLTRDIGHSLIEVN 663
               A  + +  G S IE++
Sbjct: 814 AKMKASGMEKHPGCSWIEMD 833



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 129/472 (27%), Positives = 229/472 (48%), Gaps = 5/472 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G L+ A+K+FDEMP R    +N +I        P  AL LY  M   G+    S+F
Sbjct: 126 YGKCGSLDDAEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSF 185

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            ++L  C+       G ++H  ++ LG+    +I + LV +Y +      A  LFD   E
Sbjct: 186 PALLKACAKLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 245

Query: 174 RNLAT-WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +  A  WN +L ++    +  E L ++ +M   G  PN  +    +  C        GK+
Sbjct: 246 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKE 305

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H+ V+K       ++V NAL+  Y+ CG + +A++    +   DV++WNS++  Y    
Sbjct: 306 IHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNL 365

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           +  +ALE F  M     +    S    +  + R  N+  G ++H YV K G+D  ++ V 
Sbjct: 366 MYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVG 424

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           + L DMY KCN+       F     + L    +++     +    +A+E+F  +  + + 
Sbjct: 425 NTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRME 484

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           +DE+ L + L+A SV  S  +   + +HC  ++ G    + +   L+D Y +C ++  + 
Sbjct: 485 IDEMILGSILRASSVLKSMLI--VKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGYAT 541

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           +VFE I   +VV +TS+++  + NG   EA+++   M++ GL  D V  LC+
Sbjct: 542 RVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCI 593



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 136/502 (27%), Positives = 236/502 (47%), Gaps = 26/502 (5%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL-YIGSPLVDLYMRMGPSVRALDLFDE 170
            F+ VL +C      ++G Q+H R+        L ++   LV +Y + G    A  +FDE
Sbjct: 82  AFAYVLELCGKRRAVSQGRQLHSRIFKTFPSFELDFLAGKLVFMYGKCGSLDDAEKVFDE 141

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS-FCYMVRGCSIGMLLDE 229
           +P+R    WN M+ A+     P   L +Y  M+ EGV P GLS F  +++ C+    +  
Sbjct: 142 MPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGV-PLGLSSFPALLKACAKLRDIRS 200

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FIPVDDVISWNSIVSIY 288
           G +LHS ++KLG+     F+ NALV  Y+    L  A++ FD F    D + WNSI+S Y
Sbjct: 201 GSELHSLLVKLGYHSTG-FIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSY 259

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           +      + LELF  M +    P+  + V  L           GK+IH  V K       
Sbjct: 260 STSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSE 319

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           ++V +AL  MY +C  +  +  +        +   NSL+   + +   K+A+E F  M+ 
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 379

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
            G   DEV++++ + A      +NL +   LH   IK G++SN+ V  +L+D YS+C   
Sbjct: 380 AGHKSDEVSMTSIIAA--SGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLT 437

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
               + F ++   +++ +T+++ GY++N    EAL++   + ++ +  D++         
Sbjct: 438 CYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMIL------- 490

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDA--------DRQHYSCMIDMLGRAGILDKAEELLQQT 580
              G +     V  SM  V  I          D    + ++D+ G+   +  A  + +  
Sbjct: 491 ---GSILRASSVLKSMLIVKEIHCHILRKGLLDTVIQNELVDVYGKCRNMGYATRVFESI 547

Query: 581 PGGGDCMMWSSLLRSCRVHGNE 602
             G D + W+S++ S  ++GNE
Sbjct: 548 K-GKDVVSWTSMISSSALNGNE 568



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 190/384 (49%), Gaps = 5/384 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           +Y  N  I  + + G +  A+++  +M   D+VT+N LI G  +    K+AL  + +M++
Sbjct: 320 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 379

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G K    + +S+++          G+++H  V+  G+  NL +G+ L+D+Y +   +  
Sbjct: 380 AGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCY 439

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
               F  + +++L +W  ++  + +     E L ++  +  + +E + +    ++R  S+
Sbjct: 440 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 499

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +   K++H H+++ G +D    + N LVD Y  C ++  A + F+ I   DV+SW S
Sbjct: 500 LKSMLIVKEIHCHILRKGLLDT--VIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTS 557

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S  A      +A+ELF RM          + +  L+ A+    +  G++IH Y+ + G
Sbjct: 558 MISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKG 617

Query: 344 F-DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           F   GS+ V  A+ DMY  C  ++S+ AVF+    + L    S++ +    G  K AVE+
Sbjct: 618 FCLEGSIAV--AVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVEL 675

Query: 403 FGFMVDEGIGLDEVTLSTTLKALS 426
           F  M  E +  D ++    L A S
Sbjct: 676 FDKMRHENVSPDHISFLALLYACS 699



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 35/358 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY---- 98
           N+   N  ID + K        + F  M  +D++++  +I+G  +     +AL L+    
Sbjct: 420 NLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVA 479

Query: 99  ------DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
                 DEM+   I  ++S   S+L V           +IHC +L  G  L+  I + LV
Sbjct: 480 KKRMEIDEMILGSILRASSVLKSMLIV----------KEIHCHILRKGL-LDTVIQNELV 528

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D+Y +      A  +F+ +  +++ +W  M+ +        E + ++ +M   G+  + +
Sbjct: 529 DVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSV 588

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++   +    L++G+++H ++++ G+  +   +A A+VD Y+ CG L  AK  FD 
Sbjct: 589 ALLCILSAAASLSALNKGREIHCYLLRKGFC-LEGSIAVAVVDMYACCGDLQSAKAVFDR 647

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           I    ++ + S+++ Y  +     A+ELF +M+     P   SF+  L   S  G +  G
Sbjct: 648 IERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEG 707

Query: 333 KQI-----HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS---VAVFESAPGRSLEC 382
           +       H Y  +   +H        L DM G+ N +  +   V + ++ P   + C
Sbjct: 708 RGFLKIMEHEYELEPWPEH-----YVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWC 760



 Score = 80.5 bits (197), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 11/238 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+    N  +D + K  ++  A ++F+ +  +D+V++  +IS      +  +A+ L+  M
Sbjct: 519 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 578

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  G+   +     +LS  ++     +G +IHC +L  GF L   I   +VD+Y   G  
Sbjct: 579 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 638

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD +  + L  +  M+ A+         + +++KM+ E V P+ +SF  ++  C
Sbjct: 639 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 698

Query: 222 SIGMLLDEGK---QLHSHVIKL-GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           S   LLDEG+   ++  H  +L  W +  +     LVD       ++EA   F+F+ +
Sbjct: 699 SHAGLLDEGRGFLKIMEHEYELEPWPEHYV----CLVDMLGRANCVVEA---FEFVKM 749


>gi|11994503|dbj|BAB02568.1| unnamed protein product [Arabidopsis thaliana]
          Length = 1161

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 154/523 (29%), Positives = 286/523 (54%), Gaps = 6/523 (1%)

Query: 143 LNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM 202
           LNL   + L+D+Y +    + A  +FD +PERN+ +W+ ++            L ++++M
Sbjct: 410 LNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLKGSLSLFSEM 469

Query: 203 KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
             +G+ PN  +F   ++ C +   L++G Q+H   +K+G+ ++ + V N+LVD YS CG 
Sbjct: 470 GRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGF-EMMVEVGNSLVDMYSKCGR 528

Query: 263 LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC--RKRPSIRSFVEFL 320
           + EA+K F  I    +ISWN++++ +        AL+ F  MQ    ++RP   +    L
Sbjct: 529 INEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPDEFTLTSLL 588

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFD-HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
              S TG +Y GKQIHG++ + GF    S  +  +L D+Y KC  + S+   F+    ++
Sbjct: 589 KACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKAFDQIKEKT 648

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   +SL+      G   +A+ +F  + +    +D   LS+ +   +  A    G     
Sbjct: 649 MISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALLRQGKQMQA 708

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
               + SG E+  +V  S++D Y +CG ++ + + F ++   +V+ +T ++ GY ++G+G
Sbjct: 709 LAVKLPSGLET--SVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVITGYGKHGLG 766

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
           ++++ +   M++  + PD+V +L VL+ C+HSGM+KEG+ +F+ +   +GI    +HY+C
Sbjct: 767 KKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGIKPRVEHYAC 826

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           ++D+LGRAG L +A+ L+   P   +  +W +LL  CRVHG+  +G+ V  IL+ ++  +
Sbjct: 827 VVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCRVHGDIELGKEVGKILLRIDAKN 886

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            A Y  +SN Y + G +      RE    + L ++ G S +E+
Sbjct: 887 PANYVMMSNLYGQAGYWNEQGNARELGNIKGLKKEAGMSWVEI 929



 Score =  169 bits (428), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 127/468 (27%), Positives = 220/468 (47%), Gaps = 16/468 (3%)

Query: 33  DSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK 92
           D   +  P LN+ +SN  ID + K      A K+FD MP R++V+++ L+SG       K
Sbjct: 401 DPESETKPWLNLITSNYLIDMYCKCREPLMAYKVFDSMPERNVVSWSALMSGHVLNGDLK 460

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
            +L L+ EM   GI  +  TFS+ L  C       +G+QIH   L +GF + + +G+ LV
Sbjct: 461 GSLSLFSEMGRQGIYPNEFTFSTNLKACGLLNALEKGLQIHGFCLKIGFEMMVEVGNSLV 520

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE--PN 210
           D+Y + G    A  +F  + +R+L +WN M+  F       + L  +  M+   ++  P+
Sbjct: 521 DMYSKCGRINEAEKVFRRIVDRSLISWNAMIAGFVHAGYGSKALDTFGMMQEANIKERPD 580

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKS 269
             +   +++ CS   ++  GKQ+H  +++ G+    +  +  +LVD Y  CG L  A+K+
Sbjct: 581 EFTLTSLLKACSSTGMIYAGKQIHGFLVRSGFHCPSSATITGSLVDLYVKCGYLFSARKA 640

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           FD I    +ISW+S++  YA      +A+ LF R+Q    +    +    +   +    +
Sbjct: 641 FDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDSFALSSIIGVFADFALL 700

Query: 330 YFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
             GKQ+     KL  G +     V +++ DMY KC +++ +   F     + +     ++
Sbjct: 701 RQGKQMQALAVKLPSGLE---TSVLNSVVDMYLKCGLVDEAEKCFAEMQLKDVISWTVVI 757

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAI 444
           T     G  K +V +F  M+   I  DEV     L A S S     G     +LL    I
Sbjct: 758 TGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEGEELFSKLLETHGI 817

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
           K   E    V    +D   R G ++ +  + + +P  PNV  + ++++
Sbjct: 818 KPRVEHYACV----VDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLS 861



 Score = 92.4 bits (228), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 67/297 (22%), Positives = 149/297 (50%), Gaps = 12/297 (4%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D +VK G+L SA+K FD++  + M++++ LI G  +     +A+ L+  +     +  +
Sbjct: 625 VDLYVKCGYLFSARKAFDQIKEKTMISWSSLILGYAQEGEFVEAMGLFKRLQELNSQIDS 684

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
              SS++ V ++     +G Q+    + L  GL   + + +VD+Y++ G    A   F E
Sbjct: 685 FALSSIIGVFADFALLRQGKQMQALAVKLPSGLETSVLNSVVDMYLKCGLVDEAEKCFAE 744

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  +++ +W +++  + +     + +R++ +M    +EP+ + +  ++  CS   ++ EG
Sbjct: 745 MQLKDVISWTVVITGYGKHGLGKKSVRIFYEMLRHNIEPDEVCYLAVLSACSHSGMIKEG 804

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS--- 286
           ++L S +++   +   +     +VD     G L EAK   D +P+  +V  W +++S   
Sbjct: 805 EELFSKLLETHGIKPRVEHYACVVDLLGRAGRLKEAKHLIDTMPIKPNVGIWQTLLSLCR 864

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++ D +L  +  ++  R+    K P+  ++V   N   + G  Y+ +Q  G   +LG
Sbjct: 865 VHGDIELGKEVGKILLRIDA--KNPA--NYVMMSNLYGQAG--YWNEQ--GNARELG 913


>gi|449445027|ref|XP_004140275.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 833

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 181/627 (28%), Positives = 329/627 (52%), Gaps = 19/627 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI---SGCGKFRHPKQALYLYD 99
           ++Y  N  +  +   G LN A++LFDEMP RD+V++N +I   S  G +   +   Y + 
Sbjct: 193 DVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARN--YYFW 250

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            ++   IK +  +  S+L + +         +IHC  + +G    +   + LVD Y + G
Sbjct: 251 MILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCG 310

Query: 160 PSVRAL-DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
            SV+AL  +F+E  E+N  +WN ++       R  + L  +  M   G +PN ++   ++
Sbjct: 311 -SVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSIL 369

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
                      GK++H   +++G  + +IF+AN+L+D Y+  G   EA   F  +   ++
Sbjct: 370 PVLVELECFKAGKEIHGFSMRMG-TETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNI 428

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWN++++ YA   L  +A+    +MQ   + P+  +F   L   +R G +  GK+IH  
Sbjct: 429 VSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAM 488

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             ++G     + V ++L DMY KC  + S+  VF ++    +   N L+     + +   
Sbjct: 489 GVRIGLT-SDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSY-NILIIGYSETDDCLQ 546

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVS 455
           ++ +F  M   G   D V+         +SA ANL + +    +H  A+++   S++ VS
Sbjct: 547 SLNLFSEMRLLGKKPDVVSFVGV-----ISACANLAALKQGKEVHGVALRNHLYSHLFVS 601

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            SL+D Y++CG I+++ ++F +I   +V  + +++ GY   G    A+ M E M    + 
Sbjct: 602 NSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 661

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
            D V+++ VL+ C+H G+V+ G   F+ M +   ++    HY+CM+D+LGRAG +++A +
Sbjct: 662 YDLVSYIAVLSACSHGGLVERGWQYFSEMLA-QRLEPTEMHYTCMVDLLGRAGFVEEAAK 720

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L+QQ P   D  +W +LL +CR++GN  +GRR A  L EL+P     Y  +SN Y+E G 
Sbjct: 721 LIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGR 780

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++ + +IRE   +R   ++ G S +++
Sbjct: 781 WDEANKIRELMKSRGAKKNPGCSWVQI 807



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 140/542 (25%), Positives = 249/542 (45%), Gaps = 28/542 (5%)

Query: 51  IDDFVKSGHLNSAKKLFDE--MPARDMVTYNLLISGCG-KFRHPKQALYLYDEMVSHGIK 107
           I ++ K  H  S   LF++     R    +N LI      +         Y+ MV  G++
Sbjct: 97  ILNYAKFQHPGSFCSLFNQTFQNCRTAFLWNTLIRAHSIAWNGTFDGFETYNRMVRRGVQ 156

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               TF  VL +CS++    +G+++H  V  LGF  ++Y+G+ L+ LY   G    A  L
Sbjct: 157 LDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGFLNDARRL 216

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGML 226
           FDE+PER++ +WN ++          E    Y  M    V +PN +S   ++    I   
Sbjct: 217 FDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL---PISAA 273

Query: 227 LDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
           L++    +++H + +K+G +D  +   NALVD Y  CGS+    + F+     + +SWNS
Sbjct: 274 LEDEEMTRRIHCYSVKVG-LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEKNEVSWNS 332

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           I++  A     +DAL  F  M     +P+  +    L           GK+IHG+  ++G
Sbjct: 333 IINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMG 392

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            +   + + ++L DMY K      +  +F +   R++   N+++ +   +    +A+   
Sbjct: 393 TE-TDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFV 451

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M + G   + VT +  L A   +    LG  + +H   ++ G  S++ VS SL+D Y+
Sbjct: 452 IQMQETGECPNAVTFTNVLPA--CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYA 509

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG +  +  VF      + V +  ++ GYS      ++L++   M   G  PD V+F+ 
Sbjct: 510 KCGCLHSARNVFNT-SRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVG 568

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS------CMIDMLGRAGILDKAEELL 577
           V++ C +   +K+G       K V+G+      YS       ++D   + G +D A  L 
Sbjct: 569 VISACANLAALKQG-------KEVHGVALRNHLYSHLFVSNSLLDFYTKCGRIDIACRLF 621

Query: 578 QQ 579
            Q
Sbjct: 622 NQ 623



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 189/377 (50%), Gaps = 4/377 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+     P   TI+++ P    +    +   +  +  +   + +I+ +N  ID + KSGH
Sbjct: 353 MIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGH 412

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
              A  +F  +  R++V++N +I+     R P +A+    +M   G   +A TF++VL  
Sbjct: 413 STEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPA 472

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+  GF   G +IH   + +G   +L++ + L+D+Y + G    A ++F+    ++  ++
Sbjct: 473 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSY 531

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N+++  + E     + L ++++M+  G +P+ +SF  ++  C+    L +GK++H   ++
Sbjct: 532 NILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALR 591

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              +  ++FV+N+L+DFY+ CG +  A + F+ I   DV SWN+++  Y     +  A+ 
Sbjct: 592 -NHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAIS 650

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  M+    +  + S++  L+  S  G V  G Q    +     +   +H  + + D+ 
Sbjct: 651 MFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHY-TCMVDLL 709

Query: 360 GKCNVIESSVAVFESAP 376
           G+   +E +  + +  P
Sbjct: 710 GRAGFVEEAAKLIQQLP 726


>gi|7523419|emb|CAB86438.1| putative protein [Arabidopsis thaliana]
          Length = 1017

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 180/620 (29%), Positives = 322/620 (51%), Gaps = 11/620 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           N  +  + K+  L++A++LFD    + D V +N ++S         + L L+ EM   G 
Sbjct: 184 NALVSMYAKNDDLSAARRLFDGFQEKGDAVLWNSILSSYSTSGKSLETLELFREMHMTGP 243

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
             ++ T  S L+ C    +   G +IH  VL S      LY+ + L+ +Y R G   +A 
Sbjct: 244 APNSYTIVSALTACDGFSYAKLGKEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAE 303

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +  ++   ++ TWN +++ + +     E L  ++ M A G + + +S   ++       
Sbjct: 304 RILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLS 363

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L  G +LH++VIK GW D N+ V N L+D YS C       ++F  +   D+ISW +++
Sbjct: 364 NLLAGMELHAYVIKHGW-DSNLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVI 422

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLG 343
           + YA  D   +ALELF    + +KR  I   +    L  +S   ++   K+IH ++ + G
Sbjct: 423 AGYAQNDCHVEALELF--RDVAKKRMEIDEMILGSILRASSVLKSMLIVKEIHCHILRKG 480

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                  +Q+ L D+YGKC  +  +  VFES  G+ +    S+++S   +GN  +AVE+F
Sbjct: 481 LL--DTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELF 538

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             MV+ G+  D V L   L A +  ++ N G  R +HC  ++ GF    +++ +++D Y+
Sbjct: 539 RRMVETGLSADSVALLCILSAAASLSALNKG--REIHCYLLRKGFCLEGSIAVAVVDMYA 596

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
            CG ++ +  VF++I    ++ +TS++N Y  +G G+ A+++ + M    + PD ++FL 
Sbjct: 597 CCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLA 656

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L  C+H+G++ EG+     M+  Y ++   +HY C++DMLGRA  + +A E ++     
Sbjct: 657 LLYACSHAGLLDEGRGFLKIMEHEYELEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTE 716

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W +LL +CR H  + IG   A  L+ELEP +      VSN ++E G +    ++R
Sbjct: 717 PTAEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVR 776

Query: 644 ETALARKLTRDIGHSLIEVN 663
               A  + +  G S IE++
Sbjct: 777 AKMKASGMEKHPGCSWIEMD 796



 Score =  196 bits (498), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 126/464 (27%), Positives = 224/464 (48%), Gaps = 5/464 (1%)

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           S +K+FDEMP R    +N +I        P  AL LY  M   G+    S+F ++L  C+
Sbjct: 97  SQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFPALLKACA 156

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT-WN 180
                  G ++H  ++ LG+    +I + LV +Y +      A  LFD   E+  A  WN
Sbjct: 157 KLRDIRSGSELHSLLVKLGYHSTGFIVNALVSMYAKNDDLSAARRLFDGFQEKGDAVLWN 216

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            +L ++    +  E L ++ +M   G  PN  +    +  C        GK++H+ V+K 
Sbjct: 217 SILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLGKEIHASVLKS 276

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
                 ++V NAL+  Y+ CG + +A++    +   DV++WNS++  Y    +  +ALE 
Sbjct: 277 STHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEF 336

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F  M     +    S    +  + R  N+  G ++H YV K G+D  ++ V + L DMY 
Sbjct: 337 FSDMIAAGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWD-SNLQVGNTLIDMYS 395

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           KCN+       F     + L    +++     +    +A+E+F  +  + + +DE+ L +
Sbjct: 396 KCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGS 455

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L+A SV  S  +   + +HC  ++ G    + +   L+D Y +C ++  + +VFE I  
Sbjct: 456 ILRASSVLKSMLI--VKEIHCHILRKGLLDTV-IQNELVDVYGKCRNMGYATRVFESIKG 512

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            +VV +TS+++  + NG   EA+++   M++ GL  D V  LC+
Sbjct: 513 KDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSVALLCI 556



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 99/384 (25%), Positives = 190/384 (49%), Gaps = 5/384 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           +Y  N  I  + + G +  A+++  +M   D+VT+N LI G  +    K+AL  + +M++
Sbjct: 283 LYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQNLMYKEALEFFSDMIA 342

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G K    + +S+++          G+++H  V+  G+  NL +G+ L+D+Y +   +  
Sbjct: 343 AGHKSDEVSMTSIIAASGRLSNLLAGMELHAYVIKHGWDSNLQVGNTLIDMYSKCNLTCY 402

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
               F  + +++L +W  ++  + +     E L ++  +  + +E + +    ++R  S+
Sbjct: 403 MGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVAKKRMEIDEMILGSILRASSV 462

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +   K++H H+++ G +D    + N LVD Y  C ++  A + F+ I   DV+SW S
Sbjct: 463 LKSMLIVKEIHCHILRKGLLDT--VIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTS 520

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S  A      +A+ELF RM          + +  L+ A+    +  G++IH Y+ + G
Sbjct: 521 MISSSALNGNESEAVELFRRMVETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKG 580

Query: 344 F-DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           F   GS+ V  A+ DMY  C  ++S+ AVF+    + L    S++ +    G  K AVE+
Sbjct: 581 FCLEGSIAV--AVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVEL 638

Query: 403 FGFMVDEGIGLDEVTLSTTLKALS 426
           F  M  E +  D ++    L A S
Sbjct: 639 FDKMRHENVSPDHISFLALLYACS 662



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 76/314 (24%), Positives = 152/314 (48%), Gaps = 8/314 (2%)

Query: 260 CGS--LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
           CG    +  +K FD +P     +WN+++  Y        AL L++ M++      + SF 
Sbjct: 90  CGKRRAVSQEKVFDEMPDRTAFAWNTMIGAYVSNGEPASALALYWNMRVEGVPLGLSSFP 149

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             L   ++  ++  G ++H  + KLG+ H +  + +AL  MY K + + ++  +F+    
Sbjct: 150 ALLKACAKLRDIRSGSELHSLLVKLGY-HSTGFIVNALVSMYAKNDDLSAARRLFDGFQE 208

Query: 378 RSLEC-CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
           +      NS+++S   SG   + +E+F  M   G   +  T+ + L A    + A LG  
Sbjct: 209 KGDAVLWNSILSSYSTSGKSLETLELFREMHMTGPAPNSYTIVSALTACDGFSYAKLG-- 266

Query: 437 RLLHCCAIKSGFESNIAVSC-SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
           + +H   +KS   S+    C +L+  Y+RCG +  + ++  ++ + +VV + S++ GY +
Sbjct: 267 KEIHASVLKSSTHSSELYVCNALIAMYTRCGKMPQAERILRQMNNADVVTWNSLIKGYVQ 326

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           N M +EAL+    MI  G   D+V+   ++A       +  G +  ++    +G D++ Q
Sbjct: 327 NLMYKEALEFFSDMIAAGHKSDEVSMTSIIAASGRLSNLLAG-MELHAYVIKHGWDSNLQ 385

Query: 556 HYSCMIDMLGRAGI 569
             + +IDM  +  +
Sbjct: 386 VGNTLIDMYSKCNL 399



 Score = 84.3 bits (207), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 160/358 (44%), Gaps = 35/358 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY---- 98
           N+   N  ID + K        + F  M  +D++++  +I+G  +     +AL L+    
Sbjct: 383 NLQVGNTLIDMYSKCNLTCYMGRAFLRMHDKDLISWTTVIAGYAQNDCHVEALELFRDVA 442

Query: 99  ------DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
                 DEM+   I  ++S   S+L V           +IHC +L  G  L+  I + LV
Sbjct: 443 KKRMEIDEMILGSILRASSVLKSMLIV----------KEIHCHILRKGL-LDTVIQNELV 491

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D+Y +      A  +F+ +  +++ +W  M+ +        E + ++ +M   G+  + +
Sbjct: 492 DVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRMVETGLSADSV 551

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++   +    L++G+++H ++++ G+  +   +A A+VD Y+ CG L  AK  FD 
Sbjct: 552 ALLCILSAAASLSALNKGREIHCYLLRKGFC-LEGSIAVAVVDMYACCGDLQSAKAVFDR 610

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           I    ++ + S+++ Y  +     A+ELF +M+     P   SF+  L   S  G +  G
Sbjct: 611 IERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYACSHAGLLDEG 670

Query: 333 KQI-----HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS---VAVFESAPGRSLEC 382
           +       H Y  +   +H        L DM G+ N +  +   V + ++ P   + C
Sbjct: 671 RGFLKIMEHEYELEPWPEH-----YVCLVDMLGRANCVVEAFEFVKMMKTEPTAEVWC 723



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 60/238 (25%), Positives = 114/238 (47%), Gaps = 11/238 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+    N  +D + K  ++  A ++F+ +  +D+V++  +IS      +  +A+ L+  M
Sbjct: 482 LDTVIQNELVDVYGKCRNMGYATRVFESIKGKDVVSWTSMISSSALNGNESEAVELFRRM 541

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V  G+   +     +LS  ++     +G +IHC +L  GF L   I   +VD+Y   G  
Sbjct: 542 VETGLSADSVALLCILSAAASLSALNKGREIHCYLLRKGFCLEGSIAVAVVDMYACCGDL 601

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +FD +  + L  +  M+ A+         + +++KM+ E V P+ +SF  ++  C
Sbjct: 602 QSAKAVFDRIERKGLLQYTSMINAYGMHGCGKAAVELFDKMRHENVSPDHISFLALLYAC 661

Query: 222 SIGMLLDEGK---QLHSHVIKL-GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           S   LLDEG+   ++  H  +L  W +  +     LVD       ++EA   F+F+ +
Sbjct: 662 SHAGLLDEGRGFLKIMEHEYELEPWPEHYV----CLVDMLGRANCVVEA---FEFVKM 712


>gi|225450995|ref|XP_002284834.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240 [Vitis vinifera]
          Length = 565

 Score =  281 bits (718), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 168/562 (29%), Positives = 306/562 (54%), Gaps = 18/562 (3%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL--YMRMGPSVRALDLFDE 170
           ++S+LS+        E  ++H  +++     ++   S LVD   Y   G    A  +F++
Sbjct: 5   YNSILSLLEKCKTMAELKRLHGLMITTSVIQDVIPLSRLVDFCAYSDSGNLNYAKSVFNQ 64

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +   +L  WN M++ +     PDE L MY +M+ +G  P+  +F ++++ CS+    + G
Sbjct: 65  IDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTFPFVLKACSLVNGYNLG 124

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           + +H+ ++K G+ +V+++ A AL+  Y+ACG +  A K FD IP  +V++W S+++    
Sbjct: 125 QCVHNCIVKTGF-EVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCIS 183

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD----- 345
            D   +A+ ++  M+L    P+  + V  L   +R+ ++  G+ +H    ++G D     
Sbjct: 184 NDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSN 243

Query: 346 -HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
            + +V + +A+ DMY KC  ++++  +F   P R+L   NS++ +    G   +A+++F 
Sbjct: 244 SNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFS 303

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSCSLMDA 461
            M   G   D+ T         + A A+LG   S + LH    K+    + A+  +L+D 
Sbjct: 304 DMRIAGFDPDKATFLCV-----IGACAHLGALVSGQALHAYVSKTNLTDDTAIGTALVDM 358

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVT 520
           Y++ G  E + QVF ++   +V  +TS++ G + +G G EAL   + M +   LIPD++T
Sbjct: 359 YAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEIT 418

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           ++ VL+ C+H G V++G+  F SMK+V+GI+   QHY CM+D+L RAG L +AE L+++ 
Sbjct: 419 YIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLVEKM 478

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   +  +WS+LL  C+++ N  +  RV   + ELE     VY  +SN Y+    +E   
Sbjct: 479 PVEPNTAIWSALLNGCKIYQNIDVADRVRRRVRELEVDGSGVYVLLSNIYAGACRWEEVK 538

Query: 641 QIRETALARKLTRDIGHSLIEV 662
             RE    RK+ + +GHS +E+
Sbjct: 539 MARELMKERKIQKSLGHSSVEM 560



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 122/449 (27%), Positives = 216/449 (48%), Gaps = 14/449 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +  SG+LN AK +F+++    +  +N +I G      P +AL +Y EM   G      TF
Sbjct: 49  YSDSGNLNYAKSVFNQIDRPSLYIWNSMIKGYSISESPDEALTMYREMRQKGYAPDHFTF 108

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             VL  CS    Y  G  +H  ++  GF +++Y  + L+ +Y   G    AL +FD++P+
Sbjct: 109 PFVLKACSLVNGYNLGQCVHNCIVKTGFEVDVYAATALLQMYAACGDMEAALKVFDDIPK 168

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            N+  W  ++        P E +R+Y  M+   V PN ++   ++  C+    L+ G+ +
Sbjct: 169 WNVVAWTSLIAGCISNDCPSEAVRVYKDMELWSVAPNEITMVNVLVACARSRDLNAGRWV 228

Query: 234 HSHVIKLGW------VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           H    ++G        + N+ +A A+VD Y+ CGSL  A+  F+ +P  ++++WNS++  
Sbjct: 229 HDRTGQMGLDPFQSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGA 288

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y  Y    +AL+LF  M++    P   +F+  +   +  G +  G+ +H YV+K      
Sbjct: 289 YNQYGQANEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDD 348

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +  + +AL DMY K    E +  VF     + +    SL+  L   G+ ++A+  F  M 
Sbjct: 349 TA-IGTALVDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQ 407

Query: 408 -DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS--GFESNIAVSCSLMDAYSR 464
            D  +  DE+T    L A S       G     H  ++K+  G E        ++D  SR
Sbjct: 408 EDTALIPDEITYIGVLSACSHVGKVEDGKN---HFISMKNVHGIEPTTQHYGCMVDLLSR 464

Query: 465 CGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
            G +  + ++ EK+P  PN   +++++NG
Sbjct: 465 AGRLGEAERLVEKMPVEPNTAIWSALLNG 493



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 80/302 (26%), Positives = 151/302 (50%), Gaps = 9/302 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++++Y++   +  +   G + +A K+FD++P  ++V +  LI+GC     P +A+ +Y +
Sbjct: 137 EVDVYAATALLQMYAACGDMEAALKVFDDIPKWNVVAWTSLIAGCISNDCPSEAVRVYKD 196

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-------GLNLYIGSPLVD 153
           M    +  +  T  +VL  C+ +     G  +H R   +G          N+ + + +VD
Sbjct: 197 MELWSVAPNEITMVNVLVACARSRDLNAGRWVHDRTGQMGLDPFQSNSNFNVILATAIVD 256

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A DLF+++P RNL  WN M+ A+ +  + +E L +++ M+  G +P+  +
Sbjct: 257 MYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQANEALDLFSDMRIAGFDPDKAT 316

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  ++  C+    L  G+ LH++V K    D +  +  ALVD Y+  G    A++ F  +
Sbjct: 317 FLCVIGACAHLGALVSGQALHAYVSKTNLTD-DTAIGTALVDMYAKSGDAERAQQVFSEL 375

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR-PSIRSFVEFLNFASRTGNVYFG 332
              DV +W S++   A +    +AL  F +MQ      P   +++  L+  S  G V  G
Sbjct: 376 QKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPDEITYIGVLSACSHVGKVEDG 435

Query: 333 KQ 334
           K 
Sbjct: 436 KN 437



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 66/267 (24%), Positives = 133/267 (49%), Gaps = 6/267 (2%)

Query: 32  LDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP 91
           LD + Q N   N+  +   +D + K G L +A+ LF++MP R++V +N +I    ++   
Sbjct: 237 LDPF-QSNSNFNVILATAIVDMYAKCGSLKTARDLFNKMPHRNLVAWNSMIGAYNQYGQA 295

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
            +AL L+ +M   G     +TF  V+  C++ G    G  +H  V       +  IG+ L
Sbjct: 296 NEALDLFSDMRIAGFDPDKATFLCVIGACAHLGALVSGQALHAYVSKTNLTDDTAIGTAL 355

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPN 210
           VD+Y + G + RA  +F EL ++++  W  ++         +E L  + KM+ +  + P+
Sbjct: 356 VDMYAKSGDAERAQQVFSELQKKDVTAWTSLIIGLAMHGHGEEALTFFKKMQEDTALIPD 415

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
            +++  ++  CS    +++GK     +  +  ++        +VD  S  G L EA++  
Sbjct: 416 EITYIGVLSACSHVGKVEDGKNHFISMKNVHGIEPTTQHYGCMVDLLSRAGRLGEAERLV 475

Query: 271 DFIPVD-DVISWNSIVS---IYADYDL 293
           + +PV+ +   W+++++   IY + D+
Sbjct: 476 EKMPVEPNTAIWSALLNGCKIYQNIDV 502


>gi|357154827|ref|XP_003576915.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like, partial [Brachypodium distachyon]
          Length = 735

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 172/627 (27%), Positives = 331/627 (52%), Gaps = 22/627 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYD 99
           ++++ N  +  +   GH   A+++FDEMPARD+V++N L+S       F   +QAL    
Sbjct: 110 DVFAGNTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALL--- 166

Query: 100 EMVSHGIKESASTFSSVLSVC---SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
            M+  G+  + ++  SV+  C      GF   G+ +H  VL  G    + +G+ LVD+Y 
Sbjct: 167 SMMRSGVPVNVASLVSVVPACGVEQEGGF---GLGVHGLVLKTGLDSIVNLGNALVDMYG 223

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    ++ +F+ +PERN  +WN  +  F       +VL ++  M   G  P  ++   
Sbjct: 224 KFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSS 283

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++         D G+++H + IK   ++++IFVAN+LVD Y+  GSL +A   F+ I V 
Sbjct: 284 LLPALVELGYFDLGREVHGYSIKRA-MELDIFVANSLVDMYAKFGSLEKACAVFEKIEVR 342

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +V+SWN++++         +A  L  +MQ   + P+  + V  L   SR  ++  GKQIH
Sbjct: 343 NVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTGKQIH 402

Query: 337 GYVTKLG--FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
            +  + G  FD   + + +AL DMY KC  +  + ++F+ +    +   N+L+     S 
Sbjct: 403 AWSIRTGLMFD---LFISNALIDMYAKCGQLRLAQSIFDLSEKDDVSY-NTLILGYSQSP 458

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
              +++ +F  +   GI  D ++    L A +  +S   G  + +H   ++    ++  +
Sbjct: 459 WSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQG--KEIHGVLVRRLLSNHPFL 516

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           + +L+  Y++ G ++ + ++F +I   +V  + +++ GY  +G    A  + ++M   G+
Sbjct: 517 ANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLMKDHGV 576

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
             D V+++ VL+ C+H G+V+ G+  F+ M +   ++  + HY+CM+D+LGR+G L ++ 
Sbjct: 577 TYDHVSYIAVLSVCSHGGLVERGKKYFSHMLA-QNLEPQQMHYACMVDLLGRSGQLTESV 635

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E++   P   +  +W +LL +CR+HGN  + +  A+ L EL+P     YS + N Y+E G
Sbjct: 636 EIILDMPFHANSDVWGALLGACRIHGNIELAQYAADHLFELKPEHSGYYSVLRNMYAEAG 695

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIE 661
            +  + +IR    +RK+ ++  +S ++
Sbjct: 696 RWNEAHKIRTLMKSRKVQKNPAYSWVQ 722



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 134/519 (25%), Positives = 247/519 (47%), Gaps = 21/519 (4%)

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT--EGIQIHCRVLSLGFGLNLYIG 148
           P +AL +Y+ M+  G+     TF   L   + A      +G+++H   L  G   +++ G
Sbjct: 55  PTEALLVYNHMLRSGVSPDDRTFPFALHAAAAAAQAHPAKGLELHAAALRSGHLADVFAG 114

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + LV  Y   G +  A  +FDE+P R++ +WN ++ +F      D+  +    M   GV 
Sbjct: 115 NTLVAFYAACGHAGDARRVFDEMPARDVVSWNSLVSSFLANKMFDDARQALLSMMRSGVP 174

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            N  S   +V  C +      G  +H  V+K G +D  + + NALVD Y   G +  + K
Sbjct: 175 VNVASLVSVVPACGVEQEGGFGLGVHGLVLKTG-LDSIVNLGNALVDMYGKFGHVEASMK 233

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F+ +P  + +SWNS +  + +  L  D L LF  M      P   +    L      G 
Sbjct: 234 VFEGMPERNEVSWNSAIGCFLNAGLYGDVLALFRGMSERGFMPGSITLSSLLPALVELGY 293

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
              G+++HGY  K   +   + V ++L DMY K   +E + AVFE    R++   N+++ 
Sbjct: 294 FDLGREVHGYSIKRAMEL-DIFVANSLVDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIA 352

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
           +L+ +G   +A  +   M  +G   + +TL   L A S  AS   G  + +H  +I++G 
Sbjct: 353 NLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMASLKTG--KQIHAWSIRTGL 410

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             ++ +S +L+D Y++CG + L+  +F+ +   + V + +++ GYS++    E+L++ + 
Sbjct: 411 MFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLILGYSQSPWSFESLNLFKQ 469

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR---QHYSCMIDMLG 565
           +   G+  D ++F+  L  C +    K+G       K ++G+   R    H      +LG
Sbjct: 470 LSSVGIEYDAISFMGALTACTNLSSFKQG-------KEIHGVLVRRLLSNHPFLANTLLG 522

Query: 566 ---RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
              + G+LD A ++  +     D   W++++    +HG 
Sbjct: 523 LYTKGGMLDTASKIFNRIK-EKDVASWNNMIMGYGMHGQ 560



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 130/419 (31%), Positives = 207/419 (49%), Gaps = 7/419 (1%)

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS--FCYMV 218
           S R L     L  R+   WN + RA    S P E L +YN M   GV P+  +  F    
Sbjct: 24  SSRLLLFHHPLRLRSAFLWNSLSRALSSASLPTEALLVYNHMLRSGVSPDDRTFPFALHA 83

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
              +      +G +LH+  ++ G +  ++F  N LV FY+ACG   +A++ FD +P  DV
Sbjct: 84  AAAAAQAHPAKGLELHAAALRSGHL-ADVFAGNTLVAFYAACGHAGDARRVFDEMPARDV 142

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWNS+VS +    +  DA +    M       ++ S V  +          FG  +HG 
Sbjct: 143 VSWNSLVSSFLANKMFDDARQALLSMMRSGVPVNVASLVSVVPACGVEQEGGFGLGVHGL 202

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V K G D   V++ +AL DMYGK   +E+S+ VFE  P R+    NS +   L++G   D
Sbjct: 203 VLKTGLD-SIVNLGNALVDMYGKFGHVEASMKVFEGMPERNEVSWNSAIGCFLNAGLYGD 261

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            + +F  M + G     +TLS+ L AL      +LG  R +H  +IK   E +I V+ SL
Sbjct: 262 VLALFRGMSERGFMPGSITLSSLLPALVELGYFDLG--REVHGYSIKRAMELDIFVANSL 319

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++ G +E +  VFEKI   NVV + +++    +NG   EA  ++  M + G  P+ 
Sbjct: 320 VDMYAKFGSLEKACAVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNS 379

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           +T + +L  C+    +K G+ + ++     G+  D    + +IDM  + G L  A+ + 
Sbjct: 380 ITLVNLLPACSRMASLKTGKQI-HAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIF 437



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 93/405 (22%), Positives = 186/405 (45%), Gaps = 7/405 (1%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAK 64
            +P   T+++L P    +        +  Y      +L+I+ +N  +D + K G L  A 
Sbjct: 274 FMPGSITLSSLLPALVELGYFDLGREVHGYSIKRAMELDIFVANSLVDMYAKFGSLEKAC 333

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            +F+++  R++V++N +I+   +     +A  L  +M   G   ++ T  ++L  CS   
Sbjct: 334 AVFEKIEVRNVVSWNAMIANLVQNGAESEAFGLVIKMQKDGECPNSITLVNLLPACSRMA 393

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G QIH   +  G   +L+I + L+D+Y + G    A  +FD L E++  ++N ++ 
Sbjct: 394 SLKTGKQIHAWSIRTGLMFDLFISNALIDMYAKCGQLRLAQSIFD-LSEKDDVSYNTLIL 452

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            + +     E L ++ ++ + G+E + +SF   +  C+      +GK++H  +++   + 
Sbjct: 453 GYSQSPWSFESLNLFKQLSSVGIEYDAISFMGALTACTNLSSFKQGKEIHGVLVRR-LLS 511

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            + F+AN L+  Y+  G L  A K F+ I   DV SWN+++  Y  +  I  A  LF  M
Sbjct: 512 NHPFLANTLLGLYTKGGMLDTASKIFNRIKEKDVASWNNMIMGYGMHGQIDAAFHLFDLM 571

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +         S++  L+  S  G V  GK+   ++     +   +H  + + D+ G+   
Sbjct: 572 KDHGVTYDHVSYIAVLSVCSHGGLVERGKKYFSHMLAQNLEPQQMHY-ACMVDLLGRSGQ 630

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
           +  SV +    P       + +  +LL +  I   +E+  +  D 
Sbjct: 631 LTESVEIILDMP---FHANSDVWGALLGACRIHGNIELAQYAADH 672


>gi|302801035|ref|XP_002982274.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
 gi|300149866|gb|EFJ16519.1| hypothetical protein SELMODRAFT_116224 [Selaginella moellendorffii]
          Length = 920

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 175/634 (27%), Positives = 329/634 (51%), Gaps = 16/634 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC-GKFRHPKQALYLYD 99
           + +++ +   +D + K G + SA ++F  +   D++ +N  I  C G    P +AL L  
Sbjct: 167 ERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVR 226

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G+  + ++F ++LS C +         IH RV  LGF  ++ + + LV +Y R G
Sbjct: 227 RMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCG 286

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               ++ +F+ +  RN  +WN M+ AF +         +Y +M+ EG  PN ++F   ++
Sbjct: 287 SVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALK 346

Query: 220 GC--SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
               S    L E   LH  +   G ++ ++ V  ALV  Y + G++  A+ +FD IP  +
Sbjct: 347 AACSSSSQDLGESAALHGWIACAG-LEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKN 405

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           ++SWN++++ Y D     +A+ELF  M+     P+  S++  L       +V   + IH 
Sbjct: 406 IVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCE---DVSEARSIHA 462

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            V   G       + + +  M+ +   +E +VA F++   +     N+ + +L    ++ 
Sbjct: 463 EVVGNGLFAQESSIANGVVRMFARSGSLEEAVAAFDATVVKDSVSWNTKVAALSAREDLH 522

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG-SCRLLHCCAIKSGFESNIAVSC 456
            A+  F  M  EG   D+ TL + +   +   +  LG S +     AI+   E ++ V+ 
Sbjct: 523 GAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIE--VERDVVVAS 580

Query: 457 SLMDAYSRCGH-IELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           ++M+  ++CG  ++   ++F ++P    ++V + +++  Y+++G GR+AL +  +M QR 
Sbjct: 581 AVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRS 640

Query: 514 LI-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILD 571
            + PD  TF+ VL+GC+H+G+V++G   F   + V GI+    +HY+C++D+LGR G L 
Sbjct: 641 SVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLR 700

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +AE+ +++ P   D ++W+SLL +C  +G+   G R A   +EL   D   Y  +SN Y+
Sbjct: 701 EAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYA 760

Query: 632 EIGEFEVSMQIRETALARKLTRDI-GHSLIEVNS 664
             G +E S+++RE    R++ + + G S I V +
Sbjct: 761 AAGRWEDSIRVREDMAERRVKKRVPGKSSIVVKN 794



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 157/570 (27%), Positives = 269/570 (47%), Gaps = 45/570 (7%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T + +L  C       +G Q+H +++  G   N  +G+ LV +Y +      A   F  L
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV---EPNGLSFCYMVRGCSIG---- 224
             R +ATWN ++ A    S P  V  +Y +MK E      PN L+   ++   + G    
Sbjct: 86  RSRGIATWNTLIAA---QSSPAAVFDLYTRMKLEERAENRPNKLTIIAVLGAIASGDPSS 142

Query: 225 ------MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
                   + + + +H   I+   ++ ++FVA AL+D Y  CG +  A + F  I V D+
Sbjct: 143 SSSSRAPSIAQARIVHDD-IRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDL 201

Query: 279 ISWNSIVSIYADYDLIFD-ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           I WN+ +   A  D   D AL L  RM L    P+  SFV  L+      ++   + IH 
Sbjct: 202 ICWNAAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHA 261

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            V +LGF  G V V +AL  MYG+C  ++ S+AVFE+   R+    N+++ +    G+  
Sbjct: 262 RVEELGF-LGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRS 320

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A  ++  M  EG   +++T  T LKA   S+S +LG    LH     +G E ++ V  +
Sbjct: 321 AAFAIYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTA 380

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+  Y   G I+ +   F+ IP+ N+V + +++  Y  NG  REA+++   M ++ L P+
Sbjct: 381 LVTMYGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPN 440

Query: 518 KVTFLCVLAGCN--------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
           KV++L VL  C         H+ +V  G  +F    S+          + ++ M  R+G 
Sbjct: 441 KVSYLAVLGCCEDVSEARSIHAEVVGNG--LFAQESSI---------ANGVVRMFARSGS 489

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE---PVDFAVYSQV 626
           L++A      T    D + W++ + +      ++ G   A   M+ E   P  F + S V
Sbjct: 490 LEEAVAAFDATV-VKDSVSWNTKVAALSAR-EDLHGAITAFYTMQHEGFRPDKFTLVS-V 546

Query: 627 SNFYSEIGEFEVSMQIRET-ALARKLTRDI 655
            +  +++G  E+   I++  + A ++ RD+
Sbjct: 547 VDVCADLGTLELGRSIQQQLSAAIEVERDV 576


>gi|449524410|ref|XP_004169216.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Cucumis sativus]
          Length = 684

 Score =  280 bits (717), Expect = 1e-72,   Method: Compositional matrix adjust.
 Identities = 181/627 (28%), Positives = 329/627 (52%), Gaps = 19/627 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI---SGCGKFRHPKQALYLYD 99
           ++Y  N  +  +   G LN A++LFDEMP RD+V++N +I   S  G +   +   Y + 
Sbjct: 44  DVYVGNTLLMLYGNCGFLNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARN--YYFW 101

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            ++   IK +  +  S+L + +         +IHC  + +G    +   + LVD Y + G
Sbjct: 102 MILRSVIKPNLVSVISLLPISAALEDEEMTRRIHCYSVKVGLDSQVTTCNALVDAYGKCG 161

Query: 160 PSVRAL-DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
            SV+AL  +F+E  E+N  +WN ++       R  + L  +  M   G +PN ++   ++
Sbjct: 162 -SVKALWQVFNETVEKNEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSIL 220

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
                      GK++H   +++G  + +IF+AN+L+D Y+  G   EA   F  +   ++
Sbjct: 221 PVLVELECFKAGKEIHGFSMRMG-TETDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNI 279

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWN++++ YA   L  +A+    +MQ   + P+  +F   L   +R G +  GK+IH  
Sbjct: 280 VSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPACARLGFLGPGKEIHAM 339

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             ++G     + V ++L DMY KC  + S+  VF ++    +   N L+     + +   
Sbjct: 340 GVRIGLT-SDLFVSNSLIDMYAKCGCLHSARNVFNTSRKDEVSY-NILIIGYSETDDCLQ 397

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVS 455
           ++ +F  M   G   D V+         +SA ANL + +    +H  A+++   S++ VS
Sbjct: 398 SLNLFSEMRLLGKKPDVVSFVGV-----ISACANLAALKQGKEVHGVALRNHLYSHLFVS 452

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            SL+D Y++CG I+++ ++F +I   +V  + +++ GY   G    A+ M E M    + 
Sbjct: 453 NSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAISMFEAMRDDTVQ 512

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
            D V+++ VL+ C+H G+V+ G   F+ M +   ++    HY+CM+D+LGRAG +++A +
Sbjct: 513 YDLVSYIAVLSACSHGGLVERGWQYFSEMLA-QRLEPTEMHYTCMVDLLGRAGFVEEAAK 571

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L+QQ P   D  +W +LL +CR++GN  +GRR A  L EL+P     Y  +SN Y+E G 
Sbjct: 572 LIQQLPIAPDANIWGALLGACRIYGNVELGRRAAEHLFELKPQHCGYYILLSNIYAETGR 631

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++ + +IRE   +R   ++ G S +++
Sbjct: 632 WDEANKIRELMKSRGAKKNPGCSWVQI 658



 Score =  158 bits (400), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 129/489 (26%), Positives = 231/489 (47%), Gaps = 25/489 (5%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           MV  G++    TF  VL +CS++    +G+++H  V  LGF  ++Y+G+ L+ LY   G 
Sbjct: 1   MVRRGVQLDDHTFPFVLKLCSDSFDICKGMEVHGVVFKLGFDTDVYVGNTLLMLYGNCGF 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVR 219
              A  LFDE+PER++ +WN ++          E    Y  M    V +PN +S   ++ 
Sbjct: 61  LNDARRLFDEMPERDVVSWNTIIGLLSVNGDYTEARNYYFWMILRSVIKPNLVSVISLL- 119

Query: 220 GCSIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
              I   L++    +++H + +K+G +D  +   NALVD Y  CGS+    + F+     
Sbjct: 120 --PISAALEDEEMTRRIHCYSVKVG-LDSQVTTCNALVDAYGKCGSVKALWQVFNETVEK 176

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           + +SWNSI++  A     +DAL  F  M     +P+  +    L           GK+IH
Sbjct: 177 NEVSWNSIINGLACKGRCWDALNAFRMMIDAGAQPNSVTISSILPVLVELECFKAGKEIH 236

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G+  ++G +   + + ++L DMY K      +  +F +   R++   N+++ +   +   
Sbjct: 237 GFSMRMGTE-TDIFIANSLIDMYAKSGHSTEASTIFHNLDRRNIVSWNAMIANYALNRLP 295

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            +A+     M + G   + VT +  L A   +    LG  + +H   ++ G  S++ VS 
Sbjct: 296 LEAIRFVIQMQETGECPNAVTFTNVLPA--CARLGFLGPGKEIHAMGVRIGLTSDLFVSN 353

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+D Y++CG +  +  VF      + V +  ++ GYS      ++L++   M   G  P
Sbjct: 354 SLIDMYAKCGCLHSARNVF-NTSRKDEVSYNILIIGYSETDDCLQSLNLFSEMRLLGKKP 412

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS------CMIDMLGRAGIL 570
           D V+F+ V++ C +   +K+G       K V+G+      YS       ++D   + G +
Sbjct: 413 DVVSFVGVISACANLAALKQG-------KEVHGVALRNHLYSHLFVSNSLLDFYTKCGRI 465

Query: 571 DKAEELLQQ 579
           D A  L  Q
Sbjct: 466 DIACRLFNQ 474



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 89/377 (23%), Positives = 189/377 (50%), Gaps = 4/377 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+     P   TI+++ P    +    +   +  +  +   + +I+ +N  ID + KSGH
Sbjct: 204 MIDAGAQPNSVTISSILPVLVELECFKAGKEIHGFSMRMGTETDIFIANSLIDMYAKSGH 263

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
              A  +F  +  R++V++N +I+     R P +A+    +M   G   +A TF++VL  
Sbjct: 264 STEASTIFHNLDRRNIVSWNAMIANYALNRLPLEAIRFVIQMQETGECPNAVTFTNVLPA 323

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+  GF   G +IH   + +G   +L++ + L+D+Y + G    A ++F+    ++  ++
Sbjct: 324 CARLGFLGPGKEIHAMGVRIGLTSDLFVSNSLIDMYAKCGCLHSARNVFNT-SRKDEVSY 382

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N+++  + E     + L ++++M+  G +P+ +SF  ++  C+    L +GK++H   ++
Sbjct: 383 NILIIGYSETDDCLQSLNLFSEMRLLGKKPDVVSFVGVISACANLAALKQGKEVHGVALR 442

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              +  ++FV+N+L+DFY+ CG +  A + F+ I   DV SWN+++  Y     +  A+ 
Sbjct: 443 -NHLYSHLFVSNSLLDFYTKCGRIDIACRLFNQILFKDVASWNTMILGYGMIGELETAIS 501

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  M+    +  + S++  L+  S  G V  G Q    +     +   +H  + + D+ 
Sbjct: 502 MFEAMRDDTVQYDLVSYIAVLSACSHGGLVERGWQYFSEMLAQRLEPTEMHY-TCMVDLL 560

Query: 360 GKCNVIESSVAVFESAP 376
           G+   +E +  + +  P
Sbjct: 561 GRAGFVEEAAKLIQQLP 577


>gi|218188593|gb|EEC71020.1| hypothetical protein OsI_02714 [Oryza sativa Indica Group]
          Length = 825

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 173/619 (27%), Positives = 326/619 (52%), Gaps = 5/619 (0%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y S+  ++ +V  G ++ A++   + P R  V++N L++   +     + + ++D++V  
Sbjct: 197 YVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVES 256

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G + S  T  +VL  C   G    G  +H  V+  G   +  + + L+++Y +   +  A
Sbjct: 257 GDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETDRVLNNCLIEMYSKCLSAEDA 316

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            ++F  + E ++   +LM+  F       E   ++ +M   GV+PN  +F  +    S  
Sbjct: 317 YEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRT 376

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             ++  + +H+H++K G+      V +A+V  Y   G++ +A  +FD +   D+ SWN++
Sbjct: 377 GDVNLCRSIHAHIVKSGFSRTK-GVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTL 435

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S +   +     L +F  +       +  ++V  L   +   ++ FG Q+H  V K GF
Sbjct: 436 LSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFGCQVHACVLKSGF 495

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
             G   V   L DMY +     ++  VF+    R +     +M++   +   + A+E F 
Sbjct: 496 -QGDYDVSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFR 554

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+ E    ++ TL+T+L     S  A LGS   LH   IKSG+ S++ VS +L+D Y +
Sbjct: 555 SMLRENKRPNDATLATSLSV--CSDLACLGSGLQLHSYTIKSGWNSSV-VSSALVDMYVK 611

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG++  +  +F++  + ++V + +I+ GY+++G G +AL+  + MI  G +PD++TF+ V
Sbjct: 612 CGNLADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGV 671

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+ C+H+G++ EG+  F  + SVYGI    +HY+CM+D+L +AG L +AE L+ + P   
Sbjct: 672 LSACSHAGLLDEGRRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTP 731

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           D  +W ++L +CR+HGN  I  R A  L E +P D +    +SN Y+++  +    ++R 
Sbjct: 732 DASLWKTILGACRMHGNIEIAERAAEKLFESQPDDISSCILLSNIYADLKRWNDVAKLRS 791

Query: 645 TALARKLTRDIGHSLIEVN 663
             + R + ++ G S IE+N
Sbjct: 792 MLVDRGVKKEPGCSWIEIN 810



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 140/569 (24%), Positives = 272/569 (47%), Gaps = 15/569 (2%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           +  P+ + +  +  ++ + K G L  A+ +FD MP RD+V +  ++S          AL 
Sbjct: 88  RSGPRPDAFLHDSLLNMYCKCGRLADARSVFDGMPHRDVVAWTAMVSAITAAGDAGAALR 147

Query: 97  LYDEMVSHGIKESASTFSSVLSVC---SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           L+ EM   G+  +    ++ L  C   S+ GF     Q+H + + L    + Y+ S LV+
Sbjct: 148 LFAEMSEEGVVPNGFALAAALKACTVGSDLGFTP---QVHAQAVKLEGLFDPYVSSSLVE 204

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
            Y+  G    A     + P R+  +WN +L  +       +V+ +++K+   G E +  +
Sbjct: 205 AYVSCGEVDVAERALLDSPVRSDVSWNALLNEYARDGDYAKVMLVFDKLVESGDEISKYT 264

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              +++ C    L   G+ +H  VIK G ++ +  + N L++ YS C S  +A + F  I
Sbjct: 265 LPTVLKCCMELGLAKSGQAVHGLVIKRG-LETDRVLNNCLIEMYSKCLSAEDAYEVFARI 323

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              DV+  + ++S +  +D+  +A ++F +M     +P+  +FV     ASRTG+V   +
Sbjct: 324 DEPDVVHCSLMISCFDRHDMAPEAFDIFMQMSDMGVKPNQYTFVGLAIVASRTGDVNLCR 383

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            IH ++ K GF   +  V  A+  MY K   ++ ++  F+   G  +   N+L++     
Sbjct: 384 SIHAHIVKSGFSR-TKGVCDAIVGMYVKTGAVQDAILAFDLMQGPDIASWNTLLSGFYSG 442

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
            N +  + +F  ++ EG+  ++ T    L+  +       G C+ +H C +KSGF+ +  
Sbjct: 443 NNCEHGLRIFKELICEGVLANKYTYVGILRCCTSLMDLRFG-CQ-VHACVLKSGFQGDYD 500

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           VS  L+D Y + G    +  VF+++   +V  +T +M+ Y++   G +A++    M++  
Sbjct: 501 VSKMLLDMYVQAGCFTNARLVFDRLKERDVFSWTVVMSTYAKTDEGEKAIECFRSMLREN 560

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
             P+  T    L+ C+    +  G QL   ++KS +         S ++DM  + G L  
Sbjct: 561 KRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVVS---SALVDMYVKCGNLAD 617

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           AE L  ++    D + W++++     HG+
Sbjct: 618 AEMLFDES-DTHDLVEWNTIICGYAQHGH 645



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 108/467 (23%), Positives = 218/467 (46%), Gaps = 7/467 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E   ++++ L  C+ +     G  +H R+L  G   + ++   L+++Y + G    A  +
Sbjct: 58  EELRSYAAALQGCAASRALRRGKALHARLLRSGPRPDAFLHDSLLNMYCKCGRLADARSV 117

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD +P R++  W  M+ A          LR++ +M  EGV PNG +    ++ C++G  L
Sbjct: 118 FDGMPHRDVVAWTAMVSAITAAGDAGAALRLFAEMSEEGVVPNGFALAAALKACTVGSDL 177

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
               Q+H+  +KL  +  + +V+++LV+ Y +CG +  A+++    PV   +SWN++++ 
Sbjct: 178 GFTPQVHAQAVKLEGL-FDPYVSSSLVEAYVSCGEVDVAERALLDSPVRSDVSWNALLNE 236

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           YA        + +F ++       S  +    L      G    G+ +HG V K G +  
Sbjct: 237 YARDGDYAKVMLVFDKLVESGDEISKYTLPTVLKCCMELGLAKSGQAVHGLVIKRGLETD 296

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            V + + L +MY KC   E +  VF       +  C+ +++         +A ++F  M 
Sbjct: 297 RV-LNNCLIEMYSKCLSAEDAYEVFARIDEPDVVHCSLMISCFDRHDMAPEAFDIFMQMS 355

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           D G+  ++ T      A+  S + ++  CR +H   +KSGF     V  +++  Y + G 
Sbjct: 356 DMGVKPNQYTFVGL--AIVASRTGDVNLCRSIHAHIVKSGFSRTKGVCDAIVGMYVKTGA 413

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           ++ +   F+ +  P++  + ++++G+         L + + +I  G++ +K T++ +L  
Sbjct: 414 VQDAILAFDLMQGPDIASWNTLLSGFYSGNNCEHGLRIFKELICEGVLANKYTYVGILRC 473

Query: 528 CNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           C     ++ G Q+    +KS  G   D      ++DM  +AG    A
Sbjct: 474 CTSLMDLRFGCQVHACVLKS--GFQGDYDVSKMLLDMYVQAGCFTNA 518



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 65/221 (29%), Positives = 106/221 (47%), Gaps = 6/221 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML     P   T+ T    C+ +  L S L L SY   +   +   S+  +D +VK G+L
Sbjct: 556 MLRENKRPNDATLATSLSVCSDLACLGSGLQLHSYTIKSGWNSSVVSSALVDMYVKCGNL 615

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A+ LFDE    D+V +N +I G  +  H  +AL  + EM+  G      TF  VLS C
Sbjct: 616 ADAEMLFDESDTHDLVEWNTIICGYAQHGHGYKALEAFQEMIDEGNVPDEITFVGVLSAC 675

Query: 121 SNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
           S+AG   EG + + ++LS  +G+   L   + +VD+  + G    A  L +E+P   + +
Sbjct: 676 SHAGLLDEG-RRYFKLLSSVYGITPTLEHYACMVDILAKAGKLAEAESLINEMPLTPDAS 734

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
            W  +L A C +    E+     +   E  +P+ +S C ++
Sbjct: 735 LWKTILGA-CRMHGNIEIAERAAEKLFES-QPDDISSCILL 773


>gi|357153657|ref|XP_003576524.1| PREDICTED: pentatricopeptide repeat-containing protein At1g74600,
           chloroplastic-like [Brachypodium distachyon]
          Length = 809

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 180/614 (29%), Positives = 331/614 (53%), Gaps = 13/614 (2%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P+ +++     ++ + KSG + +A + F  MP R++V++   I+G  +   P  A+ L 
Sbjct: 200 DPEYDVFVGTSIVNMYAKSGDMIAAMREFWRMPIRNVVSWTTAIAGFVQEEEPVSAVRLL 259

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EMV  G+  +  T +S+L  CS      E  Q+H  ++     L+  +   L+  Y  +
Sbjct: 260 REMVRSGVSMNKYTATSILLACSQMYMIREVSQMHGMIMKKELYLDHAVKEALICTYANI 319

Query: 159 GPSVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
           G    +   F+E+    +   W+  +      S P   L++  +M  +G+ PN    CY 
Sbjct: 320 GAIELSETAFEEVGTVSSTRIWSTFISGVSSHSLP-RSLQLLMRMFRQGLRPN--DRCYA 376

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
               S+  + + G+QLHS VIK G+V  ++ V +AL   YS    L ++ + F  +   D
Sbjct: 377 SVFSSMDSI-EFGRQLHSLVIKDGFVH-DVLVGSALSTMYSRGDDLEDSYRVFKEMQERD 434

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +SW ++V+ +A +    +A  LF  M L   +P   +    L+   +   +  GK IHG
Sbjct: 435 EVSWTAMVAGFASHGHSVEAFRLFRIMILDGFKPDYVTLSAILSACDKPECLLKGKTIHG 494

Query: 338 YVTKLGFDHGSV-HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           ++ ++   HG +  +   L  MY KC   +++  +F++ P +     +S+++    +G  
Sbjct: 495 HILRV---HGEITSISHCLVSMYSKCQEAQTARRIFDATPCKDQVMFSSMISGYSTNGCS 551

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            +A+ +F  M+  G  +D    S+ L   +  A    G  +LLH  AIK+G  S+++VS 
Sbjct: 552 AEAMSLFQLMLSTGFQIDRFICSSILSLCADIARPLYG--KLLHGHAIKAGILSDLSVSS 609

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+  YS+ G++  S +VF++I SP++V +T+I++GY+++G GR+AL+M ++MI  G+ P
Sbjct: 610 SLVKLYSKSGNLNDSRKVFDEITSPDLVTWTAIIDGYAQHGSGRDALEMFDLMITLGVKP 669

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D V  + VL+ C+ +G+V+EG   F SM+++YG++    HY CM+D+LGR+G L  A+  
Sbjct: 670 DTVVLVSVLSACSRNGLVEEGVNYFESMRTIYGVEPMLHHYCCMVDLLGRSGRLQDAKSF 729

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           ++  P   D M+WS+L  +CRVH + ++G  V N + E +  D   ++ +SN  +  G++
Sbjct: 730 IESMPMKADLMVWSTLFAACRVHNDAVLGGFVENKIRE-DGYDSGSFATLSNILANSGDW 788

Query: 637 EVSMQIRETALARK 650
           E   ++R++   +K
Sbjct: 789 EEVARVRKSMDVKK 802



 Score =  175 bits (444), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 139/561 (24%), Positives = 267/561 (47%), Gaps = 14/561 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  +  ID   KSG    A K F++      V +N +ISG  +    + A+ ++ +MV
Sbjct: 103 DAYVCSGMIDLLAKSGRFEDALKAFEDGDRGSAVCWNTVISGAVRNDQDRLAIDMFSDMV 162

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               + ++ T+S VLS C+       G  +H  VL      ++++G+ +V++Y + G  +
Sbjct: 163 RGSCEPNSFTYSGVLSACAMGAELCVGRAVHGLVLRRDPEYDVFVGTSIVNMYAKSGDMI 222

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+  F  +P RN+ +W   +  F +   P   +R+  +M   GV  N  +   ++  CS
Sbjct: 223 AAMREFWRMPIRNVVSWTTAIAGFVQEEEPVSAVRLLREMVRSGVSMNKYTATSILLACS 282

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISW 281
              ++ E  Q+H  ++K   + ++  V  AL+  Y+  G++  ++ +F+ +  V     W
Sbjct: 283 QMYMIREVSQMHGMIMKKE-LYLDHAVKEALICTYANIGAIELSETAFEEVGTVSSTRIW 341

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++ +S  + + L   +L+L  RM     RP+ R +       S   ++ FG+Q+H  V K
Sbjct: 342 STFISGVSSHSLP-RSLQLLMRMFRQGLRPNDRCYASVF---SSMDSIEFGRQLHSLVIK 397

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF H  V V SAL+ MY + + +E S  VF+    R      +++      G+  +A  
Sbjct: 398 DGFVH-DVLVGSALSTMYSRGDDLEDSYRVFKEMQERDEVSWTAMVAGFASHGHSVEAFR 456

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M+ +G   D VTLS  L A         G     H   +     S   +S  L+  
Sbjct: 457 LFRIMILDGFKPDYVTLSAILSACDKPECLLKGKTIHGHILRVHGEITS---ISHCLVSM 513

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+C   + + ++F+  P  + V F+S+++GYS NG   EA+ + ++M+  G   D+   
Sbjct: 514 YSKCQEAQTARRIFDATPCKDQVMFSSMISGYSTNGCSAEAMSLFQLMLSTGFQIDRFIC 573

Query: 522 LCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
             +L+ C        G+L+  +++K+  GI +D    S ++ +  ++G L+ + ++  + 
Sbjct: 574 SSILSLCADIARPLYGKLLHGHAIKA--GILSDLSVSSSLVKLYSKSGNLNDSRKVFDEI 631

Query: 581 PGGGDCMMWSSLLRSCRVHGN 601
               D + W++++     HG+
Sbjct: 632 T-SPDLVTWTAIIDGYAQHGS 651



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 123/530 (23%), Positives = 232/530 (43%), Gaps = 36/530 (6%)

Query: 87  KFRHPKQALYLYDEMVSH------GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140
           + RHP     L   + S       G   S   F   L+ C   G      Q++C     G
Sbjct: 40  EVRHPDHLRRLPSALASFVLSRAVGNTPSHLDFGKALAACVGPGHVAFAEQVYCVAWKDG 99

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
              + Y+ S ++DL  + G    AL  F++    +   WN ++       +    + M++
Sbjct: 100 LTGDAYVCSGMIDLLAKSGRFEDALKAFEDGDRGSAVCWNTVISGAVRNDQDRLAIDMFS 159

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
            M     EPN  ++  ++  C++G  L  G+ +H  V++    + ++FV  ++V+ Y+  
Sbjct: 160 DMVRGSCEPNSFTYSGVLSACAMGAELCVGRAVHGLVLRRD-PEYDVFVGTSIVNMYAKS 218

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
           G +I A + F  +P+ +V+SW + ++ +   +    A+ L         R  +RS V   
Sbjct: 219 GDMIAAMREFWRMPIRNVVSWTTAIAGFVQEEEPVSAVRLL--------REMVRSGVSMN 270

Query: 321 NFASRT-----GNVYFGK---QIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIESSVA 370
            + + +       +Y  +   Q+HG + K  L  DH    V+ AL   Y     IE S  
Sbjct: 271 KYTATSILLACSQMYMIREVSQMHGMIMKKELYLDHA---VKEALICTYANIGAIELSET 327

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
            FE     S     S   S + S ++  ++++   M  +G+  ++   ++   ++    S
Sbjct: 328 AFEEVGTVSSTRIWSTFISGVSSHSLPRSLQLLMRMFRQGLRPNDRCYASVFSSMD---S 384

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
              G  R LH   IK GF  ++ V  +L   YSR   +E S++VF+++   + V +T+++
Sbjct: 385 IEFG--RQLHSLVIKDGFVHDVLVGSALSTMYSRGDDLEDSYRVFKEMQERDEVSWTAMV 442

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            G++ +G   EA  +  +MI  G  PD VT   +L+ C+    + +G+ +   +  V+G 
Sbjct: 443 AGFASHGHSVEAFRLFRIMILDGFKPDYVTLSAILSACDKPECLLKGKTIHGHILRVHGE 502

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
                H  C++ M  +      A  +   TP   D +M+SS++     +G
Sbjct: 503 ITSISH--CLVSMYSKCQEAQTARRIFDATP-CKDQVMFSSMISGYSTNG 549


>gi|224121748|ref|XP_002330643.1| predicted protein [Populus trichocarpa]
 gi|222872247|gb|EEF09378.1| predicted protein [Populus trichocarpa]
          Length = 777

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 170/585 (29%), Positives = 312/585 (53%), Gaps = 16/585 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  +     F + G  + A+K+F++M AR+ V+ N L+ G  + +  ++A+ ++ E  
Sbjct: 185 NLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAVEVFKE-T 243

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFG-LNLYIGSPLVDLYMR 157
            H +  +  ++  +LS C+      EG     ++H   +  G     + +G+ L+++Y +
Sbjct: 244 RHLVDINVDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNGLINMYAK 303

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +F  + +++  +WN M+    +    ++ ++ YN M+  G+ P+  +    
Sbjct: 304 CGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISA 363

Query: 218 VRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +  C S+G +L  G+Q H   IKLG +D+++ V+N L+  Y+  G L E +K F ++   
Sbjct: 364 LSSCASLGCIL-LGQQTHGEGIKLG-LDMDVSVSNTLLALYAETGHLAECQKVFSWMLER 421

Query: 277 DVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           D +SWN+++   AD    + +A+E+F  M      P+  +F+  L   S         QI
Sbjct: 422 DQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVSSLSTSKLSHQI 481

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHSG 394
           H  + K      +  +++AL   YGK   +E+   +F     R  E   NS+++  +H+ 
Sbjct: 482 HALILKYNVKDDNA-IENALLACYGKSGEMENCEEIFSRMSERRDEVSWNSMISGYIHND 540

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
            +  A+++   M+  G  LD  T +T L A +  A+   G    +H CAI++  ES++ +
Sbjct: 541 LLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLERG--MEVHACAIRACLESDVVI 598

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+D YS+CG I+ + + F  +P  N+  + S+++GY+R+G G  AL +   M   G 
Sbjct: 599 GSALVDMYSKCGRIDYASRFFNLMPMRNLYSWNSMISGYARHGYGDNALRLFTRMKLSGQ 658

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           +PD +TF+ VL+ C+H G+V EG   F SM  VYG+    +HYSCM+D+LGRAG LDK +
Sbjct: 659 LPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYSCMVDLLGRAGELDKID 718

Query: 575 ELLQQTPGGGDCMMWSSLLRS-CRVHGNEI-IGRRVANILMELEP 617
             + + P   + ++W ++L + CR +G +  +GRR A +L  ++P
Sbjct: 719 NFINKMPIKPNILIWRTVLGACCRGNGRKTELGRRAAEMLFNMDP 763



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 138/557 (24%), Positives = 269/557 (48%), Gaps = 22/557 (3%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD--EMVSHGI--KESASTF 113
           G+++ A+ +FDE+  R+ + +N ++S   +         L+   +M   G+  K +  TF
Sbjct: 93  GYIDYARSVFDEIEIRNSIYWNSIVSVYSQRGDAASCFELFSSMQMADSGLSLKPNEYTF 152

Query: 114 SSVLSV-CS--NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            S+++  CS  ++G    G QI  R+   G   NLY+GS L   + R+G    A  +F++
Sbjct: 153 GSLITAACSSVDSGLSLLG-QILARIKKSGLLANLYVGSALAGGFSRLGSFDYARKIFEQ 211

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE- 229
           +  RN  + N ++         +E + ++ + +   V+ N  S+  ++  C+   LLDE 
Sbjct: 212 MTARNAVSMNGLMVGLVRQKCGEEAVEVFKETR-HLVDINVDSYVILLSACAEFALLDEG 270

Query: 230 ---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
              G+++H + I+ G  D  + V N L++ Y+ CG +  A+  F  +   D +SWNS+++
Sbjct: 271 RRKGREVHGYAIRTGLNDAKVAVGNGLINMYAKCGDIDHARSVFGLMVDKDSVSWNSMIT 330

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
                    DA++ +  M+     PS  + +  L+  +  G +  G+Q HG   KLG D 
Sbjct: 331 GLDQNKCFEDAVKSYNSMRKTGLMPSNFTLISALSSCASLGCILLGQQTHGEGIKLGLDM 390

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG-NIKDAVEMFGF 405
             V V + L  +Y +   +     VF     R     N+++ +L  SG ++ +A+E+F  
Sbjct: 391 -DVSVSNTLLALYAETGHLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLE 449

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M+  G   + VT    L  +S  +++ L     +H   +K   + + A+  +L+  Y + 
Sbjct: 450 MMRAGWSPNRVTFINLLATVSSLSTSKLS--HQIHALILKYNVKDDNAIENALLACYGKS 507

Query: 466 GHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           G +E   ++F ++    + V + S+++GY  N +  +A+D++ +M+QRG   D  TF  V
Sbjct: 508 GEMENCEEIFSRMSERRDEVSWNSMISGYIHNDLLCKAMDLVWLMMQRGQRLDCFTFATV 567

Query: 525 LAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           L+ C     ++ G  V   ++++   +++D    S ++DM  + G +D A       P  
Sbjct: 568 LSACATVATLERGMEVHACAIRAC--LESDVVIGSALVDMYSKCGRIDYASRFFNLMP-M 624

Query: 584 GDCMMWSSLLRSCRVHG 600
            +   W+S++     HG
Sbjct: 625 RNLYSWNSMISGYARHG 641



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 146/620 (23%), Positives = 290/620 (46%), Gaps = 38/620 (6%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF--YT 127
           MP R+ VT+  LISG  +   P  A  +  EM+  G   +   F S +  C  +      
Sbjct: 1   MPDRNGVTWACLISGYTQNGMPDDACGVLKEMIFEGFLPNRFAFGSAIRACQESMLCGLQ 60

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMR-MGPSVRALDLFDELPERNLATWNLMLRAF 186
            G+QIH  +L   +  +  + + L+ +Y + +G    A  +FDE+  RN   WN ++  +
Sbjct: 61  LGMQIHGLILKSPYANDASLCNVLISMYGKYLGYIDYARSVFDEIEIRNSIYWNSIVSVY 120

Query: 187 CELSRPDEVLRMYNKMKAE----GVEPNGLSFCYMVR-GCSIGMLLDEGKQLHSHV---I 238
            +         +++ M+       ++PN  +F  ++   CS    +D G  L   +   I
Sbjct: 121 SQRGDAASCFELFSSMQMADSGLSLKPNEYTFGSLITAACSS---VDSGLSLLGQILARI 177

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K   +  N++V +AL   +S  GS   A+K F+ +   + +S N ++          +A+
Sbjct: 178 KKSGLLANLYVGSALAGGFSRLGSFDYARKIFEQMTARNAVSMNGLMVGLVRQKCGEEAV 237

Query: 299 ELFFRMQLCRKRPSIRSFVEFLN----FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
           E+F   +      ++ S+V  L+    FA        G+++HGY  + G +   V V + 
Sbjct: 238 EVFKETRHLVD-INVDSYVILLSACAEFALLDEGRRKGREVHGYAIRTGLNDAKVAVGNG 296

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L +MY KC  I+ + +VF     +     NS++T L  +   +DAV+ +  M   G+   
Sbjct: 297 LINMYAKCGDIDHARSVFGLMVDKDSVSWNSMITGLDQNKCFEDAVKSYNSMRKTGLMPS 356

Query: 415 EVTLSTTLKALSVSASANLGSCRLL----HCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
             TL + L     S+ A+LG C LL    H   IK G + +++VS +L+  Y+  GH+  
Sbjct: 357 NFTLISAL-----SSCASLG-CILLGQQTHGEGIKLGLDMDVSVSNTLLALYAETGHLAE 410

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMG-REALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
             +VF  +   + V + +++   + +G    EA+++   M++ G  P++VTF+ +LA  +
Sbjct: 411 CQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFINLLATVS 470

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
                K    + +++   Y +  D    + ++   G++G ++  EE+  +     D + W
Sbjct: 471 SLSTSKLSHQI-HALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSERRDEVSW 529

Query: 590 SSLLRSCRVHGNEIIGRRVANILMEL---EPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
           +S++ S  +H N+++ + +  + + +   + +D   ++ V +  + +   E  M++   A
Sbjct: 530 NSMI-SGYIH-NDLLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLERGMEVHACA 587

Query: 647 LARKLTRD--IGHSLIEVNS 664
           +   L  D  IG +L+++ S
Sbjct: 588 IRACLESDVVIGSALVDMYS 607



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/373 (24%), Positives = 173/373 (46%), Gaps = 12/373 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-----QLNIYSSNRTIDDFV 55
           M  T L+P   T+ +   +C S+      +LL              +++  SN  +  + 
Sbjct: 348 MRKTGLMPSNFTLISALSSCASL----GCILLGQQTHGEGIKLGLDMDVSVSNTLLALYA 403

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP-KQALYLYDEMVSHGIKESASTFS 114
           ++GHL   +K+F  M  RD V++N +I           +A+ ++ EM+  G   +  TF 
Sbjct: 404 ETGHLAECQKVFSWMLERDQVSWNTVIGALADSGASVSEAIEVFLEMMRAGWSPNRVTFI 463

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE- 173
           ++L+  S+        QIH  +L      +  I + L+  Y + G      ++F  + E 
Sbjct: 464 NLLATVSSLSTSKLSHQIHALILKYNVKDDNAIENALLACYGKSGEMENCEEIFSRMSER 523

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+  +WN M+  +       + + +   M   G   +  +F  ++  C+    L+ G ++
Sbjct: 524 RDEVSWNSMISGYIHNDLLCKAMDLVWLMMQRGQRLDCFTFATVLSACATVATLERGMEV 583

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+  I+   ++ ++ + +ALVD YS CG +  A + F+ +P+ ++ SWNS++S YA +  
Sbjct: 584 HACAIR-ACLESDVVIGSALVDMYSKCGRIDYASRFFNLMPMRNLYSWNSMISGYARHGY 642

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +AL LF RM+L  + P   +FV  L+  S  G V  G +    +T++      V   S
Sbjct: 643 GDNALRLFTRMKLSGQLPDHITFVGVLSACSHIGLVDEGFEYFKSMTEVYGLVPRVEHYS 702

Query: 354 ALTDMYGKCNVIE 366
            + D+ G+   ++
Sbjct: 703 CMVDLLGRAGELD 715


>gi|147769567|emb|CAN65709.1| hypothetical protein VITISV_020733 [Vitis vinifera]
          Length = 609

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 167/570 (29%), Positives = 299/570 (52%), Gaps = 6/570 (1%)

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
           +  +AL L+ +M  +G++ +  TF SV   CS          +H  V+   F  +L++ +
Sbjct: 34  YAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQT 93

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
            +VD+Y++      A +LF  +P R++A+WN M+  F +L   D V+ ++ +M  EG+  
Sbjct: 94  SVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRA 153

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           + ++   +         L   + +HS  IK+G +D ++ V+N  +  Y+ CG    A+  
Sbjct: 154 DSVTVIGLTHSALSLKDLKMLESIHSFGIKIG-IDTDVSVSNTWIAAYAKCGEFGLAETV 212

Query: 270 FDFIP--VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
           FD I   +   +SWNS+++ YA ++    A+  F +M     R  + + +  L+   +  
Sbjct: 213 FDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQPE 272

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
            ++ GK IH +  ++G D   + V + L  MY KC  I S+  +F++  G++     +++
Sbjct: 273 VLFHGKLIHAHGIQVGCD-SDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMI 331

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
                 G++ +A+ +F  M   G   D VT+ + +     + +  LG  + +   A  +G
Sbjct: 332 AGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELG--KWIDTYATANG 389

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            + N+ V  +L+D Y++CG ++ + ++F  +P  ++V +T+++ G + NG  +EAL +  
Sbjct: 390 LKDNLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFF 449

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            M++ GL P+ +TFL VL  CNH+G +++G   FN M  VY I+    HYSCM D+LGR 
Sbjct: 450 QMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMTKVYKINPGLDHYSCMADLLGRK 509

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G L +A E +Q  P   D  +WS LL +C++H N +IG  VA  L ELEP     Y Q++
Sbjct: 510 GRLKEAFEFIQNMPFKPDVGIWSVLLSACKIHQNVVIGECVAYHLFELEPQTAVPYVQMA 569

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           N Y+  G+++    IR      K  +  G 
Sbjct: 570 NIYASAGKWDRVAAIRTMMKCNKAMKSSGE 599



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 112/447 (25%), Positives = 206/447 (46%), Gaps = 10/447 (2%)

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
            +A WN  +          + L ++ +MK  G+EPN L+F  + + CS  + L   + +H
Sbjct: 18  TVAQWNSSITESVNQGYAHKALLLFRQMKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVH 77

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           +HV+K  +   ++FV  ++VD Y  C  L  A   F  +P  DV SWNS++  +A    +
Sbjct: 78  THVVKSRF-QADLFVQTSVVDMYVKCSQLGFAYNLFSRMPXRDVASWNSMIXGFAQLGFV 136

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
              + LF  M +   R    + +   + A    ++   + IH +  K+G D   V V + 
Sbjct: 137 DRVVSLFCEMGIEGIRADSVTVIGLTHSALSLKDLKMLESIHSFGIKIGIDT-DVSVSNT 195

Query: 355 LTDMYGKCNVIESSVAVFESAPG--RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
               Y KC     +  VF+      ++    NS++    H      AV  F  M+  G  
Sbjct: 196 WIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKKMLXGGFR 255

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D  T+ + L +         G  +L+H   I+ G +S+I V  +L+  YS+CG I  + 
Sbjct: 256 ADLSTILSLLSSCVQPEVLFHG--KLIHAHGIQVGCDSDIQVINTLISMYSKCGDIGSAR 313

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            +F+ +     V +T+++ G +  G   EA+ +   M   G  PD VT + +++GC  +G
Sbjct: 314 YLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSGCGQTG 373

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            ++ G+ + ++  +  G+  +    + +ID+  + G +D A EL    P     + W++L
Sbjct: 374 ALELGKWI-DTYATANGLKDNLMVCNALIDVYAKCGSMDNARELFYTMP-EKSLVSWTTL 431

Query: 593 LRSCRVHG--NEIIGRRVANILMELEP 617
           +  C ++G   E +G     + + L+P
Sbjct: 432 IAGCALNGEFKEALGLFFQMVELGLKP 458



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 202/427 (47%), Gaps = 5/427 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M    L P   T  ++A  C+ ++ L  S ++ ++  +   Q +++     +D +VK   
Sbjct: 45  MKQNGLEPNNLTFPSVAKACSKLLNLKYSQIVHTHVVKSRFQADLFVQTSVVDMYVKCSQ 104

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A  LF  MP RD+ ++N +I G  +     + + L+ EM   GI+  + T   +   
Sbjct: 105 LGFAYNLFSRMPXRDVASWNSMIXGFAQLGFVDRVVSLFCEMGIEGIRADSVTVIGLTHS 164

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLA 177
             +         IH   + +G   ++ + +  +  Y + G    A  +FD + +  +   
Sbjct: 165 ALSLKDLKMLESIHSFGIKIGIDTDVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXV 224

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN M+  +    +  + +  + KM   G   +  +   ++  C    +L  GK +H+H 
Sbjct: 225 SWNSMIAGYAHFEQCSKAVGFFKKMLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHG 284

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           I++G  D +I V N L+  YS CG +  A+  FD +     +SW ++++  A+   + +A
Sbjct: 285 IQVG-CDSDIQVINTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEA 343

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           + LF  M+   ++P + + +  ++   +TG +  GK I  Y T  G    ++ V +AL D
Sbjct: 344 MTLFSAMEAVGEKPDLVTIISLMSGCGQTGALELGKWIDTYATANGLKD-NLMVCNALID 402

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           +Y KC  ++++  +F + P +SL    +L+     +G  K+A+ +F  MV+ G+  + +T
Sbjct: 403 VYAKCGSMDNARELFYTMPEKSLVSWTTLIAGCALNGEFKEALGLFFQMVELGLKPNHIT 462

Query: 418 LSTTLKA 424
               L+A
Sbjct: 463 FLAVLQA 469



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 163/341 (47%), Gaps = 13/341 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++  SN  I  + K G    A+ +FD +    +  V++N +I+G   F    +A+  + +
Sbjct: 189 DVSVSNTWIAAYAKCGEFGLAETVFDGIDKGLKTXVSWNSMIAGYAHFEQCSKAVGFFKK 248

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  G +   ST  S+LS C        G  IH   + +G   ++ + + L+ +Y + G 
Sbjct: 249 MLXGGFRADLSTILSLLSSCVQPEVLFHGKLIHAHGIQVGCDSDIQVINTLISMYSKCGD 308

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD +  +   +W  M+    E    DE + +++ M+A G +P+ ++   ++ G
Sbjct: 309 IGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEKPDLVTIISLMSG 368

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C     L+ GK + ++    G  D N+ V NAL+D Y+ CGS+  A++ F  +P   ++S
Sbjct: 369 CGQTGALELGKWIDTYATANGLKD-NLMVCNALIDVYAKCGSMDNARELFYTMPEKSLVS 427

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W ++++  A      +AL LFF+M     +P+  +F+  L   +  G +  G +    +T
Sbjct: 428 WTTLIAGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGFLEKGWECFNLMT 487

Query: 341 KL-----GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           K+     G DH      S + D+ G+   ++ +    ++ P
Sbjct: 488 KVYKINPGLDH-----YSCMADLLGRKGRLKEAFEFIQNMP 523



 Score = 89.0 bits (219), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 67/248 (27%), Positives = 122/248 (49%), Gaps = 17/248 (6%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + K G + SA+ LFD M  +  V++  +I+G  +     +A+ L+  M + G K
Sbjct: 297 NTLISMYSKCGDIGSARYLFDNMLGKTRVSWTAMIAGXAEKGDLDEAMTLFSAMEAVGEK 356

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               T  S++S C   G    G  I     + G   NL + + L+D+Y + G    A +L
Sbjct: 357 PDLVTIISLMSGCGQTGALELGKWIDTYATANGLKDNLMVCNALIDVYAKCGSMDNAREL 416

Query: 168 FDELPERNLATWNLMLRAFCELSRP-DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           F  +PE++L +W  ++ A C L+    E L ++ +M   G++PN ++F  +++ C+    
Sbjct: 417 FYTMPEKSLVSWTTLI-AGCALNGEFKEALGLFFQMVELGLKPNHITFLAVLQACNHAGF 475

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI----EAKKSFDFI---PVD-DV 278
           L++G +  + + K       ++  N  +D YS    L+      K++F+FI   P   DV
Sbjct: 476 LEKGWECFNLMTK-------VYKINPGLDHYSCMADLLGRKGRLKEAFEFIQNMPFKPDV 528

Query: 279 ISWNSIVS 286
             W+ ++S
Sbjct: 529 GIWSVLLS 536


>gi|347954526|gb|AEP33763.1| organelle transcript processing 82, partial [Isatis tinctoria]
          Length = 671

 Score =  280 bits (716), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 160/534 (29%), Positives = 287/534 (53%), Gaps = 37/534 (6%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F+ + E N   WN M+R     S P   L +Y  M + G+ PN  +F ++++ C+ 
Sbjct: 17  ATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAK 76

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY-------------------------- 257
                EG+Q+H  V+KLG+ D++++V  +L+  Y                          
Sbjct: 77  SKTFTEGQQIHGQVLKLGF-DLDLYVHTSLISMYVQNWRLEDAYKVFDRSSHRDVVSYTA 135

Query: 258 -----SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
                ++ G +  A+K FD IPV DV+SWN+++S YA+     +ALELF  M     RP 
Sbjct: 136 LITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVRPD 195

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             ++V  L+  + +G++  G+Q+H +V   GFD  ++ + +AL D+Y KC  +E++  +F
Sbjct: 196 ESTYVTVLSACAHSGSIELGRQVHSWVDDHGFD-SNLKIVNALIDLYSKCGEVETACGLF 254

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           +    + +   N+L+    H    K+A+ +F  M+  G   ++VT+ + L A +   + +
Sbjct: 255 QGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACAHLGAID 314

Query: 433 LGSCRLLHCCAIK--SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           +G  R +H    K   G  +  ++  SL+D Y++CG IE +HQVF  +   ++  + +++
Sbjct: 315 IG--RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSWNAMI 372

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            G++ +G    + D+   M + G+ PD +TF+ +L+ C+HSGM+  G+ +F SM   Y +
Sbjct: 373 FGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQDYKM 432

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
               +HY CMID+LG +G+  +AEE++       D ++W SLL++C++HGN  +    A 
Sbjct: 433 TPKLEHYGCMIDLLGHSGLFKEAEEMINTMEMEPDGVIWCSLLKACKMHGNVELAESFAQ 492

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            L+++EP + + Y  +SN Y+  G +E   +IR     + + +  G S IEV+S
Sbjct: 493 NLIKIEPENPSSYILLSNIYASAGRWEDVARIRALLNGKCMKKVPGCSSIEVDS 546



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 138/517 (26%), Positives = 236/517 (45%), Gaps = 73/517 (14%)

Query: 55  VKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           V S H +    A  +F+ +   + + +N +I G      P  +L LY  MVS G+  ++ 
Sbjct: 6   VPSPHFDGLPYATSVFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSY 65

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM---RMGPSVRALD-- 166
           TF  +L  C+ +  +TEG QIH +VL LGF L+LY+ + L+ +Y+   R+  + +  D  
Sbjct: 66  TFPFLLKSCAKSKTFTEGQQIHGQVLKLGFDLDLYVHTSLISMYVQNWRLEDAYKVFDRS 125

Query: 167 --------------------------LFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
                                     LFDE+P +++ +WN M+  + E     E L ++ 
Sbjct: 126 SHRDVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFE 185

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M    V P+  ++  ++  C+    ++ G+Q+HS V   G+ D N+ + NAL+D YS C
Sbjct: 186 EMMKMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGF-DSNLKIVNALIDLYSKC 244

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
           G +  A   F  +   DVISWN+++  Y   +L  +AL LF  M    + P+  + +  L
Sbjct: 245 GEVETACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVL 304

Query: 321 NFASRTGNVYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
              +  G +  G+ IH Y+ K   G  + S  ++++L DMY KC  IE++  VF S   +
Sbjct: 305 PACAHLGAIDIGRWIHVYIDKRLKGVTNAS-SLRTSLIDMYAKCGDIEAAHQVFNSMLHK 363

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           SL   N+++      G    + ++F  M   GI  D++T    L A S S   +LG    
Sbjct: 364 SLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGR--- 420

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
                                       HI  S     K+ +P +  +  +++    +G+
Sbjct: 421 ----------------------------HIFRSMTQDYKM-TPKLEHYGCMIDLLGHSGL 451

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
            +EA +M+  M    + PD V +  +L  C   G V+
Sbjct: 452 FKEAEEMINTM---EMEPDGVIWCSLLKACKMHGNVE 485



 Score =  145 bits (367), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 87/300 (29%), Positives = 160/300 (53%), Gaps = 1/300 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G + SA+KLFDE+P +D+V++N +ISG  +    K+AL L++EM+
Sbjct: 129 DVVSYTALITGYASRGDIRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMM 188

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++   ST+ +VLS C+++G    G Q+H  V   GF  NL I + L+DLY + G   
Sbjct: 189 KMNVRPDESTYVTVLSACAHSGSIELGRQVHSWVDDHGFDSNLKIVNALIDLYSKCGEVE 248

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 249 TACGLFQGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSVLPACA 308

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++ K L  V     +  +L+D Y+ CG +  A + F+ +    + SW
Sbjct: 309 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMLHKSLSSW 368

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +     + +LF RM+     P   +FV  L+  S +G +  G+ I   +T+
Sbjct: 369 NAMIFGFAMHGRADASFDLFSRMRKIGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTQ 428



 Score = 51.2 bits (121), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 42/193 (21%), Positives = 92/193 (47%), Gaps = 7/193 (3%)

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VFE I  PN + + +++ G++ +     +L +   M+  GL+P+  TF  +L  C  S  
Sbjct: 20  VFETIQEPNQLIWNTMIRGHALSSDPVSSLTLYVCMVSLGLLPNSYTFPFLLKSCAKSKT 79

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             EGQ +   +  + G D D   ++ +I M  +   L+ A ++  ++    D + +++L+
Sbjct: 80  FTEGQQIHGQVLKL-GFDLDLYVHTSLISMYVQNWRLEDAYKVFDRS-SHRDVVSYTALI 137

Query: 594 RSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
                 G+     R A  L +  PV D   ++ + + Y+E G ++ ++++ E  +   + 
Sbjct: 138 TGYASRGD----IRSAQKLFDEIPVKDVVSWNAMISGYAETGCYKEALELFEEMMKMNVR 193

Query: 653 RDIGHSLIEVNSC 665
            D    +  +++C
Sbjct: 194 PDESTYVTVLSAC 206


>gi|357481329|ref|XP_003610950.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355512285|gb|AES93908.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 831

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 178/631 (28%), Positives = 311/631 (49%), Gaps = 51/631 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NIY SN  +  + K G    A ++F+ +   + VT+  ++ G  +    K+ L L+  M+
Sbjct: 172 NIYVSNALLCMYTKCGLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLML 231

Query: 103 SHGIKESASTFSSVLSVCSNA----------GFYT--EGIQIHCRVLSLGFGLNLYIGSP 150
             GI   + + S++L +C+            G  T  +G QIH   +  GF  +L++ + 
Sbjct: 232 RKGICVDSVSLSTILVICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGFERDLHLCNS 291

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           L+D+Y + G    A ++F+ L + ++ +WN+M+  +      ++ L  + +M+  G EP+
Sbjct: 292 LLDMYAKTGDMDSAENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPD 351

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
            +++  M+  C                +K G V V                     ++ F
Sbjct: 352 DVTYINMLTAC----------------VKSGDVKV--------------------GRQIF 375

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +    +ISWN+I+S Y       +A+ELF +MQ   + P   +    L+  +  G + 
Sbjct: 376 DCMSSPSLISWNAILSGYNQSADHGEAVELFRKMQFQWQNPDRTTLAIILSSCAELGLLE 435

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            GKQ+H    KLGF +  V+V S+L ++Y KC  +E S  VF       + C NS++   
Sbjct: 436 AGKQVHAVSQKLGF-YDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGF 494

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
             +   +DA+  F  M   G    E + +T   A S +  ++L   + +H   IK G+  
Sbjct: 495 SINSLEQDALACFKRMRQFGFFPSEFSFATI--ASSCAKLSSLFQGQQIHAQIIKDGYVD 552

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           N+ V  SL++ Y +CG +  +   F+ +P  N+V +  +++GY+ NG G EA+ + + MI
Sbjct: 553 NVFVGSSLVEMYCKCGDVGAARYYFDMMPGKNIVTWNEMIHGYAHNGYGLEAVSLYKDMI 612

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  PD +TF+ VL  C+HS +V EG  +F+SM   + +     HY+C+ID LGR G  
Sbjct: 613 SSGEKPDDITFVAVLTACSHSALVDEGVEIFSSMLQKFEVVPKLDHYTCIIDCLGRVGRF 672

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           ++ E +L   P   D ++W  +L SCRVH N  + +R A  L  L P + A Y  ++N Y
Sbjct: 673 NEVEVILDTMPYKDDTIVWEVVLSSCRVHANVSLAKRAAEELHRLNPRNSAPYVLLANMY 732

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           S +G ++ +  +R+     ++ +D G+S  E
Sbjct: 733 SSMGRWDDAQVVRDLMSDNQIHKDPGYSRSE 763



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 152/571 (26%), Positives = 274/571 (47%), Gaps = 60/571 (10%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  NI+S N  +  F KS +L  A +LF +MP R+ V+ N +I+   K  + +QAL  YD
Sbjct: 67  PHKNIFSYNAILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYD 126

Query: 100 -EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             MV   +K S  TF++V S C        G + H  VL +GF  N+Y+ + L+ +Y + 
Sbjct: 127 LMMVYESVKPSHITFATVFSACGGLKDVNCGRRNHGLVLKVGFDSNIYVSNALLCMYTKC 186

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G +  A  +F+ + E N  T+  M+    + ++  E L ++  M  +G+  + +S   ++
Sbjct: 187 GLNEDAFRVFEGIVEPNEVTFTTMMGGLSQTNQVKEGLELFRLMLRKGICVDSVSLSTIL 246

Query: 219 ----RGCSIGMLLD--------EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
               +G S G+  D        +GKQ+H+  +K G+ + ++ + N+L+D Y+  G +  A
Sbjct: 247 VICAKGVSFGVCDDSRGLSTNAQGKQIHTLAVKHGF-ERDLHLCNSLLDMYAKTGDMDSA 305

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           +  F+ +    V+SWN ++S Y +      ALE F RMQ C   P   +++  L    ++
Sbjct: 306 ENVFENLDKHSVVSWNIMISGYGNRCDSEKALECFQRMQCCGYEPDDVTYINMLTACVKS 365

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G+V  G+QI                                    F+     SL   N++
Sbjct: 366 GDVKVGRQI------------------------------------FDCMSSPSLISWNAI 389

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCA 443
           ++    S +  +AVE+F  M  +    D  TL     A+ +S+ A LG   + + +H  +
Sbjct: 390 LSGYNQSADHGEAVELFRKMQFQWQNPDRTTL-----AIILSSCAELGLLEAGKQVHAVS 444

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
            K GF  ++ V+ SL++ YS+CG +E+S  VF K+   +VVC+ S++ G+S N + ++AL
Sbjct: 445 QKLGFYDDVYVASSLINVYSKCGKMEVSKHVFSKLSELDVVCWNSMIAGFSINSLEQDAL 504

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
              + M Q G  P + +F  + + C     + +GQ +   +     +D +    S +++M
Sbjct: 505 ACFKRMRQFGFFPSEFSFATIASSCAKLSSLFQGQQIHAQIIKDGYVD-NVFVGSSLVEM 563

Query: 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
             + G +  A       P G + + W+ ++ 
Sbjct: 564 YCKCGDVGAARYYFDMMP-GKNIVTWNEMIH 593



 Score = 50.1 bits (118), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 30/132 (22%), Positives = 56/132 (42%), Gaps = 32/132 (24%)

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            + +L S +++H    +    S+  +   L+D YS+C  I  +H VF+KIP  N+  + +
Sbjct: 17  TNKSLSSAKIIHARIFRFTLFSDTFLCNHLIDLYSKCNQITSAHHVFDKIPHKNIFSYNA 76

Query: 489 IMNGYS-------------------------------RNGMGREALDMLEV-MIQRGLIP 516
           I++ +                                +NG  R+ALD  ++ M+   + P
Sbjct: 77  ILSAFCKSNNLQYACRLFLQMPERNTVSLNTIITTMVKNGYERQALDTYDLMMVYESVKP 136

Query: 517 DKVTFLCVLAGC 528
             +TF  V + C
Sbjct: 137 SHITFATVFSAC 148


>gi|347954516|gb|AEP33758.1| organelle transcript processing 82, partial [Barbarea verna]
          Length = 710

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 167/572 (29%), Positives = 297/572 (51%), Gaps = 46/572 (8%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR----ALDLFDELPERNLATWNLMLRAFC 187
           IH +++  G     Y  S L++  + + P+      A+ +F+ + E NL  WN M R   
Sbjct: 21  IHAQMIKTGLHNTNYALSRLLEFCI-LSPNFDGLPYAISVFETIQEPNLLIWNTMFRGHA 79

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG------ 241
             S P   +++Y  M + G+ PN  +F ++++ C+   +  EG+Q+H HV+KLG      
Sbjct: 80  LSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKSCAKLKVSKEGQQIHGHVLKLGYELDLY 139

Query: 242 --------------WVDV----------NIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
                         W D           ++    AL+  Y++ G +  A+K FD IPV D
Sbjct: 140 VHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSYTALITGYASRGYIESAQKMFDEIPVKD 199

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V+SWN+I+S YAD     +AL+LF  M     +P   + V  ++  +++G++  G+Q+H 
Sbjct: 200 VVSWNAIISGYADTGNNKEALDLFKEMMKTNVKPDESTMVTVVSACAQSGSIQLGRQVHS 259

Query: 338 YVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           ++     DHG   ++ + +AL D+Y KC  +E++  +F+    + +   N+++    H  
Sbjct: 260 WID----DHGLGSNLKIVNALIDLYSKCGEVETACGLFQGLSNKDVISWNTMIGGYTHLN 315

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNI 452
             K+A+ +F  M+  G   ++VT+ + L A +   + + G  R +H    K   G  +  
Sbjct: 316 LYKEALLLFQEMLRSGENPNDVTMLSILPACAQLGAIDFG--RWIHVYIDKRIKGVTNAS 373

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           ++  SL+D Y++CG IE +HQVF  +    +    +++ G++ +G    A D+   M + 
Sbjct: 374 SLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSACNAMIFGFAMHGRANAAFDIFSRMRKN 433

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD +TF+ +L+ C+HSGM+  G+ +F SM   Y I    +HY CMID+LG  G+  +
Sbjct: 434 GIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQNYKITPKLEHYGCMIDLLGHLGLFKE 493

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           AEE++       D ++W SLL++C++HGN  +G   A  L+++EP +   Y  +SN Y+ 
Sbjct: 494 AEEMINTMTMEPDGVIWCSLLKACKMHGNVELGESFAQKLIKIEPENPGSYVLLSNIYAT 553

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            G +     IR     + + +  G S IE++S
Sbjct: 554 AGRWNEVANIRALLNDKGMKKVPGCSSIEIDS 585



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 138/527 (26%), Positives = 234/527 (44%), Gaps = 79/527 (14%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A  +F+ +   +++ +N +  G      P  A+ LY  M+S G+  ++ TF  +L  
Sbjct: 53  LPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSAIKLYVCMISLGLLPNSYTFPFLLKS 112

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM-----------GPSVR----- 163
           C+      EG QIH  VL LG+ L+LY+ + L+ +Y++            G S R     
Sbjct: 113 CAKLKVSKEGQQIHGHVLKLGYELDLYVHTSLISMYVKNGRWKDAHKVFDGSSHRDVVSY 172

Query: 164 ---------------ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
                          A  +FDE+P +++ +WN ++  + +     E L ++ +M    V+
Sbjct: 173 TALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMMKTNVK 232

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----VNIFVANALVDFYSACGSL 263
           P+  +   +V  C+    +  G+Q+HS      W+D      N+ + NAL+D YS CG +
Sbjct: 233 PDESTMVTVVSACAQSGSIQLGRQVHS------WIDDHGLGSNLKIVNALIDLYSKCGEV 286

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
             A   F  +   DVISWN+++  Y   +L  +AL LF  M    + P+  + +  L   
Sbjct: 287 ETACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPAC 346

Query: 324 SRTGNVYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
           ++ G + FG+ IH Y+ K   G  + S  ++++L DMY KC  IE++  VF S   R+L 
Sbjct: 347 AQLGAIDFGRWIHVYIDKRIKGVTNAS-SLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLS 405

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG------- 434
            CN+++      G    A ++F  M   GI  D++T    L A S S   +LG       
Sbjct: 406 ACNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSM 465

Query: 435 ------SCRLLHC-CAI-----------------KSGFESNIAVSCSLMDAYSRCGHIEL 470
                 + +L H  C I                     E +  + CSL+ A    G++EL
Sbjct: 466 TQNYKITPKLEHYGCMIDLLGHLGLFKEAEEMINTMTMEPDGVIWCSLLKACKMHGNVEL 525

Query: 471 SH---QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
                Q   KI   N   +  + N Y+  G   E  ++  ++  +G+
Sbjct: 526 GESFAQKLIKIEPENPGSYVLLSNIYATAGRWNEVANIRALLNDKGM 572



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 84/300 (28%), Positives = 158/300 (52%), Gaps = 1/300 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G++ SA+K+FDE+P +D+V++N +ISG     + K+AL L+ EM+
Sbjct: 168 DVVSYTALITGYASRGYIESAQKMFDEIPVKDVVSWNAIISGYADTGNNKEALDLFKEMM 227

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K   ST  +V+S C+ +G    G Q+H  +   G G NL I + L+DLY + G   
Sbjct: 228 KTNVKPDESTMVTVVSACAQSGSIQLGRQVHSWIDDHGLGSNLKIVNALIDLYSKCGEVE 287

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  L  +++ +WN M+  +  L+   E L ++ +M   G  PN ++   ++  C+
Sbjct: 288 TACGLFQGLSNKDVISWNTMIGGYTHLNLYKEALLLFQEMLRSGENPNDVTMLSILPACA 347

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++ K +  V     +  +L+D Y+ CG +  A + F+ +    + + 
Sbjct: 348 QLGAIDFGRWIHVYIDKRIKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSMHHRTLSAC 407

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +     A ++F RM+     P   +FV  L+  S +G +  G++I   +T+
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRRIFRSMTQ 467


>gi|147794059|emb|CAN66615.1| hypothetical protein VITISV_022030 [Vitis vinifera]
          Length = 818

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 171/595 (28%), Positives = 316/595 (53%), Gaps = 5/595 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ-PNPQLNIYSSNRTIDDFVKSGH 59
           ML    LP   T   +   C  +  ++   ++    Q    +L+++  +  I  + ++G 
Sbjct: 138 MLGCGTLPDKYTFPYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGC 197

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A+ LFD MP++D V +N++++G  K      A  ++ EM       ++ TF+ VLSV
Sbjct: 198 IHDARYLFDRMPSKDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSV 257

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G Q+H  V+S G  ++  + + L+ +Y + G    A  LFD +P+ +L TW
Sbjct: 258 CASEIMINFGSQLHGLVVSSGLEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTW 317

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + +    DE   ++++M + G++P+ ++F   +   S G  L +GK++H ++I+
Sbjct: 318 NGMISGYVQNGFMDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIR 377

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G V +++F+ +AL+D Y  C  +  A K FD     D++   +++S Y    +  +ALE
Sbjct: 378 NG-VSLDVFLKSALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALE 436

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  +   R R +  +    L   +    +  GK++HG++ K G   GS +V SA+ DMY
Sbjct: 437 IFRWLLQERMRANSVTLASVLPACAGLAALTLGKELHGHILKNGHG-GSCYVGSAIMDMY 495

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  ++ +   F     +   C NS++TS   +G  ++A+++F  M   G   D V++S
Sbjct: 496 AKCGKLDLAHQTFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSIS 555

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A +   + + G  + +H   ++  F S++    +L+D YS+CG+++L+ +VF+ + 
Sbjct: 556 AALSACANLPALHYG--KEIHAFMMRGAFRSDLFAESALIDMYSKCGNLDLACRVFDMME 613

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             N V + SI+  Y  +G  +++L++   M+  G+ PD VTFL +++ C H+G V EG  
Sbjct: 614 EKNEVSWNSIIAAYGNHGRLKDSLNLFHGMLGDGIQPDHVTFLAIISACGHAGQVDEGIH 673

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            F  M    GI A  +HY+CM+D+ GRAG L++A  ++   P   D  +W   L 
Sbjct: 674 YFRCMTEELGIMARMEHYACMVDLFGRAGRLNEAFGMINSMPFSPDAGVWGLYLE 728



 Score =  225 bits (574), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 149/547 (27%), Positives = 270/547 (49%), Gaps = 6/547 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +V  G    AK +F ++       +N +I G         AL  Y +M+  G      TF
Sbjct: 91  YVLCGAFLDAKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTF 150

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             V+  C        G  +H ++  +GF L++++GS L+  Y   G    A  LFD +P 
Sbjct: 151 PYVIKACGGLNSVALGRVVHDKIQFMGFELDVFVGSSLIKFYSENGCIHDARYLFDRMPS 210

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++   WN+ML  + +    D    ++ +M+     PN ++F  ++  C+  ++++ G QL
Sbjct: 211 KDGVLWNVMLNGYVKNGDWDNATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQL 270

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  V+  G ++++  VAN L+  Y+ CG L +A++ FD +P  D+++WN ++S Y     
Sbjct: 271 HGLVVSSG-LEMDSPVANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGF 329

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
           + +A  LF  M     +P   +F  FL   S    +  GK+IH Y+ + G     V ++S
Sbjct: 330 MDEASCLFHEMISAGMKPDSITFSSFLPLLSEGATLRQGKEIHCYIIRNGVSL-DVFLKS 388

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL D+Y KC  +E +  +F+      +  C ++++  + +G   +A+E+F +++ E +  
Sbjct: 389 ALIDIYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRA 448

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           + VTL++ L A +  A+  LG  + LH   +K+G   +  V  ++MD Y++CG ++L+HQ
Sbjct: 449 NSVTLASVLPACAGLAALTLG--KELHGHILKNGHGGSCYVGSAIMDMYAKCGKLDLAHQ 506

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
            F  I   + VC+ S++   S+NG   EA+D+   M   G   D V+    L+ C +   
Sbjct: 507 TFIGISXKDAVCWNSMITSCSQNGKPEEAIDLFRQMGMAGTKYDCVSISAALSACANLPA 566

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +  G+ +   M       +D    S +IDM  + G LD A  +        + + W+S++
Sbjct: 567 LHYGKEIHAFMMRG-AFRSDLFAESALIDMYSKCGNLDLACRVFDMMEEKNE-VSWNSII 624

Query: 594 RSCRVHG 600
            +   HG
Sbjct: 625 AAYGNHG 631



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 134/501 (26%), Positives = 251/501 (50%), Gaps = 14/501 (2%)

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           H     A    S+L  C++    + G Q H ++L  G G N  +G+ L+ +Y+  G  + 
Sbjct: 40  HNDDSLAPQLVSILQTCTDPSGLSHGRQAHAQMLVNGIGYNGILGTKLLGMYVLCGAFLD 99

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A ++F +L       WN M+R F  + + D  L  Y KM   G  P+  +F Y+++ C  
Sbjct: 100 AKNIFYQLRLWCSEPWNWMIRGFTMMGQFDFALLFYFKMLGCGTLPDKYTFPYVIKACGG 159

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +  G+ +H  +  +G+ ++++FV ++L+ FYS  G + +A+  FD +P  D + WN 
Sbjct: 160 LNSVALGRVVHDKIQFMGF-ELDVFVGSSLIKFYSENGCIHDARYLFDRMPSKDGVLWNV 218

Query: 284 IVSIY---ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           +++ Y    D+D   +A  +F  M+     P+  +F   L+  +    + FG Q+HG V 
Sbjct: 219 MLNGYVKNGDWD---NATGVFMEMRRTETNPNSVTFACVLSVCASEIMINFGSQLHGLVV 275

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
             G +  S  V + L  MY KC  +  +  +F+  P   L   N +++  + +G + +A 
Sbjct: 276 SSGLEMDSP-VANTLLAMYAKCGHLFDARRLFDMMPKTDLVTWNGMISGYVQNGFMDEAS 334

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M+  G+  D +T S+ L  LS  A+   G  + +HC  I++G   ++ +  +L+D
Sbjct: 335 CLFHEMISAGMKPDSITFSSFLPLLSEGATLRQG--KEIHCYIIRNGVSLDVFLKSALID 392

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +C  +E++H++F++    ++V  T++++GY  NGM   AL++   ++Q  +  + VT
Sbjct: 393 IYFKCRDVEMAHKIFDQRTPVDIVVCTAMISGYVLNGMNNNALEIFRWLLQERMRANSVT 452

Query: 521 FLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
              VL  C     +  G +L  + +K+ +G        S ++DM  + G LD A +    
Sbjct: 453 LASVLPACAGLAALTLGKELHGHILKNGHG--GSCYVGSAIMDMYAKCGKLDLAHQTFIG 510

Query: 580 TPGGGDCMMWSSLLRSCRVHG 600
                D + W+S++ SC  +G
Sbjct: 511 IS-XKDAVCWNSMITSCSQNG 530


>gi|357114601|ref|XP_003559087.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Brachypodium distachyon]
          Length = 719

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 181/590 (30%), Positives = 299/590 (50%), Gaps = 8/590 (1%)

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           S  L +A KLFDEM  RD  +Y  ++S   +     QAL LY  M++  +  +  TF+++
Sbjct: 119 SSDLPAATKLFDEMAHRDAFSYTAMMSALLRAGDWAQALALYTRMLAAAVPPTHHTFATL 178

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L++C++      G Q+H + L     LNL + + LV +Y R G    A  +    PE ++
Sbjct: 179 LALCASRRLCRHGRQLHAQFLRWQVDLNLVLKTALVHMYSRCGFMDHAHTVLCSTPETDV 238

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG---MLLDEGKQL 233
             W  M+  + +       L+M+  M+   + PN  +F  ++  CS     + +  G+QL
Sbjct: 239 VLWTAMISGYSQAGDLQTALQMFRYMEHAAMLPNAFTFAGVITACSSSVQPLAIQTGRQL 298

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGS-LIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           H+ V K   ++ +I V NALVDFYS   + L++   +F+ +   +V+SW + ++  A + 
Sbjct: 299 HARVFKFA-LEHDISVCNALVDFYSKSSTCLLDLLHTFNAVDRPNVVSWTAFIAGLARHG 357

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              DA   F  M+    +P+  +    L   S + +     +IH YV K   +  +V V 
Sbjct: 358 RDEDAFAAFAEMRAGGVQPNSFTISTLLKGCSSSQSFLHATKIHAYVLKTSSESLNVAVG 417

Query: 353 SALTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
           ++L ++Y +   ++ + AV  + A  R      SL   L   G    A+ M   M  E +
Sbjct: 418 NSLVNLYSRFARMDDAWAVATTMAFVRDSFTYTSLAKGLNQIGLPNKALGMIIHMFHEKV 477

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
            +D  +L+  L A +  AS   G  + LHCC++K G  S ++VS SL++ YS+C  +E +
Sbjct: 478 HIDGFSLACFLSAAATLASVEPG--KQLHCCSVKLGLNSQLSVSNSLINMYSQCKCLEDA 535

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             VF+ I  P+VV + ++++G + NG   EAL   E M   G+ PD VTF  VL  C+H 
Sbjct: 536 TCVFQSIKEPSVVSWNALISGLASNGCYYEALSAFEDMALVGVQPDGVTFSIVLYACSHG 595

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G +  G   F+SMK+++GI   R HY+  +DMLGRAG L +A   +   P   D  M+ +
Sbjct: 596 GFIDIGISHFSSMKTLFGISPQRSHYTLFLDMLGRAGRLAEAACTIDTMPVQPDLSMYRN 655

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
           LL  C +H + ++G  +A   +EL P D    + +S  Y    + E S +
Sbjct: 656 LLAFCELHNDLVVGETIARKALELYPSDTVFQNILSGIYGAPWKDEFSAR 705



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 110/442 (24%), Positives = 197/442 (44%), Gaps = 11/442 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSI-VPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML+  + P   T  TL   C S  +      L   + +    LN+      +  + + G 
Sbjct: 163 MLAAAVPPTHHTFATLLALCASRRLCRHGRQLHAQFLRWQVDLNLVLKTALVHMYSRCGF 222

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A  +    P  D+V +  +ISG  +    + AL ++  M    +  +A TF+ V++ 
Sbjct: 223 MDHAHTVLCSTPETDVVLWTAMISGYSQAGDLQTALQMFRYMEHAAMLPNAFTFAGVITA 282

Query: 120 CSNAG---FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL---FDELPE 173
           CS++        G Q+H RV       ++ + + LVD Y +   S   LDL   F+ +  
Sbjct: 283 CSSSVQPLAIQTGRQLHARVFKFALEHDISVCNALVDFYSK--SSTCLLDLLHTFNAVDR 340

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            N+ +W   +       R ++    + +M+A GV+PN  +   +++GCS         ++
Sbjct: 341 PNVVSWTAFIAGLARHGRDEDAFAAFAEMRAGGVQPNSFTISTLLKGCSSSQSFLHATKI 400

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIYADYD 292
           H++V+K     +N+ V N+LV+ YS    + +A      +  V D  ++ S+        
Sbjct: 401 HAYVLKTSSESLNVAVGNSLVNLYSRFARMDDAWAVATTMAFVRDSFTYTSLAKGLNQIG 460

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L   AL +   M   +      S   FL+ A+   +V  GKQ+H    KLG +   + V 
Sbjct: 461 LPNKALGMIIHMFHEKVHIDGFSLACFLSAAATLASVEPGKQLHCCSVKLGLN-SQLSVS 519

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           ++L +MY +C  +E +  VF+S    S+   N+L++ L  +G   +A+  F  M   G+ 
Sbjct: 520 NSLINMYSQCKCLEDATCVFQSIKEPSVVSWNALISGLASNGCYYEALSAFEDMALVGVQ 579

Query: 413 LDEVTLSTTLKALSVSASANLG 434
            D VT S  L A S     ++G
Sbjct: 580 PDGVTFSIVLYACSHGGFIDIG 601



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 77/305 (25%), Positives = 141/305 (46%), Gaps = 7/305 (2%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
             Q+H+   + G+   N  ++ +L+ FYS+   L  A K FD +   D  S+ +++S   
Sbjct: 91  AHQIHAQACRRGFASSNPILSCSLLVFYSS--DLPAATKLFDEMAHRDAFSYTAMMSALL 148

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                  AL L+ RM      P+  +F   L   +       G+Q+H    +   D   V
Sbjct: 149 RAGDWAQALALYTRMLAAAVPPTHHTFATLLALCASRRLCRHGRQLHAQFLRWQVDLNLV 208

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            +++AL  MY +C  ++ +  V  S P   +    ++++    +G+++ A++MF +M   
Sbjct: 209 -LKTALVHMYSRCGFMDHAHTVLCSTPETDVVLWTAMISGYSQAGDLQTALQMFRYMEHA 267

Query: 410 GIGLDEVTLSTTLKALSVSASA-NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH- 467
            +  +  T +  + A S S     + + R LH    K   E +I+V  +L+D YS+    
Sbjct: 268 AMLPNAFTFAGVITACSSSVQPLAIQTGRQLHARVFKFALEHDISVCNALVDFYSKSSTC 327

Query: 468 -IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            ++L H  F  +  PNVV +T+ + G +R+G   +A      M   G+ P+  T   +L 
Sbjct: 328 LLDLLH-TFNAVDRPNVVSWTAFIAGLARHGRDEDAFAAFAEMRAGGVQPNSFTISTLLK 386

Query: 527 GCNHS 531
           GC+ S
Sbjct: 387 GCSSS 391



 Score = 51.6 bits (122), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 46/154 (29%), Positives = 75/154 (48%), Gaps = 7/154 (4%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N QL++  SN  I+ + +   L  A  +F  +    +V++N LISG        +AL  +
Sbjct: 513 NSQLSV--SNSLINMYSQCKCLEDATCVFQSIKEPSVVSWNALISGLASNGCYYEALSAF 570

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYM 156
           ++M   G++    TFS VL  CS+ GF   GI  H   +   FG++      +  +D+  
Sbjct: 571 EDMALVGVQPDGVTFSIVLYACSHGGFIDIGIS-HFSSMKTLFGISPQRSHYTLFLDMLG 629

Query: 157 RMGPSVRALDLFDELP-ERNLATWNLMLRAFCEL 189
           R G    A    D +P + +L+ +  +L AFCEL
Sbjct: 630 RAGRLAEAACTIDTMPVQPDLSMYRNLL-AFCEL 662


>gi|356528513|ref|XP_003532847.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19191,
           mitochondrial-like [Glycine max]
          Length = 651

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 169/576 (29%), Positives = 300/576 (52%), Gaps = 6/576 (1%)

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS 149
           H + AL L+ +M   GI  + STF  VL  C+          IH  VL   F  N+++ +
Sbjct: 33  HAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQT 92

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
             VD+Y++ G    A ++F E+P R++A+WN ML  F +    D +  +   M+  G+ P
Sbjct: 93  ATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRP 152

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           + ++   ++        L     ++S  I++G V +++ VAN L+  YS CG+L  A+  
Sbjct: 153 DAVTVLLLIDSILRVKSLTSLGAVYSFGIRIG-VHMDVSVANTLIAAYSKCGNLCSAETL 211

Query: 270 FDFIP--VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
           FD I   +  V+SWNS+++ YA+++    A+  +  M      P I + +  L+   +  
Sbjct: 212 FDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPK 271

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
            ++ G  +H +  KLG D   V V + L  MY KC  + S+  +F     ++      ++
Sbjct: 272 ALFHGLLVHSHGVKLGCD-SDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMI 330

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           ++    G + +A+ +F  M   G   D VT+   +     + +  LG  + +   +I +G
Sbjct: 331 SAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELG--KWIDNYSINNG 388

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            + N+ V  +L+D Y++CG    + ++F  + +  VV +T+++   + NG  ++AL++  
Sbjct: 389 LKDNVVVCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFF 448

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
           +M++ G+ P+ +TFL VL  C H G+V+ G   FN M   YGI+    HYSCM+D+LGR 
Sbjct: 449 MMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNMMTQKYGINPGIDHYSCMVDLLGRK 508

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G L +A E+++  P   D  +WS+LL +C++HG   +G+ V+  L ELEP     Y +++
Sbjct: 509 GHLREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQLFELEPQVAVPYVEMA 568

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           N Y+    +E    IR      ++ +  G S+I+VN
Sbjct: 569 NIYASAEMWEGVAAIRRNMKYLQVRKSPGQSIIQVN 604



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 131/523 (25%), Positives = 244/523 (46%), Gaps = 30/523 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M  + + P   T   +   C  +  L +S ++ ++   +  Q NI+    T+D +VK G 
Sbjct: 44  MKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHAHVLKSCFQSNIFVQTATVDMYVKCGR 103

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST----FSS 115
           L  A  +F EMP RD+ ++N ++ G  +     +   L   M   GI+  A T      S
Sbjct: 104 LEDAHNVFVEMPVRDIASWNAMLLGFAQSGFLDRLSCLLRHMRLSGIRPDAVTVLLLIDS 163

Query: 116 VL---SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +L   S+ S    Y+ GI+I       G  +++ + + L+  Y + G    A  LFDE+ 
Sbjct: 164 ILRVKSLTSLGAVYSFGIRI-------GVHMDVSVANTLIAAYSKCGNLCSAETLFDEIN 216

Query: 173 E--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
              R++ +WN M+ A+    +  + +  Y  M   G  P+  +   ++  C     L  G
Sbjct: 217 SGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFSPDISTILNLLSSCMQPKALFHG 276

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +HSH +KLG  D ++ V N L+  YS CG +  A+  F+ +     +SW  ++S YA+
Sbjct: 277 LLVHSHGVKLG-CDSDVCVVNTLICMYSKCGDVHSARFLFNGMSDKTCVSWTVMISAYAE 335

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
              + +A+ LF  M+   ++P + + +  ++   +TG +  GK I  Y    G     V 
Sbjct: 336 KGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQTGALELGKWIDNYSINNGLKDNVV- 394

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL DMY KC     +  +F +   R++    +++T+   +G++KDA+E+F  M++ G
Sbjct: 395 VCNALIDMYAKCGGFNDAKELFYTMANRTVVSWTTMITACALNGDVKDALELFFMMLEMG 454

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI---KSGFESNIAVSCSLMDAYSRCGH 467
           +  + +T    L+A +       G    L C  +   K G    I     ++D   R GH
Sbjct: 455 MKPNHITFLAVLQACAHGGLVERG----LECFNMMTQKYGINPGIDHYSCMVDLLGRKGH 510

Query: 468 IELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDML 506
           +  + ++ + +P  P+   ++++++    +G   MG+   + L
Sbjct: 511 LREALEIIKSMPFEPDSGIWSALLSACKLHGKMEMGKYVSEQL 553



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 115/431 (26%), Positives = 207/431 (48%), Gaps = 14/431 (3%)

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           L TWN   R           L ++ +MK  G+ PN  +F ++++ C+    L   + +H+
Sbjct: 18  LFTWNSNFRHLVNQGHAQNALILFRQMKQSGITPNNSTFPFVLKACAKLSHLRNSQIIHA 77

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           HV+K      NIFV  A VD Y  CG L +A   F  +PV D+ SWN+++  +A    + 
Sbjct: 78  HVLK-SCFQSNIFVQTATVDMYVKCGRLEDAHNVFVEMPVRDIASWNAMLLGFAQSGFL- 135

Query: 296 DALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
           D L    R M+L   RP   + +  ++   R  ++     ++ +  ++G  H  V V + 
Sbjct: 136 DRLSCLLRHMRLSGIRPDAVTVLLLIDSILRVKSLTSLGAVYSFGIRIGV-HMDVSVANT 194

Query: 355 LTDMYGKCNVIESSVAVFESAPG--RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           L   Y KC  + S+  +F+      RS+   NS++ +  +      AV  +  M+D G  
Sbjct: 195 LIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCYKGMLDGGFS 254

Query: 413 LDEVTLSTTLKALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
            D   +ST L  LS       L    L+H   +K G +S++ V  +L+  YS+CG +  +
Sbjct: 255 PD---ISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKCGDVHSA 311

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             +F  +     V +T +++ Y+  G   EA+ +   M   G  PD VT L +++GC  +
Sbjct: 312 RFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALISGCGQT 371

Query: 532 GMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           G ++ G+ + N S+ +  G+  +    + +IDM  + G  + A+EL   T      + W+
Sbjct: 372 GALELGKWIDNYSINN--GLKDNVVVCNALIDMYAKCGGFNDAKELF-YTMANRTVVSWT 428

Query: 591 SLLRSCRVHGN 601
           +++ +C ++G+
Sbjct: 429 TMITACALNGD 439



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 198/396 (50%), Gaps = 8/396 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQALYLY 98
            +++  +N  I  + K G+L SA+ LFDE+ +  R +V++N +I+    F    +A+  Y
Sbjct: 186 HMDVSVANTLIAAYSKCGNLCSAETLFDEINSGLRSVVSWNSMIAAYANFEKHVKAVNCY 245

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M+  G     ST  ++LS C        G+ +H   + LG   ++ + + L+ +Y + 
Sbjct: 246 KGMLDGGFSPDISTILNLLSSCMQPKALFHGLLVHSHGVKLGCDSDVCVVNTLICMYSKC 305

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LF+ + ++   +W +M+ A+ E     E + ++N M+A G +P+ ++   ++
Sbjct: 306 GDVHSARFLFNGMSDKTCVSWTVMISAYAEKGYMSEAMTLFNAMEAAGEKPDLVTVLALI 365

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
            GC     L+ GK + ++ I  G  D N+ V NAL+D Y+ CG   +AK+ F  +    V
Sbjct: 366 SGCGQTGALELGKWIDNYSINNGLKD-NVVVCNALIDMYAKCGGFNDAKELFYTMANRTV 424

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW ++++  A    + DALELFF M     +P+  +F+  L   +  G V  G +    
Sbjct: 425 VSWTTMITACALNGDVKDALELFFMMLEMGMKPNHITFLAVLQACAHGGLVERGLECFNM 484

Query: 339 VT-KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           +T K G + G  H  S + D+ G+   +  ++ + +S P    E  + + ++LL +  + 
Sbjct: 485 MTQKYGINPGIDHY-SCMVDLLGRKGHLREALEIIKSMP---FEPDSGIWSALLSACKLH 540

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
             +EM  ++ ++   L+       ++  ++ ASA +
Sbjct: 541 GKMEMGKYVSEQLFELEPQVAVPYVEMANIYASAEM 576


>gi|222626139|gb|EEE60271.1| hypothetical protein OsJ_13308 [Oryza sativa Japonica Group]
          Length = 758

 Score =  280 bits (715), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 170/625 (27%), Positives = 320/625 (51%), Gaps = 11/625 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++  N  +  + + G +  A+ LFD MP RD V++N LI+G       + AL  + +  +
Sbjct: 10  LFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARA 69

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G      TF++ L+ C+  G + +G  +H   +  G     ++ + ++D+Y + G    
Sbjct: 70  SGDGVDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDE 129

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS- 222
              LFD   ER  A+WNL+L A+  +  P+  + +   M   GV+ +  +   +++ CS 
Sbjct: 130 VRLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSE 189

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +G   D  + LHS V+K+G +D+++FV +A+VD Y+  G L EA K FD IP  +V+ +N
Sbjct: 190 LGDSEDVRRMLHSCVVKVG-LDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYN 248

Query: 283 SIVSIYADY------DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           ++++ +A        ++  +A+ LF  M   R +PS  +F   L   + T  V  G+QIH
Sbjct: 249 AMIAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIH 308

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +V   G   G   + S L ++Y K   +  S+  F+      +    S++T+ + + + 
Sbjct: 309 AHVILSGL-QGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHF 367

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + A+ +F  ++    G D+ T+S+ + A +  +     +C+ +HC A+K+G +       
Sbjct: 368 EKALYLFRELLYTRKGTDQFTISSVMSACAALSVPT--TCKQIHCHAVKTGLDQFTVSGN 425

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           S +  Y   G ++ S Q FE+I   +   +++++  Y+ +G   +AL++ E M   G++ 
Sbjct: 426 SQIAMYRNIGDLKASKQTFEQISCLDTFSWSAMILSYAVHGYESKALELFEKMKNLGVMM 485

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           ++   L  L  C+H G+  EG   + +     G   D +  +CM+D+LGR G +  AE+ 
Sbjct: 486 NESASLAALIACSHQGLGDEGLRYYENTIPDDGFSLDVKLKACMVDLLGRVGKIADAEDF 545

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +  +    D ++W +LLR+CRVHG++    ++   LMELEP   + Y  + N Y + G+ 
Sbjct: 546 IMSSGSENDPILWHALLRACRVHGDKERCTKIGEKLMELEPFSASSYVMLYNLYMDAGKI 605

Query: 637 EVSMQIRETALARKLTRDIGHSLIE 661
            ++M+ R     R ++ + G S  +
Sbjct: 606 SLAMRTRGLMRERGISNEAGISWTD 630



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 111/477 (23%), Positives = 211/477 (44%), Gaps = 19/477 (3%)

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
           +L   +   L++ + L+ LY R G    A  LFD +P R+  +WN ++  +  L      
Sbjct: 1   MLRAAYRPGLFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLA 60

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L  +   +A G   +  +F   +  C+      +G+ +H   +  G +    F+ N+++D
Sbjct: 61  LDAFRDARASGDGVDRFTFAAALASCARVGDWRDGRVVHGLAVVSG-LARTAFLTNSVID 119

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            Y+ CG + E +  FD        SWN ++S Y        A+ +   M   R    + S
Sbjct: 120 MYAKCGMIDEVRLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMH--RSGVKLDS 177

Query: 316 FV--EFLNFASRTGNVY-FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
           F     L   S  G+     + +H  V K+G D   V V SA+ DMY K   +E ++ VF
Sbjct: 178 FALGGILKACSELGDSEDVRRMLHSCVVKVGLDL-DVFVGSAMVDMYAKNGGLEEAIKVF 236

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIK------DAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           +  P +++   N+++      GN        +AV +F  M+ + I   + T  + L+  +
Sbjct: 237 DCIPNQNVVVYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCN 296

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           ++ +   G  R +H   I SG + +  ++  L++ YS+   +  S + F+     +V  +
Sbjct: 297 LTNAVRCG--RQIHAHVILSGLQGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIW 354

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE-GQLVFNSMK 545
           TS++  + +N    +AL +   ++      D+ T   V++ C    +     Q+  +++K
Sbjct: 355 TSMITAFVQNEHFEKALYLFRELLYTRKGTDQFTISSVMSACAALSVPTTCKQIHCHAVK 414

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           +  G+D      +  I M    G L  +++  +Q     D   WS+++ S  VHG E
Sbjct: 415 T--GLDQFTVSGNSQIAMYRNIGDLKASKQTFEQIS-CLDTFSWSAMILSYAVHGYE 468



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 136/270 (50%), Gaps = 7/270 (2%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH---PK---QAL 95
           L+++  +  +D + K+G L  A K+FD +P +++V YN +I+G  +  +   P+   +A+
Sbjct: 211 LDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEIRIEAV 270

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            L+  M+   IK S  TF SVL VC+       G QIH  V+  G   + +I S L++LY
Sbjct: 271 TLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASVLINLY 330

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            +      +L  FD   + ++  W  M+ AF +    ++ L ++ ++       +  +  
Sbjct: 331 SKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKALYLFRELLYTRKGTDQFTIS 390

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  C+   +    KQ+H H +K G +D      N+ +  Y   G L  +K++F+ I  
Sbjct: 391 SVMSACAALSVPTTCKQIHCHAVKTG-LDQFTVSGNSQIAMYRNIGDLKASKQTFEQISC 449

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQ 305
            D  SW++++  YA +     ALELF +M+
Sbjct: 450 LDTFSWSAMILSYAVHGYESKALELFEKMK 479


>gi|50428671|gb|AAT77022.1| putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|108712010|gb|ABF99805.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 725

 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 170/625 (27%), Positives = 320/625 (51%), Gaps = 11/625 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++  N  +  + + G +  A+ LFD MP RD V++N LI+G       + AL  + +  +
Sbjct: 10  LFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARA 69

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G      TF++ L+ C+  G + +G  +H   +  G     ++ + ++D+Y + G    
Sbjct: 70  SGDGVDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDE 129

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS- 222
              LFD   ER  A+WNL+L A+  +  P+  + +   M   GV+ +  +   +++ CS 
Sbjct: 130 VRLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSE 189

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +G   D  + LHS V+K+G +D+++FV +A+VD Y+  G L EA K FD IP  +V+ +N
Sbjct: 190 LGDSEDVRRMLHSCVVKVG-LDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYN 248

Query: 283 SIVSIYADY------DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           ++++ +A        ++  +A+ LF  M   R +PS  +F   L   + T  V  G+QIH
Sbjct: 249 AMIAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIH 308

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +V   G   G   + S L ++Y K   +  S+  F+      +    S++T+ + + + 
Sbjct: 309 AHVILSGL-QGDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHF 367

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + A+ +F  ++    G D+ T+S+ + A +  +     +C+ +HC A+K+G +       
Sbjct: 368 EKALYLFRELLYTRKGTDQFTISSVMSACAALSVPT--TCKQIHCHAVKTGLDQFTVSGN 425

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           S +  Y   G ++ S Q FE+I   +   +++++  Y+ +G   +AL++ E M   G++ 
Sbjct: 426 SQIAMYRNIGDLKASKQTFEQISCLDTFSWSAMILSYAVHGYESKALELFEKMKNLGVMM 485

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           ++   L  L  C+H G+  EG   + +     G   D +  +CM+D+LGR G +  AE+ 
Sbjct: 486 NESASLAALIACSHQGLGDEGLRYYENTIPDDGFSLDVKLKACMVDLLGRVGKIADAEDF 545

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +  +    D ++W +LLR+CRVHG++    ++   LMELEP   + Y  + N Y + G+ 
Sbjct: 546 IMSSGSENDPILWHALLRACRVHGDKERCTKIGEKLMELEPFSASSYVMLYNLYMDAGKI 605

Query: 637 EVSMQIRETALARKLTRDIGHSLIE 661
            ++M+ R     R ++ + G S  +
Sbjct: 606 SLAMRTRGLMRERGISNEAGISWTD 630



 Score =  111 bits (277), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 136/270 (50%), Gaps = 7/270 (2%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH---PK---QAL 95
           L+++  +  +D + K+G L  A K+FD +P +++V YN +I+G  +  +   P+   +A+
Sbjct: 211 LDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEIRIEAV 270

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            L+  M+   IK S  TF SVL VC+       G QIH  V+  G   + +I S L++LY
Sbjct: 271 TLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASVLINLY 330

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            +      +L  FD   + ++  W  M+ AF +    ++ L ++ ++       +  +  
Sbjct: 331 SKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKALYLFRELLYTRKGTDQFTIS 390

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  C+   +    KQ+H H +K G +D      N+ +  Y   G L  +K++F+ I  
Sbjct: 391 SVMSACAALSVPTTCKQIHCHAVKTG-LDQFTVSGNSQIAMYRNIGDLKASKQTFEQISC 449

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQ 305
            D  SW++++  YA +     ALELF +M+
Sbjct: 450 LDTFSWSAMILSYAVHGYESKALELFEKMK 479



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 73/150 (48%), Gaps = 2/150 (1%)

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           +++ +   + +  +L+  Y RCG +  +  +F+ +P  + V + +++ GYS  G  R AL
Sbjct: 2   LRAAYRPGLFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLAL 61

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
           D        G   D+ TF   LA C   G  ++G++V + +  V G+       + +IDM
Sbjct: 62  DAFRDARASGDGVDRFTFAAALASCARVGDWRDGRVV-HGLAVVSGLARTAFLTNSVIDM 120

Query: 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             + G++D+   L  +    G+   W+ LL
Sbjct: 121 YAKCGMIDEVRLLFDRAEERGEA-SWNLLL 149


>gi|297849104|ref|XP_002892433.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297338275|gb|EFH68692.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 741

 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 169/570 (29%), Positives = 299/570 (52%), Gaps = 42/570 (7%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR----ALDLFDELPERNLATWNLMLRAFC 187
           IH +++  G     Y  S L++L + + P       A+ +F+ + E NL  WN M R   
Sbjct: 52  IHAQMIKTGLHNTNYALSKLLELCV-ISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHA 110

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             S P   L++Y  M + G+ PN  +F ++++ C+      EG+Q+H HV+KLG+ D+++
Sbjct: 111 LSSDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGY-DLDL 169

Query: 248 FVANALVDFYSACGSLIEAKKSFDF-------------------------------IPVD 276
           FV  +L+  Y   G L +A+K FD                                IPV 
Sbjct: 170 FVHTSLISVYVQNGRLEDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVK 229

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWN+++S YA+     +ALELF  M     RP   + V  ++  +++G++  G+Q+H
Sbjct: 230 DVVSWNAMISGYAETGNYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVH 289

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            ++   GF   ++ + ++L D+Y KC  +E++  +FE    + +   N+L+    H    
Sbjct: 290 SWIDDHGFG-SNLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLY 348

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS- 455
           K+A+ +F  M+  G   ++VT+ + L A +   + ++G  R +H    K    +  A S 
Sbjct: 349 KEALLLFQEMLRSGERPNDVTMLSILPACAHLGAIDIG--RWIHVYIDKRLKSATNASSL 406

Query: 456 -CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++CG IE +HQVF  I   ++  + +++ G++ +G    A D+   M + G+
Sbjct: 407 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGI 466

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD +TF+ +L+ C+ SGM+  G+ +F +M   Y I    +HY CMID+LG +G+  +AE
Sbjct: 467 EPDDITFVGLLSACSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAE 526

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E++       D ++W SLL++C++ GN  +G   A  L+++EP +   Y  +SN Y+  G
Sbjct: 527 EMINNMEMEPDGVIWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAG 586

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +    +IR     + + +  G S IE++S
Sbjct: 587 RWNEVAKIRALLNDKGMKKVPGCSSIEIDS 616



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 161/615 (26%), Positives = 272/615 (44%), Gaps = 100/615 (16%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ ++  V S H +    A  +F+ +   +++ +N +  G      P  AL LY  M
Sbjct: 66  YALSKLLELCVISPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALKLYVCM 125

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP- 160
           +S G+  ++ TF  +L  C+ +  + EG QIH  VL LG+ L+L++ + L+ +Y++ G  
Sbjct: 126 ISLGLLPNSYTFPFLLKSCAKSKAFKEGQQIHGHVLKLGYDLDLFVHTSLISVYVQNGRL 185

Query: 161 ----------------SVRAL--------------DLFDELPERNLATWNLMLRAFCELS 190
                           S  AL               LFDE+P +++ +WN M+  + E  
Sbjct: 186 EDARKVFDRSPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETG 245

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----V 245
              E L ++ +M    + P+  +   +V  C+    ++ G+Q+HS      W+D      
Sbjct: 246 NYKEALELFKEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHS------WIDDHGFGS 299

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N+ + N+L+D YS CG L  A   F+ +   DVISWN+++  Y   +L  +AL LF  M 
Sbjct: 300 NLKIVNSLMDLYSKCGELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFDHGSVHVQSALTDMYGKCNV 364
              +RP+  + +  L   +  G +  G+ IH Y+ K L     +  ++++L DMY KC  
Sbjct: 360 RSGERPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGD 419

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           IE++  VF S   +SL   N+++      G    A ++F  M   GI  D++T    L A
Sbjct: 420 IEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSA 479

Query: 425 LSVSASANLG-------------SCRLLHC-CAI----KSGF-------------ESNIA 453
            S S   +LG             + +L H  C I     SG              E +  
Sbjct: 480 CSRSGMLDLGRHIFRTMTQDYKITPKLEHYGCMIDLLGHSGLFKEAEEMINNMEMEPDGV 539

Query: 454 VSCSLMDAYSRCGHIELSH---QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           + CSL+ A    G++EL     Q   KI   N  C+  + N Y+  G   E   +     
Sbjct: 540 IWCSLLKACKIRGNVELGESFAQNLIKIEPENPGCYVLLSNIYATAGRWNEVAKI----- 594

Query: 511 QRGLIPDKVTFLCVLAGCNH---SGMVKE---GQLVFNSMKSVYGIDADRQHYSCMIDML 564
            R L+ DK   +  + GC+      +V E   G       + +YG+  +      M  +L
Sbjct: 595 -RALLNDK--GMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEE------MEVLL 645

Query: 565 GRAGILDKAEELLQQ 579
            +AG +    E+LQ+
Sbjct: 646 EKAGFVPDTSEVLQE 660



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 126/496 (25%), Positives = 229/496 (46%), Gaps = 54/496 (10%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P  ++ S    I  +   G++ SA+KLFDE+P +D+V++N +ISG  +  + K+AL L+
Sbjct: 195 SPHRDVVSYTALIKGYASRGYIESAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELF 254

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EM+   I+   ST  +V+S C+ +G    G Q+H  +   GFG NL I + L+DLY + 
Sbjct: 255 KEMMKTNIRPDESTMVTVVSACAQSGSIELGRQVHSWIDDHGFGSNLKIVNSLMDLYSKC 314

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LF+ L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++
Sbjct: 315 GELETACGLFEGLLYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGERPNDVTMLSIL 374

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNI-FVANALVDFYSACGSLIEAKKSFDFIPVDD 277
             C+    +D G+ +H ++ K      N   +  +L+D Y+ CG +  A + F+ I    
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKSATNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           + SWN+++  +A +     A ++F RM+     P   +FV  L+  SR+G +  G+ I  
Sbjct: 435 LSSWNAMIFGFAMHGRADAAFDIFSRMRKIGIEPDDITFVGLLSACSRSGMLDLGRHIFR 494

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +T+                              ++  P   LE    ++  L HSG  K
Sbjct: 495 TMTQ-----------------------------DYKITP--KLEHYGCMIDLLGHSGLFK 523

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A EM   M  E    D V   + LKA  +  +  LG     +   I+     N      
Sbjct: 524 EAEEMINNMEMEP---DGVIWCSLLKACKIRGNVELGESFAQNLIKIEP---ENPGCYVL 577

Query: 458 LMDAYSRCGHIE--------LSHQVFEKIPSPNVVCFTSIMNGY-------SRNGMGREA 502
           L + Y+  G           L+ +  +K+P  + +   S+++ +        RN      
Sbjct: 578 LSNIYATAGRWNEVAKIRALLNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGM 637

Query: 503 LDMLEVMIQR-GLIPD 517
           L+ +EV++++ G +PD
Sbjct: 638 LEEMEVLLEKAGFVPD 653


>gi|15237421|ref|NP_197188.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174141|sp|Q9LFL5.1|PP390_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At5g16860
 gi|9755687|emb|CAC01699.1| putative protein [Arabidopsis thaliana]
 gi|332004967|gb|AED92350.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 850

 Score =  280 bits (715), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 194/669 (28%), Positives = 322/669 (48%), Gaps = 52/669 (7%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY--NLLISGCGKFRHPKQALYLYD 99
           L +  ++  I  ++  G L+ A  L    P  D   Y  N LI   G      + LYL+ 
Sbjct: 57  LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDNGCANKCLYLFG 116

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M S        TF  V   C        G   H   L  GF  N+++G+ LV +Y R  
Sbjct: 117 LMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFISNVFVGNALVAMYSRCR 176

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMV 218
               A  +FDE+   ++ +WN ++ ++ +L +P   L M+++M  E G  P+ ++   ++
Sbjct: 177 SLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFGCRPDNITLVNVL 236

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+       GKQLH   +    +  N+FV N LVD Y+ CG + EA   F  + V DV
Sbjct: 237 PPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMDEANTVFSNMSVKDV 295

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQ-----------------------------LCRK 309
           +SWN++V+ Y+      DA+ LF +MQ                             +CR+
Sbjct: 296 VSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQ 355

Query: 310 ------RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD-----HGSVH-VQSALTD 357
                 +P+  + +  L+  +  G +  GK+IH Y  K   D     HG  + V + L D
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKNGHGDENMVINQLID 415

Query: 358 MYGKCNVIESSVAVFES-APG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL-- 413
           MY KC  ++++ A+F+S +P  R +     ++      G+   A+E+   M +E      
Sbjct: 416 MYAKCKKVDTARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES-NIAVSCSLMDAYSRCGHIELSH 472
           +  T+S  L A +  A+  +G  + +H  A+++   +  + VS  L+D Y++CG I  + 
Sbjct: 476 NAFTISCALVACASLAALRIG--KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDAR 533

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF+ + + N V +TS+M GY  +G G EAL + + M + G   D VT L VL  C+HSG
Sbjct: 534 LVFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSG 593

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           M+ +G   FN MK+V+G+    +HY+C++D+LGRAG L+ A  L+++ P     ++W + 
Sbjct: 594 MIDQGMEYFNRMKTVFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAF 653

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L  CR+HG   +G   A  + EL       Y+ +SN Y+  G ++   +IR     + + 
Sbjct: 654 LSCCRIHGKVELGEYAAEKITELASNHDGSYTLLSNLYANAGRWKDVTRIRSLMRHKGVK 713

Query: 653 RDIGHSLIE 661
           +  G S +E
Sbjct: 714 KRPGCSWVE 722



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 142/546 (26%), Positives = 246/546 (45%), Gaps = 70/546 (12%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT--WNLMLRAFCEL 189
           IH ++LS G  L L + S L+  Y+ +G    A+ L    P  +     WN ++R++ + 
Sbjct: 47  IHQKLLSFGI-LTLNLTSHLISTYISVGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGDN 105

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              ++ L ++  M +    P+  +F ++ + C     +  G+  H+  +  G++  N+FV
Sbjct: 106 GCANKCLYLFGLMHSLSWTPDNYTFPFVFKACGEISSVRCGESAHALSLVTGFIS-NVFV 164

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL--- 306
            NALV  YS C SL +A+K FD + V DV+SWNSI+  YA       ALE+F RM     
Sbjct: 165 GNALVAMYSRCRSLSDARKVFDEMSVWDVVSWNSIIESYAKLGKPKVALEMFSRMTNEFG 224

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
           C  RP   + V  L   +  G    GKQ+H +         ++ V + L DMY KC +++
Sbjct: 225 C--RPDNITLVNVLPPCASLGTHSLGKQLHCFAVTSEMIQ-NMFVGNCLVDMYAKCGMMD 281

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL---- 422
            +  VF +   + +   N+++      G  +DAV +F  M +E I +D VT S  +    
Sbjct: 282 EANTVFSNMSVKDVVSWNAMVAGYSQIGRFEDAVRLFEKMQEEKIKMDVVTWSAAISGYA 341

Query: 423 ------KALSV--------------------SASANLGSC---RLLHCCAI-------KS 446
                 +AL V                    S  A++G+    + +HC AI       K+
Sbjct: 342 QRGLGYEALGVCRQMLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPIDLRKN 401

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP---NVVCFTSIMNGYSRNGMGREAL 503
           G      V   L+D Y++C  ++ +  +F+ + SP   +VV +T ++ GYS++G   +AL
Sbjct: 402 GHGDENMVINQLIDMYAKCKKVDTARAMFDSL-SPKERDVVTWTVMIGGYSQHGDANKAL 460

Query: 504 DMLEVMIQRG--LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY---- 557
           ++L  M +      P+  T  C L  C     ++ G+ +       Y +   +       
Sbjct: 461 ELLSEMFEEDCQTRPNAFTISCALVACASLAALRIGKQI-----HAYALRNQQNAVPLFV 515

Query: 558 -SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
            +C+IDM  + G +  A  +        + + W+SL+    +HG    G     I  E+ 
Sbjct: 516 SNCLIDMYAKCGSISDARLVFDNMMAKNE-VTWTSLMTGYGMHG---YGEEALGIFDEMR 571

Query: 617 PVDFAV 622
            + F +
Sbjct: 572 RIGFKL 577



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 55/174 (31%), Positives = 88/174 (50%), Gaps = 15/174 (8%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQ--LNIYSSNRTIDDFVKSGHLNSAKK 65
           P   TI+     C S+  L     + +Y   N Q  + ++ SN  ID + K G ++ A+ 
Sbjct: 475 PNAFTISCALVACASLAALRIGKQIHAYALRNQQNAVPLFVSNCLIDMYAKCGSISDARL 534

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           +FD M A++ VT+  L++G G   + ++AL ++DEM   G K    T   VL  CS++G 
Sbjct: 535 VFDNMMAKNEVTWTSLMTGYGMHGYGEEALGIFDEMRRIGFKLDGVTLLVVLYACSHSGM 594

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSP-------LVDLYMRMGPSVRALDLFDELP 172
             +G++   R+ ++ FG+     SP       LVDL  R G    AL L +E+P
Sbjct: 595 IDQGMEYFNRMKTV-FGV-----SPGPEHYACLVDLLGRAGRLNAALRLIEEMP 642


>gi|225443714|ref|XP_002265079.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g18840-like [Vitis vinifera]
          Length = 536

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 169/553 (30%), Positives = 288/553 (52%), Gaps = 50/553 (9%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLG-----FGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +LS    A   +E  Q H  +L  G     F  +  I S   + + +  P   A  +F  
Sbjct: 10  ILSFAEMATSISELHQAHAHILKSGLIHSTFAASRLIASVSTNSHAQAIP--YAHSIFSR 67

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P  N   WN ++RA+     P+  L ++++M    V P+  +F + ++ C     ++EG
Sbjct: 68  IPNPNSYMWNTIIRAYANSPTPEAALTIFHQMLHASVLPDKYTFTFALKSCGSFSGVEEG 127

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H HV+K G  D ++F+ N L+  Y++CG + +A+   D +   DV+SWN+++S YA+
Sbjct: 128 RQIHGHVLKTGLGD-DLFIQNTLIHLYASCGCIEDARHLLDRMLERDVVSWNALLSAYAE 186

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
             L+  A  LF  M            VE  NF            I GYV           
Sbjct: 187 RGLMELACHLFDEM--------TERNVESWNF-----------MISGYV----------- 216

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
                        ++E +  VF   P +++   N+++T   H+G   + + +F  M   G
Sbjct: 217 ----------GVGLLEEARRVFGETPVKNVVSWNAMITGYSHAGRFSEVLVLFEDMQHAG 266

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D  TL + L A +   + + G    +H    K+G   +  V+ +L+D YS+CG IE 
Sbjct: 267 VKPDNCTLVSVLSACAHVGALSQG--EWVHAYIDKNGISIDGFVATALVDMYSKCGSIEK 324

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + +VF      ++  + SI++G S +G G+ AL +   M+  G  P++VTF+CVL+ C+ 
Sbjct: 325 ALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQIFSEMLVEGFKPNEVTFVCVLSACSR 384

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +G++ EG+ +FN M  V+GI    +HY CM+D+LGR G+L++AEEL+Q+ P     ++W 
Sbjct: 385 AGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLLGRVGLLEEAEELVQKMPQKEASVVWE 444

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           SLL +CR HGN  +  RVA  L+EL P + + + Q+SN Y+ +G ++  M++R+   A+ 
Sbjct: 445 SLLGACRNHGNVELAERVAQKLLELSPQESSSFVQLSNMYASMGRWKDVMEVRQKMRAQG 504

Query: 651 LTRDIGHSLIEVN 663
           + +D G S+IEV+
Sbjct: 505 VRKDPGCSMIEVD 517



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 199/457 (43%), Gaps = 45/457 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           + ++++R I     + H  +   A  +F  +P  +   +N +I        P+ AL ++ 
Sbjct: 38  STFAASRLIASVSTNSHAQAIPYAHSIFSRIPNPNSYMWNTIIRAYANSPTPEAALTIFH 97

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M+   +     TF+  L  C +     EG QIH  VL  G G +L+I + L+ LY   G
Sbjct: 98  QMLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCG 157

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  L D + ER++ +WN +L A+ E    +    ++++M    VE    S+ +M+ 
Sbjct: 158 CIEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVE----SWNFMIS 213

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           G                                    Y   G L EA++ F   PV +V+
Sbjct: 214 G------------------------------------YVGVGLLEEARRVFGETPVKNVV 237

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN++++ Y+      + L LF  MQ    +P   + V  L+  +  G +  G+ +H Y+
Sbjct: 238 SWNAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYI 297

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G       V +AL DMY KC  IE ++ VF S   + +   NS+++ L   G+ + A
Sbjct: 298 DKNGISIDGF-VATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHA 356

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +++F  M+ EG   +EVT    L A S +   + G   + +      G +  I     ++
Sbjct: 357 LQIFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGR-EMFNLMVHVHGIQPTIEHYGCMV 415

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           D   R G +E + ++ +K+P          + G  RN
Sbjct: 416 DLLGRVGLLEEAEELVQKMPQKEASVVWESLLGACRN 452



 Score =  123 bits (309), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 183/401 (45%), Gaps = 42/401 (10%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   +LP   T T    +C S   +     +  +  +     +++  N  I  +   G 
Sbjct: 99  MLHASVLPDKYTFTFALKSCGSFSGVEEGRQIHGHVLKTGLGDDLFIQNTLIHLYASCGC 158

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ L D M  RD+V++N L+S   +    + A +L+DEM    ++            
Sbjct: 159 IEDARHLLDRMLERDVVSWNALLSAYAERGLMELACHLFDEMTERNVE------------ 206

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
                             S  F ++ Y+G  L++          A  +F E P +N+ +W
Sbjct: 207 ------------------SWNFMISGYVGVGLLE---------EARRVFGETPVKNVVSW 239

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  +    R  EVL ++  M+  GV+P+  +   ++  C+    L +G+ +H+++ K
Sbjct: 240 NAMITGYSHAGRFSEVLVLFEDMQHAGVKPDNCTLVSVLSACAHVGALSQGEWVHAYIDK 299

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G + ++ FVA ALVD YS CGS+ +A + F+     D+ +WNSI+S  + +     AL+
Sbjct: 300 NG-ISIDGFVATALVDMYSKCGSIEKALEVFNSCLRKDISTWNSIISGLSTHGSGQHALQ 358

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  M +   +P+  +FV  L+  SR G +  G+++   +  +     ++     + D+ 
Sbjct: 359 IFSEMLVEGFKPNEVTFVCVLSACSRAGLLDEGREMFNLMVHVHGIQPTIEHYGCMVDLL 418

Query: 360 GKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHSGNIKDA 399
           G+  ++E +  + +  P +       SL+ +  + GN++ A
Sbjct: 419 GRVGLLEEAEELVQKMPQKEASVVWESLLGACRNHGNVELA 459


>gi|20146256|dbj|BAB89038.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|125571007|gb|EAZ12522.1| hypothetical protein OsJ_02419 [Oryza sativa Japonica Group]
          Length = 1062

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 183/635 (28%), Positives = 334/635 (52%), Gaps = 24/635 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  +  +  F + G L+ AK ++  +  R+ VT N LI+G  K +H + A  ++    
Sbjct: 312 DLYVGSALVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIF---- 367

Query: 103 SHGIKESAS----TFSSVLSVCSNAGFYTEGI----QIHCRVLSLG-FGLNLYIGSPLVD 153
             G ++SA+    T+  +LS  +      +G+    ++H  VL  G     + + + LV+
Sbjct: 368 -MGARDSAAVNVDTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVN 426

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G   +A  +F  +  R+  +WN ++ A  +    +  +  Y  M+   + P+  +
Sbjct: 427 MYAKCGAIDKACRVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFA 486

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
               +  C+   LL  G+QLH   +K G + ++  V+NALV  Y  CG + E  + F+ +
Sbjct: 487 AISGLSSCAGLGLLAAGQQLHCDAVKWG-LYLDTSVSNALVKMYGECGRMSECWEIFNSM 545

Query: 274 PVDDVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
              DV+SWNSI+ + A     I +++++F  M      P+  +FV FL   +    +  G
Sbjct: 546 SAHDVVSWNSIMGVMASSQAPITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELG 605

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLL 391
           KQIH  + K G    +  V +AL   Y K   ++S   +F    GR      NS+++  +
Sbjct: 606 KQIHSVMLKHGVTEDNA-VDNALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYI 664

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
           ++G++++A++    M+     +D  T S  L A +  A+   G    +H   ++S  ES+
Sbjct: 665 YNGHLQEAMDCVCLMMHSEQMMDHCTFSIVLNACASVAALERG--MEMHAFGLRSHLESD 722

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + V  +L+D YS+CG I+ + +VF  +   N   + S+++GY+R+G+GR+AL++ E M +
Sbjct: 723 VVVESALVDMYSKCGRIDYASKVFHSMSQKNEFSWNSMISGYARHGLGRKALEIFEEMQE 782

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G  PD VTF+ VL+ C+H+G+V+ G   F  M+  YGI    +HYSC+ID+LGRAG LD
Sbjct: 783 SGESPDHVTFVSVLSACSHAGLVERGLDYFELMED-YGILPRIEHYSCVIDLLGRAGELD 841

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCR--VHGNEI-IGRRVANILMELEPVDFAVYSQVSN 628
           K +E +++ P   + ++W ++L +C+   H  +I +G   + +L+ELEP +   Y   S 
Sbjct: 842 KIQEYMKRMPMKPNTLIWRTVLVACQQSKHRAKIDLGTEASRMLLELEPQNPVNYVLSSK 901

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           F++ IG +E + + R       + ++ G S + + 
Sbjct: 902 FHAAIGRWEDTAKARAAMKGAAVKKEAGRSWVTLT 936



 Score =  190 bits (482), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 157/638 (24%), Positives = 305/638 (47%), Gaps = 38/638 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ +N  ++ + K   L++A+++FD MP R+ V++  LISG      P+ A  L+  M+
Sbjct: 99  DLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGLPEDAFPLFRAML 158

Query: 103 SH--GIKESASTFSSVLSVCSNAGFYTEG--IQIHCRVLSLGFGLNLYIGSPLVDLY--M 156
               G + ++ TF SVL  C ++G    G  +Q+H  V    F  N  + + L+ +Y   
Sbjct: 159 REGPGCRPTSFTFGSVLRACQDSGPDRLGFAVQVHGLVSKTEFTSNTTVCNALISMYGSC 218

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE--GVE--PNGL 212
            +GP + A  +FD  P R+L TWN ++  + +         ++  M+ +  G+E  P   
Sbjct: 219 SVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTLFRAMQYDDSGIELRPTEH 278

Query: 213 SFCYMVRG-----CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
           +F  ++       CS+G+L     QL   V+K G    +++V +ALV  ++  G L EAK
Sbjct: 279 TFGSLITATYLSSCSLGLL----DQLFVRVLKSG-CSSDLYVGSALVSAFARHGMLDEAK 333

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN----FA 323
             +  +   + ++ N +++          A E+F   +      ++ ++V  L+    F+
Sbjct: 334 DIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDS-AAVNVDTYVVLLSAIAEFS 392

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +    +  G+++H +V + G  +  + V + L +MY KC  I+ +  VF+    R     
Sbjct: 393 TAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKACRVFQLMEARDRISW 452

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS-VSASANLG---SCRLL 439
           N+++T+L  +G  + A+  +  M    IG       +   A+S +S+ A LG   + + L
Sbjct: 453 NTIITALDQNGYCEAAMMNYCLMRQNSIG------PSNFAAISGLSSCAGLGLLAAGQQL 506

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY-SRNGM 498
           HC A+K G   + +VS +L+  Y  CG +    ++F  + + +VV + SIM    S    
Sbjct: 507 HCDAVKWGLYLDTSVSNALVKMYGECGRMSECWEIFNSMSAHDVVSWNSIMGVMASSQAP 566

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
             E++ +   M++ GL+P+KVTF+  LA      +++ G+ + + M   +G+  D    +
Sbjct: 567 ITESVQVFSNMMKSGLVPNKVTFVNFLAALTPLSVLELGKQIHSVMLK-HGVTEDNAVDN 625

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP- 617
            ++    ++G +D  E L  +  G  D + W+S++     +G+         ++M  E  
Sbjct: 626 ALMSCYAKSGDVDSCERLFSRMSGRRDAISWNSMISGYIYNGHLQEAMDCVCLMMHSEQM 685

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           +D   +S V N  + +   E  M++    L   L  D+
Sbjct: 686 MDHCTFSIVLNACASVAALERGMEMHAFGLRSHLESDV 723



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 115/482 (23%), Positives = 217/482 (45%), Gaps = 31/482 (6%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H  V+  G   +L++ + LV+ Y +      A  +FD +P RN  +W  ++        
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 192 PDEVLRMYNKMKAE--GVEPNGLSFCYMVRGCSIGMLLDEGK-------QLHSHVIKLGW 242
           P++   ++  M  E  G  P   +F  ++R C      D G        Q+H  V K  +
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQ-----DSGPDRLGFAVQVHGLVSKTEF 201

Query: 243 VDVNIFVANALVDFYSAC--GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
              N  V NAL+  Y +C  G  I A++ FD  PV D+I+WN+++S+YA          L
Sbjct: 202 TS-NTTVCNALISMYGSCSVGPPILAQRVFDTTPVRDLITWNALMSVYAKRGDAICTFTL 260

Query: 301 FFRMQL----CRKRPSIRSFVEFLNFASRTGNVYFG--KQIHGYVTKLGFDHGSVHVQSA 354
           F  MQ        RP+  +F   +  A+   +   G   Q+   V K G     ++V SA
Sbjct: 261 FRAMQYDDSGIELRPTEHTFGSLIT-ATYLSSCSLGLLDQLFVRVLKSGCS-SDLYVGSA 318

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF-GFMVDEGIGL 413
           L   + +  +++ +  ++     R+    N L+  L+   + + A E+F G      + +
Sbjct: 319 LVSAFARHGMLDEAKDIYLGLKERNAVTLNGLIAGLVKQQHGEAAAEIFMGARDSAAVNV 378

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIELSH 472
           D   +  +  A   +A   L   R +H   +++G     IAVS  L++ Y++CG I+ + 
Sbjct: 379 DTYVVLLSAIAEFSTAEQGLRKGREVHAHVLRAGHIYRKIAVSNGLVNMYAKCGAIDKAC 438

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           +VF+ + + + + + +I+    +NG    A+    +M Q  + P     +  L+ C   G
Sbjct: 439 RVFQLMEARDRISWNTIITALDQNGYCEAAMMNYCLMRQNSIGPSNFAAISGLSSCAGLG 498

Query: 533 MVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           ++  G QL  +++K  +G+  D    + ++ M G  G + +  E+   +    D + W+S
Sbjct: 499 LLAAGQQLHCDAVK--WGLYLDTSVSNALVKMYGECGRMSECWEIF-NSMSAHDVVSWNS 555

Query: 592 LL 593
           ++
Sbjct: 556 IM 557



 Score = 52.4 bits (124), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 41/175 (23%), Positives = 82/175 (46%), Gaps = 16/175 (9%)

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           LH   +K G   ++ ++  L+++Y++   ++ + +VF+ +P  N V +T +++G+  +G+
Sbjct: 87  LHLEVVKRGLTHDLFLANHLVNSYAKGARLDAARRVFDGMPGRNAVSWTCLISGHVLSGL 146

Query: 499 GREALDMLEVMIQR--GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
             +A  +   M++   G  P   TF  VL  C  SG  + G  V      V+G+ +  + 
Sbjct: 147 PEDAFPLFRAMLREGPGCRPTSFTFGSVLRACQDSGPDRLGFAV-----QVHGLVSKTEF 201

Query: 557 YS------CMIDMLGRAGILDK--AEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
            S       +I M G   +     A+ +   TP   D + W++L+      G+ I
Sbjct: 202 TSNTTVCNALISMYGSCSVGPPILAQRVFDTTP-VRDLITWNALMSVYAKRGDAI 255


>gi|224063136|ref|XP_002301008.1| predicted protein [Populus trichocarpa]
 gi|222842734|gb|EEE80281.1| predicted protein [Populus trichocarpa]
          Length = 691

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 189/662 (28%), Positives = 326/662 (49%), Gaps = 47/662 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y +   +  +     L  A KLFDEMP +++VT+  ++S       P++A+ LY  M+
Sbjct: 37  NVYIACNLVSMYADFTFLIDAYKLFDEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRML 96

Query: 103 -SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-- 159
            S     +   +S VL  C   G    G  IH R        ++ + + L+D+Y++ G  
Sbjct: 97  DSKSEVPNGFMYSVVLKACGLVGEIELGRLIHKRFSRENLDYDIVLLNALLDMYVKCGCL 156

Query: 160 PSVR------------------------------ALDLFDELPERNLATWNLMLRAFCEL 189
              R                              A++LF+++P+RN+ +WN ++    E 
Sbjct: 157 SDARKVFDRIFLRANSTSWNTMISGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAE- 215

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           +     L+   KM  EG++ +  +F   ++ CS    L  GKQ+H +V+K G ++ + F 
Sbjct: 216 NGSSRALQFVCKMHREGIKLDKFTFPCALKTCSYAGFLVAGKQIHCYVLKSG-LESSCFA 274

Query: 250 ANALVDFYSACGSLIEAKKSFDFIP------VDDVISWNSIVSIYADYDLIFDALELFFR 303
            +ALVD YS C  L +A + FD          D ++ WNS++S Y  ++    A+ +  +
Sbjct: 275 VSALVDMYSNCNGLDDAIRLFDQYSGGTGSICDSLVLWNSMLSGYVVHEKNRAAVNMIAQ 334

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +          +    L       NV  G Q+H  +   G +   V V S L D+Y K  
Sbjct: 335 IHHSGASVDSYTLSSALKVCINLLNVRLGIQVHALIVTSGHELDYV-VGSILVDLYAKLG 393

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            ++ +  +F   P + +   + L+           A+ +F  MV  G+ +D+  +S  LK
Sbjct: 394 NMKDAFKLFHRLPKKDIVAWSGLLMGCAKMELNSLALSLFRDMVTFGVEVDQYIVSNVLK 453

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
               S+ A++G+ + +H   IK G+E+      +L+D YS+CG +E    +F  +   +V
Sbjct: 454 V--CSSLASIGTGKQVHAFCIKRGYETEQVTITALIDMYSKCGEVEDGLVLFGCVADRDV 511

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           VC+T I+ G ++NG   EAL++   M+Q GL P++VT+L VL  C H+G+V E Q +F +
Sbjct: 512 VCWTGIIVGCAQNGRANEALEIFRQMVQSGLKPNEVTYLGVLTACRHAGLVVEAQTIFGT 571

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           MK  + ++   +HY CM+D+L +AG   + E+L+ + P   D  +WSS+L +C  H N  
Sbjct: 572 MKCDHRLEPQLEHYYCMVDLLCQAGYFKEVEKLIAEMPFKPDKTIWSSMLGACGTHRNTG 631

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL-TRDIGHSLIEV 662
           +   +A  L+   P D ++Y  +SN Y  +G ++   Q+RE   A+KL  +  G S IE+
Sbjct: 632 LVSTIAENLLANCPNDPSIYVMLSNAYGTLGMWDSLSQVREA--AKKLGVKAAGTSWIEI 689

Query: 663 NS 664
           +S
Sbjct: 690 SS 691



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 136/523 (26%), Positives = 245/523 (46%), Gaps = 52/523 (9%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C       +G   H  ++  G+  N+YI   LV +Y      + A  LFDE+P +N+ TW
Sbjct: 13  CGRVKALKQGKSFHSHLIKTGYSHNVYIACNLVSMYADFTFLIDAYKLFDEMPVKNIVTW 72

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
             M+ A+    +P E +++Y +M     E PNG  +  +++ C +   ++ G+ +H    
Sbjct: 73  TTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIHKRFS 132

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDA 297
           +   +D +I + NAL+D Y  CG L +A+K FD I +  +  SWN+++S Y    L+ +A
Sbjct: 133 REN-LDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEGLVEEA 191

Query: 298 LELFFRMQ-------------------------LCR-KRPSIR----SFVEFLNFASRTG 327
           + LF +M                          +C+  R  I+    +F   L   S  G
Sbjct: 192 VNLFNQMPDRNVVSWNTIIAGLAENGSSRALQFVCKMHREGIKLDKFTFPCALKTCSYAG 251

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
            +  GKQIH YV K G +  S    SAL DMY  CN ++ ++ +F+   G +   C+SL+
Sbjct: 252 FLVAGKQIHCYVLKSGLE-SSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTGSICDSLV 310

Query: 388 T-------SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL-- 438
                    ++H  N + AV M   +   G  +D  TLS+ LK        NL + RL  
Sbjct: 311 LWNSMLSGYVVHEKN-RAAVNMIAQIHHSGASVDSYTLSSALK-----VCINLLNVRLGI 364

Query: 439 -LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H   + SG E +  V   L+D Y++ G+++ + ++F ++P  ++V ++ ++ G ++  
Sbjct: 365 QVHALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLPKKDIVAWSGLLMGCAKME 424

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
           +   AL +   M+  G+  D+     VL  C+    +  G+ V ++     G + ++   
Sbjct: 425 LNSLALSLFRDMVTFGVEVDQYIVSNVLKVCSSLASIGTGKQV-HAFCIKRGYETEQVTI 483

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + +IDM  + G ++    L        D + W+ ++  C  +G
Sbjct: 484 TALIDMYSKCGEVEDGLVLF-GCVADRDVVCWTGIIVGCAQNG 525



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 116/461 (25%), Positives = 208/461 (45%), Gaps = 60/461 (13%)

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +R C     L +GK  HSH+IK G+   N+++A  LV  Y+    LI+A K FD +PV +
Sbjct: 10  IRHCGRVKALKQGKSFHSHLIKTGYSH-NVYIACNLVSMYADFTFLIDAYKLFDEMPVKN 68

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKR-PSIRSFVEFLNFASRTGNVYFGKQIH 336
           +++W ++VS Y       +A++L+ RM   +   P+   +   L      G +  G+ IH
Sbjct: 69  IVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEIELGRLIH 128

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKC--------------------------------NV 364
              ++   D+  V + +AL DMY KC                                 +
Sbjct: 129 KRFSRENLDYDIV-LLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMISGYFKEGL 187

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +E +V +F   P R++   N+++  L  +G+ + A++    M  EGI LD+ T    LK 
Sbjct: 188 VEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSR-ALQFVCKMHREGIKLDKFTFPCALKT 246

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---- 480
            S +     G  + +HC  +KSG ES+     +L+D YS C  ++ + ++F++       
Sbjct: 247 CSYAGFLVAG--KQIHCYVLKSGLESSCFAVSALVDMYSNCNGLDDAIRLFDQYSGGTGS 304

Query: 481 --PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              ++V + S+++GY  +   R A++M+  +   G   D  T    L  C +   V+ G 
Sbjct: 305 ICDSLVLWNSMLSGYVVHEKNRAAVNMIAQIHHSGASVDSYTLSSALKVCINLLNVRLGI 364

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
            V +++    G + D    S ++D+  + G +  A +L  + P   D + WS LL  C  
Sbjct: 365 QV-HALIVTSGHELDYVVGSILVDLYAKLGNMKDAFKLFHRLP-KKDIVAWSGLLMGCAK 422

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
                         MEL  +  +++  +  F  E+ ++ VS
Sbjct: 423 --------------MELNSLALSLFRDMVTFGVEVDQYIVS 449



 Score = 90.5 bits (223), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/326 (23%), Positives = 145/326 (44%), Gaps = 45/326 (13%)

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
           ++  V  +    R   +  GK  H ++ K G+ H +V++   L  MY     +  +  +F
Sbjct: 3   LKHIVAAIRHCGRVKALKQGKSFHSHLIKTGYSH-NVYIACNLVSMYADFTFLIDAYKLF 61

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASA 431
           +  P +++    +++++   +G  ++A++++  M+D    + +    S  LKA  +    
Sbjct: 62  DEMPVKNIVTWTTMVSAYTSNGKPREAIKLYTRMLDSKSEVPNGFMYSVVLKACGLVGEI 121

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI------------- 478
            LG  RL+H    +   + +I +  +L+D Y +CG +  + +VF++I             
Sbjct: 122 ELG--RLIHKRFSRENLDYDIVLLNALLDMYVKCGCLSDARKVFDRIFLRANSTSWNTMI 179

Query: 479 -------------------PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
                              P  NVV + +I+ G + NG  R AL  +  M + G+  DK 
Sbjct: 180 SGYFKEGLVEEAVNLFNQMPDRNVVSWNTIIAGLAENGSSR-ALQFVCKMHREGIKLDKF 238

Query: 520 TFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           TF C L  C+++G +  G Q+    +KS  G+++     S ++DM      LD A  L  
Sbjct: 239 TFPCALKTCSYAGFLVAGKQIHCYVLKS--GLESSCFAVSALVDMYSNCNGLDDAIRLFD 296

Query: 579 QTPGG-----GDCMMWSSLLRSCRVH 599
           Q  GG        ++W+S+L    VH
Sbjct: 297 QYSGGTGSICDSLVLWNSMLSGYVVH 322


>gi|242075862|ref|XP_002447867.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
 gi|241939050|gb|EES12195.1| hypothetical protein SORBIDRAFT_06g017170 [Sorghum bicolor]
          Length = 688

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 179/598 (29%), Positives = 293/598 (48%), Gaps = 69/598 (11%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H R+L        ++ + LV  Y R+G    A  +FDE+P RN  ++N +L A+  L RP
Sbjct: 40  HARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSYNALLSAYARLGRP 99

Query: 193 DEV---------------------------------LRMYNKMKAEGVEPNGLSFCYMVR 219
           DE                                  LR    M A+    N  SF   + 
Sbjct: 100 DEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRFLAAMHADDFVLNAYSFASALS 159

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+       G+Q+H  V +    D ++ + +ALVD Y+ C    +A++ FD +P  +V+
Sbjct: 160 ACAAEKDSRTGEQVHGLVARSPHAD-DVHIRSALVDMYAKCERPEDARRVFDAMPERNVV 218

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNS+++ Y     + +AL LF  M      P   +    ++  +       G+Q+H ++
Sbjct: 219 SWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSVMSACAGLAADREGRQVHAHM 278

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K       + + +AL DMY KC     +  +F+S P RS+    S++T    S N++DA
Sbjct: 279 VKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRSIVSETSILTGYAKSANVEDA 338

Query: 400 VEMFGFMVDEGI-------------GLDE--VTLSTTLKALSV-----------SASANL 433
             +F  MV++ +             G +E  + L   LK  S+           +A  N+
Sbjct: 339 QVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNI 398

Query: 434 GSCRL---LHCCAIKSGF------ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
              +L    H   +K GF      ES++ V  SL+D Y + G I+   +VFE++ + + V
Sbjct: 399 ADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNV 458

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + +++ GY++NG  ++AL + E M+     PD VT + VL+ C HSG+V EG+  F+SM
Sbjct: 459 SWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSM 518

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
              +GI   R HY+CM+D+LGRAG L +AEEL+   P   D ++W+SLL +CR+H N  +
Sbjct: 519 TEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPMEPDSVLWASLLGACRLHKNVEL 578

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           G   A  L EL+P +   Y  +SN Y+E+G++    ++R +   R +++  G S IE+
Sbjct: 579 GEWTAGRLFELDPQNSGPYVLLSNMYAEMGKWAEVFRVRRSMKDRGVSKQPGCSWIEI 636



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/491 (26%), Positives = 225/491 (45%), Gaps = 42/491 (8%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR--HPKQALYL 97
           P  N +S N  +  + + G  + A+ LF+ +P  D  +YN +++   +    H   AL  
Sbjct: 79  PLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAADALRF 138

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
              M +     +A +F+S LS C+       G Q+H  V       +++I S LVD+Y +
Sbjct: 139 LAAMHADDFVLNAYSFASALSACAAEKDSRTGEQVHGLVARSPHADDVHIRSALVDMYAK 198

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
                 A  +FD +PERN+ +WN ++  + +     E L ++ +M A G  P+ ++   +
Sbjct: 199 CERPEDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALMLFVEMMAAGFSPDEVTLSSV 258

Query: 218 VRGCSIGMLLD-EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-- 274
           +  C+ G+  D EG+Q+H+H++K   +  ++ + NALVD Y+ CG   EA+  FD +P  
Sbjct: 259 MSACA-GLAADREGRQVHAHMVKCDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSR 317

Query: 275 -----------------VDD------------VISWNSIVSIYADYDLIFDALELFFRMQ 305
                            V+D            VI+WN +++ YA      +A+ LF +++
Sbjct: 318 SIVSETSILTGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLK 377

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG--FDHG---SVHVQSALTDMYG 360
                P+  ++   LN      ++  G+Q H +V K G  FD G    V V ++L DMY 
Sbjct: 378 RDSIWPTHYTYGNVLNACGNIADLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYL 437

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           K   I+    VFE    R     N+++     +G  KDA+ +F  M+      D VT+  
Sbjct: 438 KTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIG 497

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP- 479
            L A   S   + G  R  H      G   +      ++D   R GH++ + ++   +P 
Sbjct: 498 VLSACGHSGLVDEGR-RYFHSMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELINDMPM 556

Query: 480 SPNVVCFTSIM 490
            P+ V + S++
Sbjct: 557 EPDSVLWASLL 567



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/154 (28%), Positives = 78/154 (50%), Gaps = 3/154 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ +++  N  +D ++K+G ++   K+F+ M ARD V++N +I G  +    K AL+L++
Sbjct: 422 PESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFE 481

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            M+       + T   VLS C ++G   EG +  H      G   +    + +VDL  R 
Sbjct: 482 RMLCSNENPDSVTMIGVLSACGHSGLVDEGRRYFHSMTEDHGITPSRDHYTCMVDLLGRA 541

Query: 159 GPSVRALDLFDELP-ERNLATWNLMLRAFCELSR 191
           G    A +L +++P E +   W  +L A C L +
Sbjct: 542 GHLKEAEELINDMPMEPDSVLWASLLGA-CRLHK 574



 Score = 47.0 bits (110), Expect = 0.037,   Method: Compositional matrix adjust.
 Identities = 26/106 (24%), Positives = 51/106 (48%), Gaps = 4/106 (3%)

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           + ++ NL   R  H   +KS       +  +L+  Y+R G +  + +VF++IP  N   +
Sbjct: 27  LRSAPNLSGARAAHARILKSPVAGETFLLNTLVSTYARLGRLRDARRVFDEIPLRNTFSY 86

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            ++++ Y+R G   EA  + E +      PD+ ++  V+A     G
Sbjct: 87  NALLSAYARLGRPDEARALFEAIPD----PDQCSYNAVVAALARHG 128


>gi|297824009|ref|XP_002879887.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
 gi|297325726|gb|EFH56146.1| hypothetical protein ARALYDRAFT_903365 [Arabidopsis lyrata subsp.
            lyrata]
          Length = 1359

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 179/616 (29%), Positives = 319/616 (51%), Gaps = 7/616 (1%)

Query: 51   IDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
            ID + K G    A ++F E+  + ++V +N++I G G     + +L LY    S+ +K  
Sbjct: 711  IDMYFKFGLSTDAWRVFVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLV 770

Query: 110  ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            +++F+  L  CS +     G QIHC V+ +G   + Y+ + L+ +Y + G    A  +F 
Sbjct: 771  STSFTGALGACSQSENSAFGRQIHCDVVKMGLDNDPYVSTSLLSMYSKCGMVGEAETVFS 830

Query: 170  ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
             + ++ L  WN M+ A+ E       L ++  M+ + V P+  +   ++  CS+  L D 
Sbjct: 831  CVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDY 890

Query: 230  GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            GK +H+ + K   +     + +AL+  YS CG   +A   F  +   D+++W S++S   
Sbjct: 891  GKSVHAELFKRP-IQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLC 949

Query: 290  DYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
                  +AL++F  M+      +P        +N  +    + FG Q+HG + K G    
Sbjct: 950  KNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTG-QVL 1008

Query: 348  SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            +V V S+L D+Y KC + E ++ VF S    ++   NS+++    +   + ++E+F  M+
Sbjct: 1009 NVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLML 1068

Query: 408  DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             +GI  D V++++ L A+S +AS   G  + LH   ++ G  S+  +  +L+D Y +CG 
Sbjct: 1069 SQGIFPDSVSITSVLVAISSTASLLKG--KSLHGYTLRLGIPSDTHLKNALIDMYVKCGF 1126

Query: 468  IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
             + +  +F+K+   +++ +  ++ GY  +G  R AL + + + + G  PD VTFL +++ 
Sbjct: 1127 SKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISA 1186

Query: 528  CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
            CNHSG V+EG+  F  MK  YGI+   +HY+ M+D+LGRAG L++A   ++  P   D  
Sbjct: 1187 CNHSGFVEEGKNFFEIMKQDYGIEPKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSS 1246

Query: 588  MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
            +W  LL + R H N  +G   A  L+ +EP   + Y Q+ N Y E G    + ++     
Sbjct: 1247 IWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLGEMK 1306

Query: 648  ARKLTRDIGHSLIEVN 663
             R L +  G S IEV+
Sbjct: 1307 ERGLQKQPGCSWIEVS 1322



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 164/611 (26%), Positives = 301/611 (49%), Gaps = 19/611 (3%)

Query: 3    STKLLPRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
            S+ L   V T  +L   C+S+  LSS   +  S      + + + +   ++ +VK G L+
Sbjct: 554  SSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSLVNMYVKCGFLD 613

Query: 62   SAKKLFDE-----MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
             A ++FD      + ARD+   N +I G  KFR  K+ +  +  M+  G++  A + S V
Sbjct: 614  YAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLGVRPDAFSLSIV 673

Query: 117  LSV-CSNAGFYTE-GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
            +SV C    F  E G QIH  +L      + ++ + L+D+Y + G S  A  +F E+ ++
Sbjct: 674  VSVLCKEGNFRREDGKQIHGYMLRNSLDGDSFLKTALIDMYFKFGLSTDAWRVFVEIEDK 733

Query: 175  -NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
             N+  WN+M+  F      +  L +Y   K+  V+    SF   +  CS       G+Q+
Sbjct: 734  SNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALGACSQSENSAFGRQI 793

Query: 234  HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
            H  V+K+G +D + +V+ +L+  YS CG + EA+  F  +    +  WN++V+ Y + D 
Sbjct: 794  HCDVVKMG-LDNDPYVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDN 852

Query: 294  IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             + ALELF  M+     P   +    ++  S  G   +GK +H  + K      +  ++S
Sbjct: 853  GYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPI-QSTPAIES 911

Query: 354  ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
            AL  +Y KC     +  VF+S   + +    SL++ L  +G  K+A+++FG M D+    
Sbjct: 912  ALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDD--- 968

Query: 414  DEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
            D +   + +    ++A A L +      +H   IK+G   N+ V  SL+D YS+CG  E+
Sbjct: 969  DSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEM 1028

Query: 471  SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
            + +VF  +   N+V + S+++ YSRN +   ++++  +M+ +G+ PD V+   VL   + 
Sbjct: 1029 ALKVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISS 1088

Query: 531  SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
            +  + +G+ +      + GI +D    + +IDM  + G    AE + ++       + W+
Sbjct: 1089 TASLLKGKSLHGYTLRL-GIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKS-LITWN 1146

Query: 591  SLLRSCRVHGN 601
             ++     HG+
Sbjct: 1147 LMIYGYGSHGD 1157



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 128/472 (27%), Positives = 230/472 (48%), Gaps = 30/472 (6%)

Query: 93   QALYLYDEMV-SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
            QAL+LY +   S  +  S  TF S+L  CS+    + G  IH  ++ LG+  + +I + L
Sbjct: 543  QALHLYTKHDGSSPLWTSVFTFPSLLKACSSLTNLSSGKTIHGSIIVLGWRYDPFIATSL 602

Query: 152  VDLYMRMGPSVRALDLFDELPE-----RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
            V++Y++ G    A+ +FD   +     R++   N M+  + +  R  E +  + +M   G
Sbjct: 603  VNMYVKCGFLDYAVQVFDGWSQSGVSARDVTVCNSMIDGYFKFRRFKEGVGCFRRMLVLG 662

Query: 207  VEPNGLSFCYMVRG-CSIGMLLDE-GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
            V P+  S   +V   C  G    E GKQ+H ++++   +D + F+  AL+D Y   G   
Sbjct: 663  VRPDAFSLSIVVSVLCKEGNFRREDGKQIHGYMLR-NSLDGDSFLKTALIDMYFKFGLST 721

Query: 265  EAKKSFDFIPVDD---VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
            +A +   F+ ++D   V+ WN ++  +   ++   +LEL+   +    +    SF   L 
Sbjct: 722  DAWRV--FVEIEDKSNVVLWNVMIVGFGGSEICESSLELYMLAKSNSVKLVSTSFTGALG 779

Query: 322  FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
              S++ N  FG+QIH  V K+G D+   +V ++L  MY KC ++  +  VF     + LE
Sbjct: 780  ACSQSENSAFGRQIHCDVVKMGLDNDP-YVSTSLLSMYSKCGMVGEAETVFSCVVDKRLE 838

Query: 382  CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
              N+++ + + + N   A+E+FGFM  + +  D  TLS  +   S+    + G  + +H 
Sbjct: 839  IWNAMVAAYVENDNGYSALELFGFMRQKSVLPDSFTLSNVISCCSMFGLYDYG--KSVHA 896

Query: 442  CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
               K   +S  A+  +L+  YS+CG    ++ VF+ +   ++V + S+++G  +NG  +E
Sbjct: 897  ELFKRPIQSTPAIESALLTLYSKCGCDTDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKE 956

Query: 502  ALDMLEVMI--QRGLIPDKVTFLCVLAGCN-----------HSGMVKEGQLV 540
            AL +   M      L PD      V+  C            H  M+K GQ++
Sbjct: 957  ALKVFGDMKDDDDSLKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVL 1008



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 109/438 (24%), Positives = 204/438 (46%), Gaps = 5/438 (1%)

Query: 45   YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
            Y S   +  + K G +  A+ +F  +  + +  +N +++   +  +   AL L+  M   
Sbjct: 807  YVSTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYVENDNGYSALELFGFMRQK 866

Query: 105  GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
             +   + T S+V+S CS  G Y  G  +H  +          I S L+ LY + G    A
Sbjct: 867  SVLPDSFTLSNVISCCSMFGLYDYGKSVHAELFKRPIQSTPAIESALLTLYSKCGCDTDA 926

Query: 165  LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK--AEGVEPNGLSFCYMVRGCS 222
              +F  + E+++  W  ++   C+  +  E L+++  MK   + ++P+      ++  C+
Sbjct: 927  YLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVINACA 986

Query: 223  IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                L  G Q+H  +IK G V +N+FV ++L+D YS CG    A K F  +  +++++WN
Sbjct: 987  GLEALSFGLQVHGSMIKTGQV-LNVFVGSSLIDLYSKCGLPEMALKVFTSMRPENIVAWN 1045

Query: 283  SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            S++S Y+  +L   ++ELF  M      P   S    L   S T ++  GK +HGY  +L
Sbjct: 1046 SMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTASLLKGKSLHGYTLRL 1105

Query: 343  GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            G    + H+++AL DMY KC   + +  +F+    +SL   N ++      G+ + A+ +
Sbjct: 1106 GIPSDT-HLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCRTALSL 1164

Query: 403  FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
            F  +   G   D+VT  + + A + S     G            G E  +    +++D  
Sbjct: 1165 FDELKKAGETPDDVTFLSLISACNHSGFVEEGK-NFFEIMKQDYGIEPKMEHYANMVDLL 1223

Query: 463  SRCGHIELSHQVFEKIPS 480
             R G +E ++   + +P+
Sbjct: 1224 GRAGRLEEAYSFIKAMPT 1241



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 77/327 (23%), Positives = 153/327 (46%), Gaps = 9/327 (2%)

Query: 6    LLPRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
            L P    +T++   C  +  LS  L +  S  +    LN++  +  ID + K G    A 
Sbjct: 971  LKPDSDIMTSVINACAGLEALSFGLQVHGSMIKTGQVLNVFVGSSLIDLYSKCGLPEMAL 1030

Query: 65   KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            K+F  M   ++V +N +IS   +   P+ ++ L++ M+S GI   + + +SVL   S+  
Sbjct: 1031 KVFTSMRPENIVAWNSMISCYSRNNLPELSIELFNLMLSQGIFPDSVSITSVLVAISSTA 1090

Query: 125  FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               +G  +H   L LG   + ++ + L+D+Y++ G S  A ++F ++  ++L TWNLM+ 
Sbjct: 1091 SLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIY 1150

Query: 185  AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
             +         L +++++K  G  P+ ++F  ++  C+    ++EGK     + +   ++
Sbjct: 1151 GYGSHGDCRTALSLFDELKKAGETPDDVTFLSLISACNHSGFVEEGKNFFEIMKQDYGIE 1210

Query: 245  VNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---IYADYDLIFDALEL 300
              +     +VD     G L EA      +P + D   W  ++S    + + +L   + E 
Sbjct: 1211 PKMEHYANMVDLLGRAGRLEEAYSFIKAMPTEADSSIWLCLLSASRTHHNVELGILSAEK 1270

Query: 301  FFRMQLCRKRPSIRSFVEFLNFASRTG 327
              RM+  R      ++V+ +N     G
Sbjct: 1271 LLRMEPERG----STYVQLINLYMEAG 1293


>gi|18394615|ref|NP_564054.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|193806507|sp|Q0WN60.2|PPR48_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g18485
 gi|332191599|gb|AEE29720.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 970

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 193/669 (28%), Positives = 332/669 (49%), Gaps = 12/669 (1%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLN 61
           +T LLP   T   +   C  +  +   L +         + +++  N  +  +   G + 
Sbjct: 180 TTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVT 239

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH----GIKESASTFSSVL 117
            A +LFD MP R++V++N +I         +++  L  EM+            +T  +VL
Sbjct: 240 DALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVL 299

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
            VC+       G  +H   + L     L + + L+D+Y + G    A  +F     +N+ 
Sbjct: 300 PVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVV 359

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKA--EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           +WN M+  F           +  +M A  E V+ + ++    V  C     L   K+LH 
Sbjct: 360 SWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHC 419

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           + +K  +V  N  VANA V  Y+ CGSL  A++ F  I    V SWN+++  +A  +   
Sbjct: 420 YSLKQEFV-YNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPR 478

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
            +L+   +M++    P   +    L+  S+  ++  GK++HG++ +   +   + V  ++
Sbjct: 479 LSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLER-DLFVYLSV 537

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
             +Y  C  + +  A+F++   +SL   N+++T  L +G    A+ +F  MV  GI L  
Sbjct: 538 LSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCG 597

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           +++     A S+  S  LG  R  H  A+K   E +  ++CSL+D Y++ G I  S +VF
Sbjct: 598 ISMMPVFGACSLLPSLRLG--REAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVF 655

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
             +   +   + +++ GY  +G+ +EA+ + E M + G  PD +TFL VL  CNHSG++ 
Sbjct: 656 NGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIH 715

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL-QQTPGGGDCMMWSSLLR 594
           EG    + MKS +G+  + +HY+C+IDMLGRAG LDKA  ++ ++     D  +W SLL 
Sbjct: 716 EGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLS 775

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           SCR+H N  +G +VA  L ELEP     Y  +SN Y+ +G++E   ++R+      L +D
Sbjct: 776 SCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKD 835

Query: 655 IGHSLIEVN 663
            G S IE+N
Sbjct: 836 AGCSWIELN 844



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 200/400 (50%), Gaps = 13/400 (3%)

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGV 207
           + ++ +Y   G    +  +FD L  +NL  WN ++ ++      DEVL  + +M     +
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDL 183

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P+  ++  +++ C+    +  G  +H  V+K G V+ ++FV NALV FY   G + +A 
Sbjct: 184 LPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE-DVFVGNALVSFYGTHGFVTDAL 242

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR----PSIRSFVEFLNFA 323
           + FD +P  +++SWNS++ +++D     ++  L   M          P + + V  L   
Sbjct: 243 QLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVC 302

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +R   +  GK +HG+  KL  D   V + +AL DMY KC  I ++  +F+    +++   
Sbjct: 303 AREREIGLGKGVHGWAVKLRLDKELV-LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSW 361

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMV--DEGIGLDEVTLSTTLKALSVSASAN-LGSCRLLH 440
           N+++      G+     ++   M+   E +  DEVT+   L A+ V    + L S + LH
Sbjct: 362 NTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTI---LNAVPVCFHESFLPSLKELH 418

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
           C ++K  F  N  V+ + + +Y++CG +  + +VF  I S  V  + +++ G++++   R
Sbjct: 419 CYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPR 478

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            +LD    M   GL+PD  T   +L+ C+    ++ G+ V
Sbjct: 479 LSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEV 518



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 133/566 (23%), Positives = 253/566 (44%), Gaps = 25/566 (4%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGI 106
            R I  +   G  + ++ +FD + ++++  +N +IS   +     + L  + EM+S   +
Sbjct: 124 TRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDL 183

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                T+  V+  C+       G+ +H  V+  G   ++++G+ LV  Y   G    AL 
Sbjct: 184 LPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQ 243

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE----PNGLSFCYMVRGCS 222
           LFD +PERNL +WN M+R F +    +E   +  +M  E  +    P+  +   ++  C+
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 303

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               +  GK +H   +KL  +D  + + NAL+D YS CG +  A+  F      +V+SWN
Sbjct: 304 REREIGLGKGVHGWAVKLR-LDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWN 362

Query: 283 SIV---SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF---GKQIH 336
           ++V   S   D    FD L    R  L          V  LN      +  F    K++H
Sbjct: 363 TMVGGFSAEGDTHGTFDVL----RQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELH 418

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            Y  K  F +  + V +A    Y KC  +  +  VF     +++   N+L+     S + 
Sbjct: 419 CYSLKQEFVYNEL-VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDP 477

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + +++    M   G+  D  T+ + L A S   S  LG  + +H   I++  E ++ V  
Sbjct: 478 RLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLG--KEVHGFIIRNWLERDLFVYL 535

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           S++  Y  CG +     +F+ +   ++V + +++ GY +NG    AL +   M+  G+  
Sbjct: 536 SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQL 595

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSC-MIDMLGRAGILDKAE 574
             ++ + V   C+    ++ G+     ++K +   DA     +C +IDM  + G + ++ 
Sbjct: 596 CGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDA---FIACSLIDMYAKNGSITQSS 652

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHG 600
           ++            W++++    +HG
Sbjct: 653 KVFNGLKEKSTA-SWNAMIMGYGIHG 677



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 89/363 (24%), Positives = 170/363 (46%), Gaps = 18/363 (4%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL---------DEGKQLHSH 236
           FCE    D+  R   +   +  E +  +F  +VR  ++G+LL         + G+++H  
Sbjct: 53  FCETGDLDKSFRTVQEFVGDD-ESSSDAFL-LVRE-ALGLLLQASGKRKDIEMGRKIHQL 109

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           V     +  +  +   ++  Y+ CGS  +++  FD +   ++  WN+++S Y+  +L  +
Sbjct: 110 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 169

Query: 297 ALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
            LE F  M       P   ++   +   +   +V  G  +HG V K G     V V +AL
Sbjct: 170 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE-DVFVGNAL 228

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLD 414
              YG    +  ++ +F+  P R+L   NS++     +G  +++  + G M++E G G  
Sbjct: 229 VSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAF 288

Query: 415 EVTLSTTLKALSVSA-SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
              ++T +  L V A    +G  + +H  A+K   +  + ++ +LMD YS+CG I  +  
Sbjct: 289 MPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQM 348

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG--LIPDKVTFLCVLAGCNHS 531
           +F+   + NVV + +++ G+S  G      D+L  M+  G  +  D+VT L  +  C H 
Sbjct: 349 IFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHE 408

Query: 532 GMV 534
             +
Sbjct: 409 SFL 411


>gi|302793246|ref|XP_002978388.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
 gi|300153737|gb|EFJ20374.1| hypothetical protein SELMODRAFT_108652 [Selaginella moellendorffii]
          Length = 687

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 162/569 (28%), Positives = 309/569 (54%), Gaps = 7/569 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  G+K +  TF +VL+   +     +G  IH  V      L++++ + LV+ Y + G 
Sbjct: 1   MLLEGVKANVITFLNVLNSVVDPDALRKGKFIHSCVRESEHSLDVFVNTALVNTYTKCGS 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +P R++ TWN M+ A+    R  E   ++ +M+ EG   + ++F  ++  
Sbjct: 61  LTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRMQHEGERCDRVTFLSILDA 120

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C     L  GK +   + +  + ++++FV  AL+  Y+ C S   A + F  +   ++I+
Sbjct: 121 CVNPENLQHGKHVRESISETSF-ELDLFVGTALITMYARCRSPENAAQVFGRMKQKNLIT 179

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W++I++ +AD+    +AL  F  MQ     P+  +F+  LN  +    +    +IH  +T
Sbjct: 180 WSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGFTTPSGLEELSRIHLLIT 239

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVA--VFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + G D  +  + +AL ++YG+C   E  VA  + +    + +   N L+      G  ++
Sbjct: 240 EHGLDDTTT-MSNALVNVYGRCETGELDVAEVILQEMDEQQITAWNVLINGYTLHGRSRE 298

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+E +  +  E I +D+VT  + L A + S S  L   +++H  A++ G +S++ V  +L
Sbjct: 299 ALETYQRLQLEAIPVDKVTFISVLNACTSSTS--LAEGKMIHSNAVECGLDSDVIVKNAL 356

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
            + YS+CG +E + ++F+ +P  + V +  ++  Y+++G   E L ++  M Q G+  + 
Sbjct: 357 TNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEVLKLIRKMEQEGVKLNG 416

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TF+ VL+ C+H+G++ EG   F+S+    GI+   +HY C++D+LGRAG L +AE+ + 
Sbjct: 417 ITFVSVLSSCSHAGLIAEGCQYFHSLGHDRGIEVKTEHYGCLVDLLGRAGKLQEAEKYIS 476

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           + P   + + W+SLL +CRVH +   G+  A  L+EL+P + +    +SN YSE G+++ 
Sbjct: 477 KMPSEPEIVTWASLLGACRVHKDLDRGKLAARKLLELDPGNSSASVVLSNIYSERGDWKN 536

Query: 639 SMQIRETALARKLTRDIGHSLIEV-NSCH 666
           + ++R    +R++ +  G S I+V N  H
Sbjct: 537 AAKLRRAMASRRVKKVPGISSIQVKNKVH 565



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/452 (26%), Positives = 223/452 (49%), Gaps = 6/452 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++ +   ++ + K G L  A+K+FD MP R + T+N +IS         +A +++  M
Sbjct: 43  LDVFVNTALVNTYTKCGSLTDARKVFDGMPCRSVGTWNSMISAYSISERSGEAFFIFQRM 102

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G +    TF S+L  C N      G  +   +    F L+L++G+ L+ +Y R    
Sbjct: 103 QHEGERCDRVTFLSILDACVNPENLQHGKHVRESISETSFELDLFVGTALITMYARCRSP 162

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F  + ++NL TW+ ++ AF +     E LR +  M+ EG+ PN ++F  ++ G 
Sbjct: 163 ENAAQVFGRMKQKNLITWSAIITAFADHGHCGEALRYFRMMQQEGILPNRVTFISLLNGF 222

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC--GSLIEAKKSFDFIPVDDVI 279
           +    L+E  ++H  + + G +D    ++NALV+ Y  C  G L  A+     +    + 
Sbjct: 223 TTPSGLEELSRIHLLITEHG-LDDTTTMSNALVNVYGRCETGELDVAEVILQEMDEQQIT 281

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WN +++ Y  +    +ALE + R+QL        +F+  LN  + + ++  GK IH   
Sbjct: 282 AWNVLINGYTLHGRSREALETYQRLQLEAIPVDKVTFISVLNACTSSTSLAEGKMIHSNA 341

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            + G D   V V++ALT+MY KC  +E++  +F+S P RS    N ++ +    G  ++ 
Sbjct: 342 VECGLD-SDVIVKNALTNMYSKCGSMENARRIFDSMPIRSAVSWNGMLQAYAQHGESEEV 400

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +++   M  EG+ L+ +T  + L + S +     G C+  H      G E        L+
Sbjct: 401 LKLIRKMEQEGVKLNGITFVSVLSSCSHAGLIAEG-CQYFHSLGHDRGIEVKTEHYGCLV 459

Query: 460 DAYSRCGHIELSHQVFEKIPS-PNVVCFTSIM 490
           D   R G ++ + +   K+PS P +V + S++
Sbjct: 460 DLLGRAGKLQEAEKYISKMPSEPEIVTWASLL 491


>gi|225469326|ref|XP_002268072.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g38010-like [Vitis vinifera]
          Length = 590

 Score =  279 bits (714), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 164/540 (30%), Positives = 294/540 (54%), Gaps = 16/540 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL-FDELPERNLAT----WNLMLRA 185
           QIH  +++ G   + ++ S + + +   G  +  +D  FD L + +L      +N ++ A
Sbjct: 23  QIHAHLIASGLLHDEFVLSKVSEFF---GKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAA 79

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           +     P     +Y ++   G  P+  +F  +++ C+  + + EG+Q+H   +K+G++  
Sbjct: 80  YASSCTPKAAFLVYGRIVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFL-C 138

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +++V N+L+ FYS CG    A + FD + V DV+SW  ++S Y    L  +A+ LF +M 
Sbjct: 139 DLYVQNSLLHFYSVCGKWGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD 198

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
           +    P++ +FV  L    R G +  GK +HG V K  F  G V V +AL DMY KC  +
Sbjct: 199 VV---PNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLV-VGNALVDMYVKCECL 254

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  +F+  P R +    S+++ L+     KD++E+F  M   G+  D + L++ L A 
Sbjct: 255 CEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSAC 314

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +   + + G  R +     + G E +I +  +L+D Y++CG IE++  +F  IP+ N+  
Sbjct: 315 ASLGALDYG--RWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFT 372

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + +++ G + +G G EAL   E+MI  G+ P++VTFL +L  C HSG+V EG+  F  M 
Sbjct: 373 WNALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMI 432

Query: 546 SV-YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           S  +      +HY CMID+L RAG+LD+A + ++  P   D ++W +LL +C+ +GN  +
Sbjct: 433 SQPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANGNVEL 492

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            + + + L+EL+  D  VY  +SN Y+    ++   ++R     + + +  G S+IEV+ 
Sbjct: 493 SQEILSHLLELKSQDSGVYVLLSNIYATNERWDDVTRVRRLMKDKGIRKFPGSSVIEVDG 552



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 127/458 (27%), Positives = 212/458 (46%), Gaps = 17/458 (3%)

Query: 52  DDFVKSG-------HLNSAKKLFDEMPARDM----VTYNLLISGCGKFRHPKQALYLYDE 100
           D+FV S        H+      FD +   D+    + YN LI+       PK A  +Y  
Sbjct: 36  DEFVLSKVSEFFGKHIGFVDYAFDFLNQTDLHVGTLPYNTLIAAYASSCTPKAAFLVYGR 95

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +V +G      TF  VL  C+      EG Q+H   + +GF  +LY+ + L+  Y   G 
Sbjct: 96  IVGNGFVPDMYTFPVVLKACTKFLGVQEGEQVHGVAVKMGFLCDLYVQNSLLHFYSVCGK 155

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FDE+  R++ +W  ++  +      DE + ++ KM    V PN  +F  ++  
Sbjct: 156 WGGAGRVFDEMLVRDVVSWTGLISGYVRTGLFDEAINLFLKMD---VVPNVATFVSVLVA 212

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C     L  GK +H  V K  +  + + V NALVD Y  C  L EA+K FD +P  D++S
Sbjct: 213 CGRMGYLSMGKGVHGLVYKRAF-GIGLVVGNALVDMYVKCECLCEARKLFDELPDRDIVS 271

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W SI+S         D+LELF+ MQ+    P        L+  +  G + +G+ +  Y+ 
Sbjct: 272 WTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSACASLGALDYGRWVQEYIE 331

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           + G +   +H+ +AL DMY KC  IE ++ +F   P R++   N+L+  L   G+  +A+
Sbjct: 332 RQGIE-WDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTWNALLGGLAMHGHGHEAL 390

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           + F  M+  GI  +EVT    L A   S     G        +    F   +     ++D
Sbjct: 391 KHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMISQPFNFSPRLEHYGCMID 450

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG 497
              R G ++ +++    +P  P+V+ + ++++    NG
Sbjct: 451 LLCRAGLLDEAYKFIRNMPLPPDVLIWGALLSACKANG 488



 Score =  119 bits (298), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 79/289 (27%), Positives = 138/289 (47%), Gaps = 3/289 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
            L   ++P V T  ++   C  +  LS    +          + +   N  +D +VK   
Sbjct: 194 FLKMDVVPNVATFVSVLVACGRMGYLSMGKGVHGLVYKRAFGIGLVVGNALVDMYVKCEC 253

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+KLFDE+P RD+V++  +ISG  + + PK +L L+ +M   G++      +SVLS 
Sbjct: 254 LCEARKLFDELPDRDIVSWTSIISGLVQCKQPKDSLELFYDMQISGVEPDRIILTSVLSA 313

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++ G    G  +   +   G   +++IG+ LVD+Y + G    AL +F+ +P RN+ TW
Sbjct: 314 CASLGALDYGRWVQEYIERQGIEWDIHIGTALVDMYAKCGCIEMALHIFNGIPNRNIFTW 373

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N +L          E L+ +  M   G+ PN ++F  ++  C    L+ EG+     +I 
Sbjct: 374 NALLGGLAMHGHGHEALKHFELMIGAGIRPNEVTFLAILTACCHSGLVAEGRSYFYQMIS 433

Query: 240 LGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVS 286
             +     +     ++D     G L EA K    +P+  DV+ W +++S
Sbjct: 434 QPFNFSPRLEHYGCMIDLLCRAGLLDEAYKFIRNMPLPPDVLIWGALLS 482


>gi|347954540|gb|AEP33770.1| organelle transcript processing 82, partial [Raphanus sativus]
          Length = 675

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 162/536 (30%), Positives = 285/536 (53%), Gaps = 37/536 (6%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +F+ + E NL  WN MLR     S P   L MY +M + G  PN  SF ++++ C+ 
Sbjct: 17  AISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKSCAK 76

Query: 224 GMLLDEGKQLHSHVIKLG-----WVD---VNIFVAN----------------------AL 253
               +EG+Q+H+ V+KLG     +V    ++++  N                      AL
Sbjct: 77  SKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSCTAL 136

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +  Y++ G    A+K FD I   DV+SWN++++ Y +     +ALELF  M     RP  
Sbjct: 137 ITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVRPDE 196

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVA 370
            + V  ++  +++G++  G+Q+H +V     DHG   S+ + +AL D+Y KC  +E++  
Sbjct: 197 GTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVETAFG 256

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +FE    + +   N+L+    H+   K+A+ +F  M+  G   ++VTL + L A +   +
Sbjct: 257 LFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAHLGA 316

Query: 431 ANLGSCRLLHCCAIKS--GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            ++G  R +H    K   G  +  ++  SL+D Y++CG IE +HQVF  +   ++  + +
Sbjct: 317 IDIG--RWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWNA 374

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ G++ +G    A D+   M    + PD +TF+ +L+ C+HSG++  G+ +F SM   Y
Sbjct: 375 MIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFKSMTQDY 434

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            +    +HY CMID+LG +G+  +AEE++   P   D ++W SLL++C+ HGN  +    
Sbjct: 435 NLTPKLEHYGCMIDLLGHSGLFKEAEEMIHTMPMEPDGVIWCSLLKACKKHGNLELAESF 494

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           A  L+++EP +   Y  +SN Y+  G +E   ++R     + + +  G S IEV+S
Sbjct: 495 AQKLIKIEPENSGSYVLLSNIYATAGRWEDVARVRGVLNGKGMKKVPGCSSIEVDS 550



 Score =  167 bits (423), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 128/513 (24%), Positives = 225/513 (43%), Gaps = 80/513 (15%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A  +F+ +   +++ +N ++ G      P  AL +Y  MVS G   ++ +F  +L  
Sbjct: 14  LPYAISVFETIQEPNLLIWNTMLRGHASSSDPVSALEMYVRMVSLGHLPNSYSFPFLLKS 73

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-----------PSVR----- 163
           C+ +  + EG QIH +VL LG GL+ Y+ + L+ +Y R G            S R     
Sbjct: 74  CAKSKAFEEGRQIHAQVLKLGCGLDRYVHTSLISMYARNGGLEDARKVFDASSHRDVVSC 133

Query: 164 ---------------ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
                          A  +FDE+ ER++ +WN M+  + E  R +E L ++ +M    V 
Sbjct: 134 TALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMMRTNVR 193

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV---DVNIFVANALVDFYSACGSLIE 265
           P+  +   +V  C+    ++ G+Q+HS V           ++ + NAL+D YS CG +  
Sbjct: 194 PDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKCGDVET 253

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A   F+ +   DV+SWN+++  Y   +L  +AL LF  M    + P+  + +  L   + 
Sbjct: 254 AFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVLPACAH 313

Query: 326 TGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
            G +  G+ IH Y+  KL        ++++L DMY KC  IE++  VF S   RSL   N
Sbjct: 314 LGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRSLSSWN 373

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           +++      G    A ++F  M    +  D++T                           
Sbjct: 374 AMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITF-------------------------- 407

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-----SPNVVCFTSIMNGYSRNGMG 499
                        L+ A S  G ++L  Q+F+ +      +P +  +  +++    +G+ 
Sbjct: 408 -----------VGLLSACSHSGLLDLGRQIFKSMTQDYNLTPKLEHYGCMIDLLGHSGLF 456

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           +EA +M+  M    + PD V +  +L  C   G
Sbjct: 457 KEAEEMIHTM---PMEPDGVIWCSLLKACKKHG 486



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 85/304 (27%), Positives = 156/304 (51%), Gaps = 5/304 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G   SA+K+FDE+  RD+V++N +I+G  +    ++AL L+ EM+
Sbjct: 129 DVVSCTALITGYASRGDFRSARKVFDEITERDVVSWNAMITGYVENGRYEEALELFKEMM 188

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL----GFGLNLYIGSPLVDLYMRM 158
              ++    T  SV+S C+ +G    G Q+H  V       GF  +L I + L+DLY + 
Sbjct: 189 RTNVRPDEGTLVSVVSACAQSGSIELGRQVHSWVDDDDDDHGFSSSLKIVNALIDLYSKC 248

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LF+ L  +++ +WN ++  +   +   E L ++ +M   G  PN ++   ++
Sbjct: 249 GDVETAFGLFEGLSCKDVVSWNTLIGGYTHTNLYKEALLLFQEMLRSGECPNDVTLLSVL 308

Query: 219 RGCSIGMLLDEGKQLHSHV-IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
             C+    +D G+ +H ++  KL  V     +  +L+D Y+ CG +  A + F+ +    
Sbjct: 309 PACAHLGAIDIGRWIHVYIDKKLKGVTNETSLRTSLIDMYAKCGDIEAAHQVFNSMLYRS 368

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           + SWN+++  +A +     A +LF RM+  R  P   +FV  L+  S +G +  G+QI  
Sbjct: 369 LSSWNAMIFGFAMHGRANAAFDLFSRMRGNRVEPDDITFVGLLSACSHSGLLDLGRQIFK 428

Query: 338 YVTK 341
            +T+
Sbjct: 429 SMTQ 432


>gi|356497951|ref|XP_003517819.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Glycine max]
          Length = 828

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 169/606 (27%), Positives = 318/606 (52%), Gaps = 5/606 (0%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L+ A+K+FDE+  RD+V+++ +++   +   P++ L +   MVS G+   + T  SV 
Sbjct: 151 GCLSDARKVFDEIRVRDLVSWSSVVACYVENGRPREGLEMLRWMVSEGVGPDSVTMLSVA 210

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C   G       +H  V+      +  + + L+ +Y +      A  +F+ + + + A
Sbjct: 211 EACGKVGCLRLAKSVHGYVIRKEMAGDASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTA 270

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            W  M+ +  +    +E +  + KM+   VE N ++   ++  C+    L EGK +H  +
Sbjct: 271 CWTSMISSCNQNGCFEEAIDAFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFI 330

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           ++      ++ +  AL+DFY+AC  +   +K    I    V+SWN+++SIYA   L  +A
Sbjct: 331 LRREMDGADLDLGPALMDFYAACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEA 390

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           + LF  M      P   S    ++  +   +V FG+QIHG+VTK GF      VQ++L D
Sbjct: 391 MVLFVCMLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGF--ADEFVQNSLMD 448

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  ++ +  +F+    +S+   N ++     +G   +A+++F  M    + ++EVT
Sbjct: 449 MYSKCGFVDLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVT 508

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
             + ++A   S S  L   + +H   + SG + ++ +  +L+D Y++CG ++ +  VF  
Sbjct: 509 FLSAIQA--CSNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNS 566

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +P  +VV +++++  Y  +G    A  +   M++  + P++VTF+ +L+ C H+G V+EG
Sbjct: 567 MPEKSVVSWSAMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEG 626

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           +  FNSM+  YGI  + +H++ ++D+L RAG +D A E+++ T    D  +W +LL  CR
Sbjct: 627 KFYFNSMRD-YGIVPNAEHFASIVDLLSRAGDIDGAYEIIKSTCQHIDASIWGALLNGCR 685

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           +HG   +   +   L E+   D   Y+ +SN Y+E G +  S ++R       L +  G+
Sbjct: 686 IHGRMDLIHNIHKELREIRTNDTGYYTLLSNIYAEGGNWYESRKVRSRMEGMGLKKVPGY 745

Query: 658 SLIEVN 663
           S IE++
Sbjct: 746 SSIEID 751



 Score =  208 bits (529), Expect = 9e-51,   Method: Compositional matrix adjust.
 Identities = 151/602 (25%), Positives = 294/602 (48%), Gaps = 20/602 (3%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           T  +P  R+ +TL     S+  L + L++      +P     +S + ++ + + G L+S+
Sbjct: 2   TLYMPLFRSCSTL----RSLSQLHAHLVVTGL-HSDP----LASTKLLESYARMGSLHSS 52

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHP-KQALYLYDEMVSHGIKESAST---FSSVLSV 119
           + +F+  P+ D   + +LI  C  + H   Q + LY   +  G + + +    + SV+  
Sbjct: 53  RLVFETHPSPDSFMFGVLIK-CYLWHHLFDQVVSLYHHHIQKGSRLTQNCTFLYPSVIKA 111

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            S  G    G ++H R++  G G +  IG+ L+ +Y  +G    A  +FDE+  R+L +W
Sbjct: 112 ISVVGGLVVGRKVHGRIVKTGLGTDHVIGTSLLGMYGELGCLSDARKVFDEIRVRDLVSW 171

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           + ++  + E  RP E L M   M +EGV P+ ++   +   C     L   K +H +VI+
Sbjct: 172 SSVVACYVENGRPREGLEMLRWMVSEGVGPDSVTMLSVAEACGKVGCLRLAKSVHGYVIR 231

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                 +  + N+L+  Y  C  L  AK  F+ +       W S++S         +A++
Sbjct: 232 KEMAG-DASLRNSLIVMYGQCSYLRGAKGMFESVSDPSTACWTSMISSCNQNGCFEEAID 290

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F +MQ      +  + +  L   +R G +  GK +H ++ +   D   + +  AL D Y
Sbjct: 291 AFKKMQESEVEVNAVTMISVLCCCARLGWLKEGKSVHCFILRREMDGADLDLGPALMDFY 350

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
             C  I S   +       S+   N+L++     G  ++A+ +F  M+++G+  D  +L+
Sbjct: 351 AACWKISSCEKLLCLIGNSSVVSWNTLISIYAREGLNEEAMVLFVCMLEKGLMPDSFSLA 410

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           +++ A + ++S   G  + +H    K GF     V  SLMD YS+CG ++L++ +F+KI 
Sbjct: 411 SSISACAGASSVRFG--QQIHGHVTKRGFADEF-VQNSLMDMYSKCGFVDLAYTIFDKIW 467

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             ++V +  ++ G+S+NG+  EAL + + M    +  ++VTFL  +  C++SG + +G+ 
Sbjct: 468 EKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQACSNSGYLLKGKW 527

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           + + +  V G+  D    + ++DM  + G L  A+ +    P     + WS+++ +  +H
Sbjct: 528 IHHKL-VVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMP-EKSVVSWSAMIAAYGIH 585

Query: 600 GN 601
           G 
Sbjct: 586 GQ 587



 Score =  103 bits (258), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 116/231 (50%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML   L+P   ++ +    C     +     +  +       + +  N  +D + K G +
Sbjct: 397 MLEKGLMPDSFSLASSISACAGASSVRFGQQIHGHVTKRGFADEFVQNSLMDMYSKCGFV 456

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           + A  +FD++  + +VT+N +I G  +     +AL L+DEM  + +  +  TF S +  C
Sbjct: 457 DLAYTIFDKIWEKSIVTWNCMICGFSQNGISVEALKLFDEMCFNCMDINEVTFLSAIQAC 516

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           SN+G+  +G  IH +++  G   +LYI + LVD+Y + G    A  +F+ +PE+++ +W+
Sbjct: 517 SNSGYLLKGKWIHHKLVVSGVQKDLYIDTALVDMYAKCGDLKTAQGVFNSMPEKSVVSWS 576

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            M+ A+    +      ++ KM    ++PN ++F  ++  C     ++EGK
Sbjct: 577 AMIAAYGIHGQITAATTLFTKMVESHIKPNEVTFMNILSACRHAGSVEEGK 627


>gi|255558188|ref|XP_002520121.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540613|gb|EEF42176.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 589

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 165/549 (30%), Positives = 302/549 (55%), Gaps = 8/549 (1%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S+L  C+    +  G+ +H   L  G   ++ + + +++LY + G  + A  +FDE+ +R
Sbjct: 8   SLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDEMSDR 67

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           NL +W+ ++  + +  +P   L ++++M+   + PN   F  ++  C+    L +G Q+H
Sbjct: 68  NLVSWSAIISGYDQTGQPLLALNLFSQMR---IVPNEYVFASVISACASLTALSQGLQVH 124

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           +  +KLG V V+ FV+NAL+  Y  CG   +A    + +   + +S+N++++ + +    
Sbjct: 125 AQSLKLGCVSVS-FVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVENQQP 183

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
              +E F  M+     P   +F   L   +   + + G Q+H  + KL  +  S  + + 
Sbjct: 184 EKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLE-DSAFIGNV 242

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGL 413
           +  MY K N+IE +  VF     + L   N+L+T+     + + A+ +F  M+D   +  
Sbjct: 243 IITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHERALRVFRDMLDVCFVKP 302

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D+ T +  L A +  AS   G  + +H   I++    ++ VS +L++ Y++CG I+ S+ 
Sbjct: 303 DDFTFAGVLAACAGLASIRHG--KQIHGHLIRTRQYQDVGVSNALVNMYAKCGSIKNSYD 360

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VF +    N+V + +I+  +  +G+G  AL+  E M   G+ PD VTF+ +L  CNH+G+
Sbjct: 361 VFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTACNHAGL 420

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           V+EGQ+ FNSM+  YGI  + +H+SC+ID+LGRAG L +AEE +++ P G D ++  SLL
Sbjct: 421 VEEGQVYFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLPFGHDPIILGSLL 480

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
            +CR+HG+ +IG  +A  L++L+PV  + Y  +SN Y+    +    +  +      L +
Sbjct: 481 SACRLHGDMVIGEHLATQLLKLQPVTTSPYVLLSNLYASDEMWGGVAEAWKMLKYSGLKK 540

Query: 654 DIGHSLIEV 662
           + GHSLI+V
Sbjct: 541 EPGHSLIDV 549



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/474 (28%), Positives = 231/474 (48%), Gaps = 14/474 (2%)

Query: 11  RTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKLFDE 69
             I +L   C  I      L L +       L +I  SN  I+ + K G++  A+++FDE
Sbjct: 4   EAIGSLLHHCAKIKAFLHGLSLHAAALKTGMLSDIIVSNHVINLYSKCGNVIFARRMFDE 63

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R++V+++ +ISG  +   P  AL L+ +M    I  +   F+SV+S C++    ++G
Sbjct: 64  MSDRNLVSWSAIISGYDQTGQPLLALNLFSQM---RIVPNEYVFASVISACASLTALSQG 120

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           +Q+H + L LG     ++ + L+ +YM+ G    AL + + + E N  ++N ++  F E 
Sbjct: 121 LQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDALLVHNVMSEPNAVSYNALIAGFVEN 180

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
            +P++ +  +  M+ +G  P+  +F  ++  C+       G QLH  +IKL   D + F+
Sbjct: 181 QQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSYDDFWRGMQLHCQMIKLNLED-SAFI 239

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS---IYADYDLIFDALELFFRM-Q 305
            N ++  YS    + EA+K F  I   D+ISWN++V+      D++    AL +F  M  
Sbjct: 240 GNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLVTACCFCKDHE---RALRVFRDMLD 296

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
           +C  +P   +F   L   +   ++  GKQIHG++ +    +  V V +AL +MY KC  I
Sbjct: 297 VCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTR-QYQDVGVSNALVNMYAKCGSI 355

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           ++S  VF     R+L   N+++ +  + G    A+E F  M   GI  D VT    L A 
Sbjct: 356 KNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHFEKMKTVGIHPDSVTFVGLLTAC 415

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + +     G     +      G   NI     L+D   R G ++ + +  EK+P
Sbjct: 416 NHAGLVEEGQV-YFNSMEEAYGIFPNIEHFSCLIDLLGRAGRLQEAEEYMEKLP 468



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 181/380 (47%), Gaps = 15/380 (3%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNI-YSSNRTIDDFVKSGHLNSA 63
           +++P      ++   C S+  LS  L + +       +++ + SN  I  ++K G    A
Sbjct: 96  RIVPNEYVFASVISACASLTALSQGLQVHAQSLKLGCVSVSFVSNALISMYMKCGLCTDA 155

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
             + + M   + V+YN LI+G  + + P++ +  +  M   G      TFS +L +C++ 
Sbjct: 156 LLVHNVMSEPNAVSYNALIAGFVENQQPEKGIEAFKVMRQKGFAPDRFTFSGLLGICTSY 215

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
             +  G+Q+HC+++ L    + +IG+ ++ +Y +      A  +F  + E++L +WN ++
Sbjct: 216 DDFWRGMQLHCQMIKLNLEDSAFIGNVIITMYSKFNLIEEAEKVFGLIKEKDLISWNTLV 275

Query: 184 RAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL-G 241
            A C     +  LR++  M     V+P+  +F  ++  C+    +  GKQ+H H+I+   
Sbjct: 276 TACCFCKDHERALRVFRDMLDVCFVKPDDFTFAGVLAACAGLASIRHGKQIHGHLIRTRQ 335

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
           + DV   V+NALV+ Y+ CGS+  +   F      +++SWN+I++ + ++ L   ALE F
Sbjct: 336 YQDVG--VSNALVNMYAKCGSIKNSYDVFRRTSDRNLVSWNTIIAAFGNHGLGARALEHF 393

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRT-----GNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
            +M+     P   +FV  L   +       G VYF      Y      +H      S L 
Sbjct: 394 EKMKTVGIHPDSVTFVGLLTACNHAGLVEEGQVYFNSMEEAYGIFPNIEHF-----SCLI 448

Query: 357 DMYGKCNVIESSVAVFESAP 376
           D+ G+   ++ +    E  P
Sbjct: 449 DLLGRAGRLQEAEEYMEKLP 468


>gi|297831842|ref|XP_002883803.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329643|gb|EFH60062.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 697

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 172/620 (27%), Positives = 306/620 (49%), Gaps = 68/620 (10%)

Query: 110 ASTFSSVLSVCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +S F+ +L  C         ++ +H  V+  GF   ++I + L+D Y + G       LF
Sbjct: 19  SSPFAKLLDSCIKLKLSAIDVRCVHASVIKSGFSNEVFIQNRLIDAYAKCGSLEDGRQLF 78

Query: 169 DELPERNL-------------------------------ATWNLMLRAFCELSRPDEVLR 197
           D++P+RN+                                TWN M+  F +  R +E L 
Sbjct: 79  DKMPQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALY 138

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
            +  M  EG   N  +F   +  CS    ++ G Q+HS + K   +  ++++ +ALVD Y
Sbjct: 139 YFAMMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLS-DVYIGSALVDMY 197

Query: 258 SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
           S CG++ +A++ FD +   +V+SWNS+++ Y       +AL++F  M      P   +  
Sbjct: 198 SKCGNVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLA 257

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP- 376
             ++  +    +  G+++H  V K+      + + +A  DMY KC+ I+ +  +F+S P 
Sbjct: 258 SVISACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPI 317

Query: 377 ------------------------------GRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
                                          R++   N+L+     +G  ++A+ +F  +
Sbjct: 318 RNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLL 377

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCR----LLHCCAIKSGFESNIAVSCSLMDAY 462
             E +     T +  LKA +  A  +LG       L H    +SG E +I V  SL+D Y
Sbjct: 378 KRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMY 437

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG +E  + VF K+   + V + +++ G+++NG G EAL++   M+  G  PD +T +
Sbjct: 438 VKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMI 497

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C H+G V+EG+  F+SM   +G+   R HY+CM+D+LGRAG L++A+ ++++ P 
Sbjct: 498 GVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEMPV 557

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D ++W SLL +C+VH N  +G+ VA  L E+E  +   Y  +SN Y+E+G++  +M +
Sbjct: 558 QPDSVIWGSLLAACKVHRNITLGKYVAEKLFEVETSNSGPYVLLSNMYAELGKWGDAMNV 617

Query: 643 RETALARKLTRDIGHSLIEV 662
           R+      +T+  G S I++
Sbjct: 618 RKLMRKEGVTKQPGCSWIKI 637



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 129/494 (26%), Positives = 229/494 (46%), Gaps = 50/494 (10%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ N+++ N  +    K G L+ A  LF  MP RD  T+N ++SG  +    ++ALY + 
Sbjct: 82  PQRNVFTWNSVVTGLTKLGFLDEADSLFRSMPERDQCTWNSMVSGFAQHDRCEEALYYFA 141

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G   +  TF+S LS CS       G+QIH  +       ++YIGS LVD+Y + G
Sbjct: 142 MMHKEGFVLNEYTFASGLSACSGLNDMNRGVQIHSLIAKSPCLSDVYIGSALVDMYSKCG 201

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FDE+ +RN+ +WN ++  + +     E L+++  M    VEP+ ++   ++ 
Sbjct: 202 NVNDAQQVFDEMGDRNVVSWNSLITCYEQNGPAVEALKVFQVMLESWVEPDEVTLASVIS 261

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    +  G+++H+ V+K+  +  +I ++NA VD Y+ C  + EA+  FD +P+ +VI
Sbjct: 262 ACASLSAIKVGQEVHARVVKMDKLRNDIILSNAFVDMYAKCSRIKEARFIFDSMPIRNVI 321

Query: 280 -------------------------------SWNSIVSIYADYDLIFDALELFFRMQLCR 308
                                          SWN++++ Y       +AL LF  ++   
Sbjct: 322 AETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFCLLKRES 381

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-----DHGSVHVQSALTDMYGKCN 363
             P+  +F   L   +   +++ G Q H +V K GF     +   + V ++L DMY KC 
Sbjct: 382 VCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLIDMYVKCG 441

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +E    VF     R     N+++     +G   +A+E+F  M+D G   D +T+   L 
Sbjct: 442 CVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHITMIGVLS 501

Query: 424 ALSVSASANLGS------CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           A   +     G        R      ++  +      +C ++D   R G +E +  + E+
Sbjct: 502 ACGHAGFVEEGRHYFSSMTRDFGVAPLRDHY------TC-MVDLLGRAGFLEEAKSIIEE 554

Query: 478 IP-SPNVVCFTSIM 490
           +P  P+ V + S++
Sbjct: 555 MPVQPDSVIWGSLL 568



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 59/254 (23%), Positives = 124/254 (48%), Gaps = 7/254 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N+ +    +  +  +    +A+ +F +M  R++V++N LI+G  +    ++AL L+ 
Sbjct: 316 PIRNVIAETSMVSGYAMAASTKAARLMFTKMAERNVVSWNALIAGYTQNGENEEALSLFC 375

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL------NLYIGSPLVD 153
            +    +  +  TF+++L  C++      G+Q H  VL  GF        ++++G+ L+D
Sbjct: 376 LLKRESVCPTHYTFANILKACADLADLHLGMQAHVHVLKHGFKFQSGEEDDIFVGNSLID 435

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y++ G       +F ++ ER+  +WN M+  F +    +E L ++ +M   G +P+ ++
Sbjct: 436 MYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALELFREMLDSGEKPDHIT 495

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++  C     ++EG+   S + +   V         +VD     G L EAK   + +
Sbjct: 496 MIGVLSACGHAGFVEEGRHYFSSMTRDFGVAPLRDHYTCMVDLLGRAGFLEEAKSIIEEM 555

Query: 274 PVD-DVISWNSIVS 286
           PV  D + W S+++
Sbjct: 556 PVQPDSVIWGSLLA 569



 Score = 63.5 bits (153), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 50/163 (30%), Positives = 80/163 (49%), Gaps = 15/163 (9%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q   + +I+  N  ID +VK G +     +F +M  RD V++N +I G  +  +  +AL 
Sbjct: 420 QSGEEDDIFVGNSLIDMYVKCGCVEEGYLVFRKMMERDCVSWNAMIIGFAQNGYGNEALE 479

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL----- 151
           L+ EM+  G K    T   VLS C +AGF  EG + +   ++  FG+     +PL     
Sbjct: 480 LFREMLDSGEKPDHITMIGVLSACGHAGFVEEG-RHYFSSMTRDFGV-----APLRDHYT 533

Query: 152 --VDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRAFCELSR 191
             VDL  R G    A  + +E+P + +   W  +L A C++ R
Sbjct: 534 CMVDLLGRAGFLEEAKSIIEEMPVQPDSVIWGSLLAA-CKVHR 575


>gi|302804548|ref|XP_002984026.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
 gi|300148378|gb|EFJ15038.1| hypothetical protein SELMODRAFT_30095 [Selaginella moellendorffii]
          Length = 745

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 175/623 (28%), Positives = 320/623 (51%), Gaps = 11/623 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + + +N  I  + K      A+++FD +  R+  ++++L+    +    ++AL +Y EMV
Sbjct: 1   DTFLANMIIQMYGKCKSPEDARQVFDRIKQRNAFSWSILVECYVQNAMYQEALEVYKEMV 60

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              I   A T SSVL+ C+      EG  +  +   LGF  ++ + + L+ L+ + G   
Sbjct: 61  RKEISIDAYTLSSVLAACTKLLDVEEGRMVQRKAEELGFEKDVVVATSLIHLFAKCGCLE 120

Query: 163 RALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A  +F  +   R++ +   M+ A+    + D  L  Y KM+++G+EP+  ++  ++  C
Sbjct: 121 EAESVFRSMGAMRDIISVTAMIGAYVRHGKNDLALDTYWKMRSQGLEPDAFTYAAILGAC 180

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S    L +GK +H H+++      NI V NAL+  Y+ CGSL ++K  F  + V DV+SW
Sbjct: 181 SSPDFLLDGKHIHKHILESKHFG-NISVRNALITMYAKCGSLKDSKSLFLTMDVKDVVSW 239

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++++ Y  Y    DA  LF RM      P I +F   L   +    +  G+ +H  +T 
Sbjct: 240 NAMIAAYTLYGHDKDAFSLFHRMCTLGHTPDIYTFSSILGACASPKRLEDGRMLHVRITA 299

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GFD     +Q+ L  M+ +C  +ES+   F S   + L   N+++ +       KDA+ 
Sbjct: 300 RGFDR-DFAMQNNLISMFTRCGSLESARRYFYSIEKKELGAWNTMLAAYAQFDKGKDALF 358

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSL 458
           ++  M+ EG   D  T S+      V + A+LG+ R    +H C+   GFE ++ +  +L
Sbjct: 359 LYKNMLLEGFTPDRFTFSSV-----VDSCASLGALREGKFIHECSTSCGFEKDVILGTAL 413

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           ++ Y++CG +  + + F+ I + +VV +++++   +++G   EAL++  +M  +G+  ++
Sbjct: 414 VNMYAKCGSLADAKKSFDGISNKDVVSWSAMIAASAQHGHAEEALELSHLMNLQGIAQNE 473

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VT   VL  C+H G + EG   F  +   +GI+ D ++    ID+LGRAG L +AE +L 
Sbjct: 474 VTASSVLHACSHGGRLYEGIDYFMGLSQDFGIERDEENTVGFIDLLGRAGWLKEAEHVLH 533

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P     +   +LL  C+VHG+   G+ +   ++ LEP +   Y  ++N Y+  G ++ 
Sbjct: 534 TMPFKVSFVALVTLLGGCKVHGDVRRGKALTKRIVALEPENPGSYVLLNNMYAAAGRWDD 593

Query: 639 SMQIRETALARKLTRDIGHSLIE 661
             ++R     + + R  G S IE
Sbjct: 594 VAKLRRYMRKKGVKRQTGCSSIE 616


>gi|328774761|gb|AEB39780.1| pentatricopeptide repeat protein 45 [Funaria hygrometrica]
          Length = 1097

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 171/625 (27%), Positives = 322/625 (51%), Gaps = 7/625 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++   N  +  + KSG ++ A+ +FD M  RD+ ++ ++I G  +    ++A  L+ +M
Sbjct: 353 LDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 412

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYT-EGIQI-HCRVLSLGFGLNLYIGSPLVDLYMRMG 159
             +G   + +T+ S+L+  + A     E +++ H      GF  +L IG+ L+ +Y + G
Sbjct: 413 QRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCG 472

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD + +R++ +WN M+    +     E   ++ +M+ EG+ P+  ++  ++ 
Sbjct: 473 SIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLN 532

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                  L+   ++H H ++ G +  +  V +A +  Y  CGS+ +A+  FD + V  V 
Sbjct: 533 THGSTDALEWVNEVHKHAVETGLIS-DFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVT 591

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WN+++   A      +AL LF +MQ     P   +F+  L+       + + K++H + 
Sbjct: 592 TWNAMIGGAAQQRCGREALSLFLQMQREGFIPDATTFINILSANVDEEALEWVKEVHSHA 651

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
           T  G     + V +AL   Y KC  ++ +  VF+    R++     ++  L   G   DA
Sbjct: 652 TDAGLV--DLRVGNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDA 709

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
              F  M+ EGI  D  T  + L A   +++  L   + +H  A+ +G  S++ V  +L+
Sbjct: 710 FSHFLQMLREGIVPDATTYVSILSA--CASTGALEWVKEVHNHAVSAGLVSDLRVGNALV 767

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y++CG I+ +  VF+ +   +V  +T ++ G +++G G EALD    M   G  P+  
Sbjct: 768 HMYAKCGSIDDARSVFDDMVERDVFSWTVMIGGLAQHGRGLEALDFFVKMKSEGFKPNGY 827

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +++ VL  C+H+G+V EG+  F SM   YGI+   +HY+CM+D+LGRAG+L++AE  +  
Sbjct: 828 SYVAVLTACSHAGLVDEGRRQFLSMTQDYGIEPTMEHYTCMVDLLGRAGLLEEAELFILN 887

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D   W +LL +C  +GN  +    A   ++L+P   + Y  +SN Y+  G++E  
Sbjct: 888 MPIEPDDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGKWEQK 947

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
           + +R     + + ++ G S IEV++
Sbjct: 948 LLVRSMMQRKGIRKEPGRSWIEVDN 972



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 129/488 (26%), Positives = 254/488 (52%), Gaps = 8/488 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y +N+ +  +++ G L  A+++FD++  +++  +  +I G  ++ H + A+ +YD+M 
Sbjct: 152 NLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYGHAEDAMRVYDKMR 211

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               + +  T+ S+L  C        G +IH  ++  GF  ++ + + LV++Y++ G   
Sbjct: 212 QECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIE 271

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD++ ERN+ +W +M+       R  E   ++ +M+ EG  PN  ++  ++   +
Sbjct: 272 DAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFIPNSYTYVSILNANA 331

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+  K++HSH +  G + +++ V NALV  Y+  GS+ +A+  FD +   D+ SW 
Sbjct: 332 SAGALEWVKEVHSHAVNAG-LALDLRVGNALVHMYAKSGSIDDARVVFDGMTERDIFSWT 390

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA--SRTGNVYFGKQIHGYVT 340
            ++   A +    +A  LF +MQ     P++ +++  LN +  + T  + + K +H +  
Sbjct: 391 VMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIASTSALEWVKVVHKHAE 450

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           + GF    + + +AL  MY KC  I+ +  VF+    R +   N++M  L  +G   +A 
Sbjct: 451 EAGFI-SDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMMGGLAQNGCGHEAF 509

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLM 459
            +F  M  EG+  D    +T L  L+   S + L     +H  A+++G  S+  V  + +
Sbjct: 510 TVFLQMQQEGLVPDS---TTYLSLLNTHGSTDALEWVNEVHKHAVETGLISDFRVGSAFI 566

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y RCG I+ +  +F+K+   +V  + +++ G ++   GREAL +   M + G IPD  
Sbjct: 567 HMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQRCGREALSLFLQMQREGFIPDAT 626

Query: 520 TFLCVLAG 527
           TF+ +L+ 
Sbjct: 627 TFINILSA 634



 Score =  215 bits (547), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 144/595 (24%), Positives = 289/595 (48%), Gaps = 21/595 (3%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q   Q ++      ++ +VK G +  A+ +FD+M  R+++++ ++I G   +   ++A +
Sbjct: 247 QSGFQSDVRVETALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFH 306

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L+ +M   G   ++ T+ S+L+  ++AG      ++H   ++ G  L+L +G+ LV +Y 
Sbjct: 307 LFLQMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAGLALDLRVGNALVHMYA 366

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A  +FD + ER++ +W +M+    +  R  E   ++ +M+  G  PN  ++  
Sbjct: 367 KSGSIDDARVVFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLS 426

Query: 217 MVRGCSIGML--LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
           ++   +I     L+  K +H H  + G++  ++ + NAL+  Y+ CGS+ +A+  FD + 
Sbjct: 427 ILNASAIASTSALEWVKVVHKHAEEAGFIS-DLRIGNALIHMYAKCGSIDDARLVFDGMC 485

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DVISWN+++   A      +A  +F +MQ     P   +++  LN    T  + +  +
Sbjct: 486 DRDVISWNAMMGGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLLNTHGSTDALEWVNE 545

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H +  + G       V SA   MY +C  I+ +  +F+    R +   N+++       
Sbjct: 546 VHKHAVETGLI-SDFRVGSAFIHMYIRCGSIDDARLLFDKLSVRHVTTWNAMIGGAAQQR 604

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             ++A+ +F  M  EG   D  T    L A +V   A L   + +H  A  +G   ++ V
Sbjct: 605 CGREALSLFLQMQREGFIPDATTFINILSA-NVDEEA-LEWVKEVHSHATDAGL-VDLRV 661

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+  YS+CG+++ + QVF+ +   NV  +T ++ G +++G G +A      M++ G+
Sbjct: 662 GNALVHTYSKCGNVKYAKQVFDDMVERNVTTWTMMIGGLAQHGCGHDAFSHFLQMLREGI 721

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           +PD  T++ +L+ C  +G ++  + V N   S  G+ +D +  + ++ M  + G +D A 
Sbjct: 722 VPDATTYVSILSACASTGALEWVKEVHNHAVSA-GLVSDLRVGNALVHMYAKCGSIDDAR 780

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
            +        D   W+ ++     HG              LE +DF V  +   F
Sbjct: 781 SVFDDMV-ERDVFSWTVMIGGLAQHGR------------GLEALDFFVKMKSEGF 822



 Score =  206 bits (525), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 137/511 (26%), Positives = 255/511 (49%), Gaps = 11/511 (2%)

Query: 75  MVTYNLLISGCGKFRH----PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           +V  N  + G  +  H     K A+ +    V  GI   + ++ ++L  C          
Sbjct: 79  LVCANASVDGAAEQTHNVITAKDAVAMLKIRVQQGIAIDSFSYVNILQRCLKQEDILLAK 138

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  ++  G   NLY+ + L+ +Y+R G    A  +FD+L ++N+  W  M+  + E  
Sbjct: 139 QVHVCIIKSGMEQNLYVANKLLRVYIRCGRLQCARQVFDKLLKKNIYIWTTMIGGYAEYG 198

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             ++ +R+Y+KM+ E  +PN +++  +++ C   + L  GK++H+H+I+ G+   ++ V 
Sbjct: 199 HAEDAMRVYDKMRQECGQPNEITYLSILKACCCPVNLKWGKKIHAHIIQSGF-QSDVRVE 257

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALV+ Y  CGS+ +A+  FD +   +VISW  ++   A Y    +A  LF +MQ     
Sbjct: 258 TALVNMYVKCGSIEDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHLFLQMQREGFI 317

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P+  ++V  LN  +  G + + K++H +    G     + V +AL  MY K   I+ +  
Sbjct: 318 PNSYTYVSILNANASAGALEWVKEVHSHAVNAGLAL-DLRVGNALVHMYAKSGSIDDARV 376

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF+    R +     ++  L   G  ++A  +F  M   G   +  T  + L A +++++
Sbjct: 377 VFDGMTERDIFSWTVMIGGLAQHGRGQEAFSLFLQMQRNGCLPNLTTYLSILNASAIAST 436

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           + L   +++H  A ++GF S++ +  +L+  Y++CG I+ +  VF+ +   +V+ + ++M
Sbjct: 437 SALEWVKVVHKHAEEAGFISDLRIGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMM 496

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY-- 548
            G ++NG G EA  +   M Q GL+PD  T+L +L   N  G     + V    K     
Sbjct: 497 GGLAQNGCGHEAFTVFLQMQQEGLVPDSTTYLSLL---NTHGSTDALEWVNEVHKHAVET 553

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           G+ +D +  S  I M  R G +D A  L  +
Sbjct: 554 GLISDFRVGSAFIHMYIRCGSIDDARLLFDK 584


>gi|449502637|ref|XP_004161700.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 184/675 (27%), Positives = 332/675 (49%), Gaps = 18/675 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP--QLNIYSSNRTIDDFVKSG 58
           M    L P  RT+  L   C  ++ L     +  YC  N    ++ Y     +  +++  
Sbjct: 152 MKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFD 211

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            + S  ++F  M  R++V++N +I+G        +AL LY  M+  GIK  A T   V+ 
Sbjct: 212 AVLS-HRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQ 270

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C+  G    G+Q+H   +      +L+I + L+++Y   G    +  LF+ +P  + A 
Sbjct: 271 ACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAAL 330

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG----KQLH 234
           WN M+ ++       E + ++ KM+ E ++ +  +   M+  C+    L++G    + LH
Sbjct: 331 WNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCND---LNDGSIWGRGLH 387

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           +H +K G ++++ ++ NAL+  Y     +  A+  F+ +   DVISWN+++S +A     
Sbjct: 388 AHAMKSG-IELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFR 446

Query: 295 FDALELFFRMQLCRKRPSIRSF--VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
             A ELF  M  C       S+  V  L F     ++ FG+ IHG+  K G +  +  + 
Sbjct: 447 AKAFELFLMM--CESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINT-SLN 503

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           ++LT+MY  C    ++  +F   P R L   NSL++S + + N   A+ +F  M+ E + 
Sbjct: 504 TSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LE 562

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            + VT+   L + +  A   LG C   +    +   E + +++ + +  Y+RCG ++ + 
Sbjct: 563 PNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAE 622

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           ++F  + + ++V + +++ GY  +G GR+A      M+  G  P+ V+F  VL+ C+HSG
Sbjct: 623 KIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSG 682

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +   G  +F+SM   +GI     HY CM+D+LGR G   +A   +   P   D  +W +L
Sbjct: 683 LTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRAL 742

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L SC++  N  +   +   L+ELEP +   +  +SN Y+  G +   +QIR+    R L 
Sbjct: 743 LSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLG 802

Query: 653 RDIGHSLIEV-NSCH 666
           +  G S I + N  H
Sbjct: 803 KPPGTSWIVIGNQVH 817



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 154/555 (27%), Positives = 280/555 (50%), Gaps = 14/555 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D + K G +  A K+F EMP RD+V++N LISG       K+A+ L+ EM   G+  ++
Sbjct: 102 VDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNS 161

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            T  ++L  C        G +IH   L  G F ++ Y+G+ LV  YMR   +V +  +F 
Sbjct: 162 RTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFS 220

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            +  RN+ +WN ++  F  +    + L++Y+ M  EG++ + ++   +++ C+    L  
Sbjct: 221 LMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRL 280

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G QLH   IK   ++ ++F+ NAL++ YS  GSL  +   F+ +P  D   WNS++S Y 
Sbjct: 281 GMQLHQLAIKFNLIN-DLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYI 339

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS--RTGNVYFGKQIHGYVTKLGFDHG 347
            +    +A+ LF +M+L R +  +R+    L+  +    G+++ G+ +H +  K G +  
Sbjct: 340 GFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIW-GRGLHAHAMKSGIELD 398

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           + ++ +AL  MY K N I ++  VFE   G  +   N+++++   S     A E+F  M 
Sbjct: 399 A-YLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMC 457

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           +  I  +  T+ + L      +    G  R +H  AIK+G E N +++ SL + Y  CG 
Sbjct: 458 ESEIKFNSYTIVSLLAFCKDGSDLVFG--RSIHGFAIKNGLEINTSLNTSLTEMYINCGD 515

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
              +  +F + P  ++V + S+++ Y +N    +AL +   MI   L P+ VT + +L  
Sbjct: 516 ERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTS 574

Query: 528 CNHSGMVKEGQLV--FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           C     +  GQ +  + + + V  ++ D    +  I M  R G L  AE++   T     
Sbjct: 575 CTQLAHLPLGQCLHAYTTRREV-SLEMDASLANAFITMYARCGKLQYAEKIF-CTLQTRS 632

Query: 586 CMMWSSLLRSCRVHG 600
            + W++++    +HG
Sbjct: 633 IVSWNAMITGYGMHG 647



 Score =  164 bits (415), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/550 (24%), Positives = 264/550 (48%), Gaps = 24/550 (4%)

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +N +I    K ++    L  Y +M S GI   ++T   VL  C        G++IH  + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSCIR 87

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR 197
            L    ++ +G+ LVD Y + G    A  +F E+PER+L +WN ++  +       E + 
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           ++ +MK  G+ PN  +   ++  C   + L  G+++H + ++ G  D++ +V  ALV FY
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY 207

Query: 258 SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
               +++ + + F  + V +++SWN+I++ + +      AL+L+  M +   +    + +
Sbjct: 208 MRFDAVL-SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTML 266

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             +   +  G +  G Q+H    K    +  + + +AL +MY     +ESS A+F + P 
Sbjct: 267 VVIQACAEYGCLRLGMQLHQLAIKFNLIN-DLFILNALLNMYSDNGSLESSWALFNAVPT 325

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC- 436
                 NS+++S +  G   +A+ +F  M  E I  D  T++     LS+    N GS  
Sbjct: 326 SDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIM---LSLCNDLNDGSIW 382

Query: 437 -RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            R LH  A+KSG E +  +  +L+  Y +   I  +  VFEK+   +V+ + ++++ +++
Sbjct: 383 GRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQ 442

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ-LVFNSMKSVY------ 548
           +    +A ++  +M +  +  +  T + +LA C      K+G  LVF   +S++      
Sbjct: 443 SMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC------KDGSDLVFG--RSIHGFAIKN 494

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           G++ +    + + +M    G    A  +  + P   D + W+SL+ S   + N      +
Sbjct: 495 GLEINTSLNTSLTEMYINCGDERAATNMFTRCP-QRDLVSWNSLISSYIKNDNAGKALLL 553

Query: 609 AN-ILMELEP 617
            N ++ ELEP
Sbjct: 554 FNHMISELEP 563


>gi|15236431|ref|NP_192561.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208454|sp|Q9SUF9.1|PP305_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g08210
 gi|5262194|emb|CAB45791.1| putative protein [Arabidopsis thaliana]
 gi|7267461|emb|CAB81157.1| putative protein [Arabidopsis thaliana]
 gi|332657209|gb|AEE82609.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 686

 Score =  279 bits (713), Expect = 4e-72,   Method: Compositional matrix adjust.
 Identities = 195/659 (29%), Positives = 340/659 (51%), Gaps = 53/659 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++ +N  I  +V    L+ A K+FDEM  R++VT+  ++SG      P +A+ LY  M+
Sbjct: 39  NVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTWTTMVSGYTSDGKPNKAIELYRRML 98

Query: 103 SHGIKESASTF--SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG- 159
               +E+A+ F  S+VL  C   G    GI ++ R+       ++ + + +VD+Y++ G 
Sbjct: 99  DSE-EEAANEFMYSAVLKACGLVGDIQLGILVYERIGKENLRGDVVLMNSVVDMYVKNGR 157

Query: 160 -------------PSV-----------------RALDLFDELPERNLATWNLMLRAFCEL 189
                        PS                   A+ LF  +P+ N+ +WN ++  F + 
Sbjct: 158 LIEANSSFKEILRPSSTSWNTLISGYCKAGLMDEAVTLFHRMPQPNVVSWNCLISGFVDK 217

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
             P   L    +M+ EG+  +G +    ++ CS G LL  GKQLH  V+K G ++ + F 
Sbjct: 218 GSP-RALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGKQLHCCVVKSG-LESSPFA 275

Query: 250 ANALVDFYSACGSLIEAKKSF--DFIPVDDVIS-WNSIVS---IYADYDLIFDALELFFR 303
            +AL+D YS CGSLI A   F  + + V+  ++ WNS++S   I  + +     L   ++
Sbjct: 276 ISALIDMYSNCGSLIYAADVFHQEKLAVNSSVAVWNSMLSGFLINEENEAALWLLLQIYQ 335

Query: 304 MQLCRKRPSIRSFVEF-LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
             LC    ++   ++  +N+     N+  G Q+H  V   G++   + V S L D++   
Sbjct: 336 SDLCFDSYTLSGALKICINYV----NLRLGLQVHSLVVVSGYELDYI-VGSILVDLHANV 390

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             I+ +  +F   P + +   + L+   + SG    A  +F  ++  G+  D+  +S  L
Sbjct: 391 GNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSNIL 450

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           K    S+ A+LG  + +H   IK G+ES    + +L+D Y +CG I+    +F+ +   +
Sbjct: 451 KV--CSSLASLGWGKQIHGLCIKKGYESEPVTATALVDMYVKCGEIDNGVVLFDGMLERD 508

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           VV +T I+ G+ +NG   EA      MI  G+ P+KVTFL +L+ C HSG+++E +    
Sbjct: 509 VVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEPNKVTFLGLLSACRHSGLLEEARSTLE 568

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           +MKS YG++   +HY C++D+LG+AG+  +A EL+ + P   D  +W+SLL +C  H N 
Sbjct: 569 TMKSEYGLEPYLEHYYCVVDLLGQAGLFQEANELINKMPLEPDKTIWTSLLTACGTHKNA 628

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL-TRDIGHSLI 660
            +   +A  L++  P D +VY+ +SN Y+ +G ++   ++RE   A+KL  ++ G S I
Sbjct: 629 GLVTVIAEKLLKGFPDDPSVYTSLSNAYATLGMWDQLSKVREA--AKKLGAKESGMSWI 685



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/492 (23%), Positives = 220/492 (44%), Gaps = 47/492 (9%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C     +  G  I   V+  G   N++I + ++ +Y+       A  +FDE+ ERN+ TW
Sbjct: 15  CGKVQAFKRGESIQAHVIKQGISQNVFIANNVISMYVDFRLLSDAHKVFDEMSERNIVTW 74

Query: 180 NLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
             M+  +    +P++ + +Y +M  +E    N   +  +++ C +   +  G  ++  + 
Sbjct: 75  TTMVSGYTSDGKPNKAIELYRRMLDSEEEAANEFMYSAVLKACGLVGDIQLGILVYERIG 134

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K   +  ++ + N++VD Y   G LIEA  SF  I      SWN+++S Y    L+ +A+
Sbjct: 135 KEN-LRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCKAGLMDEAV 193

Query: 299 ELFFRMQLCRKRPSIRSF---------------VEFLNFASRTGNVY------------- 330
            LF RM     +P++ S+               +EFL    R G V              
Sbjct: 194 TLFHRM----PQPNVVSWNCLISGFVDKGSPRALEFLVRMQREGLVLDGFALPCGLKACS 249

Query: 331 ------FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES---APGRSLE 381
                  GKQ+H  V K G +     + SAL DMY  C  +  +  VF     A   S+ 
Sbjct: 250 FGGLLTMGKQLHCCVVKSGLESSPFAI-SALIDMYSNCGSLIYAADVFHQEKLAVNSSVA 308

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             NS+++  L +   + A+ +   +    +  D  TLS  LK      +  LG    +H 
Sbjct: 309 VWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLG--LQVHS 366

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             + SG+E +  V   L+D ++  G+I+ +H++F ++P+ +++ F+ ++ G  ++G    
Sbjct: 367 LVVVSGYELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSL 426

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A  +   +I+ GL  D+     +L  C+    +  G+ + + +    G +++    + ++
Sbjct: 427 AFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQI-HGLCIKKGYESEPVTATALV 485

Query: 562 DMLGRAGILDKA 573
           DM  + G +D  
Sbjct: 486 DMYVKCGEIDNG 497



 Score =  120 bits (301), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 118/501 (23%), Positives = 216/501 (43%), Gaps = 45/501 (8%)

Query: 30  LLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL----------------------------- 60
           L+ +   + N + ++   N  +D +VK+G L                             
Sbjct: 128 LVYERIGKENLRGDVVLMNSVVDMYVKNGRLIEANSSFKEILRPSSTSWNTLISGYCKAG 187

Query: 61  --NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
             + A  LF  MP  ++V++N LISG      P+ AL     M   G+          L 
Sbjct: 188 LMDEAVTLFHRMPQPNVVSWNCLISGFVDKGSPR-ALEFLVRMQREGLVLDGFALPCGLK 246

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP---ERN 175
            CS  G  T G Q+HC V+  G   + +  S L+D+Y   G  + A D+F +       +
Sbjct: 247 ACSFGGLLTMGKQLHCCVVKSGLESSPFAISALIDMYSNCGSLIYAADVFHQEKLAVNSS 306

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           +A WN ML  F      +  L +  ++    +  +  +    ++ C   + L  G Q+HS
Sbjct: 307 VAVWNSMLSGFLINEENEAALWLLLQIYQSDLCFDSYTLSGALKICINYVNLRLGLQVHS 366

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            V+  G+ +++  V + LVD ++  G++ +A K F  +P  D+I+++ ++         F
Sbjct: 367 LVVVSGY-ELDYIVGSILVDLHANVGNIQDAHKLFHRLPNKDIIAFSGLIRGCVKSG--F 423

Query: 296 DALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
           ++L  +   +L +       F+    L   S   ++ +GKQIHG   K G++   V   +
Sbjct: 424 NSLAFYLFRELIKLGLDADQFIVSNILKVCSSLASLGWGKQIHGLCIKKGYESEPV-TAT 482

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL DMY KC  I++ V +F+    R +     ++     +G +++A   F  M++ GI  
Sbjct: 483 ALVDMYVKCGEIDNGVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFRYFHKMINIGIEP 542

Query: 414 DEVTLSTTLKALSVSASANLGSCR-LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           ++VT    L A     S  L   R  L     + G E  +     ++D   + G  + ++
Sbjct: 543 NKVTFLGLLSA--CRHSGLLEEARSTLETMKSEYGLEPYLEHYYCVVDLLGQAGLFQEAN 600

Query: 473 QVFEKIP-SPNVVCFTSIMNG 492
           ++  K+P  P+   +TS++  
Sbjct: 601 ELINKMPLEPDKTIWTSLLTA 621


>gi|449448940|ref|XP_004142223.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g02330-like [Cucumis sativus]
          Length = 847

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 184/675 (27%), Positives = 332/675 (49%), Gaps = 18/675 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP--QLNIYSSNRTIDDFVKSG 58
           M    L P  RT+  L   C  ++ L     +  YC  N    ++ Y     +  +++  
Sbjct: 152 MKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRFD 211

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            + S  ++F  M  R++V++N +I+G        +AL LY  M+  GIK  A T   V+ 
Sbjct: 212 AVLS-HRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQ 270

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C+  G    G+Q+H   +      +L+I + L+++Y   G    +  LF+ +P  + A 
Sbjct: 271 ACAEYGCLRLGMQLHQLAIKFNLINDLFILNALLNMYSDNGSLESSWALFNAVPTSDAAL 330

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG----KQLH 234
           WN M+ ++       E + ++ KM+ E ++ +  +   M+  C+    L++G    + LH
Sbjct: 331 WNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIMLSLCND---LNDGSIWGRGLH 387

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           +H +K G ++++ ++ NAL+  Y     +  A+  F+ +   DVISWN+++S +A     
Sbjct: 388 AHAMKSG-IELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFR 446

Query: 295 FDALELFFRMQLCRKRPSIRSF--VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
             A ELF  M  C       S+  V  L F     ++ FG+ IHG+  K G +  +  + 
Sbjct: 447 AKAFELFLMM--CESEIKFNSYTIVSLLAFCKDGSDLVFGRSIHGFAIKNGLEINT-SLN 503

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           ++LT+MY  C    ++  +F   P R L   NSL++S + + N   A+ +F  M+ E + 
Sbjct: 504 TSLTEMYINCGDERAATNMFTRCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LE 562

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            + VT+   L + +  A   LG C   +    +   E + +++ + +  Y+RCG ++ + 
Sbjct: 563 PNSVTIINILTSCTQLAHLPLGQCLHAYTTRREVSLEMDASLANAFITMYARCGKLQYAE 622

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           ++F  + + ++V + +++ GY  +G GR+A      M+  G  P+ V+F  VL+ C+HSG
Sbjct: 623 KIFCTLQTRSIVSWNAMITGYGMHGRGRDATLAFAQMLDDGFKPNNVSFASVLSACSHSG 682

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +   G  +F+SM   +GI     HY CM+D+LGR G   +A   +   P   D  +W +L
Sbjct: 683 LTVTGLQLFHSMVRDFGIAPQLTHYGCMVDLLGRGGHFSEAIAFINSMPIEPDASIWRAL 742

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L SC++  N  +   +   L+ELEP +   +  +SN Y+  G +   +QIR+    R L 
Sbjct: 743 LSSCQIKSNNKLLETIFGKLVELEPSNPGNFILLSNIYAAAGLWSEVVQIRKWLRERGLG 802

Query: 653 RDIGHSLIEV-NSCH 666
           +  G S I + N  H
Sbjct: 803 KPPGTSWIVIGNQVH 817



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 161/606 (26%), Positives = 299/606 (49%), Gaps = 15/606 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGH 59
           M S  + P   T+  +   C  +  + + + + S+ +    +N +      +D + K G 
Sbjct: 51  MESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIRGLDLINDVRVGTALVDFYCKCGL 110

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A K+F EMP RD+V++N LISG       K+A+ L+ EM   G+  ++ T  ++L  
Sbjct: 111 VAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVLLFVEMKKAGLTPNSRTVVALLLA 170

Query: 120 CSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           C        G +IH   L  G F ++ Y+G+ LV  YMR   +V +  +F  +  RN+ +
Sbjct: 171 CGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFYMRF-DAVLSHRVFSLMLVRNIVS 229

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN ++  F  +    + L++Y+ M  EG++ + ++   +++ C+    L  G QLH   I
Sbjct: 230 WNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTMLVVIQACAEYGCLRLGMQLHQLAI 289

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K   ++ ++F+ NAL++ YS  GSL  +   F+ +P  D   WNS++S Y  +    +A+
Sbjct: 290 KFNLIN-DLFILNALLNMYSDNGSLESSWALFNAVPTSDAALWNSMISSYIGFGFHAEAI 348

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFAS--RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
            LF +M+L R +  +R+    L+  +    G+++ G+ +H +  K G +  + ++ +AL 
Sbjct: 349 ALFIKMRLERIKEDVRTIAIMLSLCNDLNDGSIW-GRGLHAHAMKSGIELDA-YLGNALL 406

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY K N I ++  VFE   G  +   N+++++   S     A E+F  M +  I  +  
Sbjct: 407 SMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQSMFRAKAFELFLMMCESEIKFNSY 466

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T+ + L      +    G  R +H  AIK+G E N +++ SL + Y  CG    +  +F 
Sbjct: 467 TIVSLLAFCKDGSDLVFG--RSIHGFAIKNGLEINTSLNTSLTEMYINCGDERAATNMFT 524

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
           + P  ++V + S+++ Y +N    +AL +   MI   L P+ VT + +L  C     +  
Sbjct: 525 RCPQRDLVSWNSLISSYIKNDNAGKALLLFNHMISE-LEPNSVTIINILTSCTQLAHLPL 583

Query: 537 GQLV--FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           GQ +  + + + V  ++ D    +  I M  R G L  AE++   T      + W++++ 
Sbjct: 584 GQCLHAYTTRREV-SLEMDASLANAFITMYARCGKLQYAEKIF-CTLQTRSIVSWNAMIT 641

Query: 595 SCRVHG 600
              +HG
Sbjct: 642 GYGMHG 647



 Score =  165 bits (417), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 135/550 (24%), Positives = 264/550 (48%), Gaps = 24/550 (4%)

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +N +I    K ++    L  Y +M S GI   ++T   VL  C        G++IH  + 
Sbjct: 28  WNSIIKHHTKLKNDHAILSTYTQMESLGITPDSATMPLVLKACGRLNAIGNGVRIHSFIR 87

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR 197
            L    ++ +G+ LVD Y + G    A  +F E+PER+L +WN ++  +       E + 
Sbjct: 88  GLDLINDVRVGTALVDFYCKCGLVAEASKVFVEMPERDLVSWNALISGYVGCLCYKEAVL 147

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           ++ +MK  G+ PN  +   ++  C   + L  G+++H + ++ G  D++ +V  ALV FY
Sbjct: 148 LFVEMKKAGLTPNSRTVVALLLACGEMLELRLGQEIHGYCLRNGLFDMDAYVGTALVGFY 207

Query: 258 SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
               +++ + + F  + V +++SWN+I++ + +      AL+L+  M +   +    + +
Sbjct: 208 MRFDAVL-SHRVFSLMLVRNIVSWNAIITGFLNVGDCAKALKLYSSMLIEGIKFDAVTML 266

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             +   +  G +  G Q+H    K    +  + + +AL +MY     +ESS A+F + P 
Sbjct: 267 VVIQACAEYGCLRLGMQLHQLAIKFNLIN-DLFILNALLNMYSDNGSLESSWALFNAVPT 325

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC- 436
                 NS+++S +  G   +A+ +F  M  E I  D  T++     LS+    N GS  
Sbjct: 326 SDAALWNSMISSYIGFGFHAEAIALFIKMRLERIKEDVRTIAIM---LSLCNDLNDGSIW 382

Query: 437 -RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            R LH  A+KSG E +  +  +L+  Y +   I  +  VFEK+   +V+ + ++++ +++
Sbjct: 383 GRGLHAHAMKSGIELDAYLGNALLSMYVKHNQITAAQYVFEKMRGLDVISWNTMISAFAQ 442

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ-LVFNSMKSVY------ 548
           +    +A ++  +M +  +  +  T + +LA C      K+G  LVF   +S++      
Sbjct: 443 SMFRAKAFELFLMMCESEIKFNSYTIVSLLAFC------KDGSDLVFG--RSIHGFAIKN 494

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           G++ +    + + +M    G    A  +  + P   D + W+SL+ S   + N      +
Sbjct: 495 GLEINTSLNTSLTEMYINCGDERAATNMFTRCP-QRDLVSWNSLISSYIKNDNAGKALLL 553

Query: 609 AN-ILMELEP 617
            N ++ ELEP
Sbjct: 554 FNHMISELEP 563


>gi|297798624|ref|XP_002867196.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313032|gb|EFH43455.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 997

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 194/647 (29%), Positives = 327/647 (50%), Gaps = 20/647 (3%)

Query: 28  SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK 87
           SS    S   PN ++ +   +R   D  ++G + S +   D     ++++ N ++SG   
Sbjct: 241 SSAFHTSGLHPN-EITLRLLSRISGDDSEAGQVKSFENGNDASAVSEIISRNKILSGYLH 299

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
                  L  + +MV   ++    TF  VL+          G Q+HC  L LG  L L +
Sbjct: 300 AGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLALGQQVHCMALKLGLDLMLTV 359

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            + L+++Y ++     A  +F+ + ER+L +WN ++    +     E + ++ ++   G+
Sbjct: 360 SNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIAQSDLEVEAVCLFMQLLRCGL 419

Query: 208 EPNGLSFCYMVRGCSIGMLLDEG----KQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
           +P+  +   +++  S    L EG    KQ+H H IK   V  + FV+ AL+D YS    +
Sbjct: 420 KPDHYTMTSVLKAASS---LPEGLSLSKQIHVHAIKTNNV-ADSFVSTALIDAYSRNRCM 475

Query: 264 IEAKKSF---DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
            EA+  F   +F    D+++WN+++S Y         LELF  M    +R    +    L
Sbjct: 476 KEAEVLFGRNNF----DLVAWNAMMSGYTQSHDGHKTLELFALMHKQGERSDDFTLATVL 531

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
                   +  GKQ+H Y  K G+D   + V S + DMY KC  + ++   F+S P    
Sbjct: 532 KTCGFLFAINQGKQVHAYAIKSGYDL-DLWVSSGILDMYVKCGDMSAAQFAFDSIPVPDD 590

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
               +L++  + +G  + A+ +F  M   G+  DE T++T  KA S   +   G  R +H
Sbjct: 591 VAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG--RQIH 648

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             A+K    S+  V  SL+D Y++CG I+ ++ +F++I   N+  + +++ G +++G G+
Sbjct: 649 ANALKLNCTSDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQHGEGK 708

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
           EAL + + M   G+ PDKVTF+ VL+ C+HSG+V E      SM   YGI  + +HYSC+
Sbjct: 709 EALQLFKQMESLGIKPDKVTFIGVLSACSHSGLVSEAYKYIRSMHRDYGIKPEIEHYSCL 768

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620
            D LGRAG++ +AE L+          M+ +LL +CRV G+   G+RVA  L+ELEP+D 
Sbjct: 769 ADALGRAGLVKEAENLIDSMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELEPLDS 828

Query: 621 AVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           + Y  +SN Y+   +++     R      K+ +D G S IEV N  H
Sbjct: 829 SAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 875



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 161/636 (25%), Positives = 292/636 (45%), Gaps = 52/636 (8%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI-----SGCGKFRHP 91
           + NP+   +  N  I  + K G L  A+++FD+MP RD+V++N ++     S  G   + 
Sbjct: 76  EENPER--FLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEGVVENV 133

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           K+A  L+  +    +  S  T S +L +C ++G+       H     +G   + ++   L
Sbjct: 134 KEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGLDGDDFVAGAL 193

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           V++Y++ G       LF+E+P R++  WNLML+A+ E+   +E + + +     G+ PN 
Sbjct: 194 VNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTSGLHPNE 253

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   + R        D+                            S  G +   +   D
Sbjct: 254 ITLRLLSRISG-----DD----------------------------SEAGQVKSFENGND 280

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
              V ++IS N I+S Y         L+ F  M          +F+  L  A R  ++  
Sbjct: 281 ASAVSEIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLATAVRLDSLAL 340

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+Q+H    KLG D   + V ++L +MY K   I  +  VF +   R L   NS++  + 
Sbjct: 341 GQQVHCMALKLGLDL-MLTVSNSLINMYCKLRKIGLARTVFNNMSERDLISWNSVIAGIA 399

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            S    +AV +F  ++  G+  D  T+++ LKA S S    L   + +H  AIK+   ++
Sbjct: 400 QSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAAS-SLPEGLSLSKQIHVHAIKTNNVAD 458

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             VS +L+DAYSR   ++ +  +F +  + ++V + ++M+GY+++  G + L++  +M +
Sbjct: 459 SFVSTALIDAYSRNRCMKEAEVLFGR-NNFDLVAWNAMMSGYTQSHDGHKTLELFALMHK 517

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGIL 570
           +G   D  T   VL  C     + +G+ V   ++KS  G D D    S ++DM  + G +
Sbjct: 518 QGERSDDFTLATVLKTCGFLFAINQGKQVHAYAIKS--GYDLDLWVSSGILDMYVKCGDM 575

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI--LMELEPVDFAVYSQVSN 628
             A+      P   D + W++L+  C  +G E     V +   LM + P +F + + ++ 
Sbjct: 576 SAAQFAFDSIPVPDD-VAWTTLISGCIENGEEERALHVFSQMRLMGVLPDEFTI-ATLAK 633

Query: 629 FYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
             S +   E   QI   AL    T D  +G SL+++
Sbjct: 634 ASSCLTALEQGRQIHANALKLNCTSDPFVGTSLVDM 669



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 107/471 (22%), Positives = 212/471 (45%), Gaps = 53/471 (11%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H R+L+L      ++ + L+ +Y + G    A  +FD++PER+L +WN +L A+ + S  
Sbjct: 69  HARILALEENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYAQSSEG 128

Query: 193 -----DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 E   ++  ++ + V  + ++   M++ C     +   +  H +  K+G +D + 
Sbjct: 129 VVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIG-LDGDD 187

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL---FFRM 304
           FVA ALV+ Y   G + E +  F+ +P  DV+ WN ++  Y +     +A++L   F   
Sbjct: 188 FVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHTS 247

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
            L     ++R         S  G V              F++G  +  SA++++  +   
Sbjct: 248 GLHPNEITLRLLSRISGDDSEAGQVK------------SFENG--NDASAVSEIISR--- 290

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
                              N +++  LH+G     ++ F  MV+  +  D+VT    L  
Sbjct: 291 -------------------NKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILVLAT 331

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
                S  LG  + +HC A+K G +  + VS SL++ Y +   I L+  VF  +   +++
Sbjct: 332 AVRLDSLALG--QQVHCMALKLGLDLMLTVSNSLINMYCKLRKIGLARTVFNNMSERDLI 389

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH--SGMVKEGQLVFN 542
            + S++ G +++ +  EA+ +   +++ GL PD  T   VL   +    G+    Q+  +
Sbjct: 390 SWNSVIAGIAQSDLEVEAVCLFMQLLRCGLKPDHYTMTSVLKAASSLPEGLSLSKQIHVH 449

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           ++K+     AD    + +ID   R   + +AE L  +     D + W++++
Sbjct: 450 AIKT--NNVADSFVSTALIDAYSRNRCMKEAEVLFGRN--NFDLVAWNAMM 496



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 79/316 (25%), Positives = 132/316 (41%), Gaps = 41/316 (12%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GK  H+ ++ L   +   F+ N L+  YS CGSL  A++ FD +P  D++SWNSI++ YA
Sbjct: 65  GKCTHARILALE-ENPERFLVNNLISMYSKCGSLTYARRVFDKMPERDLVSWNSILAAYA 123

Query: 290 DYD--LIFDALELFFRMQLCRKR---PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
                ++ +  E F   ++ R+     S  +    L     +G V   +  HGY  K+G 
Sbjct: 124 QSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVCASESFHGYACKIGL 183

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D G   V  AL ++Y K   ++    +FE  P R +   N ++ + L  G  ++A+++  
Sbjct: 184 D-GDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSS 242

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
                G+  +E+TL    +     + A            +KS    N A + S       
Sbjct: 243 AFHTSGLHPNEITLRLLSRISGDDSEAG----------QVKSFENGNDASAVS------- 285

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
                             ++    I++GY   G     L     M++  L  D+VTF+ V
Sbjct: 286 -----------------EIISRNKILSGYLHAGQYSALLKCFMDMVESDLECDQVTFILV 328

Query: 525 LAGCNHSGMVKEGQLV 540
           LA       +  GQ V
Sbjct: 329 LATAVRLDSLALGQQV 344



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 54/208 (25%), Positives = 95/208 (45%), Gaps = 8/208 (3%)

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
           FL  A  T ++  GK  H  +  L  +     V + L  MY KC  +  +  VF+  P R
Sbjct: 52  FLRDAISTSDLMLGKCTHARILALEENPERFLVNN-LISMYSKCGSLTYARRVFDKMPER 110

Query: 379 SLECCNSLMTSLLHSG-----NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
            L   NS++ +   S      N+K+A  +F  +  + +    +TLS  LK      S  +
Sbjct: 111 DLVSWNSILAAYAQSSEGVVENVKEAFLLFRILRQDVVYTSRMTLSPMLKL--CLHSGYV 168

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
            +    H  A K G + +  V+ +L++ Y + G ++    +FE++P  +VV +  ++  Y
Sbjct: 169 CASESFHGYACKIGLDGDDFVAGALVNIYLKFGKVKEGRVLFEEMPYRDVVLWNLMLKAY 228

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTF 521
              G   EA+D+       GL P+++T 
Sbjct: 229 LEMGFKEEAIDLSSAFHTSGLHPNEITL 256


>gi|356529693|ref|XP_003533423.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Glycine max]
          Length = 676

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 164/551 (29%), Positives = 299/551 (54%), Gaps = 5/551 (0%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +SS+++  ++    T    +H  V+  GF  + ++G  L+D Y++ G    A  LFDELP
Sbjct: 4   YSSLIAQSAHTKSLTTLRAVHTNVIKSGFSYS-FLGHKLIDGYIKCGSLAEARKLFDELP 62

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            R++ TWN M+ +     +  E +  Y  M  EGV P+  +F  + +  S   L+  G++
Sbjct: 63  SRHIVTWNSMISSHISHGKSKEAVEFYGNMLMEGVLPDAYTFSAISKAFSQLGLIRHGQR 122

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            H   + LG   ++ FVA+ALVD Y+    + +A   F  +   DV+ + +++  YA + 
Sbjct: 123 AHGLAVVLGLEVLDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHG 182

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L  +AL++F  M     +P+  +    L      G++  G+ IHG V K G +   V  Q
Sbjct: 183 LDGEALKIFEDMVNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLE-SVVASQ 241

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           ++L  MY +CN+IE S+ VF      +     S +  L+ +G  + AV +F  M+   I 
Sbjct: 242 TSLLTMYSRCNMIEDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSIS 301

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            +  TLS+ L+A S  A   +G    +H   +K G + N     +L++ Y +CG+++ + 
Sbjct: 302 PNPFTLSSILQACSSLAMLEVG--EQIHAITMKLGLDGNKYAGAALINLYGKCGNMDKAR 359

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF+ +   +VV   S++  Y++NG G EAL++ E +   GL+P+ VTF+ +L  CN++G
Sbjct: 360 SVFDVLTELDVVAINSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAG 419

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +V+EG  +F S+++ + I+    H++CMID+LGR+  L++A  L+++     D ++W +L
Sbjct: 420 LVEEGCQIFASIRNNHNIELTIDHFTCMIDLLGRSRRLEEAAMLIEEVR-NPDVVLWRTL 478

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L SC++HG   +  +V + ++EL P D   +  ++N Y+  G++   ++++ T    KL 
Sbjct: 479 LNSCKIHGEVEMAEKVMSKILELAPGDGGTHILLTNLYASAGKWNQVIEMKSTIRDLKLK 538

Query: 653 RDIGHSLIEVN 663
           +    S ++V+
Sbjct: 539 KSPAMSWVDVD 549



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 114/449 (25%), Positives = 219/449 (48%), Gaps = 6/449 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +  ++ ID ++K G L  A+KLFDE+P+R +VT+N +IS        K+A+  Y  M+  
Sbjct: 36  FLGHKLIDGYIKCGSLAEARKLFDELPSRHIVTWNSMISSHISHGKSKEAVEFYGNMLME 95

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG-LNLYIGSPLVDLYMRMGPSVR 163
           G+   A TFS++    S  G    G + H   + LG   L+ ++ S LVD+Y +      
Sbjct: 96  GVLPDAYTFSAISKAFSQLGLIRHGQRAHGLAVVLGLEVLDGFVASALVDMYAKFDKMRD 155

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF-CYMVRGCS 222
           A  +F  + E+++  +  ++  + +     E L+++  M   GV+PN  +  C ++   +
Sbjct: 156 AHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDMVNRGVKPNEYTLACILINCGN 215

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +G L++ G+ +H  V+K G   V +    +L+  YS C  + ++ K F+ +   + ++W 
Sbjct: 216 LGDLVN-GQLIHGLVVKSGLESV-VASQTSLLTMYSRCNMIEDSIKVFNQLDYANQVTWT 273

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S V           A+ +F  M  C   P+  +    L   S    +  G+QIH    KL
Sbjct: 274 SFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQACSSLAMLEVGEQIHAITMKL 333

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G D G+ +  +AL ++YGKC  ++ + +VF+      +   NS++ +   +G   +A+E+
Sbjct: 334 GLD-GNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAINSMIYAYAQNGFGHEALEL 392

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  + + G+  + VT  + L A + +     G C++          E  I     ++D  
Sbjct: 393 FERLKNMGLVPNGVTFISILLACNNAGLVEEG-CQIFASIRNNHNIELTIDHFTCMIDLL 451

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
            R   +E +  + E++ +P+VV + +++N
Sbjct: 452 GRSRRLEEAAMLIEEVRNPDVVLWRTLLN 480



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 92/366 (25%), Positives = 175/366 (47%), Gaps = 15/366 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+ + ++  +D + K   +  A  +F  +  +D+V +  LI G  +     +AL ++++M
Sbjct: 135 LDGFVASALVDMYAKFDKMRDAHLVFRRVLEKDVVLFTALIVGYAQHGLDGEALKIFEDM 194

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V+ G+K +  T + +L  C N G    G  IH  V+  G    +   + L+ +Y R    
Sbjct: 195 VNRGVKPNEYTLACILINCGNLGDLVNGQLIHGLVVKSGLESVVASQTSLLTMYSRCNMI 254

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             ++ +F++L   N  TW   +    +  R +  + ++ +M    + PN  +   +++ C
Sbjct: 255 EDSIKVFNQLDYANQVTWTSFVVGLVQNGREEVAVSIFREMIRCSISPNPFTLSSILQAC 314

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S   +L+ G+Q+H+  +KLG +D N +   AL++ Y  CG++ +A+  FD +   DV++ 
Sbjct: 315 SSLAMLEVGEQIHAITMKLG-LDGNKYAGAALINLYGKCGNMDKARSVFDVLTELDVVAI 373

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV-- 339
           NS++  YA      +ALELF R++     P+  +F+  L   +  G V  G QI   +  
Sbjct: 374 NSMIYAYAQNGFGHEALELFERLKNMGLVPNGVTFISILLACNNAGLVEEGCQIFASIRN 433

Query: 340 ---TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
               +L  DH      + + D+ G+   +E +  + E      +     L  +LL+S  I
Sbjct: 434 NHNIELTIDH-----FTCMIDLLGRSRRLEEAAMLIEEVRNPDV----VLWRTLLNSCKI 484

Query: 397 KDAVEM 402
              VEM
Sbjct: 485 HGEVEM 490


>gi|357165628|ref|XP_003580444.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic-like [Brachypodium distachyon]
          Length = 779

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 177/646 (27%), Positives = 333/646 (51%), Gaps = 22/646 (3%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L D+    N  LN+Y+S        + G ++  ++LFD  P R++V++N L+    K   
Sbjct: 133 LPDTAVLRNSLLNLYASCARY----RHGGVDVVRRLFDATPKRNVVSWNTLVGWYVKTGR 188

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG----FYTEGIQIHCRVLSLGFGLNLY 146
           P +AL ++  M+  GI+ +  +F +V    ++      F+  G+ I   V  +    +L+
Sbjct: 189 PYEALEMFMRMLEDGIRPTPVSFVNVFPAAASDDPSWPFFLYGMLIKHGVEYVS---DLF 245

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAE 205
           + S  + ++  +G    A  +FD   ++N+  WN M+  + +  +  E + ++ + M ++
Sbjct: 246 VVSSAIAMFSEIGDVQSARMVFDHAAKKNIEVWNTMITGYVQNGQFSEAMDLFIQIMGSK 305

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           GV  + ++F   +   S       G+QLH +++K     + + + NALV  YS CG++  
Sbjct: 306 GVPLDVVTFLSAITAASQSQDGKLGQQLHGYLMKGMRSTLPVILGNALVVMYSRCGNVHA 365

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A   FD +P  D++SWN++V+ +   D  F+ L L ++M          +    L+ AS 
Sbjct: 366 AFDLFDQLPEKDIVSWNTMVTAFVQNDFDFEGLLLVYQMHKSGFVADAVTLTAVLSAASN 425

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES-APGRSLECCN 384
           TG++  GKQ HGY+ + G +   +  +S L +MY K   I+ +  VF+     R     N
Sbjct: 426 TGDLQIGKQSHGYLIRHGIEGEGL--ESYLINMYSKSGHIDMAQRVFDGYGNDRDEVTWN 483

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           +++     SG  + AV  F  MV+ G+    VTL++ L A        + + + +H  A+
Sbjct: 484 AMIAGYTQSGQPEQAVLAFRAMVEAGVEPTSVTLASVLPACE-PVGEGVQAGKQIHSFAL 542

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           +   ++NI V  +L+D YS+CG I  +  VF+++   + V +T++++G  ++G G  AL 
Sbjct: 543 RHSLDTNIFVGTALVDMYSKCGEITAAENVFDRMTEKSTVTYTTMISGLGQHGFGDRALF 602

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           +   M   GL PD VTFL  ++ CN+SG+V EG  ++ SM++ +G+ A  QH+ C++D+L
Sbjct: 603 LFYSMQDNGLKPDAVTFLAAISACNYSGLVDEGLSLYRSMET-FGLSATPQHHCCIVDLL 661

Query: 565 GRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623
            +AG +++A + ++     G+ + +W SLL SC+  G + +   V + L+ +E      +
Sbjct: 662 AKAGRVEEAYDFVESLGEDGNFIAIWGSLLASCKAQGKQELTAFVTDKLLNIEKQYGHAH 721

Query: 624 SQ----VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           +     +S  ++  G +  +  +R     R L +D+G S I+V   
Sbjct: 722 AGYNVLLSQLFAAEGNWSSADSLRREMRVRGLRKDVGSSWIKVQGA 767


>gi|225462555|ref|XP_002267326.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Vitis vinifera]
          Length = 708

 Score =  278 bits (712), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 175/664 (26%), Positives = 330/664 (49%), Gaps = 6/664 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+ T L+P    +  +   C ++      L +  +  +   + N +  +  ++ + K G 
Sbjct: 49  MIRTGLVPNEFALGCVTKACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGD 108

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+++F+ M    +  +N +I G  +  +  ++L +   M   GI   A TF + L  
Sbjct: 109 IEDAERVFECMDNLVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKG 168

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C   G    G QIH  ++    G +  + + L+D+Y + G  + AL +FD L ++++ +W
Sbjct: 169 CLVVGNLNFGRQIHGLIIQSEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISW 228

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N +     +     E+ R ++K+   G++PN ++F  + R C   + L  G Q H    +
Sbjct: 229 NTVFAGLSQGDDAREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFR 288

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G  D    V ++L++ +S CG++  A   FD  P   + + N ++S Y       +AL 
Sbjct: 289 FGISD-EASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALN 347

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  +          +F   L    RT N   G+Q+HG + K GF     +V S+L   Y
Sbjct: 348 LFCNLNGLGLEADECTFSSALEACFRTENQKLGRQMHGTIVKSGFASQG-YVCSSLLKCY 406

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
               +++ S   F       L    +++++L+H G   +A+ +   + + G   DE    
Sbjct: 407 VGFGLLDDSFEFFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFG 466

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           +     +  A+      + +H   +K G+E+++ V+ +++DAY++CG IE + +VF++  
Sbjct: 467 SIFNCCAGIAAYR--QTKSVHSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTS 524

Query: 480 S-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              +V+ F +++  Y+ +G+ REA++  E M    L P + TF+ V++ C+H G+V++G 
Sbjct: 525 RFRDVILFNTMVMAYAHHGLVREAVETFEKMKLATLEPSQATFVSVISACSHLGLVEQGD 584

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           + F SM   YG+D    +Y C++D+  R G L+ A+ +++  P      +W SLL  CR+
Sbjct: 585 IFFKSMNLDYGMDPSPDNYGCLVDLFSRNGFLEDAKHIIETMPFPPWPAIWRSLLNGCRI 644

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           HGN+ +G   A  L++L P + A Y  +S  YSE G +  + ++R+  + R L +D G S
Sbjct: 645 HGNKELGEWAAKKLLQLVPENDAAYVLLSKVYSEEGSWSDAAKVRKGMIERGLWKDPGCS 704

Query: 659 LIEV 662
            IE+
Sbjct: 705 WIEI 708



 Score =  202 bits (513), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 143/576 (24%), Positives = 276/576 (47%), Gaps = 7/576 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G L    K+F EMP +++V++ L++SG  +    +  L +Y EM+  G+  +    
Sbjct: 2   YTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFAL 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             V   C+  G    G+ +HC  L +G   N ++GS ++++Y ++G    A  +F+ +  
Sbjct: 62  GCVTKACAALGGKELGLCVHCFALKVGMEKNPFVGSSILNMYAKLGDIEDAERVFECMDN 121

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
             +  WN M+  + + S   E L++ + M+ +G+  +  +F   ++GC +   L+ G+Q+
Sbjct: 122 LVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGRQI 181

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  +I+   V  +  V N+L+D Y   G  + A K FD +   D+ISWN++ +  +  D 
Sbjct: 182 HGLIIQ-SEVGFSTAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFAGLSQGDD 240

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +    F ++ L   +P+  +F     F     ++  G Q H    + G       V S
Sbjct: 241 AREIGRFFHKLMLTGLKPNCVTFSILFRFCGEALDLVSGLQFHCLAFRFGISD-EASVTS 299

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           +L +M+ +C  +  +  VF+SAP +S+  CN +++    + +  +A+ +F  +   G+  
Sbjct: 300 SLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNGLGLEA 359

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           DE T S+ L+A   + +  LG  R +H   +KSGF S   V  SL+  Y   G ++ S +
Sbjct: 360 DECTFSSALEACFRTENQKLG--RQMHGTIVKSGFASQGYVCSSLLKCYVGFGLLDDSFE 417

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
            F  +   ++V + ++++     G   EA+ +L  + + G  PD+  F  +   C     
Sbjct: 418 FFNGVERLDLVSWGAMISALVHKGYSSEAIGLLNRLKEAGGKPDEFIFGSIFNCCAGIAA 477

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            ++ + V +S+    G +A     S +ID   + G ++ A  +  QT    D +++++++
Sbjct: 478 YRQTKSV-HSLVVKMGYEAHVFVASAVIDAYAKCGDIENARRVFDQTSRFRDVILFNTMV 536

Query: 594 RSCRVHG--NEIIGRRVANILMELEPVDFAVYSQVS 627
            +   HG   E +       L  LEP      S +S
Sbjct: 537 MAYAHHGLVREAVETFEKMKLATLEPSQATFVSVIS 572



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 187/387 (48%), Gaps = 8/387 (2%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G     L +F E+P +NL +W L++    +    +  L +Y +M   G+ PN  +
Sbjct: 1   MYTKCGFLAGGLKVFGEMPMKNLVSWTLVVSGAVQNGEFEMGLGVYLEMIRTGLVPNEFA 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              + + C+     + G  +H   +K+G ++ N FV +++++ Y+  G + +A++ F+ +
Sbjct: 61  LGCVTKACAALGGKELGLCVHCFALKVG-MEKNPFVGSSILNMYAKLGDIEDAERVFECM 119

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
               V  WN+++  YA     F++L++   MQ         +F+  L      GN+ FG+
Sbjct: 120 DNLVVGCWNAMIGGYAQCSYGFESLKIVSVMQYKGISMDAFTFINALKGCLVVGNLNFGR 179

Query: 334 QIHGYV--TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           QIHG +  +++GF   S  V ++L DMY K      ++ VF+    + +   N++   L 
Sbjct: 180 QIHGLIIQSEVGF---STAVMNSLMDMYFKNGGGLYALKVFDRLQDKDIISWNTVFAGLS 236

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
              + ++    F  ++  G+  + VT S   +      + +L S    HC A + G    
Sbjct: 237 QGDDAREIGRFFHKLMLTGLKPNCVTFSILFRF--CGEALDLVSGLQFHCLAFRFGISDE 294

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
            +V+ SL++ +SRCG + ++  VF+  P  ++     +++GY+ N    EAL++   +  
Sbjct: 295 ASVTSSLINMFSRCGAMRMACLVFDSAPFKSIHTCNEMISGYNLNCHNAEALNLFCNLNG 354

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
            GL  D+ TF   L  C  +   K G+
Sbjct: 355 LGLEADECTFSSALEACFRTENQKLGR 381


>gi|347954514|gb|AEP33757.1| organelle transcript processing 82, partial [Aethionema
           cordifolium]
          Length = 679

 Score =  278 bits (712), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 159/533 (29%), Positives = 289/533 (54%), Gaps = 35/533 (6%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +F  + E N  +WN M+R     S P   L +Y  M + G+ PN  +F ++ + C+ 
Sbjct: 31  AISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKSCAK 90

Query: 224 GMLLDEGKQLHSHVIKLGW-VDVNIFVA-----------------------------NAL 253
                EGKQ+H+ ++K G  VD+++  +                              A+
Sbjct: 91  SKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSYTAM 150

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +  Y++ G++ +A+K FD IP+ DV+SWN+++S YA+     +ALELF  M     +P  
Sbjct: 151 ITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVKPDE 210

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            +    L+  + +GNV  G+QIH ++   GF   ++ + +AL D+Y KC  +E +  +FE
Sbjct: 211 STMATVLSTCTHSGNVELGRQIHSWIDNHGFG-SNLKLVNALIDLYSKCGEMERAHGLFE 269

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
               + +   N+L+    +  + K+A+ +F  M+  G   ++VT+ + L A +   + ++
Sbjct: 270 GLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACAHLGAIDI 329

Query: 434 GSCRLLHCCAIKS--GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           G  R +H    K   G  +N ++  SL+D Y++CG+IE ++QVF+ I + ++    +++ 
Sbjct: 330 G--RWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSCNAMIF 387

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G++ +G    A D+L  M + G+ PD +TF+ +L+ C+H+G+   G+ +F SM   Y I+
Sbjct: 388 GFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMTLDYRIE 447

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611
              +HY CMID+LGR+G+  +AEEL+       D ++W SLL++C++H N  +G  +A  
Sbjct: 448 PKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKACKIHKNLELGELIAQK 507

Query: 612 LMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           LM++EP +   Y  +SN Y+    ++   ++R     + L +  G S IE++S
Sbjct: 508 LMKIEPKNPGSYVLLSNIYATSARWDDVARVRTLLNDKGLKKVPGCSSIEIDS 560



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 117/471 (24%), Positives = 220/471 (46%), Gaps = 45/471 (9%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A  +F  +   + +++N +I G      P  AL LY  M+S G+  ++ TF  +   
Sbjct: 28  LPYAISVFKSIQEPNQLSWNTMIRGHALSSDPISALNLYVYMISLGLSPNSYTFPFLFKS 87

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR---------------------- 157
           C+ +    EG QIH ++L  G  ++L++ + L+ +Y +                      
Sbjct: 88  CAKSKAAQEGKQIHAQILKYGLTVDLHVHTSLISMYAQNGIVEDAHKVFDTSSHRDVVSY 147

Query: 158 ---------MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
                     G   +A  +FDE+P +++ +WN M+  + E+ R  E L ++N+M    V+
Sbjct: 148 TAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMMKMDVK 207

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----VNIFVANALVDFYSACGSL 263
           P+  +   ++  C+    ++ G+Q+HS      W+D      N+ + NAL+D YS CG +
Sbjct: 208 PDESTMATVLSTCTHSGNVELGRQIHS------WIDNHGFGSNLKLVNALIDLYSKCGEM 261

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
             A   F+ +   DVISWN+++  YA  +   +AL +F  M    + P+  + +  L   
Sbjct: 262 ERAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPAC 321

Query: 324 SRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
           +  G +  G+ IH Y+  KL     +  +Q++L DMY KC  IE++  VF++   +SL  
Sbjct: 322 AHLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSS 381

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
           CN+++      G    A ++   M  +GI  D++T    L A S +  ++LG  ++    
Sbjct: 382 CNAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGR-KIFKSM 440

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
            +    E  +     ++D   R G  + + ++   +   P+ V + S++  
Sbjct: 441 TLDYRIEPKLEHYGCMIDLLGRSGLFKEAEELINSMTMEPDGVIWGSLLKA 491



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 88/299 (29%), Positives = 163/299 (54%), Gaps = 1/299 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G+++ A+K+FDE+P +D+V++N +ISG  +    K+AL L++EM+
Sbjct: 143 DVVSYTAMITGYASRGNMDKAQKMFDEIPIKDVVSWNAMISGYAEIGRYKEALELFNEMM 202

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K   ST ++VLS C+++G    G QIH  + + GFG NL + + L+DLY + G   
Sbjct: 203 KMDVKPDESTMATVLSTCTHSGNVELGRQIHSWIDNHGFGSNLKLVNALIDLYSKCGEME 262

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
           RA  LF+ L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 263 RAHGLFEGLQYKDVISWNTLIGGYAYINHHKEALLVFQEMLKLGETPNDVTMLSILPACA 322

Query: 223 IGMLLDEGKQLHSHV-IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++  KL  +  N  +  +L+D Y+ CG++  A + FD I    + S 
Sbjct: 323 HLGAIDIGRWIHVYIDKKLKGIITNTSLQTSLIDMYAKCGNIEAANQVFDTILNKSLSSC 382

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           N+++  +A +     A +L  RM+     P   +FV  L+  S  G    G++I   +T
Sbjct: 383 NAMIFGFAMHGRADAAFDLLSRMKKDGIEPDDITFVGLLSACSHAGLSDLGRKIFKSMT 441


>gi|225457044|ref|XP_002279639.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21300
           [Vitis vinifera]
          Length = 807

 Score =  278 bits (712), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 193/624 (30%), Positives = 310/624 (49%), Gaps = 12/624 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV-SHGI 106
           N  +  + K G +  A ++F++MP  D+V++N +ISG  K     ++L  +  MV   GI
Sbjct: 148 NSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGI 207

Query: 107 -KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
                +  SS+LS CS+    T G +IH  V+  G  +  Y+ S L+++YM+ G    A 
Sbjct: 208 YPNRVACVSSILS-CSSLQSLTHGREIHGVVVKSGLDVEEYLVSSLIEMYMKCGSIKNAE 266

Query: 166 DLFDELPE-----RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
           ++F+ + +     RN   WN+M+  +       + L ++ KM   G++P+  +   +   
Sbjct: 267 NIFNSILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSL 326

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS  + +  GKQ+H  + K G +  NI V  AL+D Y  CG +    K F      ++I 
Sbjct: 327 CSESLDIAFGKQIHGLIFKFG-LKNNIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIM 385

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W++++S  A       ALELF+  ++          V  L   S       G QIHG  T
Sbjct: 386 WSAVISNCAQSGCPTKALELFYEFKMEDGLADSGILVAVLRACSSLTLKPEGMQIHGLAT 445

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K+GF    V V SAL D+Y KC  +  S  VF     + L   N+L++         +A+
Sbjct: 446 KMGF-VSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEAL 504

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           + F  M  E I  + VT++  L   +  +   L  C+ +H   I+ G  S + VS SL+ 
Sbjct: 505 KAFRDMQLEEIRPNTVTIACILSVCAHLSVMTL--CKEVHGYLIRQGLGSTVLVSNSLIA 562

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG I  S   FEK+P  N V + SI+ G   +    E + + + M+  G+ PD VT
Sbjct: 563 TYAKCGDINSSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVT 622

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F  +L+ C+H+G V EG   F SM   + +    + Y+CM+D+LGRAG L++A +L+   
Sbjct: 623 FTAILSACSHAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAM 682

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D  +W SLL SC+ HG+EI+   VAN + +L P        ++N Y  +G+     
Sbjct: 683 PCTPDDRIWGSLLGSCKNHGDEILAEIVANHIFKLVPSSVGYRVLLANLYENLGKGREGS 742

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
           ++R       L +  G S IEV++
Sbjct: 743 KVRSEIKDMGLKKKPGCSWIEVDN 766



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 124/445 (27%), Positives = 228/445 (51%), Gaps = 13/445 (2%)

Query: 94  ALYLYDEMVSHGIK-ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           A+ +Y +M+  G+K E    F  ++          +G QIH  VL LG   ++ + + L+
Sbjct: 92  AIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKGRQIHGHVLKLGVLDDVSVVNSLL 151

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNG 211
            +Y + G    A+ +F+++PE +L +WN M+  F +       L  +  M  E G+ PN 
Sbjct: 152 TMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSMDYTRSLMFFRSMVWEFGIYPNR 211

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++    +  CS    L  G+++H  V+K G +DV  ++ ++L++ Y  CGS+  A+  F+
Sbjct: 212 VACVSSILSCSSLQSLTHGREIHGVVVKSG-LDVEEYLVSSLIEMYMKCGSIKNAENIFN 270

Query: 272 FIPVDD-----VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
            I   D      + WN ++S Y        AL LF +M +   +P   + V   +  S +
Sbjct: 271 SILDKDSVRRNAVIWNVMISGYVSNGCFSQALLLFIKMMVWGIKPDYSTMVSLFSLCSES 330

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
            ++ FGKQIHG + K G  + ++ V++AL DMY KC  + + + +F  +   +L   +++
Sbjct: 331 LDIAFGKQIHGLIFKFGLKN-NIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAV 389

Query: 387 MTSLLHSGNIKDAVEMF-GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++   SG    A+E+F  F +++G+  D   L   L+A S       G    +H  A K
Sbjct: 390 ISNCAQSGCPTKALELFYEFKMEDGLA-DSGILVAVLRACSSLTLKPEG--MQIHGLATK 446

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            GF S++ V  +L+D Y++C  +  S +VF ++   ++V + ++++GY+++    EAL  
Sbjct: 447 MGFVSDVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKA 506

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNH 530
              M    + P+ VT  C+L+ C H
Sbjct: 507 FRDMQLEEIRPNTVTIACILSVCAH 531



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 80/340 (23%), Positives = 165/340 (48%), Gaps = 13/340 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
           NI      +D ++K G + +  K+F      +++ ++ +IS C +   P +AL L+ E  
Sbjct: 351 NIRVETALLDMYLKCGDMGTGLKIFRRSQNHNLIMWSAVISNCAQSGCPTKALELFYEFK 410

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +  G+ +S     +VL  CS+     EG+QIH     +GF  ++++GS LVDLY +    
Sbjct: 411 MEDGLADSG-ILVAVLRACSSLTLKPEGMQIHGLATKMGFVSDVFVGSALVDLYAKCRDM 469

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +  +F  L +++L +WN ++  + +    DE L+ +  M+ E + PN ++   ++  C
Sbjct: 470 GYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQLEEIRPNTVTIACILSVC 529

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +   ++   K++H ++I+ G +   + V+N+L+  Y+ CG +  +  +F+ +P  + +SW
Sbjct: 530 AHLSVMTLCKEVHGYLIRQG-LGSTVLVSNSLIATYAKCGDINSSLYTFEKMPERNDVSW 588

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIH 336
           NSI+     +    + + LF +M     +P   +F   L+  S  G V     YF   + 
Sbjct: 589 NSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACSHAGRVDEGCKYFKSMVE 648

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            +  K   +       + + D+ G+   +  +  +  + P
Sbjct: 649 DFNLKPQLEQ-----YTCMVDLLGRAGHLNQAYDLIMAMP 683



 Score =  101 bits (251), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 62/245 (25%), Positives = 126/245 (51%), Gaps = 3/245 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  +D + K   +  +KK+F  +  +D+V++N LISG  +     +AL  + +M 
Sbjct: 452 DVFVGSALVDLYAKCRDMGYSKKVFLRLSQKDLVSWNALISGYAQDECADEALKAFRDMQ 511

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              I+ +  T + +LSVC++    T   ++H  ++  G G  + + + L+  Y + G   
Sbjct: 512 LEEIRPNTVTIACILSVCAHLSVMTLCKEVHGYLIRQGLGSTVLVSNSLIATYAKCGDIN 571

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +L  F+++PERN  +WN ++      SR DE++ +++KM A G++P+ ++F  ++  CS
Sbjct: 572 SSLYTFEKMPERNDVSWNSIILGMGMHSRTDEMIVLFDKMVASGIKPDHVTFTAILSACS 631

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DDVIS 280
               +DEG +    +++   +   +     +VD     G L +A      +P   DD I 
Sbjct: 632 HAGRVDEGCKYFKSMVEDFNLKPQLEQYTCMVDLLGRAGHLNQAYDLIMAMPCTPDDRI- 690

Query: 281 WNSIV 285
           W S++
Sbjct: 691 WGSLL 695



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 47/203 (23%), Positives = 101/203 (49%), Gaps = 7/203 (3%)

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT-LSTTLKALSVSASANLGSCR 437
           S+   N+++      G   DA+ ++  M+D+G+ ++E       +KA         G  R
Sbjct: 72  SVSFANNVIREYTEDGFFDDAIGVYLKMLDDGVKVEEFRYFPCLIKAFGGLCDVYKG--R 129

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H   +K G   +++V  SL+  Y +CG +E + Q+FEK+P  ++V + ++++G+ ++ 
Sbjct: 130 QIHGHVLKLGVLDDVSVVNSLLTMYWKCGVVEDAVQMFEKMPEVDLVSWNTMISGFQKSM 189

Query: 498 MGREALDMLEVMI-QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQ 555
               +L     M+ + G+ P++V  +  +  C+    +  G+ +    +KS  G+D +  
Sbjct: 190 DYTRSLMFFRSMVWEFGIYPNRVACVSSILSCSSLQSLTHGREIHGVVVKS--GLDVEEY 247

Query: 556 HYSCMIDMLGRAGILDKAEELLQ 578
             S +I+M  + G +  AE +  
Sbjct: 248 LVSSLIEMYMKCGSIKNAENIFN 270


>gi|15231798|ref|NP_190904.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174119|sp|Q9LFI1.1|PP280_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g53360, mitochondrial; Flags: Precursor
 gi|6729487|emb|CAB67643.1| putative protein [Arabidopsis thaliana]
 gi|332645554|gb|AEE79075.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 768

 Score =  278 bits (712), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 178/661 (26%), Positives = 339/661 (51%), Gaps = 15/661 (2%)

Query: 9   RVRTITTLAPTCTSIVPLSSSL-----LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           R+RT  +L   C+S   L+        +L+S C+ +  LN    N  +  + K G L  A
Sbjct: 66  RLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILN----NHILSMYGKCGSLRDA 121

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +++FD MP R++V+Y  +I+G  +     +A+ LY +M+   +      F S++  C+++
Sbjct: 122 REVFDFMPERNLVSYTSVITGYSQNGQGAEAIRLYLKMLQEDLVPDQFAFGSIIKACASS 181

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                G Q+H +V+ L    +L   + L+ +Y+R      A  +F  +P ++L +W+ ++
Sbjct: 182 SDVGLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASRVFYGIPMKDLISWSSII 241

Query: 184 RAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
             F +L    E L    +M + GV  PN   F   ++ CS  +  D G Q+H   IK   
Sbjct: 242 AGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIK-SE 300

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           +  N     +L D Y+ CG L  A++ FD I   D  SWN I++  A+     +A+ +F 
Sbjct: 301 LAGNAIAGCSLCDMYARCGFLNSARRVFDQIERPDTASWNVIIAGLANNGYADEAVSVFS 360

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           +M+     P   S    L   ++   +  G QIH Y+ K GF    + V ++L  MY  C
Sbjct: 361 QMRSSGFIPDAISLRSLLCAQTKPMALSQGMQIHSYIIKWGF-LADLTVCNSLLTMYTFC 419

Query: 363 NVIESSVAVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           + +     +FE     +     N+++T+ L      + + +F  M+      D +T+   
Sbjct: 420 SDLYCCFNLFEDFRNNADSVSWNTILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNL 479

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L+     +S  LGS   +HC ++K+G      +   L+D Y++CG +  + ++F+ + + 
Sbjct: 480 LRGCVEISSLKLGS--QVHCYSLKTGLAPEQFIKNGLIDMYAKCGSLGQARRIFDSMDNR 537

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +VV +++++ GY+++G G EAL + + M   G+ P+ VTF+ VL  C+H G+V+EG  ++
Sbjct: 538 DVVSWSTLIVGYAQSGFGEEALILFKEMKSAGIEPNHVTFVGVLTACSHVGLVEEGLKLY 597

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            +M++ +GI   ++H SC++D+L RAG L++AE  + +     D ++W +LL +C+  GN
Sbjct: 598 ATMQTEHGISPTKEHCSCVVDLLARAGRLNEAERFIDEMKLEPDVVVWKTLLSACKTQGN 657

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             + ++ A  +++++P +   +  + + ++  G +E +  +R +     + +  G S IE
Sbjct: 658 VHLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWENAALLRSSMKKHDVKKIPGQSWIE 717

Query: 662 V 662
           +
Sbjct: 718 I 718


>gi|359478617|ref|XP_003632146.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 628

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 171/593 (28%), Positives = 312/593 (52%), Gaps = 7/593 (1%)

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P  D  + N  I+     +     L L  ++  HG   +A   + ++S C+ +G    GI
Sbjct: 40  PGNDFFSCNSHIACDTDEKQSSVDLKLLAQLQQHGSAPTAHILNRMVSSCAKSGSVFVGI 99

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  ++ +GF  N+YI S LVD+Y + G    A  LFDE+P RN+ TWN ++  +  + 
Sbjct: 100 QLHSTIIKVGFDSNVYICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVG 159

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            P+  + ++ +M   G++P   S   ++ GC        G Q+H   +K G+   NI V 
Sbjct: 160 CPEIAIELFLEMVKVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFC-YNIVVG 218

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
             L+D YS   ++  ++  FD +P  ++I+W S+V+ YA       A+ L   MQ    R
Sbjct: 219 TCLIDLYSKGWNIDASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIR 278

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV--IESS 368
            +  ++   L+  S + ++   KQ+H  + + G +  S +++  L  +Y +C+   +E  
Sbjct: 279 LNYVTYNCLLSSFSSSNDLDHCKQVHCRIIREGLESNS-YLEVTLVTVYSECSSSSLEDF 337

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             V            N+++  L + GN + A++ F  M   GI +D  T ++ L+A+ + 
Sbjct: 338 NKVCSGVTRWDQISWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMI 397

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           ++ + G  + +H   +K+G+ SN+ V   L+  Y+RCG I  + +VF  +   +V+ + S
Sbjct: 398 STLDEG--KQIHALVLKAGYGSNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNS 455

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           +++G + +G GREA+++ E M + G+ PD  TFL VL+ C H G++ +G   F+ M++ Y
Sbjct: 456 LLSGCAYHGYGREAVELFEQMRRSGVKPDNTTFLVVLSACRHVGLLDKGLEYFDLMRNDY 515

Query: 549 GIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
            +++   +HYS M+D+  RAG L +AE+ +   P      ++ +LL +C+VHGN  I  R
Sbjct: 516 SLESPTTEHYSSMVDLFSRAGYLSEAEDFINTMPIEPGPSVYKALLSACQVHGNVEIAVR 575

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
            A  L+++ P D  +Y  +SN  + +G ++    IR+    R + ++ G+S I
Sbjct: 576 CAKKLLQMCPNDPVIYVLLSNVQATVGYWDNVASIRKVMCDRGVRKEPGYSWI 628



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 141/496 (28%), Positives = 233/496 (46%), Gaps = 40/496 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  +  +D + K G ++SA++LFDEMP R++VT+N LISG      P+ A+ L+ EMV
Sbjct: 113 NVYICSALVDMYGKCGAVSSAQRLFDEMPHRNVVTWNSLISGYLHVGCPEIAIELFLEMV 172

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI  +  + S+VL  C        GIQ+H   +  GF  N+ +G+ L+DLY + G ++
Sbjct: 173 KVGIDPTPFSVSAVLVGCWRMEDTKLGIQVHGLSMKCGFCYNIVVGTCLIDLYSK-GWNI 231

Query: 163 RALDL-FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A  L FD +PERN+ TW  M+  +    +P   + +   M+  G+  N +++  ++   
Sbjct: 232 DASRLMFDLMPERNIITWTSMVAGYAHCQQPVAAMVLVRDMQRLGIRLNYVTYNCLLSSF 291

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC--GSLIEAKKSFDFIPVDDVI 279
           S    LD  KQ+H  +I+ G ++ N ++   LV  YS C   SL +  K    +   D I
Sbjct: 292 SSSNDLDHCKQVHCRIIREG-LESNSYLEVTLVTVYSECSSSSLEDFNKVCSGVTRWDQI 350

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN+++   ++      AL+ F +M+       + +F   L        +  GKQIH  V
Sbjct: 351 SWNAVIGGLSNLGNGEAALKCFSKMRQAGIDMDLFTFTSVLRAIGMISTLDEGKQIHALV 410

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G+   +++VQ+ L  MY +C  I  +  VF       +   NSL++   + G  ++A
Sbjct: 411 LKAGYG-SNLNVQNGLVSMYARCGSINDAKRVFSLMDRHDVISWNSLLSGCAYHGYGREA 469

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           VE+F  M   G+  D  T    L A           CR  H   +  G E          
Sbjct: 470 VELFEQMRRSGVKPDNTTFLVVLSA-----------CR--HVGLLDKGLE---------- 506

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
                  + +L    +  + SP    ++S+++ +SR G   EA D +  M    + P   
Sbjct: 507 -------YFDLMRNDYS-LESPTTEHYSSMVDLFSRAGYLSEAEDFINTM---PIEPGPS 555

Query: 520 TFLCVLAGCNHSGMVK 535
            +  +L+ C   G V+
Sbjct: 556 VYKALLSACQVHGNVE 571


>gi|6714305|gb|AAF26001.1|AC013354_20 F15H18.4 [Arabidopsis thaliana]
          Length = 1702

 Score =  278 bits (711), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 186/628 (29%), Positives = 319/628 (50%), Gaps = 11/628 (1%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            +++  N  +  +   G +  A +LFD MP R++V++N +I         +++  L  EM+
Sbjct: 576  DVFVGNALVSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMM 635

Query: 103  SH----GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
                        +T  +VL VC+       G  +H   + L     L + + L+D+Y + 
Sbjct: 636  EENGDGAFMPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKC 695

Query: 159  GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA--EGVEPNGLSFCY 216
            G    A  +F     +N+ +WN M+  F           +  +M A  E V+ + ++   
Sbjct: 696  GCITNAQMIFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILN 755

Query: 217  MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             V  C     L   K+LH + +K  +V  N  VANA V  Y+ CGSL  A++ F  I   
Sbjct: 756  AVPVCFHESFLPSLKELHCYSLKQEFV-YNELVANAFVASYAKCGSLSYAQRVFHGIRSK 814

Query: 277  DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
             V SWN+++  +A  +    +L+   +M++    P   +    L+  S+  ++  GK++H
Sbjct: 815  TVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEVH 874

Query: 337  GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            G++ +   +   + V  ++  +Y  C  + +  A+F++   +SL   N+++T  L +G  
Sbjct: 875  GFIIRNWLER-DLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFP 933

Query: 397  KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
              A+ +F  MV  GI L  +++     A S+  S  LG  R  H  A+K   E +  ++C
Sbjct: 934  DRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLG--REAHAYALKHLLEDDAFIAC 991

Query: 457  SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
            SL+D Y++ G I  S +VF  +   +   + +++ GY  +G+ +EA+ + E M + G  P
Sbjct: 992  SLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTGHNP 1051

Query: 517  DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
            D +TFL VL  CNHSG++ EG    + MKS +G+  + +HY+C+IDMLGRAG LDKA  +
Sbjct: 1052 DDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHYACVIDMLGRAGQLDKALRV 1111

Query: 577  L-QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            + ++     D  +W SLL SCR+H N  +G +VA  L ELEP     Y  +SN Y+ +G+
Sbjct: 1112 VAEEMSEEADVGIWKSLLSSCRIHQNLEMGEKVAAKLFELEPEKPENYVLLSNLYAGLGK 1171

Query: 636  FEVSMQIRETALARKLTRDIGHSLIEVN 663
            +E   ++R+      L +D G S IE+N
Sbjct: 1172 WEDVRKVRQRMNEMSLRKDAGCSWIELN 1199



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 105/398 (26%), Positives = 199/398 (50%), Gaps = 13/398 (3%)

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEP 209
           ++ +Y   G    +  +FD L  +NL  WN ++ ++      DEVL  + +M     + P
Sbjct: 481 IITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDLLP 540

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +  ++  +++ C+    +  G  +H  V+K G V+ ++FV NALV FY   G + +A + 
Sbjct: 541 DHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE-DVFVGNALVSFYGTHGFVTDALQL 599

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR----PSIRSFVEFLNFASR 325
           FD +P  +++SWNS++ +++D     ++  L   M          P + + V  L   +R
Sbjct: 600 FDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAR 659

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  GK +HG+  KL  D   V + +AL DMY KC  I ++  +F+    +++   N+
Sbjct: 660 EREIGLGKGVHGWAVKLRLDKELV-LNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNT 718

Query: 386 LMTSLLHSGNIKDAVEMFGFMV--DEGIGLDEVTLSTTLKALSVSASAN-LGSCRLLHCC 442
           ++      G+     ++   M+   E +  DEVT+   L A+ V    + L S + LHC 
Sbjct: 719 MVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTI---LNAVPVCFHESFLPSLKELHCY 775

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
           ++K  F  N  V+ + + +Y++CG +  + +VF  I S  V  + +++ G++++   R +
Sbjct: 776 SLKQEFVYNELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLS 835

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           LD    M   GL+PD  T   +L+ C+    ++ G+ V
Sbjct: 836 LDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLGKEV 873



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 133/566 (23%), Positives = 253/566 (44%), Gaps = 25/566 (4%)

Query: 48   NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGI 106
             R I  +   G  + ++ +FD + ++++  +N +IS   +     + L  + EM+S   +
Sbjct: 479  TRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDEVLETFIEMISTTDL 538

Query: 107  KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                 T+  V+  C+       G+ +H  V+  G   ++++G+ LV  Y   G    AL 
Sbjct: 539  LPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVEDVFVGNALVSFYGTHGFVTDALQ 598

Query: 167  LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE----PNGLSFCYMVRGCS 222
            LFD +PERNL +WN M+R F +    +E   +  +M  E  +    P+  +   ++  C+
Sbjct: 599  LFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCA 658

Query: 223  IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                +  GK +H   +KL  +D  + + NAL+D YS CG +  A+  F      +V+SWN
Sbjct: 659  REREIGLGKGVHGWAVKLR-LDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWN 717

Query: 283  SIV---SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF---GKQIH 336
            ++V   S   D    FD L    R  L          V  LN      +  F    K++H
Sbjct: 718  TMVGGFSAEGDTHGTFDVL----RQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELH 773

Query: 337  GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             Y  K  F +  + V +A    Y KC  +  +  VF     +++   N+L+     S + 
Sbjct: 774  CYSLKQEFVYNEL-VANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDP 832

Query: 397  KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            + +++    M   G+  D  T+ + L A S   S  LG  + +H   I++  E ++ V  
Sbjct: 833  RLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRLG--KEVHGFIIRNWLERDLFVYL 890

Query: 457  SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
            S++  Y  CG +     +F+ +   ++V + +++ GY +NG    AL +   M+  G+  
Sbjct: 891  SVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQL 950

Query: 517  DKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSC-MIDMLGRAGILDKAE 574
              ++ + V   C+    ++ G+     ++K +   DA     +C +IDM  + G + ++ 
Sbjct: 951  CGISMMPVFGACSLLPSLRLGREAHAYALKHLLEDDA---FIACSLIDMYAKNGSITQSS 1007

Query: 575  ELLQQTPGGGDCMMWSSLLRSCRVHG 600
            ++            W++++    +HG
Sbjct: 1008 KVFNGLKEKSTA-SWNAMIMGYGIHG 1032



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/359 (23%), Positives = 166/359 (46%), Gaps = 18/359 (5%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL---------DEGKQLHSH 236
           FCE    D+  R   +   +       S  +++   ++G+LL         + G+++H  
Sbjct: 408 FCETGDLDKSFRTVQEFVGDD---ESSSDAFLLVREALGLLLQASGKRKDIEMGRKIHQL 464

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           V     +  +  +   ++  Y+ CGS  +++  FD +   ++  WN+++S Y+  +L  +
Sbjct: 465 VSGSTRLRNDDVLCTRIITMYAMCGSPDDSRFVFDALRSKNLFQWNAVISSYSRNELYDE 524

Query: 297 ALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
            LE F  M       P   ++   +   +   +V  G  +HG V K G     V V +AL
Sbjct: 525 VLETFIEMISTTDLLPDHFTYPCVIKACAGMSDVGIGLAVHGLVVKTGLVE-DVFVGNAL 583

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLD 414
              YG    +  ++ +F+  P R+L   NS++     +G  +++  + G M++E G G  
Sbjct: 584 VSFYGTHGFVTDALQLFDIMPERNLVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAF 643

Query: 415 EVTLSTTLKALSVSA-SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
              ++T +  L V A    +G  + +H  A+K   +  + ++ +LMD YS+CG I  +  
Sbjct: 644 MPDVATLVTVLPVCAREREIGLGKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQM 703

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG--LIPDKVTFLCVLAGCNH 530
           +F+   + NVV + +++ G+S  G      D+L  M+  G  +  D+VT L  +  C H
Sbjct: 704 IFKMNNNKNVVSWNTMVGGFSAEGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFH 762


>gi|297797117|ref|XP_002866443.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
 gi|297312278|gb|EFH42702.1| hypothetical protein ARALYDRAFT_919404 [Arabidopsis lyrata subsp.
           lyrata]
          Length = 749

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 167/619 (26%), Positives = 319/619 (51%), Gaps = 15/619 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N+ +  + K     SA+++FDE+P + + ++ +L+ G  +    +  +  + E++   I 
Sbjct: 102 NQLVIAYSKCSDFGSARQVFDEIPQKSVFSWTVLMVGATENGFYRDGIDYFVEILGCDIV 161

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
                 S+ +  C        G  +H +V++ GF    ++ + L+ +Y ++G    +  +
Sbjct: 162 PDEYALSAAIQACIGVDSIVVGEMVHAQVITRGFSSRTFVNTSLLGMYAKLGRIGDSCKV 221

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML- 226
           F+ L  RN  +WN M+  F       E    + +M  E + PN    C++    +IG L 
Sbjct: 222 FNSLENRNQVSWNAMISGFVSNGLYAEAYNSFLRMLGEEIRPN--VACFISVSKAIGQLG 279

Query: 227 -LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF--DFIPVDDVISWNS 283
            +++G+ ++    ++G +  NI V  AL+D ++ CG + E+   F  +F      + WN+
Sbjct: 280 DVEKGRYINRIAFEIG-MQSNIHVGTALIDMFAKCGCVTESWSVFVSNFSGCGVNLPWNA 338

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S +       +A+ LF RM     +  + ++   LN  +   ++ + KQ+HG + K  
Sbjct: 339 MISGFTISGHGEEAMLLFLRMCQNNIKRDVYTYCSTLNSIADMRSLEYVKQLHGMIWK-- 396

Query: 344 FDHGSVHVQ--SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              GS+ V   +AL D Y KC  +++   +F++    +     +L+T+   S   +DA+ 
Sbjct: 397 --SGSIGVSLCNALMDAYAKCGELDAMRKLFDTWEESNQISWTTLVTAYSQSSEWEDALS 454

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M + G   ++VT S  L + +   S   G  + +H    K+GF  +  V   L+D 
Sbjct: 455 VFSQMREMGFQPNQVTFSGVLASCASLCSLEYG--QQVHSLTCKTGFARDKCVESVLIDM 512

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG +  + +VFE +  P+V+ +T++++GY+++GM ++AL++   M      P+  TF
Sbjct: 513 YAKCGSVRDAIKVFESLKDPDVISWTAMISGYAQHGMAKDALELFRKMELVLPNPNSATF 572

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           LC+L  C+H G+V EG   F+ M+  YG+  + +HY+C++D+LGR G L +A + + + P
Sbjct: 573 LCLLFACSHGGLVDEGLRYFHLMEERYGLVPEIEHYACVVDILGRVGRLTEAWKFIMKMP 632

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  +WS+LL +CRVHGN  + +  A  ++   P DFA    +SN Y E G  E  + 
Sbjct: 633 IEPDEKVWSTLLGACRVHGNIQLAKIAAQKVLSYNPDDFAALVLLSNTYREAGNIEGGLN 692

Query: 642 IRETALARKLTRDIGHSLI 660
           +R    ++ + ++ G S I
Sbjct: 693 VRNMMKSQAMRKETGMSWI 711


>gi|2828294|emb|CAA16708.1| putatative protein [Arabidopsis thaliana]
 gi|7268714|emb|CAB78921.1| putatative protein [Arabidopsis thaliana]
          Length = 1260

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 170/589 (28%), Positives = 287/589 (48%), Gaps = 5/589 (0%)

Query: 77   TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRV 136
             +NL I        P ++L L+ EM   G + +  TF  V   C+          +H  +
Sbjct: 625  AWNLQIREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLADVGCCEMVHAHL 684

Query: 137  LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
            +   F  ++++G+  VD++++      A  +F+ +PER+  TWN ML  FC+    D+  
Sbjct: 685  IKSPFWSDVFVGTATVDMFVKCNSVDYAAKVFERMPERDATTWNAMLSGFCQSGHTDKAF 744

Query: 197  RMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256
             ++ +M+   + P+ ++   +++  S    L   + +H+  I+LG VDV + VAN  +  
Sbjct: 745  SLFREMRLNEITPDSVTVMTLIQSASFEKSLKLLEAMHAVGIRLG-VDVQVTVANTWIST 803

Query: 257  YSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
            Y  CG L  AK  F+ I   D  V+SWNS+   Y+ +   FDA  L+  M     +P + 
Sbjct: 804  YGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFKAYSVFGEAFDAFGLYCLMLREEFKPDLS 863

Query: 315  SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
            +F+           +  G+ IH +   LG D   +   +    MY K     S+  +F+ 
Sbjct: 864  TFINLAASCQNPETLTQGRLIHSHAIHLGTDQ-DIEAINTFISMYSKSEDTCSARLLFDI 922

Query: 375  APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
               R+      +++     G++ +A+ +F  M+  G   D VTL + +       S   G
Sbjct: 923  MTSRTCVSWTVMISGYAEKGDMDEALALFHAMIKSGEKPDLVTLLSLISGCGKFGSLETG 982

Query: 435  SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS 494
               +     I      N+ +  +L+D YS+CG I  +  +F+  P   VV +T+++ GY+
Sbjct: 983  KW-IDARADIYGCKRDNVMICNALIDMYSKCGSIHEARDIFDNTPEKTVVTWTTMIAGYA 1041

Query: 495  RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
             NG+  EAL +   MI     P+ +TFL VL  C HSG +++G   F+ MK VY I    
Sbjct: 1042 LNGIFLEALKLFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPGL 1101

Query: 555  QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
             HYSCM+D+LGR G L++A EL++      D  +W +LL +C++H N  I  + A  L  
Sbjct: 1102 DHYSCMVDLLGRKGKLEEALELIRNMSAKPDAGIWGALLNACKIHRNVKIAEQAAESLFN 1161

Query: 615  LEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            LEP   A Y +++N Y+  G ++   +IR     R + +  G S+I+VN
Sbjct: 1162 LEPQMAAPYVEMANIYAAAGMWDGFARIRSIMKQRNIKKYPGESVIQVN 1210



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 123/568 (21%), Positives = 247/568 (43%), Gaps = 43/568 (7%)

Query: 8    PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
            P   T   +A  C  +  +    ++ ++   +P   +++    T+D FVK   ++ A K+
Sbjct: 656  PNNFTFPFVAKACARLADVGCCEMVHAHLIKSPFWSDVFVGTATVDMFVKCNSVDYAAKV 715

Query: 67   FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
            F+ MP RD  T+N ++SG  +  H  +A  L+ EM  + I   + T  +++   S     
Sbjct: 716  FERMPERDATTWNAMLSGFCQSGHTDKAFSLFREMRLNEITPDSVTVMTLIQSASFEKSL 775

Query: 127  TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLATWNLMLR 184
                 +H   + LG  + + + +  +  Y + G    A  +F+ +   +R + +WN M +
Sbjct: 776  KLLEAMHAVGIRLGVDVQVTVANTWISTYGKCGDLDSAKLVFEAIDRGDRTVVSWNSMFK 835

Query: 185  AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            A+       +   +Y  M  E  +P+  +F  +   C     L +G+ +HSH I LG  D
Sbjct: 836  AYSVFGEAFDAFGLYCLMLREEFKPDLSTFINLAASCQNPETLTQGRLIHSHAIHLG-TD 894

Query: 245  VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
             +I   N  +  YS       A+  FD +     +SW  ++S YA+   + +AL LF  M
Sbjct: 895  QDIEAINTFISMYSKSEDTCSARLLFDIMTSRTCVSWTVMISGYAEKGDMDEALALFHAM 954

Query: 305  QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                ++P + + +  ++   + G++  GK I       G    +V + +AL DMY KC  
Sbjct: 955  IKSGEKPDLVTLLSLISGCGKFGSLETGKWIDARADIYGCKRDNVMICNALIDMYSKCGS 1014

Query: 365  IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
            I  +  +F++ P +++    +++     +G   +A+++F  M+D     + +T    L+A
Sbjct: 1015 IHEARDIFDNTPEKTVVTWTTMIAGYALNGIFLEALKLFSKMIDLDYKPNHITFLAVLQA 1074

Query: 425  LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
             +             H  +++ G+E                 +  +  QV+    SP + 
Sbjct: 1075 CA-------------HSGSLEKGWE-----------------YFHIMKQVYN--ISPGLD 1102

Query: 485  CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
             ++ +++   R G   EAL+++  M  +   PD   +  +L  C     VK   +   + 
Sbjct: 1103 HYSCMVDLLGRKGKLEEALELIRNMSAK---PDAGIWGALLNACKIHRNVK---IAEQAA 1156

Query: 545  KSVYGIDAD-RQHYSCMIDMLGRAGILD 571
            +S++ ++      Y  M ++   AG+ D
Sbjct: 1157 ESLFNLEPQMAAPYVEMANIYAAAGMWD 1184


>gi|302822426|ref|XP_002992871.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
 gi|300139319|gb|EFJ06062.1| hypothetical protein SELMODRAFT_136134 [Selaginella moellendorffii]
          Length = 716

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 165/585 (28%), Positives = 310/585 (52%), Gaps = 9/585 (1%)

Query: 81  LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140
           +I+ C +   P QAL L+ EM   GI       +S+++ C+      EG ++H  ++  G
Sbjct: 1   MIAACVREGRPLQALELWGEMEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITG 60

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
           F  ++ + + L+ +Y + G    A  +F+ +  ++L  W+ ++ A+    R +  + +Y 
Sbjct: 61  FRTDIPLETALLQMYAKCGSLDDAKRVFEGMEIKDLFAWSSIIAAYARAGRGEMAVVLYR 120

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M AEGVEPN ++F   + GC+    L +G+ +H  ++    V  +  + ++L++ Y  C
Sbjct: 121 RMIAEGVEPNVVTFACALGGCASVAGLADGRAIHQRILA-SKVPQDDVLQDSLLNMYLKC 179

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEF 319
             ++EA+K F+ +   +V S+ +++S Y       +ALELF RM       P+  +F   
Sbjct: 180 DEMVEARKVFEGMKARNVRSYTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATI 239

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L      GN+  G+++H ++   GFD   V VQ+AL  MYGKC     +  VF+S   R+
Sbjct: 240 LGAVEGLGNLEKGRKVHRHLASRGFDTNVV-VQNALVTMYGKCGSPVEARKVFDSMTARN 298

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +    S++ +    GN ++A+ +F  M  E  G   V+ S+ L A ++  + + G  R +
Sbjct: 299 VISWTSMIAAYAQHGNPQEALNLFKRMDVEPSG---VSFSSALNACALLGALDEG--REI 353

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H   +++   S   +  SL+  Y+RCG ++ + +VF ++ + +     +++  ++++G  
Sbjct: 354 HHRVVEANLASP-QMETSLLSMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRK 412

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
           ++AL +   M Q G+  D +TF+ VL  C+H+ +V + +    S+   +G+    +HY C
Sbjct: 413 KQALRIYRKMEQEGIPADGITFVSVLVACSHTSLVADCRDFLQSLVMDHGVVPLVEHYLC 472

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           M+D+LGR+G L  AEEL++  P   D + W +LL  C+ HG+   G R A  + EL P +
Sbjct: 473 MVDVLGRSGRLGDAEELVETMPYQADAVAWMTLLSGCKRHGDLDRGERAARKVFELAPAE 532

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
              Y  +SN Y+    F+ + ++R+    R +TR +  S IE+++
Sbjct: 533 TLPYVFLSNMYAAAKRFDDARRVRKEMEERGVTRPVAVSYIEIDN 577



 Score =  204 bits (519), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 244/489 (49%), Gaps = 12/489 (2%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           +T+L   CT +  L     L  +      + +I      +  + K G L+ AK++F+ M 
Sbjct: 33  VTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGME 92

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            +D+  ++ +I+   +    + A+ LY  M++ G++ +  TF+  L  C++     +G  
Sbjct: 93  IKDLFAWSSIIAAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRA 152

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH R+L+     +  +   L+++Y++    V A  +F+ +  RN+ ++  M+ A+ +   
Sbjct: 153 IHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGE 212

Query: 192 PDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             E L ++++M K E +EPN  +F  ++        L++G+++H H+   G+ D N+ V 
Sbjct: 213 HAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGF-DTNVVVQ 271

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NALV  Y  CGS +EA+K FD +   +VISW S+++ YA +    +AL LF RM +    
Sbjct: 272 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDV---E 328

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           PS  SF   LN  +  G +  G++IH  V +      S  ++++L  MY +C  ++ +  
Sbjct: 329 PSGVSFSSALNACALLGALDEGREIHHRVVEANL--ASPQMETSLLSMYARCGSLDDARR 386

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF     R    CN+++ +    G  K A+ ++  M  EGI  D +T  + L  ++ S +
Sbjct: 387 VFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRKMEQEGIPADGITFVSVL--VACSHT 444

Query: 431 ANLGSCR-LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTS 488
           + +  CR  L    +  G    +     ++D   R G +  + ++ E +P   + V + +
Sbjct: 445 SLVADCRDFLQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQADAVAWMT 504

Query: 489 IMNGYSRNG 497
           +++G  R+G
Sbjct: 505 LLSGCKRHG 513


>gi|347954546|gb|AEP33773.1| organelle transcript processing 82, partial [Lobularia maritima]
          Length = 695

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 167/570 (29%), Positives = 298/570 (52%), Gaps = 42/570 (7%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR----ALDLFDELPERNLATWNLMLRAFC 187
           IH +++  G     Y  S L++ +  + P       A+ +F+ + E NL  WN M R   
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHA 64

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             S P   L +Y  M + G+ PN  +F ++++ C+      EG+Q+H HV+KLG+ D+++
Sbjct: 65  LSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY-DLDL 123

Query: 248 FVANALVDFYSACGSLIEAKKSFDF-------------------------------IPVD 276
           +V  +L+  Y   G L +A+K FD                                IP+ 
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 183

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWN+++S YA+     +ALELF  M     RP   + V  ++  +++ ++  G+Q+H
Sbjct: 184 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 243

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            ++   GF   ++ + +AL D+Y KC  +E++  +FE    + +   N+L+    H    
Sbjct: 244 SWIDDHGFG-SNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNIAV 454
           K+A+ +F  M+  G   ++VT+ + L A +   +  +G  R +H    K   G  +  + 
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG--RWIHVYINKRLKGVANASSH 360

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++CG IE + QVF+ I + ++  + +++ G++ +G    A D+   M +  +
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 420

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD +TF+ +L+ C+HSGM+  G+ +F SMK  Y I    +HY CMID+LG +G+  +AE
Sbjct: 421 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 480

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E++       D ++W SLL++C++HGN  +G   A  L+++EP +   Y  +SN Y+  G
Sbjct: 481 EMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 540

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +    +IR     + + +  G S IE++S
Sbjct: 541 RWNEVAKIRALLNDKGMKKVPGCSSIEIDS 570



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 142/535 (26%), Positives = 241/535 (45%), Gaps = 83/535 (15%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ I+  V S H +    A  +F+ +   +++ +N +  G      P  ALYLY  M
Sbjct: 20  YALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCM 79

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-- 159
           +S G+  +  TF  +L  C+ +  + EG QIH  VL LG+ L+LY+ + L+ +Y++ G  
Sbjct: 80  ISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRL 139

Query: 160 ---------PSVR--------------------ALDLFDELPERNLATWNLMLRAFCELS 190
                     S R                    A  +FDE+P +++ +WN M+  + E  
Sbjct: 140 EDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETG 199

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----V 245
              E L ++ +M    V P+  +   +V  C+    ++ G+Q+HS      W+D      
Sbjct: 200 NNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHS------WIDDHGFGS 253

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N+ + NAL+D Y  CG +  A   F+ +   DVISWN+++  Y   +L  +AL LF  M 
Sbjct: 254 NLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 313

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCN 363
              + P+  + +  L   +  G +  G+ IH Y+ K   G  + S H +++L DMY KC 
Sbjct: 314 RSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH-RTSLIDMYAKCG 372

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            IE++  VF+S   RSL   N+++      G    A ++F  M    I  D++T    L 
Sbjct: 373 DIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLS 432

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A S S   +LG                                HI  S +   KI +P +
Sbjct: 433 ACSHSGMLDLGR-------------------------------HIFRSMKEDYKI-TPKL 460

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
             +  +++    +G+ +EA +M+  M    + PD V +  +L  C   G V+ G+
Sbjct: 461 EHYGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMHGNVELGE 512



 Score =  147 bits (372), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/294 (28%), Positives = 158/294 (53%), Gaps = 1/294 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G++ SA+K+FDE+P +D+V++N +ISG  +  + K+AL L+ EM+
Sbjct: 153 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM 212

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++   ST  SV+S C+ +     G Q+H  +   GFG NL I + L+DLY++ G   
Sbjct: 213 KTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 272

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               ++ G+ +H ++ K L  V        +L+D Y+ CG +  A++ FD I    + SW
Sbjct: 333 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 392

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           N+++  +A +     A ++F RM+     P   +FV  L+  S +G +  G+ I
Sbjct: 393 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI 446



 Score =  135 bits (340), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 198/428 (46%), Gaps = 46/428 (10%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDF---YSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           + +H+ +IK G  + N +  + L++F         L  A   F+ I   +++ WN++   
Sbjct: 4   RMIHAQMIKTGLHNTN-YALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD-- 345
           +A       AL L+  M      P+  +F   L   +++     G+QIHG+V KLG+D  
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 346 ----------------------------HGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
                                       H  V   +AL   Y     I S+  +F+  P 
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 182

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           + +   N++++    +GN K+A+E+F  M+   +  DE T+ + + A + SAS  LG  R
Sbjct: 183 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG--R 240

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H      GF SN+ +  +L+D Y +CG +E +  +FE +   +V+ + +++ GY+   
Sbjct: 241 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQH 556
           + +EAL + + M++ G  P+ VT L +L  C H G ++ G+ +   + K + G+     H
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 360

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN-----EIIGRRVANI 611
            + +IDM  + G ++ A+++            W++++    +HG      +I  R   N 
Sbjct: 361 RTSLIDMYAKCGDIEAAQQVFDSIL-NRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKN- 418

Query: 612 LMELEPVD 619
             E+EP D
Sbjct: 419 --EIEPDD 424



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 50/234 (21%), Positives = 108/234 (46%), Gaps = 8/234 (3%)

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE---LSHQVFEKIPSPNVVCFTSIMN 491
           S R++H   IK+G  +       L++      H +    +  VFE I  PN++ + ++  
Sbjct: 2   SLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFR 61

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G++ +     AL +   MI  GL+P+  TF  +L  C  S   +EGQ +   +  + G D
Sbjct: 62  GHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKL-GYD 120

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611
            D   ++ +I M  + G L+ A ++  Q+    D + +++L+      G     +++ + 
Sbjct: 121 LDLYVHTSLISMYVQNGRLEDARKVFDQS-SHRDVVSYTALITGYASKGYIASAQKMFD- 178

Query: 612 LMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
             E+   D   ++ + + Y+E G  + ++++ +  +   +  D    +  V++C
Sbjct: 179 --EIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 230


>gi|357485423|ref|XP_003612999.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355514334|gb|AES95957.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 676

 Score =  278 bits (711), Expect = 7e-72,   Method: Compositional matrix adjust.
 Identities = 161/551 (29%), Positives = 293/551 (53%), Gaps = 5/551 (0%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           ++S+++  +N    T    +H  +L  G  L  + G  L+D Y++      A  LFDE+P
Sbjct: 4   YTSLIAQFTNKKSLTTLKSLHTHILKSG-SLFSFFGHKLIDGYIKCSVITEARKLFDEMP 62

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            R++ TWN M+ +     +  E + +Y+ M  EGV P+  +F  + +  S   +  EG++
Sbjct: 63  NRHIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQK 122

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            H   + LG+   + FVA  +VD Y+  G + +A+  FD +   DV+ + +++  Y    
Sbjct: 123 AHGLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRG 182

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L  +ALE+F  M   R +P+  +    L      G++  GK IHG V K G +   V  Q
Sbjct: 183 LDGEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLE-SVVASQ 241

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           ++L  MY KCN++E S+ VF S    S     S +  L+ +G  + A+ MF  M+   I 
Sbjct: 242 TSLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSIS 301

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            +  T S+ L A   S+ A L +   +H   +K G + N  V  +L+  Y +CG++E + 
Sbjct: 302 PNHFTFSSILHA--CSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKAR 359

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VFE +   +VV   +++  Y++NG G EAL++ E M + G  P+ VTF+ +L  CN++G
Sbjct: 360 SVFESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAG 419

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +V+EG  +F+ +++ + I+  R HY+CMID+LGRA   ++A  L+++     D + W +L
Sbjct: 420 LVEEGCQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGK-NPDVIQWRTL 478

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L +C++HG   +  +    +++  P D   +  ++N Y+  G+++  ++++      +L 
Sbjct: 479 LNACKIHGEVEMAEKFMKKMLDQAPRDGGTHILLTNIYASAGKWDNVIEMKSAGRDLRLK 538

Query: 653 RDIGHSLIEVN 663
           +    S ++++
Sbjct: 539 KTPAMSWVDID 549



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 128/508 (25%), Positives = 243/508 (47%), Gaps = 18/508 (3%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR 73
           T+L    T+   L++   L ++   +  L  +  ++ ID ++K   +  A+KLFDEMP R
Sbjct: 5   TSLIAQFTNKKSLTTLKSLHTHILKSGSLFSFFGHKLIDGYIKCSVITEARKLFDEMPNR 64

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
            +VT+N +IS        K+A+ LYD M+  G+   A TFS++    S  G   EG + H
Sbjct: 65  HIVTWNSMISSHVSRGKTKEAIELYDNMLFEGVLPDAYTFSAIFKAFSEMGVSREGQKAH 124

Query: 134 CRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
              + LGF + + ++ + +VD+Y + G    A  +FD + ++++  +  ++  + +    
Sbjct: 125 GLAVVLGFEVSDGFVATGIVDMYAKFGKMKDARFVFDRVLDKDVVLFTALIVGYNQRGLD 184

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
            E L ++  M    ++PN  +   ++  C ++G L++ GK +H  V+K G   V +    
Sbjct: 185 GEALEVFEDMVGSRIKPNEYTLASVLVSCGNLGDLVN-GKLIHGLVVKSGLESV-VASQT 242

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           +L+  YS C  + ++ K F+ +     ++W S +           AL +F  M  C   P
Sbjct: 243 SLLTMYSKCNMVEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISP 302

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
           +  +F   L+  S    +  G+QIH    KLG D G+ +V +AL  +YGKC  +E + +V
Sbjct: 303 NHFTFSSILHACSSLAMLEAGEQIHAVTVKLGVD-GNKYVDAALIHLYGKCGNVEKARSV 361

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           FES     +   N+++ +   +G   +A+E+F  M   G   + VT  + L A + +   
Sbjct: 362 FESLTELDVVSINTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLV 421

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCS------LMDAYSRCGHIELSHQVFEKIPSPNVVC 485
             G       C I S   +N ++  +      ++D   R    E +  + E+  +P+V+ 
Sbjct: 422 EEG-------CQIFSLIRNNHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQ 474

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRG 513
           + +++N    +G    A   ++ M+ + 
Sbjct: 475 WRTLLNACKIHGEVEMAEKFMKKMLDQA 502



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 66/287 (22%), Positives = 136/287 (47%), Gaps = 1/287 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTI-DDFVKSGH 59
           M+ +++ P   T+ ++  +C ++  L +  L+      +   ++ +S  ++   + K   
Sbjct: 194 MVGSRIKPNEYTLASVLVSCGNLGDLVNGKLIHGLVVKSGLESVVASQTSLLTMYSKCNM 253

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  + K+F+ +     VT+   I G  +    + AL ++ EM+   I  +  TFSS+L  
Sbjct: 254 VEDSIKVFNSLAYASHVTWTSFIVGLVQNGREEIALSMFREMIRCSISPNHFTFSSILHA 313

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS+      G QIH   + LG   N Y+ + L+ LY + G   +A  +F+ L E ++ + 
Sbjct: 314 CSSLAMLEAGEQIHAVTVKLGVDGNKYVDAALIHLYGKCGNVEKARSVFESLTELDVVSI 373

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+ A+ +     E L ++ +MK  G +PN ++F  ++  C+   L++EG Q+ S +  
Sbjct: 374 NTMIYAYAQNGFGHEALELFERMKKLGHKPNVVTFISILLACNNAGLVEEGCQIFSLIRN 433

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
              +++       ++D         EA    +     DVI W ++++
Sbjct: 434 NHSIELTRDHYTCMIDLLGRAKRFEEAAMLIEEGKNPDVIQWRTLLN 480


>gi|449470293|ref|XP_004152852.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  278 bits (711), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 179/662 (27%), Positives = 330/662 (49%), Gaps = 29/662 (4%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           T+   A T + ++ + + L+L          ++ S  +    F   G +   ++LF+++ 
Sbjct: 19  TLLNNATTLSQLLQIQAQLILHGI-----HYDLSSITKLTHKFFDLGAVAHVRQLFNKVS 73

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESASTFSSVLSVCSNAGFYTEGI 130
             D+  +N+LI G      PK +++LY  +     ++    T++  +S  S       G+
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAASRLEDERVGV 133

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            +H   +  G   NL++GS +VDLY +   +  A  +FD +PER+   WN M+  F   S
Sbjct: 134 LLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS------IGM---LLDEGKQLHSHVIKLG 241
             ++ +R++  M   G+  +  +   ++   +      +GM    L   K LHS      
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHS------ 247

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
               +++V   L+  YS CG   + +  FD I   D+IS+N+++S Y        A+ LF
Sbjct: 248 ----DVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             +    +R +  + V  +       ++   + I     K+G       V +ALT +Y +
Sbjct: 304 RELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP-SVSTALTTVYCR 362

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
            N ++ +  +F+ +P +SL   N++++    +G    A+ +F  M+ + +  + VT+++ 
Sbjct: 363 LNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSI 421

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A +   + ++G  + +H        ESN+ VS +L+D Y++CG I  + Q+F+ +   
Sbjct: 422 LSACAQLGALSIG--KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK 479

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           NVV + +++ GY  +G G+EAL +   M+Q G+ P  VTFL +L  C+HSG+V EG  +F
Sbjct: 480 NVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF 539

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +SM + YG     +HY+CM+D+LGRAG L  A E +++ P      +W +LL +C +H N
Sbjct: 540 HSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKN 599

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             +    +  L +L+P +   Y  +SN YS    F  +  +R+    RKL +  G +LIE
Sbjct: 600 TEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIE 659

Query: 662 VN 663
           ++
Sbjct: 660 ID 661



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 233/503 (46%), Gaps = 17/503 (3%)

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L++ +NA   ++ +QI  +++  G   +L   + L   +  +G       LF+++ + +L
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDL 77

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQL 233
             +N+++R F +   P   + +Y  + K   + P+  ++ + +   S   L DE  G  L
Sbjct: 78  FLFNVLIRGFSDNGLPKSSIFLYTHLRKKTNLRPDNFTYAFAISAAS--RLEDERVGVLL 135

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+H I  G V  N+FV +A+VD Y        A+K FD +P  D + WN+++S ++    
Sbjct: 136 HAHSIVDG-VASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             D++ +F  M          +    L   +       G  I    +K G  H  V+V +
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGL-HSDVYVLT 253

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
            L  +Y KC        +F+      L   N++++    +   + AV +F  ++  G   
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG--- 310

Query: 414 DEVTLSTTLKALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
             V  ST +  + V    N L   RL+   ++K G     +VS +L   Y R   ++ + 
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           Q+F++ P  ++  + ++++GY++NG+   A+ + + M+ + L P+ VT   +L+ C   G
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLG 429

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +  G+ V   +KS   ++++    + ++DM  + G + +A +L        + + W+++
Sbjct: 430 ALSIGKWVHGLIKS-ERLESNVYVSTALVDMYAKCGSIVEARQLFDLMV-DKNVVTWNAM 487

Query: 593 LRSCRVHGNEIIGRRVANILMEL 615
           +    +HG+   G+    +  E+
Sbjct: 488 ITGYGLHGH---GKEALKLFYEM 507


>gi|302765565|ref|XP_002966203.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
 gi|300165623|gb|EFJ32230.1| hypothetical protein SELMODRAFT_86405 [Selaginella moellendorffii]
          Length = 916

 Score =  278 bits (711), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 175/634 (27%), Positives = 327/634 (51%), Gaps = 16/634 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC-GKFRHPKQALYLYD 99
           + +++ +   +D + K G + SA ++F  +   D++ +N  I  C G    P +AL L  
Sbjct: 163 ERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWNAAIMACAGNDERPDRALLLVR 222

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G+  + ++F ++LS C +         IH RV  LGF  ++ + + LV +Y R G
Sbjct: 223 RMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEELGFLGDVVVATALVTMYGRCG 282

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               ++ +F+ +  RN  +WN M+ AF +         +Y +M+ EG  PN ++F   ++
Sbjct: 283 SVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFAIYWRMQQEGFRPNKITFVTALK 342

Query: 220 GC--SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
               S    L E   LH  +   G ++ ++ V  ALV  Y + G++  A+ +FD IP  +
Sbjct: 343 AACSSSSQDLGESAALHGWIACAG-LEGDVMVGTALVTMYGSTGAIDRARAAFDAIPAKN 401

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           ++SWN++++ Y D     +A+ELF  M+     P+  S++  L       +V   + IH 
Sbjct: 402 IVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSYLAVLGCCE---DVSEARSIHA 458

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            V   G       + + +  M+ +   +E ++A F++   +     N+ + +L    ++ 
Sbjct: 459 EVVGNGLFAQESSIANGVVRMFARSGSLEEAMAAFDATVVKDSVSWNTKVAALSAREDLH 518

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG-SCRLLHCCAIKSGFESNIAVSC 456
            A+  F  M  EG   D+ TL + +   +   +  LG S +     AI+   E ++ V  
Sbjct: 519 GAITAFYTMQHEGFRPDKFTLVSVVDVCADLGTLELGRSIQQQLSAAIE--VERDVVVES 576

Query: 457 SLMDAYSRCGH-IELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           ++M+  ++CG  ++   ++F ++P    ++V + +++  Y+++G GR+AL +  +M QR 
Sbjct: 577 AVMNMVAKCGSSVDECERLFARMPDDRKDLVAWNTMIAAYAQHGHGRKALKLFRIMQQRS 636

Query: 514 LI-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILD 571
            + PD  TF+ VL+GC+H+G+V++G   F   + V GI+    +HY+C++D+LGR G L 
Sbjct: 637 SVRPDSSTFVSVLSGCSHAGLVEDGIHCFFLAREVLGIEQQPVEHYACLVDVLGRMGYLR 696

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +AE+ +++ P   D ++W+SLL +C  +G+   G R A   +EL   D   Y  +SN Y+
Sbjct: 697 EAEDFIRKMPLPADSVVWTSLLGACSSYGDLEGGERAARAFIELYRSDSVGYVVLSNIYA 756

Query: 632 EIGEFEVSMQIRETALARKL-TRDIGHSLIEVNS 664
             G +E S+++RE    R++  R  G S I V +
Sbjct: 757 AAGRWEDSIRVREDMAERRVKKRAPGKSSIVVKN 790



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 157/566 (27%), Positives = 268/566 (47%), Gaps = 41/566 (7%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T + +L  C       +G Q+H +++  G   N  +G+ LV +Y +      A   F  L
Sbjct: 26  TLAGLLRRCIGDADLAQGRQLHRQIVKQGLARNDLLGNYLVQMYSKCRSLDDANAAFSAL 85

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV---EPNGLSFCYMVRGCSIG---- 224
             R +ATWN ++ A    S P  V  +Y +MK E      PN L+   ++   + G    
Sbjct: 86  RSRGIATWNTLIAA---QSSPAAVFDLYTRMKLEERAENRPNRLTIIAVLGAIASGDPSS 142

Query: 225 --MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                 + + +H   I+   ++ ++FVA AL+D Y  CG +  A + F  I V D+I WN
Sbjct: 143 SSSSRAQARIVHDD-IRGSDLERDLFVATALLDAYGKCGCVESALEVFSRIQVPDLICWN 201

Query: 283 SIVSIYADYDLIFD-ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           + +   A  D   D AL L  RM L    P+  SFV  L+      ++   + IH  V +
Sbjct: 202 AAIMACAGNDERPDRALLLVRRMWLEGLLPNRASFVAILSSCGDHSSLPLARSIHARVEE 261

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LGF  G V V +AL  MYG+C  ++ S+AVFE+   R+    N+++ +    G+   A  
Sbjct: 262 LGF-LGDVVVATALVTMYGRCGSVDESIAVFEAMAVRNHVSWNAMIAAFAQCGHRSAAFA 320

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           ++  M  EG   +++T  T LKA   S+S +LG    LH     +G E ++ V  +L+  
Sbjct: 321 IYWRMQQEGFRPNKITFVTALKAACSSSSQDLGESAALHGWIACAGLEGDVMVGTALVTM 380

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y   G I+ +   F+ IP+ N+V + +++  Y  NG  REA+++   M ++ L P+KV++
Sbjct: 381 YGSTGAIDRARAAFDAIPAKNIVSWNAMLTAYGDNGRAREAMELFAAMKRQSLAPNKVSY 440

Query: 522 LCVLAGCN--------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           L VL  C         H+ +V  G  +F    S+          + ++ M  R+G L++A
Sbjct: 441 LAVLGCCEDVSEARSIHAEVVGNG--LFAQESSI---------ANGVVRMFARSGSLEEA 489

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE---PVDFAVYSQVSNFY 630
                 T    D + W++ + +      ++ G   A   M+ E   P  F + S V +  
Sbjct: 490 MAAFDATV-VKDSVSWNTKVAALSAR-EDLHGAITAFYTMQHEGFRPDKFTLVS-VVDVC 546

Query: 631 SEIGEFEVSMQIRET-ALARKLTRDI 655
           +++G  E+   I++  + A ++ RD+
Sbjct: 547 ADLGTLELGRSIQQQLSAAIEVERDV 572


>gi|297817672|ref|XP_002876719.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322557|gb|EFH52978.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 1005

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 177/619 (28%), Positives = 317/619 (51%), Gaps = 10/619 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           N  +  + K+ HL++AK+LFD    + D V +N ++S         + L L+ EM   G 
Sbjct: 201 NALVSMYAKTDHLSAAKRLFDASQEKGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGP 260

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             ++ T  S L+ C    +   G +IH  VL       +Y+ + L+ +Y R G  + A  
Sbjct: 261 ASNSYTIVSALTACEGFSYAKLGKEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGR 320

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +   +   ++ TWN +++ + +     E L+ +  M A G +P+ +S   ++        
Sbjct: 321 ILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSN 380

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L  G +LH++VIK GW D N+ V N L+D YS C       ++F  +   D+ISW +I++
Sbjct: 381 LLAGMELHAYVIKHGW-DSNLLVGNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIA 439

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGF 344
            YA  D   +AL+LF    + +KR  I   +    L   S   ++   K+IH ++ + G 
Sbjct: 440 GYALNDCHVEALQLF--RDVAKKRMEIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGL 497

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
                 +Q+ L D+YGKC  +  +  VFES  G+ +    S+++S   +GN  +AVE+F 
Sbjct: 498 I--DTVIQNELVDVYGKCRNMGYASRVFESIKGKDVVSWTSMISSSALNGNENEAVELFR 555

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M + G+  D V L   L A +  ++   G  R +H   ++ GF    +++ +++D Y+ 
Sbjct: 556 RMAETGLLADSVALLCILSAAASLSALKKG--REIHGYLLRKGFCLEGSIAVAVVDMYAC 613

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG ++ +  VF++I    ++ +TS++N Y  +G G+ ++++   M    + PD ++FL +
Sbjct: 614 CGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASVELFNKMRHENVSPDHISFLAL 673

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  C+H+G++ EG+     M+  Y ++   +HY C++DMLGRA  + +A E ++      
Sbjct: 674 LYACSHAGLLDEGRRFLKIMELEYKLEPWPEHYVCLVDMLGRANCVVEAFEFVKMMKTEP 733

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
              +W +LL +CR H  + IG   A  L+ELEP +      VSN ++E G +    ++R 
Sbjct: 734 TTEVWCALLAACRSHSEKEIGEIAAQRLLELEPKNPGNLVLVSNVFAEQGRWNDVEKVRA 793

Query: 645 TALARKLTRDIGHSLIEVN 663
              A  + +  G S IE++
Sbjct: 794 KMKASGMEKHPGCSWIEMD 812



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 138/540 (25%), Positives = 256/540 (47%), Gaps = 8/540 (1%)

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           S +K+FDEM  R    +N LI        P  AL++Y  M   G+     +F  +L  C 
Sbjct: 114 SQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFPVLLKACG 173

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT-WN 180
                  G ++HC ++ LGF    +I + LV +Y +      A  LFD   E+  A  WN
Sbjct: 174 KLRDIRSGTELHCMLVKLGFNSTGFIVNALVSMYAKTDHLSAAKRLFDASQEKGDAVLWN 233

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            +L ++    +  E L+++ +M+  G   N  +    +  C        GK++H+ V+K 
Sbjct: 234 SILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLGKEIHAAVLK- 292

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
                 ++V NAL+  Y+ CG ++EA +    +   DV++WNS++  Y    +  +AL+ 
Sbjct: 293 STHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQF 352

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F  M     +P   S    +  + R  N+  G ++H YV K G+D  ++ V + L DMY 
Sbjct: 353 FCDMIAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWD-SNLLVGNTLIDMYS 411

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           KCN+       F     + L    +++     +    +A+++F  +  + + +DE+ L +
Sbjct: 412 KCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGS 471

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L+A SV  S  +   + +HC  ++ G    + +   L+D Y +C ++  + +VFE I  
Sbjct: 472 ILRACSVLKSMLI--VKEIHCHILRKGLIDTV-IQNELVDVYGKCRNMGYASRVFESIKG 528

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            +VV +TS+++  + NG   EA+++   M + GL+ D V  LC+L+       +K+G+ +
Sbjct: 529 KDVVSWTSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREI 588

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
              +    G   +      ++DM    G L  A+ +  +    G  + ++S++ +  +HG
Sbjct: 589 HGYLLR-KGFCLEGSIAVAVVDMYACCGDLQSAKAVFDRIERKG-LLQYTSMINAYGMHG 646



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 190/386 (49%), Gaps = 5/386 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
             +Y  N  I  + + G +  A ++   M   D+VT+N LI G  +    K+AL  + +M
Sbjct: 297 FEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQNLMYKEALQFFCDM 356

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           ++ G K    + +SV++          G+++H  V+  G+  NL +G+ L+D+Y +   +
Sbjct: 357 IAAGHKPDEVSLTSVIAASGRLSNLLAGMELHAYVIKHGWDSNLLVGNTLIDMYSKCNLT 416

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
                 F  + E++L +W  ++  +       E L+++  +  + +E + +    ++R C
Sbjct: 417 CYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRMEIDEMMLGSILRAC 476

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S+   +   K++H H+++ G +D    + N LVD Y  C ++  A + F+ I   DV+SW
Sbjct: 477 SVLKSMLIVKEIHCHILRKGLIDT--VIQNELVDVYGKCRNMGYASRVFESIKGKDVVSW 534

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            S++S  A      +A+ELF RM          + +  L+ A+    +  G++IHGY+ +
Sbjct: 535 TSMISSSALNGNENEAVELFRRMAETGLLADSVALLCILSAAASLSALKKGREIHGYLLR 594

Query: 342 LGF-DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            GF   GS+ V  A+ DMY  C  ++S+ AVF+    + L    S++ +    G  K +V
Sbjct: 595 KGFCLEGSIAV--AVVDMYACCGDLQSAKAVFDRIERKGLLQYTSMINAYGMHGCGKASV 652

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALS 426
           E+F  M  E +  D ++    L A S
Sbjct: 653 ELFNKMRHENVSPDHISFLALLYACS 678



 Score = 91.7 bits (226), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/410 (21%), Positives = 184/410 (44%), Gaps = 41/410 (10%)

Query: 260 CGS--LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
           CG    +  +K FD +      +WN+++  Y        AL ++  M++      + SF 
Sbjct: 107 CGKSRALSQEKVFDEMRDRTAFAWNALIGAYVSNGEPASALFIYRNMRVEGVPLDLYSFP 166

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             L    +  ++  G ++H  + KLGF+  +  + +AL  MY K + + ++  +F+++  
Sbjct: 167 VLLKACGKLRDIRSGTELHCMLVKLGFN-STGFIVNALVSMYAKTDHLSAAKRLFDASQE 225

Query: 378 RSLEC-CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
           +      NS+++S   SG   + +++F  M   G   +  T+ + L A    + A LG  
Sbjct: 226 KGDAVLWNSILSSYSTSGKSLETLQLFREMQMTGPASNSYTIVSALTACEGFSYAKLG-- 283

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           + +H   +KS     + V  +L+  Y+RCG +  + ++   + + +VV + S++ GY +N
Sbjct: 284 KEIHAAVLKSTHSFEVYVCNALIAMYARCGKMLEAGRILRLMNNADVVTWNSLIKGYVQN 343

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
            M +EAL     MI  G  PD+V+   V+A       +  G +  ++    +G D++   
Sbjct: 344 LMYKEALQFFCDMIAAGHKPDEVSLTSVIAASGRLSNLLAG-MELHAYVIKHGWDSNLLV 402

Query: 557 YSCMIDM---------LGRAGILDKAEELLQQTP-----GGGDC---------------- 586
            + +IDM         +GRA ++   ++L+  T         DC                
Sbjct: 403 GNTLIDMYSKCNLTCYMGRAFLMMHEKDLISWTTIIAGYALNDCHVEALQLFRDVAKKRM 462

Query: 587 ----MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
               MM  S+LR+C V  + +I + +   ++    +D  + +++ + Y +
Sbjct: 463 EIDEMMLGSILRACSVLKSMLIVKEIHCHILRKGLIDTVIQNELVDVYGK 512


>gi|168068035|ref|XP_001785902.1| predicted protein [Physcomitrella patens subsp. patens]
 gi|162662428|gb|EDQ49285.1| predicted protein [Physcomitrella patens subsp. patens]
          Length = 908

 Score =  278 bits (710), Expect = 8e-72,   Method: Compositional matrix adjust.
 Identities = 170/625 (27%), Positives = 322/625 (51%), Gaps = 7/625 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++   N  +  + KSG ++ A+ +FD M  RD+ ++ ++I G  +    ++A  L+ +M
Sbjct: 164 LDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQM 223

Query: 102 VSHGIKESASTFSSVL--SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
              G   + +T+ S+L  S  ++ G      ++H      GF  +L +G+ L+ +Y + G
Sbjct: 224 ERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFISDLRVGNALIHMYAKCG 283

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD + +R++ +WN M+    +     E   ++ KM+ EG  P+  ++  ++ 
Sbjct: 284 SIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLN 343

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                   +  K++H H +++G V  ++ V +A V  Y  CGS+ +A+  FD + V +V 
Sbjct: 344 THVSTGAWEWVKEVHKHAVEVGLVS-DLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVT 402

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WN+++   A      +AL LF +M+     P   +FV  L+       + + K++H Y 
Sbjct: 403 TWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSANVGEEALEWVKEVHSYA 462

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
              G     + V +AL  MY KC     +  VF+    R++     +++ L   G   +A
Sbjct: 463 IDAGLV--DLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHEA 520

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
             +F  M+ EGI  D  T  + L A   +++  L   + +H  A+ +G  S++ V  +L+
Sbjct: 521 FSLFLQMLREGIVPDATTYVSILSA--CASTGALEWVKEVHSHAVNAGLVSDLRVGNALV 578

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y++CG ++ + +VF+ +   +V  +T ++ G +++G G +ALD+   M   G  P+  
Sbjct: 579 HMYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGY 638

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +F+ VL+ C+H+G+V EG+  F S+   YGI+   +HY+CM+D+LGRAG L++A+  +  
Sbjct: 639 SFVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILN 698

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P       W +LL +C  +GN  +    A   ++L+P   + Y  +SN Y+  G +E  
Sbjct: 699 MPIEPGDAPWGALLGACVTYGNLEMAEFAAKERLKLKPKSASTYVLLSNIYAATGNWEQK 758

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
           + +R     R + ++ G S IEV++
Sbjct: 759 LLVRSMMQRRGIRKEPGRSWIEVDN 783



 Score =  224 bits (570), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 147/600 (24%), Positives = 304/600 (50%), Gaps = 18/600 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T  ++   C S V L     + ++  Q   Q ++      ++ +VK G ++ A+ +
Sbjct: 28  PNEITYLSILKACCSPVSLKWGKKIHAHIIQSGFQSDVRVETALVNMYVKCGSIDDAQLI 87

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD+M  R+++++ ++I G   +   ++A + + +M   G   ++ T+ S+L+  ++AG  
Sbjct: 88  FDKMVERNVISWTVMIGGLAHYGRGQEAFHRFLQMQREGFIPNSYTYVSILNANASAGAL 147

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
               ++H   ++ G  L+L +G+ LV +Y + G    A  +FD + ER++ +W +M+   
Sbjct: 148 EWVKEVHSHAVNAGLALDLRVGNALVHMYAKSGSIDDARVVFDGMVERDIFSWTVMIGGL 207

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML--LDEGKQLHSHVIKLGWVD 244
            +  R  E   ++ +M+  G  PN  ++  ++   +I     L+  K++H H  K G++ 
Sbjct: 208 AQHGRGQEAFSLFLQMERGGCLPNLTTYLSILNASAITSTGALEWVKEVHKHAGKAGFIS 267

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++ V NAL+  Y+ CGS+ +A+  FD +   DVISWN+++   A      +A  +F +M
Sbjct: 268 -DLRVGNALIHMYAKCGSIDDARLVFDGMCDRDVISWNAMIGGLAQNGCGHEAFTIFLKM 326

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           Q     P   +++  LN    TG   + K++H +  ++G     + V SA   MY +C  
Sbjct: 327 QQEGFVPDSTTYLSLLNTHVSTGAWEWVKEVHKHAVEVGLV-SDLRVGSAFVHMYIRCGS 385

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           I+ +  +F+    R++   N+++  +      ++A+ +F  M  EG   D  T    L A
Sbjct: 386 IDDAQLIFDKLAVRNVTTWNAMIGGVAQQKCGREALSLFLQMRREGFFPDATTFVNILSA 445

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +V   A L   + +H  AI +G   ++ V  +L+  Y++CG+   + QVF+ +   NV 
Sbjct: 446 -NVGEEA-LEWVKEVHSYAIDAGL-VDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVT 502

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T +++G +++G G EA  +   M++ G++PD  T++ +L+ C  +G ++  + V +  
Sbjct: 503 TWTVMISGLAQHGCGHEAFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHA 562

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKA----EELLQQTPGGGDCMMWSSLLRSCRVHG 600
            +  G+ +D +  + ++ M  + G +D A    +++L++     D   W+ ++     HG
Sbjct: 563 VNA-GLVSDLRVGNALVHMYAKCGSVDDARRVFDDMLER-----DVYSWTVMIGGLAQHG 616



 Score =  199 bits (505), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 147/593 (24%), Positives = 284/593 (47%), Gaps = 24/593 (4%)

Query: 81  LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140
           +I G  ++ + + A+ +Y +M   G + +  T+ S+L  C +      G +IH  ++  G
Sbjct: 1   MIGGYAEYGYAEDAMKVYSQMRREGGQPNEITYLSILKACCSPVSLKWGKKIHAHIIQSG 60

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
           F  ++ + + LV++Y++ G    A  +FD++ ERN+ +W +M+       R  E    + 
Sbjct: 61  FQSDVRVETALVNMYVKCGSIDDAQLIFDKMVERNVISWTVMIGGLAHYGRGQEAFHRFL 120

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M+ EG  PN  ++  ++   +    L+  K++HSH +  G + +++ V NALV  Y+  
Sbjct: 121 QMQREGFIPNSYTYVSILNANASAGALEWVKEVHSHAVNAG-LALDLRVGNALVHMYAKS 179

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
           GS+ +A+  FD +   D+ SW  ++   A +    +A  LF +M+     P++ +++  L
Sbjct: 180 GSIDDARVVFDGMVERDIFSWTVMIGGLAQHGRGQEAFSLFLQMERGGCLPNLTTYLSIL 239

Query: 321 NFA--SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
           N +  + TG + + K++H +  K GF    + V +AL  MY KC  I+ +  VF+    R
Sbjct: 240 NASAITSTGALEWVKEVHKHAGKAGFI-SDLRVGNALIHMYAKCGSIDDARLVFDGMCDR 298

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
            +   N+++  L  +G   +A  +F  M  EG   D  T  + L    VS  A     + 
Sbjct: 299 DVISWNAMIGGLAQNGCGHEAFTIFLKMQQEGFVPDSTTYLSLLNT-HVSTGA-WEWVKE 356

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +H  A++ G  S++ V  + +  Y RCG I+ +  +F+K+   NV  + +++ G ++   
Sbjct: 357 VHKHAVEVGLVSDLRVGSAFVHMYIRCGSIDDAQLIFDKLAVRNVTTWNAMIGGVAQQKC 416

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA---DRQ 555
           GREAL +   M + G  PD  TF+ +L     S  V E  L +      Y IDA   D +
Sbjct: 417 GREALSLFLQMRREGFFPDATTFVNIL-----SANVGEEALEWVKEVHSYAIDAGLVDLR 471

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
             + ++ M  + G    A+++        +   W+ ++     HG    G    ++ +++
Sbjct: 472 VGNALVHMYAKCGNTMYAKQVFDDMV-ERNVTTWTVMISGLAQHG---CGHEAFSLFLQM 527

Query: 616 --EPV--DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
             E +  D   Y  + +  +  G  E   ++   A+   L  D  +G++L+ +
Sbjct: 528 LREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVHM 580



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 79/296 (26%), Positives = 149/296 (50%), Gaps = 2/296 (0%)

Query: 34  SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           SY      +++   N  +  + K G+   AK++FD+M  R++ T+ ++ISG  +     +
Sbjct: 460 SYAIDAGLVDLRVGNALVHMYAKCGNTMYAKQVFDDMVERNVTTWTVMISGLAQHGCGHE 519

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           A  L+ +M+  GI   A+T+ S+LS C++ G      ++H   ++ G   +L +G+ LV 
Sbjct: 520 AFSLFLQMLREGIVPDATTYVSILSACASTGALEWVKEVHSHAVNAGLVSDLRVGNALVH 579

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A  +FD++ ER++ +W +M+    +  R  + L ++ KMK EG +PNG S
Sbjct: 580 MYAKCGSVDDARRVFDDMLERDVYSWTVMIGGLAQHGRGLDALDLFVKMKLEGFKPNGYS 639

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  ++  CS   L+DEG++    + +   ++  +     +VD     G L EAK     +
Sbjct: 640 FVAVLSACSHAGLVDEGRRQFLSLTQDYGIEPTMEHYTCMVDLLGRAGQLEEAKHFILNM 699

Query: 274 PVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
           P++     W +++     Y  + +  E   + +L  K  S  ++V   N  + TGN
Sbjct: 700 PIEPGDAPWGALLGACVTYGNL-EMAEFAAKERLKLKPKSASTYVLLSNIYAATGN 754


>gi|357516843|ref|XP_003628710.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355522732|gb|AET03186.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 748

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 180/624 (28%), Positives = 314/624 (50%), Gaps = 79/624 (12%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           + ++L +C     +T+   +H  ++        ++ + L+  Y ++G    A  +FD++P
Sbjct: 12  YCALLKLCCETHNFTKAKNLHSHIIKTLPYPETFLLNNLISSYAKLGSIPYACKVFDQMP 71

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPN----GLSFCYMV--------- 218
             NL +WN +L A+ +L R  E+  +++ M + +GV  N    G + C ++         
Sbjct: 72  HPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYNL 131

Query: 219 ------------------------RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
                                   RGC     +  G+Q+H HV+K G++   +FV + LV
Sbjct: 132 MLKNDGSFNLNRITFSTLLILASKRGC-----VKLGRQIHGHVVKFGFMSY-VFVGSPLV 185

Query: 255 DFYSACGSLIEAKKSFDFIPVDDV-------------------------------ISWNS 283
           D YS  G +  A+K FD +P  +V                               ISW S
Sbjct: 186 DMYSKMGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTS 245

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +++ +    L  DA+++F  M+L   +    +F   L        +  GKQ+H Y+ +  
Sbjct: 246 MITGFTQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTD 305

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           +   ++ V SAL DMY KC  I+S+ AVF+    +++    +++     +G  ++AV+ F
Sbjct: 306 YKD-NIFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTF 364

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M   GI  D+ TL + + + +  AS   G+    H  A+ SG  S I VS +L+  Y 
Sbjct: 365 SDMQKYGIEPDDFTLGSVISSCANLASLEEGA--QFHARALTSGLISFITVSNALVTLYG 422

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG IE SH++F +I   + V +T++++GY++ G   E + + E M+  GL PDKVTF+ 
Sbjct: 423 KCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIG 482

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL+ C+ +G+V++G  +F SM + +GI   + HY+CMID+  RAG +++A   + + P  
Sbjct: 483 VLSACSRAGLVEKGNQIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFS 542

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
            D + W++LL SCR +GN  IG+  A  LMEL+P + A Y  +S+ Y+  G++E   ++R
Sbjct: 543 PDAISWATLLSSCRFYGNMDIGKWAAEFLMELDPHNTASYVLLSSVYAAKGKWEEVARLR 602

Query: 644 ETALARKLTRDIGHSLIEV-NSCH 666
           +    + L ++ G S I+  N  H
Sbjct: 603 KDMRDKGLRKEPGCSWIKYKNQVH 626



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 136/504 (26%), Positives = 236/504 (46%), Gaps = 40/504 (7%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N+YS N  +  + K G ++  + LFD MP RD V++N LISG        Q++  Y+
Sbjct: 71  PHPNLYSWNTILSAYSKLGRVSEMEYLFDAMPRRDGVSWNSLISGYAGCGLIYQSVKAYN 130

Query: 100 EMVSH--GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
            M+ +      +  TFS++L + S  G    G QIH  V+  GF   +++GSPLVD+Y +
Sbjct: 131 LMLKNDGSFNLNRITFSTLLILASKRGCVKLGRQIHGHVVKFGFMSYVFVGSPLVDMYSK 190

Query: 158 MGPSVRALDLFDELPERNLATWNLML-------------RAFCELSRPDEV--------- 195
           MG    A  +FDELPE+N+  +N ++             R F E+   D +         
Sbjct: 191 MGMISCARKVFDELPEKNVVMYNTLIMGLMRCGRVEDSKRLFFEMRERDSISWTSMITGF 250

Query: 196 ---------LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                    + ++ +MK E ++ +  +F  ++  C   M L EGKQ+H+++I+  + D N
Sbjct: 251 TQNGLDRDAIDIFREMKLENLQMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYKD-N 309

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           IFVA+ALVD Y  C ++  A+  F  +   +V+SW +++  Y       +A++ F  MQ 
Sbjct: 310 IFVASALVDMYCKCKNIKSAEAVFKKMTCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQK 369

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
               P   +    ++  +   ++  G Q H      G     + V +AL  +YGKC  IE
Sbjct: 370 YGIEPDDFTLGSVISSCANLASLEEGAQFHARALTSGLI-SFITVSNALVTLYGKCGSIE 428

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            S  +F     +      +L++     G   + + +F  M+  G+  D+VT    L A S
Sbjct: 429 DSHRLFNEISFKDEVTWTALVSGYAQFGKANETIGLFESMLAHGLKPDKVTFIGVLSACS 488

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVC 485
            +     G+ ++      + G          ++D +SR G IE +     K+P SP+ + 
Sbjct: 489 RAGLVEKGN-QIFESMINEHGIVPIQDHYTCMIDLFSRAGRIEEARNFINKMPFSPDAIS 547

Query: 486 FTSIMNG---YSRNGMGREALDML 506
           + ++++    Y    +G+ A + L
Sbjct: 548 WATLLSSCRFYGNMDIGKWAAEFL 571



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 74/301 (24%), Positives = 157/301 (52%), Gaps = 9/301 (2%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T  ++   C  ++ L     + +Y  + + + NI+ ++  +D + K  ++ SA+ +F +M
Sbjct: 277 TFGSVLTACGGVMALQEGKQVHAYIIRTDYKDNIFVASALVDMYCKCKNIKSAEAVFKKM 336

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +++V++  ++ G G+  + ++A+  + +M  +GI+    T  SV+S C+N     EG 
Sbjct: 337 TCKNVVSWTAMLVGYGQNGYSEEAVKTFSDMQKYGIEPDDFTLGSVISSCANLASLEEGA 396

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q H R L+ G    + + + LV LY + G    +  LF+E+  ++  TW  ++  + +  
Sbjct: 397 QFHARALTSGLISFITVSNALVTLYGKCGSIEDSHRLFNEISFKDEVTWTALVSGYAQFG 456

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI-KLGWVDVNIFV 249
           + +E + ++  M A G++P+ ++F  ++  CS   L+++G Q+   +I + G V +    
Sbjct: 457 KANETIGLFESMLAHGLKPDKVTFIGVLSACSRAGLVEKGNQIFESMINEHGIVPIQDHY 516

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---IYADYDLIFDALELFFRMQ 305
              ++D +S  G + EA+   + +P   D ISW +++S    Y + D+   A E  F M+
Sbjct: 517 T-CMIDLFSRAGRIEEARNFINKMPFSPDAISWATLLSSCRFYGNMDIGKWAAE--FLME 573

Query: 306 L 306
           L
Sbjct: 574 L 574


>gi|449443185|ref|XP_004139361.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
 gi|449525900|ref|XP_004169954.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Cucumis sativus]
          Length = 562

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 162/561 (28%), Positives = 308/561 (54%), Gaps = 12/561 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL--YMRMGPSVRALDLF 168
             + +V+S         E  QIH  +++     N+   S L+D      +G    A  +F
Sbjct: 3   QNYYTVMSFLEKCKTMKELKQIHSLMITTSVVKNIIPCSRLIDFCANSELGDIEYARTVF 62

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D++ +R +  WN M++ +C        L MY +M+ +G  P+  +F ++++ CSI  LL 
Sbjct: 63  DQINQRTVYIWNSMIKGYCNGGDKFGALFMYEEMQRKGFSPDHFTFPFVLKVCSIIDLLV 122

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G+ +H+ ++K G+ +++++ ++ L++ Y +CG L    K F+FIP  +V++W S+++ +
Sbjct: 123 YGQSVHNRIVKTGF-ELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGF 181

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG- 347
            + D   +AL LF  M+     P+  +    L  A+R  +++ GK +H  + +LGFD   
Sbjct: 182 VNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFD 241

Query: 348 -----SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
                +V + +A+ DMY KC  + ++  +F+  P R+L   NS++++    G   +A+ +
Sbjct: 242 TNSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRL 301

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M   G   ++ T  + + A +     + G  R LH  A+++ F   +A+  +LMD Y
Sbjct: 302 FVDMEMAGFVPNKATFLSVISACTHMGFRSTG--RSLHARALRASFHEFVAIGTALMDMY 359

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTF 521
           ++ G  + + ++F K+   +V+ +T++++G +  G G+EAL++   M +   + PD++T+
Sbjct: 360 AKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITY 419

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL  C+H G+V+EGQ  F SM  VYGI+   +HY CMID+L RAG   +AEELL + P
Sbjct: 420 IAVLWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMP 479

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              +  + SS+L  C ++GN  +  RV + ++ELE     VY  +SN +++   ++    
Sbjct: 480 TQPNATILSSILNGCEMYGNVGLANRVKSHIVELENSSSGVYVLLSNIHAKACNWQEMKL 539

Query: 642 IRETALARKLTRDIGHSLIEV 662
            R+    + + + +G+S +E+
Sbjct: 540 ARDMLKHKNIGKTLGNSFVEI 560



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 126/460 (27%), Positives = 226/460 (49%), Gaps = 12/460 (2%)

Query: 43  NIYSSNRTIDDFVKS--GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           NI   +R ID    S  G +  A+ +FD++  R +  +N +I G         AL++Y+E
Sbjct: 36  NIIPCSRLIDFCANSELGDIEYARTVFDQINQRTVYIWNSMIKGYCNGGDKFGALFMYEE 95

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G      TF  VL VCS       G  +H R++  GF L++Y  S L+++Y+  G 
Sbjct: 96  MQRKGFSPDHFTFPFVLKVCSIIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGD 155

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
               L +F+ +P+ N+  W  ++  F    +P E LR++  M+ EGVEPN ++    +  
Sbjct: 156 LNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAA 215

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVD------VNIFVANALVDFYSACGSLIEAKKSFDFIP 274
            +    +  GK +H  + +LG+         N+ +A A++D Y+ CG L+ A+  FD +P
Sbjct: 216 AARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMDMYAKCGKLVTARNLFDKMP 275

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             +++ WNS++S Y+ Y    +AL LF  M++    P+  +F+  ++  +  G    G+ 
Sbjct: 276 QRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKATFLSVISACTHMGFRSTGRS 335

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H    +  F H  V + +AL DMY K    ++++ +F     + +    ++++ L   G
Sbjct: 336 LHARALRASF-HEFVAIGTALMDMYAKAGDADTALKIFSKLRKKDVMAWTTMISGLAIQG 394

Query: 395 NIKDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
             K+A+ +F  M +E  +  D++T    L A S       G  +      +  G E  + 
Sbjct: 395 KGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKQFTSMTEV-YGIEPTME 453

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNG 492
               ++D  SR GH + + ++  K+P+ PN    +SI+NG
Sbjct: 454 HYGCMIDLLSRAGHSKEAEELLMKMPTQPNATILSSILNG 493



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 78/272 (28%), Positives = 146/272 (53%), Gaps = 8/272 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L++Y+S+  ++ +V  G LNS  K+F+ +P  ++V +  LI+G      PK+AL L+ +
Sbjct: 137 ELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKD 196

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG-------LNLYIGSPLVD 153
           M + G++ +  T ++ L+  +       G  +H R+  LGF         N+ + + ++D
Sbjct: 197 MENEGVEPNEITMTTALAAAARCRDIHTGKLVHDRLRQLGFDPFDTNSCFNVILATAIMD 256

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G  V A +LFD++P+RNL  WN M+ A+ +  R  E LR++  M+  G  PN  +
Sbjct: 257 MYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLFVDMEMAGFVPNKAT 316

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  ++  C+       G+ LH+  ++  + +  + +  AL+D Y+  G    A K F  +
Sbjct: 317 FLSVISACTHMGFRSTGRSLHARALRASFHEF-VAIGTALMDMYAKAGDADTALKIFSKL 375

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
              DV++W +++S  A      +AL +F RM+
Sbjct: 376 RKKDVMAWTTMISGLAIQGKGKEALNVFRRME 407



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 64/239 (26%), Positives = 127/239 (53%), Gaps = 1/239 (0%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N   N+  +   +D + K G L +A+ LFD+MP R++V +N +IS   ++    +AL L+
Sbjct: 243 NSCFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAYSQYGRGAEALRLF 302

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            +M   G   + +TF SV+S C++ GF + G  +H R L   F   + IG+ L+D+Y + 
Sbjct: 303 VDMEMAGFVPNKATFLSVISACTHMGFRSTGRSLHARALRASFHEFVAIGTALMDMYAKA 362

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYM 217
           G +  AL +F +L ++++  W  M+       +  E L ++ +M+ E  V P+ +++  +
Sbjct: 363 GDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITYIAV 422

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +  CS   L++EG++  + + ++  ++  +     ++D  S  G   EA++    +P  
Sbjct: 423 LWACSHLGLVEEGQKQFTSMTEVYGIEPTMEHYGCMIDLLSRAGHSKEAEELLMKMPTQ 481


>gi|359478743|ref|XP_002282912.2| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Vitis vinifera]
          Length = 642

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 154/521 (29%), Positives = 287/521 (55%), Gaps = 36/521 (6%)

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           N  +WN+ +R F +   P E + +Y + ++ +G +P+  ++  + + C+   L+  G ++
Sbjct: 70  NTFSWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEI 129

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
             HV+ LG+ D +IFV+NA++    +CG L  A+K FD   V D++SWNS+++ Y     
Sbjct: 130 LGHVLHLGF-DSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGW 188

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
            ++AL  +  M++   +P   + +  ++  ++  ++  G++ H Y+ + G    +V + +
Sbjct: 189 AYEALNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKL-TVPLAN 247

Query: 354 ALTDMYGKCNVIESSVAVFES-------------------------------APGRSLEC 382
           AL DMY KC  +ES+  +F+S                                P + +  
Sbjct: 248 ALMDMYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVP 307

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            N+++   +H+   K+A+ +F  M    I  DEVT+ + L A S   + ++G    +H  
Sbjct: 308 WNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGI--WIHHY 365

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
             K     N+A+  +L+D Y++CG I  + QVF+++P  N + +T+I++G + +G    A
Sbjct: 366 IEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGA 425

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           +     MI   ++PD+VTFL +L+ C H G+V+EG+  F+ M S + +    +HYSCM+D
Sbjct: 426 IAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHYSCMVD 485

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622
           +LGRAG+L++AEEL++  P   D ++W +L  +CR+HGN ++G R A+ L++++P D  +
Sbjct: 486 LLGRAGLLEEAEELIKSMPIEADAVVWGALFFACRIHGNVLMGERAASKLLQMDPHDSGI 545

Query: 623 YSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           Y  ++N Y E   ++ + + R+    R + +  G S IEVN
Sbjct: 546 YVLLANMYGEAEMWKEAGKARKLMRQRGVEKTPGCSSIEVN 586



 Score =  154 bits (390), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 112/435 (25%), Positives = 196/435 (45%), Gaps = 35/435 (8%)

Query: 77  TYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
           ++N+ I G     +P++A+ LY  ++   G K    T+  +   C+       G +I   
Sbjct: 73  SWNVAIRGFLDSENPREAVVLYKRVLQCDGTKPDNYTYPLLFKACARLSLIRMGSEILGH 132

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
           VL LGF  ++++ + ++ L +  G    A  +FD+   R+L +WN M+  +       E 
Sbjct: 133 VLHLGFDSDIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEA 192

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L  Y +MK EG++P+ ++   +V  C+    LD G++ H ++ + G + + + +ANAL+D
Sbjct: 193 LNFYREMKVEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENG-LKLTVPLANALMD 251

Query: 256 FYSACGSLIEAKKSFDF-------------------------------IPVDDVISWNSI 284
            Y  CG+L  A+K FD                                +P  DV+ WN++
Sbjct: 252 MYMKCGNLESARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAM 311

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  Y   +   +AL LF  MQ     P   + V  L+  S+ G +  G  IH Y+ K   
Sbjct: 312 IGGYVHANRGKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHEL 371

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              +V + +AL DMY KC  I  ++ VF+  PGR+     ++++ L   GN   A+  F 
Sbjct: 372 SL-NVALGTALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFS 430

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+D  +  DEVT    L A         G  +     + K      +     ++D   R
Sbjct: 431 EMIDNSVMPDEVTFLGLLSACCHGGLVEEGR-KYFSQMSSKFNLSPKLKHYSCMVDLLGR 489

Query: 465 CGHIELSHQVFEKIP 479
            G +E + ++ + +P
Sbjct: 490 AGLLEEAEELIKSMP 504



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/366 (26%), Positives = 170/366 (46%), Gaps = 34/366 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I+ SN  I   V  G L+ A+K+FD+   RD+V++N +I+G  +     +AL  Y EM 
Sbjct: 141 DIFVSNAVIHLLVSCGDLDGARKMFDKSCVRDLVSWNSMINGYVRRGWAYEALNFYREMK 200

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG--P 160
             GIK    T   V+S C+       G + HC +   G  L + + + L+D+YM+ G   
Sbjct: 201 VEGIKPDEVTMIGVVSSCAQLEDLDLGRESHCYIEENGLKLTVPLANALMDMYMKCGNLE 260

Query: 161 SVR-----------------------------ALDLFDELPERNLATWNLMLRAFCELSR 191
           S R                             A  LFDE+P++++  WN M+  +   +R
Sbjct: 261 SARKLFDSMTNKTMVSWTTMVVGYAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANR 320

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
             E L ++N+M+A  + P+ ++    +  CS    LD G  +H H I+   + +N+ +  
Sbjct: 321 GKEALALFNEMQAMNINPDEVTMVSCLSACSQLGALDVGIWIH-HYIEKHELSLNVALGT 379

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           AL+D Y+ CG + +A + F  +P  + ++W +I+S  A +     A+  F  M      P
Sbjct: 380 ALIDMYAKCGKITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMP 439

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
              +F+  L+     G V  G++    + +K        H  S + D+ G+  ++E +  
Sbjct: 440 DEVTFLGLLSACCHGGLVEEGRKYFSQMSSKFNLSPKLKHY-SCMVDLLGRAGLLEEAEE 498

Query: 371 VFESAP 376
           + +S P
Sbjct: 499 LIKSMP 504



 Score =  119 bits (297), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 69/232 (29%), Positives = 118/232 (50%), Gaps = 1/232 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + +SG L+ A KLFDEMP +D+V +N +I G       K+AL L++EM +  I     T 
Sbjct: 284 YAQSGLLDMAWKLFDEMPDKDVVPWNAMIGGYVHANRGKEALALFNEMQAMNINPDEVTM 343

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            S LS CS  G    GI IH  +      LN+ +G+ L+D+Y + G   +A+ +F ELP 
Sbjct: 344 VSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGKITKAIQVFQELPG 403

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           RN  TW  ++            +  +++M    V P+ ++F  ++  C  G L++EG++ 
Sbjct: 404 RNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSACCHGGLVEEGRKY 463

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSI 284
            S +     +   +   + +VD     G L EA++    +P++ D + W ++
Sbjct: 464 FSQMSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADAVVWGAL 515



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 47/189 (24%), Positives = 85/189 (44%), Gaps = 5/189 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M +  + P   T+ +    C+ +  L   + +  Y + +   LN+      ID + K G 
Sbjct: 331 MQAMNINPDEVTMVSCLSACSQLGALDVGIWIHHYIEKHELSLNVALGTALIDMYAKCGK 390

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A ++F E+P R+ +T+  +ISG     +   A+  + EM+ + +     TF  +LS 
Sbjct: 391 ITKAIQVFQELPGRNSLTWTAIISGLALHGNAHGAIAYFSEMIDNSVMPDEVTFLGLLSA 450

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP-ERNL 176
           C + G   EG +   + +S  F L+  +   S +VDL  R G    A +L   +P E + 
Sbjct: 451 CCHGGLVEEGRKYFSQ-MSSKFNLSPKLKHYSCMVDLLGRAGLLEEAEELIKSMPIEADA 509

Query: 177 ATWNLMLRA 185
             W  +  A
Sbjct: 510 VVWGALFFA 518


>gi|449507535|ref|XP_004163058.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g30700-like [Cucumis sativus]
          Length = 788

 Score =  278 bits (710), Expect = 9e-72,   Method: Compositional matrix adjust.
 Identities = 179/662 (27%), Positives = 330/662 (49%), Gaps = 29/662 (4%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           T+   A T + ++ + + L+L          ++ S  +    F   G +   ++LF+++ 
Sbjct: 19  TLLNNATTLSQLLQIQAQLILHGI-----HYDLSSITKLTHKFFDLGAVAHVRQLFNKVS 73

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESASTFSSVLSVCSNAGFYTEGI 130
             D+  +N+LI G      PK +++LY  +     ++    T++  +S  S       G+
Sbjct: 74  KPDLFLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAASRLEDERVGV 133

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            +H   +  G   NL++GS +VDLY +   +  A  +FD +PER+   WN M+  F   S
Sbjct: 134 LLHAHSIVDGVASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNS 193

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS------IGM---LLDEGKQLHSHVIKLG 241
             ++ +R++  M   G+  +  +   ++   +      +GM    L   K LHS      
Sbjct: 194 YFEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGLHS------ 247

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
               +++V   L+  YS CG   + +  FD I   D+IS+N+++S Y        A+ LF
Sbjct: 248 ----DVYVLTGLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLF 303

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             +    +R +  + V  +       ++   + I     K+G       V +ALT +Y +
Sbjct: 304 RELLASGQRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQP-SVSTALTTVYCR 362

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
            N ++ +  +F+ +P +SL   N++++    +G    A+ +F  M+ + +  + VT+++ 
Sbjct: 363 LNEVQFARQLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSI 421

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A +   + ++G  + +H        ESN+ VS +L+D Y++CG I  + Q+F+ +   
Sbjct: 422 LSACAQLGALSIG--KWVHGLIKSERLESNVYVSTALVDMYAKCGSIVEARQLFDLMVDK 479

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           NVV + +++ GY  +G G+EAL +   M+Q G+ P  VTFL +L  C+HSG+V EG  +F
Sbjct: 480 NVVTWNAMITGYGLHGHGKEALKLFYEMLQSGIPPTGVTFLSILYACSHSGLVSEGNEIF 539

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +SM + YG     +HY+CM+D+LGRAG L  A E +++ P      +W +LL +C +H N
Sbjct: 540 HSMANNYGFQPMSEHYACMVDILGRAGQLTNALEFIERMPLEPGPAVWGALLGACMIHKN 599

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             +    +  L +L+P +   Y  +SN YS    F  +  +R+    RKL +  G +LIE
Sbjct: 600 TEMANVASKRLFQLDPENVGYYVLLSNIYSTDRNFPKAASVRQVVKKRKLAKTPGCTLIE 659

Query: 662 VN 663
           ++
Sbjct: 660 ID 661



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 113/503 (22%), Positives = 233/503 (46%), Gaps = 17/503 (3%)

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L++ +NA   ++ +QI  +++  G   +L   + L   +  +G       LF+++ + +L
Sbjct: 18  LTLLNNATTLSQLLQIQAQLILHGIHYDLSSITKLTHKFFDLGAVAHVRQLFNKVSKPDL 77

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQL 233
             +N+++R F +   P   + +Y  + K   + P+  ++ + +   S   L DE  G  L
Sbjct: 78  FLFNVLIRGFSDNGLPKSSIFLYTHLRKXTNLRPDNFTYAFAISAAS--RLEDERVGVLL 135

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+H I  G V  N+FV +A+VD Y        A+K FD +P  D + WN+++S ++    
Sbjct: 136 HAHSIVDG-VASNLFVGSAIVDLYFKFTRAELARKVFDVMPERDTVLWNTMISGFSRNSY 194

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             D++ +F  M          +    L   +       G  I    +K G  H  V+V +
Sbjct: 195 FEDSIRVFVDMLDVGLSFDSTTLATVLTAVAELQEYRLGMGIQCLASKKGL-HSDVYVLT 253

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
            L  +Y KC        +F+      L   N++++    +   + AV +F  ++  G   
Sbjct: 254 GLISLYSKCGKSCKGRILFDQIDQPDLISYNAMISGYTFNHETESAVTLFRELLASG--- 310

Query: 414 DEVTLSTTLKALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
             V  ST +  + V    N L   RL+   ++K G     +VS +L   Y R   ++ + 
Sbjct: 311 QRVNSSTLVGLIPVYLPFNHLQLSRLIQNLSLKIGIILQPSVSTALTTVYCRLNEVQFAR 370

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           Q+F++ P  ++  + ++++GY++NG+   A+ + + M+ + L P+ VT   +L+ C   G
Sbjct: 371 QLFDESPEKSLASWNAMISGYTQNGLTDRAISLFQEMMPQ-LSPNPVTVTSILSACAQLG 429

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +  G+ V   +KS   ++++    + ++DM  + G + +A +L        + + W+++
Sbjct: 430 ALSIGKWVHGLIKS-ERLESNVYVSTALVDMYAKCGSIVEARQLFDLMV-DKNVVTWNAM 487

Query: 593 LRSCRVHGNEIIGRRVANILMEL 615
           +    +HG+   G+    +  E+
Sbjct: 488 ITGYGLHGH---GKEALKLFYEM 507


>gi|5262217|emb|CAB45843.1| putative protein [Arabidopsis thaliana]
 gi|7268873|emb|CAB79077.1| putative protein [Arabidopsis thaliana]
          Length = 740

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 180/628 (28%), Positives = 312/628 (49%), Gaps = 51/628 (8%)

Query: 43  NIYSSNRTIDDFVKSGHL-NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           NI+  N  +  + K G + +   ++F+ +   + V+Y  +I G  +     +A+ ++  M
Sbjct: 138 NIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLM 197

Query: 102 VSHGIKESASTFSSVLSVC-------SNAGFYTE--GIQIHCRVLSLGFGLNLYIGSPLV 152
              G++  +   S++LS+        S +  Y    G QIHC  L LGFG +L++ + L+
Sbjct: 198 CEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLL 257

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           ++Y +      A  +F E+PE N+ +WN+M+  F +  R D+ +    +M+  G +PN +
Sbjct: 258 EIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEV 317

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  C                                  F S  G +   ++ F  
Sbjct: 318 TCISVLGAC----------------------------------FRS--GDVETGRRIFSS 341

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           IP   V +WN+++S Y++Y+   +A+  F +MQ    +P   +    L+  +R   +  G
Sbjct: 342 IPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGG 401

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLL 391
           KQIHG V +      S H+ S L  +Y +C  +E S  +F+       + C NS+++   
Sbjct: 402 KQIHGVVIRTEISKNS-HIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFR 460

Query: 392 HSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           H+     A+ +F  M    +   +E + +T L + S   S   G  R  H   +KSG+ S
Sbjct: 461 HNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHG--RQFHGLVVKSGYVS 518

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           +  V  +L D Y +CG I+ + Q F+ +   N V +  +++GY  NG G EA+ +   MI
Sbjct: 519 DSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMI 578

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  PD +TF+ VL  C+HSG+V+ G  + +SM+ ++GI+ +  HY C++D LGRAG L
Sbjct: 579 SSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRL 638

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           + AE+L + TP     ++W  LL SCRVHG+  + RRVA  LM L+P   A Y  +SN Y
Sbjct: 639 EDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTY 698

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHS 658
           S + +++ S  ++      ++ +  G S
Sbjct: 699 SSLRQWDDSAALQGLMNKNRVHKTPGQS 726



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 129/547 (23%), Positives = 250/547 (45%), Gaps = 52/547 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++YS N  +    K G L  A ++FD MP RD+V++N +IS   +    ++AL +Y  MV
Sbjct: 37  DVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMV 96

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G   S  T +SVLS CS       G++ H   +  G   N+++G+ L+ +Y + G  V
Sbjct: 97  CDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIV 156

Query: 163 R-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE------PNGLSFC 215
              + +F+ L + N  ++  ++      ++  E ++M+  M  +GV+       N LS  
Sbjct: 157 DYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSIS 216

Query: 216 YMVRGC-SIGMLL--DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
               GC S+  +   + GKQ+H   ++LG+   ++ + N+L++ Y+    +  A+  F  
Sbjct: 217 APREGCDSLSEIYGNELGKQIHCLALRLGF-GGDLHLNNSLLEIYAKNKDMNGAELIFAE 275

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +P  +V+SWN ++  +        ++E   RM+    +P+  + +  L    R+G+V  G
Sbjct: 276 MPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETG 335

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           ++I                                    F S P  S+   N++++   +
Sbjct: 336 RRI------------------------------------FSSIPQPSVSAWNAMLSGYSN 359

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
             + ++A+  F  M  + +  D+ TLS  L   S +    L   + +H   I++    N 
Sbjct: 360 YEHYEEAISNFRQMQFQNLKPDKTTLSVILS--SCARLRFLEGGKQIHGVVIRTEISKNS 417

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEK-IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
            +   L+  YS C  +E+S  +F+  I   ++ C+ S+++G+  N +  +AL +   M Q
Sbjct: 418 HIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQ 477

Query: 512 RG-LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
              L P++ +F  VL+ C+    +  G+  F+ +    G  +D    + + DM  + G +
Sbjct: 478 TAVLCPNETSFATVLSSCSRLCSLLHGRQ-FHGLVVKSGYVSDSFVETALTDMYCKCGEI 536

Query: 571 DKAEELL 577
           D A +  
Sbjct: 537 DSARQFF 543



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 160/340 (47%), Gaps = 44/340 (12%)

Query: 246 NIFVANALVDFYSAC-------------------------------GSLIEAKKSFDFIP 274
           + ++ N L+D Y  C                               G L EA + FD +P
Sbjct: 6   DTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCKVGDLGEACEVFDGMP 65

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DV+SWN+++S+         AL ++ RM      PS  +    L+  S+  +  FG +
Sbjct: 66  ERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASVLSACSKVLDGVFGMR 125

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCN-VIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            HG   K G D  ++ V +AL  MY KC  +++  V VFES    +     +++  L   
Sbjct: 126 CHGVAVKTGLDK-NIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARE 184

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLK---------ALSVSASANLGSCRLLHCCAI 444
             + +AV+MF  M ++G+ +D V LS  L          +LS      LG  + +HC A+
Sbjct: 185 NKVLEAVQMFRLMCEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELG--KQIHCLAL 242

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           + GF  ++ ++ SL++ Y++   +  +  +F ++P  NVV +  ++ G+ +     ++++
Sbjct: 243 RLGFGGDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVE 302

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            L  M   G  P++VT + VL  C  SG V+ G+ +F+S+
Sbjct: 303 FLTRMRDSGFQPNEVTCISVLGACFRSGDVETGRRIFSSI 342


>gi|334186756|ref|NP_193809.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|223635629|sp|Q9SVH0.2|PP329_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g20770
 gi|332658959|gb|AEE84359.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 774

 Score =  277 bits (709), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 180/628 (28%), Positives = 312/628 (49%), Gaps = 51/628 (8%)

Query: 43  NIYSSNRTIDDFVKSGHL-NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           NI+  N  +  + K G + +   ++F+ +   + V+Y  +I G  +     +A+ ++  M
Sbjct: 172 NIFVGNALLSMYAKCGFIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLM 231

Query: 102 VSHGIKESASTFSSVLSVC-------SNAGFYTE--GIQIHCRVLSLGFGLNLYIGSPLV 152
              G++  +   S++LS+        S +  Y    G QIHC  L LGFG +L++ + L+
Sbjct: 232 CEKGVQVDSVCLSNILSISAPREGCDSLSEIYGNELGKQIHCLALRLGFGGDLHLNNSLL 291

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           ++Y +      A  +F E+PE N+ +WN+M+  F +  R D+ +    +M+  G +PN +
Sbjct: 292 EIYAKNKDMNGAELIFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEV 351

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  C                                  F S  G +   ++ F  
Sbjct: 352 TCISVLGAC----------------------------------FRS--GDVETGRRIFSS 375

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           IP   V +WN+++S Y++Y+   +A+  F +MQ    +P   +    L+  +R   +  G
Sbjct: 376 IPQPSVSAWNAMLSGYSNYEHYEEAISNFRQMQFQNLKPDKTTLSVILSSCARLRFLEGG 435

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLL 391
           KQIHG V +      S H+ S L  +Y +C  +E S  +F+       + C NS+++   
Sbjct: 436 KQIHGVVIRTEISKNS-HIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFR 494

Query: 392 HSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           H+     A+ +F  M    +   +E + +T L + S   S   G  R  H   +KSG+ S
Sbjct: 495 HNMLDTKALILFRRMHQTAVLCPNETSFATVLSSCSRLCSLLHG--RQFHGLVVKSGYVS 552

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           +  V  +L D Y +CG I+ + Q F+ +   N V +  +++GY  NG G EA+ +   MI
Sbjct: 553 DSFVETALTDMYCKCGEIDSARQFFDAVLRKNTVIWNEMIHGYGHNGRGDEAVGLYRKMI 612

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  PD +TF+ VL  C+HSG+V+ G  + +SM+ ++GI+ +  HY C++D LGRAG L
Sbjct: 613 SSGEKPDGITFVSVLTACSHSGLVETGLEILSSMQRIHGIEPELDHYICIVDCLGRAGRL 672

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           + AE+L + TP     ++W  LL SCRVHG+  + RRVA  LM L+P   A Y  +SN Y
Sbjct: 673 EDAEKLAEATPYKSSSVLWEILLSSCRVHGDVSLARRVAEKLMRLDPQSSAAYVLLSNTY 732

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHS 658
           S + +++ S  ++      ++ +  G S
Sbjct: 733 SSLRQWDDSAALQGLMNKNRVHKTPGQS 760



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 129/547 (23%), Positives = 249/547 (45%), Gaps = 52/547 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++YS N  +    K G L  A ++FD MP RD+V++N +IS   +    ++AL +Y  MV
Sbjct: 71  DVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMV 130

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G   S  T +SVLS CS       G++ H   +  G   N+++G+ L+ +Y + G  V
Sbjct: 131 CDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFIV 190

Query: 163 R-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE------PNGLSFC 215
              + +F+ L + N  ++  ++      ++  E ++M+  M  +GV+       N LS  
Sbjct: 191 DYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNILSIS 250

Query: 216 YMVRGC-SIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
               GC S+  +     GKQ+H   ++LG+   ++ + N+L++ Y+    +  A+  F  
Sbjct: 251 APREGCDSLSEIYGNELGKQIHCLALRLGF-GGDLHLNNSLLEIYAKNKDMNGAELIFAE 309

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +P  +V+SWN ++  +        ++E   RM+    +P+  + +  L    R+G+V  G
Sbjct: 310 MPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGDVETG 369

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           ++I                                    F S P  S+   N++++   +
Sbjct: 370 RRI------------------------------------FSSIPQPSVSAWNAMLSGYSN 393

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
             + ++A+  F  M  + +  D+ TLS  L   S +    L   + +H   I++    N 
Sbjct: 394 YEHYEEAISNFRQMQFQNLKPDKTTLSVILS--SCARLRFLEGGKQIHGVVIRTEISKNS 451

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEK-IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
            +   L+  YS C  +E+S  +F+  I   ++ C+ S+++G+  N +  +AL +   M Q
Sbjct: 452 HIVSGLIAVYSECEKMEISECIFDDCINELDIACWNSMISGFRHNMLDTKALILFRRMHQ 511

Query: 512 RG-LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
              L P++ +F  VL+ C+    +  G+  F+ +    G  +D    + + DM  + G +
Sbjct: 512 TAVLCPNETSFATVLSSCSRLCSLLHGRQ-FHGLVVKSGYVSDSFVETALTDMYCKCGEI 570

Query: 571 DKAEELL 577
           D A +  
Sbjct: 571 DSARQFF 577



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 174/371 (46%), Gaps = 50/371 (13%)

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC-------------- 260
           CY    C +      GK +H  ++++G +  + ++ N L+D Y  C              
Sbjct: 15  CYRDERCKL-----SGKVIHGFIVRMG-MKSDTYLCNRLLDLYIECGDGDYARKVFDEMS 68

Query: 261 -----------------GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
                            G L EA + FD +P  DV+SWN+++S+         AL ++ R
Sbjct: 69  VRDVYSWNAFLTFRCKVGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKR 128

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M      PS  +    L+  S+  +  FG + HG   K G D  ++ V +AL  MY KC 
Sbjct: 129 MVCDGFLPSRFTLASVLSACSKVLDGVFGMRCHGVAVKTGLDK-NIFVGNALLSMYAKCG 187

Query: 364 -VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
            +++  V VFES    +     +++  L     + +AV+MF  M ++G+ +D V LS  L
Sbjct: 188 FIVDYGVRVFESLSQPNEVSYTAVIGGLARENKVLEAVQMFRLMCEKGVQVDSVCLSNIL 247

Query: 423 K---------ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
                     +LS      LG  + +HC A++ GF  ++ ++ SL++ Y++   +  +  
Sbjct: 248 SISAPREGCDSLSEIYGNELG--KQIHCLALRLGFGGDLHLNNSLLEIYAKNKDMNGAEL 305

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F ++P  NVV +  ++ G+ +     ++++ L  M   G  P++VT + VL  C  SG 
Sbjct: 306 IFAEMPEVNVVSWNIMIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVTCISVLGACFRSGD 365

Query: 534 VKEGQLVFNSM 544
           V+ G+ +F+S+
Sbjct: 366 VETGRRIFSSI 376



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 109/455 (23%), Positives = 195/455 (42%), Gaps = 84/455 (18%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP-----------SVR-------------- 163
           G  IH  ++ +G   + Y+ + L+DLY+  G            SVR              
Sbjct: 25  GKVIHGFIVRMGMKSDTYLCNRLLDLYIECGDGDYARKVFDEMSVRDVYSWNAFLTFRCK 84

Query: 164 ------ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
                 A ++FD +PER++ +WN M+         ++ L +Y +M  +G  P+  +   +
Sbjct: 85  VGDLGEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALVVYKRMVCDGFLPSRFTLASV 144

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE-AKKSFDFIPVD 276
           +  CS  +    G + H   +K G +D NIFV NAL+  Y+ CG +++   + F+ +   
Sbjct: 145 LSACSKVLDGVFGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFIVDYGVRVFESLSQP 203

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS--FVEFLNF-ASRTG-----N 328
           + +S+ +++   A  + + +A+++F  M  C K   + S      L+  A R G      
Sbjct: 204 NEVSYTAVIGGLARENKVLEAVQMFRLM--CEKGVQVDSVCLSNILSISAPREGCDSLSE 261

Query: 329 VY---FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
           +Y    GKQIH    +LGF  G +H+ ++L ++Y K   +  +  +F   P  ++   N 
Sbjct: 262 IYGNELGKQIHCLALRLGFG-GDLHLNNSLLEIYAKNKDMNGAELIFAEMPEVNVVSWNI 320

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++           +VE    M D G   +EVT       +SV     LG+C         
Sbjct: 321 MIVGFGQEYRSDKSVEFLTRMRDSGFQPNEVT------CISV-----LGAC--------- 360

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
                             R G +E   ++F  IP P+V  + ++++GYS      EA+  
Sbjct: 361 -----------------FRSGDVETGRRIFSSIPQPSVSAWNAMLSGYSNYEHYEEAISN 403

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
              M  + L PDK T   +L+ C     ++ G+ +
Sbjct: 404 FRQMQFQNLKPDKTTLSVILSSCARLRFLEGGKQI 438


>gi|224141479|ref|XP_002324099.1| predicted protein [Populus trichocarpa]
 gi|222867101|gb|EEF04232.1| predicted protein [Populus trichocarpa]
          Length = 676

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 156/523 (29%), Positives = 275/523 (52%), Gaps = 44/523 (8%)

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N   ++  +   C+ +R  E L++ +++     +P+   +  +++ C    LL +GK++H
Sbjct: 38  NHKRFDEAIHILCQQNRLKEALQILHQID----KPSASVYSTLIQSCIKSRLLQQGKKVH 93

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
            H+   G+V   +F+ N L++ Y+ C SL++++K FD +P  D+ SWN ++S YA   L+
Sbjct: 94  QHIKLSGFVP-GLFILNRLLEMYAKCDSLMDSQKLFDEMPERDLCSWNILISGYAKMGLL 152

Query: 295 FDALELFFRMQ--------------LCRKRPSIRSFVEFLNFASRTGN------------ 328
            +A  LF +M               +   RP+    +E      R+ N            
Sbjct: 153 QEAKSLFDKMPERDNFSWTAMISGYVRHDRPN--EALELFRMMKRSDNSKSNKFTVSSAL 210

Query: 329 --------VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
                   +  GK+IHGY+ + G D   V V SAL+DMYGKC  IE +  +F+    R +
Sbjct: 211 AAAAAVPCLRIGKEIHGYIMRTGLDSDEV-VWSALSDMYGKCGSIEEARHIFDKMVDRDI 269

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
               +++      G  K+  ++F  ++  GI  +E T S  L A +   S  LG  + +H
Sbjct: 270 VTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVLNACANQTSEELG--KKVH 327

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
               + GF+     + +L+  YS+CG++  + +VF++ P P++  +TS++ GY++NG   
Sbjct: 328 GYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKETPQPDLFSWTSLIAGYAQNGQPD 387

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
           EA+   E++++ G  PD +TF+ VL+ C H+G+V +G   F+S+K  YG+     HY+C+
Sbjct: 388 EAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHSIKEQYGLTHTADHYACI 447

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620
           ID+L R+G  D+AE ++ +     D  +W+SLL  CR+HGN  + +R A  L E+EP + 
Sbjct: 448 IDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCRIHGNLKLAQRAAEALFEIEPENP 507

Query: 621 AVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           A Y  ++N Y+  G +    +IR+T   R + +  G S I + 
Sbjct: 508 ATYVTLANIYATAGMWSEVAKIRKTMDDRGVVKKPGLSWIAIK 550



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 105/438 (23%), Positives = 198/438 (45%), Gaps = 36/438 (8%)

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K SAS +S+++  C  +    +G ++H  +   GF   L+I + L+++Y +    + +  
Sbjct: 67  KPSASVYSTLIQSCIKSRLLQQGKKVHQHIKLSGFVPGLFILNRLLEMYAKCDSLMDSQK 126

Query: 167 LFDELPERNLATWNLMLRAFCEL-------------------------------SRPDEV 195
           LFDE+PER+L +WN+++  + ++                                RP+E 
Sbjct: 127 LFDEMPERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEA 186

Query: 196 LRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
           L ++  MK ++  + N  +    +   +    L  GK++H ++++ G +D +  V +AL 
Sbjct: 187 LELFRMMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTG-LDSDEVVWSALS 245

Query: 255 DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
           D Y  CGS+ EA+  FD +   D+++W +++  Y       +  +LF  +     RP+  
Sbjct: 246 DMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEF 305

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           +F   LN  +   +   GK++HGY+T++GFD  S    SAL  MY KC  + S+  VF+ 
Sbjct: 306 TFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSF-AASALVHMYSKCGNMVSAERVFKE 364

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
            P   L    SL+     +G   +A+  F  +V  G   D +T    L A + +   + G
Sbjct: 365 TPQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKG 424

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGY 493
                H    + G          ++D  +R G  + +  +  K+   P+   + S++ G 
Sbjct: 425 -LDYFHSIKEQYGLTHTADHYACIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGC 483

Query: 494 SRNGMGREALDMLEVMIQ 511
             +G  + A    E + +
Sbjct: 484 RIHGNLKLAQRAAEALFE 501



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 154/313 (49%), Gaps = 3/313 (0%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ ++ S N  I  + K G L  AK LFD+MP RD  ++  +ISG  +   P +AL L+ 
Sbjct: 132 PERDLCSWNILISGYAKMGLLQEAKSLFDKMPERDNFSWTAMISGYVRHDRPNEALELFR 191

Query: 100 EMV-SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            M  S   K +  T SS L+  +       G +IH  ++  G   +  + S L D+Y + 
Sbjct: 192 MMKRSDNSKSNKFTVSSALAAAAAVPCLRIGKEIHGYIMRTGLDSDEVVWSALSDMYGKC 251

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  +FD++ +R++ TW  M+  + +  R  E   ++  +   G+ PN  +F  ++
Sbjct: 252 GSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEFTFSGVL 311

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+     + GK++H ++ ++G+ D   F A+ALV  YS CG+++ A++ F   P  D+
Sbjct: 312 NACANQTSEELGKKVHGYMTRVGF-DPFSFAASALVHMYSKCGNMVSAERVFKETPQPDL 370

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG-KQIHG 337
            SW S+++ YA      +A+  F  +     +P   +FV  L+  +  G V  G    H 
Sbjct: 371 FSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGLDYFHS 430

Query: 338 YVTKLGFDHGSVH 350
              + G  H + H
Sbjct: 431 IKEQYGLTHTADH 443



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 125/259 (48%), Gaps = 6/259 (2%)

Query: 52  DDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           D + K G +  A+ +FD+M  RD+VT+  +I    +    K+   L+ +++  GI+ +  
Sbjct: 246 DMYGKCGSIEEARHIFDKMVDRDIVTWTAMIDRYFQDGRRKEGFDLFADLLRSGIRPNEF 305

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TFS VL+ C+N      G ++H  +  +GF    +  S LV +Y + G  V A  +F E 
Sbjct: 306 TFSGVLNACANQTSEELGKKVHGYMTRVGFDPFSFAASALVHMYSKCGNMVSAERVFKET 365

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG- 230
           P+ +L +W  ++  + +  +PDE +R +  +   G +P+ ++F  ++  C+   L+D+G 
Sbjct: 366 PQPDLFSWTSLIAGYAQNGQPDEAIRYFELLVKSGTQPDHITFVGVLSACAHAGLVDKGL 425

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS--- 286
              HS   + G        A  ++D  +  G   EA+     + +  D   W S++    
Sbjct: 426 DYFHSIKEQYGLTHTADHYA-CIIDLLARSGQFDEAENIISKMSMKPDKFLWASLLGGCR 484

Query: 287 IYADYDLIFDALELFFRMQ 305
           I+ +  L   A E  F ++
Sbjct: 485 IHGNLKLAQRAAEALFEIE 503


>gi|356501823|ref|XP_003519723.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 727

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 178/665 (26%), Positives = 335/665 (50%), Gaps = 12/665 (1%)

Query: 7   LPRVRTITTL-----APTCTSIVPLSSSLLLDSYCQPN-PQLNIYSSNRTIDDFVKSGHL 60
           LP   T+T+       P       L + LL+  + QP  P  + ++S + ++ +V  G L
Sbjct: 25  LPIHFTVTSFHRLKSPPNLHEARTLHALLLVLGFFQPTCPHSSSFAS-QLVNVYVNFGSL 83

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A   F  +P + ++ +N ++ G     H  +A++ Y  M+ HG+     T+  VL  C
Sbjct: 84  QHAFLTFRALPHKPIIAWNAILRGLVAVGHFTKAIHFYHSMLQHGVTPDNYTYPLVLKAC 143

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           S+      G  +H   +      N+Y+   ++D++ + G    A  +F+E+P+R+LA+W 
Sbjct: 144 SSLHALQLGRWVH-ETMHGKTKANVYVQCAVIDMFAKCGSVEDARRMFEEMPDRDLASWT 202

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            ++          E L ++ KM++EG+ P+ +    ++  C     +  G  L    ++ 
Sbjct: 203 ALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPACGRLEAVKLGMALQVCAVRS 262

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G+ + +++V+NA++D Y  CG  +EA + F  +   DV+SW+++++ Y+   L  ++ +L
Sbjct: 263 GF-ESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWSTLIAGYSQNCLYQESYKL 321

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           +  M       +       L    +   +  GK++H +V K G     V V SAL  MY 
Sbjct: 322 YIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKEGL-MSDVVVGSALIVMYA 380

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
            C  I+ + ++FE    + +   NS++      G+ + A   F  +       + +T+ +
Sbjct: 381 NCGSIKEAESIFECTSDKDIMVWNSMIVGYNLVGDFESAFFTFRRIWGAEHRPNFITVVS 440

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L   +   +   G  + +H    KSG   N++V  SL+D YS+CG +EL  +VF+++  
Sbjct: 441 ILPICTQMGALRQG--KEIHGYVTKSGLGLNVSVGNSLIDMYSKCGFLELGEKVFKQMMV 498

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            NV  + ++++    +G G + L   E M + G  P+KVTF+ +L+ C+H+G++  G L+
Sbjct: 499 RNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVTFISLLSACSHAGLLDRGWLL 558

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +NSM + YGI+ + +HYSCM+D++GRAG LD A + + + P   D  ++ SLL +CR+H 
Sbjct: 559 YNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFITRMPMTPDANVFGSLLGACRLHN 618

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
              +   +A  +++L+  D   Y  +SN Y+    +E   ++R     + L +  G S I
Sbjct: 619 KVELTELLAERILQLKADDSGHYVLLSNLYASGKRWEDMSKVRSMIKDKGLEKKPGSSWI 678

Query: 661 EVNSC 665
           +V  C
Sbjct: 679 QVGHC 683



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 128/495 (25%), Positives = 240/495 (48%), Gaps = 12/495 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML   + P   T   +   C+S+  L     +        + N+Y     ID F K G +
Sbjct: 124 MLQHGVTPDNYTYPLVLKACSSLHALQLGRWVHETMHGKTKANVYVQCAVIDMFAKCGSV 183

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A+++F+EMP RD+ ++  LI G        +AL L+ +M S G+   +   +S+L  C
Sbjct: 184 EDARRMFEEMPDRDLASWTALICGTMWNGECLEALLLFRKMRSEGLMPDSVIVASILPAC 243

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
                   G+ +    +  GF  +LY+ + ++D+Y + G  + A  +F  +   ++ +W+
Sbjct: 244 GRLEAVKLGMALQVCAVRSGFESDLYVSNAVIDMYCKCGDPLEAHRVFSHMVYSDVVSWS 303

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            ++  + +     E  ++Y  M   G+  N +    ++       LL +GK++H+ V+K 
Sbjct: 304 TLIAGYSQNCLYQESYKLYIGMINVGLATNAIVATSVLPALGKLELLKQGKEMHNFVLKE 363

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G +  ++ V +AL+  Y+ CGS+ EA+  F+     D++ WNS++     Y+L+ D    
Sbjct: 364 GLMS-DVVVGSALIVMYANCGSIKEAESIFECTSDKDIMVWNSMI---VGYNLVGDFESA 419

Query: 301 FF---RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           FF   R+     RP+  + V  L   ++ G +  GK+IHGYVTK G    +V V ++L D
Sbjct: 420 FFTFRRIWGAEHRPNFITVVSILPICTQMGALRQGKEIHGYVTKSGLGL-NVSVGNSLID 478

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  +E    VF+    R++   N+++++    G  +  +  +  M +EG   ++VT
Sbjct: 479 MYSKCGFLELGEKVFKQMMVRNVTTYNTMISACGSHGQGEKGLAFYEQMKEEGNRPNKVT 538

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
             + L A S +   + G   LL+   I   G E N+     ++D   R G ++ +++   
Sbjct: 539 FISLLSACSHAGLLDRG--WLLYNSMINDYGIEPNMEHYSCMVDLIGRAGDLDGAYKFIT 596

Query: 477 KIP-SPNVVCFTSIM 490
           ++P +P+   F S++
Sbjct: 597 RMPMTPDANVFGSLL 611


>gi|225432742|ref|XP_002279134.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22690
           [Vitis vinifera]
          Length = 836

 Score =  277 bits (708), Expect = 1e-71,   Method: Compositional matrix adjust.
 Identities = 177/638 (27%), Positives = 322/638 (50%), Gaps = 38/638 (5%)

Query: 59  HLNSAKKLFDEMPARD--MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           +   A +LF E    D  +   N LI G       ++A+ LY  M+  G+  +  TF  V
Sbjct: 78  YARKAFELFKEDVRSDDALFMLNSLIRGYSSAGLGREAILLYVRMLVLGVTPNHYTFPFV 137

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           LS C+    + EGIQ+H  V+ +G   +++I + L+  Y   G       +F+ + ERN+
Sbjct: 138 LSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGHMDHGHKVFEGMSERNV 197

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +W  ++  +    RP E + ++ +M   G+ P+ ++   ++  C+    LD G+++ ++
Sbjct: 198 VSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISACAKLRDLDMGERVCAY 257

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           + +LG + +N  + NALVD Y  CG++  AK+ FD     +++ +N+I+S YA   L  +
Sbjct: 258 IGELG-LKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLYNTILSNYARQGLARE 316

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           AL +   M     RP   + +  ++ +++  ++++GK  HGYV + G + G   + + + 
Sbjct: 317 ALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIRNGLE-GWDSIGNVII 375

Query: 357 DMYGKCNV-------------------------------IESSVAVFESAPGRSLECCNS 385
           DMY KC                                 +ES+  VF   P R+    N+
Sbjct: 376 DMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNT 435

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++ L+     +DA+E+F  M  EGI  D VT+     A     +  L   + +H    K
Sbjct: 436 MISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGYLGAPELA--KWVHTYIEK 493

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           +G   ++ ++ +L+D ++RCG  + + QVF K+   +V  +T+ +   +  G G  A  +
Sbjct: 494 NGIPCDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGL 553

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              M+ +G+ PD V F+ VL  C+H G V++G  +F+ M+  +GI    +HY CM+D+LG
Sbjct: 554 FNQMLIQGVKPDVVLFVQVLTACSHGGQVEQGLHIFSLMED-HGISPQIEHYGCMVDLLG 612

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           RAG+L +A +L++  P   + ++W SLL +CRVH N  +    A  + EL P    V+  
Sbjct: 613 RAGLLREAFDLIKSMPMEPNDVVWGSLLAACRVHKNVEMATYAAERINELAPQRAGVHVL 672

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +SN Y+  G++    ++R     + + +  G S ++VN
Sbjct: 673 LSNIYASAGKWTDVARVRLNLREKGVRKVPGSSSVQVN 710



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 128/528 (24%), Positives = 224/528 (42%), Gaps = 47/528 (8%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T   +   CT I      + +  S  +   + +++  N  I  + + GH
Sbjct: 122 MLVLGVTPNHYTFPFVLSGCTKIAAFCEGIQVHGSVVKMGLEEDVFIQNCLIHFYAECGH 181

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++   K+F+ M  R++V++  LI G  +   PK+A+ L+ EMV  GI+ S+ T   V+S 
Sbjct: 182 MDHGHKVFEGMSERNVVSWTSLICGYARGDRPKEAVSLFFEMVEAGIRPSSVTMVCVISA 241

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+       G ++   +  LG  LN  + + LVD+YM+ G    A  LFDE  +RNL  +
Sbjct: 242 CAKLRDLDMGERVCAYIGELGLKLNKVMVNALVDMYMKCGAIDAAKRLFDECVDRNLVLY 301

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N +L  +       E L + ++M  +G  P+ ++    +   +  + L  GK  H +VI+
Sbjct: 302 NTILSNYARQGLAREALAILDEMLQQGPRPDRVTMLSAISASAQLVDLFYGKVCHGYVIR 361

Query: 240 ---LGWVDVNIFVANALVDFYSACGSLIEAKKSFDF------------------------ 272
               GW      + N ++D Y  CG    A + FD                         
Sbjct: 362 NGLEGWDS----IGNVIIDMYMKCGKPEMACRVFDLMSNKTVVSWNSLTAGFIRNGDVES 417

Query: 273 -------IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
                  IP  + + WN+++S      L  DA+ELF  MQ    +    + +   +    
Sbjct: 418 AWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQGEGIKADRVTMMGIASACGY 477

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G     K +H Y+ K G     + + +AL DM+ +C   +S++ VF     R +    +
Sbjct: 478 LGAPELAKWVHTYIEKNGIP-CDMRLNTALVDMFARCGDPQSAMQVFNKMTERDVSAWTA 536

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI- 444
            + ++   GN + A  +F  M+ +G+  D V     L A S       G    LH  ++ 
Sbjct: 537 AIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACSHGGQVEQG----LHIFSLM 592

Query: 445 -KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
              G    I     ++D   R G +  +  + + +P  PN V + S++
Sbjct: 593 EDHGISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVVWGSLL 640



 Score = 94.7 bits (234), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 61/246 (24%), Positives = 120/246 (48%), Gaps = 4/246 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            + S N     F+++G + SA ++F+++P R+ V +N +ISG  +    + A+ L+ EM 
Sbjct: 398 TVVSWNSLTAGFIRNGDVESAWEVFNQIPERNAVFWNTMISGLVQKSLFEDAIELFREMQ 457

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GIK    T   + S C   G       +H  +   G   ++ + + LVD++ R G   
Sbjct: 458 GEGIKADRVTMMGIASACGYLGAPELAKWVHTYIEKNGIPCDMRLNTALVDMFARCGDPQ 517

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+ +F+++ ER+++ W   +         +    ++N+M  +GV+P+ + F  ++  CS
Sbjct: 518 SAMQVFNKMTERDVSAWTAAIGTMAMEGNGEGATGLFNQMLIQGVKPDVVLFVQVLTACS 577

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVIS 280
            G  +++G  + S +   G +   I     +VD     G L EA      +P++  DV+ 
Sbjct: 578 HGGQVEQGLHIFSLMEDHG-ISPQIEHYGCMVDLLGRAGLLREAFDLIKSMPMEPNDVV- 635

Query: 281 WNSIVS 286
           W S+++
Sbjct: 636 WGSLLA 641


>gi|297798898|ref|XP_002867333.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297313169|gb|EFH43592.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 792

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 174/608 (28%), Positives = 314/608 (51%), Gaps = 11/608 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFSSV 116
           G +  A+ +F  +   D+  +N+L+ G      P  +L ++  +  S  +K ++ST++  
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLAVFAHLRKSTDLKPNSSTYAFA 125

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           +S  S       G  IH + +  G    L +GS +V +Y +      A  +FD +PE++ 
Sbjct: 126 ISAASGFRDDRAGCVIHGQAIVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
             WN M+  + +     E ++++  +  E     +  +   ++   +    L  G Q+HS
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS 245

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
              K G    + +V    +  YS CG +  A   F      D++++N+++  Y       
Sbjct: 246 LATKTGCYSHD-YVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETE 304

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-DHGSVHVQSA 354
            +L LF  + L   +    + V  +     +G++     IHGY  K  F  H SV   +A
Sbjct: 305 LSLSLFKELMLSGAKLKSSTLVSLVPV---SGHLMLIYAIHGYSLKSNFLSHTSV--STA 359

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           LT +Y K N IES+  +F+ +P +SL   N++++    +G  +DA+ +F  M +     +
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPN 419

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
            VT++  L A +   + +LG  + +H     + FES+I VS +L+  Y++CG I  + ++
Sbjct: 420 PVTITCILSACAQLGALSLG--KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F+ +P  N V + ++++GY  +G G+EAL +   M+  G+ P  VTFLCVL  C+H+G+V
Sbjct: 478 FDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLV 537

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           KEG  +FNSM   YG +   +HY+C++D+LGRAG L +A + ++  P      +W +LL 
Sbjct: 538 KEGDEIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRALQFIEAMPIQPGPSVWETLLG 597

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +CR+H +  + R V+  L EL+P +   +  +SN +S    +  +  +R+TA  RKL + 
Sbjct: 598 ACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKA 657

Query: 655 IGHSLIEV 662
            G++LIE+
Sbjct: 658 PGYTLIEI 665



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 112/492 (22%), Positives = 234/492 (47%), Gaps = 24/492 (4%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q H +++  GF  ++ + + L      +G    A D+F  +   ++  +N+++R F    
Sbjct: 38  QTHAQIVLHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 191 RPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDE-GKQLHSHVIKLGWVDVNIF 248
            P   L ++  + K+  ++PN  ++ + +   S G   D  G  +H   I  G  D  + 
Sbjct: 98  SPHSSLAVFAHLRKSTDLKPNSSTYAFAISAAS-GFRDDRAGCVIHGQAIVDG-CDSELL 155

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM--QL 306
           + + +V  Y     + +A+K FD +P  D I WN+++S Y   ++  +++++F  +  + 
Sbjct: 156 LGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINES 215

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG-FDHGSVHVQSALTDMYGKCNVI 365
           C  R    + ++ L   +    +  G QIH   TK G + H   +V +    +Y KC  I
Sbjct: 216 C-TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD--YVLTGFISLYSKCGKI 272

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           + +  +F       +   N+++     +G  + ++ +F  ++  G  L     S+TL +L
Sbjct: 273 KMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLK----SSTLVSL 328

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
            V  S +L     +H  ++KS F S+ +VS +L   YS+   IE + ++F++ P  ++  
Sbjct: 329 -VPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + ++++GY++NG+  +A+ +   M      P+ VT  C+L+ C   G +  G+ V + ++
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447

Query: 546 SVYGIDADRQHY--SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           S    D +   Y  + +I M  + G + +A  L    P   + + W++++    +HG+  
Sbjct: 448 ST---DFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNE-VTWNTMISGYGLHGH-- 501

Query: 604 IGRRVANILMEL 615
            G+    I  E+
Sbjct: 502 -GQEALTIFSEM 512



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 101/427 (23%), Positives = 195/427 (45%), Gaps = 7/427 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESAST 112
           + K   +  A+K+FD MP +D + +N +ISG  K     +++ ++ ++++    +   +T
Sbjct: 164 YFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTT 223

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
              +L   +       G+QIH      G   + Y+ +  + LY + G    A  LF E  
Sbjct: 224 LLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMASTLFREFR 283

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
             ++  +N M+  +      +  L ++ ++   G +    +   +V      ML+     
Sbjct: 284 RPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGAKLKSSTLVSLVPVSGHLMLI---YA 340

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H + +K  ++  +  V+ AL   YS    +  A+K FD  P   + SWN+++S Y    
Sbjct: 341 IHGYSLKSNFLS-HTSVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L  DA+ LF  MQ     P+  +    L+  ++ G +  GK +H  V    F+  S++V 
Sbjct: 400 LTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE-SSIYVS 458

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL  MY KC  I  +  +F+  P ++    N++++     G+ ++A+ +F  M++ GI 
Sbjct: 459 TALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQEALTIFSEMLNSGIA 518

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
              VT    L A S +     G   + +    + GFE ++     ++D   R GH++ + 
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGD-EIFNSMIHRYGFEPSVKHYACVVDILGRAGHLQRAL 577

Query: 473 QVFEKIP 479
           Q  E +P
Sbjct: 578 QFIEAMP 584



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 88/337 (26%), Positives = 167/337 (49%), Gaps = 10/337 (2%)

Query: 45  YSSNRTIDDFV----KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           YS +  +  F+    K G +  A  LF E    D+V YN +I G       + +L L+ E
Sbjct: 253 YSHDYVLTGFISLYSKCGKIKMASTLFREFRRPDIVAYNAMIHGYTSNGETELSLSLFKE 312

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           ++  G K  +ST  S++ V   +G       IH   L   F  +  + + L  +Y ++  
Sbjct: 313 LMLSGAKLKSSTLVSLVPV---SGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNE 369

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFDE PE++L +WN M+  + +    ++ + ++ +M+     PN ++   ++  
Sbjct: 370 IESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSA 429

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L  GK +H  +++    + +I+V+ AL+  Y+ CGS+ EA++ FDF+P  + ++
Sbjct: 430 CAQLGALSLGKWVHD-LVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVT 488

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI-HGYV 339
           WN+++S Y  +    +AL +F  M      P+  +F+  L   S  G V  G +I +  +
Sbjct: 489 WNTMISGYGLHGHGQEALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMI 548

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            + GF+  SV   + + D+ G+   ++ ++   E+ P
Sbjct: 549 HRYGFE-PSVKHYACVVDILGRAGHLQRALQFIEAMP 584



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 76/295 (25%), Positives = 142/295 (48%), Gaps = 9/295 (3%)

Query: 19  TCTSIVPLSSSLLL----DSYCQPNPQLNIYSSNRTIDD-FVKSGHLNSAKKLFDEMPAR 73
           T  S+VP+S  L+L      Y   +  L+  S +  +   + K   + SA+KLFDE P +
Sbjct: 324 TLVSLVPVSGHLMLIYAIHGYSLKSNFLSHTSVSTALTTVYSKLNEIESARKLFDESPEK 383

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
            + ++N +ISG  +    + A+ L+ EM +     +  T + +LS C+  G  + G  +H
Sbjct: 384 SLPSWNAMISGYTQNGLTEDAISLFREMQNSEFSPNPVTITCILSACAQLGALSLGKWVH 443

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
             V S  F  ++Y+ + L+ +Y + G    A  LFD +P++N  TWN M+  +       
Sbjct: 444 DLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDFMPKKNEVTWNTMISGYGLHGHGQ 503

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           E L ++++M   G+ P  ++F  ++  CS   L+ EG ++ + +I     + ++     +
Sbjct: 504 EALTIFSEMLNSGIAPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYACV 563

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVS---IYADYDLIFDALELFFRM 304
           VD     G L  A +  + +P+    S W +++    I+ D +L     E  F +
Sbjct: 564 VDILGRAGHLQRALQFIEAMPIQPGPSVWETLLGACRIHKDTNLARTVSEKLFEL 618


>gi|449492963|ref|XP_004159154.1| PREDICTED: uncharacterized protein LOC101226880 [Cucumis sativus]
          Length = 1725

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 163/511 (31%), Positives = 271/511 (53%), Gaps = 17/511 (3%)

Query: 164  ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
            A   +  + + N+ +WN ++          E LR ++ ++  G+ P   SF   ++ CS 
Sbjct: 1095 ATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSA 1154

Query: 224  GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
               L  G+  H      G+ + ++FV++AL+D YS CG L +A+  FD IP+ +V+SW S
Sbjct: 1155 LCDLVSGRMSHQQAFVFGF-ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTS 1213

Query: 284  IVSIYADYDLIFDALELFFRMQLCRKRPSIRS----------FVEFLNFASRTGNVYFGK 333
            +++ Y   +   +AL LF       +   +             V  L+  SR       +
Sbjct: 1214 MITGYVQNEQADNALLLF--KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITE 1271

Query: 334  QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
             +HG+V K GFD GS+ V + L D Y KC     S  VF+    +     NS++     S
Sbjct: 1272 GVHGFVVKKGFD-GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQS 1330

Query: 394  GNIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
            G   +A+E+F  MV   G+  + VTLS  L A + + +   G C  +H   IK   E N+
Sbjct: 1331 GLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKC--IHDQVIKMDLEYNV 1388

Query: 453  AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
             V  S++D Y +CG +E++ + F+++   NV  +T+++ GY  +G  +EALD+   M++ 
Sbjct: 1389 CVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRA 1448

Query: 513  GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
            G+ P+ +TF+ VLA C+H+G+V+EG   FN+MK  Y I+   +HY CM+D+ GRAG L++
Sbjct: 1449 GVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNE 1508

Query: 573  AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
            A  L+++     D ++W SLL +CR+H N  +G   A  L EL+P +   Y  +SN Y++
Sbjct: 1509 AYNLIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYAD 1568

Query: 633  IGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             G +    ++R     R+L +  G SL+E+ 
Sbjct: 1569 AGRWADVERMRMLMKNRQLVKPPGFSLVELK 1599



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 157/319 (49%), Gaps = 33/319 (10%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH +++  G   +  +   L+ LY   G    A+ LF ++      TWNL++RA     
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             ++ L +Y  M  +G+  +  +F ++++ C+  + +D GK +H  +IK G+   ++FV 
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSG-DVFVQ 163

Query: 251 NALVDFY-------------------------------SACGSLIEAKKSFDFIPVDDVI 279
           N L+DFY                                +CG L EA++ FD IP  +V+
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW ++++ Y       +ALELF RMQ     P+  + V  +   +  G +  G+ IH Y 
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K   + G V++ +AL DMY KC  I+ ++ VFE+ P +SL   NS++TSL   G  ++A
Sbjct: 284 IKNCIEIG-VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342

Query: 400 VEMFGFMVDEGIGLDEVTL 418
           + +F  M    +  D +T 
Sbjct: 343 LNLFSEMERVNVKPDAITF 361



 Score =  144 bits (363), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 224/484 (46%), Gaps = 31/484 (6%)

Query: 61   NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
            N A   +  +   ++ ++N +I+   +     +AL  +  +   G+  + S+F   +  C
Sbjct: 1093 NLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSC 1152

Query: 121  SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
            S       G   H +    GF  +L++ S L+D+Y + G    A  LFDE+P RN+ +W 
Sbjct: 1153 SALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWT 1212

Query: 181  LMLRAFCELSRPDEVLRMYNKMKAEGVEPNG--------------LSFCYMVRGCSIGML 226
             M+  + +  + D  L ++     E  E                 LS C  V G  I   
Sbjct: 1213 SMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGI--- 1269

Query: 227  LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
              EG  +H  V+K G+ D +I V N L+D Y+ CG  + +KK FD++   D ISWNS+++
Sbjct: 1270 -TEG--VHGFVVKKGF-DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIA 1325

Query: 287  IYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
            +YA   L  +ALE+F  M +    R +  +    L   +  G +  GK IH  V K+  +
Sbjct: 1326 VYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLE 1385

Query: 346  HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
            + +V V +++ DMY KC  +E +   F+    ++++   +++      G  K+A+++F  
Sbjct: 1386 Y-NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYK 1444

Query: 406  MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
            MV  G+  + +T  + L A S +     G     +    K   E  I     ++D + R 
Sbjct: 1445 MVRAGVKPNYITFVSVLAACSHAGLVEEG-WHWFNAMKHKYDIEPGIEHYGCMVDLFGRA 1503

Query: 466  GHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR--GLIPDKVTFL 522
            G +  ++ + +++   P+ V + S++ G  R     + +D+ E+  Q+   L PD   + 
Sbjct: 1504 GCLNEAYNLIKRMKMKPDFVVWGSLL-GACRI---HKNVDLGEIAAQKLFELDPDNCGYY 1559

Query: 523  CVLA 526
             +L+
Sbjct: 1560 VLLS 1563



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 179/379 (47%), Gaps = 45/379 (11%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H+ +I+ G +  +  +   L+  YS  G +  A   F  I      +WN I+     
Sbjct: 44  RQIHAKIIRSG-LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTI 102

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFL-----NFASRTGNVYFGKQIHGYVTKLGFD 345
             L   AL L+  M +C+   + +    F+     NF S    +  GK +HG + K GF 
Sbjct: 103 NGLSEQALMLYKNM-VCQGIAADKFTFPFVIKACTNFLS----IDLGKVVHGSLIKYGFS 157

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA------ 399
            G V VQ+ L D Y KC     ++ VFE    R++    ++++ L+  G++++A      
Sbjct: 158 -GDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDE 216

Query: 400 -------------------------VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
                                    +E+F  M  E I  +E T+ + +KA +      LG
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS 494
             R +H  AIK+  E  + +  +L+D YS+CG I+ + +VFE +P  ++  + S++    
Sbjct: 277 --RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLG 334

Query: 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
            +G+G+EAL++   M +  + PD +TF+ VL  C H   VKEG   F  M   YGI    
Sbjct: 335 VHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIP 394

Query: 555 QHYSCMIDMLGRAGILDKA 573
           +HY CM ++  R+  LD+A
Sbjct: 395 EHYECMTELYARSNNLDEA 413



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 173/344 (50%), Gaps = 24/344 (6%)

Query: 41   QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            + +++ S+  ID + K G L  A+ LFDE+P R++V++  +I+G  +      AL L+ +
Sbjct: 1174 ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKD 1233

Query: 101  MVS--------HGIKESASTFSSVLSVCS--NAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
             +         + +   +    SVLS CS  +    TEG  +H  V+  GF  ++ +G+ 
Sbjct: 1234 FLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFDGSIGVGNT 1291

Query: 151  LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEP 209
            L+D Y + G  + +  +FD + E++  +WN M+  + +     E L +++ M +  GV  
Sbjct: 1292 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 1351

Query: 210  NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
            N ++   ++  C+    L  GK +H  VIK+  ++ N+ V  +++D Y  CG +  AKK+
Sbjct: 1352 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMD-LEYNVCVGTSIIDMYCKCGRVEMAKKT 1410

Query: 270  FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
            FD +   +V SW ++V+ Y  +    +AL++F++M     +P+  +FV  L   S  G V
Sbjct: 1411 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLV 1470

Query: 330  -----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
                 +F    H Y  + G +H        + D++G+   +  +
Sbjct: 1471 EEGWHWFNAMKHKYDIEPGIEH-----YGCMVDLFGRAGCLNEA 1509



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 166/356 (46%), Gaps = 38/356 (10%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           + + I  +   G +  A  LF ++      T+NL+I         +QAL LY  MV  GI
Sbjct: 62  TRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGI 121

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                TF  V+  C+N      G  +H  ++  GF  ++++ + L+D Y + G +  AL 
Sbjct: 122 AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALK 181

Query: 167 -------------------------------LFDELPERNLATWNLMLRAFCELSRPDEV 195
                                          +FDE+P +N+ +W  M+  +    +P+E 
Sbjct: 182 VFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEA 241

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L ++ +M+AE + PN  +   +++ C+   +L  G+ +H + IK   +++ +++  AL+D
Sbjct: 242 LELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK-NCIEIGVYLGTALID 300

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            YS CGS+ +A + F+ +P   + +WNS+++    + L  +AL LF  M+    +P   +
Sbjct: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ---SALTDMYGKCNVIESS 368
           F+  L       NV   K+   Y T++   +G   +      +T++Y + N ++ +
Sbjct: 361 FIGVLCACVHIKNV---KEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 9/264 (3%)

Query: 48   NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GI 106
            N  +D + K G    +KK+FD M  +D +++N +I+   +     +AL ++  MV H G+
Sbjct: 1290 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 1349

Query: 107  KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
            + +A T S+VL  C++AG    G  IH +V+ +    N+ +G+ ++D+Y + G    A  
Sbjct: 1350 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 1409

Query: 167  LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
             FD + E+N+ +W  M+  +    R  E L ++ KM   GV+PN ++F  ++  CS   L
Sbjct: 1410 TFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGL 1469

Query: 227  LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK---KSFDFIPVDDVISWNS 283
            ++EG    + +     ++  I     +VD +   G L EA    K     P  D + W S
Sbjct: 1470 VEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKP--DFVVWGS 1527

Query: 284  IVS---IYADYDLIFDALELFFRM 304
            ++    I+ + DL   A +  F +
Sbjct: 1528 LLGACRIHKNVDLGEIAAQKLFEL 1551



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 100/179 (55%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+ S    I   +  G L  A+++FDE+P++++V++  +I+G  + + P++AL L+  M 
Sbjct: 190 NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQ 249

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  I  +  T  S++  C+  G  T G  IH   +     + +Y+G+ L+D+Y + G   
Sbjct: 250 AENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A+++F+ +P ++L TWN M+ +        E L ++++M+   V+P+ ++F  ++  C
Sbjct: 310 DAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCAC 368



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 41/319 (12%)

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           +QIH  + + G  +  + +   L  +Y     I  ++ +F           N ++ +   
Sbjct: 44  RQIHAKIIRSGLSNDQL-LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTI 102

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           +G  + A+ ++  MV +GI  D+ T    +KA +   S +LG  +++H   IK GF  ++
Sbjct: 103 NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG--KVVHGSLIKYGFSGDV 160

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEK-------------------------------IPSP 481
            V  +L+D Y +CGH   + +VFEK                               IPS 
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK 220

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           NVV +T+++NGY RN    EAL++ + M    + P++ T + ++  C   G++  G+ + 
Sbjct: 221 NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIH 280

Query: 542 N-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + ++K+   I+      + +IDM  + G +  A E+ +  P       W+S++ S  VHG
Sbjct: 281 DYAIKNC--IEIGVYLGTALIDMYSKCGSIKDAIEVFETMP-RKSLPTWNSMITSLGVHG 337

Query: 601 NEIIGRRVANILMELEPVD 619
              +G+   N+  E+E V+
Sbjct: 338 ---LGQEALNLFSEMERVN 353



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 33   DSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK 92
            D   + + + N+      ID + K G +  AKK FD M  +++ ++  +++G G     K
Sbjct: 1377 DQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAK 1436

Query: 93   QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRV---LSLGFGLNLYIGS 149
            +AL ++ +MV  G+K +  TF SVL+ CS+AG   EG      +     +  G+  Y   
Sbjct: 1437 EALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY--G 1494

Query: 150  PLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRA 185
             +VDL+ R G    A +L   +  + +   W  +L A
Sbjct: 1495 CMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 1531



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPN-PQLNIYSSNRTIDDFVKSGH 59
           M +  + P   T+ +L   CT +  L+    +  Y   N  ++ +Y     ID + K G 
Sbjct: 248 MQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A ++F+ MP + + T+N +I+  G     ++AL L+ EM    +K  A TF  VL  
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367

Query: 120 CSNAGFYTEGIQIHCRV 136
           C +     EG     R+
Sbjct: 368 CVHIKNVKEGCAYFTRM 384


>gi|359483391|ref|XP_003632946.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g04370-like [Vitis vinifera]
          Length = 732

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 180/674 (26%), Positives = 342/674 (50%), Gaps = 28/674 (4%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSL------LLDSYCQPNPQLNIYSSNRTIDDF 54
           MLST   P   T  +L   CTS+   S  L      ++D Y   +     Y +   I+ +
Sbjct: 39  MLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSSDS-----YIATSLINFY 93

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            K GH  SA+K+FD M  R++V +  +I    +      A  +Y+ M   GI+ S+ T  
Sbjct: 94  SKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTML 153

Query: 115 SVLSVCSNAGFYTEGIQIHCR---VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
            +LS         E + + C    V+  GFG ++ + + ++++Y + G    A  LF+ +
Sbjct: 154 GLLSGV------LELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELM 207

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             R++ +WN ++  + +L    EVL++  +MK +G+EP+  +F  +V   ++   L  GK
Sbjct: 208 DARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGK 267

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +H H+++ G ++ +  +  +L+  Y  CG++  A + F+ +   DVISW +++S     
Sbjct: 268 MVHGHILRAG-LEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQN 326

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSV 349
           D    A+ +F RM   R  PS  +    L   +  G+   G  +HGY+   ++  D   +
Sbjct: 327 DCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLD---I 383

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
             Q++L  MY KC  +E S +VF+    R +   N++++    +G++  A+ +F  M   
Sbjct: 384 PSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKA 443

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
               D +T+ + L+A +   + + G  + +H    KS     I +  +L+D YS+CG + 
Sbjct: 444 RQRPDSITVVSLLQACASIGALHQG--KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLG 501

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            + + F+++P  ++V ++SI+ GY  +G G  AL M    +  G+ P+ V +L +L+ C+
Sbjct: 502 SAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+G+V +G   F+SM   +GI+   +H +C++D+L RAG +++A    ++        + 
Sbjct: 562 HNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVL 621

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
             LL +CR  GN  +G  VA  ++ L+P +   Y Q+++ Y+ +  ++   ++     + 
Sbjct: 622 GILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSL 681

Query: 650 KLTRDIGHSLIEVN 663
            L +  G S IE++
Sbjct: 682 HLKKLPGWSFIELH 695



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/551 (26%), Positives = 278/551 (50%), Gaps = 30/551 (5%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K   LN A K ++ +  R        +S  G F      L  Y  M+S      A TF S
Sbjct: 5   KPSFLNPATKSYNAIINR--------LSTAGAF---CDVLLTYSSMLSTDTPPDAHTFPS 53

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           ++  C++   ++ G+  H RV+  G+  + YI + L++ Y + G +  A  +FD + +RN
Sbjct: 54  LVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDRN 113

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           +  W  M+  +      D    MYN M+ +G++P+ ++   ++ G    + L   + LH+
Sbjct: 114 VVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGV---LELVHLQCLHA 170

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            VI+ G+   ++ +AN++++ Y  CG + +A+  F+ +   DVISWNS+VS YA    I 
Sbjct: 171 CVIQYGF-GSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNIR 229

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           + L+L  RM+     P  ++F   ++ A+    +  GK +HG++ + G +  S H++++L
Sbjct: 230 EVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDS-HIETSL 288

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
             MY KC  + S+  +FE    + +    ++++ L+ +     AV +F  M+   +    
Sbjct: 289 IGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPST 348

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
            T+++ L A +   S  LG+   +H   ++   + +I    SL+  Y++CGH+E S  VF
Sbjct: 349 ATIASVLAACAELGSFPLGTS--VHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSVF 406

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           +++   ++V + +I++G+++NG   +AL +   M +    PD +T + +L  C   G + 
Sbjct: 407 DRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGALH 466

Query: 536 EGQLVFNSM-KSVYG----IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +G+ + N + KS  G    ID      + ++DM  + G L  A++   + P   D + WS
Sbjct: 467 QGKWIHNFVTKSCLGPCILID------TALVDMYSKCGDLGSAQKCFDRMP-QQDLVSWS 519

Query: 591 SLLRSCRVHGN 601
           S++     HG 
Sbjct: 520 SIIAGYGSHGK 530


>gi|297843162|ref|XP_002889462.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335304|gb|EFH65721.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 608

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 165/573 (28%), Positives = 297/573 (51%), Gaps = 11/573 (1%)

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           A+ + +   S  I   ++ ++S+L  C     +  G+Q H  V+  G   +  +G+ L+ 
Sbjct: 44  AIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSGLETDRNVGNSLLS 103

Query: 154 LYMRMGPSVRALD-LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           LY ++GP +R    +FD +  ++  +W  M+  +       + L ++ +M + G++PN  
Sbjct: 104 LYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKF 163

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +    V+ C     +  G+  H  VI  G+ + N  +++ L   Y      ++A++ FD 
Sbjct: 164 TLSSAVKACFELGEVRLGRCFHGVVITHGF-EWNHVISSTLAYMYGVNKEPVDARRVFDE 222

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR-PSIRSFVEFLNFASRTGNVYF 331
           +P  DVI W +++S ++  DL  +AL LF+ M   +   P   +F   L        +  
Sbjct: 223 MPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQ 282

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           GK+IHG +   G    +V V+S+L DMYGK   +  +  VF   P +++   ++L+    
Sbjct: 283 GKEIHGKLITNGIG-SNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYC 341

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            +G  + A+EMF  M ++    D     T LKA +  A+  LG  + +H   ++ G   N
Sbjct: 342 QNGEHEKAIEMFREMEEK----DLYCFGTVLKACAGLAAVRLG--KEIHGQYVRRGCFGN 395

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + V  +L+D Y + G I+ + +V+ K+   N++ + ++++  ++NG G EA+     M++
Sbjct: 396 VIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVK 455

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
           +G+ PD ++F+ VL  C H+G+V+EG+  F  M   YGI    +HYSCMID+LGRAG+ +
Sbjct: 456 KGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHYSCMIDLLGRAGLFE 515

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGN-EIIGRRVANILMELEPVDFAVYSQVSNFY 630
           +AE LL +     D  +W  LL  C  + +   I  R+A  +MELEP     Y  +SN Y
Sbjct: 516 EAENLLDRAECRNDASLWGVLLGPCAANTDASSIAERIAKRMMELEPKYHMSYVLLSNMY 575

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             IG    +++IR+  + R + + +G S I+ +
Sbjct: 576 KAIGRHGDALKIRKLMVRRGVAKTVGQSWIDAH 608



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 119/437 (27%), Positives = 213/437 (48%), Gaps = 14/437 (3%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +   +++FD M  +D +++  ++SG    +   +AL ++ EMVS G++ +  T SS +  
Sbjct: 112 MRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEMVSFGLQPNKFTLSSAVKA 171

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C   G    G   H  V++ GF  N  I S L  +Y      V A  +FDE+PE ++  W
Sbjct: 172 CFELGEVRLGRCFHGVVITHGFEWNHVISSTLAYMYGVNKEPVDARRVFDEMPEPDVICW 231

Query: 180 NLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
             +L AF +    +E L ++  M + +G+ P+G +F  ++  C     L +GK++H  +I
Sbjct: 232 TAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLI 291

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
             G +  N+ V ++L+D Y   GS+ EA++ F+ +P  +++SW++++  Y        A+
Sbjct: 292 TNG-IGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKNIVSWSALLGGYCQNGEHEKAI 350

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           E+F  M+       +  F   L   +    V  GK+IHG   + G   G+V V+SAL D+
Sbjct: 351 EMFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGC-FGNVIVESALIDL 405

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           YGK   I+ +  V+     R++   N+++++L  +G  ++AV  F  MV +GI  D ++ 
Sbjct: 406 YGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISF 465

Query: 419 STTLKALSVSASANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
              L A   +     G      +     IK G E     SC ++D   R G  E +  + 
Sbjct: 466 IAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEH---YSC-MIDLLGRAGLFEEAENLL 521

Query: 476 EKIPSPNVVCFTSIMNG 492
           ++    N      ++ G
Sbjct: 522 DRAECRNDASLWGVLLG 538



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/424 (25%), Positives = 193/424 (45%), Gaps = 26/424 (6%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            C+L +  + +R+ N   +  +      +  +++ C        G Q H+HV+K G ++ 
Sbjct: 35  LCKLGQLTDAIRILNSTHSSEISAKSNLYASLLQTCRKVFSFIHGLQFHAHVVKSG-LET 93

Query: 246 NIFVANALVDFYSACG-SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           +  V N+L+  Y   G  + E ++ FD + V D ISW S++S Y        ALE+F  M
Sbjct: 94  DRNVGNSLLSLYFKLGPDMRETRRVFDGMFVKDAISWTSMMSGYVASKEHVKALEVFVEM 153

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                +P+  +    +      G V  G+  HG V   GF+   V + S L  MYG    
Sbjct: 154 VSFGLQPNKFTLSSAVKACFELGEVRLGRCFHGVVITHGFEWNHV-ISSTLAYMYGVNKE 212

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL--DEVTLSTTL 422
              +  VF+  P   + C  +++++   +   ++A+ +F + +  G GL  D  T  T L
Sbjct: 213 PVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLF-YAMHRGKGLVPDGSTFGTVL 271

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A        L   + +H   I +G  SN+ V  SL+D Y + G +  + QVF  +P  N
Sbjct: 272 TA--CGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREARQVFNGMPRKN 329

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V +++++ GY +NG   +A++M   M ++    D   F  VL  C     V+ G     
Sbjct: 330 IVSWSALLGGYCQNGEHEKAIEMFREMEEK----DLYCFGTVLKACAGLAAVRLG----- 380

Query: 543 SMKSVYGIDADRQHY------SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
             K ++G    R  +      S +ID+ G++G +D A  +  +     + + W+++L + 
Sbjct: 381 --KEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMS-VRNMITWNAMLSAL 437

Query: 597 RVHG 600
             +G
Sbjct: 438 AQNG 441



 Score = 95.5 bits (236), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/268 (25%), Positives = 128/268 (47%), Gaps = 7/268 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAK 64
           L+P   T  T+   C ++  L     +      N    N+   +  +D + KSG +  A+
Sbjct: 260 LVPDGSTFGTVLTACGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKSGSVREAR 319

Query: 65  KLFDEMPARDMVTYNLLISG-CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           ++F+ MP +++V+++ L+ G C    H K A+ ++ EM     ++    F +VL  C+  
Sbjct: 320 QVFNGMPRKNIVSWSALLGGYCQNGEHEK-AIEMFREME----EKDLYCFGTVLKACAGL 374

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                G +IH + +  G   N+ + S L+DLY + G    A  ++ ++  RN+ TWN ML
Sbjct: 375 AAVRLGKEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAML 434

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
            A  +  R +E +  +N M  +G++P+ +SF  ++  C    L++EG+   + + K   +
Sbjct: 435 SALAQNGRGEEAVSFFNDMVKKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGI 494

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFD 271
                  + ++D     G   EA+   D
Sbjct: 495 KPGTEHYSCMIDLLGRAGLFEEAENLLD 522



 Score = 63.9 bits (154), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 41/145 (28%), Positives = 75/145 (51%), Gaps = 6/145 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+   +  ID + KSG ++ A +++ +M  R+M+T+N ++S   +    ++A+  +++MV
Sbjct: 395 NVIVESALIDLYGKSGCIDYASRVYSKMSVRNMITWNAMLSALAQNGRGEEAVSFFNDMV 454

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEG---IQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
             GIK    +F +VL+ C + G   EG     +  +   +  G   Y  S ++DL  R G
Sbjct: 455 KKGIKPDYISFIAVLTACGHTGLVEEGRNYFALMAKSYGIKPGTEHY--SCMIDLLGRAG 512

Query: 160 PSVRALDLFDELPERNLAT-WNLML 183
               A +L D    RN A+ W ++L
Sbjct: 513 LFEEAENLLDRAECRNDASLWGVLL 537


>gi|224073070|ref|XP_002303960.1| predicted protein [Populus trichocarpa]
 gi|222841392|gb|EEE78939.1| predicted protein [Populus trichocarpa]
          Length = 704

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 158/587 (26%), Positives = 307/587 (52%), Gaps = 5/587 (0%)

Query: 81  LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140
           ++ G  K      AL  +  M    ++     F+ +L +C +      G +IH  V++ G
Sbjct: 1   MLKGYAKSSSLDSALSFFSRMKHDSVRPVVYNFTYLLKLCGDNSDLKRGKEIHGSVITSG 60

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
           F  NL+  + +V++Y +      A ++FD +PER+L  WN M+  + +       L +  
Sbjct: 61  FSWNLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVL 120

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M  EG  P+ ++   ++   +   LL  G  +H +V++ G+  + + V+ ALVD YS C
Sbjct: 121 RMSEEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESL-VNVSTALVDMYSKC 179

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
           GS+  A+  FD +    V+SWNS++  Y        A+ +F +M     +P+  + +  L
Sbjct: 180 GSVSIARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGAL 239

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
           +  +  G++  GK +H  V +L  D   V V ++L  MY KC  ++ +  +F++   ++L
Sbjct: 240 HACADLGDLERGKFVHKLVDQLKLD-SDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTL 298

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
              N+++     +G + +A+  F  M    I  D  T+ + + AL+  +       + +H
Sbjct: 299 VSWNAMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPR--QAKWIH 356

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
              I+   + N+ V  +L+D Y++CG I  + ++F+ + + +V+ + ++++GY  +G+G+
Sbjct: 357 GLVIRRFLDKNVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGK 416

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
            ++++ + M +  + P+ +TFLC L+ C+HSG+V+EG   F SMK  YGI+    HY  M
Sbjct: 417 TSVELFKEMKKGTIKPNDITFLCALSACSHSGLVEEGLCFFESMKKDYGIEPTMDHYGAM 476

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620
           +D+LGRAG L++A + +Q+ P      ++ ++L +C++H N  +G + A  + +L P D 
Sbjct: 477 VDLLGRAGRLNQAWDFIQKMPIKPGITVYGAMLGACKIHKNVDLGEKAAFEIFKLNPDDG 536

Query: 621 AVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
             +  ++N Y+    +    ++R       L +  G SL+E+ N  H
Sbjct: 537 GYHVLLANIYATASMWGKVAKVRTIMEKSGLQKTPGCSLVEIGNEVH 583



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 117/449 (26%), Positives = 207/449 (46%), Gaps = 4/449 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+++    ++ + K   +N A  +FD MP RD+V +N +ISG  +    K AL L   M 
Sbjct: 64  NLFAMTGVVNMYAKCRQINDAYNMFDRMPERDLVCWNTMISGYAQNGFAKVALMLVLRMS 123

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G +  + T  S+L   ++      G+ +H  VL  GF   + + + LVD+Y + G   
Sbjct: 124 EEGHRPDSITIVSILPAVADTRLLRIGMAVHGYVLRAGFESLVNVSTALVDMYSKCGSVS 183

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD +  R + +WN M+  + +    +  + ++ KM  EGV+P  ++    +  C+
Sbjct: 184 IARVIFDGMDHRTVVSWNSMIDGYVQSGDAEGAMLIFQKMLDEGVQPTNVTVMGALHACA 243

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ GK +H  V +L  +D ++ V N+L+  YS C  +  A   F  +    ++SWN
Sbjct: 244 DLGDLERGKFVHKLVDQLK-LDSDVSVMNSLISMYSKCKRVDIAADIFKNLRNKTLVSWN 302

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  YA    + +AL  F  MQ    +P   + V  +   +        K IHG V + 
Sbjct: 303 AMILGYAQNGCVNEALNAFCEMQSRNIKPDSFTMVSVIPALAELSIPRQAKWIHGLVIRR 362

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D  +V V +AL DMY KC  I ++  +F+    R +   N+++      G  K +VE+
Sbjct: 363 FLDK-NVFVMTALVDMYAKCGAIHTARKLFDMMNARHVITWNAMIDGYGTHGLGKTSVEL 421

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M    I  +++T    L A S S     G C          G E  +    +++D  
Sbjct: 422 FKEMKKGTIKPNDITFLCALSACSHSGLVEEGLC-FFESMKKDYGIEPTMDHYGAMVDLL 480

Query: 463 SRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
            R G +  +    +K+P  P +  + +++
Sbjct: 481 GRAGRLNQAWDFIQKMPIKPGITVYGAML 509


>gi|297742226|emb|CBI34375.3| unnamed protein product [Vitis vinifera]
          Length = 814

 Score =  277 bits (708), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 182/630 (28%), Positives = 328/630 (52%), Gaps = 24/630 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC---GKFRHPKQALYLY 98
           LN +  +  +D + K G ++SA+K F E    D V +  ++ G    G+F   ++   ++
Sbjct: 150 LNGFVVSGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGRE---VF 206

Query: 99  DEMVSHGIKESASTFS--SVLSVCSNAGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDL 154
            EM   G+    + FS  SVL   S+     EG Q+    + +G   G ++++ + L+++
Sbjct: 207 VEMRGLGLGLELNEFSLTSVLGALSDV---REGEQVFGLSVKMGLLCGCSIHLNNALMNM 263

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y R G    A+ +FDE+ E ++ +W   + A  +     E+ R+   + +  +E N    
Sbjct: 264 YSRCGSKSDAIKMFDEMTEPDVVSWTERIGAAYDAIEAFELFRL---VLSGNMEVNEYML 320

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++       LL  G+Q+     K G++ V   V NAL+  Y  CG ++ A+  FD + 
Sbjct: 321 INVLSAMREPKLLKSGRQIQGLCQKAGYLLV-ASVNNALIFMYGKCGEMVAARHIFDEML 379

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             D +SWNS+++ YA+  L+  AL++F +M+    +P+  +    L  A+ +       Q
Sbjct: 380 CGDSVSWNSLIAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQ 439

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           IH Y+ KLGF      + S L   YGKCN+I  S  V+      ++   N++  +L+H+G
Sbjct: 440 IHSYIVKLGFIVDDSML-SCLITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAG 498

Query: 395 NIKDAVEMF--GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
              DA+++F  G+ + + +  D +TLS  LKA    A  +L   R +H  A+KSG   + 
Sbjct: 499 CHADALKLFQTGWRLHQEV--DCITLSIVLKA--CGALTDLEYGRNIHSMALKSGMSQDN 554

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V  +++D Y +CG ++ + + F  +   N+V + +++ GY+++G   E  ++   M++ 
Sbjct: 555 FVESAVIDVYCKCGTVDEAAKTFMNVSKNNLVAWNAMVMGYAQHGCYHEVFELFNKMLEL 614

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD++T+L VL  C H+G+V E     +SM  ++G+    +HY+CMID+ GR G+L+ 
Sbjct: 615 GIQPDEITYLGVLNSCCHAGLVNEAHTYLSSMLELHGVVPCLEHYACMIDLFGRVGLLED 674

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A+  + Q P   D  +W  LL  C +HGN  +G   A  L+EL+P + + Y  +SN Y+ 
Sbjct: 675 AKRTIDQMPIMPDAQIWQILLSGCNIHGNVDLGEVAAKKLIELQPENDSAYVLLSNLYAS 734

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            G +    ++R     + + ++ G S I+V
Sbjct: 735 AGRWNAVGKLRRVMKKKIICKEPGSSWIQV 764



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 144/563 (25%), Positives = 256/563 (45%), Gaps = 20/563 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+ + S+  ++ F  SG    A++   + P  D V++N LISG  +FR P     L++ +
Sbjct: 53  LDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARFRQPGPVFDLFNGL 112

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G+     + SS++  C   G   +    H   L +G  LN ++ S L+D Y ++G  
Sbjct: 113 RRSGLSPDEFSLSSLVKGC---GVLEQNEVAHGVCLKMGL-LNGFVVSGLLDGYAKLGDV 168

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   F E    +   W  M+  F      ++   ++ +M+  G+   GL         
Sbjct: 169 DSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGL---GLELNEFSLTS 225

Query: 222 SIGMLLD--EGKQLHSHVIKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
            +G L D  EG+Q+    +K+G +   +I + NAL++ YS CGS  +A K FD +   DV
Sbjct: 226 VLGALSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAIKMFDEMTEPDV 285

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW     I A YD I +A ELF  +       +    +  L+       +  G+QI G 
Sbjct: 286 VSWTE--RIGAAYDAI-EAFELFRLVLSGNMEVNEYMLINVLSAMREPKLLKSGRQIQGL 342

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K G+      V +AL  MYGKC  + ++  +F+          NSL+     +G +K 
Sbjct: 343 CQKAGYLL-VASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSLIAGYAENGLMKQ 401

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL-LHCCAIKSGFESNIAVSCS 457
           A+++F  M D  +  ++ TL++ L+   V+A++N     + +H   +K GF  + ++   
Sbjct: 402 ALKVFSQMRDYLLQPNKYTLASILE---VAANSNFPEQAMQIHSYIVKLGFIVDDSMLSC 458

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+ AY +C  I  S +V+  I   NV+   ++       G   +AL + +   +     D
Sbjct: 459 LITAYGKCNMICESKRVYSDISQINVLHLNAMAATLVHAGCHADALKLFQTGWRLHQEVD 518

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            +T   VL  C     ++ G+ + +SM    G+  D    S +ID+  + G +D+A +  
Sbjct: 519 CITLSIVLKACGALTDLEYGRNI-HSMALKSGMSQDNFVESAVIDVYCKCGTVDEAAKTF 577

Query: 578 QQTPGGGDCMMWSSLLRSCRVHG 600
                  + + W++++     HG
Sbjct: 578 MNV-SKNNLVAWNAMVMGYAQHG 599



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/441 (22%), Positives = 202/441 (45%), Gaps = 13/441 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q +   L  GF L+ ++ S +V+ +   G   RA     + P  +  +WN ++  +    
Sbjct: 41  QSYALFLKSGFALDAFLSSFIVNRFAISGDFARARRFLLDTPYPDTVSWNSLISGYARFR 100

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           +P  V  ++N ++  G+ P+  S   +V+GC +   L++ +  H   +K+G   +N FV 
Sbjct: 101 QPGPVFDLFNGLRRSGLSPDEFSLSSLVKGCGV---LEQNEVAHGVCLKMGL--LNGFVV 155

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           + L+D Y+  G +  A+K F    + D + W ++V  +          E+F  M+     
Sbjct: 156 SGLLDGYAKLGDVDSAEKCFKEFYIADSVVWTAMVCGFVWNGEFEKGREVFVEMRGLGLG 215

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG-SVHVQSALTDMYGKCNVIESSV 369
             +  F    +      +V  G+Q+ G   K+G   G S+H+ +AL +MY +C     ++
Sbjct: 216 LELNEF-SLTSVLGALSDVREGEQVFGLSVKMGLLCGCSIHLNNALMNMYSRCGSKSDAI 274

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            +F+      +    S    +  + +  +A E+F  ++   + ++E  L   L A+    
Sbjct: 275 KMFDEMTEPDVV---SWTERIGAAYDAIEAFELFRLVLSGNMEVNEYMLINVLSAM--RE 329

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
              L S R +     K+G+    +V+ +L+  Y +CG +  +  +F+++   + V + S+
Sbjct: 330 PKLLKSGRQIQGLCQKAGYLLVASVNNALIFMYGKCGEMVAARHIFDEMLCGDSVSWNSL 389

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + GY+ NG+ ++AL +   M    L P+K T   +L    +S   ++   + + +  + G
Sbjct: 390 IAGYAENGLMKQALKVFSQMRDYLLQPNKYTLASILEVAANSNFPEQAMQIHSYIVKL-G 448

Query: 550 IDADRQHYSCMIDMLGRAGIL 570
              D    SC+I   G+  ++
Sbjct: 449 FIVDDSMLSCLITAYGKCNMI 469


>gi|357143522|ref|XP_003572950.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 874

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 178/620 (28%), Positives = 328/620 (52%), Gaps = 13/620 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K G +   + +F+ MP R++VT+  L++G  + R     + L+  M + G+  + 
Sbjct: 142 VDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNP 201

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF+SVLS  ++ G    G ++H + +  G    +++ + L+++Y + G    A  +F +
Sbjct: 202 FTFTSVLSAVASQGAVDLGRRVHAQSVKFGCRSTVFVCNSLINMYSKCGLVEEAKAVFRQ 261

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  R++ +WN ++          E L++++  +A   + +  ++  +++ C+    L   
Sbjct: 262 METRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANLKQLALA 321

Query: 231 KQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIY 288
           +QLHS V+K G+  D N+    A++D YS CG L +A   F  +P   +V+SW +++   
Sbjct: 322 RQLHSCVLKHGFHSDGNVM--TAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGC 379

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-YFGKQIHGYVTKLGFDHG 347
                I  A  LF RM+    +P+     EF      T ++     QIH  + K  + H 
Sbjct: 380 IQNADIPLAAALFSRMREDNVKPN-----EFTYSTVLTASIPILLPQIHAQIIKTNYQHA 434

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
              V +AL   Y K    E ++++F+    + +   +++++    +G+   A  +F  M 
Sbjct: 435 P-SVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNVFIKMS 493

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            +G+  +E T+S+ + A + S +A +   R  H  +IK  ++  I V  +L+  Y+R G 
Sbjct: 494 MQGMKPNEFTISSAIDACA-SPTAGIDQGRQFHAISIKYRYQDAICVGSALVTMYARKGS 552

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           I+ +  VFE+    ++V + S+++GY+++G  +EALD    M   G+  D  TFL V+ G
Sbjct: 553 IDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEALDTFRQMETVGIEMDGATFLAVIVG 612

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C H+G+VKEGQ  F+SM   + I    +HYSCM+D+  RAG LD+   L++  P     M
Sbjct: 613 CTHAGLVKEGQQYFDSMVMDHNISPTMEHYSCMVDLYSRAGKLDETMNLIEGMPFPAGAM 672

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           +W +LL +CRVH N  +G+  A  L+ LEP D A Y  +SN Y+  G ++   ++R+   
Sbjct: 673 VWRTLLGACRVHKNVELGKLAAQKLLLLEPDDSATYVLLSNIYAAAGRWKERDEVRKLMD 732

Query: 648 ARKLTRDIGHSLIEV-NSCH 666
           ++K+ ++ G S I++ N  H
Sbjct: 733 SKKVKKEAGCSWIQIKNKVH 752



 Score =  187 bits (475), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 143/576 (24%), Positives = 279/576 (48%), Gaps = 31/576 (5%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARD-----------MVTYNLLISGCGK 87
            P   + S+ R  DD   + +   A++  D MP+RD           +V Y     G G 
Sbjct: 24  KPLSALASAARLEDDCADTCNAPGARQALDGMPSRDAAAGSSSNPVAIVDYGRRGKGRG- 82

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG-LNLY 146
                +AL  + ++   G  + A+  S VL VC        G Q+HC  +  GF    + 
Sbjct: 83  -----EALDHFVDVHRCGRVQGAAV-SRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVG 136

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
           +G+ LVD+YM+ G       +F+ +P+RN+ TW  +L  + +     +V+ ++ +M+AEG
Sbjct: 137 VGTALVDMYMKCGGVEDGRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEG 196

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           V PN  +F  ++   +    +D G+++H+  +K G     +FV N+L++ YS CG + EA
Sbjct: 197 VWPNPFTFTSVLSAVASQGAVDLGRRVHAQSVKFG-CRSTVFVCNSLINMYSKCGLVEEA 255

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           K  F  +   D++SWN++++     +   +AL+LF   +    + S  ++   +   +  
Sbjct: 256 KAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKLCANL 315

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNS 385
             +   +Q+H  V K GF H   +V +A+ D Y KC  ++ +  +F   PG +++    +
Sbjct: 316 KQLALARQLHSCVLKHGF-HSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTA 374

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++   + + +I  A  +F  M ++ +  +E T ST L A   S    L     +H   IK
Sbjct: 375 MIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA---SIPILLPQ---IHAQIIK 428

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           + ++   +V  +L+ +YS+ G+ E +  +F+ I   +VV ++++++ YS+ G    A ++
Sbjct: 429 TNYQHAPSVGTALLASYSKLGNTEEALSIFKMIDHKDVVAWSAMLSCYSQAGDCDGATNV 488

Query: 506 LEVMIQRGLIPDKVTFLCVLAGC-NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
              M  +G+ P++ T    +  C + +  + +G+  F+++   Y         S ++ M 
Sbjct: 489 FIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQ-FHAISIKYRYQDAICVGSALVTMY 547

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            R G +D A  + ++     D + W+S++     HG
Sbjct: 548 ARKGSIDSARIVFERQT-DRDLVSWNSMISGYAQHG 582



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 113/441 (25%), Positives = 210/441 (47%), Gaps = 9/441 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++  N  I+ + K G +  AK +F +M  RDMV++N L++G     H  +AL L+ +  
Sbjct: 235 TVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNTLMAGLLLNEHQLEALQLFHDSR 294

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +   K S ST+S+V+ +C+N        Q+H  VL  GF  +  + + ++D Y + G   
Sbjct: 295 ASMAKLSQSTYSTVIKLCANLKQLALARQLHSCVLKHGFHSDGNVMTAIMDAYSKCGELD 354

Query: 163 RALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A ++F  +P  +N+ +W  M+    + +       ++++M+ + V+PN  ++  ++   
Sbjct: 355 DAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAALFSRMREDNVKPNEFTYSTVLTA- 413

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           SI +LL    Q+H+ +IK  +      V  AL+  YS  G+  EA   F  I   DV++W
Sbjct: 414 SIPILL---PQIHAQIIKTNYQHAP-SVGTALLASYSKLGNTEEALSIFKMIDHKDVVAW 469

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGYVT 340
           ++++S Y+       A  +F +M +   +P+  +    ++  AS T  +  G+Q H    
Sbjct: 470 SAMLSCYSQAGDCDGATNVFIKMSMQGMKPNEFTISSAIDACASPTAGIDQGRQFHAISI 529

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K  +   ++ V SAL  MY +   I+S+  VFE    R L   NS+++     G  K+A+
Sbjct: 530 KYRY-QDAICVGSALVTMYARKGSIDSARIVFERQTDRDLVSWNSMISGYAQHGYSKEAL 588

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           + F  M   GI +D  T    +   + +     G  +      +       +     ++D
Sbjct: 589 DTFRQMETVGIEMDGATFLAVIVGCTHAGLVKEGQ-QYFDSMVMDHNISPTMEHYSCMVD 647

Query: 461 AYSRCGHIELSHQVFEKIPSP 481
            YSR G ++ +  + E +P P
Sbjct: 648 LYSRAGKLDETMNLIEGMPFP 668



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 120/428 (28%), Positives = 203/428 (47%), Gaps = 29/428 (6%)

Query: 215 CYMVRGCSI-------GMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           C  V+G ++       G++ D   G+QLH   +K G+    + V  ALVD Y  CG + +
Sbjct: 94  CGRVQGAAVSRVLKVCGLIPDRVSGEQLHCLCVKCGFDRAEVGVGTALVDMYMKCGGVED 153

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
            +  F+ +P  +V++W S+++ Y       D + LFFRM+     P+  +F   L+  + 
Sbjct: 154 GRVVFEGMPKRNVVTWTSLLTGYVQGRACSDVMALFFRMRAEGVWPNPFTFTSVLSAVAS 213

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G V  G+++H    K G    +V V ++L +MY KC ++E + AVF     R +   N+
Sbjct: 214 QGAVDLGRRVHAQSVKFGC-RSTVFVCNSLINMYSKCGLVEEAKAVFRQMETRDMVSWNT 272

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           LM  LL + +  +A+++F         L + T ST +K    +    L   R LH C +K
Sbjct: 273 LMAGLLLNEHQLEALQLFHDSRASMAKLSQSTYSTVIKL--CANLKQLALARQLHSCVLK 330

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALD 504
            GF S+  V  ++MDAYS+CG ++ +  +F  +P S NVV +T+++ G  +N     A  
Sbjct: 331 HGFHSDGNVMTAIMDAYSKCGELDDAFNIFLLMPGSQNVVSWTAMIGGCIQNADIPLAAA 390

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY-SCMIDM 563
           +   M +  + P++ T+  VL     S  +   Q+    +K+ Y      QH  S    +
Sbjct: 391 LFSRMREDNVKPNEFTYSTVLTA---SIPILLPQIHAQIIKTNY------QHAPSVGTAL 441

Query: 564 LGRAGILDKAEELLQ--QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE---PV 618
           L     L   EE L   +     D + WS++L SC     +  G     I M ++   P 
Sbjct: 442 LASYSKLGNTEEALSIFKMIDHKDVVAWSAML-SCYSQAGDCDGATNVFIKMSMQGMKPN 500

Query: 619 DFAVYSQV 626
           +F + S +
Sbjct: 501 EFTISSAI 508


>gi|90657601|gb|ABD96900.1| hypothetical protein [Cleome spinosa]
          Length = 924

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 181/648 (27%), Positives = 324/648 (50%), Gaps = 33/648 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S +  +D + K   L+ +  +F  MP ++ ++++ +I+GC +       L ++ EM 
Sbjct: 215 DVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQ 274

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  S S ++SVL  C+       G Q+H   L   F  +  + +  +D+Y +     
Sbjct: 275 KVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGIVRTATLDMYAKCNNMQ 334

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD     NL ++N M+  + +       L ++ K+    +  + +S    +R C+
Sbjct: 335 DAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACA 394

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L EG QLH    K  +   NI VANA +D Y  C +L EA + FD +   D +SWN
Sbjct: 395 TVKGLSEGLQLHGLATKSNF-SRNICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWN 453

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +I++ +   +     L +   M      P   +F   L  A    ++  G +IH  + KL
Sbjct: 454 AIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLK-ACAGDSLNHGMEIHTTIVKL 512

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAV--------------------FESAPG---RS 379
           G    + ++ S+L DMY KC +I+ +  +                     E   G   R 
Sbjct: 513 GM-ASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRR 571

Query: 380 LE----CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           ++      N++++  +     +DA   F  M++ GI  D+ T ST L   +  AS  LG 
Sbjct: 572 VQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLG- 630

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + +H   IK   + ++ +  +L+D YS+CG++  S  +FEK P  + V + +++ GY+ 
Sbjct: 631 -KQIHAHVIKKELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAPIRDFVTWNAMICGYAH 689

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +GMG EA+ + E M+   ++P+  TF+ +L  C H G+V+ G   F+ MK  YG+D   +
Sbjct: 690 HGMGEEAIKLFESMVLMNIMPNHATFVSLLRACAHMGLVERGLDYFHMMKKEYGLDPRLE 749

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH-GNEIIGRRVANILME 614
           HYS M+D+LG++G ++KA EL+Q+ P   D ++W +LL +C+++  N       AN L+ 
Sbjct: 750 HYSNMVDILGKSGEVEKALELIQEMPFEADDVIWRTLLSACKINRNNVEAAEVAANALLR 809

Query: 615 LEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           L+P D + Y  +SN Y++ G ++ + ++R    + KL ++ G S +E+
Sbjct: 810 LDPQDSSTYILLSNIYADAGMWDKASELRTAMRSDKLKKEPGCSWVEI 857



 Score =  192 bits (487), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 152/611 (24%), Positives = 283/611 (46%), Gaps = 44/611 (7%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++ S N  I  +  S  +  A   F+ MP RD+V++N ++SG  +     +++ ++ 
Sbjct: 111 PLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSWNSMLSGFLQTGENLESVKVFI 170

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G++    +FS +L VCS    Y  G QIH   L +G+  ++  GS L+D+Y +  
Sbjct: 171 EMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALRMGYDTDVVSGSALLDMYAKCK 230

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               +  +F  +P++N  +W+ ++    + +  D  L+M+ +M+  GV  +   +  +++
Sbjct: 231 RLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLKMFKEMQKVGVGVSQSIYASVLK 290

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L  G QLH+H +K  +V   I V  A +D Y+ C ++ +A++ FD     ++ 
Sbjct: 291 SCATLPDLRLGTQLHAHALKSDFVKDGI-VRTATLDMYAKCNNMQDAQRLFDMSENLNLQ 349

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           S+N++++ Y+  D  F AL LF ++          S    L   +    +  G Q+HG  
Sbjct: 350 SYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLSGALRACATVKGLSEGLQLHGLA 409

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
           TK  F   ++ V +A  DMYGKC  ++ +  VF+    +     N+++ +   +      
Sbjct: 410 TKSNFSR-NICVANAFIDMYGKCEALDEACRVFDEMGRKDAVSWNAIIAAHEQNEERSKT 468

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +   M+  G+  DE T  + LKA    A  +L     +H   +K G  SN  +  SL+
Sbjct: 469 LNILVSMLRSGMEPDEYTFGSVLKA---CAGDSLNHGMEIHTTIVKLGMASNPYIGSSLV 525

Query: 460 DAYSRCGHIELSHQVFEK-----------------IPSPN----------VVCFTSIMNG 492
           D YS+CG I+ + ++  K                 I  P           +V + +I++G
Sbjct: 526 DMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEEPKGIQDRRVQEMIVSWNAIISG 585

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552
           Y       +A      M++ G+ PDK T+  VL  C +   +  G+ +       + I  
Sbjct: 586 YVMRKQSEDAQRFFNRMMEMGITPDKFTYSTVLDTCANLASIGLGKQI-----HAHVIKK 640

Query: 553 DRQH--YSC--MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH--GNEIIGR 606
           + Q+  Y C  ++DM  + G L  +  + ++ P   D + W++++     H  G E I  
Sbjct: 641 ELQYDVYICSTLVDMYSKCGNLHDSRLMFEKAP-IRDFVTWNAMICGYAHHGMGEEAIKL 699

Query: 607 RVANILMELEP 617
             + +LM + P
Sbjct: 700 FESMVLMNIMP 710



 Score =  185 bits (470), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 146/624 (23%), Positives = 285/624 (45%), Gaps = 57/624 (9%)

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           E PA  +  ++ +   C K R  +     +  M+  G + +    + +L +  N G    
Sbjct: 43  EKPATSVANFSFVFKECAKQRAHELGKQAHAHMIISGFRPTVFVSNCLLQLYINCG---- 98

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDL---------YMRMGPSVRALDLFDELPERNLATW 179
                    +LG+   L+ G PL D+         Y      VRA   F+ +P R++ +W
Sbjct: 99  ---------NLGYATKLFDGMPLRDVVSWNAMIFGYAASNDMVRASLCFEMMPTRDVVSW 149

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ML  F +     E ++++ +M   GVE +  SF  +++ CSI      G Q+H   ++
Sbjct: 150 NSMLSGFLQTGENLESVKVFIEMGRSGVEFDNKSFSVILKVCSILENYKLGTQIHGIALR 209

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           +G+ D ++   +AL+D Y+ C  L E+   F  +P  + ISW++I++     + +   L+
Sbjct: 210 MGY-DTDVVSGSALLDMYAKCKRLDESFTVFYAMPQKNWISWSAIIAGCVQNNFLDGGLK 268

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  MQ      S   +   L   +   ++  G Q+H +  K  F    + V++A  DMY
Sbjct: 269 MFKEMQKVGVGVSQSIYASVLKSCATLPDLRLGTQLHAHALKSDFVKDGI-VRTATLDMY 327

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KCN ++ +  +F+ +   +L+  N+++T      N   A+ +F  +    +G DE++LS
Sbjct: 328 AKCNNMQDAQRLFDMSENLNLQSYNAMITGYSQKDNGFRALLLFRKLSKSSLGFDEISLS 387

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L+A +     + G    LH  A KS F  NI V+ + +D Y +C  ++ + +VF+++ 
Sbjct: 388 GALRACATVKGLSEG--LQLHGLATKSNFSRNICVANAFIDMYGKCEALDEACRVFDEMG 445

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             + V + +I+  + +N    + L++L  M++ G+ PD+ TF  VL  C    +   G  
Sbjct: 446 RKDAVSWNAIIAAHEQNEERSKTLNILVSMLRSGMEPDEYTFGSVLKACAGDSL-NHGME 504

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE--------------------ELLQQ 579
           +  ++  + G+ ++    S ++DM  + G++D+AE                    E +++
Sbjct: 505 IHTTIVKL-GMASNPYIGSSLVDMYSKCGMIDEAEKIHNKIFIGIGDSNTYSEHPETIEE 563

Query: 580 TPGGGD------CMMWSSLLRSCRVHGNEIIGRRVANILMEL--EPVDFAVYSQVSNFYS 631
             G  D       + W++++    +       +R  N +ME+   P  F  YS V +  +
Sbjct: 564 PKGIQDRRVQEMIVSWNAIISGYVMRKQSEDAQRFFNRMMEMGITPDKF-TYSTVLDTCA 622

Query: 632 EIGEFEVSMQIRETALARKLTRDI 655
            +    +  QI    + ++L  D+
Sbjct: 623 NLASIGLGKQIHAHVIKKELQYDV 646



 Score = 79.3 bits (194), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 51/194 (26%), Positives = 98/194 (50%), Gaps = 4/194 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+   + P   T +T+  TC ++  +     + ++  +   Q ++Y  +  +D + K G+
Sbjct: 602 MMEMGITPDKFTYSTVLDTCANLASIGLGKQIHAHVIKKELQYDVYICSTLVDMYSKCGN 661

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ ++ +F++ P RD VT+N +I G       ++A+ L++ MV   I  + +TF S+L  
Sbjct: 662 LHDSRLMFEKAPIRDFVTWNAMICGYAHHGMGEEAIKLFESMVLMNIMPNHATFVSLLRA 721

Query: 120 CSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
           C++ G    G+   H      G    L   S +VD+  + G   +AL+L  E+P E +  
Sbjct: 722 CAHMGLVERGLDYFHMMKKEYGLDPRLEHYSNMVDILGKSGEVEKALELIQEMPFEADDV 781

Query: 178 TWNLMLRAFCELSR 191
            W  +L A C+++R
Sbjct: 782 IWRTLLSA-CKINR 794


>gi|50080253|gb|AAT69588.1| hypothetical protein [Oryza sativa Japonica Group]
 gi|222632650|gb|EEE64782.1| hypothetical protein OsJ_19638 [Oryza sativa Japonica Group]
          Length = 870

 Score =  276 bits (707), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 172/627 (27%), Positives = 316/627 (50%), Gaps = 9/627 (1%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P   +   N  +   V+ G +  A ++F +MP RD+ ++N+++ G GK    ++AL LY
Sbjct: 126 HPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLY 185

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M+  G++    TF  VL  C     +  G ++H  VL  GFG  + + + LV +Y + 
Sbjct: 186 YRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKC 245

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G  V A  +FD +   +  +WN M+    E    +  L ++  M    V+PN ++   + 
Sbjct: 246 GDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVT 305

Query: 219 RGCSIGMLLDEG--KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
              + GML + G  K++H   +K G+  +++   N+L+  Y++ G + +A K F  +   
Sbjct: 306 --VASGMLSEVGFAKEMHGFAVKRGFA-IDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK 362

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D +SW +++S Y        ALE++  M+L    P   +    L   +  G +  G ++H
Sbjct: 363 DAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLH 422

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
                 GF    V V +AL +MY K   I+ ++ VF+    + +   +S++     +   
Sbjct: 423 ELAQNKGFIRYVV-VANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRS 481

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            +A+  F +M+   +  + VT    L A   +A+  L S + +H   ++ G  S   V  
Sbjct: 482 FEALYYFRYMLGH-VKPNSVTFIAALSA--CAATGALRSGKEIHAYVLRCGIGSEGYVPN 538

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y +CG    +   F      +VV +  +++G+  +G+G  AL +   M++ G  P
Sbjct: 539 ALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHP 598

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D+VTF+ +L  C+ +GMV +G  +F+ M   + I  + +HY+CM+D+L R G L +A  L
Sbjct: 599 DEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNL 658

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           + + P   D  +W +LL  CR+H +  +G   A +++ELEP D A +  + + Y++ G++
Sbjct: 659 INRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKW 718

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
               ++R+T   + L +D G S +EV 
Sbjct: 719 AQVARVRKTMREKGLEQDNGCSWVEVK 745


>gi|302144099|emb|CBI23204.3| unnamed protein product [Vitis vinifera]
          Length = 907

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 180/674 (26%), Positives = 342/674 (50%), Gaps = 28/674 (4%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSL------LLDSYCQPNPQLNIYSSNRTIDDF 54
           MLST   P   T  +L   CTS+   S  L      ++D Y       + Y +   I+ +
Sbjct: 39  MLSTDTPPDAHTFPSLVKACTSLDLFSHGLSFHQRVIVDGYSS-----DSYIATSLINFY 93

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            K GH  SA+K+FD M  R++V +  +I    +      A  +Y+ M   GI+ S+ T  
Sbjct: 94  SKFGHNQSARKVFDTMDDRNVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTML 153

Query: 115 SVLSVCSNAGFYTEGIQIHCR---VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
            +LS         E + + C    V+  GFG ++ + + ++++Y + G    A  LF+ +
Sbjct: 154 GLLSGV------LELVHLQCLHACVIQYGFGSDVALANSMLNVYCKCGRVEDAQALFELM 207

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             R++ +WN ++  + +L    EVL++  +MK +G+EP+  +F  +V   ++   L  GK
Sbjct: 208 DARDVISWNSLVSGYAQLGNIREVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGK 267

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +H H+++ G ++ +  +  +L+  Y  CG++  A + F+ +   DVISW +++S     
Sbjct: 268 MVHGHILRAG-LEQDSHIETSLIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQN 326

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSV 349
           D    A+ +F RM   R  PS  +    L   +  G+   G  +HGY+   ++  D   +
Sbjct: 327 DCADMAVTVFRRMLKSRVMPSTATIASVLAACAELGSFPLGTSVHGYILRQRIKLD---I 383

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
             Q++L  MY KC  +E S +VF+    R +   N++++    +G++  A+ +F  M   
Sbjct: 384 PSQNSLVTMYAKCGHLEQSCSVFDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKA 443

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
               D +T+ + L+A +   + + G  + +H    KS     I +  +L+D YS+CG + 
Sbjct: 444 RQRPDSITVVSLLQACASIGALHQG--KWIHNFVTKSCLGPCILIDTALVDMYSKCGDLG 501

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            + + F+++P  ++V ++SI+ GY  +G G  AL M    +  G+ P+ V +L +L+ C+
Sbjct: 502 SAQKCFDRMPQQDLVSWSSIIAGYGSHGKGETALRMYSDFLHTGIQPNHVIYLSILSACS 561

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+G+V +G   F+SM   +GI+   +H +C++D+L RAG +++A    ++        + 
Sbjct: 562 HNGLVDQGLSFFHSMTKDFGIEPRLEHRACIVDLLSRAGRVEEAYSFYKRMFPKPSMDVL 621

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
             LL +CR  GN  +G  VA  ++ L+P +   Y Q+++ Y+ +  ++   ++     + 
Sbjct: 622 GILLDACRTTGNVELGDIVAREIVILKPANAGNYVQLAHSYASMKRWDGVGEVWTQMKSL 681

Query: 650 KLTRDIGHSLIEVN 663
            L +  G S IE++
Sbjct: 682 HLKKLPGWSFIELH 695



 Score =  221 bits (563), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 146/552 (26%), Positives = 278/552 (50%), Gaps = 30/552 (5%)

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            K   LN A K ++ +  R        +S  G F      L  Y  M+S      A TF 
Sbjct: 4   AKPSFLNPATKSYNAIINR--------LSTAGAF---CDVLLTYSSMLSTDTPPDAHTFP 52

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S++  C++   ++ G+  H RV+  G+  + YI + L++ Y + G +  A  +FD + +R
Sbjct: 53  SLVKACTSLDLFSHGLSFHQRVIVDGYSSDSYIATSLINFYSKFGHNQSARKVFDTMDDR 112

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N+  W  M+  +      D    MYN M+ +G++P+ ++   ++ G    + L   + LH
Sbjct: 113 NVVPWTTMIGCYTRAGEHDVAFSMYNIMRRQGIQPSSVTMLGLLSGV---LELVHLQCLH 169

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           + VI+ G+   ++ +AN++++ Y  CG + +A+  F+ +   DVISWNS+VS YA    I
Sbjct: 170 ACVIQYGF-GSDVALANSMLNVYCKCGRVEDAQALFELMDARDVISWNSLVSGYAQLGNI 228

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            + L+L  RM+     P  ++F   ++ A+    +  GK +HG++ + G +  S H++++
Sbjct: 229 REVLQLLIRMKTDGIEPDQQTFGSLVSAAAMQSKLGVGKMVHGHILRAGLEQDS-HIETS 287

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L  MY KC  + S+  +FE    + +    ++++ L+ +     AV +F  M+   +   
Sbjct: 288 LIGMYLKCGNVNSAFRIFEGMMHKDVISWTAMISGLVQNDCADMAVTVFRRMLKSRVMPS 347

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
             T+++ L A +   S  LG+   +H   ++   + +I    SL+  Y++CGH+E S  V
Sbjct: 348 TATIASVLAACAELGSFPLGTS--VHGYILRQRIKLDIPSQNSLVTMYAKCGHLEQSCSV 405

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F+++   ++V + +I++G+++NG   +AL +   M +    PD +T + +L  C   G +
Sbjct: 406 FDRMSRRDIVSWNAIVSGHAQNGHLCKALLLFNEMRKARQRPDSITVVSLLQACASIGAL 465

Query: 535 KEGQLVFNSM-KSVYG----IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            +G+ + N + KS  G    ID      + ++DM  + G L  A++   + P   D + W
Sbjct: 466 HQGKWIHNFVTKSCLGPCILID------TALVDMYSKCGDLGSAQKCFDRMP-QQDLVSW 518

Query: 590 SSLLRSCRVHGN 601
           SS++     HG 
Sbjct: 519 SSIIAGYGSHGK 530


>gi|359495864|ref|XP_002266254.2| PREDICTED: pentatricopeptide repeat-containing protein
           At5g65570-like [Vitis vinifera]
          Length = 751

 Score =  276 bits (706), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 162/555 (29%), Positives = 299/555 (53%), Gaps = 6/555 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           +S   +SS++  C      T+  +I    L  GF  +L  G+ L+D Y++ G  V A  +
Sbjct: 75  QSTKLYSSLIQQCIGIKSITDITKIQSHALKRGFHHSL--GNKLIDAYLKCGSVVYARKV 132

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P R++  WN M+ ++    R  E + +Y +M  +G+ P+  +F  + +  S   L+
Sbjct: 133 FDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGILPDEFTFSSVFKAFSDLGLV 192

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            EG++ H   + LG    N+FV +ALVD Y+  G + +A+   D +   DV+ + +++  
Sbjct: 193 HEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVG 252

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+ +    ++L++F  M       +  +    L       ++  G+ IHG + K G +  
Sbjct: 253 YSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLE-S 311

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V  Q++L  MY +C +++ S+ VF+     +     S++  L+ +G  + A+  F  M+
Sbjct: 312 AVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQML 371

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
              I  +  TLS+ L+A   S+ A L   + +H   +K G + +  V  +L+D Y +CG 
Sbjct: 372 RSSITPNSFTLSSVLRA--CSSLAMLEQGKQIHAIVMKFGLDIDKYVGAALIDFYGKCGS 429

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
            E++  VF  +   +VV   S++  Y++NG G EAL +   M   GL P+ VT+L VL+ 
Sbjct: 430 TEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSA 489

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           CN++G+++EG  +F+S ++   I+  + HY+CM+D+LGRAG L +AE L+ Q     D +
Sbjct: 490 CNNAGLLEEGCHIFSSARNSGNIELTKDHYACMVDLLGRAGRLKEAEMLINQV-NISDVV 548

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           +W +LL +CR+HG+  + +RV N +++L P D   +  +SN Y+  G +   ++++    
Sbjct: 549 IWRTLLSACRIHGDVEMAKRVMNRVIDLAPEDGGTHVLLSNLYASTGNWSKVIEMKSAMR 608

Query: 648 ARKLTRDIGHSLIEV 662
             +L ++   S ++V
Sbjct: 609 EMRLKKNPAMSWVDV 623



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 129/496 (26%), Positives = 225/496 (45%), Gaps = 39/496 (7%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N+ ID ++K G +  A+K+FDE+P R +V +N +I+   +    K+A+ +Y  MV  GI 
Sbjct: 114 NKLIDAYLKCGSVVYARKVFDEVPHRHIVAWNSMIASYIRNGRSKEAIDIYQRMVPDGIL 173

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALD 166
               TFSSV    S+ G   EG + H + + LG G+ N+++GS LVD+Y + G    A  
Sbjct: 174 PDEFTFSSVFKAFSDLGLVHEGQRAHGQSVVLGVGVSNVFVGSALVDMYAKFGKMRDARL 233

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           + D++  +++  +  ++  +       E L+++  M  +G+E N  +   ++  C     
Sbjct: 234 VSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMTKKGIEANEYTLSSVLVCCGNLED 293

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L  G+ +H  ++K G ++  +    +L+  Y  CG + ++ K F      + ++W S++ 
Sbjct: 294 LTSGRLIHGLIVKAG-LESAVASQTSLLTMYYRCGLVDDSLKVFKQFINPNQVTWTSVIV 352

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
                     AL  F +M      P+  +    L   S    +  GKQIH  V K G D 
Sbjct: 353 GLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGKQIHAIVMKFGLDI 412

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
              +V +AL D YGKC   E + +VF       +   NS++ S   +G   +A+++F  M
Sbjct: 413 DK-YVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNGFGHEALQLFSGM 471

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            D G+  + VT    L  LS   +A L                  +   C +  +    G
Sbjct: 472 KDTGLEPNNVTW---LGVLSACNNAGL------------------LEEGCHIFSSARNSG 510

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +IEL+   +         C   ++    R G  +EA    E++I +  I D V +  +L+
Sbjct: 511 NIELTKDHY--------ACMVDLL---GRAGRLKEA----EMLINQVNISDVVIWRTLLS 555

Query: 527 GCNHSGMVKEGQLVFN 542
            C   G V+  + V N
Sbjct: 556 ACRIHGDVEMAKRVMN 571



 Score =  129 bits (324), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 79/285 (27%), Positives = 143/285 (50%), Gaps = 1/285 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  +  +D + K G +  A+ + D++  +D+V +  LI G        ++L ++  M 
Sbjct: 211 NVFVGSALVDMYAKFGKMRDARLVSDQVVGKDVVLFTALIVGYSHHGEDGESLQVFRNMT 270

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI+ +  T SSVL  C N    T G  IH  ++  G    +   + L+ +Y R G   
Sbjct: 271 KKGIEANEYTLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVD 330

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +L +F +    N  TW  ++    +  R +  L  + +M    + PN  +   ++R CS
Sbjct: 331 DSLKVFKQFINPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACS 390

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              +L++GKQ+H+ V+K G +D++ +V  AL+DFY  CGS   A+  F+ +   DV+S N
Sbjct: 391 SLAMLEQGKQIHAIVMKFG-LDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVN 449

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
           S++  YA      +AL+LF  M+     P+  +++  L+  +  G
Sbjct: 450 SMIYSYAQNGFGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAG 494



 Score =  107 bits (267), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 69/286 (24%), Positives = 145/286 (50%), Gaps = 4/286 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T++++   C ++  L+S  L+     +   +  + S    +  + + G ++ + K+F + 
Sbjct: 280 TLSSVLVCCGNLEDLTSGRLIHGLIVKAGLESAVASQTSLLTMYYRCGLVDDSLKVFKQF 339

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
              + VT+  +I G  +    + AL  + +M+   I  ++ T SSVL  CS+     +G 
Sbjct: 340 INPNQVTWTSVIVGLVQNGREEIALLKFRQMLRSSITPNSFTLSSVLRACSSLAMLEQGK 399

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH  V+  G  ++ Y+G+ L+D Y + G +  A  +F+ L E ++ + N M+ ++ +  
Sbjct: 400 QIHAIVMKFGLDIDKYVGAALIDFYGKCGSTEIARSVFNGLLEVDVVSVNSMIYSYAQNG 459

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E L++++ MK  G+EPN +++  ++  C+   LL+EG  + S     G +++     
Sbjct: 460 FGHEALQLFSGMKDTGLEPNNVTWLGVLSACNNAGLLEEGCHIFSSARNSGNIELTKDHY 519

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS---IYADYDL 293
             +VD     G L EA+   + + + DV+ W +++S   I+ D ++
Sbjct: 520 ACMVDLLGRAGRLKEAEMLINQVNISDVVIWRTLLSACRIHGDVEM 565


>gi|356509887|ref|XP_003523674.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Glycine max]
          Length = 750

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 180/622 (28%), Positives = 318/622 (51%), Gaps = 16/622 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +SS   +  + + G +  A+K+FDE+P RD+V +  LI G      P++ L     +  H
Sbjct: 139 HSSASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHV--H 196

Query: 105 GI-----KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           G+     K +A T+      C N G  +EG  +H  V+    G+  +I S ++D+Y + G
Sbjct: 197 GVVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVK--NGVASFIQSSVLDMYSKCG 254

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A   F E+  ++L  W  ++  +  +    E LR++ +M+   + P+G+    ++ 
Sbjct: 255 VPREAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLS 314

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           G    M + +GK  H  +I+  +VD +  V ++L+  Y   G L  A++ F         
Sbjct: 315 GFGNSMDVFQGKAFHGVIIRRYYVD-DEKVNDSLLFMYCKFGMLSLAERIFPLCQGSG-D 372

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
            WN +V  Y         +ELF  MQ              +   ++ G V  G+ IH  V
Sbjct: 373 GWNFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCNV 432

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K   D  ++ V ++L +MYGKC  +  +  +F ++    +   N+L++S +H    ++A
Sbjct: 433 IKGFLDGKNISVTNSLVEMYGKCGKMTFAWRIFNTSE-TDVVSWNTLISSHVHIKQHEEA 491

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           V +F  MV E    +  TL   L A S  AS   G    +HC   +SGF  N+ +  +L+
Sbjct: 492 VNLFSKMVREDQKPNTATLVVVLSACSHLASLEKG--ERVHCYINESGFTLNLPLGTALI 549

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG ++ S  VF+ +   +V+C+ ++++GY  NG    AL++ + M +  ++P+ +
Sbjct: 550 DMYAKCGQLQKSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGI 609

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TFL +L+ C H+G+V+EG+ +F  MKS Y ++ + +HY+CM+D+LGR G + +AE ++  
Sbjct: 610 TFLSLLSACAHAGLVEEGKYMFARMKS-YSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLS 668

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D  +W +LL  C+ H    +G R+A   ++LEP +   Y  ++N YS IG +E +
Sbjct: 669 MPISPDGGVWGALLGHCKTHNQIEMGIRIAKYAIDLEPENDGYYIIMANMYSFIGRWEEA 728

Query: 640 MQIRETALAR-KLTRDIGHSLI 660
             +R T   R  + +  G SL+
Sbjct: 729 ENVRRTMKERCSMGKKAGWSLL 750



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/244 (27%), Positives = 129/244 (52%), Gaps = 3/244 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI  +N  ++ + K G +  A ++F+     D+V++N LIS     +  ++A+ L+ +MV
Sbjct: 441 NISVTNSLVEMYGKCGKMTFAWRIFNT-SETDVVSWNTLISSHVHIKQHEEAVNLFSKMV 499

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               K + +T   VLS CS+     +G ++HC +   GF LNL +G+ L+D+Y + G   
Sbjct: 500 REDQKPNTATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQ 559

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
           ++  +FD + E+++  WN M+  +      +  L ++  M+   V PNG++F  ++  C+
Sbjct: 560 KSRMVFDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACA 619

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              L++EGK + +  +K   V+ N+     +VD     G++ EA+     +P+  D   W
Sbjct: 620 HAGLVEEGKYMFAR-MKSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMPISPDGGVW 678

Query: 282 NSIV 285
            +++
Sbjct: 679 GALL 682



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 105/472 (22%), Positives = 203/472 (43%), Gaps = 20/472 (4%)

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLY--MRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
           ++ H   ++ G   NL++ S L+ LY  +   PS     LF  LP ++   +N  L++  
Sbjct: 24  LRFHALTVTSGHSTNLFMASKLISLYDSLNNDPS-SCSTLFHSLPSKDTFLYNSFLKSLF 82

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             S    VL +++ M+A  + PN  +   +V   +   LL  G  LH+   K G     +
Sbjct: 83  SRSLFPRVLSLFSHMRASNLSPNHFTLPIVVSAAAHLTLLPHGASLHALASKTG-----L 137

Query: 248 FVANA-LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           F ++A  V  YS CG +  A+K FD IP  DV++W +++  +         L     +  
Sbjct: 138 FHSSASFVSLYSRCGRMELARKVFDEIPKRDVVAWTALIIGHVHNGEPEKGLRCLRHVHG 197

Query: 307 C---RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
                ++P+ +++          G V  G  +HG V K G    +  +QS++ DMY KC 
Sbjct: 198 VVEDDEKPNAKTWEGGFLACGNLGAVSEGSCLHGVVVKNGV---ASFIQSSVLDMYSKCG 254

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           V   +   F     + L C  S++      G + + + +F  M +  I  D V +   L 
Sbjct: 255 VPREAYRSFCEVIHKDLLCWTSVIGVYARIGMMGECLRLFREMQENEIRPDGVVVGCVLS 314

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
               S     G  +  H   I+  +  +  V+ SL+  Y + G + L+ ++F  +   + 
Sbjct: 315 GFGNSMDVFQG--KAFHGVIIRRYYVDDEKVNDSLLFMYCKFGMLSLAERIF-PLCQGSG 371

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
             +  ++ GY + G   + +++   M   G+  + +     +A C   G V  G+ +  +
Sbjct: 372 DGWNFMVFGYGKVGENVKCVELFREMQWLGIHSETIGIASAIASCAQLGAVNLGRSIHCN 431

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           +   +    +    + +++M G+ G +  A  +   +    D + W++L+ S
Sbjct: 432 VIKGFLDGKNISVTNSLVEMYGKCGKMTFAWRIFNTSE--TDVVSWNTLISS 481



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 45/166 (27%), Positives = 76/166 (45%), Gaps = 1/166 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  +   C+ +  L     +  Y   +   LN+      ID + K G L  ++ +
Sbjct: 505 PNTATLVVVLSACSHLASLEKGERVHCYINESGFTLNLPLGTALIDMYAKCGQLQKSRMV 564

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD M  +D++ +N +ISG G   + + AL ++  M    +  +  TF S+LS C++AG  
Sbjct: 565 FDSMMEKDVICWNAMISGYGMNGYAESALEIFQHMEESNVMPNGITFLSLLSACAHAGLV 624

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            EG  +  R+ S     NL   + +VDL  R G    A  +   +P
Sbjct: 625 EEGKYMFARMKSYSVNPNLKHYTCMVDLLGRYGNVQEAEAMVLSMP 670


>gi|413918370|gb|AFW58302.1| hypothetical protein ZEAMMB73_070872 [Zea mays]
          Length = 688

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 176/587 (29%), Positives = 290/587 (49%), Gaps = 69/587 (11%)

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV---------- 195
           ++ + LV  Y R+G    A  +FD +P RN  ++N +L A+  L RPDE           
Sbjct: 53  FLLNTLVSTYARLGRLREARRVFDGIPLRNTFSYNALLSAYARLGRPDEARALFEAIPDP 112

Query: 196 -----------------------LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
                                  LR    M A+    N  SF   +  C+    L  G+Q
Sbjct: 113 DQCSYNAVVAALARHGRGHAGDALRFLAAMHADDFVLNAYSFASALSACAAEKDLRTGEQ 172

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  V +    D ++ +  ALVD Y+ C   ++A++ FD +P  +V+SWNS+++ Y    
Sbjct: 173 VHGLVARSPHAD-DVHIGTALVDMYAKCERPVDARRVFDAMPERNVVSWNSLITCYEQNG 231

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            + +AL LF  M      P   +    ++  +       G+Q+H ++ K       + + 
Sbjct: 232 PVGEALVLFVEMMATGFFPDEVTLSSVMSACAGLAAEREGRQVHAHMVKRDRLRDDMVLN 291

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI- 411
           +AL DMY KC     +  +F+S P RS+    S++     S N++DA  +F  MV++ + 
Sbjct: 292 NALVDMYAKCGRTWEARCIFDSMPSRSVVSETSILAGYAKSANVEDAQVVFSQMVEKNVI 351

Query: 412 ------------GLDE--VTLSTTLKALSV-----------SASANLGSCRL---LHCCA 443
                       G +E  + L   LK  S+           +A  N+   +L    H   
Sbjct: 352 AWNVLIAAYAQNGEEEEAIRLFVQLKRDSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHV 411

Query: 444 IKSGF------ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           +K GF      ES++ V  SL+D Y + G I+   +VFE++ + + V + +++ GY++NG
Sbjct: 412 LKEGFRFDFGPESDVFVGNSLVDMYLKTGSIDDGAKVFERMAARDNVSWNAMIVGYAQNG 471

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
             ++AL + E M+     PD VT + VL+ C HSG+V EG+  F+ M   +GI   R HY
Sbjct: 472 RAKDALHLFERMLCSNENPDSVTMIGVLSACGHSGLVDEGRRHFHFMTEDHGITPSRDHY 531

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617
           +CM+D+LGRAG L +AEEL++  P   D ++W+SLL +CR+H N  +G R A  L EL+P
Sbjct: 532 TCMVDLLGRAGHLKEAEELIKDMPTEPDSVLWASLLGACRLHKNVELGERTAGRLFELDP 591

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +   Y  +SN Y+E+G++    ++R +   R +++  G S IE+ S
Sbjct: 592 ENSGPYVLLSNMYAEMGKWADVFRVRRSMKDRGVSKQPGCSWIEIGS 638



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 128/490 (26%), Positives = 225/490 (45%), Gaps = 40/490 (8%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFR--HPKQALYL 97
           P  N +S N  +  + + G  + A+ LF+ +P  D  +YN +++   +    H   AL  
Sbjct: 79  PLRNTFSYNALLSAYARLGRPDEARALFEAIPDPDQCSYNAVVAALARHGRGHAGDALRF 138

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
              M +     +A +F+S LS C+       G Q+H  V       +++IG+ LVD+Y +
Sbjct: 139 LAAMHADDFVLNAYSFASALSACAAEKDLRTGEQVHGLVARSPHADDVHIGTALVDMYAK 198

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
               V A  +FD +PERN+ +WN ++  + +     E L ++ +M A G  P+ ++   +
Sbjct: 199 CERPVDARRVFDAMPERNVVSWNSLITCYEQNGPVGEALVLFVEMMATGFFPDEVTLSSV 258

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--- 274
           +  C+      EG+Q+H+H++K   +  ++ + NALVD Y+ CG   EA+  FD +P   
Sbjct: 259 MSACAGLAAEREGRQVHAHMVKRDRLRDDMVLNNALVDMYAKCGRTWEARCIFDSMPSRS 318

Query: 275 ----------------VDD------------VISWNSIVSIYADYDLIFDALELFFRMQL 306
                           V+D            VI+WN +++ YA      +A+ LF +++ 
Sbjct: 319 VVSETSILAGYAKSANVEDAQVVFSQMVEKNVIAWNVLIAAYAQNGEEEEAIRLFVQLKR 378

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG--FDHG---SVHVQSALTDMYGK 361
               P+  ++   LN       +  G+Q H +V K G  FD G    V V ++L DMY K
Sbjct: 379 DSIWPTHYTYGNVLNACGNIAVLQLGQQAHVHVLKEGFRFDFGPESDVFVGNSLVDMYLK 438

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
              I+    VFE    R     N+++     +G  KDA+ +F  M+      D VT+   
Sbjct: 439 TGSIDDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALHLFERMLCSNENPDSVTMIGV 498

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS- 480
           L A   S   + G  R  H      G   +      ++D   R GH++ + ++ + +P+ 
Sbjct: 499 LSACGHSGLVDEGR-RHFHFMTEDHGITPSRDHYTCMVDLLGRAGHLKEAEELIKDMPTE 557

Query: 481 PNVVCFTSIM 490
           P+ V + S++
Sbjct: 558 PDSVLWASLL 567



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/111 (24%), Positives = 52/111 (46%), Gaps = 4/111 (3%)

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           + ++ +L   R  H C +KS       +  +L+  Y+R G +  + +VF+ IP  N   +
Sbjct: 27  LRSAPSLPGARAAHGCVLKSPVAGETFLLNTLVSTYARLGRLREARRVFDGIPLRNTFSY 86

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
            ++++ Y+R G   EA  + E +      PD+ ++  V+A     G    G
Sbjct: 87  NALLSAYARLGRPDEARALFEAIPD----PDQCSYNAVVAALARHGRGHAG 133


>gi|413918945|gb|AFW58877.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 768

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 176/627 (28%), Positives = 324/627 (51%), Gaps = 13/627 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N   SN  I  + +    +SA+ +FD M  R+ V++  +I+   +      A+ L+  M+
Sbjct: 79  NTILSNHLITMYGRCAAPDSARMVFDGMLDRNPVSWAAVIAAHAQNSRCADAMGLFSSML 138

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G         S +  C+  G    G Q+H + +    G +L + + LV +Y + G   
Sbjct: 139 RLGTAPDEFALGSAVRACAELGDLGLGRQVHAQAIKSDNGGHLIVQNALVTMYSKSGSVG 198

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGC 221
               LF+ + +++L +W  ++    +  R  + L ++ +M AEG+  PN   F  + R C
Sbjct: 199 DGFALFERIRDKDLFSWGSIIAGLAQQGREMDALHIFREMIAEGMHHPNEFHFGSVFRAC 258

Query: 222 SIGM-LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           S+ +  L+ G+Q+H   +K   +D N +   +L D Y+ C  L  A K F  I   D++S
Sbjct: 259 SVVINSLEYGEQIHGLCVKYK-LDRNSYAGCSLGDMYARCNKLDSAMKVFYRIESPDLVS 317

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WNS+++ ++   L+ +A+ LF  M+    +P   + +  L        +  G+ IH Y+ 
Sbjct: 318 WNSLINAFSADGLLSEAMVLFSEMRYSSLKPDGITVMALLCACVGCDALRQGRSIHSYLV 377

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLG   G V V ++L  MY +C    S++ VF     R +   NS++T+ +   +++D  
Sbjct: 378 KLGLG-GDVMVCNSLISMYTRCLDFPSAMDVFHETNDRDVVTWNSILTACVQHRHMEDVF 436

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNIAVSCS 457
           ++F  +      LD ++L+  L     SASA LG     + +H  A K G  S+  +S +
Sbjct: 437 KLFRLLHSSMPSLDRISLNNVL-----SASAELGYFEMAKQVHAYAFKVGLVSDAILSNA 491

Query: 458 LMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           L+D Y++CG ++ ++++FE + +  +V  ++S++ GY++ G  +EALD+   M   G+ P
Sbjct: 492 LIDTYAKCGSLDDANKLFEIMGTGRDVFSWSSLIVGYAQFGYAKEALDLFARMRNLGVKP 551

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + VTF+ VL  C+  G+V EG   ++ M+  YGI   ++H SC+ID+L RAG L +A + 
Sbjct: 552 NHVTFVGVLIACSRVGLVDEGCYYYSIMEPEYGIVPTKEHCSCVIDLLARAGRLSEAAKF 611

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           + Q P   D +MW++LL + R H +  +G+R A  ++ ++P   A Y  + N Y+  G +
Sbjct: 612 VDQMPFEPDIIMWNTLLAASRTHNDVEMGKRAAEGVLNIDPSHSAAYVLLCNIYASSGNW 671

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
               ++++   +  + +  G S I++ 
Sbjct: 672 NEFARLKKDMRSSGVQKSPGKSWIKLK 698


>gi|90399180|emb|CAJ86042.1| H0723C07.12 [Oryza sativa Indica Group]
          Length = 886

 Score =  276 bits (706), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 164/559 (29%), Positives = 289/559 (51%), Gaps = 7/559 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E     + +L   +       G+Q+H  ++ LGFG +  + + L+D+Y + G    A ++
Sbjct: 198 ERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEV 257

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD +PERN+ +W  ++  F       E LR++ +M+  G  PN  +    ++ C  G   
Sbjct: 258 FDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGT-- 315

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G Q+H   ++ G+   ++ VAN+LV  YS      +A++ FD IP  ++ +WNS++S 
Sbjct: 316 RAGVQIHGVCVRTGFEGHDV-VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISG 374

Query: 288 YADYDLIFDALELFFRMQLCR-KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           YA      D+L +F  MQ    ++P   +F   L   S  G    G Q+H  +   G   
Sbjct: 375 YAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSP 434

Query: 347 GSVHV-QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
            S  +   AL D+Y KC+ +  ++ VF+    R+     +++      G +K+A+ +F  
Sbjct: 435 ASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRR 494

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
               G+  D   LS+ +   +  A    G  + +HC   K+    +++V+ SL+D Y +C
Sbjct: 495 FWSSGVRADGHVLSSVVAVFADFALVEQG--KQVHCYTAKTPAGLDVSVANSLVDMYLKC 552

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G    + + F ++P+ NVV +T+++NG  ++G GREA+D+ E M   G+  D+V +L +L
Sbjct: 553 GLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALL 612

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+HSG+V E +  F+ +     +    +HY+CM+D+LGRAG L +A+EL+   P    
Sbjct: 613 SACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPT 672

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             +W +LL +CRVH +  +GR V ++L+ ++  +   Y  +SN  +E GE+     IR  
Sbjct: 673 VGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGA 732

Query: 646 ALARKLTRDIGHSLIEVNS 664
              + L +  G S  EV+ 
Sbjct: 733 MRRKGLRKQGGCSWTEVDK 751



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 125/470 (26%), Positives = 216/470 (45%), Gaps = 18/470 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ID + K G L+ A ++FD MP R++V++  L+ G       ++ L L+ EM   G 
Sbjct: 238 NNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGT 297

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +  T S+ L  C   G    G+QIH   +  GF  +  + + LV +Y +   +  A  
Sbjct: 298 SPNEFTLSATLKAC--GGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARR 355

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGM 225
           +FD +P RNLATWN M+  +    +  + L ++ +M+    E P+  +F  +++ CS   
Sbjct: 356 VFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLG 415

Query: 226 LLDEGKQLHSHVIKLGWVDV-NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              EG Q+H+ +   G     N  +A AL+D Y  C  L  A + FD +   + I W ++
Sbjct: 416 AAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTV 475

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-- 342
           +  +A    + +A+ LF R      R         +   +    V  GKQ+H Y  K   
Sbjct: 476 IVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPA 535

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G D   V V ++L DMY KC +   +   F   P R++    +++  +   G+ ++A+++
Sbjct: 536 GLD---VSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDL 592

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR--LLHCCAIKSGFESNIAVSCSLMD 460
           F  M  EG+  DEV     L A S S   +   CR      C  +         +C ++D
Sbjct: 593 FEEMQAEGVEADEVAYLALLSACSHSGLVD--ECRRYFSRICQDRRMRPKAEHYAC-MVD 649

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
              R G +  + ++   +P  P V  + ++++    +    +GRE  D+L
Sbjct: 650 LLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVL 699



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 125/249 (50%), Gaps = 1/249 (0%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P  N   +   +D +VK   L  A ++FD +  R+ + +  +I G  +    K+A+ L+
Sbjct: 433 SPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLF 492

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
               S G++      SSV++V ++     +G Q+HC       GL++ + + LVD+Y++ 
Sbjct: 493 RRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKC 552

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G +  A   F E+P RN+ +W  M+    +     E + ++ +M+AEGVE + +++  ++
Sbjct: 553 GLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALL 612

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             CS   L+DE ++  S + +   +         +VD     G L EAK+    +P++  
Sbjct: 613 SACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPT 672

Query: 279 IS-WNSIVS 286
           +  W +++S
Sbjct: 673 VGVWQTLLS 681


>gi|115461454|ref|NP_001054327.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|38345824|emb|CAE01858.2| OSJNBa0070M12.7 [Oryza sativa Japonica Group]
 gi|113565898|dbj|BAF16241.1| Os04g0686500 [Oryza sativa Japonica Group]
 gi|215766744|dbj|BAG98972.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222629815|gb|EEE61947.1| hypothetical protein OsJ_16704 [Oryza sativa Japonica Group]
          Length = 690

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 164/559 (29%), Positives = 290/559 (51%), Gaps = 7/559 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E     + +L   +       G+Q+H  ++ LGFG +  + + L+D+Y + G    A ++
Sbjct: 2   ERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEV 61

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD +PERN+ +W  ++  F       E LR++ +M+  G  PN  +    ++ C  G   
Sbjct: 62  FDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGT-- 119

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G Q+H   ++ G+   ++ VAN+LV  YS      +A++ FD IP  ++ +WNS++S 
Sbjct: 120 RAGVQIHGVCVRTGFEGHDV-VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISG 178

Query: 288 YADYDLIFDALELFFRMQLCR-KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           YA      D+L +F  MQ    ++P   +F   L   S  G    G Q+H  +   G   
Sbjct: 179 YAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSP 238

Query: 347 GSVHV-QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
            S  +   AL D+Y KC+ +  ++ VF+    R+     +++      G +K+A+ +F  
Sbjct: 239 ASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRR 298

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
               G+  D   LS+ +   +  A    G  + +HC   K+    +++V+ SL+D Y +C
Sbjct: 299 FWSSGVRADGHVLSSVVAVFADFALVEQG--KQVHCYTAKTPAGLDVSVANSLVDMYLKC 356

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G    + + F ++P+ NVV +T+++NG  ++G GREA+D+ E M + G+  D+V +L +L
Sbjct: 357 GLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALL 416

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+HSG+V E +  F+ +     +    +HY+CM+D+LGRAG L +A+EL+   P    
Sbjct: 417 SACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPT 476

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             +W +LL +CRVH +  +GR V ++L+ ++  +   Y  +SN  +E GE+     IR  
Sbjct: 477 VGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGA 536

Query: 646 ALARKLTRDIGHSLIEVNS 664
              + L +  G S  EV+ 
Sbjct: 537 MRRKGLRKQGGCSWTEVDK 555



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 222/474 (46%), Gaps = 26/474 (5%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ID + K G L+ A ++FD MP R++V++  L+ G       ++ L L+ EM   G 
Sbjct: 42  NNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGT 101

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +  T S+ L  C   G    G+QIH   +  GF  +  + + LV +Y +   +  A  
Sbjct: 102 SPNEFTLSATLKAC--GGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARR 159

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGM 225
           +FD +P RNLATWN M+  +    +  + L ++ +M+    E P+  +F  +++ CS   
Sbjct: 160 VFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLG 219

Query: 226 LLDEGKQLHSHVIKLGWVDV-NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              EG Q+H+ +   G     N  +A AL+D Y  C  L  A + FD +   + I W ++
Sbjct: 220 AAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTV 279

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPS---IRSFVE-FLNFASRTGNVYFGKQIHGYVT 340
           +  +A    + +A+ LF R      R     + S V  F +FA     V  GKQ+H Y  
Sbjct: 280 IVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFAL----VEQGKQVHCYTA 335

Query: 341 KL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           K   G D   V V ++L DMY KC +   +   F   P R++    +++  +   G+ ++
Sbjct: 336 KTPAGLD---VSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGRE 392

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR--LLHCCAIKSGFESNIAVSC 456
           A+++F  M +EG+  DEV     L A S S   +   CR      C  +         +C
Sbjct: 393 AIDLFEEMQEEGVEADEVAYLALLSACSHSGLVD--ECRRYFSRICQDRRMRPKAEHYAC 450

Query: 457 SLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
            ++D   R G +  + ++   +P  P V  + ++++    +    +GRE  D+L
Sbjct: 451 -MVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVL 503



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 62/249 (24%), Positives = 124/249 (49%), Gaps = 1/249 (0%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P  N   +   +D +VK   L  A ++FD +  R+ + +  +I G  +    K+A+ L+
Sbjct: 237 SPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLF 296

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
               S G++      SSV++V ++     +G Q+HC       GL++ + + LVD+Y++ 
Sbjct: 297 RRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKC 356

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G +  A   F E+P RN+ +W  M+    +     E + ++ +M+ EGVE + +++  ++
Sbjct: 357 GLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQEEGVEADEVAYLALL 416

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             CS   L+DE ++  S + +   +         +VD     G L EAK+    +P++  
Sbjct: 417 SACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPT 476

Query: 279 IS-WNSIVS 286
           +  W +++S
Sbjct: 477 VGVWQTLLS 485


>gi|297604953|ref|NP_001056393.2| Os05g0574800 [Oryza sativa Japonica Group]
 gi|255676596|dbj|BAF18307.2| Os05g0574800 [Oryza sativa Japonica Group]
          Length = 857

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 172/627 (27%), Positives = 316/627 (50%), Gaps = 9/627 (1%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P   +   N  +   V+ G +  A ++F +MP RD+ ++N+++ G GK    ++AL LY
Sbjct: 126 HPSFGLRLGNAMLSMLVRFGEIWHAWRVFAKMPERDVFSWNVMVGGYGKVGFLEEALDLY 185

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M+  G++    TF  VL  C     +  G ++H  VL  GFG  + + + LV +Y + 
Sbjct: 186 YRMLWAGMRPDVYTFPCVLRTCGGIPDWRMGREVHAHVLRFGFGDEVDVLNALVTMYAKC 245

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G  V A  +FD +   +  +WN M+    E    +  L ++  M    V+PN ++   + 
Sbjct: 246 GDIVAARKVFDGMAVTDCISWNAMIAGHFENHECEAGLELFLTMLENEVQPNLMTITSVT 305

Query: 219 RGCSIGMLLDEG--KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
              + GML + G  K++H   +K G+  +++   N+L+  Y++ G + +A K F  +   
Sbjct: 306 --VASGMLSEVGFAKEMHGFAVKRGFA-IDVAFCNSLIQMYTSLGRMGDAGKIFSRMETK 362

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D +SW +++S Y        ALE++  M+L    P   +    L   +  G +  G ++H
Sbjct: 363 DAMSWTAMISGYEKNGFPDKALEVYALMELHNVSPDDVTIASALAACACLGRLDVGIKLH 422

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
                 GF    V V +AL +MY K   I+ ++ VF+    + +   +S++     +   
Sbjct: 423 ELAQNKGFIRYVV-VANALLEMYAKSKHIDKAIEVFKFMAEKDVVSWSSMIAGFCFNHRS 481

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            +A+  F +M+   +  + VT    L A   +A+  L S + +H   ++ G  S   V  
Sbjct: 482 FEALYYFRYMLGH-VKPNSVTFIAALSA--CAATGALRSGKEIHAYVLRCGIGSEGYVPN 538

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y +CG    +   F      +VV +  +++G+  +G+G  AL +   M++ G  P
Sbjct: 539 ALLDLYVKCGQTSYAWAQFSVHSEKDVVSWNIMLSGFVAHGLGDIALSLFNQMVEMGEHP 598

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D+VTF+ +L  C+ +GMV +G  +F+ M   + I  + +HY+CM+D+L R G L +A  L
Sbjct: 599 DEVTFVALLCACSRAGMVIQGWELFHMMTEKFSIVPNLKHYACMVDLLSRVGKLTEAYNL 658

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           + + P   D  +W +LL  CR+H +  +G   A +++ELEP D A +  + + Y++ G++
Sbjct: 659 INRMPIKPDAAVWGALLNGCRIHRHVELGELAAKVILELEPNDVAYHVLLCDLYTDAGKW 718

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
               ++R+T   + L +D G S +EV 
Sbjct: 719 AQVARVRKTMREKGLEQDNGCSWVEVK 745


>gi|449455978|ref|XP_004145727.1| PREDICTED: uncharacterized protein LOC101212001 [Cucumis sativus]
          Length = 2598

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 162/508 (31%), Positives = 270/508 (53%), Gaps = 17/508 (3%)

Query: 167  LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
             +  + + N+ +WN ++          E LR ++ ++  G+ P   SF   ++ CS    
Sbjct: 1971 FYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPCTIKSCSALCD 2030

Query: 227  LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
            L  G+  H      G+ + ++FV++AL+D YS CG L +A+  FD IP+ +V+SW S+++
Sbjct: 2031 LVSGRMSHQQAFVFGF-ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMIT 2089

Query: 287  IYADYDLIFDALELFFRMQLCRKRPSIRS----------FVEFLNFASRTGNVYFGKQIH 336
             Y   +   +AL LF       +   +             V  L+  SR       + +H
Sbjct: 2090 GYVQNEQADNALLLF--KDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEGVH 2147

Query: 337  GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            G+V K GFD GS+ V + L D Y KC     S  VF+    +     NS++     SG  
Sbjct: 2148 GFVVKKGFD-GSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLS 2206

Query: 397  KDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             +A+E+F  MV   G+  + VTLS  L A + + +   G C  +H   IK   E N+ V 
Sbjct: 2207 GEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKC--IHDQVIKMDLEYNVCVG 2264

Query: 456  CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             S++D Y +CG +E++ + F+++   NV  +T+++ GY  +G  +EALD+   M++ G+ 
Sbjct: 2265 TSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVK 2324

Query: 516  PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
            P+ +TF+ VLA C+H+G+V+EG   FN+MK  Y I+   +HY CM+D+ GRAG L++A  
Sbjct: 2325 PNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYN 2384

Query: 576  LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            L+++     D ++W SLL +CR+H N  +G   A  L EL+P +   Y  +SN Y++ G 
Sbjct: 2385 LIKRMKMKPDFVVWGSLLGACRIHKNVDLGEIAAQKLFELDPDNCGYYVLLSNLYADAGR 2444

Query: 636  FEVSMQIRETALARKLTRDIGHSLIEVN 663
            +    ++R     R+L +  G SL+E+ 
Sbjct: 2445 WADVERMRMLMKNRQLVKPPGFSLVELK 2472



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 123/489 (25%), Positives = 226/489 (46%), Gaps = 31/489 (6%)

Query: 56   KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
            +  H N A   +  +   ++ ++N +I+   +     +AL  +  +   G+  + S+F  
Sbjct: 1961 REDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPC 2020

Query: 116  VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
             +  CS       G   H +    GF  +L++ S L+D+Y + G    A  LFDE+P RN
Sbjct: 2021 TIKSCSALCDLVSGRMSHQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIPLRN 2080

Query: 176  LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG--------------LSFCYMVRGC 221
            + +W  M+  + +  + D  L ++     E  E                 LS C  V G 
Sbjct: 2081 VVSWTSMITGYVQNEQADNALLLFKDFLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGK 2140

Query: 222  SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
             I     EG  +H  V+K G+ D +I V N L+D Y+ CG  + +KK FD++   D ISW
Sbjct: 2141 GI----TEG--VHGFVVKKGF-DGSIGVGNTLMDAYAKCGQPLVSKKVFDWMEEKDDISW 2193

Query: 282  NSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
            NS++++YA   L  +ALE+F  M +    R +  +    L   +  G +  GK IH  V 
Sbjct: 2194 NSMIAVYAQSGLSGEALEVFHGMVRHVGVRYNAVTLSAVLLACAHAGALRAGKCIHDQVI 2253

Query: 341  KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            K+  ++ +V V +++ DMY KC  +E +   F+    ++++   +++      G  K+A+
Sbjct: 2254 KMDLEY-NVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAKEAL 2312

Query: 401  EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            ++F  MV  G+  + +T  + L A S +     G     +    K   E  I     ++D
Sbjct: 2313 DIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEG-WHWFNAMKHKYDIEPGIEHYGCMVD 2371

Query: 461  AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR--GLIPD 517
             + R G +  ++ + +++   P+ V + S++ G  R     + +D+ E+  Q+   L PD
Sbjct: 2372 LFGRAGCLNEAYNLIKRMKMKPDFVVWGSLL-GACR---IHKNVDLGEIAAQKLFELDPD 2427

Query: 518  KVTFLCVLA 526
               +  +L+
Sbjct: 2428 NCGYYVLLS 2436



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 93/319 (29%), Positives = 157/319 (49%), Gaps = 33/319 (10%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH +++  G   +  +   L+ LY   G    A+ LF ++      TWNL++RA     
Sbjct: 45  QIHAKIIRSGLSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTING 104

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             ++ L +Y  M  +G+  +  +F ++++ C+  + +D GK +H  +IK G+   ++FV 
Sbjct: 105 LSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSG-DVFVQ 163

Query: 251 NALVDFY-------------------------------SACGSLIEAKKSFDFIPVDDVI 279
           N L+DFY                                +CG L EA++ FD IP  +V+
Sbjct: 164 NNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVV 223

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW ++++ Y       +ALELF RMQ     P+  + V  +   +  G +  G+ IH Y 
Sbjct: 224 SWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYA 283

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K   + G V++ +AL DMY KC  I+ ++ VFE+ P +SL   NS++TSL   G  ++A
Sbjct: 284 IKNCIEIG-VYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEA 342

Query: 400 VEMFGFMVDEGIGLDEVTL 418
           + +F  M    +  D +T 
Sbjct: 343 LNLFSEMERVNVKPDAITF 361



 Score =  138 bits (348), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 179/379 (47%), Gaps = 45/379 (11%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H+ +I+ G +  +  +   L+  YS  G +  A   F  I      +WN I+     
Sbjct: 44  RQIHAKIIRSG-LSNDQLLTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTI 102

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFL-----NFASRTGNVYFGKQIHGYVTKLGFD 345
             L   AL L+  M +C+   + +    F+     NF S    +  GK +HG + K GF 
Sbjct: 103 NGLSEQALMLYKNM-VCQGIAADKFTFPFVIKACTNFLS----IDLGKVVHGSLIKYGFS 157

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA------ 399
            G V VQ+ L D Y KC     ++ VFE    R++    ++++ L+  G++++A      
Sbjct: 158 -GDVFVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDE 216

Query: 400 -------------------------VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
                                    +E+F  M  E I  +E T+ + +KA +      LG
Sbjct: 217 IPSKNVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLG 276

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS 494
             R +H  AIK+  E  + +  +L+D YS+CG I+ + +VFE +P  ++  + S++    
Sbjct: 277 --RGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLG 334

Query: 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
            +G+G+EAL++   M +  + PD +TF+ VL  C H   VKEG   F  M   YGI    
Sbjct: 335 VHGLGQEALNLFSEMERVNVKPDAITFIGVLCACVHIKNVKEGCAYFTRMTQHYGIAPIP 394

Query: 555 QHYSCMIDMLGRAGILDKA 573
           +HY CM ++  R+  LD+A
Sbjct: 395 EHYECMTELYARSNNLDEA 413



 Score =  135 bits (341), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 91/338 (26%), Positives = 171/338 (50%), Gaps = 24/338 (7%)

Query: 41   QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            + +++ S+  ID + K G L  A+ LFDE+P R++V++  +I+G  +      AL L+ +
Sbjct: 2047 ETDLFVSSALIDMYSKCGQLKDARALFDEIPLRNVVSWTSMITGYVQNEQADNALLLFKD 2106

Query: 101  MVS--------HGIKESASTFSSVLSVCS--NAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
             +         + +   +    SVLS CS  +    TEG  +H  V+  GF  ++ +G+ 
Sbjct: 2107 FLEEETEVEDGNNVPLDSVVMVSVLSACSRVSGKGITEG--VHGFVVKKGFDGSIGVGNT 2164

Query: 151  LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEP 209
            L+D Y + G  + +  +FD + E++  +WN M+  + +     E L +++ M +  GV  
Sbjct: 2165 LMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGVRY 2224

Query: 210  NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
            N ++   ++  C+    L  GK +H  VIK+  ++ N+ V  +++D Y  CG +  AKK+
Sbjct: 2225 NAVTLSAVLLACAHAGALRAGKCIHDQVIKMD-LEYNVCVGTSIIDMYCKCGRVEMAKKT 2283

Query: 270  FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
            FD +   +V SW ++V+ Y  +    +AL++F++M     +P+  +FV  L   S  G V
Sbjct: 2284 FDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGLV 2343

Query: 330  -----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
                 +F    H Y  + G +H        + D++G+ 
Sbjct: 2344 EEGWHWFNAMKHKYDIEPGIEH-----YGCMVDLFGRA 2376



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 166/356 (46%), Gaps = 38/356 (10%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           + + I  +   G +  A  LF ++      T+NL+I         +QAL LY  MV  GI
Sbjct: 62  TRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTINGLSEQALMLYKNMVCQGI 121

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                TF  V+  C+N      G  +H  ++  GF  ++++ + L+D Y + G +  AL 
Sbjct: 122 AADKFTFPFVIKACTNFLSIDLGKVVHGSLIKYGFSGDVFVQNNLIDFYFKCGHTRFALK 181

Query: 167 -------------------------------LFDELPERNLATWNLMLRAFCELSRPDEV 195
                                          +FDE+P +N+ +W  M+  +    +P+E 
Sbjct: 182 VFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEA 241

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L ++ +M+AE + PN  +   +++ C+   +L  G+ +H + IK   +++ +++  AL+D
Sbjct: 242 LELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIK-NCIEIGVYLGTALID 300

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            YS CGS+ +A + F+ +P   + +WNS+++    + L  +AL LF  M+    +P   +
Sbjct: 301 MYSKCGSIKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAIT 360

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ---SALTDMYGKCNVIESS 368
           F+  L       NV   K+   Y T++   +G   +      +T++Y + N ++ +
Sbjct: 361 FIGVLCACVHIKNV---KEGCAYFTRMTQHYGIAPIPEHYECMTELYARSNNLDEA 413



 Score =  109 bits (273), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 74/264 (28%), Positives = 132/264 (50%), Gaps = 9/264 (3%)

Query: 48   NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GI 106
            N  +D + K G    +KK+FD M  +D +++N +I+   +     +AL ++  MV H G+
Sbjct: 2163 NTLMDAYAKCGQPLVSKKVFDWMEEKDDISWNSMIAVYAQSGLSGEALEVFHGMVRHVGV 2222

Query: 107  KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
            + +A T S+VL  C++AG    G  IH +V+ +    N+ +G+ ++D+Y + G    A  
Sbjct: 2223 RYNAVTLSAVLLACAHAGALRAGKCIHDQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKK 2282

Query: 167  LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
             FD + E+N+ +W  M+  +    R  E L ++ KM   GV+PN ++F  ++  CS   L
Sbjct: 2283 TFDRMKEKNVKSWTAMVAGYGMHGRAKEALDIFYKMVRAGVKPNYITFVSVLAACSHAGL 2342

Query: 227  LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK---KSFDFIPVDDVISWNS 283
            ++EG    + +     ++  I     +VD +   G L EA    K     P  D + W S
Sbjct: 2343 VEEGWHWFNAMKHKYDIEPGIEHYGCMVDLFGRAGCLNEAYNLIKRMKMKP--DFVVWGS 2400

Query: 284  IVS---IYADYDLIFDALELFFRM 304
            ++    I+ + DL   A +  F +
Sbjct: 2401 LLGACRIHKNVDLGEIAAQKLFEL 2424



 Score =  102 bits (255), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 79/319 (24%), Positives = 148/319 (46%), Gaps = 41/319 (12%)

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           +QIH  + + G  +  + +   L  +Y     I  ++ +F           N ++ +   
Sbjct: 44  RQIHAKIIRSGLSNDQL-LTRKLIHLYSTHGRIAYAILLFYQIQNPCTFTWNLIIRANTI 102

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           +G  + A+ ++  MV +GI  D+ T    +KA +   S +LG  +++H   IK GF  ++
Sbjct: 103 NGLSEQALMLYKNMVCQGIAADKFTFPFVIKACTNFLSIDLG--KVVHGSLIKYGFSGDV 160

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEK-------------------------------IPSP 481
            V  +L+D Y +CGH   + +VFEK                               IPS 
Sbjct: 161 FVQNNLIDFYFKCGHTRFALKVFEKMRVRNVVSWTTVISGLISCGDLQEARRIFDEIPSK 220

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           NVV +T+++NGY RN    EAL++ + M    + P++ T + ++  C   G++  G+ + 
Sbjct: 221 NVVSWTAMINGYIRNQQPEEALELFKRMQAENIFPNEYTMVSLIKACTEMGILTLGRGIH 280

Query: 542 N-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           + ++K+   I+      + +IDM  + G +  A E+ +  P       W+S++ S  VHG
Sbjct: 281 DYAIKNC--IEIGVYLGTALIDMYSKCGSIKDAIEVFETMPRKS-LPTWNSMITSLGVHG 337

Query: 601 NEIIGRRVANILMELEPVD 619
              +G+   N+  E+E V+
Sbjct: 338 ---LGQEALNLFSEMERVN 353



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 48/179 (26%), Positives = 100/179 (55%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+ S    I   +  G L  A+++FDE+P++++V++  +I+G  + + P++AL L+  M 
Sbjct: 190 NVVSWTTVISGLISCGDLQEARRIFDEIPSKNVVSWTAMINGYIRNQQPEEALELFKRMQ 249

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  I  +  T  S++  C+  G  T G  IH   +     + +Y+G+ L+D+Y + G   
Sbjct: 250 AENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGSIK 309

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A+++F+ +P ++L TWN M+ +        E L ++++M+   V+P+ ++F  ++  C
Sbjct: 310 DAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCAC 368



 Score = 62.4 bits (150), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 44/157 (28%), Positives = 76/157 (48%), Gaps = 6/157 (3%)

Query: 33   DSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPK 92
            D   + + + N+      ID + K G +  AKK FD M  +++ ++  +++G G     K
Sbjct: 2250 DQVIKMDLEYNVCVGTSIIDMYCKCGRVEMAKKTFDRMKEKNVKSWTAMVAGYGMHGRAK 2309

Query: 93   QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRV---LSLGFGLNLYIGS 149
            +AL ++ +MV  G+K +  TF SVL+ CS+AG   EG      +     +  G+  Y   
Sbjct: 2310 EALDIFYKMVRAGVKPNYITFVSVLAACSHAGLVEEGWHWFNAMKHKYDIEPGIEHY--G 2367

Query: 150  PLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRA 185
             +VDL+ R G    A +L   +  + +   W  +L A
Sbjct: 2368 CMVDLFGRAGCLNEAYNLIKRMKMKPDFVVWGSLLGA 2404



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/137 (27%), Positives = 63/137 (45%), Gaps = 1/137 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPN-PQLNIYSSNRTIDDFVKSGH 59
           M +  + P   T+ +L   CT +  L+    +  Y   N  ++ +Y     ID + K G 
Sbjct: 248 MQAENIFPNEYTMVSLIKACTEMGILTLGRGIHDYAIKNCIEIGVYLGTALIDMYSKCGS 307

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A ++F+ MP + + T+N +I+  G     ++AL L+ EM    +K  A TF  VL  
Sbjct: 308 IKDAIEVFETMPRKSLPTWNSMITSLGVHGLGQEALNLFSEMERVNVKPDAITFIGVLCA 367

Query: 120 CSNAGFYTEGIQIHCRV 136
           C +     EG     R+
Sbjct: 368 CVHIKNVKEGCAYFTRM 384



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 33/130 (25%), Positives = 61/130 (46%), Gaps = 2/130 (1%)

Query: 464  RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
            R  H  L+   ++ +   NV  + S++   +R G   EAL     + + GLIP + +F C
Sbjct: 1961 REDHSNLATWFYKYVDKSNVHSWNSVIADLARGGDSVEALRAFSSLRKLGLIPTRSSFPC 2020

Query: 524  VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
             +  C+    +  G++  +    V+G + D    S +IDM  + G L  A  L  + P  
Sbjct: 2021 TIKSCSALCDLVSGRMS-HQQAFVFGFETDLFVSSALIDMYSKCGQLKDARALFDEIP-L 2078

Query: 584  GDCMMWSSLL 593
             + + W+S++
Sbjct: 2079 RNVVSWTSMI 2088


>gi|242037437|ref|XP_002466113.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
 gi|241919967|gb|EER93111.1| hypothetical protein SORBIDRAFT_01g001570 [Sorghum bicolor]
          Length = 693

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 186/632 (29%), Positives = 319/632 (50%), Gaps = 23/632 (3%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++    + +D  +KSG L+ A  LFD MP +++V +   ISGC +   P+ A  ++ 
Sbjct: 38  PPPDVVLDCKRLDALMKSGRLSDALDLFDRMPRKNVVAWTTAISGCTRNGQPEAAAAMFA 97

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTE----GIQIHCRVLSLGFGLNLYIGSPLVDLY 155
           +M+  G+  +A+ F+   ++ + A         G Q+H   +  GF  + +IGS L++LY
Sbjct: 98  DMLESGV--AANDFACNAALAACAAAGAGALSLGEQVHSLAVRAGFAADAWIGSCLIELY 155

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFC---ELSRPDEVLRMYNKMKAEGVEPNGL 212
            R G    A ++F  +   ++  +  ++ A C   +L+R  EVL    +M  +G++PN  
Sbjct: 156 SRCGSMWAAEEVFRRMEAPDVVGYTSLVSALCRNGDLARAVEVL---CQMMRQGLQPNEH 212

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   M+  C   +    G+Q+H +++K+     +++ + AL+DFYS  G    A+  F+ 
Sbjct: 213 TMTSMLAECPRMI----GEQIHGYMLKV-MGSQSVYASTALIDFYSRYGDFDMAETVFEN 267

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +   +V+SW S++ +      + DAL +F  M      P+  +F   L      G+V  G
Sbjct: 268 LDSKNVVSWCSMMQLCIRDGRLEDALRVFSEMISEAVEPNEFAFSIALG---ACGSVCLG 324

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           +QIH    K       + V +AL  MYG+   +    AV        L    + +++   
Sbjct: 325 RQIHCSAIKCNL-MTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQ 383

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           +G  + AV +   M  EG   ++   S+ L   S +  A L   R LHC A+K G +  +
Sbjct: 384 NGFSEKAVALLLQMHSEGFTPNDYAFSSGLS--SCADLALLDQGRQLHCLALKLGCDFKV 441

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
               +L++ YS+CG I  +   F+ +   +V+ + S+++G +++G     L+    M   
Sbjct: 442 CTGNALINMYSKCGQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSS 501

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G  PD  TF+ VL GCNH+G+VKEG+  F  M   YG+     HY+CMIDMLGR G  D+
Sbjct: 502 GWQPDDSTFIAVLVGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYACMIDMLGRNGRFDE 561

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           A  +++  P   D ++W +LL SC++H N  IG+   + LMEL   D A Y  +SN Y+ 
Sbjct: 562 ALHMIKNMPFEPDVLIWKTLLASCKLHKNLDIGKLATDKLMELSERDSASYVLMSNLYAM 621

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             E++ + ++R       + +D G S IEV +
Sbjct: 622 HEEWQDAERVRRRMDEIGVKKDAGWSWIEVKN 653



 Score = 80.9 bits (198), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 58/250 (23%), Positives = 118/250 (47%), Gaps = 3/250 (1%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N   +I  SN  +  + +SG ++  + +  ++   D+V++   IS   +    ++A+ L 
Sbjct: 335 NLMTDIRVSNALLSMYGRSGFVSEVEAVLGKIENPDLVSWTAAISANFQNGFSEKAVALL 394

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            +M S G   +   FSS LS C++     +G Q+HC  L LG    +  G+ L+++Y + 
Sbjct: 395 LQMHSEGFTPNDYAFSSGLSSCADLALLDQGRQLHCLALKLGCDFKVCTGNALINMYSKC 454

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A   FD +   ++ +WN ++    +    + VL  +++M + G +P+  +F  ++
Sbjct: 455 GQIGSARLAFDVMNLHDVMSWNSLIHGLAQHGAANLVLEAFSEMCSSGWQPDDSTFIAVL 514

Query: 219 RGCSIGMLLDEGKQLHSHVI-KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD- 276
            GC+   L+ EG+     +  + G        A  ++D     G   EA      +P + 
Sbjct: 515 VGCNHAGLVKEGETFFRLMTDRYGLTPTPSHYA-CMIDMLGRNGRFDEALHMIKNMPFEP 573

Query: 277 DVISWNSIVS 286
           DV+ W ++++
Sbjct: 574 DVLIWKTLLA 583


>gi|357166812|ref|XP_003580863.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g15130-like [Brachypodium distachyon]
          Length = 707

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 160/544 (29%), Positives = 288/544 (52%), Gaps = 11/544 (2%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G Q+H  +L LGFG +  +G+ L+D+Y + G    A ++F  +PERN+ +W  ++  F  
Sbjct: 23  GAQLHGALLKLGFGSDTMLGNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLR 82

Query: 189 LSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                E LR+   M++   V PN  +    ++ C +   +  G  +H   ++ G+   ++
Sbjct: 83  HGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHV 142

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            VAN+LV  YS  G + +A++ FD     ++++WN+++S YA      D+L +F  MQ  
Sbjct: 143 -VANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQR 201

Query: 308 RK-----RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV-QSALTDMYGK 361
           R+     +P   +F   L      G    G Q+H  +   G    S  +   AL DMY K
Sbjct: 202 RQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVK 261

Query: 362 CN-VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           C  ++  ++ VF     ++     +++      G +K+A+E+FG     G+  D   LS+
Sbjct: 262 CRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSS 321

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            +   +  A    G  R +HC  +K+    +++V+ SL+D Y +CG  + + + F ++P+
Sbjct: 322 VVGVFADFALVEQG--RQVHCYTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPA 379

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            NVV +T+++NG  ++G G+EA+ M E M   G+ PD+V +L +L+ C+HSG+V+E +  
Sbjct: 380 RNVVSWTAMINGLGKHGHGQEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEECRRY 439

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F++++    +    +HY+CM+D+LGRAG L +A++L+   P      +W +LL +CRVH 
Sbjct: 440 FSAIRHDRRLRPRAEHYACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHK 499

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           N  +GR     L+ ++  +   Y  +SN ++E G++    ++R     R L +  G S +
Sbjct: 500 NVTVGREAGETLLAIDGDNPVNYVMLSNIFAEAGDWRECQRVRGAMRRRGLRKQGGCSWV 559

Query: 661 EVNS 664
           EV  
Sbjct: 560 EVGK 563



 Score =  145 bits (365), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/476 (25%), Positives = 210/476 (44%), Gaps = 22/476 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HG 105
            N  ID + K G L  A ++F  MP R++V++  L+ G  +    ++ L L   M S   
Sbjct: 42  GNNLIDMYAKCGELRMAGEVFGGMPERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSD 101

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +  +  T S+ L  C   G    G+ IH   +  GF  +  + + LV LY + G    A 
Sbjct: 102 VAPNEFTLSASLKACGVVGDMAAGVWIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDAR 161

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA-----EGVEPNGLSFCYMVRG 220
            +FD    RNL TWN M+  +       + L ++ +M+      E  +P+  +F  +++ 
Sbjct: 162 RVFDGTVFRNLVTWNAMISGYAHAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKA 221

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDV-NIFVANALVDFYSACGSLIE-AKKSFDFIPVDDV 278
           C       EG Q+H+ ++  G     N  +A AL+D Y  C  L+  A + F+ +   + 
Sbjct: 222 CGSLGAAREGAQVHAAMVIRGVSTASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNA 281

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           I W +++  +A    + +A+ELF R      R         +   +    V  G+Q+H Y
Sbjct: 282 IQWTTVIVGHAQEGQVKEAMELFGRFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCY 341

Query: 339 VTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             K   G D   V V ++L DMY KC + + +   F   P R++    +++  L   G+ 
Sbjct: 342 TVKTPAGLD---VSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHG 398

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG--FESNIAV 454
           ++A+ MF  M  EG+  DEV     L A S S       CR  +  AI+           
Sbjct: 399 QEAIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVE--ECR-RYFSAIRHDRRLRPRAEH 455

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
              ++D   R G +  +  +   +P +P V  + ++++    +    +GREA + L
Sbjct: 456 YACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSACRVHKNVTVGREAGETL 511



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 192/395 (48%), Gaps = 17/395 (4%)

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           M+R  +    +  G QLH  ++KLG+   +  + N L+D Y+ CG L  A + F  +P  
Sbjct: 10  MLRASAASSAIHGGAQLHGALLKLGF-GSDTMLGNNLIDMYAKCGELRMAGEVFGGMPER 68

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQ-LCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
           +V+SW +++  +  +    + L L   M+ L    P+  +    L      G++  G  I
Sbjct: 69  NVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAGVWI 128

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG   + GF+   V V ++L  +Y K   I  +  VF+    R+L   N++++   H+G+
Sbjct: 129 HGACVRAGFEGHHV-VANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYAHAGH 187

Query: 396 IKDAVEMFGFMV-----DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE- 449
            +D++ +F  M      +E    DE T ++ LKA     +A  G+   +H   +  G   
Sbjct: 188 GRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGA--QVHAAMVIRGVST 245

Query: 450 -SNIAVSCSLMDAYSRCG-HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
            SN  ++ +L+D Y +C   + ++ QVF ++   N + +T+++ G+++ G  +EA+++  
Sbjct: 246 ASNAILAGALLDMYVKCRCLLPMAMQVFNRLEQKNAIQWTTVIVGHAQEGQVKEAMELFG 305

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGR 566
                G+  D      V+       +V++G+ V   ++K+  G+D      + +IDM  +
Sbjct: 306 RFWSSGVRADGHVLSSVVGVFADFALVEQGRQVHCYTVKTPAGLDVSVA--NSLIDMYHK 363

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            G+ D+A    ++ P   + + W++++     HG+
Sbjct: 364 CGLTDEAARRFREVP-ARNVVSWTAMINGLGKHGH 397



 Score =  107 bits (266), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 69/235 (29%), Positives = 119/235 (50%), Gaps = 9/235 (3%)

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
             + L  ++ +  ++ G Q+HG + KLGF   ++ + + L DMY KC  +  +  VF   
Sbjct: 7   IADMLRASAASSAIHGGAQLHGALLKLGFGSDTM-LGNNLIDMYAKCGELRMAGEVFGGM 65

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLG 434
           P R++    +LM   L  G+ ++ + + G M     +  +E TLS +LKA  V      G
Sbjct: 66  PERNVVSWTALMVGFLRHGDARECLRLLGAMRSLSDVAPNEFTLSASLKACGVVGDMAAG 125

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS 494
               +H   +++GFE +  V+ SL+  YS+ G I  + +VF+     N+V + ++++GY+
Sbjct: 126 V--WIHGACVRAGFEGHHVVANSLVLLYSKGGRIGDARRVFDGTVFRNLVTWNAMISGYA 183

Query: 495 RNGMGREALDMLEVMIQR-----GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
             G GR++L +   M QR        PD+ TF  +L  C   G  +EG  V  +M
Sbjct: 184 HAGHGRDSLLVFREMQQRRQEEEDHQPDEFTFASLLKACGSLGAAREGAQVHAAM 238



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 44/159 (27%), Positives = 79/159 (49%), Gaps = 13/159 (8%)

Query: 35  YCQPNPQ-LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           Y    P  L++  +N  ID + K G  + A + F E+PAR++V++  +I+G GK  H ++
Sbjct: 341 YTVKTPAGLDVSVANSLIDMYHKCGLTDEAARRFREVPARNVVSWTAMINGLGKHGHGQE 400

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG----- 148
           A+++++EM + G++     + ++LS CS++G   E     CR        +  +      
Sbjct: 401 AIHMFEEMRAEGVEPDEVAYLALLSACSHSGLVEE-----CRRYFSAIRHDRRLRPRAEH 455

Query: 149 -SPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
            + +VDL  R G    A DL   +P    +  W  +L A
Sbjct: 456 YACMVDLLGRAGELSEAKDLVATMPMAPTVGVWQTLLSA 494


>gi|297816638|ref|XP_002876202.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297322040|gb|EFH52461.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 769

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 179/661 (27%), Positives = 336/661 (50%), Gaps = 15/661 (2%)

Query: 9   RVRTITTLAPTCTSIVPLSSSL-----LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           R+RT  +L   C+S   L+        +L+S C+ +  LN    N  +  + K G L  A
Sbjct: 63  RLRTYISLICACSSSRSLAQGRKIHDHILNSNCKYDTILN----NHILSMYGKCGSLRDA 118

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +++FD MP R++V+Y  +I+G  +     +A+ LY +M+   +      F S++  C+ A
Sbjct: 119 REVFDFMPERNLVSYTSVITGYSQNGQEAEAITLYLKMLQADLVPDQFAFGSIIKACACA 178

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
           G    G Q+H +V+ L    +L   + L+ +Y+R      A  +F  +P ++L +W+ ++
Sbjct: 179 GDVVLGKQLHAQVIKLESSSHLIAQNALIAMYVRFNQMSDASKVFYGIPAKDLISWSSII 238

Query: 184 RAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
             F +L    E L    +M + GV  PN   F   ++ CS  +  D G Q+H   IKL  
Sbjct: 239 AGFSQLGFEFEALSHLKEMLSFGVFHPNEYIFGSSLKACSSLLRPDYGSQIHGLCIKLEL 298

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
              N     +L D Y+ CG L  A++ F+ I   D  SWN I++  A+     +A+ +F 
Sbjct: 299 TG-NAIAGCSLCDMYARCGFLDSARRVFNQIERPDTASWNVIIAGLANNGYADEAVSVFS 357

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M+     P   S    L   ++   +  G QIH ++ K GF    + V ++L  MY  C
Sbjct: 358 EMRNSGFIPDAISLRSLLCAQTKPMALCQGMQIHSFIIKCGF-LADLSVCNSLLTMYTFC 416

Query: 363 NVIESSVAVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           + +     +FE    ++     N+++T+ L      + + +F  M+      D +T+   
Sbjct: 417 SDLYCCFNLFEDFRNKADSVSWNAILTACLQHEQPVEMLRLFKLMLVSECEPDHITMGNL 476

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L+     +S  LGS   +HC + K+G      +   L+D Y++CG +  + ++F+ + + 
Sbjct: 477 LRGCVEISSLKLGS--QVHCYSWKTGLVLEQFIKNGLIDMYAKCGSLRQARRIFDSMDNG 534

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +VV +++++ GY+++G G EAL +   M   G+ P+ VTF+ VL  C+H G+V+EG  ++
Sbjct: 535 DVVSWSTLIVGYAQSGFGEEALILFREMKSSGIEPNHVTFVGVLTACSHVGLVEEGLKLY 594

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
             M++ +GI   ++H SC++D+L RAG L++AE  + +     D ++W +LL +C+  GN
Sbjct: 595 AIMQTEHGISPTKEHCSCVVDLLARAGHLNEAERFIDEMKLEPDVVVWKTLLSACKTQGN 654

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             + ++ A  +++++P +   +  + + ++  G +E +  +R +     + +  G S I+
Sbjct: 655 VDLAQKAAENILKIDPFNSTAHVLLCSMHASSGNWEDAALLRSSMKKHDVKKIPGQSWID 714

Query: 662 V 662
           V
Sbjct: 715 V 715


>gi|224121686|ref|XP_002318647.1| predicted protein [Populus trichocarpa]
 gi|222859320|gb|EEE96867.1| predicted protein [Populus trichocarpa]
          Length = 744

 Score =  276 bits (705), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 192/636 (30%), Positives = 313/636 (49%), Gaps = 20/636 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I+  N  +  + K G   +A  +F+ M  RD V++N +ISG  +     ++L ++  MV
Sbjct: 73  DIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGDYVKSLVMFRRMV 132

Query: 103 SHGIKESASTFS------SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
               KE   ++       + LS C++    T G++IH  ++  G   + ++ S L+++YM
Sbjct: 133 ----KECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKGVDSDEFLVSALIEMYM 188

Query: 157 RMGPSVRALDLFD-----ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           + G    A ++F+     EL  RN+A WN+M+  +         L ++ +M   G+ P+ 
Sbjct: 189 KCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEMLELGISPDS 248

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            +   ++  CS  + L  GKQ+H  ++ LG +D ++ V  AL++ Y  CG    + + F 
Sbjct: 249 STVVVVLVLCSQLLDLAVGKQIHGLILGLG-LDDDVRVGTALMEMYFKCGDPETSLQIFK 307

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
                +++ W S++   A      +ALE F    L    P     +  L   S       
Sbjct: 308 RSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFPDPVILLAALRACSFLSLKPR 367

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G  IHG+  K+GFD   V V  AL D YGKC  +E +  VF     R L   N+L++   
Sbjct: 368 GMAIHGFAIKMGFD-SDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDLVSWNALISGFA 426

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            +    +A++ F  M  + I  + VT++  L   +  +   L  C+ +HC  ++  FE+N
Sbjct: 427 QNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMIL--CKEVHCYLLRHWFETN 484

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             V+ SL+ AY++CG I  S  VFEK+P  N V + SI+ G+  +G   E     E M +
Sbjct: 485 ALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKE 544

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
             + PD  TF  +L+ C+HSG V  G   FNSM   Y ++   + Y+CM+D+LGRAG L+
Sbjct: 545 ANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEPRVEQYTCMVDLLGRAGNLN 604

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +A +L+   P   D  +W SLL SC+ HGN  +   VAN + EL+         ++N Y 
Sbjct: 605 QAYDLIMSMPCSPDDRIWGSLLASCKNHGNTKLAEVVANHIFELDASSVGYRVLLANLYE 664

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           + G      ++R       L +  G S IEV NS H
Sbjct: 665 DSGNLNEVFRVRTDIKQMGLKKQPGCSWIEVDNSIH 700



 Score =  195 bits (496), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 162/590 (27%), Positives = 279/590 (47%), Gaps = 52/590 (8%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY--TEGIQ 131
           D+   N +I  C +    + A+ +Y + +  G       F   L + +  G Y   +G Q
Sbjct: 2   DVSKVNRMIKECTEDGFFEDAIRVYLDFIECGFPVEEFRFFPCL-IKAFGGLYDVNKGKQ 60

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH  +L  GF  ++++ + L+ +Y + G    A+D+F+ + ER+  +WN M+  FC+   
Sbjct: 61  IHGHLLKFGFLQDIFVKNSLLGMYWKCGAGGNAVDMFERMEERDSVSWNTMISGFCQSGD 120

Query: 192 PDEVLRMYNKMKAE--GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
             + L M+ +M  E  G   N ++    +  C+    L  G ++H  ++K G VD + F+
Sbjct: 121 YVKSLVMFRRMVKECGGSYHNRVACLAALSSCASIKCLTHGLEIHGFLVKKG-VDSDEFL 179

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVIS-----WNSIVSIYADYDLIFDALELFFRM 304
            +AL++ Y  CG +  A+  F+ I  ++++      WN ++  Y   + +  ALELF  M
Sbjct: 180 VSALIEMYMKCGDIKNAENVFERIRDNELVGRNMAVWNVMILGYVSNECLSLALELFVEM 239

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P   + V  L   S+  ++  GKQIHG +  LG D   V V +AL +MY KC  
Sbjct: 240 LELGISPDSSTVVVVLVLCSQLLDLAVGKQIHGLILGLGLDD-DVRVGTALMEMYFKCGD 298

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG-FMVDEGIGLDEVTLSTTLK 423
            E+S+ +F+ +   +L    S+M +   +G   +A+E F  FM+D G   D V L   L+
Sbjct: 299 PETSLQIFKRSQNHNLVMWGSVMLNCAQNGYPNEALEFFSEFMLDCGFP-DPVILLAALR 357

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A S  +    G    +H  AIK GF+S++ V  +L+D Y +CG +E + QVF  + + ++
Sbjct: 358 ACSFLSLKPRGMA--IHGFAIKMGFDSDVFVGGALVDFYGKCGDMEYAQQVFYGLSTRDL 415

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV--------- 534
           V + ++++G+++N    EAL     M  + + P+ VT  C+L+ C H  ++         
Sbjct: 416 VSWNALISGFAQNKCADEALKAFRDMQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCY 475

Query: 535 ------KEGQLVFNSMKSVYG----IDADRQHYSCM--------------IDMLGRAGIL 570
                 +   LV NS+ S Y     I + R  +  +                M GR   +
Sbjct: 476 LLRHWFETNALVNNSLISAYAKCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEM 535

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME---LEP 617
               E +++     D   ++SLL SC   G    G +  N +ME   LEP
Sbjct: 536 FATFEKMKEANIKPDHGTFTSLLSSCSHSGKVDAGWKYFNSMMEDYNLEP 585



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 47/179 (26%), Positives = 87/179 (48%), Gaps = 12/179 (6%)

Query: 1   MLSTKLLPRVRTITTLAPTCT--SIVPLSSSL---LLDSYCQPNPQLNIYSSNRTIDDFV 55
           M S ++ P   T+  +   CT  S++ L   +   LL  + + N  +N    N  I  + 
Sbjct: 441 MQSKQIKPNTVTMACILSVCTHLSVMILCKEVHCYLLRHWFETNALVN----NSLISAYA 496

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K G ++S++ +F+++P R+ VT+N ++ G G      +    +++M    IK    TF+S
Sbjct: 497 KCGDIHSSRTVFEKLPVRNEVTWNSILLGFGMHGRTDEMFATFEKMKEANIKPDHGTFTS 556

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELP 172
           +LS CS++G    G +    ++   + L   +   + +VDL  R G   +A DL   +P
Sbjct: 557 LLSSCSHSGKVDAGWKYFNSMME-DYNLEPRVEQYTCMVDLLGRAGNLNQAYDLIMSMP 614


>gi|449442687|ref|XP_004139112.1| PREDICTED: pentatricopeptide repeat-containing protein At2g22410,
           mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 170/585 (29%), Positives = 307/585 (52%), Gaps = 45/585 (7%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL--- 171
           S+L  C++     E   IH +++S G   + +  S LV          R LD  D++   
Sbjct: 59  SLLEACTSMAKMKE---IHAQMISTGLISDGFALSRLVAFCAI--SEWRNLDYCDKILNN 113

Query: 172 -PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGMLLDE 229
               N+ +WN+ +R + E   P   + +Y  M  +G   P+  ++  + + C+   L   
Sbjct: 114 AANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWT 173

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
             ++  HVI+LG+ D ++FV NA++    +CG L+ A+K FD   V D++SWNSI++ Y 
Sbjct: 174 ANEILGHVIQLGF-DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYV 232

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
              L  +A +L+++M      P   + +  ++ +++  N+  G+++H  + ++G +  +V
Sbjct: 233 RCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNL-TV 291

Query: 350 HVQSALTDMYGKCN-------------------------------VIESSVAVFESAPGR 378
            + +AL DMY KC                                ++ES+V +F   P +
Sbjct: 292 PLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEK 351

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
            +   N+L+   + +   K+A+ +F  M    +  D++T+   L A S   + ++G    
Sbjct: 352 DVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI--W 409

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +H    K     N+A+  +L+D Y++CG+I+ + QVFE++P  N + +T+I+ G + +G 
Sbjct: 410 MHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQ 469

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
              A+     MI  GL+PD++TF+ VL+ C H G+V +G+  F  M S YGI    +HYS
Sbjct: 470 PHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYS 529

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           C++D+LGRAG L++AEEL++  P   D ++W +L    R+HGN  +G R A+ L+EL+P 
Sbjct: 530 CLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPH 589

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           D  +Y  ++N Y +   +E + ++R+    R + +  G S IE+N
Sbjct: 590 DGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 215/487 (44%), Gaps = 40/487 (8%)

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK-ESASTFSSVL 117
           +L+   K+ +     ++ ++N+ I G  +  +P  A+ LY  M+  G       T+  + 
Sbjct: 103 NLDYCDKILNNAANLNVFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLF 162

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
            VC+         +I   V+ LGF  +L++ + ++ + +  G  + A  LFDE   R+L 
Sbjct: 163 KVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLV 222

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN ++  +      DE   +Y KM    V P+ ++   +V   +    L  G++LH  +
Sbjct: 223 SWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSI 282

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI--- 294
            ++G +++ + +ANAL+D Y  C ++  AK  F+ +    V+SW ++V  YA + L+   
Sbjct: 283 EEMG-LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESA 341

Query: 295 ----------------------------FDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
                                        +AL LF  MQ     P   + V  L+  S+ 
Sbjct: 342 VRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQL 401

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G +  G  +H YV K      +V + +AL DMY KC  I+ ++ VFE  PGR+     ++
Sbjct: 402 GALDVGIWMHHYVDKHNLTM-NVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAI 460

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +  L   G    A+  F  M+  G+  DE+T    L A       + G        + K 
Sbjct: 461 ICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS-KY 519

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MG-RE 501
           G    +     L+D   R G +E + ++   +P  P+ V + ++  G   +G   MG R 
Sbjct: 520 GISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERA 579

Query: 502 ALDMLEV 508
           A  +LE+
Sbjct: 580 ASKLLEL 586



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 176/393 (44%), Gaps = 57/393 (14%)

Query: 24  VPLSSSLLLDSY--CQPNPQLNIYSSNRT----------IDDFVKSGHLNSAKKLFDEMP 71
           VPL+++L+ D Y  C+      I   N T          +  + K G L SA +LF+EMP
Sbjct: 291 VPLANALM-DMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMP 349

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            +D+V +N LI G  + +  K+AL L+ EM +  +     T  + LS CS  G    GI 
Sbjct: 350 EKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIW 409

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H  V      +N+ +G+ LVD+Y + G   +A+ +F+E+P RN  TW  ++       +
Sbjct: 410 MHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQ 469

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
           P   +  +++M + G+ P+ ++F  ++  C  G L+D+G+     +     +   +   +
Sbjct: 470 PHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYS 529

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            LVD     G L EA++    +P + D + W +                           
Sbjct: 530 CLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGA--------------------------- 562

Query: 311 PSIRSFVEFLNFASRT-GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
                    L F SR  GNV+ G++    + +L    G ++V   L +MYG  N+ E + 
Sbjct: 563 ---------LFFGSRIHGNVHMGERAASKLLELDPHDGGIYV--LLANMYGDANMWEQAR 611

Query: 370 AVFESAPGRSLE----CCNSLMTSLLHSGNIKD 398
            V +    R +E    C +  M  L++   I+D
Sbjct: 612 KVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRD 644



 Score =  117 bits (294), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 165/366 (45%), Gaps = 34/366 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  I   V  G L +A+KLFDE   RD+V++N +I+G  +     +A  LY +M 
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMG 248

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM------ 156
              +     T   V+S  +       G ++H  +  +G  L + + + L+D+Y+      
Sbjct: 249 ELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIE 308

Query: 157 -------------------------RMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
                                    + G    A+ LF+E+PE+++  WN ++  F +  R
Sbjct: 309 AAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKR 368

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
             E L ++++M+A  V P+ ++    +  CS    LD G  +H +V K   + +N+ +  
Sbjct: 369 SKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHN-LTMNVALGT 427

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           ALVD Y+ CG++ +A + F+ +P  + ++W +I+   A +     A+  F  M      P
Sbjct: 428 ALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVP 487

Query: 312 SIRSFVEFLNFASRTGNVYFGKQ-IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
              +F+  L+     G V  G+   +   +K G      H  S L D+ G+   +E +  
Sbjct: 488 DEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHY-SCLVDLLGRAGFLEEAEE 546

Query: 371 VFESAP 376
           +  S P
Sbjct: 547 LIRSMP 552


>gi|413944893|gb|AFW77542.1| putative pentatricopeptide repeat family protein [Zea mays]
          Length = 829

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 189/649 (29%), Positives = 338/649 (52%), Gaps = 32/649 (4%)

Query: 27  SSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISG 84
           + SLL       N  L +YS         K   + +A+ +FD MP   RD+V++  + S 
Sbjct: 76  TGSLLETDAVVANSLLTLYS---------KCSAVAAARSVFDGMPVGLRDLVSWTAMASC 126

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC-SNAGFYTEGIQIHCRVLSLGF-G 142
             +     +AL L+ E +  G+  +A T  +    C ++  F+  G  +   V  LGF G
Sbjct: 127 LSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLGFWG 186

Query: 143 LNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM 202
            ++ +G  L+D++ + G  V    +FD L ER +  W L++  + +    DE + ++  M
Sbjct: 187 TDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFLDM 246

Query: 203 KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC-- 260
              G +P+  +   M+  C+       G+QLHS  ++LG ++ +  V+  LVD Y+    
Sbjct: 247 LENGFQPDQYTLSSMLSACTELGSFRLGQQLHSLALRLG-LESDSCVSCGLVDMYAKSHN 305

Query: 261 -GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVE 318
             SL  A++ F+ +P  +V++W +++S Y       + + + F   L    RP+  ++  
Sbjct: 306 GQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPNHITYSS 365

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L   +  G+   G+QIH +  K      +V V +AL  MY +   IE +   F+    +
Sbjct: 366 MLKACANLGDQDSGRQIHTHCVKSNLADLNV-VGNALVSMYAESGSIEEARHAFDQLYEK 424

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---S 435
           +       M S   SGN+ D         D  I   E+ +ST      +SA+A++G    
Sbjct: 425 N-------MVSF--SGNL-DGDGRSNTYQDYQIERMELGISTFTFGSLISAAASVGMLTK 474

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + LH  ++K+GF S+ A+  SL+  YSRCG++  + QVF+++   NV+ +TS+++G ++
Sbjct: 475 GQRLHALSLKAGFGSDRAIGNSLVSMYSRCGYLVDACQVFDEMNDHNVISWTSMISGLAK 534

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +G    AL++   MI  G+ P+ VT++ VL+ C+H+G+VKEG+  F  M+  +G+    +
Sbjct: 535 HGYAARALELFHDMIAAGVKPNDVTYIAVLSACSHAGLVKEGKEHFRMMQKHHGLIPRME 594

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           HY+CM+D+LGR+G+++ A + + + P   D ++W +LL +C+ H N  IG   AN +++L
Sbjct: 595 HYACMVDLLGRSGLVEDALDFINEMPCQVDALVWKTLLGACKTHNNMDIGEIAANHVIQL 654

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           EP D A Y  +SN Y+E G ++   +IR     + L ++ G S + V++
Sbjct: 655 EPQDPAPYVLLSNLYAEAGLWDQVARIRSLMRDKNLMKEKGLSWMHVDN 703



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/323 (30%), Positives = 163/323 (50%), Gaps = 18/323 (5%)

Query: 230 GKQLHSHVIKLG-WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSIVS 286
           G+ L  H+++ G  ++ +  VAN+L+  YS C ++  A+  FD +PV   D++SW ++ S
Sbjct: 66  GRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAMAS 125

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN--FASRTGNVYFGKQIHGYVTKLGF 344
             +      +AL LF         P+  +        FAS   ++  G  + G V KLGF
Sbjct: 126 CLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLA-GGAVLGLVFKLGF 184

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               V V  AL DM+ K   + +   VF+    R++     L+T    SG   +AVE+F 
Sbjct: 185 WGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERTVVVWTLLITRYAQSGYSDEAVELFL 244

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDA 461
            M++ G   D+ TLS+ L     SA   LGS RL   LH  A++ G ES+  VSC L+D 
Sbjct: 245 DMLENGFQPDQYTLSSML-----SACTELGSFRLGQQLHSLALRLGLESDSCVSCGLVDM 299

Query: 462 YSRCGHIELSH---QVFEKIPSPNVVCFTSIMNGY-SRNGMGREALDMLEVMIQRGLIPD 517
           Y++  + +  H   +VF ++P  NV+ +T++++GY  R     + + +   M+  G+ P+
Sbjct: 300 YAKSHNGQSLHNAREVFNRMPKHNVMAWTALLSGYVQRGSQDNQVMILFCKMLNEGIRPN 359

Query: 518 KVTFLCVLAGCNHSGMVKEGQLV 540
            +T+  +L  C + G    G+ +
Sbjct: 360 HITYSSMLKACANLGDQDSGRQI 382



 Score = 48.5 bits (114), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 54/232 (23%), Positives = 98/232 (42%), Gaps = 15/232 (6%)

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSI 489
           +LG     H     S  E++  V+ SL+  YS+C  +  +  VF+ +P    ++V +T++
Sbjct: 64  HLGRALQGHLLRTGSLLETDAVVANSLLTLYSKCSAVAAARSVFDGMPVGLRDLVSWTAM 123

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK-EGQLVFNSMKSVY 548
            +  SRNG   EAL +    ++ GL+P+  T       C  S +    G  V   +  + 
Sbjct: 124 ASCLSRNGAEAEALRLFGETLEEGLLPNAFTLCAATQACFASELFHLAGGAVLGLVFKLG 183

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEE----LLQQTPGGGDCMMWSSLLRSCRVHG--NE 602
               D      +IDM  + G L         L ++T      ++W+ L+      G  +E
Sbjct: 184 FWGTDVSVGCALIDMFAKNGDLVAMRRVFDGLFERT-----VVVWTLLITRYAQSGYSDE 238

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
            +   +  +    +P  + + S +S   +E+G F +  Q+   AL   L  D
Sbjct: 239 AVELFLDMLENGFQPDQYTLSSMLSAC-TELGSFRLGQQLHSLALRLGLESD 289


>gi|357167019|ref|XP_003580964.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Brachypodium distachyon]
          Length = 861

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 215/697 (30%), Positives = 353/697 (50%), Gaps = 51/697 (7%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           L P +++   L  + ++     +SL      +P P +    SN  +  + + G L++A  
Sbjct: 51  LPPAIKSAAALRDSRSTRAIHGASLRRALLHRPTPAV----SNALLTAYARCGDLDAALA 106

Query: 66  LFDEMPA--RDMVTYNLLISGCGKFRHPKQAL-YLYDEMVSHGIKESASTFSSVLSVCSN 122
           LF   P   RD V+YN LIS    FR    AL  L D +  H +  S+ T  SVL  CS+
Sbjct: 107 LFAATPPDLRDAVSYNSLISALCLFRRWGHALDALRDMLADHEV--SSFTLVSVLLACSH 164

Query: 123 AG--FYTEGIQIHCRVLSLGF---GLNLYIGSPLVDLYMRMGPSVRALDLF--DELPERN 175
                +  G + H   L  GF   G   +  + L+ +Y R+G    A  LF        +
Sbjct: 165 LADQGHRLGREAHAFALKHGFLDKGRERFPFNALLSMYARLGLVDDAQRLFFSSGAGVGD 224

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           L TWN M+    +  R +E +++   M A GV P+G++F   +  CS   LL  G+++H+
Sbjct: 225 LVTWNTMISLLVQGGRCEEAVQVLYDMVALGVRPDGVTFASALPACSRLELLGVGREVHA 284

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSIVSIYADY-D 292
            V+K   +  N FVA+ALVD Y++   +  A++ FD +P     +  WN+++  YA +  
Sbjct: 285 FVLKDDDLAANSFVASALVDMYASNEQVSHARRVFDMVPEHGRQLGMWNAMICGYAQHGG 344

Query: 293 LIFDALELFFRMQL---CRKRPSIRSFVEFLNFASRTGNVYFGKQ-IHGYVTKLGFDHGS 348
           +  +A+ELF RM+    C   PS  +    L   +R+  V+ GK+ +HGYV K       
Sbjct: 345 MDEEAIELFSRMEAEAGC--APSETTMAGVLPACARS-EVFTGKEAVHGYVVKRDMASNR 401

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF----- 403
             VQ+AL DMY +   ++ +  +F     R +   N+L+T  +  G I +A ++      
Sbjct: 402 F-VQNALMDMYARLGRMDEAHTIFAMIDLRDIVSWNTLITGCIVQGLISEAFQLVREMQL 460

Query: 404 ------GFMVDEGIGL---------DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
                 G  + EG            + +TL T L   +V A+   G  + +H  A++   
Sbjct: 461 PSSAASGETMLEGDDTSVDGQRCMPNNITLMTLLPGCAVLAAPARG--KEIHGYAVRHAL 518

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           ES++AV  +L+D Y++CG + L+  VF+++P  NV+ +  ++  Y  +G+G EAL + + 
Sbjct: 519 ESDLAVGSALVDMYAKCGCLALARAVFDRLPRRNVITWNVLIMAYGMHGLGDEALALFDR 578

Query: 509 MIQRG-LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
           M+  G   P++VTF+  LA C+HSG+V  G  +F  MK  YG +     ++C++D+LGRA
Sbjct: 579 MVANGEATPNEVTFIAALAACSHSGLVDRGLELFQGMKRDYGFEPTPYLHACVVDVLGRA 638

Query: 568 GILDKAEELLQQ-TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
           G LD+A  ++    PG      WS++L +CR+H N  +GR  A  L ELEP + + Y  +
Sbjct: 639 GRLDEAYGIISSMAPGEHQVSAWSTMLGACRLHRNVKLGRIAAERLFELEPDEASHYVLL 698

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            N YS  G +E S ++R     R + ++ G S IE++
Sbjct: 699 CNIYSAAGLWENSTEVRGMMRQRGVAKEPGCSWIELD 735


>gi|15229605|ref|NP_190543.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75183390|sp|Q9M2Y4.1|PP276_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g49740
 gi|6723419|emb|CAB66912.1| putative protein [Arabidopsis thaliana]
 gi|332645063|gb|AEE78584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 737

 Score =  276 bits (705), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 179/609 (29%), Positives = 325/609 (53%), Gaps = 20/609 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVT-YNLLISGCGKFRHPKQALYLYDEM 101
           ++YS    +    K G +  A ++FD+MP RD V  +N +I+GC +  + + ++ L+ EM
Sbjct: 122 DVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREM 181

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G++     F+++LS+C + G    G Q+H  V+  GF +   + + L+ +Y      
Sbjct: 182 HKLGVRHDKFGFATILSMC-DYGSLDFGKQVHSLVIKAGFFIASSVVNALITMYFNCQVV 240

Query: 162 VRALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
           V A  +F+E  +  R+  T+N+++       R DE L ++ KM    + P  L+F  ++ 
Sbjct: 241 VDACLVFEETDVAVRDQVTFNVVIDGLAGFKR-DESLLVFRKMLEASLRPTDLTFVSVMG 299

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS   +   G Q+H   IK G+    + V+NA +  YS+      A K F+ +   D++
Sbjct: 300 SCSCAAM---GHQVHGLAIKTGYEKYTL-VSNATMTMYSSFEDFGAAHKVFESLEEKDLV 355

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WN+++S Y    L   A+ ++ RM +   +P   +F   L   + + ++   + +   +
Sbjct: 356 TWNTMISSYNQAKLGKSAMSVYKRMHIIGVKPDEFTFGSLL---ATSLDLDVLEMVQACI 412

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G     + + +AL   Y K   IE +  +FE +  ++L   N++++   H+G   + 
Sbjct: 413 IKFGLS-SKIEISNALISAYSKNGQIEKADLLFERSLRKNLISWNAIISGFYHNGFPFEG 471

Query: 400 VEMFGFMVDEGIGL--DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +E F  +++  + +  D  TLST L     ++S  LGS    H   ++ G      +  +
Sbjct: 472 LERFSCLLESEVRILPDAYTLSTLLSICVSTSSLMLGS--QTHAYVLRHGQFKETLIGNA 529

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIP 516
           L++ YS+CG I+ S +VF ++   +VV + S+++ YSR+G G  A++  + M   G +IP
Sbjct: 530 LINMYSQCGTIQNSLEVFNQMSEKDVVSWNSLISAYSRHGEGENAVNTYKTMQDEGKVIP 589

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D  TF  VL+ C+H+G+V+EG  +FNSM   +G+  +  H+SC++D+LGRAG LD+AE L
Sbjct: 590 DAATFSAVLSACSHAGLVEEGLEIFNSMVEFHGVIRNVDHFSCLVDLLGRAGHLDEAESL 649

Query: 577 LQ--QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           ++  +   G    +W +L  +C  HG+  +G+ VA +LME E  D +VY Q+SN Y+  G
Sbjct: 650 VKISEKTIGSRVDVWWALFSACAAHGDLKLGKMVAKLLMEKEKDDPSVYVQLSNIYAGAG 709

Query: 635 EFEVSMQIR 643
            ++ + + R
Sbjct: 710 MWKEAEETR 718



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 141/559 (25%), Positives = 250/559 (44%), Gaps = 66/559 (11%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG--------------PSV------------ 162
           G Q+HC  +  G   + ++ + L+ LY R+G              P V            
Sbjct: 76  GGQVHCYAIRSGLLCHSHVSNTLLSLYERLGNLASLKKKFDEIDEPDVYSWTTLLSASFK 135

Query: 163 -----RALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
                 A ++FD++PER ++A WN M+    E    +  + ++ +M   GV  +   F  
Sbjct: 136 LGDIEYAFEVFDKMPERDDVAIWNAMITGCKESGYHETSVELFREMHKLGVRHDKFGFAT 195

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF--IP 274
           ++  C  G  LD GKQ+HS VIK G+  +   V NAL+  Y  C  +++A   F+   + 
Sbjct: 196 ILSMCDYGS-LDFGKQVHSLVIKAGFF-IASSVVNALITMYFNCQVVVDACLVFEETDVA 253

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
           V D +++N ++   A +    ++L +F +M     RP+  +FV  +   S       G Q
Sbjct: 254 VRDQVTFNVVIDGLAGFKRD-ESLLVFRKMLEASLRPTDLTFVSVMGSCSCAA---MGHQ 309

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +HG   K G++  ++ V +A   MY       ++  VFES   + L   N++++S   + 
Sbjct: 310 VHGLAIKTGYEKYTL-VSNATMTMYSSFEDFGAAHKVFESLEEKDLVTWNTMISSYNQAK 368

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             K A+ ++  M   G+  DE T  + L     + S +L    ++  C IK G  S I +
Sbjct: 369 LGKSAMSVYKRMHIIGVKPDEFTFGSLL-----ATSLDLDVLEMVQACIIKFGLSSKIEI 423

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG- 513
           S +L+ AYS+ G IE +  +FE+    N++ + +I++G+  NG   E L+    +++   
Sbjct: 424 SNALISAYSKNGQIEKADLLFERSLRKNLISWNAIISGFYHNGFPFEGLERFSCLLESEV 483

Query: 514 -LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY----GIDADRQHYSCMIDMLGRAG 568
            ++PD  T   +L+ C     V    L+  S    Y    G   +    + +I+M  + G
Sbjct: 484 RILPDAYTLSTLLSIC-----VSTSSLMLGSQTHAYVLRHGQFKETLIGNALINMYSQCG 538

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-----DFAVY 623
            +  + E+  Q     D + W+SL+ +   HG    G    N    ++       D A +
Sbjct: 539 TIQNSLEVFNQMS-EKDVVSWNSLISAYSRHGE---GENAVNTYKTMQDEGKVIPDAATF 594

Query: 624 SQVSNFYSEIGEFEVSMQI 642
           S V +  S  G  E  ++I
Sbjct: 595 SAVLSACSHAGLVEEGLEI 613


>gi|357132450|ref|XP_003567843.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Brachypodium distachyon]
          Length = 868

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 175/616 (28%), Positives = 305/616 (49%), Gaps = 5/616 (0%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +   V+ G    A K+F +MP RD+ ++N+++ G GK    ++AL LY  M+  G +
Sbjct: 133 NAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYHRMLWAGAR 192

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               TF  VL  C      T G ++H  VL  G G+ + + + LV +Y + G    A  +
Sbjct: 193 PDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFGLGVEVDVLNALVTMYAKCGDVEAARKV 252

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD +   +  +WN M+    E    +  L ++  M  + VEPN ++   +     +   L
Sbjct: 253 FDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVTVASGLLSDL 312

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           D  K++H+  +K G+   ++   N+L+  YS+ G + EA   F  +   D +SW +++S 
Sbjct: 313 DFAKEIHALAVKRGFA-TDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDAMSWTAMISG 371

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y        ALE++  M++    P   +    L   +  G +  G ++H   T  GF   
Sbjct: 372 YEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGIKLHELATSKGFIRY 431

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            V V +AL +MY K  +IE ++ VF+  P + +   +S++     +    +A+  F  M+
Sbjct: 432 IV-VANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNFEALYYFRHML 490

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            + +  + VT    L A + + S   G  + +H   ++ G  S   V  +L+D Y +CG 
Sbjct: 491 AD-VKPNSVTFIAALAACAATGSLRCG--KEIHAHVLRQGIASEGYVPNALLDLYVKCGQ 547

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
              +   F    + +VV +  ++ G+  +G G  AL     M++ G  PD+VTF+ +L G
Sbjct: 548 TGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLETGEHPDEVTFVALLCG 607

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+ +GMV +G  +F+SM   Y I  + +HY+CM+D+L R G L +    + + P   D  
Sbjct: 608 CSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTEGYNFINRMPITPDAA 667

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           +W +LL  CR+H N  +G   A I++ELEP D   +  +S+ Y++ G +    ++R+T  
Sbjct: 668 VWGALLNGCRIHRNIELGELAAKIVLELEPNDAGYHVLLSDLYADAGMWAEVSKVRKTMR 727

Query: 648 ARKLTRDIGHSLIEVN 663
            + L  D G S +EV 
Sbjct: 728 VKGLEHDYGCSWVEVK 743



 Score =  158 bits (400), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 123/474 (25%), Positives = 233/474 (49%), Gaps = 9/474 (1%)

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
           FGL L  G+ ++ + +R G +  A  +F ++PER++ +WN+M+  + +    +E L +Y+
Sbjct: 127 FGLRL--GNAMLSMLVRFGETWHAWKVFAKMPERDVFSWNVMVGGYGKAGFLEEALDLYH 184

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260
           +M   G  P+  +F  ++R C     L  G+++H+HV++ G + V + V NALV  Y+ C
Sbjct: 185 RMLWAGARPDVYTFPCVLRSCGGVPDLTMGREVHAHVLRFG-LGVEVDVLNALVTMYAKC 243

Query: 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
           G +  A+K FD + + D ISWN++++ + +       LELF  M      P++ +     
Sbjct: 244 GDVEAARKVFDGMSLTDCISWNAMIAGHFENHECEAGLELFLHMLEDEVEPNLMTITSVT 303

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
             +    ++ F K+IH    K GF    V   ++L  MY     +  +  VF     R  
Sbjct: 304 VASGLLSDLDFAKEIHALAVKRGFA-TDVAFCNSLIQMYSSLGRMGEACTVFSRMETRDA 362

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
               ++++    +G    A+E++  M    +  D+VT+++ L A +     ++G    LH
Sbjct: 363 MSWTAMISGYEKNGFPDKALEVYALMEVNNVSPDDVTVASALAACASLGRLDVGI--KLH 420

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             A   GF   I V+ +L++ Y++   IE + +VF+ +P  +V+ ++S++ G+  N    
Sbjct: 421 ELATSKGFIRYIVVANALVEMYAKSKIIEKAIEVFKYMPDKDVISWSSMIAGFCFNHKNF 480

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
           EAL     M+   + P+ VTF+  LA C  +G ++ G+ +   +    GI ++    + +
Sbjct: 481 EALYYFRHMLA-DVKPNSVTFIAALAACAATGSLRCGKEIHAHVLR-QGIASEGYVPNAL 538

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
           +D+  + G    A        G  D + W+ +L     HG+  I     N ++E
Sbjct: 539 LDLYVKCGQTGYAWAQFGAH-GTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLE 591



 Score = 63.2 bits (152), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 46/172 (26%), Positives = 79/172 (45%), Gaps = 4/172 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  N  +D +VK G    A   F     +D+V++N++++G     H   AL  ++EM+  
Sbjct: 533 YVPNALLDLYVKCGQTGYAWAQFGAHGTKDVVSWNIMLAGFVAHGHGDIALSFFNEMLET 592

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQI-HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           G      TF ++L  CS AG  ++G ++ H          NL   + +VDL  R+G    
Sbjct: 593 GEHPDEVTFVALLCGCSRAGMVSQGWELFHSMTEKYSIVPNLKHYACMVDLLSRVGRLTE 652

Query: 164 ALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
             +  + +P   + A W  +L   C + R  E+  +  K+  E +EPN   +
Sbjct: 653 GYNFINRMPITPDAAVWGALLNG-CRIHRNIELGELAAKIVLE-LEPNDAGY 702


>gi|326495056|dbj|BAJ85624.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 673

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 166/602 (27%), Positives = 295/602 (49%), Gaps = 7/602 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH--GIKESAS 111
           +   G L SA+++ DE P  D  TY + +           AL L+  M        +   
Sbjct: 65  YAALGDLASARRVLDETPRPDPYTYRVALGWHAAAGRHADALALHRGMRRRCPEAHDDVV 124

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
             S  L     +  +  G ++HC  +  G G + ++ + LVD+Y + G    A  +FD +
Sbjct: 125 LLSLALKASVRSADFRYGRRLHCNAVKAG-GADGFVMNCLVDMYAKAGDLENARKVFDRI 183

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             RN+ +W  ML    +    +E L ++N+M+ E V P+  +   ++  C++   L +G+
Sbjct: 184 LGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVLPSEYTMASVLMACTMLGSLHQGR 243

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +H  VIK G V  N F+  A++D Y  CG + +A++ FD +   D++ W +++  Y   
Sbjct: 244 WVHGSVIKHGMV-FNPFITAAVLDMYVKCGEVEDARRLFDELGFVDLVLWTTMIVGYTQN 302

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               DAL LF   +     P+  +    L+ +++  N+  G+ IH    KL      V V
Sbjct: 303 GSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNLSLGRLIHAMSVKLLVIENDV-V 361

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +AL DMY KC  +  +  +F     + +   NSL+   + +    +A+ +F  M  +G 
Sbjct: 362 MNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAGYVENDMGNEALMLFSQMRVQGS 421

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D +++   L A        +G C   H  A+K  F SN+ V+ +L++ Y++C  +  +
Sbjct: 422 SPDAISIVNALSACVCLGDLLIGKC--FHTYAVKRAFLSNVYVNTALLNLYNKCADLPSA 479

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            +VF ++   N V + +++ GY   G    ++D+L  M++  + P++V F  +L+ C+H+
Sbjct: 480 QRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKMLKDNIQPNEVVFTSILSTCSHT 539

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           GMV  G++ F+SM   + I    +HY+CM+D+L RAG L++A E +Q+ P   D  +W +
Sbjct: 540 GMVSVGKMCFDSMAQYFNITPSMKHYACMVDVLARAGNLEEALEFIQKMPMPADISIWGA 599

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
            L  C++H     G    N +M L P     Y  +SN Y+  G ++ S+ IR     R L
Sbjct: 600 FLHGCKLHSRLEFGEEAINRMMVLHPDKPDFYVLMSNLYTSYGRWDKSLAIRRLMQERGL 659

Query: 652 TR 653
            +
Sbjct: 660 VK 661



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 132/487 (27%), Positives = 245/487 (50%), Gaps = 20/487 (4%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +D + K+G L +A+K+FD +  R++V++  ++SGC +    ++ L L++EM    + 
Sbjct: 161 NCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMREERVL 220

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            S  T +SVL  C+  G   +G  +H  V+  G   N +I + ++D+Y++ G    A  L
Sbjct: 221 PSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGEVEDARRL 280

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDEL   +L  W  M+  + +   P + L +++  K   + PN ++   ++   +    L
Sbjct: 281 FDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSASAQLRNL 340

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G+ +H+  +KL  ++ N  V NALVD Y+ C +L EA   F  I   DV++WNS+++ 
Sbjct: 341 SLGRLIHAMSVKLLVIE-NDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTWNSLIAG 399

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y + D+  +AL LF +M++    P   S V  L+     G++  GK  H Y  K  F   
Sbjct: 400 YVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLLIGKCFHTYAVKRAF-LS 458

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V+V +AL ++Y KC  + S+  VF     R+     +++      G+   ++++   M+
Sbjct: 459 NVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSIDLLNKML 518

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS----LMDAYS 463
            + I  +EV  ++ L   S +   ++G       C        NI  S      ++D  +
Sbjct: 519 KDNIQPNEVVFTSILSTCSHTGMVSVGK-----MCFDSMAQYFNITPSMKHYACMVDVLA 573

Query: 464 RCGHIELSHQVFEKIPSP-NVVCFTSIMNG---YSRNGMGREALDMLEVMIQRGLIPDKV 519
           R G++E + +  +K+P P ++  + + ++G   +SR   G EA++ + V     L PDK 
Sbjct: 574 RAGNLEEALEFIQKMPMPADISIWGAFLHGCKLHSRLEFGEEAINRMMV-----LHPDKP 628

Query: 520 TFLCVLA 526
            F  +++
Sbjct: 629 DFYVLMS 635



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 113/406 (27%), Positives = 191/406 (47%), Gaps = 21/406 (5%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H R+L+ G    L   + L+  Y  +G    A  + DE P  +  T+ + L       R
Sbjct: 42  LHARLLAHGLLRALRARTKLLSCYAALGDLASARRVLDETPRPDPYTYRVALGWHAAAGR 101

Query: 192 PDEVLRMYNKMKAEGVEPN------GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
             + L ++  M+    E +       L+    VR          G++LH + +K G  D 
Sbjct: 102 HADALALHRGMRRRCPEAHDDVVLLSLALKASVRSAD----FRYGRRLHCNAVKAGGADG 157

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
             FV N LVD Y+  G L  A+K FD I   +V+SW S++S         + L LF  M+
Sbjct: 158 --FVMNCLVDMYAKAGDLENARKVFDRILGRNVVSWTSMLSGCLQNGFAEEGLALFNEMR 215

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV---HVQSALTDMYGKC 362
             R  PS  +    L   +  G+++ G+ +HG V K    HG V    + +A+ DMY KC
Sbjct: 216 EERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIK----HGMVFNPFITAAVLDMYVKC 271

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +E +  +F+      L    +++     +G+  DA+ +F       I  + VT++T L
Sbjct: 272 GEVEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVL 331

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A +   + +LG  RL+H  ++K     N  V  +L+D Y++C  +  ++ +F +I + +
Sbjct: 332 SASAQLRNLSLG--RLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKD 389

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           VV + S++ GY  N MG EAL +   M  +G  PD ++ +  L+ C
Sbjct: 390 VVTWNSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSAC 435



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 175/378 (46%), Gaps = 4/378 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M   ++LP   T+ ++   CT +  L     +  S  +     N + +   +D +VK G 
Sbjct: 214 MREERVLPSEYTMASVLMACTMLGSLHQGRWVHGSVIKHGMVFNPFITAAVLDMYVKCGE 273

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A++LFDE+   D+V +  +I G  +   P  AL L+ +     I  ++ T ++VLS 
Sbjct: 274 VEDARRLFDELGFVDLVLWTTMIVGYTQNGSPLDALLLFSDKKFVHIVPNSVTIATVLSA 333

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            +     + G  IH   + L    N  + + LVD+Y +      A  +F  +  +++ TW
Sbjct: 334 SAQLRNLSLGRLIHAMSVKLLVIENDVVMNALVDMYAKCKALSEANGIFGRISNKDVVTW 393

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIGMLLDEGKQLHSHVI 238
           N ++  + E    +E L ++++M+ +G  P+ +S    +  C  +G LL  GK  H++ +
Sbjct: 394 NSLIAGYVENDMGNEALMLFSQMRVQGSSPDAISIVNALSACVCLGDLL-IGKCFHTYAV 452

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K  ++  N++V  AL++ Y+ C  L  A++ F  +   + ++W +++  Y        ++
Sbjct: 453 KRAFLS-NVYVNTALLNLYNKCADLPSAQRVFSEMSERNSVTWGAMIGGYGMQGDSAGSI 511

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           +L  +M     +P+   F   L+  S TG V  GK     + +      S+   + + D+
Sbjct: 512 DLLNKMLKDNIQPNEVVFTSILSTCSHTGMVSVGKMCFDSMAQYFNITPSMKHYACMVDV 571

Query: 359 YGKCNVIESSVAVFESAP 376
             +   +E ++   +  P
Sbjct: 572 LARAGNLEEALEFIQKMP 589


>gi|225441321|ref|XP_002274344.1| PREDICTED: pentatricopeptide repeat-containing protein At4g18750,
           chloroplastic-like [Vitis vinifera]
          Length = 739

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 190/662 (28%), Positives = 341/662 (51%), Gaps = 27/662 (4%)

Query: 14  TTLAPTCTSIVPLS---SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           ++L  +C ++  L    +SL++ S  QP     +  +++ I  + +     SA  + +  
Sbjct: 55  SSLLHSCNNLQALKRIHASLIVSSGFQP-----LSVASKLITLYSQLNDFRSAFSICNSF 109

Query: 71  PARDMVTYNLLISG---CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
              + V +N +I      G F +   AL  Y  M   G+   + TF  +     + G   
Sbjct: 110 EEPNTVIWNSIIKSHVDSGLFGY---ALLQYGRMRELGVAHDSFTFPIINQAIWSLGCRV 166

Query: 128 E-GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           E G  +HC  + +GFG ++Y G+ ++++Y++ G    A  LFDE+  R+L +W  ++  +
Sbjct: 167 EYGETVHCVAMKMGFGQDVYFGNTMLEVYVKCGSIGNASKLFDEMTHRDLVSWTSIISGY 226

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                     +++NKM+ E +EPN ++   M++ CS    ++EG++LHS+VIK G++ V+
Sbjct: 227 IYGESFSRGFKLFNKMRME-MEPNSVTMVVMLQACSAFESVNEGRELHSYVIKKGFM-VD 284

Query: 247 IFVANALVDFYSACG-SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
             V N+++  Y+  G S  E +  F  I   D+ISWN +++ Y+    I +  E F  M+
Sbjct: 285 RSVQNSILRMYTKTGGSGEEVETFFSEIEERDIISWNILIAFYSFRGDIAEVAERFNEMR 344

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                 SI S    ++  +   N+  G  +H    K G  H +V + + L  +Y KC  +
Sbjct: 345 R-EVTSSIESLTLVVSAIANCANLSEGGMLHCSAIKTGL-HDTV-LMTCLLALYAKCGAL 401

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           E S  +F   P R+    +S+M+    +G  K+A+E++  M+  G+  +   +ST + A 
Sbjct: 402 EISAQLFRDIPHRNSITWSSMMSGFTQNGFFKEAIELYQQMLASGLQPNHDIISTLVIAY 461

Query: 426 SVSASANLGSCRLLHCCAIKS----GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           +   +  LG  +  H   I++      E +  +  SL++ Y RCG I  +   F ++   
Sbjct: 462 THLGALQLG--KATHAFFIRNLSSWPEEDSAPLETSLLNMYIRCGSISSALICFNRVVVK 519

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +VV +TS++ G+  +G+  EAL   + M++  + P+ VTFL +L+ C+HSG+V+EG  VF
Sbjct: 520 DVVTWTSMIEGFGTHGLAFEALKFFKSMLESEVQPNSVTFLSLLSACSHSGLVREGCEVF 579

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +SMK  + I+ D  HY+CM+D+LGR+G L +A  ++ +     D  +W +LL + RVH +
Sbjct: 580 HSMKWGFRIEPDLNHYTCMVDLLGRSGKLKEALTVILKLVTCPDSRIWGALLAASRVHED 639

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           + +G   A  L+ELEP +   Y+  SN  + +  +    ++R     R L +  G S IE
Sbjct: 640 KKLGEYAAEKLLELEPDNVGYYTLWSNIEASLERWGEVEEVRRVMHERDLKKKPGWSCIE 699

Query: 662 VN 663
           V 
Sbjct: 700 VK 701


>gi|413952893|gb|AFW85542.1| hypothetical protein ZEAMMB73_270374 [Zea mays]
          Length = 716

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 181/664 (27%), Positives = 318/664 (47%), Gaps = 28/664 (4%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           +LLP   T+ +L      ++     LLL S       L+ Y++          G L SA+
Sbjct: 67  RLLPSCGTLLSLRVLHARLLTHPQGLLLGSLRARTKLLSCYAA---------LGDLASAR 117

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIKESASTF--SSVLSVCS 121
            +FD  P  D  +Y  ++    +      A+ L+ +M       E+   F  S  L  C 
Sbjct: 118 MVFDGTPRPDAYSYGAMLWCLVQTERHADAVALHHDMRRRRPCPEAQDDFVLSLALKACI 177

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
            +  Y+ G  +HC  + +G G + ++ + LVD+Y +      A  +F+ +P+RN+ +W  
Sbjct: 178 RSAEYSYGRSLHCDAIKVG-GADGFVMNSLVDMYAKAEDLECARKVFERIPDRNVVSWTS 236

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+    +     + L ++NKM+ + V P+  +   ++  CS    L +G+ +H  VIK G
Sbjct: 237 MISGCVQNGFASDGLLLFNKMRQDNVPPSEYTIATVITACSALFGLHQGRWMHGSVIKQG 296

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  N F++ AL+D Y  CG L  A+  FD +   D++ W +++  Y       DAL LF
Sbjct: 297 LMS-NSFISAALLDMYVKCGELDHARCVFDELSYIDLVLWTTMIVGYTQNGNPLDALRLF 355

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
              +     P+  +    L+ +++  ++  GK IHG   KLG    +V V +AL DMY K
Sbjct: 356 LDKRFANIAPNSVTTATVLSASAQLRDLSLGKSIHGLAVKLGLVEYNV-VGNALVDMYAK 414

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  +  +  +F     + +   NS+++    +    DA+ +F  M  +G   D +++   
Sbjct: 415 CQAVSEADRIFGRISNKDVVAWNSMISGYAENNMGDDALMLFKQMSLQGSSPDAISVVNA 474

Query: 422 LKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           L     SAS  LG     + +H  A+K  F SNI V  +L++ Y++CG +  + +VF+++
Sbjct: 475 L-----SASVCLGDLLIGKSIHGYAVKHAFVSNIYVDTALLNLYNKCGDLLSARRVFDEM 529

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              N V + +++ GY   G    ++ +   M++ G+ P+ + F  +L+ C+HSGMV  G+
Sbjct: 530 NDRNSVTWCAMIGGYGMQGDSAGSIHLFGEMLKDGVYPNDIAFTSILSTCSHSGMVTAGK 589

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F+SM   + I    +HY+CM+D+L RAG L+ A E +   P   D  +W + L  C +
Sbjct: 590 RYFDSMAQHFNITPSMKHYACMVDVLARAGNLEDALEFIDNMPMQADTSVWGAFLHGCEL 649

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR----- 653
           H            +M L P    +Y  +SN Y+  G ++ S+ IR     + L +     
Sbjct: 650 HSRLQFAEEAIKRMMVLHPERPDLYVLISNLYTSNGMWDKSLAIRRWMQEKGLVKLPGCS 709

Query: 654 DIGH 657
            +GH
Sbjct: 710 SVGH 713


>gi|297807711|ref|XP_002871739.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297317576|gb|EFH47998.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 850

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 194/669 (28%), Positives = 320/669 (47%), Gaps = 52/669 (7%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY--NLLISGCGKFRHPKQALYLYD 99
           L +  ++  I  ++  G L+ A  L    P  D   Y  N LI   G      + L  + 
Sbjct: 57  LTLNLTSHLISTYISLGCLSHAVSLLRRFPPSDAGVYHWNSLIRSYGNNGRANKCLSSFC 116

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M S        TF  V   C        G   H      GF  N+++G+ LV +Y R G
Sbjct: 117 LMHSLSWTPDNYTFPFVFKACGEISSVRCGDSSHALSRVTGFMSNVFVGNALVAMYSRCG 176

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMV 218
               A  +FDE+P  ++ +WN ++ ++ +L +P   L M++KM  E G  P+ ++   ++
Sbjct: 177 SLSDARKVFDEMPVWDVVSWNSIIESYAKLGKPKMALEMFSKMTNEFGFRPDDITLVNVL 236

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+       GKQ H   +    +  N+FV N LVD Y+  G + EA   F  +PV DV
Sbjct: 237 PPCASVGTRSLGKQFHGFAVTSEMIQ-NMFVGNCLVDMYAKFGMMDEANTVFSNMPVKDV 295

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQ-----------------------------LCRK 309
           +SWN++V+ Y+      DA+ LF +MQ                             +CR+
Sbjct: 296 VSWNAMVAGYSQIGRFEDAVRLFEQMQEEKIKMDVVTWSAAISGYAQRGLGYEALGVCRQ 355

Query: 310 ------RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD-----HGSVH-VQSALTD 357
                 +P+  + +  L+  +  G +  GK+IH Y  K   D     HG  + V + L D
Sbjct: 356 MLSSGIKPNEVTLISVLSGCASVGALMHGKEIHCYAIKYPMDLRKNGHGDENMVINQLID 415

Query: 358 MYGKCNVIESSVAVFES-APG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL-- 413
           MY KC  ++ + A+F+S +P  R +     ++      G+   A+E+   M +E      
Sbjct: 416 MYAKCKKVDIARAMFDSLSPKERDVVTWTVMIGGYSQHGDANKALELLSEMFEEDCQTRP 475

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES-NIAVSCSLMDAYSRCGHIELSH 472
           +  T+S  L A +  A+ ++G  + +H  A+++   +  + VS  L+D Y++CG I  + 
Sbjct: 476 NAFTISCALVACASLAALSIG--KQIHAYALRNQQNAVPLFVSNCLIDMYAKCGDIGDAR 533

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF+ +   N V +TS+M GY  +G G EAL + E M + G   D VT L VL  C+HSG
Sbjct: 534 LVFDNMMEKNEVTWTSLMTGYGMHGYGEEALGIFEEMRRIGFKLDGVTLLVVLYACSHSG 593

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           M+ +G   FN MK+ +G+    +HY+C++D+LGRAG L+ A  L+++ P     ++W +L
Sbjct: 594 MIDQGMEYFNRMKTDFGVSPGPEHYACLVDLLGRAGRLNAALRLIEEMPMEPPPVVWVAL 653

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L  CR+HG   +G   A  + EL   +   Y+ +SN Y+  G ++   +IR     + + 
Sbjct: 654 LSCCRIHGKVELGEYAAKKITELASNNDGSYTLLSNMYANAGRWKDVTRIRSLMRHKGIK 713

Query: 653 RDIGHSLIE 661
           +  G S +E
Sbjct: 714 KRPGCSWVE 722


>gi|357147965|ref|XP_003574566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Brachypodium distachyon]
          Length = 923

 Score =  275 bits (704), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 173/608 (28%), Positives = 321/608 (52%), Gaps = 12/608 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q  +  +N  I      G ++ A+KLF  M  RD V++N L+S         ++  ++ +
Sbjct: 177 QRQVSVANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSD 236

Query: 101 MVSHGI-KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           M   G+ +  A+T  S++SVC+++ + + G  +H   L  G    + + + LV++Y   G
Sbjct: 237 MRRGGLLRHDATTLCSLISVCASSDYVSYGSGVHSLCLRTGLHSYIPVVNALVNMYSSAG 296

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF  +  R+L +WN M+ ++ +     + L+   ++      P+ ++F   + 
Sbjct: 297 KLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALG 356

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS    L +G+ +H+  ++L  +  N+ V N+L+  Y  C S+ +A++ F  +P  DV+
Sbjct: 357 ACSSPGALMDGRMVHAMTLQLS-LHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVV 415

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL-NFASRTGNVYFGKQIHGY 338
           S N ++  YA  +    A+++FF M+    + +  + V  L +F S      +G  +H Y
Sbjct: 416 SCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHAY 475

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
               GF     +V ++L  MY KC  +ESS  VF+    RS+   N+++ + +  G+ ++
Sbjct: 476 TIHAGFLSDD-YVSNSLITMYAKCGDLESSNNVFQRIINRSVVSWNAMIAANVQHGHGEE 534

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           ++++F  M  +G GLD + L+  + + +  AS   G    LH   +K G  ++  V  + 
Sbjct: 535 SLKLFMDMRHDGNGLDHICLAECMSSSASLASLEEG--MQLHGLGLKCGLGNDSHVVNAA 592

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNV---VCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
           MD Y +CG ++   ++ + +P P +    C+ ++++GY+R G  +EA +  + MI  G  
Sbjct: 593 MDMYGKCGKMD---EMLKMLPDPAIRPQQCWNTLISGYARYGYFKEAEETFKHMISVGRT 649

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD VTF+ +L+ C+H+G+V +G   +NSM SV+G+    +H  C++D+LGR G   +AE+
Sbjct: 650 PDYVTFVTLLSACSHAGLVDKGIDYYNSMSSVFGVSPGIKHCVCIVDILGRLGRFAEAEK 709

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            ++  P   + ++W SLL S R H N  IGR+ A  L+EL+P D + Y  +SN Y+    
Sbjct: 710 FIEDMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKRLLELDPFDDSAYVLLSNLYATSAR 769

Query: 636 FEVSMQIR 643
           +    ++R
Sbjct: 770 WSDVDRVR 777



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/542 (26%), Positives = 267/542 (49%), Gaps = 10/542 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +N+Y     +  +    H+  A++LF EMP R++V++  L+       H ++AL  Y  M
Sbjct: 77  VNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSSNGHLEEALGYYRRM 136

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               I  +A+ F++V+S+C +      G+Q+   V+  G    + + + L+ +   +G  
Sbjct: 137 RRERIACNANAFATVVSLCGSLEDEVAGLQVFSHVIVSGLQRQVSVANSLISMLGNLGRV 196

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRG 220
             A  LF  + ER+  +WN ++  +       +  R+++ M+  G +  +  + C ++  
Sbjct: 197 HDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRRGGLLRHDATTLCSLISV 256

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    +  G  +HS  ++ G +   I V NALV+ YS+ G L +A+  F  +   D+IS
Sbjct: 257 CASSDYVSYGSGVHSLCLRTG-LHSYIPVVNALVNMYSSAGKLADAEFLFWNMSRRDLIS 315

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+++S Y       DAL+   ++    + P   +F   L   S  G +  G+ +H    
Sbjct: 316 WNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALGACSSPGALMDGRMVHAMTL 375

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           +L   H ++ V ++L  MYGKCN IE +  +F+  P   +  CN L+ S     +   A+
Sbjct: 376 QLSLHH-NLLVGNSLITMYGKCNSIEDAERIFQLMPNHDVVSCNILIGSYAVLEDGTKAM 434

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL-LHCCAIKSGFESNIAVSCSLM 459
           ++F +M    + L+ +T+   L   S ++S +L +  L LH   I +GF S+  VS SL+
Sbjct: 435 QVFFWMRRGEVKLNYITIVNILG--SFTSSNDLRNYGLPLHAYTIHAGFLSDDYVSNSLI 492

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y++CG +E S+ VF++I + +VV + +++    ++G G E+L +   M   G   D +
Sbjct: 493 TMYAKCGDLESSNNVFQRIINRSVVSWNAMIAANVQHGHGEESLKLFMDMRHDGNGLDHI 552

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
                ++       ++EG +  + +    G+  D    +  +DM G+ G +D   E+L+ 
Sbjct: 553 CLAECMSSSASLASLEEG-MQLHGLGLKCGLGNDSHVVNAAMDMYGKCGKMD---EMLKM 608

Query: 580 TP 581
            P
Sbjct: 609 LP 610



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 133/538 (24%), Positives = 250/538 (46%), Gaps = 21/538 (3%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG--- 129
           R   ++   ISGC +      A  +   M   G+  S    +S+++ C     + EG   
Sbjct: 6   RTPSSWYTAISGCVRCGRDSTAFSMLRGMRERGVPLSGFALASLVTACER---WEEGRAC 62

Query: 130 -IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
              IH      G  +N+YIG+ L+ LY      + A  LF E+PERN+ +W  ++ A   
Sbjct: 63  GAAIHALTQKAGLMVNVYIGTALLHLYGSQKHVLDAQRLFWEMPERNVVSWTALMVALSS 122

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWVDVN 246
               +E L  Y +M+ E +  N  +F  +V  C  G L DE  G Q+ SHVI  G +   
Sbjct: 123 NGHLEEALGYYRRMRRERIACNANAFATVVSLC--GSLEDEVAGLQVFSHVIVSG-LQRQ 179

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ- 305
           + VAN+L+      G + +A+K F  +   D +SWN++VS+Y+   L   +  +F  M+ 
Sbjct: 180 VSVANSLISMLGNLGRVHDAEKLFYRMEERDTVSWNALVSMYSHEGLCSKSFRVFSDMRR 239

Query: 306 --LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
             L R   +  +    ++  + +  V +G  +H    + G  H  + V +AL +MY    
Sbjct: 240 GGLLRHDAT--TLCSLISVCASSDYVSYGSGVHSLCLRTGL-HSYIPVVNALVNMYSSAG 296

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +  +  +F +   R L   N++++S + +GN  DA++  G ++    G D +T S+ L 
Sbjct: 297 KLADAEFLFWNMSRRDLISWNTMISSYVQNGNNMDALKTLGQLLHTNEGPDRMTFSSALG 356

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A   S+   L   R++H   ++     N+ V  SL+  Y +C  IE + ++F+ +P+ +V
Sbjct: 357 A--CSSPGALMDGRMVHAMTLQLSLHHNLLVGNSLITMYGKCNSIEDAERIFQLMPNHDV 414

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           V    ++  Y+    G +A+ +   M +  +  + +T + +L     S  ++   L  ++
Sbjct: 415 VSCNILIGSYAVLEDGTKAMQVFFWMRRGEVKLNYITIVNILGSFTSSNDLRNYGLPLHA 474

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
                G  +D    + +I M  + G L+ +  + Q+       + W++++ +   HG+
Sbjct: 475 YTIHAGFLSDDYVSNSLITMYAKCGDLESSNNVFQRII-NRSVVSWNAMIAANVQHGH 531


>gi|449476227|ref|XP_004154678.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g22410, mitochondrial-like [Cucumis sativus]
          Length = 681

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 170/585 (29%), Positives = 306/585 (52%), Gaps = 45/585 (7%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL--- 171
           S+L  C++     E   IH +++S G   + +  S LV          R LD  D++   
Sbjct: 59  SLLEACTSMAKMKE---IHAQMISTGLISDGFALSRLVAFCAI--SEWRNLDYCDKILNN 113

Query: 172 -PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGMLLDE 229
               N  +WN+ +R + E   P   + +Y  M  +G   P+  ++  + + C+   L   
Sbjct: 114 AANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLFKVCAGFSLSWT 173

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
             ++  HVI+LG+ D ++FV NA++    +CG L+ A+K FD   V D++SWNSI++ Y 
Sbjct: 174 ANEILGHVIQLGF-DSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYV 232

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
              L  +A +L+++M      P   + +  ++ +++  N+  G+++H  + ++G +  +V
Sbjct: 233 RCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNL-TV 291

Query: 350 HVQSALTDMYGKCN-------------------------------VIESSVAVFESAPGR 378
            + +AL DMY KC                                ++ES+V +F   P +
Sbjct: 292 PLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEK 351

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
            +   N+L+   + +   K+A+ +F  M    +  D++T+   L A S   + ++G    
Sbjct: 352 DVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGI--W 409

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +H    K     N+A+  +L+D Y++CG+I+ + QVFE++P  N + +T+I+ G + +G 
Sbjct: 410 MHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQ 469

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
              A+     MI  GL+PD++TF+ VL+ C H G+V +G+  F  M S YGI    +HYS
Sbjct: 470 PHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYS 529

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           C++D+LGRAG L++AEEL++  P   D ++W +L    R+HGN  +G R A+ L+EL+P 
Sbjct: 530 CLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERAASKLLELDPH 589

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           D  +Y  ++N Y +   +E + ++R+    R + +  G S IE+N
Sbjct: 590 DGGIYVLLANMYGDANMWEQARKVRKMMEERGVEKTPGCSSIEMN 634



 Score =  143 bits (360), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 121/487 (24%), Positives = 214/487 (43%), Gaps = 40/487 (8%)

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK-ESASTFSSVL 117
           +L+   K+ +     +  ++N+ I G  +  +P  A+ LY  M+  G       T+  + 
Sbjct: 103 NLDYCDKILNNAANLNXFSWNMAIRGYVESENPINAVLLYRNMLRKGSAIPDNYTYPLLF 162

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
            VC+         +I   V+ LGF  +L++ + ++ + +  G  + A  LFDE   R+L 
Sbjct: 163 KVCAGFSLSWTANEILGHVIQLGFDSDLFVHNAIIHVLVSCGELLAARKLFDESCVRDLV 222

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN ++  +      DE   +Y KM    V P+ ++   +V   +    L  G++LH  +
Sbjct: 223 SWNSIINGYVRCGLADEAFDLYYKMGELNVMPDEVTMIGVVSASAQLENLALGRKLHQSI 282

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI--- 294
            ++G +++ + +ANAL+D Y  C ++  AK  F+ +    V+SW ++V  YA + L+   
Sbjct: 283 EEMG-LNLTVPLANALMDMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESA 341

Query: 295 ----------------------------FDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
                                        +AL LF  MQ     P   + V  L+  S+ 
Sbjct: 342 VRLFNEMPEKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQL 401

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G +  G  +H YV K      +V + +AL DMY KC  I+ ++ VFE  PGR+     ++
Sbjct: 402 GALDVGIWMHHYVDKHNLTM-NVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAI 460

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +  L   G    A+  F  M+  G+  DE+T    L A       + G        + K 
Sbjct: 461 ICGLALHGQPHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTS-KY 519

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MG-RE 501
           G    +     L+D   R G +E + ++   +P  P+ V + ++  G   +G   MG R 
Sbjct: 520 GISPKLKHYSCLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGALFFGSRIHGNVHMGERA 579

Query: 502 ALDMLEV 508
           A  +LE+
Sbjct: 580 ASKLLEL 586



 Score =  124 bits (310), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/393 (25%), Positives = 176/393 (44%), Gaps = 57/393 (14%)

Query: 24  VPLSSSLLLDSY--CQPNPQLNIYSSNRT----------IDDFVKSGHLNSAKKLFDEMP 71
           VPL+++L+ D Y  C+      I   N T          +  + K G L SA +LF+EMP
Sbjct: 291 VPLANALM-DMYIKCKNIEAAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMP 349

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            +D+V +N LI G  + +  K+AL L+ EM +  +     T  + LS CS  G    GI 
Sbjct: 350 EKDVVLWNALIGGFVQAKRSKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIW 409

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H  V      +N+ +G+ LVD+Y + G   +A+ +F+E+P RN  TW  ++       +
Sbjct: 410 MHHYVDKHNLTMNVALGTALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQ 469

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
           P   +  +++M + G+ P+ ++F  ++  C  G L+D+G+     +     +   +   +
Sbjct: 470 PHAAISYFSEMISIGLVPDEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHYS 529

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            LVD     G L EA++    +P + D + W +                           
Sbjct: 530 CLVDLLGRAGFLEEAEELIRSMPFEPDAVVWGA--------------------------- 562

Query: 311 PSIRSFVEFLNFASRT-GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
                    L F SR  GNV+ G++    + +L    G ++V   L +MYG  N+ E + 
Sbjct: 563 ---------LFFGSRIHGNVHMGERAASKLLELDPHDGGIYV--LLANMYGDANMWEQAR 611

Query: 370 AVFESAPGRSLE----CCNSLMTSLLHSGNIKD 398
            V +    R +E    C +  M  L++   I+D
Sbjct: 612 KVRKMMEERGVEKTPGCSSIEMNGLVYDFIIRD 644



 Score =  118 bits (295), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 89/366 (24%), Positives = 165/366 (45%), Gaps = 34/366 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  I   V  G L +A+KLFDE   RD+V++N +I+G  +     +A  LY +M 
Sbjct: 189 DLFVHNAIIHVLVSCGELLAARKLFDESCVRDLVSWNSIINGYVRCGLADEAFDLYYKMG 248

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM------ 156
              +     T   V+S  +       G ++H  +  +G  L + + + L+D+Y+      
Sbjct: 249 ELNVMPDEVTMIGVVSASAQLENLALGRKLHQSIEEMGLNLTVPLANALMDMYIKCKNIE 308

Query: 157 -------------------------RMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
                                    + G    A+ LF+E+PE+++  WN ++  F +  R
Sbjct: 309 AAKILFENMTKKTVVSWTTMVIGYAKFGLLESAVRLFNEMPEKDVVLWNALIGGFVQAKR 368

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
             E L ++++M+A  V P+ ++    +  CS    LD G  +H +V K   + +N+ +  
Sbjct: 369 SKEALALFHEMQASSVAPDKITVVNCLSACSQLGALDVGIWMHHYVDKHN-LTMNVALGT 427

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           ALVD Y+ CG++ +A + F+ +P  + ++W +I+   A +     A+  F  M      P
Sbjct: 428 ALVDMYAKCGNIKKAIQVFEEMPGRNSLTWTAIICGLALHGQPHAAISYFSEMISIGLVP 487

Query: 312 SIRSFVEFLNFASRTGNVYFGKQ-IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
              +F+  L+     G V  G+   +   +K G      H  S L D+ G+   +E +  
Sbjct: 488 DEITFIGVLSACCHGGLVDQGRDYFYQMTSKYGISPKLKHY-SCLVDLLGRAGFLEEAEE 546

Query: 371 VFESAP 376
           +  S P
Sbjct: 547 LIRSMP 552


>gi|224145066|ref|XP_002325515.1| predicted protein [Populus trichocarpa]
 gi|222862390|gb|EEE99896.1| predicted protein [Populus trichocarpa]
          Length = 683

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 173/587 (29%), Positives = 295/587 (50%), Gaps = 57/587 (9%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL------ 165
           + SS+L  C+N     +G Q+H   +SLGF  +L +   LV  Y        A       
Sbjct: 43  SISSLLYSCTNLKSLPQGKQLHAHTISLGFENHLVLVPKLVTFYSSFSLLADAHTITVNS 102

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           D+ + LP      WNL++ ++       E L  Y +M  +GV P+  ++  +++ C   +
Sbjct: 103 DIVNPLP------WNLLISSYVNNGLHGEALSAYREMVHKGVRPDNFTYPSVLKACGEKL 156

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            LD G+++H  +        N++V N+LV  Y   G L  A++ F+ +P  D +SWN I+
Sbjct: 157 DLDFGREVHESINAAYGHRWNLYVHNSLVSMYGKFGELDAARRLFNQMPERDAVSWNGII 216

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSF-------VEFLNFA--------------- 323
           S YA   L  +A ELF  M+L     +I ++       V+  NF                
Sbjct: 217 SNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGALELLSQMRRCDID 276

Query: 324 -------------SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
                        S  G +  G  IH    +  FD G  +V++AL  MY +C  +  +  
Sbjct: 277 LDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFD-GFDNVRNALITMYSRCKDLRHADI 335

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F+S   +SL   NS+++   H    ++A  +F  M+  GI  + VT+++ L     +  
Sbjct: 336 LFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIASILP--HCARV 393

Query: 431 ANLGSCRLLHCCAIK-SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           ANL   +  HC  ++  GFE  + +  SL++ Y+R G +  + +VF+ +   + V +TS+
Sbjct: 394 ANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRRRDKVTYTSL 453

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + GY   G G+ AL + + MI+  + PD+VT + VL+ C+HSG+V EG ++F  M ++YG
Sbjct: 454 IAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVLFEKMSTLYG 513

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
           I    +H+SCM+D+ GRAG+L+KA++++   P      MW++L+ +CR+HGN  IG   A
Sbjct: 514 IVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYRPTTAMWATLVGACRIHGNTEIGEWAA 573

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
             L+E++P +   Y  ++N ++  G +       + A  R   RD+G
Sbjct: 574 EKLLEMKPENPGYYVLIANMHAAAGRWS------KLAEVRTYMRDLG 614



 Score =  119 bits (299), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 160/343 (46%), Gaps = 4/343 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM----PARDMVTYNLLISGCGKFRHPKQAL 95
           P+ +  S N  I ++   G    A +LF+EM       +++T+N +  GC + R+ K AL
Sbjct: 205 PERDAVSWNGIISNYASRGLWKEAFELFEEMRLAGAEVNIITWNTIAGGCVQTRNFKGAL 264

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            L  +M    I          L  CS+ G    G  IH   +   F     + + L+ +Y
Sbjct: 265 ELLSQMRRCDIDLDPVAMIIGLGACSHIGAIKLGTVIHASAIRSCFDGFDNVRNALITMY 324

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            R      A  LF  +  ++L TWN ML  +  + R +E   ++ +M   G+EPN ++  
Sbjct: 325 SRCKDLRHADILFKSIKTKSLTTWNSMLSGYTHMDRSEEASFLFREMLFSGIEPNYVTIA 384

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  C+    L +GK+ H ++++    +  + + N+LV+ Y+  G ++ AK+ FD +  
Sbjct: 385 SILPHCARVANLQQGKEFHCYIMRREGFEDYLLLWNSLVEMYARSGKVLSAKRVFDSLRR 444

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +++ S+++ Y        AL+LF  M   R +P   + V  L+  S +G V  G  +
Sbjct: 445 RDKVTYTSLIAGYGIQGEGKTALKLFDEMIKHRIKPDQVTMVAVLSACSHSGLVTEGNVL 504

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
              ++ L     +V   S + D++G+  ++  +  V  S P R
Sbjct: 505 FEKMSTLYGIVPAVEHFSCMVDLFGRAGLLNKAKKVITSMPYR 547


>gi|15223099|ref|NP_172286.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174869|sp|Q9LN01.1|PPR21_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g08070
 gi|8778839|gb|AAF79838.1|AC026875_18 T6D22.15 [Arabidopsis thaliana]
 gi|332190118|gb|AEE28239.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 741

 Score =  275 bits (704), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 169/570 (29%), Positives = 301/570 (52%), Gaps = 42/570 (7%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR----ALDLFDELPERNLATWNLMLRAFC 187
           IH +++ +G     Y  S L++  + + P       A+ +F  + E NL  WN M R   
Sbjct: 52  IHAQMIKIGLHNTNYALSKLIEFCI-LSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHA 110

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             S P   L++Y  M + G+ PN  +F ++++ C+      EG+Q+H HV+KLG  D+++
Sbjct: 111 LSSDPVSALKLYVCMISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLG-CDLDL 169

Query: 248 FVANALVDFYSACGSL------------------------------IE-AKKSFDFIPVD 276
           +V  +L+  Y   G L                              IE A+K FD IPV 
Sbjct: 170 YVHTSLISMYVQNGRLEDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK 229

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWN+++S YA+     +ALELF  M     RP   + V  ++  +++G++  G+Q+H
Sbjct: 230 DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 289

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            ++   GF   ++ + +AL D+Y KC  +E++  +FE  P + +   N+L+    H    
Sbjct: 290 LWIDDHGFG-SNLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLY 348

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNIAV 454
           K+A+ +F  M+  G   ++VT+ + L A +   + ++G  R +H    K   G  +  ++
Sbjct: 349 KEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIG--RWIHVYIDKRLKGVTNASSL 406

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++CG IE +HQVF  I   ++  + +++ G++ +G    + D+   M + G+
Sbjct: 407 RTSLIDMYAKCGDIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGI 466

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD +TF+ +L+ C+HSGM+  G+ +F +M   Y +    +HY CMID+LG +G+  +AE
Sbjct: 467 QPDDITFVGLLSACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAE 526

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E++       D ++W SLL++C++HGN  +G   A  L+++EP +   Y  +SN Y+  G
Sbjct: 527 EMINMMEMEPDGVIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAG 586

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +    + R     + + +  G S IE++S
Sbjct: 587 RWNEVAKTRALLNDKGMKKVPGCSSIEIDS 616



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 165/616 (26%), Positives = 268/616 (43%), Gaps = 102/616 (16%)

Query: 45  YSSNRTIDDFVKSGH---LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ I+  + S H   L  A  +F  +   +++ +N +  G      P  AL LY  M
Sbjct: 66  YALSKLIEFCILSPHFEGLPYAISVFKTIQEPNLLIWNTMFRGHALSSDPVSALKLYVCM 125

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP- 160
           +S G+  ++ TF  VL  C+ +  + EG QIH  VL LG  L+LY+ + L+ +Y++ G  
Sbjct: 126 ISLGLLPNSYTFPFVLKSCAKSKAFKEGQQIHGHVLKLGCDLDLYVHTSLISMYVQNGRL 185

Query: 161 ----------------SVRAL--------------DLFDELPERNLATWNLMLRAFCELS 190
                           S  AL               LFDE+P +++ +WN M+  + E  
Sbjct: 186 EDAHKVFDKSPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETG 245

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----V 245
              E L ++  M    V P+  +   +V  C+    ++ G+Q+H       W+D      
Sbjct: 246 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL------WIDDHGFGS 299

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N+ + NAL+D YS CG L  A   F+ +P  DVISWN+++  Y   +L  +AL LF  M 
Sbjct: 300 NLKIVNALIDLYSKCGELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEML 359

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCN 363
              + P+  + +  L   +  G +  G+ IH Y+ K   G  + S  ++++L DMY KC 
Sbjct: 360 RSGETPNDVTMLSILPACAHLGAIDIGRWIHVYIDKRLKGVTNASS-LRTSLIDMYAKCG 418

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            IE++  VF S   +SL   N+++      G    + ++F  M   GI  D++T    L 
Sbjct: 419 DIEAAHQVFNSILHKSLSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLS 478

Query: 424 ALSVSASANLG-------------SCRLLHC-CAI----KSGF-------------ESNI 452
           A S S   +LG             + +L H  C I     SG              E + 
Sbjct: 479 ACSHSGMLDLGRHIFRTMTQDYKMTPKLEHYGCMIDLLGHSGLFKEAEEMINMMEMEPDG 538

Query: 453 AVSCSLMDAYSRCGHIELSHQVFE---KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            + CSL+ A    G++EL     E   KI   N   +  + N Y+  G         EV 
Sbjct: 539 VIWCSLLKACKMHGNVELGESFAENLIKIEPENPGSYVLLSNIYASAGRWN------EVA 592

Query: 510 IQRGLIPDKVTFLCVLAGCNH---SGMVKE---GQLVFNSMKSVYGIDADRQHYSCMIDM 563
             R L+ DK   +  + GC+      +V E   G       + +YG+  +      M  +
Sbjct: 593 KTRALLNDKG--MKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEE------MEVL 644

Query: 564 LGRAGILDKAEELLQQ 579
           L +AG +    E+LQ+
Sbjct: 645 LEKAGFVPDTSEVLQE 660



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 87/304 (28%), Positives = 165/304 (54%), Gaps = 1/304 (0%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P  ++ S    I  +   G++ +A+KLFDE+P +D+V++N +ISG  +  + K+AL L+
Sbjct: 195 SPHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELF 254

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            +M+   ++   ST  +V+S C+ +G    G Q+H  +   GFG NL I + L+DLY + 
Sbjct: 255 KDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKC 314

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LF+ LP +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++
Sbjct: 315 GELETACGLFERLPYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSIL 374

Query: 219 RGCSIGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
             C+    +D G+ +H ++ K L  V     +  +L+D Y+ CG +  A + F+ I    
Sbjct: 375 PACAHLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAHQVFNSILHKS 434

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           + SWN+++  +A +     + +LF RM+    +P   +FV  L+  S +G +  G+ I  
Sbjct: 435 LSSWNAMIFGFAMHGRADASFDLFSRMRKIGIQPDDITFVGLLSACSHSGMLDLGRHIFR 494

Query: 338 YVTK 341
            +T+
Sbjct: 495 TMTQ 498


>gi|302821737|ref|XP_002992530.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
 gi|300139732|gb|EFJ06468.1| hypothetical protein SELMODRAFT_135370 [Selaginella moellendorffii]
          Length = 849

 Score =  275 bits (703), Expect = 5e-71,   Method: Compositional matrix adjust.
 Identities = 170/622 (27%), Positives = 324/622 (52%), Gaps = 13/622 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ++ + K G +  A+ +F  +   ++ ++ +L++   +  H K  L L  +M   G+ 
Sbjct: 120 NCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVW 179

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALD 166
            +A T ++V+   S  G + E  +IH R  +      ++ + + L+D+Y + G    A  
Sbjct: 180 PNAVTLATVIGAVSELGDWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEV 239

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD+   ++LA  N M+ A+ +L    + +  +N+++  G++PN +++  + R C+   +
Sbjct: 240 VFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGV 299

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
             + +  H   I L  +  ++ V  ALV  YS CGSL +A++ FD +P  +V++WN +++
Sbjct: 300 YSDARVAHMCFI-LSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIA 358

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA      +AL+L+  M+     P   +FV  L   S   ++  G+ IH +V   G+D 
Sbjct: 359 GYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYD- 417

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESA--PGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
            S+ V SAL  MY  C  +  +V VF        S+    +++T+L  +G  + A+ +F 
Sbjct: 418 SSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFR 477

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC---AIKSGFESNIAVSCSLMDA 461
            M  EG+  + VT  +T+ A S     ++G+    H      I +G+  ++ +  SL++ 
Sbjct: 478 KMDLEGVKANVVTFVSTIDACS-----SIGALVEGHAIFERVIVTGYLIDVVLGTSLINL 532

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +CG ++ + +VF  +   N+V + +I+   S+NG    + ++L+ M   G  P+++T 
Sbjct: 533 YGKCGRLDYALEVFHHLSFKNIVTWNTILAASSQNGEETLSAELLQEMDLDGAQPNEMTL 592

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L +L GC+H+G+V +    F SM   + +    +HY C++D+LGR+G L++ E  +   P
Sbjct: 593 LNMLFGCSHNGLVAKAVSYFRSMVYGHCLVPTSEHYGCLVDLLGRSGQLEEVEAFISSKP 652

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D ++W SLL SC +H +   G R A  ++ L+P + + Y  +SN ++ IG  +    
Sbjct: 653 FSLDSVLWMSLLGSCVIHSDVERGLRAARRVLGLDPKNASPYVLLSNMFAAIGMLDAVKS 712

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           + + A  R + ++   S IEVN
Sbjct: 713 LAKLAGERAMKKEQSRSYIEVN 734



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 56/276 (20%), Positives = 128/276 (46%), Gaps = 5/276 (1%)

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
           +++   + G+V   K I  +++      G   + + + + YGKC  ++ +  VF S    
Sbjct: 86  YVSLLKQAGDVTALKTIQAHISHSKRFSGDRLLLNCVVEAYGKCGCVKDARLVFSSIRHP 145

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           ++     L+ +   +G+ K  +E+   M   G+  + VTL+T + A  VS   +    R 
Sbjct: 146 NVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGA--VSELGDWDEARK 203

Query: 439 LHC-CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           +H   A       ++ +  +L+D Y++CG I  +  VF++  + ++ C  ++++ Y + G
Sbjct: 204 IHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAYIQLG 263

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
              +A+     +   GL P++VT+  +   C  +G+  + ++       +  +  D    
Sbjct: 264 YTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCF-ILSKLRPDVVVN 322

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           + ++ M  R G L+ A  +  + P G + + W+ ++
Sbjct: 323 TALVSMYSRCGSLEDARRVFDRMP-GKNVVTWNVMI 357


>gi|15218851|ref|NP_171853.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75180299|sp|Q9LR69.1|PPR8_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At1g03540
 gi|9280645|gb|AAF86514.1|AC002560_7 F21B7.16 [Arabidopsis thaliana]
 gi|91805735|gb|ABE65596.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|332189463|gb|AEE27584.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 609

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 166/580 (28%), Positives = 297/580 (51%), Gaps = 11/580 (1%)

Query: 87  KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY 146
           K     +A+ + +   S  I  +   ++S+L  C+    +  GIQ H  V+  G   +  
Sbjct: 38  KLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSGLETDRN 97

Query: 147 IGSPLVDLYMRMGPSVRALD-LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           +G+ L+ LY ++GP +R    +FD    ++  +W  M+  +       + L ++ +M + 
Sbjct: 98  VGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSF 157

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G++ N  +    V+ CS    +  G+  H  VI  G+ + N F+++ L   Y      ++
Sbjct: 158 GLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGF-EWNHFISSTLAYLYGVNREPVD 216

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR-PSIRSFVEFLNFAS 324
           A++ FD +P  DVI W +++S ++  DL  +AL LF+ M   +   P   +F   L    
Sbjct: 217 ARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACG 276

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
               +  GK+IHG +   G    +V V+S+L DMYGKC  +  +  VF     ++    +
Sbjct: 277 NLRRLKQGKEIHGKLITNGIG-SNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWS 335

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           +L+     +G  + A+E+F  M ++    D     T LKA +  A+  LG  + +H   +
Sbjct: 336 ALLGGYCQNGEHEKAIEIFREMEEK----DLYCFGTVLKACAGLAAVRLG--KEIHGQYV 389

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           + G   N+ V  +L+D Y + G I+ + +V+ K+   N++ + ++++  ++NG G EA+ 
Sbjct: 390 RRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVS 449

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
               M+++G+ PD ++F+ +L  C H+GMV EG+  F  M   YGI    +HYSCMID+L
Sbjct: 450 FFNDMVKKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHYSCMIDLL 509

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN-EIIGRRVANILMELEPVDFAVY 623
           GRAG+ ++AE LL++     D  +W  LL  C  + +   +  R+A  +MELEP     Y
Sbjct: 510 GRAGLFEEAENLLERAECRNDASLWGVLLGPCAANADASRVAERIAKRMMELEPKYHMSY 569

Query: 624 SQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             +SN Y  IG    ++ IR+  + R + + +G S I+ +
Sbjct: 570 VLLSNMYKAIGRHGDALNIRKLMVRRGVAKTVGQSWIDAH 609



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 122/437 (27%), Positives = 214/437 (48%), Gaps = 14/437 (3%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +   +++FD    +D +++  ++SG    +   +AL ++ EMVS G+  +  T SS +  
Sbjct: 113 MRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEMVSFGLDANEFTLSSAVKA 172

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS  G    G   H  V++ GF  N +I S L  LY      V A  +FDE+PE ++  W
Sbjct: 173 CSELGEVRLGRCFHGVVITHGFEWNHFISSTLAYLYGVNREPVDARRVFDEMPEPDVICW 232

Query: 180 NLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
             +L AF +    +E L ++  M + +G+ P+G +F  ++  C     L +GK++H  +I
Sbjct: 233 TAVLSAFSKNDLYEEALGLFYAMHRGKGLVPDGSTFGTVLTACGNLRRLKQGKEIHGKLI 292

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
             G +  N+ V ++L+D Y  CGS+ EA++ F+ +   + +SW++++  Y        A+
Sbjct: 293 TNG-IGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKNSVSWSALLGGYCQNGEHEKAI 351

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           E+F  M+       +  F   L   +    V  GK+IHG   + G   G+V V+SAL D+
Sbjct: 352 EIFREME----EKDLYCFGTVLKACAGLAAVRLGKEIHGQYVRRGC-FGNVIVESALIDL 406

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           YGK   I+S+  V+     R++   N+++++L  +G  ++AV  F  MV +GI  D ++ 
Sbjct: 407 YGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMVKKGIKPDYISF 466

Query: 419 STTLKALSVSASANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
              L A   +   + G      +     IK G E     SC ++D   R G  E +  + 
Sbjct: 467 IAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEH---YSC-MIDLLGRAGLFEEAENLL 522

Query: 476 EKIPSPNVVCFTSIMNG 492
           E+    N      ++ G
Sbjct: 523 ERAECRNDASLWGVLLG 539



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 105/424 (24%), Positives = 190/424 (44%), Gaps = 26/424 (6%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            C+L +  E +R+ N   +  +      +  +++ C+       G Q H+HV+K G ++ 
Sbjct: 36  LCKLGQLTEAIRILNSTHSSEIPATPKLYASLLQTCNKVFSFIHGIQFHAHVVKSG-LET 94

Query: 246 NIFVANALVDFYSACG-SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           +  V N+L+  Y   G  + E ++ FD   V D ISW S++S Y        ALE+F  M
Sbjct: 95  DRNVGNSLLSLYFKLGPGMRETRRVFDGRFVKDAISWTSMMSGYVTGKEHVKALEVFVEM 154

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                  +  +    +   S  G V  G+  HG V   GF+     + S L  +YG    
Sbjct: 155 VSFGLDANEFTLSSAVKACSELGEVRLGRCFHGVVITHGFEWNHF-ISSTLAYLYGVNRE 213

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL--DEVTLSTTL 422
              +  VF+  P   + C  +++++   +   ++A+ +F + +  G GL  D  T  T L
Sbjct: 214 PVDARRVFDEMPEPDVICWTAVLSAFSKNDLYEEALGLF-YAMHRGKGLVPDGSTFGTVL 272

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A        L   + +H   I +G  SN+ V  SL+D Y +CG +  + QVF  +   N
Sbjct: 273 TA--CGNLRRLKQGKEIHGKLITNGIGSNVVVESSLLDMYGKCGSVREARQVFNGMSKKN 330

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
            V +++++ GY +NG   +A+++   M ++    D   F  VL  C     V+ G     
Sbjct: 331 SVSWSALLGGYCQNGEHEKAIEIFREMEEK----DLYCFGTVLKACAGLAAVRLG----- 381

Query: 543 SMKSVYGIDADRQHY------SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
             K ++G    R  +      S +ID+ G++G +D A  +  +     + + W+++L + 
Sbjct: 382 --KEIHGQYVRRGCFGNVIVESALIDLYGKSGCIDSASRVYSKMS-IRNMITWNAMLSAL 438

Query: 597 RVHG 600
             +G
Sbjct: 439 AQNG 442



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 40/145 (27%), Positives = 76/145 (52%), Gaps = 6/145 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+   +  ID + KSG ++SA +++ +M  R+M+T+N ++S   +    ++A+  +++MV
Sbjct: 396 NVIVESALIDLYGKSGCIDSASRVYSKMSIRNMITWNAMLSALAQNGRGEEAVSFFNDMV 455

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEG---IQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
             GIK    +F ++L+ C + G   EG     +  +   +  G   Y  S ++DL  R G
Sbjct: 456 KKGIKPDYISFIAILTACGHTGMVDEGRNYFVLMAKSYGIKPGTEHY--SCMIDLLGRAG 513

Query: 160 PSVRALDLFDELPERNLAT-WNLML 183
               A +L +    RN A+ W ++L
Sbjct: 514 LFEEAENLLERAECRNDASLWGVLL 538


>gi|225425182|ref|XP_002264325.1| PREDICTED: pentatricopeptide repeat-containing protein At2g13600
           [Vitis vinifera]
          Length = 684

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 191/635 (30%), Positives = 313/635 (49%), Gaps = 73/635 (11%)

Query: 101 MVSHGIKE-----SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
           M  HG+       ++S F+ +L  C  +        +H R+L   F + ++I + L+D+Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 156 MRMGPSVRALDLFDELPERNLATWNLML-------------RAFCELSRPD--------- 193
            +      A  LFD +P+RN  TWN ++             R F  +  PD         
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 194 ---------EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
                    E L  + KM  E    N  SF   +  C+  M L+ G Q+H+ V K  +  
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRY-S 179

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++++ +AL+D YS CGS+  A++ F  +   ++++WNS+++ Y       +ALE+F RM
Sbjct: 180 TDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRM 239

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P   +    ++  +    +  G QIH  V K       + + +AL DMY KC+ 
Sbjct: 240 MDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSK 299

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI------------- 411
           +  +  VF+    R++    S+++    + ++K A  MF  M    +             
Sbjct: 300 VNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQN 359

Query: 412 GLDEVTLS--TTLKALSV-----------SASANLGSC---RLLHCCAIKSGF------E 449
           G +E  L     LK  S+           SA ANL      R  H   +K GF      E
Sbjct: 360 GENEEALRLFRLLKRESIWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAE 419

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           S+I V  SL+D Y +CG IE   +VFEK+   + V + +I+ GY++NG G EAL +   M
Sbjct: 420 SDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKM 479

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
           +  G  PD VT + VL  C+H+G+V+EG+  F SM+  +G+   + HY+CM+D+LGRAG 
Sbjct: 480 LVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGC 538

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
           L++A+ L++  P   D ++W SLL +C+VHGN  +G+  A  L+E++P +   Y  +SN 
Sbjct: 539 LNEAKNLIEAMPVNPDAVVWGSLLAACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNM 598

Query: 630 YSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           Y+E+G +   +++R+    + +T+  G S IEV S
Sbjct: 599 YAELGRWGDVVRVRKLMRQQGVTKQPGCSWIEVES 633



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 146/580 (25%), Positives = 259/580 (44%), Gaps = 79/580 (13%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ N ++ N  I    KSG L+ A +LF  MP  D  ++N ++SG  +    +++L  + 
Sbjct: 77  PQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFV 136

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M       +  +F S LS C+       G Q+H  V    +  ++Y+GS L+D+Y + G
Sbjct: 137 KMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCG 196

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A ++F  + ERNL TWN ++  + +     E L ++ +M   G+EP+ ++   +V 
Sbjct: 197 SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVS 256

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV---- 275
            C+    L EG Q+H+ V+K      ++ + NALVD Y+ C  + EA++ FD + +    
Sbjct: 257 ACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVV 316

Query: 276 ---------------------------DDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
                                       +V+SWN++++ Y       +AL LF  ++   
Sbjct: 317 SETSMVSGYARAASVKAARFMFSKMTQRNVVSWNALIAGYTQNGENEEALRLFRLLKRES 376

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS-----VHVQSALTDMYGKCN 363
             P+  +F   L+  +   ++  G+Q H +V K GF+  S     + V ++L DMY KC 
Sbjct: 377 IWPTHYTFGNLLSACANLADLLLGRQAHTHVLKQGFEFQSGAESDIFVGNSLIDMYMKCG 436

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            IE    VFE    R     N+++     +G   +A+++F  M+  G   D VT+   L 
Sbjct: 437 SIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVL- 495

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
                       C   H   ++ G                   H   S +    IP  + 
Sbjct: 496 ------------CACSHAGLVEEG------------------RHYFFSMEEHGLIPLKD- 524

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
             +T +++   R G   EA +++E M    + PD V +  +LA C   G ++ G+   ++
Sbjct: 525 -HYTCMVDLLGRAGCLNEAKNLIEAM---PVNPDAVVWGSLLAACKVHGNIEMGK---HA 577

Query: 544 MKSVYGIDA-DRQHYSCMIDM---LGRAGILDKAEELLQQ 579
            + +  ID  +   Y  + +M   LGR G + +  +L++Q
Sbjct: 578 AEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQ 617



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/150 (27%), Positives = 70/150 (46%), Gaps = 1/150 (0%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q   + +I+  N  ID ++K G +    ++F++M  RD V++N +I G  +  +  +AL 
Sbjct: 415 QSGAESDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVGYAQNGYGAEALQ 474

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           ++ +M+  G K    T   VL  CS+AG   EG      +   G        + +VDL  
Sbjct: 475 IFRKMLVCGEKPDHVTMIGVLCACSHAGLVEEGRHYFFSMEEHGLIPLKDHYTCMVDLLG 534

Query: 157 RMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           R G    A +L + +P   +   W  +L A
Sbjct: 535 RAGCLNEAKNLIEAMPVNPDAVVWGSLLAA 564


>gi|147853412|emb|CAN82303.1| hypothetical protein VITISV_013933 [Vitis vinifera]
          Length = 549

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 170/513 (33%), Positives = 279/513 (54%), Gaps = 19/513 (3%)

Query: 164 ALDLF-DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
           AL +F D   E N+  +N ++  F     P+E    Y KM+ EGV P+  +F      C+
Sbjct: 11  ALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTF-----PCA 65

Query: 223 IGMLLD--EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           I   LD  E K++H  + K G +++++F+ +ALV+ Y   G +  A+ +F+ +P+ DV+ 
Sbjct: 66  IKACLDVLEIKKIHGLLFKFG-LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVL 124

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN++V+ YA        LE F RM      PS  +    L+  +  G++  G+ IHG+  
Sbjct: 125 WNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAM 184

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K+G+D G V V ++L DMYGKC  IE ++ +FE    + +   NS+ +     G+    +
Sbjct: 185 KMGYDSG-VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTL 243

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN------IAV 454
            +   M+  GI  D VT++T L A S  A+   G  R +H   I SG   +      + +
Sbjct: 244 RLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHG--REIHGYMIVSGLGKDGKDIDDVLL 301

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +++D Y++CG +  +H VFE++ + +V  +  ++ GY  +G G EAL+M   M +  L
Sbjct: 302 KNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQL 361

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD+VTF+ VL+ C+H+G V +G+     MKS Y +    +HY+C+IDMLGRAG LD+A 
Sbjct: 362 KPDEVTFVGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAY 421

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           EL    P   + ++W +LL +CR+H + ++    A  + ELEP     Y  +SN Y  +G
Sbjct: 422 ELALTMPIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVG 481

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
            +E  +++R T   + + +  G S IE+ N  H
Sbjct: 482 RYEEVLEVRHTMRQQNVRKTPGCSWIELKNGVH 514



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 116/449 (25%), Positives = 213/449 (47%), Gaps = 22/449 (4%)

Query: 54  FVKSGHLNSAKKLF-DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST 112
           + K   +N A  +F D     ++  +N +ISG      P++    Y +M + G+     T
Sbjct: 2   YSKCNQMNFALSIFSDPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFT 61

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           F   +  C +     E  +IH  +   G  L+++IGS LV+ Y++ G    A   F+ELP
Sbjct: 62  FPCAIKACLDV---LEIKKIHGLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELP 118

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            R++  WN M+  + ++ + + VL  + +M  E V P+  +   ++   ++   L+ G+ 
Sbjct: 119 IRDVVLWNAMVNGYAQIGQFEMVLETFRRMNDESVVPSRFTVTGILSVFAVMGDLNNGRI 178

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY---A 289
           +H   +K+G+ D  + V+N+L+D Y  C  + +A + F+ +   D+ SWNSI S++    
Sbjct: 179 IHGFAMKMGY-DSGVAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIXSVHEQCG 237

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT-----KLGF 344
           D+D     L L  RM     +P + +    L   S    +  G++IHGY+      K G 
Sbjct: 238 DHD---GTLRLLDRMLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGK 294

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D   V +++A+ DMY KC  +  +  VFE    + +   N ++      G   +A+EMF 
Sbjct: 295 DIDDVLLKNAVIDMYAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFS 354

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMDAY 462
            M +  +  DEVT    L A S +   + G   L     +KS ++    I     ++D  
Sbjct: 355 RMCEVQLKPDEVTFVGVLSACSHAGFVSQGRNFL---AQMKSKYDVAPTIEHYTCVIDML 411

Query: 463 SRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
            R G ++ ++++   +P   N V + +++
Sbjct: 412 GRAGQLDEAYELALTMPIEANPVVWRALL 440



 Score =  127 bits (318), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 171/342 (50%), Gaps = 7/342 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++  +  ++ ++K G +  A+  F+E+P RD+V +N +++G  +    +  L  +  
Sbjct: 88  ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 147

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +  S  T + +LSV +  G    G  IH   + +G+   + + + L+D+Y +   
Sbjct: 148 MNDESVVPSRFTVTGILSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 207

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL++F+ + E+++ +WN +     +    D  LR+ ++M   G++P+ ++   ++  
Sbjct: 208 IEDALEIFEMMREKDIFSWNSIXSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPA 267

Query: 221 CSIGMLLDEGKQLHSHVIKLGW------VDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
           CS    L  G+++H ++I  G       +D ++ + NA++D Y+ CGS+ +A   F+ + 
Sbjct: 268 CSHLAALMHGREIHGYMIVSGLGKDGKDID-DVLLKNAVIDMYAKCGSMRDAHLVFERMX 326

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DV SWN ++  Y  +    +ALE+F RM   + +P   +FV  L+  S  G V  G+ 
Sbjct: 327 NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGRN 386

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
               +        ++   + + DM G+   ++ +  +  + P
Sbjct: 387 FLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 428



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-------QPNPQLNIYSSNRTIDD 53
           ML   + P + T+TT+ P C+ +  L     +  Y              ++   N  ID 
Sbjct: 249 MLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDM 308

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A  +F+ M  +D+ ++N++I G G   +  +AL ++  M    +K    TF
Sbjct: 309 YAKCGSMRDAHLVFERMXNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTF 368

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
             VLS CS+AGF ++G     ++ S       +   + ++D+  R G    A +L   +P
Sbjct: 369 VGVLSACSHAGFVSQGRNFLAQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 428

Query: 173 -ERNLATWNLMLRAFCELSR 191
            E N   W  +L A C L +
Sbjct: 429 IEANPVVWRALLAA-CRLHK 447


>gi|38606535|emb|CAE06013.3| OSJNBa0016O02.23 [Oryza sativa Japonica Group]
 gi|116310014|emb|CAH67039.1| OSIGBa0124N08.1 [Oryza sativa Indica Group]
 gi|116310420|emb|CAH67428.1| OSIGBa0150F01.8 [Oryza sativa Indica Group]
          Length = 939

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 178/624 (28%), Positives = 327/624 (52%), Gaps = 12/624 (1%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           +N  +  + K G L+SA ++F+ M   RD+ ++N  ISGC +     +AL L+  M S G
Sbjct: 201 ANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDG 260

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
              ++ T   VL VC+       G ++H  +L  G   N+   + LV +Y R G    AL
Sbjct: 261 FSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTEFNIQCNALLV-MYARCGWVDSAL 319

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +F E+ +++  +WN ML  + +     E +  + +M   G  P+    C +    ++G 
Sbjct: 320 RVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPD--HACIVSLLSAVGH 377

Query: 226 L--LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
           L  L  G+++H++ +K   +D ++ +AN L+D Y  C S+  + + FD + + D +SW +
Sbjct: 378 LGRLINGREVHAYAVKQR-LDSDLQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTT 436

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           I++ YA      +A+  F   Q    +         L   S   ++   KQ+H Y  + G
Sbjct: 437 IIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLLKQVHSYAIRNG 496

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                + +++ + D+YG+C  +  ++ +FE    + +    S++     +G + +AV +F
Sbjct: 497 LL--DLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALF 554

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
           G M++ GI  D V L   L A++  +S   G  + +H   I+  F    AV  SL+D YS
Sbjct: 555 GKMLNAGIQPDSVALVGILGAIAGLSSLTKG--KEIHGFLIRGKFPVEGAVVSSLVDMYS 612

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
            CG +  + +VF++    +VV +T+++N    +G G++A+ + + M++ G+ PD V+FL 
Sbjct: 613 GCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQAIYIFKRMLETGVSPDHVSFLA 672

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L  C+HS +V EG+   + M S Y +   ++HY+C++D+LGR+G  ++A + ++  P  
Sbjct: 673 LLYACSHSKLVDEGKFYLDMMVSKYKLQPWQEHYACVVDLLGRSGQTEEAYKFIKSMPLE 732

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
              ++W +LL +CR+H N  +     + L+ELEP +   Y  VSN ++E+G++    +IR
Sbjct: 733 PKSVVWCALLGACRIHKNHELAMIATDKLLELEPDNPGNYVLVSNVFAEMGKWNNVKEIR 792

Query: 644 ETALARKLTRDIGHSLIEV-NSCH 666
                + L +D   S IE+ N+ H
Sbjct: 793 TKMTEQGLRKDPACSWIEIGNTVH 816



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 139/554 (25%), Positives = 267/554 (48%), Gaps = 15/554 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH----GIKES 109
           + K G L  A +LFD MPAR + ++N LI  C       +A+ +Y  M +     G    
Sbjct: 103 YGKCGRLPDAHRLFDGMPARTVFSWNALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPD 162

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
             T +SVL  C   G    G ++H   +  G   +  + + LV +Y + G    AL +F+
Sbjct: 163 GCTLASVLKACGAEGDGRCGSEVHGLAVKSGLDRSTLVANALVGMYAKCGLLDSALRVFE 222

Query: 170 ELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
            + + R++A+WN  +    +     E L ++ +M+++G   N  +   +++ C+    L+
Sbjct: 223 WMRDGRDVASWNSAISGCVQNGMFLEALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLN 282

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G++LH+ ++K G  + NI   NAL+  Y+ CG +  A + F  I   D ISWNS++S Y
Sbjct: 283 HGRELHAALLKCG-TEFNI-QCNALLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCY 340

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
               L  +A++ F  M      P     V  L+     G +  G+++H Y  K   D   
Sbjct: 341 VQNRLYAEAIDFFGEMVQNGFNPDHACIVSLLSAVGHLGRLINGREVHAYAVKQRLD-SD 399

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           + + + L DMY KC  +E S  VF+    +      +++     S    +A+  F     
Sbjct: 400 LQIANTLMDMYIKCYSVECSARVFDRMRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQK 459

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           EGI +D + + + L+A S   S +L   + +H  AI++G   ++ +   ++D Y  CG +
Sbjct: 460 EGIKVDPMMMGSILEACSGLKSISL--LKQVHSYAIRNGL-LDLILKNRIIDIYGECGEV 516

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
             +  +FE +   ++V +TS++N ++ NG+  EA+ +   M+  G+ PD V  + +L   
Sbjct: 517 CYALNIFEMLDKKDIVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAI 576

Query: 529 NHSGMVKEGQLVFNSM-KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
                + +G+ +   + +  + ++      S ++DM    G ++ A ++  +     D +
Sbjct: 577 AGLSSLTKGKEIHGFLIRGKFPVEG--AVVSSLVDMYSGCGSMNYALKVFDEAK-CKDVV 633

Query: 588 MWSSLLRSCRVHGN 601
           +W++++ +  +HG+
Sbjct: 634 LWTAMINATGMHGH 647



 Score =  155 bits (392), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 137/562 (24%), Positives = 259/562 (46%), Gaps = 48/562 (8%)

Query: 127 TEGIQIHCRVLS---LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
           +EG Q+H   ++   LG     ++ + L+ +Y + G    A  LFD +P R + +WN ++
Sbjct: 72  SEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWNALI 131

Query: 184 RAFCELSRPDEVLRMYNKMKAE----GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            A        E + +Y  M+A     G  P+G +   +++ C        G ++H   +K
Sbjct: 132 GACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGLAVK 191

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYADYDLIFDAL 298
            G +D +  VANALV  Y+ CG L  A + F+++    DV SWNS +S      +  +AL
Sbjct: 192 SG-LDRSTLVANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFLEAL 250

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ-SALTD 357
           +LF RMQ      +  + V  L   +    +  G+++H  + K G +    ++Q +AL  
Sbjct: 251 DLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHGRELHAALLKCGTE---FNIQCNALLV 307

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY +C  ++S++ VF     +     NS+++  + +    +A++ FG MV  G   D   
Sbjct: 308 MYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPDHAC 367

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           + + L A  V     L + R +H  A+K   +S++ ++ +LMD Y +C  +E S +VF++
Sbjct: 368 IVSLLSA--VGHLGRLINGREVHAYAVKQRLDSDLQIANTLMDMYIKCYSVECSARVFDR 425

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-------- 529
           +   + V +T+I+  Y+++    EA+       + G+  D +    +L  C+        
Sbjct: 426 MRIKDHVSWTTIIACYAQSSRYSEAIGKFRTAQKEGIKVDPMMMGSILEACSGLKSISLL 485

Query: 530 ---HSGMVKEGQL---VFNSMKSVYG--------------ID-ADRQHYSCMIDMLGRAG 568
              HS  ++ G L   + N +  +YG              +D  D   ++ M++     G
Sbjct: 486 KQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKDIVTWTSMVNCFAENG 545

Query: 569 ILDKAEELLQQTPGGG---DCMMWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFAVYS 624
           +L +A  L  +    G   D +    +L +     +   G+ +   L+  + PV+ AV S
Sbjct: 546 LLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHGFLIRGKFPVEGAVVS 605

Query: 625 QVSNFYSEIGEFEVSMQIRETA 646
            + + YS  G    ++++ + A
Sbjct: 606 SLVDMYSGCGSMNYALKVFDEA 627



 Score =  150 bits (378), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 110/406 (27%), Positives = 195/406 (48%), Gaps = 15/406 (3%)

Query: 168 FDELPERNL--ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS-FCYMVRGCSIG 224
           F   P R L  A+    LR  C+     E LR      A G  P     + +++   ++ 
Sbjct: 9   FHPTPRRKLPPASAGASLRQLCKDGDLREALRQLAARSARGRAPPPTDHYGWVLDLVAVR 68

Query: 225 MLLDEGKQLHSHVIKLGWV--DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
             + EG+QLH+H +  G +  D   F+A  L+  Y  CG L +A + FD +P   V SWN
Sbjct: 69  RAVSEGRQLHAHAVATGALGDDDAGFLATKLLFMYGKCGRLPDAHRLFDGMPARTVFSWN 128

Query: 283 SIVSIYADYDLIFDALELFFRMQ----LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +++          +A+ ++  M+    +    P   +    L      G+   G ++HG 
Sbjct: 129 ALIGACLSSGGAGEAVGVYRAMRASEPVAGAAPDGCTLASVLKACGAEGDGRCGSEVHGL 188

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNIK 397
             K G D  ++ V +AL  MY KC +++S++ VFE    GR +   NS ++  + +G   
Sbjct: 189 AVKSGLDRSTL-VANALVGMYAKCGLLDSALRVFEWMRDGRDVASWNSAISGCVQNGMFL 247

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+++F  M  +G  ++  T    L+  +  A  N G  R LH   +K G E NI  + +
Sbjct: 248 EALDLFRRMQSDGFSMNSYTTVGVLQVCAELAQLNHG--RELHAALLKCGTEFNIQCN-A 304

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+  Y+RCG ++ + +VF +I   + + + S+++ Y +N +  EA+D    M+Q G  PD
Sbjct: 305 LLVMYARCGWVDSALRVFREIGDKDYISWNSMLSCYVQNRLYAEAIDFFGEMVQNGFNPD 364

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
               + +L+   H G +  G+ V ++      +D+D Q  + ++DM
Sbjct: 365 HACIVSLLSAVGHLGRLINGREV-HAYAVKQRLDSDLQIANTLMDM 409



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 54/217 (24%), Positives = 107/217 (49%)

Query: 15  TLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARD 74
           ++   C+ +  +S    + SY   N  L++   NR ID + + G +  A  +F+ +  +D
Sbjct: 471 SILEACSGLKSISLLKQVHSYAIRNGLLDLILKNRIIDIYGECGEVCYALNIFEMLDKKD 530

Query: 75  MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHC 134
           +VT+  +++   +     +A+ L+ +M++ GI+  +     +L   +     T+G +IH 
Sbjct: 531 IVTWTSMVNCFAENGLLHEAVALFGKMLNAGIQPDSVALVGILGAIAGLSSLTKGKEIHG 590

Query: 135 RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
            ++   F +   + S LVD+Y   G    AL +FDE   +++  W  M+ A        +
Sbjct: 591 FLIRGKFPVEGAVVSSLVDMYSGCGSMNYALKVFDEAKCKDVVLWTAMINATGMHGHGKQ 650

Query: 195 VLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            + ++ +M   GV P+ +SF  ++  CS   L+DEGK
Sbjct: 651 AIYIFKRMLETGVSPDHVSFLALLYACSHSKLVDEGK 687


>gi|225427607|ref|XP_002269121.1| PREDICTED: pentatricopeptide repeat-containing protein At4g19220,
           mitochondrial [Vitis vinifera]
          Length = 828

 Score =  275 bits (703), Expect = 6e-71,   Method: Compositional matrix adjust.
 Identities = 173/624 (27%), Positives = 319/624 (51%), Gaps = 22/624 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-I 106
           N  I  + +   + +A+ LF EM  +D+V++N ++ G    +   +A  L  EM   G +
Sbjct: 215 NSLISLYSQCRDIQAAEILFKEMKYKDIVSWNAMLDGLALNQRIWEAFDLLHEMQLLGCV 274

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           +  + T   ++ +C+      EG  +H   L    GL+  + + L+D+Y +     RA  
Sbjct: 275 QPDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEH 334

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F  +PER+L +WN M+  + +     E   ++ ++     + +  +   ++  C     
Sbjct: 335 VFKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEF 394

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIV 285
           L  G+ +H   +KLG+ + N    N+L+  Y  CG L+        +    D++ WN+++
Sbjct: 395 LQFGESIHCWQLKLGFAN-NPLAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVM 453

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSI-RSFVEFLNFASRTGNV---YFGKQIHGYVTK 341
           +        ++AL+ F    L R+ P +    V   N  S  GN+   + G  +HG   K
Sbjct: 454 AGCTQNGHFWEALKAF---NLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALK 510

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              +   + VQ+AL  MYG+C  IE++  +F  +  R+L   N ++++   + + + A+E
Sbjct: 511 TLME-SDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALE 569

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSL 458
           +F  +  E    +E+T+   L     SA   LG  R    +H   I+S  + N  VS +L
Sbjct: 570 LFCHIEFEP---NEITIVGIL-----SACTQLGVLRHGKQIHGHVIRSRLQGNSFVSAAL 621

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
            D YS CG ++ + Q+F+  P  +V  + S+++ +  +  G +A+++   M + G  P K
Sbjct: 622 EDMYSNCGRLDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTK 681

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            TF+ +L+ C+HSG+V EG   +++M  ++ ++AD +H+ CM+DMLGRAG L +A E ++
Sbjct: 682 STFISLLSACSHSGLVNEGLWYYSNMLELFNVEADTEHHVCMVDMLGRAGRLGEAYEFIR 741

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           Q P   +  +W +LL +C  HG+  +GR VA +L ELEP +   Y  +SN Y   G ++ 
Sbjct: 742 QMPTQPEPGVWGALLSACSYHGDLKMGREVAELLFELEPENVGYYISLSNMYVAAGRWKD 801

Query: 639 SMQIRETALARKLTRDIGHSLIEV 662
           ++++R     + L +   +SLI+V
Sbjct: 802 AVELRRIIQDKGLKKPAAYSLIDV 825



 Score =  171 bits (433), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 144/588 (24%), Positives = 283/588 (48%), Gaps = 24/588 (4%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           +S   +  + ++   +S+  LFDE+  RD++ +N +I+   + +    A+ L+ E++  G
Sbjct: 9   TSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELMGEG 68

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +   ++T   V+S  S+ G  T+G  +H      G   + ++ + L+D+Y + G    + 
Sbjct: 69  VGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLSDSFLCNALIDMYAKCGELSSSE 128

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +F  +  R++ +WN M+R     + P + L  + KM     + + +S    V   ++  
Sbjct: 129 CVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSASALLG 188

Query: 226 LLDEGKQLHSHVIKLGWVDV--NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
            L  G+ +H   IKLG+ D+  N F  N+L+  YS C  +  A+  F  +   D++SWN+
Sbjct: 189 ELSFGQVIHGWGIKLGYKDISHNSF-ENSLISLYSQCRDIQAAEILFKEMKYKDIVSWNA 247

Query: 284 IVSIYADYDLIFDALELFFRMQLCR-KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK- 341
           ++   A    I++A +L   MQL    +P   + V  +   +    +  G+ +HG   + 
Sbjct: 248 MLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREGRAVHGLTLRR 307

Query: 342 -LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            +G D     V ++L DMY KC  ++ +  VF++ P R L   N++++    +G+ ++A 
Sbjct: 308 EMGLD---FSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSREAQ 364

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKAL-SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
            +F  ++       + +LST L  L S  +S  L     +HC  +K GF +N     SLM
Sbjct: 365 HLFRQLLQS---YSQCSLSTLLAILPSCDSSEFLQFGESIHCWQLKLGFANNPLAVNSLM 421

Query: 460 DAYSRCGHIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR-GLIPD 517
             Y  CG +     + + +  + ++VC+ ++M G ++NG   EAL    +M Q   +  D
Sbjct: 422 LMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFNLMRQDPDVCHD 481

Query: 518 KVTFLCVLAGC-NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
            V    V++ C N   +   G L   ++K++  +++D +  + +I M GR G ++ A  +
Sbjct: 482 SVALFNVISACGNLELLFAGGSLHGLALKTL--MESDIRVQNALITMYGRCGEIENARII 539

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL--MELEPVDFAV 622
              +     C  W+ ++ +   + +   GRR   +   +E EP +  +
Sbjct: 540 FGFSCNRNLC-SWNCMISAFSQNKD---GRRALELFCHIEFEPNEITI 583



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 130/509 (25%), Positives = 244/509 (47%), Gaps = 19/509 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  + P C  ++ L     +     +    L+   +N  ID + K   +  A+ +
Sbjct: 276 PDSVTVVIIIPLCAELMLLREGRAVHGLTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHV 335

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  +P RD+V++N +ISG  +  H ++A +L+ +++    + S ST  ++L  C ++ F 
Sbjct: 336 FKAIPERDLVSWNAMISGYSQNGHSREAQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFL 395

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL-PERNLATWNLMLRA 185
             G  IHC  L LGF  N    + L+ +Y+  G  V    L   +    ++  WN ++  
Sbjct: 396 QFGESIHCWQLKLGFANNPLAVNSLMLMYINCGDLVACFSLLQTVSAAADIVCWNTVMAG 455

Query: 186 FCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
             +     E L+ +N M+ +  V  + ++   ++  C    LL  G  LH   +K   ++
Sbjct: 456 CTQNGHFWEALKAFNLMRQDPDVCHDSVALFNVISACGNLELLFAGGSLHGLALKT-LME 514

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            +I V NAL+  Y  CG +  A+  F F    ++ SWN ++S ++       ALELF  +
Sbjct: 515 SDIRVQNALITMYGRCGEIENARIIFGFSCNRNLCSWNCMISAFSQNKDGRRALELFCHI 574

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +     P+  + V  L+  ++ G +  GKQIHG+V +     G+  V +AL DMY  C  
Sbjct: 575 EF---EPNEITIVGILSACTQLGVLRHGKQIHGHVIRSRL-QGNSFVSAALEDMYSNCGR 630

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++++  +F+S+P RS+   NS++++     N   A+E+F  M + G    + T  + L A
Sbjct: 631 LDTAFQIFQSSPERSVAAWNSMISAFGFHSNGGKAIELFHEMRECGTRPTKSTFISLLSA 690

Query: 425 LSVSASANLG---SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS- 480
            S S   N G      +L    +++  E ++     ++D   R G +  +++   ++P+ 
Sbjct: 691 CSHSGLVNEGLWYYSNMLELFNVEADTEHHVC----MVDMLGRAGRLGEAYEFIRQMPTQ 746

Query: 481 PNVVCFTSIMNGYSRNG---MGREALDML 506
           P    + ++++  S +G   MGRE  ++L
Sbjct: 747 PEPGVWGALLSACSYHGDLKMGREVAELL 775



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 115/476 (24%), Positives = 224/476 (47%), Gaps = 7/476 (1%)

Query: 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           +L   + L+  Y R      +  LFDE+  R++  WN M+ A  E       + ++ ++ 
Sbjct: 6   HLPTSTSLLTAYSRAADFSSSWALFDEILYRDVILWNAMITASVENQCFGVAVNLFVELM 65

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
            EGV  +  +   +V   S    L +G+ LH    K G +  + F+ NAL+D Y+ CG L
Sbjct: 66  GEGVGLDSTTLLIVVSASSHMGNLTQGRVLHGISFKTGLLS-DSFLCNALIDMYAKCGEL 124

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
             ++  F  +   D+ISWNS++   A  +    +L  F +M    ++    S    ++ +
Sbjct: 125 SSSECVFGGMEYRDIISWNSMMRGCAYNNYPKKSLWYFKKMAYSSEQADNVSLTCAVSAS 184

Query: 324 SRTGNVYFGKQIHGYVTKLGF-DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
           +  G + FG+ IHG+  KLG+ D      +++L  +Y +C  I+++  +F+    + +  
Sbjct: 185 ALLGELSFGQVIHGWGIKLGYKDISHNSFENSLISLYSQCRDIQAAEILFKEMKYKDIVS 244

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
            N+++  L  +  I +A ++   M   G +  D VT+   +   +       G  R +H 
Sbjct: 245 WNAMLDGLALNQRIWEAFDLLHEMQLLGCVQPDSVTVVIIIPLCAELMLLREG--RAVHG 302

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             ++     + +V+ SL+D YS+C  ++ +  VF+ IP  ++V + ++++GYS+NG  RE
Sbjct: 303 LTLRREMGLDFSVTNSLIDMYSKCKDVKRAEHVFKAIPERDLVSWNAMISGYSQNGHSRE 362

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A  +   ++Q        T L +L  C+ S  ++ G+ + +  +   G   +    + ++
Sbjct: 363 AQHLFRQLLQSYSQCSLSTLLAILPSCDSSEFLQFGESI-HCWQLKLGFANNPLAVNSLM 421

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617
            M    G L     LLQ      D + W++++  C  +G+     +  N LM  +P
Sbjct: 422 LMYINCGDLVACFSLLQTVSAAADIVCWNTVMAGCTQNGHFWEALKAFN-LMRQDP 476


>gi|356518834|ref|XP_003528082.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Glycine max]
          Length = 875

 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 189/703 (26%), Positives = 348/703 (49%), Gaps = 48/703 (6%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHL- 60
           S + LP   T+ T+ P C  +  L +   +  Y  +     +    N  +  + K G + 
Sbjct: 139 SREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVS 198

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           + A  +FD +  +D+V++N +I+G  + R  + A  L+  MV    + + +T +++L VC
Sbjct: 199 HDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVC 258

Query: 121 SN---AGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           ++   +  Y  G QIH  VL       ++ + + L+ LY+++G    A  LF  +  R+L
Sbjct: 259 ASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDL 318

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
            TWN  +  +       + L ++  + + E + P+ ++   ++  C+    L  GKQ+H+
Sbjct: 319 VTWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHA 378

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           ++ +  ++  +  V NALV FY+ CG   EA  +F  I + D+ISWNSI   + +     
Sbjct: 379 YIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMISMKDLISWNSIFDAFGEKRHHS 438

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG--FDHGSVHVQS 353
             L L   M   R RP   + +  +   +    V   K+IH Y  + G    + +  V +
Sbjct: 439 RFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPTVGN 498

Query: 354 ALTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD---- 408
           A+ D Y KC  +E +  +F++ +  R+L  CNSL++  +  G+  DA  +F  M +    
Sbjct: 499 AILDAYSKCGNMEYANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSETDLT 558

Query: 409 ----------------EGIGL-----------DEVTLSTTLKALSVSASANLGSCRLLHC 441
                           + +GL           D VT+ + L   +  AS +L    L  C
Sbjct: 559 TWNLMVRVYAENDCPEQALGLCHELQARGMKPDTVTIMSLLPVCTQMASVHL----LSQC 614

Query: 442 CA--IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
               I+S F+ ++ +  +L+DAY++CG I  ++++F+     ++V FT+++ GY+ +GM 
Sbjct: 615 QGYIIRSCFK-DLHLEAALLDAYAKCGIIGRAYKIFQLSAEKDLVMFTAMIGGYAMHGMS 673

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            EAL +   M++ G+ PD + F  +L+ C+H+G V EG  +F S++ ++G+    + Y+C
Sbjct: 674 EEALWIFSHMLKLGIQPDHIIFTSILSACSHAGRVDEGLKIFYSIEKLHGMKPTVEQYAC 733

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           ++D+L R G + +A  L+   P   +  +W +LL +C+ H    +GR VAN L ++E  D
Sbjct: 734 VVDLLARGGRISEAYSLVTSLPIEANANLWGTLLGACKTHHEVELGRIVANQLFKIEAND 793

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
              Y  +SN Y+    ++  M++R     + L +  G S IEV
Sbjct: 794 IGNYIVLSNLYAADARWDGVMEVRRMMRNKDLKKPAGCSWIEV 836



 Score =  158 bits (399), Expect = 9e-36,   Method: Compositional matrix adjust.
 Identities = 138/532 (25%), Positives = 244/532 (45%), Gaps = 35/532 (6%)

Query: 70  MPARDMVTYNLLI-SGCGKFRHPKQALYLYDEMVS--HGIKESASTFSSVLSVCSNAGFY 126
           M  RD  T+  +I S C + +H  +AL L+   +      K   +  +++L  CS     
Sbjct: 1   MLGRDFKTWGSVIWSLCLEAKH-SEALSLFHHCLKGHEAFKPDHTVLAAILKSCSALLAP 59

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  +H  V+  G G        L+++Y + G  V  L LFD+L   +   WN++L  F
Sbjct: 60  NLGRTLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKLFDQLSHCDPVVWNIVLSGF 119

Query: 187 CELSRPD-EVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
              ++ D +V+R++  M  +    PN ++   ++  C+    LD GK +H +VIK G+ D
Sbjct: 120 SGSNKCDADVMRVFRMMHSSREALPNSVTVATVLPVCARLGDLDAGKCVHGYVIKSGF-D 178

Query: 245 VNIFVANALVDFYSACGSLI-EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
            +    NALV  Y+ CG +  +A   FD I   DV+SWN++++  A+  L+ DA  LF  
Sbjct: 179 QDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNAMIAGLAENRLVEDAFLLFSS 238

Query: 304 MQLCRKRPSIRSFVEFLNFAS---RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           M     RP+  +    L   +   ++   Y G+QIH YV +       V V +AL  +Y 
Sbjct: 239 MVKGPTRPNYATVANILPVCASFDKSVAYYCGRQIHSYVLQWPELSADVSVCNALISLYL 298

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLS 419
           K   +  + A+F +   R L   N+ +     +G    A+ +FG +   E +  D VT+ 
Sbjct: 299 KVGQMREAEALFWTMDARDLVTWNAFIAGYTSNGEWLKALHLFGNLASLETLLPDSVTMV 358

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFE-SNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           + L A   +   NL   + +H    +  F   + AV  +L+  Y++CG+ E ++  F  I
Sbjct: 359 SILPA--CAQLKNLKVGKQIHAYIFRHPFLFYDTAVGNALVSFYAKCGYTEEAYHTFSMI 416

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN--------- 529
              +++ + SI + +         L +L  M++  + PD VT L ++  C          
Sbjct: 417 SMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLKLRIRPDSVTILAIIRLCASLLRVEKVK 476

Query: 530 --HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
             HS  ++ G L+ N+  +V          + ++D   + G ++ A ++ Q 
Sbjct: 477 EIHSYSIRTGSLLSNTAPTV---------GNAILDAYSKCGNMEYANKMFQN 519



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 153/691 (22%), Positives = 307/691 (44%), Gaps = 73/691 (10%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNR-TIDDFVKSGHLNSAKKL 66
           P    +  +  +C++++  +    L  Y       + + +N+  ++ + K G L    KL
Sbjct: 41  PDHTVLAAILKSCSALLAPNLGRTLHGYVVKQGHGSCHVTNKGLLNMYAKCGMLVECLKL 100

Query: 67  FDEMPARDMVTYNLLISG-CGKFRHPKQALYLYDEMVSHGIKES---ASTFSSVLSVCSN 122
           FD++   D V +N+++SG  G  +     + ++  M  H  +E+   + T ++VL VC+ 
Sbjct: 101 FDQLSHCDPVVWNIVLSGFSGSNKCDADVMRVFRMM--HSSREALPNSVTVATVLPVCAR 158

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-PSVRALDLFDELPERNLATWNL 181
            G    G  +H  V+  GF  +   G+ LV +Y + G  S  A  +FD +  +++ +WN 
Sbjct: 159 LGDLDAGKCVHGYVIKSGFDQDTLGGNALVSMYAKCGLVSHDAYAVFDNIAYKDVVSWNA 218

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE------GKQLHS 235
           M+    E    ++   +++ M      PN  +   ++  C+     D+      G+Q+HS
Sbjct: 219 MIAGLAENRLVEDAFLLFSSMVKGPTRPNYATVANILPVCAS---FDKSVAYYCGRQIHS 275

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           +V++   +  ++ V NAL+  Y   G + EA+  F  +   D+++WN+ ++ Y       
Sbjct: 276 YVLQWPELSADVSVCNALISLYLKVGQMREAEALFWTMDARDLVTWNAFIAGYTSNGEWL 335

Query: 296 DALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            AL LF  +  L    P   + V  L   ++  N+  GKQIH Y+ +  F      V +A
Sbjct: 336 KALHLFGNLASLETLLPDSVTMVSILPACAQLKNLKVGKQIHAYIFRHPFLFYDTAVGNA 395

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L   Y KC   E +   F     + L   NS+  +     +    + +   M+   I  D
Sbjct: 396 LVSFYAKCGYTEEAYHTFSMISMKDLISWNSIFDAFGEKRHHSRFLSLLHCMLKLRIRPD 455

Query: 415 EVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSG-FESNIA--VSCSLMDAYSRCGHIEL 470
            VT+   L  + + AS   +   + +H  +I++G   SN A  V  +++DAYS+CG++E 
Sbjct: 456 SVTI---LAIIRLCASLLRVEKVKEIHSYSIRTGSLLSNTAPTVGNAILDAYSKCGNMEY 512

Query: 471 SHQVFEKIPSP-NVVCFTSIMNG-------------------------------YSRNGM 498
           ++++F+ +    N+V   S+++G                               Y+ N  
Sbjct: 513 ANKMFQNLSEKRNLVTCNSLISGYVGLGSHHDANMIFSGMSETDLTTWNLMVRVYAENDC 572

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK-----EGQLVFNSMKSVYGIDAD 553
             +AL +   +  RG+ PD VT + +L  C     V      +G ++ +  K       D
Sbjct: 573 PEQALGLCHELQARGMKPDTVTIMSLLPVCTQMASVHLLSQCQGYIIRSCFK-------D 625

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
               + ++D   + GI+ +A ++ Q +    D +M+++++    +HG       + + ++
Sbjct: 626 LHLEAALLDAYAKCGIIGRAYKIFQLS-AEKDLVMFTAMIGGYAMHGMSEEALWIFSHML 684

Query: 614 EL--EPVDFAVYSQVSNFYSEIGEFEVSMQI 642
           +L  +P D  +++ + +  S  G  +  ++I
Sbjct: 685 KLGIQP-DHIIFTSILSACSHAGRVDEGLKI 714


>gi|218195864|gb|EEC78291.1| hypothetical protein OsI_18005 [Oryza sativa Indica Group]
          Length = 690

 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 164/559 (29%), Positives = 289/559 (51%), Gaps = 7/559 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E     + +L   +       G+Q+H  ++ LGFG +  + + L+D+Y + G    A ++
Sbjct: 2   ERRRMIADLLRASARGSSLRGGVQLHAALMKLGFGSDTMLNNNLIDMYAKCGKLHMAGEV 61

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD +PERN+ +W  ++  F       E LR++ +M+  G  PN  +    ++ C  G   
Sbjct: 62  FDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGTSPNEFTLSATLKACGGGT-- 119

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             G Q+H   ++ G+   ++ VAN+LV  YS      +A++ FD IP  ++ +WNS++S 
Sbjct: 120 RAGVQIHGVCVRTGFEGHDV-VANSLVVMYSKGRWTGDARRVFDVIPSRNLATWNSMISG 178

Query: 288 YADYDLIFDALELFFRMQLCR-KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           YA      D+L +F  MQ    ++P   +F   L   S  G    G Q+H  +   G   
Sbjct: 179 YAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLGAAREGAQVHAAMAVRGVSP 238

Query: 347 GSVHV-QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
            S  +   AL D+Y KC+ +  ++ VF+    R+     +++      G +K+A+ +F  
Sbjct: 239 ASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLFRR 298

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
               G+  D   LS+ +   +  A    G  + +HC   K+    +++V+ SL+D Y +C
Sbjct: 299 FWSSGVRADGHVLSSVVAVFADFALVEQG--KQVHCYTAKTPAGLDVSVANSLVDMYLKC 356

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G    + + F ++P+ NVV +T+++NG  ++G GREA+D+ E M   G+  D+V +L +L
Sbjct: 357 GLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALL 416

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+HSG+V E +  F+ +     +    +HY+CM+D+LGRAG L +A+EL+   P    
Sbjct: 417 SACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPT 476

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             +W +LL +CRVH +  +GR V ++L+ ++  +   Y  +SN  +E GE+     IR  
Sbjct: 477 VGVWQTLLSACRVHKDVAVGREVGDVLLAVDGDNPVNYVMLSNILAEAGEWRECQGIRGA 536

Query: 646 ALARKLTRDIGHSLIEVNS 664
              + L +  G S  EV+ 
Sbjct: 537 MRRKGLRKQGGCSWTEVDK 555



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 130/474 (27%), Positives = 221/474 (46%), Gaps = 26/474 (5%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ID + K G L+ A ++FD MP R++V++  L+ G       ++ L L+ EM   G 
Sbjct: 42  NNNLIDMYAKCGKLHMAGEVFDGMPERNVVSWTALMVGFLHHGEARECLRLFGEMRGSGT 101

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +  T S+ L  C   G    G+QIH   +  GF  +  + + LV +Y +   +  A  
Sbjct: 102 SPNEFTLSATLKAC--GGGTRAGVQIHGVCVRTGFEGHDVVANSLVVMYSKGRWTGDARR 159

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGM 225
           +FD +P RNLATWN M+  +    +  + L ++ +M+    E P+  +F  +++ CS   
Sbjct: 160 VFDVIPSRNLATWNSMISGYAHAGQGRDSLLVFREMQRRHDEQPDEFTFASLLKACSGLG 219

Query: 226 LLDEGKQLHSHVIKLGWVDV-NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              EG Q+H+ +   G     N  +A AL+D Y  C  L  A + FD +   + I W ++
Sbjct: 220 AAREGAQVHAAMAVRGVSPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTV 279

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPS---IRSFVE-FLNFASRTGNVYFGKQIHGYVT 340
           +  +A    + +A+ LF R      R     + S V  F +FA     V  GKQ+H Y  
Sbjct: 280 IVGHAQEGQVKEAMCLFRRFWSSGVRADGHVLSSVVAVFADFAL----VEQGKQVHCYTA 335

Query: 341 KL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           K   G D   V V ++L DMY KC +   +   F   P R++    +++  +   G+ ++
Sbjct: 336 KTPAGLD---VSVANSLVDMYLKCGLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGRE 392

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR--LLHCCAIKSGFESNIAVSC 456
           A+++F  M  EG+  DEV     L A S S   +   CR      C  +         +C
Sbjct: 393 AIDLFEEMQAEGVEADEVAYLALLSACSHSGLVD--ECRRYFSRICQDRRMRPKAEHYAC 450

Query: 457 SLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
            ++D   R G +  + ++   +P  P V  + ++++    +    +GRE  D+L
Sbjct: 451 -MVDLLGRAGELREAKELILSMPMEPTVGVWQTLLSACRVHKDVAVGREVGDVL 503



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 125/249 (50%), Gaps = 1/249 (0%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           +P  N   +   +D +VK   L  A ++FD +  R+ + +  +I G  +    K+A+ L+
Sbjct: 237 SPASNAILAGALLDVYVKCHRLPVAMQVFDGLERRNAIQWTTVIVGHAQEGQVKEAMCLF 296

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
               S G++      SSV++V ++     +G Q+HC       GL++ + + LVD+Y++ 
Sbjct: 297 RRFWSSGVRADGHVLSSVVAVFADFALVEQGKQVHCYTAKTPAGLDVSVANSLVDMYLKC 356

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G +  A   F E+P RN+ +W  M+    +     E + ++ +M+AEGVE + +++  ++
Sbjct: 357 GLTGEAGRRFREMPARNVVSWTAMINGVGKHGHGREAIDLFEEMQAEGVEADEVAYLALL 416

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             CS   L+DE ++  S + +   +         +VD     G L EAK+    +P++  
Sbjct: 417 SACSHSGLVDECRRYFSRICQDRRMRPKAEHYACMVDLLGRAGELREAKELILSMPMEPT 476

Query: 279 IS-WNSIVS 286
           +  W +++S
Sbjct: 477 VGVWQTLLS 485


>gi|9279602|dbj|BAB01060.1| unnamed protein product [Arabidopsis thaliana]
          Length = 598

 Score =  275 bits (703), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 161/538 (29%), Positives = 292/538 (54%), Gaps = 13/538 (2%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           HC  +  G   ++Y+ + ++D Y++ G    A  LFDE+P+R+  +WN M+  +    + 
Sbjct: 23  HCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL 82

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           ++   ++  MK  G + +G SF  +++G +     D G+Q+H  VIK G+ + N++V ++
Sbjct: 83  EDAWCLFTCMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGY-ECNVYVGSS 141

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           LVD Y+ C  + +A ++F  I   + +SWN+++   A +  + D    F+ + L   + +
Sbjct: 142 LVDMYAKCERVEDAFEAFKEISEPNSVSWNALI---AGFVQVRDIKTAFWLLGLMEMKAA 198

Query: 313 IR----SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
           +     +F   L            KQ+H  V KLG  H  + + +A+   Y  C  +  +
Sbjct: 199 VTMDAGTFAPLLTLLDDPMFCNLLKQVHAKVLKLGLQH-EITICNAMISSYADCGSVSDA 257

Query: 369 VAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
             VF+   G + L   NS++      G  +DAV+ F ++    I +D+   S  L++ S 
Sbjct: 258 KRVFDGLGGSKDLISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSD 317

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN-VVCF 486
            A+  LG  + +H  A KSGF SN  V  SL+  YS+CG IE + + F++I S +  V +
Sbjct: 318 LATLQLG--QQIHALATKSGFVSNEFVISSLIVMYSKCGIIESARKCFQQISSKHSTVAW 375

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++ GY+++G+G+ +LD+   M  + +  D VTF  +L  C+H+G+++EG  + N M+ 
Sbjct: 376 NAMILGYAQHGLGQVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEGLELLNLMEP 435

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
           VY I    +HY+  +D+LGRAG+++KA+EL++  P   D M+  + L  CR  G   +  
Sbjct: 436 VYKIQPRMEHYAAAVDLLGRAGLVNKAKELIESMPLNPDPMVLKTFLGVCRACGEIEMAT 495

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +VAN L+E+EP D   Y  +S+ YS++ ++E    +++    R + +  G S IE+ +
Sbjct: 496 QVANHLLEIEPEDHFTYVSLSHMYSDLKKWEEKASVKKMMKERGVKKVPGWSWIEIRN 553



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 129/443 (29%), Positives = 218/443 (49%), Gaps = 12/443 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLYD 99
           +IY SNR +D ++K G L  A  LFDEMP RD V++N +ISG   CGK    + A  L+ 
Sbjct: 34  DIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCGKL---EDAWCLFT 90

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G      +FS +L   ++   +  G Q+H  V+  G+  N+Y+GS LVD+Y +  
Sbjct: 91  CMKRSGSDVDGYSFSRLLKGIASVKRFDLGEQVHGLVIKGGYECNVYVGSSLVDMYAKCE 150

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMV 218
               A + F E+ E N  +WN ++  F ++        +   M+ +  V  +  +F  ++
Sbjct: 151 RVEDAFEAFKEISEPNSVSWNALIAGFVQVRDIKTAFWLLGLMEMKAAVTMDAGTFAPLL 210

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDD 277
                 M  +  KQ+H+ V+KLG +   I + NA++  Y+ CGS+ +AK+ FD +    D
Sbjct: 211 TLLDDPMFCNLLKQVHAKVLKLG-LQHEITICNAMISSYADCGSVSDAKRVFDGLGGSKD 269

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           +ISWNS+++ +A   L  DA++ F  ++    +    +F   L   S    +  G+QIH 
Sbjct: 270 LISWNSMIAGFAQKGLSEDAVKFFSYLRSSEIKVDDYAFSALLRSCSDLATLQLGQQIHA 329

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLHSGNI 396
             TK GF      V S+L  MY KC +IES+   F+    + S    N+++      G  
Sbjct: 330 LATKSGFVSNEF-VISSLIVMYSKCGIIESARKCFQQISSKHSTVAWNAMILGYAQHGLG 388

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + ++++F  M ++ + LD VT +  L A S +     G   LL+        +  +    
Sbjct: 389 QVSLDLFSQMCNQNVKLDHVTFTAILTACSHTGLIQEG-LELLNLMEPVYKIQPRMEHYA 447

Query: 457 SLMDAYSRCGHIELSHQVFEKIP 479
           + +D   R G +  + ++ E +P
Sbjct: 448 AAVDLLGRAGLVNKAKELIESMP 470



 Score = 48.9 bits (115), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           L HC AIK G  S+I VS  ++D+Y + G +  ++ +F+++P  + V + ++++GY+  G
Sbjct: 21  LTHCYAIKCGSISDIYVSNRILDSYIKFGFLGYANMLFDEMPKRDSVSWNTMISGYTSCG 80

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
              +A  +   M + G   D  +F  +L G
Sbjct: 81  KLEDAWCLFTCMKRSGSDVDGYSFSRLLKG 110


>gi|222637655|gb|EEE67787.1| hypothetical protein OsJ_25518 [Oryza sativa Japonica Group]
          Length = 588

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 163/550 (29%), Positives = 292/550 (53%), Gaps = 22/550 (4%)

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGI---QIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           S  ++  A T +  LS+ +  G   EG    Q+H      G   ++++G+ LV  Y R G
Sbjct: 4   SGAVRPDAVTCTVALSLAAGRG---EGFLVRQLHALAWRSGLAADVFVGNALVTAYSRGG 60

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSR----PDEVLRMYNKMKAEG-VEPNGLSF 214
               A  +FD++P R+L +WN ++   C L++    P EV+ ++ +M  +G V+P+ +S 
Sbjct: 61  SLGEARSVFDDMPARDLVSWNALI---CGLAQDGDCPAEVIGVFLRMLRDGDVQPDRISV 117

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
           C ++  C     L+ G+Q+H   +KLG V+  + + N LV  Y  CG+   A++ FD + 
Sbjct: 118 CSVIPACGGEGKLELGRQVHGFAVKLG-VEGYVSIGNVLVAMYYKCGAPGSARRLFDAMS 176

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DV+SW + +S+  +     DAL LF  M+     P+  +FV  ++           + 
Sbjct: 177 ERDVVSWTTAISMDGE-----DALTLFNGMRRDGVPPNEVTFVALMSALPADCPARGAQM 231

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H    K     G     ++L  MY K   ++ +  VF+  P R +   N++++    +G
Sbjct: 232 VHAACLKAAVS-GEAAASNSLITMYAKARRMDDARMVFDLMPRREIIAWNAVISGYAQNG 290

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
              DA+E+F  M    +  +E T ++ L A++   + ++   ++ H  A+  GF  +  V
Sbjct: 291 RCNDALELFSSMA-RCLTPNETTFASVLSAVTAVETVSMAYGQMYHSRALSMGFGDSEYV 349

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           + +L+D Y++ G++E S + F +    +++ +T+I++  +R+G     + +   M + G+
Sbjct: 350 AGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGAVMSLFGDMARSGV 409

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD V  L VL  C + GMV  G+ +F+SM +  G++   +HYSC++DMLGRAG L +AE
Sbjct: 410 APDGVVLLAVLTACRYGGMVDAGRDIFDSMAADRGVELWPEHYSCVVDMLGRAGRLAEAE 469

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           EL+ + P G       SLL +CR+HG+  IG R+A IL E EP +   Y  +SN Y+++G
Sbjct: 470 ELMMRMPAGPSVSALQSLLGACRIHGDAEIGERIARILTEKEPTESGAYVLLSNIYADVG 529

Query: 635 EFEVSMQIRE 644
           +++   ++R 
Sbjct: 530 DWDGVAKVRR 539



 Score =  168 bits (426), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 118/454 (25%), Positives = 211/454 (46%), Gaps = 14/454 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH-PKQALYLYDEM 101
           +++  N  +  + + G L  A+ +FD+MPARD+V++N LI G  +    P + + ++  M
Sbjct: 45  DVFVGNALVTAYSRGGSLGEARSVFDDMPARDLVSWNALICGLAQDGDCPAEVIGVFLRM 104

Query: 102 VSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +  G ++    +  SV+  C   G    G Q+H   + LG    + IG+ LV +Y + G 
Sbjct: 105 LRDGDVQPDRISVCSVIPACGGEGKLELGRQVHGFAVKLGVEGYVSIGNVLVAMYYKCGA 164

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD + ER++ +W   +    E     + L ++N M+ +GV PN ++F  ++  
Sbjct: 165 PGSARRLFDAMSERDVVSWTTAISMDGE-----DALTLFNGMRRDGVPPNEVTFVALMSA 219

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                     + +H+  +K   V      +N+L+  Y+    + +A+  FD +P  ++I+
Sbjct: 220 LPADCPARGAQMVHAACLKAA-VSGEAAASNSLITMYAKARRMDDARMVFDLMPRREIIA 278

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF--ASRTGNVYFGKQIHGY 338
           WN+++S YA      DALELF  M  C   P+  +F   L+   A  T ++ +G+  H  
Sbjct: 279 WNAVISGYAQNGRCNDALELFSSMARCLT-PNETTFASVLSAVTAVETVSMAYGQMYHSR 337

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
              +GF   S +V  AL DMY K   +E S   F     RSL    +++++    G+   
Sbjct: 338 ALSMGFGD-SEYVAGALIDMYAKRGNLEESRKAFHETEQRSLIAWTAIISANARHGSYGA 396

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            + +FG M   G+  D V L   L A       + G   +    A   G E        +
Sbjct: 397 VMSLFGDMARSGVAPDGVVLLAVLTACRYGGMVDAGR-DIFDSMAADRGVELWPEHYSCV 455

Query: 459 MDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMN 491
           +D   R G +  + ++  ++P+ P+V    S++ 
Sbjct: 456 VDMLGRAGRLAEAEELMMRMPAGPSVSALQSLLG 489


>gi|347954524|gb|AEP33762.1| organelle transcript processing 82, partial [Hesperis matronalis]
          Length = 672

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 156/538 (28%), Positives = 290/538 (53%), Gaps = 41/538 (7%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +F+ +PE N   WN+M R     S P   L++Y  M + G+ PN  +F ++++ C+ 
Sbjct: 28  AISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAK 87

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF----------- 272
                EG+Q+H HV+KLG+ D++++V  +L+  Y+  G L +A+K FD            
Sbjct: 88  SKTFKEGQQIHGHVLKLGF-DLDLYVHTSLISMYAQNGRLEDAQKVFDRSSHRDVVSYTA 146

Query: 273 --------------------IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
                               IP+ DV+SWN+++S YA+      ALELF  M     +P 
Sbjct: 147 LITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKPD 206

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +    ++  +++G++  G+Q+H ++   GF   ++ + +AL D+Y KC  +E++  + 
Sbjct: 207 ESTMATVVSACAQSGSIELGRQVHSWINDHGFG-SNLKIVNALIDLYSKCGEVETACELL 265

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           E    + +   N+L+    H    K+A+ +F  M+  G   ++VT+ + L A +   + +
Sbjct: 266 EGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAID 325

Query: 433 LGSCRLLHCC---AIKSGFESNIA-VSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFT 487
           +G  R +H      +K    +N + +  SL+D Y++CG I+ + QV +    + ++  + 
Sbjct: 326 IG--RWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSLSTWN 383

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           +++ G++ +G    A D+   M + G+ PD +TF+ +L+ C+HSGM+  G+ +F SM+  
Sbjct: 384 AMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMRQD 443

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           Y I    +HY CMID+LG +G+  +AEE++   P   D ++W SLL++C++HGN  +G  
Sbjct: 444 YNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGES 503

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI-GHSLIEVNS 664
            A  L+++EP +   Y  +SN Y+  G++    +IR     + + + + G S IE++S
Sbjct: 504 FAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDKGMKKKVPGCSSIEIDS 561



 Score =  166 bits (420), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 137/542 (25%), Positives = 243/542 (44%), Gaps = 73/542 (13%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ ++  + S H +    A  +F+ +P  + + +N++  G      P  AL LY  M
Sbjct: 7   YAXSQLLEFCILSPHFDGLPYAISVFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVM 66

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM---RM 158
           +S G+  +  TF  +L  C+ +  + EG QIH  VL LGF L+LY+ + L+ +Y    R+
Sbjct: 67  ISLGLLPNFFTFPFLLKSCAKSKTFKEGQQIHGHVLKLGFDLDLYVHTSLISMYAQNGRL 126

Query: 159 GPSVRALD----------------------------LFDELPERNLATWNLMLRAFCELS 190
             + +  D                            +FDE+P +++ +WN M+  + E  
Sbjct: 127 EDAQKVFDRSSHRDVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETG 186

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + L ++ +M    V+P+  +   +V  C+    ++ G+Q+HS +   G+   N+ + 
Sbjct: 187 NYKKALELFKEMMKTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGF-GSNLKIV 245

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+D YS CG +  A +  + +   DVISWN+++  Y   +L  +AL LF  M    + 
Sbjct: 246 NALIDLYSKCGEVETACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGET 305

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL---GFDHGSVHVQSALTDMYGKCNVIES 367
           P+  + +  L   +  G +  G+ IH Y+ K         +  ++++L DMY KC  I++
Sbjct: 306 PNDVTMLSILPACAHLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDA 365

Query: 368 SVAVFE-SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           +  V + SA  RSL   N+++      G    A ++F  M   GI  D++T    L A S
Sbjct: 366 APQVSDSSAFNRSLSTWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACS 425

Query: 427 VSASANLG-------------SCRLLHC-CAI----KSGF-------------ESNIAVS 455
            S   +LG             + +L H  C I     SG              E +  + 
Sbjct: 426 HSGMLDLGRNIFRSMRQDYNITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIW 485

Query: 456 CSLMDAYSRCGHIELSHQVFE---KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           CSL+ A    G++EL     +   KI   N   +  + N Y+  G   E   +  ++  +
Sbjct: 486 CSLLKACKIHGNLELGESFAKKLIKIEPENPGSYVLLSNIYATAGKWNEVXKIRTLLNDK 545

Query: 513 GL 514
           G+
Sbjct: 546 GM 547



 Score =  142 bits (359), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 106/396 (26%), Positives = 188/396 (47%), Gaps = 38/396 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G++ SA+K+FDE+P +D+V++N +ISG  +  + K+AL L+ EM+
Sbjct: 140 DVVSYTALITGYASRGYIESAQKMFDEIPIKDVVSWNAMISGYAETGNYKKALELFKEMM 199

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K   ST ++V+S C+ +G    G Q+H  +   GFG NL I + L+DLY + G   
Sbjct: 200 KTNVKPDESTMATVVSACAQSGSIELGRQVHSWINDHGFGSNLKIVNALIDLYSKCGEVE 259

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A +L + L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 260 TACELLEGLSNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACA 319

Query: 223 IGMLLDEGKQLHSHVIK--LGWVDVNI-FVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
               +D G+ +H ++ K   G V  N   +  +L+D Y+ CG +  A +  D    +  +
Sbjct: 320 HLGAIDIGRWIHVYIDKKLKGVVVTNASSLRTSLIDMYAKCGDIDAAPQVSDSSAFNRSL 379

Query: 280 S-WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           S WN+++  +A +     A ++F RM+     P   +FV  L+  S +G +  G+     
Sbjct: 380 STWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGR----- 434

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
                                   N+  S    +   P   LE    ++  L HSG  K+
Sbjct: 435 ------------------------NIFRSMRQDYNITP--KLEHYGCMIDLLGHSGLFKE 468

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           A EM   M  E    D V   + LKA  +  +  LG
Sbjct: 469 AEEMINTMPMEP---DGVIWCSLLKACKIHGNLELG 501



 Score = 60.8 bits (146), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 44/192 (22%), Positives = 93/192 (48%), Gaps = 5/192 (2%)

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           VFE IP PN + +  +  G++ +     AL +  VMI  GL+P+  TF  +L  C  S  
Sbjct: 31  VFETIPEPNQLIWNIMFRGHALSSDPVSALKLYVVMISLGLLPNFFTFPFLLKSCAKSKT 90

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            KEGQ +   +  + G D D   ++ +I M  + G L+ A+++  ++    D + +++L+
Sbjct: 91  FKEGQQIHGHVLKL-GFDLDLYVHTSLISMYAQNGRLEDAQKVFDRS-SHRDVVSYTALI 148

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
                 G     +++ +   E+   D   ++ + + Y+E G ++ ++++ +  +   +  
Sbjct: 149 TGYASRGYIESAQKMFD---EIPIKDVVSWNAMISGYAETGNYKKALELFKEMMKTNVKP 205

Query: 654 DIGHSLIEVNSC 665
           D       V++C
Sbjct: 206 DESTMATVVSAC 217


>gi|255559100|ref|XP_002520572.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540232|gb|EEF41805.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 695

 Score =  275 bits (702), Expect = 7e-71,   Method: Compositional matrix adjust.
 Identities = 182/606 (30%), Positives = 312/606 (51%), Gaps = 13/606 (2%)

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K+F  M  RD++ +N ++S   K     +A+  +  M+  GIK S  +F +V    S+ G
Sbjct: 55  KVFKTMHKRDVIAWNTMVSWYVKTERYVEAIRQFRLMMKWGIKPSPVSFVNVFPAISSVG 114

Query: 125 FYTEGIQIHCRVLSLG--FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
            +     ++  +L LG  +  +L++ S  + +Y  +G       +FD   E++   WN M
Sbjct: 115 DFKNANVLYGMLLKLGNEYANDLFVVSSAISMYAELGCLDLCRKVFDSCLEKSAEVWNTM 174

Query: 183 LRAFCELSRPDEVLRMY-NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           +    + +   E + ++   MK E    + ++F   +   S    L  G+Q+H+  +K  
Sbjct: 175 IGGHIQNNSFLEGVYLFLQAMKTEHTILDDVTFLSALTAVSQLQCLGLGQQMHAFTMKNH 234

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            V +++ V NA++  YS C S+  + + F+ +P  DV+SWN+++S +    L  + L L 
Sbjct: 235 TV-LSVTVLNAILVMYSRCNSVQTSFEVFEKMPEKDVVSWNTMISGFIQNGLDEEGLMLV 293

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           + MQ         +    L+ AS   N   GKQ H Y+ + G     +   S L DMY K
Sbjct: 294 YEMQKQGFIADSVTVTSLLSAASNLRNREIGKQTHAYLIRHGIKFDGM--DSYLIDMYAK 351

Query: 362 CNVIESSVAVFES--APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
             +I  S  VFE+     R     N+++     +G ++ A   F  M+++ +  + VTL+
Sbjct: 352 SGLIRISQRVFENNNIQNRDQATWNAVIAGYTQNGLVEQAFITFRLMLEQNLRPNAVTLA 411

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A S   S NLG  + LH  +I+   + NI V  +L+D YS+ G I  +  VF +  
Sbjct: 412 SILPACSSLGSINLG--KQLHGVSIRYSLDQNIFVRTALVDMYSKSGAINYAESVFTQSS 469

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             N V +T+++ GY ++GMG  AL +   M + G+ PD +TF+ VL+ C+++G+V EG  
Sbjct: 470 ERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSACSYAGLVDEGLR 529

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRV 598
           +F SMK  + I     HY C+ DMLGR G + +A E ++Q    G  + +W SLL +CR+
Sbjct: 530 IFESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHVIEIWGSLLGACRL 589

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQV--SNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           HG+  +G  V+N L+E+  VD     QV  SN Y+E   +E   ++R++   + L +++G
Sbjct: 590 HGHIELGEEVSNRLLEMNSVDRLAGYQVLLSNMYAEEANWETVDKLRKSMREKGLRKEVG 649

Query: 657 HSLIEV 662
            S I+ 
Sbjct: 650 CSWIDT 655



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 56/194 (28%), Positives = 91/194 (46%), Gaps = 7/194 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   L P   T+ ++ P C+S+  ++    L     + +   NI+     +D + KSG 
Sbjct: 398 MLEQNLRPNAVTLASILPACSSLGSINLGKQLHGVSIRYSLDQNIFVRTALVDMYSKSGA 457

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +N A+ +F +   R+ VTY  +I G G+    + AL L+  M   GI+  A TF +VLS 
Sbjct: 458 INYAESVFTQSSERNSVTYTTMILGYGQHGMGENALSLFHSMKKSGIQPDAITFVAVLSA 517

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP--LVDLYMRMGPSVRALDLFDELPERN-- 175
           CS AG   EG++I    +   F +         + D+  R+G  + A +   +L E    
Sbjct: 518 CSYAGLVDEGLRIF-ESMKRDFKIQPSTAHYCCVADMLGRVGRVIEAYEFVKQLGEEGHV 576

Query: 176 LATWNLMLRAFCEL 189
           +  W  +L A C L
Sbjct: 577 IEIWGSLLGA-CRL 589


>gi|357135382|ref|XP_003569289.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950-like [Brachypodium distachyon]
          Length = 1054

 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 193/678 (28%), Positives = 348/678 (51%), Gaps = 34/678 (5%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC---QPNPQLNIYSSNRTIDDFVKSGH 59
           + +L P   T  +L  T TS+   SS +L   +    +     ++Y  +  +  F + G 
Sbjct: 262 AIELRPNEHTFGSLI-TATSLSSCSSGVLDQVFARVLKSGSSSDLYVGSALVSAFARHGM 320

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES----ASTFSS 115
           L+ AK +F  +  R+ VT N LI G  K    ++A+ ++      G ++S      TF  
Sbjct: 321 LDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIF-----MGTRDSFVVNTDTFVV 375

Query: 116 VLSVCSNAGFYTEGI----QIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +LS  +      +G+    ++H  +L  G   L + + + LV++Y + G   +A  +F  
Sbjct: 376 LLSAVAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRL 435

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           L  R+  +WN ++    +    +  +  Y  M+   + P+  +    +  C+   LL  G
Sbjct: 436 LCARDRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNFAAISGLSSCASLRLLTAG 495

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY-A 289
           +Q+H   +K G +D++  V+NALV  Y  CG+  E+ + F+ +   D++SWNSI+ +  +
Sbjct: 496 QQVHCDAVKWG-LDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVS 554

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
            +    +++E+F  M      P+  +FV  L+  S    +  GKQ+H  V K    HG++
Sbjct: 555 SHAPTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQVHAVVLK----HGAI 610

Query: 350 H---VQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLHSGNIKDAVEMFGF 405
               V +AL   Y K   ++S   +F S  GR      NS+++  +++G++++ ++    
Sbjct: 611 EDNAVDNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWL 670

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M+     LD  T S  L A +  A+   G    +H   I+S  ES++ V  +L+D YS+C
Sbjct: 671 MMHSNQMLDCCTFSIVLNACASVAALERG--MEMHAFGIRSQLESDVVVESALLDMYSKC 728

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G I+ + +VF  +   N   + S+++GY+R+G+G +AL++ E M + G  PD VTF+ VL
Sbjct: 729 GRIDYASKVFNSMSQKNEFSWNSMISGYARHGLGEKALEIFEEMQRNGACPDHVTFVSVL 788

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+H+G+V  G   F  M+  +GI    +HYSC+ID+LGRAG L K +E + + P   +
Sbjct: 789 SACSHAGLVDRGLDYFEMMED-HGILPHIEHYSCVIDLLGRAGKLLKIQEYINRMPMKPN 847

Query: 586 CMMWSSLLRSCRV--HGNEI-IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
            ++W ++L +CR    G+ I +G+  + +L+ELEP +   Y   SNFY+  G +E + + 
Sbjct: 848 TLIWRTVLVACRQSKDGDRIDLGKEASRMLLELEPQNPVNYVLASNFYAATGRWEDTAKA 907

Query: 643 RETALARKLTRDIGHSLI 660
           R       + ++ G S +
Sbjct: 908 RAAMGGAAMKKEAGQSWV 925



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 147/640 (22%), Positives = 295/640 (46%), Gaps = 41/640 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ SN  ++ + K   L +A+++FD M  R+ V++  L+SG        +A  ++  M+
Sbjct: 90  DLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSGITDEAFRVFKAML 149

Query: 103 SHG---IKESASTFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY-- 155
             G    + +  TF SVL  C +AG       +Q+H  V    +  N  + + L+ +Y  
Sbjct: 150 WEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYASNTTVCNALISMYGN 209

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCE----LSRPDEVLRMYNKMKAEGVEPNG 211
             +G  ++A  +FD  P R+L TWN ++  + +    +S     + M +   A  + PN 
Sbjct: 210 CSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMAMLHDDSAIELRPNE 269

Query: 212 LSFCYMVRG-----CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
            +F  ++       CS G+L     Q+ + V+K G    +++V +ALV  ++  G L EA
Sbjct: 270 HTFGSLITATSLSSCSSGVL----DQVFARVLKSG-SSSDLYVGSALVSAFARHGMLDEA 324

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI----RSFVEFLN- 321
           K  F  +   + ++ N ++          +A+ +F        R S      +FV  L+ 
Sbjct: 325 KDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFM-----GTRDSFVVNTDTFVVLLSA 379

Query: 322 ---FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
              F+     +  G+++HG++ + G     + + + L +MY KC  I+ +  VF     R
Sbjct: 380 VAEFSIPEDGLMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVFRLLCAR 439

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC-R 437
                N++++ L  +G  + A+  +  M    I          +  LS  AS  L +  +
Sbjct: 440 DRVSWNTIISVLDQNGFCEGAMMNYCMMRQGCISPSNF---AAISGLSSCASLRLLTAGQ 496

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN-GYSRN 496
            +HC A+K G + + +VS +L+  Y  CG    S ++F  +   ++V + SIM    S +
Sbjct: 497 QVHCDAVKWGLDLDTSVSNALVKMYGDCGARSESWEIFNSMAEHDIVSWNSIMGVMVSSH 556

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
               E++++   M++ GL P+KVTF+ +L+  +   +++ G+ V +++   +G   D   
Sbjct: 557 APTAESVEVFSNMMRSGLTPNKVTFVNLLSALSPLSVLELGKQV-HAVVLKHGAIEDNAV 615

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL- 615
            + ++    ++G +D  E+L     G  D + W+S++     +G+         ++M   
Sbjct: 616 DNALMSCYAKSGDMDSCEQLFSSMSGRRDAVSWNSMISGYIYNGHLQETMDCVWLMMHSN 675

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           + +D   +S V N  + +   E  M++    +  +L  D+
Sbjct: 676 QMLDCCTFSIVLNACASVAALERGMEMHAFGIRSQLESDV 715



 Score =  127 bits (319), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 224/480 (46%), Gaps = 24/480 (5%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           ++H  ++  G   +L++ + LV+LY +      A  +FD + ERN  +W  ++  +    
Sbjct: 77  RLHLELVKRGLTHDLFLSNHLVNLYAKGSRLAAARQVFDGMLERNAVSWTCLVSGYVLSG 136

Query: 191 RPDEVLRMYNKMKAEGVE---PNGLSFCYMVRGCSIGM--LLDEGKQLHSHVIKLGWVDV 245
             DE  R++  M  EG E   P   +F  ++R C      LL    Q+H  V K  +   
Sbjct: 137 ITDEAFRVFKAMLWEGSEFSRPTPFTFGSVLRACQDAGPDLLAFAVQVHGLVSKTIYAS- 195

Query: 246 NIFVANALVDFYSAC--GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           N  V NAL+  Y  C  G  ++A++ FD  PV D+I+WN+++S+YA    +     LF  
Sbjct: 196 NTTVCNALISMYGNCSVGLPLQAQQVFDTTPVRDLITWNALMSVYAKKGYVVSTFTLFMA 255

Query: 304 M----QLCRKRPSIRSFVEFLNFASRTG-NVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           M         RP+  +F   +   S +  +     Q+   V K G     ++V SAL   
Sbjct: 256 MLHDDSAIELRPNEHTFGSLITATSLSSCSSGVLDQVFARVLKSG-SSSDLYVGSALVSA 314

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE--V 416
           + +  +++ +  +F +   R+    N L+  L+     ++AV +F    D  +   +  V
Sbjct: 315 FARHGMLDEAKDIFINLKERNAVTLNGLIVGLVKQHCSEEAVGIFMGTRDSFVVNTDTFV 374

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVF 475
            L + +   S+     L   R +H   +++G  +  IA+S  L++ Y++CG I+ + +VF
Sbjct: 375 VLLSAVAEFSIPEDG-LMRGREVHGHILRTGLIDLKIALSNGLVNMYAKCGAIDKASRVF 433

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVLAGCNHSGMV 534
             + + + V + +I++   +NG    A+ M   M+++G I P     +  L+ C    ++
Sbjct: 434 RLLCARDRVSWNTIISVLDQNGFCEGAM-MNYCMMRQGCISPSNFAAISGLSSCASLRLL 492

Query: 535 KEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             GQ V  +++K  +G+D D    + ++ M G  G   ++ E+        D + W+S++
Sbjct: 493 TAGQQVHCDAVK--WGLDLDTSVSNALVKMYGDCGARSESWEIFNSM-AEHDIVSWNSIM 549


>gi|356495419|ref|XP_003516575.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Glycine max]
          Length = 666

 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 177/628 (28%), Positives = 320/628 (50%), Gaps = 11/628 (1%)

Query: 42  LNIYSSN----RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL 97
           L I+SS+    +    + +  H + A  LFD++    + ++N ++    +   P  AL L
Sbjct: 40  LGIFSSSNLCSKLATTYAQCHHASYASHLFDKLSQPCLFSWNAMMRMYVQIGRPFDALNL 99

Query: 98  YDEMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           + EM+  G       T+  V+  C +      G+ IH +    G+  + ++ + L+ +YM
Sbjct: 100 FVEMLGSGRTLPDKFTYPVVIKACGDLSLIDVGVGIHGQTFKFGYDSDTFVQNTLLAMYM 159

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
             G    A  +FD + ER + +WN M+  +   +  ++ + +Y +M   GVEP+  +   
Sbjct: 160 NAGEKEAAQLVFDPMQERTVISWNTMINGYFRNNCAEDAVNVYGRMMDVGVEPDCATVVS 219

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++  C +   ++ G+++H+ V + G+   NI V NALVD Y  CG + EA      +   
Sbjct: 220 VLPACGLLKNVELGREVHTLVQEKGFWG-NIVVRNALVDMYVKCGQMKEAWLLAKGMDDK 278

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV++W ++++ Y        AL L   MQ    +P+  S    L+       +  GK +H
Sbjct: 279 DVVTWTTLINGYILNGDARSALMLCGMMQCEGVKPNSVSIASLLSACGSLVYLNHGKCLH 338

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +  +   +   V V++AL +MY KCN    S  VF     +     N+L++  + +   
Sbjct: 339 AWAIRQKIE-SEVIVETALINMYAKCNCGNLSYKVFMGTSKKRTAPWNALLSGFIQNRLA 397

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           ++A+E+F  M+ + +  D  T ++ L A ++ A  +L     +HC  I+SGF   + V+ 
Sbjct: 398 REAIELFKQMLVKDVQPDHATFNSLLPAYAILA--DLQQAMNIHCYLIRSGFLYRLEVAS 455

Query: 457 SLMDAYSRCGHIELSHQVFEKI--PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
            L+D YS+CG +  +HQ+F  I     +++ +++I+  Y ++G G+ A+ +   M+Q G+
Sbjct: 456 ILVDIYSKCGSLGYAHQIFNIISLKDKDIIIWSAIIAAYGKHGHGKMAVKLFNQMVQSGV 515

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ VTF  VL  C+H+G+V EG  +FN M   + I +   HY+CMID+LGRAG L+ A 
Sbjct: 516 KPNHVTFTSVLHACSHAGLVNEGFSLFNFMLKQHQIISHVDHYTCMIDLLGRAGRLNDAY 575

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
            L++  P   +  +W +LL +C +H N  +G   A    +LEP +   Y  ++  Y+ +G
Sbjct: 576 NLIRTMPITPNHAVWGALLGACVIHENVELGEVAARWTFKLEPENTGNYVLLAKLYAAVG 635

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEV 662
            +  + ++R+      L +   HSLIEV
Sbjct: 636 RWGDAERVRDMVNEVGLRKLPAHSLIEV 663



 Score =  178 bits (452), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 227/467 (48%), Gaps = 25/467 (5%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +A+   S+L   S +  ++E  ++H  +L+LG   +  + S L   Y +   +  A  LF
Sbjct: 10  TAAQCESLLGKFSASQSHSETKRLHALILTLGIFSSSNLCSKLATTYAQCHHASYASHLF 69

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLL 227
           D+L +  L +WN M+R + ++ RP + L ++ +M   G   P+  ++  +++ C    L+
Sbjct: 70  DKLSQPCLFSWNAMMRMYVQIGRPFDALNLFVEMLGSGRTLPDKFTYPVVIKACGDLSLI 129

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           D G  +H    K G+ D + FV N L+  Y   G    A+  FD +    VISWN++++ 
Sbjct: 130 DVGVGIHGQTFKFGY-DSDTFVQNTLLAMYMNAGEKEAAQLVFDPMQERTVISWNTMING 188

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y   +   DA+ ++ RM      P   + V  L       NV  G+++H  V + GF  G
Sbjct: 189 YFRNNCAEDAVNVYGRMMDVGVEPDCATVVSVLPACGLLKNVELGREVHTLVQEKGF-WG 247

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           ++ V++AL DMY KC  ++ +  + +    + +    +L+   + +G+ + A+ + G M 
Sbjct: 248 NIVVRNALVDMYVKCGQMKEAWLLAKGMDDKDVVTWTTLINGYILNGDARSALMLCGMMQ 307

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            EG+  + V++++ L A       N G C  LH  AI+   ES + V  +L++ Y++C  
Sbjct: 308 CEGVKPNSVSIASLLSACGSLVYLNHGKC--LHAWAIRQKIESEVIVETALINMYAKCNC 365

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
             LS++VF          + ++++G+ +N + REA+++ + M+ + + PD  T       
Sbjct: 366 GNLSYKVFMGTSKKRTAPWNALLSGFIQNRLAREAIELFKQMLVKDVQPDHAT------- 418

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
                        FNS+   Y I AD Q    +   L R+G L + E
Sbjct: 419 -------------FNSLLPAYAILADLQQAMNIHCYLIRSGFLYRLE 452


>gi|224137432|ref|XP_002322556.1| predicted protein [Populus trichocarpa]
 gi|222867186|gb|EEF04317.1| predicted protein [Populus trichocarpa]
          Length = 702

 Score =  275 bits (702), Expect = 8e-71,   Method: Compositional matrix adjust.
 Identities = 181/624 (29%), Positives = 307/624 (49%), Gaps = 68/624 (10%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  +VK G +N AK+LFDEMP ++++++N +++G  + R  +  L  ++EM    + 
Sbjct: 106 NAMISGYVKKGRVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVV 165

Query: 108 ES---ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
                   F  V  + S   F+ E  +            N+     ++  + R G  + +
Sbjct: 166 SWNLMVDGFIQVGDLDSAWKFFQETQKP-----------NVVSWVTMLSGFARNGNILES 214

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG-CSI 223
             LFD++P RN+ +WN M+ A+ +    DE  R++ +M     E + +S+  M+ G   I
Sbjct: 215 RRLFDQMPSRNIVSWNAMISAYVQRCEIDEASRLFEEMP----ERDSVSWTTMINGYVRI 270

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
           G L DE ++L + +        NI    A++  Y  C  + EA++ FD I   DV+ WN+
Sbjct: 271 GKL-DEARELLNEMPYR-----NIGAQTAMISGYIQCNKVDEARRFFDEIGTWDVVCWNA 324

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +++ YA +  I +AL L  RM               +N    T N               
Sbjct: 325 MIAGYAHHGRINEALCLSKRM---------------VNKDMVTWNT-------------- 355

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                      +   Y +   ++ +V +FE    R L   NSL+   + +G   DA++ F
Sbjct: 356 -----------MISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSF 404

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M  EG   D+++ +  L + +  A+  +G+   LH   +K G+ + + V+ +L+  Y+
Sbjct: 405 ALMGHEGKKPDQLSFACGLSSCATIAALQVGN--QLHQVVVKGGYLNYLVVNNALITMYA 462

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG I  +  VF  I   +V+ + S++ GY+ NG G+EAL + E M   G+ PD+VTF+ 
Sbjct: 463 KCGRILEAGLVFNGICHADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIG 522

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L+ CNH+GMV  G  +F  M  VY I+   +HY+CM+D+LGR G LD+A E+++     
Sbjct: 523 ILSACNHAGMVDHGLKLFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEAFEIVRGMKVK 582

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W +LL +CR HGN  +GR  A+ L E EP   + Y  +SN ++E   +    ++R
Sbjct: 583 ATAGVWGALLGACRAHGNLELGRLAAHKLSEFEPHKTSNYVLLSNIHAEANRWNEVQEVR 642

Query: 644 ETALARKLTRDIGHSLIEV-NSCH 666
               A    ++ G S +EV N  H
Sbjct: 643 MLMNASSTVKEPGCSWVEVRNQVH 666



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 95/417 (22%), Positives = 177/417 (42%), Gaps = 61/417 (14%)

Query: 32  LDS---YCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           LDS   + Q   + N+ S    +  F ++G++  +++LFD+MP+R++V++N +IS   + 
Sbjct: 180 LDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNIVSWNAMISAYVQR 239

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCS--------------NAGFYTEGIQ--I 132
               +A  L++EM         +  +  + +                N G  T  I   I
Sbjct: 240 CEIDEASRLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQTAMISGYI 299

Query: 133 HCRVLSLGFGLNLYIGS-------PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
            C  +         IG+        ++  Y   G    AL L   +  +++ TWN M+  
Sbjct: 300 QCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMVTWNTMISC 359

Query: 186 FCELSRPDEVLRMYNKMKA-------------------------------EGVEPNGLSF 214
           + ++ + D  ++++ +M                                 EG +P+ LSF
Sbjct: 360 YAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEGKKPDQLSF 419

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
              +  C+    L  G QLH  V+K G+++  + V NAL+  Y+ CG ++EA   F+ I 
Sbjct: 420 ACGLSSCATIAALQVGNQLHQVVVKGGYLNY-LVVNNALITMYAKCGRILEAGLVFNGIC 478

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DVISWNS++  YA      +AL+LF  M      P   +F+  L+  +  G V  G +
Sbjct: 479 HADVISWNSLIGGYAINGYGKEALKLFEEMASEGMAPDEVTFIGILSACNHAGMVDHGLK 538

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           +   ++K+          + + D+ G+   ++ +   FE   G  ++    +  +LL
Sbjct: 539 LFKCMSKVYAIEPLAEHYACMVDLLGRVGRLDEA---FEIVRGMKVKATAGVWGALL 592



 Score = 80.5 bits (197), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/435 (18%), Positives = 173/435 (39%), Gaps = 86/435 (19%)

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + E+N  T+N M+  + +  R +    +++KM       N +S+  MV G       DE 
Sbjct: 1   MAEKNTVTYNSMISVYAKNGRINAARNLFDKMP----RRNLVSWNTMVSGYLHNGKFDEA 56

Query: 231 KQLHSHVIKLGWVDVNIFVA-----------------------------NALVDFYSACG 261
            +L   + +       + +                              NA++  Y   G
Sbjct: 57  YKLFVIMPRRDLFSWTLMITCYTRNGEVEKARELFDSLPCSYRKGVACWNAMISGYVKKG 116

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ---------------- 305
            + EAK+ FD +PV ++ISWNS+++ Y     +   LE F  M                 
Sbjct: 117 RVNEAKRLFDEMPVKNLISWNSMLAGYTQNRKMRLGLEFFNEMDERDVVSWNLMVDGFIQ 176

Query: 306 -----------LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
                         ++P++ S+V  L+  +R GN+   +++   +         V   + 
Sbjct: 177 VGDLDSAWKFFQETQKPNVVSWVTMLSGFARNGNILESRRLFDQMPSRNI----VSWNAM 232

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           ++    +C + E+S  +FE  P R      +++   +  G + +A E+   M    IG  
Sbjct: 233 ISAYVQRCEIDEAS-RLFEEMPERDSVSWTTMINGYVRIGKLDEARELLNEMPYRNIGAQ 291

Query: 415 EVTLSTTLKALSVSASA----NLGSCRLLHCCAIKSGF-----------------ESNIA 453
              +S  ++   V  +      +G+  ++   A+ +G+                   ++ 
Sbjct: 292 TAMISGYIQCNKVDEARRFFDEIGTWDVVCWNAMIAGYAHHGRINEALCLSKRMVNKDMV 351

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
              +++  Y++ G ++ + ++FE++   ++V + S++ G+  NG   +AL    +M   G
Sbjct: 352 TWNTMISCYAQVGQMDRAVKIFEEMGERDLVSWNSLIAGFMLNGQNLDALKSFALMGHEG 411

Query: 514 LIPDKVTFLCVLAGC 528
             PD+++F C L+ C
Sbjct: 412 KKPDQLSFACGLSSC 426



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 42/196 (21%), Positives = 94/196 (47%), Gaps = 16/196 (8%)

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           E N     S++  Y++ G I  +  +F+K+P  N+V + ++++GY  NG   EA  +  +
Sbjct: 3   EKNTVTYNSMISVYAKNGRINAARNLFDKMPRRNLVSWNTMVSGYLHNGKFDEAYKLFVI 62

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC---MIDMLG 565
           M +R L    +   C       +G V++ + +F+S+   Y     R+  +C   MI    
Sbjct: 63  MPRRDLFSWTLMITCY----TRNGEVEKARELFDSLPCSY-----RKGVACWNAMISGYV 113

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           + G +++A+ L  + P   + + W+S+L     +    +G    N   E++  D   ++ 
Sbjct: 114 KKGRVNEAKRLFDEMP-VKNLISWNSMLAGYTQNRKMRLGLEFFN---EMDERDVVSWNL 169

Query: 626 VSNFYSEIGEFEVSMQ 641
           + + + ++G+ + + +
Sbjct: 170 MVDGFIQVGDLDSAWK 185


>gi|225456890|ref|XP_002277458.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 698

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 151/535 (28%), Positives = 295/535 (55%), Gaps = 6/535 (1%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR--ALDLFDELPERNLATWNLMLRAFCE 188
           +IH  ++     L   +   L++    + P+    A+ +F ++ E +   +N+M+R F  
Sbjct: 42  EIHAHLIKTRLLLKPKVAENLLESAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTL 101

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
              P E + ++ +M    V+P+  +F  +++ CS    L EG+Q+H+ ++K G+   + F
Sbjct: 102 KQSPHEAILLFKEMHENSVQPDEFTFPCILKVCSRLQALSEGEQIHALIMKCGF-GSHGF 160

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V N L+  Y+ CG +  A++ FD +   +V +WNS+ + Y       + ++LF  M    
Sbjct: 161 VKNTLIHMYANCGEVEVARRVFDEMSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELD 220

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            R    + V  L    R  ++  G+ I+ YV + G   G+  + ++L DMY KC  ++++
Sbjct: 221 IRFDEVTLVSVLTACGRLADLELGEWINRYVEEKGLK-GNPTLITSLVDMYAKCGQVDTA 279

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F+    R +   +++++    +   ++A+++F  M    I  +E+T+ + L + +V 
Sbjct: 280 RRLFDQMDRRDVVAWSAMISGYSQASRCREALDLFHEMQKANIDPNEITMVSILSSCAVL 339

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            +   G  + +H    K   +  + +  +LMD Y++CG +E S +VF K+P  NV+ +T 
Sbjct: 340 GALETG--KWVHFFIKKKRMKLTVTLGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTV 397

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ G + NG G++AL+   +M+++ + P+ VTF+ VL+ C+H+G+V EG+ +F SM   +
Sbjct: 398 LIQGLASNGQGKKALEYFYLMLEKNVEPNDVTFIGVLSACSHAGLVDEGRDLFVSMSRDF 457

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           GI+   +HY CM+D+LGRAG++++A + ++  P   + ++W +LL SC+VH N  IG   
Sbjct: 458 GIEPRIEHYGCMVDILGRAGLIEEAFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEES 517

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
              L+ LEP     Y  +SN Y+ +G +E ++++R     + + +  G SLIE++
Sbjct: 518 LKQLIILEPTHSGDYILLSNIYASVGRWEDALKVRGEMKEKGIKKTPGCSLIELD 572



 Score =  188 bits (477), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 134/523 (25%), Positives = 253/523 (48%), Gaps = 23/523 (4%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSN----------RTIDDFVK 56
           LP +   T  A T  S+ P +   L+   C+    LN   ++          +  ++ ++
Sbjct: 5   LPLLPAKTPTAKTSISLFPENPKTLILEQCKTIRDLNEIHAHLIKTRLLLKPKVAENLLE 64

Query: 57  SG------HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           S        ++ A  +F ++   D   YN++I G    + P +A+ L+ EM  + ++   
Sbjct: 65  SAAILLPTSMDYAVSIFRQIDEPDSPAYNIMIRGFTLKQSPHEAILLFKEMHENSVQPDE 124

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF  +L VCS     +EG QIH  ++  GFG + ++ + L+ +Y   G    A  +FDE
Sbjct: 125 FTFPCILKVCSRLQALSEGEQIHALIMKCGFGSHGFVKNTLIHMYANCGEVEVARRVFDE 184

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + ERN+ TWN M   + +    +EV++++++M    +  + ++   ++  C     L+ G
Sbjct: 185 MSERNVRTWNSMFAGYTKSGNWEEVVKLFHEMLELDIRFDEVTLVSVLTACGRLADLELG 244

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           + ++ +V + G +  N  +  +LVD Y+ CG +  A++ FD +   DV++W++++S Y+ 
Sbjct: 245 EWINRYVEEKG-LKGNPTLITSLVDMYAKCGQVDTARRLFDQMDRRDVVAWSAMISGYSQ 303

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +AL+LF  MQ     P+  + V  L+  +  G +  GK +H ++ K      +V 
Sbjct: 304 ASRCREALDLFHEMQKANIDPNEITMVSILSSCAVLGALETGKWVHFFIKKKRMKL-TVT 362

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           + +AL D Y KC  +ESS+ VF   P +++     L+  L  +G  K A+E F  M+++ 
Sbjct: 363 LGTALMDFYAKCGSVESSIEVFGKMPVKNVLSWTVLIQGLASNGQGKKALEYFYLMLEKN 422

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  ++VT    L A S +   + G   L    +   G E  I     ++D   R G IE 
Sbjct: 423 VEPNDVTFIGVLSACSHAGLVDEGR-DLFVSMSRDFGIEPRIEHYGCMVDILGRAGLIEE 481

Query: 471 SHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDMLEVM 509
           + Q  + +P  PN V + +++     +    +G E+L  L ++
Sbjct: 482 AFQFIKNMPIQPNAVIWRTLLASCKVHKNVEIGEESLKQLIIL 524


>gi|357122034|ref|XP_003562721.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g25970-like [Brachypodium distachyon]
          Length = 689

 Score =  274 bits (701), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 188/620 (30%), Positives = 314/620 (50%), Gaps = 26/620 (4%)

Query: 60  LNSAKKLFDEMPARDMVTYN-LLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           L +A+++FDE+P  D  ++N LL +      HP  A  L   M + G+  +     S L 
Sbjct: 41  LAAARRVFDEIPRPDAASWNSLLTAHVSAGAHPA-AWCLLRAMHAQGVAANTFALGSSLR 99

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
             + A     G Q+       G   N++  S L+ +Y + G    A  +FD +PERN  +
Sbjct: 100 SAAAARCPALGAQLQSLAFKSGLADNVFAASALLHMYAKCGRVRDARRVFDGMPERNTVS 159

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK-----QL 233
           WN ++  + E  +  + L ++  M+ E + P+  +F  ++         D+       QL
Sbjct: 160 WNALIAGYVESGKVLQALELFINMETERLVPDEATFAALLTA------FDDSNYFLMHQL 213

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYADYD 292
           H  ++K G   + + V+NA +  YS CG+L E+++ FD I    D+ISWN+++  Y  + 
Sbjct: 214 HGKIVKYG-SALGLTVSNAAITAYSQCGALAESRRIFDQIGDSRDLISWNAMLGAYTYHG 272

Query: 293 LIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           + +DA+  F RM +    +  + SF   ++      + + G+ IHG V K G + G+  V
Sbjct: 273 MDYDAMGFFVRMIRESGVQLDMYSFTSIISTCPEHDD-HQGRAIHGLVIKNGLE-GATPV 330

Query: 352 QSALTDMY----GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            +AL  MY    G C ++E +   F+S   +     NS++T         DA+  F  M 
Sbjct: 331 CNALIAMYTRISGNC-MMEDACKCFDSLLIKDTVSWNSMLTGYSQHNLSADALRFFRCMQ 389

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
              I  DE   S  L++ S  A   LG  R +H   I SGF SN  VS SL+  YS+ G 
Sbjct: 390 SANIRCDEYAFSAALRSCSELAVLQLG--RQIHGSIIHSGFASNNFVSSSLIFMYSKSGI 447

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           ++ + + FE+    + V + S++ GY+++G       +   M++  +  D VTF+ ++  
Sbjct: 448 LDDAKKSFEEADKGSSVPWNSMIFGYAQHGHAHIVHSLFNEMVELKVPLDHVTFVGLITS 507

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+H+G+V EG  + N+M++ YGI    +HY+C +D+ GRAG L+KA+EL+   P   D M
Sbjct: 508 CSHAGLVDEGSEILNAMETRYGIPLRMEHYACGVDLYGRAGQLEKAKELIDSMPFEPDAM 567

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           +W +LL +CR+HGN  +   VA+ L+  EP   + Y  +S+ YS +G +     ++    
Sbjct: 568 VWMTLLGACRIHGNMELASEVASHLLVSEPKQHSTYILLSSMYSGLGMWSDRAIVQREMK 627

Query: 648 ARKLTRDIGHSLIEV-NSCH 666
            R L++  G S IEV N  H
Sbjct: 628 NRGLSKVPGWSWIEVKNEVH 647



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 115/456 (25%), Positives = 223/456 (48%), Gaps = 11/456 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+++++  +  + K G +  A+++FD MP R+ V++N LI+G  +     QAL L+  M 
Sbjct: 125 NVFAASALLHMYAKCGRVRDARRVFDGMPERNTVSWNALIAGYVESGKVLQALELFINME 184

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  +    +TF+++L+   ++ ++    Q+H +++  G  L L + +  +  Y + G   
Sbjct: 185 TERLVPDEATFAALLTAFDDSNYFLMH-QLHGKIVKYGSALGLTVSNAAITAYSQCGALA 243

Query: 163 RALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRG 220
            +  +FD++ + R+L +WN ML A+       + +  + +M +  GV+ +  SF  ++  
Sbjct: 244 ESRRIFDQIGDSRDLISWNAMLGAYTYHGMDYDAMGFFVRMIRESGVQLDMYSFTSIIST 303

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS---LIEAKKSFDFIPVDD 277
           C       +G+ +H  VIK G ++    V NAL+  Y+       + +A K FD + + D
Sbjct: 304 CP-EHDDHQGRAIHGLVIKNG-LEGATPVCNALIAMYTRISGNCMMEDACKCFDSLLIKD 361

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +SWNS+++ Y+ ++L  DAL  F  MQ    R    +F   L   S    +  G+QIHG
Sbjct: 362 TVSWNSMLTGYSQHNLSADALRFFRCMQSANIRCDEYAFSAALRSCSELAVLQLGRQIHG 421

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +   GF   +  V S+L  MY K  +++ +   FE A   S    NS++      G+  
Sbjct: 422 SIIHSGFASNNF-VSSSLIFMYSKSGILDDAKKSFEEADKGSSVPWNSMIFGYAQHGHAH 480

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
               +F  MV+  + LD VT    + + S +   + GS  +L+    + G    +     
Sbjct: 481 IVHSLFNEMVELKVPLDHVTFVGLITSCSHAGLVDEGS-EILNAMETRYGIPLRMEHYAC 539

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
            +D Y R G +E + ++ + +P  P+ + + +++  
Sbjct: 540 GVDLYGRAGQLEKAKELIDSMPFEPDAMVWMTLLGA 575


>gi|449438556|ref|XP_004137054.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
 gi|449479088|ref|XP_004155501.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g16860-like [Cucumis sativus]
          Length = 855

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 204/708 (28%), Positives = 334/708 (47%), Gaps = 61/708 (8%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNR----TIDDFVKSGHLNSAKKLF 67
           T TT  PT   I  L     L +    + Q+ ++         +  +++ G    A  L 
Sbjct: 23  TFTTSPPTIPLISLLRQCKTLINAKLAHQQIFVHGFTEMFSYAVGAYIECGASAEAVSLL 82

Query: 68  DEM-PARDMV-TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
             + P+   V  +N LI    K       L  Y +M   G      TF  VL  C     
Sbjct: 83  QRLIPSHSTVFWWNALIRRSVKLGLLDDTLGFYCQMQRLGWLPDHYTFPFVLKACGEIPS 142

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER---NLATWNLM 182
              G  +H  V + G G N++I + +V +Y R G    A  +FDE+ ER   ++ +WN +
Sbjct: 143 LRHGASVHAIVCANGLGSNVFICNSIVAMYGRCGALDDAHQMFDEVLERKIEDIVSWNSI 202

Query: 183 LRAFCELSRPDEVLRMYNKMKAE---GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           L A+ +  +    LR+  +M       + P+ ++   ++  C+    L  GKQ+H   ++
Sbjct: 203 LAAYVQGGQSRTALRIAFRMGNHYSLKLRPDAITLVNILPACASVFALQHGKQVHGFSVR 262

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD--------- 290
            G VD ++FV NALV  Y+ C  + EA K F+ I   DV+SWN++V+ Y+          
Sbjct: 263 NGLVD-DVFVGNALVSMYAKCSKMNEANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALS 321

Query: 291 -----------YDLI---------------FDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
                       D+I               F+AL++F +MQL    P++ +    L+  +
Sbjct: 322 LFKMMQEEDIKLDVITWSAVIAGYAQKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCA 381

Query: 325 RTGNVYFGKQIHGYVTK----LGFD--HGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
             G + +GKQ H YV K    L ++     + V + L DMY KC     + ++F+S  G+
Sbjct: 382 SVGALLYGKQTHAYVIKNILNLNWNDKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGK 441

Query: 379 --SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL--DEVTLSTTLKALSVSASANLG 434
             ++     ++      G   DA+++F  +  +   L  +  TLS  L A +      LG
Sbjct: 442 DKNVVTWTVMIGGYAQHGEANDALKLFAQIFKQKTSLKPNAFTLSCALMACARLGELRLG 501

Query: 435 SCRLLHCCAIKSGFESNIA-VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
             R LH  A+++  ES +  V   L+D YS+ G I+ +  VF+ +   NVV +TS+M GY
Sbjct: 502 --RQLHAYALRNENESEVLYVGNCLIDMYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGY 559

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
             +G G EAL + + M + G   D +TFL VL  C+HSGMV +G + F+ M   +GI   
Sbjct: 560 GMHGRGEEALHLFDQMQKLGFAVDGITFLVVLYACSHSGMVDQGMIYFHDMVKGFGITPG 619

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
            +HY+CM+D+LGRAG L++A EL++        ++W +LL + R+H N  +G   A+ L 
Sbjct: 620 AEHYACMVDLLGRAGRLNEAMELIKNMSMEPTAVVWVALLSASRIHANIELGEYAASKLT 679

Query: 614 ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           EL   +   Y+ +SN Y+    ++   +IR       + +  G S I+
Sbjct: 680 ELGAENDGSYTLLSNLYANARRWKDVARIRSLMKHTGIRKRPGCSWIQ 727



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/448 (22%), Positives = 201/448 (44%), Gaps = 52/448 (11%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLN 61
           S KL P   T+  + P C S+  L     +  +   N  ++ ++  N  +  + K   +N
Sbjct: 227 SLKLRPDAITLVNILPACASVFALQHGKQVHGFSVRNGLVDDVFVGNALVSMYAKCSKMN 286

Query: 62  SAKKLFDEMPARDMVTYNLLISG---CGKFR----------------------------- 89
            A K+F+ +  +D+V++N +++G    G F                              
Sbjct: 287 EANKVFEGIKKKDVVSWNAMVTGYSQIGSFDSALSLFKMMQEEDIKLDVITWSAVIAGYA 346

Query: 90  ---HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-- 144
              H  +AL ++ +M  +G++ +  T +S+LS C++ G    G Q H  V+     LN  
Sbjct: 347 QKGHGFEALDVFRQMQLYGLEPNVVTLASLLSGCASVGALLYGKQTHAYVIKNILNLNWN 406

Query: 145 -----LYIGSPLVDLYMRMGPSVRALDLFD--ELPERNLATWNLMLRAFCELSRPDEVLR 197
                L + + L+D+Y +      A  +FD  E  ++N+ TW +M+  + +    ++ L+
Sbjct: 407 DKEDDLLVLNGLIDMYAKCKSYRVARSIFDSIEGKDKNVVTWTVMIGGYAQHGEANDALK 466

Query: 198 MYNKM--KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           ++ ++  +   ++PN  +    +  C+    L  G+QLH++ ++       ++V N L+D
Sbjct: 467 LFAQIFKQKTSLKPNAFTLSCALMACARLGELRLGRQLHAYALRNENESEVLYVGNCLID 526

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            YS  G +  A+  FD + + +V+SW S+++ Y  +    +AL LF +MQ         +
Sbjct: 527 MYSKSGDIDAARAVFDNMKLRNVVSWTSLMTGYGMHGRGEEALHLFDQMQKLGFAVDGIT 586

Query: 316 FVEFLNFASRTGNVYFGK-QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           F+  L   S +G V  G    H  V   G   G+ H  + + D+ G+   +  ++ + ++
Sbjct: 587 FLVVLYACSHSGMVDQGMIYFHDMVKGFGITPGAEHY-ACMVDLLGRAGRLNEAMELIKN 645

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEM 402
               S+E    +  +LL +  I   +E+
Sbjct: 646 M---SMEPTAVVWVALLSASRIHANIEL 670


>gi|302807080|ref|XP_002985271.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
 gi|300147099|gb|EFJ13765.1| hypothetical protein SELMODRAFT_121697 [Selaginella moellendorffii]
          Length = 744

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 179/622 (28%), Positives = 323/622 (51%), Gaps = 17/622 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G +  A++ FD M  R++V+++ +I+   +  HP  AL L+  M   G+K +A TF
Sbjct: 2   YNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAITF 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            SVL  C++ G    G  IH R+++ G  G ++ +G+ +V++Y + G    A ++F+ + 
Sbjct: 62  VSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERME 121

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            +N  TWN M+ A     R  E   +  +M  +G+ PN ++   ++  C+    +  G+ 
Sbjct: 122 AKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGRI 181

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  V   G ++ +  VANALV+ Y  CG L  A+ + + I   D ISW ++++ YA + 
Sbjct: 182 VHEIVAGEG-LESDNAVANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHG 240

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
               A+ +  RM     +    +FV  L        +  G++IH  + + G +   V +Q
Sbjct: 241 HGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPV-LQ 299

Query: 353 SALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
           +AL DMYGKC   +++   F+     R +   N+L+ + +     K+ + +F  M  +G+
Sbjct: 300 TALVDMYGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGV 359

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV------SCSLMDAYSRC 465
             D VT  + L A +  A+  LG  RL H   ++ G     AV      + S+++ Y++C
Sbjct: 360 APDAVTFLSILDACASLAALGLG--RLTHSRMLERGLFDRQAVASADLLTTSVINMYAKC 417

Query: 466 GHIELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           G +  +   F K     + +VV +++++  YS+ G+  EAL     M Q G+ PD V+F+
Sbjct: 418 GSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFV 477

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
             +AGC+HSG+V+E    F S++  +GI     H++C++D+L RAG + +AE L+++ P 
Sbjct: 478 SAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPL 537

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
           G     W +LL +CR +G+    RRVA  L  L     + YS +++ +    +++     
Sbjct: 538 GAHHSTWMTLLSACRTYGDLERARRVAARLASLRS--GSAYSLLASVFCLSRKWDDVRNA 595

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R++ + R      G S IE+N+
Sbjct: 596 RQSLVERGFITQPGCSWIEINN 617



 Score =  171 bits (432), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 219/452 (48%), Gaps = 19/452 (4%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y R G  + A   FD +  RN+ +W+ M+ A+ +   P + L ++ +M  EGV+ N ++
Sbjct: 1   MYNRCGSVIHARRAFDAMVVRNVVSWSAMIAAYAQRGHPADALELFVRMDHEGVKANAIT 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  ++  C+    +  GK +H  ++  G +  ++ + N +V+ Y  CG +  A++ F+ +
Sbjct: 61  FVSVLDACASLGAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERM 120

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              + ++WN++++  + +D   +A  L   M L   RP+  + V  ++  +   ++  G+
Sbjct: 121 EAKNTVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSISRGR 180

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            +H  V   G +  +  V +AL ++YGKC  + ++    E    R      +L+ +    
Sbjct: 181 IVHEIVAGEGLESDNA-VANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARH 239

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G+ K A+ +   M  EG+ LD  T    L++    A+  LG    +H    +SG E +  
Sbjct: 240 GHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGE--EIHDRLAESGIELDPV 297

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
           +  +L+D Y +CG+ + + + F+++    +V  + +++  Y     G+E L +   M  +
Sbjct: 298 LQTALVDMYGKCGNPDAARRAFDRMRDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQ 357

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM--KSVYGIDADRQHY-------SCMIDM 563
           G+ PD VTFL +L  C     +  G+L  + M  + ++    DRQ         + +I+M
Sbjct: 358 GVAPDAVTFLSILDACASLAALGLGRLTHSRMLERGLF----DRQAVASADLLTTSVINM 413

Query: 564 LGRAGIL--DKAEELLQQTPGGGDCMMWSSLL 593
             + G L   KAE    +     D + WS+++
Sbjct: 414 YAKCGSLADAKAEFAKARRARASDVVAWSAMV 445



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 204/451 (45%), Gaps = 21/451 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++   N  ++ + K G ++ A+++F+ M A++ VT+N +I+ C +    K+A  L  EM 
Sbjct: 93  DVILGNTIVNMYGKCGEVDLAREVFERMEAKNTVTWNTMIAACSRHDRYKEAFALLGEMD 152

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++ +  T  SV+  C+     + G  +H  V   G   +  + + LV+LY + G   
Sbjct: 153 LDGLRPNKITLVSVIDACAWMQSISRGRIVHEIVAGEGLESDNAVANALVNLYGKCGKLR 212

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A    + +  R+  +W  +L A+         + +  +M  EGV+ +  +F  ++  C 
Sbjct: 213 AARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCV 272

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISW 281
               L  G+++H  + + G ++++  +  ALVD Y  CG+   A+++FD +  V DV  W
Sbjct: 273 AIAALALGEEIHDRLAESG-IELDPVLQTALVDMYGKCGNPDAARRAFDRMRDVRDVTVW 331

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++++ Y   D   + L +F RM L    P   +F+  L+  +    +  G+  H  + +
Sbjct: 332 NALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLE 391

Query: 342 LG-FDHGSVHVQSALT----DMYGKCNVIESSVAVF---ESAPGRSLECCNSLMTSLLHS 393
            G FD  +V     LT    +MY KC  +  + A F     A    +   ++++ +    
Sbjct: 392 RGLFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQF 451

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS-----ASANLGSCRLLHCCAIKSGF 448
           G  ++A+  F  M  EG+  D V+  + +   S S     A A   S R  H      G 
Sbjct: 452 GLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDH------GI 505

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
               A    L+D  SR G I  +  +  + P
Sbjct: 506 APTEAHFACLVDLLSRAGWIREAEALMRRAP 536


>gi|359494657|ref|XP_002264130.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
          Length = 1724

 Score =  274 bits (700), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 157/553 (28%), Positives = 299/553 (54%), Gaps = 5/553 (0%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           S +  +L +C +     +G  IH  +++ GFG +L++ + L+  Y+++G  + A ++FD 
Sbjct: 31  SLYLKILQLCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDG 90

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +PER++ +W  M+  + +  R ++   +++ M+  GV+ N  ++   +R C+    LD G
Sbjct: 91  MPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMG 150

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
            Q+   + K  +V+ N+FV +ALVDF+S CG + +A   F  +   DV+SWN+++  YA 
Sbjct: 151 IQVQGCIQKGRFVE-NLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAV 209

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                D+  +F  M      P   +    L  ++  G +    QIHG +T+LG+    + 
Sbjct: 210 QGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDI- 268

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK-DAVEMFGFMVDE 409
           V   L + Y K   + S+  + +    + L    +L+T   H G    DA+++F  M   
Sbjct: 269 VTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQM 328

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            IG+D+V L + L   +  AS  LG+   +H  A+K     ++A+  +L+D Y++ G IE
Sbjct: 329 NIGMDDVILCSMLNICANLASFALGT--QIHAFALKYQPSYDVAMGNALIDMYAKSGEIE 386

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            + + F+++   NV+ +TS+++GY+++G G  A+ + + M  +G  P+ VTFL +L  C+
Sbjct: 387 DAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACS 446

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H+G+  EG   FN+M + Y I    +HYSCM+D+  R G+L++A  LL +     +  +W
Sbjct: 447 HTGLTAEGCECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLW 506

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            ++L +  ++G   +G+  A+ L  ++P +   Y  +++ YS  G ++ + +IR+    R
Sbjct: 507 GAILGASSIYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEER 566

Query: 650 KLTRDIGHSLIEV 662
              ++ G+S  + 
Sbjct: 567 STKKNAGYSFFQA 579



 Score =  256 bits (655), Expect = 2e-65,   Method: Compositional matrix adjust.
 Identities = 179/626 (28%), Positives = 332/626 (53%), Gaps = 23/626 (3%)

Query: 47   SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
            +N  I  F     +  A  +FD M   D++++N +IS        +++L  +  M     
Sbjct: 985  ANSLISMFSSFSSVEEACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHN 1044

Query: 107  KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
            + +++T SS+LSVCS+      G  IH  V+ LG   N+ I + L+ LY   G S  A  
Sbjct: 1045 ETNSTTLSSLLSVCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAEL 1104

Query: 167  LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
            +F  + ER+L +WN M+  + +  +  + L++  ++   G   N ++F   +  CS    
Sbjct: 1105 VFQAMTERDLISWNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPEC 1164

Query: 227  LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
            L E K +H+ +I  G+ D  + V NALV  Y   G ++EAKK    +P  D ++WN+++ 
Sbjct: 1165 LIESKIVHALIIVAGFHDF-LIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIG 1223

Query: 287  IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF----ASRTGNVYFGKQIHGYVTKL 342
             +A+ +   +A++ +   +L R++    +++  ++     ++    +  G  IH ++   
Sbjct: 1224 GHAENEEPNEAVKAY---KLIREKGIPANYITMVSVLGACSAPDDLLKHGMPIHAHIVLT 1280

Query: 343  GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            GF+    +V+++L  MY KC  + SS  +F+    +S    N+++ +  H G  ++A+++
Sbjct: 1281 GFESDD-YVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKI 1339

Query: 403  FGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSCSLM 459
            FG M + G+ LD+ + S  L     +A+ANL      + LH   IK GFES++ V+ + M
Sbjct: 1340 FGEMRNVGVNLDQFSFSGGL-----AATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAM 1394

Query: 460  DAYSRCGHIELSHQVFEKIPSP---NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
            D Y +CG +   H V + +P P   + + +  +++ ++R+G  ++A +    M++ G  P
Sbjct: 1395 DMYGKCGEM---HDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKP 1451

Query: 517  DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
            D VTF+ +L+ CNH G+V EG   ++SM   +G+    +H  C+ID+LGR+G L  AE  
Sbjct: 1452 DHVTFVSLLSACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGF 1511

Query: 577  LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
            +++ P   + + W SLL +CR+HGN  + R+ A  L+EL+P D + Y   SN  +  G++
Sbjct: 1512 IKEMPVPPNDLAWRSLLAACRIHGNLELARKTAEHLLELDPSDDSAYVLYSNVCATSGKW 1571

Query: 637  EVSMQIRETALARKLTRDIGHSLIEV 662
            E    +R+   +  + +    S +++
Sbjct: 1572 EDVENLRKEMGSNNIKKQPACSWVKL 1597



 Score =  230 bits (587), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 151/581 (25%), Positives = 300/581 (51%), Gaps = 13/581 (2%)

Query: 41   QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
             L I+ +N  I+ + K G++  A+ +FDEM  R+  +++ ++SG  +    ++A+ L+ +
Sbjct: 776  NLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVRVGLYEEAVGLFCQ 835

Query: 101  MVSHGIKESASTFSSVLSVCSNAGFYT-EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G++ +    +S+++ CS +G+   EG Q+H  V+  G   ++Y+G+ LV  Y  +G
Sbjct: 836  MWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILGDVYVGTALVHFYGSIG 895

Query: 160  PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                A  LF+E+P+ N+ +W  ++  + +   P EVL +Y +M+ EGV  N  +F  +  
Sbjct: 896  LVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQEGVSGNQNTFATVTS 955

Query: 220  GCSIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
             C  G+L D+  G Q+  H+I+ G+ D ++ VAN+L+  +S+  S+ EA   FD +   D
Sbjct: 956  SC--GLLEDQVLGYQVLGHIIQYGFED-SVSVANSLISMFSSFSSVEEACYVFDHMNECD 1012

Query: 278  VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +ISWN+++S YA + L  ++L  F  M+      +  +    L+  S   N+ +G+ IHG
Sbjct: 1013 IISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCSSVDNLKWGRGIHG 1072

Query: 338  YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
             V KLG D  +V + + L  +Y +    E +  VF++   R L   NS+M   +  G   
Sbjct: 1073 LVVKLGLD-SNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWNSMMACYVQDGKCL 1131

Query: 398  DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            D +++   ++  G  ++ VT ++ L A S      L   +++H   I +GF   + V  +
Sbjct: 1132 DGLKILAELLQMGKVMNHVTFASALAACSNPEC--LIESKIVHALIIVAGFHDFLIVGNA 1189

Query: 458  LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
            L+  Y + G +  + +V + +P P+ V + +++ G++ N    EA+   +++ ++G+  +
Sbjct: 1190 LVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKAYKLIREKGIPAN 1249

Query: 518  KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
             +T + VL  C+    + +  +  ++   + G ++D    + +I M  + G L+ +  + 
Sbjct: 1250 YITMVSVLGACSAPDDLLKHGMPIHAHIVLTGFESDDYVKNSLITMYAKCGDLNSSNYIF 1309

Query: 578  QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
                G    + W++++ +   HG    G     I  E+  V
Sbjct: 1310 DGL-GNKSPITWNAMVAANAHHG---CGEEALKIFGEMRNV 1346



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 140/575 (24%), Positives = 274/575 (47%), Gaps = 5/575 (0%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++Y     +  +   G + +A+KLF+EMP  ++V++  L+ G     +P + L +Y  M 
Sbjct: 880  DVYVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMR 939

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              G+  + +TF++V S C        G Q+   ++  GF  ++ + + L+ ++       
Sbjct: 940  QEGVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFEDSVSVANSLISMFSSFSSVE 999

Query: 163  RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
             A  +FD + E ++ +WN M+ A+       E LR ++ M+    E N  +   ++  CS
Sbjct: 1000 EACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRHLHNETNSTTLSSLLSVCS 1059

Query: 223  IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                L  G+ +H  V+KLG +D N+ + N L+  YS  G   +A+  F  +   D+ISWN
Sbjct: 1060 SVDNLKWGRGIHGLVVKLG-LDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLISWN 1118

Query: 283  SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            S+++ Y       D L++   +    K  +  +F   L   S    +   K +H  +   
Sbjct: 1119 SMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIVHALIIVA 1178

Query: 343  GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            GF H  + V +AL  MYGK  ++  +  V ++ P       N+L+     +    +AV+ 
Sbjct: 1179 GF-HDFLIVGNALVTMYGKLGMMMEAKKVLQTMPQPDRVTWNALIGGHAENEEPNEAVKA 1237

Query: 403  FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
            +  + ++GI  + +T+ + L A S      L     +H   + +GFES+  V  SL+  Y
Sbjct: 1238 YKLIREKGIPANYITMVSVLGACSAPDDL-LKHGMPIHAHIVLTGFESDDYVKNSLITMY 1296

Query: 463  SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            ++CG +  S+ +F+ + + + + + +++   + +G G EAL +   M   G+  D+ +F 
Sbjct: 1297 AKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGEEALKIFGEMRNVGVNLDQFSFS 1356

Query: 523  CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
              LA   +  +++EGQ +   +  + G ++D    +  +DM G+ G +    ++L Q P 
Sbjct: 1357 GGLAATANLAVLEEGQQLHGLVIKL-GFESDLHVTNAAMDMYGKCGEMHDVLKMLPQ-PI 1414

Query: 583  GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617
                + W+ L+ +   HG     R   + +++L P
Sbjct: 1415 NRSRLSWNILISAFARHGCFQKARETFHEMLKLGP 1449



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 125/468 (26%), Positives = 242/468 (51%), Gaps = 11/468 (2%)

Query: 129  GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
            G  +H   +     L ++  + L+++Y + G    A  +FDE+  RN A+W+ ML  +  
Sbjct: 763  GKALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHRNEASWSTMLSGYVR 822

Query: 189  LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVDVNI 247
            +   +E + ++ +M   GVEPNG     ++  CS  G + DEG Q+H  V+K G +  ++
Sbjct: 823  VGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQVHGFVVKTGILG-DV 881

Query: 248  FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            +V  ALV FY + G +  A+K F+ +P  +V+SW S++  Y+D     + L ++ RM+  
Sbjct: 882  YVGTALVHFYGSIGLVYNAQKLFEEMPDHNVVSWTSLMVGYSDSGNPGEVLNVYQRMRQE 941

Query: 308  RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
                +  +F    +      +   G Q+ G++ + GF+  SV V ++L  M+   + +E 
Sbjct: 942  GVSGNQNTFATVTSSCGLLEDQVLGYQVLGHIIQYGFED-SVSVANSLISMFSSFSSVEE 1000

Query: 368  SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
            +  VF+      +   N+++++  H G  ++++  F +M      L   T STTL +L  
Sbjct: 1001 ACYVFDHMNECDIISWNAMISAYAHHGLCRESLRCFHWMRH----LHNETNSTTLSSLLS 1056

Query: 428  SASA--NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
              S+  NL   R +H   +K G +SN+ +  +L+  YS  G  E +  VF+ +   +++ 
Sbjct: 1057 VCSSVDNLKWGRGIHGLVVKLGLDSNVCICNTLLTLYSEAGRSEDAELVFQAMTERDLIS 1116

Query: 486  FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
            + S+M  Y ++G   + L +L  ++Q G + + VTF   LA C++   + E ++V +++ 
Sbjct: 1117 WNSMMACYVQDGKCLDGLKILAELLQMGKVMNHVTFASALAACSNPECLIESKIV-HALI 1175

Query: 546  SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             V G        + ++ M G+ G++ +A+++LQ  P   D + W++L+
Sbjct: 1176 IVAGFHDFLIVGNALVTMYGKLGMMMEAKKVLQTMP-QPDRVTWNALI 1222



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 117/465 (25%), Positives = 213/465 (45%), Gaps = 8/465 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ + + I  +VK G + +A+ +FD MP R +V++  ++SG  +    ++A  L+ +M 
Sbjct: 64  DLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMR 123

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+K +  T+ S L  C++      GIQ+   +    F  NL++ S LVD + + G   
Sbjct: 124 HCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKME 183

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  + ER++ +WN M+  +      D+   M+  M   G+ P+  +   ++R  +
Sbjct: 184 DASYLFGTMMERDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASA 243

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
            G  L    Q+H  + +LG+   +I V   L++ Y+  GSL  AK     +   D+ S  
Sbjct: 244 EGGGLIIANQIHGIITQLGYGSYDI-VTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSST 302

Query: 283 SIVSIYADYDLI-FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++++ YA   +   DAL+LF  M               LN  +   +   G QIH +  K
Sbjct: 303 ALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALK 362

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
               +  V + +AL DMY K   IE +   F+    +++    SL++     G    AV 
Sbjct: 363 YQPSY-DVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVS 421

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           ++  M  +G   ++VT  + L A S +     G C   +    K   +        ++D 
Sbjct: 422 LYKKMESKGFKPNDVTFLSLLFACSHTGLTAEG-CECFNNMVNKYNIKPRAEHYSCMVDL 480

Query: 462 YSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREA 502
           ++R G +E ++ +  KI    N   + +I+   S  G   +G+EA
Sbjct: 481 FARQGLLEEAYNLLCKIDIKHNASLWGAILGASSIYGYMSLGKEA 525



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 62/248 (25%), Positives = 122/248 (49%), Gaps = 11/248 (4%)

Query: 45   YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS-----GCGKFRHPKQALYLYD 99
            Y  N  I  + K G LNS+  +FD +  +  +T+N +++     GCG+     +AL ++ 
Sbjct: 1287 YVKNSLITMYAKCGDLNSSNYIFDGLGNKSPITWNAMVAANAHHGCGE-----EALKIFG 1341

Query: 100  EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            EM + G+     +FS  L+  +N     EG Q+H  V+ LGF  +L++ +  +D+Y + G
Sbjct: 1342 EMRNVGVNLDQFSFSGGLAATANLAVLEEGQQLHGLVIKLGFESDLHVTNAAMDMYGKCG 1401

Query: 160  PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
                 L +  +   R+  +WN+++ AF       +    +++M   G +P+ ++F  ++ 
Sbjct: 1402 EMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEMLKLGPKPDHVTFVSLLS 1461

Query: 220  GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDV 278
             C+ G L+DEG   +  + +   V   I     ++D     G L  A+     +PV  + 
Sbjct: 1462 ACNHGGLVDEGLAYYDSMTREFGVFPGIEHCVCIIDLLGRSGRLSHAEGFIKEMPVPPND 1521

Query: 279  ISWNSIVS 286
            ++W S+++
Sbjct: 1522 LAWRSLLA 1529



 Score = 72.4 bits (176), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 14/155 (9%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
            P  ++   N  ID + KSG +  AK+ FDEM  ++++++  LISG  K  +   A+ LY
Sbjct: 364 QPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLY 423

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP-------L 151
            +M S G K +  TF S+L  CS+ G   EG +    +      +N Y   P       +
Sbjct: 424 KKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNM------VNKYNIKPRAEHYSCM 477

Query: 152 VDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           VDL+ R G    A +L  ++  + N + W  +L A
Sbjct: 478 VDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGA 512



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 43/180 (23%), Positives = 84/180 (46%), Gaps = 3/180 (1%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           LK  S   S   G  + LH   I       I  + +L++ YS+ G+IE +  VF+++   
Sbjct: 751 LKGFSEITSQMAG--KALHAFCIVGSVNLGIFQTNTLINMYSKFGNIEHARYVFDEMRHR 808

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           N   ++++++GY R G+  EA+ +   M   G+ P+      ++  C+ SG + +     
Sbjct: 809 NEASWSTMLSGYVRVGLYEEAVGLFCQMWGLGVEPNGFMVASLITACSRSGYMADEGFQV 868

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +      GI  D    + ++   G  G++  A++L ++ P   + + W+SL+      GN
Sbjct: 869 HGFVVKTGILGDVYVGTALVHFYGSIGLVYNAQKLFEEMP-DHNVVSWTSLMVGYSDSGN 927



 Score = 47.4 bits (111), Expect = 0.024,   Method: Compositional matrix adjust.
 Identities = 41/158 (25%), Positives = 74/158 (46%), Gaps = 5/158 (3%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            +++ +N  +D + K G ++   K+  +   R  +++N+LIS   +    ++A   + EM+
Sbjct: 1386 DLHVTNAAMDMYGKCGEMHDVLKMLPQPINRSRLSWNILISAFARHGCFQKARETFHEML 1445

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGS--PLVDLYMRMGP 160
              G K    TF S+LS C++ G   EG+  +   ++  FG+   I     ++DL  R G 
Sbjct: 1446 KLGPKPDHVTFVSLLSACNHGGLVDEGLAYY-DSMTREFGVFPGIEHCVCIIDLLGRSGR 1504

Query: 161  SVRALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLR 197
               A     E+P   N   W  +L A C +    E+ R
Sbjct: 1505 LSHAEGFIKEMPVPPNDLAWRSLLAA-CRIHGNLELAR 1541


>gi|224096022|ref|XP_002310520.1| predicted protein [Populus trichocarpa]
 gi|222853423|gb|EEE90970.1| predicted protein [Populus trichocarpa]
          Length = 710

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 179/626 (28%), Positives = 309/626 (49%), Gaps = 40/626 (6%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           D   +  L+  C K R  + A  ++  ++     E     + ++ V    G+     ++ 
Sbjct: 23  DSSPFAKLLDLCVKLRSSRDARSVHGRLIQTPFCEEVFIQNRLIDVYGKCGYLDYARKVF 82

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            R+       N++  + ++   MR G    +  LF  +PE++  +WN M+  F +  R +
Sbjct: 83  DRMSER----NVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFE 138

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           E L  + +M  +    N  SF   +  CS    L  G Q+H  + K  +  +++F+ + L
Sbjct: 139 EALDWFVRMHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKY-SLDVFMGSGL 197

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +DFYS CG +  A++ FD +   +V+SWN +++ Y       +ALE F RM     +P  
Sbjct: 198 IDFYSKCGLVGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDE 257

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            +    ++  +       G QIH  V K       + + +AL DMY KC  +  +  VF+
Sbjct: 258 VTLASVVSACATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFD 317

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI-------------GLDEVTLS- 419
             P R+     ++++    S ++K A  MF  +  + I             G +E  L  
Sbjct: 318 RMPVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGL 377

Query: 420 -TTLKALSV-----------SASANLGSC---RLLHCCAIKSGF------ESNIAVSCSL 458
              LK  SV           +ASANL      R  H   +K GF      E +I V  SL
Sbjct: 378 FRMLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSL 437

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y +CG +E   +VFE +   + V + +++ GY++NG G EAL++ + M++ G  PD 
Sbjct: 438 IDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDH 497

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VT +  L  C+H+G+V+EG+  F SM   +G+   + HY+CM+D+LGRAG L++A++L++
Sbjct: 498 VTMIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIE 557

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   D ++WSSLL +C+VH N  +G+ VA  + E++P     Y  ++N YSE+G +  
Sbjct: 558 SMPKQPDAVVWSSLLSACKVHRNITLGKYVAEKIFEIDPTSSGPYVLLANMYSELGRWGD 617

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
           ++ +R+    R + +  G S I++ S
Sbjct: 618 AVSVRKLMRRRGVVKQPGCSWIDIQS 643



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 124/489 (25%), Positives = 227/489 (46%), Gaps = 38/489 (7%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           + N++S N  I   ++ G ++ +  LF  MP +D  ++N +I+G  +    ++AL  +  
Sbjct: 87  ERNVFSFNSIISTLMRWGFVDESAWLFSLMPEKDQCSWNSMIAGFAQHDRFEEALDWFVR 146

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M       +  +F S LS CS       G QIH  +    + L++++GS L+D Y + G 
Sbjct: 147 MHRDDFVLNDYSFGSGLSACSRLKDLKLGAQIHGLISKSKYSLDVFMGSGLIDFYSKCGL 206

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD + E+N+ +WN ++  + +     E L  + +M   G +P+ ++   +V  
Sbjct: 207 VGCARRVFDGMEEKNVVSWNCLITCYEQNGPAIEALEAFGRMTELGFKPDEVTLASVVSA 266

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV----- 275
           C+      EG Q+H+ V+K      ++ + NALVD Y+ CG + EA+  FD +PV     
Sbjct: 267 CATLAAFKEGVQIHARVVKSDKFRNDLILGNALVDMYAKCGRVNEARCVFDRMPVRNAVS 326

Query: 276 --------------------------DDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
                                      D++SWN++++ Y       +AL LF  ++    
Sbjct: 327 ETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFRMLKRESV 386

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-----DHGSVHVQSALTDMYGKCNV 364
            P+  +F   LN ++   ++  G+Q H +V K GF     +   + V ++L DMY KC  
Sbjct: 387 CPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLIDMYMKCGS 446

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +E  + VFE+   +     N+++     +G   +A+E+F  M++ G   D VT+  TL A
Sbjct: 447 VEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVTMIGTLCA 506

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNV 483
            S +     G  R       + G          ++D   R G +E +  + E +P  P+ 
Sbjct: 507 CSHAGLVEEGR-RYFFSMTKEHGLLPVKDHYTCMVDLLGRAGCLEEAKDLIESMPKQPDA 565

Query: 484 VCFTSIMNG 492
           V ++S+++ 
Sbjct: 566 VVWSSLLSA 574



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 125/255 (49%), Gaps = 9/255 (3%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S    +  + KS  + +A+ +F  +  +D+V++N LI+G  +    ++AL L+ 
Sbjct: 320 PVRNAVSETTMVSGYAKSASVKAARSMFATIKQKDIVSWNALIAGYTQNGENEEALGLFR 379

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL------NLYIGSPLVD 153
            +    +  +  TF ++L+  +N      G Q H  V+  GF        ++++G+ L+D
Sbjct: 380 MLKRESVCPTHYTFGNLLNASANLADLELGRQAHSHVVKHGFRFQSGEEPDIFVGNSLID 439

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +YM+ G     L +F+ + E++  +WN M+  + +     E L ++ KM   G +P+ ++
Sbjct: 440 MYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALELFQKMLESGEKPDHVT 499

Query: 214 FCYMVRGCSIGMLLDEGKQ-LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
               +  CS   L++EG++   S   + G + V       +VD     G L EAK   + 
Sbjct: 500 MIGTLCACSHAGLVEEGRRYFFSMTKEHGLLPVKDHY-TCMVDLLGRAGCLEEAKDLIES 558

Query: 273 IPVD-DVISWNSIVS 286
           +P   D + W+S++S
Sbjct: 559 MPKQPDAVVWSSLLS 573



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 45/160 (28%), Positives = 81/160 (50%), Gaps = 9/160 (5%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q   + +I+  N  ID ++K G +    ++F+ M  +D V++N +I G  +  +  +AL 
Sbjct: 424 QSGEEPDIFVGNSLIDMYMKCGSVEEGLRVFENMVEKDHVSWNTMIIGYAQNGYGMEALE 483

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL----NLYIGSPLV 152
           L+ +M+  G K    T    L  CS+AG   EG + +   ++   GL    + Y  + +V
Sbjct: 484 LFQKMLESGEKPDHVTMIGTLCACSHAGLVEEG-RRYFFSMTKEHGLLPVKDHY--TCMV 540

Query: 153 DLYMRMGPSVRALDLFDELPER-NLATWNLMLRAFCELSR 191
           DL  R G    A DL + +P++ +   W+ +L A C++ R
Sbjct: 541 DLLGRAGCLEEAKDLIESMPKQPDAVVWSSLLSA-CKVHR 579


>gi|347954522|gb|AEP33761.1| organelle transcript processing 82, partial [Crucihimalaya
           wallichii]
          Length = 710

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 165/570 (28%), Positives = 297/570 (52%), Gaps = 42/570 (7%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR----ALDLFDELPERNLATWNLMLRAFC 187
           IH +++  G     Y  S L++ +  + P       A+ +F+ + E NL  WN M R   
Sbjct: 21  IHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHA 79

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             S P   L +Y  M + G+ PN  +F ++++ C+      EG+Q+H HV+KLG+ D+++
Sbjct: 80  LSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY-DLDL 138

Query: 248 FVANALVDFYSACGSLIEAKKSFDF-------------------------------IPVD 276
           +V  +L+  Y   G L +A+K FD                                IP+ 
Sbjct: 139 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIK 198

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWN+++S YA+     +ALELF  M     RP   + V  ++  +++ ++  G+Q+H
Sbjct: 199 DVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVH 258

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            ++   GF   ++ + +AL D+Y KC  +E++  +FE    + +   N+L+    H    
Sbjct: 259 SWIDDHGFG-SNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 317

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNIAV 454
           K+A+ +F  M+  G   ++VT+ + L A +   +  +G  R +H    K   G  +  + 
Sbjct: 318 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIG--RWIHVYINKRLKGVANASSH 375

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++CG IE + QVF+ I + ++  + +++ G++ +G    A D+   M +  +
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEI 435

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD +TF+ +L+ C+HSGM+  G+ +F SMK  Y I    +HY CMID+LG +G+  +AE
Sbjct: 436 EPDDITFVGLLSACSHSGMLDLGRHIFRSMKEDYKITPKLEHYGCMIDLLGHSGLFKEAE 495

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           E++       D ++W SLL++C+++ N  +G   A  L+++EP +   Y  +SN Y+  G
Sbjct: 496 EMINTMEMEPDGVIWCSLLKACKMYANVELGESYAQNLIKIEPKNPGSYVLLSNIYATAG 555

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +    +IR     + + +  G S IE++S
Sbjct: 556 RWNEVAKIRALLNDKGMKKVPGCSSIEIDS 585



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 141/535 (26%), Positives = 240/535 (44%), Gaps = 83/535 (15%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ I+  V S H +    A  +F+ +   +++ +N +  G      P  ALYLY  M
Sbjct: 35  YALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCM 94

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-- 159
           +S G+  +  TF  +L  C+ +  + EG QIH  VL LG+ L+LY+ + L+ +Y++ G  
Sbjct: 95  ISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRL 154

Query: 160 ---------PSVR--------------------ALDLFDELPERNLATWNLMLRAFCELS 190
                     S R                    A  +FDE+P +++ +WN M+  + E  
Sbjct: 155 EDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETG 214

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----V 245
              E L ++ +M    V P+  +   +V  C+    ++ G+Q+HS      W+D      
Sbjct: 215 NNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELGRQVHS------WIDDHGFGS 268

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N+ + NAL+D Y  CG +  A   F+ +   DVISWN+++  Y   +L  +AL LF  M 
Sbjct: 269 NLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 328

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCN 363
              + P+  + +  L   +  G +  G+ IH Y+ K   G  + S H +++L DMY KC 
Sbjct: 329 RSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH-RTSLIDMYAKCG 387

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            IE++  VF+S   RSL   N+++      G    A ++F  M    I  D++T    L 
Sbjct: 388 DIEAAQQVFDSILNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLS 447

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A S S   +LG                                HI  S +   KI +P +
Sbjct: 448 ACSHSGMLDLGR-------------------------------HIFRSMKEDYKI-TPKL 475

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
             +  +++    +G+ +EA +M+  M    + PD V +  +L  C     V+ G+
Sbjct: 476 EHYGCMIDLLGHSGLFKEAEEMINTM---EMEPDGVIWCSLLKACKMYANVELGE 527



 Score =  149 bits (375), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 107/393 (27%), Positives = 188/393 (47%), Gaps = 35/393 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G++ SA+K+FDE+P +D+V++N +ISG  +  + K+AL L+ EM+
Sbjct: 168 DVVSYTALITGYASKGYIASAQKMFDEIPIKDVVSWNAMISGYAETGNNKEALELFKEMM 227

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++   ST  SV+S C+ +     G Q+H  +   GFG NL I + L+DLY++ G   
Sbjct: 228 KTNVRPDESTMVSVVSACAQSASIELGRQVHSWIDDHGFGSNLKIVNALIDLYIKCGEVE 287

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 288 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 347

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               ++ G+ +H ++ K L  V        +L+D Y+ CG +  A++ FD I    + SW
Sbjct: 348 HLGAIEIGRWIHVYINKRLKGVANASSHRTSLIDMYAKCGDIEAAQQVFDSILNRSLSSW 407

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +     A ++F RM+     P   +FV  L+  S +G +  G+ I      
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNEIEPDDITFVGLLSACSHSGMLDLGRHI------ 461

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                                    S    ++  P   LE    ++  L HSG  K+A E
Sbjct: 462 -----------------------FRSMKEDYKITP--KLEHYGCMIDLLGHSGLFKEAEE 496

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           M   M  E    D V   + LKA  + A+  LG
Sbjct: 497 MINTMEMEP---DGVIWCSLLKACKMYANVELG 526



 Score =  135 bits (341), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/428 (24%), Positives = 198/428 (46%), Gaps = 46/428 (10%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDF---YSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           + +H+ +IK G  + N +  + L++F         L  A   F+ I   +++ WN++   
Sbjct: 19  RMIHAQMIKTGLHNTN-YALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 77

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD-- 345
           +A       AL L+  M      P+  +F   L   +++     G+QIHG+V KLG+D  
Sbjct: 78  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 137

Query: 346 ----------------------------HGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
                                       H  V   +AL   Y     I S+  +F+  P 
Sbjct: 138 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALITGYASKGYIASAQKMFDEIPI 197

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           + +   N++++    +GN K+A+E+F  M+   +  DE T+ + + A + SAS  LG  R
Sbjct: 198 KDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSACAQSASIELG--R 255

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H      GF SN+ +  +L+D Y +CG +E +  +FE +   +V+ + +++ GY+   
Sbjct: 256 QVHSWIDDHGFGSNLKIVNALIDLYIKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 315

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQH 556
           + +EAL + + M++ G  P+ VT L +L  C H G ++ G+ +   + K + G+     H
Sbjct: 316 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIEIGRWIHVYINKRLKGVANASSH 375

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN-----EIIGRRVANI 611
            + +IDM  + G ++ A+++            W++++    +HG      +I  R   N 
Sbjct: 376 RTSLIDMYAKCGDIEAAQQVFDSILNRS-LSSWNAMIFGFAMHGRANAAFDIFSRMRKN- 433

Query: 612 LMELEPVD 619
             E+EP D
Sbjct: 434 --EIEPDD 439



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 51/236 (21%), Positives = 109/236 (46%), Gaps = 8/236 (3%)

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE---LSHQVFEKIPSPNVVCFTSI 489
           L S R++H   IK+G  +       L++      H +    +  VFE I  PN++ + ++
Sbjct: 15  LQSLRMIHAQMIKTGLHNTNYALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTM 74

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
             G++ +     AL +   MI  GL+P+  TF  +L  C  S   +EGQ +   +  + G
Sbjct: 75  FRGHALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKL-G 133

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
            D D   ++ +I M  + G L+ A ++  Q+    D + +++L+      G     +++ 
Sbjct: 134 YDLDLYVHTSLISMYVQNGRLEDARKVFDQS-SHRDVVSYTALITGYASKGYIASAQKMF 192

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           +   E+   D   ++ + + Y+E G  + ++++ +  +   +  D    +  V++C
Sbjct: 193 D---EIPIKDVVSWNAMISGYAETGNNKEALELFKEMMKTNVRPDESTMVSVVSAC 245


>gi|297743367|emb|CBI36234.3| unnamed protein product [Vitis vinifera]
          Length = 906

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 175/624 (28%), Positives = 322/624 (51%), Gaps = 10/624 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L +   N  +  FV+ G L  A  +F +M  RD+ ++N+L+ G  K  +  +AL LY  
Sbjct: 126 RLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHR 185

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  GI+    TF  VL  C        G ++H  V+  GF  ++ + + L+ +Y++ G 
Sbjct: 186 MLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGD 245

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +P R+  +WN M+  + E     E LR++  M+   V+P+ ++   ++  
Sbjct: 246 IFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305

Query: 221 CSIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           C    L DE  G+++H +VIK G+V   + V N+L+  +S+ G   EA+  F  +   D+
Sbjct: 306 CE--ALGDERLGREVHGYVIKTGFV-AEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDL 362

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW +++S Y    L   A+E +  M+     P   +    L+  +  G +  G  +H +
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEF 422

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             + G     V V ++L DMY KC  I+ ++ VF   P +++    S++  L  +    +
Sbjct: 423 ADRTGLT-SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFE 481

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+  F  M+   +  + VTL + L A +   + + G  + +H  A+++G   +  +  +L
Sbjct: 482 ALFFFQQMI-LSLKPNSVTLVSVLSACARIGALSCG--KEIHAHALRTGLGFDGFLPNAL 538

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y RCG +E +   F      +V  +  ++ GY++ G G  A+++   MI+  + PD+
Sbjct: 539 LDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVNPDE 597

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TF  +L  C+ SGMV +G   F SM+  + I  + +HY+ ++D+LGRAG L+ A E ++
Sbjct: 598 ITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYEFIK 657

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           + P   D  +W +LL +CR++ N  +G   A  + E++      Y  + N Y++ G+++ 
Sbjct: 658 KMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGKWDE 717

Query: 639 SMQIRETALARKLTRDIGHSLIEV 662
             ++R+     +LT D G S +EV
Sbjct: 718 VARVRKIMRENRLTVDPGCSWVEV 741



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 148/506 (29%), Positives = 261/506 (51%), Gaps = 16/506 (3%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++AL   D M    +     T+ ++L +C      +EG ++H  V      L + +G+ L
Sbjct: 76  EKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNAL 135

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           + +++R G  V A  +F ++ ER+L +WN+++  + +    DE L +Y++M   G+ P+ 
Sbjct: 136 LSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDV 195

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            +F  ++R C     L  G+++H HVI+ G+ + ++ V NAL+  Y  CG +  A+  FD
Sbjct: 196 YTFPCVLRTCGGLPDLARGREVHLHVIRYGF-ESDVDVVNALITMYVKCGDIFSARLVFD 254

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  D ISWN+++S Y + D+  + L LFF M+     P + +    ++     G+   
Sbjct: 255 RMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL 314

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+++HGYV K GF    V V ++L  M+      + +  VF     + L    ++++   
Sbjct: 315 GREVHGYVIKTGFV-AEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYE 373

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGF 448
            +G  + AVE +  M  EG+  DE+T+++ L     SA A LG      +LH  A ++G 
Sbjct: 374 KNGLPEKAVETYTIMEHEGVVPDEITIASVL-----SACAGLGLLDKGIMLHEFADRTGL 428

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            S + V+ SL+D YS+C  I+ + +VF +IP+ NV+ +TSI+ G   N    EAL   + 
Sbjct: 429 TSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQ 488

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRA 567
           MI   L P+ VT + VL+ C   G +  G+ +  +++++  G D      + ++DM  R 
Sbjct: 489 MIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRC 545

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLL 593
           G ++ A    Q      D   W+ LL
Sbjct: 546 GRMEPAWN--QFNSCEKDVASWNILL 569



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 209/420 (49%), Gaps = 6/420 (1%)

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++   C     ++ L   + M+   V     ++  ++R C       EG ++HS+V K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                + + + NAL+  +   G L+EA   F  +   D+ SWN +V  YA      +AL 
Sbjct: 123 TV-TRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALN 181

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+ RM     RP + +F   L       ++  G+++H +V + GF+   V V +AL  MY
Sbjct: 182 LYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFE-SDVDVVNALITMY 240

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  I S+  VF+  P R     N++++    +    + + +F  M +  +  D +T++
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + + A        LG  R +H   IK+GF + ++V+ SL+  +S  G  + +  VF K+ 
Sbjct: 301 SVISACEALGDERLG--REVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             ++V +T++++GY +NG+  +A++   +M   G++PD++T   VL+ C   G++ +G +
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG-I 417

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           + +      G+ +     + +IDM  +   +DKA E+  + P   + + W+S++   R++
Sbjct: 418 MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLN 476


>gi|357457477|ref|XP_003599019.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355488067|gb|AES69270.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 944

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 173/615 (28%), Positives = 314/615 (51%), Gaps = 5/615 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  ID + K G ++SA+++FD M  RD V++  +++G  K     + L L  +M    +
Sbjct: 236 SNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKMRRGNV 295

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K +     + L V +      +G +I+   L +G   ++ + +P+V +Y + G   +A +
Sbjct: 296 KMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGLMSDIVVATPIVCMYAKCGELKKARE 355

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LF  L  R+L  W+  L A  E   P EVL ++  M+ EG++P+      +V GC+    
Sbjct: 356 LFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSGCTEISN 415

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +  GK +H + IK   ++ +I +   LV  Y        A   F+ + + D++ WN++++
Sbjct: 416 IGLGKIMHCYAIKAD-MESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIVVWNTLIN 474

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            +  Y     ALE+F R+QL    P   + V   +  +   ++  G  +HG + K GF+ 
Sbjct: 475 GFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGIEKSGFE- 533

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGF 405
             +HV+ AL DMY KC  + S   +F        E   N ++   LH+G   +A+  F  
Sbjct: 534 SDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMIAGYLHNGYSNEAISTFRR 593

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           M  E +  + VT  T L A  VS  + L      H C I+ GF S   +  SL+D Y++C
Sbjct: 594 MKLENVRPNLVTFVTILPA--VSYLSILREAMAFHTCIIRMGFLSCTLIGNSLIDMYAKC 651

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G +  S + F ++ + + + + ++++ Y+ +G G  A+ +  VM +  +  D V+++ VL
Sbjct: 652 GQLRYSEKCFHEMENKDTISWNAMLSAYAMHGQGELAVALFSVMQESNVRVDSVSYISVL 711

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C HSG+++EG  +F SM   + ++   +HY+CM+D+LG AG+ D+   LL +     D
Sbjct: 712 SACRHSGLIQEGWDIFASMCEKHHVEPSMEHYACMVDLLGCAGLFDEVLSLLNKMTTEPD 771

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             +W +LL +C++H N  +G    + L++LEP +   +  +S+ Y++ G +  + + R  
Sbjct: 772 ARVWGALLAACKIHSNVTLGEVAVHHLLKLEPRNPVHHVVLSDIYAQCGRWNDARRTRSH 831

Query: 646 ALARKLTRDIGHSLI 660
                L +  G+S +
Sbjct: 832 INNHGLKKIPGYSWV 846



 Score =  209 bits (531), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 135/529 (25%), Positives = 271/529 (51%), Gaps = 11/529 (2%)

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F ++    ++ YN  I    KF H  +A+ LY  ++  G+K    TF+ VL  C++A  +
Sbjct: 56  FLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSALDF 115

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            EG+ I+  ++  G   ++YIG+ L+D++ +MG    A ++FD++P ++   WN M+   
Sbjct: 116 HEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGCLDNARNVFDKMPVKDGVCWNAMISGL 175

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG--KQLHSHVIKLGWVD 244
            +   P E L M+ +M+ EG E + +S   +    ++  L D G  K +H +V++     
Sbjct: 176 SQSLNPCEALEMFWRMQMEGFEVDKVSILNLAP--AVSRLGDVGCCKSIHGYVVRRSICG 233

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           V   V+N+L+D Y  CG +  A++ FD + V D +SW ++++ Y      F+ L+L  +M
Sbjct: 234 V---VSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVSWATMMAGYVKNGCYFEGLQLLHKM 290

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +    + +  + V  L   +   ++  GK+I+ Y  ++G     + V + +  MY KC  
Sbjct: 291 RRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYALQMGL-MSDIVVATPIVCMYAKCGE 349

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++ +  +F S  GR L   ++ +++L+ +G  ++ + +F  M  EG+  D+  LS  +  
Sbjct: 350 LKKARELFLSLEGRDLVAWSAFLSALVETGYPREVLSIFQVMQYEGLKPDKAILSILVSG 409

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
              +  +N+G  +++HC AIK+  ES+I++  +L+  Y R      +  +F ++   ++V
Sbjct: 410 --CTEISNIGLGKIMHCYAIKADMESDISMVTTLVSMYIRFELFTYAMTLFNRMQIKDIV 467

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + +++NG+++ G    AL+M   +   G++PD  T + + + C     +  G  +   +
Sbjct: 468 VWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTMVGLFSACAIMDDLDLGTCLHGGI 527

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +   G ++D      ++DM  + G L   E L   T    D + W+ ++
Sbjct: 528 EKS-GFESDIHVKVALMDMYAKCGSLCSVERLFLLTKHVKDEVSWNVMI 575



 Score =  171 bits (434), Expect = 8e-40,   Method: Compositional matrix adjust.
 Identities = 144/617 (23%), Positives = 288/617 (46%), Gaps = 12/617 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSL-LLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           +L   L P   T   +   CTS +     + +         + ++Y     ID F K G 
Sbjct: 90  ILKIGLKPDKFTFNFVLKACTSALDFHEGVNIYKDIVFNGLECDVYIGTSLIDMFCKMGC 149

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L++A+ +FD+MP +D V +N +ISG  +  +P +AL ++  M   G +    +  ++   
Sbjct: 150 LDNARNVFDKMPVKDGVCWNAMISGLSQSLNPCEALEMFWRMQMEGFEVDKVSILNLAPA 209

Query: 120 CSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            S  G       IH  V+     G+   + + L+D+Y + G    A  +FD +  R+  +
Sbjct: 210 VSRLGDVGCCKSIHGYVVRRSICGV---VSNSLIDMYCKCGDVHSAQRVFDRMGVRDDVS 266

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  M+  + +     E L++ +KM+   V+ N ++    +   +    L++GK+++++ +
Sbjct: 267 WATMMAGYVKNGCYFEGLQLLHKMRRGNVKMNKVAVVNALLVVAEMRDLEKGKEIYNYAL 326

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           ++G +  +I VA  +V  Y+ CG L +A++ F  +   D+++W++ +S   +     + L
Sbjct: 327 QMGLMS-DIVVATPIVCMYAKCGELKKARELFLSLEGRDLVAWSAFLSALVETGYPREVL 385

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            +F  MQ    +P        ++  +   N+  GK +H Y  K   +   + + + L  M
Sbjct: 386 SIFQVMQYEGLKPDKAILSILVSGCTEISNIGLGKIMHCYAIKADME-SDISMVTTLVSM 444

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y +  +   ++ +F     + +   N+L+      G+   A+EMF  +   GI  D  T+
Sbjct: 445 YIRFELFTYAMTLFNRMQIKDIVVWNTLINGFTKYGDPHLALEMFNRLQLSGILPDSGTM 504

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
                A ++    +LG+C  LH    KSGFES+I V  +LMD Y++CG +    ++F   
Sbjct: 505 VGLFSACAIMDDLDLGTC--LHGGIEKSGFESDIHVKVALMDMYAKCGSLCSVERLFLLT 562

Query: 479 PS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
               + V +  ++ GY  NG   EA+     M    + P+ VTF+ +L   ++  +++E 
Sbjct: 563 KHVKDEVSWNVMIAGYLHNGYSNEAISTFRRMKLENVRPNLVTFVTILPAVSYLSILREA 622

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
            + F++     G  +     + +IDM  + G L  +E+   +     D + W+++L +  
Sbjct: 623 -MAFHTCIIRMGFLSCTLIGNSLIDMYAKCGQLRYSEKCFHEME-NKDTISWNAMLSAYA 680

Query: 598 VHGNEIIGRRVANILME 614
           +HG   +   + +++ E
Sbjct: 681 MHGQGELAVALFSVMQE 697



 Score = 57.4 bits (137), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 35/127 (27%), Positives = 64/127 (50%), Gaps = 12/127 (9%)

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-- 529
           H  F +I +P+++ + S +  YS+     +A+++   +++ GL PDK TF  VL  C   
Sbjct: 53  HTHFLQIKNPSLILYNSFIKAYSKFHHFHKAINLYHTILKIGLKPDKFTFNFVLKACTSA 112

Query: 530 ---HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
              H G+     +VFN      G++ D    + +IDM  + G LD A  +  + P   D 
Sbjct: 113 LDFHEGVNIYKDIVFN------GLECDVYIGTSLIDMFCKMGCLDNARNVFDKMP-VKDG 165

Query: 587 MMWSSLL 593
           + W++++
Sbjct: 166 VCWNAMI 172


>gi|356557599|ref|XP_003547103.1| PREDICTED: pentatricopeptide repeat-containing protein At4g31070,
           mitochondrial-like [Glycine max]
          Length = 601

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 176/577 (30%), Positives = 301/577 (52%), Gaps = 16/577 (2%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           Q L L+ E+   G    +    SV+   S+A  +T G Q+HC  L  G      + + ++
Sbjct: 34  QTLQLFSELHLCGHSSISFFLPSVIKASSSAQCHTFGTQLHCLALKTGSHSETVVSNSII 93

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
            +Y +      A  +FD +P R+  TWN ++  +      +E L   N +   G+ P   
Sbjct: 94  TMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALNDVYLLGLVPKPE 153

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
               +V  C   M    G+Q+H+ V+    +  ++F++ ALVDFY  CG  + A + FD 
Sbjct: 154 LLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRCGDSLMALRVFDG 213

Query: 273 IPVDDVISWNSIVS---IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           + V +V+SW +++S    + DYD   +A   F  MQ     P+  + +  L+  +  G V
Sbjct: 214 MEVKNVVSWTTMISGCIAHQDYD---EAFACFRAMQAEGVCPNRVTSIALLSACAEPGFV 270

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC-NVIESSVAVFESAPGRSLECCNSLMT 388
             GK+IHGY  + GF+       SAL +MY +C   +  +  +FE +  R +   +S++ 
Sbjct: 271 KHGKEIHGYAFRHGFE-SCPSFSSALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSIIG 329

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIK 445
           S    G+   A+++F  M  E I  + VTL        +SA  NL S +    LH    K
Sbjct: 330 SFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAV-----ISACTNLSSLKHGCGLHGYIFK 384

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            GF  +I+V  +L++ Y++CG +  S ++F ++P+ + V ++S+++ Y  +G G +AL +
Sbjct: 385 FGFCFSISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQI 444

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              M +RG+ PD +TFL VL+ CNH+G+V EGQ +F  +++   I    +HY+C++D+LG
Sbjct: 445 FYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLG 504

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           R+G L+ A E+ +  P      +WSSL+ +C++HG   I   +A  L+  EP +   Y+ 
Sbjct: 505 RSGKLEYALEIRRTMPMKPSARIWSSLVSACKLHGRLDIAEMLAPQLIRSEPNNAGNYTL 564

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           ++  Y+E G +  + Q+RE    +KL +  G S IE 
Sbjct: 565 LNTIYAEHGHWLDTEQVREAMKLQKLKKCYGFSRIEA 601



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 124/466 (26%), Positives = 228/466 (48%), Gaps = 10/466 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  I  + K   + SA+++FD MP RD +T+N LI+G     + ++AL   +++   G+
Sbjct: 89  SNSIITMYFKFSDVGSARQVFDTMPHRDPITWNSLINGYLHNGYLEEALEALNDVYLLGL 148

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCR-VLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
                  +SV+S+C        G QIH   V++   G ++++ + LVD Y R G S+ AL
Sbjct: 149 VPKPELLASVVSMCGRRMGSKIGRQIHALVVVNERIGQSMFLSTALVDFYFRCGDSLMAL 208

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FD +  +N+ +W  M+         DE    +  M+AEGV PN ++   ++  C+   
Sbjct: 209 RVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQAEGVCPNRVTSIALLSACAEPG 268

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE-AKKSFDFIPVDDVISWNSI 284
            +  GK++H +  + G+     F ++ALV+ Y  CG  +  A+  F+     DV+ W+SI
Sbjct: 269 FVKHGKEIHGYAFRHGFESCPSF-SSALVNMYCQCGEPMHLAELIFEGSSFRDVVLWSSI 327

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  ++     F AL+LF +M+     P+  + +  ++  +   ++  G  +HGY+ K GF
Sbjct: 328 IGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFKFGF 387

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              S+ V +AL +MY KC  +  S  +F   P R     +SL+++    G  + A+++F 
Sbjct: 388 CF-SISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFY 446

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M + G+  D +T    L A + +     G  R+             I     L+D   R
Sbjct: 447 EMNERGVKPDAITFLAVLSACNHAGLVAEGQ-RIFKQVRADCEIPLTIEHYACLVDLLGR 505

Query: 465 CGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            G +E + ++   +P  P+   ++S+++    +G     LD+ E++
Sbjct: 506 SGKLEYALEIRRTMPMKPSARIWSSLVSACKLHGR----LDIAEML 547



 Score =  135 bits (340), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 181/364 (49%), Gaps = 4/364 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ S   +D + + G    A ++FD M  +++V++  +ISGC   +   +A   +  M 
Sbjct: 187 SMFLSTALVDFYFRCGDSLMALRVFDGMEVKNVVSWTTMISGCIAHQDYDEAFACFRAMQ 246

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G+  +  T  ++LS C+  GF   G +IH      GF       S LV++Y + G  +
Sbjct: 247 AEGVCPNRVTSIALLSACAEPGFVKHGKEIHGYAFRHGFESCPSFSSALVNMYCQCGEPM 306

Query: 163 RALDL-FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              +L F+    R++  W+ ++ +F       + L+++NKM+ E +EPN ++   ++  C
Sbjct: 307 HLAELIFEGSSFRDVVLWSSIIGSFSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISAC 366

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L  G  LH ++ K G+   +I V NAL++ Y+ CG L  ++K F  +P  D ++W
Sbjct: 367 TNLSSLKHGCGLHGYIFKFGFC-FSISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTW 425

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +S++S Y  +     AL++F+ M     +P   +F+  L+  +  G V  G++I   V  
Sbjct: 426 SSLISAYGLHGCGEQALQIFYEMNERGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRA 485

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLHSGNIKDAV 400
                 ++   + L D+ G+   +E ++ +  + P + S    +SL+++    G + D  
Sbjct: 486 DCEIPLTIEHYACLVDLLGRSGKLEYALEIRRTMPMKPSARIWSSLVSACKLHGRL-DIA 544

Query: 401 EMFG 404
           EM  
Sbjct: 545 EMLA 548



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 61/265 (23%), Positives = 128/265 (48%), Gaps = 23/265 (8%)

Query: 25  PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           P  SS L++ YCQ    +++                  A+ +F+    RD+V ++ +I  
Sbjct: 289 PSFSSALVNMYCQCGEPMHL------------------AELIFEGSSFRDVVLWSSIIGS 330

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
             +     +AL L+++M +  I+ +  T  +V+S C+N      G  +H  +   GF  +
Sbjct: 331 FSRRGDSFKALKLFNKMRTEEIEPNYVTLLAVISACTNLSSLKHGCGLHGYIFKFGFCFS 390

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           + +G+ L+++Y + G    +  +F E+P R+  TW+ ++ A+      ++ L+++ +M  
Sbjct: 391 ISVGNALINMYAKCGCLNGSRKMFLEMPNRDNVTWSSLISAYGLHGCGEQALQIFYEMNE 450

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL- 263
            GV+P+ ++F  ++  C+   L+ EG+++   V     + + I     LVD     G L 
Sbjct: 451 RGVKPDAITFLAVLSACNHAGLVAEGQRIFKQVRADCEIPLTIEHYACLVDLLGRSGKLE 510

Query: 264 --IEAKKSFDFIPVDDVISWNSIVS 286
             +E +++    P   +  W+S+VS
Sbjct: 511 YALEIRRTMPMKPSARI--WSSLVS 533


>gi|357487403|ref|XP_003613989.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
 gi|355515324|gb|AES96947.1| hypothetical protein MTR_5g043450 [Medicago truncatula]
          Length = 828

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/604 (27%), Positives = 318/604 (52%), Gaps = 4/604 (0%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  AKK+FDEM  RD+V ++ +IS   +    ++ L ++  M+  GI+  +    SV   
Sbjct: 153 LRDAKKVFDEMCVRDLVLWSSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEA 212

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C   G       +H  V+  G   +  + + L+ +Y + G   RA  LF+ + +R+ + W
Sbjct: 213 CGKIGCLRLAKSVHGYVMREGMVGDGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCW 272

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+ A+ +    +E L ++ KM+   VEPN ++   ++  C+    L EGK +H  V++
Sbjct: 273 TSMISAYNQNECFEEALDVFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLR 332

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                  + +  AL+DFYSAC  +   +K    I  ++++SWN+++S YA   L  +A+ 
Sbjct: 333 NAMGVTGLDLGPALIDFYSACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMA 392

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F  M      P   S    ++ ++ +G++ FG+QIHG+V K GF      VQ++L DMY
Sbjct: 393 FFACMVAKGIMPDSFSLASSISASASSGSIQFGQQIHGHVMKRGF--FDEFVQNSLMDMY 450

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC    S+  +F     +S+   N ++     +G   +A+ +F  M    + +++VT  
Sbjct: 451 SKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFL 510

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + ++A S     + G  + +H   I +G ++++ +  +L+D Y++CG ++ + +VF+ I 
Sbjct: 511 SAIQACSNLGYLDKG--KWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIV 568

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +VV +++++  +  +G    A  +   M+   + P++VTF+ +L+ C H+G VKEG+ 
Sbjct: 569 EKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRHAGSVKEGKF 628

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            FN+M+  YGI  + +H++ ++D+L RAG ++ A E+++         +W +LL  CR++
Sbjct: 629 YFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAASIWGALLNGCRIY 688

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
           G   +   +A  L  +   D   Y+ +SN Y+E G +  S ++R       L +  G+S 
Sbjct: 689 GRMDMIEYIAEELGGISTDDTGYYTLLSNIYAEGGNWYESRKVRSKMEGMGLKKVPGYST 748

Query: 660 IEVN 663
           +E++
Sbjct: 749 VEID 752



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 160/602 (26%), Positives = 293/602 (48%), Gaps = 20/602 (3%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           T  +P  RT +TL      +  L + L++ S    NP     +S + ++ + + G L S+
Sbjct: 2   TLYMPLFRTCSTL----RRLTQLHAHLVVTSL-HNNP----LASTKLLESYSQMGSLQSS 52

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHP-KQALYLYDEMVSHGIKES---ASTFSSVLSV 119
           + +F   P+ D   +++LI  C  + H  ++ L L++  +  G K +   A  + SV+  
Sbjct: 53  RLVFYTHPSPDSFMFSVLIK-CHLWNHLFREVLSLFNHHIQMGSKLTQNCAFLYPSVIRA 111

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            +  G    G ++H R+L  GF  +  IG+ LV +Y  +     A  +FDE+  R+L  W
Sbjct: 112 VTGVGELIVGRKLHGRILKSGFCEDRVIGTSLVGMYGELCFLRDAKKVFDEMCVRDLVLW 171

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           + ++  + E     E L M+  M  EG+ P+ +    +   C     L   K +H +V++
Sbjct: 172 SSIISCYVENGVYREGLEMFRSMICEGIRPDSVMLLSVAEACGKIGCLRLAKSVHGYVMR 231

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G V  +  ++N+L+  YS CG L  AK+ F+ I       W S++S Y   +   +AL+
Sbjct: 232 EGMVG-DGSLSNSLIVMYSQCGYLCRAKRLFECIDDRSTSCWTSMISAYNQNECFEEALD 290

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F +MQ     P+  + +  LN  +R G +  GK +H +V +       + +  AL D Y
Sbjct: 291 VFIKMQDSEVEPNDVTMISVLNSCARLGRLKEGKSVHCFVLRNAMGVTGLDLGPALIDFY 350

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
             C  + S   +  S    ++   N+L++     G   +A+  F  MV +GI  D  +L+
Sbjct: 351 SACWKMSSCEKLLHSIGNENIVSWNTLISFYAREGLNDEAMAFFACMVAKGIMPDSFSLA 410

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           +++ A + S S   G  + +H   +K GF     V  SLMD YS+CG    ++ +F KI 
Sbjct: 411 SSISASASSGSIQFG--QQIHGHVMKRGFFDEF-VQNSLMDMYSKCGFASSAYTIFNKIK 467

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             ++V +  ++ G+S+NG+  EAL + + M +  L  +KVTFL  +  C++ G + +G+ 
Sbjct: 468 HKSIVAWNCMICGFSQNGISVEALSLFDEMFKNRLEINKVTFLSAIQACSNLGYLDKGKW 527

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           + + +  V G   D    + ++DM  + G L  A+++          + WS+++ +  +H
Sbjct: 528 IHHKI-IVTGNQNDLYIDTALVDMYAKCGDLQTAQKVFDSIV-EKSVVSWSTMIAAHGIH 585

Query: 600 GN 601
           G 
Sbjct: 586 GQ 587



 Score = 99.8 bits (247), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 67/255 (26%), Positives = 129/255 (50%), Gaps = 6/255 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +  N  +D + K G  +SA  +F+++  + +V +N +I G  +     +AL L+DEM  +
Sbjct: 441 FVQNSLMDMYSKCGFASSAYTIFNKIKHKSIVAWNCMICGFSQNGISVEALSLFDEMFKN 500

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            ++ +  TF S +  CSN G+  +G  IH +++  G   +LYI + LVD+Y + G    A
Sbjct: 501 RLEINKVTFLSAIQACSNLGYLDKGKWIHHKIIVTGNQNDLYIDTALVDMYAKCGDLQTA 560

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD + E+++ +W+ M+ A     + +    +++KM    ++PN ++F  ++  C   
Sbjct: 561 QKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHKMVLSNIKPNEVTFMNILSACRHA 620

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI--PVDDVISWN 282
             + EGK   + +     +  N+    ++VD  S  G +  A +    I  PV   I W 
Sbjct: 621 GSVKEGKFYFNTMRDYYGIVPNVEHFASIVDLLSRAGDINGAYEIIKSIRTPVAASI-WG 679

Query: 283 SIVS---IYADYDLI 294
           ++++   IY   D+I
Sbjct: 680 ALLNGCRIYGRMDMI 694



 Score = 54.7 bits (130), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 73/148 (49%), Gaps = 4/148 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q ++Y     +D + K G L +A+K+FD +  + +V+++ +I+  G       A  L+ +
Sbjct: 538 QNDLYIDTALVDMYAKCGDLQTAQKVFDSIVEKSVVSWSTMIAAHGIHGQINAATSLFHK 597

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRM 158
           MV   IK +  TF ++LS C +AG   EG + +   +   +G+  N+   + +VDL  R 
Sbjct: 598 MVLSNIKPNEVTFMNILSACRHAGSVKEG-KFYFNTMRDYYGIVPNVEHFASIVDLLSRA 656

Query: 159 GPSVRALDLFDELPERNLAT-WNLMLRA 185
           G    A ++   +     A+ W  +L  
Sbjct: 657 GDINGAYEIIKSIRTPVAASIWGALLNG 684


>gi|302773754|ref|XP_002970294.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
 gi|300161810|gb|EFJ28424.1| hypothetical protein SELMODRAFT_93439 [Selaginella moellendorffii]
          Length = 1096

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 183/666 (27%), Positives = 340/666 (51%), Gaps = 23/666 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKK 65
           +LP   T  T+   CT++       +         +L+       +  F K G L +A+ 
Sbjct: 328 VLPNKVTFVTVLRACTTLAQCEK--IFARVKHLGLELDTTLGTAFVSTFAKLGDLAAARD 385

Query: 66  LFDEM-PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           +F+ +  +R++V++ ++I    +    + A  LY  M     + +A TF +V+  C    
Sbjct: 386 VFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRM---DCEPNAVTFMAVMDSCLRPE 442

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
                 QIH  +++ GF  ++ +   LV +Y + G    A  +F+ L ER++  WN ML 
Sbjct: 443 DLPRAEQIHAHMVASGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLS 502

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           AF      +  L++Y +M  EG +P+ +++  ++  C     + E ++ ++   +L   +
Sbjct: 503 AFASNGCYERSLKLYERMLLEGTKPDKITYLAVLDACQS---VSEARR-YAATFEL---E 555

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVSIYADYDLIFDALELFFR 303
           ++I   NA V  Y+ CGSL EAK +FD I   ++ ++WN+++S  A +     ALE F++
Sbjct: 556 LDIAARNAAVSAYARCGSLKEAKAAFDAIQWKNNAVTWNAMISGLAQHGESKQALECFWK 615

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M+L   R +  +++  L   S   ++  G+Q+H  +  L  +    ++ +A+ +MYGKC 
Sbjct: 616 MELEGVRANSVTYLASLEACSSLKDLTRGRQLHARI--LLENIHEANLSNAVINMYGKCG 673

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            ++ ++  F   P R +   N+++ +    G+ + A+E F  M  EG   D  T    + 
Sbjct: 674 SLDEAMDEFVKMPERDVISWNTMIATYAQHGSGRQALEFFKQMDLEGWTPDRATYLGAID 733

Query: 424 ALSVSASANLGSCRLLHCCAIKSG--FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           A     S  LG  + +H     +    E +  V+ +L+  Y+RCG +  +  VF +  S 
Sbjct: 734 ACGSVPSLALG--KTIHSIVATAAPCLEQDPGVATALVTMYARCGSLHDAKSVFWRSHSR 791

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLV 540
           N+V +++++   +++G   EALD+   M  +G  PD +TF  ++A C+  G+VK+G + +
Sbjct: 792 NLVTWSNLIAACAQHGRENEALDLFREMQLQGTKPDALTFSTLVAACSRRGVVKDGGRRI 851

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F+++  VY + A  +HY CM+++LGRAG L++AE L+Q  P      +W +LL +C   G
Sbjct: 852 FDALGRVYPVSASAEHYGCMVEVLGRAGKLEEAEGLIQGMPRKASGAIWMALLAACNRRG 911

Query: 601 NEIIGRRVANILMELEPVDFAV-YSQVSNFYSEIGEFEVSMQIRETALARKLTRDI-GHS 658
           +   G R AN   +L+P  FA   + ++  Y   G +E + ++R+   +R   R+  G S
Sbjct: 912 DLERGIRAANRAQQLDPGSFAASMAMLAELYGAAGRWEDAARVRKAVESRNARREPGGRS 971

Query: 659 LIEVNS 664
            IEVN+
Sbjct: 972 WIEVNN 977



 Score =  213 bits (541), Expect = 4e-52,   Method: Compositional matrix adjust.
 Identities = 148/564 (26%), Positives = 270/564 (47%), Gaps = 23/564 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +N Y  N  I  + K G L  A ++F+ +P  ++ ++  LI+   K  H ++ L  + +M
Sbjct: 59  VNRYLQNHLIFMYAKCGCLQDAVEVFELLPCPNVFSWTALITAYAKEGHLREVLGFFRKM 118

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G K  A  FS+VL+ CS+AG   EG  IH  V+  G    + +G+ +V+LY + G  
Sbjct: 119 QLDGTKPDAFVFSTVLTACSSAGALNEGKAIHDCVVLAGMETQV-VGNAIVNLYGKCGRV 177

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRG 220
             A  +F+ LPERNL +WN ++ A  +     + ++++  M  +G V PN  +F  +V  
Sbjct: 178 HEAKAVFERLPERNLVSWNALIAANAQNGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDA 237

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI- 279
           CS  + L  GK  H  +I+ G+ D  +FV N+LV+ Y  CGS+  A+  F+ + + DV+ 
Sbjct: 238 CSNLLDLPRGKSTHERIIRTGF-DSYLFVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLS 296

Query: 280 --SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
             SW  I++ +A    + +A  LF++M L    P+  +FV  L   +        ++I  
Sbjct: 297 VYSWTVIIAAFAHNGHLLEAFVLFYKMDLEGVLPNKVTFVTVLRACTTLAQC---EKIFA 353

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNI 396
            V  LG +  +  + +A    + K   + ++  VFE+    R++     ++ +    G I
Sbjct: 354 RVKHLGLELDTT-LGTAFVSTFAKLGDLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFI 412

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + A +++  M  E    + VT    +   S     +L     +H   + SGFES++ +  
Sbjct: 413 RAAFDLYKRMDCEP---NAVTFMAVMD--SCLRPEDLPRAEQIHAHMVASGFESDVVLQV 467

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
            L+  Y +CG ++ +  +FE +   +VV + S+++ ++ NG    +L + E M+  G  P
Sbjct: 468 CLVTMYGKCGSVDSAWSIFENLKERSVVAWNSMLSAFASNGCYERSLKLYERMLLEGTKP 527

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           DK+T+L VL  C      +     F        ++ D    +  +    R G L +A+  
Sbjct: 528 DKITYLAVLDACQSVSEARRYAATFE-------LELDIAARNAAVSAYARCGSLKEAKAA 580

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHG 600
                   + + W++++     HG
Sbjct: 581 FDAIQWKNNAVTWNAMISGLAQHG 604



 Score =  192 bits (489), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 132/488 (27%), Positives = 248/488 (50%), Gaps = 18/488 (3%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           + ++S+L  C+       G  +H  +LS G G+N Y+ + L+ +Y + G    A+++F+ 
Sbjct: 27  ARYASLLQKCAEQKSAAAGKLVHQHILSSGCGVNRYLQNHLIFMYAKCGCLQDAVEVFEL 86

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           LP  N+ +W  ++ A+ +     EVL  + KM+ +G +P+   F  ++  CS    L+EG
Sbjct: 87  LPCPNVFSWTALITAYAKEGHLREVLGFFRKMQLDGTKPDAFVFSTVLTACSSAGALNEG 146

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K +H  V+  G ++  + V NA+V+ Y  CG + EAK  F+ +P  +++SWN++++  A 
Sbjct: 147 KAIHDCVVLAG-METQV-VGNAIVNLYGKCGRVHEAKAVFERLPERNLVSWNALIAANAQ 204

Query: 291 YDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                DA+++F  M L    RP+  +FV  ++  S   ++  GK  H  + + GFD   +
Sbjct: 205 NGHCKDAMQVFQLMDLDGSVRPNDATFVSVVDACSNLLDLPRGKSTHERIIRTGFD-SYL 263

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGR---SLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            V ++L +MYGKC  ++ +  VFE    R   S+     ++ +  H+G++ +A  +F  M
Sbjct: 264 FVGNSLVNMYGKCGSVDHARLVFEKMRLRDVLSVYSWTVIIAAFAHNGHLLEAFVLFYKM 323

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             EG+  ++VT  T L+A +  A       R+ H      G E +  +  + +  +++ G
Sbjct: 324 DLEGVLPNKVTFVTVLRACTTLAQCEKIFARVKHL-----GLELDTTLGTAFVSTFAKLG 378

Query: 467 HIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
            +  +  VFE +  S NVV +T ++  Y++ G  R A D+ + M      P+ VTF+ V+
Sbjct: 379 DLAAARDVFENLGSSRNVVSWTVMIWAYAQQGFIRAAFDLYKRM---DCEPNAVTFMAVM 435

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             C     +   + +   M +  G ++D     C++ M G+ G +D A  + +       
Sbjct: 436 DSCLRPEDLPRAEQIHAHMVA-SGFESDVVLQVCLVTMYGKCGSVDSAWSIFENLK-ERS 493

Query: 586 CMMWSSLL 593
            + W+S+L
Sbjct: 494 VVAWNSML 501


>gi|297804224|ref|XP_002869996.1| putative protein [Arabidopsis lyrata subsp. lyrata]
 gi|297315832|gb|EFH46255.1| putative protein [Arabidopsis lyrata subsp. lyrata]
          Length = 1251

 Score =  273 bits (699), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 167/590 (28%), Positives = 291/590 (49%), Gaps = 7/590 (1%)

Query: 77   TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRV 136
             +N  +        P ++L L+ EM   G + +  TF  V   C+   +      +H  +
Sbjct: 615  AWNFQVREAVNRNDPVESLLLFREMKRGGFEPNNFTFPFVAKACARLAYIGYCEMVHTHL 674

Query: 137  LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
            +   F  ++++G+  VD++++      A  +F+ +P R+  TWN ML  FC+    D+V 
Sbjct: 675  IKSPFWSDVFVGTATVDMFVKCDSLDYAAKVFERMPVRDATTWNAMLSGFCQSGHTDKVF 734

Query: 197  RMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256
             ++ +M+ + + P+ ++   +++  S    L   K +H+  I+LG VD+   V+N  +  
Sbjct: 735  SLFREMRLDEIPPDSVTVMTLIQSASFEKSLKLLKVMHAFGIRLG-VDLQATVSNTWISA 793

Query: 257  YSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
            Y  CG L  AK  F+ I   D  V+SWNS+   +A +   FDA   +  M     +P + 
Sbjct: 794  YGKCGDLDSAKLVFEAIDRGDRTVVSWNSVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLS 853

Query: 315  SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
            +F+           +  G+ IH +   LG D   +   +    MY K     S+  +F+ 
Sbjct: 854  TFINLAASCQNPQTLTQGRLIHSHAIHLGTDQ-DIEAINTFISMYSKSGDSCSARLLFDI 912

Query: 375  APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
             P R+      +++     G++ +A+ +F  M   G+  D VTL + +       S  +G
Sbjct: 913  MPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISGCGKFGSLEIG 972

Query: 435  SCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
              + +   A   G  + N+ V  +L+D YS+CG I+ +  +F+      +V +T+++ GY
Sbjct: 973  --KWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEKTMVTWTTMIAGY 1030

Query: 494  SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
            + NG+  EA+++   MI     P+ +TFL VL  C HSG +++G   F+ MK VY I   
Sbjct: 1031 ALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWEYFHIMKQVYNISPG 1090

Query: 554  RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
              HYSCM+D+LGR G LD+A EL+       D  +W +LL +C++H N  I  + A+ L 
Sbjct: 1091 LDHYSCMVDLLGRKGKLDEALELIHNMSAKPDAGIWGALLSACKIHRNVKIAEQAADSLF 1150

Query: 614  ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             LEP   A Y ++SN Y+  G ++   +IR       + +  G S+I+VN
Sbjct: 1151 NLEPQMAAPYVEMSNIYAAAGMWDGFARIRSMMKLWNIKKYPGESVIQVN 1200



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 124/544 (22%), Positives = 239/544 (43%), Gaps = 47/544 (8%)

Query: 8    PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
            P   T   +A  C  +  +    ++ ++   +P   +++    T+D FVK   L+ A K+
Sbjct: 646  PNNFTFPFVAKACARLAYIGYCEMVHTHLIKSPFWSDVFVGTATVDMFVKCDSLDYAAKV 705

Query: 67   FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
            F+ MP RD  T+N ++SG  +  H  +   L+ EM    I   + T   V+++  +A F 
Sbjct: 706  FERMPVRDATTWNAMLSGFCQSGHTDKVFSLFREMRLDEIPPDSVT---VMTLIQSASF- 761

Query: 127  TEGIQI----HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLATWN 180
             + +++    H   + LG  L   + +  +  Y + G    A  +F+ +   +R + +WN
Sbjct: 762  EKSLKLLKVMHAFGIRLGVDLQATVSNTWISAYGKCGDLDSAKLVFEAIDRGDRTVVSWN 821

Query: 181  LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
             + +AF       +    Y  M  +  +P+  +F  +   C     L +G+ +HSH I L
Sbjct: 822  SVFKAFAVFGEAFDAFGHYRLMLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHL 881

Query: 241  GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
            G  D +I   N  +  YS  G    A+  FD +P    +SW  ++S YA+   + +AL L
Sbjct: 882  G-TDQDIEAINTFISMYSKSGDSCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALAL 940

Query: 301  FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
            F  M      P + + +  ++   + G++  GK I G     G    +V V +AL DMY 
Sbjct: 941  FHAMAKTGVNPDLVTLLSLISGCGKFGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYS 1000

Query: 361  KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
            KC  I+ +  +F++   +++    +++     +G   +A+E+F  M+D     + +T   
Sbjct: 1001 KCGSIDEARDIFDNTSEKTMVTWTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLA 1060

Query: 421  TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
             L+A +             H  +++ G+E                 +  +  QV+    S
Sbjct: 1061 VLQACA-------------HSGSLEKGWE-----------------YFHIMKQVYN--IS 1088

Query: 481  PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            P +  ++ +++   R G   EAL+++  M  +   PD   +  +L+ C     VK  +  
Sbjct: 1089 PGLDHYSCMVDLLGRKGKLDEALELIHNMSAK---PDAGIWGALLSACKIHRNVKIAEQA 1145

Query: 541  FNSM 544
             +S+
Sbjct: 1146 ADSL 1149



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 72/273 (26%), Positives = 127/273 (46%), Gaps = 9/273 (3%)

Query: 1    MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
            ML  +  P + T   LA +C +   L+   L+ S+        +I + N  I  + KSG 
Sbjct: 843  MLRDEFKPDLSTFINLAASCQNPQTLTQGRLIHSHAIHLGTDQDIEAINTFISMYSKSGD 902

Query: 60   LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
              SA+ LFD MP+R  V++ ++ISG  +     +AL L+  M   G+     T  S++S 
Sbjct: 903  SCSARLLFDIMPSRTCVSWTVMISGYAEKGDMDEALALFHAMAKTGVNPDLVTLLSLISG 962

Query: 120  CSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C   G    G  I  R    G    N+ + + L+D+Y + G    A D+FD   E+ + T
Sbjct: 963  CGKFGSLEIGKWIDGRADMYGCKKDNVMVCNALIDMYSKCGSIDEARDIFDNTSEKTMVT 1022

Query: 179  WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
            W  M+  +       E + +++KM     +PN ++F  +++ C+    L++G + + H++
Sbjct: 1023 WTTMIAGYALNGIFLEAMELFSKMIDLDYKPNHITFLAVLQACAHSGSLEKGWE-YFHIM 1081

Query: 239  KLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            K       ++  +  +D YS    L+  K   D
Sbjct: 1082 K------QVYNISPGLDHYSCMVDLLGRKGKLD 1108


>gi|347954530|gb|AEP33765.1| organelle transcript processing 82, partial [Lepidium sativum]
          Length = 672

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 155/534 (29%), Positives = 287/534 (53%), Gaps = 37/534 (6%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +F+ + E NL  WN M R     S     L++Y  M + G+ PN  SF ++++ C+ 
Sbjct: 18  AISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKSCAK 77

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA----------------- 266
              L EG+Q+H HV+KLG+ D++++V  +L+  Y+  G L +A                 
Sbjct: 78  SKALIEGQQIHGHVLKLGY-DLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSYTA 136

Query: 267 --------------KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
                         +K FD I V DV+SWN+++S Y +     +ALEL+  M     +P 
Sbjct: 137 LITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVKPD 196

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             + V  ++  +++G++  G+Q+H ++   GF   ++ + + L D+Y KC  +E++  +F
Sbjct: 197 ESTMVTVVSACAQSGSIELGRQLHSWIEDHGFG-SNIKIVNVLIDLYSKCGEVETACGLF 255

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           +    + +   N+L+    H    K+A+ +F  M+  G   ++VT+ + L A +   + +
Sbjct: 256 QGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAID 315

Query: 433 LGSCRLLHCCAIK--SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           +G  R +H    K   G  +  ++  SL+D Y++CG IE + QVF+ + + ++  + +++
Sbjct: 316 IG--RWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMI 373

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            G++ +G    A D+   M + G+ PD +TF+ +L+ C+HSGM+  G+ +F SM   Y I
Sbjct: 374 FGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKI 433

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
               +HY CMID+LG  G+  +A+E+++  P   D ++W SLL++C++H N  +G   A 
Sbjct: 434 TPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQ 493

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            L+++EP +   Y  +SN Y+  G ++   +IR     + + +  G S IE++S
Sbjct: 494 NLIKIEPENPGSYVLLSNIYATAGRWDQVAKIRTLLNDKGIKKAPGCSSIEIDS 547



 Score =  165 bits (417), Expect = 7e-38,   Method: Compositional matrix adjust.
 Identities = 123/467 (26%), Positives = 213/467 (45%), Gaps = 37/467 (7%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A  +F+ +   +++ +N +  G         AL LY  M+S G+  ++ +F  +L  
Sbjct: 15  LSYAISIFETIQEPNLLIWNTMFRGHALNSDSVTALKLYVCMISLGLLPNSYSFPFLLKS 74

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-----------PSVR----- 163
           C+ +    EG QIH  VL LG+ L++Y+ + L+ +Y + G            S R     
Sbjct: 75  CAKSKALIEGQQIHGHVLKLGYDLDMYVNTSLISMYAQNGRLEDAHKVFDRSSHRHVVSY 134

Query: 164 ---------------ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
                          A  LFDE+  +++ +WN M+  + E     E L +Y  M    V+
Sbjct: 135 TALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMMKTNVK 194

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+  +   +V  C+    ++ G+QLHS +   G+   NI + N L+D YS CG +  A  
Sbjct: 195 PDESTMVTVVSACAQSGSIELGRQLHSWIEDHGF-GSNIKIVNVLIDLYSKCGEVETACG 253

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +   DVISWN+++  +   +L  +AL LF  M    + P+  + +  L   +  G 
Sbjct: 254 LFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGA 313

Query: 329 VYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           +  G+ IH Y+ K   G  + S  + ++L DMY KC  IE++  VF+S   RSL   N++
Sbjct: 314 IDIGRWIHVYINKRLKGVTNAS-SLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAM 372

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +      G    A ++F  M   GI  D++T    L A S S   +LG   +    +   
Sbjct: 373 IFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGR-HIFRSMSQDY 431

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
                +     ++D    CG  + + ++   +P  P+ V + S++  
Sbjct: 432 KITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPDGVIWCSLLKA 478



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 96/361 (26%), Positives = 185/361 (51%), Gaps = 4/361 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G++N+A+KLFDE+  +D+V++N +ISG  +  + K+AL LY +M+
Sbjct: 130 HVVSYTALITGYASRGYINNARKLFDEISVKDVVSWNAMISGYVETCNFKEALELYKDMM 189

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K   ST  +V+S C+ +G    G Q+H  +   GFG N+ I + L+DLY + G   
Sbjct: 190 KTNVKPDESTMVTVVSACAQSGSIELGRQLHSWIEDHGFGSNIKIVNVLIDLYSKCGEVE 249

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  L ++++ +WN ++     ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 250 TACGLFQGLAKKDVISWNTLIGGHTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACA 309

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++ K L  V     +  +L+D Y+ CG +  AK+ FD +    + SW
Sbjct: 310 HLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSW 369

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +     A +LF +M+     P   +FV  L+  S +G +  G+ I   +++
Sbjct: 370 NAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQ 429

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                  +     + D+ G C + + +  +  + P   +E    +  SLL +  + + VE
Sbjct: 430 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMP---MEPDGVIWCSLLKACKMHNNVE 486

Query: 402 M 402
           +
Sbjct: 487 L 487


>gi|224060327|ref|XP_002300144.1| predicted protein [Populus trichocarpa]
 gi|222847402|gb|EEE84949.1| predicted protein [Populus trichocarpa]
          Length = 666

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 159/508 (31%), Positives = 274/508 (53%), Gaps = 15/508 (2%)

Query: 167 LFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           LF++  +R ++ +WN ++          E LR ++ M+   ++PN  +F   ++ CS   
Sbjct: 37  LFNKYFDRTDVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L+ GKQ H   +  G+ + ++FV++AL+D YS CG L  A+  FD IP  ++++W S++
Sbjct: 97  DLNSGKQAHQQALVFGF-ESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLI 155

Query: 286 SIYADYDLIFDALELFFRMQLCRKR-------PSIRS--FVEFLNFASRTGNVYFGKQIH 336
           + Y   D   +AL +F      +          S+ S   +  L+  SR  N    + +H
Sbjct: 156 TGYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVH 215

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G   K+G D   + V++ L D Y KC  +  S  VF+    + +   NS++     +G  
Sbjct: 216 GVAIKVGLDK-VMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLS 274

Query: 397 KDAVEMFGFMVDEGIG-LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
            DA E+F  M+  G G  +EVTLST L A +   +  +G C  LH   IK G+ +N+ ++
Sbjct: 275 TDAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMC--LHDQVIKMGYVNNVIMA 332

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            S++D Y +CG  E++   F+ +   NV  +T+++ GY  +G  REALD+   MI  G+ 
Sbjct: 333 TSIIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVK 392

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P+ +TF+ VLA C+H+G ++EG   FN+M   Y ++   +HY CM+D+LGRAG + +A  
Sbjct: 393 PNYITFISVLAACSHAGFLEEGWRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYN 452

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L++      D ++W SLL +CR+H +  +    A  L +L+P +   Y  ++N Y++ G 
Sbjct: 453 LIKSMKVRRDFVLWGSLLAACRIHKDVELAEISARELFKLDPSNCGYYVLLANIYADAGR 512

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEVN 663
           ++   ++R     R L +  G+SL+E+ 
Sbjct: 513 WKDVERMRILVKDRGLVKPPGYSLVELK 540



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/425 (24%), Positives = 200/425 (47%), Gaps = 16/425 (3%)

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K FD     D+ ++N LI+   +     ++L  +  M    IK + STF   +  CS   
Sbjct: 40  KYFDRT---DVYSWNSLIAELARGGDSCESLRAFSWMRKLDIKPNRSTFPCAIKSCSALF 96

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G Q H + L  GF  +L++ S L+D+Y + G    A  LFDE+P RN+ TW  ++ 
Sbjct: 97  DLNSGKQAHQQALVFGFESDLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLIT 156

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNG---------LSFCYMVRGCSIGMLLDEGKQLHS 235
            + +     E L ++ +   E  E NG         ++   ++  CS        + +H 
Sbjct: 157 GYVQNDDAHEALMVFKEFLFEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHG 216

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
             IK+G +D  + V N L+D Y+ CG +  ++K FD +   DV+SWNS++++YA   L  
Sbjct: 217 VAIKVG-LDKVMGVENTLLDAYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLST 275

Query: 296 DALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
           DA E+F  M +    + +  +    L   +  G +  G  +H  V K+G+ + +V + ++
Sbjct: 276 DAFEVFHGMLKAGGGKYNEVTLSTLLLACAHEGALRVGMCLHDQVIKMGYVN-NVIMATS 334

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           + DMY KC   E +   F+    +++    +++      G  ++A+++F  M+  G+  +
Sbjct: 335 IIDMYCKCGQAEMARNAFDGMKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPN 394

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
            +T  + L A S +     G  R  +  + +   E  +     ++D   R G+I+ ++ +
Sbjct: 395 YITFISVLAACSHAGFLEEG-WRWFNAMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNL 453

Query: 475 FEKIP 479
            + + 
Sbjct: 454 IKSMK 458



 Score =  134 bits (337), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/387 (25%), Positives = 186/387 (48%), Gaps = 24/387 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ S+  ID + K G L++A+ LFDE+P R++VT+  LI+G  +     +AL ++ E +
Sbjct: 116 DLFVSSALIDMYSKCGKLSNARVLFDEIPRRNIVTWTSLITGYVQNDDAHEALMVFKEFL 175

Query: 103 ---SHGIKESAST------FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
              S G  E   T        SVLS CS          +H   + +G    + + + L+D
Sbjct: 176 FEKSEGNGEEVGTSVDSVAMISVLSACSRVSNKAVSEGVHGVAIKVGLDKVMGVENTLLD 235

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGL 212
            Y + G    +  +FD++ E+++ +WN M+  + +     +   +++ M KA G + N +
Sbjct: 236 AYAKCGEVSLSRKVFDDMAEKDVVSWNSMIAVYAQNGLSTDAFEVFHGMLKAGGGKYNEV 295

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  C+    L  G  LH  VIK+G+V+ N+ +A +++D Y  CG    A+ +FD 
Sbjct: 296 TLSTLLLACAHEGALRVGMCLHDQVIKMGYVN-NVIMATSIIDMYCKCGQAEMARNAFDG 354

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV--- 329
           +   +V SW ++++ Y  +    +AL++F++M     +P+  +F+  L   S  G +   
Sbjct: 355 MKEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEG 414

Query: 330 --YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
             +F    H Y  + G +H        + D+ G+   I+ +  + +S   R       L 
Sbjct: 415 WRWFNAMSHEYNVEPGVEH-----YGCMVDLLGRAGYIKEAYNLIKSMKVRRDFV---LW 466

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLD 414
            SLL +  I   VE+      E   LD
Sbjct: 467 GSLLAACRIHKDVELAEISARELFKLD 493



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 51/190 (26%), Positives = 88/190 (46%), Gaps = 10/190 (5%)

Query: 12  TITTLAPTCTSIVPLSSSLLL-DSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T++TL   C     L   + L D   +     N+  +   ID + K G    A+  FD M
Sbjct: 296 TLSTLLLACAHEGALRVGMCLHDQVIKMGYVNNVIMATSIIDMYCKCGQAEMARNAFDGM 355

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +++ ++  +I+G G     ++AL ++ +M+  G+K +  TF SVL+ CS+AGF  EG 
Sbjct: 356 KEKNVRSWTAMIAGYGMHGFAREALDVFYQMIWAGVKPNYITFISVLAACSHAGFLEEGW 415

Query: 131 QIHCRVLSLGFGLNLYIGSP----LVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           +      ++    N+  G      +VDL  R G    A +L   +   R+   W  +L A
Sbjct: 416 RWFN---AMSHEYNVEPGVEHYGCMVDLLGRAGYIKEAYNLIKSMKVRRDFVLWGSLLAA 472

Query: 186 FCELSRPDEV 195
            C + +  E+
Sbjct: 473 -CRIHKDVEL 481


>gi|357167761|ref|XP_003581320.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Brachypodium distachyon]
          Length = 773

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 175/621 (28%), Positives = 317/621 (51%), Gaps = 22/621 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV----SHGIKES 109
           + + G L  A KLFDEM  RD+V +  ++SGC +     + +    +M+      G + +
Sbjct: 161 YARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKGICYLVQMIRLAGDSGARPN 220

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           + T  S L  C   G  + G  +H   +  G      + S L  +Y +   +  A  LF 
Sbjct: 221 SRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCALVVSALFSMYSKCDMTEDACILFP 280

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           EL E+++ +W  ++ A+C      E + ++ +M+  G++P+ +    ++ G      ++ 
Sbjct: 281 ELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCVLSGLGSSANVNR 340

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GK  H+ +I+  + D ++ +AN+L+  Y     +  A   F  +   D  SW+ +V+ Y 
Sbjct: 341 GKAFHAVIIRRNFGD-SVLIANSLISMYGKFELVDVAGTVFGMLHQRDDESWSLMVAGYC 399

Query: 290 DYDLIFDALELFFRMQLCRKRPS----IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
              L    LEL+ +MQ CR        I S V  ++  SR G +  G+ +H Y  K   D
Sbjct: 400 KAGLDVKCLELYRQMQ-CRDHDEFLCDITSLVSAISSCSRLGRLRLGQSVHCYSIKCLLD 458

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAP-GRSLECCNSLMTSLLHSGNIKDAVEMFG 404
             S+   ++L  MYG+C   E +  +F  A   R +   N+L++S  H G   DA+ ++G
Sbjct: 459 ENSI--TNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYG 516

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDA 461
            M+ E +  +  TL T      +SA ANL +     LLH      G ES++++S +L+D 
Sbjct: 517 QMLTEDVKPNSSTLITV-----ISACANLAALEHGELLHSYVKNMGLESDVSISTALVDM 571

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG +  +  +F+ +   +VV +  +++GY  +G   +AL +   M    + P+ +TF
Sbjct: 572 YTKCGQLGTARGIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTF 631

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L +L+ C H+G+V EG+ +F  M   Y ++ + +HY+CM+D+LG++G+L +AE+L+   P
Sbjct: 632 LAILSACCHAGLVDEGRKLFIRMGG-YRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMP 690

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  +W +LL +C+VH N  +G RVA      +P +   Y  +SN Y    +++   +
Sbjct: 691 IKPDGGVWGTLLSACKVHDNFEMGLRVAKKAFSSDPRNDGYYILMSNSYGSAEKWDEIEK 750

Query: 642 IRETALARKLTRDIGHSLIEV 662
           +R+T     + + +G S ++V
Sbjct: 751 LRDTMKNYGVEKGVGWSAVDV 771



 Score =  128 bits (322), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 116/477 (24%), Positives = 214/477 (44%), Gaps = 18/477 (3%)

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           +++H    + G        + LV  Y   G    A   F   P  +   WN +LR+    
Sbjct: 32  LRLHALASTSGLSSRPDFAAKLVSAYSSSGLPGFATLAFSASPCPDTFLWNSLLRSHHCA 91

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV--DVNI 247
           S  D  L  + +M+A G  P+  +        +    L  G  +HS+ +K G +  D ++
Sbjct: 92  SDFDSALSAHRRMRASGARPSRFTAPLAASAAAELAALPVGTSVHSYSVKFGLLAGDGSV 151

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            V+++LV  Y+ CGSL +A K FD +   DV++W ++VS             + + +Q+ 
Sbjct: 152 AVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVRNGECGKG--ICYLVQMI 209

Query: 308 R------KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           R       RP+ R+    L      G +  G+ +HGY  K G    ++ V SAL  MY K
Sbjct: 210 RLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRDCAL-VVSALFSMYSK 268

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C++ E +  +F     + +     L+ +    G  ++AVE+F  M   G+  DEV +S  
Sbjct: 269 CDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEMEQSGLQPDEVLVSCV 328

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L  L  SA+ N G  +  H   I+  F  ++ ++ SL+  Y +   ++++  VF  +   
Sbjct: 329 LSGLGSSANVNRG--KAFHAVIIRRNFGDSVLIANSLISMYGKFELVDVAGTVFGMLHQR 386

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRG---LIPDKVTFLCVLAGCNHSGMVKEGQ 538
           +   ++ ++ GY + G+  + L++   M  R     + D  + +  ++ C+  G ++ GQ
Sbjct: 387 DDESWSLMVAGYCKAGLDVKCLELYRQMQCRDHDEFLCDITSLVSAISSCSRLGRLRLGQ 446

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
            V     S+  +  +    + +I M GR G  + A ++        D + W++L+ S
Sbjct: 447 SVH--CYSIKCLLDENSITNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISS 501



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/250 (28%), Positives = 132/250 (52%), Gaps = 7/250 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           +N  I  + + G+   A K+F      RD+VT+N LIS          AL LY +M++  
Sbjct: 463 TNSLIGMYGRCGNFELACKIFAVAKLRRDVVTWNALISSYSHVGRSNDALSLYGQMLTED 522

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +K ++ST  +V+S C+N      G  +H  V ++G   ++ I + LVD+Y + G    A 
Sbjct: 523 VKPNSSTLITVISACANLAALEHGELLHSYVKNMGLESDVSISTALVDMYTKCGQLGTAR 582

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
            +FD + +R++ TWN+M+  +      ++ L+++++M+A  ++PN L+F  ++  C    
Sbjct: 583 GIFDSMLQRDVVTWNVMISGYGMHGEANQALKLFSEMEAGSIKPNSLTFLAILSACCHAG 642

Query: 226 LLDEGKQLHSHVIKLGW--VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWN 282
           L+DEG++L    I++G   ++ N+     +VD     G L EA+     +P+  D   W 
Sbjct: 643 LVDEGRKL---FIRMGGYRLEPNLKHYACMVDLLGKSGLLQEAEDLVLAMPIKPDGGVWG 699

Query: 283 SIVSIYADYD 292
           +++S    +D
Sbjct: 700 TLLSACKVHD 709



 Score = 45.8 bits (107), Expect = 0.084,   Method: Compositional matrix adjust.
 Identities = 50/199 (25%), Positives = 89/199 (44%), Gaps = 39/199 (19%)

Query: 439 LHCCAIKSGF---ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
           +H  ++K G    + ++AVS SL+  Y+RCG +  + ++F+++   +VV +T++++G  R
Sbjct: 135 VHSYSVKFGLLAGDGSVAVSSSLVYMYARCGSLGDAVKLFDEMVERDVVAWTAVVSGCVR 194

Query: 496 NGMGREALDMLEVMIQ----RGLIPDKVTFLCVLAGCN-----------HSGMVKEG--- 537
           NG   + +  L  MI+     G  P+  T    L  C            H   VKEG   
Sbjct: 195 NGECGKGICYLVQMIRLAGDSGARPNSRTMESGLEACGVLGELSAGRCLHGYAVKEGIRD 254

Query: 538 -QLVFNSMKSVYG---------------IDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
             LV +++ S+Y                 + D   ++ +I    R G+  +A EL Q+  
Sbjct: 255 CALVVSALFSMYSKCDMTEDACILFPELTEKDVVSWTGLIGAYCRRGLAREAVELFQEME 314

Query: 582 GGGDCMMWSSLLRSCRVHG 600
             G  +    +L SC + G
Sbjct: 315 QSG--LQPDEVLVSCVLSG 331


>gi|125579001|gb|EAZ20147.1| hypothetical protein OsJ_35746 [Oryza sativa Japonica Group]
          Length = 601

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 172/597 (28%), Positives = 309/597 (51%), Gaps = 16/597 (2%)

Query: 70  MPARDMVTYNLLISGC---GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           MP RD+V++N L+S     G F   ++AL     M+  G   + ++  SV+  C      
Sbjct: 1   MPERDVVSWNSLVSAFLVNGMFHDARRALV---SMMRSGFPLNVASLVSVVPACGTEQEE 57

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G+ IH   + +G    + + + LVD+Y + G    ++ +FD + E+N  +WN  +  F
Sbjct: 58  KFGLSIHALAVKVGLNTMVNLANALVDMYGKFGDVEASMQVFDGMLEQNEVSWNSAIGCF 117

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                  +VLRM+ KM    V P  ++   ++         D G+++H + IK   +D++
Sbjct: 118 LNAGFYGDVLRMFRKMSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRA-MDLD 176

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           IFVAN+LVD Y+  GSL +A   F+ +   +V+SWN++++         +A  L   MQ 
Sbjct: 177 IFVANSLVDMYAKFGSLEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQK 236

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG--FDHGSVHVQSALTDMYGKCNV 364
             + P+  + V  L   +R  ++  GKQIH +  + G  FD   + + +AL DMY KC  
Sbjct: 237 SGECPNSITLVNVLPACARMASLKMGKQIHAWSIRRGLMFD---LFISNALIDMYSKCGQ 293

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +  +FE +    +   N+L+     S    +++ +F  M   GI  D V+    L A
Sbjct: 294 LSLARNIFERSEKDDVSY-NTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSA 352

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +  +    G  + +HC  ++     +  +S SL+D Y++ G +  + ++F KI   +V 
Sbjct: 353 CTNLSVFKHG--KEIHCVLVRRLLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVA 410

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + +++ GY  +G    A ++ E+M   GL  D V+++ VLA C+H G+V +G+  F+ M
Sbjct: 411 SWNTMILGYGMHGQIDIAFELFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQM 470

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
            +   I+  + HY+CM+D+LGRAG L K  E+++  P   +  +W +LL +CR+HGN  +
Sbjct: 471 VA-QNIEPQQMHYACMVDLLGRAGQLSKCAEIIRDMPFPANSDVWGALLGACRIHGNIEL 529

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            +  A  L EL+P     Y+ + N Y+E G +  + +IR+   +RK+ ++  +S ++
Sbjct: 530 AQWAAEHLFELKPEHSGYYTLMINMYAETGRWNEANKIRKLMKSRKVQKNPAYSWVQ 586



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 88/377 (23%), Positives = 176/377 (46%), Gaps = 4/377 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M    ++P   T+++L P    +        +  Y       L+I+ +N  +D + K G 
Sbjct: 133 MSEHNVMPGSITLSSLLPALVELGSFDLGREVHGYSIKRAMDLDIFVANSLVDMYAKFGS 192

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A  +F++M  R++V++N +I+   +     +A  L  +M   G   ++ T  +VL  
Sbjct: 193 LEKASTIFEQMKDRNVVSWNAMIANLVQNGAETEAFRLVTDMQKSGECPNSITLVNVLPA 252

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+       G QIH   +  G   +L+I + L+D+Y + G    A ++F E  E++  ++
Sbjct: 253 CARMASLKMGKQIHAWSIRRGLMFDLFISNALIDMYSKCGQLSLARNIF-ERSEKDDVSY 311

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  + +     E L ++ +M++ G++ + +SF   +  C+   +   GK++H  +++
Sbjct: 312 NTLILGYSQSPWCFESLLLFKQMRSVGIDYDAVSFMGALSACTNLSVFKHGKEIHCVLVR 371

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              +  + F++N+L+D Y+  G L+ A K F+ I   DV SWN+++  Y  +  I  A E
Sbjct: 372 R-LLSGHPFLSNSLLDLYTKGGMLVTASKIFNKITKKDVASWNTMILGYGMHGQIDIAFE 430

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  M+         S++  L   S  G V  GK+    +     +   +H  + + D+ 
Sbjct: 431 LFELMKGDGLDYDHVSYIAVLAACSHGGLVDKGKKYFSQMVAQNIEPQQMHY-ACMVDLL 489

Query: 360 GKCNVIESSVAVFESAP 376
           G+   +     +    P
Sbjct: 490 GRAGQLSKCAEIIRDMP 506


>gi|225423499|ref|XP_002274432.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 738

 Score =  273 bits (698), Expect = 2e-70,   Method: Compositional matrix adjust.
 Identities = 174/586 (29%), Positives = 297/586 (50%), Gaps = 45/586 (7%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL--YMRMGPSVRALDLFDELP 172
           ++LS C +   +    QIH +++  G     +  S L++       G    AL LF+ + 
Sbjct: 37  TLLSTCKS---FQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           + N   WN M+R     S P   +  Y +M   GVEPN  +F ++++ C+      EGKQ
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 233 LHSHVIKLGWVD--------VNIFVAN----------------------ALVDFYSACGS 262
           +H HV+KLG           +N++  N                      AL+  Y+  G 
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 263 LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
           L +A++ F+ IPV D +SWN++++ YA      +AL  F  M+     P+  + V  L+ 
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
            +++G++  G  +  ++     DHG   ++ + +AL DMY KC  ++ +  +FE    + 
Sbjct: 274 CAQSGSLELGNWVRSWIE----DHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKD 329

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   N ++    H  + K+A+ +F  M    +  ++VT  + L A +   + +LG  + +
Sbjct: 330 IISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG--KWI 387

Query: 440 HCCAIKSGFE-SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           H    K     +N ++  SL+D Y++CG+IE + QVF  +   ++  + ++++G + +G 
Sbjct: 388 HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGH 447

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
              AL++   M   G  PD +TF+ VL+ C+H+G+V+ G+  F+SM   Y I    QHY 
Sbjct: 448 ANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYG 507

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           CMID+LGRAG+ D+AE L++      D  +W SLL +CRVHGN  +G   A  L ELEP 
Sbjct: 508 CMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPE 567

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +   Y  +SN Y+  G ++   +IR     + + +  G S IEV+S
Sbjct: 568 NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKVPGCSSIEVDS 613



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 196/408 (48%), Gaps = 32/408 (7%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+L+ A  LF+ +   +   +N +I G      P  A+  Y  M+  G++ ++ TF  +L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP-----------SVR--- 163
             C+  G   EG QIH  VL LG   + ++ + L+++Y + G            S+R   
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 164 -----------------ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
                            A  LF+E+P R+  +WN M+  + +  R +E L  + +MK   
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           V PN  +   ++  C+    L+ G  + S +   G +  N+ + NAL+D YS CG L +A
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHG-LGSNLRLVNALIDMYSKCGDLDKA 318

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           +  F+ I   D+ISWN ++  Y+  +   +AL LF +MQ     P+  +FV  L   +  
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G +  GK IH Y+ K      +  + ++L DMY KC  IE++  VF     +SL   N++
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           ++ L   G+   A+E+F  M DEG   D++T    L A S +    LG
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 159/286 (55%), Gaps = 4/286 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I  +   G L+ A++LF+E+P RD V++N +I+G  +    ++AL  + EM    +  + 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           ST  +VLS C+ +G    G  +   +   G G NL + + L+D+Y + G   +A DLF+ 
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + E+++ +WN+M+  +  ++   E L ++ KM+   VEPN ++F  ++  C+    LD G
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 231 KQLHSHVIK--LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           K +H+++ K  LG  + +++   +L+D Y+ CG++  AK+ F  +    + SWN+++S  
Sbjct: 385 KWIHAYIDKKFLGLTNTSLWT--SLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGL 442

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
           A +     ALELF +M+     P   +FV  L+  S  G V  G+Q
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M    + P   T+ T+   C     L     + S+ + +    N+   N  ID + K G 
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGD 314

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A+ LF+ +  +D++++N++I G       K+AL L+ +M    ++ +  TF S+L  
Sbjct: 315 LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           C+  G    G  IH  +     GL N  + + L+D+Y + G    A  +F  +  ++L +
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+         +  L ++ +M+ EG EP+ ++F  ++  CS   L++ G+Q  S ++
Sbjct: 435 WNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMV 494

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAK---KSFDFIPVDDVISWNSIV 285
           +   +   +     ++D     G   EA+   K+ +  P  D   W S++
Sbjct: 495 EDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKP--DGAIWGSLL 542


>gi|225451187|ref|XP_002271063.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Vitis vinifera]
          Length = 805

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 163/609 (26%), Positives = 323/609 (53%), Gaps = 12/609 (1%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L +A+ +FD+      +  N ++ G  +    ++ L L+  M S  ++  + + +  L  
Sbjct: 80  LEAARYVFDQFFQPKGLLCNAMLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKA 139

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+++  Y  G++I    +  G   N ++GS ++   ++ G    A  +FD +P +++  W
Sbjct: 140 CASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMPNKDVVCW 199

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++  + +    D   +++ +M   G++P+ ++   +++ C     L  GK +H +V+ 
Sbjct: 200 NSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLG 259

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           LG +  +I V  + VD YS  G +  A+  F  +P  +++SWN+++S      L+ ++ +
Sbjct: 260 LG-LGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFD 318

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF R+        + + V  L   S+T ++  GK +HG   +  F+   + + +A+ D+Y
Sbjct: 319 LFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAIR-SFESNLI-LSTAIVDLY 376

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  ++ +  VF     R++    +++  L  +G+ +DA+ +F  M +EGI  + VT  
Sbjct: 377 SKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFV 436

Query: 420 TTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           +      V + A+LGS    R +H    + GF  +I    +L+D Y++CG I L+ ++F 
Sbjct: 437 SL-----VHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNMTALVDMYAKCGKINLAERIFS 491

Query: 477 KIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
               S +VV + S++ GY  +G G +A+ +   MI+ GL P++ TFL +L+ C+HS +V+
Sbjct: 492 HGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVE 551

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           +G  +FNSM+  + I    +HY+C++D+L RAG  ++A+ L+++ P      +  +LL  
Sbjct: 552 QGISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEKMPFQPGTAVLEALLSG 611

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           CR H N  +G + ++ L+ L+ ++  +Y  +SN Y+E   ++    IR     R L +  
Sbjct: 612 CRTHKNINLGIQTSDKLLALDAMNPGIYIMLSNIYAEARRWDKVDYIRGLMRNRGLKKTP 671

Query: 656 GHSLIEVNS 664
           G+SL+E  +
Sbjct: 672 GYSLVETGN 680



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 137/496 (27%), Positives = 237/496 (47%), Gaps = 14/496 (2%)

Query: 7   LPRVRTITTLAPTCT-SIVPLSSSL-------LLDSYCQPNPQLNIYSSNRTIDDFVKSG 58
           L R R +   + +CT ++   +SSL       ++ S  +   + N +  +  I   VK G
Sbjct: 120 LMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVEKGMEKNRFVGSSMISFLVKFG 179

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            +  A+++FD MP +D+V +N +I G  +      A  L+ EM   GIK S  T +S++ 
Sbjct: 180 KIGEAQRVFDGMPNKDVVCWNSIIGGYVQAGCFDVAFQLFFEMHGSGIKPSPITMTSLIQ 239

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            C   G    G  +H  VL LG G ++ + +  VD+Y +MG    A  +F ++P RNL +
Sbjct: 240 ACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGDIESARWVFYKMPTRNLVS 299

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+          E   +++++       +  +   +++GCS    L  GK LH   I
Sbjct: 300 WNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQGCSQTASLATGKILHGCAI 359

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           +    + N+ ++ A+VD YS CGSL +A   F+ +   +VI+W +++   A      DAL
Sbjct: 360 RS--FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVITWTAMLVGLAQNGHAEDAL 417

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            LF +MQ      +  +FV  ++  +  G++  G+ IHG++ +LGF    V++ +AL DM
Sbjct: 418 RLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLFRLGFAFDIVNM-TALVDM 476

Query: 359 YGKCNVIESSVAVFESAP-GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           Y KC  I  +  +F      + +   NS++T     G+   AV ++  M++EG+  ++ T
Sbjct: 477 YAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQAVGIYHKMIEEGLKPNQTT 536

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
             + L A S S     G   L +                 L+D  SR G  E +  + EK
Sbjct: 537 FLSLLSACSHSRLVEQG-ISLFNSMERDHNIRPIEKHYACLVDLLSRAGRFEEAQALIEK 595

Query: 478 IP-SPNVVCFTSIMNG 492
           +P  P      ++++G
Sbjct: 596 MPFQPGTAVLEALLSG 611



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 184/382 (48%), Gaps = 12/382 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGH 59
           M  + + P   T+T+L   C  I  L     +  Y       N I      +D + K G 
Sbjct: 222 MHGSGIKPSPITMTSLIQACGGIGNLKLGKCMHGYVLGLGLGNDILVLTSFVDMYSKMGD 281

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + SA+ +F +MP R++V++N +ISGC +     ++  L+  +V        +T  S+L  
Sbjct: 282 IESARWVFYKMPTRNLVSWNAMISGCVRNGLVGESFDLFHRLVRSSGGFDLTTIVSLLQG 341

Query: 120 CSNAGFYTEGIQIH-CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           CS       G  +H C + S  F  NL + + +VDLY + G   +A  +F+ + +RN+ T
Sbjct: 342 CSQTASLATGKILHGCAIRS--FESNLILSTAIVDLYSKCGSLKQATFVFNRMKDRNVIT 399

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  ML    +    ++ LR++ +M+ EG+  N ++F  +V  C+    L  G+ +H H+ 
Sbjct: 400 WTAMLVGLAQNGHAEDALRLFAQMQEEGIAANSVTFVSLVHSCAHLGSLKRGRSIHGHLF 459

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVSIYADYDLIFDA 297
           +LG+   +I    ALVD Y+ CG +  A++ F    +  DV+ WNS+++ Y  +   + A
Sbjct: 460 RLGFA-FDIVNMTALVDMYAKCGKINLAERIFSHGSISKDVVLWNSMITGYGMHGHGYQA 518

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ---SA 354
           + ++ +M     +P+  +F+  L+  S +  V  G  +   + +   DH    ++   + 
Sbjct: 519 VGIYHKMIEEGLKPNQTTFLSLLSACSHSRLVEQGISLFNSMER---DHNIRPIEKHYAC 575

Query: 355 LTDMYGKCNVIESSVAVFESAP 376
           L D+  +    E + A+ E  P
Sbjct: 576 LVDLLSRAGRFEEAQALIEKMP 597



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 77/165 (46%), Gaps = 2/165 (1%)

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           +S NL   +  H   I +   ++  V+  L+ AYS    +E +  VF++   P  +   +
Sbjct: 41  SSKNLIWVKSTHAQIITNSLSTDQFVATKLVKAYSDLRSLEAARYVFDQFFQPKGLLCNA 100

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY ++G  RE L++  +M  R L  D  +    L  C  S   + G  + +S     
Sbjct: 101 MLCGYLQSGRYRETLELFGLMRSRNLEVDSCSCTFALKACASSLDYEMGMEIISSAVE-K 159

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           G++ +R   S MI  L + G + +A+ +    P   D + W+S++
Sbjct: 160 GMEKNRFVGSSMISFLVKFGKIGEAQRVFDGMP-NKDVVCWNSII 203


>gi|255545144|ref|XP_002513633.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223547541|gb|EEF49036.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 777

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 176/606 (29%), Positives = 308/606 (50%), Gaps = 12/606 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID + +      A KLF  M + D V++  +I+ C +      AL +Y EM+   +  + 
Sbjct: 162 IDLYSRFDSTEDACKLFSYMDSGDTVSWTTVIASCVQAGKCSHALRIYMEMLEAQVSSNE 221

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF  +L+  S  G    G  IH   + LG  LNL + + LV++Y R      A+ +   
Sbjct: 222 FTFVRLLAASSFIGL-QYGKLIHAHAIVLGVKLNLVLKTALVNMYSRCQRIEDAIKVSKL 280

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            PE ++  W  ++    +  +  E +  ++KM+  GV  +  ++  M+  C   + LD G
Sbjct: 281 TPEYDVILWTAIISGLAQNMKFQEAVAAFHKMEISGVSASNFTYLSMLSVCISILSLDLG 340

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE-AKKSFDFIPVDDVISWNSIVSIYA 289
           +Q+HS VI+ G  D ++ V NALVD Y  C  ++E   + F  I   +VISW S+++ +A
Sbjct: 341 RQIHSRVIRTGLED-DVPVGNALVDMYMKCSCIVEHGLRMFRGIKSPNVISWTSLIAGFA 399

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           ++    D+L LF  M+    +P+  +    L   S   + Y   ++HG++ K   D+  V
Sbjct: 400 EHGFQQDSLNLFMEMRTVGVQPNSFTLSIVLRVCSAIKSPYQTLKLHGHIIKTKADYDVV 459

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V +AL D Y     ++ +  V +    R      SL T L   G  + A+ +   M + 
Sbjct: 460 -VGNALVDAYAGSGRVDDAWRVVKDMNQRDSITYTSLATRLNQMGYHELALSVISHMFNA 518

Query: 410 GIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            + +D  +L+        SASA+LG   + + LHC ++KSG    ++V+  L+D Y + G
Sbjct: 519 DVKIDGFSLTCFF-----SASASLGRIETGKQLHCYSLKSGLSCCLSVANGLIDLYGKYG 573

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +  + + F +I  P+VV +  +++G + NG    AL   + M  RG+ PD +TFL VL+
Sbjct: 574 LVHEARRAFTEITEPDVVSWNGLISGLASNGHISSALSAFDDMRLRGIQPDSITFLLVLS 633

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H G+V  G   F+SM+ ++ ++    HY C++D+LGRAG L++A  +++  P   D 
Sbjct: 634 TCSHGGLVDMGLQYFHSMREMHDVEPQSDHYVCLVDILGRAGRLEEAMNIIETMPLEPDA 693

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
            ++ +LL +C +H N  +G  VA   +EL P+D A +  +   Y + G +++  + R + 
Sbjct: 694 SIYKTLLAACSIHRNMNLGEDVARRGLELNPLDPAFHLLLVKLYDDCGRYDLGEKTRRSI 753

Query: 647 LARKLT 652
             +  T
Sbjct: 754 KQKGWT 759



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 149/542 (27%), Positives = 263/542 (48%), Gaps = 12/542 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A++ FDEMP RD+V++  ++S   K    ++AL ++D MV  G   +A TFSS+L  C  
Sbjct: 73  ARQFFDEMPCRDVVSWTGILSAHIKNERHEEALDIFDFMVLSGPYPNAFTFSSILRSCFA 132

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
            G ++ G +IH   +  GF  N  +GS L+DLY R   +  A  LF  +   +  +W  +
Sbjct: 133 LGDFSYGKRIHASSIKHGFESNQILGSSLIDLYSRFDSTEDACKLFSYMDSGDTVSWTTV 192

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLG 241
           + +  +  +    LR+Y +M    V  N  +F  ++   S IG  L  GK +H+H I LG
Sbjct: 193 IASCVQAGKCSHALRIYMEMLEAQVSSNEFTFVRLLAASSFIG--LQYGKLIHAHAIVLG 250

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            V +N+ +  ALV+ YS C  + +A K     P  DVI W +I+S  A      +A+  F
Sbjct: 251 -VKLNLVLKTALVNMYSRCQRIEDAIKVSKLTPEYDVILWTAIISGLAQNMKFQEAVAAF 309

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
            +M++     S  +++  L+      ++  G+QIH  V + G +   V V +AL DMY K
Sbjct: 310 HKMEISGVSASNFTYLSMLSVCISILSLDLGRQIHSRVIRTGLE-DDVPVGNALVDMYMK 368

Query: 362 CN-VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           C+ ++E  + +F      ++    SL+      G  +D++ +F  M   G+  +  TLS 
Sbjct: 369 CSCIVEHGLRMFRGIKSPNVISWTSLIAGFAEHGFQQDSLNLFMEMRTVGVQPNSFTLSI 428

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L+  S   S        LH   IK+  + ++ V  +L+DAY+  G ++ + +V + +  
Sbjct: 429 VLRVCSAIKSPY--QTLKLHGHIIKTKADYDVVVGNALVDAYAGSGRVDDAWRVVKDMNQ 486

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QL 539
            + + +TS+    ++ G    AL ++  M    +  D  +  C  +     G ++ G QL
Sbjct: 487 RDSITYTSLATRLNQMGYHELALSVISHMFNADVKIDGFSLTCFFSASASLGRIETGKQL 546

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
              S+KS  G+       + +ID+ G+ G++ +A     +     D + W+ L+     +
Sbjct: 547 HCYSLKS--GLSCCLSVANGLIDLYGKYGLVHEARRAFTEIT-EPDVVSWNGLISGLASN 603

Query: 600 GN 601
           G+
Sbjct: 604 GH 605



 Score = 94.0 bits (232), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 63/277 (22%), Positives = 124/277 (44%), Gaps = 1/277 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M +  + P   T++ +   C++I     +L L  +  +     ++   N  +D +  SG 
Sbjct: 414 MRTVGVQPNSFTLSIVLRVCSAIKSPYQTLKLHGHIIKTKADYDVVVGNALVDAYAGSGR 473

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A ++  +M  RD +TY  L +   +  + + AL +   M +  +K    + +   S 
Sbjct: 474 VDDAWRVVKDMNQRDSITYTSLATRLNQMGYHELALSVISHMFNADVKIDGFSLTCFFSA 533

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            ++ G    G Q+HC  L  G    L + + L+DLY + G    A   F E+ E ++ +W
Sbjct: 534 SASLGRIETGKQLHCYSLKSGLSCCLSVANGLIDLYGKYGLVHEARRAFTEITEPDVVSW 593

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++            L  ++ M+  G++P+ ++F  ++  CS G L+D G Q    + +
Sbjct: 594 NGLISGLASNGHISSALSAFDDMRLRGIQPDSITFLLVLSTCSHGGLVDMGLQYFHSMRE 653

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +  V+        LVD     G L EA    + +P++
Sbjct: 654 MHDVEPQSDHYVCLVDILGRAGRLEEAMNIIETMPLE 690


>gi|255591025|ref|XP_002535423.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223523164|gb|EEF26960.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 563

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 154/504 (30%), Positives = 286/504 (56%), Gaps = 6/504 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
            ++Y  N  +D + + G L  A+ +F+EM  RD+V++N LISG     +  +AL +Y E+
Sbjct: 66  FDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEALEIYYEL 125

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G+K    T SSVL  C       EG  IH  V  LG  +++ + + L+ +Y + G  
Sbjct: 126 RIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEKLGMNIDVIMSNGLLSMYFKFGRL 185

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
           + A  +F+++  ++  +WN ++  +C++   +E ++++ +M  +   P+ L+   ++R C
Sbjct: 186 MDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREM-VKRFRPDLLTITSVLRAC 244

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
            +   L+ GK +H ++++ G ++ ++  +N ++D Y+ CG L+ ++K+FD I   D +SW
Sbjct: 245 GLLRDLEFGKFVHDYILRSG-IEFDVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSVSW 303

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++++ Y       + ++LF +M++  K  SI +FV  L+ ++R  +   GK+IH  + K
Sbjct: 304 NTLINGYIQSRSYGEGVKLFKKMKMDLKPDSI-TFVTLLSISTRLADTELGKEIHCDLAK 362

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LGFD   V V +AL DMY KC  ++ S+ VFE+   R +   N+++ + + + +   A  
Sbjct: 363 LGFDSDLV-VSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWNTIIAACVQAEDCTLAFR 421

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           M   M +E +  D  TL   L   S+ A+   G  + +H C  K GFES + V  +L++ 
Sbjct: 422 MISQMRNEELIPDMGTLLGILPICSLIAAKRQG--KEVHACTFKFGFESTVPVGNALIEM 479

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+C +++   +VFE + + +VV +T++++ Y   G G++AL     M + G+IPD + F
Sbjct: 480 YSKCSNLKYCIRVFEDMKTKDVVTWTALVSAYGMYGEGKKALRAFAEMEEAGIIPDHIAF 539

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMK 545
           + ++  C+HSG V+EG   F+ MK
Sbjct: 540 VAIIYACSHSGSVEEGLACFDHMK 563



 Score =  221 bits (562), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 141/524 (26%), Positives = 271/524 (51%), Gaps = 11/524 (2%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +AL LY +M    +K    TF SV++ C+  G +  G  +   VL +GFG +LYIG+ LV
Sbjct: 16  KALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVLEIGFGFDLYIGNALV 75

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           D+Y R G  V+A ++F+E+  R++ +WN ++  +      DE L +Y +++  G++P+  
Sbjct: 76  DMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEALEIYYELRIAGLKPDNF 135

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  C   + + EG+ +H  V KLG +++++ ++N L+  Y   G L++A++ F+ 
Sbjct: 136 TLSSVLPACGGLLAVKEGEVIHGLVEKLG-MNIDVIMSNGLLSMYFKFGRLMDAQRVFNK 194

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           + V D +SWN+++  Y   +L  ++++L FR  + R RP + +    L       ++ FG
Sbjct: 195 MVVKDYVSWNTLICGYCQMELFEESIQL-FREMVKRFRPDLLTITSVLRACGLLRDLEFG 253

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           K +H Y+ + G +   V   + + D Y KC  + +S   F+    R     N+L+   + 
Sbjct: 254 KFVHDYILRSGIEF-DVTASNIVIDTYAKCGDLLASRKAFDRIKCRDSVSWNTLINGYIQ 312

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           S +  + V++F  M    +  D +T  T L   +  A   LG  + +HC   K GF+S++
Sbjct: 313 SRSYGEGVKLFKKM-KMDLKPDSITFVTLLSISTRLADTELG--KEIHCDLAKLGFDSDL 369

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            VS +L+D YS+CG+++ S +VFE +   ++V + +I+    +      A  M+  M   
Sbjct: 370 VVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWNTIIAACVQAEDCTLAFRMISQMRNE 429

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
            LIPD  T L +L  C+     ++G+ V ++    +G ++     + +I+M  +   L  
Sbjct: 430 ELIPDMGTLLGILPICSLIAAKRQGKEV-HACTFKFGFESTVPVGNALIEMYSKCSNLKY 488

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
              + +      D + W++L+ +  ++G    G++      E+E
Sbjct: 489 CIRVFEDMK-TKDVVTWTALVSAYGMYGE---GKKALRAFAEME 528



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 99/418 (23%), Positives = 211/418 (50%), Gaps = 8/418 (1%)

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN ++RA        + L +Y KMK   V+P+  +F  ++  C+     + G  + +HV+
Sbjct: 1   WNSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVL 60

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           ++G+   ++++ NALVD Y+  G L++A+  F+ +   D++SWNS++S Y+      +AL
Sbjct: 61  EIGF-GFDLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEAL 119

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           E+++ +++   +P   +    L        V  G+ IHG V KLG +   V + + L  M
Sbjct: 120 EIYYELRIAGLKPDNFTLSSVLPACGGLLAVKEGEVIHGLVEKLGMNI-DVIMSNGLLSM 178

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y K   +  +  VF     +     N+L+         ++++++F  MV      D +T+
Sbjct: 179 YFKFGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREMVKR-FRPDLLTI 237

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           ++ L+A  +      G  + +H   ++SG E ++  S  ++D Y++CG +  S + F++I
Sbjct: 238 TSVLRACGLLRDLEFG--KFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLASRKAFDRI 295

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              + V + +++NGY ++    E + + + M +  L PD +TF+ +L+        + G+
Sbjct: 296 KCRDSVSWNTLINGYIQSRSYGEGVKLFKKM-KMDLKPDSITFVTLLSISTRLADTELGK 354

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
            +   +  + G D+D    + ++DM  + G +  + ++ +      D + W++++ +C
Sbjct: 355 EIHCDLAKL-GFDSDLVVSNALVDMYSKCGNVKDSLKVFENMK-VRDIVTWNTIIAAC 410



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 91/329 (27%), Positives = 168/329 (51%), Gaps = 3/329 (0%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           +  P + TIT++   C  +  L     +  Y  +   + ++ +SN  ID + K G L ++
Sbjct: 229 RFRPDLLTITSVLRACGLLRDLEFGKFVHDYILRSGIEFDVTASNIVIDTYAKCGDLLAS 288

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +K FD +  RD V++N LI+G  + R   + + L+ +M    +K  + TF ++LS+ +  
Sbjct: 289 RKAFDRIKCRDSVSWNTLINGYIQSRSYGEGVKLFKKM-KMDLKPDSITFVTLLSISTRL 347

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                G +IHC +  LGF  +L + + LVD+Y + G    +L +F+ +  R++ TWN ++
Sbjct: 348 ADTELGKEIHCDLAKLGFDSDLVVSNALVDMYSKCGNVKDSLKVFENMKVRDIVTWNTII 407

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
            A  +        RM ++M+ E + P+  +   ++  CS+     +GK++H+   K G+ 
Sbjct: 408 AACVQAEDCTLAFRMISQMRNEELIPDMGTLLGILPICSLIAAKRQGKEVHACTFKFGF- 466

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           +  + V NAL++ YS C +L    + F+ +   DV++W ++VS Y  Y     AL  F  
Sbjct: 467 ESTVPVGNALIEMYSKCSNLKYCIRVFEDMKTKDVVTWTALVSAYGMYGEGKKALRAFAE 526

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           M+     P   +FV  +   S +G+V  G
Sbjct: 527 MEEAGIIPDHIAFVAIIYACSHSGSVEEG 555



 Score = 97.8 bits (242), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 84/379 (22%), Positives = 174/379 (45%), Gaps = 21/379 (5%)

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WNS++       L   AL+L+F+M+    +P   +F   +N  +  G+   G  +  +V 
Sbjct: 1   WNSVIRALTHNGLFSKALDLYFKMKDFNVKPDTYTFPSVINACAALGDFEIGNVVQNHVL 60

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           ++GF    +++ +AL DMY +   +  +  VFE    R +   NSL++    +G   +A+
Sbjct: 61  EIGFGF-DLYIGNALVDMYARFGDLVKARNVFEEMTHRDIVSWNSLISGYSANGYWDEAL 119

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           E++  +   G+  D  TLS+ L A     +   G   ++H    K G   ++ +S  L+ 
Sbjct: 120 EIYYELRIAGLKPDNFTLSSVLPACGGLLAVKEG--EVIHGLVEKLGMNIDVIMSNGLLS 177

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y + G +  + +VF K+   + V + +++ GY +  +  E++ +   M++R   PD +T
Sbjct: 178 MYFKFGRLMDAQRVFNKMVVKDYVSWNTLICGYCQMELFEESIQLFREMVKR-FRPDLLT 236

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
              VL  C     ++ G+ V + +    GI+ D    + +ID   + G L  + +   + 
Sbjct: 237 ITSVLRACGLLRDLEFGKFVHDYILRS-GIEFDVTASNIVIDTYAKCGDLLASRKAFDRI 295

Query: 581 PGGGDCMMWSSLLR---SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
               D + W++L+      R +G  +  +    + M+L+P      + +S          
Sbjct: 296 K-CRDSVSWNTLINGYIQSRSYGEGV--KLFKKMKMDLKPDSITFVTLLS---------- 342

Query: 638 VSMQIRETALARKLTRDIG 656
           +S ++ +T L +++  D+ 
Sbjct: 343 ISTRLADTELGKEIHCDLA 361


>gi|326504484|dbj|BAJ91074.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 823

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 188/632 (29%), Positives = 330/632 (52%), Gaps = 24/632 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           +N  +  + K GH+ +A+++FD M   RD+V++  +     +    ++AL L  EM+  G
Sbjct: 82  ANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCLTRNGAEQEALVLLGEMLESG 141

Query: 106 IKESASTFSSVLSVC-SNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVR 163
           ++ +A T  +    C     F + G  +    +  GF G ++ +G  L+D++ R G  V 
Sbjct: 142 LRPNAFTLCAAAHACFPGELFRSSGGTVLGFAIKTGFWGTDVSVGCALIDMFARNGDLVA 201

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F+ L ER +  W LM+  + +     + + ++  M  +G EP+G +   MV  C+ 
Sbjct: 202 ARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGMLEDGFEPDGYTMSSMVSACAE 261

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG---SLIEAKKSFDFIPVDDVIS 280
                 G+QLHS V++LG V  +  V+  LVD Y+      S+  A+K F  +P  +V+S
Sbjct: 262 QGSAGLGQQLHSLVLRLGLVS-DTCVSCGLVDMYTKLQMEQSMECARKVFKRMPTHNVMS 320

Query: 281 WNSIVSIYAD-YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           W +++S Y        +A+EL   M      P+  ++   L   +   +   G+QIH  V
Sbjct: 321 WTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYSSLLKACANLSDQDSGRQIHARV 380

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K    + +V V +AL  MY +   +E +   F+    R+L         L  S +I + 
Sbjct: 381 MKTSIGNVNV-VGNALVSMYAESGCMEEARKAFDQLYERNL---------LSTSSDIGET 430

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSC 456
                    +   +D V +ST   A  +SA+A +G     + LH  +IK+GFES+  +S 
Sbjct: 431 GRSNASWSSQIESMD-VGVSTFTFASLLSAAATVGLPTKGQQLHALSIKTGFESDKGISN 489

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
           SL+  YSRCG+++ + + F+++    NV+ +TSI++  +++G    AL +   MI  G+ 
Sbjct: 490 SLVSMYSRCGYLDDACRAFDEMEDDHNVISWTSIISALAKHGHAERALSLFHDMILSGVK 549

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P+ VT++ VL+ C+H G+VKEG+  F SM+  + +    +HY+CM+D+L R+G++ +A E
Sbjct: 550 PNDVTYIAVLSACSHVGLVKEGKEYFRSMQKDHRLIPRMEHYACMVDLLARSGLVQEALE 609

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            + + P   D ++W +LL +CR + N  IG   A  +++LEP D A Y  +SN Y+  G 
Sbjct: 610 FINEMPCKADALVWKTLLGACRTYENIEIGEIAARHVIDLEPQDPAPYVLLSNLYAHGGL 669

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           ++   +IR     R L+++ G S + V N+ H
Sbjct: 670 WDEVARIRSLMRHRNLSKETGLSWMHVGNTIH 701



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/362 (25%), Positives = 177/362 (48%), Gaps = 21/362 (5%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIY 288
           G+ LH  ++    +D +  VAN+L+  YS CG +  A++ FD +  + D++SW ++    
Sbjct: 62  GRALHRRLLGTEVLDADALVANSLLTMYSKCGHVRAARRVFDGMRGLRDLVSWTAMAFCL 121

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY--FGKQIHGYVTKLGFDH 346
                  +AL L   M     RP+  +     + A   G ++   G  + G+  K GF  
Sbjct: 122 TRNGAEQEALVLLGEMLESGLRPNAFTLCAAAH-ACFPGELFRSSGGTVLGFAIKTGFWG 180

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V  AL DM+ +   + ++  VF     R++     ++T  +  G    AVE+F  M
Sbjct: 181 TDVSVGCALIDMFARNGDLVAARKVFNGLVERTVVVWTLMITRYVQGGCAGKAVELFLGM 240

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC- 465
           +++G   D  T+S+ + A +   SA LG  + LH   ++ G  S+  VSC L+D Y++  
Sbjct: 241 LEDGFEPDGYTMSSMVSACAEQGSAGLG--QQLHSLVLRLGLVSDTCVSCGLVDMYTKLQ 298

Query: 466 --GHIELSHQVFEKIPSPNVVCFTSIMNGYSR-NGMGREALDMLEVMIQRGLIPDKVTFL 522
               +E + +VF+++P+ NV+ +T++++GY +  G    A+++L  M+   + P+ +T+ 
Sbjct: 299 MEQSMECARKVFKRMPTHNVMSWTALISGYVQCGGQENNAVELLCEMLNESIEPNHLTYS 358

Query: 523 CVLAGC-----NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            +L  C       SG     +++  S+ +V  +       + ++ M   +G +++A +  
Sbjct: 359 SLLKACANLSDQDSGRQIHARVMKTSIGNVNVVG------NALVSMYAESGCMEEARKAF 412

Query: 578 QQ 579
            Q
Sbjct: 413 DQ 414


>gi|357468777|ref|XP_003604673.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
 gi|355505728|gb|AES86870.1| hypothetical protein MTR_4g015760 [Medicago truncatula]
          Length = 838

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 188/674 (27%), Positives = 334/674 (49%), Gaps = 29/674 (4%)

Query: 6   LLPRVRTITTLAPTCTSIVPLS--------SSLLLDSYCQPNPQLNIYSSNRTIDDFVKS 57
           L+ R   +  L  TC S + +S        + L+ DS+     +LN+         + + 
Sbjct: 135 LMERRNLLVKLLETCCSKLSISQLHSQCLKAGLVHDSFIVT--KLNVL--------YARY 184

Query: 58  GHLNSAKKLFDEMPARDMVTYN-LLISGC--GKFRHPKQALYLYDEMVSHGIKESASTFS 114
             ++ A KLF E P R +  +N LL S C  G++          + + S  I+E    +S
Sbjct: 185 ASIHHAHKLFQETPHRTVYLWNALLRSYCFEGEWVETLSLFRQMNNVSSVSIEERPDNYS 244

Query: 115 SVLSVCSNAGFYTE--GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
             +++ S AG      G  IH  +  +    ++++GS L+DLY + G    A+ +F E P
Sbjct: 245 VSIALKSCAGLRKLLLGKVIHGFLKKVRIDGDMFVGSALIDLYTKCGQMNDAVKVFMEYP 304

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           + ++  W  ++  + +   P+  L  +++M  +E V P+ ++   +   C+       G+
Sbjct: 305 KPDVVLWTSIISGYEQSGSPELALAFFSRMVVSEKVSPDPVTLVSVASACAQLSNFKLGR 364

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            +H  V + G +D  + +AN+L+  Y   GS+  A   F  +   D+ISW+++V+ YAD 
Sbjct: 365 SVHGFVKRKG-LDNKLCLANSLLHLYGKTGSIKNASNLFREMSDKDIISWSTMVACYADN 423

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               D L+LF  M   R +P+  + V  L   +   N+  G +IH      GF+  +  V
Sbjct: 424 GAETDVLDLFNEMLDKRIKPNWVTVVSVLRACACISNLEEGMKIHELAVNYGFEMETT-V 482

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +AL DMY KC   E +V +F   P + +     L +    +G + +++ +F  M+  G 
Sbjct: 483 STALMDMYMKCFSPEKAVDLFNRMPKKDVIAWAVLFSGYADNGMVHESMWVFRNMLSSGT 542

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D + L   L  +S         C  LH   IK+GFE+N  +  SL++ Y++C  IE +
Sbjct: 543 RPDAIALVKILTTISELGILQQAVC--LHAFVIKNGFENNQFIGASLIEVYAKCSSIEDA 600

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIPDKVTFLCVLAGCNH 530
           ++VF+ +   +VV ++SI+  Y  +G G EAL +   M       P+ VTF+ +L+ C+H
Sbjct: 601 NKVFKGMTYKDVVTWSSIIAAYGFHGQGEEALKLFYQMANHSDTKPNNVTFISILSACSH 660

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG++KEG  +F+ M + Y +  + +HY+ M+D+LGR G LD A +++   P      +W 
Sbjct: 661 SGLIKEGINMFDIMVNKYKLKPNSEHYAIMVDLLGRMGELDMALDVINNMPMQAGPDIWG 720

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           +LL +CR+H N  +G   A  L  L+P     Y  +SN YS    +  + ++R     ++
Sbjct: 721 ALLGACRIHQNIKMGEVAAKNLFSLDPNHAGYYILLSNIYSVDENWHSATKLRRLVKEKR 780

Query: 651 LTRDIGHSLIEVNS 664
           L + +G S++E+ +
Sbjct: 781 LNKIVGQSVVELKN 794


>gi|147804706|emb|CAN64870.1| hypothetical protein VITISV_041329 [Vitis vinifera]
          Length = 629

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 167/507 (32%), Positives = 276/507 (54%), Gaps = 18/507 (3%)

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D   E N+  +N ++  F     P+E    Y KM+ EGV P+  +F      C+I   LD
Sbjct: 97  DPTHEINVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFP-----CAIKACLD 151

Query: 229 --EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
             E K++H  + K G +++++F+ +ALV+ Y   G +  A+ +F+ +P+ DV+ WN++V+
Sbjct: 152 VLEIKKIHGLLFKFG-LELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVN 210

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA        LE F RM      PS  +    L+  +  G++  G+ IHG+  K+G+D 
Sbjct: 211 GYAQIGQFEMVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDS 270

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
           G V V ++L DMYGKC  IE ++ +FE    + +   NS+++     G+    + +   M
Sbjct: 271 G-VAVSNSLIDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRM 329

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN------IAVSCSLMD 460
           +  GI  D VT++T L A S  A+   G  R +H   I SG   +      + +  +++D
Sbjct: 330 LGAGIQPDLVTVTTVLPACSHLAALMHG--REIHGYMIVSGLGKDGKDIDDVLLKNAVID 387

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG +  +H VFE++ + +V  +  ++ GY  +G G EAL+M   M +  L PD+VT
Sbjct: 388 MYAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVT 447

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ VL+ C+H+G V +G+     MKS Y +    +HY+C+IDMLGRAG LD+A EL    
Sbjct: 448 FVGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTM 507

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   + ++W +LL +CR+H + ++    A  + ELEP     Y  +SN Y  +G +E  +
Sbjct: 508 PIEANPVVWRALLAACRLHKHAVLAEVAAQRVFELEPEHCGSYVLMSNVYGAVGRYEEVL 567

Query: 641 QIRETALARKLTRDIGHSLIEV-NSCH 666
           ++R T   + + +  G S IE+ N  H
Sbjct: 568 EVRHTMRQQNVRKTPGCSWIELKNGVH 594



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 112/428 (26%), Positives = 206/428 (48%), Gaps = 21/428 (4%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           ++  +N +ISG      P++    Y +M + G+     TF   +  C +     E  +IH
Sbjct: 103 NVFAFNAIISGFITNGFPEEGFEFYQKMRNEGVMPDKFTFPCAIKACLDV---LEIKKIH 159

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
             +   G  L+++IGS LV+ Y++ G    A   F+ELP R++  WN M+  + ++ + +
Sbjct: 160 GLLFKFGLELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFE 219

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
            VL  + +M  E V P+  +    +   ++   L+ G+ +H   +K+G+ D  + V+N+L
Sbjct: 220 MVLETFRRMNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGY-DSGVAVSNSL 278

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY---ADYDLIFDALELFFRMQLCRKR 310
           +D Y  C  + +A + F+ +   D+ SWNSIVS++    D+D     L L  RM     +
Sbjct: 279 IDMYGKCKCIEDALEIFEMMREKDIFSWNSIVSVHEQCGDHD---GTLRLLDRMLGAGIQ 335

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVT-----KLGFDHGSVHVQSALTDMYGKCNVI 365
           P + +    L   S    +  G++IHGY+      K G D   V +++A+ DMY KC  +
Sbjct: 336 PDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDMYAKCGSM 395

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  VFE    + +   N ++      G   +A+EMF  M +  +  DEVT    L A 
Sbjct: 396 RDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSAC 455

Query: 426 SVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
           S +   + G   L+    +KS ++    I     ++D   R G ++ ++++   +P   N
Sbjct: 456 SHAGFVSQGRNFLVQ---MKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMPIEAN 512

Query: 483 VVCFTSIM 490
            V + +++
Sbjct: 513 PVVWRALL 520



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 76/299 (25%), Positives = 156/299 (52%), Gaps = 7/299 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++  +  ++ ++K G +  A+  F+E+P RD+V +N +++G  +    +  L  +  
Sbjct: 168 ELDVFIGSALVNCYLKFGLMEHAQVAFEELPIRDVVLWNAMVNGYAQIGQFEMVLETFRR 227

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +  S  T +  LSV +  G    G  IH   + +G+   + + + L+D+Y +   
Sbjct: 228 MNDESVVPSRFTVTGXLSVFAVMGDLNNGRIIHGFAMKMGYDSGVAVSNSLIDMYGKCKC 287

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL++F+ + E+++ +WN ++    +    D  LR+ ++M   G++P+ ++   ++  
Sbjct: 288 IEDALEIFEMMREKDIFSWNSIVSVHEQCGDHDGTLRLLDRMLGAGIQPDLVTVTTVLPA 347

Query: 221 CSIGMLLDEGKQLHSHVIKLGW------VDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
           CS    L  G+++H ++I  G       +D ++ + NA++D Y+ CGS+ +A   F+ + 
Sbjct: 348 CSHLAALMHGREIHGYMIVSGLGKDGKDID-DVLLKNAVIDMYAKCGSMRDAHLVFERMS 406

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
             DV SWN ++  Y  +    +ALE+F RM   + +P   +FV  L+  S  G V  G+
Sbjct: 407 NKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTFVGVLSACSHAGFVSQGR 465



 Score = 70.5 bits (171), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 52/200 (26%), Positives = 90/200 (45%), Gaps = 10/200 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-------QPNPQLNIYSSNRTIDD 53
           ML   + P + T+TT+ P C+ +  L     +  Y              ++   N  ID 
Sbjct: 329 MLGAGIQPDLVTVTTVLPACSHLAALMHGREIHGYMIVSGLGKDGKDIDDVLLKNAVIDM 388

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A  +F+ M  +D+ ++N++I G G   +  +AL ++  M    +K    TF
Sbjct: 389 YAKCGSMRDAHLVFERMSNKDVASWNIMIMGYGMHGYGNEALEMFSRMCEVQLKPDEVTF 448

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
             VLS CS+AGF ++G     ++ S       +   + ++D+  R G    A +L   +P
Sbjct: 449 VGVLSACSHAGFVSQGRNFLVQMKSKYDVAPTIEHYTCVIDMLGRAGQLDEAYELALTMP 508

Query: 173 -ERNLATWNLMLRAFCELSR 191
            E N   W  +L A C L +
Sbjct: 509 IEANPVVWRALLAA-CRLHK 527


>gi|356506811|ref|XP_003522169.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Glycine max]
          Length = 751

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 160/542 (29%), Positives = 290/542 (53%), Gaps = 6/542 (1%)

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            +G Q+H  ++  G   N ++ +  ++LY + G     + LFD++ +RN+ +W  ++  F
Sbjct: 92  NKGKQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIITGF 151

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
              SR  E L  + +M+ EG      +   +++ C+    +  G Q+H  V+K G+    
Sbjct: 152 AHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGF-GCE 210

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           +FV + L D YS CG L +A K+F+ +P  D + W S++  +        AL  + +M  
Sbjct: 211 LFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKMVT 270

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
                        L+  S      FGK +H  + KLGF++ +  + +ALTDMY K   + 
Sbjct: 271 DDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLGFEYETF-IGNALTDMYSKSGDMV 329

Query: 367 SSVAVFE-SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           S+  VF+  +   S+    +++   +    I+ A+  F  +   GI  +E T ++ +KA 
Sbjct: 330 SASNVFQIHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSLIKAC 389

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +  A    GS   LH   +K  F+ +  VS +L+D Y +CG  + S Q+F++I +P+ + 
Sbjct: 390 ANQAKLEHGS--QLHGQVVKFNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIENPDEIA 447

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + +++  +S++G+GR A++    MI RGL P+ VTF+ +L GC+H+GMV++G   F+SM+
Sbjct: 448 WNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFVNLLKGCSHAGMVEDGLNYFSSME 507

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
            +YG+    +HYSC+ID+LGRAG L +AE+ +   P   +   W S L +C++HG+    
Sbjct: 508 KIYGVVPKEEHYSCVIDLLGRAGKLKEAEDFINNMPFEPNVFGWCSFLGACKIHGDMERA 567

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NS 664
           +  A+ LM+LEP +   +  +SN Y++  ++E    +R+      + +  G+S +++ N 
Sbjct: 568 KFAADKLMKLEPENSGAHVLLSNIYAKEKQWEDVQSLRKMIKDGNMNKLPGYSWVDIRNK 627

Query: 665 CH 666
            H
Sbjct: 628 TH 629



 Score =  184 bits (467), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 138/499 (27%), Positives = 221/499 (44%), Gaps = 16/499 (3%)

Query: 7   LPRVRTITTLAPTCTSIVPLSS-----SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
           L   +T+  L  T      L+      ++L+   C PN  L    SN  ++ + K G L+
Sbjct: 72  LSDTKTVAHLIQTYARTKELNKGKQLHAMLIRGGCLPNTFL----SNHFLNLYSKCGELD 127

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
              KLFD+M  R+MV++  +I+G       ++AL  + +M   G   +    SSVL  C+
Sbjct: 128 YTIKLFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACT 187

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
           + G    G Q+HC V+  GFG  L++GS L D+Y + G    A   F+E+P ++   W  
Sbjct: 188 SLGAIQFGTQVHCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTS 247

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+  F +     + L  Y KM  + V  +    C  +  CS       GK LH+ ++KLG
Sbjct: 248 MIDGFVKNGDFKKALTAYMKMVTDDVFIDQHVLCSTLSACSALKASSFGKSLHATILKLG 307

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSIVSIYADYDLIFDALE 299
           + +   F+ NAL D YS  G ++ A   F  I  D   ++S  +I+  Y + D I  AL 
Sbjct: 308 F-EYETFIGNALTDMYSKSGDMVSASNVFQ-IHSDCISIVSLTAIIDGYVEMDQIEKALS 365

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F  ++     P+  +F   +   +    +  G Q+HG V K  F      V S L DMY
Sbjct: 366 TFVDLRRRGIEPNEFTFTSLIKACANQAKLEHGSQLHGQVVKFNFKRDPF-VSSTLVDMY 424

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           GKC + + S+ +F+          N+L+      G  ++A+E F  M+  G+  + VT  
Sbjct: 425 GKCGLFDHSIQLFDEIENPDEIAWNTLVGVFSQHGLGRNAIETFNGMIHRGLKPNAVTFV 484

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             LK  S +     G         I          SC ++D   R G ++ +      +P
Sbjct: 485 NLLKGCSHAGMVEDGLNYFSSMEKIYGVVPKEEHYSC-VIDLLGRAGKLKEAEDFINNMP 543

Query: 480 -SPNVVCFTSIMNGYSRNG 497
             PNV  + S +     +G
Sbjct: 544 FEPNVFGWCSFLGACKIHG 562



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 105/376 (27%), Positives = 189/376 (50%), Gaps = 9/376 (2%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L++GKQLH+ +I+ G +  N F++N  ++ YS CG L    K FD +   +++SW SI++
Sbjct: 91  LNKGKQLHAMLIRGGCLP-NTFLSNHFLNLYSKCGELDYTIKLFDKMSQRNMVSWTSIIT 149

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            +A      +AL  F +M++  +  +  +    L   +  G + FG Q+H  V K GF  
Sbjct: 150 GFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGAIQFGTQVHCLVVKCGFG- 208

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             + V S LTDMY KC  +  +   FE  P +      S++   + +G+ K A+  +  M
Sbjct: 209 CELFVGSNLTDMYSKCGELSDACKAFEEMPCKDAVLWTSMIDGFVKNGDFKKALTAYMKM 268

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           V + + +D+  L +TL A S   +++ G  + LH   +K GFE    +  +L D YS+ G
Sbjct: 269 VTDDVFIDQHVLCSTLSACSALKASSFG--KSLHATILKLGFEYETFIGNALTDMYSKSG 326

Query: 467 HIELSHQVFEKIPSP--NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            +  +  VF+ I S   ++V  T+I++GY       +AL     + +RG+ P++ TF  +
Sbjct: 327 DMVSASNVFQ-IHSDCISIVSLTAIIDGYVEMDQIEKALSTFVDLRRRGIEPNEFTFTSL 385

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           +  C +   ++ G  +   +   +    D    S ++DM G+ G+ D + +L  +     
Sbjct: 386 IKACANQAKLEHGSQLHGQVVK-FNFKRDPFVSSTLVDMYGKCGLFDHSIQLFDEIE-NP 443

Query: 585 DCMMWSSLLRSCRVHG 600
           D + W++L+     HG
Sbjct: 444 DEIAWNTLVGVFSQHG 459



 Score = 63.9 bits (154), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 46/180 (25%), Positives = 87/180 (48%), Gaps = 4/180 (2%)

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D  T++  ++  + +   N G  + LH   I+ G   N  +S   ++ YS+CG ++ + +
Sbjct: 74  DTKTVAHLIQTYARTKELNKG--KQLHAMLIRGGCLPNTFLSNHFLNLYSKCGELDYTIK 131

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           +F+K+   N+V +TSI+ G++ N   +EAL     M   G I  +     VL  C   G 
Sbjct: 132 LFDKMSQRNMVSWTSIITGFAHNSRFQEALSSFCQMRIEGEIATQFALSSVLQACTSLGA 191

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           ++ G  V + +    G   +    S + DM  + G L  A +  ++ P   D ++W+S++
Sbjct: 192 IQFGTQV-HCLVVKCGFGCELFVGSNLTDMYSKCGELSDACKAFEEMP-CKDAVLWTSMI 249


>gi|414881621|tpg|DAA58752.1| TPA: hypothetical protein ZEAMMB73_723286 [Zea mays]
          Length = 1058

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 176/631 (27%), Positives = 331/631 (52%), Gaps = 16/631 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  +  +  F + G  + AK +F  +  ++ VT N LI G  +    ++A+ ++    
Sbjct: 309 DLYVGSALVSAFARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVG-T 367

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQI----HCRVLSLGF-GLNLYIGSPLVDLYMR 157
            + +  +A T+  +LS  +      EG++I    H  +L  G   L + + + LV++Y +
Sbjct: 368 RNTVDVNADTYVVLLSALAEYSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAK 427

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +F  +   +  +WN ++ A  +    +E +  Y+ M+   + P+  +    
Sbjct: 428 CGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISS 487

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C+   LL  G+Q+H   +K G +D++  V+N LV  Y  CG++ +  K F+ +   D
Sbjct: 488 LSSCAGLKLLTAGQQVHCDAVKWG-LDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHD 546

Query: 278 VISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
            +SWN+++ + A     I + +++F  M      P+  +F+  L   S    +  GKQ+H
Sbjct: 547 EVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVH 606

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGN 395
             V K G    +V V +AL   Y K   + S   +F + +  R     NS+++  +++GN
Sbjct: 607 AAVMKHGVMEDNV-VDNALISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGN 665

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
           +++A++    M+  G  +D  T S  L A +  A+   G    LH   I+S  ES++ V 
Sbjct: 666 LQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERG--MELHAFGIRSHLESDVVVE 723

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +L+D YS+CG ++ + ++F  +   N   + S+++GY+R+G+GR+A+++ E M++    
Sbjct: 724 SALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKAIEIFEEMLRSRES 783

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD VTF+ VL+ C+H+G+V+ G   F  M   +GI    +HYSC+ID+LGRAG +DK +E
Sbjct: 784 PDHVTFVSVLSACSHAGLVERGLEYFEMMPD-HGILPQIEHYSCVIDLLGRAGKIDKIKE 842

Query: 576 LLQQTPGGGDCMMWSSLLRSCR--VHGNEI-IGRRVANILMELEPVDFAVYSQVSNFYSE 632
            +Q+ P   + ++W ++L +CR    G+ I +GR  + +L+E+EP +   Y   SNF++ 
Sbjct: 843 YIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGREASRVLLEIEPQNPVNYVLASNFHAA 902

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            G +E + + R         ++ G S + +N
Sbjct: 903 TGMWEDTAKARTAMRQATEKKEAGRSWVTLN 933



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 139/636 (21%), Positives = 289/636 (45%), Gaps = 33/636 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
           +++  N  ++ + K   L +A ++FDEMP R+ V++  L+SG       ++A  ++  M 
Sbjct: 95  DLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGIAEEAFRVFRAML 154

Query: 102 --VSHGIKESASTFSSVLSVCSNAGFYTEG--IQIHCRVLSLGFGLNLYIGSPLVDLY-- 155
             V  G + ++ TF ++L  C + G    G  +Q+H  V    +  N  + + L+ +Y  
Sbjct: 155 REVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYASNTTVCNALISMYGS 214

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG----VEPNG 211
             +GP + A  +FD  P R+L TWN ++  + +         ++  M+       + P  
Sbjct: 215 CTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKDMQRGDSRIQLRPTE 274

Query: 212 LSFCYMVR----GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            +F  ++           +LD   Q+   V+K G    +++V +ALV  ++  G   EAK
Sbjct: 275 HTFGSLITAASLSSGSSAVLD---QVLVWVLKSG-CSSDLYVGSALVSAFARHGLTDEAK 330

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVEFLN---- 321
             F  +   + ++ N ++      D   +A+++F      R    +   ++V  L+    
Sbjct: 331 DIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVG---TRNTVDVNADTYVVLLSALAE 387

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
           ++     +  G+ +HG++ + G     + V + L +MY KC  IES+  +F+        
Sbjct: 388 YSISEEGLRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRI 447

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             N+++++L  +GN ++AV  +  M    I      L ++L   S +    L + + +HC
Sbjct: 448 SWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLS--SCAGLKLLTAGQQVHC 505

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG-R 500
            A+K G + + +VS  L+  Y  CG +    +VF  +   + V + ++M   + +     
Sbjct: 506 DAVKWGLDLDTSVSNVLVKMYGECGAMSDYWKVFNSMAEHDEVSWNTMMGVMASSQTPIS 565

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
           E + +   M++ GLIP+KVTF+ +LA  +   +++ G+ V  ++   +G+  D    + +
Sbjct: 566 EIVKVFNNMMRGGLIPNKVTFINLLAALSPLSVLELGKQVHAAVMK-HGVMEDNVVDNAL 624

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL-EPVD 619
           I    ++G +   E L        D + W+S++     +GN         +++   + +D
Sbjct: 625 ISCYAKSGDMGSCEHLFTNMSDRRDAISWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMD 684

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
              +S + N  + +   E  M++    +   L  D+
Sbjct: 685 CCTFSIILNACASVAALERGMELHAFGIRSHLESDV 720



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 125/485 (25%), Positives = 223/485 (45%), Gaps = 35/485 (7%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L I  SN  ++ + K G + SA K+F  M A D +++N +IS   +  + ++A+  Y  M
Sbjct: 413 LKIAVSNGLVNMYAKCGAIESASKIFQLMEATDRISWNTIISALDQNGNCEEAVMHYSLM 472

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               I  S     S LS C+     T G Q+HC  +  G  L+  + + LV +Y   G  
Sbjct: 473 RQSCISPSNFALISSLSSCAGLKLLTAGQQVHCDAVKWGLDLDTSVSNVLVKMYGECGAM 532

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRP-DEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
                +F+ + E +  +WN M+        P  E+++++N M   G+ PN ++F  ++  
Sbjct: 533 SDYWKVFNSMAEHDEVSWNTMMGVMASSQTPISEIVKVFNNMMRGGLIPNKVTFINLLAA 592

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF-DFIPVDDVI 279
            S   +L+ GKQ+H+ V+K G ++ N+ V NAL+  Y+  G +   +  F +     D I
Sbjct: 593 LSPLSVLELGKQVHAAVMKHGVMEDNV-VDNALISCYAKSGDMGSCEHLFTNMSDRRDAI 651

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNS++S Y     + +A++  + M    +     +F   LN  +    +  G ++H + 
Sbjct: 652 SWNSMISGYIYNGNLQEAMDCVWLMIHSGQIMDCCTFSIILNACASVAALERGMELHAFG 711

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            +   +   V V+SAL DMY KC  ++ +  +F S   R+    NS+++     G  + A
Sbjct: 712 IRSHLE-SDVVVESALVDMYSKCGRVDYASKLFNSMTQRNEFSWNSMISGYARHGLGRKA 770

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE---------- 449
           +E+F  M+      D VT  + L A S             H   ++ G E          
Sbjct: 771 IEIFEEMLRSRESPDHVTFVSVLSACS-------------HAGLVERGLEYFEMMPDHGI 817

Query: 450 -SNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG--YSRNG----MGRE 501
              I     ++D   R G I+   +  +++P  PN + + +++     S++G    +GRE
Sbjct: 818 LPQIEHYSCVIDLLGRAGKIDKIKEYIQRMPIEPNALIWRTVLVACRQSKDGSNIDLGRE 877

Query: 502 ALDML 506
           A  +L
Sbjct: 878 ASRVL 882



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 117/456 (25%), Positives = 216/456 (47%), Gaps = 21/456 (4%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            +H  ++  G   +L++ + LV+ Y +      A  +FDE+PERN  +W  ++  +    
Sbjct: 82  NLHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHG 141

Query: 191 RPDEVLRMYNKMKAE---GVEPNGLSFCYMVRGCSIGM--LLDEGKQLHSHVIKLGWVDV 245
             +E  R++  M  E   G  P   +F  ++R C  G    L    Q+H  V K  +   
Sbjct: 142 IAEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAVQVHGLVSKTEYAS- 200

Query: 246 NIFVANALVDFYSAC--GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           N  V NAL+  Y +C  G  I A++ FD  P+ D+I+WN+++S+YA    +     LF  
Sbjct: 201 NTTVCNALISMYGSCTVGPPILAQRVFDGTPIRDLITWNALMSVYAKKGDVASTFTLFKD 260

Query: 304 MQ----LCRKRPSIRSFVEFLNFASRTGNVYFG-KQIHGYVTKLGFDHGSVHVQSALTDM 358
           MQ      + RP+  +F   +  AS +        Q+  +V K G     ++V SAL   
Sbjct: 261 MQRGDSRIQLRPTEHTFGSLITAASLSSGSSAVLDQVLVWVLKSGCS-SDLYVGSALVSA 319

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF-GFMVDEGIGLDE-V 416
           + +  + + +  +F S   ++    N L+  L+     ++AV++F G      +  D  V
Sbjct: 320 FARHGLTDEAKDIFLSLKQKNAVTLNGLIVGLVRQDFSEEAVKIFVGTRNTVDVNADTYV 379

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFES-NIAVSCSLMDAYSRCGHIELSHQVF 475
            L + L   S+S    L   R++H   +++G     IAVS  L++ Y++CG IE + ++F
Sbjct: 380 VLLSALAEYSISEEG-LRIGRVVHGHMLRTGLTDLKIAVSNGLVNMYAKCGAIESASKIF 438

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           + + + + + + +I++   +NG   EA+    +M Q  + P     +  L+ C    ++ 
Sbjct: 439 QLMEATDRISWNTIISALDQNGNCEEAVMHYSLMRQSCISPSNFALISSLSSCAGLKLLT 498

Query: 536 EGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
            GQ V  +++K  +G+D D    + ++ M G  G +
Sbjct: 499 AGQQVHCDAVK--WGLDLDTSVSNVLVKMYGECGAM 532



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 43/166 (25%), Positives = 78/166 (46%), Gaps = 17/166 (10%)

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           LH   IK G   ++ +   L+++Y++   +  + QVF+++P  N V +T +++GY  +G+
Sbjct: 83  LHVELIKRGLNHDLFLCNHLVNSYAKGARLAAASQVFDEMPERNAVSWTCLVSGYVLHGI 142

Query: 499 GREALDMLEVM---IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
             EA  +   M   +Q G  P   TF  +L  C   G  + G  V      V+G+ +  +
Sbjct: 143 AEEAFRVFRAMLREVQAGCRPTSFTFGTLLRACQDGGPDRLGFAV-----QVHGLVSKTE 197

Query: 556 HYS------CMIDMLGR--AGILDKAEELLQQTPGGGDCMMWSSLL 593
           + S       +I M G    G    A+ +   TP   D + W++L+
Sbjct: 198 YASNTTVCNALISMYGSCTVGPPILAQRVFDGTP-IRDLITWNALM 242


>gi|359482660|ref|XP_002285225.2| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Vitis vinifera]
          Length = 872

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 179/627 (28%), Positives = 324/627 (51%), Gaps = 16/627 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L +   N  +  FV+ G L  A  +F +M  RD+ ++N+L+ G  K  +  +AL LY  
Sbjct: 126 RLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHR 185

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  GI+    TF  VL  C        G ++H  V+  GF  ++ + + L+ +Y++ G 
Sbjct: 186 MLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFESDVDVVNALITMYVKCGD 245

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +P R+  +WN M+  + E     E LR++  M+   V+P+ ++   ++  
Sbjct: 246 IFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISA 305

Query: 221 CSIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           C    L DE  G+++H +VIK G+V   + V N+L+  +S+ G   EA+  F  +   D+
Sbjct: 306 CE--ALGDERLGREVHGYVIKTGFV-AEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDL 362

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW +++S Y    L   A+E +  M+     P   +    L+  +  G +  G  +H +
Sbjct: 363 VSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKGIMLHEF 422

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             + G     V V ++L DMY KC  I+ ++ VF   P +++    S++  L  +    +
Sbjct: 423 ADRTGLT-SYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFE 481

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG--SC-RLLHCCAIKSGFESNIAVS 455
           A+  F  M+   +  + VTL + L     SA A +G  SC + +H  A+++G   +  + 
Sbjct: 482 ALFFFQQMI-LSLKPNSVTLVSVL-----SACARIGALSCGKEIHAHALRTGLGFDGFLP 535

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +L+D Y RCG +E +   F      +V  +  ++ GY++ G G  A+++   MI+  + 
Sbjct: 536 NALLDMYVRCGRMEPAWNQFNSC-EKDVASWNILLTGYAQQGKGGLAVELFHKMIESDVN 594

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD++TF  +L  C+ SGMV +G   F SM+  + I  + +HY+ ++D+LGRAG L+ A E
Sbjct: 595 PDEITFTSLLCACSRSGMVTDGLEYFESMEHKFHIAPNLKHYASVVDLLGRAGRLEDAYE 654

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            +++ P   D  +W +LL +CR++ N  +G   A  + E++      Y  + N Y++ G+
Sbjct: 655 FIKKMPIDPDPAIWGALLNACRIYQNVELGELAAQHIFEMDTKSVGYYILLCNLYADSGK 714

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++   ++R+     +LT D G S +EV
Sbjct: 715 WDEVARVRKIMRENRLTVDPGCSWVEV 741



 Score =  218 bits (556), Expect = 7e-54,   Method: Compositional matrix adjust.
 Identities = 148/506 (29%), Positives = 261/506 (51%), Gaps = 16/506 (3%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++AL   D M    +     T+ ++L +C      +EG ++H  V      L + +G+ L
Sbjct: 76  EKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSKTVTRLGVRLGNAL 135

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           + +++R G  V A  +F ++ ER+L +WN+++  + +    DE L +Y++M   G+ P+ 
Sbjct: 136 LSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALNLYHRMLWVGIRPDV 195

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
            +F  ++R C     L  G+++H HVI+ G+ + ++ V NAL+  Y  CG +  A+  FD
Sbjct: 196 YTFPCVLRTCGGLPDLARGREVHLHVIRYGF-ESDVDVVNALITMYVKCGDIFSARLVFD 254

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +P  D ISWN+++S Y + D+  + L LFF M+     P + +    ++     G+   
Sbjct: 255 RMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMTSVISACEALGDERL 314

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+++HGYV K GF    V V ++L  M+      + +  VF     + L    ++++   
Sbjct: 315 GREVHGYVIKTGFV-AEVSVNNSLIQMHSSVGCWDEAEMVFSKMEFKDLVSWTAMISGYE 373

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGF 448
            +G  + AVE +  M  EG+  DE+T+++ L     SA A LG      +LH  A ++G 
Sbjct: 374 KNGLPEKAVETYTIMEHEGVVPDEITIASVL-----SACAGLGLLDKGIMLHEFADRTGL 428

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            S + V+ SL+D YS+C  I+ + +VF +IP+ NV+ +TSI+ G   N    EAL   + 
Sbjct: 429 TSYVIVANSLIDMYSKCRCIDKALEVFHRIPNKNVISWTSIILGLRLNYRSFEALFFFQQ 488

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRA 567
           MI   L P+ VT + VL+ C   G +  G+ +  +++++  G D      + ++DM  R 
Sbjct: 489 MIL-SLKPNSVTLVSVLSACARIGALSCGKEIHAHALRTGLGFDGFLP--NALLDMYVRC 545

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLL 593
           G ++ A    Q      D   W+ LL
Sbjct: 546 GRMEPAWN--QFNSCEKDVASWNILL 569



 Score =  157 bits (396), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 107/420 (25%), Positives = 209/420 (49%), Gaps = 6/420 (1%)

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++   C     ++ L   + M+   V     ++  ++R C       EG ++HS+V K
Sbjct: 63  NSLILELCLKGDLEKALIHLDSMQELQVSVEEETYIALLRLCEWKRAASEGSRVHSYVSK 122

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                + + + NAL+  +   G L+EA   F  +   D+ SWN +V  YA      +AL 
Sbjct: 123 TV-TRLGVRLGNALLSMFVRFGDLVEAWYVFGKMAERDLFSWNVLVGGYAKAGYFDEALN 181

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+ RM     RP + +F   L       ++  G+++H +V + GF+   V V +AL  MY
Sbjct: 182 LYHRMLWVGIRPDVYTFPCVLRTCGGLPDLARGREVHLHVIRYGFE-SDVDVVNALITMY 240

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  I S+  VF+  P R     N++++    +    + + +F  M +  +  D +T++
Sbjct: 241 VKCGDIFSARLVFDRMPRRDRISWNAMISGYFENDVCLEGLRLFFMMREFFVDPDLMTMT 300

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + + A        LG  R +H   IK+GF + ++V+ SL+  +S  G  + +  VF K+ 
Sbjct: 301 SVISACEALGDERLG--REVHGYVIKTGFVAEVSVNNSLIQMHSSVGCWDEAEMVFSKME 358

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             ++V +T++++GY +NG+  +A++   +M   G++PD++T   VL+ C   G++ +G +
Sbjct: 359 FKDLVSWTAMISGYEKNGLPEKAVETYTIMEHEGVVPDEITIASVLSACAGLGLLDKG-I 417

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           + +      G+ +     + +IDM  +   +DKA E+  + P   + + W+S++   R++
Sbjct: 418 MLHEFADRTGLTSYVIVANSLIDMYSKCRCIDKALEVFHRIP-NKNVISWTSIILGLRLN 476


>gi|125542314|gb|EAY88453.1| hypothetical protein OsI_09918 [Oryza sativa Indica Group]
          Length = 781

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 175/641 (27%), Positives = 324/641 (50%), Gaps = 7/641 (1%)

Query: 27  SSSLLLDSYCQPNPQLNIY--SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           S +L+  +  +P P+L     SS   +      G ++ A +    +   D   +N++I G
Sbjct: 22  SQNLIPATSKEPPPRLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRG 81

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
                 P  AL  Y  M+  G +    TF  V+  C+  G   EG   H  V+ LG   +
Sbjct: 82  FADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHD 141

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK- 203
           +Y  + LV  Y ++G    A  +FD +P R++ TWN+M+  +         L  + +M  
Sbjct: 142 VYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNIMVDGYVSNGLGSLALACFQEMHD 201

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
           A  V+ + +     +  C +     +GK++H +VI+ G ++ +I V  +L+D Y  CG +
Sbjct: 202 ALEVQHDSVGIIAALAACCLEFSSMQGKEIHGYVIRHG-LEQDIKVGTSLLDMYCKCGEV 260

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
             A+  F  +P+  V++WN ++  YA  +   +A + F +M+    +  + + +  L   
Sbjct: 261 AYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAAC 320

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           ++T +  +G+ +HGYV +  F    V +++AL +MYGK   +ESS  +F     ++L   
Sbjct: 321 AQTESSLYGRSVHGYVVRRQF-LPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSW 379

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N+++ + ++     +A+ +F  ++++ +  D  T+ST + A  +  S  L  CR +H   
Sbjct: 380 NNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGS--LRHCRQIHSYI 437

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           I  G+  N  +  +++  Y+R G +  S ++F+K+ S +V+ + +++ GY+ +G G+ AL
Sbjct: 438 IGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTAL 497

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
           +M + M   GL P++ TF+ VL  C+ SG+V EG + FN M   YG+    +HY CM D+
Sbjct: 498 EMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDL 557

Query: 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623
           LGR G L +  + ++  P      +W SLL + R   +  I    A  + +LE  +   Y
Sbjct: 558 LGREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCY 617

Query: 624 SQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             +S+ Y++ G +E   ++R     + L R    SL+E++S
Sbjct: 618 IVLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHS 658


>gi|6729034|gb|AAF27030.1|AC009177_20 hypothetical protein [Arabidopsis thaliana]
          Length = 548

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/500 (29%), Positives = 278/500 (55%), Gaps = 14/500 (2%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F+ +   ++  WN M+R +     PD+ L  Y +M  +G  P+  +F Y+++ CS 
Sbjct: 60  ARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSG 119

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +  G  +H  V+K G+ +VN++V+  L+  Y  CG +    + F+ IP  +V++W S
Sbjct: 120 LRDIQFGSCVHGFVVKTGF-EVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGS 178

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S + + +   DA+E F  MQ    + +    V+ L    R  + YF        +K+G
Sbjct: 179 LISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVACGRCFDPYFQ-------SKVG 231

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           F+   V + ++L DMY KC  + ++  +F+  P R+L   NS++T    +G+ ++A+ MF
Sbjct: 232 FN---VILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMF 288

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M+D GI  D+VT  + ++A  +   + LG    +H    K+GF  + A+ C+L++ Y+
Sbjct: 289 LDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQS--IHAYVSKTGFVKDAAIVCALVNMYA 346

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIPDKVTFL 522
           + G  E + + FE +   + + +T ++ G + +G G EAL + + M ++G   PD +T+L
Sbjct: 347 KTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYL 406

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL  C+H G+V+EGQ  F  M+ ++G++   +HY CM+D+L RAG  ++AE L++  P 
Sbjct: 407 GVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPV 466

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             +  +W +LL  C +H N  +  R+ +++ E E +   +Y  +SN Y++ G +     I
Sbjct: 467 KPNVNIWGALLNGCDIHENLELTDRIRSMVAEPEELGSGIYVLLSNIYAKAGRWADVKLI 526

Query: 643 RETALARKLTRDIGHSLIEV 662
           RE+  ++++ + +GHS +E 
Sbjct: 527 RESMKSKRVDKVLGHSSVET 546



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 202/441 (45%), Gaps = 24/441 (5%)

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           +L+ A+ +F+ +    +  +N +I G     +P +AL  Y EM+  G      TF  VL 
Sbjct: 56  NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLK 115

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            CS       G  +H  V+  GF +N+Y+ + L+ +YM  G     L +F+++P+ N+  
Sbjct: 116 ACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVA 175

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  ++  F   +R  + +  + +M++ GV+ N      ++  C  G   D   Q      
Sbjct: 176 WGSLISGFVNNNRFSDAIEAFREMQSNGVKANETIMVDLLVAC--GRCFDPYFQ-----S 228

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K+G+   N+ +A +L+D Y+ CG L  A+  FD +P   ++SWNSI++ Y+      +AL
Sbjct: 229 KVGF---NVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEAL 285

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            +F  M      P   +F+  +  +   G    G+ IH YV+K GF   +  V  AL +M
Sbjct: 286 CMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIV-CALVNM 344

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL-DEVT 417
           Y K    ES+   FE    +       ++  L   G+  +A+ +F  M ++G    D +T
Sbjct: 345 YAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGIT 404

Query: 418 LSTTLKA-----LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
               L A     L           R LH      G E  +     ++D  SR G  E + 
Sbjct: 405 YLGVLYACSHIGLVEEGQRYFAEMRDLH------GLEPTVEHYGCMVDILSRAGRFEEAE 458

Query: 473 QVFEKIP-SPNVVCFTSIMNG 492
           ++ + +P  PNV  + +++NG
Sbjct: 459 RLVKTMPVKPNVNIWGALLNG 479



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 158/339 (46%), Gaps = 15/339 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++N+Y S   +  ++  G +N   ++F+++P  ++V +  LISG         A+  + E
Sbjct: 139 EVNMYVSTCLLHMYMCCGEVNYGLRVFEDIPQWNVVAWGSLISGFVNNNRFSDAIEAFRE 198

Query: 101 MVSHGIKESASTFSSVLSVCSNA--GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           M S+G+K + +    +L  C      ++   +           G N+ + + L+D+Y + 
Sbjct: 199 MQSNGVKANETIMVDLLVACGRCFDPYFQSKV-----------GFNVILATSLIDMYAKC 247

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  LFD +PER L +WN ++  + +    +E L M+  M   G+ P+ ++F  ++
Sbjct: 248 GDLRTARYLFDGMPERTLVSWNSIITGYSQNGDAEEALCMFLDMLDLGIAPDKVTFLSVI 307

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           R   I      G+ +H++V K G+V  +  +  ALV+ Y+  G    AKK+F+ +   D 
Sbjct: 308 RASMIQGCSQLGQSIHAYVSKTGFVK-DAAIVCALVNMYAKTGDAESAKKAFEDLEKKDT 366

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQ-LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           I+W  ++   A +    +AL +F RMQ      P   +++  L   S  G V  G++   
Sbjct: 367 IAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPDGITYLGVLYACSHIGLVEEGQRYFA 426

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            +  L     +V     + D+  +    E +  + ++ P
Sbjct: 427 EMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMP 465



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 67/257 (26%), Positives = 128/257 (49%), Gaps = 2/257 (0%)

Query: 32  LDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP 91
            D Y Q     N+  +   ID + K G L +A+ LFD MP R +V++N +I+G  +    
Sbjct: 222 FDPYFQSKVGFNVILATSLIDMYAKCGDLRTARYLFDGMPERTLVSWNSIITGYSQNGDA 281

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++AL ++ +M+  GI     TF SV+      G    G  IH  V   GF  +  I   L
Sbjct: 282 EEALCMFLDMLDLGIAPDKVTFLSVIRASMIQGCSQLGQSIHAYVSKTGFVKDAAIVCAL 341

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPN 210
           V++Y + G +  A   F++L +++   W +++         +E L ++ +M+ +G   P+
Sbjct: 342 VNMYAKTGDAESAKKAFEDLEKKDTIAWTVVIIGLASHGHGNEALSIFQRMQEKGNATPD 401

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
           G+++  ++  CS   L++EG++  + +  L  ++  +     +VD  S  G   EA++  
Sbjct: 402 GITYLGVLYACSHIGLVEEGQRYFAEMRDLHGLEPTVEHYGCMVDILSRAGRFEEAERLV 461

Query: 271 DFIPVD-DVISWNSIVS 286
             +PV  +V  W ++++
Sbjct: 462 KTMPVKPNVNIWGALLN 478


>gi|125544467|gb|EAY90606.1| hypothetical protein OsI_12205 [Oryza sativa Indica Group]
          Length = 818

 Score =  273 bits (697), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 175/618 (28%), Positives = 312/618 (50%), Gaps = 33/618 (5%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++ +N  ++ + K G L SA++LFD MP R+MV++  L+    +    + A  L+  
Sbjct: 93  RLDLFCANVLLNMYGKLGPLASARRLFDRMPERNMVSFVTLVQAHAQRGDFEAAAALFRR 152

Query: 101 MV--SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           +    H + +   T    L++  +A     G+  H     LG   N ++GS L+D Y   
Sbjct: 153 LRWEGHEVNQFVLTTMLKLAIAMDAAGLAGGV--HSCAWKLGHDHNAFVGSGLIDAYSLC 210

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                A  +F+ +  ++   W  M+  + E   P+   R                     
Sbjct: 211 SLVSDAEHVFNGIVRKDAVVWTAMVSCYSENDCPENAFRC-------------------A 251

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           + CS+  +    + +H   IK    D    V  AL+D Y+ CG + +A+ +F+ IP DDV
Sbjct: 252 QSCSLLAISCARQGIHGCAIKT-LNDTEPHVGGALLDMYAKCGDIKDARLAFEMIPYDDV 310

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           I  + ++S YA  +    A ELF R+      P+  S    L   +    + FGKQIH +
Sbjct: 311 ILLSFMISRYAQSNQNEQAFELFLRLMRSSVLPNEYSLSSVLQACTNMVQLDFGKQIHNH 370

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K+G +   + V +AL D Y KCN ++SS+ +F S    +    N+++     SG  ++
Sbjct: 371 AIKIGHE-SDLFVGNALMDFYAKCNDMDSSLKIFSSLRDANEVSWNTIVVGFSQSGLGEE 429

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M    +   +VT S+ L+A + +AS  +     +HC   KS F ++  +  SL
Sbjct: 430 ALSVFCEMQAAQMPCTQVTYSSVLRACASTAS--IRHAGQIHCSIEKSTFNNDTVIGNSL 487

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++CG+I  + +VF+ +   +++ + +I++GY+ +G   +AL++ + M +  +  + 
Sbjct: 488 IDTYAKCGYIRDALKVFQHLMERDIISWNAIISGYALHGQAADALELFDRMNKSNVESND 547

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TF+ +L+ C  +G+V  G  +F+SM+  +GI    +HY+C++ +LGRAG L+ A + + 
Sbjct: 548 ITFVALLSVCCSTGLVNHGLSLFDSMRIDHGIKPSMEHYTCIVRLLGRAGRLNDALQFIG 607

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P     M+W +LL SC +H N  +GR  A  ++E+EP D   Y  +SN Y+  G  + 
Sbjct: 608 DIPSAPSAMVWRALLSSCIIHKNVALGRFSAEKILEIEPQDETTYVLLSNMYAAAGSLD- 666

Query: 639 SMQIRETALARKLTRDIG 656
                + AL RK  R+IG
Sbjct: 667 -----QVALLRKSMRNIG 679


>gi|297598430|ref|NP_001045574.2| Os01g0977400 [Oryza sativa Japonica Group]
 gi|255674132|dbj|BAF07488.2| Os01g0977400, partial [Oryza sativa Japonica Group]
          Length = 687

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 161/577 (27%), Positives = 291/577 (50%), Gaps = 19/577 (3%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+ H +  +  TF   L  CS    +  G  IH   +  G   +L++ + L+D+Y++   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR--MYNKMKAEGVEPNGLSFCYMV 218
              A  +F  +P R+L  WN ML  +         +   +  +M+   + PN  +   ++
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 219 RGCSIGMLLDEGKQLHSHVIKL---------GWVDVNIFVANALVDFYSACGSLIEAKKS 269
              +    L +G  +H++ I+            +   + +  AL+D Y+ CGSL+ A++ 
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM---QLCRKRPSIRSFVEFLNFASRT 326
           FD +P  + ++W++++  +     +  A  LF  M    LC   P+  S    L   +  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASL 238

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
            ++  G+Q+H  + K G  H  +   ++L  MY K  +I+ ++A+F+    +     ++L
Sbjct: 239 DHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 297

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           ++  + +G  ++A  +F  M    +  D  T+ + + A S  A+   G C   H   I  
Sbjct: 298 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS--HGSVIIR 355

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G  S  ++  +L+D Y++CG I+LS QVF  +PS ++V + +++ GY  +G+G+EA  + 
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 415

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M   G  PD VTF+C+L+ C+HSG+V EG+  F+ M   YG+    +HY CM+D+L R
Sbjct: 416 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 475

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
            G LD+A E +Q  P   D  +W +LL +CRV+ N  +G++V+ ++ EL P     +  +
Sbjct: 476 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 535

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           SN YS  G F+ + ++R     +   +  G S IE+N
Sbjct: 536 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 221/492 (44%), Gaps = 24/492 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK--FRHPKQALYLY 98
           Q +++ S   +D +VK   L  A  +F  MPARD+V +N +++G       H   A  L 
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 101

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN----------LYIG 148
            +M  H ++ +AST  ++L + +  G   +G  +H   +      N          + +G
Sbjct: 102 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 161

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-- 206
           + L+D+Y + G  + A  +FD +P RN  TW+ ++  F   SR  +   ++  M A+G  
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 207 -VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            + P   S    +R C+    L  G+QLH+ + K G V  ++   N+L+  Y+  G + +
Sbjct: 222 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQ 278

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A   FD + V D +S++++VS Y       +A  +F +MQ C   P   + V  +   S 
Sbjct: 279 AIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 338

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  G+  HG V   G       + +AL DMY KC  I+ S  VF   P R +   N+
Sbjct: 339 LAALQHGRCSHGSVIIRGLA-SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 397

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++      G  K+A  +F  M + G   D VT    L A S S     G     H     
Sbjct: 398 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK-HWFHVMGHG 456

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGRE 501
            G    +     ++D  SR G ++ +++  + +P   +V  + +++     Y    +G++
Sbjct: 457 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 516

Query: 502 ALDMLEVMIQRG 513
              M++ +   G
Sbjct: 517 VSRMIQELGPEG 528



 Score =  145 bits (366), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 181/392 (46%), Gaps = 23/392 (5%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-----QPNPQLN------IYSSNRTIDD 53
           +L P   T+  L P       L+    + +YC      PN          +      +D 
Sbjct: 108 RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDM 167

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI-KESAST 112
           + K G L  A+++FD MPAR+ VT++ LI G        QA  L+  M++ G+   S ++
Sbjct: 168 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 227

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            +S L  C++      G Q+H  +   G   +L  G+ L+ +Y + G   +A+ LFDE+ 
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA 287

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            ++  +++ ++  + +  R +E   ++ KM+A  VEP+  +   ++  CS    L  G+ 
Sbjct: 288 VKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRC 347

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            H  VI  G       + NAL+D Y+ CG +  +++ F+ +P  D++SWN++++ Y  + 
Sbjct: 348 SHGSVIIRGLAS-ETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI-----HGYVTKLGFDHG 347
           L  +A  LF  M      P   +F+  L+  S +G V  GK       HGY      +H 
Sbjct: 407 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH- 465

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
                  + D+  +   ++ +    +S P R+
Sbjct: 466 ----YICMVDLLSRGGFLDEAYEFIQSMPLRA 493


>gi|147789959|emb|CAN73858.1| hypothetical protein VITISV_024322 [Vitis vinifera]
          Length = 1539

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 180/629 (28%), Positives = 325/629 (51%), Gaps = 17/629 (2%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++Y  +  +  F + G  + AK +F++M  R++V+ N L+ G  K +  + A  ++ EM 
Sbjct: 789  DLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQGEAAAKVFHEM- 847

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFGLN-LYIGSPLVDLYMR 157
               +  ++ ++  +LS  S      EG     ++H  V+  G   N + IG+ LV++Y +
Sbjct: 848  KDLVGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKVAIGNGLVNMYAK 907

Query: 158  MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
             G    A  +F+ + E++  +WN ++    +    ++    + +M+  G  P+  +    
Sbjct: 908  SGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRTGSMPSNFTLIST 967

Query: 218  VRGC-SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
            +  C S+G ++  G+Q+H   +KLG +D ++ V+NAL+  Y+  G   E  K F  +P  
Sbjct: 968  LSSCASLGWIM-LGEQIHCDGLKLG-LDTDVSVSNALLALYAETGCFTECLKVFSLMPEY 1025

Query: 277  DVISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +SWNS++   +D +  +  A++ F  M       S  +F+  L+  S         QI
Sbjct: 1026 DQVSWNSVIGALSDSEASVSQAVKYFLEMMRGGWGLSRVTFINILSAVSSLSLHEVSHQI 1085

Query: 336  HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSG 394
            H  V K      +  + +AL   YGKC  +     +F   +  R     NS+++  +H+ 
Sbjct: 1086 HALVLKYCLSDDTA-IGNALLSCYGKCGEMNECEKIFARMSETRDEVSWNSMISGYIHNE 1144

Query: 395  NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             +  A+++  FM+ +G  LD  T +T L A +  A+   G    +H C I++  ES++ V
Sbjct: 1145 LLHKAMDLVWFMMQKGQRLDSFTFATVLSACASVATLERG--MEVHACGIRACMESDVVV 1202

Query: 455  SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
              +L+D YS+CG I+ + + FE +P  NV  + S+++GY+R+G G +AL +   M+  G 
Sbjct: 1203 GSALVDMYSKCGRIDYASRFFELMPLRNVYSWNSMISGYARHGHGEKALKLFTRMMLDGQ 1262

Query: 515  IPDKVT-FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
             PD V   L VL+ C+H G V+EG   F SM  VY +    +H+SCM+D+LGRAG LD+ 
Sbjct: 1263 PPDHVAPLLGVLSACSHVGFVEEGFEHFKSMSEVYRLSPRVEHFSCMVDLLGRAGKLDEV 1322

Query: 574  EELLQQTPGGGDCMMWSSLLRS-CRVHG-NEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
             + +   P   + ++W ++L + CR +G N  +GRR A +L+ELEP +   Y  ++N Y+
Sbjct: 1323 GDFINSMPMKPNVLIWRTVLGACCRANGRNTELGRRAAEMLLELEPQNAVNYVLLANMYA 1382

Query: 632  EIGEFEVSMQIRETALARKLTRDIGHSLI 660
               ++E   + R       + ++ G S +
Sbjct: 1383 SGEKWEDVAKARXAMKEAAVKKEAGCSWV 1411



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 149/575 (25%), Positives = 282/575 (49%), Gaps = 25/575 (4%)

Query: 61   NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI----KESASTFSSV 116
            N A+ +FD +  R+ +++N +IS   +      A  L+  M   G+    K +  TF S+
Sbjct: 700  NDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSL 759

Query: 117  LSV-CSNAGFYTEGI----QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
            ++  CS+  F   G+    Q+  RV   GF  +LY+GS LV  + R G +  A ++F+++
Sbjct: 760  ITAACSSVDF---GLCVLEQMLARVEKSGFLQDLYVGSALVSGFARFGLTDDAKNIFEQM 816

Query: 172  PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
              RN+ + N ++    +  + +   +++++MK + V  N  S+  ++   S   +L+EG+
Sbjct: 817  GVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMK-DLVGINSDSYVVLLSAFSEFSVLEEGR 875

Query: 232  ----QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
                ++H+HVI+ G  D  + + N LV+ Y+  G++ +A   F+ +   D +SWNS++S 
Sbjct: 876  RKGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISG 935

Query: 288  YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
                +   DA E F RM+     PS  + +  L+  +  G +  G+QIH    KLG D  
Sbjct: 936  LDQNECSEDAAESFLRMRRTGSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLKLGLD-T 994

Query: 348  SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS-GNIKDAVEMFGFM 406
             V V +AL  +Y +       + VF   P       NS++ +L  S  ++  AV+ F  M
Sbjct: 995  DVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYFLEM 1054

Query: 407  VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            +  G GL  VT    L A+S  +   +     +H   +K     + A+  +L+  Y +CG
Sbjct: 1055 MRGGWGLSRVTFINILSAVSSLSLHEVS--HQIHALVLKYCLSDDTAIGNALLSCYGKCG 1112

Query: 467  HIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
             +    ++F ++  + + V + S+++GY  N +  +A+D++  M+Q+G   D  TF  VL
Sbjct: 1113 EMNECEKIFARMSETRDEVSWNSMISGYIHNELLHKAMDLVWFMMQKGQRLDSFTFATVL 1172

Query: 526  AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
            + C     ++ G  V ++      +++D    S ++DM  + G +D A    +  P   +
Sbjct: 1173 SACASVATLERGMEV-HACGIRACMESDVVVGSALVDMYSKCGRIDYASRFFELMP-LRN 1230

Query: 586  CMMWSSLLRSCRVHGN-EIIGRRVANILMELEPVD 619
               W+S++     HG+ E   +    ++++ +P D
Sbjct: 1231 VYSWNSMISGYARHGHGEKALKLFTRMMLDGQPPD 1265



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 154/643 (23%), Positives = 305/643 (47%), Gaps = 30/643 (4%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            N++ SN  I+ +V+ G L SA+KLFDEM  R++VT+  LISG  +   P +A   + +MV
Sbjct: 578  NLFLSNTLINIYVRIGDLGSAQKLFDEMSNRNLVTWACLISGYTQNGKPDEACARFRDMV 637

Query: 103  SHGIKESASTFSSVLSVCSNAGFY--TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR-MG 159
              G   +   F S L  C  +G      G+QIH  +    +G ++ + + L+ +Y   + 
Sbjct: 638  RAGFIPNHYAFGSALRACQESGPSGCKLGVQIHGLISKTRYGSDVVVCNVLISMYGSCLD 697

Query: 160  PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV----EPNGLSFC 215
             +  A  +FD +  RN  +WN ++  +           +++ M+ EG+    +PN  +F 
Sbjct: 698  SANDARSVFDRIGIRNSISWNSIISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFG 757

Query: 216  YMVRGC--SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
             ++     S+   L   +Q+ + V K G++  +++V +ALV  ++  G   +AK  F+ +
Sbjct: 758  SLITAACSSVDFGLCVLEQMLARVEKSGFLQ-DLYVGSALVSGFARFGLTDDAKNIFEQM 816

Query: 274  PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV---EFLNFASRTGNVY 330
             V +V+S N ++           A ++F  M+      S    V    F  F+       
Sbjct: 817  GVRNVVSMNGLMVGLVKQKQGEAAAKVFHEMKDLVGINSDSYVVLLSAFSEFSVLEEGRR 876

Query: 331  FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
             G+++H +V + G +   V + + L +MY K   I  + +VFE    +     NSL++ L
Sbjct: 877  KGREVHAHVIRTGLNDNKVAIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGL 936

Query: 391  LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSG 447
              +   +DA E F  M   G      TL +TL     S+ A+LG   L   +HC  +K G
Sbjct: 937  DQNECSEDAAESFLRMRRTGSMPSNFTLISTL-----SSCASLGWIMLGEQIHCDGLKLG 991

Query: 448  FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG-REALDML 506
             +++++VS +L+  Y+  G      +VF  +P  + V + S++   S +     +A+   
Sbjct: 992  LDTDVSVSNALLALYAETGCFTECLKVFSLMPEYDQVSWNSVIGALSDSEASVSQAVKYF 1051

Query: 507  EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
              M++ G    +VTF+ +L+  + S  + E     +++   Y +  D    + ++   G+
Sbjct: 1052 LEMMRGGWGLSRVTFINILSAVS-SLSLHEVSHQIHALVLKYCLSDDTAIGNALLSCYGK 1110

Query: 567  AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR---VANILMELEPVDFAVY 623
             G +++ E++  +     D + W+S++ S  +H NE++ +    V  ++ + + +D   +
Sbjct: 1111 CGEMNECEKIFARMSETRDEVSWNSMI-SGYIH-NELLHKAMDLVWFMMQKGQRLDSFTF 1168

Query: 624  SQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEVNS 664
            + V +  + +   E  M++    +   +  D  +G +L+++ S
Sbjct: 1169 ATVLSACASVATLERGMEVHACGIRACMESDVVVGSALVDMYS 1211



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 129/502 (25%), Positives = 236/502 (47%), Gaps = 27/502 (5%)

Query: 109  SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
            S+ TF S+++    +    E  ++H + +  GF  NL++ + L+++Y+R+G    A  LF
Sbjct: 543  SSETFESLINRYQGSCCSEEARELHLQSIKYGFVGNLFLSNTLINIYVRIGDLGSAQKLF 602

Query: 169  DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS----IG 224
            DE+  RNL TW  ++  + +  +PDE    +  M   G  PN  +F   +R C      G
Sbjct: 603  DEMSNRNLVTWACLISGYTQNGKPDEACARFRDMVRAGFIPNHYAFGSALRACQESGPSG 662

Query: 225  MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNS 283
              L  G Q+H  + K  +   ++ V N L+  Y +C  S  +A+  FD I + + ISWNS
Sbjct: 663  CKL--GVQIHGLISKTRY-GSDVVVCNVLISMYGSCLDSANDARSVFDRIGIRNSISWNS 719

Query: 284  IVSIYADYDLIFDALELFFRMQL----CRKRPSIRSFVEFLNFASRTGNVYFG----KQI 335
            I+S+Y+       A +LF  MQ        +P+  +F   +  A  +  V FG    +Q+
Sbjct: 720  IISVYSRRGDXVSAYDLFSSMQKEGLGFSFKPNEYTFGSLITAACSS--VDFGLCVLEQM 777

Query: 336  HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
               V K GF    ++V SAL   + +  + + +  +FE    R++   N LM  L+    
Sbjct: 778  LARVEKSGFLQ-DLYVGSALVSGFARFGLTDDAKNIFEQMGVRNVVSMNGLMVGLVKQKQ 836

Query: 396  IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG--SCRLLHCCAIKSGFESN-I 452
             + A ++F  M D  +G++  +    L A S  +    G    R +H   I++G   N +
Sbjct: 837  GEAAAKVFHEMKDL-VGINSDSYVVLLSAFSEFSVLEEGRRKGREVHAHVIRTGLNDNKV 895

Query: 453  AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            A+   L++ Y++ G I  +  VFE +   + V + S+++G  +N    +A +    M + 
Sbjct: 896  AIGNGLVNMYAKSGAIADACSVFELMVEKDSVSWNSLISGLDQNECSEDAAESFLRMRRT 955

Query: 513  GLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G +P   T +  L+ C   G +  G+ +  + +K   G+D D    + ++ +    G   
Sbjct: 956  GSMPSNFTLISTLSSCASLGWIMLGEQIHCDGLK--LGLDTDVSVSNALLALYAETGCFT 1013

Query: 572  KAEELLQQTPGGGDCMMWSSLL 593
            +  ++    P   D + W+S++
Sbjct: 1014 ECLKVFSLMP-EYDQVSWNSVI 1034


>gi|57899529|dbj|BAD87043.1| vegetative storage protein-like [Oryza sativa Japonica Group]
          Length = 698

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 161/577 (27%), Positives = 291/577 (50%), Gaps = 19/577 (3%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+ H +  +  TF   L  CS    +  G  IH   +  G   +L++ + L+D+Y++   
Sbjct: 1   MLRHRVAPNNYTFPFALKACSALADHHCGRAIHRHAIHAGLQADLFVSTALLDMYVKCAC 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR--MYNKMKAEGVEPNGLSFCYMV 218
              A  +F  +P R+L  WN ML  +         +   +  +M+   + PN  +   ++
Sbjct: 61  LPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLSMQMQMHRLRPNASTLVALL 120

Query: 219 RGCSIGMLLDEGKQLHSHVIKL---------GWVDVNIFVANALVDFYSACGSLIEAKKS 269
              +    L +G  +H++ I+            +   + +  AL+D Y+ CGSL+ A++ 
Sbjct: 121 PLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDMYAKCGSLLYARRV 180

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM---QLCRKRPSIRSFVEFLNFASRT 326
           FD +P  + ++W++++  +     +  A  LF  M    LC   P+  S    L   +  
Sbjct: 181 FDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPT--SIASALRACASL 238

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
            ++  G+Q+H  + K G  H  +   ++L  MY K  +I+ ++A+F+    +     ++L
Sbjct: 239 DHLRMGEQLHALLAKSGV-HADLTAGNSLLSMYAKAGLIDQAIALFDEMAVKDTVSYSAL 297

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           ++  + +G  ++A  +F  M    +  D  T+ + + A S  A+   G C   H   I  
Sbjct: 298 VSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRCS--HGSVIIR 355

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G  S  ++  +L+D Y++CG I+LS QVF  +PS ++V + +++ GY  +G+G+EA  + 
Sbjct: 356 GLASETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHGLGKEATALF 415

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M   G  PD VTF+C+L+ C+HSG+V EG+  F+ M   YG+    +HY CM+D+L R
Sbjct: 416 LEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEHYICMVDLLSR 475

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
            G LD+A E +Q  P   D  +W +LL +CRV+ N  +G++V+ ++ EL P     +  +
Sbjct: 476 GGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKKVSRMIQELGPEGTGNFVLL 535

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           SN YS  G F+ + ++R     +   +  G S IE+N
Sbjct: 536 SNIYSAAGRFDEAAEVRIIQKVQGFKKSPGCSWIEIN 572



 Score =  159 bits (401), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 126/492 (25%), Positives = 221/492 (44%), Gaps = 24/492 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK--FRHPKQALYLY 98
           Q +++ S   +D +VK   L  A  +F  MPARD+V +N +++G       H   A  L 
Sbjct: 42  QADLFVSTALLDMYVKCACLPDAAHIFATMPARDLVAWNAMLAGYAHHGMYHHAVAHLLS 101

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN----------LYIG 148
            +M  H ++ +AST  ++L + +  G   +G  +H   +      N          + +G
Sbjct: 102 MQMQMHRLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLG 161

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-- 206
           + L+D+Y + G  + A  +FD +P RN  TW+ ++  F   SR  +   ++  M A+G  
Sbjct: 162 TALLDMYAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLC 221

Query: 207 -VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            + P   S    +R C+    L  G+QLH+ + K G V  ++   N+L+  Y+  G + +
Sbjct: 222 FLSPT--SIASALRACASLDHLRMGEQLHALLAKSG-VHADLTAGNSLLSMYAKAGLIDQ 278

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A   FD + V D +S++++VS Y       +A  +F +MQ C   P   + V  +   S 
Sbjct: 279 AIALFDEMAVKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSH 338

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              +  G+  HG V   G       + +AL DMY KC  I+ S  VF   P R +   N+
Sbjct: 339 LAALQHGRCSHGSVIIRGLA-SETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNT 397

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++      G  K+A  +F  M + G   D VT    L A S S     G     H     
Sbjct: 398 MIAGYGIHGLGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGK-HWFHVMGHG 456

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGRE 501
            G    +     ++D  SR G ++ +++  + +P   +V  + +++     Y    +G++
Sbjct: 457 YGLTPRMEHYICMVDLLSRGGFLDEAYEFIQSMPLRADVRVWVALLGACRVYKNIDLGKK 516

Query: 502 ALDMLEVMIQRG 513
              M++ +   G
Sbjct: 517 VSRMIQELGPEG 528



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 181/392 (46%), Gaps = 23/392 (5%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-----QPNPQLN------IYSSNRTIDD 53
           +L P   T+  L P       L+    + +YC      PN          +      +D 
Sbjct: 108 RLRPNASTLVALLPLLAQQGALAQGTSVHAYCIRACLHPNRNSKSKLTDGVLLGTALLDM 167

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI-KESAST 112
           + K G L  A+++FD MPAR+ VT++ LI G        QA  L+  M++ G+   S ++
Sbjct: 168 YAKCGSLLYARRVFDAMPARNEVTWSALIGGFVLCSRMTQAFLLFKAMLAQGLCFLSPTS 227

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            +S L  C++      G Q+H  +   G   +L  G+ L+ +Y + G   +A+ LFDE+ 
Sbjct: 228 IASALRACASLDHLRMGEQLHALLAKSGVHADLTAGNSLLSMYAKAGLIDQAIALFDEMA 287

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            ++  +++ ++  + +  R +E   ++ KM+A  VEP+  +   ++  CS    L  G+ 
Sbjct: 288 VKDTVSYSALVSGYVQNGRAEEAFLVFKKMQACNVEPDAATMVSLIPACSHLAALQHGRC 347

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
            H  VI  G       + NAL+D Y+ CG +  +++ F+ +P  D++SWN++++ Y  + 
Sbjct: 348 SHGSVIIRGLAS-ETSICNALIDMYAKCGRIDLSRQVFNMMPSRDIVSWNTMIAGYGIHG 406

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI-----HGYVTKLGFDHG 347
           L  +A  LF  M      P   +F+  L+  S +G V  GK       HGY      +H 
Sbjct: 407 LGKEATALFLEMNNLGFPPDGVTFICLLSACSHSGLVIEGKHWFHVMGHGYGLTPRMEH- 465

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
                  + D+  +   ++ +    +S P R+
Sbjct: 466 ----YICMVDLLSRGGFLDEAYEFIQSMPLRA 493


>gi|357131877|ref|XP_003567560.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Brachypodium distachyon]
          Length = 808

 Score =  272 bits (696), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 171/613 (27%), Positives = 309/613 (50%), Gaps = 14/613 (2%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-TFSSV 116
           G L+ A+ LFD++PA  +  YN LI      R P  AL LY  +    + +  + TF  V
Sbjct: 77  GDLSLARHLFDQIPAPGIHDYNALIRAY-SLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L  CS          +HC     G   +L++ + LVD+Y +      A  +F  +P R++
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMPARDV 195

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
             WN ML  +    +  + +     M+ +   PN  +   ++   +    L +G+ +H++
Sbjct: 196 VAWNAMLAGYALHGKYSDTIACLLLMQDDHA-PNASTLVALLPLLAQHGALSQGRAVHAY 254

Query: 237 VIK---LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
            ++   L      + V  AL+D Y+ CG L+ A + F+ + V + ++W+++V  +     
Sbjct: 255 SVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGFVLCGR 314

Query: 294 IFDALELFFRM---QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
           + +A  LF  M    LC   P+  S    L   +   ++  GKQ+H  + K G  H  + 
Sbjct: 315 MLEAFSLFKDMLAQGLCFLSPT--SVASALRACANLSDLCLGKQLHALLAKSGL-HTDLT 371

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
             ++L  MY K  +I+ +  +F+    +     ++L++  + +G   +A  +F  M    
Sbjct: 372 AGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQACN 431

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D  T+ + + A S  A+   G C   H   I  G  S  ++  +L+D Y++CG I+L
Sbjct: 432 VQPDVATMVSLIPACSHLAALQHGKCG--HGSVIVRGIASETSICNALIDMYAKCGRIDL 489

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           S Q+F+ +P+ ++V + +++ GY  +G+G+EA  +   M  +   PD VTF+C+++ C+H
Sbjct: 490 SRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACSH 549

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           SG+V EG+  F+ M   YGI    +HY  M+D+L R G LD+A + +Q  P   D  +W 
Sbjct: 550 SGLVTEGKRWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRVWG 609

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           +LL +CRVH N  +G++V++++ +L P     +  +SN +S  G F+ + ++R     + 
Sbjct: 610 ALLGACRVHKNIDLGKQVSSMIQQLGPEGTGNFVLLSNIFSAAGRFDEAAEVRIIQKEQG 669

Query: 651 LTRDIGHSLIEVN 663
             +  G S IE+N
Sbjct: 670 FKKSPGCSWIEIN 682



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 221/483 (45%), Gaps = 20/483 (4%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T   +   C++++ L S+  +  +  +     +++ S   +D + K      A  +
Sbjct: 127 PNNYTFPFVLKACSALLDLRSARAVHCHAARAGLHADLFVSTALVDVYAKCASFRHAATV 186

Query: 67  FDEMPARDMVTYNLLISGC---GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           F  MPARD+V +N +++G    GK+      L L  +   H    +AST  ++L + +  
Sbjct: 187 FRRMPARDVVAWNAMLAGYALHGKYSDTIACLLLMQD--DHA--PNASTLVALLPLLAQH 242

Query: 124 GFYTEGIQIHC---RVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           G  ++G  +H    R  SL      + +G+ L+D+Y + G  V A  +F+ +  RN  TW
Sbjct: 243 GALSQGRAVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTW 302

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEG---VEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
           + ++  F    R  E   ++  M A+G   + P   S    +R C+    L  GKQLH+ 
Sbjct: 303 SALVGGFVLCGRMLEAFSLFKDMLAQGLCFLSPT--SVASALRACANLSDLCLGKQLHAL 360

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           + K G +  ++   N+L+  Y+  G + +A   FD + V D +S++++VS Y       +
Sbjct: 361 LAKSG-LHTDLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADE 419

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A  +F +MQ C  +P + + V  +   S    +  GK  HG V   G       + +AL 
Sbjct: 420 AFRVFRKMQACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIA-SETSICNALI 478

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           DMY KC  I+ S  +F+  P R +   N+++      G  K+A  +F  M  +    D+V
Sbjct: 479 DMYAKCGRIDLSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDV 538

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           T    + A S S     G  R  H  A K G    +     ++D  +R G ++ ++Q  +
Sbjct: 539 TFICLISACSHSGLVTEGK-RWFHMMAHKYGITPRMEHYIGMVDLLARGGFLDEAYQFIQ 597

Query: 477 KIP 479
            +P
Sbjct: 598 GMP 600



 Score = 95.5 bits (236), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 75/328 (22%), Positives = 144/328 (43%), Gaps = 16/328 (4%)

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319
           CG L  A+  FD IP   +  +N+++  Y+               +    +P+  +F   
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L   S   ++   + +H +  + G  H  + V +AL D+Y KC     +  VF   P R 
Sbjct: 136 LKACSALLDLRSARAVHCHAARAGL-HADLFVSTALVDVYAKCASFRHAATVFRRMPARD 194

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL--SVSASANLGSCR 437
           +   N+++      G   D +     M D     D    ++TL AL   ++    L   R
Sbjct: 195 VVAWNAMLAGYALHGKYSDTIACLLLMQD-----DHAPNASTLVALLPLLAQHGALSQGR 249

Query: 438 LLHCCAIKS----GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
            +H  ++++      +  + V  +L+D Y++CGH+  + +VFE +   N V +++++ G+
Sbjct: 250 AVHAYSVRACSLHDHKDGVLVGTALLDMYAKCGHLVYASRVFEAMAVRNEVTWSALVGGF 309

Query: 494 SRNGMGREALDMLEVMIQRGL-IPDKVTFLCVLAGC-NHSGMVKEGQLVFNSMKSVYGID 551
              G   EA  + + M+ +GL      +    L  C N S +    QL  +++ +  G+ 
Sbjct: 310 VLCGRMLEAFSLFKDMLAQGLCFLSPTSVASALRACANLSDLCLGKQL--HALLAKSGLH 367

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            D    + ++ M  +AG++D+A  L  Q
Sbjct: 368 TDLTAGNSLLSMYAKAGLIDQATTLFDQ 395



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 61/245 (24%), Positives = 119/245 (48%), Gaps = 3/245 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ + N  +  + K+G ++ A  LFD+M  +D V+Y+ L+SG  +     +A  ++ +M 
Sbjct: 369 DLTAGNSLLSMYAKAGLIDQATTLFDQMVVKDTVSYSALVSGYVQNGKADEAFRVFRKMQ 428

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  ++   +T  S++  CS+      G   H  V+  G      I + L+D+Y + G   
Sbjct: 429 ACNVQPDVATMVSLIPACSHLAALQHGKCGHGSVIVRGIASETSICNALIDMYAKCGRID 488

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  +FD +P R++ +WN M+  +       E   ++  MK +  EP+ ++F  ++  CS
Sbjct: 489 LSRQIFDVMPARDIVSWNTMIAGYGIHGLGKEATALFLDMKHQACEPDDVTFICLISACS 548

Query: 223 IGMLLDEGKQ-LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVIS 280
              L+ EGK+  H    K G +   +     +VD  +  G L EA +    +P+  DV  
Sbjct: 549 HSGLVTEGKRWFHMMAHKYG-ITPRMEHYIGMVDLLARGGFLDEAYQFIQGMPLKADVRV 607

Query: 281 WNSIV 285
           W +++
Sbjct: 608 WGALL 612



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 29/137 (21%), Positives = 63/137 (45%), Gaps = 2/137 (1%)

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG + L+  +F++IP+P +  + +++  YS  G          +  +R   P+  TF  V
Sbjct: 76  CGDLSLARHLFDQIPAPGIHDYNALIRAYSLRGPALALRLYRSLRRRRLPQPNNYTFPFV 135

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  C+    ++  + V +   +  G+ AD    + ++D+  +      A  + ++ P   
Sbjct: 136 LKACSALLDLRSARAV-HCHAARAGLHADLFVSTALVDVYAKCASFRHAATVFRRMP-AR 193

Query: 585 DCMMWSSLLRSCRVHGN 601
           D + W+++L    +HG 
Sbjct: 194 DVVAWNAMLAGYALHGK 210


>gi|357443809|ref|XP_003592182.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355481230|gb|AES62433.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 912

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 171/595 (28%), Positives = 311/595 (52%), Gaps = 12/595 (2%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           D+V++  ++S   +     +A  +Y +M+  G+  +  TF  +L   S+    + G  +H
Sbjct: 182 DVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGKLLH 241

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
             ++  G  LNL + + +VD+Y +    V A+ + +  PE ++  W  ++  F +  +  
Sbjct: 242 AHLIMFGAELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQNLQVR 301

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           E + ++  M+  G+ PN  ++  ++   S  + LD G+Q HS VI +G  D ++++ NAL
Sbjct: 302 EAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLED-DLYIGNAL 360

Query: 254 VDFYSACGSLI-EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           VD Y  C  +   A K F  I   +V+ W S+++ +A+  L  D+ +LF  MQ    RP+
Sbjct: 361 VDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEKRLE-DSFQLFAEMQAAGVRPN 419

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +    L   S+T ++     +HG++ K   D   + V +AL D Y    +I+ + +V 
Sbjct: 420 SFTMSAILGACSKTRSLVPTMMLHGHIIKTKVD-IDIAVANALVDTYAGVGMIDEAWSVI 478

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
            +   R       L   L   G+   A+++   M ++GI +DE +L++ L     SA+A 
Sbjct: 479 GTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFL-----SAAAG 533

Query: 433 LGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           LG+    + LHC ++KSGF+   +VS SL+  YS+CG I  +++ F+ I  P+   +  +
Sbjct: 534 LGTMETGKQLHCYSVKSGFQRCHSVSNSLVHLYSKCGSIHDANRAFKDISEPDAFSWNGL 593

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           ++G+S NG+   AL   + M   G+ PD +T L +++ C+H G+++ G   F+SM+  Y 
Sbjct: 594 ISGFSWNGLISHALSTFDDMRLAGVKPDSITLLSLISACSHGGLLELGLEYFHSMQKEYH 653

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
           I     HY C++D+LGR G L++A  ++++     D ++  +LL +C +HGN  +G  +A
Sbjct: 654 ITPKLDHYMCLVDLLGRGGRLEEAMGVIEKMSFKPDSLICKTLLNACNLHGNVALGEDMA 713

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
              +EL+P D A+Y  ++N Y   G  +   + R     R L R  G   +E+ S
Sbjct: 714 RRCLELDPSDPAIYLLLANLYDNAGLSDFGEKTRRLMRERGLRRSPGQCWMEIRS 768



 Score =  217 bits (552), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 158/559 (28%), Positives = 281/559 (50%), Gaps = 20/559 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPL-SSSLLLDSYCQPNP------QLNIYSSNRTIDD 53
           ML TK      +++    TC  ++   +S+ L +  C  +P      Q ++Y +N  +  
Sbjct: 3   MLCTKTF----SLSRFQETCLRVLSFCNSNSLKEGICIHSPIIKLGLQHDLYLTNNLLSL 58

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K+  ++ A+ LFDEMP RD+V++  ++S   K +H   AL L+D M+  G   +  T 
Sbjct: 59  YAKTFGVHRARHLFDEMPNRDVVSWTTILSSHTKTKHHSDALQLFDMMIGSGEYPNEFTL 118

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-PSVRALDLFDELP 172
           SS L  C   G +  G+QIHC  + LG  +N ++G+ LV+ Y + G  SV A  L   + 
Sbjct: 119 SSALRSCFALGEFERGMQIHCSAVKLGLEMNRFVGTSLVEFYTKCGCCSVEAWKLLSLVK 178

Query: 173 E-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           +  ++ +W  ML +  E  +  E   +Y KM   GV PN  +F  ++   S  + L  GK
Sbjct: 179 DGGDVVSWTTMLSSLVENGKWGEAFEIYVKMIESGVYPNEFTFVKLLGAVSSFLGLSYGK 238

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
            LH+H+I  G  ++N+ +  A+VD YS C  +++A K  +  P  DV  W +++S +   
Sbjct: 239 LLHAHLIMFG-AELNLVLKTAVVDMYSKCRRMVDAIKVSNLTPEYDVYLWTTLISGFTQN 297

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
             + +A+ +F  M+L    P+  ++   LN +S   ++  G+Q H  V  +G +   +++
Sbjct: 298 LQVREAISVFRDMELSGLLPNNFTYSSLLNASSSILSLDLGEQFHSRVIIVGLE-DDLYI 356

Query: 352 QSALTDMYGKC-NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
            +AL DMY KC ++  ++V VF      ++ C  SL+        ++D+ ++F  M   G
Sbjct: 357 GNALVDMYMKCSHITTNAVKVFREITSPNVMCWTSLIAGFAEK-RLEDSFQLFAEMQAAG 415

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  +  T+S  L A S + S  L    +LH   IK+  + +IAV+ +L+D Y+  G I+ 
Sbjct: 416 VRPNSFTMSAILGACSKTRS--LVPTMMLHGHIIKTKVDIDIAVANALVDTYAGVGMIDE 473

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +  V   +   + + +T +    ++ G    AL +L  M   G+  D+ +    L+    
Sbjct: 474 AWSVIGTMNLRDSITYTCLAARLNQKGHHGMALKVLIHMCNDGIKMDEFSLASFLSAAAG 533

Query: 531 SGMVKEG-QLVFNSMKSVY 548
            G ++ G QL   S+KS +
Sbjct: 534 LGTMETGKQLHCYSVKSGF 552


>gi|357167109|ref|XP_003581008.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Brachypodium distachyon]
          Length = 921

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 191/660 (28%), Positives = 323/660 (48%), Gaps = 46/660 (6%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++ S N  +  +  S  +  A  LF +MP R++VT+ ++ISG  +     +   ++ 
Sbjct: 153 PSRDVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFR 212

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR--VLSLGFGLNLYIGSPLVDLYMR 157
            M   G     S F+SVLS  +  G    G+    R  VL  GF  ++ IG+ ++++Y R
Sbjct: 213 MMHHEGASPDQSNFASVLSAVT--GLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTR 270

Query: 158 MGPSVR-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
              ++  A+  FD + ERN  TW+ M+ A     R D  + +Y +   + + P+  +   
Sbjct: 271 DASALDIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVYGRDPVKSI-PSQTALLT 329

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
            +  C     + E + L   +      D  +   NA++  Y   G + EAK+ FD +P  
Sbjct: 330 GLARCG---RITEARILFEQI-----PDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFR 381

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           + ISW  +++ YA      +AL+L   +      PS+ S        S  G +  G+Q+H
Sbjct: 382 NTISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQVH 441

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
               K G    S +V +AL  MYGKC  +E    VF     +     NS + +L+ +  +
Sbjct: 442 SLAVKAGCQFNS-YVCNALISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNML 500

Query: 397 KDAVEMFGFMV--------------------DEGIGLDEVTLSTTLKALS------VSAS 430
           +DA  +F  M+                    DE +   +  L    K  S      +S  
Sbjct: 501 EDARHIFDNMLSRDVVSWTTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVC 560

Query: 431 ANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             LGS +L   +H  AIK G +S + V+ +LM  Y +CG  + SH+VF+ +   ++  + 
Sbjct: 561 GGLGSAKLGQQIHTVAIKHGMDSELIVANALMSMYFKCGCAD-SHKVFDSMEERDIFTWN 619

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           + + G +++G+GREA+ M E M   G++P++VTF+ +L  C+H+G+V EG   F SM   
Sbjct: 620 TFITGCAQHGLGREAIKMYEHMESVGVLPNEVTFVGLLNACSHAGLVDEGWQFFKSMSRD 679

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           YG+    +HY+CM+D+LGR G +  AE+ +   P   D ++WS+LL +C++H N  IGRR
Sbjct: 680 YGLTPLLEHYACMVDLLGRTGDVQGAEKFIYDMPIEPDTVIWSALLGACKIHKNAEIGRR 739

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
            A  L   EP +   Y  +SN YS +G +    ++R+    R ++++ G S +++ N  H
Sbjct: 740 AAEKLFTTEPSNAGNYVMLSNIYSSLGMWVEVAELRKIMKQRGVSKEPGCSWMQIRNKVH 799



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 122/618 (19%), Positives = 263/618 (42%), Gaps = 72/618 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +I + N  I  +  SG L  A+ LFD +   ++ T  +L+SG  +      A  ++D
Sbjct: 60  PHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSGYARLGRVLDARRVFD 119

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEG-IQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
                G+ E  +   + +  C    +   G I +  R+       ++   + +V  Y   
Sbjct: 120 -----GMPERNTVAWNAMVSC----YVQNGDITMARRLFDAMPSRDVTSWNSMVTGYCHS 170

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
              V A +LF ++P+RNL TW +M+  +  + +  +   ++  M  EG  P+  +F  ++
Sbjct: 171 RQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMHHEGASPDQSNFASVL 230

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE-AKKSFDFIPVDD 277
              +    L   + L   V+K G+ + ++ +  ++++ Y+   S ++ A K FD +   +
Sbjct: 231 SAVTGLQDLGVLEVLRPLVLKTGF-ESDVVIGTSILNVYTRDASALDIAIKFFDGMVERN 289

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
             +W+++++  +    I  A+ ++ R  +     SI S    L   +R G +   + +  
Sbjct: 290 EYTWSTMIAALSHGGRIDAAIAVYGRDPV----KSIPSQTALLTGLARCGRITEARILFE 345

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +         V   +A+   Y +  +++ +  +F+  P R+      ++     +G  +
Sbjct: 346 QIPD-----PIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNTISWAGMIAGYAQNGRSE 400

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+++   +   G+     +L+++  A S   +   G  R +H  A+K+G + N  V  +
Sbjct: 401 EALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETG--RQVHSLAVKAGCQFNSYVCNA 458

Query: 458 LMDAYSRCGHIELSHQVFEKIP-------------------------------SPNVVCF 486
           L+  Y +C ++E   QVF ++                                S +VV +
Sbjct: 459 LISMYGKCRNMEYVRQVFNRMRVKDTVSWNSFIAALVQNNMLEDARHIFDNMLSRDVVSW 518

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           T+I++ Y++   G EA++  + M+     P+      +L+ C   G  K GQ + +++  
Sbjct: 519 TTIISAYAQAERGDEAVEFFKTMLHEHEKPNSPILTILLSVCGGLGSAKLGQQI-HTVAI 577

Query: 547 VYGIDADRQHYSCMIDMLGRAG------ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            +G+D++    + ++ M  + G      + D  EE         D   W++ +  C  HG
Sbjct: 578 KHGMDSELIVANALMSMYFKCGCADSHKVFDSMEER--------DIFTWNTFITGCAQHG 629

Query: 601 NEIIGRRVANILMELEPV 618
              +GR    +   +E V
Sbjct: 630 ---LGREAIKMYEHMESV 644



 Score =  102 bits (253), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 101/470 (21%), Positives = 195/470 (41%), Gaps = 56/470 (11%)

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           R+G    A ++FD +P R++  WN M+ A+C     ++   +++ +    V    +    
Sbjct: 45  RLGRLREAREVFDAMPHRDIIAWNSMISAYCNSGMLEDARILFDAISGGNVRTATILLSG 104

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             R   +G +LD  +         G  + N    NA+V  Y   G +  A++ FD +P  
Sbjct: 105 YAR---LGRVLDARRVFD------GMPERNTVAWNAMVSCYVQNGDITMARRLFDAMPSR 155

Query: 277 DVISWNSIVSIYADYDLIFDALELF------------------------------FRMQL 306
           DV SWNS+V+ Y     + DA  LF                              FRM  
Sbjct: 156 DVTSWNSMVTGYCHSRQMVDAWNLFKQMPQRNLVTWTVMISGYVRIEQHGKGWDIFRMMH 215

Query: 307 CR-KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                P   +F   L+  +   ++   + +   V K GF+   V   S L       + +
Sbjct: 216 HEGASPDQSNFASVLSAVTGLQDLGVLEVLRPLVLKTGFESDVVIGTSILNVYTRDASAL 275

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           + ++  F+    R+    ++++ +L H G I  A+ ++        G D V    +  AL
Sbjct: 276 DIAIKFFDGMVERNEYTWSTMIAALSHGGRIDAAIAVY--------GRDPVKSIPSQTAL 327

Query: 426 SVSASANLGSC-RLLHCCAIKSGFESNIAVSCSLM-DAYSRCGHIELSHQVFEKIPSPNV 483
                  L  C R+     +       I VS + M   Y + G ++ + ++F+++P  N 
Sbjct: 328 LTG----LARCGRITEARILFEQIPDPIVVSWNAMITGYMQNGMVDEAKELFDRMPFRNT 383

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           + +  ++ GY++NG   EALD+L+ + + G++P   +       C+H G ++ G+ V +S
Sbjct: 384 ISWAGMIAGYAQNGRSEEALDLLQALHRNGMLPSLSSLTSSFLACSHIGALETGRQV-HS 442

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           +    G   +    + +I M G+   ++   ++  +     D + W+S +
Sbjct: 443 LAVKAGCQFNSYVCNALISMYGKCRNMEYVRQVFNRMR-VKDTVSWNSFI 491


>gi|224124484|ref|XP_002319343.1| predicted protein [Populus trichocarpa]
 gi|222857719|gb|EEE95266.1| predicted protein [Populus trichocarpa]
          Length = 848

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 179/636 (28%), Positives = 331/636 (52%), Gaps = 16/636 (2%)

Query: 41  QLNIYSSNRTI--DDFVKSGHLN---------SAKKLFDEMPAR-DMVTYNLLISGCGKF 88
           Q++ YS  +    D F++SG +           A +LF E+  + ++V +N++I G G+ 
Sbjct: 175 QIHGYSVRKVFYGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVMIGGFGEN 234

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
              + +L +Y    +  +K  +++F+S LS C    F + G+Q+HC ++ LGF  + Y+ 
Sbjct: 235 GLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGFENDPYVC 294

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + L+ +Y +      A ++FD++  +    WN M+ A+    R  + L++Y +MK   + 
Sbjct: 295 TSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYKQMKVLQIP 354

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+ L+   ++  C +    D G+ +H+ ++K   +  N+ + +AL+  YS CG+  +A  
Sbjct: 355 PDSLTATNVLSSCCLVGSYDFGRLIHAELVKRP-IQSNVALQSALLTMYSKCGNSDDANS 413

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F+ I   DV++W S++S +       +ALE +  M +  ++P        ++  +   N
Sbjct: 414 IFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASVVSACTGLKN 473

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           V  G  IHG   K G +   V V S+L DMY K N  + S  VF   P ++L   NS+++
Sbjct: 474 VNLGCTIHGLAIKSGLEQ-DVFVASSLVDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIIS 532

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
               +G    ++ +F  M   G+  D V++++ L ++S  A    G  + +H   I+   
Sbjct: 533 CYCRNGLPDLSISLFSQMTQYGLFPDSVSITSVLVSVSSVAVLRKG--KAVHGYLIRQRI 590

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
            S++ +  +L+D Y +CG ++ +  +F+ +   N+V +  ++ G   +G   +A+ + + 
Sbjct: 591 PSDLQLENALIDMYIKCGFLKYAQHIFQNMLQTNLVTWNIMIAGCGSHGDWLKAMSLFDE 650

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M   G+ PD +TF+ +L  CNH G ++EG  +F  M   +GI+   +HY  ++D+LGRAG
Sbjct: 651 MRSFGIAPDDITFISLLTSCNHCGFIEEGLKLFQLMTVEHGIEPRMEHYVNIVDLLGRAG 710

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
            LD A   ++  P   D  +W SLL SCRVH N  +G+  A+ L+++EP   + Y Q+ N
Sbjct: 711 RLDDAYAFVKNLPIEPDRSIWLSLLCSCRVHHNVELGKLAAHKLLDIEPSRGSNYVQLLN 770

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            Y E    + +  +R +   + L +  G S IEV +
Sbjct: 771 LYGENELQDRAANLRASMKEKGLKKTPGCSWIEVGN 806



 Score =  207 bits (526), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 152/566 (26%), Positives = 278/566 (49%), Gaps = 20/566 (3%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMP-----ARDMVTYNLLISGCGKFRHPKQALYLYD 99
           Y +   I+ + K G   +A K+FD++P      +D+  +N +++G  +F H K+ +  + 
Sbjct: 86  YITTSLINFYFKCGSFGNAVKVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFC 145

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M   G++  A +   +L        Y +  QIH   +   F  + ++ S L+ +Y   G
Sbjct: 146 RMQLFGVRPDAYSLCILLGASDGHLGYAK--QIHGYSVRKVFYGDPFLESGLIYMYFSCG 203

Query: 160 PSVRALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
             + A  LF EL ++ N+  WN+M+  F E    +  L +Y   K E V+    SF   +
Sbjct: 204 RPLDAWRLFKELEDKGNVVAWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTL 263

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C  G  +  G Q+H  ++KLG+ + + +V  +L+  YS C  + +A+  FD + V   
Sbjct: 264 SACCQGEFVSFGMQVHCDLVKLGFEN-DPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKT 322

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
             WN+++S Y      +D L+++ +M++ +  P   +    L+     G+  FG+ IH  
Sbjct: 323 ELWNAMISAYVGNGRSYDGLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAE 382

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + K      +V +QSAL  MY KC   + + ++F +  GR +    S+++    +    +
Sbjct: 383 LVKRPI-QSNVALQSALLTMYSKCGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYME 441

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+E +  M   G   D   +++ + A +   + NLG    +H  AIKSG E ++ V+ SL
Sbjct: 442 ALEFYNSMTVYGEKPDSDIMASVVSACTGLKNVNLGCT--IHGLAIKSGLEQDVFVASSL 499

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D YS+    ++S  VF  +P  N+V + SI++ Y RNG+   ++ +   M Q GL PD 
Sbjct: 500 VDMYSKFNFPKMSGNVFSDMPLKNLVAWNSIISCYCRNGLPDLSISLFSQMTQYGLFPDS 559

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           V+   VL   +   ++++G+ V   +     I +D Q  + +IDM  + G L  A+ + Q
Sbjct: 560 VSITSVLVSVSSVAVLRKGKAVHGYLIRQR-IPSDLQLENALIDMYIKCGFLKYAQHIFQ 618

Query: 579 ---QTPGGGDCMMWSSLLRSCRVHGN 601
              QT    + + W+ ++  C  HG+
Sbjct: 619 NMLQT----NLVTWNIMIAGCGSHGD 640



 Score =  162 bits (411), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 123/493 (24%), Positives = 244/493 (49%), Gaps = 18/493 (3%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDE 170
           T+ S+L  C        G  IH  +++ GF   + YI + L++ Y + G    A+ +FD+
Sbjct: 51  TYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAVKVFDK 110

Query: 171 LPE-----RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           LPE     +++  WN ++  +       E +  + +M+  GV P+  S C ++ G S G 
Sbjct: 111 LPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILL-GASDGH 169

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF-DFIPVDDVISWNSI 284
            L   KQ+H + ++  +   + F+ + L+  Y +CG  ++A + F +     +V++WN +
Sbjct: 170 -LGYAKQIHGYSVRKVFYG-DPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVVAWNVM 227

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  + +  L  ++LE++   +    +    SF   L+   +   V FG Q+H  + KLGF
Sbjct: 228 IGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFGMQVHCDLVKLGF 287

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           ++   +V ++L  MY KC ++E +  VF+    +  E  N+++++ + +G   D ++++ 
Sbjct: 288 ENDP-YVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYDGLKIYK 346

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M    I  D +T +  L +  +  S + G  RL+H   +K   +SN+A+  +L+  YS+
Sbjct: 347 QMKVLQIPPDSLTATNVLSSCCLVGSYDFG--RLIHAELVKRPIQSNVALQSALLTMYSK 404

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG+ + ++ +F  I   +VV + S+++G+ +N    EAL+    M   G  PD      V
Sbjct: 405 CGNSDDANSIFNTIKGRDVVAWGSMISGFCQNRKYMEALEFYNSMTVYGEKPDSDIMASV 464

Query: 525 LAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           ++ C     V  G  +   ++KS  G++ D    S ++DM  +      +  +    P  
Sbjct: 465 VSACTGLKNVNLGCTIHGLAIKS--GLEQDVFVASSLVDMYSKFNFPKMSGNVFSDMP-L 521

Query: 584 GDCMMWSSLLRSC 596
            + + W+S++ SC
Sbjct: 522 KNLVAWNSII-SC 533



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 103/392 (26%), Positives = 183/392 (46%), Gaps = 15/392 (3%)

Query: 210 NGLSFCY--MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
           N   F Y  +++ C     L  GK +HS +I  G+   + ++  +L++FY  CGS   A 
Sbjct: 46  NATRFTYPSLLKACGFLSNLQYGKTIHSTIITKGFFYSDPYITTSLINFYFKCGSFGNAV 105

Query: 268 KSFDFIPV-----DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
           K FD +P       DV  WNSIV+ Y  +    + +  F RMQL   RP   S    L  
Sbjct: 106 KVFDKLPESEVSGQDVTFWNSIVNGYFRFGHKKEGIAQFCRMQLFGVRPDAYSLCILL-- 163

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLE 381
            +  G++ + KQIHGY  +  F +G   ++S L  MY  C     +  +F+    + ++ 
Sbjct: 164 GASDGHLGYAKQIHGYSVRKVF-YGDPFLESGLIYMYFSCGRPLDAWRLFKELEDKGNVV 222

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             N ++     +G  ++++E++    +E + L   + ++TL A       + G    +HC
Sbjct: 223 AWNVMIGGFGENGLWENSLEVYLLAKNENVKLVSASFTSTLSACCQGEFVSFG--MQVHC 280

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             +K GFE++  V  SL+  YS+C  +E +  VF+++       + ++++ Y  NG   +
Sbjct: 281 DLVKLGFENDPYVCTSLLTMYSKCKLVEDAENVFDQVSVKKTELWNAMISAYVGNGRSYD 340

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
            L + + M    + PD +T   VL+ C   G    G+L+   +     I ++    S ++
Sbjct: 341 GLKIYKQMKVLQIPPDSLTATNVLSSCCLVGSYDFGRLIHAELVK-RPIQSNVALQSALL 399

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            M  + G  D A  +   T  G D + W S++
Sbjct: 400 TMYSKCGNSDDANSIF-NTIKGRDVVAWGSMI 430


>gi|356534091|ref|XP_003535591.1| PREDICTED: pentatricopeptide repeat-containing protein At5g52850,
           chloroplastic-like [Glycine max]
          Length = 903

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 180/670 (26%), Positives = 342/670 (51%), Gaps = 13/670 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML +   P   T+++   +C+++      + +  S  +   +LN       +D + K   
Sbjct: 108 MLGSGQCPNEFTLSSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDC 167

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
                KL   +   D+V++  +IS   +     +AL LY +M+  GI  +  TF  +L +
Sbjct: 168 TVEPHKLLAFVKDGDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGM 227

Query: 120 CSNAGF-YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            S  G     G  +H ++++ G  +NL + + ++ +Y +      A+ +  + P+ ++  
Sbjct: 228 PSFLGLGKGYGKVLHSQLITFGVEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCL 287

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  ++  F + S+  E +     M+  G+ PN  ++  ++   S  + L+ G+Q HS VI
Sbjct: 288 WTSIISGFVQNSQVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVI 347

Query: 239 KLGWVDVNIFVANALVDFYSACG-SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            +G ++ +I+V NALVD Y  C  +     K+F  I + +VISW S+++ +A++    ++
Sbjct: 348 MVG-LEGDIYVGNALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEES 406

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           ++LF  MQ    +P+  +    L   S+  ++   K++HGY+ K   D   + V +AL D
Sbjct: 407 VQLFAEMQAAGVQPNSFTLSTILGACSKMKSIIQTKKLHGYIIKTQVDI-DMAVGNALVD 465

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
            Y    + + + +V      R +    +L   L   G+ + A+ +   M ++ + +DE +
Sbjct: 466 AYAGGGMADEAWSVIGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFS 525

Query: 418 LSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           L++      +SA+A LG   + + LHC + KSGFE   +VS SL+ +YS+CG +  +++V
Sbjct: 526 LASF-----ISAAAGLGIMETGKQLHCYSFKSGFERCNSVSNSLVHSYSKCGSMRDAYRV 580

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F+ I  P+ V +  +++G + NG+  +AL   + M   G+ PD VTFL ++  C+   ++
Sbjct: 581 FKDITEPDRVSWNGLISGLASNGLISDALSAFDDMRLAGVKPDSVTFLSLIFACSQGSLL 640

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            +G   F SM+  Y I     HY C++D+LGR G L++A  +++  P   D +++ +LL 
Sbjct: 641 NQGLDYFYSMEKTYHITPKLDHYVCLVDLLGRGGRLEEAMGVIETMPFKPDSVIYKTLLN 700

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +C +HGN  +G  +A   +EL+P D A+Y  +++ Y   G  +   + R+    R L R 
Sbjct: 701 ACNLHGNVPLGEDMARRCLELDPCDPAIYLLLASLYDNAGLPDFGDKTRKLMRERGLRRS 760

Query: 655 IGHSLIEVNS 664
                +EV S
Sbjct: 761 PRQCWMEVKS 770



 Score =  204 bits (518), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 156/556 (28%), Positives = 273/556 (49%), Gaps = 14/556 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPL-SSSLLLDSYCQPNP------QLNIYSSNRTIDD 53
           ML +K +    +      TC  ++ L +S  L +  C  +P      Q ++Y SN  +  
Sbjct: 1   MLCSKKVSNSFSPCRFRETCLQVLSLCNSQTLKEGACVHSPIIKVGLQHDLYLSNNLLCL 60

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K   +  A+ LFDEMP RD+V++  L+S   + +H  +AL L+D M+  G   +  T 
Sbjct: 61  YAKCFGVGQARHLFDEMPHRDVVSWTTLLSAHTRNKHHFEALQLFDMMLGSGQCPNEFTL 120

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           SS L  CS  G +  G +IH  V+ LG  LN  +G+ LVDLY +   +V    L   + +
Sbjct: 121 SSALRSCSALGEFEFGAKIHASVVKLGLELNHVLGTTLVDLYTKCDCTVEPHKLLAFVKD 180

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQ 232
            ++ +W  M+ +  E S+  E L++Y KM   G+ PN  +F  ++   S +G+    GK 
Sbjct: 181 GDVVSWTTMISSLVETSKWSEALQLYVKMIEAGIYPNEFTFVKLLGMPSFLGLGKGYGKV 240

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           LHS +I  G V++N+ +  A++  Y+ C  + +A K     P  DV  W SI+S +    
Sbjct: 241 LHSQLITFG-VEMNLMLKTAIICMYAKCRRMEDAIKVSQQTPKYDVCLWTSIISGFVQNS 299

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            + +A+     M+L    P+  ++   LN +S   ++  G+Q H  V  +G + G ++V 
Sbjct: 300 QVREAVNALVDMELSGILPNNFTYASLLNASSSVLSLELGEQFHSRVIMVGLE-GDIYVG 358

Query: 353 SALTDMYGKC-NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
           +AL DMY KC +   + V  F      ++    SL+      G  +++V++F  M   G+
Sbjct: 359 NALVDMYMKCSHTTTNGVKAFRGIALPNVISWTSLIAGFAEHGFEEESVQLFAEMQAAGV 418

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             +  TLST L A S   S  +   + LH   IK+  + ++AV  +L+DAY+  G  + +
Sbjct: 419 QPNSFTLSTILGACSKMKS--IIQTKKLHGYIIKTQVDIDMAVGNALVDAYAGGGMADEA 476

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             V   +   +++ +T++    ++ G    AL ++  M    +  D+ +    ++     
Sbjct: 477 WSVIGMMNHRDIITYTTLAARLNQQGDHEMALRVITHMCNDEVKMDEFSLASFISAAAGL 536

Query: 532 GMVKEG-QLVFNSMKS 546
           G+++ G QL   S KS
Sbjct: 537 GIMETGKQLHCYSFKS 552


>gi|302757275|ref|XP_002962061.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
 gi|300170720|gb|EFJ37321.1| hypothetical protein SELMODRAFT_76226 [Selaginella moellendorffii]
          Length = 847

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 178/625 (28%), Positives = 317/625 (50%), Gaps = 18/625 (2%)

Query: 19  TCTSIVPLSSSLLLDS-YCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVT 77
            C+SI  L    +L S     + + +    N  ++ + K+G ++ ++ LF  M  +++VT
Sbjct: 216 ACSSIPSLEQGTVLHSRLLASSVECDGVVGNALLNFYAKAGLVHESRSLFSSMKVKNVVT 275

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE---GIQIHC 134
           ++ +++   +  H + A+ L+ EM+  G+  +  TF S+L  CS+AG   +   G +IH 
Sbjct: 276 WSAIVAAYAQNGHHEPAVELFREMLLDGVAPNKVTFVSLLFSCSHAGLIKDLARGRKIHA 335

Query: 135 RVL-SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            +L S     ++ + + LV++Y R G    A  +FDE+  RN+ +WN ML  +    R  
Sbjct: 336 EILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWNAMLVTYSLNQRSL 395

Query: 194 EVLRMYNKM--KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV--DVNIFV 249
           E LR +  M  + EGV+P+ ++F      C +   L    ++HS  I   W     ++ +
Sbjct: 396 EALRFFRTMLLEGEGVKPDAITFVSAADACGMMGDLSRAVEIHSR-ISQSWPSNQTDVVL 454

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            +AL+  Y  C  L +A +  D +P  +VISW S++      +    A+ ++  MQL   
Sbjct: 455 GSALIKMYGNCRRLADAAQVLDQMPRTNVISWTSMILACEQNEDNEAAIRVYRAMQLHGH 514

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
           +P   + V  +  A+   ++  G + H      GF   +V V +AL  +YG    ++++ 
Sbjct: 515 KPDPVTMVTVIKAAANLHDLKRGIEFHAQAAAFGFATSTV-VGNALVTLYGTSGDLQAAE 573

Query: 370 AVFESAPGRSLE---CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            VF+    +S+E     NS++++   +G    A+  F  M+  G   D+ T    L A +
Sbjct: 574 NVFKELLQQSVEDVVTWNSMLSAWNQNGLPNQALGTFQRMLHHGRHPDKTTFVNILNACA 633

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
              S  L   ++ H  A   G +S+I V+ +L+  YSRCG++  + +VF  +   NVV +
Sbjct: 634 GDPSKLLQGVKI-HALAAACGLDSDIDVANTLLHMYSRCGNLSRARKVFHALTQKNVVSW 692

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           +++    + NG    AL     M+  G+ P+ VTF+ +L+GC+H+G++ E      +M S
Sbjct: 693 SAMAAACAHNGDADGALQAFRGMLHGGIQPNAVTFISILSGCSHTGLMDEAVSYLYAMSS 752

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            + +    QHY+C++D+L RAG   +AEEL    P   + + W+SLL +C VHG+     
Sbjct: 753 DHNLKPTVQHYACLLDLLARAGKFHRAEELATHLP---NPVAWNSLLGACLVHGDAETAA 809

Query: 607 RVANILMELEPVDFAVYSQVSNFYS 631
           R A+   +L+P+D A Y  +SN  S
Sbjct: 810 RAADTAAKLQPLDCAPYVSLSNAMS 834



 Score =  207 bits (527), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 137/580 (23%), Positives = 285/580 (49%), Gaps = 26/580 (4%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR----DMVTYNLLISGCGKFRHPKQA 94
           NP   +  S   ID + ++GH+  A ++F+ M  +    D++ +  +++   +  H ++A
Sbjct: 134 NP--TVICSTAMIDAYAQNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLGHAREA 191

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
           L L+ +M   G++     F + +  CS+     +G  +H R+L+     +  +G+ L++ 
Sbjct: 192 LLLFRKMDLQGLEPDRFAFVAAIDACSSIPSLEQGTVLHSRLLASSVECDGVVGNALLNF 251

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y + G    +  LF  +  +N+ TW+ ++ A+ +    +  + ++ +M  +GV PN ++F
Sbjct: 252 YAKAGLVHESRSLFSSMKVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGVAPNKVTF 311

Query: 215 CYMVRGCS-IGMLLD--EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
             ++  CS  G++ D   G+++H+ ++K      ++ VA ALV+ Y  CGS+ +AK  FD
Sbjct: 312 VSLLFSCSHAGLIKDLARGRKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFD 371

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK---RPSIRSFVEFLNFASRTGN 328
            +   ++ SWN+++  Y+      +AL  FFR  L      +P   +FV   +     G+
Sbjct: 372 EMQHRNITSWNAMLVTYSLNQRSLEALR-FFRTMLLEGEGVKPDAITFVSAADACGMMGD 430

Query: 329 VYFGKQIHGYVTK-LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           +    +IH  +++    +   V + SAL  MYG C  +  +  V +  P  ++    S++
Sbjct: 431 LSRAVEIHSRISQSWPSNQTDVVLGSALIKMYGNCRRLADAAQVLDQMPRTNVISWTSMI 490

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAI 444
            +   + + + A+ ++  M   G   D VT+ T +K     A+ANL   +     H  A 
Sbjct: 491 LACEQNEDNEAAIRVYRAMQLHGHKPDPVTMVTVIK-----AAANLHDLKRGIEFHAQAA 545

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI---PSPNVVCFTSIMNGYSRNGMGRE 501
             GF ++  V  +L+  Y   G ++ +  VF+++      +VV + S+++ +++NG+  +
Sbjct: 546 AFGFATSTVVGNALVTLYGTSGDLQAAENVFKELLQQSVEDVVTWNSMLSAWNQNGLPNQ 605

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           AL   + M+  G  PDK TF+ +L  C          +  +++ +  G+D+D    + ++
Sbjct: 606 ALGTFQRMLHHGRHPDKTTFVNILNACAGDPSKLLQGVKIHALAAACGLDSDIDVANTLL 665

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            M  R G L +A ++        + + WS++  +C  +G+
Sbjct: 666 HMYSRCGNLSRARKVFHALT-QKNVVSWSAMAAACAHNGD 704



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 155/589 (26%), Positives = 282/589 (47%), Gaps = 36/589 (6%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N  + +Y   R++ D +   H  S K +F         T+ +LI          +A+ L+
Sbjct: 34  NLLIQMYGRCRSVHDAIAVFHTVSRKNVF---------TWTILIVAHTHNGLFFEAVELF 84

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGL----NLYIGSPLV 152
            EM  HG++    TFS++L  CSN G  F + G  IH R+   G  L     +   + ++
Sbjct: 85  REMDVHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQQGLKLTSNPTVICSTAMI 144

Query: 153 DLYMRMGPSVRALDLFDELP----ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           D Y + G   +A ++F+ +     + +L  W  M+ A+ +L    E L ++ KM  +G+E
Sbjct: 145 DAYAQNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLGHAREALLLFRKMDLQGLE 204

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+  +F   +  CS    L++G  LHS ++    V+ +  V NAL++FY+  G + E++ 
Sbjct: 205 PDRFAFVAAIDACSSIPSLEQGTVLHSRLLASS-VECDGVVGNALLNFYAKAGLVHESRS 263

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG- 327
            F  + V +V++W++IV+ YA       A+ELF  M L    P+  +FV  L   S  G 
Sbjct: 264 LFSSMKVKNVVTWSAIVAAYAQNGHHEPAVELFREMLLDGVAPNKVTFVSLLFSCSHAGL 323

Query: 328 --NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
             ++  G++IH  + K     G V V +AL +MYG+C  +  +  VF+    R++   N+
Sbjct: 324 IKDLARGRKIHAEILKSTAAAGDVVVATALVNMYGRCGSVSDAKTVFDEMQHRNITSWNA 383

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++ +   +    +A+  F  M+ EG G+    ++    A +     +L     +H   I 
Sbjct: 384 MLVTYSLNQRSLEALRFFRTMLLEGEGVKPDAITFVSAADACGMMGDLSRAVEIH-SRIS 442

Query: 446 SGFESN---IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
             + SN   + +  +L+  Y  C  +  + QV +++P  NV+ +TS++    +N     A
Sbjct: 443 QSWPSNQTDVVLGSALIKMYGNCRRLADAAQVLDQMPRTNVISWTSMILACEQNEDNEAA 502

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           + +   M   G  PD VT + V+    +   +K G + F++  + +G        + ++ 
Sbjct: 503 IRVYRAMQLHGHKPDPVTMVTVIKAAANLHDLKRG-IEFHAQAAAFGFATSTVVGNALVT 561

Query: 563 MLGRAGILDKAE----ELLQQTPGGGDCMMWSSLLRSCRVHG--NEIIG 605
           + G +G L  AE    ELLQQ+    D + W+S+L +   +G  N+ +G
Sbjct: 562 LYGTSGDLQAAENVFKELLQQSV--EDVVTWNSMLSAWNQNGLPNQALG 608



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/507 (22%), Positives = 244/507 (48%), Gaps = 16/507 (3%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +L +  +A     G  +H ++++ G+  + Y+ + L+ +Y R      A+ +F  +  +N
Sbjct: 1   MLKLHGDAKNLDAGRAVHLQMITSGYHRDRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKN 60

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGM-LLDEGKQL 233
           + TW +++ A        E + ++ +M   GV+ +  +F  ++  CS +G+  L  GK +
Sbjct: 61  VFTWTILIVAHTHNGLFFEAVELFREMDVHGVQSDEFTFSAILEACSNLGLAFLSLGKTI 120

Query: 234 HSHVIKLGW---VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD----DVISWNSIVS 286
           HS + + G     +  +  + A++D Y+  G + +A + F+ + +     D+I+W ++++
Sbjct: 121 HSRIHQQGLKLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERMQLQVLDPDLIAWTAMMT 180

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y       +AL LF +M L    P   +FV  ++  S   ++  G  +H  +     + 
Sbjct: 181 AYNQLGHAREALLLFRKMDLQGLEPDRFAFVAAIDACSSIPSLEQGTVLHSRLLASSVEC 240

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V +AL + Y K  ++  S ++F S   +++   ++++ +   +G+ + AVE+F  M
Sbjct: 241 DGV-VGNALLNFYAKAGLVHESRSLFSSMKVKNVVTWSAIVAAYAQNGHHEPAVELFREM 299

Query: 407 VDEGIGLDEVTLSTTLKALSVSA-SANLGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSR 464
           + +G+  ++VT  + L + S +    +L   R +H   +KS     ++ V+ +L++ Y R
Sbjct: 300 LLDGVAPNKVTFVSLLFSCSHAGLIKDLARGRKIHAEILKSTAAAGDVVVATALVNMYGR 359

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI--QRGLIPDKVTFL 522
           CG +  +  VF+++   N+  + +++  YS N    EAL     M+    G+ PD +TF+
Sbjct: 360 CGSVSDAKTVFDEMQHRNITSWNAMLVTYSLNQRSLEALRFFRTMLLEGEGVKPDAITFV 419

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGID-ADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
                C   G +     + + +   +  +  D    S +I M G    L  A ++L Q P
Sbjct: 420 SAADACGMMGDLSRAVEIHSRISQSWPSNQTDVVLGSALIKMYGNCRRLADAAQVLDQMP 479

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRV 608
              + + W+S++ +C  + +     RV
Sbjct: 480 -RTNVISWTSMILACEQNEDNEAAIRV 505



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 47/208 (22%), Positives = 94/208 (45%), Gaps = 12/208 (5%)

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           + NL + R +H   I SG+  +  +   L+  Y RC  +  +  VF  +   NV  +T +
Sbjct: 8   AKNLDAGRAVHLQMITSGYHRDRYLCNLLIQMYGRCRSVHDAIAVFHTVSRKNVFTWTIL 67

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM--VKEGQLVFNSMKSV 547
           +  ++ NG+  EA+++   M   G+  D+ TF  +L  C++ G+  +  G+ + + +   
Sbjct: 68  IVAHTHNGLFFEAVELFREMDVHGVQSDEFTFSAILEACSNLGLAFLSLGKTIHSRIHQ- 126

Query: 548 YGIDADRQHY----SCMIDMLGRAGILDKAEEL---LQQTPGGGDCMMWSSLLRSCRV-- 598
            G+           + MID   + G +++A E+   +Q      D + W++++ +     
Sbjct: 127 QGLKLTSNPTVICSTAMIDAYAQNGHIEQAAEIFERMQLQVLDPDLIAWTAMMTAYNQLG 186

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQV 626
           H  E +       L  LEP  FA  + +
Sbjct: 187 HAREALLLFRKMDLQGLEPDRFAFVAAI 214


>gi|449451892|ref|XP_004143694.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like [Cucumis sativus]
          Length = 673

 Score =  272 bits (696), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 161/536 (30%), Positives = 284/536 (52%), Gaps = 11/536 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q++ +++  G     ++    ++  +  G    A   F E+ E ++  WN +++ + + +
Sbjct: 20  QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 79

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             D  +RMY  M+   V PN  +F Y+++ C    +   GKQ+H    K G+   N+FV 
Sbjct: 80  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGF-GSNVFVQ 138

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           N+LV  Y+  G +  A+  FD +    V+SW SI+S Y       +AL +F  M+ C  +
Sbjct: 139 NSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVK 198

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + V  +   +   ++  GK IHG VTKLG +     +  +LT MY K  ++E +  
Sbjct: 199 PDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEF-EPDIVISLTTMYAKRGLVEVARF 257

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
            F      +L   N++++   ++G  ++A+++F  M+ + I +D +T+ +     +V AS
Sbjct: 258 FFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS-----AVLAS 312

Query: 431 ANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           A +GS    R L     KS +  +  V+  L+D Y++CG I L+  VF+++   +VV ++
Sbjct: 313 AQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWS 372

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
            ++ GY  +G G+EA+ +   M Q G+ P+  TF+ +L  C +SG+VKEG  +F+ M   
Sbjct: 373 VMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD- 431

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           +GI+   QHYSC++D+LGRAG L++A + +   P      +W +LL +C++H    +G  
Sbjct: 432 HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEI 491

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            A  L  L+P +   Y Q+SN Y+    +     +R     + L +D+GHS IE+N
Sbjct: 492 AAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 547



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 200/436 (45%), Gaps = 5/436 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G +N A K F E+   D++ +N +I G  +       + +Y +M    +  +  TF  VL
Sbjct: 48  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 107

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C        G QIH +    GFG N+++ + LV +Y + G    A  +FD+L +R + 
Sbjct: 108 KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 167

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  ++  + +   P E L ++ +M+   V+P+ ++   ++   +    L +GK +H  V
Sbjct: 168 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV 227

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            KLG ++    +  +L   Y+  G +  A+  F+ +   ++I WN+++S YA+     +A
Sbjct: 228 TKLG-LEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEA 286

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           ++LF  M     R    +    +  +++ G++   + + GY++K  +   +  V + L D
Sbjct: 287 IKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTF-VNTGLID 345

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  I  +  VF+    + +   + ++      G+ ++A+ ++  M   G+  ++ T
Sbjct: 346 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 405

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A   S     G   L H      G E +      ++D   R G++  ++     
Sbjct: 406 FIGLLTACKNSGLVKEG-WELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMS 463

Query: 478 IP-SPNVVCFTSIMNG 492
           +P  P V  + ++++ 
Sbjct: 464 MPIKPGVSVWGALLSA 479



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 176/393 (44%), Gaps = 5/393 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  N  +  + K G ++ A+ +FD++  R +V++  +ISG  +   P +AL ++ EM 
Sbjct: 134 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 193

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K       SV++  +N     +G  IH  V  LG      I   L  +Y + G   
Sbjct: 194 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 253

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F+ + + NL  WN M+  +      +E ++++ +M  + +  + ++    V   +
Sbjct: 254 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 313

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+  + L  ++ K  + D + FV   L+D Y+ CGS+  A+  FD +   DV+ W+
Sbjct: 314 QVGSLELARWLDGYISKSEYRD-DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWS 372

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            ++  Y  +    +A+ L+  M+     P+  +F+  L     +G V  G ++   +   
Sbjct: 373 VMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH 432

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G +    H  S + D+ G+   +  +     S P   ++   S+  +LL +  I   V +
Sbjct: 433 GIEPHHQHY-SCVVDLLGRAGYLNQAYDFIMSMP---IKPGVSVWGALLSACKIHRKVRL 488

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
                ++   LD       ++  ++ ASA+L +
Sbjct: 489 GEIAAEQLFILDPYNTGHYVQLSNLYASAHLWT 521


>gi|357468471|ref|XP_003604520.1| Coatomer subunit beta'-2 [Medicago truncatula]
 gi|355505575|gb|AES86717.1| Coatomer subunit beta'-2 [Medicago truncatula]
          Length = 1033

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 172/661 (26%), Positives = 328/661 (49%), Gaps = 16/661 (2%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYCQPNPQL---------NIYSSNRTIDDFVKSGHLNSAK 64
           T L P    + P +++   D   Q  P+          N+   N  +   +K G +  A+
Sbjct: 45  TNLNPPLNYVYPGTATECRDMIWQGKPEQRAPTAYYVPNMPELNSQLKQLMKLGKICEAR 104

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFSSVLSVCSNA 123
            +F++M  RD +++  LI+G     +  +AL L+  M V  G+++     S  L  C+  
Sbjct: 105 DMFNKMSHRDEISWTNLIAGYVNAANSNEALILFSNMWVDSGLQKDQFVVSVALKACALG 164

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
                G  +H   +  G   ++++ S LVD+YM++G + +   +F+ +  RN+ +W  ++
Sbjct: 165 MNVYFGELLHGFSVKSGLINSVFVSSALVDMYMKVGKTEQGCSVFENMTTRNVVSWTAVI 224

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
                     + L  +++M    V  +  +F   ++  +   LL  GK +H+  IK G+ 
Sbjct: 225 VGLVHAGCSLDGLSYFSEMWRSKVGYDSHTFAVALKASAESGLLHYGKAIHAQTIKQGFN 284

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           +   +V N L   YS C       + F  +   DV+SW +++  Y        AL+ F R
Sbjct: 285 ET-AYVVNTLGTMYSKCRKPDYVMRLFGKMSTPDVVSWTNLIMTYVQMGDEERALDAFKR 343

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M+     P+  +F   ++  +      +G+QIHG+  +LG    ++ V +++  +Y KC 
Sbjct: 344 MRKSDVSPNEYTFASVISACANLAITKWGEQIHGHALRLGLVD-ALSVSNSIITLYSKCG 402

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           +++ +  VF+    + +   +++++      + K+A     +M  EG   +E  L++ L 
Sbjct: 403 LLQEASLVFDGMTRKDIISWSTIISVYCQGSHAKEAFNYLSWMSREGPKPNEFALASVL- 461

Query: 424 ALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
             SV  S A L   + +H  A+  G +    V  +L+  YSR G+++ + ++F+ I + +
Sbjct: 462 --SVCGSMALLEPGKQVHAYALCIGLDHETMVHSALISMYSRSGNLQEASKIFDSIKNND 519

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +V +T+++NGY+ +G  +EA+ + E +   GL+PD VTF+ +L  CNH+G+V  G   + 
Sbjct: 520 IVSWTAMINGYAEHGYSQEAISLFENISSVGLMPDYVTFIGILTACNHAGLVDLGFYYYK 579

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            M + Y I   ++HY C+ID+L RAG L +AE +++  P   D ++WS+LLR+CR HG+ 
Sbjct: 580 LMTNEYQIAPSKEHYGCIIDLLCRAGRLSEAEHMVRNMPFPCDDVVWSTLLRACRDHGDL 639

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
                 A  ++ L P     +  ++N YS  G  E +  +R+   ++ + ++ G S I  
Sbjct: 640 DRAIWAAEQMLRLHPNSAGAHITLANIYSASGRREEAAHVRKLMKSKGVIKEPGWSWINS 699

Query: 663 N 663
           N
Sbjct: 700 N 700


>gi|302788478|ref|XP_002976008.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
 gi|300156284|gb|EFJ22913.1| hypothetical protein SELMODRAFT_104228 [Selaginella moellendorffii]
          Length = 495

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 154/489 (31%), Positives = 267/489 (54%), Gaps = 4/489 (0%)

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           ++G+ L+++Y + G    A + F+ +  RN+ +W+ M+ A+ +    D+ L ++ KM+ E
Sbjct: 11  FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           GVEPN ++F  ++  C+    +++G+ +H  V +   +DV + V  ALV  Y  C  LIE
Sbjct: 71  GVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKK-LDVGLIVGTALVGMYGKCSRLIE 129

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A++ FD I   DV++W++++S YA    + +A++LF  M L   RP+    +  L   S 
Sbjct: 130 ARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSS 189

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G +  GK  H  V   GF    V   + L  MYGKC  + S+ AVF     R L   ++
Sbjct: 190 AGALAEGKMTHELVVICGFG-ADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSA 248

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++  +   G+ KDA   F  M  EG+  D VT  + L A S+  +   G   ++H     
Sbjct: 249 MLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEG--HVIHTRIRA 306

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            GF+S + +  SL+D Y +CG ++ + ++F+++   NV+ +T+++    ++  G+EAL++
Sbjct: 307 EGFQSVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITACVQHEQGKEALEL 366

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            E M + G+ PD+V FL ++  C+HSG+V+EG++ F  M          +H+  M+D+LG
Sbjct: 367 FEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLG 426

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           R+G L++AEEL++  P     + W++LL +C+ H +     RVA  ++ L P     Y  
Sbjct: 427 RSGKLNEAEELMEFMPVEPGVVGWNTLLSACKTHNDTERAGRVAGGMLVLGPGHAGPYVS 486

Query: 626 VSNFYSEIG 634
            SN  S  G
Sbjct: 487 FSNILSGKG 495



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 117/448 (26%), Positives = 226/448 (50%), Gaps = 4/448 (0%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +  N  ++ + K G +  A++ F+ M  R++++++ +++   +     QAL L+ +M   
Sbjct: 11  FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++ +  TF SVL  C+NA    +G  IH  V      + L +G+ LV +Y +    + A
Sbjct: 71  GVEPNEVTFLSVLDACANAEAVEQGEMIHRLVARKKLDVGLIVGTALVGMYGKCSRLIEA 130

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD + E+++ TW+ M+ A+ +L    E ++++  M  +GV PN +    ++  CS  
Sbjct: 131 RQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSA 190

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L EGK  H  V+  G+   ++   N L+  Y  CG L  AK  F  +   D+ISW+++
Sbjct: 191 GALAEGKMTHELVVICGF-GADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAM 249

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +++ A++    DA   F RM L   +P   +FV  L+  S  G +  G  IH  +   GF
Sbjct: 250 LAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEGF 309

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               ++++++L DMYGKC  ++++  +F+    R++    +++T+ +     K+A+E+F 
Sbjct: 310 -QSVMYIENSLIDMYGKCGSLQAAREIFDRMSHRNVITWTTMITACVQHEQGKEALELFE 368

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M   G+  D+V   + + + S S     G    L     +S F   +     ++D   R
Sbjct: 369 EMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQS-FTPGVEHFVGMLDLLGR 427

Query: 465 CGHIELSHQVFEKIP-SPNVVCFTSIMN 491
            G +  + ++ E +P  P VV + ++++
Sbjct: 428 SGKLNEAEELMEFMPVEPGVVGWNTLLS 455



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 74/250 (29%), Positives = 131/250 (52%), Gaps = 11/250 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ + N  I  + K G L SAK +F  M  RD+++++ +++   +  H K A   +  M 
Sbjct: 211 DVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRMD 270

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+K    TF S+L  CS  G   EG  IH R+ + GF   +YI + L+D+Y + G   
Sbjct: 271 LEGVKPDYVTFVSLLDACSLLGALVEGHVIHTRIRAEGFQSVMYIENSLIDMYGKCGSLQ 330

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A ++FD +  RN+ TW  M+ A  +  +  E L ++ +M+  GV+P+ ++F  ++  CS
Sbjct: 331 AAREIFDRMSHRNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSCS 390

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVAN-----ALVDFYSACGSLIEAKKSFDFIPVD- 276
              L++EG+     +  L  V+   F         ++D     G L EA++  +F+PV+ 
Sbjct: 391 HSGLVEEGR-----IYFLKMVEDQSFTPGVEHFVGMLDLLGRSGKLNEAEELMEFMPVEP 445

Query: 277 DVISWNSIVS 286
            V+ WN+++S
Sbjct: 446 GVVGWNTLLS 455


>gi|224084249|ref|XP_002307242.1| predicted protein [Populus trichocarpa]
 gi|222856691|gb|EEE94238.1| predicted protein [Populus trichocarpa]
          Length = 561

 Score =  272 bits (695), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 173/565 (30%), Positives = 302/565 (53%), Gaps = 11/565 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M + G+  + STFSS L  C     +  G  IH + +  GF  ++++ + L+ +Y   G 
Sbjct: 1   MGTQGLTPNGSTFSSSLQACCLLEDWFMGSLIHGQSVKHGFFNDVFVQTSLLGMYSNCGD 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F  + +++   WN M+    +  + +E + ++ KM   G+ P   ++  ++  
Sbjct: 61  LESANKVFGCVVQKDAVLWNSMIFGNLKNEKLEEGVLLFGKMVRHGIVPTEFTYSMILNA 120

Query: 221 CSIGMLLD--EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           C  G L D   G+ +H+ VI L  V  ++ + NAL+D Y +CG        F+ I   D+
Sbjct: 121 C--GKLGDCRWGQVIHAQVIVLN-VLADLPLQNALLDMYCSCGDTETGFNVFNKIENPDL 177

Query: 279 ISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           +SWNS++S YA+     DA+ LF ++  +   +P   +F   ++  S      +GK +H 
Sbjct: 178 VSWNSMISGYAENGEGADAMNLFLQLVGVFLPKPDEYTFAAVISATSAFSATCYGKPLHA 237

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            V K+G +  SV + + L  MY K   IES+  VF    G+ +     ++      G  +
Sbjct: 238 QVLKVGSER-SVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVVLWTEMIMGHSRLGGGE 296

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A+++F  M  EG  +D   LS  L A +  A+ N G   ++H   +K G ++ I+V  S
Sbjct: 297 SAIKLFSMMCHEGYKIDSFALSGALSACADLATLNQG--EMIHTQTVKRGCDAEISVCGS 354

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+  Y++ G +  +  +F ++ +P++ C+ S++ GYS++GM  EA+ +   ++  G  PD
Sbjct: 355 LVHMYAKNGDLHAARSIFSQVSNPDLKCWNSMLGGYSQHGMAEEAMIIFAKILVNGQRPD 414

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           +VTFL +L+ C+HSG+V+EG+L+++ +K    I   + HYSCM+ +L RAG+LD+AEEL+
Sbjct: 415 QVTFLSLLSACSHSGLVEEGKLLWSHIKKNDVIPGPK-HYSCMVSLLSRAGLLDEAEELI 473

Query: 578 QQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
            ++    D + +W +LL SC    N  IG R A  +++LEP D A +  +SN Y+  G +
Sbjct: 474 IKSTYSKDHLELWRTLLSSCVNKRNLKIGVRAAEEILQLEPEDSATHILLSNLYAAAGRW 533

Query: 637 EVSMQIRETALARKLTRDIGHSLIE 661
           E   ++R       + +D G S IE
Sbjct: 534 EAVAEMRRKISGLMIEKDPGLSWIE 558



 Score =  128 bits (322), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/403 (24%), Positives = 188/403 (46%), Gaps = 11/403 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++     +  +   G L SA K+F  +  +D V +N +I G  K    ++ + L+ +MV
Sbjct: 44  DVFVQTSLLGMYSNCGDLESANKVFGCVVQKDAVLWNSMIFGNLKNEKLEEGVLLFGKMV 103

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            HGI  +  T+S +L+ C   G    G  IH +V+ L    +L + + L+D+Y   G + 
Sbjct: 104 RHGIVPTEFTYSMILNACGKLGDCRWGQVIHAQVIVLNVLADLPLQNALLDMYCSCGDTE 163

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV---EPNGLSFCYMVR 219
              ++F+++   +L +WN M+  + E     + + ++  ++  GV   +P+  +F  ++ 
Sbjct: 164 TGFNVFNKIENPDLVSWNSMISGYAENGEGADAMNLF--LQLVGVFLPKPDEYTFAAVIS 221

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             S       GK LH+ V+K+G  + ++F+   L+  Y   G +  A++ F+ I   DV+
Sbjct: 222 ATSAFSATCYGKPLHAQVLKVG-SERSVFIGTTLLSMYLKNGDIESAEQVFNMIEGKDVV 280

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHG 337
            W  ++  ++       A++LF  M  C +   I SF     L+  +    +  G+ IH 
Sbjct: 281 LWTEMIMGHSRLGGGESAIKLFSMM--CHEGYKIDSFALSGALSACADLATLNQGEMIHT 338

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
              K G D   + V  +L  MY K   + ++ ++F       L+C NS++      G  +
Sbjct: 339 QTVKRGCD-AEISVCGSLVHMYAKNGDLHAARSIFSQVSNPDLKCWNSMLGGYSQHGMAE 397

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
           +A+ +F  ++  G   D+VT  + L A S S     G     H
Sbjct: 398 EAMIIFAKILVNGQRPDQVTFLSLLSACSHSGLVEEGKLLWSH 440



 Score = 90.1 bits (222), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 55/229 (24%), Positives = 111/229 (48%), Gaps = 8/229 (3%)

Query: 19  TCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTI-------DDFVKSGHLNSAKKLFDEM 70
           T  +++  +S+     Y +P + Q+    S R++         ++K+G + SA+++F+ +
Sbjct: 215 TFAAVISATSAFSATCYGKPLHAQVLKVGSERSVFIGTTLLSMYLKNGDIESAEQVFNMI 274

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +D+V +  +I G  +    + A+ L+  M   G K  +   S  LS C++     +G 
Sbjct: 275 EGKDVVLWTEMIMGHSRLGGGESAIKLFSMMCHEGYKIDSFALSGALSACADLATLNQGE 334

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            IH + +  G    + +   LV +Y + G    A  +F ++   +L  WN ML  + +  
Sbjct: 335 MIHTQTVKRGCDAEISVCGSLVHMYAKNGDLHAARSIFSQVSNPDLKCWNSMLGGYSQHG 394

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             +E + ++ K+   G  P+ ++F  ++  CS   L++EGK L SH+ K
Sbjct: 395 MAEEAMIIFAKILVNGQRPDQVTFLSLLSACSHSGLVEEGKLLWSHIKK 443


>gi|297722687|ref|NP_001173707.1| Os03g0840400 [Oryza sativa Japonica Group]
 gi|255675038|dbj|BAH92435.1| Os03g0840400 [Oryza sativa Japonica Group]
          Length = 1632

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 172/618 (27%), Positives = 317/618 (51%), Gaps = 17/618 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G +  A+ LFD MP RD V++N LI+G       + AL  + +  + G      TF
Sbjct: 20  YCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLALDAFRDARASGDGVDRFTF 79

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           ++ L+ C+  G + +G  +H   +  G     ++ + ++D+Y + G       LFD   E
Sbjct: 80  AAALASCARVGDWRDGRVVHGLAVVSGLARTAFLTNSVIDMYAKCGMIDEVRLLFDRAEE 139

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQ 232
           R  A+WNL+L A+  +  P+  + +   M   GV+ +  +   +++ CS +G   D  + 
Sbjct: 140 RGEASWNLLLSAYVRMGWPEVAVNVLVWMHRSGVKLDSFALGGILKACSELGDSEDVRRM 199

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY- 291
           LHS V+K+G +D+++FV +A+VD Y+  G L EA K FD IP  +V+ +N++++ +A   
Sbjct: 200 LHSCVVKVG-LDLDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLG 258

Query: 292 -----DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
                ++  +A+ LF  M   R +PS  +F   L   + T  V  G+QIH +V   G   
Sbjct: 259 NDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGL-Q 317

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
           G   + S L ++Y K   +  S+  F+      +    S++T+ + + + + A+ +F  +
Sbjct: 318 GDEFIASVLINLYSKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKALYLFREL 377

Query: 407 VDEGIGLDEVTLSTTLKA---LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
           +    G D+ T+S+ + A   LSV  +     C+ +HC A+K+G +       S +  Y 
Sbjct: 378 LYTRKGTDQFTISSVMSACAALSVPTT-----CKQIHCHAVKTGLDQFTVSGNSQIAMYR 432

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
             G ++ S Q FE+I   +   +++++  Y+ +G   +AL++ E M   G++ ++   L 
Sbjct: 433 NIGDLKASKQTFEQISCLDTFSWSAMILSYAVHGYESKALELFEKMKNLGVMMNESASLA 492

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
            L  C+H G+  EG   + +     G   D +  +CM+D+LGR G +  AE+ +  +   
Sbjct: 493 ALIACSHQGLGDEGLRYYENTIPDDGFSLDVKLKACMVDLLGRVGKIADAEDFIMSSGSE 552

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
            D ++W +LLR+CRVHG++    ++   LMELEP   + Y  + N Y + G+  ++M+ R
Sbjct: 553 NDPILWHALLRACRVHGDKERCTKIGEKLMELEPFSASSYVMLYNLYMDAGKISLAMRTR 612

Query: 644 ETALARKLTRDIGHSLIE 661
                R ++ + G S  +
Sbjct: 613 GLMRERGISNEAGISWTD 630



 Score =  110 bits (275), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 112/483 (23%), Positives = 212/483 (43%), Gaps = 31/483 (6%)

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
           +L   +   L++ + L+ LY R G    A  LFD +P R+  +WN ++  +  L      
Sbjct: 1   MLRAAYRPGLFLRNNLLALYCRCGDMRHARLLFDGMPRRDAVSWNTLIAGYSGLGSCRLA 60

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L  +   +A G   +  +F   +  C+      +G+ +H   +  G      F+ N+++D
Sbjct: 61  LDAFRDARASGDGVDRFTFAAALASCARVGDWRDGRVVHGLAVVSGLART-AFLTNSVID 119

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            Y+ CG + E +  FD        SWN ++S Y        A+ +   M         RS
Sbjct: 120 MYAKCGMIDEVRLLFDRAEERGEASWNLLLSAYVRMGWPEVAVNVLVWMH--------RS 171

Query: 316 FVEFLNFA--------SRTGNVY-FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
            V+  +FA        S  G+     + +H  V K+G D   V V SA+ DMY K   +E
Sbjct: 172 GVKLDSFALGGILKACSELGDSEDVRRMLHSCVVKVGLDL-DVFVGSAMVDMYAKNGGLE 230

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIK------DAVEMFGFMVDEGIGLDEVTLST 420
            ++ VF+  P +++   N+++      GN        +AV +F  M+ + I   + T  +
Sbjct: 231 EAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEIRIEAVTLFSNMLKKRIKPSKFTFKS 290

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            L+  +++ +   G  R +H   I SG + +  ++  L++ YS+   +  S + F+    
Sbjct: 291 VLEVCNLTNAVRCG--RQIHAHVILSGLQGDEFIASVLINLYSKARCVNDSLRCFDMTVK 348

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE-GQL 539
            +V  +TS++  + +N    +AL +   ++      D+ T   V++ C    +     Q+
Sbjct: 349 EDVFIWTSMITAFVQNEHFEKALYLFRELLYTRKGTDQFTISSVMSACAALSVPTTCKQI 408

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
             +++K+  G+D      +  I M    G L  +++  +Q     D   WS+++ S  VH
Sbjct: 409 HCHAVKT--GLDQFTVSGNSQIAMYRNIGDLKASKQTFEQI-SCLDTFSWSAMILSYAVH 465

Query: 600 GNE 602
           G E
Sbjct: 466 GYE 468



 Score =  108 bits (270), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 136/270 (50%), Gaps = 7/270 (2%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH---PK---QAL 95
           L+++  +  +D + K+G L  A K+FD +P +++V YN +I+G  +  +   P+   +A+
Sbjct: 211 LDVFVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYNAMIAGFARLGNDPCPEIRIEAV 270

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            L+  M+   IK S  TF SVL VC+       G QIH  V+  G   + +I S L++LY
Sbjct: 271 TLFSNMLKKRIKPSKFTFKSVLEVCNLTNAVRCGRQIHAHVILSGLQGDEFIASVLINLY 330

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            +      +L  FD   + ++  W  M+ AF +    ++ L ++ ++       +  +  
Sbjct: 331 SKARCVNDSLRCFDMTVKEDVFIWTSMITAFVQNEHFEKALYLFRELLYTRKGTDQFTIS 390

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  C+   +    KQ+H H +K G +D      N+ +  Y   G L  +K++F+ I  
Sbjct: 391 SVMSACAALSVPTTCKQIHCHAVKTG-LDQFTVSGNSQIAMYRNIGDLKASKQTFEQISC 449

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQ 305
            D  SW++++  YA +     ALELF +M+
Sbjct: 450 LDTFSWSAMILSYAVHGYESKALELFEKMK 479


>gi|302796685|ref|XP_002980104.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
 gi|300152331|gb|EFJ18974.1| hypothetical protein SELMODRAFT_111910 [Selaginella moellendorffii]
          Length = 623

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 168/587 (28%), Positives = 300/587 (51%), Gaps = 15/587 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N  +  + + G L+ A+  F  +  R++ ++ +LIS   +     + L L   M 
Sbjct: 36  DTYLGNLLVQMYGRCGSLDDARAAFRGIHQRNVFSWTILISLLVQNGEASEGLELLKFMD 95

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G + +  TF S+L  CS  G  + G +IH RV + G   ++  G+ L+++Y       
Sbjct: 96  LEGTEANKITFISLLGACSVTGDLSLGKKIHERVRAKGLETDIITGNALLNMYTTCDSLD 155

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F+ +  R++ +W +++ A+     P E L++Y +M+ E   P+ ++   ++  C+
Sbjct: 156 EARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRRMEQEFSRPDAVTLISVLEACA 215

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L EGK +H  ++  G V+ ++FV  A+V FY  C ++ +A++ FD I   D++ WN
Sbjct: 216 SLRTLVEGKTIHERIVASG-VETDVFVGTAVVSFYGKCEAVDDARQVFDRIMDKDIVCWN 274

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  YA       A  L+  M   + RP+  + +  L+  S T  +  G  +H      
Sbjct: 275 AMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDSCSSTCKMERGSSLHREAAAR 334

Query: 343 GF-DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE--CCNSLMTSLLHSGNIKDA 399
           G+  H SV   +AL +MY KC  +E++  VF  A  R+      N+++ +        +A
Sbjct: 335 GYLSHTSV--VNALINMYAKCGSLENATRVFIEATNRTTNVITWNTMIVANAQEDLNLEA 392

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVSC 456
           ++++  M  EGI   +VT  T L     +  AN G   + R +H  ++ +G  S++ V  
Sbjct: 393 LQIYHRMNQEGIKASDVTYGTVL-----AVCANFGDFTTGREVHSRSLATGCCSDV-VQN 446

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+  Y  CG++E +   FE + S NVV ++SI+  Y+RNG    A ++   M Q G++P
Sbjct: 447 SLICLYGGCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDRARNLFWTMNQDGVLP 506

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + VTF  VL  C+H+G+  EG   F SM+  + ++   +HY CM+++L ++G + +A   
Sbjct: 507 NIVTFTSVLHACSHAGLADEGWSYFLSMQGDHHLEPTPEHYGCMVNLLAKSGRVKQAASF 566

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623
           +   P   D   W SLL +C VH ++  G   A  L++ EP + A Y
Sbjct: 567 MSAMPVQPDASAWRSLLGACEVHTDKEYGALAAKQLLDAEPRNSAAY 613



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 134/499 (26%), Positives = 248/499 (49%), Gaps = 9/499 (1%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T+ ++L    N+    +G ++H +++S G   + Y+G+ LV +Y R G    A   F  +
Sbjct: 4   TYEALLKQYGNSKSLADGRRVHSQMISNGLDGDTYLGNLLVQMYGRCGSLDDARAAFRGI 63

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            +RN+ +W +++    +     E L +   M  EG E N ++F  ++  CS+   L  GK
Sbjct: 64  HQRNVFSWTILISLLVQNGEASEGLELLKFMDLEGTEANKITFISLLGACSVTGDLSLGK 123

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           ++H  V   G ++ +I   NAL++ Y+ C SL EA+  F+ +   DV+SW  I+S YA  
Sbjct: 124 KIHERVRAKG-LETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISAYAHA 182

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               +AL+L+ RM+    RP   + +  L   +    +  GK IH  +   G +   V V
Sbjct: 183 GYPLEALQLYRRMEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVE-TDVFV 241

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            +A+   YGKC  ++ +  VF+    + + C N+++ +   +   + A  ++  MV+  +
Sbjct: 242 GTAVVSFYGKCEAVDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQM 301

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             ++VTL T L + S +     GS   LH  A   G+ S+ +V  +L++ Y++CG +E +
Sbjct: 302 RPNDVTLITLLDSCSSTCKMERGSS--LHREAAARGYLSHTSVVNALINMYAKCGSLENA 359

Query: 472 HQVFEKIP--SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +VF +    + NV+ + +++   ++  +  EAL +   M Q G+    VT+  VLA C 
Sbjct: 360 TRVFIEATNRTTNVITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCA 419

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           + G    G+ V +S     G  +D    S +I + G  G L+ A+    ++    + + W
Sbjct: 420 NFGDFTTGREV-HSRSLATGCCSDVVQNS-LICLYGGCGNLEAAQTAF-ESVASKNVVSW 476

Query: 590 SSLLRSCRVHGNEIIGRRV 608
           SS++ +   +G E   R +
Sbjct: 477 SSIVAAYARNGEEDRARNL 495



 Score =  158 bits (399), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 101/396 (25%), Positives = 197/396 (49%), Gaps = 5/396 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           + +I + N  ++ +     L+ A+ +F+ M  RD+V++ ++IS      +P +AL LY  
Sbjct: 135 ETDIITGNALLNMYTTCDSLDEARLVFERMVFRDVVSWTIIISAYAHAGYPLEALQLYRR 194

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M     +  A T  SVL  C++     EG  IH R+++ G   ++++G+ +V  Y +   
Sbjct: 195 MEQEFSRPDAVTLISVLEACASLRTLVEGKTIHERIVASGVETDVFVGTAVVSFYGKCEA 254

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD + ++++  WN M+ A+ +    ++   +Y +M    + PN ++   ++  
Sbjct: 255 VDDARQVFDRIMDKDIVCWNAMIGAYAQNHCEEKAFALYLEMVENQMRPNDVTLITLLDS 314

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDV 278
           CS    ++ G  LH      G++  +  V NAL++ Y+ CGSL  A + F        +V
Sbjct: 315 CSSTCKMERGSSLHREAAARGYLS-HTSVVNALINMYAKCGSLENATRVFIEATNRTTNV 373

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           I+WN+++   A  DL  +AL+++ RM     + S  ++   L   +  G+   G+++H  
Sbjct: 374 ITWNTMIVANAQEDLNLEALQIYHRMNQEGIKASDVTYGTVLAVCANFGDFTTGREVHSR 433

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
               G    S  VQ++L  +YG C  +E++   FES   +++   +S++ +   +G    
Sbjct: 434 SLATGC--CSDVVQNSLICLYGGCGNLEAAQTAFESVASKNVVSWSSIVAAYARNGEEDR 491

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           A  +F  M  +G+  + VT ++ L A S +  A+ G
Sbjct: 492 ARNLFWTMNQDGVLPNIVTFTSVLHACSHAGLADEG 527


>gi|413946224|gb|AFW78873.1| hypothetical protein ZEAMMB73_227843 [Zea mays]
          Length = 778

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 169/622 (27%), Positives = 320/622 (51%), Gaps = 12/622 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC---GKFRHPKQALYLYD 99
           ++++ N  +  +   G    A+++FDEMPARD+V++N L+S     G     K+A+    
Sbjct: 153 DVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLTNGMLEDAKRAVV--- 209

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M+  G+  + ++  S+L  C        G+ +H  VL  G    + +G+ LVD+Y + G
Sbjct: 210 GMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLNSVVNLGNALVDMYGKFG 269

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               ++ +F+ + E+N  +WN  +  F      ++VL M+  M    V P  ++   ++ 
Sbjct: 270 DLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHDVTPGSVTLSSLLP 329

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                     GK+LH + I+   V+ +IF+AN L+D Y+  G   +A   F+ I V +V+
Sbjct: 330 ALVDLGYFHLGKELHGYSIRRA-VESDIFIANTLMDMYAKFGCSEKASAIFENIEVRNVV 388

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN++++         +A  L   MQ   + P+  + V  L   SR  +V  GKQIH + 
Sbjct: 389 SWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWS 448

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            +       + V +AL D+Y KC  +  +  +F+ +    +   N+L+     S    ++
Sbjct: 449 IRRSL-MSDLFVSNALIDVYAKCGQLNLARYIFDRSEKDGVSY-NTLIVGYSQSQCCFES 506

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  M   GI  D V+    L A S  ++   G  + +H   +K   +S+  ++ SL+
Sbjct: 507 LHLFQQMRLAGIEHDAVSFMGCLSACSNLSAFKQG--KEIHGVLVKRLLDSHPFLANSLL 564

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++ G ++ + ++F +I   +V  + +++ GY  +G    A ++ ++M   G+  D V
Sbjct: 565 DVYTKGGMLDTASKIFNRITQKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGIEYDHV 624

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +++ VL+ C+H G+V  G+  F+ M +   I   + HY+CM+D+LGRAG L ++ E+++ 
Sbjct: 625 SYIAVLSVCSHGGLVDRGKKYFSQMIA-QNIKPQQMHYACMVDLLGRAGQLSESAEIIRN 683

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   +  +W +LL SCR+HG+  + R  A  L EL+P +   Y+ + N YSE G +  +
Sbjct: 684 MPFRANSDVWGALLGSCRIHGDIELARLAAEHLFELKPENSGYYTLLRNMYSESGMWNEA 743

Query: 640 MQIRETALARKLTRDIGHSLIE 661
             +++   +RK+ ++  +S ++
Sbjct: 744 NGVKKLMKSRKVQKNPAYSWVQ 765



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/414 (29%), Positives = 208/414 (50%), Gaps = 7/414 (1%)

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD---EG 230
           R+   WN + RA    + P E LR+YN+M   GV P+  +F + +   +     +   +G
Sbjct: 78  RSAFLWNSLSRALASAALPCEALRVYNRMVRSGVRPDDRTFPFALHAAAAVAQAEHPAKG 137

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
            +LH+  ++ G +  ++F  N LV FY+ CG   +A++ FD +P  DV+SWNS+VS    
Sbjct: 138 AELHAAALRRGLLLADVFAGNTLVTFYAVCGRAADARRVFDEMPARDVVSWNSLVSALLT 197

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
             ++ DA      M       ++ S V  L       +  FG  +HG V K G +   V+
Sbjct: 198 NGMLEDAKRAVVGMMRSGVPVNVASLVSILPACGTERDEGFGLCVHGLVLKFGLN-SVVN 256

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           + +AL DMYGK   +ESS+ VF     ++    NS +    H+G  +D +EMF  M +  
Sbjct: 257 LGNALVDMYGKFGDLESSMHVFNGMQEKNEVSWNSAIGCFAHAGFHEDVLEMFRLMSEHD 316

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +    VTLS+ L AL      +LG  + LH  +I+   ES+I ++ +LMD Y++ G  E 
Sbjct: 317 VTPGSVTLSSLLPALVDLGYFHLG--KELHGYSIRRAVESDIFIANTLMDMYAKFGCSEK 374

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           +  +FE I   NVV + +++   ++NG   EA  ++  M + G  P+  T + +L  C+ 
Sbjct: 375 ASAIFENIEVRNVVSWNAMIANLTQNGAEAEAFRLVIEMQKNGECPNSFTLVNLLPACSR 434

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
              VK G+ + ++      + +D    + +ID+  + G L+ A  +  ++   G
Sbjct: 435 VASVKMGKQI-HAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYIFDRSEKDG 487



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 152/305 (49%), Gaps = 11/305 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  L P C+ +  +     + ++      + +++ SN  ID + K G LN A+ +
Sbjct: 420 PNSFTLVNLLPACSRVASVKMGKQIHAWSIRRSLMSDLFVSNALIDVYAKCGQLNLARYI 479

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD    +D V+YN LI G  + +   ++L+L+ +M   GI+  A +F   LS CSN   +
Sbjct: 480 FDR-SEKDGVSYNTLIVGYSQSQCCFESLHLFQQMRLAGIEHDAVSFMGCLSACSNLSAF 538

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            +G +IH  ++      + ++ + L+D+Y + G    A  +F+ + ++++A+WN M+  +
Sbjct: 539 KQGKEIHGVLVKRLLDSHPFLANSLLDVYTKGGMLDTASKIFNRITQKDVASWNTMILGY 598

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
               + D    +++ MK +G+E + +S+  ++  CS G L+D GK+  S +I        
Sbjct: 599 GMHGQIDVAFELFDLMKDDGIEYDHVSYIAVLSVCSHGGLVDRGKKYFSQMIAQNIKPQQ 658

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPV---DDVISWNSIVS---IYADYDLIFDALEL 300
           +  A  +VD     G L E+ +    +P     DV  W +++    I+ D +L   A E 
Sbjct: 659 MHYA-CMVDLLGRAGQLSESAEIIRNMPFRANSDV--WGALLGSCRIHGDIELARLAAEH 715

Query: 301 FFRMQ 305
            F ++
Sbjct: 716 LFELK 720


>gi|297739749|emb|CBI29931.3| unnamed protein product [Vitis vinifera]
          Length = 838

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 195/674 (28%), Positives = 335/674 (49%), Gaps = 61/674 (9%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           +R ID ++  G +++A KLFD++P+ ++  +N +ISG    +   Q L L+  M++  + 
Sbjct: 49  SRLIDIYLAHGEVDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVT 108

Query: 108 ESASTFSSVLSVCS--NAGFY-TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
              STF+SVL  CS   A F  TE  QIH +++  GFG +  + +PL+DLY + G    A
Sbjct: 109 PDESTFASVLRACSGGKAPFQVTE--QIHAKIIHHGFGSSPLVCNPLIDLYSKNGHVDLA 166

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F+ L  ++  +W  M+    +  R DE + ++ +M    V P    F  ++  C+  
Sbjct: 167 KLVFERLFLKDSVSWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKI 226

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            L   G+QLH  ++K G +    FV NALV  YS  G+LI A++ F  +   D IS+NS+
Sbjct: 227 ELFKLGEQLHGFIVKWG-LSSETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSL 285

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S  A       AL+LF +MQL   +P   +    L+  +  G  Y GKQ+H YV K+G 
Sbjct: 286 ISGLAQRGFSDRALQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKGKQLHSYVIKMGM 345

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               + ++ +L D+Y KC  IE++   F +    ++   N ++ +    GN+ ++  +F 
Sbjct: 346 SSDLI-IEGSLLDLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFL 404

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  EG+  ++ T  + L+  +   + +LG    +H   IKSGF+ N+ V   L+D Y++
Sbjct: 405 QMQIEGLMPNQYTYPSILRTCTSLGALDLG--EQIHTQVIKSGFQFNVYVCSVLIDMYAK 462

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G ++ +  + +++   +VV +T+++ GY+++ +  EAL + + M  +G+  D + F   
Sbjct: 463 HGELDTARGILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSA 522

Query: 525 LAGCNHSGMVKEGQ--------------------LVFNSMKSVYGI-----DADRQ---- 555
           ++ C     + +GQ                    L  N + ++Y       DA R+    
Sbjct: 523 ISACAGIQALNQGQQIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEM 582

Query: 556 ------HYSCMIDMLGRAGILDKA----EELLQ------------QTPGGGDCMMWSSLL 593
                  ++ MI    + G   +A    EE+ Q            + P   D M+W +LL
Sbjct: 583 PEKNVVSWNAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTFVGEMPIEPDAMIWRTLL 642

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
            +C VH N  IG   A  L+ELEP D A Y  +SN Y+  G+++   + R+    R + +
Sbjct: 643 SACTVHKNIEIGEFAARHLLELEPEDSATYVLLSNMYAVSGKWDYRDRTRQMMKDRGVKK 702

Query: 654 DIGHSLIEV-NSCH 666
           + G S IEV NS H
Sbjct: 703 EPGRSWIEVKNSIH 716



 Score =  182 bits (463), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 133/503 (26%), Positives = 242/503 (48%), Gaps = 13/503 (2%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   GI+ +  T+  +   C N+G   +  ++H R+   GF     +GS L+D+Y+  G 
Sbjct: 1   MEERGIRANVQTYLWLFEGCFNSGSLLDAKKLHARIFKSGFDGEDVLGSRLIDIYLAHGE 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A+ LFD++P  N++ WN ++          +VL +++ M  E V P+  +F  ++R 
Sbjct: 61  VDNAIKLFDDIPSSNVSFWNKVISGLLAKKLASQVLGLFSLMITENVTPDESTFASVLRA 120

Query: 221 CSIGML-LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           CS G       +Q+H+ +I  G+   +  V N L+D YS  G +  AK  F+ + + D +
Sbjct: 121 CSGGKAPFQVTEQIHAKIIHHGF-GSSPLVCNPLIDLYSKNGHVDLAKLVFERLFLKDSV 179

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW +++S  +      +A+ LF +M      P+   F   L+  ++      G+Q+HG++
Sbjct: 180 SWVAMISGLSQNGREDEAILLFCQMHKSAVIPTPYVFSSVLSACTKIELFKLGEQLHGFI 239

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G       V +AL  +Y +   + ++  +F     R     NSL++ L   G    A
Sbjct: 240 VKWGLS-SETFVCNALVTLYSRWGNLIAAEQIFSKMHRRDRISYNSLISGLAQRGFSDRA 298

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +++F  M  + +  D VT+++ L A +   +   G  + LH   IK G  S++ +  SL+
Sbjct: 299 LQLFEKMQLDCMKPDCVTVASLLSACASVGAGYKG--KQLHSYVIKMGMSSDLIIEGSLL 356

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +C  IE +H+ F    + NVV +  ++  Y + G   E+  +   M   GL+P++ 
Sbjct: 357 DLYVKCFDIETAHEYFLTTETENVVLWNVMLVAYGQLGNLSESYWIFLQMQIEGLMPNQY 416

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSC--MIDMLGRAGILDKAEEL 576
           T+  +L  C   G +  G+ +    +KS +  +     Y C  +IDM  + G LD A  +
Sbjct: 417 TYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNV----YVCSVLIDMYAKHGELDTARGI 472

Query: 577 LQQTPGGGDCMMWSSLLRSCRVH 599
           LQ+     D + W++++     H
Sbjct: 473 LQRLR-EEDVVSWTAMIAGYTQH 494



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 61/215 (28%), Positives = 108/215 (50%), Gaps = 6/215 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L+P   T  ++  TCTS+  L     +     +   Q N+Y  +  ID + K G L++A+
Sbjct: 411 LMPNQYTYPSILRTCTSLGALDLGEQIHTQVIKSGFQFNVYVCSVLIDMYAKHGELDTAR 470

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            +   +   D+V++  +I+G  +     +AL L+ EM + GI+     FSS +S C+   
Sbjct: 471 GILQRLREEDVVSWTAMIAGYTQHDLFAEALKLFQEMENQGIRSDNIGFSSAISACAGIQ 530

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSP-----LVDLYMRMGPSVRALDLFDELPERNLATW 179
              +G QIH +    G+  +L IG+      L+ LY + G    A   F E+PE+N+ +W
Sbjct: 531 ALNQGQQIHAQSYISGYSEDLSIGNALASNVLITLYSKCGSIEDAKREFFEMPEKNVVSW 590

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           N M+  + +     E + ++ +MK  G+ PN ++F
Sbjct: 591 NAMITGYSQHGYGSEAVSLFEEMKQLGLMPNHVTF 625


>gi|108706064|gb|ABF93859.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
 gi|125584837|gb|EAZ25501.1| hypothetical protein OsJ_09324 [Oryza sativa Japonica Group]
          Length = 781

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 175/641 (27%), Positives = 324/641 (50%), Gaps = 7/641 (1%)

Query: 27  SSSLLLDSYCQPNPQLNIY--SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           S +L+  +  +P P+L     SS   +      G ++ A +    +   D   +N++I G
Sbjct: 22  SQNLIPATSKEPPPRLPPKRGSSKSLVVSLAAEGRMDEAVEALAAVRGPDAFLHNVMIRG 81

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
                 P  AL  Y  M+  G +    TF  V+  C+  G   EG   H  V+ LG   +
Sbjct: 82  FADAGLPAGALAAYRGMLEDGARPDRFTFPVVVKCCARLGGLDEGRAAHGMVIKLGLEHD 141

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK- 203
           +Y  + LV  Y ++G    A  +FD +P R++ TWN M+  +         L  + +M  
Sbjct: 142 VYTCNSLVAFYAKLGLVEDAERVFDGMPVRDIVTWNTMVDGYVSNGLGSLALACFQEMHD 201

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
           A  V+ + +     +  C + +   +GK++H +VI+ G ++ +I V  +L+D Y  CG +
Sbjct: 202 ALEVQHDSVGIIAALAACCLEVSSMQGKEIHGYVIRHG-LEQDIKVGTSLLDMYCKCGEV 260

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
             A+  F  +P+  V++WN ++  YA  +   +A + F +M+    +  + + +  L   
Sbjct: 261 AYARSVFATMPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAAC 320

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           ++T +  +G+ +HGYV +  F    V +++AL +MYGK   +ESS  +F     ++L   
Sbjct: 321 AQTESSLYGRSVHGYVVRRQF-LPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSW 379

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N+++ + ++     +A+ +F  ++++ +  D  T+ST + A  +  S  L  CR +H   
Sbjct: 380 NNMIAAYMYKEMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGS--LRHCRQIHSYI 437

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           I  G+  N  +  +++  Y+R G +  S ++F+K+ S +V+ + +++ GY+ +G G+ AL
Sbjct: 438 IGLGYAENTLIMNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTAL 497

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
           +M + M   GL P++ TF+ VL  C+ SG+V EG + FN M   YG+    +HY CM D+
Sbjct: 498 EMFDEMKYNGLQPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEHYGCMTDL 557

Query: 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623
           LGR G L +  + ++  P      +W SLL + R   +  I    A  + +LE  +   Y
Sbjct: 558 LGREGDLREVLQFIESMPIDPTSRVWGSLLTASRNQNDIDIAEYAAERIFQLEHDNTGCY 617

Query: 624 SQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             +S+ Y++ G +E   ++R     + L R    SL+E++S
Sbjct: 618 IVLSSMYADAGRWEDVERVRLLMKEKGLRRTEPISLVELHS 658



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 173/372 (46%), Gaps = 11/372 (2%)

Query: 10  VRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDE 69
           V  I  LA  C  +  +    +     +   + +I      +D + K G +  A+ +F  
Sbjct: 210 VGIIAALAACCLEVSSMQGKEIHGYVIRHGLEQDIKVGTSLLDMYCKCGEVAYARSVFAT 269

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           MP R +VT+N +I G      P +A   + +M + G++    T  ++L+ C+       G
Sbjct: 270 MPLRTVVTWNCMIGGYALNERPDEAFDCFMQMRAEGLQVEVVTAINLLAACAQTESSLYG 329

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
             +H  V+   F  ++ + + L+++Y ++G    +  +F ++  + L +WN M+ A+   
Sbjct: 330 RSVHGYVVRRQFLPHVVLETALLEMYGKVGKVESSEKIFGKIANKTLVSWNNMIAAYMYK 389

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
               E + ++ ++  + + P+  +   +V    +   L   +Q+HS++I LG+ + N  +
Sbjct: 390 EMYTEAITLFLELLNQPLYPDYFTMSTVVPAFVLLGSLRHCRQIHSYIIGLGYAE-NTLI 448

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            NA++  Y+  G ++ +++ FD +   DVISWN+++  YA +     ALE+F  M+    
Sbjct: 449 MNAVLHMYARSGDVVASREIFDKMVSKDVISWNTMIMGYAIHGQGKTALEMFDEMKYNGL 508

Query: 310 RPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +P+  +FV  L   S +G V     +F   +  Y      +H        +TD+ G+   
Sbjct: 509 QPNESTFVSVLTACSVSGLVDEGWMHFNLMLQEYGMIPQIEH-----YGCMTDLLGREGD 563

Query: 365 IESSVAVFESAP 376
           +   +   ES P
Sbjct: 564 LREVLQFIESMP 575


>gi|347954536|gb|AEP33768.1| organelle transcript processing 82, partial [Nasturtium officinale]
          Length = 670

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 160/533 (30%), Positives = 283/533 (53%), Gaps = 35/533 (6%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +F+ + E NL  WN M R       P   L++Y  M + G+ PN  +F ++++ C+ 
Sbjct: 16  AISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKSCAK 75

Query: 224 GMLLDEGKQLHSHVIKLGW-VD-------VNIFVAN----------------------AL 253
                EG Q+H HV+KLG+ +D       ++++V N                      AL
Sbjct: 76  LKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSYTAL 135

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           V  Y++ G +  A+  FD IPV DV+SWN+++S Y +     +ALELF  M     RP  
Sbjct: 136 VTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVRPDE 195

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            + V  ++ ++R+G++  G+Q+H ++   GF   ++ + +AL D Y KC  +E++  +F 
Sbjct: 196 STMVTVISASARSGSIELGRQVHSWIADHGFG-SNLKIVNALIDFYSKCGEMETACGLFL 254

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
               + +   N L+    H    K+A+ +F  M+  G   ++VT+ + L A +   + ++
Sbjct: 255 GLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGAIDI 314

Query: 434 GSCRLLHCCAIK--SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           G  R +H    K   G  +  ++  SL+D YS+CG IE +HQVF  +   ++  + +++ 
Sbjct: 315 G--RWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAMIF 372

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G++ +G    A D+   M +  + PD +TF+ +L+ C+H+GM+  G+ +F SM   Y I 
Sbjct: 373 GFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGRHIFRSMTHNYKIT 432

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611
              +HY CMID+LG +G+  +AEE++       D ++W SLL++C++HGN  +G + A  
Sbjct: 433 PKLEHYGCMIDLLGHSGLFKEAEEMISTMTMEPDGVIWCSLLKACKMHGNVELGEKFAQN 492

Query: 612 LMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           L ++EP +   Y  +SN Y+  G +    +IR     + + +  G S IE++S
Sbjct: 493 LFKIEPNNPGSYVLLSNIYATAGRWNEVARIRGLLNDKGMKKVPGCSSIEIDS 545



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 128/517 (24%), Positives = 228/517 (44%), Gaps = 80/517 (15%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A  +F+ +   +++ +N +  G      P  AL LY  M+S G+  ++ TF  +L  
Sbjct: 13  LPYAISVFETIQEPNLLIWNTMFRGHALSPDPVSALKLYVCMISLGLLPNSYTFPFLLKS 72

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR---------------------- 157
           C+      EG+QIH  VL LG+ L+LY+ + L+ +Y++                      
Sbjct: 73  CAKLKASKEGLQIHGHVLKLGYELDLYVHTSLISMYVQNERLEDAHKVFDRSSHRDVVSY 132

Query: 158 ----MGPSVR-----ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
                G + R     A ++FDE+P +++ +WN M+  + E     E L ++ +M    V 
Sbjct: 133 TALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMMKTNVR 192

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+  +   ++   +    ++ G+Q+HS +   G+   N+ + NAL+DFYS CG +  A  
Sbjct: 193 PDESTMVTVISASARSGSIELGRQVHSWIADHGF-GSNLKIVNALIDFYSKCGEMETACG 251

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +   DVISWN ++  Y   +L  +AL LF  M    + P+  + +  L+  +  G 
Sbjct: 252 LFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACAHLGA 311

Query: 329 VYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           +  G+ IH Y+ K   G  + S  ++++L DMY KC  IE++  VF S   +SL   N++
Sbjct: 312 IDIGRWIHVYIDKRLKGVTNASS-LRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAWNAM 370

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +      G    A ++F  M    I  D++T                             
Sbjct: 371 IFGFAMHGRANAAFDIFSRMRKNEIKPDDITF---------------------------- 402

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-----SPNVVCFTSIMNGYSRNGMGRE 501
                      L+ A S  G ++L   +F  +      +P +  +  +++    +G+ +E
Sbjct: 403 ---------VGLLSACSHAGMLDLGRHIFRSMTHNYKITPKLEHYGCMIDLLGHSGLFKE 453

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           A +M+  M      PD V +  +L  C   G V+ G+
Sbjct: 454 AEEMISTMTME---PDGVIWCSLLKACKMHGNVELGE 487



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 121/490 (24%), Positives = 226/490 (46%), Gaps = 50/490 (10%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    +  +   G++ SA+ +FDE+P +D+V++N +ISG  +  + K+AL L+ EM+
Sbjct: 128 DVVSYTALVTGYASRGYIESARNMFDEIPVKDVVSWNAMISGYVETGNYKEALELFKEMM 187

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++   ST  +V+S  + +G    G Q+H  +   GFG NL I + L+D Y + G   
Sbjct: 188 KTNVRPDESTMVTVISASARSGSIELGRQVHSWIADHGFGSNLKIVNALIDFYSKCGEME 247

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  L  +++ +WN+++  +  L+   E L ++ +M   G  PN ++   ++  C+
Sbjct: 248 TACGLFLGLSYKDVISWNILIGGYTHLNLYKEALLLFQEMLRSGESPNDVTMLSILHACA 307

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++ K L  V     +  +L+D YS CG +  A + F+ +    + +W
Sbjct: 308 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYSKCGDIEAAHQVFNSMLHKSLPAW 367

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +     A ++F RM+    +P   +FV  L+  S  G +  G+        
Sbjct: 368 NAMIFGFAMHGRANAAFDIFSRMRKNEIKPDDITFVGLLSACSHAGMLDLGR-------- 419

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                   H+  ++T  Y             +  P   LE    ++  L HSG  K+A E
Sbjct: 420 --------HIFRSMTHNY-------------KITP--KLEHYGCMIDLLGHSGLFKEAEE 456

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG------FESNIAVS 455
           M   M  E    D V   + LKA  +  +  LG     +   I+          SNI  +
Sbjct: 457 MISTMTMEP---DGVIWCSLLKACKMHGNVELGEKFAQNLFKIEPNNPGSYVLLSNIYAT 513

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY-------SRNGMGREALDMLEV 508
               +  +R   + L+ +  +K+P  + +   S+++ +        RN      L+ +EV
Sbjct: 514 AGRWNEVARIRGL-LNDKGMKKVPGCSSIEIDSVVHEFIIGDKFHPRNREIYGMLEEMEV 572

Query: 509 MIQR-GLIPD 517
           ++Q  G +PD
Sbjct: 573 LLQEAGFVPD 582


>gi|449528002|ref|XP_004170996.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g12770-like, partial [Cucumis sativus]
          Length = 658

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 161/536 (30%), Positives = 284/536 (52%), Gaps = 11/536 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q++ +++  G     ++    ++  +  G    A   F E+ E ++  WN +++ + + +
Sbjct: 5   QVYVQLIVSGLHKCRFLMIKFINACLHFGDVNYAHKAFREVSEPDILLWNAIIKGYTQKN 64

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             D  +RMY  M+   V PN  +F Y+++ C    +   GKQ+H    K G+   N+FV 
Sbjct: 65  IVDAPIRMYMDMQISQVHPNCFTFLYVLKACGGTSVEGIGKQIHGQTFKYGF-GSNVFVQ 123

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           N+LV  Y+  G +  A+  FD +    V+SW SI+S Y       +AL +F  M+ C  +
Sbjct: 124 NSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMRQCNVK 183

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + V  +   +   ++  GK IHG VTKLG +     +  +LT MY K  ++E +  
Sbjct: 184 PDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEF-EPDIVISLTTMYAKRGLVEVARF 242

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
            F      +L   N++++   ++G  ++A+++F  M+ + I +D +T+ +     +V AS
Sbjct: 243 FFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRS-----AVLAS 297

Query: 431 ANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           A +GS    R L     KS +  +  V+  L+D Y++CG I L+  VF+++   +VV ++
Sbjct: 298 AQVGSLELARWLDGYISKSEYRDDTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWS 357

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
            ++ GY  +G G+EA+ +   M Q G+ P+  TF+ +L  C +SG+VKEG  +F+ M   
Sbjct: 358 VMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPD- 416

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           +GI+   QHYSC++D+LGRAG L++A + +   P      +W +LL +C++H    +G  
Sbjct: 417 HGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMSMPIKPGVSVWGALLSACKIHRKVRLGEI 476

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            A  L  L+P +   Y Q+SN Y+    +     +R     + L +D+GHS IE+N
Sbjct: 477 AAEQLFILDPYNTGHYVQLSNLYASAHLWTRVANVRLMMTQKGLNKDLGHSSIEIN 532



 Score =  125 bits (315), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 98/436 (22%), Positives = 200/436 (45%), Gaps = 5/436 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G +N A K F E+   D++ +N +I G  +       + +Y +M    +  +  TF  VL
Sbjct: 33  GDVNYAHKAFREVSEPDILLWNAIIKGYTQKNIVDAPIRMYMDMQISQVHPNCFTFLYVL 92

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C        G QIH +    GFG N+++ + LV +Y + G    A  +FD+L +R + 
Sbjct: 93  KACGGTSVEGIGKQIHGQTFKYGFGSNVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVV 152

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  ++  + +   P E L ++ +M+   V+P+ ++   ++   +    L +GK +H  V
Sbjct: 153 SWTSIISGYVQNGDPMEALNVFKEMRQCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLV 212

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            KLG ++    +  +L   Y+  G +  A+  F+ +   ++I WN+++S YA+     +A
Sbjct: 213 TKLG-LEFEPDIVISLTTMYAKRGLVEVARFFFNRMEKPNLILWNAMISGYANNGYGEEA 271

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           ++LF  M     R    +    +  +++ G++   + + GY++K  +   +  V + L D
Sbjct: 272 IKLFREMITKNIRVDSITMRSAVLASAQVGSLELARWLDGYISKSEYRDDTF-VNTGLID 330

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  I  +  VF+    + +   + ++      G+ ++A+ ++  M   G+  ++ T
Sbjct: 331 MYAKCGSIYLARCVFDRVADKDVVLWSVMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGT 390

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A   S     G   L H      G E +      ++D   R G++  ++     
Sbjct: 391 FIGLLTACKNSGLVKEG-WELFHLMP-DHGIEPHHQHYSCVVDLLGRAGYLNQAYDFIMS 448

Query: 478 IP-SPNVVCFTSIMNG 492
           +P  P V  + ++++ 
Sbjct: 449 MPIKPGVSVWGALLSA 464



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 176/393 (44%), Gaps = 5/393 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  N  +  + K G ++ A+ +FD++  R +V++  +ISG  +   P +AL ++ EM 
Sbjct: 119 NVFVQNSLVSMYAKFGQISYARIVFDKLHDRTVVSWTSIISGYVQNGDPMEALNVFKEMR 178

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K       SV++  +N     +G  IH  V  LG      I   L  +Y + G   
Sbjct: 179 QCNVKPDWIALVSVMTAYTNVEDLGQGKSIHGLVTKLGLEFEPDIVISLTTMYAKRGLVE 238

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F+ + + NL  WN M+  +      +E ++++ +M  + +  + ++    V   +
Sbjct: 239 VARFFFNRMEKPNLILWNAMISGYANNGYGEEAIKLFREMITKNIRVDSITMRSAVLASA 298

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+  + L  ++ K  + D + FV   L+D Y+ CGS+  A+  FD +   DV+ W+
Sbjct: 299 QVGSLELARWLDGYISKSEYRD-DTFVNTGLIDMYAKCGSIYLARCVFDRVADKDVVLWS 357

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            ++  Y  +    +A+ L+  M+     P+  +F+  L     +G V  G ++   +   
Sbjct: 358 VMIMGYGLHGHGQEAICLYNEMKQAGVCPNDGTFIGLLTACKNSGLVKEGWELFHLMPDH 417

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G +    H  S + D+ G+   +  +     S P   ++   S+  +LL +  I   V +
Sbjct: 418 GIEPHHQHY-SCVVDLLGRAGYLNQAYDFIMSMP---IKPGVSVWGALLSACKIHRKVRL 473

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
                ++   LD       ++  ++ ASA+L +
Sbjct: 474 GEIAAEQLFILDPYNTGHYVQLSNLYASAHLWT 506


>gi|147790104|emb|CAN67593.1| hypothetical protein VITISV_000699 [Vitis vinifera]
          Length = 825

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 179/636 (28%), Positives = 324/636 (50%), Gaps = 17/636 (2%)

Query: 39  NPQLNIYSSNRTIDDFVKSGH----LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           N  LN+YS+  T   ++ + +     +  +++FD M  R++V +N +IS   K     +A
Sbjct: 143 NSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEA 202

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG--FGLNLYIGSPLV 152
             ++  M+  GI+ +  +F +V         Y     ++  V+ LG  +  + ++ S  +
Sbjct: 203 FKMFRTMMRMGIRPTPVSFVNVFPAVWRMNDYDNANVLYGLVVKLGSDYVDDFFVVSSAI 262

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNG 211
            +Y  +G    A ++FD   ERN   WN M+  + + + P E + ++ + M++E    + 
Sbjct: 263 FMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDD 322

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++F   +   S    LD G+QLH++++K   + + + + NA++  YS CGS+  + K F 
Sbjct: 323 VTFLSALTAISQLQWLDLGRQLHAYILKSSTI-LQVVILNAIIVMYSRCGSIGTSFKVFS 381

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +   DV++WN++VS +    L  + L L F MQ         +    L+ AS   +   
Sbjct: 382 NMLERDVVTWNTMVSAFVQNGLDDEGLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEI 441

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE--SAPGRSLECCNSLMTS 389
           GKQ H Y+ + G     +     L DMY K  +I ++  +FE  S   R     N+++  
Sbjct: 442 GKQAHAYLIRHGIQFEGM--DGYLIDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAG 499

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
              +G  ++   +F  M+++ +  + VTL++ L A +   +  LG  + +H  AI+    
Sbjct: 500 YTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLG--KQIHGFAIRCFLN 557

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            N+ V  +L+D YS+ G I  +  VF +    N V +T+++  Y ++GMG  AL +   M
Sbjct: 558 QNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMILSYGQHGMGERALSLFHAM 617

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
           +  G+ PD VTF+ +L+ C+++G+V EG  +F SM+  Y I    +HY C+ DMLGR G 
Sbjct: 618 LGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSSEHYCCVADMLGRVGR 677

Query: 570 LDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV-- 626
           + +A E ++     G+   +W SLL +CR+HG   +G+ VAN L+E+E         V  
Sbjct: 678 VXEAYEFVKGLGEEGNTFRIWGSLLGACRIHGEFELGKVVANKLLEMEKGSXLTGYHVLL 737

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           SN Y+  G ++   ++R+    + L ++ G S +EV
Sbjct: 738 SNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 136/544 (25%), Positives = 250/544 (45%), Gaps = 25/544 (4%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFS 114
           + GH + A  LFD +P    V +N +I G      P  AL  Y  M  S   K  + TFS
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFS 108

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD-------- 166
           S L  C+ A     G  +HC VL   FG +  + + L+++Y      V  L         
Sbjct: 109 STLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNC 168

Query: 167 -----LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
                +FD + +RN+  WN M+  + +  R  E  +M+  M   G+ P  +SF  +    
Sbjct: 169 DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAV 228

Query: 222 SIGMLLDEGKQLHSHVIKLG--WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                 D    L+  V+KLG  +VD + FV ++ +  Y+  G +  A++ FD     +  
Sbjct: 229 WRMNDYDNANVLYGLVVKLGSDYVD-DFFVVSSAIFMYAELGCVDFAREIFDCCLERNTE 287

Query: 280 SWNSIVSIYADYDLIFDALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            WN+++  Y   +   +A++LF + M+  +      +F+  L   S+   +  G+Q+H Y
Sbjct: 288 VWNTMIGGYVQNNCPIEAIDLFVQVMESEQFXLDDVTFLSALTAISQLQWLDLGRQLHAY 347

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + K       V + +A+  MY +C  I +S  VF +   R +   N+++++ + +G   +
Sbjct: 348 ILKSS-TILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLDDE 406

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            + +   M  +G  +D VTL+  L   S   S  +G  +  H   I+ G +    +   L
Sbjct: 407 GLMLVFEMQKQGFMVDSVTLTALLSLASNLRSQEIG--KQAHAYLIRHGIQFE-GMDGYL 463

Query: 459 MDAYSRCGHIELSHQVFEK--IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +D Y++ G I  + Q+FEK      +   + +++ GY++NG+  E   +   MI++ + P
Sbjct: 464 IDMYAKSGLITTAQQLFEKNSXYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNVRP 523

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + VT   +L  CN  G +  G+ +       + ++ +    + ++DM  ++G +  AE +
Sbjct: 524 NAVTLASILPACNPMGTIGLGKQIHGFAIRCF-LNQNVFVGTALLDMYSKSGAITYAENV 582

Query: 577 LQQT 580
             +T
Sbjct: 583 FAET 586


>gi|222622177|gb|EEE56309.1| hypothetical protein OsJ_05395 [Oryza sativa Japonica Group]
          Length = 922

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 177/661 (26%), Positives = 321/661 (48%), Gaps = 55/661 (8%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++ S N  +  +  S  +  A+ LF++MP R++V++ ++ISG G+  +  +A  ++ 
Sbjct: 154 PSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFC 213

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   G+    S F+S LS     G       +    L  GF  ++ IG+ ++++Y R  
Sbjct: 214 KMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDT 273

Query: 160 PSV-RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
             +  A+  F+ + ERN  TW+ M+ A     R D  + +Y +   + +         ++
Sbjct: 274 SVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR----TALI 329

Query: 219 RGCSIGMLLDEGKQLHSHV---IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            G +    +D+ + L   +   I + W        NAL+  Y   G + EAK+ FD +P 
Sbjct: 330 TGLAQCGRIDDARILFEQIPEPIVVSW--------NALITGYMQNGMVNEAKELFDKMPF 381

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            + ISW  +++ YA      +AL L   +      PS+ S        S    +  G Q+
Sbjct: 382 RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H    K+G    S    +AL  MYGKC  +E +  VF     + +   NS + +L+ +  
Sbjct: 442 HSLAVKVGCQFNSFAC-NALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDL 500

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN----------------------- 432
           + +A   F    D  +  D+V+ +T + A + +  +N                       
Sbjct: 501 LDEARNTF----DNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTI 556

Query: 433 -LGSC---------RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            LG C         + +H  AIK G +S + V+ +L+  Y +CG  + S ++F+ +   +
Sbjct: 557 LLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERD 615

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +  + +I+ GY+++G+GREA+ M + M   G++P++VTF+ +L  C+H+G+V EG   F 
Sbjct: 616 IFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFK 675

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           SM   YG+    +HY+CM+D+LGR G +  AE+ +   P   D ++WS+LL +C++H N 
Sbjct: 676 SMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNA 735

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            IG+R A  L  +EP +   Y  +SN YS +G +    ++R+    + + ++ G S  ++
Sbjct: 736 EIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQI 795

Query: 663 N 663
            
Sbjct: 796 K 796



 Score =  108 bits (270), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 120/544 (22%), Positives = 230/544 (42%), Gaps = 72/544 (13%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L +   +  I D  + G +  A+++FD MP RD++ +N +IS       P  A  LYD 
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMG 159
           +    ++  A   S         G+   G  +  R +  G    N    + ++  Y++ G
Sbjct: 91  ISGGNMRTGAILLS---------GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNG 141

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LFD +P R++++WN ML  +C   +  +   ++ KM     E N +S+  M+ 
Sbjct: 142 DITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMP----ERNLVSWTVMIS 197

Query: 220 GCSIGMLLDEGK--QLHSHVIKLGWVDVNIFVANALVDFYSACGSL--IEAKKSFDFIPV 275
           G   G + + GK   +   + + G +      A+AL    SA   L  ++  +S   + +
Sbjct: 198 G--YGRIENHGKAWDIFCKMHREGLLPDQSNFASAL----SAVKGLGNLDVLESLRVLAL 251

Query: 276 D-----DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
                 DV+   +I+++Y+    + D    FF   + R   +  + +  L+         
Sbjct: 252 KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALS--------- 302

Query: 331 FGKQIHGYVTKLGFDH-GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
            G +I   +     D   S+  ++AL     +C  I+ +  +FE  P   +   N+L+T 
Sbjct: 303 HGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 390 LLHSGNIKDAVEMFGFM--------------------VDEGIG-LDEVTLSTTLKALSVS 428
            + +G + +A E+F  M                     +E +G L E+  S  L +LS  
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 429 AS--------ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            S          L +   +H  A+K G + N     +L+  Y +C ++E + QVF ++ +
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            ++V + S +    +N +  EA +  + M+ R    D V++  +++   H+    E    
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGA 538

Query: 541 FNSM 544
           F +M
Sbjct: 539 FKTM 542


>gi|356522365|ref|XP_003529817.1| PREDICTED: pentatricopeptide repeat-containing protein At1g15510,
           chloroplastic-like [Glycine max]
          Length = 882

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 174/625 (27%), Positives = 321/625 (51%), Gaps = 10/625 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            L++   N  +  FV+ G+L  A  +F  M  R++ ++N+L+ G  K     +AL LY  
Sbjct: 138 HLSLQLGNALLSMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHR 197

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  G+K    TF  VL  C        G +IH  V+  GF  ++ + + L+ +Y++ G 
Sbjct: 198 MLWVGVKPDVYTFPCVLRTCGGMPNLVRGREIHVHVIRYGFESDVDVVNALITMYVKCGD 257

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD++P R+  +WN M+  + E     E LR++  M    V+P+ ++   ++  
Sbjct: 258 VNTARLVFDKMPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITA 317

Query: 221 CSIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           C   +L D+  G+Q+H +V++  +   +  + N+L+  YS+ G + EA+  F      D+
Sbjct: 318 CE--LLGDDRLGRQIHGYVLRTEF-GRDPSIHNSLIPMYSSVGLIEEAETVFSRTECRDL 374

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW +++S Y +  +   ALE +  M+     P   +    L+  S   N+  G  +H  
Sbjct: 375 VSWTAMISGYENCLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMNLHEV 434

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             + G    S+ V ++L DMY KC  I+ ++ +F S   +++    S++  L  +    +
Sbjct: 435 AKQKGLVSYSI-VANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFE 493

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+  F  M+   +  + VTL   L A +   +   G  + +H  A+++G   +  +  ++
Sbjct: 494 ALFFFREMIRR-LKPNSVTLVCVLSACARIGALTCG--KEIHAHALRTGVSFDGFMPNAI 550

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y RCG +E + + F  +    V  +  ++ GY+  G G  A ++ + M++  + P++
Sbjct: 551 LDMYVRCGRMEYAWKQFFSVDH-EVTSWNILLTGYAERGKGAHATELFQRMVESNVSPNE 609

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ +L  C+ SGMV EG   FNSMK  Y I  + +HY+C++D+LGR+G L++A E +Q
Sbjct: 610 VTFISILCACSRSGMVAEGLEYFNSMKYKYSIMPNLKHYACVVDLLGRSGKLEEAYEFIQ 669

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
           + P   D  +W +LL SCR+H +  +G   A  + + +      Y  +SN Y++ G+++ 
Sbjct: 670 KMPMKPDPAVWGALLNSCRIHHHVELGELAAENIFQDDTTSVGYYILLSNLYADNGKWDK 729

Query: 639 SMQIRETALARKLTRDIGHSLIEVN 663
             ++R+      L  D G S +EV 
Sbjct: 730 VAEVRKMMRQNGLIVDPGCSWVEVK 754



 Score =  196 bits (499), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 146/522 (27%), Positives = 257/522 (49%), Gaps = 15/522 (2%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +A+   D M    I      + +++ +C       EG +++  V      L+L +G+ L+
Sbjct: 89  RAMSYLDSMHELRIPVEDDAYVALIRLCEWKRARKEGSRVYSYVSISMSHLSLQLGNALL 148

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
            +++R G  V A  +F  + +RNL +WN+++  + +    DE L +Y++M   GV+P+  
Sbjct: 149 SMFVRFGNLVDAWYVFGRMEKRNLFSWNVLVGGYAKAGLFDEALDLYHRMLWVGVKPDVY 208

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +F  ++R C     L  G+++H HVI+ G+ + ++ V NAL+  Y  CG +  A+  FD 
Sbjct: 209 TFPCVLRTCGGMPNLVRGREIHVHVIRYGF-ESDVDVVNALITMYVKCGDVNTARLVFDK 267

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +P  D ISWN+++S Y +  +  + L LF  M      P + +    +      G+   G
Sbjct: 268 MPNRDRISWNAMISGYFENGVCLEGLRLFGMMIKYPVDPDLMTMTSVITACELLGDDRLG 327

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           +QIHGYV +  F      + ++L  MY    +IE +  VF     R L    ++++   +
Sbjct: 328 RQIHGYVLRTEFGRDP-SIHNSLIPMYSSVGLIEEAETVFSRTECRDLVSWTAMISGYEN 386

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
               + A+E +  M  EGI  DE+T++  L A S   + ++G    LH  A + G  S  
Sbjct: 387 CLMPQKALETYKMMEAEGIMPDEITIAIVLSACSCLCNLDMGMN--LHEVAKQKGLVSYS 444

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V+ SL+D Y++C  I+ + ++F      N+V +TSI+ G   N    EAL     MI+R
Sbjct: 445 IVANSLIDMYAKCKCIDKALEIFHSTLEKNIVSWTSIILGLRINNRCFEALFFFREMIRR 504

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            L P+ VT +CVL+ C   G +  G+ +  +++++  G+  D    + ++DM  R G ++
Sbjct: 505 -LKPNSVTLVCVLSACARIGALTCGKEIHAHALRT--GVSFDGFMPNAILDMYVRCGRME 561

Query: 572 KAEELLQQTPGGGDCMMWSSLL-----RSCRVHGNEIIGRRV 608
            A +  Q      +   W+ LL     R    H  E+  R V
Sbjct: 562 YAWK--QFFSVDHEVTSWNILLTGYAERGKGAHATELFQRMV 601


>gi|15234831|ref|NP_194799.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75208664|sp|Q9SUH6.1|PP341_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At4g30700; AltName: Full=Protein DYW9
 gi|5725434|emb|CAB52443.1| putative protein [Arabidopsis thaliana]
 gi|7269971|emb|CAB79788.1| putative protein [Arabidopsis thaliana]
 gi|332660398|gb|AEE85798.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 792

 Score =  272 bits (695), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 173/608 (28%), Positives = 311/608 (51%), Gaps = 11/608 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFSSV 116
           G +  A+ +F  +   D+  +N+L+ G      P  +L ++  +  S  +K ++ST++  
Sbjct: 66  GAIYYARDIFLSVQRPDVFLFNVLMRGFSVNESPHSSLSVFAHLRKSTDLKPNSSTYAFA 125

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           +S  S       G  IH + +  G    L +GS +V +Y +      A  +FD +PE++ 
Sbjct: 126 ISAASGFRDDRAGRVIHGQAVVDGCDSELLLGSNIVKMYFKFWRVEDARKVFDRMPEKDT 185

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
             WN M+  + +     E ++++  +  E     +  +   ++   +    L  G Q+HS
Sbjct: 186 ILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTTLLDILPAVAELQELRLGMQIHS 245

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
              K G    + +V    +  YS CG +      F      D++++N+++  Y       
Sbjct: 246 LATKTGCYSHD-YVLTGFISLYSKCGKIKMGSALFREFRKPDIVAYNAMIHGYTSNGETE 304

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-DHGSVHVQSA 354
            +L LF  + L   R    + V  +     +G++     IHGY  K  F  H SV   +A
Sbjct: 305 LSLSLFKELMLSGARLRSSTLVSLVPV---SGHLMLIYAIHGYCLKSNFLSHASV--STA 359

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           LT +Y K N IES+  +F+ +P +SL   N++++    +G  +DA+ +F  M       +
Sbjct: 360 LTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPN 419

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
            VT++  L A +   + +LG  + +H     + FES+I VS +L+  Y++CG I  + ++
Sbjct: 420 PVTITCILSACAQLGALSLG--KWVHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRL 477

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F+ +   N V + ++++GY  +G G+EAL++   M+  G+ P  VTFLCVL  C+H+G+V
Sbjct: 478 FDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLV 537

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           KEG  +FNSM   YG +   +HY+CM+D+LGRAG L +A + ++         +W +LL 
Sbjct: 538 KEGDEIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLG 597

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +CR+H +  + R V+  L EL+P +   +  +SN +S    +  +  +R+TA  RKL + 
Sbjct: 598 ACRIHKDTNLARTVSEKLFELDPDNVGYHVLLSNIHSADRNYPQAATVRQTAKKRKLAKA 657

Query: 655 IGHSLIEV 662
            G++LIE+
Sbjct: 658 PGYTLIEI 665



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 112/492 (22%), Positives = 234/492 (47%), Gaps = 24/492 (4%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q H +++  GF  ++ + + L      +G    A D+F  +   ++  +N+++R F    
Sbjct: 38  QTHAQIILHGFRNDISLLTKLTQRLSDLGAIYYARDIFLSVQRPDVFLFNVLMRGFSVNE 97

Query: 191 RPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDE-GKQLHSHVIKLGWVDVNIF 248
            P   L ++  + K+  ++PN  ++ + +   S G   D  G+ +H   +  G  D  + 
Sbjct: 98  SPHSSLSVFAHLRKSTDLKPNSSTYAFAISAAS-GFRDDRAGRVIHGQAVVDG-CDSELL 155

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM--QL 306
           + + +V  Y     + +A+K FD +P  D I WN+++S Y   ++  +++++F  +  + 
Sbjct: 156 LGSNIVKMYFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINES 215

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG-FDHGSVHVQSALTDMYGKCNVI 365
           C  R    + ++ L   +    +  G QIH   TK G + H   +V +    +Y KC  I
Sbjct: 216 C-TRLDTTTLLDILPAVAELQELRLGMQIHSLATKTGCYSHD--YVLTGFISLYSKCGKI 272

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           +   A+F       +   N+++     +G  + ++ +F  ++  G  L     S+TL +L
Sbjct: 273 KMGSALFREFRKPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLR----SSTLVSL 328

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
            V  S +L     +H   +KS F S+ +VS +L   YS+   IE + ++F++ P  ++  
Sbjct: 329 -VPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESPEKSLPS 387

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + ++++GY++NG+  +A+ +   M +    P+ VT  C+L+ C   G +  G+ V + ++
Sbjct: 388 WNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVR 447

Query: 546 SVYGIDADRQHY--SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           S    D +   Y  + +I M  + G + +A  L        + + W++++    +HG   
Sbjct: 448 ST---DFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNE-VTWNTMISGYGLHGQ-- 501

Query: 604 IGRRVANILMEL 615
            G+   NI  E+
Sbjct: 502 -GQEALNIFYEM 512



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 98/426 (23%), Positives = 191/426 (44%), Gaps = 7/426 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESAST 112
           + K   +  A+K+FD MP +D + +N +ISG  K     +++ ++ ++++    +   +T
Sbjct: 164 YFKFWRVEDARKVFDRMPEKDTILWNTMISGYRKNEMYVESIQVFRDLINESCTRLDTTT 223

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
              +L   +       G+QIH      G   + Y+ +  + LY + G       LF E  
Sbjct: 224 LLDILPAVAELQELRLGMQIHSLATKTGCYSHDYVLTGFISLYSKCGKIKMGSALFREFR 283

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           + ++  +N M+  +      +  L ++ ++   G      +   +V      ML+     
Sbjct: 284 KPDIVAYNAMIHGYTSNGETELSLSLFKELMLSGARLRSSTLVSLVPVSGHLMLI---YA 340

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H + +K  ++  +  V+ AL   YS    +  A+K FD  P   + SWN+++S Y    
Sbjct: 341 IHGYCLKSNFLS-HASVSTALTTVYSKLNEIESARKLFDESPEKSLPSWNAMISGYTQNG 399

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L  DA+ LF  MQ     P+  +    L+  ++ G +  GK +H  V    F+  S++V 
Sbjct: 400 LTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKWVHDLVRSTDFE-SSIYVS 458

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL  MY KC  I  +  +F+    ++    N++++     G  ++A+ +F  M++ GI 
Sbjct: 459 TALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQGQEALNIFYEMLNSGIT 518

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
              VT    L A S +     G   + +    + GFE ++     ++D   R GH++ + 
Sbjct: 519 PTPVTFLCVLYACSHAGLVKEGD-EIFNSMIHRYGFEPSVKHYACMVDILGRAGHLQRAL 577

Query: 473 QVFEKI 478
           Q  E +
Sbjct: 578 QFIEAM 583



 Score =  105 bits (261), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 75/297 (25%), Positives = 142/297 (47%), Gaps = 9/297 (3%)

Query: 17  APTCTSIVPLSSSLLL----DSYCQPNPQLNIYSSNRTIDD-FVKSGHLNSAKKLFDEMP 71
           + T  S+VP+S  L+L      YC  +  L+  S +  +   + K   + SA+KLFDE P
Sbjct: 322 SSTLVSLVPVSGHLMLIYAIHGYCLKSNFLSHASVSTALTTVYSKLNEIESARKLFDESP 381

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            + + ++N +ISG  +    + A+ L+ EM       +  T + +LS C+  G  + G  
Sbjct: 382 EKSLPSWNAMISGYTQNGLTEDAISLFREMQKSEFSPNPVTITCILSACAQLGALSLGKW 441

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H  V S  F  ++Y+ + L+ +Y + G    A  LFD + ++N  TWN M+  +    +
Sbjct: 442 VHDLVRSTDFESSIYVSTALIGMYAKCGSIAEARRLFDLMTKKNEVTWNTMISGYGLHGQ 501

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
             E L ++ +M   G+ P  ++F  ++  CS   L+ EG ++ + +I     + ++    
Sbjct: 502 GQEALNIFYEMLNSGITPTPVTFLCVLYACSHAGLVKEGDEIFNSMIHRYGFEPSVKHYA 561

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVS---IYADYDLIFDALELFFRM 304
            +VD     G L  A +  + + ++   S W +++    I+ D +L     E  F +
Sbjct: 562 CMVDILGRAGHLQRALQFIEAMSIEPGSSVWETLLGACRIHKDTNLARTVSEKLFEL 618


>gi|326490736|dbj|BAJ90035.1| predicted protein [Hordeum vulgare subsp. vulgare]
 gi|326511421|dbj|BAJ87724.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 801

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 173/646 (26%), Positives = 330/646 (51%), Gaps = 24/646 (3%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L D+    N  LN+Y+S        + G ++  ++LFD MP +++V++N L     K   
Sbjct: 133 LPDTAVLRNSLLNLYASCARH----RRGGVDVVRRLFDAMPKKNVVSWNTLFGWYVKTGR 188

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG----FYTEGIQIHCRVLSLGFGLNLY 146
           P +AL ++  M+  G++ +  +F +V     +      F   G+ I   V  +    +L+
Sbjct: 189 PDEALEMFARMLEDGVRPTPVSFVNVFPAAGSGDPSWPFLLYGLLIKHGVEYVN---DLF 245

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAE 205
           + S  + ++  +     A  +FD   ++N+  WN M+  + +  +  + + ++ + + ++
Sbjct: 246 VVSSAIGMFSEISDVQSARMVFDRAGKKNIEVWNTMITGYVQNGQFSQAMDLFIQILGSK 305

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            V  + ++F   V   S    +  G+QLH +++K     + + + NALV  YS CG++  
Sbjct: 306 EVPSDVVTFLSAVTAASQSQDVRLGQQLHGYLMKGMHSTLPVILGNALVVMYSRCGNVQT 365

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A + FD +P  D++SWN++++ +   D   + L L ++MQ     P   +    L+ AS 
Sbjct: 366 AFELFDRLPEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSGFIPDTVTLTAVLSAASN 425

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES-APGRSLECCN 384
           TG++  GKQ HGY+ + G +     ++S L DMY K   I+ +  VF+     R     N
Sbjct: 426 TGDLQIGKQSHGYLIRHGIE--GEGLESYLIDMYSKSGRIDMAQRVFDGYGNDRDEVTWN 483

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           +++     SG  + AV  F  M++ G+    VTL++ L A        + + + +H  A+
Sbjct: 484 AMIAGYTQSGQPEQAVLQFRAMIEAGVEPTSVTLASVLPACD-PVGGGVCAGKQIHSFAL 542

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           +   ++N+ V  +L+D YS+CG I  +  VF  +   + V +T++++G  ++G G  AL 
Sbjct: 543 RHSLDTNVFVGTALVDMYSKCGEISAAENVFGGMTEKSTVTYTTMISGLGQHGFGERALS 602

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           +   M  +GL PD VTFL  ++ CN+SG+V EG  ++ SM++ +G+ A  QH+ C++D+L
Sbjct: 603 LFYSMRDKGLKPDAVTFLAAISACNYSGLVDEGLSLYRSMET-FGLAATPQHHCCIVDLL 661

Query: 565 GRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIG----RRVANILMELEPVD 619
            +AG +D+A + ++     G+ + +W SLL SC+  G   +      +V NI  +     
Sbjct: 662 AKAGRVDEAYDFVESLGEDGNFIAIWGSLLASCKAQGKMELAAWATEKVLNIEKQYGHAG 721

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           + V   +S  ++  G +  +  +R+    R L ++ G + I+V S 
Sbjct: 722 YNVL--LSQLFAAEGNWSSADSLRKEMRLRGLRKEAGSTWIKVQSA 765



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 112/442 (25%), Positives = 226/442 (51%), Gaps = 22/442 (4%)

Query: 167 LFDELPERNLATW--NLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCY--MVRGC 221
           L D LP R   T   N++L A+   + PD  LR+Y  +  A    P    + Y   +  C
Sbjct: 52  LLDALP-RPPPTLLCNVLLIAYVAGALPDHALRLYALLNHAARPAPRSDHYTYSCALTAC 110

Query: 222 SIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSAC-----GSLIEAKKSFDFIPV 275
           +    L  G+ +H+H+++    +     + N+L++ Y++C     G +   ++ FD +P 
Sbjct: 111 ARSRRLRLGRSVHAHLLRRARSLPDTAVLRNSLLNLYASCARHRRGGVDVVRRLFDAMPK 170

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +V+SWN++   Y       +ALE+F RM     RP+  SFV     A+ +G+  +   +
Sbjct: 171 KNVVSWNTLFGWYVKTGRPDEALEMFARMLEDGVRPTPVSFVNVFP-AAGSGDPSWPFLL 229

Query: 336 HGYVTKLGFDH-GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +G + K G ++   + V S+   M+ + + ++S+  VF+ A  +++E  N+++T  + +G
Sbjct: 230 YGLLIKHGVEYVNDLFVVSSAIGMFSEISDVQSARMVFDRAGKKNIEVWNTMITGYVQNG 289

Query: 395 NIKDAVEMF-GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
               A+++F   +  + +  D VT  + + A S S    LG  + LH   +K G  S + 
Sbjct: 290 QFSQAMDLFIQILGSKEVPSDVVTFLSAVTAASQSQDVRLG--QQLHGYLMK-GMHSTLP 346

Query: 454 V--SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           V    +L+  YSRCG+++ + ++F+++P  ++V + +++  + +N    E L ++  M +
Sbjct: 347 VILGNALVVMYSRCGNVQTAFELFDRLPEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQK 406

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G IPD VT   VL+  +++G ++ G+     +   +GI+ +    S +IDM  ++G +D
Sbjct: 407 SGFIPDTVTLTAVLSAASNTGDLQIGKQSHGYLIR-HGIEGEGLE-SYLIDMYSKSGRID 464

Query: 572 KAEELLQQTPGGGDCMMWSSLL 593
            A+ +        D + W++++
Sbjct: 465 MAQRVFDGYGNDRDEVTWNAMI 486


>gi|297720883|ref|NP_001172804.1| Os02g0151000 [Oryza sativa Japonica Group]
 gi|51535971|dbj|BAD38052.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|218190072|gb|EEC72499.1| hypothetical protein OsI_05871 [Oryza sativa Indica Group]
 gi|255670608|dbj|BAH91533.1| Os02g0151000 [Oryza sativa Japonica Group]
          Length = 922

 Score =  271 bits (694), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 177/661 (26%), Positives = 321/661 (48%), Gaps = 55/661 (8%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++ S N  +  +  S  +  A+ LF++MP R++V++ ++ISG G+  +  +A  ++ 
Sbjct: 154 PSRDVSSWNSMLTGYCHSLQMVDARNLFEKMPERNLVSWTVMISGYGRIENHGKAWDIFC 213

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   G+    S F+S LS     G       +    L  GF  ++ IG+ ++++Y R  
Sbjct: 214 KMHREGLLPDQSNFASALSAVKGLGNLDVLESLRVLALKTGFERDVVIGTAILNVYSRDT 273

Query: 160 PSV-RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
             +  A+  F+ + ERN  TW+ M+ A     R D  + +Y +   + +         ++
Sbjct: 274 SVLDTAIKFFESMIERNEYTWSTMIAALSHGGRIDAAIAVYERDPVKSIACR----TALI 329

Query: 219 RGCSIGMLLDEGKQLHSHV---IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            G +    +D+ + L   +   I + W        NAL+  Y   G + EAK+ FD +P 
Sbjct: 330 TGLAQCGRIDDARILFEQIPEPIVVSW--------NALITGYMQNGMVNEAKELFDKMPF 381

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            + ISW  +++ YA      +AL L   +      PS+ S        S    +  G Q+
Sbjct: 382 RNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSLTSIFFACSNIVALETGTQV 441

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H    K+G    S    +AL  MYGKC  +E +  VF     + +   NS + +L+ +  
Sbjct: 442 HSLAVKVGCQFNSFAC-NALITMYGKCRNMEYARQVFSRMVTKDIVSWNSFLAALVQNDL 500

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN----------------------- 432
           + +A   F    D  +  D+V+ +T + A + +  +N                       
Sbjct: 501 LDEARNTF----DNMLSRDDVSWTTIISAYAHAEQSNEAMGAFKTMFCEHELPNSPILTI 556

Query: 433 -LGSC---------RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            LG C         + +H  AIK G +S + V+ +L+  Y +CG  + S ++F+ +   +
Sbjct: 557 LLGVCGSLGASKIGQQIHTVAIKLGMDSELIVANALISMYFKCGCAD-SRRIFDLMEERD 615

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           +  + +I+ GY+++G+GREA+ M + M   G++P++VTF+ +L  C+H+G+V EG   F 
Sbjct: 616 IFTWNTIITGYAQHGLGREAIKMYQHMESAGVLPNEVTFVGLLNACSHAGLVDEGWKFFK 675

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           SM   YG+    +HY+CM+D+LGR G +  AE+ +   P   D ++WS+LL +C++H N 
Sbjct: 676 SMSQDYGLTPLPEHYACMVDLLGRTGDVQGAEQFIYDMPIEPDTVIWSALLGACKIHKNA 735

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            IG+R A  L  +EP +   Y  +SN YS +G +    ++R+    + + ++ G S  ++
Sbjct: 736 EIGKRAAEKLFRIEPSNAGNYVMLSNIYSSLGMWGEVAEVRKIMKQQGVIKEPGCSWTQI 795

Query: 663 N 663
            
Sbjct: 796 K 796



 Score =  108 bits (269), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 120/544 (22%), Positives = 230/544 (42%), Gaps = 72/544 (13%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L +   +  I D  + G +  A+++FD MP RD++ +N +IS       P  A  LYD 
Sbjct: 31  ELEVSGCSARIRDLGRLGRVGEAREVFDAMPRRDIIAWNSMISAYCHNGMPDAARDLYDA 90

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMG 159
           +    ++  A   S         G+   G  +  R +  G    N    + ++  Y++ G
Sbjct: 91  ISGGNMRTGAILLS---------GYGRLGRVLEARRVFDGMLERNTVAWNAMISCYVQNG 141

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LFD +P R++++WN ML  +C   +  +   ++ KM     E N +S+  M+ 
Sbjct: 142 DITMARRLFDAMPSRDVSSWNSMLTGYCHSLQMVDARNLFEKMP----ERNLVSWTVMIS 197

Query: 220 GCSIGMLLDEGK--QLHSHVIKLGWVDVNIFVANALVDFYSACGSL--IEAKKSFDFIPV 275
           G   G + + GK   +   + + G +      A+AL    SA   L  ++  +S   + +
Sbjct: 198 G--YGRIENHGKAWDIFCKMHREGLLPDQSNFASAL----SAVKGLGNLDVLESLRVLAL 251

Query: 276 D-----DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
                 DV+   +I+++Y+    + D    FF   + R   +  + +  L+         
Sbjct: 252 KTGFERDVVIGTAILNVYSRDTSVLDTAIKFFESMIERNEYTWSTMIAALS--------- 302

Query: 331 FGKQIHGYVTKLGFDH-GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
            G +I   +     D   S+  ++AL     +C  I+ +  +FE  P   +   N+L+T 
Sbjct: 303 HGGRIDAAIAVYERDPVKSIACRTALITGLAQCGRIDDARILFEQIPEPIVVSWNALITG 362

Query: 390 LLHSGNIKDAVEMFGFM--------------------VDEGIG-LDEVTLSTTLKALSVS 428
            + +G + +A E+F  M                     +E +G L E+  S  L +LS  
Sbjct: 363 YMQNGMVNEAKELFDKMPFRNTISWAGMIAGYAQNGRSEEALGLLQELHRSGMLPSLSSL 422

Query: 429 AS--------ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            S          L +   +H  A+K G + N     +L+  Y +C ++E + QVF ++ +
Sbjct: 423 TSIFFACSNIVALETGTQVHSLAVKVGCQFNSFACNALITMYGKCRNMEYARQVFSRMVT 482

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            ++V + S +    +N +  EA +  + M+ R    D V++  +++   H+    E    
Sbjct: 483 KDIVSWNSFLAALVQNDLLDEARNTFDNMLSR----DDVSWTTIISAYAHAEQSNEAMGA 538

Query: 541 FNSM 544
           F +M
Sbjct: 539 FKTM 542


>gi|334184142|ref|NP_178563.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|334302883|sp|Q9SJ73.3|PP148_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g04860
 gi|330250783|gb|AEC05877.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 692

 Score =  271 bits (694), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 176/602 (29%), Positives = 311/602 (51%), Gaps = 13/602 (2%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           +Y     ++ ++K G + SA+ LFDEMP RD V +N LI G  +  +   A  L+  M+ 
Sbjct: 85  VYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNGYECDAWKLFIVMLQ 144

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G   SA+T  ++L  C   GF ++G  +H      G  L+  + + L+  Y +      
Sbjct: 145 QGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDSQVKNALISFYSKCAELGS 204

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  LF E+ +++  +WN M+ A+ +    +E + ++  M  + VE + ++   ++     
Sbjct: 205 AEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKNVEISPVTIINLLSAHV- 263

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                  + LH  V+K G V+ +I V  +LV  YS CG L+ A++ +     D ++   S
Sbjct: 264 -----SHEPLHCLVVKCGMVN-DISVVTSLVCAYSRCGCLVSAERLYASAKQDSIVGLTS 317

Query: 284 IVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           IVS YA+   +  A+  F +  QLC K  ++ + V  L+   ++ ++  G  +HGY  K 
Sbjct: 318 IVSCYAEKGDMDIAVVYFSKTRQLCMKIDAV-ALVGILHGCKKSSHIDIGMSLHGYAIKS 376

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G    ++ V   +T MY K + +E+ + +FE      L   NS+++  + SG    A E+
Sbjct: 377 GLCTKTLVVNGLIT-MYSKFDDVETVLFLFEQLQETPLISWNSVISGCVQSGRASTAFEV 435

Query: 403 F-GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           F   M+  G+  D +T+++ L   S     NLG  + LH   +++ FE+   V  +L+D 
Sbjct: 436 FHQMMLTGGLLPDAITIASLLAGCSQLCCLNLG--KELHGYTLRNNFENENFVCTALIDM 493

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y++CG+   +  VF+ I +P    + S+++GYS +G+   AL     M ++GL PD++TF
Sbjct: 494 YAKCGNEVQAESVFKSIKAPCTATWNSMISGYSLSGLQHRALSCYLEMREKGLKPDEITF 553

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L VL+ CNH G V EG++ F +M   +GI    QHY+ M+ +LGRA +  +A  L+ +  
Sbjct: 554 LGVLSACNHGGFVDEGKICFRAMIKEFGISPTLQHYALMVGLLGRACLFTEALYLIWKMD 613

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D  +W +LL +C +H    +G  VA  +  L+  +  +Y  +SN Y+    ++  ++
Sbjct: 614 IKPDSAVWGALLSACIIHRELEVGEYVARKMFMLDYKNGGLYVLMSNLYATEAMWDDVVR 673

Query: 642 IR 643
           +R
Sbjct: 674 VR 675



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 119/515 (23%), Positives = 237/515 (46%), Gaps = 26/515 (5%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA--GFYTEGI 130
           RD+  ++ L+  C         + ++ +++   +  +  T S  L   + +   F  +  
Sbjct: 11  RDLSYFHSLLKSCIHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVE 70

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+   +   G    +Y+ + L++LY++ G    A  LFDE+PER+   WN ++  +    
Sbjct: 71  QVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNG 130

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              +  +++  M  +G  P+  +   ++  C     + +G+ +H    K G ++++  V 
Sbjct: 131 YECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSG-LELDSQVK 189

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+ FYS C  L  A+  F  +     +SWN+++  Y+   L  +A+ +F  M    K 
Sbjct: 190 NALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNM--FEKN 247

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
             I S V  +N  S   +    + +H  V K G  +  + V ++L   Y +C  + S+  
Sbjct: 248 VEI-SPVTIINLLSAHVS---HEPLHCLVVKCGMVN-DISVVTSLVCAYSRCGCLVSAER 302

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           ++ SA   S+    S+++     G++  AV  F       + +D V L   L     S+ 
Sbjct: 303 LYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKKSSH 362

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
            ++G    LH  AIKSG  +   V   L+  YS+   +E    +FE++    ++ + S++
Sbjct: 363 IDIGMS--LHGYAIKSGLCTKTLVVNGLITMYSKFDDVETVLFLFEQLQETPLISWNSVI 420

Query: 491 NGYSRNGMGREALDML-EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           +G  ++G    A ++  ++M+  GL+PD +T   +LAGC+    +  G       K ++G
Sbjct: 421 SGCVQSGRASTAFEVFHQMMLTGGLLPDAITIASLLAGCSQLCCLNLG-------KELHG 473

Query: 550 I----DADRQHYSC--MIDMLGRAGILDKAEELLQ 578
                + + +++ C  +IDM  + G   +AE + +
Sbjct: 474 YTLRNNFENENFVCTALIDMYAKCGNEVQAESVFK 508



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/390 (26%), Positives = 181/390 (46%), Gaps = 26/390 (6%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+ +H+ K G +D  ++V  +L++ Y   G +  A+  FD +P  D + WN+++  Y+ 
Sbjct: 70  EQVQTHLTKSG-LDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSR 128

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                DA +LF  M      PS  + V  L F  + G V  G+ +HG   K G +  S  
Sbjct: 129 NGYECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSVHGVAAKSGLELDS-Q 187

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V++AL   Y KC  + S+  +F     +S    N+++ +   SG  ++A+ +F  M ++ 
Sbjct: 188 VKNALISFYSKCAELGSAEVLFREMKDKSTVSWNTMIGAYSQSGLQEEAITVFKNMFEKN 247

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           + +  VT+   L A  VS          LHC  +K G  ++I+V  SL+ AYSRCG +  
Sbjct: 248 VEISPVTIINLLSA-HVSHEP-------LHCLVVKCGMVNDISVVTSLVCAYSRCGCLVS 299

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           + +++      ++V  TSI++ Y+  G    A+       Q  +  D V  + +L GC  
Sbjct: 300 AERLYASAKQDSIVGLTSIVSCYAEKGDMDIAVVYFSKTRQLCMKIDAVALVGILHGCKK 359

Query: 531 SGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAE------ELLQQTPGG 583
           S  +  G  +   ++KS  G+       + +I M  +    D  E      E LQ+TP  
Sbjct: 360 SSHIDIGMSLHGYAIKS--GLCTKTLVVNGLITMYSK---FDDVETVLFLFEQLQETP-- 412

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
              + W+S++  C   G       V + +M
Sbjct: 413 --LISWNSVISGCVQSGRASTAFEVFHQMM 440



 Score = 75.5 bits (184), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 50/202 (24%), Positives = 99/202 (49%), Gaps = 1/202 (0%)

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           R L   +SL+ S +H       + +F  ++   +  +  T+S  L+A + S ++      
Sbjct: 11  RDLSYFHSLLKSCIHGEISSSPITIFRDLLRSSLTPNHFTMSIFLQATTTSFNSFKLQVE 70

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +     KSG +  + V  SL++ Y + G +  +  +F+++P  + V + +++ GYSRNG
Sbjct: 71  QVQTHLTKSGLDRFVYVKTSLLNLYLKKGCVTSAQMLFDEMPERDTVVWNALICGYSRNG 130

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
              +A  +  VM+Q+G  P   T + +L  C   G V +G+ V + + +  G++ D Q  
Sbjct: 131 YECDAWKLFIVMLQQGFSPSATTLVNLLPFCGQCGFVSQGRSV-HGVAAKSGLELDSQVK 189

Query: 558 SCMIDMLGRAGILDKAEELLQQ 579
           + +I    +   L  AE L ++
Sbjct: 190 NALISFYSKCAELGSAEVLFRE 211


>gi|302816964|ref|XP_002990159.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
 gi|300142014|gb|EFJ08719.1| hypothetical protein SELMODRAFT_131170 [Selaginella moellendorffii]
          Length = 849

 Score =  271 bits (694), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 170/622 (27%), Positives = 323/622 (51%), Gaps = 13/622 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ++ + K G +  A+ +F  +   ++ ++ +L++   +  H K  L L  +M   G+ 
Sbjct: 120 NCVVEAYGKCGCVKDARLVFSSIRHPNVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVW 179

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALD 166
            +A T ++V+   S  G + E  +IH R  +      ++ + + L+D+Y + G    A  
Sbjct: 180 PNAVTLATVIGAVSELGNWDEARKIHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEV 239

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD+   ++LA  N M+ A+ +L    + +  +N+++  G++PN +++  + R C+   +
Sbjct: 240 VFDQARNKDLACCNAMISAYIQLGYTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGV 299

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
             + +  H   I L  +  ++ V  ALV  YS CGSL +A++ FD +P  +V++WN +++
Sbjct: 300 YSDARVAHMCFI-LSKLRPDVVVNTALVSMYSRCGSLEDARRVFDRMPGKNVVTWNVMIA 358

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA      +AL+L+  M+     P   +FV  L   S   ++  G+ IH +V   G+D 
Sbjct: 359 GYAQEGYTDEALQLYVSMEAAGVEPDEITFVNVLESCSLAEHLAAGRDIHKHVVDAGYD- 417

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESA--PGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
            S+ V SAL  MY  C  +  +V VF        S+    +++T+L  +G  + A+ +F 
Sbjct: 418 SSLTVLSALITMYSACGSLGDAVDVFHKGVTTHSSVISWTAMLTALTRNGEGRSALALFR 477

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC---AIKSGFESNIAVSCSLMDA 461
            M  EG+  + VT  +T+ A S     ++G+    H      I +G   ++ +  SL++ 
Sbjct: 478 KMDLEGVRANVVTFVSTIDACS-----SIGALVEGHAIFERVIVTGHLIDVVLGTSLINL 532

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +CG ++ + +VF  +   N+V + +I+   S+NG    + ++L+ M   G  P+++T 
Sbjct: 533 YGKCGRLDYALEVFHYLSFKNIVTWNTILAASSQNGEETLSDELLQEMDLDGAQPNEMTL 592

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L +L GC+H+G+V +    F SM   + +    +HY C++D+LGR+G L++ E  +   P
Sbjct: 593 LNMLFGCSHNGLVAKAVSYFRSMVYGHCLVPTSEHYGCLVDLLGRSGQLEEVEAFISSKP 652

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D ++W SLL SC +H +   G R A  ++ L+P + + Y  +SN ++ IG  +    
Sbjct: 653 FSLDSVLWMSLLGSCVIHSDVERGLRAARRVLGLDPKNASPYVLLSNMFAAIGMLDAVKS 712

Query: 642 IRETALARKLTRDIGHSLIEVN 663
           + + A  R + ++   S IEVN
Sbjct: 713 LAKLAGERAMKKEQSRSYIEVN 734



 Score = 75.9 bits (185), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 57/276 (20%), Positives = 129/276 (46%), Gaps = 5/276 (1%)

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
           +++   ++G+V   K I  +++      G   + + + + YGKC  ++ +  VF S    
Sbjct: 86  YVSLLKQSGDVTALKTIQAHISHSKRFAGDRLLLNCVVEAYGKCGCVKDARLVFSSIRHP 145

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           ++     L+ +   +G+ K  +E+   M   G+  + VTL+T + A  VS   N    R 
Sbjct: 146 NVYSWTILLAAYAQNGHHKTVLELLRQMDLLGVWPNAVTLATVIGA--VSELGNWDEARK 203

Query: 439 LHC-CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
           +H   A       ++ +  +L+D Y++CG I  +  VF++  + ++ C  ++++ Y + G
Sbjct: 204 IHARAAATCQLTYDVVLVTALIDMYAKCGDIFHAEVVFDQARNKDLACCNAMISAYIQLG 263

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
              +A+     +   GL P++VT+  +   C  +G+  + ++       +  +  D    
Sbjct: 264 YTVDAVSTFNRIQPSGLQPNQVTYALLFRACATNGVYSDARVAHMCF-ILSKLRPDVVVN 322

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           + ++ M  R G L+ A  +  + P G + + W+ ++
Sbjct: 323 TALVSMYSRCGSLEDARRVFDRMP-GKNVVTWNVMI 357


>gi|225464746|ref|XP_002265138.1| PREDICTED: pentatricopeptide repeat-containing protein At3g22150,
           chloroplastic [Vitis vinifera]
          Length = 825

 Score =  271 bits (693), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 179/636 (28%), Positives = 327/636 (51%), Gaps = 17/636 (2%)

Query: 39  NPQLNIYSSNRTIDDFVKSGH----LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           N  LN+YS+  T   ++ + +     +  +++FD M  R++V +N +IS   K     +A
Sbjct: 143 NSLLNMYSTCLTEVPYLGTAYDFNNCDLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEA 202

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG--FGLNLYIGSPLV 152
             ++  M+  GI+ +  +F +V         Y     ++  V+ LG  F  + ++ S  +
Sbjct: 203 FKMFRTMMRMGIRPTPVSFVNVFPAVWRMSDYDNANVLYGLVVKLGSDFVDDFFVVSSAI 262

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNG 211
            +Y  +G    A ++FD   ERN   WN M+  + + + P E + ++ + M++E    + 
Sbjct: 263 FMYAELGCVDFAREIFDCCLERNTEVWNTMIGGYVQNNCPIEAIDLFVQVMESEQFVLDD 322

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++F   +   S    L+ G+QLH++++K   + + + + NA++  YS CGS+  + K F 
Sbjct: 323 VTFLSALTAISQLQWLELGRQLHAYILKSSTI-LQVVILNAIIVMYSRCGSIGTSFKVFS 381

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +   DV++WN++VS +    L  + L L F MQ         +    L+ AS   +   
Sbjct: 382 NMLERDVVTWNTMVSAFVQNGLDDEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEI 441

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE--SAPGRSLECCNSLMTS 389
           GKQ H Y+ + G     +   S L DMY K  +I ++  +FE  S   R     N+++  
Sbjct: 442 GKQAHAYLIRHGIQFEGM--DSYLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAG 499

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
              +G  ++   +F  M+++ +  + VTL++ L A +   +  LG  + +H  AI+    
Sbjct: 500 YTQNGLSEEGFAVFRKMIEQNVRPNAVTLASILPACNPMGTIGLG--KQIHGFAIRCFLN 557

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            N+ V  +L+D YS+ G I  +  VF +    N V +T++++ Y ++GMG  AL +   M
Sbjct: 558 RNVFVGTALLDMYSKSGAITYAENVFAETLEKNSVTYTTMISSYGQHGMGERALSLFHAM 617

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
           +  G+ PD VTF+ +L+ C+++G+V EG  +F SM+  Y I    +HY C+ DMLGR G 
Sbjct: 618 LGSGIKPDSVTFVAILSACSYAGLVDEGLRIFQSMEREYKIQPSAEHYCCVADMLGRVGR 677

Query: 570 LDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVD--FAVYSQV 626
           + +A E ++     G+   +W SLL +CR+HG   +G+ VAN L+E+E        +  +
Sbjct: 678 VVEAYEFVKGLGEEGNTFGIWGSLLGACRIHGEFELGKVVANKLLEMEKGSSLTGYHVLL 737

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           SN Y+  G ++   ++R+    + L ++ G S +EV
Sbjct: 738 SNIYAAEGNWDNVDRVRKEMRQKGLMKEAGCSWVEV 773



 Score =  169 bits (428), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 142/572 (24%), Positives = 261/572 (45%), Gaps = 42/572 (7%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFS 114
           + GH + A  LFD +P    V +N +I G      P  AL  Y  M  S   K  + TFS
Sbjct: 49  RQGHPHQALHLFDSIPRPTTVLWNTIIIGFICNNMPIDALLFYARMRASPSPKFDSYTFS 108

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD-------- 166
           S L  C+ A     G  +HC VL   FG +  + + L+++Y      V  L         
Sbjct: 109 STLKACAQARSLKLGKALHCHVLRSHFGSSRIVYNSLLNMYSTCLTEVPYLGTAYDFNNC 168

Query: 167 -----LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
                +FD + +RN+  WN M+  + +  R  E  +M+  M   G+ P  +SF  +    
Sbjct: 169 DLVRRVFDTMRKRNVVAWNTMISWYVKTERLIEAFKMFRTMMRMGIRPTPVSFVNVFPAV 228

Query: 222 SIGMLLDEGKQLHSHVIKLG--WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                 D    L+  V+KLG  +VD + FV ++ +  Y+  G +  A++ FD     +  
Sbjct: 229 WRMSDYDNANVLYGLVVKLGSDFVD-DFFVVSSAIFMYAELGCVDFAREIFDCCLERNTE 287

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF---GKQIH 336
            WN+++  Y   +   +A++LF  +Q+      +   V FL+  +    + +   G+Q+H
Sbjct: 288 VWNTMIGGYVQNNCPIEAIDLF--VQVMESEQFVLDDVTFLSALTAISQLQWLELGRQLH 345

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            Y+ K       V + +A+  MY +C  I +S  VF +   R +   N+++++ + +G  
Sbjct: 346 AYILKSS-TILQVVILNAIIVMYSRCGSIGTSFKVFSNMLERDVVTWNTMVSAFVQNGLD 404

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
            + + +   M  +G  +D VTL+  L   S   S  +G  +  H   I+ G +    +  
Sbjct: 405 DEGLMLVFAMQKQGFMVDSVTLTALLSLASNLRSQEIG--KQAHAYLIRHGIQFE-GMDS 461

Query: 457 SLMDAYSRCGHIELSHQVFEKIP--SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
            L+D Y++ G I  + Q+FEK      +   + +++ GY++NG+  E   +   MI++ +
Sbjct: 462 YLIDMYAKSGLITTAQQLFEKNSDYDRDEATWNAMIAGYTQNGLSEEGFAVFRKMIEQNV 521

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA----DRQHY--SCMIDMLGRAG 568
            P+ VT   +L  CN  G +  G       K ++G       +R  +  + ++DM  ++G
Sbjct: 522 RPNAVTLASILPACNPMGTIGLG-------KQIHGFAIRCFLNRNVFVGTALLDMYSKSG 574

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            +  AE +  +T    + + +++++ S   HG
Sbjct: 575 AITYAENVFAETL-EKNSVTYTTMISSYGQHG 605


>gi|125527050|gb|EAY75164.1| hypothetical protein OsI_03056 [Oryza sativa Indica Group]
          Length = 669

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 163/604 (26%), Positives = 315/604 (52%), Gaps = 9/604 (1%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+K+FD M   +   +N +I G      P+ AL ++ EM   G+     T ++V+S  + 
Sbjct: 71  ARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAA 130

Query: 123 A---GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
                + + G  IH  V  +GF  ++++ S LV+ Y        A  +F+E+ ER++ +W
Sbjct: 131 FAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSW 190

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+ A  +    D+VL+M ++M+AEG+ PN ++   ++  C     +DEG+ +++ V K
Sbjct: 191 TSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK 250

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G ++ ++ + NAL+  Y+ CG L +A ++F  +P     SWN+++  +       +AL 
Sbjct: 251 FG-IEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  M L    P   + V  L+  ++ G +  G  +H Y+   G    ++ + ++L +MY
Sbjct: 310 IFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNI-LTNSLINMY 368

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  + ++  VF++   + +     ++   +       A  +F  M    +   E+ L 
Sbjct: 369 AKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALV 428

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A S   + + G  R +H    +     ++ +  +L+D Y++CG I+ + ++F K+ 
Sbjct: 429 SLLSACSQLGALDKG--REIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQ 486

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
               + + +++ G + NG G+EA+++ + M++ +   PD +T   VL  C H GMV EG 
Sbjct: 487 HKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGL 546

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F  M S+ G+  D +HY C++D+LGRAG+LD+A   +++ P   + ++W SLL +CRV
Sbjct: 547 RYFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRV 605

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H    +G+ +   ++ + P D  V+  VSN ++E  +++    +R    +R + +  GHS
Sbjct: 606 HHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHS 665

Query: 659 LIEV 662
            ++V
Sbjct: 666 SVQV 669



 Score =  174 bits (441), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 216/452 (47%), Gaps = 15/452 (3%)

Query: 50  TIDDFVKSGHLN---------SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           T D FV SG +N          A K+F+EM  RD+V++  +IS C +  H  + L +  E
Sbjct: 153 TSDVFVMSGLVNYYGAFRSVKEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSE 212

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M + GI  +  T  S+LS C       EG  ++ +V   G   ++ I + L+ +Y + G 
Sbjct: 213 MQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL+ F  +P R   +WN ++  F +     E LR++ +M   GV P+G++   ++  
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L +G  +HS++   G    NI   N+L++ Y+ CG +  A++ F  +   DV+S
Sbjct: 333 CAQLGELRKGMHVHSYIKDNGICCDNILT-NSLINMYAKCGDMAAAERVFQTMTKKDVVS 391

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W  +V  Y        A  LF  M++        + V  L+  S+ G +  G++IH Y+ 
Sbjct: 392 WTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIE 451

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           ++      + ++SAL DMY KC  I+++  +F     +     N+++  L  +G  K+AV
Sbjct: 452 EMNVAK-DLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAV 510

Query: 401 EMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           E+F  M++ +    D +TL   L A +     + G  R  +  +            C ++
Sbjct: 511 ELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEG-LRYFYLMSSLGVVPDTEHYGC-IV 568

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
           D   R G ++ +    +K+P  PN V + S++
Sbjct: 569 DLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLL 600



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 180/378 (47%), Gaps = 4/378 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSS-LLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M +  ++P   TI +L   C     +     + +   +   + ++   N  I  + K G 
Sbjct: 213 MQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A + F  MPAR   ++N LI G  +    K+AL +++EM+ HG+     T  SVLS 
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+  G   +G+ +H  +   G   +  + + L+++Y + G    A  +F  + ++++ +W
Sbjct: 333 CAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSW 392

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            +M+  + +  +      ++ +MK   V  + ++   ++  CS    LD+G+++HS++ +
Sbjct: 393 TVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEE 452

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           +  V  ++ + +ALVD Y+ CG +  A + F  +     +SWN+++   A      +A+E
Sbjct: 453 MN-VAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVE 511

Query: 300 LFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           LF +M +L   +P   +    L   +  G V  G +    ++ LG    + H    + D+
Sbjct: 512 LFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHY-GCIVDL 570

Query: 359 YGKCNVIESSVAVFESAP 376
            G+  +++ +    +  P
Sbjct: 571 LGRAGMLDEAFHFIKKMP 588



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 138/291 (47%), Gaps = 8/291 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSG 58
           ML   + P   T+ ++   C  +  L   + + SY + N     NI + N  I+ + K G
Sbjct: 314 MLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILT-NSLINMYAKCG 372

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            + +A+++F  M  +D+V++ +++ G  K      A  L++EM    +        S+LS
Sbjct: 373 DMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLS 432

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            CS  G   +G +IH  +  +    +L + S LVD+Y + G    A ++F ++  +   +
Sbjct: 433 ACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS 492

Query: 179 WNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           WN M+          E + ++++M + +  +P+G++   ++  C+   ++DEG +    +
Sbjct: 493 WNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLM 552

Query: 238 IKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
             LG V D   +    +VD     G L EA      +P++ + + W S+++
Sbjct: 553 SSLGVVPDTEHY--GCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLA 601


>gi|125571373|gb|EAZ12888.1| hypothetical protein OsJ_02809 [Oryza sativa Japonica Group]
          Length = 669

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 163/604 (26%), Positives = 315/604 (52%), Gaps = 9/604 (1%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+K+FD M   +   +N +I G      P+ AL ++ EM   G+     T ++V+S  + 
Sbjct: 71  ARKVFDGMAQPNAFVWNCMIRGYSSCEAPRDALAVFREMRRRGVSPDNYTMAAVVSASAA 130

Query: 123 A---GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
                + + G  IH  V  +GF  ++++ S LV+ Y        A  +F+E+ ER++ +W
Sbjct: 131 FAGLKWRSNGDAIHALVRRIGFTSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSW 190

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             M+ A  +    D+VL+M ++M+AEG+ PN ++   ++  C     +DEG+ +++ V K
Sbjct: 191 TSMISACAQCGHWDKVLKMLSEMQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGK 250

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G ++ ++ + NAL+  Y+ CG L +A ++F  +P     SWN+++  +       +AL 
Sbjct: 251 FG-IEADVDIRNALISMYTKCGCLSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALR 309

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F  M L    P   + V  L+  ++ G +  G  +H Y+   G    ++ + ++L +MY
Sbjct: 310 IFEEMLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNI-LTNSLINMY 368

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  + ++  VF++   + +     ++   +       A  +F  M    +   E+ L 
Sbjct: 369 AKCGDMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALV 428

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A S   + + G  R +H    +     ++ +  +L+D Y++CG I+ + ++F K+ 
Sbjct: 429 SLLSACSQLGALDKG--REIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQ 486

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
               + + +++ G + NG G+EA+++ + M++ +   PD +T   VL  C H GMV EG 
Sbjct: 487 HKQTLSWNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGL 546

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
             F  M S+ G+  D +HY C++D+LGRAG+LD+A   +++ P   + ++W SLL +CRV
Sbjct: 547 RYFYLMSSL-GVVPDTEHYGCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLAACRV 605

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H    +G+ +   ++ + P D  V+  VSN ++E  +++    +R    +R + +  GHS
Sbjct: 606 HHRMDLGKVIGQHIVNVAPNDVGVHVLVSNLHAEESQWDDVEHVRGLMGSRGIEKTPGHS 665

Query: 659 LIEV 662
            ++V
Sbjct: 666 SVQV 669



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 122/452 (26%), Positives = 216/452 (47%), Gaps = 15/452 (3%)

Query: 50  TIDDFVKSGHLN---------SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           T D FV SG +N          A K+F+EM  RD+V++  +IS C +  H  + L +  E
Sbjct: 153 TSDVFVMSGLVNYYGAFRSVEEASKVFEEMYERDVVSWTSMISACAQCGHWDKVLKMLSE 212

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M + GI  +  T  S+LS C       EG  ++ +V   G   ++ I + L+ +Y + G 
Sbjct: 213 MQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL+ F  +P R   +WN ++  F +     E LR++ +M   GV P+G++   ++  
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L +G  +HS++   G    NI   N+L++ Y+ CG +  A++ F  +   DV+S
Sbjct: 333 CAQLGELRKGMHVHSYIKDNGICCDNILT-NSLINMYAKCGDMAAAERVFQTMTKKDVVS 391

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W  +V  Y        A  LF  M++        + V  L+  S+ G +  G++IH Y+ 
Sbjct: 392 WTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIE 451

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           ++      + ++SAL DMY KC  I+++  +F     +     N+++  L  +G  K+AV
Sbjct: 452 EMNVAK-DLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAV 510

Query: 401 EMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           E+F  M++ +    D +TL   L A +     + G  R  +  +            C ++
Sbjct: 511 ELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEG-LRYFYLMSSLGVVPDTEHYGC-IV 568

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
           D   R G ++ +    +K+P  PN V + S++
Sbjct: 569 DLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLL 600



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 86/378 (22%), Positives = 180/378 (47%), Gaps = 4/378 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSS-LLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M +  ++P   TI +L   C     +     + +   +   + ++   N  I  + K G 
Sbjct: 213 MQAEGIIPNKVTIISLLSACGQTQAVDEGRWVYNQVGKFGIEADVDIRNALISMYTKCGC 272

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A + F  MPAR   ++N LI G  +    K+AL +++EM+ HG+     T  SVLS 
Sbjct: 273 LSDALEAFQAMPARYTKSWNTLIDGFVQNHEHKEALRIFEEMLLHGVTPDGITLVSVLSA 332

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+  G   +G+ +H  +   G   +  + + L+++Y + G    A  +F  + ++++ +W
Sbjct: 333 CAQLGELRKGMHVHSYIKDNGICCDNILTNSLINMYAKCGDMAAAERVFQTMTKKDVVSW 392

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            +M+  + +  +      ++ +MK   V  + ++   ++  CS    LD+G+++HS++ +
Sbjct: 393 TVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLSACSQLGALDKGREIHSYIEE 452

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           +  V  ++ + +ALVD Y+ CG +  A + F  +     +SWN+++   A      +A+E
Sbjct: 453 MN-VAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLSWNAMIGGLASNGYGKEAVE 511

Query: 300 LFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           LF +M +L   +P   +    L   +  G V  G +    ++ LG    + H    + D+
Sbjct: 512 LFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLMSSLGVVPDTEHY-GCIVDL 570

Query: 359 YGKCNVIESSVAVFESAP 376
            G+  +++ +    +  P
Sbjct: 571 LGRAGMLDEAFHFIKKMP 588



 Score = 89.7 bits (221), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 68/291 (23%), Positives = 138/291 (47%), Gaps = 8/291 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSG 58
           ML   + P   T+ ++   C  +  L   + + SY + N     NI + N  I+ + K G
Sbjct: 314 MLLHGVTPDGITLVSVLSACAQLGELRKGMHVHSYIKDNGICCDNILT-NSLINMYAKCG 372

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            + +A+++F  M  +D+V++ +++ G  K      A  L++EM    +        S+LS
Sbjct: 373 DMAAAERVFQTMTKKDVVSWTVMVCGYVKGHQFTMAFNLFEEMKIAEVVAHEMALVSLLS 432

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            CS  G   +G +IH  +  +    +L + S LVD+Y + G    A ++F ++  +   +
Sbjct: 433 ACSQLGALDKGREIHSYIEEMNVAKDLCLESALVDMYAKCGCIDTASEIFRKMQHKQTLS 492

Query: 179 WNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           WN M+          E + ++++M + +  +P+G++   ++  C+   ++DEG +    +
Sbjct: 493 WNAMIGGLASNGYGKEAVELFDQMLELQDPKPDGITLKAVLGACAHVGMVDEGLRYFYLM 552

Query: 238 IKLGWV-DVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
             LG V D   +    +VD     G L EA      +P++ + + W S+++
Sbjct: 553 SSLGVVPDTEHY--GCIVDLLGRAGMLDEAFHFIKKMPIEPNPVIWGSLLA 601


>gi|147833409|emb|CAN68525.1| hypothetical protein VITISV_018083 [Vitis vinifera]
          Length = 1796

 Score =  271 bits (693), Expect = 8e-70,   Method: Compositional matrix adjust.
 Identities = 186/671 (27%), Positives = 323/671 (48%), Gaps = 106/671 (15%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           NR +  + +   +  A++LF+EMP R+  ++N +I G  K     ++L L+D M      
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMP----H 101

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           + A +++ V+S     GF  EG              NL +                A  L
Sbjct: 102 KDAFSWNVVIS-----GFAKEG--------------NLEV----------------ARRL 126

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP---NGLSFCYMVRGCSIG 224
           F+E+P +N   WN M+  +    RP E + ++  +    +E    +      +V  C+  
Sbjct: 127 FNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNL 186

Query: 225 MLLDEGKQLHSHVI-------------------KLGWVDV-----------NIFVANALV 254
             LD GKQ+H+ ++                   K G +D            + F  +AL+
Sbjct: 187 GALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALI 246

Query: 255 DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
             Y++CG + +A++ F       V+ WNS++S Y   +   +ALELF  M+    +    
Sbjct: 247 SGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYS 306

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV---------- 364
           +F   L+  S  G +  G Q+H +V K+GF +  + + SAL DMY KC            
Sbjct: 307 TFASVLSACSTLGIIDQGIQVHAHVYKVGFTN-DIIIDSALVDMYSKCRRPDDACKLFSD 365

Query: 365 ---------------------IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                                I+ +  +F++ P +SL   NS++     +    +A+++F
Sbjct: 366 LQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLF 425

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M   G+ +D+ +L+  + A +  +S  LG         I  G E +  +S SL+D Y 
Sbjct: 426 CEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATII--GLEFDQIISTSLVDFYC 483

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG +E   ++F+++   + V + S++ GY+ NG G EAL++ + M   G+ P  +TF+ 
Sbjct: 484 KCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVG 543

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL+ C+H G+V+EG+  F +MK  Y I+   +HYSCM+D+  RAG+L+ A  L++Q P  
Sbjct: 544 VLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLK 603

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
            D  MWSS+LR C  HGN I+G++VA  +++L+P +   Y Q+S  Y+   ++  S Q+R
Sbjct: 604 ADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVR 663

Query: 644 ETALARKLTRD 654
           +    +K+ +D
Sbjct: 664 KLMYDKKIPKD 674



 Score =  253 bits (647), Expect = 2e-64,   Method: Compositional matrix adjust.
 Identities = 162/579 (27%), Positives = 299/579 (51%), Gaps = 12/579 (2%)

Query: 87   KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY 146
            KF   ++ L  +D ++  G        +  L + S  G   + +++   ++      NL 
Sbjct: 722  KFMAARRTLLEFDMLIKVGFNTHTFLGNRCLDLYSQLGTGNDSLRVFEDIIDK----NLI 777

Query: 147  IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
              +  +  ++R G   RA D+FDE+P+R++ +WN M+  +      D+  R +++M+  G
Sbjct: 778  SWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQKAG 837

Query: 207  VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV-NIFVANALVDFYSACGSLIE 265
            + P+G ++  ++   S       GKQ+H+ +I+ G VD+ N+ V N+L+  Y   G +  
Sbjct: 838  IRPSGFTYSTLLSFVSSAC---RGKQIHASMIRNG-VDLSNVVVGNSLIGMYGKFGVVDY 893

Query: 266  AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
            A   F  +   D+ISWNS++           AL  F  M+     P   +    +   S 
Sbjct: 894  AFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVCSN 953

Query: 326  TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
              ++  G+QI     ++GF   S+ V SA  D++ KCN +E SV VFE         CN+
Sbjct: 954  LQDLEKGEQIFALCIRVGFLSNSI-VSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLCNA 1012

Query: 386  LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
            +++S    G  ++A+++F   + E +   E TLS  L A+S+    + GS   +H   +K
Sbjct: 1013 MISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGS--QIHSLVVK 1070

Query: 446  SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            SG ES++ V+ SL++ Y++ G I+ + + F KI + +++ + +++ G + NG   +AL++
Sbjct: 1071 SGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALEI 1130

Query: 506  LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
             + ++  G  PD++T   VL  CN  G+V EG  +F+SM+  YG+    +HY+C++DM+ 
Sbjct: 1131 FKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEKEYGVIPAIEHYACIVDMMS 1190

Query: 566  RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
            R G L +A ++++  P     ++W SLL +C ++G+     RVA  +MELEP     Y  
Sbjct: 1191 RGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGDLRFTERVAERVMELEPQSSLPYLV 1250

Query: 626  VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            ++  Y   G +E  +++      + + + IG S I + +
Sbjct: 1251 LAQAYEMRGRWESLVRVXRAMKEKGVRKVIGCSWIGIKN 1289



 Score =  171 bits (434), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 128/450 (28%), Positives = 230/450 (51%), Gaps = 8/450 (1%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            N+ S N  +  FV+ G L  A+ +FDEMP RD+V++N +ISG   F     A   + EM 
Sbjct: 775  NLISWNIFLKAFVRFGELERARDVFDEMPKRDVVSWNTMISGYVSFGLFDDAFRFFSEMQ 834

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPS 161
              GI+ S  T+S++LS  S+A     G QIH  ++  G  L N+ +G+ L+ +Y + G  
Sbjct: 835  KAGIRPSGFTYSTLLSFVSSA---CRGKQIHASMIRNGVDLSNVVVGNSLIGMYGKFGVV 891

Query: 162  VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              A  +F  + E ++ +WN ++ +  +    +  LR +  M++ G  P+  +   ++  C
Sbjct: 892  DYAFGVFITMEELDIISWNSLIWSCGKSGYQNLALRQFVLMRSVGYSPDQFTVSTVITVC 951

Query: 222  SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
            S    L++G+Q+ +  I++G++  N  V++A +D +S C  L ++ + F+ I   D +  
Sbjct: 952  SNLQDLEKGEQIFALCIRVGFLS-NSIVSSASIDLFSKCNRLEDSVRVFEEIYQWDSVLC 1010

Query: 282  NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            N+++S YA +    +AL+LF        RP+  +    L+  S    V  G QIH  V K
Sbjct: 1011 NAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSAVSILLPVDQGSQIHSLVVK 1070

Query: 342  LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             G +   V V S+L +MY K  +I+S++  F     R L   N+++  L ++G +  A+E
Sbjct: 1071 SGLE-SDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISWNTMIMGLAYNGRVSKALE 1129

Query: 402  MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +F  ++  G   DE+TL+  L A +V    + G   +      + G    I     ++D 
Sbjct: 1130 IFKELLIGGPPPDEITLAGVLLACNVGGLVDEG-LSIFSSMEKEYGVIPAIEHYACIVDM 1188

Query: 462  YSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
             SR G ++ +  + E +P  P+ + + S++
Sbjct: 1189 MSRGGKLKEAMDIVELMPHEPSGLIWGSLL 1218



 Score =  145 bits (365), Expect = 9e-32,   Method: Compositional matrix adjust.
 Identities = 128/562 (22%), Positives = 241/562 (42%), Gaps = 103/562 (18%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N +S N  I+ ++KSG    + +LFD MP +D  ++N++ISG  K  + + A  L++
Sbjct: 69  PKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFN 128

Query: 100 EM----------VSHGI------KESASTF------------------SSVLSVCSNAGF 125
           EM          + HG       KE+   F                  ++V+  C+N G 
Sbjct: 129 EMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGA 188

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG---PSVRALDLFDELPERNLAT---- 178
              G QIH R++      +  +GS LV+LY + G    +   L+L  E    +L+     
Sbjct: 189 LDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISG 248

Query: 179 ------------------------WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
                                   WN M+  +   +   E L ++N M+ +GV+ +  +F
Sbjct: 249 YASCGRMNDARRIFCLKSNXCVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTF 308

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA--------------- 259
             ++  CS   ++D+G Q+H+HV K+G+ + +I + +ALVD YS                
Sbjct: 309 ASVLSACSTLGIIDQGIQVHAHVYKVGFTN-DIIIDSALVDMYSKCRRPDDACKLFSDLQ 367

Query: 260 ----------------CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
                           CG + +A++ FD +P   +ISWNS++  ++      +AL+LF  
Sbjct: 368 AYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCE 427

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M     R    S    ++  +   ++  G+QI    T +G +   + + ++L D Y KC 
Sbjct: 428 MNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQI-ISTSLVDFYCKCG 486

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           ++E    +F+          NS++     +G+  +A+ +F  M   G+   ++T    L 
Sbjct: 487 LVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLS 546

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
           A         G  +  +   +       I     ++D Y+R G +E +  + E++P   +
Sbjct: 547 ACDHCGLVEEGR-KWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKAD 605

Query: 483 VVCFTSIMNG---YSRNGMGRE 501
              ++S++ G   +  N +G++
Sbjct: 606 TSMWSSVLRGCVAHGNNILGKK 627



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/295 (26%), Positives = 135/295 (45%), Gaps = 5/295 (1%)

Query: 1    MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGH 59
            M S    P   T++T+   C+++  L     + + C     L N   S+ +ID F K   
Sbjct: 932  MRSVGYSPDQFTVSTVITVCSNLQDLEKGEQIFALCIRVGFLSNSIVSSASIDLFSKCNR 991

Query: 60   LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
            L  + ++F+E+   D V  N +IS        + AL L+   +   ++ +  T S VLS 
Sbjct: 992  LEDSVRVFEEIYQWDSVLCNAMISSYAWHGFGENALQLFVLTLRENLRPTEFTLSIVLSA 1051

Query: 120  CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
             S      +G QIH  V+  G   ++ + S LV++Y + G    A+  F ++  R+L +W
Sbjct: 1052 VSILLPVDQGSQIHSLVVKSGLESDVIVASSLVEMYAKFGLIDSAMKTFAKIGARDLISW 1111

Query: 180  NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            N M+       R  + L ++ ++   G  P+ ++   ++  C++G L+DEG  + S + K
Sbjct: 1112 NTMIMGLAYNGRVSKALEIFKELLIGGPPPDEITLAGVLLACNVGGLVDEGLSIFSSMEK 1171

Query: 240  LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV-ISWNSIV---SIYAD 290
               V   I     +VD  S  G L EA    + +P +   + W S++    IY D
Sbjct: 1172 EYGVIPAIEHYACIVDMMSRGGKLKEAMDIVELMPHEPSGLIWGSLLCACEIYGD 1226



 Score = 74.7 bits (182), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/383 (21%), Positives = 149/383 (38%), Gaps = 79/383 (20%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G+ LH   +K G +   + + N L+  YS C S+ EA++ F+ +P  +  SWN+++  Y 
Sbjct: 25  GRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYL 84

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                  +LELF  M                                         H   
Sbjct: 85  KSGSKGKSLELFDSMP----------------------------------------HKDA 104

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
              + +   + K   +E +  +F   P ++    NS++     +G  K+AV +F    D 
Sbjct: 105 FSWNVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFK---DL 161

Query: 410 GIG-LDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
            +  L+     T + A  V A  NLG+    + +H   +    E +  +  SL++ Y +C
Sbjct: 162 SLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKC 221

Query: 466 GHIELSHQVFEKIPSPN-------------------------------VVCFTSIMNGYS 494
           G I+ ++ V   +  P+                               VV + S+++GY 
Sbjct: 222 GDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKSNXCVVLWNSMISGYV 281

Query: 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
            N    EAL++   M ++G+  D  TF  VL+ C+  G++ +G  V   +  V G   D 
Sbjct: 282 ANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGIQVHAHVYKV-GFTNDI 340

Query: 555 QHYSCMIDMLGRAGILDKAEELL 577
              S ++DM  +    D A +L 
Sbjct: 341 IIDSALVDMYSKCRRPDDACKLF 363



 Score = 70.5 bits (171), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 53/255 (20%), Positives = 114/255 (44%), Gaps = 47/255 (18%)

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G++Y G+ +H    K G  H  + + + L  MY +CN +  +  +FE  P R+    N++
Sbjct: 20  GSIYRGRXLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTM 79

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +   L SG+   ++E+F  M                                      K 
Sbjct: 80  IEGYLKSGSKGKSLELFDSMPH------------------------------------KD 103

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
            F  N+ +S      +++ G++E++ ++F ++P  N + + S+++GY+ NG  +EA+ + 
Sbjct: 104 AFSWNVVIS-----GFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYACNGRPKEAVGLF 158

Query: 507 EVM----IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           + +    ++R    D      V+  C + G +  G+ + ++   V  ++ D    S +++
Sbjct: 159 KDLSLNPLER-FCGDTFVLATVVGACTNLGALDCGKQI-HARIVVDEVEFDSVLGSSLVN 216

Query: 563 MLGRAGILDKAEELL 577
           + G+ G +D A  +L
Sbjct: 217 LYGKCGDIDSANHVL 231


>gi|356518523|ref|XP_003527928.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Glycine max]
          Length = 686

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 182/656 (27%), Positives = 326/656 (49%), Gaps = 40/656 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I+  N  I  + K    + A+ LFDEMP R++V++  ++S       P +AL LY+ M+
Sbjct: 37  HIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSAFTNSGRPHEALTLYNHML 96

Query: 103 -SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            S  ++ +   +S+VL  C   G    G+ +H  V       +  + + L+D+Y++ G  
Sbjct: 97  ESKTVQPNQFLYSAVLKACGLVGDVELGMLVHQHVSEARLEFDTVLMNALLDMYVKCGSL 156

Query: 162 V-------------------------------RALDLFDELPERNLATWNLMLRAFCELS 190
           +                                A +LFD++PE +L +WN ++    + +
Sbjct: 157 MDAKRVFHEIPCKNSTSWNTLILGHAKQGLMRDAFNLFDQMPEPDLVSWNSIIAGLADNA 216

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            P   L+  + M  +G++ +  +F   ++ C +   L  G+Q+H  +IK G ++ + +  
Sbjct: 217 SP-HALQFLSMMHGKGLKLDAFTFPCALKACGLLGELTMGRQIHCCIIKSG-LECSCYCI 274

Query: 251 NALVDFYSACGSLIEAKKSFDF-IPVDDVIS-WNSIVSIYADYDLIFDALELFFRMQLCR 308
           ++L+D YS C  L EA K FD   P+ + ++ WNS++S Y      + AL +   M    
Sbjct: 275 SSLIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANGDWWRALGMIACMHHSG 334

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +    +F   L       N+    Q+HG +   G++   V V S L D+Y K   I S+
Sbjct: 335 AQFDSYTFSIALKVCIYFDNLRLASQVHGLIITRGYELDHV-VGSILIDLYAKQGNINSA 393

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           + +FE  P + +   +SL+      G       +F  MV   + +D   LS  LK    S
Sbjct: 394 LRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHLDLEIDHFVLSIVLKV--SS 451

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           + A+L S + +H   +K G+ES   ++ +L D Y++CG IE +  +F+ +   + + +T 
Sbjct: 452 SLASLQSGKQIHSFCLKKGYESERVITTALTDMYAKCGEIEDALALFDCLYEIDTMSWTG 511

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           I+ G ++NG   +A+ +L  MI+ G  P+K+T L VL  C H+G+V+E   +F S+++ +
Sbjct: 512 IIVGCAQNGRADKAISILHKMIESGTKPNKITILGVLTACRHAGLVEEAWTIFKSIETEH 571

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
           G+    +HY+CM+D+  +AG   +A  L+   P   D  +W SLL +C  + N  +   V
Sbjct: 572 GLTPCPEHYNCMVDIFAKAGRFKEARNLINDMPFKPDKTIWCSLLDACGTYKNRHLANIV 631

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           A  L+   P D +VY  +SN Y+ +G ++   ++RE A+ +   +  G S IE+ S
Sbjct: 632 AEHLLATSPEDASVYIMLSNVYASLGMWDNLSKVRE-AVRKVGIKGAGKSWIEIFS 686



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 129/506 (25%), Positives = 241/506 (47%), Gaps = 47/506 (9%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H  ++ LG   ++++ + ++ +Y +      A  LFDE+P RN+ ++  M+ AF    R
Sbjct: 25  LHSLIIKLGLSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRNIVSFTTMVSAFTNSGR 84

Query: 192 PDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           P E L +YN M +++ V+PN   +  +++ C +   ++ G  +H HV +   ++ +  + 
Sbjct: 85  PHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGMLVHQHVSE-ARLEFDTVLM 143

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+D Y  CGSL++AK+ F  IP  +  SWN+++  +A   L+ DA  LF +M      
Sbjct: 144 NALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLMRDAFNLFDQM----PE 199

Query: 311 PSIRSF---------------VEFLNF-------------------ASRTGNVYFGKQIH 336
           P + S+               ++FL+                        G +  G+QIH
Sbjct: 200 PDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFPCALKACGLLGELTMGRQIH 259

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE--SAPGRSLECCNSLMTSLLHSG 394
             + K G +  S +  S+L DMY  C +++ ++ +F+  S    SL   NS+++  + +G
Sbjct: 260 CCIIKSGLE-CSCYCISSLIDMYSNCKLLDEAMKIFDKNSPLAESLAVWNSMLSGYVANG 318

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
           +   A+ M   M   G   D  T S  LK      +  L S   +H   I  G+E +  V
Sbjct: 319 DWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLAS--QVHGLIITRGYELDHVV 376

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
              L+D Y++ G+I  + ++FE++P+ +VV ++S++ G +R G+G     +   M+   L
Sbjct: 377 GSILIDLYAKQGNINSALRLFERLPNKDVVAWSSLIVGCARLGLGTLVFSLFMDMVHLDL 436

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
             D      VL   +    ++ G+ + +S     G +++R   + + DM  + G ++ A 
Sbjct: 437 EIDHFVLSIVLKVSSSLASLQSGKQI-HSFCLKKGYESERVITTALTDMYAKCGEIEDAL 495

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHG 600
            L        D M W+ ++  C  +G
Sbjct: 496 ALF-DCLYEIDTMSWTGIIVGCAQNG 520



 Score =  139 bits (349), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 121/470 (25%), Positives = 211/470 (44%), Gaps = 48/470 (10%)

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +R C     +   K LHS +IKLG +  +IF+ N+++  Y+ C    +A+  FD +P  +
Sbjct: 10  LRCCGRFQAIKHAKSLHSLIIKLG-LSNHIFLLNSIISVYAKCSRFDDARTLFDEMPHRN 68

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIH 336
           ++S+ ++VS + +     +AL L+  M   +  +P+   +   L      G+V  G  +H
Sbjct: 69  IVSFTTMVSAFTNSGRPHEALTLYNHMLESKTVQPNQFLYSAVLKACGLVGDVELGMLVH 128

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +V++   +  +V + +AL DMY KC  +  +  VF   P ++    N+L+      G +
Sbjct: 129 QHVSEARLEFDTV-LMNALLDMYVKCGSLMDAKRVFHEIPCKNSTSWNTLILGHAKQGLM 187

Query: 397 KDAVEMFGFMVD------------------------------EGIGLDEVTLSTTLKALS 426
           +DA  +F  M +                              +G+ LD  T    LKA  
Sbjct: 188 RDAFNLFDQMPEPDLVSWNSIIAGLADNASPHALQFLSMMHGKGLKLDAFTFPCALKACG 247

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP---NV 483
           +     +G  R +HCC IKSG E +     SL+D YS C  ++ + ++F+K  SP   ++
Sbjct: 248 LLGELTMG--RQIHCCIIKSGLECSCYCISSLIDMYSNCKLLDEAMKIFDK-NSPLAESL 304

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
             + S+++GY  NG    AL M+  M   G   D  TF   L  C +   ++    V + 
Sbjct: 305 AVWNSMLSGYVANGDWWRALGMIACMHHSGAQFDSYTFSIALKVCIYFDNLRLASQV-HG 363

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           +    G + D    S +ID+  + G ++ A  L ++ P   D + WSSL+  C   G   
Sbjct: 364 LIITRGYELDHVVGSILIDLYAKQGNINSALRLFERLP-NKDVVAWSSLIVGCARLG--- 419

Query: 604 IGRRVANILMELEPVDFA----VYSQVSNFYSEIGEFEVSMQIRETALAR 649
           +G  V ++ M++  +D      V S V    S +   +   QI    L +
Sbjct: 420 LGTLVFSLFMDMVHLDLEIDHFVLSIVLKVSSSLASLQSGKQIHSFCLKK 469


>gi|302773325|ref|XP_002970080.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
 gi|300162591|gb|EFJ29204.1| hypothetical protein SELMODRAFT_171135 [Selaginella moellendorffii]
          Length = 829

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 179/622 (28%), Positives = 321/622 (51%), Gaps = 17/622 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G ++ A++ FD M  R++V+++ +I+   +  HP  AL L+  M   G+K +A TF
Sbjct: 87  YNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQRGHPGDALELFVRMDHEGVKANAITF 146

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            SVL  C++      G  IH R+++ G  G ++ +G+ +V++Y + G    A ++F+ + 
Sbjct: 147 VSVLDACASMRAIALGKSIHERIVADGLLGDDVILGNTIVNMYGKCGEVDLAREVFERME 206

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            +N  TWN M+ A     R  E   +  +M  +G+ PN ++   ++  C+    +  G+ 
Sbjct: 207 AKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDGLRPNKITLVSVIDACAWMQSIVRGRI 266

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  V   G    N  VANALV+ Y  CG L  A+ + + I   D ISW ++++ YA + 
Sbjct: 267 VHEIVAGEGLESDNT-VANALVNLYGKCGKLRAARHALEGIETRDKISWTTLLAAYARHG 325

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
               A+ +  RM     +    +FV  L        +  G++IH  + + G +   V +Q
Sbjct: 326 HGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAIAALALGEEIHDRLAESGIELDPV-LQ 384

Query: 353 SALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
           +AL DMYGKC   +++   F+     R +   N+L+ + +     K+ + +F  M  +G+
Sbjct: 385 TALVDMYGKCGNPDAARRAFDRMSDVRDVTVWNALLAAYVLRDQGKETLGIFARMSLQGV 444

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV------SCSLMDAYSRC 465
             D VT  + L A +  A+  LG  RL H   ++ G     AV      + S+++ Y++C
Sbjct: 445 APDAVTFLSILDACASLAALGLG--RLTHSRMLERGLFDRQAVASADLLTTSVINMYAKC 502

Query: 466 GHIELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           G +  +   F K     + +VV +++++  YS+ G+  EAL     M Q G+ PD V+F+
Sbjct: 503 GSLADAKAEFAKARRARASDVVAWSAMVAAYSQFGLSEEALRCFYSMQQEGVKPDSVSFV 562

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
             +AGC+HSG+V+E    F S++  +GI     H++C++D+L RAG + +AE L+++ P 
Sbjct: 563 SAIAGCSHSGLVREAVAFFTSLRHDHGIAPTEAHFACLVDLLSRAGWIREAEALMRRAPL 622

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
           G     W +LL +CR +G+    RRVA  L  L     + YS +++ +    +++     
Sbjct: 623 GAHHSTWMTLLSACRTYGDLERARRVAARLASLRS--GSAYSLLASVFCLSRKWDDVRNA 680

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R++ + R      G S IE+N+
Sbjct: 681 RQSLVERGFITQPGCSWIEINN 702



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 126/537 (23%), Positives = 256/537 (47%), Gaps = 20/537 (3%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R   ++NL I+   +  H  +AL ++  M   G+     +  ++L   ++ G  ++G
Sbjct: 1   MADRSPFSWNLAIAEYARNGHHARALEIFRAMALEGVAPDRVSCIAILDAFASLGDLSQG 60

Query: 130 IQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
              H  V    G G ++ + + ++ +Y R G    A   FD +  RN+ +W+ M+ A+ +
Sbjct: 61  EFFHRTVCEASGLGSDVVVATAVLTMYNRCGSVSHARRAFDAMVVRNVVSWSAMIAAYAQ 120

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
              P + L ++ +M  EGV+ N ++F  ++  C+    +  GK +H  ++  G +  ++ 
Sbjct: 121 RGHPGDALELFVRMDHEGVKANAITFVSVLDACASMRAIALGKSIHERIVADGLLGDDVI 180

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           + N +V+ Y  CG +  A++ F+ +   + ++WN++++  + +D   +A  L   M L  
Sbjct: 181 LGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMDLDG 240

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            RP+  + V  ++  +   ++  G+ +H  V   G +  +  V +AL ++YGKC  + ++
Sbjct: 241 LRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNT-VANALVNLYGKCGKLRAA 299

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
               E    R      +L+ +    G+ K A+ +   M  EG+ LD  T    L++    
Sbjct: 300 RHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCVAI 359

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFT 487
           A+  LG    +H    +SG E +  +  +L+D Y +CG+ + + + F+++    +V  + 
Sbjct: 360 AALALGE--EIHDRLAESGIELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTVWN 417

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM--K 545
           +++  Y     G+E L +   M  +G+ PD VTFL +L  C     +  G+L  + M  +
Sbjct: 418 ALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLER 477

Query: 546 SVYGIDADRQHY-------SCMIDMLGRAGIL--DKAEELLQQTPGGGDCMMWSSLL 593
            ++    DRQ         + +I+M  + G L   KAE    +     D + WS+++
Sbjct: 478 GLF----DRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMV 530



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 110/451 (24%), Positives = 203/451 (45%), Gaps = 21/451 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++   N  ++ + K G ++ A+++F+ M A++ VT+N +I+ C +    K+A  L  EM 
Sbjct: 178 DVILGNTIVNMYGKCGEVDLAREVFERMEAKNAVTWNTMIAACSRHDRYKEAFALLGEMD 237

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++ +  T  SV+  C+       G  +H  V   G   +  + + LV+LY + G   
Sbjct: 238 LDGLRPNKITLVSVIDACAWMQSIVRGRIVHEIVAGEGLESDNTVANALVNLYGKCGKLR 297

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A    + +  R+  +W  +L A+         + +  +M  EGV+ +  +F  ++  C 
Sbjct: 298 AARHALEGIETRDKISWTTLLAAYARHGHGKRAIAVIKRMDHEGVKLDSFTFVNLLESCV 357

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISW 281
               L  G+++H  + + G ++++  +  ALVD Y  CG+   A+++FD +  V DV  W
Sbjct: 358 AIAALALGEEIHDRLAESG-IELDPVLQTALVDMYGKCGNPDAARRAFDRMSDVRDVTVW 416

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++++ Y   D   + L +F RM L    P   +F+  L+  +    +  G+  H  + +
Sbjct: 417 NALLAAYVLRDQGKETLGIFARMSLQGVAPDAVTFLSILDACASLAALGLGRLTHSRMLE 476

Query: 342 LG-FDHGSVHVQSALT----DMYGKCNVIESSVAVF---ESAPGRSLECCNSLMTSLLHS 393
            G FD  +V     LT    +MY KC  +  + A F     A    +   ++++ +    
Sbjct: 477 RGLFDRQAVASADLLTTSVINMYAKCGSLADAKAEFAKARRARASDVVAWSAMVAAYSQF 536

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS-----ASANLGSCRLLHCCAIKSGF 448
           G  ++A+  F  M  EG+  D V+  + +   S S     A A   S R  H      G 
Sbjct: 537 GLSEEALRCFYSMQQEGVKPDSVSFVSAIAGCSHSGLVREAVAFFTSLRHDH------GI 590

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
               A    L+D  SR G I  +  +  + P
Sbjct: 591 APTEAHFACLVDLLSRAGWIREAEALMRRAP 621


>gi|224098357|ref|XP_002311156.1| predicted protein [Populus trichocarpa]
 gi|222850976|gb|EEE88523.1| predicted protein [Populus trichocarpa]
          Length = 535

 Score =  271 bits (693), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 158/534 (29%), Positives = 276/534 (51%), Gaps = 5/534 (0%)

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            G +IH      G   ++ + +P++ +Y R G    A  LF E+  R+L  W+ ++ AF 
Sbjct: 6   RGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFV 65

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +   P E L ++  M+ EG++ N +     +  C+    L  GK +H   +K   VD++I
Sbjct: 66  QSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGKSMHCCAVKAN-VDLDI 124

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            V  ALV  Y+ CG    A   F+ +P  DV++WN++++ YA     F ALE+F ++QL 
Sbjct: 125 SVGTALVSMYAKCGFFALALTLFNRMPCKDVVTWNAMINGYAQIGEPFPALEMFHKLQLS 184

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P+  + V  L   +   ++  G  IHG + K GF+    HV++AL DMY KC  +  
Sbjct: 185 ELNPNSGTMVGLLPAFALLNDLDQGSCIHGKIIKCGFE-SECHVKTALIDMYAKCGSLSG 243

Query: 368 SVAVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           +  +F     R  E   N ++   +HSG+  DA   F  M  E I  + VT+ T L A++
Sbjct: 244 AEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPNIVTIVTVLPAVA 303

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
             ++   G    LH   I+ GF+S   V   L+D Y++CG ++ S ++F ++ + + V +
Sbjct: 304 HLSALRAG--MTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFHEMKNKDTVSW 361

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
             ++ GY+ +G G  A+++   M    +  D  +F+ VL+ C H+G++ EG+ +F+SM  
Sbjct: 362 NVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGEGRKIFDSMSK 421

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            + ++ D +HY+CM D+LGRAG+ ++  +L++  P   D  +W +LL +  +H N  +  
Sbjct: 422 QHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGASTMHSNVQLAE 481

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
              + L +LE  +   Y+ +SN Y+  G +      R       L +  G+S +
Sbjct: 482 FALHHLDKLEHKNLTHYAALSNTYARSGRWADVGNTRSKITKTGLRKSPGYSWV 535



 Score =  176 bits (447), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 126/516 (24%), Positives = 233/516 (45%), Gaps = 40/516 (7%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G +++AK+LF E+  RD+V ++ +I+   +  +P++AL L+  M + G++ +    
Sbjct: 33  YARCGEVDTAKQLFQEIKGRDLVAWSAIIAAFVQSGYPQEALSLFRSMQNEGLQANKVIL 92

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            S L  C+       G  +HC  +     L++ +G+ LV +Y + G    AL LF+ +P 
Sbjct: 93  LSSLPACAEVSSLKLGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPC 152

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           +++ TWN M+  + ++  P   L M++K++   + PN  +   ++   ++   LD+G  +
Sbjct: 153 KDVVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCI 212

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVSIYADYD 292
           H  +IK G+ +    V  AL+D Y+ CGSL  A+  F       D +SWN +++ Y    
Sbjct: 213 HGKIIKCGF-ESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSG 271

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              DA   F +M+L   +P+I + V  L   +    +  G  +H YV ++GF      V 
Sbjct: 272 HAIDAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGF-QSKTPVG 330

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           + L DMY KC  ++ S  +F     +     N ++      G    A+E+F  M D  I 
Sbjct: 331 NCLIDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIR 390

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           LD  +    L A           CR  H   I  G +        + D+ S+       H
Sbjct: 391 LDSFSFINVLSA-----------CR--HAGLIGEGRK--------IFDSMSK------QH 423

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           Q+      P++  +  + +   R G+  E LD+++ M      PD   +  +L       
Sbjct: 424 QL-----EPDLEHYACMADLLGRAGLFNEVLDLIKSMPME---PDAGVWGALLGASTMHS 475

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
            V+  +   + +  +     +  HY+ + +   R+G
Sbjct: 476 NVQLAEFALHHLDKLE--HKNLTHYAALSNTYARSG 509



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/363 (24%), Positives = 168/363 (46%), Gaps = 7/363 (1%)

Query: 18  PTCTSIVPLSSSLLLDSYC---QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARD 74
           P C  +  L   L    +C   + N  L+I      +  + K G    A  LF+ MP +D
Sbjct: 97  PACAEVSSLK--LGKSMHCCAVKANVDLDISVGTALVSMYAKCGFFALALTLFNRMPCKD 154

Query: 75  MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHC 134
           +VT+N +I+G  +   P  AL ++ ++    +  ++ T   +L   +      +G  IH 
Sbjct: 155 VVTWNAMINGYAQIGEPFPALEMFHKLQLSELNPNSGTMVGLLPAFALLNDLDQGSCIHG 214

Query: 135 RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRAFCELSRPD 193
           +++  GF    ++ + L+D+Y + G    A  LF      ++  +WN+M+  +       
Sbjct: 215 KIIKCGFESECHVKTALIDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAI 274

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           +    + +MK E ++PN ++   ++   +    L  G  LH++VI++G+      V N L
Sbjct: 275 DAFSAFCQMKLENIQPNIVTIVTVLPAVAHLSALRAGMTLHAYVIRMGF-QSKTPVGNCL 333

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +D Y+ CG L  ++K F  +   D +SWN +++ YA +     A+ELF RMQ    R   
Sbjct: 334 IDMYAKCGWLDHSEKIFHEMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDS 393

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            SF+  L+     G +  G++I   ++K       +   + + D+ G+  +    + + +
Sbjct: 394 FSFINVLSACRHAGLIGEGRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIK 453

Query: 374 SAP 376
           S P
Sbjct: 454 SMP 456



 Score = 79.7 bits (195), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/299 (20%), Positives = 133/299 (44%), Gaps = 9/299 (3%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
           ID + K G L+ A+ LF     R D V++N++I+G     H   A   + +M    I+ +
Sbjct: 232 IDMYAKCGSLSGAEFLFHRTGCRKDEVSWNVMIAGYMHSGHAIDAFSAFCQMKLENIQPN 291

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
             T  +VL   ++      G+ +H  V+ +GF     +G+ L+D+Y + G    +  +F 
Sbjct: 292 IVTIVTVLPAVAHLSALRAGMTLHAYVIRMGFQSKTPVGNCLIDMYAKCGWLDHSEKIFH 351

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           E+  ++  +WN+ML  +    R    + ++++M+   +  +  SF  ++  C    L+ E
Sbjct: 352 EMKNKDTVSWNVMLAGYAVHGRGSCAIELFSRMQDSEIRLDSFSFINVLSACRHAGLIGE 411

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV--- 285
           G+++   + K   ++ ++     + D     G   E       +P++ D   W +++   
Sbjct: 412 GRKIFDSMSKQHQLEPDLEHYACMADLLGRAGLFNEVLDLIKSMPMEPDAGVWGALLGAS 471

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +++++  L   AL    +++      ++  +    N  +R+G           +TK G 
Sbjct: 472 TMHSNVQLAEFALHHLDKLE----HKNLTHYAALSNTYARSGRWADVGNTRSKITKTGL 526



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 41/161 (25%), Positives = 81/161 (50%), Gaps = 2/161 (1%)

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
           LG    +H  A + G +S++AV+  +M  Y+RCG ++ + Q+F++I   ++V +++I+  
Sbjct: 4   LGRGTEIHDFARQQGIDSDVAVATPIMTMYARCGEVDTAKQLFQEIKGRDLVAWSAIIAA 63

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552
           + ++G  +EAL +   M   GL  +KV  L  L  C     +K G+   +       +D 
Sbjct: 64  FVQSGYPQEALSLFRSMQNEGLQANKVILLSSLPACAEVSSLKLGK-SMHCCAVKANVDL 122

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           D    + ++ M  + G    A  L  + P   D + W++++
Sbjct: 123 DISVGTALVSMYAKCGFFALALTLFNRMP-CKDVVTWNAMI 162


>gi|356536685|ref|XP_003536866.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Glycine max]
          Length = 723

 Score =  271 bits (692), Expect = 9e-70,   Method: Compositional matrix adjust.
 Identities = 183/642 (28%), Positives = 309/642 (48%), Gaps = 74/642 (11%)

Query: 50  TIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
           ++ DFV  GHL +A K F ++      ++ LL        HP                  
Sbjct: 50  SLKDFVTHGHLTNAFKTFFQIQHHAASSHLLL--------HP------------------ 83

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
                S+L  C++    ++G Q+H +V+SLG   N  + S LV+ Y  +   V A  + +
Sbjct: 84  ---IGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPILVSRLVNFYTNVNLLVDAQFVTE 140

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
                +   WNL++ A+       E L +Y  M  + +EP+  ++  +++ C   +  + 
Sbjct: 141 SSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESLDFNS 200

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G ++H   I+   ++ ++FV NALV  Y   G L  A+  FD +P  D +SWN+I+S YA
Sbjct: 201 GLEVHRS-IEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIISCYA 259

Query: 290 DYDLIFDALELFFRMQ------------------------------LCRKRPSIR----S 315
              +  +A +LF  MQ                              + + R SI     +
Sbjct: 260 SRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLDAIA 319

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
            V  LN  S  G +  GK+IHG+  +  FD    +V++AL  MY +C  +  +  +F   
Sbjct: 320 MVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFD-NVKNALITMYSRCRDLGHAFILFHRT 378

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
             + L   N++++   H    ++   +F  M+ EG+  + VT+++ L     +  ANL  
Sbjct: 379 EEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPL--CARIANLQH 436

Query: 436 CRLLHCCAIK-SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS 494
            +  HC  +K   FE  + +  +L+D YSR G +  + +VF+ +   + V +TS++ GY 
Sbjct: 437 GKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGYG 496

Query: 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
             G G   L + E M +  + PD VT + VL  C+HSG+V +GQ++F  M  V+GI    
Sbjct: 497 MKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVHGIVPRL 556

Query: 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
           +HY+CM D+ GRAG+L+KA+E +   P      MW++LL +CR+HGN  +G   A  L+E
Sbjct: 557 EHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLLGACRIHGNTEMGEWAAGKLLE 616

Query: 615 LEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           ++P     Y  ++N Y+  G +      R+ A  R   R++G
Sbjct: 617 MKPDHSGYYVLIANMYAAAGSW------RKLAEVRTYMRNLG 652



 Score =  129 bits (323), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 106/444 (23%), Positives = 197/444 (44%), Gaps = 52/444 (11%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           ML+ K+ P   T  ++   C   +  +S L +    + +  + +++  N  +  + + G 
Sbjct: 173 MLNKKIEPDEYTYPSVLKACGESLDFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGK 232

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+ LFD MP RD V++N +IS        K+A  L+  M   G++ +   ++++   
Sbjct: 233 LEIARHLFDNMPRRDSVSWNTIISCYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGG 292

Query: 120 CSNAGFYTEGIQ--------IHCRVLSLGFGLNL--YIGS-------------------- 149
           C ++G +   +Q        IH   +++  GLN   +IG+                    
Sbjct: 293 CLHSGNFRGALQLISQMRTSIHLDAIAMVVGLNACSHIGAIKLGKEIHGHAVRTCFDVFD 352

Query: 150 ----PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
                L+ +Y R      A  LF    E+ L TWN ML  +  + R +EV  ++ +M  E
Sbjct: 353 NVKNALITMYSRCRDLGHAFILFHRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQE 412

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G+EPN ++   ++  C+    L  GK+ H +++K    +  + + NALVD YS  G ++E
Sbjct: 413 GMEPNYVTIASVLPLCARIANLQHGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLE 472

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+K FD +   D +++ S++  Y         L+LF  M     +P   + V  L   S 
Sbjct: 473 ARKVFDSLTKRDEVTYTSMILGYGMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSH 532

Query: 326 TGNVYFGK-------QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
           +G V  G+        +HG V +L  +H      + + D++G+  ++  +       P +
Sbjct: 533 SGLVAQGQVLFKRMIDVHGIVPRL--EH-----YACMADLFGRAGLLNKAKEFITGMPYK 585

Query: 379 SLECCNSLMTSLLHSGNIKDAVEM 402
                +++  +LL +  I    EM
Sbjct: 586 P---TSAMWATLLGACRIHGNTEM 606



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 119/521 (22%), Positives = 210/521 (40%), Gaps = 46/521 (8%)

Query: 10  VRTITTLAPTCTSIVPLSSSLLLDSYC-----QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           +  I +L   CT    LS    L +         NP L     +R ++ +     L  A+
Sbjct: 81  LHPIGSLLLACTHFKSLSQGKQLHAQVISLGLDQNPIL----VSRLVNFYTNVNLLVDAQ 136

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            + +     D + +NLLIS   +     +AL +Y  M++  I+    T+ SVL  C  + 
Sbjct: 137 FVTESSNTLDPLHWNLLISAYVRNGFFVEALCVYKNMLNKKIEPDEYTYPSVLKACGESL 196

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
            +  G+++H  + +     +L++ + LV +Y R G    A  LFD +P R+  +WN ++ 
Sbjct: 197 DFNSGLEVHRSIEASSMEWSLFVHNALVSMYGRFGKLEIARHLFDNMPRRDSVSWNTIIS 256

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC----------------------- 221
            +       E  +++  M+ EGVE N + +  +  GC                       
Sbjct: 257 CYASRGIWKEAFQLFGSMQEEGVEMNVIIWNTIAGGCLHSGNFRGALQLISQMRTSIHLD 316

Query: 222 SIGML-----------LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
           +I M+           +  GK++H H ++  + DV   V NAL+  YS C  L  A   F
Sbjct: 317 AIAMVVGLNACSHIGAIKLGKEIHGHAVRTCF-DVFDNVKNALITMYSRCRDLGHAFILF 375

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
                  +I+WN+++S YA  D   +   LF  M      P+  +    L   +R  N+ 
Sbjct: 376 HRTEEKGLITWNAMLSGYAHMDRYEEVTFLFREMLQEGMEPNYVTIASVLPLCARIANLQ 435

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            GK+ H Y+ K       + + +AL DMY +   +  +  VF+S   R      S++   
Sbjct: 436 HGKEFHCYIMKHKQFEEYLLLWNALVDMYSRSGRVLEARKVFDSLTKRDEVTYTSMILGY 495

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
              G  +  +++F  M    I  D VT+   L A S S     G         +  G   
Sbjct: 496 GMKGEGETTLKLFEEMCKLEIKPDHVTMVAVLTACSHSGLVAQGQVLFKRMIDVH-GIVP 554

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
            +     + D + R G +  + +    +P  P    + +++
Sbjct: 555 RLEHYACMADLFGRAGLLNKAKEFITGMPYKPTSAMWATLL 595


>gi|296090396|emb|CBI40215.3| unnamed protein product [Vitis vinifera]
          Length = 653

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 179/615 (29%), Positives = 319/615 (51%), Gaps = 60/615 (9%)

Query: 9   RVRTITTLAPT-----CTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           R RT +T  P      CT     + SL +    Q  PQ +++  N  I +  + G +  A
Sbjct: 3   RWRTASTPYPVIRRFLCTFRCISTLSLPI----QETPQTHLFQCNTRIQELGRLGRVEEA 58

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +++F+EM  RD+V++N +I+G  +     +A  L+D  V   I+    T++ +L+     
Sbjct: 59  RRVFNEMIQRDVVSWNSMINGYSQNGKVDEARLLFDAFVGKNIR----TWTILLT----- 109

Query: 124 GFYTEG-IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
           G+  EG I+    V       N+   + ++  Y++ G    A  LFDE+PE+N+A+WN +
Sbjct: 110 GYAKEGRIEEAREVFESMTERNVVSWNAMISGYVQNGDLKNARKLFDEMPEKNVASWNSV 169

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  +C   R  E   ++++M     E N +S+  M+ G             + H+    W
Sbjct: 170 VTGYCHCYRMSEARELFDQMP----ERNSVSWMVMISG-------------YVHISDY-W 211

Query: 243 VDVNIFVA----------NALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADY 291
              ++FV             ++  ++ CG L +A + ++ +P   +  SW ++++ +   
Sbjct: 212 EAWDVFVKMCRTRNEYSWTTMIAAFAQCGRLDDAIQLYERVPEQTNSASWAAMIAGFVQN 271

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           +   +ALEL   +      PS  SF   L+  +  G+V  G+ IH    K G    S +V
Sbjct: 272 EESREALELLIELHRSGSVPSDSSFTSALSACANIGDVEIGRVIHSLAIKTGCQFNS-YV 330

Query: 352 QSALTDMYGKCNVIESSVAVFES--APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            + L  MY KC  +E    VF +   P R +    +++++ + +G+ + A+++F  M+  
Sbjct: 331 MNGLISMYAKCGNVEDGSHVFRTIRMPKRDVVSWTAIISAYVQAGHGEVALDLFLDMLAR 390

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           GI  +++T+++ L     SA  NLG+ +L    H    K GF++ + V  SL+  Y +CG
Sbjct: 391 GIKPNQLTVTSLL-----SACGNLGAIKLGEQFHALIFKLGFDTFLFVGNSLITMYFKCG 445

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           + E    VFE++P  +++ + +++ G ++NG+G+EA+ + E M   G++PD+++FL VL 
Sbjct: 446 Y-EDGFCVFEEMPEHDLITWNAVLVGCAQNGLGKEAIKIFEQMEVEGILPDQMSFLGVLC 504

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H+G+V EG   FNSM   YGI     HY+CM+D+LGRAG L +AE L++  P   D 
Sbjct: 505 ACSHAGLVDEGWAHFNSMTQKYGIMPLVYHYTCMVDLLGRAGYLSEAEALIENMPVKPDS 564

Query: 587 MMWSSLLRSCRVHGN 601
           ++W +LL +CR+H N
Sbjct: 565 VIWEALLGACRIHRN 579


>gi|359488559|ref|XP_002275581.2| PREDICTED: pentatricopeptide repeat-containing protein At3g26782,
           mitochondrial-like [Vitis vinifera]
          Length = 735

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 161/508 (31%), Positives = 278/508 (54%), Gaps = 16/508 (3%)

Query: 167 LFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           LF++  ++ N+ +WN ++          E LR ++ M+   ++PN  +F   ++ CS  +
Sbjct: 107 LFNKYVDKTNVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALL 166

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L  G+Q H   +  G+ + ++FV++ALVD YS CG L +A+  FD I   +++SW S++
Sbjct: 167 DLHSGRQAHQQALIFGF-EPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMI 225

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIR---------SFVEFLNFASRTGNVYFGKQIH 336
           + Y   D    AL L F+  L  +  S           + V  L+  SR       + +H
Sbjct: 226 TGYVQNDDAHRAL-LLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVH 284

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G++ K GF+ G + V++ L D Y KC  +  S  VF+    R +   NS++     +G  
Sbjct: 285 GFLIKRGFE-GDLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMS 343

Query: 397 KDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
            +++E+F  MV +G I  + VTLS  L A + S S  LG C  +H   IK G ESN+ V 
Sbjct: 344 TESMEIFHRMVKDGEINYNAVTLSAVLLACAHSGSQRLGKC--IHDQVIKMGLESNVFVG 401

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            S++D Y +CG +E++ + F+++   NV  +++++ GY  +G  +EAL++   M   G+ 
Sbjct: 402 TSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVK 461

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P+ +TF+ VLA C+H+G+++EG   F +M   + ++   +HY CM+D+LGRAG L +A +
Sbjct: 462 PNYITFVSVLAACSHAGLLEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEAFD 521

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L++      D ++W +LL +CR+H N  +G   A  L EL+P +   Y  +SN Y++ G 
Sbjct: 522 LIKGMKLRPDFVVWGALLGACRMHKNVDLGEISARKLFELDPKNCGYYVLLSNIYADAGR 581

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEVN 663
           +E   ++R       L +  G SL+++ 
Sbjct: 582 WEDVERMRILMKNSGLVKPPGFSLVDIK 609



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 124/513 (24%), Positives = 234/513 (45%), Gaps = 50/513 (9%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           ++ ++N +I+   +     +AL  +  M    +K + STF   +  CS       G Q H
Sbjct: 116 NVFSWNSVIAELARSGDSVEALRAFSSMRKLSLKPNRSTFPCAIKSCSALLDLHSGRQAH 175

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            + L  GF  +L++ S LVD+Y + G    A  LFDE+  RN+ +W  M+  + +     
Sbjct: 176 QQALIFGFEPDLFVSSALVDMYSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAH 235

Query: 194 EVLRMYNKMKAE--GVEPNG------LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
             L ++ +   E  G E +G      ++   ++  CS        + +H  +IK G+ + 
Sbjct: 236 RALLLFKEFLVEESGSEGDGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGF-EG 294

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM- 304
           ++ V N L+D Y+ CG L  +++ FD +   DVISWNSI+++YA   +  +++E+F RM 
Sbjct: 295 DLGVENTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMV 354

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +      +  +    L   + +G+   GK IH  V K+G +  +V V +++ DMY KC  
Sbjct: 355 KDGEINYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLE-SNVFVGTSIIDMYCKCGK 413

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +E +   F+    ++++  ++++      G+ K+A+E+F  M   G+  + +T  + L A
Sbjct: 414 VEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAA 473

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            S             H   ++ G+    A+S                    E    P V 
Sbjct: 474 CS-------------HAGLLEEGWHWFKAMS-------------------HEFDVEPGVE 501

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +  +++   R G  +EA D+++ M  R   PD V +  +L  C     V  G++   S 
Sbjct: 502 HYGCMVDLLGRAGYLKEAFDLIKGMKLR---PDFVVWGALLGACRMHKNVDLGEI---SA 555

Query: 545 KSVYGIDADR-QHYSCMIDMLGRAGILDKAEEL 576
           + ++ +D     +Y  + ++   AG  +  E +
Sbjct: 556 RKLFELDPKNCGYYVLLSNIYADAGRWEDVERM 588



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 95/392 (24%), Positives = 188/392 (47%), Gaps = 39/392 (9%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-------NIYSSNRTIDD 53
           M    L P   T      +C++++ L S        Q + Q        +++ S+  +D 
Sbjct: 143 MRKLSLKPNRSTFPCAIKSCSALLDLHSGR------QAHQQALIFGFEPDLFVSSALVDM 196

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-- 111
           + K G L  A+ LFDE+  R++V++  +I+G  +     +AL L+ E +   ++ES S  
Sbjct: 197 YSKCGELRDARTLFDEISHRNIVSWTSMITGYVQNDDAHRALLLFKEFL---VEESGSEG 253

Query: 112 ---------TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                       SVLS CS     +    +H  ++  GF  +L + + L+D Y + G   
Sbjct: 254 DGEVCVDPIAMVSVLSACSRVSEKSITEGVHGFLIKRGFEGDLGVENTLMDAYAKCGELG 313

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGC 221
            +  +FD + ER++ +WN ++  + +     E + ++++M  +G +  N ++   ++  C
Sbjct: 314 VSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEINYNAVTLSAVLLAC 373

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +       GK +H  VIK+G ++ N+FV  +++D Y  CG +  A+K+FD +   +V SW
Sbjct: 374 AHSGSQRLGKCIHDQVIKMG-LESNVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSW 432

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIH 336
           +++V+ Y  +    +ALE+F+ M +   +P+  +FV  L   S  G +     +F    H
Sbjct: 433 SAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGLLEEGWHWFKAMSH 492

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +  + G +H        + D+ G+   ++ +
Sbjct: 493 EFDVEPGVEH-----YGCMVDLLGRAGYLKEA 519



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 66/243 (27%), Positives = 124/243 (51%), Gaps = 8/243 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-I 106
           N  +D + K G L  ++++FD M  RD++++N +I+   +     +++ ++  MV  G I
Sbjct: 300 NTLMDAYAKCGELGVSRRVFDGMAERDVISWNSIIAVYAQNGMSTESMEIFHRMVKDGEI 359

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +A T S+VL  C+++G    G  IH +V+ +G   N+++G+ ++D+Y + G    A  
Sbjct: 360 NYNAVTLSAVLLACAHSGSQRLGKCIHDQVIKMGLESNVFVGTSIIDMYCKCGKVEMARK 419

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
            FD + E+N+ +W+ M+  +       E L ++ +M   GV+PN ++F  ++  CS   L
Sbjct: 420 AFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMNMAGVKPNYITFVSVLAACSHAGL 479

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP----VDDVISWN 282
           L+EG      +     V+  +     +VD     G L EA   FD I       D + W 
Sbjct: 480 LEEGWHWFKAMSHEFDVEPGVEHYGCMVDLLGRAGYLKEA---FDLIKGMKLRPDFVVWG 536

Query: 283 SIV 285
           +++
Sbjct: 537 ALL 539



 Score = 69.7 bits (169), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 47/148 (31%), Positives = 75/148 (50%), Gaps = 8/148 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++     ID + K G +  A+K FD M  +++ +++ +++G G   H K+AL ++ EM 
Sbjct: 397 NVFVGTSIIDMYCKCGKVEMARKAFDRMREKNVKSWSAMVAGYGMHGHAKEALEVFYEMN 456

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF----GLNLYIGSPLVDLYMRM 158
             G+K +  TF SVL+ CS+AG   EG     + +S  F    G+  Y    +VDL  R 
Sbjct: 457 MAGVKPNYITFVSVLAACSHAGLLEEGWHWF-KAMSHEFDVEPGVEHY--GCMVDLLGRA 513

Query: 159 GPSVRALDLFDELPER-NLATWNLMLRA 185
           G    A DL   +  R +   W  +L A
Sbjct: 514 GYLKEAFDLIKGMKLRPDFVVWGALLGA 541


>gi|297734119|emb|CBI15366.3| unnamed protein product [Vitis vinifera]
          Length = 783

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 166/558 (29%), Positives = 297/558 (53%), Gaps = 7/558 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRV-LSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + +     +L  C        G ++H  V  S  F  +  + + ++ +Y   G    +  
Sbjct: 103 QRSEAMGVLLQACGQRKDIEVGRRLHEMVSASTQFCNDFVLNTRIITMYSMCGSPSDSRM 162

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGM 225
           +FD+L  +NL  WN ++ A+      ++ + +++++      +P+  +   +++ C+  +
Sbjct: 163 VFDKLRRKNLFQWNAIVSAYTRNELFEDAMSIFSELISVTEHKPDNFTLPCVIKACAGLL 222

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA-KKSFDFIPVDDVISWNSI 284
            L  G+ +H    K+  V  ++FV NAL+  Y  CG + EA K+ FD +    V SWN++
Sbjct: 223 DLGLGQIIHGMATKMDLVS-DVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNAL 281

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  YA       AL+L+ +M      P   +    L   SR  ++++G++IHG+  + G 
Sbjct: 282 LCGYAQNSDPRKALDLYLQMTDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGL 341

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
                 +  +L  +Y  C    ++  +F+    RSL   N ++     +G   +A+ +F 
Sbjct: 342 AVDPF-IGISLLSLYICCGKPFAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFR 400

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+ +GI   E+ +     A S  ++  LG  + LHC A+K+    +I VS S++D Y++
Sbjct: 401 QMLSDGIQPYEIAIMCVCGACSQLSALRLG--KELHCFALKAHLTEDIFVSSSIIDMYAK 458

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G I LS ++F+++   +V  +  I+ GY  +G G+EAL++ E M++ GL PD  TF  +
Sbjct: 459 GGCIGLSQRIFDRLREKDVASWNVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGI 518

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  C+H+G+V++G   FN M +++ I+   +HY+C++DMLGRAG +D A  L+++ PG  
Sbjct: 519 LMACSHAGLVEDGLEYFNQMLNLHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDP 578

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           D  +WSSLL SCR+HGN  +G +VAN L+ELEP     Y  +SN ++  G+++   ++R 
Sbjct: 579 DSRIWSSLLSSCRIHGNLGLGEKVANKLLELEPEKPENYVLISNLFAGSGKWDDVRRVRG 638

Query: 645 TALARKLTRDIGHSLIEV 662
                 L +D G S IEV
Sbjct: 639 RMKDIGLQKDAGCSWIEV 656



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 99/356 (27%), Positives = 177/356 (49%), Gaps = 3/356 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSA-KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +++  N  I  + K G +  A K++FD M  + + ++N L+ G  +   P++AL LY +M
Sbjct: 242 DVFVGNALIAMYGKCGLVEEAVKRVFDLMDTKTVSSWNALLCGYAQNSDPRKALDLYLQM 301

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G+     T  S+L  CS       G +IH   L  G  ++ +IG  L+ LY+  G  
Sbjct: 302 TDSGLDPDWFTIGSLLLACSRMKSLHYGEEIHGFALRNGLAVDPFIGISLLSLYICCGKP 361

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LFD +  R+L +WN+M+  + +   PDE + ++ +M ++G++P  ++   +   C
Sbjct: 362 FAAQVLFDGMEHRSLVSWNVMIAGYSQNGLPDEAINLFRQMLSDGIQPYEIAIMCVCGAC 421

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S    L  GK+LH   +K    + +IFV+++++D Y+  G +  +++ FD +   DV SW
Sbjct: 422 SQLSALRLGKELHCFALKAHLTE-DIFVSSSIIDMYAKGGCIGLSQRIFDRLREKDVASW 480

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N I++ Y  +    +ALELF +M     +P   +F   L   S  G V  G +    +  
Sbjct: 481 NVIIAGYGIHGRGKEALELFEKMLRLGLKPDDFTFTGILMACSHAGLVEDGLEYFNQMLN 540

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLHSGNI 396
           L      +   + + DM G+   I+ ++ + E  PG       +SL++S    GN+
Sbjct: 541 LHNIEPKLEHYTCVVDMLGRAGRIDDALRLIEEMPGDPDSRIWSSLLSSCRIHGNL 596


>gi|356577059|ref|XP_003556647.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 821

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 171/611 (27%), Positives = 325/611 (53%), Gaps = 11/611 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L  A+ +FD+    +    N +I+G  + +   +   L+  M S  I+ ++ T    L
Sbjct: 93  GFLGHARNVFDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFAL 152

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C++      G++I    +  GF L+LY+GS +V+  ++ G    A  +FD +PE+++ 
Sbjct: 153 KACTDLLDDEVGMEIIRAAVRRGFHLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVV 212

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            WN ++  + +     E ++M+ +M   G+ P+ ++   +++ C    L   G   HS+V
Sbjct: 213 CWNSIIGGYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYV 272

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           + LG  + ++FV  +LVD YS  G    A   FD +    +ISWN+++S Y    +I ++
Sbjct: 273 LALGMGN-DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPES 331

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
             LF R+          + V  +   S+T ++  G+ +H  + +   +   V + +A+ D
Sbjct: 332 YALFRRLVQSGSGFDSGTLVSLIRGCSQTSDLENGRILHSCIIRKELESHLV-LSTAIVD 390

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  I+ +  VF     +++    +++  L  +G  +DA+++F  M +E +  + VT
Sbjct: 391 MYSKCGAIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVT 450

Query: 418 LSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           L +      V   A+LGS    R +H   I+ G+  +  ++ +L+D Y++CG I  + ++
Sbjct: 451 LVSL-----VHCCAHLGSLTKGRTVHAHFIRHGYAFDAVITSALIDMYAKCGKIHSAEKL 505

Query: 475 FE-KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           F  +    +V+   S++ GY  +G GR AL +   MI+  L P++ TF+ +L  C+HSG+
Sbjct: 506 FNNEFHLKDVILCNSMIMGYGMHGHGRYALGVYSRMIEERLKPNQTTFVSLLTACSHSGL 565

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           V+EG+ +F+SM+  + +    +HY+C++D+  RAG L++A+EL++Q P      +  +LL
Sbjct: 566 VEEGKALFHSMERDHDVRPQHKHYACLVDLHSRAGRLEEADELVKQMPFQPSTDVLEALL 625

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
             CR H N  +G ++A+ L+ L+ ++  +Y  +SN Y+E  ++E    IR     + + +
Sbjct: 626 SGCRTHKNTNMGIQIADRLISLDYLNSGIYVMLSNIYAEARKWESVNYIRGLMRMQGMKK 685

Query: 654 DIGHSLIEVNS 664
             G+SLIEV +
Sbjct: 686 IPGYSLIEVGN 696



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 135/496 (27%), Positives = 257/496 (51%), Gaps = 11/496 (2%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           ++ S FSS+L   SN   + +   IH +++        ++ + L+ +Y  +G    A ++
Sbjct: 44  QAPSVFSSLLHQFSNTLIHVK--SIHAQIIKNWVSTESFLAAKLIRVYSDLGFLGHARNV 101

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD+      A  N M+  F    +  EV R++  M +  +E N  +  + ++ C+  +L 
Sbjct: 102 FDQCSLPETAVCNAMIAGFLRNQQHMEVPRLFRMMGSCDIEINSYTCMFALKACT-DLLD 160

Query: 228 DE-GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           DE G ++    ++ G+  ++++V +++V+F    G L +A+K FD +P  DV+ WNSI+ 
Sbjct: 161 DEVGMEIIRAAVRRGF-HLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIG 219

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y    L ++++++F  M     RPS  +    L    ++G    G   H YV  LG  +
Sbjct: 220 GYVQKGLFWESIQMFLEMIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGN 279

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V ++L DMY       S+  VF+S   RSL   N++++  + +G I ++  +F  +
Sbjct: 280 -DVFVLTSLVDMYSNLGDTGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRL 338

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           V  G G D  TL + ++    S +++L + R+LH C I+   ES++ +S +++D YS+CG
Sbjct: 339 VQSGSGFDSGTLVSLIRG--CSQTSDLENGRILHSCIIRKELESHLVLSTAIVDMYSKCG 396

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            I+ +  VF ++   NV+ +T+++ G S+NG   +AL +   M +  +  + VT + ++ 
Sbjct: 397 AIKQATIVFGRMGKKNVITWTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVH 456

Query: 527 GCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
            C H G + +G+ V  + ++  Y  DA     S +IDM  + G +  AE+L        D
Sbjct: 457 CCAHLGSLTKGRTVHAHFIRHGYAFDAVIT--SALIDMYAKCGKIHSAEKLFNNEFHLKD 514

Query: 586 CMMWSSLLRSCRVHGN 601
            ++ +S++    +HG+
Sbjct: 515 VILCNSMIMGYGMHGH 530



 Score =  184 bits (468), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 121/471 (25%), Positives = 243/471 (51%), Gaps = 8/471 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            L++Y  +  ++  VK G+L  A+K+FD MP +D+V +N +I G  +     +++ ++ E
Sbjct: 177 HLHLYVGSSMVNFLVKRGYLADAQKVFDGMPEKDVVCWNSIIGGYVQKGLFWESIQMFLE 236

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  G++ S  T +++L  C  +G    G+  H  VL+LG G ++++ + LVD+Y  +G 
Sbjct: 237 MIGGGLRPSPVTMANLLKACGQSGLKKVGMCAHSYVLALGMGNDVFVLTSLVDMYSNLGD 296

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
           +  A  +FD +  R+L +WN M+  + +     E   ++ ++   G   +  +   ++RG
Sbjct: 297 TGSAALVFDSMCSRSLISWNAMISGYVQNGMIPESYALFRRLVQSGSGFDSGTLVSLIRG 356

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS    L+ G+ LHS +I+   ++ ++ ++ A+VD YS CG++ +A   F  +   +VI+
Sbjct: 357 CSQTSDLENGRILHSCIIR-KELESHLVLSTAIVDMYSKCGAIKQATIVFGRMGKKNVIT 415

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +++   +      DAL+LF +MQ  +   +  + V  ++  +  G++  G+ +H +  
Sbjct: 416 WTAMLVGLSQNGYAEDALKLFCQMQEEKVAANSVTLVSLVHCCAHLGSLTKGRTVHAHFI 475

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDA 399
           + G+   +V + SAL DMY KC  I S+  +F +    + +  CNS++      G+ + A
Sbjct: 476 RHGYAFDAV-ITSALIDMYAKCGKIHSAEKLFNNEFHLKDVILCNSMIMGYGMHGHGRYA 534

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + ++  M++E +  ++ T  + L A S S     G   L H                 L+
Sbjct: 535 LGVYSRMIEERLKPNQTTFVSLLTACSHSGLVEEGKA-LFHSMERDHDVRPQHKHYACLV 593

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGREALDML 506
           D +SR G +E + ++ +++P  P+     ++++G   +    MG +  D L
Sbjct: 594 DLHSRAGRLEEADELVKQMPFQPSTDVLEALLSGCRTHKNTNMGIQIADRL 644


>gi|297799986|ref|XP_002867877.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297313713|gb|EFH44136.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 760

 Score =  271 bits (692), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 179/630 (28%), Positives = 311/630 (49%), Gaps = 51/630 (8%)

Query: 43  NIYSSNRTIDDFVKSGHL-NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           NI+  N  +  + K G + +   ++F+ +   + V++  +ISG  +     +A++++  M
Sbjct: 158 NIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLM 217

Query: 102 VSHGIKESASTFSSVLSVC-------SNAGFYTE--GIQIHCRVLSLGFGLNLYIGSPLV 152
              G++      S++LS+        S +  Y    G QIH   L  GF   L++ + L+
Sbjct: 218 CEKGVQVDCVCLSNILSISVPREGCDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLL 277

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           ++Y +      A  +F E+PE N+ +WN+M+  F +  R D+ +    +M+  G EPN +
Sbjct: 278 EIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEV 337

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  C                                  F S  G +   ++ F+ 
Sbjct: 338 TCISILGAC----------------------------------FRS--GDVETGRRIFNT 361

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           IP   V +WN+++S Y++Y+   +A+  F +MQ    +P   +    L+  +R   +  G
Sbjct: 362 IPQPSVSAWNAMLSGYSNYEHYEEAINNFRQMQFQNLKPDRTTLSVILSSCARLRFLEGG 421

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLL 391
           KQIHG   +      S H+ S L  +Y +C  +E    +F+       + C NS+++ L 
Sbjct: 422 KQIHGVAIRTETSEDS-HIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLR 480

Query: 392 HSGNIKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
            +     A+ +F  M    + L +E T +  L + S   S   G  R  H   +KSG+ S
Sbjct: 481 RNTLDTKALMLFRRMHQTSVLLPNETTYAIVLGSCSRLCSLVHG--RQFHGQVVKSGYVS 538

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           +  V  ++ D Y +CG IE + Q F+ +   N V +  +++GY+ NG G EA+D+   MI
Sbjct: 539 DSFVETAVTDMYCKCGEIESARQFFDTVSRKNTVIWNEMIHGYAHNGRGDEAVDLYREMI 598

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  PD +TF+ VL  C+HSG+V  G  + +SM+  +GI+ +  HY C++D LGRAG L
Sbjct: 599 SAGEKPDGITFVSVLTACSHSGLVDTGLEILSSMQRDHGIEPELDHYICIVDCLGRAGRL 658

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           + AE L + TP     ++W  LL SCRV+G+  + RRVA  LM L+P + A Y  +SN Y
Sbjct: 659 EDAETLAEATPYKSSSVLWEILLSSCRVYGDVSLARRVAEKLMHLDPQNSAAYVLLSNTY 718

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           S + +++ +  ++E     ++ +  GHS I
Sbjct: 719 SSVRQWDDAAALQELMNKNRVHKTPGHSWI 748



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 138/579 (23%), Positives = 260/579 (44%), Gaps = 64/579 (11%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++YS N  +    K G L  A ++FD MP RD+V++N +IS   +    ++AL +Y  MV
Sbjct: 57  DVYSWNAFLTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMV 116

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G   S  T +SVLS CS       G++ H   +  G   N+++G+ L+ +Y + G  V
Sbjct: 117 GDGFLPSRFTLASVLSACSKVQDGVIGMRCHGVAVKTGLDKNIFVGNALLSMYAKCGFMV 176

Query: 163 R-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE------PNGLSFC 215
              + +F+ L E N  ++  ++      ++  E + M+  M  +GV+       N LS  
Sbjct: 177 DYGVRVFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSIS 236

Query: 216 YMVRGCS-----IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
               GC       G +L  GKQ+HS  ++ G+V   + + N+L++ Y+    +  A+  F
Sbjct: 237 VPREGCDSLSEIYGNVL--GKQIHSLALRRGFVG-ELHLNNSLLEIYAKNKDMNGAELIF 293

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
             +P  +V+SWN +++ +        ++E   RM+     P+  + +  L    R+G+V 
Sbjct: 294 TEMPEVNVVSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVE 353

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G++I                                    F + P  S+   N++++  
Sbjct: 354 TGRRI------------------------------------FNTIPQPSVSAWNAMLSGY 377

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
            +  + ++A+  F  M  + +  D  TLS  L   S +    L   + +H  AI++    
Sbjct: 378 SNYEHYEEAINNFRQMQFQNLKPDRTTLSVILS--SCARLRFLEGGKQIHGVAIRTETSE 435

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEK-IPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           +  +   L+  YS C  +E+   +F+  I   ++ C+ S+++G  RN +  +AL +   M
Sbjct: 436 DSHIVSGLIAVYSECEKMEICECIFDDCINELDIACWNSMISGLRRNTLDTKALMLFRRM 495

Query: 510 IQRG-LIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            Q   L+P++ T+  VL  C+    +V   Q     +KS Y  D+  +  + + DM  + 
Sbjct: 496 HQTSVLLPNETTYAIVLGSCSRLCSLVHGRQFHGQVVKSGYVSDSFVE--TAVTDMYCKC 553

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
           G ++ A +    T    + ++W+ +     +HG    GR
Sbjct: 554 GEIESARQFF-DTVSRKNTVIWNEM-----IHGYAHNGR 586



 Score =  112 bits (279), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 100/451 (22%), Positives = 178/451 (39%), Gaps = 98/451 (21%)

Query: 140 GFGLNLYIGSPLVDLYMRMGPSVRALDLFDE----------------------------- 170
           G   + Y+ + L+DLY+  G    A  LFDE                             
Sbjct: 22  GLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAFLTFRCKVGDLEEACEVF 81

Query: 171 --LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
             +PER++ +WN M+         ++ L +Y +M  +G  P+  +   ++  CS      
Sbjct: 82  DGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSRFTLASVLSACSKVQDGV 141

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE-AKKSFDFIPVDDVISWNSIVSI 287
            G + H   +K G +D NIFV NAL+  Y+ CG +++   + F+ +   + +S+ +++S 
Sbjct: 142 IGMRCHGVAVKTG-LDKNIFVGNALLSMYAKCGFMVDYGVRVFESLSEPNEVSFTTVISG 200

Query: 288 YADYDLIFDALELFFRMQLCRK------------------RPSIRSFVEFLNFASRTGNV 329
            A  + + +A+ +F  M  C K                  R    S  E        GNV
Sbjct: 201 LARENKVLEAVHMFRLM--CEKGVQVDCVCLSNILSISVPREGCDSLSEIY------GNV 252

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
             GKQIH    + GF  G +H+ ++L ++Y K   +  +  +F   P  ++   N ++  
Sbjct: 253 -LGKQIHSLALRRGF-VGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNVVSWNIMIAG 310

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
                    ++E    M D G                                     FE
Sbjct: 311 FGQEYRSDKSIEYLKRMRDSG-------------------------------------FE 333

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            N     S++ A  R G +E   ++F  IP P+V  + ++++GYS      EA++    M
Sbjct: 334 PNEVTCISILGACFRSGDVETGRRIFNTIPQPSVSAWNAMLSGYSNYEHYEEAINNFRQM 393

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
             + L PD+ T   +L+ C     ++ G+ +
Sbjct: 394 QFQNLKPDRTTLSVILSSCARLRFLEGGKQI 424



 Score = 66.2 bits (160), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 80/361 (22%), Positives = 148/361 (40%), Gaps = 78/361 (21%)

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           GN Y    +  Y  +    +   ++ + L D+Y +    + +  +F+    R +   N+ 
Sbjct: 5   GNKYLASLLRCYRDERTGLNSDTYLCNRLLDLYIEFGDGDYARKLFDEMSLRDVYSWNAF 64

Query: 387 MTSLLHSGNIKDAVEMF-------------------------------GFMVDEGIGLDE 415
           +T     G++++A E+F                               G MV +G     
Sbjct: 65  LTFRCKVGDLEEACEVFDGMPERDVVSWNNMISVLVRKGFEEKALDVYGRMVGDGFLPSR 124

Query: 416 VTLSTTLKALSVSASANLG-SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH-IELSHQ 473
            TL++ L A S      +G  C   H  A+K+G + NI V  +L+  Y++CG  ++   +
Sbjct: 125 FTLASVLSACSKVQDGVIGMRC---HGVAVKTGLDKNIFVGNALLSMYAKCGFMVDYGVR 181

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA------G 527
           VFE +  PN V FT++++G +R     EA+ M  +M ++G+  D V    +L+      G
Sbjct: 182 VFESLSEPNEVSFTTVISGLARENKVLEAVHMFRLMCEKGVQVDCVCLSNILSISVPREG 241

Query: 528 CN--------------HSGMVKEGQL----VFNSMKSVYGIDADRQ-------------- 555
           C+              HS  ++ G +    + NS+  +Y  + D                
Sbjct: 242 CDSLSEIYGNVLGKQIHSLALRRGFVGELHLNNSLLEIYAKNKDMNGAELIFTEMPEVNV 301

Query: 556 -HYSCMIDMLGRAGILDKAEELLQQTPGGG---DCMMWSSLLRSCRVHGNEIIGRRVANI 611
             ++ MI   G+    DK+ E L++    G   + +   S+L +C   G+   GRR+ N 
Sbjct: 302 VSWNIMIAGFGQEYRSDKSIEYLKRMRDSGFEPNEVTCISILGACFRSGDVETGRRIFNT 361

Query: 612 L 612
           +
Sbjct: 362 I 362


>gi|347954538|gb|AEP33769.1| organelle transcript processing 82, partial [Olimarabidopsis
           pumila]
          Length = 710

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/534 (28%), Positives = 282/534 (52%), Gaps = 37/534 (6%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +FD + E  L  WN M R     S P   L++Y  M + G+ PN  +F ++++ C+ 
Sbjct: 56  AISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAK 115

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS-------------- 269
                EG+QLH  V+K G+ D+++++  +L+  Y   G L +A+K               
Sbjct: 116 SXAFKEGQQLHGQVLKFGF-DLDLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTA 174

Query: 270 -----------------FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
                            FD IPV DV+SWN+ +S YA+     +ALELF +M     RP 
Sbjct: 175 LITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPD 234

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             + V  L+  +++G++  G+Q+H ++   GF   ++ + +AL D+Y KC  +E++  +F
Sbjct: 235 ESTMVTVLSACAQSGSIELGRQVHSWINDHGFG-XNLKIVNALIDLYSKCGELETACGLF 293

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           +    + +   N+L+    H    K+A+ +F  M+  G   ++VT+ + L A +   + +
Sbjct: 294 QGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAID 353

Query: 433 LGSCRLLHCCAIK--SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           +G  R +H    K   G  +  ++  SL+D Y++CG IE + QVF+ + + ++  + +++
Sbjct: 354 IG--RWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSWNAMI 411

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            G++ +G    A D+   M + G+ PD +TF+ +L+ C+HSGM+  G+ +F SM   Y +
Sbjct: 412 FGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTRDYKL 471

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
               +HY CMID+ G +G+  +AE+++       D ++W SLL++C++HGN  +G   A 
Sbjct: 472 MPKLEHYGCMIDLXGHSGLFKEAEKMINTMEMEPDGVIWCSLLKACKMHGNVELGESYAQ 531

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            L+++EP +   Y  +SN Y+    +    + R     + + +  G S IE++S
Sbjct: 532 NLIKIEPENPGSYVLLSNIYATAERWNEVAKTRALLNDKGMKKVPGCSSIEIDS 585



 Score =  178 bits (451), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 123/426 (28%), Positives = 206/426 (48%), Gaps = 38/426 (8%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ ++  V S H +    A  +FD +    ++ +N +  G      P  AL LY  M
Sbjct: 35  YALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFRGHALSSDPVSALKLYVCM 94

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP- 160
           VS G+  ++ TF  +L  C+ +  + EG Q+H +VL  GF L+LYI + L+ +Y++ G  
Sbjct: 95  VSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDLDLYIHTSLISMYVQNGRL 154

Query: 161 ----------------SVRAL--------------DLFDELPERNLATWNLMLRAFCELS 190
                           S  AL               +FDE+P +++ +WN  +  + E  
Sbjct: 155 EDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETG 214

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E L ++ KM    V P+  +   ++  C+    ++ G+Q+HS +   G+   N+ + 
Sbjct: 215 NYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGF-GXNLKIV 273

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+D YS CG L  A   F  +   DVISWN+++  Y   +L  +AL LF  M    ++
Sbjct: 274 NALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEK 333

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCNVIESS 368
           P+  + +  L+  +  G +  G+ IH Y+ K   G  + S  ++++L DMY KC  IE++
Sbjct: 334 PNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS-LRTSLIDMYAKCGDIEAA 392

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VF+S   RSL   N+++      G    A ++F  M   GI  D++T    L A S S
Sbjct: 393 QQVFDSMLNRSLSSWNAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHS 452

Query: 429 ASANLG 434
              +LG
Sbjct: 453 GMLDLG 458



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 86/300 (28%), Positives = 158/300 (52%), Gaps = 1/300 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G + SA K+FDE+P +D+V++N  ISG  +  + K+AL L+ +M+
Sbjct: 168 DVVSYTALITGYASRGXIESAHKMFDEIPVKDVVSWNAXISGYAETGNYKEALELFKKMM 227

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++   ST  +VLS C+ +G    G Q+H  +   GFG NL I + L+DLY + G   
Sbjct: 228 KTNVRPDESTMVTVLSACAQSGSIELGRQVHSWINDHGFGXNLKIVNALIDLYSKCGELE 287

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  L  +++ +WN ++  +  ++   E L ++  M   G +PN ++   ++  C+
Sbjct: 288 TACGLFQGLSNKDVISWNTLIGGYTHMNLYKEALLLFQDMLRSGEKPNDVTMLSILSACA 347

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++ K L  V     +  +L+D Y+ CG +  A++ FD +    + SW
Sbjct: 348 HLGAIDIGRWIHVYIDKRLKGVTNASSLRTSLIDMYAKCGDIEAAQQVFDSMLNRSLSSW 407

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +     A ++F RM+     P   +FV  L+  S +G +  G+ I   +T+
Sbjct: 408 NAMIFGFAMHGRANAAFDIFSRMRKNGIEPDDITFVGLLSACSHSGMLDLGRHIFRSMTR 467



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 185/411 (45%), Gaps = 56/411 (13%)

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSAC------GSLIEAKKSFDFIPVDDVISWNSIVS 286
           +H+ +IK G  + N     AL      C        L  A   FD I    ++ WN++  
Sbjct: 21  IHAQMIKTGLHNTNY----ALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTMFR 76

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD- 345
            +A       AL+L+  M      P+  +F   L   +++     G+Q+HG V K GFD 
Sbjct: 77  GHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLKFGFDL 136

Query: 346 -----------------------------HGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
                                        H  V   +AL   Y     IES+  +F+  P
Sbjct: 137 DLYIHTSLISMYVQNGRLEDAQKVXDKSSHRDVVSYTALITGYASRGXIESAHKMFDEIP 196

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
            + +   N+ ++    +GN K+A+E+F  M+   +  DE T+ T L A + S S  LG  
Sbjct: 197 VKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSACAQSGSIELG-- 254

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           R +H      GF  N+ +  +L+D YS+CG +E +  +F+ + + +V+ + +++ GY+  
Sbjct: 255 RQVHSWINDHGFGXNLKIVNALIDLYSKCGELETACGLFQGLSNKDVISWNTLIGGYTHM 314

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQ 555
            + +EAL + + M++ G  P+ VT L +L+ C H G +  G+ +   + K + G+     
Sbjct: 315 NLYKEALLLFQDMLRSGEKPNDVTMLSILSACAHLGAIDIGRWIHVYIDKRLKGVTNASS 374

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM------WSSLLRSCRVHG 600
             + +IDM  + G ++ A+++        D M+      W++++    +HG
Sbjct: 375 LRTSLIDMYAKCGDIEAAQQVF-------DSMLNRSLSSWNAMIFGFAMHG 418



 Score = 56.2 bits (134), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 47/236 (19%), Positives = 108/236 (45%), Gaps = 8/236 (3%)

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE---LSHQVFEKIPSPNVVCFTSI 489
           L S R++H   IK+G  +       L++      H +    +  VF+ I  P ++ + ++
Sbjct: 15  LQSLRIIHAQMIKTGLHNTNYALSKLLEXCVLSPHFDGLPYAISVFDTIQEPXLLIWNTM 74

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
             G++ +     AL +   M+  GL+P+  TF  +L  C  S   KEGQ +   +   +G
Sbjct: 75  FRGHALSSDPVSALKLYVCMVSLGLLPNSYTFPFLLKSCAKSXAFKEGQQLHGQVLK-FG 133

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
            D D   ++ +I M  + G L+ A+++  ++    D + +++L+      G      ++ 
Sbjct: 134 FDLDLYIHTSLISMYVQNGRLEDAQKVXDKS-SHRDVVSYTALITGYASRGXIESAHKMF 192

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           +   E+   D   ++   + Y+E G ++ ++++ +  +   +  D    +  +++C
Sbjct: 193 D---EIPVKDVVSWNAXISGYAETGNYKEALELFKKMMKTNVRPDESTMVTVLSAC 245


>gi|347954518|gb|AEP33759.1| organelle transcript processing 82, partial [Brassica oleracea]
          Length = 691

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 160/533 (30%), Positives = 279/533 (52%), Gaps = 34/533 (6%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +F+   E NL  WN MLR     S     L MY +M + G  PN  +F ++++ C+ 
Sbjct: 36  AVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRMVSXGHVPNAYTFPFLLKSCAK 95

Query: 224 GMLLDEGKQLHSHVIKLG-WVD-------VNIFVAN----------------------AL 253
               +EG+Q+H+ V+KLG  +D       ++++  N                      AL
Sbjct: 96  SKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRLEDARKVFDXSSQRDVVSCTAL 155

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +  Y++ G +  A+K FD I   DV+SWN++++ Y +     +ALELF  M     RP  
Sbjct: 156 ITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKEMMRTNVRPDE 215

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            + V  L+  +++G++  G++IH  V        S+ + +A   +Y KC  +E +  +FE
Sbjct: 216 GTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCGDVEIASGLFE 275

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
               + +   N+L+    H    K+A+ +F  M+  G   ++VT+ + L A +   + ++
Sbjct: 276 GLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLPACAHLGAIDI 335

Query: 434 GSCRLLHCCAIK--SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           G  R +H    K   G  +  A+  SL+D Y++CG IE +HQVF  +   ++  + +++ 
Sbjct: 336 G--RWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSLSSWNAMIF 393

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G++ +G    A D+   M + G+ PD +T + +L+ C+HSG++  G+ +F S+   Y I 
Sbjct: 394 GFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKSVTQDYNIT 453

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611
              +HY CMID+LG AG+  +AEE++   P   D ++W SLL++C++HGN  +    A  
Sbjct: 454 PKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCSLLKACKMHGNLELAESFAQK 513

Query: 612 LMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           LME+EP +   Y  +SN Y+  G +E   +IRE    + + +  G S IE++S
Sbjct: 514 LMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGMKKVPGCSSIEIDS 566



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 135/540 (25%), Positives = 238/540 (44%), Gaps = 71/540 (13%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ ++  V S H +    A  +F+     +++ +N ++ G          L +Y  M
Sbjct: 15  YALSKLLELCVVSPHFDGLPYAVSVFETXQEPNLLIWNTMLRGLASSSDLVSPLEMYVRM 74

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP- 160
           VS G   +A TF  +L  C+ +  + EG QIH +V+ LG  L+ Y  + L+ +Y R G  
Sbjct: 75  VSXGHVPNAYTFPFLLKSCAKSKTFEEGRQIHAQVMKLGCELDRYAHTSLISMYARNGRL 134

Query: 161 -----------------------------SVR-ALDLFDELPERNLATWNLMLRAFCELS 190
                                         VR A  +FD + ER++ +WN M+  + E  
Sbjct: 135 EDARKVFDXSSQRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENC 194

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             +E L ++ +M    V P+  +   ++  C+    ++ G+++H+ V        ++ + 
Sbjct: 195 GYEEALELFKEMMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIV 254

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NA +  YS CG +  A   F+ +   DV+SWN+++  Y   +L  +AL LF  M    + 
Sbjct: 255 NAFIGLYSKCGDVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGES 314

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCNVIESS 368
           P+  + +  L   +  G +  G+ IH Y+ K   G  +GS  ++++L DMY KC  IE++
Sbjct: 315 PNDVTMLSVLPACAHLGAIDIGRWIHVYIDKRLKGVTNGSA-LRTSLIDMYAKCGDIEAA 373

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             VF S   +SL   N+++      G    A ++F  M   GI  D++TL   L A S S
Sbjct: 374 HQVFNSMMHKSLSSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHS 433

Query: 429 ASANLG-------------SCRLLHC-CAI----KSGF-------------ESNIAVSCS 457
              +LG             + +L H  C I     +G              E +  + CS
Sbjct: 434 GLLDLGRHIFKSVTQDYNITPKLEHYGCMIDLLGHAGLFKEAEEIIHMMPMEPDGVIWCS 493

Query: 458 LMDAYSRCGHIELSHQVFEK---IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           L+ A    G++EL+    +K   I   N   +  + N Y+  G   +   + EV+  +G+
Sbjct: 494 LLKACKMHGNLELAESFAQKLMEIEPENSGSYVLLSNIYATAGRWEDVARIREVLNGKGM 553



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 83/303 (27%), Positives = 154/303 (50%), Gaps = 2/303 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q ++ S    I  +   G + SA+K+FD +  RD+V++N +I+G  +    ++AL L+ E
Sbjct: 146 QRDVVSCTALITGYASRGDVRSARKVFDXITERDVVSWNAMITGYVENCGYEEALELFKE 205

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMG 159
           M+   ++    T  SVLS C+ +G    G +IH  V    GFG +L I +  + LY + G
Sbjct: 206 MMRTNVRPDEGTLVSVLSACAQSGSIELGREIHTLVDDHHGFGSSLKIVNAFIGLYSKCG 265

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF+ L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++ 
Sbjct: 266 DVEIASGLFEGLSCKDVVSWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSVLP 325

Query: 220 GCSIGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
            C+    +D G+ +H ++ K L  V     +  +L+D Y+ CG +  A + F+ +    +
Sbjct: 326 ACAHLGAIDIGRWIHVYIDKRLKGVTNGSALRTSLIDMYAKCGDIEAAHQVFNSMMHKSL 385

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            SWN+++  +A +     A +LF RM+     P   + V  L+  S +G +  G+ I   
Sbjct: 386 SSWNAMIFGFAMHGRANAAFDLFSRMRKNGIEPDDITLVGLLSACSHSGLLDLGRHIFKS 445

Query: 339 VTK 341
           VT+
Sbjct: 446 VTQ 448


>gi|255558480|ref|XP_002520265.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223540484|gb|EEF42051.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 681

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 188/680 (27%), Positives = 316/680 (46%), Gaps = 107/680 (15%)

Query: 47  SNRTIDDFVK-SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           +NR +  + +  G +  A  LFDEMP R+  ++N +I G  +    +++L L+D M    
Sbjct: 44  ANRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQK- 102

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
                                                 N Y  + ++  + + G    A 
Sbjct: 103 --------------------------------------NDYSWNVVISGFAKAGELDVAK 124

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN-GLSFCY--MVRGCS 222
            LF+E+P RN   WN M+  +       E + ++ ++ +  +E + G +F    ++  C+
Sbjct: 125 KLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACA 184

Query: 223 IGMLLDEGKQLHSHVI-------------------KLGWVD-----------VNIFVANA 252
               ++ GKQ+H+ ++                   K G +D           V+ F  +A
Sbjct: 185 DLGAIEYGKQVHARILMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDFSLSA 244

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L+  Y+ CG + +A + F        + WNS++S Y +      A  L   M+  R +  
Sbjct: 245 LIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQVD 304

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN--------- 363
             +    L+  S TGN  + KQ+HGYV K+G    SV V SA  D Y KC          
Sbjct: 305 SSTITVILSACSSTGNAQYAKQMHGYVCKVGLID-SVIVASAFIDAYSKCRNPNDACKLF 363

Query: 364 ----------------------VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                                  I  +  +FE+ P +SL   NS++  L  +    +A++
Sbjct: 364 SELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALD 423

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +FG M    + +D  +L++ + A +  +S  LG    +   AI +G ES+ AVS SL+D 
Sbjct: 424 VFGKMNKLDLRMDRFSLASVISACACISSLELG--EQVFARAIITGLESDQAVSTSLVDF 481

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +CG IE   ++F+ +   + V + S++ GY+ NG G E L +   M Q GL P  +TF
Sbjct: 482 YCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLETLTLFNEMKQAGLRPTDITF 541

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
             VL+ C+H G+V+EG+  FN MK  Y ID   +HYSCM+D+  RAG L +A  L++  P
Sbjct: 542 TGVLSACDHCGLVEEGRKWFNIMKYDYHIDPGIEHYSCMVDLFARAGCLKEALNLVEHMP 601

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              DC MWSS+LR C  HG++ +G++VA  +++L P   + Y Q+S  ++  G++E S  
Sbjct: 602 FEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQLNPESSSAYVQLSGIFATSGDWESSAL 661

Query: 642 IRETALARKLTRDIGHSLIE 661
           +R+    +++ +  G S  +
Sbjct: 662 VRKIMTEKQVKKHPGFSWAD 681



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 128/554 (23%), Positives = 237/554 (42%), Gaps = 71/554 (12%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ N YS N  I  F K+G L+ AKKLF+EMP R+ V +N +I G  +    ++A+ L+ 
Sbjct: 100 PQKNDYSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWNSMIHGYARNGFAREAVGLFK 159

Query: 100 EMVSHGIKES-ASTF--SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           E+ S+ +++S   TF  +SV+  C++ G    G Q+H R+L     L+  + S L++LY 
Sbjct: 160 ELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARILMDDVELDSVLISSLINLYA 219

Query: 157 RMG---PSVRALDLFDELPERNLAT----------------------------WNLMLRA 185
           + G    +   L + DE+ + +L+                             WN ++  
Sbjct: 220 KCGHLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAVRIFRTKSNPCFVVWNSLISG 279

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           +       +   + N+MK   V+ +  +   ++  CS        KQ+H +V K+G +D 
Sbjct: 280 YVNNHEEMKAFALVNEMKNNRVQVDSSTITVILSACSSTGNAQYAKQMHGYVCKVGLID- 338

Query: 246 NIFVANALVDFYSA-------------------------------CGSLIEAKKSFDFIP 274
           ++ VA+A +D YS                                CG + +AK  F+ +P
Sbjct: 339 SVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMP 398

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
              +ISWNSI+   A      +AL++F +M     R    S    ++  +   ++  G+Q
Sbjct: 399 SKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQ 458

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +       G +     V ++L D Y KC  IE+   +F+S         NS++     +G
Sbjct: 459 VFARAIITGLESDQA-VSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNG 517

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
              + + +F  M   G+   ++T +  L A         G  +  +        +  I  
Sbjct: 518 YGLETLTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGR-KWFNIMKYDYHIDPGIEH 576

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
              ++D ++R G ++ +  + E +P   +   ++S++ G   +G       + + +IQ  
Sbjct: 577 YSCMVDLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVAHGDKDLGKKVAQQIIQ-- 634

Query: 514 LIPDKVTFLCVLAG 527
           L P+  +    L+G
Sbjct: 635 LNPESSSAYVQLSG 648



 Score =  102 bits (254), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 69/283 (24%), Positives = 137/283 (48%), Gaps = 18/283 (6%)

Query: 28  SSLLLDSYCQ---PNPQLNIYSS---------NRTIDDFVKSGHLNSAKKLFDEMPARDM 75
           +S  +D+Y +   PN    ++S          N  I  +   G +  AK +F+ MP++ +
Sbjct: 343 ASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSMITAYCNCGRIRDAKNIFETMPSKSL 402

Query: 76  VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
           +++N +I G  +  +P +AL ++ +M    ++    + +SV+S C+       G Q+  R
Sbjct: 403 ISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDRFSLASVISACACISSLELGEQVFAR 462

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
            +  G   +  + + LVD Y + G       LFD + + +  +WN ML  +       E 
Sbjct: 463 AIITGLESDQAVSTSLVDFYCKCGFIENGRKLFDSMIKTDEVSWNSMLMGYATNGYGLET 522

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALV 254
           L ++N+MK  G+ P  ++F  ++  C    L++EG++   +++K  + +D  I   + +V
Sbjct: 523 LTLFNEMKQAGLRPTDITFTGVLSACDHCGLVEEGRKWF-NIMKYDYHIDPGIEHYSCMV 581

Query: 255 DFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---IYADYDL 293
           D ++  G L EA    + +P + D   W+S++     + D DL
Sbjct: 582 DLFARAGCLKEALNLVEHMPFEADCSMWSSVLRGCVAHGDKDL 624



 Score = 78.6 bits (192), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 100/502 (19%), Positives = 191/502 (38%), Gaps = 133/502 (26%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNSIV 285
           + +GKQLH   +K G ++  + +AN L+  Y+ C G++ +A   FD +P  +  SWN+++
Sbjct: 21  IHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNLFDEMPERNCFSWNTMI 80

Query: 286 SIYADYDLIFDALELFFRMQLCR------------KRPSIRSFVEFLNFASRTGNVYFGK 333
             Y        +L+LF  M                K   +    +  N   R   V +  
Sbjct: 81  EGYMRVGDKERSLKLFDLMPQKNDYSWNVVISGFAKAGELDVAKKLFNEMPRRNGVAWNS 140

Query: 334 QIHGYVTKLGF----------------------------------DHGS------VHVQ- 352
            IHGY  + GF                                  D G+      VH + 
Sbjct: 141 MIHGY-ARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARI 199

Query: 353 ------------SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
                       S+L ++Y KC  ++++  V +          ++L+    + G + DAV
Sbjct: 200 LMDDVELDSVLISSLINLYAKCGHLDTANYVLKMMDEVDDFSLSALIMGYANCGRMSDAV 259

Query: 401 EMF----------------GF---------------MVDEGIGLDEVTLSTTLKALSVSA 429
            +F                G+               M +  + +D  T++  L A S + 
Sbjct: 260 RIFRTKSNPCFVVWNSLISGYVNNHEEMKAFALVNEMKNNRVQVDSSTITVILSACSSTG 319

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR------------------------- 464
           +A     + +H    K G   ++ V+ + +DAYS+                         
Sbjct: 320 NAQYA--KQMHGYVCKVGLIDSVIVASAFIDAYSKCRNPNDACKLFSELKAYDTVLLNSM 377

Query: 465 ------CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
                 CG I  +  +FE +PS +++ + SI+ G ++N    EALD+   M +  L  D+
Sbjct: 378 ITAYCNCGRIRDAKNIFETMPSKSLISWNSIIVGLAQNAYPLEALDVFGKMNKLDLRMDR 437

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            +   V++ C     ++ G+ VF +   + G+++D+   + ++D   + G ++   +L  
Sbjct: 438 FSLASVISACACISSLELGEQVF-ARAIITGLESDQAVSTSLVDFYCKCGFIENGRKLFD 496

Query: 579 QTPGGGDCMMWSSLLRSCRVHG 600
                 D + W+S+L     +G
Sbjct: 497 SMI-KTDEVSWNSMLMGYATNG 517



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 53/270 (19%), Positives = 117/270 (43%), Gaps = 46/270 (17%)

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC-NVIESSVAV 371
           +RS    L   +   +++ GKQ+H    K G  + +V + + L  MY +C   +  +  +
Sbjct: 5   LRSLARLLQSLNTHSSIHQGKQLHLLFLKKGLINATVSLANRLLQMYARCGGTMTDAHNL 64

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F+  P R+    N+++   +  G+ + ++++F  M                         
Sbjct: 65  FDEMPERNCFSWNTMIEGYMRVGDKERSLKLFDLMPQ----------------------- 101

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
                        K+ +  N+ +S      +++ G ++++ ++F ++P  N V + S+++
Sbjct: 102 -------------KNDYSWNVVIS-----GFAKAGELDVAKKLFNEMPRRNGVAWNSMIH 143

Query: 492 GYSRNGMGREALDMLEVMIQRGL---IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           GY+RNG  REA+ + + +    L     D      V+  C   G ++ G+ V   +  + 
Sbjct: 144 GYARNGFAREAVGLFKELNSNPLEKSCGDTFVLASVIGACADLGAIEYGKQVHARIL-MD 202

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            ++ D    S +I++  + G LD A  +L+
Sbjct: 203 DVELDSVLISSLINLYAKCGHLDTANYVLK 232


>gi|302801247|ref|XP_002982380.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
 gi|300149972|gb|EFJ16625.1| hypothetical protein SELMODRAFT_447 [Selaginella moellendorffii]
          Length = 730

 Score =  270 bits (691), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 164/626 (26%), Positives = 322/626 (51%), Gaps = 18/626 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P    I +    C+    L+  + + +    P+ + +++     ++ + K G +  A+ +
Sbjct: 98  PNEMVIVSTLAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCGAIEQARAV 157

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD+MP +D+V++  +I+   +    +QAL   + M+   ++ +  TF + ++ CS+  F 
Sbjct: 158 FDQMPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFL 217

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G +IH  V+ LG   ++ I + LV +Y +   +  AL +F  + +RN  +WN M+ AF
Sbjct: 218 DRGRKIHAAVIDLGLHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAF 277

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV- 245
              ++    + +++ M  EG++P+ +SF  ++  CS    L   K++HS  ++L  V   
Sbjct: 278 AASAQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQ-LELAAVHSP 336

Query: 246 -NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++ V N+LV  Y+ CG L  A++ F  IP  +V+SW ++++ Y  +     ALEL+ +M
Sbjct: 337 PDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGSKALELYDKM 396

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                +P     +  +   S  G+V   +++H  V    F    + +Q+AL +MY +C  
Sbjct: 397 VGQSIQPDSVVLLNVIYAGSLVGDVGLARKLHARVASSSF-MLKIQIQNALINMYARCGS 455

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT--- 421
           +E +  VF+    ++L   N++M S +  G  ++A+ +F  M        E  L ++   
Sbjct: 456 LEEARRVFDGIERKNLVSWNAMMGSYVQHGYDEEAIALFSEMKTGNSKAMESGLRSSPDC 515

Query: 422 -LKALSVSASANLGSC---RLLHC--CAIK----SGFESNIAVSCSLMDAYSRCGHIELS 471
            +  + + A A LG     R +H   CA+     +G  +N+ +  +L+  Y+RCG +  +
Sbjct: 516 IMAVILLCAHAGLGKLAEGRCIHAELCAVNPEILAGSTTNVTLGNALVSMYARCGSMGDA 575

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
              F  + + + V ++S++ GY+ +G    A+ +   M   G+ PD VT++ +L  C+H+
Sbjct: 576 SAAFHHMRARDTVTWSSLVAGYAHHGHAEYAILLYRDMHLEGVQPDSVTYVSILNSCSHA 635

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G++ + +  F SM   + + A   H+ CM+D+LGRAG + +AE++++  P   D + W++
Sbjct: 636 GLLAQARHFFVSMVEDHCLAAWPDHWKCMVDVLGRAGFVGRAEDVVRNMPFQPDVVAWNT 695

Query: 592 LLRSCRVHGNEIIGRRVANILMELEP 617
           LL  C+VHG+   G   A   + + P
Sbjct: 696 LLGCCKVHGDAQRGAVAARNAVGISP 721



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 157/578 (27%), Positives = 290/578 (50%), Gaps = 27/578 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           +++  N  I  + K G  +S   A+ +FD+MP +D+V+++ +I+  G+  H ++A+ L+ 
Sbjct: 33  SVHLGNLLIQMYRKCGGTSSLADARAVFDQMPKKDVVSWSCIIAAYGQAGHCREAINLFQ 92

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M    ++ +     S L+ CS A     G+ IH R+LS     ++++G+ L+++Y + G
Sbjct: 93  RM---DVEPNEMVIVSTLAACSGAKDLALGMAIHARILSPDLRKSVFVGTALLNMYAKCG 149

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
              +A  +FD++P +++ +W  M+ AF ++    + L     M    V+PN ++F   + 
Sbjct: 150 AIEQARAVFDQMPHKDVVSWTAMITAFAQMGDCRQALETLEGMIQARVQPNPVTFVAAIT 209

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS    LD G+++H+ VI LG +  +I + NALV  Y+   S  EA   F  +   + +
Sbjct: 210 ACSSREFLDRGRKIHAAVIDLG-LHGDITIQNALVSMYAKGSSAEEALSVFQRMEDRNRV 268

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNS+++ +A       A+ LF  M L   +P   SF+  L+  S TG +   K+IH  +
Sbjct: 269 SWNSMIAAFAASAQSCSAMGLFHGMNLEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQL 328

Query: 340 TKLGFDHG--SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +L   H    + V+++L   Y KC  +E++  +F+  PG+++    +++T+    GN  
Sbjct: 329 -ELAAVHSPPDLSVENSLVTAYAKCGDLEAAERIFQRIPGKNVVSWTAMLTAYTFHGNGS 387

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A+E++  MV + I  D V L   + A S+    ++G  R LH     S F   I +  +
Sbjct: 388 KALELYDKMVGQSIQPDSVVLLNVIYAGSL--VGDVGLARKLHARVASSSFMLKIQIQNA 445

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM-------I 510
           L++ Y+RCG +E + +VF+ I   N+V + ++M  Y ++G   EA+ +   M       +
Sbjct: 446 LINMYARCGSLEEARRVFDGIERKNLVSWNAMMGSYVQHGYDEEAIALFSEMKTGNSKAM 505

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVK--EGQLVFNSMKSV-----YGIDADRQHYSCMIDM 563
           + GL       + V+  C H+G+ K  EG+ +   + +V      G   +    + ++ M
Sbjct: 506 ESGLRSSPDCIMAVILLCAHAGLGKLAEGRCIHAELCAVNPEILAGSTTNVTLGNALVSM 565

Query: 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
             R G +  A           D + WSSL+     HG+
Sbjct: 566 YARCGSMGDASAAFHHMR-ARDTVTWSSLVAGYAHHGH 602



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 190/392 (48%), Gaps = 11/392 (2%)

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG---SLIEAKKSF 270
           +  ++R C I   L +G+++H H++  G    ++ + N L+  Y  CG   SL +A+  F
Sbjct: 1   YASLLRRCGISRSLADGRRVHDHILATGHFLRSVHLGNLLIQMYRKCGGTSSLADARAVF 60

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  DV+SW+ I++ Y       +A+ LF RM +    P+    V  L   S   ++ 
Sbjct: 61  DQMPKKDVVSWSCIIAAYGQAGHCREAINLFQRMDV---EPNEMVIVSTLAACSGAKDLA 117

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G  IH  +        SV V +AL +MY KC  IE + AVF+  P + +    +++T+ 
Sbjct: 118 LGMAIHARILSPDL-RKSVFVGTALLNMYAKCGAIEQARAVFDQMPHKDVVSWTAMITAF 176

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
              G+ + A+E    M+   +  + VT    + A S     + G  R +H   I  G   
Sbjct: 177 AQMGDCRQALETLEGMIQARVQPNPVTFVAAITACSSREFLDRG--RKIHAAVIDLGLHG 234

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           +I +  +L+  Y++    E +  VF+++   N V + S++  ++ +     A+ +   M 
Sbjct: 235 DITIQNALVSMYAKGSSAEEALSVFQRMEDRNRVSWNSMIAAFAASAQSCSAMGLFHGMN 294

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK-SVYGIDADRQHYSCMIDMLGRAGI 569
             G+ PD V+FL VL+ C+ +G ++  + + + ++ +      D    + ++    + G 
Sbjct: 295 LEGIKPDDVSFLGVLSACSSTGCLRSCKRIHSQLELAAVHSPPDLSVENSLVTAYAKCGD 354

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           L+ AE + Q+ P G + + W+++L +   HGN
Sbjct: 355 LEAAERIFQRIP-GKNVVSWTAMLTAYTFHGN 385


>gi|296088738|emb|CBI38188.3| unnamed protein product [Vitis vinifera]
          Length = 744

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 175/602 (29%), Positives = 310/602 (51%), Gaps = 37/602 (6%)

Query: 93  QALYLYDEMVSH--GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           Q+  L  E V H    + ++  +++ L  C      + G  +HC +L  G  L+L+  + 
Sbjct: 19  QSAKLTQEFVGHVSPSEFNSHAYANALQDCIQKDEPSRGKGLHCEILKRGGCLDLFAWNI 78

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           L+++Y++      A  LFDE+PERN  ++  +++ + E  R  E + ++ ++  EG E N
Sbjct: 79  LLNMYVKSDFLCDASKLFDEMPERNTISFVTLIQGYAESVRFLEAIELFVRLHREGHELN 138

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
              F  +++        + G  +H+ + KLG  + N FV  AL+D YS CG +  A++ F
Sbjct: 139 PFVFTTILKLLVSTDCGELGWGIHACIFKLG-HESNAFVGTALIDAYSVCGRVDVAREVF 197

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D I   D++SW  +V+ +A+ D   +AL+LF +M++   +P+  +F              
Sbjct: 198 DGILYKDMVSWTGMVTCFAENDCFKEALKLFSQMRMVGFKPNNFTFASVFKACLGLEAFD 257

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            GK +HG   K  ++   ++V  AL D+Y K   I+ +   FE  P + +   + ++   
Sbjct: 258 VGKSVHGCALKSRYEL-DLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARY 316

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
             S   K+AVEMF  M    +  ++ T ++ L+A +     NLG+   +HC  IK G  S
Sbjct: 317 AQSDQSKEAVEMFFQMRQALVLPNQFTFASVLQACATMEGLNLGN--QIHCHVIKIGLHS 374

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA----LDML 506
           ++ VS +LMD Y++CG +E S ++F + P  N V + +++ G+ + G G +A    L+ML
Sbjct: 375 DVFVSNALMDVYAKCGRMENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNML 434

Query: 507 EVMIQRGLI---------------------------PDKVTFLCVLAGCNHSGMVKEGQL 539
           E  +Q   +                           PDK+TF+ VL+ C ++G++ +GQ 
Sbjct: 435 EYRVQATEVTYSSALRACASLAALEPGLQIHSLTVKPDKLTFVGVLSACANAGLLDQGQA 494

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F SM   +GI+   +HY+CM+ +LGR G LDKA +L+ + P     M+W +LL +C +H
Sbjct: 495 YFTSMIQDHGIEPCIEHYTCMVWLLGRGGHLDKAVKLIDEIPFQPSVMVWRALLGACVIH 554

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            +  +GR  A  ++E+EP D A +  +SN Y+    ++    +R+    + + ++ G S 
Sbjct: 555 NDIELGRISAQRVLEMEPQDKATHVLLSNMYATAKRWDNVASVRKNMKRKGVKKEPGLSW 614

Query: 660 IE 661
           IE
Sbjct: 615 IE 616



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 54/199 (27%), Positives = 111/199 (55%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L++Y     +D + KSG ++ A++ F+E+P +D++ ++ +I+   +    K+A+ ++ +
Sbjct: 272 ELDLYVGVALLDLYTKSGDIDDARRAFEEIPKKDVIPWSFMIARYAQSDQSKEAVEMFFQ 331

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    +  +  TF+SVL  C+       G QIHC V+ +G   ++++ + L+D+Y + G 
Sbjct: 332 MRQALVLPNQFTFASVLQACATMEGLNLGNQIHCHVIKIGLHSDVFVSNALMDVYAKCGR 391

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              +++LF E P RN  TWN ++    +L   ++ LR++  M    V+   +++   +R 
Sbjct: 392 MENSMELFAESPHRNDVTWNTVIVGHVQLGDGEKALRLFLNMLEYRVQATEVTYSSALRA 451

Query: 221 CSIGMLLDEGKQLHSHVIK 239
           C+    L+ G Q+HS  +K
Sbjct: 452 CASLAALEPGLQIHSLTVK 470


>gi|302812982|ref|XP_002988177.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
 gi|300143909|gb|EFJ10596.1| hypothetical protein SELMODRAFT_127579 [Selaginella moellendorffii]
          Length = 742

 Score =  270 bits (691), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 171/612 (27%), Positives = 315/612 (51%), Gaps = 19/612 (3%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           AK  FD +  R++ ++  L++        K+ L   + M   G++  A TF + L  C +
Sbjct: 11  AKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALGSCGD 70

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE-RNLATWNL 181
                +GI+IH  V+     ++  + + L+++Y + G    A  +F ++   RN+ +W++
Sbjct: 71  PESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLSHAKRVFAKMERTRNVISWSI 130

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M  A        E LR +  M   G++    +   ++  CS   L+ +G+ +HS  I L 
Sbjct: 131 MAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDGRMIHS-CIALS 189

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFI--PVDDVISWNSIVSIYADYDLIFDALE 299
             +  + VANA++  Y  CG++ EA+K FD +   + DV+SWN ++S Y   D   DA++
Sbjct: 190 GFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSTYVHNDRGKDAIQ 249

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+ RMQL   RP   ++V  L+  S   +V  G+ +H  +     +  +V V +AL  MY
Sbjct: 250 LYQRMQL---RPDKVTYVSLLSACSSAEDVGLGRVLHKQIVNDELEK-NVIVGNALVSMY 305

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD-------EGIG 412
            KC     + AVF+    RS+    +++++ +    + +A  +F  M++       + + 
Sbjct: 306 AKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEACHLFQQMLELEKNGSSQRVK 365

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D +   T L A +  ++   G  +++   A   G  S+ AV  ++++ Y +CG IE + 
Sbjct: 366 PDALAFVTILNACADVSALEQG--KMVSEQAASCGLSSDKAVGTAVVNLYGKCGEIEEAR 423

Query: 473 QVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
           ++F+ + S P+V  + +++  Y++ G   EAL +   M   G+ PD  +F+ +L  C+H+
Sbjct: 424 RIFDAVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEMEGVRPDSFSFVSILLACSHT 483

Query: 532 GMVKEGQLVFNSMKSVY-GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           G+  +G+  F SM + Y  +    QH+ C+ D+LGR G L +AEE L++ P   D + W+
Sbjct: 484 GLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRLKEAEEFLEKLPVKPDAVAWT 543

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           SLL +CR H +    + VAN L+ LEP     Y  +SN Y+E+ ++    ++R+    + 
Sbjct: 544 SLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIYAELQKWHAVAKVRKFMAEQG 603

Query: 651 LTRDIGHSLIEV 662
           + ++ G S IE+
Sbjct: 604 VKKERGVSTIEI 615



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/295 (28%), Positives = 145/295 (49%), Gaps = 15/295 (5%)

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            Y+ C S  +AK +FD +   ++ SW  +V+ +A      + L    RM+    RP   +
Sbjct: 1   MYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVT 60

Query: 316 FVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
           F+  L       ++  G +IH  V  ++L  D     V +AL +MY KC  +  +  VF 
Sbjct: 61  FITALGSCGDPESLRDGIRIHQMVVDSRLEID---PKVSNALLNMYKKCGSLSHAKRVFA 117

Query: 374 SAPGRSLECCNSLMTS--LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
                      S+M     LH GN+ +A+  F FM+  GI   +  + T L A S  A  
Sbjct: 118 KMERTRNVISWSIMAGAHALH-GNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALV 176

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP--NVVCFTSI 489
             G  R++H C   SGFES + V+ ++M  Y RCG +E + +VF+ +     +VV +  +
Sbjct: 177 QDG--RMIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIM 234

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           ++ Y  N  G++A+ + + M  R   PDKVT++ +L+ C+ +  V  G+++   +
Sbjct: 235 LSTYVHNDRGKDAIQLYQRMQLR---PDKVTYVSLLSACSSAEDVGLGRVLHKQI 286



 Score = 56.6 bits (135), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/144 (23%), Positives = 69/144 (47%), Gaps = 9/144 (6%)

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y+ C     +   F+ +   N+  +T ++  ++ +G  +E L  LE M Q G+ PD VTF
Sbjct: 2   YAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTF 61

Query: 522 LCVLAGCNHSGMVKEG----QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           +  L  C     +++G    Q+V +S      ++ D +  + +++M  + G L  A+ + 
Sbjct: 62  ITALGSCGDPESLRDGIRIHQMVVDSR-----LEIDPKVSNALLNMYKKCGSLSHAKRVF 116

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGN 601
            +     + + WS +  +  +HGN
Sbjct: 117 AKMERTRNVISWSIMAGAHALHGN 140


>gi|357114780|ref|XP_003559172.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Brachypodium distachyon]
          Length = 846

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 176/656 (26%), Positives = 335/656 (51%), Gaps = 31/656 (4%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           L+ S +L +  +P     ++  N  +  + + G +  A+ LFD MP RD VT+N LI+G 
Sbjct: 73  LTHSHMLRAGYRPG----LFLRNNLLAVYCRCGDMRHARLLFDGMPRRDAVTWNTLIAGY 128

Query: 86  GKFRH----------PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
                           + AL  + +    G+     T+++VL+ C  AG    G   H  
Sbjct: 129 SSSSGGGGSTGGGATTRLALAAFRDARRDGVAVDRFTYAAVLAACGGAGDGRHGRAAHGM 188

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
           V++ G     ++ + ++D+Y + G       +FD   ER+ A+WNL+L A+  +  P+  
Sbjct: 189 VVASGLAETAFLTNSVIDMYAKCGMIDEVRLVFDRAEERDEASWNLLLSAYVRMGWPEVA 248

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
           + +   M   GV+ +  +   +++ CS +    D  + LH  V+K+G +D+++FV +A+V
Sbjct: 249 VHVLVWMHRSGVKLDSFALGGILKACSELEGSEDVRRMLHGCVVKVG-LDLDMFVGSAMV 307

Query: 255 DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY------DLIFDALELFFRMQLCR 308
           D Y+  G L EA K FD IP  +V+ ++++++ +A        ++  +A+ LF  +   R
Sbjct: 308 DMYAKNGGLEEAIKVFDCIPNQNVVVYSAMIAGFARLGNDPCPEIRIEAIRLFSNLLRMR 367

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +PS  +F   L   + T  ++ G+QIH +V   GF      + + L ++Y K   +  S
Sbjct: 368 IKPSRFTFKSVLEVCNLTNALHCGRQIHAHVIFNGFQEDEF-IANVLINLYSKARSVNDS 426

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA---L 425
           +  F   P + +    S++T+   + N + ++++F  +++ G   D+ TLS  + A   L
Sbjct: 427 LRCFHMTPKQDVFTWTSMITAFADNENFEKSLDLFIELLNVGNEPDQFTLSNVMNACAAL 486

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           S+  +     C+ +HC  +KSG +       S +  Y   G ++ S + FE+I   + + 
Sbjct: 487 SIPVT-----CKQIHCYTVKSGLDQFTVCGNSQIAMYRSMGDLKASKKTFEQITCLDTLS 541

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +++++  Y+ +G   EAL +L+ M    +  + + FL VL  C+  G+  EG   ++SMK
Sbjct: 542 WSTMVLSYAVHGHENEALLLLQKMKDCRVGINDIAFLAVLIACSQLGLADEGFRHYDSMK 601

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           S +G   + +H + ++D+L R G + +AE+ + ++    D ++W +LLR+CR+HG++  G
Sbjct: 602 SEHGCAPNSKHKASVVDLLCRVGKIAEAEDFILRSGSENDPILWHALLRACRIHGDKERG 661

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            +    LMELEP     Y  + N Y + G+  ++M+ R     R ++++ G S  E
Sbjct: 662 IKTGEKLMELEPFAARSYVVLYNLYMDAGKISLAMRTRGLMRERGMSKETGISWAE 717



 Score =  126 bits (316), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 116/500 (23%), Positives = 221/500 (44%), Gaps = 41/500 (8%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML----- 183
           G   H  +L  G+   L++ + L+ +Y R G    A  LFD +P R+  TWN ++     
Sbjct: 71  GKLTHSHMLRAGYRPGLFLRNNLLAVYCRCGDMRHARLLFDGMPRRDAVTWNTLIAGYSS 130

Query: 184 -----RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
                 +    +     L  +   + +GV  +  ++  ++  C        G+  H  V+
Sbjct: 131 SSGGGGSTGGGATTRLALAAFRDARRDGVAVDRFTYAAVLAACGGAGDGRHGRAAHGMVV 190

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
             G  +   F+ N+++D Y+ CG + E +  FD     D  SWN ++S Y        A+
Sbjct: 191 ASGLAET-AFLTNSVIDMYAKCGMIDEVRLVFDRAEERDEASWNLLLSAYVRMGWPEVAV 249

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFA---------SRTGNVYFGKQIHGYVTKLGFDHGSV 349
            +   M         RS V+  +FA            G+    + +HG V K+G D   +
Sbjct: 250 HVLVWMH--------RSGVKLDSFALGGILKACSELEGSEDVRRMLHGCVVKVGLDL-DM 300

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK------DAVEMF 403
            V SA+ DMY K   +E ++ VF+  P +++   ++++      GN        +A+ +F
Sbjct: 301 FVGSAMVDMYAKNGGLEEAIKVFDCIPNQNVVVYSAMIAGFARLGNDPCPEIRIEAIRLF 360

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             ++   I     T  + L+  +++ + + G  R +H   I +GF+ +  ++  L++ YS
Sbjct: 361 SNLLRMRIKPSRFTFKSVLEVCNLTNALHCG--RQIHAHVIFNGFQEDEFIANVLINLYS 418

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +   +  S + F   P  +V  +TS++  ++ N    ++LD+   ++  G  PD+ T   
Sbjct: 419 KARSVNDSLRCFHMTPKQDVFTWTSMITAFADNENFEKSLDLFIELLNVGNEPDQFTLSN 478

Query: 524 VLAGCNHSGM-VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
           V+  C    + V   Q+   ++KS  G+D      +  I M    G L  +++  +Q   
Sbjct: 479 VMNACAALSIPVTCKQIHCYTVKS--GLDQFTVCGNSQIAMYRSMGDLKASKKTFEQIT- 535

Query: 583 GGDCMMWSSLLRSCRVHGNE 602
             D + WS+++ S  VHG+E
Sbjct: 536 CLDTLSWSTMVLSYAVHGHE 555


>gi|224058449|ref|XP_002299515.1| predicted protein [Populus trichocarpa]
 gi|222846773|gb|EEE84320.1| predicted protein [Populus trichocarpa]
          Length = 568

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 158/526 (30%), Positives = 279/526 (53%), Gaps = 9/526 (1%)

Query: 139 LGF--GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
           +GF  G +++  + ++ +Y R G  V A+ +FDE+ E ++ +W   +    +     E+ 
Sbjct: 1   MGFLRGSSMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERIGTASDGHEAVELF 60

Query: 197 RMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256
           R+   +  +  E   ++   M+ G      L+ GKQ+ +   K G+  V + V+NALV  
Sbjct: 61  RIVLSLGLDVNEYTLINVLSMIGGVK---FLNAGKQIQALCHKTGYFQV-VSVSNALVSM 116

Query: 257 YSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF 316
           Y  CG + +A + F  + + D +SWNS++S  ++   +  ALE+F++M+    +P+I + 
Sbjct: 117 YGKCGQICDACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTL 176

Query: 317 VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
              L   S + N     QIH  V K GF    V + S L   YG+CN ++ S  VF    
Sbjct: 177 ASILEAVSNSNNTKQVIQIHSLVVKCGFMF-DVSMISCLITAYGRCNSMDESKRVFAEID 235

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
             +L   N+++T+ + +G   DA+ ++  +      +D  T S  LKA S      LG  
Sbjct: 236 KVNLVHLNTMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLG-- 293

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           R +H   +K+GF+ +  V  S++D Y +CG I  + + F      ++  + ++M GY+ +
Sbjct: 294 RAVHSLVLKTGFDQDSFVESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHH 353

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
           G  +E  D+   M Q G+ PD++T+L VL+ C H G+VKE +   +SM  ++GI    +H
Sbjct: 354 GCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELHGIIPHLEH 413

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           Y+CMID+LGR G+L+ A++ +   P   D  +W  LL +C +HG+  +GR  A  L+E+ 
Sbjct: 414 YACMIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEIH 473

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           P + + Y  +SN Y+ +G +    ++R+    + L ++ G S I+V
Sbjct: 474 PENESAYILLSNLYASVGMWNAVGRLRKEMKEKNLRKEPGSSWIQV 519



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 114/476 (23%), Positives = 220/476 (46%), Gaps = 21/476 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ SN  +  + + G    A K+FDE+   D+V++   I   G      +A+ L+  ++
Sbjct: 8   SMHFSNAVMSMYARCGREVDAIKVFDEIAEPDVVSWTERI---GTASDGHEAVELFRIVL 64

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           S G+  +  T  +VLS+     F   G QI       G+   + + + LV +Y + G   
Sbjct: 65  SLGLDVNEYTLINVLSMIGGVKFLNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQIC 124

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  +  R+  +WN ++ A  E    ++ L ++ +M+   ++P   +   ++   S
Sbjct: 125 DACRVFYNMIIRDSVSWNSLISACSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVS 184

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                 +  Q+HS V+K G++  ++ + + L+  Y  C S+ E+K+ F  I   +++  N
Sbjct: 185 NSNNTKQVIQIHSLVVKCGFM-FDVSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLN 243

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ +       DAL L+  +    ++   R+F   L   S   ++  G+ +H  V K 
Sbjct: 244 TMITTFVRAGYYTDALALYQTIWSLHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKT 303

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           GFD  S  V+S++ D+Y KC  I  +   F S+   SL   N++M    H G  ++  ++
Sbjct: 304 GFDQDSF-VESSVIDIYCKCGSIGQAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDL 362

Query: 403 FGFMVDEGIGLDEVTLSTTLKA-----LSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           F  M   GI  DE+T    L +     L   A   L S   LH      G   ++     
Sbjct: 363 FNKMSQFGIEPDEITYLGVLSSCCHGGLVKEARHYLDSMFELH------GIIPHLEHYAC 416

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGR-EALDMLEV 508
           ++D   R G +E + +  + +P  P+V  +  +++  + +G   +GR  A  +LE+
Sbjct: 417 MIDLLGRVGLLEDAKKTIDHMPIQPDVHIWQILLSACNIHGHVELGRVAARKLLEI 472



 Score =  119 bits (298), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/355 (24%), Positives = 173/355 (48%), Gaps = 8/355 (2%)

Query: 26  LSSSLLLDSYCQPNPQLNIYS-SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           L++   + + C       + S SN  +  + K G +  A ++F  M  RD V++N LIS 
Sbjct: 88  LNAGKQIQALCHKTGYFQVVSVSNALVSMYGKCGQICDACRVFYNMIIRDSVSWNSLISA 147

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
           C +     QAL ++ +M    ++ +  T +S+L   SN+    + IQIH  V+  GF  +
Sbjct: 148 CSENGFVNQALEVFYQMRELSLQPTIHTLASILEAVSNSNNTKQVIQIHSLVVKCGFMFD 207

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           + + S L+  Y R      +  +F E+ + NL   N M+  F       + L +Y  + +
Sbjct: 208 VSMISCLITAYGRCNSMDESKRVFAEIDKVNLVHLNTMITTFVRAGYYTDALALYQTIWS 267

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
              + +  +F  +++ CS    +  G+ +HS V+K G+ D + FV ++++D Y  CGS+ 
Sbjct: 268 LHRKVDSRTFSIILKACSAITDMQLGRAVHSLVLKTGF-DQDSFVESSVIDIYCKCGSIG 326

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
           +A+K+F    ++ + +WN+++  YA +    +  +LF +M      P   +++  L+   
Sbjct: 327 QAEKAFRSSSMNSLAAWNAMMMGYAHHGCYQEVFDLFNKMSQFGIEPDEITYLGVLSSCC 386

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSV-HVQ--SALTDMYGKCNVIESSVAVFESAP 376
             G V   K+   Y+  +   HG + H++  + + D+ G+  ++E +    +  P
Sbjct: 387 HGGLV---KEARHYLDSMFELHGIIPHLEHYACMIDLLGRVGLLEDAKKTIDHMP 438


>gi|296082168|emb|CBI21173.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 170/551 (30%), Positives = 286/551 (51%), Gaps = 8/551 (1%)

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           LS  S    Y   +  HC  +  G   ++Y  + ++  Y + G    A  +F E  +R+ 
Sbjct: 7   LSQSSFTALYRASVN-HCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQRDA 65

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +WN M+  F  L   +  L     MK  G   +G SF  +++G +    ++ G+Q+HS 
Sbjct: 66  VSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQVHSM 125

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           ++K+G+ + N+F  +AL+D Y+ C  + +A + F  I + + ++WN+++S YA       
Sbjct: 126 MVKMGY-EGNVFAGSALLDMYAKCERVEDAFEVFKSINIRNSVTWNALISGYAQVGDRGT 184

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           A  L   M+L        +F   L             Q+H  + K G    +  V +A+ 
Sbjct: 185 AFWLLDCMELEGVEIDDGTFAPLLTLLDDPDLHKLTTQVHAKIVKHGLASDTT-VCNAII 243

Query: 357 DMYGKCNVIESSVAVFESA-PGRSLE--CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
             Y +C  IE +  VF+ A   R L+    NS++T    SG  +DA++ F  M  + + +
Sbjct: 244 TAYSECGSIEDAERVFDGAIETRDLDHVSWNSILTGFSQSGLSEDALKFFENMRSQYVVI 303

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D    S  L++ S  A+  LG  + +H   +KSGFE N  V+ SL+  YS+CG IE + +
Sbjct: 304 DHYAFSAVLRSCSDLATLQLG--QQVHVLVLKSGFEPNGFVASSLIFMYSKCGVIEDARK 361

Query: 474 VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
            F+  P  + + + S++ GY+++G G+ ALD+  +M  R +  D +TF+ VL  C+H G+
Sbjct: 362 SFDATPKDSSIAWNSLIFGYAQHGRGKIALDLFFLMKDRRVKLDHITFVAVLTACSHIGL 421

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           V+EG     SM+S YGI    +HY+CMID+LGRAG LD+A+ L++  P   D M+W +LL
Sbjct: 422 VEEGWSFLKSMESDYGIPPRMEHYACMIDLLGRAGRLDEAKALIEAMPFEPDAMVWKTLL 481

Query: 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653
            +CR  G+  +  +VA+ L+ELEP +   Y  +S+ +  +  +     I+     R + +
Sbjct: 482 GACRTCGDIELASQVASHLLELEPEEHCTYVLLSSMFGHLRRWNEKASIKRLMKERGVKK 541

Query: 654 DIGHSLIEVNS 664
             G S IEV +
Sbjct: 542 VPGWSWIEVKN 552



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/454 (27%), Positives = 214/454 (47%), Gaps = 7/454 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +IY++N  I  + K G +  A K+F E   RD V++N +I+G     + + AL     M 
Sbjct: 33  SIYTANNIISGYAKCGEIRIASKMFGETSQRDAVSWNTMIAGFVNLGNFETALEFLKSMK 92

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            +G      +F S+L   +  G+   G Q+H  ++ +G+  N++ GS L+D+Y +     
Sbjct: 93  RYGFAVDGYSFGSILKGVACVGYVEVGQQVHSMMVKMGYEGNVFAGSALLDMYAKCERVE 152

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A ++F  +  RN  TWN ++  + ++        + + M+ EGVE +  +F  ++    
Sbjct: 153 DAFEVFKSINIRNSVTWNALISGYAQVGDRGTAFWLLDCMELEGVEIDDGTFAPLLTLLD 212

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD-FIPVDDV--I 279
              L     Q+H+ ++K G +  +  V NA++  YS CGS+ +A++ FD  I   D+  +
Sbjct: 213 DPDLHKLTTQVHAKIVKHG-LASDTTVCNAIITAYSECGSIEDAERVFDGAIETRDLDHV 271

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNSI++ ++   L  DAL+ F  M+         +F   L   S    +  G+Q+H  V
Sbjct: 272 SWNSILTGFSQSGLSEDALKFFENMRSQYVVIDHYAFSAVLRSCSDLATLQLGQQVHVLV 331

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF+     V S+L  MY KC VIE +   F++ P  S    NSL+      G  K A
Sbjct: 332 LKSGFEPNGF-VASSLIFMYSKCGVIEDARKSFDATPKDSSIAWNSLIFGYAQHGRGKIA 390

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +++F  M D  + LD +T    L A S       G    L       G    +     ++
Sbjct: 391 LDLFFLMKDRRVKLDHITFVAVLTACSHIGLVEEG-WSFLKSMESDYGIPPRMEHYACMI 449

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
           D   R G ++ +  + E +P  P+ + + +++  
Sbjct: 450 DLLGRAGRLDEAKALIEAMPFEPDAMVWKTLLGA 483



 Score = 66.2 bits (160), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 53/202 (26%), Positives = 99/202 (49%), Gaps = 11/202 (5%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L +LS S+   L    + HC AIKSG  ++I  + +++  Y++CG I ++ ++F +    
Sbjct: 4   LHSLSQSSFTALYRASVNHCLAIKSGTTASIYTANNIISGYAKCGEIRIASKMFGETSQR 63

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           + V + +++ G+   G    AL+ L+ M + G   D  +F  +L G    G V+ GQ V 
Sbjct: 64  DAVSWNTMIAGFVNLGNFETALEFLKSMKRYGFAVDGYSFGSILKGVACVGYVEVGQQV- 122

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +SM    G + +    S ++DM  +   ++ A E+  ++    + + W++L     + G 
Sbjct: 123 HSMMVKMGYEGNVFAGSALLDMYAKCERVEDAFEVF-KSINIRNSVTWNAL-----ISGY 176

Query: 602 EIIGRRVANIL----MELEPVD 619
             +G R         MELE V+
Sbjct: 177 AQVGDRGTAFWLLDCMELEGVE 198


>gi|334185017|ref|NP_186807.2| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546765|sp|Q9SS97.2|PP205_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g01580
 gi|332640170|gb|AEE73691.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 660

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 172/603 (28%), Positives = 303/603 (50%), Gaps = 6/603 (0%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A+++F EM  R +  +N L+    + +  ++ LY +  M     K    T    L  C  
Sbjct: 13  ARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGE 72

Query: 123 AGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
                 G  IH  V   +  G +LY+GS L+ +Y++ G  + AL +FDEL + ++ TW+ 
Sbjct: 73  LREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSS 132

Query: 182 MLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
           M+  F +   P + +  + +M  A  V P+ ++   +V  C+       G+ +H  VI+ 
Sbjct: 133 MVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRR 192

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G+ + ++ + N+L++ Y+   +  EA   F  I   DVISW+++++ Y       +AL +
Sbjct: 193 GFSN-DLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLV 251

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F  M      P++ + +  L   +   ++  G++ H    + G +   V V +AL DMY 
Sbjct: 252 FNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLE-TEVKVSTALVDMYM 310

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           KC   E + AVF   P + +    +L++    +G    ++E F  M+ E     +  L  
Sbjct: 311 KCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMV 370

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
            +   S S    L   +  H   IK GF+SN  +  SL++ YSRCG +  + +VF  I  
Sbjct: 371 KVLG-SCSELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIAL 429

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVLAGCNHSGMVKEGQL 539
            + V +TS++ GY  +G G +AL+    M++   + P++VTFL +L+ C+H+G++ EG  
Sbjct: 430 KDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLR 489

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +F  M + Y +  + +HY+ ++D+LGR G LD A E+ ++ P      +  +LL +CR+H
Sbjct: 490 IFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIH 549

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            N  +   VA  L ELE      Y  +SN Y   GE+E   ++R +   R + + +  SL
Sbjct: 550 QNGEMAETVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESL 609

Query: 660 IEV 662
           IE+
Sbjct: 610 IEI 612



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 111/448 (24%), Positives = 234/448 (52%), Gaps = 9/448 (2%)

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           +   SV A  +F E+ +R+L  WN +L++     + +EVL  ++ M  +  +P+  +   
Sbjct: 6   KFSSSVDARQMFGEMTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPV 65

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
            ++ C     ++ G+ +H  V K   +  +++V ++L+  Y  CG +IEA + FD +   
Sbjct: 66  ALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKP 125

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQI 335
           D+++W+S+VS +      + A+E F RM +     P   + +  ++  ++  N   G+ +
Sbjct: 126 DIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCV 185

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG+V + GF +  + + ++L + Y K    + +V +F+    + +   ++++   + +G 
Sbjct: 186 HGFVIRRGFSN-DLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGA 244

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA-NLGSCRLLHCCAIKSGFESNIAV 454
             +A+ +F  M+D+G    E  ++T L  L   A+A +L   R  H  AI+ G E+ + V
Sbjct: 245 AAEALLVFNDMMDDGT---EPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLETEVKV 301

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM-IQRG 513
           S +L+D Y +C   E ++ VF +IP  +VV + ++++G++ NGM   +++   +M ++  
Sbjct: 302 STALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENN 361

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
             PD +  + VL  C+  G +++ +  F+S    YG D++    + ++++  R G L  A
Sbjct: 362 TRPDAILMVKVLGSCSELGFLEQAK-CFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNA 420

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            ++        D ++W+SL+    +HG 
Sbjct: 421 SKVFNGI-ALKDTVVWTSLITGYGIHGK 447



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 133/568 (23%), Positives = 256/568 (45%), Gaps = 30/568 (5%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKK 65
           P   T+      C  +  ++   ++  + + +  L  ++Y  +  I  ++K G +  A +
Sbjct: 58  PDNFTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALR 117

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV-SHGIKESASTFSSVLSVCSNAG 124
           +FDE+   D+VT++ ++SG  K   P QA+  +  MV +  +     T  +++S C+   
Sbjct: 118 MFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLS 177

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G  +H  V+  GF  +L + + L++ Y +      A++LF  + E+++ +W+ ++ 
Sbjct: 178 NSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIA 237

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            + +     E L ++N M  +G EPN  +   +++ C+    L++G++ H   I+ G ++
Sbjct: 238 CYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKG-LE 296

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
             + V+ ALVD Y  C S  EA   F  IP  DV+SW +++S +    +   ++E F  M
Sbjct: 297 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIM 356

Query: 305 QL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
            L    RP     V+ L   S  G +   K  H YV K GFD     + ++L ++Y +C 
Sbjct: 357 LLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPF-IGASLVELYSRCG 415

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTL 422
            + ++  VF     +      SL+T     G    A+E F  MV    +  +EVT  + L
Sbjct: 416 SLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSIL 475

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SP 481
            A S +   + G  R+            N+     L+D   R G ++ + ++ +++P SP
Sbjct: 476 SACSHAGLIHEG-LRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSP 534

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
                 +++ G  R             + Q G + + V         NH+G        +
Sbjct: 535 TPQILGTLL-GACR-------------IHQNGEMAETVAKKLFELESNHAGY-------Y 573

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGI 569
             M +VYG+  + ++   + + + + GI
Sbjct: 574 MLMSNVYGVKGEWENVEKLRNSVKQRGI 601


>gi|147801011|emb|CAN60119.1| hypothetical protein VITISV_016375 [Vitis vinifera]
          Length = 711

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 155/545 (28%), Positives = 295/545 (54%), Gaps = 5/545 (0%)

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           +C +     +G  IH  +++ GFG +L++ + L+  Y+++G  + A ++FD +PER++ +
Sbjct: 160 LCIDKKAKKQGHLIHTHLITNGFGSDLHLNTKLIIFYVKVGDVIAARNVFDGMPERSVVS 219

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  M+  + +  R ++   +++ M+  GV+ N  ++   +R C+    LD G Q+   + 
Sbjct: 220 WTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTYGSALRACTSLRCLDMGIQVQGCIQ 279

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K  +V+ N+FV +ALVDF+S CG + +A   F  +   DV+SWN+++  YA      D+ 
Sbjct: 280 KGRFVE-NLFVKSALVDFHSKCGKMEDASYLFGTMMERDVVSWNAMIGGYAVQGFADDSF 338

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            +F  M      P   +    L  ++  G +    QIHG +T+LG+    + V   L + 
Sbjct: 339 CMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQIHGIITQLGYGSYDI-VTGLLINA 397

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK-DAVEMFGFMVDEGIGLDEVT 417
           Y K   + S+  + +    + L    +L+T   H G    DA+++F  M    IG+D+V 
Sbjct: 398 YAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGIYSVDALDLFKEMNQMNIGMDDVI 457

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
           L + L   +  AS  LG+   +H  A+K     ++A+  +L+D Y++ G IE + + F++
Sbjct: 458 LCSMLNICANLASFALGT--QIHAFALKYQPSYDVAMGNALIDMYAKSGEIEDAKRAFDE 515

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           +   NV+ +TS+++GY+++G G  A+ + + M  +G  P+ VTFL +L  C+H+G+  EG
Sbjct: 516 MEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFKPNDVTFLSLLFACSHTGLTAEG 575

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
              FN+M + Y I    +HYSCM+D+  R G+L++A  LL +     +  +W ++L +  
Sbjct: 576 CECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGASS 635

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           ++G   +G+  A+ L  ++P +   Y  +++ YS  G ++ + +IR+    R   ++ G+
Sbjct: 636 IYGYMSLGKEAASNLFNMQPENSVNYVVLASIYSAAGLWDDAWKIRKLMEERSTKKNAGY 695

Query: 658 SLIEV 662
           S  + 
Sbjct: 696 SFFQA 700



 Score =  132 bits (331), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 117/458 (25%), Positives = 208/458 (45%), Gaps = 8/458 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           +VK G + +A+ +FD MP R +V++  ++SG  +    ++A  L+ +M   G+K +  T+
Sbjct: 196 YVKVGDVIAARNVFDGMPERSVVSWTAMVSGYSQNGRFEKAFVLFSDMRHCGVKANQFTY 255

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            S L  C++      GIQ+   +    F  NL++ S LVD + + G    A  LF  + E
Sbjct: 256 GSALRACTSLRCLDMGIQVQGCIQKGRFVENLFVKSALVDFHSKCGKMEDASYLFGTMME 315

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++ +WN M+  +      D+   M+  M   G+ P+  +   ++R  + G  L    Q+
Sbjct: 316 RDVVSWNAMIGGYAVQGFADDSFCMFRSMLRGGLVPDCYTLGSVLRASAEGGGLIIANQI 375

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  + +LG+   +I V   L++ Y+  GSL  AK     +   D+ S  ++++ YA   +
Sbjct: 376 HGIITQLGYGSYDI-VTGLLINAYAKNGSLRSAKDLRKGMLKKDLFSSTALITGYAHEGI 434

Query: 294 I-FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              DAL+LF  M               LN  +   +   G QIH +  K    +  V + 
Sbjct: 435 YSVDALDLFKEMNQMNIGMDDVILCSMLNICANLASFALGTQIHAFALKYQPSY-DVAMG 493

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL DMY K   IE +   F+    +++    SL++     G    AV ++  M  +G  
Sbjct: 494 NALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLYKKMESKGFK 553

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            ++VT  + L A S +     G C   +    K   +        ++D ++R G +E ++
Sbjct: 554 PNDVTFLSLLFACSHTGLTAEG-CECFNNMVNKYNIKPRAEHYSCMVDLFARQGLLEEAY 612

Query: 473 QVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDML 506
            +  KI    N   + +I+   S  G   +G+EA   L
Sbjct: 613 NLLCKIDIKHNASLWGAILGASSIYGYMSLGKEAASNL 650



 Score = 72.0 bits (175), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 48/155 (30%), Positives = 76/155 (49%), Gaps = 14/155 (9%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
            P  ++   N  ID + KSG +  AK+ FDEM  ++++++  LISG  K  +   A+ LY
Sbjct: 485 QPSYDVAMGNALIDMYAKSGEIEDAKRAFDEMEEKNVISWTSLISGYAKHGYGHMAVSLY 544

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP-------L 151
            +M S G K +  TF S+L  CS+ G   EG +    +      +N Y   P       +
Sbjct: 545 KKMESKGFKPNDVTFLSLLFACSHTGLTAEGCECFNNM------VNKYNIKPRAEHYSCM 598

Query: 152 VDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRA 185
           VDL+ R G    A +L  ++  + N + W  +L A
Sbjct: 599 VDLFARQGLLEEAYNLLCKIDIKHNASLWGAILGA 633


>gi|125578267|gb|EAZ19413.1| hypothetical protein OsJ_34968 [Oryza sativa Japonica Group]
          Length = 786

 Score =  270 bits (690), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 160/616 (25%), Positives = 305/616 (49%), Gaps = 11/616 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G L+SA K+FDEMP R++V++  ++S   +   P      +  M+  G   +  + 
Sbjct: 32  YARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMIRSGFCPNEFSL 91

Query: 114 SSVLSVC-----SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +++L+ C     S +  +  G Q+HC V+      N  + + LVD+Y R      A  +F
Sbjct: 92  ATMLTACHSMACSISAQWGLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVF 151

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
            ++ +++  +WN M   F        V      M   G +PN ++F  ++R         
Sbjct: 152 RKIRQKDTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENAS 211

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G Q+ +   + G+ D N+ VANA+++    CG L  A   F  +   ++++WN I++ Y
Sbjct: 212 LGLQIFALAYRHGYTD-NVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGY 270

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
             +    DA+ LF  +    +RP   ++   L+           +QIH  + K GF    
Sbjct: 271 GLFSHSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQ 330

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG-FMV 407
               S +         ++SS+ + E +    L    +++++ L  G   + + +F  F  
Sbjct: 331 FVSTSLIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRG 390

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
           D     DE  L+T L A   + +A +  CR +H   +K+G  ++  V+ +++DAY++CG 
Sbjct: 391 DSTNKPDEFILATVLNA--CANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGE 448

Query: 468 IELSHQVFEKIPSP--NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           I  +   F  + S   + + + +++  Y+ +G+  EAL++ E M +  L P   TF+ +L
Sbjct: 449 ITSAESAFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAIL 508

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C+H G+V++G+L F++M S YG+   R +Y+C++D+L R G+LD+A+ ++   P    
Sbjct: 509 SACSHLGLVEQGKLAFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPW 568

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             +W SL+  CR+HGN+ +G   A  ++ + P     Y  +SN Y++ GE++ + + R  
Sbjct: 569 PAVWRSLVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLSNVYADDGEWQSAEETRRR 628

Query: 646 ALARKLTRDIGHSLIE 661
            +   L +  G+  +E
Sbjct: 629 MVQNNLQKVHGYVALE 644



 Score =  105 bits (262), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 98/451 (21%), Positives = 195/451 (43%), Gaps = 10/451 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +D + ++    +A  +F ++  +D V++N + SG       K       +M   G K
Sbjct: 132 NSLVDMYFRARQKETAASVFRKIRQKDTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFK 191

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  TFS +L +       + G+QI       G+  N+ + + ++++  R G   RA   
Sbjct: 192 PNEVTFSVLLRLSGAKENASLGLQIFALAYRHGYTDNVLVANAVINMLFRCGLLDRAYGF 251

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F  L  RN+ TWN ++  +   S  ++ +R++  +   G  P+  ++  ++         
Sbjct: 252 FCSLTFRNIVTWNEIIAGYGLFSHSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGA 311

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC-GSLIEAKKSFDFIPVDDVISWNSIVS 286
            + +Q+H+ ++K G+     FV+ +L+   +A  GS+  + K  +     +++SW +I+S
Sbjct: 312 RDHEQIHAIILKQGFASCQ-FVSTSLIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIIS 370

Query: 287 IYADYDLIFDALELF--FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
            +  + L  + + LF  FR     K P        LN  +    +   + IH  V K G 
Sbjct: 371 AFLKHGLNDEVIFLFNLFRGDSTNK-PDEFILATVLNACANAALIRHCRCIHSLVLKTGH 429

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC--NSLMTSLLHSGNIKDAVEM 402
            +    V SA+ D Y KC  I S+ + F +    + +    N+++T+  + G I +A+ +
Sbjct: 430 SNHFC-VASAVVDAYAKCGEITSAESAFTAVSSATNDAIMYNTMLTAYANHGLIHEALNL 488

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           +  M    +     T    L A S       G        +      +    +C L+D  
Sbjct: 489 YEEMTKAKLNPTPATFVAILSACSHLGLVEQGKLAFSTMLSAYGMHPARANYAC-LVDLL 547

Query: 463 SRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
           +R G ++ +  V + +P  P    + S++NG
Sbjct: 548 ARKGLLDEAKGVIDAMPFQPWPAVWRSLVNG 578


>gi|347954534|gb|AEP33767.1| organelle transcript processing 82, partial [Matthiola incana]
          Length = 694

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 157/538 (29%), Positives = 290/538 (53%), Gaps = 41/538 (7%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A+ +FD + E NL  WN M R     S P   L++Y  M + G+ P+  +F ++++ C+ 
Sbjct: 42  AISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAK 101

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF----------- 272
             +  EG+Q+H HV+KLG+ D++I+V  +L+  Y+  G L +A+K FD            
Sbjct: 102 SKIRKEGQQIHGHVLKLGF-DLDIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTA 160

Query: 273 --------------------IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RP 311
                               IP  DV+SWN+++S Y +     +ALELF  M +    RP
Sbjct: 161 LIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRP 220

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
              + V  ++  +++ ++  G+ +H ++   GF   ++ + +AL D+Y K   +E++  +
Sbjct: 221 DESTMVTVVSACAQSDSIELGRHVHSWINDHGFA-SNLKIVNALIDLYSKFGEVETACEL 279

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F+    + +   N+L+    H    K+A+ +F  M+  G   ++VT+ + L A +   + 
Sbjct: 280 FDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAI 339

Query: 432 NLGSCRLLHCCAIKS--GFESNIA-VSCSLMDAYSRCGHIELSHQVFEK-IPSPNVVCFT 487
           ++G  R +H    K   G  +N++ +  SL+D Y++CG I+ + QVF+  + + ++  + 
Sbjct: 340 DIG--RWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWN 397

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           ++++G++ +G    A D+   M   G+ PD +TF+ +L+ C+HSGM+  G+ +F SM   
Sbjct: 398 AMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGRNIFRSMTRG 457

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           Y I    +HY CMID+LG +G+  +AEE++   P   D ++W SLL++C++HGN  +G  
Sbjct: 458 YEITPKLEHYGCMIDLLGHSGLFKEAEEMINTMPMEPDGVIWCSLLKACKIHGNLELGES 517

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI-GHSLIEVNS 664
            A  L+++EP +   Y  +SN Y+  G +    +IR     + + + + G S IE++S
Sbjct: 518 FAKKLIKIEPGNSGSYVLLSNIYAAAGRWNEVAKIRALLNDKGMKKKVPGCSSIEIDS 575



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 121/428 (28%), Positives = 203/428 (47%), Gaps = 39/428 (9%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ ++  V S H +    A  +FD +   +++ +N +  G      P  AL LY  M
Sbjct: 21  YALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRGHALSSDPVSALKLYLVM 80

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-- 159
           +S G+   + TF  +L  C+ +    EG QIH  VL LGF L++Y+ + L+ +Y + G  
Sbjct: 81  ISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDLDIYVHTSLISMYAQNGRL 140

Query: 160 ---------PSVR--------------------ALDLFDELPERNLATWNLMLRAFCELS 190
                     S R                    A  LFDE+P +++ +WN M+  + E  
Sbjct: 141 EDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETG 200

Query: 191 RPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              E L ++ + M    V P+  +   +V  C+    ++ G+ +HS +   G+   N+ +
Sbjct: 201 NYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFAS-NLKI 259

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            NAL+D YS  G +  A + FD +   DVISWN+++  Y   +L  +AL LF  M    +
Sbjct: 260 VNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGE 319

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIES 367
            P+  + +  L   +  G +  G+ IH Y+ K   G       +Q++L DMY KC  I++
Sbjct: 320 TPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDA 379

Query: 368 SVAVFESA-PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           +  VF+S+   RSL   N++++     G    A ++F  M   GI  D++T    L A S
Sbjct: 380 AQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACS 439

Query: 427 VSASANLG 434
            S   +LG
Sbjct: 440 HSGMLDLG 447



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 113/430 (26%), Positives = 202/430 (46%), Gaps = 38/430 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +V  G++ SA+KLFDE+P +D+V++N +ISG  +  + K+AL L+ EM+
Sbjct: 154 DVVSYTALIAGYVSRGYIESAQKLFDEIPGKDVVSWNAMISGYVETGNYKEALELFKEMM 213

Query: 103 S-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               ++   ST  +V+S C+ +     G  +H  +   GF  NL I + L+DLY + G  
Sbjct: 214 MMTNVRPDESTMVTVVSACAQSDSIELGRHVHSWINDHGFASNLKIVNALIDLYSKFGEV 273

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A +LFD L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C
Sbjct: 274 ETACELFDGLWNKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGETPNDVTMLSILPAC 333

Query: 222 SIGMLLDEGKQLHSHV-IKLGWVDVNI-FVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           +    +D G+ +H ++  KL  V  N+  +  +L+D Y+ CG +  A++ FD    +  +
Sbjct: 334 AHLGAIDIGRWIHVYINKKLKGVVTNVSSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSL 393

Query: 280 S-WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           S WN+++S +A +     A ++F RM++    P   +FV  L+  S +G +  G+     
Sbjct: 394 STWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITFVGLLSACSHSGMLDLGR----- 448

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
                                   N+  S    +E  P   LE    ++  L HSG  K+
Sbjct: 449 ------------------------NIFRSMTRGYEITP--KLEHYGCMIDLLGHSGLFKE 482

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A EM   M  E    D V   + LKA  +  +  LG         I+ G   +  +  ++
Sbjct: 483 AEEMINTMPMEP---DGVIWCSLLKACKIHGNLELGESFAKKLIKIEPGNSGSYVLLSNI 539

Query: 459 MDAYSRCGHI 468
             A  R   +
Sbjct: 540 YAAAGRWNEV 549



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 100/407 (24%), Positives = 195/407 (47%), Gaps = 41/407 (10%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSAC---GSLIEAKKSFDFIPVDDVISWNSIVSI 287
           + +H+ +IK G  + N +  + L++F            A   FD I   +++ WN++   
Sbjct: 5   RXIHAQMIKTGLHNTN-YALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFRG 63

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +A       AL+L+  M      P   +F   L   +++     G+QIHG+V KLGFD  
Sbjct: 64  HALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKLGFDL- 122

Query: 348 SVHVQSALTDMYGKC-------------------------------NVIESSVAVFESAP 376
            ++V ++L  MY +                                  IES+  +F+  P
Sbjct: 123 DIYVHTSLISMYAQNGRLEDARKVFDISSHRDVVSYTALIAGYVSRGYIESAQKLFDEIP 182

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFG-FMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           G+ +   N++++  + +GN K+A+E+F   M+   +  DE T+ T + A + S S  LG 
Sbjct: 183 GKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSACAQSDSIELG- 241

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            R +H      GF SN+ +  +L+D YS+ G +E + ++F+ + + +V+ + +++ GY+ 
Sbjct: 242 -RHVHSWINDHGFASNLKIVNALIDLYSKFGEVETACELFDGLWNKDVISWNTLIGGYTH 300

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADR 554
             + +EAL + + M++ G  P+ VT L +L  C H G +  G+ +   + K + G+  + 
Sbjct: 301 MNLYKEALLLFQEMLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYINKKLKGVVTNV 360

Query: 555 QH-YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
               + +IDM  + G +D A+++   +        W++++    +HG
Sbjct: 361 SSLQTSLIDMYAKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHG 407



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 66/275 (24%), Positives = 116/275 (42%), Gaps = 44/275 (16%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRT------IDDF 54
           ML +   P   T+ ++ P C  +  +     +  Y   N +L    +N +      ID +
Sbjct: 314 MLRSGETPNDVTMLSILPACAHLGAIDIGRWIHVYI--NKKLKGVVTNVSSLQTSLIDMY 371

Query: 55  VKSGHLNSAKKLFDE-MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
            K G +++A+++FD  M  R + T+N +ISG         A  ++  M  +GI+    TF
Sbjct: 372 AKCGDIDAAQQVFDSSMSNRSLSTWNAMISGFAMHGRANAAFDIFSRMRMNGIEPDDITF 431

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             +LS CS++G    G  I  R ++ G+ +     +P ++ Y  M   +    LF E  E
Sbjct: 432 VGLLSACSHSGMLDLGRNIF-RSMTRGYEI-----TPKLEHYGCMIDLLGHSGLFKEAEE 485

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
                                   M N M    +EP+G+ +C +++ C I   L+ G+  
Sbjct: 486 ------------------------MINTMP---MEPDGVIWCSLLKACKIHGNLELGESF 518

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
              +IK+   +   +V   L + Y+A G   E  K
Sbjct: 519 AKKLIKIEPGNSGSYV--LLSNIYAAAGRWNEVAK 551



 Score = 59.3 bits (142), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 52/235 (22%), Positives = 108/235 (45%), Gaps = 9/235 (3%)

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE---LSHQVFEKIPSPNVVCFTSIMN 491
           S R +H   IK+G  +       L++      H +    +  VF+ I  PN++ + ++  
Sbjct: 3   SVRXIHAQMIKTGLHNTNYALSKLLEFCVVSPHFDGFPYAISVFDTIQEPNLLIWNTMFR 62

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G++ +     AL +  VMI  GL+PD  TF  +L  C  S + KEGQ +   +  + G D
Sbjct: 63  GHALSSDPVSALKLYLVMISLGLLPDSYTFPFLLKSCAKSKIRKEGQQIHGHVLKL-GFD 121

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611
            D   ++ +I M  + G L+ A ++        D + +++L+      G     +++ + 
Sbjct: 122 LDIYVHTSLISMYAQNGRLEDARKVF-DISSHRDVVSYTALIAGYVSRGYIESAQKLFD- 179

Query: 612 LMELEPVDFAVYSQVSNFYSEIGEFEVSMQI-RETALARKLTRDIGHSLIEVNSC 665
             E+   D   ++ + + Y E G ++ ++++ +E  +   +  D    +  V++C
Sbjct: 180 --EIPGKDVVSWNAMISGYVETGNYKEALELFKEMMMMTNVRPDESTMVTVVSAC 232


>gi|297830768|ref|XP_002883266.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329106|gb|EFH59525.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 564

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 165/537 (30%), Positives = 281/537 (52%), Gaps = 10/537 (1%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +   L +CS      + + IH   ++ GFG NL +   L+DLY++ G    A  LFD +P
Sbjct: 15  YLKALKLCSYQNVKKQLLLIHGNSVTNGFGSNLQLNDMLIDLYLKQGDVKHARKLFDRIP 74

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           +R++ +W  M+  F       + L ++ +M  + V  N  ++  +++ C     L EG Q
Sbjct: 75  KRDVVSWTAMISRFSRCGYHRDALLLFKQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQ 134

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +   + K G    N+ V +AL+  Y+ CG + +A+  FD +   D++SWNS++  Y    
Sbjct: 135 IQGCLEK-GKCAGNLIVRSALLSLYARCGKMEDARLQFDSMKERDLVSWNSMIDGYTTNA 193

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            +  +  LF  M    K+P   +F   L  +     +    Q+HG   KLGF   S  ++
Sbjct: 194 CVDTSFSLFQLMFAEGKKPDCFTFGSLLRASIVVKCLEPVGQLHGLAIKLGFGRSSALIR 253

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI--KDAVEMFGFMVDEG 410
           S L D Y KC  I ++  + E    R L  C +L+T      NI   DA ++F  M+   
Sbjct: 254 S-LVDAYVKCGSIANAWKLHEDTTKRDLISCTALITGFAQQ-NICTSDAFDIFNEMILMK 311

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIE 469
             +DEV +S+ LK  +  AS  +G  R +H  A+KS     +IA+  SL+D Y++ G IE
Sbjct: 312 TKMDEVVVSSMLKICTTIASVTVG--RQIHGFALKSSQIRFDIALGNSLIDMYAKSGDIE 369

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +   FE++   +V  +TS++ GY R+G   +A+D+   M   G+ P+ VTFL +L+ C+
Sbjct: 370 DAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHEGIKPNDVTFLSLLSACS 429

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG--GGDCM 587
           H+G  + G  +FN M + +GI A  +H+SC+IDML R+G L++A EL++   G       
Sbjct: 430 HTGQTELGWKIFNKMINKHGIKAREEHFSCIIDMLARSGYLEEAYELIRSKDGIISLSSS 489

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
            W + L +CR HGN  + +  A+ L+ +EP     Y  +++ ++  G ++ +++ R+
Sbjct: 490 TWGAFLDACRRHGNVQLSKVAASQLLSVEPKKPVNYINLASVHAANGAWDSALKTRQ 546



 Score =  182 bits (462), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 124/439 (28%), Positives = 216/439 (49%), Gaps = 7/439 (1%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N QLN    +  ID ++K G +  A+KLFD +P RD+V++  +IS   +  + + AL L+
Sbjct: 46  NLQLN----DMLIDLYLKQGDVKHARKLFDRIPKRDVVSWTAMISRFSRCGYHRDALLLF 101

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            +M    ++ +  T+ SVL  C + G   EG+QI   +       NL + S L+ LY R 
Sbjct: 102 KQMHRQDVRANQFTYGSVLKSCKDLGCLKEGMQIQGCLEKGKCAGNLIVRSALLSLYARC 161

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A   FD + ER+L +WN M+  +   +  D    ++  M AEG +P+  +F  ++
Sbjct: 162 GKMEDARLQFDSMKERDLVSWNSMIDGYTTNACVDTSFSLFQLMFAEGKKPDCFTFGSLL 221

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           R   +   L+   QLH   IKLG+   +  +  +LVD Y  CGS+  A K  +     D+
Sbjct: 222 RASIVVKCLEPVGQLHGLAIKLGFGRSSALI-RSLVDAYVKCGSIANAWKLHEDTTKRDL 280

Query: 279 ISWNSIVSIYADYDL-IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           IS  ++++ +A  ++   DA ++F  M L + +         L   +   +V  G+QIHG
Sbjct: 281 ISCTALITGFAQQNICTSDAFDIFNEMILMKTKMDEVVVSSMLKICTTIASVTVGRQIHG 340

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           +  K       + + ++L DMY K   IE +V  FE    + +    SL+      GN +
Sbjct: 341 FALKSSQIRFDIALGNSLIDMYAKSGDIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFE 400

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A++++  M  EGI  ++VT  + L A S +    LG  ++ +    K G ++       
Sbjct: 401 KAIDLYNRMEHEGIKPNDVTFLSLLSACSHTGQTELG-WKIFNKMINKHGIKAREEHFSC 459

Query: 458 LMDAYSRCGHIELSHQVFE 476
           ++D  +R G++E ++++  
Sbjct: 460 IIDMLARSGYLEEAYELIR 478



 Score = 66.6 bits (161), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 90/179 (50%), Gaps = 6/179 (3%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           ++++   CT+I  ++    +  +   + Q+  +I   N  ID + KSG +  A   F+EM
Sbjct: 319 VSSMLKICTTIASVTVGRQIHGFALKSSQIRFDIALGNSLIDMYAKSGDIEDAVLAFEEM 378

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +D+ ++  LI+G G+  + ++A+ LY+ M   GIK +  TF S+LS CS+ G    G 
Sbjct: 379 KEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHEGIKPNDVTFLSLLSACSHTGQTELGW 438

Query: 131 QIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALDLF---DELPERNLATWNLMLRA 185
           +I  ++++  G        S ++D+  R G    A +L    D +   + +TW   L A
Sbjct: 439 KIFNKMINKHGIKAREEHFSCIIDMLARSGYLEEAYELIRSKDGIISLSSSTWGAFLDA 497


>gi|242074230|ref|XP_002447051.1| hypothetical protein SORBIDRAFT_06g027570 [Sorghum bicolor]
 gi|241938234|gb|EES11379.1| hypothetical protein SORBIDRAFT_06g027570 [Sorghum bicolor]
          Length = 818

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 185/646 (28%), Positives = 330/646 (51%), Gaps = 26/646 (4%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L D+    N  LN+Y+S      +   G ++  ++LFD MP R+ V++N L     K   
Sbjct: 166 LPDTAVLRNSLLNLYAS---CMRYRGDGGVDVVRRLFDVMPKRNAVSWNTLFGWYVKTGR 222

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNA----GFYTEGIQI-HCRVLSLGFGLNL 145
           P++AL L+  M+  GIK +  +F +V    +       F   G+ + H R     +  +L
Sbjct: 223 PQEALELFARMLEDGIKPTPVSFVNVFPAVAKEDPSWSFVLYGLLVKHGR----EYVNDL 278

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKA 204
           ++ S  + ++  +G    A  +F+   ++N   WN M+  + +  +  E + +  + M +
Sbjct: 279 FVVSSAIAMFSELGDLQSAWRVFEYTAKKNTEVWNTMITGYVQNGKFAEAMDLVIRLMGS 338

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
           + V  + ++F   +   S       G+QLH ++IK     + + + NALV  YS CG++ 
Sbjct: 339 KEVPLDVVTFLSALTAASQSQDGRLGQQLHGYLIKGTHATLPVILGNALVVMYSRCGNVQ 398

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFA 323
            A K FD +P  D++SWN++V+ +   D   + L L ++MQ  C    S+ +    L+ A
Sbjct: 399 TAFKLFDRLPEKDIVSWNTMVTAFVQNDFDLEGLLLVYQMQKSCFAADSV-TLTAVLSAA 457

Query: 324 SRTGNVYFGKQIHGYVTKLGF-DHGSVHVQSALTDMYGKCNVIESSVAVFESAPG--RSL 380
           S TG++  GKQ HGY+ + G  D G   ++S L DMY K   IE +  VF+      R  
Sbjct: 458 SNTGDLQIGKQAHGYLVRRGIEDEG---LESYLIDMYAKSGRIEIAQRVFDDYGNVKRDE 514

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
              N+++     SG  + A+  F  M+   +    VTL++ L A        L + + +H
Sbjct: 515 VTWNAMIAGYTQSGQPEQAILTFRAMLQASLEPTSVTLASVLPACD-PLGGGLCAGKQIH 573

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
           C A++   ++N+ V  +L+D YS+CG I  +  VF  +   + V +T++++G  ++G G 
Sbjct: 574 CFALRRCLDTNVFVGTALVDMYSKCGEISTAEHVFAVMIEKSTVSYTTMISGLGQHGFGE 633

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
            AL +   M ++GL PD VTFL  ++ CN+SG+V EG  ++ SM++ +G+    QH  C+
Sbjct: 634 RALSLFYYMQEKGLKPDGVTFLAAISACNYSGLVDEGLALYRSMET-FGVAVTPQHRCCI 692

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVH-GNEIIGRRVANILMELEPV 618
           +DML +AG +++A E +Q+    G+ + +W SLL SC+     E++      +L   +  
Sbjct: 693 VDMLAKAGRVEEAYEFVQELGEEGNFISIWGSLLVSCKAQDKQELVNLATERLLCIEKKY 752

Query: 619 DFAVYSQ-VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             A Y+  +S+ ++  G +  +  +R+    R L +  G S I+V 
Sbjct: 753 GHAGYNVLLSHIFAAEGNWSSADSLRKEMRLRGLRKMAGSSWIKVQ 798


>gi|359491917|ref|XP_003634341.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Vitis vinifera]
          Length = 767

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 178/685 (25%), Positives = 323/685 (47%), Gaps = 102/685 (14%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+YS N  I  F  SG +  A+KLF++MP RD V++N ++SG       +  + ++  MV
Sbjct: 59  NVYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMV 118

Query: 103 SHGI-KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-- 159
                     +FS V+    + G+    +Q+H       FG++  + + ++D+Y++ G  
Sbjct: 119 RDCCCVPDPFSFSCVMKASGSLGYLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAM 178

Query: 160 ------------PSV-----------------RALDLFDELPERNLATWNLMLRAFCELS 190
                       PS+                 +AL+LF ++PER+  +WN M+    +  
Sbjct: 179 DFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHG 238

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E L  + +M  +G  PN +++  ++  C+    L+ G  LH+ ++++    ++++  
Sbjct: 239 FGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRME-PCLDVYAG 297

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
             L+D Y+ CG L  A++ FD +   + +SW S++   A      +AL LF +M+     
Sbjct: 298 CGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVA 357

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
               +    L       ++  G+Q+H +    G D  SV V +AL  MY KC  +  +  
Sbjct: 358 SDQFTLATVLGVCLSQKDISIGEQLHAHTITRGLD-SSVPVANALVTMYAKCGDVWKANH 416

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF---------------------GF---- 405
            FE  P R +    +++T+   +G+++ A E F                     G+    
Sbjct: 417 AFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEG 476

Query: 406 ------MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
                 M+ EG+  D +T ST++ A +  A   LG+  L    A K GF SN++V+ S++
Sbjct: 477 LKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQ--AEKLGFSSNVSVANSVV 534

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             YSRCG IE + ++F  I   N+V + ++M GY++NG GR+ +++ E M+  G +PD++
Sbjct: 535 TMYSRCGQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQI 594

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +++ VL+                                   D+LGRAG L++A+ L+ Q
Sbjct: 595 SYVSVLS-----------------------------------DLLGRAGQLEQAKNLINQ 619

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   +  +W +LL +CR+HGN  +       L+EL+      Y  ++N YSE G+ +  
Sbjct: 620 MPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELDAEGPGSYCLLANIYSESGKIQGV 679

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
             +R+    + + ++ G S IEV++
Sbjct: 680 TNVRKLMRDKGVRKNPGCSWIEVDN 704



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 129/517 (24%), Positives = 245/517 (47%), Gaps = 47/517 (9%)

Query: 35  YCQ-PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           +C+ PNP L  +  N  I  + K G +  A +LF +MP RD V++N +IS   +     +
Sbjct: 185 FCRTPNPSL--FCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHGFGAE 242

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
            L  + EM + G + ++ T++SVLS C++      G  +H R++ +   L++Y G  L+D
Sbjct: 243 TLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLID 302

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A  +FD L E N  +W  ++    +    +E L ++N+M+   V  +  +
Sbjct: 303 MYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFT 362

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++  C     +  G+QLH+H I  G +D ++ VANALV  Y+ CG + +A  +F+ +
Sbjct: 363 LATVLGVCLSQKDISIGEQLHAHTITRG-LDSSVPVANALVTMYAKCGDVWKANHAFELM 421

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFR----------------MQLCRKRPSIRSFV 317
           P+ D+ISW ++++ ++    +  A E F +                MQ       ++ ++
Sbjct: 422 PIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYI 481

Query: 318 EFLNFASRTGNVYF---------------GKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           + L    +T  + F               G QI     KLGF   +V V +++  MY +C
Sbjct: 482 QMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKLGFS-SNVSVANSVVTMYSRC 540

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             IE +  +F S   ++L   N++M     +G  +  +E+F  M++ G   D+++  + L
Sbjct: 541 GQIEEAQKMFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVL 600

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI---- 478
             L   A     +  L++    +  F+ N A+  +L+ A    G+ +L+    + +    
Sbjct: 601 SDLLGRAGQLEQAKNLIN----QMPFKPNAAIWGALLAACRIHGNTKLAELAVKNLLELD 656

Query: 479 -PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
              P   C   + N YS +G  +   ++ ++M  +G+
Sbjct: 657 AEGPGSYCL--LANIYSESGKIQGVTNVRKLMRDKGV 691



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 175/368 (47%), Gaps = 34/368 (9%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDS-YCQPNPQLNIYSSNRTIDDFVKSGH 59
           M +    P   T  ++   CTSI  L     L +   +  P L++Y+    ID + K G 
Sbjct: 250 MWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLDVYAGCGLIDMYAKCGR 309

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L SA+++FD +   + V++  LI G  +    ++AL L+++M    +     T ++VL V
Sbjct: 310 LESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVPVASDQFTLATVLGV 369

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR---------------------- 157
           C +    + G Q+H   ++ G   ++ + + LV +Y +                      
Sbjct: 370 CLSQKDISIGEQLHAHTITRGLDSSVPVANALVTMYAKCGDVWKANHAFELMPIRDIISW 429

Query: 158 ---------MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
                     G   +A + FD++PERN+ +WN ML  + +    +E L++Y +M  EGV+
Sbjct: 430 TAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYWEEGLKVYIQMLREGVK 489

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
            + ++F   +  C+   +L  G Q+ +   KLG+   N+ VAN++V  YS CG + EA+K
Sbjct: 490 TDWITFSTSISACADLAVLILGNQILAQAEKLGF-SSNVSVANSVVTMYSRCGQIEEAQK 548

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL-NFASRTG 327
            F  I + +++SWN++++ YA        +E+F +M      P   S+V  L +   R G
Sbjct: 549 MFSSIVMKNLVSWNAMMAGYAQNGQGRKVIEIFEKMLNIGNVPDQISYVSVLSDLLGRAG 608

Query: 328 NVYFGKQI 335
            +   K +
Sbjct: 609 QLEQAKNL 616



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 130/623 (20%), Positives = 267/623 (42%), Gaps = 85/623 (13%)

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
           C   R    A  L+ +++  G+K S    + +L++ SN G  ++  ++   ++      N
Sbjct: 4   CASLRSIPIARKLHAQLIFMGLKSSIFLQNHLLNMYSNCGLISDAYRVFGGIMF----PN 59

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           +Y  + ++  +   G    A  LF+++PER+  +WN M+  +      +  ++++  M  
Sbjct: 60  VYSWNTMISGFADSGQMREAEKLFEKMPERDSVSWNSMMSGYFHNGELEATIKVFVSMVR 119

Query: 205 E-GVEPNGLSF-CYMVRGCSIGMLLDEGKQLHSHV-------------------IKLGWV 243
           +    P+  SF C M    S+G  L    QLH                      IK G +
Sbjct: 120 DCCCVPDPFSFSCVMKASGSLG-YLKLALQLHGFAEKFDFGIDTCVETSVLDMYIKCGAM 178

Query: 244 DV-----------NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           D            ++F  N+++  YS  GS+ +A + F  +P  D +SWN+++SI + + 
Sbjct: 179 DFAQKVFCRTPNPSLFCWNSMIYGYSKYGSVKKALELFAKMPERDTVSWNTMISILSQHG 238

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG--FDHGSVH 350
              + L  F  M     RP+  ++   L+  +   ++ +G  +H  + ++    D   V+
Sbjct: 239 FGAETLNTFLEMWNQGFRPNSMTYASVLSACTSIYDLEWGAHLHARIVRMEPCLD---VY 295

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
               L DMY KC  +ES+  VF+     +     SL+  +  +G  ++A+ +F  M +  
Sbjct: 296 AGCGLIDMYAKCGRLESARQVFDGLTEHNAVSWTSLIGGVAQAGFQEEALVLFNQMREVP 355

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC----- 465
           +  D+ TL+T L         ++G    LH   I  G +S++ V+ +L+  Y++C     
Sbjct: 356 VASDQFTLATVLGVCLSQKDISIG--EQLHAHTITRGLDSSVPVANALVTMYAKCGDVWK 413

Query: 466 --------------------------GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
                                     G +E + + F+K+P  NV+ + S++  Y + G  
Sbjct: 414 ANHAFELMPIRDIISWTAMITAFSQAGDVEKAREYFDKMPERNVISWNSMLATYMQRGYW 473

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            E L +   M++ G+  D +TF   ++ C    ++  G  +    + + G  ++    + 
Sbjct: 474 EEGLKVYIQMLREGVKTDWITFSTSISACADLAVLILGNQILAQAEKL-GFSSNVSVANS 532

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL---- 615
           ++ M  R G +++A+++        + + W++++     +G    GR+V  I  ++    
Sbjct: 533 VVTMYSRCGQIEEAQKMFSSIV-MKNLVSWNAMMAGYAQNGQ---GRKVIEIFEKMLNIG 588

Query: 616 -EPVDFAVYSQVSNFYSEIGEFE 637
             P   +  S +S+     G+ E
Sbjct: 589 NVPDQISYVSVLSDLLGRAGQLE 611


>gi|125551253|gb|EAY96962.1| hypothetical protein OsI_18881 [Oryza sativa Indica Group]
          Length = 822

 Score =  270 bits (689), Expect = 2e-69,   Method: Compositional matrix adjust.
 Identities = 184/632 (29%), Positives = 328/632 (51%), Gaps = 30/632 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           +N  +  + + G + SA+ +FD M   RD+V++  + S   +    + +L L  EM+  G
Sbjct: 87  ANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERGSLLLIGEMLESG 146

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLG-FGLNLYIGSPLVDLYMRMGPSVR 163
           +  +A T  +    C     Y     +   ++  +G +G ++ +GS L+D+  R G    
Sbjct: 147 LLPNAYTLCAAAHACFPHELYCLVGGVVLGLVHKMGLWGTDVAVGSALIDMLARNGDLAS 206

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD L E+ +  W L++  + +    +E + ++     +G EP+  +   M+  C+ 
Sbjct: 207 ARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVELFLDFLEDGFEPDRYTMSSMISACTE 266

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY--SACGSLIE-AKKSFDFIPVDDVIS 280
              +  G QLHS  +++G    +  V+  LVD Y  S  G  ++ A K F+ +P +DVIS
Sbjct: 267 LGSVRLGLQLHSLALRMGLAS-DACVSCGLVDMYAKSNIGQAMDYANKVFERMPKNDVIS 325

Query: 281 WNSIVSIYADYDLIFD-ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           W +++S Y    +  +  + LF  M     +P+  ++   L   +   +   G+Q+H +V
Sbjct: 326 WTALISGYVQSGVQENKVMALFGEMLNESIKPNHITYSSILKSCASISDHDSGRQVHAHV 385

Query: 340 TKLGFDHGSVH-VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            K   +  S H V +AL  MY +   +E +  VF     RS+  C               
Sbjct: 386 IK--SNQASAHTVGNALVSMYAESGCMEEARRVFNQLYERSMIPC--------------- 428

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVS 455
             E   F +D  I   +V +S++  A  +SA+A++G     + LH  ++K+GF S+  VS
Sbjct: 429 ITEGRDFPLDHRIVRMDVGISSSTFASLISAAASVGMLTKGQQLHAMSLKAGFGSDRFVS 488

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            SL+  YSRCG++E + + F ++   NV+ +TS+++G +++G    AL +   MI  G+ 
Sbjct: 489 NSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVK 548

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P+ VT++ VL+ C+H G+V+EG+  F SM+  +G+    +HY+CM+D+L R+GI+ +A E
Sbjct: 549 PNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGIVKEALE 608

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            + + P   D ++W +LL +CR H N  +G   A  ++ELEP D A Y  +SN Y++ G 
Sbjct: 609 FINEMPLKADALVWKTLLGACRSHDNIEVGEITAKNVVELEPRDPAPYVLLSNLYADAGL 668

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           ++   +IR       L ++ G S +EV N+ H
Sbjct: 669 WDEVARIRSAMRDNNLNKETGLSWMEVENTTH 700



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 87/371 (23%), Positives = 178/371 (47%), Gaps = 39/371 (10%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIY 288
           G+ LH  +++   +D +  VAN+L+  YS CG++  A+  FD +  + D++SW ++ S  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH--------GYVT 340
           A       +L L   M      P+  +            +  F  +++        G V 
Sbjct: 127 ARNGAERGSLLLIGEMLESGLLPNAYTLCA-------AAHACFPHELYCLVGGVVLGLVH 179

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K+G     V V SAL DM  +   + S+  VF+    +++     L++  +     ++AV
Sbjct: 180 KMGLWGTDVAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAV 239

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCS 457
           E+F   +++G   D  T+S+      +SA   LGS RL   LH  A++ G  S+  VSC 
Sbjct: 240 ELFLDFLEDGFEPDRYTMSSM-----ISACTELGSVRLGLQLHSLALRMGLASDACVSCG 294

Query: 458 LMDAYSRCG---HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR-EALDMLEVMIQRG 513
           L+D Y++      ++ +++VFE++P  +V+ +T++++GY ++G+   + + +   M+   
Sbjct: 295 LVDMYAKSNIGQAMDYANKVFERMPKNDVISWTALISGYVQSGVQENKVMALFGEMLNES 354

Query: 514 LIPDKVTFLCVLAGC-----NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           + P+ +T+  +L  C     + SG      ++ ++  S + +       + ++ M   +G
Sbjct: 355 IKPNHITYSSILKSCASISDHDSGRQVHAHVIKSNQASAHTVG------NALVSMYAESG 408

Query: 569 ILDKAEELLQQ 579
            +++A  +  Q
Sbjct: 409 CMEEARRVFNQ 419



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 4/144 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           + SN  +  + + G+L  A + F+E+  R+++++  +ISG  K  + ++AL L+ +M+  
Sbjct: 486 FVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILT 545

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSV 162
           G+K +  T+ +VLS CS+ G   EG + + R +    GL   +   + +VDL  R G   
Sbjct: 546 GVKPNDVTYIAVLSACSHVGLVREGKE-YFRSMQRDHGLIPRMEHYACMVDLLARSGIVK 604

Query: 163 RALDLFDELPERNLA-TWNLMLRA 185
            AL+  +E+P +  A  W  +L A
Sbjct: 605 EALEFINEMPLKADALVWKTLLGA 628


>gi|302817788|ref|XP_002990569.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
 gi|300141737|gb|EFJ08446.1| hypothetical protein SELMODRAFT_131810 [Selaginella moellendorffii]
          Length = 564

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 167/577 (28%), Positives = 294/577 (50%), Gaps = 16/577 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESAST 112
           + K G +  A+ +F+ +      ++NL++          QAL L+ +MV  HGI+    T
Sbjct: 2   YGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRVT 61

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           F +  + CS  G   EG Q H R +  G   +L + S L+++Y R G +  A  +FD +P
Sbjct: 62  FVTAATACSLVGSLEEGKQFHSRFVESGLESSLILDSALMNMYGRCGSAEEARKIFDRIP 121

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            +N+  WN+M+ A+ +     E L +Y  M    ++P+ ++F  ++  C+    L+ G+ 
Sbjct: 122 VKNVVCWNVMIAAYAQNGHFSEALELYYDMN---LKPDRVTFLNVLHACT----LESGRL 174

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  V+  G ++ + FV NALV+ +  CGSL +AK+ FD I   DVISWN+++S+Y    
Sbjct: 175 IHQDVVSAG-LERDKFVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQG 233

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              +A ELF RM     +P+  +++  L   S    +   ++IH  +   G +     V 
Sbjct: 234 HRKEAFELFKRMDKAGLQPNSVTYLSLLPACSSLEQL---REIHQELADQGLEQDE-QVG 289

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           + L   Y K + +E SVAVFE    RS+     ++  ++  G    A++++  MV EG+ 
Sbjct: 290 NTLITAYNKFS-LEDSVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVR 348

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D V L   L A   ++  NL   R +H     +   +++ V+ ++++ Y +CG    + 
Sbjct: 349 PDAVALVCALDA--CTSVENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGKFAEAE 406

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF+ + +  V  + S++  Y+++G   +AL + E M   G  PD VT LC L  C+H G
Sbjct: 407 AVFQGMKTTTVATWNSLIGAYAQHGHATDALKLYERMELSGTRPDGVTLLCALFACSHLG 466

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           ++   +  ++ M   Y ++A   H+ C++D+  RAG +D+AEEL+   P       W++L
Sbjct: 467 LLDRAREFYSGMVEDYQVEAVPAHFGCLVDLFCRAGWIDEAEELIASMPVRPHISAWTAL 526

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
           L +C+ H +   G   A    EL+    + +  +S F
Sbjct: 527 LNACKAHNDMERGAWAACKAHELDSRRSSPFVVLSGF 563



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 129/449 (28%), Positives = 226/449 (50%), Gaps = 18/449 (4%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGL 212
           +Y + G    A  +F+ +   +  +WNLML A+C     D+ L ++ +M    G+  + +
Sbjct: 1   MYGKCGSVEEARAVFNSIKRSSCFSWNLMLGAYCNNGSGDQALELFKQMVDVHGIRADRV 60

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +F      CS+   L+EGKQ HS  ++ G ++ ++ + +AL++ Y  CGS  EA+K FD 
Sbjct: 61  TFVTAATACSLVGSLEEGKQFHSRFVESG-LESSLILDSALMNMYGRCGSAEEARKIFDR 119

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           IPV +V+ WN +++ YA      +ALEL++ M L   +P   +F+  L+  +    +  G
Sbjct: 120 IPVKNVVCWNVMIAAYAQNGHFSEALELYYDMNL---KPDRVTFLNVLHACT----LESG 172

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           + IH  V   G +     V +AL +M+GKC  +  +  VF+    R +   N+LM+  + 
Sbjct: 173 RLIHQDVVSAGLERDKF-VGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQ 231

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
            G+ K+A E+F  M   G+  + VT  + L A S     +L   R +H      G E + 
Sbjct: 232 QGHRKEAFELFKRMDKAGLQPNSVTYLSLLPACS-----SLEQLREIHQELADQGLEQDE 286

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V  +L+ AY++   +E S  VFE++   +VV +T ++ G   +G G  ALD+   M+  
Sbjct: 287 QVGNTLITAYNKFS-LEDSVAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVE 345

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G+ PD V  +C L  C     + EG+ +   ++    +  D    + +++M G+ G   +
Sbjct: 346 GVRPDAVALVCALDACTSVENLAEGRKIHRLVEGTTMV-TDVFVATAVVNMYGKCGKFAE 404

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           AE + Q          W+SL+ +   HG+
Sbjct: 405 AEAVFQGMK-TTTVATWNSLIGAYAQHGH 432



 Score =  132 bits (332), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 162/335 (48%), Gaps = 7/335 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +  N  ++ F K G L+ AK++FD +  RD++++N L+S   +  H K+A  L+  M   
Sbjct: 189 FVGNALVNMFGKCGSLSDAKRVFDRIAFRDVISWNALMSVYIQQGHRKEAFELFKRMDKA 248

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++ ++ T+ S+L  CS+     E   IH  +   G   +  +G+ L+  Y +      +
Sbjct: 249 GLQPNSVTYLSLLPACSSLEQLRE---IHQELADQGLEQDEQVGNTLITAYNKFSLE-DS 304

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           + +F+ +  R++ +W  M+    E       L +Y +M  EGV P+ ++    +  C+  
Sbjct: 305 VAVFERMKRRSVVSWTCMIMGMVEHGYGGRALDLYREMVVEGVRPDAVALVCALDACTSV 364

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L EG+++H  V     V  ++FVA A+V+ Y  CG   EA+  F  +    V +WNS+
Sbjct: 365 ENLAEGRKIHRLVEGTTMV-TDVFVATAVVNMYGKCGKFAEAEAVFQGMKTTTVATWNSL 423

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH-GYVTKLG 343
           +  YA +    DAL+L+ RM+L   RP   + +  L   S  G +   ++ + G V    
Sbjct: 424 IGAYAQHGHATDALKLYERMELSGTRPDGVTLLCALFACSHLGLLDRAREFYSGMVEDYQ 483

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            +    H    L D++ +   I+ +  +  S P R
Sbjct: 484 VEAVPAHF-GCLVDLFCRAGWIDEAEELIASMPVR 517



 Score = 51.6 bits (122), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 78/195 (40%), Gaps = 17/195 (8%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGH 59
           M+   + P    +      CTS+  L+    +    +    + +++ +   ++ + K G 
Sbjct: 342 MVVEGVRPDAVALVCALDACTSVENLAEGRKIHRLVEGTTMVTDVFVATAVVNMYGKCGK 401

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
              A+ +F  M    + T+N LI    +  H   AL LY+ M   G +    T    L  
Sbjct: 402 FAEAEAVFQGMKTTTVATWNSLIGAYAQHGHATDALKLYERMELSGTRPDGVTLLCALFA 461

Query: 120 CSNAG-------FYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           CS+ G       FY+  ++      +   FG        LVDL+ R G    A +L   +
Sbjct: 462 CSHLGLLDRAREFYSGMVEDYQVEAVPAHFGC-------LVDLFCRAGWIDEAEELIASM 514

Query: 172 PER-NLATWNLMLRA 185
           P R +++ W  +L A
Sbjct: 515 PVRPHISAWTALLNA 529


>gi|224107977|ref|XP_002314675.1| predicted protein [Populus trichocarpa]
 gi|222863715|gb|EEF00846.1| predicted protein [Populus trichocarpa]
          Length = 845

 Score =  270 bits (689), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 165/602 (27%), Positives = 304/602 (50%), Gaps = 35/602 (5%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           +A+ ++ +++  G      TF  VLS C+ +   TEG Q+H  ++ +GF  ++++ + L+
Sbjct: 122 KAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGFQVHGAIVKMGFERDMFVENSLI 181

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
             Y   G       +FD++ ERN+ +W  ++  + +     E + ++ +M   G+ PN +
Sbjct: 182 HFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFEMVEVGIRPNSV 241

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  C+    L  G+Q+ + + +L  ++VN  + NALVD Y  CG++ +A+K FD 
Sbjct: 242 TMVGVISACAKLQDLQLGEQVCTCIGELE-LEVNALMVNALVDMYMKCGAIDKARKIFDE 300

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
               +++ +N+I+S Y    L  + L +   M     RP   + +  ++  S   +V  G
Sbjct: 301 CVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSACSELDDVSCG 360

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV---------------------------- 364
           K  HGYV + G + G  +V +A+ +MY KC                              
Sbjct: 361 KWCHGYVLRNGLE-GWDNVCNAIINMYMKCGKQEMACRVFDRMLNKTRVSWNSLIAGFVR 419

Query: 365 ---IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
              +ES+  +F + P   L   N+++ +L+     K+A+E+F  M  EGI  D+VT+   
Sbjct: 420 NGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQSEGITADKVTMVGV 479

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
             A     + +L   + +H    K     ++ +  +L+D ++RCG  + + QVF K+   
Sbjct: 480 ASACGYLGALDLA--KWIHGYIKKKDIHFDMHLGTALVDMFARCGDPQSAMQVFNKMVKR 537

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +V  +T+ +   +  G G  A+++ + M+Q+G+ PD V F+ +L   +H G+V++G  +F
Sbjct: 538 DVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALSHGGLVEQGWHIF 597

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            SMK +YGI     HY CM+D+LGRAG+L +A  L+       + ++W SLL +CRVH N
Sbjct: 598 RSMKDIYGIAPQAVHYGCMVDLLGRAGLLSEALSLINSMQMEPNDVIWGSLLAACRVHKN 657

Query: 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
             I    A  + EL+P    ++  +SN Y+  G ++   ++R     +   +  G S IE
Sbjct: 658 VDIAAYAAERISELDPERTGIHVLLSNIYASAGRWDDVAKVRLHLKEKGAHKMPGSSSIE 717

Query: 662 VN 663
           +N
Sbjct: 718 IN 719



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 130/522 (24%), Positives = 229/522 (43%), Gaps = 74/522 (14%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           + +++  N  I  + + G ++  +++FD+M  R++V++  LI G  K    K+A+ L+ E
Sbjct: 171 ERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRGCYKEAVSLFFE 230

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           MV  GI+ ++ T   V+S C+       G Q+   +  L   +N  + + LVD+YM+ G 
Sbjct: 231 MVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELELEVNALMVNALVDMYMKCGA 290

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
             +A  +FDE  ++NL  +N ++  +       EVL +  +M   G  P+ ++    V  
Sbjct: 291 IDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGEMLKHGPRPDRITMLSAVSA 350

Query: 221 CSIGMLLDEGKQLHSHVIK---LGWVDVNIFVANALVDFYSACG---------------- 261
           CS    +  GK  H +V++    GW +    V NA+++ Y  CG                
Sbjct: 351 CSELDDVSCGKWCHGYVLRNGLEGWDN----VCNAIINMYMKCGKQEMACRVFDRMLNKT 406

Query: 262 -----SLI----------EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
                SLI           A K F  +P  D++SWN+++       +  +A+ELF  MQ 
Sbjct: 407 RVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQESMFKEAIELFRVMQS 466

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
                   + V   +     G +   K IHGY+ K    H  +H+ +AL DM+ +C   +
Sbjct: 467 EGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKDI-HFDMHLGTALVDMFARCGDPQ 525

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           S++ VF     R +    + + ++   GN   A+E+F  M+ +GI  D V     L ALS
Sbjct: 526 SAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGIKPDGVVFVALLTALS 585

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
                        H   ++ G+     +  S+ D Y                 +P  V +
Sbjct: 586 -------------HGGLVEQGWH----IFRSMKDIYG---------------IAPQAVHY 613

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
             +++   R G+  EAL ++  M    + P+ V +  +LA C
Sbjct: 614 GCMVDLLGRAGLLSEALSLINSM---QMEPNDVIWGSLLAAC 652



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 175/406 (43%), Gaps = 37/406 (9%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++N    N  +D ++K G ++ A+K+FDE   +++V YN ++S   +    ++ L +  E
Sbjct: 272 EVNALMVNALVDMYMKCGAIDKARKIFDECVDKNLVLYNTIMSNYVRQGLAREVLAVLGE 331

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+ HG +    T  S +S CS     + G   H  VL  G      + + ++++YM+ G 
Sbjct: 332 MLKHGPRPDRITMLSAVSACSELDDVSCGKWCHGYVLRNGLEGWDNVCNAIINMYMKCGK 391

Query: 161 SVRALDLFDE-------------------------------LPERNLATWNLMLRAFCEL 189
              A  +FD                                +P+ +L +WN M+ A  + 
Sbjct: 392 QEMACRVFDRMLNKTRVSWNSLIAGFVRNGDMESAWKIFSAMPDSDLVSWNTMIGALVQE 451

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           S   E + ++  M++EG+  + ++   +   C     LD  K +H ++ K   +  ++ +
Sbjct: 452 SMFKEAIELFRVMQSEGITADKVTMVGVASACGYLGALDLAKWIHGYIKKKD-IHFDMHL 510

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             ALVD ++ CG    A + F+ +   DV +W + +   A       A+ELF  M     
Sbjct: 511 GTALVDMFARCGDPQSAMQVFNKMVKRDVSAWTAAIGAMAMEGNGTGAIELFDEMLQQGI 570

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-GFDHGSVHVQSALTDMYGKCNVIESS 368
           +P    FV  L   S  G V  G  I   +  + G    +VH    + D+ G+  ++  +
Sbjct: 571 KPDGVVFVALLTALSHGGLVEQGWHIFRSMKDIYGIAPQAVHY-GCMVDLLGRAGLLSEA 629

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           +++  S     +E  + +  SLL +  +   V++  +  +    LD
Sbjct: 630 LSLINSM---QMEPNDVIWGSLLAACRVHKNVDIAAYAAERISELD 672



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 70/262 (26%), Positives = 130/262 (49%), Gaps = 26/262 (9%)

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA--PGRSLECC---NSLM 387
           KQ+H  +TK G +H  +    +LT++   C    + +  FES     ++LE     N +M
Sbjct: 50  KQLHSQITKNGLNHHPL----SLTNLISSC----TEMGTFESLEYAQKALELFIEDNGIM 101

Query: 388 -TSLLHSGNIK---------DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
            T  + S  I+          A+ +F  ++  G   D  T    L A + SA+   G   
Sbjct: 102 GTHYMFSSLIRGFSACGLGYKAIVVFRQLMCMGAVPDNFTFPFVLSACTKSAALTEGF-- 159

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H   +K GFE ++ V  SL+  Y  CG I+   +VF+K+   NVV +TS++ GY++ G
Sbjct: 160 QVHGAIVKMGFERDMFVENSLIHFYGECGEIDCMRRVFDKMSERNVVSWTSLIGGYAKRG 219

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
             +EA+ +   M++ G+ P+ VT + V++ C     ++ G+ V   +  +  ++ +    
Sbjct: 220 CYKEAVSLFFEMVEVGIRPNSVTMVGVISACAKLQDLQLGEQVCTCIGELE-LEVNALMV 278

Query: 558 SCMIDMLGRAGILDKAEELLQQ 579
           + ++DM  + G +DKA ++  +
Sbjct: 279 NALVDMYMKCGAIDKARKIFDE 300


>gi|356502788|ref|XP_003520198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 171/626 (27%), Positives = 320/626 (51%), Gaps = 13/626 (2%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDE--MPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++  N  I  + K G L  A+ LFD   M   D V++N +IS      +  +AL L+  M
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRM 239

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G+  +  TF + L    +  F   G+ IH  VL      ++Y+ + L+ +Y + G  
Sbjct: 240 QEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAVLKSNHFADVYVANALIAMYAKCGRM 299

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F+ +  R+  +WN +L    +     + L  +  M+  G +P+ +S   ++   
Sbjct: 300 EDAGRVFESMLCRDYVSWNTLLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAAS 359

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                L +GK++H++ I+ G +D N+ + N LVD Y+ C  +     +F+ +   D+ISW
Sbjct: 360 GRSGNLLKGKEVHAYAIRNG-LDSNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISW 418

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +I++ YA  +   +A+ LF ++Q+             L   S   +  F ++IHGYV K
Sbjct: 419 TTIIAGYAQNEFHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFK 478

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D   + +Q+A+ ++YG+   I+ +   FES   + +    S++T  +H+G   +A+E
Sbjct: 479 R--DLADIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSL 458
           +F  +    I  D + + + L     SA+ANL S +    +H   I+ GF     ++ SL
Sbjct: 537 LFYSLKQTNIQPDSIAIISAL-----SATANLSSLKKGKEIHGFLIRKGFFLEGPIASSL 591

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y+ CG +E S ++F  +   +++ +TS++N    +G G +A+ + + M  + +IPD 
Sbjct: 592 VDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDH 651

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TFL +L  C+HSG++ EG+  F  MK  Y ++   +HY+CM+D+L R+  L++A   ++
Sbjct: 652 ITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYHFVR 711

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P      +W +LL +C +H N+ +G   A  L++ +  +   Y+ +SN ++  G +  
Sbjct: 712 NMPIKPSSEIWCALLGACHIHSNKELGELAAKELLQSDTENSGKYALISNIFAADGRWND 771

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
             ++R       L ++ G S IEV++
Sbjct: 772 VEEVRLRMKGNGLKKNPGCSWIEVDN 797



 Score =  204 bits (520), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 157/623 (25%), Positives = 298/623 (47%), Gaps = 44/623 (7%)

Query: 6   LLPRVRTITTLA--PTCT-SIVPLSSSLLLD----SYCQPNPQ----------LNIYSSN 48
           L P  +++T L+  P  T S +  + SLLLD    +   P  Q          L+ + + 
Sbjct: 24  LKPAFQSLTLLSTHPLATPSRLEHAHSLLLDLCVAAKALPQGQQLHALLLKSHLSAFLAT 83

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLYDEMVSHG 105
           + +  + K G L  A K+FDEM  R + ++N L+      GK+    +A+ LY +M   G
Sbjct: 84  KLVLMYGKCGSLRDAVKVFDEMSERTIFSWNALMGAFVSSGKYL---EAIELYKDMRVLG 140

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +   A TF SVL  C   G    G +IH   +  G+G  +++ + L+ +Y + G    A 
Sbjct: 141 VAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGYGEFVFVCNALIAMYGKCGDLGGAR 200

Query: 166 DLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
            LFD   + + +  +WN ++ A        E L ++ +M+  GV  N  +F   ++G   
Sbjct: 201 VLFDGIMMEKEDTVSWNSIISAHVAEGNCLEALSLFRRMQEVGVASNTYTFVAALQGVED 260

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +  G  +H  V+K      +++VANAL+  Y+ CG + +A + F+ +   D +SWN+
Sbjct: 261 PSFVKLGMGIHGAVLKSNHF-ADVYVANALIAMYAKCGRMEDAGRVFESMLCRDYVSWNT 319

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S     +L  DAL  F  MQ   ++P   S +  +  + R+GN+  GK++H Y  + G
Sbjct: 320 LLSGLVQNELYSDALNYFRDMQNSGQKPDQVSVLNLIAASGRSGNLLKGKEVHAYAIRNG 379

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            D  ++ + + L DMY KC  ++     FE    + L    +++     +    +A+ +F
Sbjct: 380 LD-SNMQIGNTLVDMYAKCCCVKYMGHAFECMHEKDLISWTTIIAGYAQNEFHLEAINLF 438

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             +  +G+ +D + + + L+A S   S N    R +H    K    ++I +  ++++ Y 
Sbjct: 439 RKVQVKGMDVDPMMIGSVLRACSGLKSRNF--IREIHGYVFKRDL-ADIMLQNAIVNVYG 495

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
             GHI+ + + FE I S ++V +TS++     NG+  EAL++   + Q  + PD +  + 
Sbjct: 496 EVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQPDSIAIIS 555

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY------SCMIDMLGRAGILDKAEELL 577
            L+   +   +K+G       K ++G    +  +      S ++DM    G ++ + ++ 
Sbjct: 556 ALSATANLSSLKKG-------KEIHGFLIRKGFFLEGPIASSLVDMYACCGTVENSRKMF 608

Query: 578 QQTPGGGDCMMWSSLLRSCRVHG 600
                  D ++W+S++ +  +HG
Sbjct: 609 HSVK-QRDLILWTSMINANGMHG 630



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 51/200 (25%), Positives = 102/200 (51%), Gaps = 1/200 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +I   N  ++ + + GH++ A++ F+ + ++D+V++  +I+ C     P +AL L+  + 
Sbjct: 483 DIMLQNAIVNVYGEVGHIDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLK 542

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              I+  +    S LS  +N     +G +IH  ++  GF L   I S LVD+Y   G   
Sbjct: 543 QTNIQPDSIAIISALSATANLSSLKKGKEIHGFLIRKGFFLEGPIASSLVDMYACCGTVE 602

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  +F  + +R+L  W  M+ A       ++ + ++ KM  + V P+ ++F  ++  CS
Sbjct: 603 NSRKMFHSVKQRDLILWTSMINANGMHGCGNKAIALFKKMTDQNVIPDHITFLALLYACS 662

Query: 223 IGMLLDEGKQLHSHVIKLGW 242
              L+ EGK+    ++K G+
Sbjct: 663 HSGLMVEGKRFFE-IMKYGY 681


>gi|409032180|gb|AFV08644.1| EMP5 [Zea mays]
 gi|409032182|gb|AFV08645.1| EMP5 [Zea mays]
 gi|414878626|tpg|DAA55757.1| TPA: putative pentatricopeptide repeat family protein [Zea mays]
          Length = 776

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 179/615 (29%), Positives = 318/615 (51%), Gaps = 17/615 (2%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A +L DEMP R+ V+YNL+I    +   P  +L  +    +        T+++ L+ CS 
Sbjct: 55  AARLLDEMPRRNAVSYNLVIVAYSRAGLPALSLATFARARAWARVVDRFTYAAALAACSR 114

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
           A     G  +H  V+  G G  L++ + +  +Y R G    A  +FD   ER+  +WN +
Sbjct: 115 ALDVRTGKAVHAMVVLGGLGNGLFLSNSVASMYARCGEMGEARRVFDAAEERDDVSWNAL 174

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL----DEG-----KQL 233
           L  +      +E L +++ M   G+  N  +   +++ C+         D G     + +
Sbjct: 175 LSGYVRAGAREETLEVFSLMCRHGLGWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAV 234

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD--- 290
           H  V+K G +D ++F+A+A++D Y+  G+L  A   F  +P  +VI  N++++ +     
Sbjct: 235 HGCVVKAG-LDADLFLASAMIDMYAKRGALTNAVALFKSVPDPNVIVLNAMIAGFCREEA 293

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            D+  +AL L+  +Q    +PS  SF   L   +  G   FGKQIHG V K  F  G V+
Sbjct: 294 ADVAREALGLYSELQSRGMQPSEFSFSSILRACNLAGEFGFGKQIHGQVLKHSF-QGDVY 352

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           + SAL D+Y     +E     F S P + +    S+++  + +   ++A+ +F   V  G
Sbjct: 353 IGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQESVRCG 412

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D   +S+ + A +  A A  G    + C A+KSGF    A+  S +   +R G ++ 
Sbjct: 413 LRPDVFAMSSVMNACASLAVARTGE--QIQCLAVKSGFNRFTAMGNSFIHMCARSGDVDA 470

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCN 529
           + + F+++ S +VV ++++++ ++ +G  R+AL +   M+   + P +++TFL +L  C+
Sbjct: 471 ATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILTACS 530

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           H G+V EG   +  M   YG+    +H +C++D+LGRAG L  AE  ++ +    D ++W
Sbjct: 531 HGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDAVVW 590

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            SLL SCR+HG+   G+ VA+ +M+LEP   A Y  + N Y + GE   + + R+    R
Sbjct: 591 RSLLASCRIHGDMERGQLVADKIMDLEPTSSASYVILYNMYLDAGELSSASKTRDLMKER 650

Query: 650 KLTRDIGHSLIEVNS 664
            + ++ G S IE++S
Sbjct: 651 GVKKEPGLSWIELSS 665



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 192/393 (48%), Gaps = 15/393 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN     + + G +  A+++FD    RD V++N L+SG  +    ++ L ++  M  HG+
Sbjct: 140 SNSVASMYARCGEMGEARRVFDAAEERDDVSWNALLSGYVRAGAREETLEVFSLMCRHGL 199

Query: 107 KESASTFSSVLSVC---------SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
             ++    S++  C          + G       +H  V+  G   +L++ S ++D+Y +
Sbjct: 200 GWNSFALGSIIKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLDADLFLASAMIDMYAK 259

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD---EVLRMYNKMKAEGVEPNGLSF 214
            G    A+ LF  +P+ N+   N M+  FC     D   E L +Y+++++ G++P+  SF
Sbjct: 260 RGALTNAVALFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSF 319

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++R C++      GKQ+H  V+K  +   ++++ +AL+D YS  G + +  + F  +P
Sbjct: 320 SSILRACNLAGEFGFGKQIHGQVLKHSF-QGDVYIGSALIDLYSGSGCMEDGYRCFRSLP 378

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DV+ W S++S     +L  +AL LF     C  RP + +    +N  +       G+Q
Sbjct: 379 KQDVVIWTSVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQ 438

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           I     K GF+  +  + ++   M  +   ++++   F+    R +   +++++S  H G
Sbjct: 439 IQCLAVKSGFNRFTA-MGNSFIHMCARSGDVDAATRRFQEMESRDVVSWSAVISSHAHHG 497

Query: 395 NIKDAVEMFGFMVDEGIG-LDEVTLSTTLKALS 426
             +DA+ +F  M+D  +   +E+T  + L A S
Sbjct: 498 CARDALCVFNEMLDAKVAPPNEITFLSILTACS 530



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 123/491 (25%), Positives = 232/491 (47%), Gaps = 33/491 (6%)

Query: 144 NLYIGSPLVDLYMRMG--PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201
           +L++ + L+  Y R+G    + A  L DE+P RN  ++NL++ A+     P   L  + +
Sbjct: 33  SLFLRNCLLASYCRLGVGAPLHAARLLDEMPRRNAVSYNLVIVAYSRAGLPALSLATFAR 92

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
            +A     +  ++   +  CS  + +  GK +H+ V+  G +   +F++N++   Y+ CG
Sbjct: 93  ARAWARVVDRFTYAAALAACSRALDVRTGKAVHAMVVLGG-LGNGLFLSNSVASMYARCG 151

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV---- 317
            + EA++ FD     D +SWN+++S Y       + LE+F  M  CR      SF     
Sbjct: 152 EMGEARRVFDAAEERDDVSWNALLSGYVRAGAREETLEVFSLM--CRHGLGWNSFALGSI 209

Query: 318 ----EFLNFASRTGNVYFGK---QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
                  +  +  G+V  G+    +HG V K G D   + + SA+ DMY K   + ++VA
Sbjct: 210 IKCCASSSSYAAAGDVGGGRIAEAVHGCVVKAGLD-ADLFLASAMIDMYAKRGALTNAVA 268

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF---MVDEGIGLDEVTLSTTLKALSV 427
           +F+S P  ++   N+++           A E  G    +   G+   E + S+ L+A ++
Sbjct: 269 LFKSVPDPNVIVLNAMIAGFCREEAADVAREALGLYSELQSRGMQPSEFSFSSILRACNL 328

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           +     G  + +H   +K  F+ ++ +  +L+D YS  G +E  ++ F  +P  +VV +T
Sbjct: 329 AGEFGFG--KQIHGQVLKHSFQGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWT 386

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           S+++G  +N +  EAL + +  ++ GL PD      V+  C    + + G+ +   +   
Sbjct: 387 SVISGCVQNELFEEALRLFQESVRCGLRPDVFAMSSVMNACASLAVARTGEQI-QCLAVK 445

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG------- 600
            G +      +  I M  R+G +D A    Q+     D + WS+++ S   HG       
Sbjct: 446 SGFNRFTAMGNSFIHMCARSGDVDAATRRFQEME-SRDVVSWSAVISSHAHHGCARDALC 504

Query: 601 --NEIIGRRVA 609
             NE++  +VA
Sbjct: 505 VFNEMLDAKVA 515



 Score = 94.7 bits (234), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/248 (25%), Positives = 118/248 (47%), Gaps = 2/248 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q ++Y  +  ID +  SG +    + F  +P +D+V +  +ISGC +    ++AL L+ E
Sbjct: 348 QGDVYIGSALIDLYSGSGCMEDGYRCFRSLPKQDVVIWTSVISGCVQNELFEEALRLFQE 407

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
            V  G++      SSV++ C++      G QI C  +  GF     +G+  + +  R G 
Sbjct: 408 SVRCGLRPDVFAMSSVMNACASLAVARTGEQIQCLAVKSGFNRFTAMGNSFIHMCARSGD 467

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVR 219
              A   F E+  R++ +W+ ++ +        + L ++N+M  A+   PN ++F  ++ 
Sbjct: 468 VDAATRRFQEMESRDVVSWSAVISSHAHHGCARDALCVFNEMLDAKVAPPNEITFLSILT 527

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF-DFIPVDDV 278
            CS G L+DEG + +  +     +   I     +VD     G L +A+    D    DD 
Sbjct: 528 ACSHGGLVDEGLRYYGIMNDEYGLSPTIKHCTCVVDLLGRAGRLADAEAFIRDSAFHDDA 587

Query: 279 ISWNSIVS 286
           + W S+++
Sbjct: 588 VVWRSLLA 595


>gi|225457861|ref|XP_002279169.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g77010, mitochondrial-like [Vitis vinifera]
          Length = 685

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 187/678 (27%), Positives = 325/678 (47%), Gaps = 106/678 (15%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           NR +  + +   +  A++LF+EMP R+  ++N +I G  K     ++L L+D M      
Sbjct: 46  NRLLQMYSRCNSMREAQQLFEEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMP----H 101

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           + A +++ V+S     GF  EG              NL +                A  L
Sbjct: 102 KDAFSWNVVIS-----GFAKEG--------------NLEV----------------ARRL 126

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP---NGLSFCYMVRGCSIG 224
           F+E+P +N   WN M+  +    RP E + ++  +    +E    +      +V  C+  
Sbjct: 127 FNEMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNL 186

Query: 225 MLLDEGKQLHSHVI-------------------KLGWVDV-----------NIFVANALV 254
             LD GKQ+H+ ++                   K G +D            + F  +AL+
Sbjct: 187 GALDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALI 246

Query: 255 DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
             Y++CG + +A++ F       V+ WNS++S Y   +   +ALELF  M+    +    
Sbjct: 247 SGYASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYS 306

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC------------ 362
           +F   L+  S  G +  G Q+H +V K+GF +  + + SAL DMY KC            
Sbjct: 307 TFASVLSACSTLGIIDQGIQVHAHVYKVGFTN-DIIIDSALVDMYSKCRRPDDACKLFSD 365

Query: 363 -------------------NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                                I+ +  +F++ P +SL   NS++     +    +A+++F
Sbjct: 366 LQAYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLF 425

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M   G+ +D+ +L+  + A +  +S  LG         I  G E +  +S SL+D Y 
Sbjct: 426 CEMNKLGLRMDKFSLAGVISACASISSLELGEQIFARATII--GLEFDQIISTSLVDFYC 483

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG +E   ++F+++   + V + S++ GY+ NG G EAL++ + M   G+ P  +TF+ 
Sbjct: 484 KCGLVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVG 543

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL+ C+H G+V+EG+  F +MK  Y I+   +HYSCM+D+  RAG+L+ A  L++Q P  
Sbjct: 544 VLSACDHCGLVEEGRKWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLK 603

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
            D  MWSS+LR C  HGN I+G++VA  +++L+P +   Y Q+S  Y+   ++  S Q+R
Sbjct: 604 ADTSMWSSVLRGCVAHGNNILGKKVAKRIIDLDPENSGAYVQLSGIYATFEDWGRSAQVR 663

Query: 644 ETALARKLTRDIGHSLIE 661
           +    +K+ +  G S  +
Sbjct: 664 KLMYDKKIPKVPGCSWAD 681



 Score =  145 bits (366), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 128/562 (22%), Positives = 241/562 (42%), Gaps = 103/562 (18%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N +S N  I+ ++KSG    + +LFD MP +D  ++N++ISG  K  + + A  L++
Sbjct: 69  PKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPHKDAFSWNVVISGFAKEGNLEVARRLFN 128

Query: 100 EM----------VSHGI------KESASTF------------------SSVLSVCSNAGF 125
           EM          + HG       KE+   F                  ++V+  C+N G 
Sbjct: 129 EMPWKNGIAWNSMIHGYACNGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGA 188

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG---PSVRALDLFDELPERNLAT---- 178
              G QIH R++      +  +GS LV+LY + G    +   L+L  E    +L+     
Sbjct: 189 LDCGKQIHARIVVDEVEFDSVLGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISG 248

Query: 179 ------------------------WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
                                   WN M+  +   +   E L ++N M+ +GV+ +  +F
Sbjct: 249 YASCGRMNDARRIFCLKSNACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTF 308

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA--------------- 259
             ++  CS   ++D+G Q+H+HV K+G+ + +I + +ALVD YS                
Sbjct: 309 ASVLSACSTLGIIDQGIQVHAHVYKVGFTN-DIIIDSALVDMYSKCRRPDDACKLFSDLQ 367

Query: 260 ----------------CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
                           CG + +A++ FD +P   +ISWNS++  ++      +AL+LF  
Sbjct: 368 AYDTILLNSMITVYSNCGRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCE 427

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M     R    S    ++  +   ++  G+QI    T +G +   + + ++L D Y KC 
Sbjct: 428 MNKLGLRMDKFSLAGVISACASISSLELGEQIFARATIIGLEFDQI-ISTSLVDFYCKCG 486

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
           ++E    +F+          NS++     +G+  +A+ +F  M   G+   ++T    L 
Sbjct: 487 LVEHGRKLFDRMMKSDEVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTDITFVGVLS 546

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
           A         G  +  +   +       I     ++D Y+R G +E +  + E++P   +
Sbjct: 547 ACDHCGLVEEGR-KWFYAMKLDYHINPGIEHYSCMVDLYARAGLLEDAMNLIEQMPLKAD 605

Query: 483 VVCFTSIMNG---YSRNGMGRE 501
              ++S++ G   +  N +G++
Sbjct: 606 TSMWSSVLRGCVAHGNNILGKK 627



 Score =  117 bits (293), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 127/576 (22%), Positives = 246/576 (42%), Gaps = 113/576 (19%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSPLVDLYMRMGPSVRALDLFDE 170
           + +  L  C+N G    G  +H   L  G   + L IG+ L+ +Y R      A  LF+E
Sbjct: 8   SLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLFEE 67

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P+RN  +WN M+  + +     + L +++ M      P+  +F +              
Sbjct: 68  MPKRNCFSWNTMIEGYLKSGSKGKSLELFDSM------PHKDAFSW-------------- 107

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
                               N ++  ++  G+L  A++ F+ +P  + I+WNS++  YA 
Sbjct: 108 --------------------NVVISGFAKEGNLEVARRLFNEMPWKNGIAWNSMIHGYAC 147

Query: 291 YDLIFDALELFFRMQLCR-KRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
                +A+ LF  + L   +R    +FV    +   +  G +  GKQIH  +     +  
Sbjct: 148 NGRPKEAVGLFKDLSLNPLERFCGDTFVLATVVGACTNLGALDCGKQIHARIVVDEVEFD 207

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFE--SAP--------------------GRSLEC--- 382
           SV + S+L ++YGKC  I+S+  V      P                     R + C   
Sbjct: 208 SV-LGSSLVNLYGKCGDIDSANHVLNLMKEPDAFSLSALISGYASCGRMNDARRIFCLKS 266

Query: 383 ------CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
                  NS+++  + +    +A+E+F  M  +G+  D  T ++ L A S     + G  
Sbjct: 267 NACVVLWNSMISGYVANNEALEALELFNNMRRKGVQEDYSTFASVLSACSTLGIIDQGI- 325

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSR-------------------------------C 465
             +H    K GF ++I +  +L+D YS+                               C
Sbjct: 326 -QVHAHVYKVGFTNDIIIDSALVDMYSKCRRPDDACKLFSDLQAYDTILLNSMITVYSNC 384

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G I+ + Q+F+ +PS +++ + S++ G+S+N    EALD+   M + GL  DK +   V+
Sbjct: 385 GRIDDARQIFDTMPSKSLISWNSMIVGFSQNACPIEALDLFCEMNKLGLRMDKFSLAGVI 444

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C     ++ G+ +F +  ++ G++ D+   + ++D   + G+++   +L  +     D
Sbjct: 445 SACASISSLELGEQIF-ARATIIGLEFDQIISTSLVDFYCKCGLVEHGRKLFDRMM-KSD 502

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANIL--MELEPVD 619
            + W+S+L     +G+ I    V + +  + ++P D
Sbjct: 503 EVPWNSMLMGYATNGHGIEALNVFDQMRSVGVQPTD 538



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 55/270 (20%), Positives = 118/270 (43%), Gaps = 47/270 (17%)

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
           + S    L   +  G++Y G+ +H    K G  H  + + + L  MY +CN +  +  +F
Sbjct: 6   LHSLARQLGSCNNYGSIYRGRLLHILFLKSGVLHSVLSIGNRLLQMYSRCNSMREAQQLF 65

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           E  P R+    N+++   L SG+   ++E+F  M                          
Sbjct: 66  EEMPKRNCFSWNTMIEGYLKSGSKGKSLELFDSMPH------------------------ 101

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
                       K  F  N+ +S      +++ G++E++ ++F ++P  N + + S+++G
Sbjct: 102 ------------KDAFSWNVVIS-----GFAKEGNLEVARRLFNEMPWKNGIAWNSMIHG 144

Query: 493 YSRNGMGREALDMLEVM----IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           Y+ NG  +EA+ + + +    ++R    D      V+  C + G +  G+ + ++   V 
Sbjct: 145 YACNGRPKEAVGLFKDLSLNPLER-FCGDTFVLATVVGACTNLGALDCGKQI-HARIVVD 202

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            ++ D    S ++++ G+ G +D A  +L 
Sbjct: 203 EVEFDSVLGSSLVNLYGKCGDIDSANHVLN 232


>gi|225430410|ref|XP_002282982.1| PREDICTED: pentatricopeptide repeat-containing protein At1g08070
           [Vitis vinifera]
          Length = 599

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/556 (26%), Positives = 300/556 (53%), Gaps = 6/556 (1%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +  T  SVL++        +  QIH + +        +I + +++ ++       A  +F
Sbjct: 2   TIQTPKSVLALIETCTNIQQLKQIHAKSIISSLSYTQFIITKIINSFLSHACLDYATQVF 61

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGMLL 227
           ++  E +   +N M+RA+     P   + +YNKM+A + +  +  ++ ++ + C+    +
Sbjct: 62  NQTQEPDGFIYNAMIRAYSSSQTPCVAISIYNKMRACQNILGDKYTYPFVFKACASQFAV 121

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           ++GK++H  ++++G+ +++ F+ ++L++FY  CG +  A++ FD     DV+ WN++++ 
Sbjct: 122 EKGKEVHGVIVRIGY-ELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITG 180

Query: 288 YADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
           YA   ++ D+  +F  M ++   RP+  + +  +     + N+  G+ IHGY+ K     
Sbjct: 181 YARQGMVLDSFGVFKEMVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLR 240

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V +++AL ++Y KC  ++ +  +F+  P ++    NSL+      G++ + +E+   M
Sbjct: 241 EGVKLEAALINLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREM 300

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
               +  D  T+S  L A +   + NLG+   +H  A K G   ++ +  +L+D Y++CG
Sbjct: 301 HLSNLKPDRFTVSGVLSACAQMGAFNLGN--WVHRFAEKKGI-WDVFIGTALIDMYAKCG 357

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            I  + +VF+++   NV  + +I++GY+ +G    A+++   M + G  PD +TFL VL 
Sbjct: 358 FIGAARKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLH 417

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C HSG+V+ G+  F+ M   Y I    +HY CM+D+LGRAG+L +A EL++      + 
Sbjct: 418 ACAHSGLVENGKQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNV 477

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
           ++W +LL +C +HGN  IG   A+ +++L  +D   Y  ++N Y+    F     +RE  
Sbjct: 478 VVWGALLSACSIHGNIEIGEWAAHHMIKLNAMDGGSYVILANLYASAQRFNRVKAVREMM 537

Query: 647 LARKLTRDIGHSLIEV 662
           + + + +  G S+IE+
Sbjct: 538 VEKGICKSHGCSMIEI 553



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 82/298 (27%), Positives = 155/298 (52%), Gaps = 8/298 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+ +  +  ++ ++  G + +A+++FDE  A+D+V +N LI+G  +      +  ++ E
Sbjct: 137 ELDGFLQSSLLNFYMVCGEIGNAQQVFDEFDAKDVVFWNALITGYARQGMVLDSFGVFKE 196

Query: 101 MVS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS---LGFGLNLYIGSPLVDLYM 156
           MV    ++ +  T   ++  C  +     G  IH  ++    L  G+ L   + L++LY+
Sbjct: 197 MVEVKEVRPNEGTMMGLIVACIESKNLKLGRAIHGYMMKDMVLREGVKL--EAALINLYV 254

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A  LFDE+PE+N   WN ++  +C++   +EV+ +  +M    ++P+  +   
Sbjct: 255 KCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDRFTVSG 314

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++  C+     + G  +H    K G  DV  F+  AL+D Y+ CG +  A+K FD +   
Sbjct: 315 VLSACAQMGAFNLGNWVHRFAEKKGIWDV--FIGTALIDMYAKCGFIGAARKVFDQMNER 372

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
           +V +WN+I+S YA +     A+ELF  M+    RP   +F+  L+  + +G V  GKQ
Sbjct: 373 NVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENGKQ 430



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 67/237 (28%), Positives = 127/237 (53%), Gaps = 2/237 (0%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I+ +VK G+L+ A+KLFDE+P ++ V +N LI G  +     + + L  EM    +K   
Sbjct: 250 INLYVKCGYLDGARKLFDEIPEKNTVVWNSLICGYCQIGSLNEVIELLREMHLSNLKPDR 309

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T S VLS C+  G +  G  +H      G   +++IG+ L+D+Y + G    A  +FD+
Sbjct: 310 FTVSGVLSACAQMGAFNLGNWVHRFAEKKGI-WDVFIGTALIDMYAKCGFIGAARKVFDQ 368

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + ERN+ATWN +L  +    + +  + ++++M+  G  P+ ++F  ++  C+   L++ G
Sbjct: 369 MNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHSGLVENG 428

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
           KQ    +++   +   +     +VD     G L EA++    + V+ +V+ W +++S
Sbjct: 429 KQYFDLMLQYYKIPPRVEHYGCMVDLLGRAGLLQEARELIKMMVVEPNVVVWGALLS 485



 Score = 68.2 bits (165), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 59/256 (23%), Positives = 108/256 (42%), Gaps = 35/256 (13%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           + L P   T++ +   C  +   +    +  + +     +++     ID + K G + +A
Sbjct: 303 SNLKPDRFTVSGVLSACAQMGAFNLGNWVHRFAEKKGIWDVFIGTALIDMYAKCGFIGAA 362

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           +K+FD+M  R++ T+N ++SG       + A+ L+ EM   G +  + TF +VL  C+++
Sbjct: 363 RKVFDQMNERNVATWNAILSGYASHGQAESAIELFSEMRESGARPDSITFLAVLHACAHS 422

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
           G    G Q           L  Y   P V+ Y  M          D L    L       
Sbjct: 423 GLVENGKQY------FDLMLQYYKIPPRVEHYGCM---------VDLLGRAGL------- 460

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
                L    E+++M        VEPN + +  ++  CSI   ++ G+    H+IKL  +
Sbjct: 461 -----LQEARELIKMMV------VEPNVVVWGALLSACSIHGNIEIGEWAAHHMIKLNAM 509

Query: 244 DVNIFVANALVDFYSA 259
           D   +V   L + Y++
Sbjct: 510 DGGSYV--ILANLYAS 523


>gi|302764012|ref|XP_002965427.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
 gi|300166241|gb|EFJ32847.1| hypothetical protein SELMODRAFT_84339 [Selaginella moellendorffii]
          Length = 495

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 153/489 (31%), Positives = 266/489 (54%), Gaps = 4/489 (0%)

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           ++G+ L+++Y + G    A + F+ +  RN+ +W+ M+ A+ +    D+ L ++ KM+ E
Sbjct: 11  FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           GVEPN ++F  ++  C+    +++G+ +H    +   +DV + V  ALV  Y  C  LIE
Sbjct: 71  GVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKK-LDVGLIVGTALVGMYGKCSRLIE 129

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A++ FD I   DV++W++++S YA    + +A++LF  M L   RP+    +  L   S 
Sbjct: 130 ARQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSS 189

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G +  GK  H  V   GF    V   + L  MYGKC  + S+ AVF     R L   ++
Sbjct: 190 AGALAEGKMTHELVVICGFG-ADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSA 248

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++  +   G+ KDA   F  M  EG+  D VT  + L A S+  +   G+  ++H     
Sbjct: 249 MLAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGN--VIHTRIRA 306

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            GF+S + +  SL+D Y +CG ++ +  +F+++   NV+ +T+++    ++  G+EAL++
Sbjct: 307 EGFQSVMYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMITACVQHEQGKEALEL 366

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            E M + G+ PD+V FL ++  C+HSG+V+EG++ F  M          +H+  M+D+LG
Sbjct: 367 FEEMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLG 426

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           R+G L++AEEL++  P     + W++LL +C+ H +     RVA  ++ L P     Y  
Sbjct: 427 RSGKLNEAEELMEFMPVEPGVVGWNTLLSACKTHNDTERAGRVAGGMLVLGPGHAGPYVS 486

Query: 626 VSNFYSEIG 634
            SN  S  G
Sbjct: 487 FSNILSGKG 495



 Score =  197 bits (500), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 116/448 (25%), Positives = 225/448 (50%), Gaps = 4/448 (0%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           +  N  ++ + K G +  A++ F+ M  R++++++ +++   +     QAL L+ +M   
Sbjct: 11  FVGNSLLNMYGKCGGVEEAREFFESMTHRNVISWSTMVAAYAQRGDHDQALVLFQKMEEE 70

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++ +  TF SVL  C+NA    +G  IH         + L +G+ LV +Y +    + A
Sbjct: 71  GVEPNEVTFLSVLDACANAEAVEQGEMIHRLAARKKLDVGLIVGTALVGMYGKCSRLIEA 130

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD + E+++ TW+ M+ A+ +L    E ++++  M  +GV PN +    ++  CS  
Sbjct: 131 RQVFDGIVEKDVVTWSTMISAYAQLGHVREAIQLFGYMNLDGVRPNEIILMSILGACSSA 190

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L EGK  H  V+  G+   ++   N L+  Y  CG L  AK  F  +   D+ISW+++
Sbjct: 191 GALAEGKMTHELVVICGF-GADVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAM 249

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +++ A++    DA   F RM L   +P   +FV  L+  S  G +  G  IH  +   GF
Sbjct: 250 LAVIAEHGHCKDAFVHFRRMDLEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEGF 309

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
               ++++++L DMYGKC  ++++  +F+    R++    +++T+ +     K+A+E+F 
Sbjct: 310 -QSVMYIENSLIDMYGKCGSLQAARGIFDRMSHRNVITWTTMITACVQHEQGKEALELFE 368

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M   G+  D+V   + + + S S     G    L     +S F   +     ++D   R
Sbjct: 369 EMEKAGVQPDQVAFLSIIHSCSHSGLVEEGRIYFLKMVEDQS-FTPGVEHFVGMLDLLGR 427

Query: 465 CGHIELSHQVFEKIP-SPNVVCFTSIMN 491
            G +  + ++ E +P  P VV + ++++
Sbjct: 428 SGKLNEAEELMEFMPVEPGVVGWNTLLS 455



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 71/245 (28%), Positives = 129/245 (52%), Gaps = 1/245 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ + N  I  + K G L SAK +F  M  RD+++++ +++   +  H K A   +  M 
Sbjct: 211 DVSTGNTLIKMYGKCGDLASAKAVFGGMERRDLISWSAMLAVIAEHGHCKDAFVHFRRMD 270

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+K    TF S+L  CS  G   EG  IH R+ + GF   +YI + L+D+Y + G   
Sbjct: 271 LEGVKPDYVTFVSLLDACSLLGALVEGNVIHTRIRAEGFQSVMYIENSLIDMYGKCGSLQ 330

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD +  RN+ TW  M+ A  +  +  E L ++ +M+  GV+P+ ++F  ++  CS
Sbjct: 331 AARGIFDRMSHRNVITWTTMITACVQHEQGKEALELFEEMEKAGVQPDQVAFLSIIHSCS 390

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              L++EG+     +++       +     ++D     G L EA++  +F+PV+  V+ W
Sbjct: 391 HSGLVEEGRIYFLKMVEDQSFTPGVEHFVGMLDLLGRSGKLNEAEELMEFMPVEPGVVGW 450

Query: 282 NSIVS 286
           N+++S
Sbjct: 451 NTLLS 455


>gi|225428647|ref|XP_002281535.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic [Vitis vinifera]
 gi|297741370|emb|CBI32501.3| unnamed protein product [Vitis vinifera]
          Length = 697

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 156/538 (28%), Positives = 289/538 (53%), Gaps = 11/538 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH ++++ G   N ++ + L++ Y+  G    A  +F   P +N+ +W +++    +  
Sbjct: 42  QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKND 101

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E + ++ +M     +PN ++   ++   +   L+   K +H   ++ G+ + N+FV 
Sbjct: 102 CFVEAIDVFREMIMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF-EGNVFVE 160

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALVD YS  G +  A++ F+ +   +V++WN+IVS Y+D+    +A++LF    L R++
Sbjct: 161 TALVDMYSKFGCMGVARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLF---NLMRRK 217

Query: 311 PSIRSFVEFLNFASRT---GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             +  F   ++    +   G +  G  IHG++ + G+++   H+++AL D+Y   N ++ 
Sbjct: 218 GLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDK-HIKTALMDIYVSHNCVDD 276

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALS 426
           +  VF     + +     ++T      +   A++ F  M+  + + LD + L   L + S
Sbjct: 277 AHRVFSEMSVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIALMGILSSCS 336

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            S +   G  R +H  AIK+ F +NI V  +++D Y+ CG++E + + F  +   +VVC+
Sbjct: 337 HSGALQQG--RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCW 394

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++ G   NG G +A+D+   M   GL PD+ TF+ VL  C+H+GMV EG  +F  M  
Sbjct: 395 NAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVK 454

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
              +  + QHY+C+ID+LGRAG LD A   +   P   D  ++S+LL +CR+HGN  +G 
Sbjct: 455 TSHVIPNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLGH 514

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            ++  + E+EP D   Y  +SN Y+  G +E     R +  ++++ +D G S IE+N 
Sbjct: 515 EISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRMKKDPGFSSIEINQ 572



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 112/452 (24%), Positives = 224/452 (49%), Gaps = 9/452 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N + SN  ++ +V  G L  AK++F   P +++V++ +LISG  K     +A+ ++ EM+
Sbjct: 55  NTFLSNSLMNAYVYCGLLADAKQIFHHTPYKNVVSWTILISGLAKNDCFVEAIDVFREMI 114

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               K +A T SSVL   +N G       +HC  +  GF  N+++ + LVD+Y + G   
Sbjct: 115 MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC- 221
            A  LF+ + ERN+ TWN ++  + +    +E + ++N M+ +G+  +  +   ++    
Sbjct: 175 VARQLFESMSERNVVTWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S+G  L  G  +H  +I+ G+ + +  +  AL+D Y +   + +A + F  + V DV +W
Sbjct: 235 SVG-CLQVGTGIHGFIIRTGYEN-DKHIKTALMDIYVSHNCVDDAHRVFSEMSVKDVAAW 292

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCR--KRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
             +++ ++       A++ F +M   +  K  SI + +  L+  S +G +  G+++H   
Sbjct: 293 TLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSI-ALMGILSSCSHSGALQQGRRVHALA 351

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K  F + ++ V SA+ DMY  C  +E +   F     + + C N+++     +G   DA
Sbjct: 352 IKTCFAN-NIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDA 410

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +++F  M   G+  DE T  + L A S +     G  ++ +     S    N+     ++
Sbjct: 411 IDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEG-LQIFYHMVKTSHVIPNLQHYACVI 469

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
           D   R G ++ ++     +P  P+   +++++
Sbjct: 470 DILGRAGQLDAAYSFINNMPFQPDFDVYSTLL 501


>gi|359488803|ref|XP_002272525.2| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g09950 [Vitis vinifera]
          Length = 1291

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 176/619 (28%), Positives = 320/619 (51%), Gaps = 20/619 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV-SHGIKESAST 112
           + K   L +A+K+FDE P  ++  +N  +    + +  ++ L L+  M+ + G      T
Sbjct: 46  YAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREKQWEETLRLFHLMICTAGEAPDNFT 105

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGF-------GLNLYIGSPLVDLYMRMGPSVRAL 165
               L  C+       G  IH      GF       G ++++GS LV+LY + G    AL
Sbjct: 106 IPIALKACAGLRMLELGKVIH------GFAKKNDEIGSDMFVGSALVELYSKCGQMGEAL 159

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIG 224
            +F+E    +   W  M+  + + + P+E L ++++M   + V  + ++   +V  C+  
Sbjct: 160 KVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQL 219

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           + +  G  +H  VI+  + D ++ + N+L++ Y+  G    A   F  +P  DVISW+++
Sbjct: 220 LNVKAGSCVHGLVIRREF-DGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTM 278

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ YA+ +   +AL LF  M   R  P+  + V  L   + + N+  GK+IH      GF
Sbjct: 279 IACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGF 338

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +     V +AL DMY KC+  + +V +F+  P + +    +L++    +G    ++ +F 
Sbjct: 339 EL-DFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFR 397

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+ +GI  D V +   L A S         C  LH   ++SGF SN+ V  SL++ YS+
Sbjct: 398 NMLSDGIQPDAVAVVKILAASSELGIFQQALC--LHGYVVRSGFNSNVFVGASLIELYSK 455

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLC 523
           CG +  + ++F+ +   +VV ++S++  Y  +G G EAL++ + M++   + P+ VTFL 
Sbjct: 456 CGSLGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLS 515

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           +L+ C+H+G+V+EG  +F+ M   Y +  D +H+  M+D+LGR G L KA +++ + P  
Sbjct: 516 ILSACSHAGLVEEGLKIFDRMVHDYQLRPDSEHFGIMVDLLGRIGQLGKAMDIINRMPIP 575

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W +LL +CR+H N  +G   A  L  L+P     Y  +SN Y+  G+++   ++R
Sbjct: 576 AGPHVWGALLGACRIHHNIEMGEAAAKNLFWLDPSHAGYYILLSNIYAVDGKWDNVAELR 635

Query: 644 ETALARKLTRDIGHSLIEV 662
                R L +  G S++EV
Sbjct: 636 TRIKERGLKKMFGQSMVEV 654



 Score =  218 bits (555), Expect = 9e-54,   Method: Compositional matrix adjust.
 Identities = 130/438 (29%), Positives = 232/438 (52%), Gaps = 12/438 (2%)

Query: 231  KQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            K+ H+ +   G   D  I    A++  Y +   +  A   F+ IP      WN ++  +A
Sbjct: 737  KKTHAKIFAYGLQYDSRILTKFAIM--YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFA 794

Query: 290  DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                   +LEL+ +M     +P   +F   L   +   ++  GK IH ++   G  +  +
Sbjct: 795  TDGRFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSN-DL 853

Query: 350  HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
             V +AL DMY KC  IE++  VF+    R L    S+++   H+G   + +  F  M   
Sbjct: 854  FVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSS 913

Query: 410  GIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            G+  + V++ + L A       NLG+ R     H   I++GFE +I V+ ++MD YS+CG
Sbjct: 914  GVIPNRVSILSVLLA-----CGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCG 968

Query: 467  HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
             ++L+  +F++    ++VC+++++  Y  +G GR+A+D+ + M++ G+ P  VTF CVL+
Sbjct: 969  SLDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLS 1028

Query: 527  GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
             C+HSG+++EG++ F  M   + I     +Y+CM+D+LGRAG L +A +L++  P   D 
Sbjct: 1029 ACSHSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDA 1088

Query: 587  MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
             +W SLL +CR+H N  +  ++A+ L  L+PV    +  +SN Y+    +    ++R+  
Sbjct: 1089 SIWGSLLGACRIHNNLDLAEKIADHLFHLDPVHAGYHVLLSNIYAAKSRWNEVEKVRKMM 1148

Query: 647  LARKLTRDIGHSLIEVNS 664
              R   +  G SL+E ++
Sbjct: 1149 ARRGANKIQGFSLVEYDN 1166



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 127/498 (25%), Positives = 253/498 (50%), Gaps = 14/498 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H +V   G   + +  + L  LY +      A  +FDE P  N+  WN  LR++C   
Sbjct: 22  QLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWNSTLRSYCREK 81

Query: 191 RPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           + +E LR+++ M    G  P+  +    ++ C+   +L+ GK +H    K   +  ++FV
Sbjct: 82  QWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFV 141

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL--C 307
            +ALV+ YS CG + EA K F+     D + W S+V+ Y   +   +AL LF +M +  C
Sbjct: 142 GSALVELYSKCGQMGEALKVFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDC 201

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
                + + V  ++  ++  NV  G  +HG V +  FD G + + ++L ++Y K    + 
Sbjct: 202 VVLDPV-TLVSVVSACAQLLNVKAGSCVHGLVIRREFD-GDLPLVNSLLNLYAKTGCEKI 259

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  +F   P + +   ++++    ++    +A+ +F  M+++    + VT+ + L+A +V
Sbjct: 260 AANLFSKMPEKDVISWSTMIACYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAV 319

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
             S NL   + +H  A+  GFE + +VS +L+D Y +C   + +  +F+++P  +VV + 
Sbjct: 320 --SRNLEEGKKIHKIAVWKGFELDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWV 377

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           ++++GY++NGM  +++ +   M+  G+ PD V  + +LA  +  G+ ++  L  +     
Sbjct: 378 ALLSGYAQNGMAYKSMGVFRNMLSDGIQPDAVAVVKILAASSELGIFQQA-LCLHGYVVR 436

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN-----E 602
            G +++    + +I++  + G L  A +L +      D ++WSS++ +  +HG      E
Sbjct: 437 SGFNSNVFVGASLIELYSKCGSLGDAVKLFKGMI-VRDVVIWSSMIAAYGIHGRGGEALE 495

Query: 603 IIGRRVANILMELEPVDF 620
           I  + V N  +    V F
Sbjct: 496 IFDQMVKNSTVRPNNVTF 513



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 115/481 (23%), Positives = 236/481 (49%), Gaps = 13/481 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKK 65
           P   TI      C  +  L    ++  + + N ++  +++  +  ++ + K G +  A K
Sbjct: 101 PDNFTIPIALKACAGLRMLELGKVIHGFAKKNDEIGSDMFVGSALVELYSKCGQMGEALK 160

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAG 124
           +F+E    D V +  +++G  +   P++AL L+ +MV    +     T  SV+S C+   
Sbjct: 161 VFEEFQRPDTVLWTSMVTGYQQNNDPEEALALFSQMVMMDCVVLDPVTLVSVVSACAQLL 220

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G  +H  V+   F  +L + + L++LY + G    A +LF ++PE+++ +W+ M+ 
Sbjct: 221 NVKAGSCVHGLVIRREFDGDLPLVNSLLNLYAKTGCEKIAANLFSKMPEKDVISWSTMIA 280

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            +      +E L ++++M  +  EPN ++    ++ C++   L+EGK++H   +  G+ +
Sbjct: 281 CYANNEAANEALNLFHEMIEKRFEPNSVTVVSALQACAVSRNLEEGKKIHKIAVWKGF-E 339

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           ++  V+ AL+D Y  C    EA   F  +P  DV+SW +++S YA   + + ++ +F  M
Sbjct: 340 LDFSVSTALIDMYMKCSCPDEAVDLFQRLPKKDVVSWVALLSGYAQNGMAYKSMGVFRNM 399

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                +P   + V+ L  +S  G       +HGYV + GF+  +V V ++L ++Y KC  
Sbjct: 400 LSDGIQPDAVAVVKILAASSELGIFQQALCLHGYVVRSGFN-SNVFVGASLIELYSKCGS 458

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-DEGIGLDEVTLSTTLK 423
           +  +V +F+    R +   +S++ +    G   +A+E+F  MV +  +  + VT  + L 
Sbjct: 459 LGDAVKLFKGMIVRDVVIWSSMIAAYGIHGRGGEALEIFDQMVKNSTVRPNNVTFLSILS 518

Query: 424 ALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
           A S +     G     R++H   ++   E +  +   ++D   R G +  +  +  ++P 
Sbjct: 519 ACSHAGLVEEGLKIFDRMVHDYQLRPDSE-HFGI---MVDLLGRIGQLGKAMDIINRMPI 574

Query: 481 P 481
           P
Sbjct: 575 P 575



 Score =  136 bits (342), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 177/365 (48%), Gaps = 8/365 (2%)

Query: 131  QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            + H ++ + G   +  I +    +Y+       A  +F+++P      WN+M+R F    
Sbjct: 738  KTHAKIFAYGLQYDSRILTKFAIMYVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDG 797

Query: 191  RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            R    L +Y+KM  +G++P+  +F + ++ C+    L  GK +H H++  G  + ++FV 
Sbjct: 798  RFLSSLELYSKMMEKGLKPDKFAFPFALKSCAGLSDLQRGKVIHQHLVCCGCSN-DLFVD 856

Query: 251  NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
             ALVD Y+ CG +  A+  FD + V D++SW S++S YA      + L  F  M+     
Sbjct: 857  AALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVI 916

Query: 311  PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
            P+  S +  L      G +  G+  H YV + GF+   + V +A+ DMY KC  ++ +  
Sbjct: 917  PNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEF-DILVATAIMDMYSKCGSLDLARC 975

Query: 371  VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
            +F+   G+ L C ++++ S    G+ + A+++F  MV  G+    VT +  L A S S  
Sbjct: 976  LFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGL 1035

Query: 431  ANLGSC--RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFT 487
               G    +L+    + +   SN A    ++D   R G +  +  + E +P  P+   + 
Sbjct: 1036 LEEGKMYFQLMTEEFVIARKLSNYAC---MVDLLGRAGQLSEAVDLIENMPVEPDASIWG 1092

Query: 488  SIMNG 492
            S++  
Sbjct: 1093 SLLGA 1097



 Score =  131 bits (330), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 95/363 (26%), Positives = 177/363 (48%), Gaps = 4/363 (1%)

Query: 54   FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
            +V    +++A  +F+++P      +N++I G         +L LY +M+  G+K     F
Sbjct: 762  YVSFNRIDAASIVFEDIPNPCSFLWNVMIRGFATDGRFLSSLELYSKMMEKGLKPDKFAF 821

Query: 114  SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
               L  C+       G  IH  ++  G   +L++ + LVD+Y + G    A  +FD++  
Sbjct: 822  PFALKSCAGLSDLQRGKVIHQHLVCCGCSNDLFVDAALVDMYAKCGDIEAARLVFDKMAV 881

Query: 174  RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            R+L +W  M+  +       E L  ++ M++ GV PN +S   ++  C     L +G+  
Sbjct: 882  RDLVSWTSMISGYAHNGYNSETLGFFDLMRSSGVIPNRVSILSVLLACGNLGALRKGEWF 941

Query: 234  HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
            HS+VI+ G+ + +I VA A++D YS CGSL  A+  FD     D++ W+++++ Y  +  
Sbjct: 942  HSYVIQTGF-EFDILVATAIMDMYSKCGSLDLARCLFDETAGKDLVCWSAMIASYGIHGH 1000

Query: 294  IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
               A++LF +M     RPS  +F   L+  S +G +  GK     +T+       +   +
Sbjct: 1001 GRKAIDLFDQMVKAGVRPSHVTFTCVLSACSHSGLLEEGKMYFQLMTEEFVIARKLSNYA 1060

Query: 354  ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
             + D+ G+   +  +V + E+ P   +E   S+  SLL +  I + +++   + D    L
Sbjct: 1061 CMVDLLGRAGQLSEAVDLIENMP---VEPDASIWGSLLGACRIHNNLDLAEKIADHLFHL 1117

Query: 414  DEV 416
            D V
Sbjct: 1118 DPV 1120



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 66/255 (25%), Positives = 126/255 (49%), Gaps = 4/255 (1%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            +++     +D + K G + +A+ +FD+M  RD+V++  +ISG     +  + L  +D M 
Sbjct: 852  DLFVDAALVDMYAKCGDIEAARLVFDKMAVRDLVSWTSMISGYAHNGYNSETLGFFDLMR 911

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            S G+  +  +  SVL  C N G   +G   H  V+  GF  ++ + + ++D+Y + G   
Sbjct: 912  SSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGSLD 971

Query: 163  RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
             A  LFDE   ++L  W+ M+ ++       + + ++++M   GV P+ ++F  ++  CS
Sbjct: 972  LARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSACS 1031

Query: 223  IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
               LL+EGK     + +   +   +     +VD     G L EA    + +PV+ D   W
Sbjct: 1032 HSGLLEEGKMYFQLMTEEFVIARKLSNYACMVDLLGRAGQLSEAVDLIENMPVEPDASIW 1091

Query: 282  NSIVS---IYADYDL 293
             S++    I+ + DL
Sbjct: 1092 GSLLGACRIHNNLDL 1106



 Score = 85.9 bits (211), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 57/190 (30%), Positives = 99/190 (52%), Gaps = 7/190 (3%)

Query: 1    MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
            M S+ ++P   +I ++   C ++  L       SY  Q   + +I  +   +D + K G 
Sbjct: 910  MRSSGVIPNRVSILSVLLACGNLGALRKGEWFHSYVIQTGFEFDILVATAIMDMYSKCGS 969

Query: 60   LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
            L+ A+ LFDE   +D+V ++ +I+  G   H ++A+ L+D+MV  G++ S  TF+ VLS 
Sbjct: 970  LDLARCLFDETAGKDLVCWSAMIASYGIHGHGRKAIDLFDQMVKAGVRPSHVTFTCVLSA 1029

Query: 120  CSNAGFYTEG---IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERN 175
            CS++G   EG    Q+      +   L+ Y  + +VDL  R G    A+DL + +P E +
Sbjct: 1030 CSHSGLLEEGKMYFQLMTEEFVIARKLSNY--ACMVDLLGRAGQLSEAVDLIENMPVEPD 1087

Query: 176  LATWNLMLRA 185
             + W  +L A
Sbjct: 1088 ASIWGSLLGA 1097



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 78/169 (46%), Gaps = 6/169 (3%)

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
            A  N  S   LH    K+G   +   +  L   Y++C  ++ + +VF++ P PNV  + 
Sbjct: 12  QACNNGRSVSQLHSQVFKTGILHDTFFATKLNSLYAKCASLQAARKVFDETPHPNVHLWN 71

Query: 488 SIMNGYSRNGMGREALDMLEVMI-QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           S +  Y R     E L +  +MI   G  PD  T    L  C    M++ G+++    K 
Sbjct: 72  STLRSYCREKQWEETLRLFHLMICTAGEAPDNFTIPIALKACAGLRMLELGKVIHGFAKK 131

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQ--QTPGGGDCMMWSSLL 593
              I +D    S ++++  + G + +A ++ +  Q P   D ++W+S++
Sbjct: 132 NDEIGSDMFVGSALVELYSKCGQMGEALKVFEEFQRP---DTVLWTSMV 177


>gi|357449183|ref|XP_003594868.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355483916|gb|AES65119.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 874

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 180/607 (29%), Positives = 309/607 (50%), Gaps = 41/607 (6%)

Query: 38  PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL 97
           PN  +N+Y          K G +++A+++FDE+  RD V++N +I+   +F   + A++L
Sbjct: 123 PNSLVNMYG---------KCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHL 173

Query: 98  YDEMVSHGIKESASTFSSVLSVCSN--AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
           +  M+   +  ++ T  SV   CSN   G    G Q+H  VL  G     +  + LV +Y
Sbjct: 174 FRLMLLENVGPTSFTLVSVAHACSNLINGLLL-GKQVHAFVLRNG-DWRTFTNNALVTMY 231

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            ++G    A  LFD   +++L +WN ++ +  +  R +E L   + M   GV PNG++  
Sbjct: 232 AKLGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLA 291

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  CS   +L  GK++H+ V+    +  N FV  ALVD Y  C    + +  FD +  
Sbjct: 292 SVLPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFR 351

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             +  WN++++ Y   +  ++A+ELF  M       P+  +    L    R  +    + 
Sbjct: 352 RTIAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEG 411

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           IH  V K GF+    +VQ+AL DMY +   IE + ++F S   + +   N+++T  +  G
Sbjct: 412 IHSCVVKWGFEKDK-YVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCG 470

Query: 395 NIKDAVEMFGFM-----------VDE-------GIGLDEVTLSTTLKALSVSASANLGSC 436
              DA+ +   M            D+        +  + VTL T L     +A A LG  
Sbjct: 471 RHDDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPG--CAALAALGKG 528

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           + +H  A+K     ++AV  +L+D Y++CG + LS  VFE++   NV+ +  ++  Y  +
Sbjct: 529 KEIHAYAVKQMLSKDVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMH 588

Query: 497 GMGREALDMLEVMIQRG-----LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551
           G G EAL +   M++ G     + P++VT++ + A  +HSGMV EG  +F +MK+ +GI+
Sbjct: 589 GKGEEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEGLNLFYTMKAKHGIE 648

Query: 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGG-GDCMMWSSLLRSCRVHGNEIIGRRVAN 610
               HY+C++D+LGR+G +++A  L++  P        WSSLL +C++H N  IG   A 
Sbjct: 649 PTSDHYACLVDLLGRSGQIEEAYNLIKTMPSNMKKVDAWSSLLGACKIHQNLEIGEIAAK 708

Query: 611 ILMELEP 617
            L  L+P
Sbjct: 709 NLFVLDP 715



 Score =  194 bits (492), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 151/531 (28%), Positives = 246/531 (46%), Gaps = 32/531 (6%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           QA+  Y  MV+ G+      F +VL   +       G Q+H  V   G  L   + + LV
Sbjct: 68  QAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNLGKQLHAHVFKFGQALPTAVPNSLV 127

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
           ++Y + G    A  +FDE+  R+  +WN M+ A C     +  + ++  M  E V P   
Sbjct: 128 NMYGKCGDIDAARRVFDEITNRDDVSWNSMINAACRFEEWELAVHLFRLMLLENVGPTSF 187

Query: 213 SFCYMVRGCS---IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +   +   CS    G+LL  GKQ+H+ V++ G  D   F  NALV  Y+  G + EAK  
Sbjct: 188 TLVSVAHACSNLINGLLL--GKQVHAFVLRNG--DWRTFTNNALVTMYAKLGRVYEAKTL 243

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           FD     D++SWN+I+S  +  D   +AL     M     RP+  +    L   S    +
Sbjct: 244 FDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASVLPACSHLEML 303

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
             GK+IH +V        +  V  AL DMY  C   E    VF+    R++   N+++  
Sbjct: 304 GCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRTIAVWNAMIAG 363

Query: 390 LLHSGNIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
            + +    +A+E+F  MV E G+  + VTLS+ L A  V   + L     +H C +K GF
Sbjct: 364 YVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPA-CVRCESFLDK-EGIHSCVVKWGF 421

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           E +  V  +LMD YSR G IE++  +F  +   ++V + +++ GY   G   +AL++L  
Sbjct: 422 EKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRHDDALNLLHD 481

Query: 509 MIQRG-------------------LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           M QRG                   L P+ VT + VL GC     + +G+ + ++      
Sbjct: 482 M-QRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEI-HAYAVKQM 539

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +  D    S ++DM  + G L+ +  + +Q     + + W+ L+ +  +HG
Sbjct: 540 LSKDVAVGSALVDMYAKCGCLNLSRTVFEQM-SVRNVITWNVLIMAYGMHG 589



 Score =  167 bits (424), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 236/509 (46%), Gaps = 35/509 (6%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLL----DSYCQPNPQLNIYSSNRTIDDFVK 56
           ML   + P   T+ ++A  C++++   + LLL     ++   N     +++N  +  + K
Sbjct: 177 MLLENVGPTSFTLVSVAHACSNLI---NGLLLGKQVHAFVLRNGDWRTFTNNALVTMYAK 233

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
            G +  AK LFD    +D+V++N +IS   +    ++AL     M+  G++ +  T +SV
Sbjct: 234 LGRVYEAKTLFDVFDDKDLVSWNTIISSLSQNDRFEEALLYLHVMLQSGVRPNGVTLASV 293

Query: 117 LSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           L  CS+      G +IH  VL +     N ++G  LVD+Y       +   +FD +  R 
Sbjct: 294 LPACSHLEMLGCGKEIHAFVLMNNDLIENSFVGCALVDMYCNCKQPEKGRLVFDGMFRRT 353

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +A WN M+  +       E + ++ +M  E G+ PN ++   ++  C       + + +H
Sbjct: 354 IAVWNAMIAGYVRNEFDYEAIELFVEMVFELGLSPNSVTLSSVLPACVRCESFLDKEGIH 413

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           S V+K G+ + + +V NAL+D YS  G +  A+  F  +   D++SWN++++ Y      
Sbjct: 414 SCVVKWGF-EKDKYVQNALMDMYSRMGRIEIARSIFGSMNRKDIVSWNTMITGYVVCGRH 472

Query: 295 FDALELFFRMQLCRKRPSIRSFVEF---LNFASRTGNVYF---------------GKQIH 336
            DAL L   MQ  +    I +F ++    NF  +  +V                 GK+IH
Sbjct: 473 DDALNLLHDMQRGQAEHRINTFDDYEDNKNFPLKPNSVTLMTVLPGCAALAALGKGKEIH 532

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            Y  K       V V SAL DMY KC  +  S  VFE    R++   N L+ +    G  
Sbjct: 533 AYAVKQMLSK-DVAVGSALVDMYAKCGCLNLSRTVFEQMSVRNVITWNVLIMAYGMHGKG 591

Query: 397 KDAVEMFGFMVDEG-----IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
           ++A+++F  MV+EG     I  +EVT      +LS S   + G   L +    K G E  
Sbjct: 592 EEALKLFRRMVEEGDNNREIRPNEVTYIAIFASLSHSGMVDEG-LNLFYTMKAKHGIEPT 650

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
                 L+D   R G IE ++ + + +PS
Sbjct: 651 SDHYACLVDLLGRSGQIEEAYNLIKTMPS 679



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 50/224 (22%), Positives = 98/224 (43%), Gaps = 8/224 (3%)

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
           + P    E  + L +    S     A+  +  MV  G+  D       LKA +     NL
Sbjct: 44  AEPRLPSEWVSHLRSQTQSSSTFHQAISTYTNMVTAGVPPDNFAFPAVLKATAGIQDLNL 103

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G  + LH    K G     AV  SL++ Y +CG I+ + +VF++I + + V + S++N  
Sbjct: 104 G--KQLHAHVFKFGQALPTAVPNSLVNMYGKCGDIDAARRVFDEITNRDDVSWNSMINAA 161

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
            R      A+ +  +M+   + P   T + V   C++   +  G L+   + +    + D
Sbjct: 162 CRFEEWELAVHLFRLMLLENVGPTSFTLVSVAHACSN---LINGLLLGKQVHAFVLRNGD 218

Query: 554 RQHYS--CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
            + ++   ++ M  + G + +A+ L        D + W++++ S
Sbjct: 219 WRTFTNNALVTMYAKLGRVYEAKTLF-DVFDDKDLVSWNTIISS 261


>gi|225463844|ref|XP_002265179.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Vitis vinifera]
          Length = 617

 Score =  269 bits (688), Expect = 3e-69,   Method: Compositional matrix adjust.
 Identities = 149/504 (29%), Positives = 276/504 (54%), Gaps = 10/504 (1%)

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
           AL L  +L   NL  +N ++R     +    E L +Y +M ++G+ P+  +  ++++ C+
Sbjct: 77  ALSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACA 136

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               + EG+++H   IK+G    +++V+N L+  Y+ C  +  A+K FD  P  D++SW 
Sbjct: 137 ESRAVREGEEVHGQAIKMGLAS-DVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWT 195

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y       + + LFF M     +    + V  L+  +R G++  G+++H Y+ + 
Sbjct: 196 TMIQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRN 255

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
              +  V V +AL DMY KC     +  VF+  P +++   NS+++ L   G  K+++ M
Sbjct: 256 SNVNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYM 315

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLM 459
           F  M   G+  D+VTL   L     ++ ANLG   L   +H    ++   ++  +  +L+
Sbjct: 316 FRKMQRLGVKPDDVTLVAVL-----NSCANLGVLELGKWVHAYLDRNQIRADGFIGNALV 370

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG I+ +  VF+ +   +V  +T+++ G + +G G +ALD+   M + G+ PD+V
Sbjct: 371 DMYAKCGSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEV 430

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL  C+H G+V+EG+  F  M ++Y +    +HY CM+D+LGRAG++++AEE ++ 
Sbjct: 431 TFVGVLTACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRN 490

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D  +  +LL +C++HG   +G  V   + ++EP     Y  +SN YS    +  +
Sbjct: 491 MPIEPDAFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDA 550

Query: 640 MQIRETALARKLTRDIGHSLIEVN 663
           +++R+T   R L +  G S IE++
Sbjct: 551 LKLRKTMKERNLEKTPGCSSIELD 574



 Score =  172 bits (437), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 139/546 (25%), Positives = 248/546 (45%), Gaps = 42/546 (7%)

Query: 8   PRVRTITTLAPTCTSIVPLSS--SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNS--A 63
           P   +  +   TC SI  L    + ++ +   P+ QL I  S R      +S  ++   A
Sbjct: 20  PHKLSFLSTLQTCKSIKGLKQIHASIIKTMPSPDAQLTI--STRLSALCAQSLPIDPRYA 77

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPK-QALYLYDEMVSHGIKESASTFSSVLSVCSN 122
             L  ++   ++  YN +I G     +   + L +Y +M+S GI     T   VL  C+ 
Sbjct: 78  LSLLAQLRTPNLPLYNAIIRGLATSNNDSIEGLVVYKQMLSKGIVPDNYTIPFVLKACAE 137

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
           +    EG ++H + + +G   ++Y+ + L+ +Y        A  +FD  P+R+L +W  M
Sbjct: 138 SRAVREGEEVHGQAIKMGLASDVYVSNTLMRMYAVCDVIRSARKVFDTSPQRDLVSWTTM 197

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           ++ + ++    E + ++ +M  E ++ +G++   ++  C+    L  G++LH ++I+   
Sbjct: 198 IQGYVKMGFAREGVGLFFEMCGENLQADGMTLVIVLSSCARLGDLRLGRKLHRYIIRNSN 257

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           V++++FV NALVD Y  CG    A+K F  +PV +V+SWNS++S  A      ++L +F 
Sbjct: 258 VNLDVFVGNALVDMYLKCGDANFARKVFQEMPVKNVVSWNSMISGLAQKGQFKESLYMFR 317

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
           +MQ    +P   + V  LN  +  G +  GK +H Y+ +         + +AL DMY KC
Sbjct: 318 KMQRLGVKPDDVTLVAVLNSCANLGVLELGKWVHAYLDRNQI-RADGFIGNALVDMYAKC 376

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             I+ +  VF++   + +    +++  L   G    A+++F  M   GI  DEVT    L
Sbjct: 377 GSIDQACWVFQAMNRKDVYSYTAMIVGLAMHGQGGKALDLFSEMPKMGIEPDEVTFVGVL 436

Query: 423 KALS--------------VSASANLGSCRLLHCCAI----KSGF-------------ESN 451
            A S              +S   NL      + C +    ++G              E +
Sbjct: 437 TACSHVGLVEEGRKYFEDMSTIYNLRPQLEHYGCMVDLLGRAGLINEAEEFIRNMPIEPD 496

Query: 452 IAVSCSLMDAYSRCGHIELSHQV---FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             V  +L+ A    G +EL   V    EKI       +  + N YS     R+AL + + 
Sbjct: 497 AFVLGALLGACKIHGKVELGESVMKKIEKIEPRKDGAYVLMSNIYSSANRWRDALKLRKT 556

Query: 509 MIQRGL 514
           M +R L
Sbjct: 557 MKERNL 562


>gi|296088715|emb|CBI38165.3| unnamed protein product [Vitis vinifera]
          Length = 654

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 181/610 (29%), Positives = 303/610 (49%), Gaps = 53/610 (8%)

Query: 101 MVSHGIKE-----SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
           M  HG+       ++S F+ +L  C  +        +H R+L   F + ++I + L+D+Y
Sbjct: 1   MAKHGLVRDLYLPNSSPFAKLLDSCLRSRSARGTRLVHARILMTQFSMEIFIQNRLIDVY 60

Query: 156 MRMGPSVRALDLFDELPERNLATWNLML-------------RAFCELSRPD--------- 193
            +      A  LFD +P+RN  TWN ++             R F  +  PD         
Sbjct: 61  GKCDCLDDARKLFDRMPQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVS 120

Query: 194 ---------EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
                    E L  + KM  E    N  SF   +  C+  M L+ G Q+H+ V K  +  
Sbjct: 121 GFAQHDRFEESLEYFVKMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRY-S 179

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++++ +AL+D YS CGS+  A++ F  +   ++++WNS+++ Y       +ALE+F RM
Sbjct: 180 TDVYMGSALIDMYSKCGSVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRM 239

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                 P   +    ++  +    +  G QIH  V K       + + +AL DMY KC+ 
Sbjct: 240 MDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSK 299

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +  VF+    R++    S+++    + ++K A  MF  M         V     L A
Sbjct: 300 VNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRN-----VVSWNALIA 354

Query: 425 LSVSASANLGSCRLLHCCAIKSGF----------ESNIAVSCSLMDAYSRCGHIELSHQV 474
                  N  + RL      +S +          +S+I V  SL+D Y +CG IE   +V
Sbjct: 355 GYTQNGENEEALRLFRLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRV 414

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           FEK+   + V + +I+ GY++NG G EAL +   M+  G  PD VT + VL  C+H+G+V
Sbjct: 415 FEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGLV 474

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           +EG+  F SM+  +G+   + HY+CM+D+LGRAG L++A+ L++  P   D ++W SLL 
Sbjct: 475 EEGRHYFFSMEE-HGLIPLKDHYTCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLLA 533

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +C+VHGN  +G+  A  L+E++P +   Y  +SN Y+E+G +   +++R+    + +T+ 
Sbjct: 534 ACKVHGNIEMGKHAAEKLLEIDPWNSGPYVLLSNMYAELGRWGDVVRVRKLMRQQGVTKQ 593

Query: 655 IGHSLIEVNS 664
            G S IEV S
Sbjct: 594 PGCSWIEVES 603



 Score =  167 bits (422), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 141/554 (25%), Positives = 252/554 (45%), Gaps = 57/554 (10%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ N ++ N  I    KSG L+ A +LF  MP  D  ++N ++SG  +    +++L  + 
Sbjct: 77  PQRNTFTWNSLISVLTKSGFLDEAARLFGSMPEPDQCSWNSMVSGFAQHDRFEESLEYFV 136

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M       +  +F S LS C+       G Q+H  V    +  ++Y+GS L+D+Y + G
Sbjct: 137 KMHREDFLLNEYSFGSALSACAGLMDLNMGTQVHALVSKSRYSTDVYMGSALIDMYSKCG 196

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A ++F  + ERNL TWN ++  + +     E L ++ +M   G+EP+ ++   +V 
Sbjct: 197 SVACAEEVFSGMIERNLVTWNSLITCYEQNGPASEALEVFVRMMDSGLEPDEVTLASVVS 256

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L EG Q+H+ V+K      ++ + NALVD Y+ C  + EA++ FD + + +V+
Sbjct: 257 ACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCSKVNEARRVFDRMSIRNVV 316

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN-------VYFG 332
           S  S+VS YA    +  A  +F +M     + ++ S+   +   ++ G            
Sbjct: 317 SETSMVSGYARAASVKAARFMFSKMT----QRNVVSWNALIAGYTQNGENEEALRLFRLL 372

Query: 333 KQIHGYVTKLGFDH---GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
           K+   + T   F +     + V ++L DMY KC  IE    VFE    R     N+++  
Sbjct: 373 KRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSRVFEKMKERDCVSWNAIIVG 432

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
              +G   +A+++F  M+  G   D VT+   L             C   H   ++ G  
Sbjct: 433 YAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVL-------------CACSHAGLVEEG-- 477

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
                            H   S +    IP  +   +T +++   R G   EA +++E M
Sbjct: 478 ----------------RHYFFSMEEHGLIPLKD--HYTCMVDLLGRAGCLNEAKNLIEAM 519

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDM---LG 565
               + PD V +  +LA C   G ++ G+   ++ + +  ID  +   Y  + +M   LG
Sbjct: 520 ---PVNPDAVVWGSLLAACKVHGNIEMGK---HAAEKLLEIDPWNSGPYVLLSNMYAELG 573

Query: 566 RAGILDKAEELLQQ 579
           R G + +  +L++Q
Sbjct: 574 RWGDVVRVRKLMRQ 587



 Score = 91.3 bits (225), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 64/301 (21%), Positives = 146/301 (48%), Gaps = 21/301 (6%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSG 58
           M+ + L P   T+ ++   C S+  L   L + +      +   ++   N  +D + K  
Sbjct: 239 MMDSGLEPDEVTLASVVSACASLCALKEGLQIHARVVKTNKFRDDLVLGNALVDMYAKCS 298

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            +N A+++FD M  R++V+   ++SG  +    K A +++ +M    +     +++++++
Sbjct: 299 KVNEARRVFDRMSIRNVVSETSMVSGYARAASVKAARFMFSKMTQRNV----VSWNALIA 354

Query: 119 VCSNAGFYTEGIQIHCRVLS--------LGFG----LNLYIGSPLVDLYMRMGPSVRALD 166
             +  G   E +++  R+L           FG     ++++G+ L+D+YM+ G       
Sbjct: 355 GYTQNGENEEALRLF-RLLKRESIWPTHYTFGNLLKSDIFVGNSLIDMYMKCGSIEDGSR 413

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F+++ ER+  +WN ++  + +     E L+++ KM   G +P+ ++   ++  CS   L
Sbjct: 414 VFEKMKERDCVSWNAIIVGYAQNGYGAEALQIFRKMLVCGEKPDHVTMIGVLCACSHAGL 473

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
           ++EG+     + + G + +       +VD     G L EAK   + +PV+ D + W S++
Sbjct: 474 VEEGRHYFFSMEEHGLIPLKDHY-TCMVDLLGRAGCLNEAKNLIEAMPVNPDAVVWGSLL 532

Query: 286 S 286
           +
Sbjct: 533 A 533


>gi|449481491|ref|XP_004156199.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g13880-like [Cucumis sativus]
          Length = 839

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 175/629 (27%), Positives = 321/629 (51%), Gaps = 17/629 (2%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++  N  ++ + K G   SA KLFD+M   ++VTYN LISG  +  +  + + L+D+   
Sbjct: 94  LFLQNNLLNMYCKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARR 153

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G+K    T +  L+ CS +G  + G  IH  +L  G G  + + + L+D+Y + G    
Sbjct: 154 LGLKLDKYTCAGALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDY 213

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  LFD   + +  +WN ++  + +  + +E+L +  KM   G+  N  +    ++ CS 
Sbjct: 214 ARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSS 273

Query: 224 GMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                +  G  LH H IKLG + +++ V  AL+D Y+  GSL +A + FD +   +V+ +
Sbjct: 274 NFNGCKMFGTMLHDHAIKLG-LHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMY 332

Query: 282 NSIVSIYADYDLIFD-----ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           N++++     + I D     AL LFF M+ C  +PS+ ++   L       +  F KQ+H
Sbjct: 333 NAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVH 392

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             + K G      ++ S L D+Y     +  ++  F S    ++    +++   L +G  
Sbjct: 393 ALMCKNGL-LSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEF 451

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIA 453
           + A+ +F  ++      DE   ST +     S+ AN+G  R    +   A K G      
Sbjct: 452 ESALSLFYELLTYEEKPDEFIXSTIM-----SSCANMGMLRSGEQIQGHATKVGISRFTI 506

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
              S +  Y++ G +  ++  F+++ +P++V +++++   +++G   EAL   E+M   G
Sbjct: 507 FQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCG 566

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           + P+   FL VL  C+H G+V+EG   F++M+  Y +    +H  C++D+LGRAG L  A
Sbjct: 567 IEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADA 626

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
           E L+ +     + +MW +LL +CR+H + +  +RVA  ++ELEP+  A Y  + N Y + 
Sbjct: 627 ESLILRLGFEHEPVMWRALLSACRIHKDTVTAQRVAQKVIELEPLASASYVLLYNIYMDA 686

Query: 634 GEFEVSMQIRETALARKLTRDIGHSLIEV 662
           G    + ++R     R++ ++ G S I++
Sbjct: 687 GNKLAASKVRTLMEERRIKKEPGLSWIQI 715



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 126/519 (24%), Positives = 244/519 (47%), Gaps = 17/519 (3%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +  ++   +  G    G  +H  ++   F   L++ + L+++Y + G +  A  LFD++ 
Sbjct: 62  YVKLVQSATKTGKLNHGKLVHSHMIKTSFRPCLFLQNNLLNMYCKCGDTRSADKLFDKMS 121

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           + N+ T+N ++  + ++S  D+V+ +++K +  G++ +  +    +  CS    L  GK 
Sbjct: 122 KSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYTCAGALTACSQSGNLSAGKM 181

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY---A 289
           +H  ++  G +   + + N+L+D YS CG +  A+  FD     D +SWNS+++ Y    
Sbjct: 182 IHGLILVYG-LGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNG 240

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
            Y+ +   L+   +  L     ++ S ++  + ++  G   FG  +H +  KLG  H  V
Sbjct: 241 KYEELLTILQKMHQNGLAFNTYTLGSALKACS-SNFNGCKMFGTMLHDHAIKLGL-HLDV 298

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD-----AVEMFG 404
            V +AL DMY K   ++ ++ +F+    +++   N++M  LL    I+D     A+ +F 
Sbjct: 299 VVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFF 358

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M   GI     T S+ LKA  +         + +H    K+G  S+  +   L+D YS 
Sbjct: 359 EMKSCGIKPSMFTYSSLLKACIIVEDFKFA--KQVHALMCKNGLLSDEYIGSILIDLYSV 416

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G +  +   F  I +  +V  T+++ GY +NG    AL +   ++     PD+     +
Sbjct: 417 LGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELLTYEEKPDEFIXSTI 476

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           ++ C + GM++ G+ +      V GI       +  I M  ++G L  A    QQ     
Sbjct: 477 MSSCANMGMLRSGEQIQGHATKV-GISRFTIFQNSQIWMYAKSGDLYAANLTFQQME-NP 534

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILME--LEPVDFA 621
           D + WS+++ S   HG+ +   R   ++    +EP  FA
Sbjct: 535 DIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFA 573



 Score =  110 bits (276), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 84/328 (25%), Positives = 152/328 (46%), Gaps = 11/328 (3%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           ++L D   +    L++      +D + K+G L+ A ++FD+M  +++V YN +++G  + 
Sbjct: 283 TMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQ 342

Query: 89  RHPK-----QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL 143
              +     +AL L+ EM S GIK S  T+SS+L  C     +    Q+H  +   G   
Sbjct: 343 ETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLS 402

Query: 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           + YIGS L+DLY  +G  + AL  F+ +    +     M+  + +    +  L ++ ++ 
Sbjct: 403 DEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIXGYLQNGEFESALSLFYELL 462

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
               +P+      ++  C+   +L  G+Q+  H  K+G     IF  N+ +  Y+  G L
Sbjct: 463 TYEEKPDEFIXSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIF-QNSQIWMYAKSGDL 521

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
             A  +F  +   D++SW++++   A +    +AL  F  M+ C   P+  +F+  L   
Sbjct: 522 YAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIAC 581

Query: 324 SRTGNV-----YFGKQIHGYVTKLGFDH 346
           S  G V     YF      Y  KL   H
Sbjct: 582 SHRGLVEEGLRYFDTMEKDYKMKLHVKH 609


>gi|414869547|tpg|DAA48104.1| TPA: hypothetical protein ZEAMMB73_530850 [Zea mays]
          Length = 1091

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 161/612 (26%), Positives = 308/612 (50%), Gaps = 6/612 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMV-TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST 112
           +VK G + SA+++FD M ++  V  +NL++ G  K    +++L L+ +M   GI      
Sbjct: 360 YVKCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHA 419

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            S +L   +      +G+  H  ++ LGFG    + + L+  Y +      A+ +F+ +P
Sbjct: 420 ISCLLKCITCLSCARDGLVAHGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMP 479

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            ++  +WN ++          E + ++ +M  +G E + ++   ++  C+       G+ 
Sbjct: 480 RQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRV 539

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H + +K G +     +ANAL+D YS C       + F  +   +V+SW ++++ Y    
Sbjct: 540 VHGYSVKTGLIG-ETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAG 598

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L      L   M L   RP + +    L+  +   ++  GK +HGY  + G +   + V 
Sbjct: 599 LFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQGKSVHGYTIRNGMEK-LLPVA 657

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL +MY KC  +E +  +F+    + +   N+L+     +    ++  +F  M+ +   
Sbjct: 658 NALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FR 716

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            + VT++  L A +  +S   G  R +H  A++ GF  +   S +L+D Y +CG + ++ 
Sbjct: 717 PNAVTMTCILPAAASISSLERG--REIHAYALRRGFLEDSYASNALVDMYVKCGALLVAR 774

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            +F+++   N++ +T ++ GY  +G G+ A+ + E M   G+ PD  +F  +L  C HSG
Sbjct: 775 VLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSG 834

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  EG+  F +M+  Y I+   +HY+C++D+L R G L +A E ++  P   D  +W SL
Sbjct: 835 LAAEGRRFFKAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWVSL 894

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L  CR+H N  +  +VA+ + +LEP +   Y  ++N Y+E   +E   +++     R L 
Sbjct: 895 LHGCRIHKNVKLAEKVADKVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLR 954

Query: 653 RDIGHSLIEVNS 664
            + G+S IEV S
Sbjct: 955 ENTGYSWIEVRS 966



 Score =  201 bits (511), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 158/646 (24%), Positives = 302/646 (46%), Gaps = 53/646 (8%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  + + G +  A ++FD M  RD +++N +I GC        A+ L+ +M S G 
Sbjct: 242 ANALIAVYSRCGRMEDAARVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGT 301

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG--FGL--------NLYIGSPLVDLYM 156
           + S+ T  SVL  C+  G+   G  +H   +  G  +GL        +  +GS LV +Y+
Sbjct: 302 EISSVTVLSVLPACAGLGYGLIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYV 361

Query: 157 RMGPSVRALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           + G    A  +FD +  + N+  WNL++  + ++   +E L ++ +M   G+ P+  +  
Sbjct: 362 KCGDMASARRVFDAMSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAIS 421

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            +++  +      +G   H +++KLG+      V NAL+ FY+    + +A   F+ +P 
Sbjct: 422 CLLKCITCLSCARDGLVAHGYIVKLGF-GAQCAVCNALISFYAKSNMIGDAVLVFNRMPR 480

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D ISWNS++S  +   L  +A+ELF RM    +     + +  L   +++   + G+ +
Sbjct: 481 QDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVV 540

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HGY  K G   G   + +AL DMY  C+  +S+  +F S   +++    +++TS + +G 
Sbjct: 541 HGYSVKTGLI-GETSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGL 599

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
                 +   MV +GI  D   +++ L A +   S   G  + +H   I++G E  + V+
Sbjct: 600 FDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESLKQG--KSVHGYTIRNGMEKLLPVA 657

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +LM+ Y +C ++E +  +F+++ + +V+ + +++ GYSRN    E+  +   M+ +   
Sbjct: 658 NALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGGYSRNNFPNESFSLFSDMLLQ-FR 716

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQ------LVFNSMKSVYGIDA----------------- 552
           P+ VT  C+L        ++ G+      L    ++  Y  +A                 
Sbjct: 717 PNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVARVL 776

Query: 553 -DRQ------HYSCMIDMLGRAGILDKAEELLQQTPGGG---DCMMWSSLLRSCRVHGNE 602
            DR        ++ MI   G  G    A  L +Q  G G   D   +S++L +C   G  
Sbjct: 777 FDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHSGLA 836

Query: 603 IIGRRVANILM---ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
             GRR    +    ++EP     Y+ + +  S  G+ + +++  E+
Sbjct: 837 AEGRRFFKAMQKEYKIEP-KLKHYTCIVDLLSRTGDLKEALEFIES 881



 Score =  176 bits (446), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 139/509 (27%), Positives = 239/509 (46%), Gaps = 23/509 (4%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
            R +  ++K G L  A+ +FD MP  A D+  +  L+S   K    ++A+ L+ +M   G
Sbjct: 140 KRLVLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCG 199

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +   A   S VL   S+ G  TEG  IH  +  LG G    + + L+ +Y R G    A 
Sbjct: 200 VSPDAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLGLGQACAVANALIAVYSRCGRMEDAA 259

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS--- 222
            +FD +  R+  +WN M+            + +++KM ++G E + ++   ++  C+   
Sbjct: 260 RVFDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLG 319

Query: 223 IGMLLDEGKQLHSHVIKLG--W--------VDVNIFVANALVDFYSACGSLIEAKKSFDF 272
            G++   GK +H + +K G  W        +D +  + + LV  Y  CG +  A++ FD 
Sbjct: 320 YGLI---GKAVHGYSVKSGLLWGLDSVQSGID-DAALGSKLVFMYVKCGDMASARRVFDA 375

Query: 273 IPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
           +    +V  WN I+  YA      ++L LF +M      P   +    L   +       
Sbjct: 376 MSSKGNVHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARD 435

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G   HGY+ KLGF      V +AL   Y K N+I  +V VF   P +     NS+++   
Sbjct: 436 GLVAHGYIVKLGFG-AQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCS 494

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            +G   +A+E+F  M  +G  LD VTL + L A + S     G  R++H  ++K+G    
Sbjct: 495 SNGLNSEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAG--RVVHGYSVKTGLIGE 552

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
            +++ +L+D YS C   + ++Q+F  +   NVV +T+++  Y R G+  +   +L+ M+ 
Sbjct: 553 TSLANALLDMYSNCSDWQSTNQIFRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVL 612

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            G+ PD       L        +K+G+ V
Sbjct: 613 DGIRPDVFAVTSALHAFAGDESLKQGKSV 641



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 111/446 (24%), Positives = 210/446 (47%), Gaps = 5/446 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + KS  +  A  +F+ MP +D +++N +ISGC       +A+ L+  M + G +
Sbjct: 456 NALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLNSEAIELFIRMWTQGQE 515

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             + T  SVL  C+ + ++  G  +H   +  G      + + L+D+Y           +
Sbjct: 516 LDSVTLLSVLPACAQSRYWFAGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWQSTNQI 575

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F  + ++N+ +W  M+ ++      D+V  +  +M  +G+ P+  +    +   +    L
Sbjct: 576 FRSMGQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIRPDVFAVTSALHAFAGDESL 635

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +GK +H + I+ G ++  + VANAL++ Y  C ++ EA+  FD +   DVISWN+++  
Sbjct: 636 KQGKSVHGYTIRNG-MEKLLPVANALMEMYVKCRNVEEARLIFDRVTNKDVISWNTLIGG 694

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+  +   ++  LF  M L + RP+  +    L  A+   ++  G++IH Y  + GF   
Sbjct: 695 YSRNNFPNESFSLFSDM-LLQFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLED 753

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           S +  +AL DMY KC  +  +  +F+    ++L     ++      G  K A+ +F  M 
Sbjct: 754 S-YASNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMR 812

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             GI  D  + S  L A   S  A  G  R       +   E  +     ++D  SR G 
Sbjct: 813 GSGIEPDAASFSAILYACCHSGLAAEGR-RFFKAMQKEYKIEPKLKHYTCIVDLLSRTGD 871

Query: 468 IELSHQVFEKIP-SPNVVCFTSIMNG 492
           ++ + +  E +P  P+   + S+++G
Sbjct: 872 LKEALEFIESMPIEPDSSIWVSLLHG 897



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 150/613 (24%), Positives = 271/613 (44%), Gaps = 54/613 (8%)

Query: 34  SYCQPNPQLNIYSS--NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP 91
           S+   NP     SS  N  I    ++G L  A +L       D+ +Y +++  CG+ R  
Sbjct: 54  SWSTKNPPSRALSSDVNLRIQRLCQAGDLAGALRLLGSDGGVDVRSYCMVVQLCGEERSL 113

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           + A        +H +  ++S  ++                          G    +G  L
Sbjct: 114 EAA------KRAHALIRASSAAAT-------------------------GGKGSVLGKRL 142

Query: 152 VDLYMRMGPSVRALDLFDELPER--NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
           V  Y++ G    A  +FD +P +  ++  W  ++ A+ +     E + ++ +M+  GV P
Sbjct: 143 VLAYLKCGDLGEARTVFDGMPPQAADVRVWTSLMSAYAKAGDFQEAVSLFRQMQCCGVSP 202

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +  +   +++  S    L EG+ +H  + KLG +     VANAL+  YS CG + +A + 
Sbjct: 203 DAHAVSCVLKCVSSLGSLTEGEVIHGLLEKLG-LGQACAVANALIAVYSRCGRMEDAARV 261

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           FD +   D ISWNS++           A++LF +M       S  + +  L   +  G  
Sbjct: 262 FDSMHPRDAISWNSMIGGCFSNGWHGTAVDLFSKMWSQGTEISSVTVLSVLPACAGLGYG 321

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTD---------MYGKCNVIESSVAVFESAPGR-S 379
             GK +HGY  K G   G   VQS + D         MY KC  + S+  VF++   + +
Sbjct: 322 LIGKAVHGYSVKSGLLWGLDSVQSGIDDAALGSKLVFMYVKCGDMASARRVFDAMSSKGN 381

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   N +M      G  ++++ +F  M + GI  DE  +S  LK ++  + A  G   + 
Sbjct: 382 VHVWNLIMGGYAKVGEFEESLSLFVQMHELGIAPDEHAISCLLKCITCLSCARDG--LVA 439

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H   +K GF +  AV  +L+  Y++   I  +  VF ++P  + + + S+++G S NG+ 
Sbjct: 440 HGYIVKLGFGAQCAVCNALISFYAKSNMIGDAVLVFNRMPRQDTISWNSVISGCSSNGLN 499

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYS 558
            EA+++   M  +G   D VT L VL  C  S     G++V   S+K+  G+  +    +
Sbjct: 500 SEAIELFIRMWTQGQELDSVTLLSVLPACAQSRYWFAGRVVHGYSVKT--GLIGETSLAN 557

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG--NEIIGRRVANILMELE 616
            ++DM           ++ +   G  + + W++++ S    G  +++ G     +L  + 
Sbjct: 558 ALLDMYSNCSDWQSTNQIFRSM-GQKNVVSWTAMITSYMRAGLFDKVAGLLQEMVLDGIR 616

Query: 617 PVDFAVYSQVSNF 629
           P  FAV S +  F
Sbjct: 617 PDVFAVTSALHAF 629



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 50/183 (27%), Positives = 94/183 (51%), Gaps = 5/183 (2%)

Query: 5   KLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSA 63
           +  P   T+T + P   SI  L     + +Y      L + Y+SN  +D +VK G L  A
Sbjct: 714 QFRPNAVTMTCILPAAASISSLERGREIHAYALRRGFLEDSYASNALVDMYVKCGALLVA 773

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA 123
           + LFD +  ++++++ ++I+G G     K A+ L+++M   GI+  A++FS++L  C ++
Sbjct: 774 RVLFDRLTKKNLISWTIMIAGYGMHGFGKHAIALFEQMRGSGIEPDAASFSAILYACCHS 833

Query: 124 GFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWN 180
           G   EG +   + +   + +   L   + +VDL  R G    AL+  + +P E + + W 
Sbjct: 834 GLAAEGRRFF-KAMQKEYKIEPKLKHYTCIVDLLSRTGDLKEALEFIESMPIEPDSSIWV 892

Query: 181 LML 183
            +L
Sbjct: 893 SLL 895


>gi|302799994|ref|XP_002981755.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
 gi|300150587|gb|EFJ17237.1| hypothetical protein SELMODRAFT_115083 [Selaginella moellendorffii]
          Length = 673

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 161/561 (28%), Positives = 298/561 (53%), Gaps = 16/561 (2%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           + S++  C+N      G  IH  +L  G+G   ++ + LV++Y +      A  +F+ + 
Sbjct: 13  YESLIRRCANPHSLEAGRSIHAHILRHGYGGERFLLNSLVEMYCKCDSLRDATAVFELVA 72

Query: 173 ERNLA-TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
              +A  WN+++ A  +  +  E + +Y +M  EGV+PN ++   ++  C+    L  G+
Sbjct: 73  RERIAFPWNILIAANAQRGQSRESIALYRRMSCEGVKPNAITLVSVLGACANLEDLKTGR 132

Query: 232 QLH-SHVIKLGW--------VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           ++H SHV  LG         + V+  +A ALV  Y  CGS+ +A+  F+ I   D+ +WN
Sbjct: 133 EIHRSHV--LGGRSRPYERPMPVDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWN 190

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++V+ Y+    +  A+ +  RM +   RP   +FV  L++    G +   + IH ++   
Sbjct: 191 AMVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHILAT 250

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G +     V + L  MYG+C  +  +V  F+    + +   N+++ +   SG+ +D++ +
Sbjct: 251 GLESRPT-VGTTLVSMYGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRI 309

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           +  M  EG+ +D+VTL   L A   S+ A     RL+H   + +G E ++ +  +L++AY
Sbjct: 310 YHVMDLEGVRVDKVTLIGVLDA--CSSLALTSKTRLVHARIVDTGVELDVVLGTALVNAY 367

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           +R GH+  +  VF ++   NV  +++++  Y++ G    +L+M   M  +GL P+ +T++
Sbjct: 368 ARGGHLVDADLVFAEMEERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQGLRPNYITYV 427

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L  CNH+G++  G   F SM   YGI++  +H SC++D+LGR+G LD+AE L+   P 
Sbjct: 428 SILFACNHAGLLDHGLDYFASMGRDYGIESCEEHCSCIVDLLGRSGRLDEAEALMASVPY 487

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                 W  LL +CR HG+   G RVA    ++E  + A Y  +SN Y+  G ++   ++
Sbjct: 488 RLGISAWMCLLGACRTHGDVERGARVARRAFQVESGEVAPYVALSNMYAGHGMWDEVSRV 547

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R+  +A  L +  G S +E++
Sbjct: 548 RQL-MANTLDKSTGKSFVEID 567



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 83/347 (23%), Positives = 169/347 (48%), Gaps = 8/347 (2%)

Query: 35  YCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           Y +P P ++   +   +  + + G +  A+ +F+ +  RD+  +N +++   +     QA
Sbjct: 147 YERPMP-VDAVMATALVTMYGRCGSVADARAVFEGICGRDLAAWNAMVAAYSRNGQMAQA 205

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
           + +   M   G++    TF  +LS C   G   E   IH  +L+ G      +G+ LV +
Sbjct: 206 VLVLRRMAVEGVRPGEGTFVGMLSWCCTVGALDEARSIHAHILATGLESRPTVGTTLVSM 265

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y R G    A+  F  + ++++  WN M+ A+ +     + +R+Y+ M  EGV  + ++ 
Sbjct: 266 YGRCGSLGGAVCAFQRIRDKDIVAWNAMIAAYAQSGHSRDSIRIYHVMDLEGVRVDKVTL 325

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++  CS   L  + + +H+ ++  G V++++ +  ALV+ Y+  G L++A   F  + 
Sbjct: 326 IGVLDACSSLALTSKTRLVHARIVDTG-VELDVVLGTALVNAYARGGHLVDADLVFAEME 384

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             +V +W+++V+ YA       +LE++  MQL   RP+  ++V  L   +  G +  G  
Sbjct: 385 ERNVATWSAMVAAYAQTGHPDRSLEMYREMQLQGLRPNYITYVSILFACNHAGLLDHGLD 444

Query: 335 IHGYVTKLGFDHGSVHVQ---SALTDMYGKCNVIESSVAVFESAPGR 378
              Y   +G D+G    +   S + D+ G+   ++ + A+  S P R
Sbjct: 445 ---YFASMGRDYGIESCEEHCSCIVDLLGRSGRLDEAEALMASVPYR 488



 Score =  130 bits (328), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/387 (24%), Positives = 180/387 (46%), Gaps = 13/387 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVT--YNLLISGCGKFRHPKQALYLYDEMVSHG 105
           N  ++ + K   L  A  +F E+ AR+ +   +N+LI+   +    ++++ LY  M   G
Sbjct: 49  NSLVEMYCKCDSLRDATAVF-ELVARERIAFPWNILIAANAQRGQSRESIALYRRMSCEG 107

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIH--------CRVLSLGFGLNLYIGSPLVDLYMR 157
           +K +A T  SVL  C+N      G +IH         R       ++  + + LV +Y R
Sbjct: 108 VKPNAITLVSVLGACANLEDLKTGREIHRSHVLGGRSRPYERPMPVDAVMATALVTMYGR 167

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +F+ +  R+LA WN M+ A+    +  + + +  +M  EGV P   +F  M
Sbjct: 168 CGSVADARAVFEGICGRDLAAWNAMVAAYSRNGQMAQAVLVLRRMAVEGVRPGEGTFVGM 227

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C     LDE + +H+H++  G ++    V   LV  Y  CGSL  A  +F  I   D
Sbjct: 228 LSWCCTVGALDEARSIHAHILATG-LESRPTVGTTLVSMYGRCGSLGGAVCAFQRIRDKD 286

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           +++WN++++ YA      D++ ++  M L   R    + +  L+  S        + +H 
Sbjct: 287 IVAWNAMIAAYAQSGHSRDSIRIYHVMDLEGVRVDKVTLIGVLDACSSLALTSKTRLVHA 346

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +   G +   V + +AL + Y +   +  +  VF     R++   ++++ +   +G+  
Sbjct: 347 RIVDTGVELDVV-LGTALVNAYARGGHLVDADLVFAEMEERNVATWSAMVAAYAQTGHPD 405

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKA 424
            ++EM+  M  +G+  + +T  + L A
Sbjct: 406 RSLEMYREMQLQGLRPNYITYVSILFA 432


>gi|302782728|ref|XP_002973137.1| hypothetical protein SELMODRAFT_10568 [Selaginella moellendorffii]
 gi|300158890|gb|EFJ25511.1| hypothetical protein SELMODRAFT_10568 [Selaginella moellendorffii]
          Length = 624

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 163/587 (27%), Positives = 309/587 (52%), Gaps = 13/587 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           ++K G L  A+++ D +   D+VT+  L++   +    ++A+  Y EM+  G+  +  T 
Sbjct: 42  YLKCGSLADAREVIDRVRIGDVVTWTRLLAAYARNGDCERAIQAYQEMLQAGVTPNKITI 101

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            ++L+ C          QI   V  +GF  +  + + LV ++ R G    A D F E+  
Sbjct: 102 VTLLNACVEHSCLPNTAQIRSNVFEMGFLSDAVVATVLVSMHSRFGRMEDACDAFREIQR 161

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ +WN ML  + E    +E + ++ +M+ EG  P+ +SF  +    +      E + +
Sbjct: 162 HDVVSWNAMLWVYAENDFREEAMLLFREMQLEGSLPSKVSFLAVFNAVAAAEDSLEARAM 221

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H   ++ G ++ ++ + NA+VD Y  CG L  A   F  +P  D+ISW ++++ +     
Sbjct: 222 HGLFLRSG-IEQDLALGNAIVDMYGKCGCLDGALDVFRSMPERDIISWTAMIAAFVQCGA 280

Query: 294 IFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYF---GKQIHGYVTKLGFDHGS 348
           +  AL+ F  MQL   RP+  +F+    +      G++     G++IH  + +   D   
Sbjct: 281 MLGALDSFRLMQLQGIRPNKVTFLTASLIIVVDSLGSLRALQEGRRIHERIMEEELDRDY 340

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           V + +AL +MY +C  + S+   F   P R     N ++ +   S +++  V M G M  
Sbjct: 341 VILGNALINMYLRCGDVASAWECFRRMPARDESSWNVMLAAC--SDDLRLVVTMVGEMQQ 398

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           +G+   ++TL   + +  V+A++ L   R +H   +++G E   +++ +L+D YS+CG++
Sbjct: 399 QGLSPGKITLLALINS-CVTAASTLPEARRVHARVVEAGLEREKSIANALVDMYSKCGNL 457

Query: 469 ELSHQVF---EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           E +  VF         + V + +++ G++++G   EAL +   M Q+G+ P +V+ + VL
Sbjct: 458 EAASSVFFSSRLFELDDAVAWNALVLGHTQHGSWNEALGLFWAMQQQGVSPTEVSLVGVL 517

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG-G 584
           A  +H+GM++EG  VF SM+  YGI A  +H  C++D+L + G L++AEE ++   G   
Sbjct: 518 ASLSHAGMIQEGCRVFGSMEVDYGIGAAAEHRGCVVDLLSKVGWLEEAEEFMRSGCGSRE 577

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           DC+ W +LL +C +HG+   G R A  L+EL+ ++ A +  +SN ++
Sbjct: 578 DCVGWLTLLGACNLHGDVERGLRAAFRLLELDSINSAAHVILSNLFA 624



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 121/501 (24%), Positives = 242/501 (48%), Gaps = 14/501 (2%)

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           SS+L  C N+    +G ++H      G      +   LV +Y++ G    A ++ D +  
Sbjct: 1   SSLLWACINSRALAQGKRVHQLAQQKGGETEKALSIQLVQMYLKCGSLADAREVIDRVRI 60

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ TW  +L A+      +  ++ Y +M   GV PN ++   ++  C     L    Q+
Sbjct: 61  GDVVTWTRLLAAYARNGDCERAIQAYQEMLQAGVTPNKITIVTLLNACVEHSCLPNTAQI 120

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
            S+V ++G++  +  VA  LV  +S  G + +A  +F  I   DV+SWN+++ +YA+ D 
Sbjct: 121 RSNVFEMGFLS-DAVVATVLVSMHSRFGRMEDACDAFREIQRHDVVSWNAMLWVYAENDF 179

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +A+ LF  MQL    PS  SF+   N  +   +    + +HG   + G +   + + +
Sbjct: 180 REEAMLLFREMQLEGSLPSKVSFLAVFNAVAAAEDSLEARAMHGLFLRSGIEQ-DLALGN 238

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           A+ DMYGKC  ++ ++ VF S P R +    +++ + +  G +  A++ F  M  +GI  
Sbjct: 239 AIVDMYGKCGCLDGALDVFRSMPERDIISWTAMIAAFVQCGAMLGALDSFRLMQLQGIRP 298

Query: 414 DEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESN-IAVSCSLMDAYSRCGHIE 469
           ++VT  T    + V +  +L +    R +H   ++   + + + +  +L++ Y RCG + 
Sbjct: 299 NKVTFLTASLIIVVDSLGSLRALQEGRRIHERIMEEELDRDYVILGNALINMYLRCGDVA 358

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC- 528
            + + F ++P+ +   +  ++   S +   R  + M+  M Q+GL P K+T L ++  C 
Sbjct: 359 SAWECFRRMPARDESSWNVMLAACSDD--LRLVVTMVGEMQQQGLSPGKITLLALINSCV 416

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL--QQTPGGGDC 586
             +  + E + V   +    G++ ++   + ++DM  + G L+ A  +    +     D 
Sbjct: 417 TAASTLPEARRVHARVVEA-GLEREKSIANALVDMYSKCGNLEAASSVFFSSRLFELDDA 475

Query: 587 MMWSSLLRSCRVHG--NEIIG 605
           + W++L+     HG  NE +G
Sbjct: 476 VAWNALVLGHTQHGSWNEALG 496


>gi|297836444|ref|XP_002886104.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297331944|gb|EFH62363.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 723

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 183/624 (29%), Positives = 336/624 (53%), Gaps = 27/624 (4%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N   D ++K G L S  + FD M +RD V++N+++ G       ++ L+ + ++   G +
Sbjct: 73  NSIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSKLRVWGFE 132

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            + ST   V+  C +  F  +G +IH  V+  GF     + + ++ LY     S+ A  L
Sbjct: 133 PNVSTLVLVIHACRSLWF--DGEKIHGYVIRSGFWRISSVQNSILCLYSEF-DSLSARKL 189

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGML 226
           FDE+ ER++ +W++++R++ +   P   L ++ +M  E   EP+ ++   +++ C++   
Sbjct: 190 FDEMSERDVISWSVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKACAVLDD 249

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +D G+ +H   I+ G+  V++FV N+L+D YS       A + FD     +++SWNSI++
Sbjct: 250 IDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETTCRNIVSWNSILA 309

Query: 287 IYADYDLIFD-ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
            +  Y+  +D ALE+F  M+         + V  L       +    K IHG + + G++
Sbjct: 310 GFV-YNQRYDEALEMFRLMKKEALEADEVTLVSLLQVCKFFEHPLPCKSIHGVIIRRGYE 368

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
              V + S+L D Y  C++++ +  VF+S   + +  C+++++ L   G   +A+ +F  
Sbjct: 369 SNEVAL-SSLMDAYTSCSLVDDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEAISIFCQ 427

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN-IAVSCSLMDAYSR 464
           M D+    + +T+ + L A SVSA   L + +  H  AI+ G   N I+V  S++DAY++
Sbjct: 428 MRDKP---NAITVISLLSACSVSAV--LRTSKWAHGIAIRRGLAINDISVDTSIVDAYAK 482

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I+++ + F++I   ++V +T I++ Y+ NG+  +AL   + M +    P+ VT+L  
Sbjct: 483 CGAIDIARRTFDQITEKSIVSWTVIISAYAINGLPDKALASFDEMKRDSYTPNAVTYLAA 542

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADR----QHYSCMIDMLGRAGILDKAEELLQQT 580
           L+ CNH G+VK+G ++F SM     ++ D+    QHYSC++DML RAG +D A EL++  
Sbjct: 543 LSACNHGGLVKKGLMIFRSM-----VEEDQKPSLQHYSCIVDMLSRAGEIDTAMELIKNL 597

Query: 581 PGG--GDCMMWSSLLRSCRVH-GNEIIGRRVANILMELEPVDFAVYSQVSN-FYSEIGEF 636
           P         W ++L  CR    + II   V   ++ELEP+  + Y   S+ F +E    
Sbjct: 598 PEDVKAGASAWGAILSGCRNRLKSGIITSEVVAEVLELEPLCSSGYLLASSVFAAEKSWV 657

Query: 637 EVSMQIRETALARKLTRDIGHSLI 660
           +V+M +R     R +    G+S++
Sbjct: 658 DVAM-MRRLVKERNVRVVAGYSMV 680



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 130/518 (25%), Positives = 248/518 (47%), Gaps = 28/518 (5%)

Query: 86  GKFRHPKQALYLYDEMVSHGIK-ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
           GK+R   + +  Y E+ S GI+      F  V   C+   +  +G + +  V        
Sbjct: 23  GKWR---EVVSGYSEIQSAGIQFNDPFVFPIVFKACAKLSWLLQGFESYVSV-------- 71

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
              G+ + D YM+ G     L  FD +  R+  +WN+++    +    +E L  ++K++ 
Sbjct: 72  ---GNSIADFYMKCGDLCSGLRAFDCMNSRDSVSWNVIVFGLLDHGFEEEGLWWFSKLRV 128

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
            G EPN  +   ++  C    L  +G+++H +VI+ G+  ++  V N+++  YS   SL 
Sbjct: 129 WGFEPNVSTLVLVIHACR--SLWFDGEKIHGYVIRSGFWRIS-SVQNSILCLYSEFDSL- 184

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFA 323
            A+K FD +   DVISW+ ++  Y         LELF  M +  +  P   +    L   
Sbjct: 185 SARKLFDEMSERDVISWSVVIRSYVQSQEPVLGLELFKEMVREAKTEPDCVTVTSVLKAC 244

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +   ++  G+ +HG+  + GFD   V V+++L DMY K    +S+  VF+    R++   
Sbjct: 245 AVLDDIDVGRSVHGFSIRRGFDLVDVFVRNSLIDMYSKGYDADSAFRVFDETTCRNIVSW 304

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           NS++   +++    +A+EMF  M  E +  DEVTL + L+            C+ +H   
Sbjct: 305 NSILAGFVYNQRYDEALEMFRLMKKEALEADEVTLVSLLQVCKFFEHPL--PCKSIHGVI 362

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           I+ G+ESN     SLMDAY+ C  ++ +  VF+ +   +VV  +++++G  R G   EA+
Sbjct: 363 IRRGYESNEVALSSLMDAYTSCSLVDDARTVFDSMSYKDVVSCSTMISGLGRCGRSDEAI 422

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMID 562
            +   M  +   P+ +T + +L+ C+ S +++  +     +++    I+ D    + ++D
Sbjct: 423 SIFCQMRDK---PNAITVISLLSACSVSAVLRTSKWAHGIAIRRGLAIN-DISVDTSIVD 478

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
              + G +D A     Q       + W+ ++ +  ++G
Sbjct: 479 AYAKCGAIDIARRTFDQITEKS-IVSWTVIISAYAING 515


>gi|15234095|ref|NP_195043.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75206840|sp|Q9SMZ2.1|PP347_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At4g33170
 gi|4455331|emb|CAB36791.1| putative protein [Arabidopsis thaliana]
 gi|7270265|emb|CAB80034.1| putative protein [Arabidopsis thaliana]
 gi|332660786|gb|AEE86186.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 990

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 177/591 (29%), Positives = 303/591 (51%), Gaps = 16/591 (2%)

Query: 84  GCGKFRHPKQ---ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140
           G  ++ H  Q    L  + +MV   ++    TF  +L+          G Q+HC  L LG
Sbjct: 286 GLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLALGQQVHCMALKLG 345

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
             L L + + L+++Y ++     A  +FD + ER+L +WN ++    +     E + ++ 
Sbjct: 346 LDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIAQNGLEVEAVCLFM 405

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEG----KQLHSHVIKLGWVDVNIFVANALVDF 256
           ++   G++P+  +   +++  S    L EG    KQ+H H IK+  V  + FV+ AL+D 
Sbjct: 406 QLLRCGLKPDQYTMTSVLKAASS---LPEGLSLSKQVHVHAIKINNVS-DSFVSTALIDA 461

Query: 257 YSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF 316
           YS    + EA+  F+    D +++WN++++ Y         L+LF  M    +R    + 
Sbjct: 462 YSRNRCMKEAEILFERHNFD-LVAWNAMMAGYTQSHDGHKTLKLFALMHKQGERSDDFTL 520

Query: 317 VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
                       +  GKQ+H Y  K G+D   + V S + DMY KC  + ++   F+S P
Sbjct: 521 ATVFKTCGFLFAINQGKQVHAYAIKSGYDL-DLWVSSGILDMYVKCGDMSAAQFAFDSIP 579

Query: 377 GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436
                   ++++  + +G  + A  +F  M   G+  DE T++T  KA S   +   G  
Sbjct: 580 VPDDVAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTIATLAKASSCLTALEQG-- 637

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           R +H  A+K    ++  V  SL+D Y++CG I+ ++ +F++I   N+  + +++ G +++
Sbjct: 638 RQIHANALKLNCTNDPFVGTSLVDMYAKCGSIDDAYCLFKRIEMMNITAWNAMLVGLAQH 697

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
           G G+E L + + M   G+ PDKVTF+ VL+ C+HSG+V E      SM   YGI  + +H
Sbjct: 698 GEGKETLQLFKQMKSLGIKPDKVTFIGVLSACSHSGLVSEAYKHMRSMHGDYGIKPEIEH 757

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           YSC+ D LGRAG++ +AE L++         M+ +LL +CRV G+   G+RVA  L+ELE
Sbjct: 758 YSCLADALGRAGLVKQAENLIESMSMEASASMYRTLLAACRVQGDTETGKRVATKLLELE 817

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           P+D + Y  +SN Y+   +++     R      K+ +D G S IEV N  H
Sbjct: 818 PLDSSAYVLLSNMYAAASKWDEMKLARTMMKGHKVKKDPGFSWIEVKNKIH 868



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 155/636 (24%), Positives = 289/636 (45%), Gaps = 52/636 (8%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGK-----FRHP 91
           + NP+   +  N  I  + K G L  A+++FD+MP RD+V++N +++   +       + 
Sbjct: 69  EENPER--FLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSECVVENI 126

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           +QA  L+  +    +  S  T S +L +C ++G+       H     +G   + ++   L
Sbjct: 127 QQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIGLDGDEFVAGAL 186

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
           V++Y++ G       LF+E+P R++  WNLML+A+ E+   +E + + +   + G+ PN 
Sbjct: 187 VNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSSGLNPNE 246

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   + R        D+                            S  G +       D
Sbjct: 247 ITLRLLARISG-----DD----------------------------SDAGQVKSFANGND 273

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
              V ++I  N  +S Y         L+ F  M          +F+  L  A +  ++  
Sbjct: 274 ASSVSEIIFRNKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLATAVKVDSLAL 333

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+Q+H    KLG D   + V ++L +MY K      +  VF++   R L   NS++  + 
Sbjct: 334 GQQVHCMALKLGLDL-MLTVSNSLINMYCKLRKFGFARTVFDNMSERDLISWNSVIAGIA 392

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            +G   +AV +F  ++  G+  D+ T+++ LKA S S    L   + +H  AIK    S+
Sbjct: 393 QNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAAS-SLPEGLSLSKQVHVHAIKINNVSD 451

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
             VS +L+DAYSR   ++ +  +FE+  + ++V + ++M GY+++  G + L +  +M +
Sbjct: 452 SFVSTALIDAYSRNRCMKEAEILFER-HNFDLVAWNAMMAGYTQSHDGHKTLKLFALMHK 510

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGIL 570
           +G   D  T   V   C     + +G+ V   ++KS  G D D    S ++DM  + G +
Sbjct: 511 QGERSDDFTLATVFKTCGFLFAINQGKQVHAYAIKS--GYDLDLWVSSGILDMYVKCGDM 568

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI--LMELEPVDFAVYSQVSN 628
             A+      P   D + W++++  C  +G E     V +   LM + P +F + + ++ 
Sbjct: 569 SAAQFAFDSIPVPDD-VAWTTMISGCIENGEEERAFHVFSQMRLMGVLPDEFTI-ATLAK 626

Query: 629 FYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
             S +   E   QI   AL    T D  +G SL+++
Sbjct: 627 ASSCLTALEQGRQIHANALKLNCTNDPFVGTSLVDM 662



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/473 (23%), Positives = 208/473 (43%), Gaps = 57/473 (12%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF-----C 187
           H R+L+       ++ + L+ +Y + G    A  +FD++P+R+L +WN +L A+     C
Sbjct: 62  HARILTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPDRDLVSWNSILAAYAQSSEC 121

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
            +    +   ++  ++ + V  + ++   M++ C     +   +  H +  K+G +D + 
Sbjct: 122 VVENIQQAFLLFRILRQDVVYTSRMTLSPMLKLCLHSGYVWASESFHGYACKIG-LDGDE 180

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL---FFRM 304
           FVA ALV+ Y   G + E K  F+ +P  DV+ WN ++  Y +     +A++L   F   
Sbjct: 181 FVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKAYLEMGFKEEAIDLSSAFHSS 240

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
            L     ++R         S  G      Q+  +    G D  SV               
Sbjct: 241 GLNPNEITLRLLARISGDDSDAG------QVKSFAN--GNDASSV--------------- 277

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
              S  +F           N  ++  LHSG     ++ F  MV+  +  D+VT    L  
Sbjct: 278 ---SEIIFR----------NKGLSEYLHSGQYSALLKCFADMVESDVECDQVTFILMLAT 324

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
                S  LG  + +HC A+K G +  + VS SL++ Y +      +  VF+ +   +++
Sbjct: 325 AVKVDSLALG--QQVHCMALKLGLDLMLTVSNSLINMYCKLRKFGFARTVFDNMSERDLI 382

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + S++ G ++NG+  EA+ +   +++ GL PD+ T   VL   +    + EG L  +  
Sbjct: 383 SWNSVIAGIAQNGLEVEAVCLFMQLLRCGLKPDQYTMTSVLKAASS---LPEG-LSLSKQ 438

Query: 545 KSVYGID----ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             V+ I     +D    + +ID   R   + +AE L ++     D + W++++
Sbjct: 439 VHVHAIKINNVSDSFVSTALIDAYSRNRCMKEAEILFERH--NFDLVAWNAMM 489



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 53/209 (25%), Positives = 95/209 (45%), Gaps = 10/209 (4%)

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH-VQSALTDMYGKCNVIESSVAVFESAPG 377
           FL  A  + ++  GK  H  +  L F+      + + L  MY KC  +  +  VF+  P 
Sbjct: 45  FLRNAITSSDLMLGKCTHARI--LTFEENPERFLINNLISMYSKCGSLTYARRVFDKMPD 102

Query: 378 RSLECCNSLMTSLLHSG-----NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           R L   NS++ +   S      NI+ A  +F  +  + +    +TLS  LK      S  
Sbjct: 103 RDLVSWNSILAAYAQSSECVVENIQQAFLLFRILRQDVVYTSRMTLSPMLKL--CLHSGY 160

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
           + +    H  A K G + +  V+ +L++ Y + G ++    +FE++P  +VV +  ++  
Sbjct: 161 VWASESFHGYACKIGLDGDEFVAGALVNIYLKFGKVKEGKVLFEEMPYRDVVLWNLMLKA 220

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y   G   EA+D+       GL P+++T 
Sbjct: 221 YLEMGFKEEAIDLSSAFHSSGLNPNEITL 249


>gi|297834340|ref|XP_002885052.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330892|gb|EFH61311.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 652

 Score =  269 bits (687), Expect = 4e-69,   Method: Compositional matrix adjust.
 Identities = 190/582 (32%), Positives = 305/582 (52%), Gaps = 31/582 (5%)

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
            HPK+    Y+    H +  S +T    L  C+       G QIH  ++  GF       
Sbjct: 49  EHPKR----YEH---HNVATSIAT----LQRCAQRKDSVSGQQIHGFMVRKGF----LDD 93

Query: 149 SP-----LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           SP     LV++Y + G   RA+ +F    ER++  +N ++  F     P + + MY +M+
Sbjct: 94  SPRAVTSLVNMYAKCGLMRRAVLVFGG-SERDVFGYNALISGFVVNGSPLDAMDMYREMR 152

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
           A+G+ P+  +F  +++G S  M + + K++H+   KLG+V  + +V +ALV  YS   S+
Sbjct: 153 AKGILPDKYTFPSLLKG-SDAMEVSDVKKVHALAFKLGFVS-DCYVGSALVTSYSKFMSV 210

Query: 264 IEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
            +A+K FD +P  DD + WN++V+ Y+      DAL +F +M+      S  +    L+ 
Sbjct: 211 EDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMREEGVAMSRHTITSVLSS 270

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
            + +G++  G+ IHG   K+GFD G V V +AL D+YGK   +E + ++FE+   R L  
Sbjct: 271 FTVSGDLDNGRSIHGLAVKMGFDSGIV-VSNALIDLYGKSKWLEEANSIFEAMDERDLFT 329

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            NS++    + G+    + +F  M+  GI  D VTL+T L      AS   G  R +H  
Sbjct: 330 WNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGRLASLKQG--REIHGY 387

Query: 443 AIKSGF----ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
            I SG      SN  +  SLMD Y +CG +  +  VF+ +   +   +  ++NGY     
Sbjct: 388 MIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSC 447

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
           G  ALDM   M + G+ PD++TF+ +L  C+HSG V EG+     M+++Y I     HY+
Sbjct: 448 GELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQMETLYNILPTSDHYA 507

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           C+IDMLGRA  L++A +L    P   + ++W S+L SCR+HGN+ +       L ELEP 
Sbjct: 508 CVIDMLGRADKLEEAYDLAISMPICDNPVVWRSILSSCRLHGNKDLAVVAGKRLYELEPE 567

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
              VY  +SN Y E  ++E  + +R+T   + + +  G S I
Sbjct: 568 HCGVYVLMSNVYVEAKKYEEVLDVRDTMKEQNVKKTPGCSWI 609



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/427 (28%), Positives = 207/427 (48%), Gaps = 14/427 (3%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           RD+  YN LISG      P  A+ +Y EM + GI     TF S+L   S+A   ++  ++
Sbjct: 123 RDVFGYNALISGFVVNGSPLDAMDMYREMRAKGILPDKYTFPSLLK-GSDAMEVSDVKKV 181

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT-WNLMLRAFCELSR 191
           H     LGF  + Y+GS LV  Y +      A  +FDELP+R+ +  WN ++  +  + R
Sbjct: 182 HALAFKLGFVSDCYVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFR 241

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
            ++ L +++KM+ EGV  +  +   ++   ++   LD G+ +H   +K+G+ D  I V+N
Sbjct: 242 FEDALIVFSKMREEGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGF-DSGIVVSN 300

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-R 310
           AL+D Y     L EA   F+ +   D+ +WNS++ ++ DY    D     F   LC   R
Sbjct: 301 ALIDLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVH-DYCGDHDGTLALFETMLCSGIR 359

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-----DHGSVHVQSALTDMYGKCNVI 365
           P I +    L    R  ++  G++IHGY+   G       +G +H  ++L DMY KC  +
Sbjct: 360 PDIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIH--NSLMDMYVKCGDL 417

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  VF+S   +     N ++         + A++MF  M   G+  DE+T    L+A 
Sbjct: 418 RDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQAC 477

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVV 484
           S S   N G   L     + +   ++   +C ++D   R   +E ++ +   +P   N V
Sbjct: 478 SHSGFVNEGRNFLAQMETLYNILPTSDHYAC-VIDMLGRADKLEEAYDLAISMPICDNPV 536

Query: 485 CFTSIMN 491
            + SI++
Sbjct: 537 VWRSILS 543



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/336 (27%), Positives = 161/336 (47%), Gaps = 4/336 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARD-MVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           Y  +  +  + K   +  A+K+FDE+P RD  V +N L++G       + AL ++ +M  
Sbjct: 195 YVGSALVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSHIFRFEDALIVFSKMRE 254

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G+  S  T +SVLS  + +G    G  IH   + +GF   + + + L+DLY +      
Sbjct: 255 EGVAMSRHTITSVLSSFTVSGDLDNGRSIHGLAVKMGFDSGIVVSNALIDLYGKSKWLEE 314

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F+ + ER+L TWN +L         D  L ++  M   G+ P+ ++   ++  C  
Sbjct: 315 ANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFETMLCSGIRPDIVTLTTVLPTCGR 374

Query: 224 GMLLDEGKQLHSHVIKLGWVD---VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
              L +G+++H ++I  G ++    N F+ N+L+D Y  CG L +A+  FD + V D  S
Sbjct: 375 LASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSAS 434

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN +++ Y        AL++F  M     +P   +FV  L   S +G V  G+     + 
Sbjct: 435 WNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFVNEGRNFLAQME 494

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            L     +    + + DM G+ + +E +  +  S P
Sbjct: 495 TLYNILPTSDHYACVIDMLGRADKLEEAYDLAISMP 530



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 133/277 (48%), Gaps = 22/277 (7%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI---SGCGKFRHPKQALYLYDE 100
           I  SN  ID + KS  L  A  +F+ M  RD+ T+N ++     CG        L L++ 
Sbjct: 296 IVVSNALIDLYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDH---DGTLALFET 352

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF----GLNLYIGSPLVDLYM 156
           M+  GI+    T ++VL  C       +G +IH  +++ G       N +I + L+D+Y+
Sbjct: 353 MLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYV 412

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A  +FD +  ++ A+WN+M+  +   S  +  L M++ M   GV+P+ ++F  
Sbjct: 413 KCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVG 472

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN----ALVDFYSACGSLIEAKKSFDF 272
           +++ CS    ++EG+   + +  L     NI   +     ++D       L EA      
Sbjct: 473 LLQACSHSGFVNEGRNFLAQMETL----YNILPTSDHYACVIDMLGRADKLEEAYDLAIS 528

Query: 273 IPV-DDVISWNSIVS---IYADYDLIFDALELFFRMQ 305
           +P+ D+ + W SI+S   ++ + DL   A +  + ++
Sbjct: 529 MPICDNPVVWRSILSSCRLHGNKDLAVVAGKRLYELE 565



 Score = 75.1 bits (183), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 104/249 (41%), Gaps = 41/249 (16%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTI-----DDFV 55
           ML + + P + T+TT+ PTC  +  L     +  Y   +  LN  SSN  I     D +V
Sbjct: 353 MLCSGIRPDIVTLTTVLPTCGRLASLKQGREIHGYMIASGLLNRKSSNGFIHNSLMDMYV 412

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K G L  A+ +FD M  +D  ++N++I+G G     + AL ++  M   G+K    TF  
Sbjct: 413 KCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVG 472

Query: 116 VLSVCSNAGFYTEG-----------------------IQIHCRVLSLGFGLNLYIGSPLV 152
           +L  CS++GF  EG                       I +  R   L    +L I  P+ 
Sbjct: 473 LLQACSHSGFVNEGRNFLAQMETLYNILPTSDHYACVIDMLGRADKLEEAYDLAISMPIC 532

Query: 153 D-------------LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY 199
           D             L+     +V A     EL   +   + LM   + E  + +EVL + 
Sbjct: 533 DNPVVWRSILSSCRLHGNKDLAVVAGKRLYELEPEHCGVYVLMSNVYVEAKKYEEVLDVR 592

Query: 200 NKMKAEGVE 208
           + MK + V+
Sbjct: 593 DTMKEQNVK 601


>gi|359487704|ref|XP_002276220.2| PREDICTED: pentatricopeptide repeat-containing protein
           At2g22070-like [Vitis vinifera]
          Length = 585

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 151/466 (32%), Positives = 259/466 (55%), Gaps = 9/466 (1%)

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M+  G  PN  +F  ++   +  M++  G+QLHS + K G+ D NIFV  ALVD Y+ C 
Sbjct: 1   MRCSGPYPNQFTFSSILSASAATMMVLHGQQLHSLIHKHGF-DANIFVGTALVDMYAKCA 59

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR---PSIRSFVE 318
            +  A + FD +P  +++SWNS++  +   +L   A+ +F    + R++   P+  S   
Sbjct: 60  DMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVF--KDVLREKTVIPNEVSVSS 117

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L+  +  G + FG+Q+HG V K G      +V ++L DMY KC   +  V +F+    R
Sbjct: 118 VLSACANMGGLNFGRQVHGVVVKFGLV-PLTYVMNSLMDMYFKCRFFDEGVKLFQCVGDR 176

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
            +   N L+   + +   ++A   F  M  EGI  DE + ST L + +  A+ + G+   
Sbjct: 177 DVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTA-- 234

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +H   IK G+  N+ +  SL+  Y++CG +  ++QVFE I   NV+ +T++++ Y  +G 
Sbjct: 235 IHDQIIKLGYVKNMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGC 294

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
             + +++ E M+  G+ P  VTF+CVL+ C+H+G V+EG   FNSMK ++ ++   +HY+
Sbjct: 295 ANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKKIHDMNPGPEHYA 354

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           CM+D+LGRAG LD+A+  ++  P      +W +LL +CR +GN  +GR  A  L E+EP 
Sbjct: 355 CMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEMEPY 414

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +   Y  ++N  +  G  E + ++R       + ++ G S I+V +
Sbjct: 415 NPGNYVLLANMCTRSGRLEEANEVRRLMGVNGVRKEPGCSWIDVKN 460



 Score =  155 bits (391), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 120/455 (26%), Positives = 212/455 (46%), Gaps = 20/455 (4%)

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TFSS+LS  +       G Q+H  +   GF  N+++G+ LVD+Y +      A+ +FD++
Sbjct: 12  TFSSILSASAATMMVLHGQQLHSLIHKHGFDANIFVGTALVDMYAKCADMHSAVRVFDQM 71

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           PERNL +WN M+  F   +  D  + ++   ++ + V PN +S   ++  C+    L+ G
Sbjct: 72  PERNLVSWNSMIVGFFHNNLYDRAVGVFKDVLREKTVIPNEVSVSSVLSACANMGGLNFG 131

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H  V+K G V +  +V N+L+D Y  C    E  K F  +   DV++WN +V  +  
Sbjct: 132 RQVHGVVVKFGLVPLT-YVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQ 190

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            D   +A   F+ M+     P   SF   L+ ++    ++ G  IH  + KLG+   ++ 
Sbjct: 191 NDKFEEACNYFWVMRREGILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVK-NMC 249

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           +  +L  MY KC  +  +  VFE     ++    +++++    G     +E+F  M+ EG
Sbjct: 250 ILGSLITMYAKCGSLVDAYQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEG 309

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS--CSLMDAYSRCGHI 468
           I    VT    L A S +     G   L H  ++K   + N        ++D   R G +
Sbjct: 310 IEPSHVTFVCVLSACSHTGRVEEG---LAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWL 366

Query: 469 ELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDMLEVMIQRGLIPDKVTFLCV 524
           + + +  E +P  P    + +++    + G   MGREA + L  M      P     L  
Sbjct: 367 DEAKRFIESMPMKPTPSVWGALLGACRKYGNLKMGREAAERLFEM--EPYNPGNYVLLAN 424

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
           +  C  SG ++E     N ++ + G++  R+   C
Sbjct: 425 M--CTRSGRLEEA----NEVRRLMGVNGVRKEPGC 453



 Score =  143 bits (361), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 182/358 (50%), Gaps = 5/358 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY-DEM 101
           NI+     +D + K   ++SA ++FD+MP R++V++N +I G        +A+ ++ D +
Sbjct: 44  NIFVGTALVDMYAKCADMHSAVRVFDQMPERNLVSWNSMIVGFFHNNLYDRAVGVFKDVL 103

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +  +  + SSVLS C+N G    G Q+H  V+  G     Y+ + L+D+Y +    
Sbjct: 104 REKTVIPNEVSVSSVLSACANMGGLNFGRQVHGVVVKFGLVPLTYVMNSLMDMYFKCRFF 163

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              + LF  + +R++ TWN+++  F +  + +E    +  M+ EG+ P+  SF  ++   
Sbjct: 164 DEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRREGILPDEASFSTVLHSS 223

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L +G  +H  +IKLG+V  N+ +  +L+  Y+ CGSL++A + F+ I   +VISW
Sbjct: 224 ASLAALHQGTAIHDQIIKLGYVK-NMCILGSLITMYAKCGSLVDAYQVFEGIEDHNVISW 282

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +++S Y  +      +ELF  M      PS  +FV  L+  S TG V  G      + K
Sbjct: 283 TAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHTGRVEEGLAHFNSMKK 342

Query: 342 L-GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLHSGNIK 397
           +   + G  H  + + D+ G+   ++ +    ES P + +     +L+ +    GN+K
Sbjct: 343 IHDMNPGPEHY-ACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGALLGACRKYGNLK 399



 Score = 97.4 bits (241), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 71/289 (24%), Positives = 141/289 (48%), Gaps = 8/289 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y  N  +D + K    +   KLF  +  RD+VT+N+L+ G  +    ++A   +  M   
Sbjct: 148 YVMNSLMDMYFKCRFFDEGVKLFQCVGDRDVVTWNVLVMGFVQNDKFEEACNYFWVMRRE 207

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           GI    ++FS+VL   ++     +G  IH +++ LG+  N+ I   L+ +Y + G  V A
Sbjct: 208 GILPDEASFSTVLHSSASLAALHQGTAIHDQIIKLGYVKNMCILGSLITMYAKCGSLVDA 267

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F+ + + N+ +W  M+ A+      ++V+ ++  M +EG+EP+ ++F  ++  CS  
Sbjct: 268 YQVFEGIEDHNVISWTAMISAYQLHGCANQVIELFEHMLSEGIEPSHVTFVCVLSACSHT 327

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNS 283
             ++EG    + + K+  ++        +VD     G L EAK+  + +P+    S W +
Sbjct: 328 GRVEEGLAHFNSMKKIHDMNPGPEHYACMVDLLGRAGWLDEAKRFIESMPMKPTPSVWGA 387

Query: 284 IVSI---YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           ++     Y +  +  +A E  F M+     P   ++V   N  +R+G +
Sbjct: 388 LLGACRKYGNLKMGREAAERLFEME--PYNPG--NYVLLANMCTRSGRL 432


>gi|293337115|ref|NP_001168043.1| uncharacterized protein LOC100381772 precursor [Zea mays]
 gi|223945665|gb|ACN26916.1| unknown [Zea mays]
 gi|224028321|gb|ACN33236.1| unknown [Zea mays]
          Length = 780

 Score =  269 bits (687), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 177/627 (28%), Positives = 335/627 (53%), Gaps = 19/627 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           + + +++     ++ +VK G + +A   F  MP R++V++   I+G  +   P  A+ L 
Sbjct: 168 DSEYDVFVGTSIVNMYVKCGQMGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLL 227

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EM+  G+  +  T +S+L  CS      E  Q+H  ++     L+  +   L+  Y   
Sbjct: 228 TEMLRSGVAINKYTATSILLACSQTSMIREANQVHGMIIKSELYLDHVVKEALISTYANA 287

Query: 159 GPSVRALDLFDELPE-RNLATWNLMLRAFCELS--RPDEVLRMYNKMKAEGVEPNGLSFC 215
           G       +F E+    N + W+  +      S  R  ++LR   +M  + + PN   + 
Sbjct: 288 GAVQLCEKVFQEVDTVSNRSIWSAFISGVSRHSVQRSIQLLR---RMLFQCLRPNDKCYA 344

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            +        L   G+QLH  VIK G++ V + VA+AL   YS C  L ++ K F+ +  
Sbjct: 345 SVFSSVDSSEL---GRQLHPLVIKDGFIHV-VLVASALSTMYSRCNDLKDSYKVFEEMQE 400

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +SW S+++ +A +    +A ++   M      P+  S    L+  +    +  GK++
Sbjct: 401 QDEVSWTSMIAGFATHGHSVEAFQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKGKEV 460

Query: 336 HGYVTKLGFDHG-SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           HG+V +    +G +  +   L  MY KC  ++++  +F++ P +     +S+++    +G
Sbjct: 461 HGHVLRA---YGRTTSINHCLVSMYSKCKDLQTARKLFDATPCKDQIMLSSMISGYATNG 517

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             ++A+ +F  M+  G  +D    S+ +   +  A    G  +LLH  A K G  S+++V
Sbjct: 518 YSEEALSLFQLMLAAGFHIDRFLCSSIISICANMARPFCG--KLLHGYASKVGILSDLSV 575

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           S SL+  YS+ G+++ S +VF+++  P++V +T+I++GY+++G  ++AL + ++MI+ G+
Sbjct: 576 SSSLVKLYSKSGNLDDSRKVFDELDVPDLVTWTAIIDGYAQHGSSQDALALFDLMIRCGV 635

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD V  + VL+ C  +G+V+EG   FNSM++VYG++    HY CM+D+LGR+G L +A+
Sbjct: 636 KPDTVILVSVLSACGRNGLVEEGFKHFNSMRTVYGVEPVLHHYCCMVDLLGRSGRLVEAK 695

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
             ++  P   + M+WS+LL +CRVH + ++GR V N + E E  D   ++ +SN  +  G
Sbjct: 696 SFIESMPVKPNSMVWSTLLAACRVHDDVVLGRFVENKIHE-ENCDSGCFATMSNIRANSG 754

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIE 661
           ++E  M+IR++   + + ++ G S +E
Sbjct: 755 DWEGVMEIRKS--VKDVEKEPGWSFLE 779



 Score =  161 bits (408), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 136/566 (24%), Positives = 272/566 (48%), Gaps = 22/566 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEM 101
           + Y  +  +D   K G L  A + F++   R  +V +N  ISG  +       + ++ +M
Sbjct: 69  DAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAVRNGEHALGVEMFLDM 128

Query: 102 VSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           V     E  S T+S VLS C+       G  +H  VL      ++++G+ +V++Y++ G 
Sbjct: 129 VRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRDSEYDVFVGTSIVNMYVKCGQ 188

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A++ F  +P RN+ +W   +  F +   P   + +  +M   GV  N  +   ++  
Sbjct: 189 MGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLLTEMLRSGVAINKYTATSILLA 248

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVI 279
           CS   ++ E  Q+H  +IK   + ++  V  AL+  Y+  G++   +K F  +  V +  
Sbjct: 249 CSQTSMIREANQVHGMIIK-SELYLDHVVKEALISTYANAGAVQLCEKVFQEVDTVSNRS 307

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
            W++ +S  + +  +  +++L  RM     RP+ + +       S   +   G+Q+H  V
Sbjct: 308 IWSAFISGVSRHS-VQRSIQLLRRMLFQCLRPNDKCYASVF---SSVDSSELGRQLHPLV 363

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF H  V V SAL+ MY +CN ++ S  VFE    +      S++      G+  +A
Sbjct: 364 IKDGFIH-VVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTSMIAGFATHGHSVEA 422

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
            ++   M+ EG   ++V+LS  L A ++      G  + +H   +++ +    +++  L+
Sbjct: 423 FQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKG--KEVHGHVLRA-YGRTTSINHCLV 479

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             YS+C  ++ + ++F+  P  + +  +S+++GY+ NG   EAL + ++M+  G   D+ 
Sbjct: 480 SMYSKCKDLQTARKLFDATPCKDQIMLSSMISGYATNGYSEEALSLFQLMLAAGFHIDR- 538

Query: 520 TFLC--VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            FLC  +++ C +      G+L+      V GI +D    S ++ +  ++G LD + ++ 
Sbjct: 539 -FLCSSIISICANMARPFCGKLLHGYASKV-GILSDLSVSSSLVKLYSKSGNLDDSRKVF 596

Query: 578 QQ--TPGGGDCMMWSSLLRSCRVHGN 601
            +   P   D + W++++     HG+
Sbjct: 597 DELDVP---DLVTWTAIIDGYAQHGS 619



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/476 (24%), Positives = 219/476 (46%), Gaps = 20/476 (4%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRAFCEL 189
           Q++C     G   + YI S +VDL  + G    AL  F++   R ++  WN  +      
Sbjct: 56  QLYCAAWKDGLSRDAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAVRN 115

Query: 190 SRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
                 + M+  M +    EPN  ++  ++  C+ G  L  G+ +H  V++    + ++F
Sbjct: 116 GEHALGVEMFLDMVRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRD-SEYDVF 174

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V  ++V+ Y  CG +  A   F  +P+ +V+SW + ++ +   +   +A+ L    ++ R
Sbjct: 175 VGTSIVNMYVKCGQMGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLL--TEMLR 232

Query: 309 KRPSIRSF--VEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNV 364
              +I  +     L   S+T  +    Q+HG + K  L  DH    V+ AL   Y     
Sbjct: 233 SGVAINKYTATSILLACSQTSMIREANQVHGMIIKSELYLDHV---VKEALISTYANAGA 289

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++    VF+     S     S   S +   +++ ++++   M+ + +  ++   ++   +
Sbjct: 290 VQLCEKVFQEVDTVSNRSIWSAFISGVSRHSVQRSIQLLRRMLFQCLRPNDKCYASVFSS 349

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           +    S+ LG  R LH   IK GF   + V+ +L   YSRC  ++ S++VFE++   + V
Sbjct: 350 VD---SSELG--RQLHPLVIKDGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEV 404

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +TS++ G++ +G   EA  +L  MI  G  P+ V+   +L+ CN    + +G+ V   +
Sbjct: 405 SWTSMIAGFATHGHSVEAFQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKGKEVHGHV 464

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
              YG      H  C++ M  +   L  A +L   TP   D +M SS++     +G
Sbjct: 465 LRAYGRTTSINH--CLVSMYSKCKDLQTARKLFDATP-CKDQIMLSSMISGYATNG 517


>gi|222635654|gb|EEE65786.1| hypothetical protein OsJ_21486 [Oryza sativa Japonica Group]
          Length = 749

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 169/599 (28%), Positives = 305/599 (50%), Gaps = 12/599 (2%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R+ V++  +I+   +      AL L+  M+  G         S +  C+  G    G
Sbjct: 95  MYGRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELGDVGTG 154

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            Q+H   L    G +L + + LV +Y + G       LF+ + +++L +W  ++  F + 
Sbjct: 155 RQVHAHALKSERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSIIAGFAQQ 214

Query: 190 SRPDEVLRMYNKMKAEGVE-PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
               E L+++ +M  EG   PN   F    R C      + G+Q+H   IK   +D +++
Sbjct: 215 GFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYR-LDRDLY 273

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V  +L D Y+ C +L  A+ +F  I   D++SWNSIV+ Y+   L+ +AL LF  M+   
Sbjct: 274 VGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSG 333

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            RP   +    L        +Y G+ IH Y+ KLG D G V V ++L  MY +C+ + S+
Sbjct: 334 LRPDGITVRGLLCACVGRDALYHGRLIHSYLVKLGLD-GDVSVCNSLLSMYARCSDLSSA 392

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           + VF     + +   NS++T+     + ++ +++F  +      LD ++L+  L     S
Sbjct: 393 MDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNVL-----S 447

Query: 429 ASANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI-PSPNVV 484
           ASA LG     + +H  A K+G   +  +S +L+D Y++CG ++ + ++FE +  + +V 
Sbjct: 448 ASAELGYFEMVKQVHAYAFKAGLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVF 507

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            ++S++ GY++ G  +EA D+   M   G+ P+ VTF+ VL  C+  G V EG   ++ M
Sbjct: 508 SWSSLIVGYAQFGYAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEGCYYYSIM 567

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           +  YGI   R+H SC++D+L RAG L +A   + Q P   D +MW +LL + ++H +  +
Sbjct: 568 EPEYGIVPTREHCSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLLAASKMHNDMEM 627

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           G+R A  ++ ++P   A Y  + N Y+  G +    ++++      + +  G S +++ 
Sbjct: 628 GKRAAEGILNIDPSHSAAYVLLCNIYAASGNWNEFARLKKAMRTSGVKKSPGKSWVKLK 686



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 124/492 (25%), Positives = 224/492 (45%), Gaps = 36/492 (7%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLS-------LGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +++++S CS      +G ++H  +++            N  +G+ L+ +Y          
Sbjct: 47  YAALVSACSRLRSLPQGRRVHRHLVASSSSSPDAQLAGNTVLGNHLITMY---------- 96

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
                   RN  +W  ++ A  +  R  + L +++ M   G   +  +    VR C+   
Sbjct: 97  -------GRNPVSWASVIAAHVQNGRAGDALGLFSSMLRSGTAADQFALGSAVRACTELG 149

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  G+Q+H+H +K      ++ V NALV  YS  G + +    F+ I   D+ISW SI+
Sbjct: 150 DVGTGRQVHAHALK-SERGSDLIVQNALVTMYSKNGLVDDGFMLFERIKDKDLISWGSII 208

Query: 286 SIYADYDLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           + +A      +AL++F  M +     P+   F          G+  +G+QIHG   K   
Sbjct: 209 AGFAQQGFEMEALQVFREMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRL 268

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D   ++V  +L+DMY +C  ++S+   F       L   NS++ +    G + +A+ +F 
Sbjct: 269 DR-DLYVGCSLSDMYARCKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFS 327

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M D G+  D +T+   L A  V   A L   RL+H   +K G + +++V  SL+  Y+R
Sbjct: 328 EMRDSGLRPDGITVRGLLCA-CVGRDA-LYHGRLIHSYLVKLGLDGDVSVCNSLLSMYAR 385

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           C  +  +  VF +I   +VV + SI+   +++    E L +  ++ +     D+++   V
Sbjct: 386 CSDLSSAMDVFHEIKDQDVVTWNSILTACAQHNHPEEVLKLFSLLNKSEPSLDRISLNNV 445

Query: 525 LAGCNHSG---MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           L+     G   MVK  Q+   + K+  G+  DR   + +ID   + G LD A  L +   
Sbjct: 446 LSASAELGYFEMVK--QVHAYAFKA--GLVDDRMLSNTLIDTYAKCGSLDDAMRLFEIMG 501

Query: 582 GGGDCMMWSSLL 593
              D   WSSL+
Sbjct: 502 NNRDVFSWSSLI 513



 Score =  143 bits (361), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 114/457 (24%), Positives = 209/457 (45%), Gaps = 19/457 (4%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N  + +YS N  +DD            LF+ +  +D++++  +I+G  +     +AL ++
Sbjct: 174 NALVTMYSKNGLVDD---------GFMLFERIKDKDLISWGSIIAGFAQQGFEMEALQVF 224

Query: 99  DEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
            EM+  G        F S    C   G +  G QIH   +      +LY+G  L D+Y R
Sbjct: 225 REMIVEGSHHPNEFHFGSAFRACGAVGSWEYGEQIHGLSIKYRLDRDLYVGCSLSDMYAR 284

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
                 A   F  +   +L +WN ++ A+       E L ++++M+  G+ P+G++   +
Sbjct: 285 CKNLDSARVAFYRIEAPDLVSWNSIVNAYSVEGLLSEALVLFSEMRDSGLRPDGITVRGL 344

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C     L  G+ +HS+++KLG +D ++ V N+L+  Y+ C  L  A   F  I   D
Sbjct: 345 LCACVGRDALYHGRLIHSYLVKLG-LDGDVSVCNSLLSMYARCSDLSSAMDVFHEIKDQD 403

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVEFLNFASRTGNVYFGKQI 335
           V++WNSI++  A ++   + L+LF    L +  PS+   S    L+ ++  G     KQ+
Sbjct: 404 VVTWNSILTACAQHNHPEEVLKLF--SLLNKSEPSLDRISLNNVLSASAELGYFEMVKQV 461

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE-SAPGRSLECCNSLMTSLLHSG 394
           H Y  K G     + + + L D Y KC  ++ ++ +FE     R +   +SL+      G
Sbjct: 462 HAYAFKAGLVDDRM-LSNTLIDTYAKCGSLDDAMRLFEIMGNNRDVFSWSSLIVGYAQFG 520

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             K+A ++F  M   GI  + VT    L A S     N G C        + G       
Sbjct: 521 YAKEAFDLFSRMRSLGIRPNHVTFIGVLTACSRVGFVNEG-CYYYSIMEPEYGIVPTREH 579

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
              ++D  +R G +  +    +++P  P+++ + +++
Sbjct: 580 CSCIVDLLARAGKLTEAANFIDQMPFEPDIIMWKTLL 616


>gi|297833228|ref|XP_002884496.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297330336|gb|EFH60755.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 547

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 157/554 (28%), Positives = 295/554 (53%), Gaps = 17/554 (3%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR---ALDLFD 169
           +  +LS   N     E  Q+H  ++      N+   S L+D       ++    A  +F+
Sbjct: 5   YKPILSQLENCRSMVELNQLHGLMIKSSVIRNVIPLSRLIDFCTTCPETMNLSYARSVFE 64

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            +   ++  WN M+R +     PD+ L  Y +M  +G  P+  +F Y+++ CS    +  
Sbjct: 65  SIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLKACSGLRDIQF 124

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G  +H  V+K G+ +VN++V+  L+  Y  CG +    + F+ IP  +V++W S++S + 
Sbjct: 125 GSCVHGFVVKTGF-EVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFV 183

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           + +   DA+E F  MQ    +P+    V+ L    R  + Y         +K  F+   V
Sbjct: 184 NNNRFSDAIEAFREMQSIGVKPNETIMVDLLVACGRCFDPYCQ-------SKFEFN---V 233

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            + ++L DMY KC  + ++  +F+  P R+L   NS++T    +G+ ++A+ MF  M+D 
Sbjct: 234 ILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDL 293

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           GI  D+VT  + ++A  +   + LG  + +H    K+GF  + A+ C+L++ Y++ G+ E
Sbjct: 294 GIAPDKVTFFSVIRASMIQGCSQLG--QTIHAYVSKTGFVKDAAIVCALVNMYAKTGNAE 351

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIPDKVTFLCVLAGC 528
            + ++FE +   + + +T ++ G + +G G +AL + + M + G   PD +T+L VL  C
Sbjct: 352 SAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYAC 411

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +H G+V+EGQ  F  M+ +YG++   +HY CM+D+L RAG  ++AE L++  P      +
Sbjct: 412 SHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMPVQPTANI 471

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W +LL  C +H N  +  R+ +++ E E +   +Y  +SN Y++ G +     IRE+  +
Sbjct: 472 WGALLNGCEIHENLDLADRIRSMVSESEELGSGIYVLLSNIYAKAGRWADVKLIRESMKS 531

Query: 649 RKLTRDIGHSLIEV 662
           +++ + + HS +E 
Sbjct: 532 KRVDKLLAHSSVET 545



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 112/436 (25%), Positives = 197/436 (45%), Gaps = 14/436 (3%)

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
           +L+ A+ +F+ +    +  +N +I G     +P +AL  Y EM+  G      TF  VL 
Sbjct: 55  NLSYARSVFESIDCPSVYIWNSMIRGYSNSPNPDKALIFYQEMLRKGYSPDYFTFPYVLK 114

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
            CS       G  +H  V+  GF +N+Y+ + L+ +YM  G     L +F+++P+ N+  
Sbjct: 115 ACSGLRDIQFGSCVHGFVVKTGFEVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVA 174

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  ++  F   +R  + +  + +M++ GV+PN      ++  C  G   D   Q      
Sbjct: 175 WGSLISGFVNNNRFSDAIEAFREMQSIGVKPNETIMVDLLVAC--GRCFDPYCQSK---- 228

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
                + N+ +A +L+D Y+ CG +  A+  FD +P  +++SWNSI++ Y+      +A+
Sbjct: 229 ----FEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAM 284

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            +F  M      P   +F   +  +   G    G+ IH YV+K GF   +  V  AL +M
Sbjct: 285 CMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIV-CALVNM 343

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL-DEVT 417
           Y K    ES+  +FE    +       ++  L   G+   A+ +F  M +EG    D +T
Sbjct: 344 YAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGIT 403

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A S       G  R         G E  +     ++D  SR G  E + ++ + 
Sbjct: 404 YLGVLYACSHIGLVEEGQ-RYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKT 462

Query: 478 IP-SPNVVCFTSIMNG 492
           +P  P    + +++NG
Sbjct: 463 MPVQPTANIWGALLNG 478



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 68/267 (25%), Positives = 136/267 (50%), Gaps = 5/267 (1%)

Query: 32  LDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP 91
            D YCQ   + N+  +   ID + K G + +A+ LFD MP R++V++N +I+G  +    
Sbjct: 221 FDPYCQSKFEFNVILATSLIDMYAKCGDMRTARYLFDGMPERNLVSWNSIITGYSQNGDA 280

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++A+ ++ +M+  GI     TF SV+      G    G  IH  V   GF  +  I   L
Sbjct: 281 EEAMCMFSDMLDLGIAPDKVTFFSVIRASMIQGCSQLGQTIHAYVSKTGFVKDAAIVCAL 340

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPN 210
           V++Y + G +  A  +F++L +++   W +++         ++ L ++ +M+ EG   P+
Sbjct: 341 VNMYAKTGNAESAKKMFEDLEKKDTIAWTVVIIGLASHGHGNKALSIFQRMQEEGNATPD 400

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
           G+++  ++  CS   L++EG++  + +  L  ++  +     +VD  S  G   EA++  
Sbjct: 401 GITYLGVLYACSHIGLVEEGQRYFAEMRDLYGLEPTVEHYGCMVDILSRAGRFEEAERLV 460

Query: 271 DFIPVDDVIS-WNSIVS---IYADYDL 293
             +PV    + W ++++   I+ + DL
Sbjct: 461 KTMPVQPTANIWGALLNGCEIHENLDL 487



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 82/337 (24%), Positives = 158/337 (46%), Gaps = 11/337 (3%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           ++N+Y S   +  ++  G +N   ++F+++P  ++V +  LISG         A+  + E
Sbjct: 138 EVNMYVSTCLLHMYMCCGEVNWGLRVFEDIPKLNVVAWGSLISGFVNNNRFSDAIEAFRE 197

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M S G+K + +    +L  C            +C+     F  N+ + + L+D+Y + G 
Sbjct: 198 MQSIGVKPNETIMVDLLVACGRC------FDPYCQS---KFEFNVILATSLIDMYAKCGD 248

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD +PERNL +WN ++  + +    +E + M++ M   G+ P+ ++F  ++R 
Sbjct: 249 MRTARYLFDGMPERNLVSWNSIITGYSQNGDAEEAMCMFSDMLDLGIAPDKVTFFSVIRA 308

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
             I      G+ +H++V K G+V  +  +  ALV+ Y+  G+   AKK F+ +   D I+
Sbjct: 309 SMIQGCSQLGQTIHAYVSKTGFVK-DAAIVCALVNMYAKTGNAESAKKMFEDLEKKDTIA 367

Query: 281 WNSIVSIYADYDLIFDALELFFRMQ-LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           W  ++   A +     AL +F RMQ      P   +++  L   S  G V  G++    +
Sbjct: 368 WTVVIIGLASHGHGNKALSIFQRMQEEGNATPDGITYLGVLYACSHIGLVEEGQRYFAEM 427

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
             L     +V     + D+  +    E +  + ++ P
Sbjct: 428 RDLYGLEPTVEHYGCMVDILSRAGRFEEAERLVKTMP 464


>gi|224057824|ref|XP_002299342.1| predicted protein [Populus trichocarpa]
 gi|222846600|gb|EEE84147.1| predicted protein [Populus trichocarpa]
          Length = 684

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 170/563 (30%), Positives = 277/563 (49%), Gaps = 4/563 (0%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   GI  S  ++  +   C       +G   H ++         ++ + ++ +Y + G 
Sbjct: 1   MEDAGISVSPRSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPEFLENSVLKMYCKCGS 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FDE+ ERNL +WN ++ A+ E    D+   M++ M     +PNG ++   +R 
Sbjct: 61  LADARKVFDEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRS 120

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                 L+ GKQ+HSH I+ G +  N  V  A+ + Y  CG L  A+  F+ +   + ++
Sbjct: 121 LLNPSGLEIGKQIHSHAIRSG-LGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVA 179

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W  I+  Y   +   DAL LF +M           F   L   +    + FG+QIHG++ 
Sbjct: 180 WTGIMVGYTQAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIV 239

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           KLG +   V V + L D Y KC+ +ES+   FE     +    ++L+T     G  ++A+
Sbjct: 240 KLGLE-SEVSVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEAL 298

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           + F  +    + ++  T ++  +A S  A  N G+    H  AIKS   +      +++ 
Sbjct: 299 KTFESLRTRSVDINSFTYTSIFQACSALADFNSGA--QAHADAIKSSLVAYQHGESAMIT 356

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YSRCG ++ + +VFE I  P+ V +T+I+ GY+  G   EAL +   M   G+ P+ VT
Sbjct: 357 MYSRCGRLDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVT 416

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ VL  C+HSG+V EG+    SM S YG+     HY CM+D+  RAG L +A EL++  
Sbjct: 417 FIAVLTACSHSGLVIEGRQYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSM 476

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D M W  LL  C  + N  IG   A  L +L+P D A Y  + N Y+  G+++ + 
Sbjct: 477 PFSPDAMSWKCLLGGCWTYRNLEIGELAAENLFQLDPEDTAGYILMFNLYASFGKWKEAA 536

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
            +R+    R L +++  S I V 
Sbjct: 537 NVRKMMAERNLRKELSCSWITVK 559



 Score =  168 bits (426), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 122/489 (24%), Positives = 226/489 (46%), Gaps = 15/489 (3%)

Query: 11  RTITTLAPTCTSIVPLSSSLLLDSYCQ---PNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           R+   L   C  I  L    L     Q    NP    +  N  +  + K G L  A+K+F
Sbjct: 11  RSYKCLFEACGKIKSLFDGRLFHEQMQRTVKNPPE--FLENSVLKMYCKCGSLADARKVF 68

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
           DEM  R++V++N +IS   +     +   ++  M+    K + ST+   L    N     
Sbjct: 69  DEMRERNLVSWNTIISAYAENGVFDKGFCMFSNMLELETKPNGSTYIGFLRSLLNPSGLE 128

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            G QIH   +  G G N  + + + ++Y++ G    A  +F+++ E+N   W  ++  + 
Sbjct: 129 IGKQIHSHAIRSGLGSNASVNTAISNMYVKCGWLEGAELVFEKMSEKNAVAWTGIMVGYT 188

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +  R  + L ++ KM  EGVE +   F  +++ C+    L+ G+Q+H H++KLG ++  +
Sbjct: 189 QAERQMDALALFAKMVNEGVELDEYVFSIVLKACAGLEELNFGRQIHGHIVKLG-LESEV 247

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            V   LVDFY  C +L  A K+F++I   + +SW+++++ Y       +AL+ F  ++  
Sbjct: 248 SVGTPLVDFYVKCSNLESATKAFEWISEPNDVSWSALITGYCQMGEFEEALKTFESLRTR 307

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK---LGFDHGSVHVQSALTDMYGKCNV 364
               +  ++       S   +   G Q H    K   + + HG    +SA+  MY +C  
Sbjct: 308 SVDINSFTYTSIFQACSALADFNSGAQAHADAIKSSLVAYQHG----ESAMITMYSRCGR 363

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++ +  VFES          +++    + GN  +A+++F  M D G+  + VT    L A
Sbjct: 364 LDYATRVFESIDDPDAVAWTAIIAGYAYQGNAPEALKLFRRMQDCGVRPNAVTFIAVLTA 423

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNV 483
            S S     G  + L   +   G  + I     ++D YSR G ++ + ++   +P SP+ 
Sbjct: 424 CSHSGLVIEGR-QYLESMSSNYGVATTIDHYDCMVDIYSRAGFLQEALELIRSMPFSPDA 482

Query: 484 VCFTSIMNG 492
           + +  ++ G
Sbjct: 483 MSWKCLLGG 491


>gi|147798405|emb|CAN70142.1| hypothetical protein VITISV_032085 [Vitis vinifera]
          Length = 748

 Score =  268 bits (686), Expect = 5e-69,   Method: Compositional matrix adjust.
 Identities = 173/587 (29%), Positives = 296/587 (50%), Gaps = 47/587 (8%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL--YMRMGPSVRALDLFDELP 172
           ++LS C +   +    QIH +++  G     +  S L++       G    AL LF+ + 
Sbjct: 37  TLLSTCKS---FQNLKQIHSQIIKTGLHNTQFALSKLIEFCAISPFGNLSYALLLFESIE 93

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
           + N   WN M+R     S P   +  Y +M   GVEPN  +F ++++ C+      EGKQ
Sbjct: 94  QPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLLKSCAKVGATQEGKQ 153

Query: 233 LHSHVIKLGWVD--------VNIFVAN----------------------ALVDFYSACGS 262
           +H HV+KLG           +N++  N                      AL+  Y+  G 
Sbjct: 154 IHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAVSFTALITGYTLRGC 213

Query: 263 LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
           L +A++ F+ IPV D +SWN++++ YA      +AL  F  M+     P+  + V  L+ 
Sbjct: 214 LDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNESTMVTVLSA 273

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
            +++G++  G  +  ++     DHG   ++ + +AL DMY KC  ++ +  +FE    + 
Sbjct: 274 CAQSGSLELGNWVRSWIE----DHGLGSNLRLVNALIDMYSKCGDLDKARDLFEGICEKD 329

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   N ++    H  + K+A+ +F  M    +  ++VT  + L A +   + +LG  + +
Sbjct: 330 IISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG--KWI 387

Query: 440 HCCAIKSGFE-SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           H    K     +N ++  SL+D Y++CG+IE + QVF  +   ++  + ++++G + +G 
Sbjct: 388 HAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGLAMHGH 447

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
              AL++   M   G  PD +TF+ VL+ C+H+G+V+ G+  F+SM   Y I    QHY 
Sbjct: 448 ANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMVEDYDISPKLQHYG 507

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           CMID+LGRAG+ D+AE L++      D  +W SLL +CRVHGN  +G   A  L ELEP 
Sbjct: 508 CMIDLLGRAGLFDEAEALMKNMEMKPDGAIWGSLLGACRVHGNVELGEFAAKHLFELEPE 567

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALAR--KLTRDIGHSLIEVN 663
           +   Y  +SN Y+  G ++   +IR     +  K  +DI   L E++
Sbjct: 568 NPGAYVLLSNIYATAGRWDDVARIRTKLNDKGMKKXQDIYKMLDEID 614



 Score =  180 bits (456), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 119/408 (29%), Positives = 196/408 (48%), Gaps = 32/408 (7%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+L+ A  LF+ +   +   +N +I G      P  A+  Y  M+  G++ ++ TF  +L
Sbjct: 80  GNLSYALLLFESIEQPNQFIWNTMIRGNSLSSSPVGAIDFYVRMLLCGVEPNSYTFPFLL 139

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP-----------SVR--- 163
             C+  G   EG QIH  VL LG   + ++ + L+++Y + G            S+R   
Sbjct: 140 KSCAKVGATQEGKQIHGHVLKLGLESDPFVHTSLINMYAQNGELGYAELVFSKSSLRDAV 199

Query: 164 -----------------ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
                            A  LF+E+P R+  +WN M+  + +  R +E L  + +MK   
Sbjct: 200 SFTALITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRAN 259

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
           V PN  +   ++  C+    L+ G  + S +   G +  N+ + NAL+D YS CG L +A
Sbjct: 260 VAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHG-LGSNLRLVNALIDMYSKCGDLDKA 318

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           +  F+ I   D+ISWN ++  Y+  +   +AL LF +MQ     P+  +FV  L   +  
Sbjct: 319 RDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYL 378

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G +  GK IH Y+ K      +  + ++L DMY KC  IE++  VF     +SL   N++
Sbjct: 379 GALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAM 438

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           ++ L   G+   A+E+F  M DEG   D++T    L A S +    LG
Sbjct: 439 ISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELG 486



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 88/286 (30%), Positives = 159/286 (55%), Gaps = 4/286 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I  +   G L+ A++LF+E+P RD V++N +I+G  +    ++AL  + EM    +  + 
Sbjct: 205 ITGYTLRGCLDDARRLFEEIPVRDAVSWNAMIAGYAQSGRFEEALAFFQEMKRANVAPNE 264

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           ST  +VLS C+ +G    G  +   +   G G NL + + L+D+Y + G   +A DLF+ 
Sbjct: 265 STMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGDLDKARDLFEG 324

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + E+++ +WN+M+  +  ++   E L ++ KM+   VEPN ++F  ++  C+    LD G
Sbjct: 325 ICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPACAYLGALDLG 384

Query: 231 KQLHSHVIK--LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           K +H+++ K  LG  + +++   +L+D Y+ CG++  AK+ F  +    + SWN+++S  
Sbjct: 385 KWIHAYIDKKFLGLTNTSLWT--SLIDMYAKCGNIEAAKQVFAGMKPKSLGSWNAMISGL 442

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
           A +     ALELF +M+     P   +FV  L+  S  G V  G+Q
Sbjct: 443 AMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQ 488



 Score = 98.2 bits (243), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 70/290 (24%), Positives = 135/290 (46%), Gaps = 7/290 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M    + P   T+ T+   C     L     + S+ + +    N+   N  ID + K G 
Sbjct: 255 MKRANVAPNESTMVTVLSACAQSGSLELGNWVRSWIEDHGLGSNLRLVNALIDMYSKCGD 314

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A+ LF+ +  +D++++N++I G       K+AL L+ +M    ++ +  TF S+L  
Sbjct: 315 LDKARDLFEGICEKDIISWNVMIGGYSHMNSYKEALALFRKMQQSNVEPNDVTFVSILPA 374

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           C+  G    G  IH  +     GL N  + + L+D+Y + G    A  +F  +  ++L +
Sbjct: 375 CAYLGALDLGKWIHAYIDKKFLGLTNTSLWTSLIDMYAKCGNIEAAKQVFAGMKPKSLGS 434

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+         +  L ++ +M+ EG EP+ ++F  ++  CS   L++ G+Q  S ++
Sbjct: 435 WNAMISGLAMHGHANMALELFRQMRDEGFEPDDITFVGVLSACSHAGLVELGRQCFSSMV 494

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAK---KSFDFIPVDDVISWNSIV 285
           +   +   +     ++D     G   EA+   K+ +  P  D   W S++
Sbjct: 495 EDYDISPKLQHYGCMIDLLGRAGLFDEAEALMKNMEMKP--DGAIWGSLL 542


>gi|414885414|tpg|DAA61428.1| TPA: hypothetical protein ZEAMMB73_429908 [Zea mays]
          Length = 817

 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 177/627 (28%), Positives = 335/627 (53%), Gaps = 19/627 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           + + +++     ++ +VK G + +A   F  MP R++V++   I+G  +   P  A+ L 
Sbjct: 205 DSEYDVFVGTSIVNMYVKCGQMGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLL 264

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EM+  G+  +  T +S+L  CS      E  Q+H  ++     L+  +   L+  Y   
Sbjct: 265 TEMLRSGVAINKYTATSILLACSQTSMIREANQVHGMIIKSELYLDHVVKEALISTYANA 324

Query: 159 GPSVRALDLFDELPE-RNLATWNLMLRAFCELS--RPDEVLRMYNKMKAEGVEPNGLSFC 215
           G       +F E+    N + W+  +      S  R  ++LR   +M  + + PN   + 
Sbjct: 325 GAVQLCEKVFQEVDTVSNRSIWSAFISGVSRHSVQRSIQLLR---RMLFQCLRPNDKCYA 381

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            +        L   G+QLH  VIK G++ V + VA+AL   YS C  L ++ K F+ +  
Sbjct: 382 SVFSSVDSSEL---GRQLHPLVIKDGFIHV-VLVASALSTMYSRCNDLKDSYKVFEEMQE 437

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +SW S+++ +A +    +A ++   M      P+  S    L+  +    +  GK++
Sbjct: 438 QDEVSWTSMIAGFATHGHSVEAFQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKGKEV 497

Query: 336 HGYVTKLGFDHG-SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           HG+V +    +G +  +   L  MY KC  ++++  +F++ P +     +S+++    +G
Sbjct: 498 HGHVLRA---YGRTTSINHCLVSMYSKCKDLQTARKLFDATPCKDQIMLSSMISGYATNG 554

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             ++A+ +F  M+  G  +D    S+ +   +  A    G  +LLH  A K G  S+++V
Sbjct: 555 YSEEALSLFQLMLAAGFHIDRFLCSSIISICANMARPFCG--KLLHGYASKVGILSDLSV 612

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           S SL+  YS+ G+++ S +VF+++  P++V +T+I++GY+++G  ++AL + ++MI+ G+
Sbjct: 613 SSSLVKLYSKSGNLDDSRKVFDELDVPDLVTWTAIIDGYAQHGSSQDALALFDLMIRCGV 672

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD V  + VL+ C  +G+V+EG   FNSM++VYG++    HY CM+D+LGR+G L +A+
Sbjct: 673 KPDTVILVSVLSACGRNGLVEEGFKHFNSMRTVYGVEPVLHHYCCMVDLLGRSGRLVEAK 732

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
             ++  P   + M+WS+LL +CRVH + ++GR V N + E E  D   ++ +SN  +  G
Sbjct: 733 SFIESMPVKPNSMVWSTLLAACRVHDDVVLGRFVENKIHE-ENCDSGCFATMSNIRANSG 791

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIE 661
           ++E  M+IR++   + + ++ G S +E
Sbjct: 792 DWEGVMEIRKS--VKDVEKEPGWSFLE 816



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 136/566 (24%), Positives = 272/566 (48%), Gaps = 22/566 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEM 101
           + Y  +  +D   K G L  A + F++   R  +V +N  ISG  +       + ++ +M
Sbjct: 106 DAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAVRNGEHALGVEMFLDM 165

Query: 102 VSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           V     E  S T+S VLS C+       G  +H  VL      ++++G+ +V++Y++ G 
Sbjct: 166 VRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRDSEYDVFVGTSIVNMYVKCGQ 225

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A++ F  +P RN+ +W   +  F +   P   + +  +M   GV  N  +   ++  
Sbjct: 226 MGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLLTEMLRSGVAINKYTATSILLA 285

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVI 279
           CS   ++ E  Q+H  +IK   + ++  V  AL+  Y+  G++   +K F  +  V +  
Sbjct: 286 CSQTSMIREANQVHGMIIK-SELYLDHVVKEALISTYANAGAVQLCEKVFQEVDTVSNRS 344

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
            W++ +S  + +  +  +++L  RM     RP+ + +       S   +   G+Q+H  V
Sbjct: 345 IWSAFISGVSRHS-VQRSIQLLRRMLFQCLRPNDKCYASVF---SSVDSSELGRQLHPLV 400

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF H  V V SAL+ MY +CN ++ S  VFE    +      S++      G+  +A
Sbjct: 401 IKDGFIH-VVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEVSWTSMIAGFATHGHSVEA 459

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
            ++   M+ EG   ++V+LS  L A ++      G  + +H   +++ +    +++  L+
Sbjct: 460 FQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKG--KEVHGHVLRA-YGRTTSINHCLV 516

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             YS+C  ++ + ++F+  P  + +  +S+++GY+ NG   EAL + ++M+  G   D+ 
Sbjct: 517 SMYSKCKDLQTARKLFDATPCKDQIMLSSMISGYATNGYSEEALSLFQLMLAAGFHIDR- 575

Query: 520 TFLC--VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            FLC  +++ C +      G+L+      V GI +D    S ++ +  ++G LD + ++ 
Sbjct: 576 -FLCSSIISICANMARPFCGKLLHGYASKV-GILSDLSVSSSLVKLYSKSGNLDDSRKVF 633

Query: 578 QQ--TPGGGDCMMWSSLLRSCRVHGN 601
            +   P   D + W++++     HG+
Sbjct: 634 DELDVP---DLVTWTAIIDGYAQHGS 656



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 116/476 (24%), Positives = 219/476 (46%), Gaps = 20/476 (4%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLMLRAFCEL 189
           Q++C     G   + YI S +VDL  + G    AL  F++   R ++  WN  +      
Sbjct: 93  QLYCAAWKDGLSRDAYICSTMVDLLAKHGRLGDALRAFEDGEYRGSVVCWNTAISGAVRN 152

Query: 190 SRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
                 + M+  M +    EPN  ++  ++  C+ G  L  G+ +H  V++    + ++F
Sbjct: 153 GEHALGVEMFLDMVRGSTCEPNSFTYSGVLSACAAGEELGVGRAVHGMVLRRD-SEYDVF 211

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V  ++V+ Y  CG +  A   F  +P+ +V+SW + ++ +   +   +A+ L    ++ R
Sbjct: 212 VGTSIVNMYVKCGQMGAAMNEFWRMPIRNVVSWTTAIAGFVQQEDPVNAMLLL--TEMLR 269

Query: 309 KRPSIRSF--VEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNV 364
              +I  +     L   S+T  +    Q+HG + K  L  DH    V+ AL   Y     
Sbjct: 270 SGVAINKYTATSILLACSQTSMIREANQVHGMIIKSELYLDHV---VKEALISTYANAGA 326

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++    VF+     S     S   S +   +++ ++++   M+ + +  ++   ++   +
Sbjct: 327 VQLCEKVFQEVDTVSNRSIWSAFISGVSRHSVQRSIQLLRRMLFQCLRPNDKCYASVFSS 386

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           +    S+ LG  R LH   IK GF   + V+ +L   YSRC  ++ S++VFE++   + V
Sbjct: 387 VD---SSELG--RQLHPLVIKDGFIHVVLVASALSTMYSRCNDLKDSYKVFEEMQEQDEV 441

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +TS++ G++ +G   EA  +L  MI  G  P+ V+   +L+ CN    + +G+ V   +
Sbjct: 442 SWTSMIAGFATHGHSVEAFQVLRNMIAEGFTPNDVSLSAILSACNIPECLLKGKEVHGHV 501

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
              YG      H  C++ M  +   L  A +L   TP   D +M SS++     +G
Sbjct: 502 LRAYGRTTSINH--CLVSMYSKCKDLQTARKLFDATP-CKDQIMLSSMISGYATNG 554


>gi|449462814|ref|XP_004149135.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
 gi|449523485|ref|XP_004168754.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g13600-like [Cucumis sativus]
          Length = 687

 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 182/648 (28%), Positives = 314/648 (48%), Gaps = 77/648 (11%)

Query: 82  ISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF 141
           ++G G  +H K  L   D          +S FS +L+ C+ +    +  ++H  ++   F
Sbjct: 1   MAGNGLVKHLKGDLLFLD----------SSPFSKLLNQCARSRSARDTSRVHACIIKSPF 50

Query: 142 GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL------------------------- 176
               +I + L+D+Y + G    A  LFD + ERN+                         
Sbjct: 51  ASETFIQNRLIDVYGKCGCVDVARKLFDRMLERNIFSWNSIICAFTKSGFLDDAVHIFEK 110

Query: 177 ------ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
                  +WN M+  F +  R DE L  + +M   G   N  SF   +  C+    L  G
Sbjct: 111 MPQVDQCSWNSMISGFEQHGRFDEALVYFAQMHGHGFLVNEYSFGSALSACAGLQDLKLG 170

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
            Q+HS V +  ++  ++++ +ALVD YS CG +  A+  FD + V   +SWNS+++ Y  
Sbjct: 171 SQIHSLVYRSNYLS-DVYMGSALVDMYSKCGRVEYAQSVFDEMTVRSRVSWNSLITCYEQ 229

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
              + +AL++F  M  C   P   +    ++  +    +  G+QIH  V K       + 
Sbjct: 230 NGPVDEALKIFVEMIKCGVEPDEVTLASVVSACATISAIKEGQQIHARVVKCDEFRNDLI 289

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV--- 407
           + +AL DMY KCN I  +  +F+  P RS+    S+++    +  +K A  MF  M+   
Sbjct: 290 LGNALLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKD 349

Query: 408 ------------DEGIGLDEVTLSTTLKALSV-----------SASANLGSCRL---LHC 441
                         G   + + L   LK  SV           +A ANL   +L    H 
Sbjct: 350 VITWNALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHS 409

Query: 442 CAIKSGF------ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
             +K GF      +S++ V  SL+D Y +CG +E   +VF+ +   + V + +++ GY++
Sbjct: 410 HVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQ 469

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           NG G +AL++   M++ G  PD VT + VL  C+H+G++ EG+  F SM + +G+   + 
Sbjct: 470 NGFGNKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKD 529

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           HY+CM+D+LGRAG L++A+ L+++     D ++W SLL +C+VH N  +G  V   L+E+
Sbjct: 530 HYTCMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLAACKVHRNIQLGEYVVKKLLEV 589

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +P +   Y  +SN Y+E  +++  +++R+    R + +  G S IE+ 
Sbjct: 590 DPENSGPYVLLSNMYAENRDWKNVVRVRKLMRQRGVVKQPGCSWIEIQ 637



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 131/485 (27%), Positives = 229/485 (47%), Gaps = 38/485 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI+S N  I  F KSG L+ A  +F++MP  D  ++N +ISG  +     +AL  + +M 
Sbjct: 84  NIFSWNSIICAFTKSGFLDDAVHIFEKMPQVDQCSWNSMISGFEQHGRFDEALVYFAQMH 143

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            HG   +  +F S LS C+       G QIH  V    +  ++Y+GS LVD+Y + G   
Sbjct: 144 GHGFLVNEYSFGSALSACAGLQDLKLGSQIHSLVYRSNYLSDVYMGSALVDMYSKCGRVE 203

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FDE+  R+  +WN ++  + +    DE L+++ +M   GVEP+ ++   +V  C+
Sbjct: 204 YAQSVFDEMTVRSRVSWNSLITCYEQNGPVDEALKIFVEMIKCGVEPDEVTLASVVSACA 263

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-------- 274
               + EG+Q+H+ V+K      ++ + NAL+D Y+ C  + EA+  FD +P        
Sbjct: 264 TISAIKEGQQIHARVVKCDEFRNDLILGNALLDMYAKCNRINEARIIFDMMPIRSVVSET 323

Query: 275 -----------------------VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
                                  V DVI+WN++++         +AL LF  ++     P
Sbjct: 324 SMVSGYAKASKVKVARYMFSNMMVKDVITWNALIAGCTQNGENEEALILFRLLKRESVWP 383

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF-----DHGSVHVQSALTDMYGKCNVIE 366
           +  +F   LN  +   ++  G+Q H +V K GF     +   V V ++L DMY KC  +E
Sbjct: 384 THYTFGNLLNACANLADLQLGRQAHSHVLKHGFRFQYGEDSDVFVGNSLIDMYMKCGSVE 443

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           +   VF+    +     N+++     +G    A+E+F  M++ G   D VT+   L A S
Sbjct: 444 NGCRVFQHMLEKDCVSWNAMIVGYAQNGFGNKALEVFCKMLESGEAPDHVTMIGVLCACS 503

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVC 485
            +   + G        A           +C ++D   R G++E +  + E++   P+ + 
Sbjct: 504 HAGLLDEGRYYFRSMTAQHGLMPLKDHYTC-MVDLLGRAGYLEEAKNLIEEMSMQPDAIV 562

Query: 486 FTSIM 490
           + S++
Sbjct: 563 WGSLL 567



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 69/276 (25%), Positives = 130/276 (47%), Gaps = 21/276 (7%)

Query: 31  LLDSYCQPN------------PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY 78
           LLD Y + N            P  ++ S    +  + K+  +  A+ +F  M  +D++T+
Sbjct: 294 LLDMYAKCNRINEARIIFDMMPIRSVVSETSMVSGYAKASKVKVARYMFSNMMVKDVITW 353

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
           N LI+GC +    ++AL L+  +    +  +  TF ++L+ C+N      G Q H  VL 
Sbjct: 354 NALIAGCTQNGENEEALILFRLLKRESVWPTHYTFGNLLNACANLADLQLGRQAHSHVLK 413

Query: 139 LGFGL------NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
            GF        ++++G+ L+D+YM+ G       +F  + E++  +WN M+  + +    
Sbjct: 414 HGFRFQYGEDSDVFVGNSLIDMYMKCGSVENGCRVFQHMLEKDCVSWNAMIVGYAQNGFG 473

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK-QLHSHVIKLGWVDVNIFVAN 251
           ++ L ++ KM   G  P+ ++   ++  CS   LLDEG+    S   + G + +      
Sbjct: 474 NKALEVFCKMLESGEAPDHVTMIGVLCACSHAGLLDEGRYYFRSMTAQHGLMPLKDHYT- 532

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
            +VD     G L EAK   + + +  D I W S+++
Sbjct: 533 CMVDLLGRAGYLEEAKNLIEEMSMQPDAIVWGSLLA 568


>gi|147856413|emb|CAN82500.1| hypothetical protein VITISV_004914 [Vitis vinifera]
          Length = 1408

 Score =  268 bits (686), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 184/680 (27%), Positives = 328/680 (48%), Gaps = 66/680 (9%)

Query: 46   SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL----YDEM 101
            ++   I  ++  G   SA  +F     R+ + +N  +    +F+    +L++    + E+
Sbjct: 609  AAKNLISSYLGFGDFWSAAMVFYVGLPRNYLKWNSFVE---EFKSSAGSLHIVLEVFKEL 665

Query: 102  VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               G+   +  +S  L  C+       G++IH  ++  GF L++Y+   L++ Y R    
Sbjct: 666  HGKGVVFDSEVYSVALKTCTRVMDIWLGMEIHGCLIKRGFDLDVYLRCALMNFYGRCWGL 725

Query: 162  VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +A  +F E+P      WN  +    +  +  + + ++ KM+   ++    +   +++ C
Sbjct: 726  EKANQVFHEMPNPEALLWNEAIILNLQSEKLQKGVELFRKMQFSFLKAETATIVRVLQAC 785

Query: 222  SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                 L+  KQ+H +V + G +D ++ + N L+  YS  G L  A++ FD +   +  SW
Sbjct: 786  GKMGALNAAKQIHGYVFRFG-LDSDVSLCNPLISMYSKNGKLELARRVFDSMENRNTSSW 844

Query: 282  NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF-------------VEFLNFASRT-- 326
            NS++S YA    + DA  LF+ ++    +P I ++              E LN   R   
Sbjct: 845  NSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNILQRMQG 904

Query: 327  --------------------GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
                                G +  GK+ HGYV + GFD   V+V ++L DMY K + + 
Sbjct: 905  EGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFD-CDVYVGTSLIDMYVKNHSLX 963

Query: 367  SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL---- 422
            S+ AVF++   R++   NSL++     G  +DA+ +   M  EGI  D VT +  +    
Sbjct: 964  SAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMISGYA 1023

Query: 423  ------KAL---SVSASANLGSC---------RLLHCCAIKSGFESNIAVSCSLMDAYSR 464
                  KA    S S +  L +C         + +HC +I++GF  ++ V+ +L+D YS+
Sbjct: 1024 MWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIEDVFVATALIDMYSK 1083

Query: 465  CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
               ++ +H+VF +I +  +  +  ++ G++  G+G+EA+ +   M + G+ PD +TF  +
Sbjct: 1084 SSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAITFTAL 1143

Query: 525  LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
            L+ C +SG++ EG   F+SM + Y I    +HY CM+D+LGRAG LD+A +L+   P   
Sbjct: 1144 LSACKNSGLIGEGWKYFDSMITDYRIVPRLEHYCCMVDLLGRAGYLDEAWDLIHTMPLKP 1203

Query: 585  DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
            D  +W +LL SCR+H N       A  L +LEP + A Y  + N YS    +E    +RE
Sbjct: 1204 DATIWGALLGSCRIHKNLXFAETAAKNLFKLEPNNSANYILMMNLYSIFNRWEDMDHLRE 1263

Query: 645  TALARKLTRDIGHSLIEVNS 664
               A  +      S I++N 
Sbjct: 1264 LMGAAGVRNRQVWSWIQINQ 1283



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 101/367 (27%), Positives = 170/367 (46%), Gaps = 39/367 (10%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDM----VTYNLLISGCGKFRHPKQALYLY 98
            N  S N  I  +   G LN A  LF E+ + DM    VT+N L+SG     + ++ L + 
Sbjct: 840  NTSSWNSMISSYAALGFLNDAWSLFYELESSDMKPDIVTWNCLLSGHFLHGYKEEVLNIL 899

Query: 99   DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
              M   G K ++S+ +SVL   S  GF   G + H  VL  GF  ++Y+G+ L+D+Y++ 
Sbjct: 900  QRMQGEGFKPNSSSMTSVLQAISELGFLNMGKETHGYVLRNGFDCDVYVGTSLIDMYVKN 959

Query: 159  GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE---------- 208
                 A  +FD +  RN+  WN ++  +      ++ LR+ N+M+ EG++          
Sbjct: 960  HSLXSAQAVFDNMKNRNIFAWNSLVSGYSFKGMFEDALRLLNQMEKEGIKPDLVTWNGMI 1019

Query: 209  --------------PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
                          PN  S   ++R C+   LL +GK++H   I+ G+++ ++FVA AL+
Sbjct: 1020 SGYAMWGCARKAFMPNSASITCLLRACASLSLLQKGKEIHCLSIRNGFIE-DVFVATALI 1078

Query: 255  DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
            D YS   SL  A K F  I    + SWN ++  +A + L  +A+ +F  MQ     P   
Sbjct: 1079 DMYSKSSSLKNAHKVFRRIQNKTLASWNCMIMGFAIFGLGKEAISVFNEMQKVGVGPDAI 1138

Query: 315  SFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            +F   L+    +G +     YF   I  Y      +H        + D+ G+   ++ + 
Sbjct: 1139 TFTALLSACKNSGLIGEGWKYFDSMITDYRIVPRLEH-----YCCMVDLLGRAGYLDEAW 1193

Query: 370  AVFESAP 376
             +  + P
Sbjct: 1194 DLIHTMP 1200


>gi|225425015|ref|XP_002267613.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930 [Vitis vinifera]
 gi|297738214|emb|CBI27415.3| unnamed protein product [Vitis vinifera]
          Length = 743

 Score =  268 bits (685), Expect = 6e-69,   Method: Compositional matrix adjust.
 Identities = 176/620 (28%), Positives = 312/620 (50%), Gaps = 69/620 (11%)

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +  S++ ++S+L +C  +   T+  ++HC +L        ++ + L+  Y ++G    A 
Sbjct: 1   MSSSSNYYASLLKLCCESQNQTQAKKLHCLILKTIKQPETFLSNNLITAYYKLGNLAYAH 60

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM----------------------- 202
            +FD +P+ NL +WN +L  + +L    ++ +++N M                       
Sbjct: 61  HVFDHIPQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSD 120

Query: 203 ---------KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
                    K   +  N ++F  M+  CS    +D G+Q++  ++K G+   ++FV + L
Sbjct: 121 AVRVYKLMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGF-GSDVFVGSPL 179

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDV-------------------------------ISWN 282
           VD Y+  G + +AK+ FD +P  +V                               ISW 
Sbjct: 180 VDMYTKLGLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWT 239

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            +++      L  +AL++F  M+L        +F   L        +  GKQIH YV + 
Sbjct: 240 IMITGLMQNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRT 299

Query: 343 GFDHG-SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             DH  +V V SAL DMY KC  I+S+  VF+  P +++    +++     +G  ++AV+
Sbjct: 300 --DHKDNVFVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVK 357

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M   G+  D+ TL + + + +  AS   G+    HC A+ SG  S I VS +L+  
Sbjct: 358 IFFEMQRNGVEPDDFTLGSVISSCANLASLEEGA--QFHCRALVSGLISFITVSNALITL 415

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y +CG  E SH++F ++   + V +T+++ GY++ G   E + + E M+  GL PD VTF
Sbjct: 416 YGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTF 475

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL+ C+ +G+V++G   F SM   +GI     H +C+ID+LGRAG L++A   +   P
Sbjct: 476 IGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMP 535

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              D + W++LL SCRVHG+  IG+  A+ L+ LEP + A Y  +S+ Y+  G+++   Q
Sbjct: 536 CHPDVVGWATLLSSCRVHGDMEIGKWAADSLIALEPQNPASYVLLSSLYASKGKWDKVAQ 595

Query: 642 IRETALARKLTRDIGHSLIE 661
           +R     +++ ++ G+S I+
Sbjct: 596 LRRGMRDKRVRKEPGYSWIK 615



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 140/503 (27%), Positives = 234/503 (46%), Gaps = 39/503 (7%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ N++S N  +  + K G L+  +++F+ MP RD V++NL ISG   +     A+ +Y 
Sbjct: 67  PQPNLFSWNTILSVYSKLGLLSQMQQIFNLMPFRDGVSWNLAISGYANYGSCSDAVRVYK 126

Query: 100 EMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            M+    +  +  TFS++L +CS       G QI+ ++L  GFG ++++GSPLVD+Y ++
Sbjct: 127 LMLKDAAMNLNRITFSTMLILCSKFRCVDLGRQINGQILKFGFGSDVFVGSPLVDMYTKL 186

Query: 159 GPSVRALDLFDELPERNLATWNLML-------------RAFCELSRPD------------ 193
           G    A   FDE+PERN+   N M+             R FC L   D            
Sbjct: 187 GLIYDAKRYFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLM 246

Query: 194 ------EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 E L M+ +M+  G   +  +F  ++  C   + L EGKQ+H++VI+    D N+
Sbjct: 247 QNGLEREALDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKD-NV 305

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV +ALVD YS C S+  A+  F  +P  +VISW +++  Y       +A+++FF MQ  
Sbjct: 306 FVGSALVDMYSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRN 365

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   +    ++  +   ++  G Q H      G     + V +AL  +YGKC   E+
Sbjct: 366 GVEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLI-SFITVSNALITLYGKCGSTEN 424

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           S  +F     R      +L+      G   + + +F  M+  G+  D VT    L A S 
Sbjct: 425 SHRLFTEMNIRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSR 484

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCF 486
           +     G  +       + G    +     ++D   R G +E +      +P  P+VV +
Sbjct: 485 AGLVEKG-LQYFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMPCHPDVVGW 543

Query: 487 TSIMNGYSRNG---MGREALDML 506
            ++++    +G   +G+ A D L
Sbjct: 544 ATLLSSCRVHGDMEIGKWAADSL 566



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 91/345 (26%), Positives = 171/345 (49%), Gaps = 7/345 (2%)

Query: 35  YCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94
           Y    P+ N+   N  I   ++ G +  +++LF  +  RD +++ ++I+G  +    ++A
Sbjct: 195 YFDEMPERNVVMCNTMITGLMRCGMIEESQRLFCGLKERDSISWTIMITGLMQNGLEREA 254

Query: 95  LYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
           L ++ EM   G      TF SVL+ C +     EG QIH  V+      N+++GS LVD+
Sbjct: 255 LDMFREMRLAGFAMDQFTFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDM 314

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y +      A  +F  +P++N+ +W  ML  + +    +E ++++ +M+  GVEP+  + 
Sbjct: 315 YSKCRSIKSAETVFKRMPQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTL 374

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++  C+    L+EG Q H   +  G +   I V+NAL+  Y  CGS   + + F  + 
Sbjct: 375 GSVISSCANLASLEEGAQFHCRALVSGLISF-ITVSNALITLYGKCGSTENSHRLFTEMN 433

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
           + D +SW ++++ YA +    + + LF RM     +P   +F+  L+  SR G V  G Q
Sbjct: 434 IRDEVSWTALLAGYAQFGKANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQ 493

Query: 335 IHGYVTKLGFDHGSVHVQ---SALTDMYGKCNVIESSVAVFESAP 376
              Y   +  +HG + +    + + D+ G+   +E +     + P
Sbjct: 494 ---YFESMIKEHGIMPIVDHCTCIIDLLGRAGRLEEARNFINNMP 535



 Score =  123 bits (309), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 67/277 (24%), Positives = 144/277 (51%), Gaps = 2/277 (0%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T  ++   C S++ L     + +Y  + + + N++  +  +D + K   + SA+ +F  M
Sbjct: 272 TFGSVLTACGSLLALGEGKQIHAYVIRTDHKDNVFVGSALVDMYSKCRSIKSAETVFKRM 331

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P ++++++  ++ G G+    ++A+ ++ EM  +G++    T  SV+S C+N     EG 
Sbjct: 332 PQKNVISWTAMLVGYGQNGFSEEAVKIFFEMQRNGVEPDDFTLGSVISSCANLASLEEGA 391

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q HCR L  G    + + + L+ LY + G +  +  LF E+  R+  +W  +L  + +  
Sbjct: 392 QFHCRALVSGLISFITVSNALITLYGKCGSTENSHRLFTEMNIRDEVSWTALLAGYAQFG 451

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           + +E + ++ +M A G++P+G++F  ++  CS   L+++G Q    +IK   +   +   
Sbjct: 452 KANETIGLFERMLAHGLKPDGVTFIGVLSACSRAGLVEKGLQYFESMIKEHGIMPIVDHC 511

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
             ++D     G L EA+   + +P   DV+ W +++S
Sbjct: 512 TCIIDLLGRAGRLEEARNFINNMPCHPDVVGWATLLS 548


>gi|115462637|ref|NP_001054918.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|48475165|gb|AAT44234.1| unknown protein, contains PPR repeat [Oryza sativa Japonica Group]
 gi|113578469|dbj|BAF16832.1| Os05g0212100 [Oryza sativa Japonica Group]
 gi|215695208|dbj|BAG90399.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|222630605|gb|EEE62737.1| hypothetical protein OsJ_17540 [Oryza sativa Japonica Group]
          Length = 822

 Score =  268 bits (685), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 181/632 (28%), Positives = 332/632 (52%), Gaps = 30/632 (4%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           +N  +  + + G + SA+ +FD M   RD+V++  + S   +    +++L L  EM+  G
Sbjct: 87  ANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCLARNGAERESLLLIGEMLESG 146

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLG-FGLNLYIGSPLVDLYMRMGPSVR 163
           +  +A T  +V   C     Y     +   ++  +G +G ++ +GS L+D+  R G    
Sbjct: 147 LLPNAYTLCAVAHACFPHELYCLVGGVVLGLVHKMGLWGTDIAVGSALIDMLARNGDLAS 206

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD L E+ +  W L++  + +    +E + ++     +G EP+  +   M+  C+ 
Sbjct: 207 ARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDFLEDGFEPDRYTMSSMISACTE 266

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG---SLIEAKKSFDFIPVDDVIS 280
              +  G QLHS  +++G+   +  V+  LVD Y+      ++  A K F+ +  +DVIS
Sbjct: 267 LGSVRLGLQLHSLALRMGFAS-DACVSCGLVDMYAKSNIEQAMDYANKVFERMRKNDVIS 325

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           W +++S Y    +  + + + F   L    +P+  ++   L   +   +   G+Q+H +V
Sbjct: 326 WTALISGYVQSGVQENKVMVLFGEMLNESIKPNHITYSSILKACANISDHDSGRQVHAHV 385

Query: 340 TKLGFDHGSVH-VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            K   +  + H V +AL  MY +   +E +  VF     RS       M S +  G  +D
Sbjct: 386 IK--SNQAAAHTVGNALVSMYAESGCMEEARRVFNQLYERS-------MISCITEG--RD 434

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG---SCRLLHCCAIKSGFESNIAVS 455
           A       +D  IG  ++ +S++  A  +SA+A++G     + LH   +K+GF S+  VS
Sbjct: 435 AP------LDHRIGRMDMGISSSTFASLISAAASVGMLTKGQQLHAMTLKAGFGSDRFVS 488

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            SL+  YSRCG++E + + F ++   NV+ +TS+++G +++G    AL +   MI  G+ 
Sbjct: 489 NSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILTGVK 548

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P+ VT++ VL+ C+H G+V+EG+  F SM+  +G+    +HY+CM+D+L R+G++ +A E
Sbjct: 549 PNDVTYIAVLSACSHVGLVREGKEYFRSMQRDHGLIPRMEHYACMVDLLARSGLVKEALE 608

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            + + P   D ++W +LL +CR H N  +G   A  ++ELEP D A Y  +SN Y++ G 
Sbjct: 609 FINEMPLKADALVWKTLLGACRSHDNIEVGEIAAKNVIELEPRDPAPYVLLSNLYADAGL 668

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           ++   +IR       L ++ G S +EV N+ H
Sbjct: 669 WDEVARIRSAMRDNNLNKETGLSWMEVENTTH 700



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 87/365 (23%), Positives = 180/365 (49%), Gaps = 27/365 (7%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIY 288
           G+ LH  +++   +D +  VAN+L+  YS CG++  A+  FD +  + D++SW ++ S  
Sbjct: 67  GRALHRRLLRGDLLDRDAVVANSLLTLYSRCGAVASARNVFDGMRGLRDIVSWTAMASCL 126

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY--FGKQIHGYVTKLGFDH 346
           A      ++L L   M      P+  +     + A     +Y   G  + G V K+G   
Sbjct: 127 ARNGAERESLLLIGEMLESGLLPNAYTLCAVAH-ACFPHELYCLVGGVVLGLVHKMGLWG 185

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             + V SAL DM  +   + S+  VF+    +++     L++  +     ++AVE+F   
Sbjct: 186 TDIAVGSALIDMLARNGDLASARKVFDGLIEKTVVVWTLLISRYVQGECAEEAVEIFLDF 245

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYS 463
           +++G   D  T+S+      +SA   LGS RL   LH  A++ GF S+  VSC L+D Y+
Sbjct: 246 LEDGFEPDRYTMSSM-----ISACTELGSVRLGLQLHSLALRMGFASDACVSCGLVDMYA 300

Query: 464 RCG---HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR-EALDMLEVMIQRGLIPDKV 519
           +      ++ +++VFE++   +V+ +T++++GY ++G+   + + +   M+   + P+ +
Sbjct: 301 KSNIEQAMDYANKVFERMRKNDVISWTALISGYVQSGVQENKVMVLFGEMLNESIKPNHI 360

Query: 520 TFLCVLAGC-----NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           T+  +L  C     + SG      ++ ++  + + +       + ++ M   +G +++A 
Sbjct: 361 TYSSILKACANISDHDSGRQVHAHVIKSNQAAAHTVG------NALVSMYAESGCMEEAR 414

Query: 575 ELLQQ 579
            +  Q
Sbjct: 415 RVFNQ 419



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 43/144 (29%), Positives = 79/144 (54%), Gaps = 4/144 (2%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           + SN  +  + + G+L  A + F+E+  R+++++  +ISG  K  + ++AL L+ +M+  
Sbjct: 486 FVSNSLVSMYSRCGYLEDACRSFNELKDRNVISWTSMISGLAKHGYAERALSLFHDMILT 545

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSV 162
           G+K +  T+ +VLS CS+ G   EG + + R +    GL   +   + +VDL  R G   
Sbjct: 546 GVKPNDVTYIAVLSACSHVGLVREGKE-YFRSMQRDHGLIPRMEHYACMVDLLARSGLVK 604

Query: 163 RALDLFDELPERNLA-TWNLMLRA 185
            AL+  +E+P +  A  W  +L A
Sbjct: 605 EALEFINEMPLKADALVWKTLLGA 628


>gi|302763107|ref|XP_002964975.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
 gi|300167208|gb|EFJ33813.1| hypothetical protein SELMODRAFT_30550 [Selaginella moellendorffii]
          Length = 703

 Score =  268 bits (685), Expect = 7e-69,   Method: Compositional matrix adjust.
 Identities = 186/634 (29%), Positives = 325/634 (51%), Gaps = 15/634 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M S  + P   T++++   C+S+  L     + S         +I   N  +  + +   
Sbjct: 78  MDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLSSSIIVQNALVSMYARCSR 137

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ A+ +FD++ ++ +V++N +I+ C +    +QAL L+  M    ++ +  TF+SV + 
Sbjct: 138 LDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRM---ELEPNEVTFASVFNA 194

Query: 120 CSNAGFYTE-GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           CS    + E G +IH R+       N+ + + +V +Y + G    A  +F+ +  +N+ +
Sbjct: 195 CSLLPDHREVGKRIHDRIRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVS 254

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN ML A+ + +   E L +Y++M A+ V+ + ++    +   +   LL  G +LH   +
Sbjct: 255 WNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSV 314

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
             G+ D NI V NAL+  Y  C  L  A++ F  +   DV+SW +++  Y  +    +AL
Sbjct: 315 AHGY-DSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREAL 373

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSVHVQSALT 356
           EL+ +M+     P   +F   L+  S T ++  G+ +H  +   K GF  G +   +AL 
Sbjct: 374 ELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLLARKDGFSDGVL--VAALI 431

Query: 357 DMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
           +MY KC  ++ S  +F+S    +++   N+++T+    G  + AV+++  M   G+  DE
Sbjct: 432 NMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDE 491

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSRCGHIELSHQV 474
            TLS+ L A   +   +L     LH   I S     N  V  +L+  Y+ CG I  +  V
Sbjct: 492 STLSSILSA--CAELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAV 549

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F+++ + +VV +T +++ Y + G  R AL +   M+  G+ P + TFLCV   C H+G+V
Sbjct: 550 FKRMKNRDVVSWTILISAYVQGGDARRALRLYRRMLVEGVQPTEPTFLCVFLACGHAGLV 609

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            E +  F SM     I     HYSC++ +L RAG L++AE+LL   P     + W+SLL 
Sbjct: 610 DECKWYFQSMIEDR-ITPTFDHYSCVVTVLSRAGKLEEAEDLLHSMPFNPGSVGWTSLLG 668

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
           +CR HG+    RR A+  MEL+  D A Y  +SN
Sbjct: 669 ACRTHGDLKRARRAADEAMELDRQDSAPYVLLSN 702



 Score =  238 bits (608), Expect = 6e-60,   Method: Compositional matrix adjust.
 Identities = 149/553 (26%), Positives = 290/553 (52%), Gaps = 14/553 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G ++ A ++F  +P R + ++N +I+   K RH ++A+ ++  M S GIK  ++T 
Sbjct: 31  YGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFAKNRHGRKAIEMFRSMDSAGIKPDSATL 90

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           SSVL  CS+     EG +IH R L+ G   ++ + + LV +Y R      A  +FD++  
Sbjct: 91  SSVLGACSSLRDLEEGKKIHSRALARGLSSSIIVQNALVSMYARCSRLDVARVVFDKIES 150

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE---G 230
           +++ +WN M+ A       ++ L+++ +M+   +EPN ++F  +   CS  +L D    G
Sbjct: 151 KSVVSWNAMIAACARQGEAEQALQLFKRME---LEPNEVTFASVFNACS--LLPDHREVG 205

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K++H   I+   ++ N+ VA A+V  Y   G +  A++ F+ I   +V+SWN+++  Y  
Sbjct: 206 KRIHDR-IRGSHLEANVTVATAIVTMYGKFGKVGMARQVFNGIQHKNVVSWNAMLGAYTQ 264

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
            +L  +ALE++  M   + +    + V  L  ++    +  G ++H      G+D  ++ 
Sbjct: 265 NNLDREALEVYHEMVAQKVQRDEVTVVIALGISASLRLLKLGIELHELSVAHGYD-SNIK 323

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           VQ+AL  MYGKCN ++++  VF       +    +L+ +    G  ++A+E++  M  EG
Sbjct: 324 VQNALISMYGKCNELDAARRVFSKVRAHDVVSWTALIVAYTQHGRNREALELYKQMEGEG 383

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
           +  D+VT ++ L A S ++   LG        A K GF   + V+ +L++ Y +CG ++L
Sbjct: 384 MEPDKVTFTSVLSACSNTSDLELGQALHARLLARKDGFSDGVLVA-ALINMYVKCGRLDL 442

Query: 471 SHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           S ++F+    +  VV + +++  Y + G  R A+D+ ++M QRGL PD+ T   +L+ C 
Sbjct: 443 SSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAAVDLYDMMKQRGLDPDESTLSSILSACA 502

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
               +++G+ +   + +      +    + +I M    G + +A+ + ++     D + W
Sbjct: 503 ELQDLEKGEQLHVEIIASRDCSQNPVVLNALISMYASCGEIREAKAVFKRMK-NRDVVSW 561

Query: 590 SSLLRSCRVHGNE 602
           + L+ S  V G +
Sbjct: 562 TILI-SAYVQGGD 573



 Score =  214 bits (546), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 144/541 (26%), Positives = 284/541 (52%), Gaps = 16/541 (2%)

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
           +G +IH  +++ G   + ++G  L+ +Y + G    A+ +F  LP R+L +WN ++ AF 
Sbjct: 4   QGRRIHAHIVASGLASDGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIAAFA 63

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +     + + M+  M + G++P+  +   ++  CS    L+EGK++HS  +  G +  +I
Sbjct: 64  KNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARG-LSSSI 122

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            V NALV  Y+ C  L  A+  FD I    V+SWN++++  A       AL+LF RM+L 
Sbjct: 123 IVQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRMEL- 181

Query: 308 RKRPSIRSFVEFLNFAS-RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              P+  +F    N  S    +   GK+IH  +     +  +V V +A+  MYGK   + 
Sbjct: 182 --EPNEVTFASVFNACSLLPDHREVGKRIHDRIRGSHLE-ANVTVATAIVTMYGKFGKVG 238

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  VF     +++   N+++ +   +   ++A+E++  MV + +  DEVT+   + AL 
Sbjct: 239 MARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTV---VIALG 295

Query: 427 VSASANLGSCRL-LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +SAS  L    + LH  ++  G++SNI V  +L+  Y +C  ++ + +VF K+ + +VV 
Sbjct: 296 ISASLRLLKLGIELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSKVRAHDVVS 355

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +T+++  Y+++G  REAL++ + M   G+ PDKVTF  VL+ C+++  ++ GQ +   + 
Sbjct: 356 WTALIVAYTQHGRNREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQALHARLL 415

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           +     +D    + +I+M  + G LD + E+ Q        ++W++++ +    G     
Sbjct: 416 ARKDGFSDGVLVAALINMYVKCGRLDLSSEIFQSCKDTKAVVVWNAMITAYEQEGYSRAA 475

Query: 606 RRVANILME--LEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             + +++ +  L+P D +  S + +  +E+ + E   Q+    +A   +RD   + + +N
Sbjct: 476 VDLYDMMKQRGLDP-DESTLSSILSACAELQDLEKGEQLHVEIIA---SRDCSQNPVVLN 531

Query: 664 S 664
           +
Sbjct: 532 A 532



 Score =  144 bits (363), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 104/428 (24%), Positives = 205/428 (47%), Gaps = 15/428 (3%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L +G+++H+H++  G    + F+ + L+  Y  CGS+ +A + F  +P   + SWN I++
Sbjct: 2   LPQGRRIHAHIVASGLAS-DGFLGDHLLQMYGKCGSVDDAIQVFHSLPRRSLFSWNFIIA 60

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            +A       A+E+F  M     +P   +    L   S   ++  GK+IH      G   
Sbjct: 61  AFAKNRHGRKAIEMFRSMDSAGIKPDSATLSSVLGACSSLRDLEEGKKIHSRALARGLS- 119

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            S+ VQ+AL  MY +C+ ++ +  VF+    +S+   N+++ +    G  + A+++F  M
Sbjct: 120 SSIIVQNALVSMYARCSRLDVARVVFDKIESKSVVSWNAMIAACARQGEAEQALQLFKRM 179

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             E    +EVT ++   A S+         R +H     S  E+N+ V+ +++  Y + G
Sbjct: 180 ELEP---NEVTFASVFNACSLLPDHREVGKR-IHDRIRGSHLEANVTVATAIVTMYGKFG 235

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            + ++ QVF  I   NVV + +++  Y++N + REAL++   M+ + +  D+VT +  L 
Sbjct: 236 KVGMARQVFNGIQHKNVVSWNAMLGAYTQNNLDREALEVYHEMVAQKVQRDEVTVVIALG 295

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
                 ++K G +  + +   +G D++ +  + +I M G+   LD A  +  +     D 
Sbjct: 296 ISASLRLLKLG-IELHELSVAHGYDSNIKVQNALISMYGKCNELDAARRVFSKVR-AHDV 353

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELE----PVDFAVYSQVSNFYSEIGEFEVSMQI 642
           + W++L+ +   HG     R    +  ++E      D   ++ V +  S   + E+   +
Sbjct: 354 VSWTALIVAYTQHGR---NREALELYKQMEGEGMEPDKVTFTSVLSACSNTSDLELGQAL 410

Query: 643 RETALARK 650
               LARK
Sbjct: 411 HARLLARK 418


>gi|28564593|dbj|BAC57760.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50509708|dbj|BAD31746.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 703

 Score =  268 bits (684), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 181/571 (31%), Positives = 284/571 (49%), Gaps = 62/571 (10%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMR---MGPSVRALDLFDELPERNLATWNLMLRA 185
           G+Q+H   LSLG   +  +   L+ +Y     + PS  ++     LP      +N+++ +
Sbjct: 92  GVQLHALSLSLGLSRHPILLPRLLSVYTSHPSLLPSAASVAADSTLP----LPYNVLISS 147

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
                 P + L  Y +M   GV P+  ++  ++R C+    L  G+ +H H    G +D 
Sbjct: 148 CLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAG-MDG 206

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM- 304
           N+F  NAL+  Y+ CG L  A+K FD +   DV+SWNS++S YA      +A+ELF RM 
Sbjct: 207 NLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMR 266

Query: 305 -------------------QLCRKRPSIRSFVEF---------------LNFASRTGNVY 330
                              Q+   R ++    E                LN  SR G + 
Sbjct: 267 DEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLR 326

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC-----CNS 385
            GK+IHG   ++  D     V +AL  MY +C  +E +  +F     R LEC      N+
Sbjct: 327 LGKEIHGLAVRMCCDQVE-SVSNALITMYARCKDMECARMLF-----RMLECPGVVTWNT 380

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++S   S   ++A  +F  M+  G+  + VT+ T L     +  ANL   + LH   +K
Sbjct: 381 MLSSFALSDCAEEASSIFREMICRGVKPNYVTVVTYLAL--CARVANLQHGQELHGHIVK 438

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            GF+    +  SL+D YS+ G + ++  VF+ +   +++ +TS++ GY   G G  AL +
Sbjct: 439 HGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRL 498

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            E MI  G+ PD +  + VL+ C+HSG+V EG+ +FN M   YGI    +HYSCMID+  
Sbjct: 499 FEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEHYSCMIDLYA 558

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           RAG+L+KAEE+L  TP      MW++L+ +C   GN  IG R A  L+E+   +   Y  
Sbjct: 559 RAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDRGNIEIGERAARKLLEMRTENAGHYVL 618

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           ++N Y+  G ++      E A  RKL RD+G
Sbjct: 619 IANMYAAAGCWD------ELATVRKLMRDLG 643



 Score =  160 bits (404), Expect = 3e-36,   Method: Compositional matrix adjust.
 Identities = 115/442 (26%), Positives = 204/442 (46%), Gaps = 40/442 (9%)

Query: 76  VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
           + YN+LIS C +   P QAL  Y EM  +G+     T+ SVL  C+ A     G  +H  
Sbjct: 139 LPYNVLISSCLRHGLPLQALAAYQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMH 198

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
               G   NL+  + L+ +Y + G    A  +FD + +R++ +WN M+ ++  + +  E 
Sbjct: 199 AAGAGMDGNLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEA 258

Query: 196 LRMYNKMKAEGVEPNGLSFCY--------------------MVRG--------------- 220
           + ++ +M+ EG E N +++                      MVRG               
Sbjct: 259 MELFRRMRDEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNA 318

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           CS    L  GK++H   +++    V   V+NAL+  Y+ C  +  A+  F  +    V++
Sbjct: 319 CSRVGWLRLGKEIHGLAVRMCCDQVE-SVSNALITMYARCKDMECARMLFRMLECPGVVT 377

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           WN+++S +A  D   +A  + FR  +CR  +P+  + V +L   +R  N+  G+++HG++
Sbjct: 378 WNTMLSSFALSDCAEEASSI-FREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHI 436

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GF  G   + ++L DMY K   +  +  VF++     +    S++      G    A
Sbjct: 437 VKHGFK-GYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVA 495

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  M+D GI  D + + T L A S S     G   L +   I  G +  +     ++
Sbjct: 496 LRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGE-ELFNKMVISYGIKPQMEHYSCMI 554

Query: 460 DAYSRCGHIELSHQVFEKIPSP 481
           D Y+R G +E + ++ +  P P
Sbjct: 555 DLYARAGLLEKAEEMLDHTPFP 576



 Score =  108 bits (271), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 92/374 (24%), Positives = 161/374 (43%), Gaps = 46/374 (12%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  N  +  + K G L SA+K+FD M  RD+V++N +IS         +A+ L+  M 
Sbjct: 207 NLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMR 266

Query: 103 SHGIKESASTFSSV-----------------------------------LSVCSNAGFYT 127
             G + ++ T++++                                   L+ CS  G+  
Sbjct: 267 DEGTEVNSVTWNTIAGGYIQMRDYRAAVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLR 326

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            G +IH   + +       + + L+ +Y R      A  LF  L    + TWN ML +F 
Sbjct: 327 LGKEIHGLAVRMCCDQVESVSNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFA 386

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                +E   ++ +M   GV+PN ++    +  C+    L  G++LH H++K G+    +
Sbjct: 387 LSDCAEEASSIFREMICRGVKPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRL 446

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
              N+L+D YS  G L  A+  FD +   D+IS+ S+++ Y        AL LF +M   
Sbjct: 447 LW-NSLIDMYSKSGRLSVAQNVFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDS 505

Query: 308 RKRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
             +P     V  L+  S +G V      F K +  Y  K   +H      S + D+Y + 
Sbjct: 506 GIKPDHIIMVTVLSACSHSGLVLEGEELFNKMVISYGIKPQMEH-----YSCMIDLYARA 560

Query: 363 NVIESSVAVFESAP 376
            ++E +  + +  P
Sbjct: 561 GLLEKAEEMLDHTP 574



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 50/240 (20%), Positives = 117/240 (48%), Gaps = 1/240 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  I  + +   +  A+ LF  +    +VT+N ++S        ++A  ++ EM+  G+
Sbjct: 347 SNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGV 406

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K +  T  + L++C+       G ++H  ++  GF     + + L+D+Y + G    A +
Sbjct: 407 KPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQN 466

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD + + ++ ++  M+  +    +    LR++ +M   G++P+ +    ++  CS   L
Sbjct: 467 VFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGL 526

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIV 285
           + EG++L + ++    +   +   + ++D Y+  G L +A++  D  P     + W ++V
Sbjct: 527 VLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALV 586


>gi|357484133|ref|XP_003612353.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513688|gb|AES95311.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 795

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 177/614 (28%), Positives = 321/614 (52%), Gaps = 20/614 (3%)

Query: 54  FVKSGH-LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESAS 111
           ++K G  L  A ++F  +  RD+V +N++ISG  +    +    L+ EM    G+K    
Sbjct: 194 YLKGGDDLRDALRVFYGLLERDVVAWNVMISGFAQNGDFRMVQRLFSEMWEEQGLKPDRI 253

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TF+S+L  CS      E +QIH  V   G  +++ + S +VDLY +         +FD +
Sbjct: 254 TFASLLKCCS---VLNEVMQIHGIVYKFGAEVDVVVESAMVDLYAKCRDVSSCRKIFDSM 310

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
            +++   W+ M+  +   +R +E +  +  M  + V+ +       ++ C     L+ G 
Sbjct: 311 EKKDNFVWSSMISGYTMNNRGEEAVNFFKDMCRQRVKLDQHVLSSTLKACVEIEDLNTGV 370

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           Q+H  +IK G  + + FVA+ L++ Y++ G L + +K F  I   D+++WNS++   A  
Sbjct: 371 QVHGLMIKNGHQN-DCFVASVLLNLYASFGELGDVEKLFSRIDDKDIVAWNSMILAQARP 429

Query: 292 DL-IFDALELFFRMQLCRKRPSIR----SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
                  ++LF   Q  R+   ++    + V  L    +  ++  G+QIH  + K     
Sbjct: 430 GQGCGRCMQLF---QELRRTTFLQIQGATLVAVLKSCEKDSDLPAGRQIHSLIVKSSLCR 486

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            ++ V +AL  MY +C  I+ +   F     +     +S++ +   +     A+E+   M
Sbjct: 487 HTL-VGNALVHMYSECKQIDDAFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALELCKEM 545

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           +DEGI     +L   + A S   + + G  + LH  AIKSG+  ++ +  S++D Y++CG
Sbjct: 546 LDEGINFTSYSLPLCISACSQLLTISEG--KQLHVFAIKSGYSCDVYIGSSIIDMYAKCG 603

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           +IE S +VF++   PN V F +I++GY+ +G  ++A+++L  + + G+ P+ VTFL +++
Sbjct: 604 NIEESEKVFDEQLKPNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLALMS 663

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H+G V+E   +F  M   Y I    +HYSC++D  GRAG L++A +++Q+    G  
Sbjct: 664 ACSHAGYVEETSHLFTLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEAYQIVQKD---GSE 720

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
             W +LL +CR H N  IG + A  ++EL P D A Y  +SN Y E G +E ++  R+  
Sbjct: 721 SAWRTLLSACRNHSNRKIGEKSAMKMIELNPSDHAPYILLSNIYIEEGNWEEALNCRKKM 780

Query: 647 LARKLTRDIGHSLI 660
              ++ +D G+S +
Sbjct: 781 AKIRVKKDPGNSWL 794



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 150/580 (25%), Positives = 283/580 (48%), Gaps = 29/580 (5%)

Query: 16  LAPTCTSIVPLSSSLLLDSYCQPNPQLNI-------YSSNRTIDDFVKSGHLNSAKKLFD 68
           L P   S+   S+ ++L    Q + QL I       + +N  +  + KS + + A KLFD
Sbjct: 48  LEPFLLSLAKKSNPIILTQCNQIHAQLIITQYISQTHLANTLLSFYSKSSNFHYAHKLFD 107

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           +MP R++VT+  LIS   K+    +A  +++ M     + + +TF+ +L  C+N   ++ 
Sbjct: 108 KMPNRNVVTWTTLISSHLKYGSVSKAFEMFNHMRVSDERPNENTFAVLLRACTNRELWSV 167

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR-ALDLFDELPERNLATWNLMLRAFC 187
           G+QIH  ++  G     + GS LV +Y++ G  +R AL +F  L ER++  WN+M+  F 
Sbjct: 168 GLQIHGLLVRCGLEREKFAGSSLVYMYLKGGDDLRDALRVFYGLLERDVVAWNVMISGFA 227

Query: 188 ELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
           +      V R++++M + +G++P+ ++F  +++ CS+   L+E  Q+H  V K G  +V+
Sbjct: 228 QNGDFRMVQRLFSEMWEEQGLKPDRITFASLLKCCSV---LNEVMQIHGIVYKFG-AEVD 283

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + V +A+VD Y+ C  +   +K FD +   D   W+S++S Y   +   +A+  F  M  
Sbjct: 284 VVVESAMVDLYAKCRDVSSCRKIFDSMEKKDNFVWSSMISGYTMNNRGEEAVNFFKDM-- 341

Query: 307 CRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           CR+R  +   V    L       ++  G Q+HG + K G       V S L ++Y     
Sbjct: 342 CRQRVKLDQHVLSSTLKACVEIEDLNTGVQVHGLMIKNGH-QNDCFVASVLLNLYASFGE 400

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGN-IKDAVEMFGFMVDEG-IGLDEVTLSTTL 422
           +     +F     + +   NS++ +    G      +++F  +     + +   TL   L
Sbjct: 401 LGDVEKLFSRIDDKDIVAWNSMILAQARPGQGCGRCMQLFQELRRTTFLQIQGATLVAVL 460

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           K  S    ++L + R +H   +KS    +  V  +L+  YS C  I+ + + F  I   +
Sbjct: 461 K--SCEKDSDLPAGRQIHSLIVKSSLCRHTLVGNALVHMYSECKQIDDAFKAFVDIVRKD 518

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVF 541
              ++SI+    +N M  +AL++ + M+  G+     +    ++ C+    + EG QL  
Sbjct: 519 DSSWSSIIGTCKQNRMESKALELCKEMLDEGINFTSYSLPLCISACSQLLTISEGKQLHV 578

Query: 542 NSMKSVYGIDADRQHY--SCMIDMLGRAGILDKAEELLQQ 579
            ++KS Y  D     Y  S +IDM  + G ++++E++  +
Sbjct: 579 FAIKSGYSCDV----YIGSSIIDMYAKCGNIEESEKVFDE 614



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 63/249 (25%), Positives = 121/249 (48%), Gaps = 13/249 (5%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N  +++YS  + IDD         A K F ++  +D  +++ +I  C + R   +AL L 
Sbjct: 492 NALVHMYSECKQIDD---------AFKAFVDIVRKDDSSWSSIIGTCKQNRMESKALELC 542

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            EM+  GI  ++ +    +S CS     +EG Q+H   +  G+  ++YIGS ++D+Y + 
Sbjct: 543 KEMLDEGINFTSYSLPLCISACSQLLTISEGKQLHVFAIKSGYSCDVYIGSSIIDMYAKC 602

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    +  +FDE  + N  T+N ++  +    +  + + + +K++  GV PN ++F  ++
Sbjct: 603 GNIEESEKVFDEQLKPNEVTFNAIISGYAHHGKAQQAIEVLSKLEKNGVAPNHVTFLALM 662

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             CS    ++E   L + ++    +       + LVD Y   G L EA   +  +  D  
Sbjct: 663 SACSHAGYVEETSHLFTLMLDKYKIKPKSEHYSCLVDAYGRAGRLEEA---YQIVQKDGS 719

Query: 279 IS-WNSIVS 286
            S W +++S
Sbjct: 720 ESAWRTLLS 728


>gi|414867973|tpg|DAA46530.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 923

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 163/593 (27%), Positives = 308/593 (51%), Gaps = 18/593 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  F     +  A++LFD M  RD +++N +IS         +   +  +M    +
Sbjct: 183 ANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEV 242

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K   +T  S++SVC+++     G  IH   +S G   ++ + + LV++Y   G    A  
Sbjct: 243 KPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAES 302

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGM 225
           LF  +  R++ +WN M+ ++ + +   E L    ++ + +   PN ++F   +  CS   
Sbjct: 303 LFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPE 362

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L  G+ +H+ +++    +V + + N+L+  YS C S+ + ++ F+ +P  DV+S N + 
Sbjct: 363 ALMNGRTIHAMILQRSLQNV-LLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLT 421

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY-FGKQIHGYVTKLGF 344
             YA  + + +A+ +F  M+    +P+  + +         G+++ +G  +H YVT+ G 
Sbjct: 422 GGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGL 481

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
                ++ ++L  MY  C  +ESS  +F     +S+   N+++ + +  G  ++A+++F 
Sbjct: 482 -LSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFM 540

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDA 461
                G  LD   L+  L     S+SANL S      LH  ++K+G + +  V  + MD 
Sbjct: 541 DSQHAGNKLDRFCLAECL-----SSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDM 595

Query: 462 YSRCGHIELSHQVFEKIPSPN---VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           Y +CG ++    + + +P P      C+ ++++GY+R G  +EA D  + M+  G  PD 
Sbjct: 596 YGKCGKMDC---MLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDY 652

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ +L+ C+H+G++ +G   +NSM   +G+    +H  C++D+LGR G   +AE+ + 
Sbjct: 653 VTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFID 712

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           + P   + ++W SLL S R H N  IGR+ A  L+EL+P D + Y  +SN Y+
Sbjct: 713 EMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYA 765



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/556 (25%), Positives = 265/556 (47%), Gaps = 14/556 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y     +  +   G + +A++LF EMP R++V++  ++         ++AL  Y  M 
Sbjct: 78  NVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMR 137

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +A+  ++V+S+C        G+Q+   V+  G   ++ + + L+ ++  +    
Sbjct: 138 KEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQ 197

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD + ER+  +WN M+  +       +   + + M+   V+P+  + C +V  C+
Sbjct: 198 DAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCA 257

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              L+  G  +HS  +  G +  ++ + NALV+ YS  G L EA+  F  +   DVISWN
Sbjct: 258 SSDLVALGSGIHSLCVSSG-LHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWN 316

Query: 283 SIVSIYADYDLIFDALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +++S Y   +   +ALE   + +Q     P+  +F   L   S    +  G+ IH  + +
Sbjct: 317 TMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQ 376

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
               +  + + ++L  MY KCN +E +  VFES P   +  CN L        ++ +A+ 
Sbjct: 377 RSLQN-VLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMR 435

Query: 402 MFGFMVDEGIGLDEVT---LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           +F +M   GI  + +T   L  T K+L    S  +     LH    ++G  S+  ++ SL
Sbjct: 436 VFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMP----LHAYVTQTGLLSDEYITNSL 491

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y+ CG +E S  +F +I + +V+ + +I+    R+G G EA+ +       G   D+
Sbjct: 492 ITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDR 551

Query: 519 VTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
                 L+   +   ++EG QL   S+K+  G+D D    +  +DM G+ G +D   + L
Sbjct: 552 FCLAECLSSSANLASLEEGMQLHGLSVKN--GLDCDSHVVNATMDMYGKCGKMDCMLKTL 609

Query: 578 QQTPGGGDCMMWSSLL 593
              P       W++L+
Sbjct: 610 PD-PAHRPTQCWNTLI 624



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/538 (24%), Positives = 251/538 (46%), Gaps = 15/538 (2%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE- 128
           MP R   ++   +SGC +      A  L   M    +  S    +S+++ C + G+    
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 129 --GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  IH      G   N+YIG+ L+ LY   G  + A  LF E+P+RN+ +W  ++ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWVD 244
                 +E L  Y +M+ EGV  N  +   +V  C  G L DE  G Q+ +HV+  G + 
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLC--GALEDEVAGLQVTAHVVVSGLL- 177

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++ VAN+L+  +     + +A++ FD +   D ISWN+++S+Y+  ++      +   M
Sbjct: 178 THVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDM 237

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +    +P + +    ++  + +  V  G  IH      G  H SV + +AL +MY     
Sbjct: 238 RHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGL-HCSVPLINALVNMYSTAGK 296

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG--FMVDEGIGLDEVTLSTTL 422
           ++ + ++F +   R +   N++++S + S +  +A+E  G     DEG   + +T S+ L
Sbjct: 297 LDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPP-NSMTFSSAL 355

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A   S+   L + R +H   ++   ++ + +  SL+  YS+C  +E + +VFE +P  +
Sbjct: 356 GA--CSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYD 413

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           VV    +  GY+       A+ +   M   G+ P+ +T + +   C   G +    +  +
Sbjct: 414 VVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLH 473

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +  +  G+ +D    + +I M    G L+ +  +  +       + W++++ +   HG
Sbjct: 474 AYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRI-NNKSVISWNAIIAANVRHG 530



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 5/290 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSS-SLLLDSYCQPNPQL-NIYSSNRTIDDFVKSG 58
           M  T + P   T+  L  TC S+  L S  + L +Y      L + Y +N  I  +   G
Sbjct: 440 MRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCG 499

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            L S+  +F  +  + ++++N +I+   +    ++A+ L+ +    G K      +  LS
Sbjct: 500 DLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLS 559

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
             +N     EG+Q+H   +  G   + ++ +  +D+Y + G     L    +   R    
Sbjct: 560 SSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQC 619

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN ++  +       E    +  M + G +P+ ++F  ++  CS   L+D+G   ++ + 
Sbjct: 620 WNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMA 679

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DDVISWNSIVS 286
               V   I     +VD     G   EA+K  D +PV  +D+I W S++S
Sbjct: 680 PTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLI-WRSLLS 728


>gi|326509211|dbj|BAJ91522.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 878

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 191/627 (30%), Positives = 318/627 (50%), Gaps = 41/627 (6%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-TFSSVLSVCSN---AGFYTE 128
           RD V+YN LIS    FR  ++AL    +M++ G  + +S T  SVL  CS+         
Sbjct: 131 RDAVSYNSLISALCLFRQWERALDALRDMLAEGRHDVSSFTLVSVLLACSHLPGDDGRRL 190

Query: 129 GIQIHCRVLSLGF---GLNLYIGSPLVDLYMRMGPSVRALDLFDELPER------NLATW 179
           G + H   L  GF   G   +  + L+ +Y R+G    A  LF            ++ TW
Sbjct: 191 GREAHAFALKRGFLDEGRERFPFNALLSMYARLGLVDDAQSLFRTTAAAFSPGGGDVVTW 250

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+    +  R  E + +   M + GV P+G++F   +  CS   +L  G+++H+ V+K
Sbjct: 251 NTMISLLVQGGRCAEAVEVLYDMVSLGVRPDGVTFASALPACSRLEMLALGREMHAVVLK 310

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI--PVDDVISWNSIVSIYADYDLIFDA 297
              +  N FVA+ALVD Y+    +  A++ FD +  P   +  WN+++  YA   +  +A
Sbjct: 311 DADLAANSFVASALVDMYAGNEKVASARRVFDMVPEPSRQLGMWNAMICGYAQAGMDEEA 370

Query: 298 LELFFRMQL---CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
           LELF RM+    C   PS  +    L   +R+      + +HGYV K G   G+  VQ+A
Sbjct: 371 LELFSRMEAEAGC--APSETTMSGVLPACARSEGFAGKEAMHGYVVKRGMA-GNRFVQNA 427

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM-------- 406
           L DMY +   ++ +  +F     R +   N+L+T  +  G+  +A ++   M        
Sbjct: 428 LMDMYARLGEMDVARRIFAMIDPRDVVSWNTLITGCVVQGHAAEAFQLVTEMQLPSPSPS 487

Query: 407 ----VDEGIG----LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
                +EG       + +TL T L   +  A+   G  + +H  A++   ES+IAV  +L
Sbjct: 488 SSSTTEEGEAHRCMPNNITLMTLLPGCAALAAPARG--KEIHGYAVRHALESDIAVGSAL 545

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIPD 517
           +D Y++CG +  S  VF+++P  NV+ +  ++  Y  +G+G EA+ + + M   G   P+
Sbjct: 546 VDMYAKCGCLAASRAVFDRLPRRNVITWNVLIMAYGMHGLGDEAVALFDEMAAGGEATPN 605

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           +VTF+  LA C+HSG+V  G  +F+ M+  +G+      ++C++D+LGRAG LD+A  ++
Sbjct: 606 EVTFIAALAACSHSGLVDRGLELFHGMERDHGVKPTPDLHACVVDVLGRAGRLDEAYSII 665

Query: 578 QQ-TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
               PG      WSSLL +CR+H N  +G   A  L ELEP + + Y  + N YS  G +
Sbjct: 666 TSMEPGEQQVSAWSSLLGACRLHRNVELGEVAAERLFELEPGEASHYVLLCNIYSAAGMW 725

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
           + S+ +R     + + ++ G S IE++
Sbjct: 726 DKSVAVRVRMRRQGVAKEPGCSWIELD 752


>gi|297740109|emb|CBI30291.3| unnamed protein product [Vitis vinifera]
          Length = 616

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 154/497 (30%), Positives = 266/497 (53%), Gaps = 13/497 (2%)

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P+RNL +W  M+    + S+  E +R +  M+  G  P   +F   +R C+    ++ G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+H   +K G +   +FV + L D YS CG++ +A K F+ +P  D +SW +++  Y+ 
Sbjct: 61  KQMHCLALKFG-IGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSK 119

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +AL  F +M               L          FG+ +H  V KLGF+   + 
Sbjct: 120 IGEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGFE-SDIF 178

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCN-----SLMTSLLHSGNIKDAVEMFGF 405
           V +ALTDMY K   +ES+  VF    G   EC N      L+   + +  I+  + +F  
Sbjct: 179 VGNALTDMYSKAGDMESASNVF----GIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVE 234

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           +  +GI  +E T S+ +KA +  A+   G+   LH   +K  F+ +  VS  L+D Y +C
Sbjct: 235 LRRQGIEPNEFTFSSLIKACANQAALEQGT--QLHAQVMKINFDEDPFVSSILVDMYGKC 292

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G +E + Q F++I  P  + + S+++ + ++G+G++A+ + E M+ RG+ P+ +TF+ +L
Sbjct: 293 GLLEQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLL 352

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
            GC+H+G+V+EG   F SM   YG+    +HYSC+ID+LGRAG L +A+E + + P   +
Sbjct: 353 TGCSHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPN 412

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
              W S L +CR+HG++ +G+  A  L++LEP +      +SN Y+   ++E    +R  
Sbjct: 413 AFGWCSFLGACRIHGDKEMGKLAAEKLVKLEPKNSGALVLLSNIYANERQWEDVRSVRMR 472

Query: 646 ALARKLTRDIGHSLIEV 662
                + +  G+S ++V
Sbjct: 473 MRDGNVKKLPGYSWVDV 489



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 118/442 (26%), Positives = 203/442 (45%), Gaps = 8/442 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           MP R++V++  +ISG  +     +A+  +  M   G   +   FSS +  C++ G    G
Sbjct: 1   MPQRNLVSWTAMISGLSQNSKFSEAIRTFCGMRICGEVPTQFAFSSAIRACASLGSIEMG 60

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            Q+HC  L  G G  L++GS L D+Y + G    A  +F+E+P ++  +W  M+  + ++
Sbjct: 61  KQMHCLALKFGIGSELFVGSNLEDMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKI 120

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
              +E L  + KM  E V  +    C  +  C        G+ +HS V+KLG+ + +IFV
Sbjct: 121 GEFEEALLAFKKMIDEEVTIDQHVLCSTLGACGALKACKFGRSVHSSVVKLGF-ESDIFV 179

Query: 250 ANALVDFYSACGSLIEAKKSFDF-IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
            NAL D YS  G +  A   F       +V+S+  ++  Y + + I   L +F  ++   
Sbjct: 180 GNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQG 239

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
             P+  +F   +   +    +  G Q+H  V K+ FD     V S L DMYGKC ++E +
Sbjct: 240 IEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPF-VSSILVDMYGKCGLLEQA 298

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
           +  F+     +    NSL++     G  KDA+++F  MVD G+  + +T  + L   S +
Sbjct: 299 IQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHA 358

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFT 487
                G                    SC ++D   R G ++ + +   ++P  PN   + 
Sbjct: 359 GLVEEGLDYFYSMDKTYGVVPGEEHYSC-VIDLLGRAGRLKEAKEFINRMPFEPNAFGWC 417

Query: 488 SIMNGYSRNG---MGREALDML 506
           S +     +G   MG+ A + L
Sbjct: 418 SFLGACRIHGDKEMGKLAAEKL 439



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 169/331 (51%), Gaps = 12/331 (3%)

Query: 52  DDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           D + K G +  A K+F+EMP +D V++  +I G  K    ++AL  + +M+   +     
Sbjct: 84  DMYSKCGAMFDACKVFEEMPCKDEVSWTAMIDGYSKIGEFEEALLAFKKMIDEEVTIDQH 143

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
              S L  C        G  +H  V+ LGF  ++++G+ L D+Y + G    A ++F   
Sbjct: 144 VLCSTLGACGALKACKFGRSVHSSVVKLGFESDIFVGNALTDMYSKAGDMESASNVFGID 203

Query: 172 PE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            E RN+ ++  ++  + E  + ++ L ++ +++ +G+EPN  +F  +++ C+    L++G
Sbjct: 204 SECRNVVSYTCLIDGYVETEQIEKGLSVFVELRRQGIEPNEFTFSSLIKACANQAALEQG 263

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
            QLH+ V+K+ + D + FV++ LVD Y  CG L +A ++FD I     I+WNS+VS++  
Sbjct: 264 TQLHAQVMKINF-DEDPFVSSILVDMYGKCGLLEQAIQAFDEIGDPTEIAWNSLVSVFGQ 322

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFD 345
           + L  DA+++F RM     +P+  +F+  L   S  G V     YF      Y    G +
Sbjct: 323 HGLGKDAIKIFERMVDRGVKPNAITFISLLTGCSHAGLVEEGLDYFYSMDKTYGVVPGEE 382

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           H      S + D+ G+   ++ +       P
Sbjct: 383 H-----YSCVIDLLGRAGRLKEAKEFINRMP 408



 Score =  112 bits (280), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 69/268 (25%), Positives = 136/268 (50%), Gaps = 5/268 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFD-EMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +I+  N   D + K+G + SA  +F  +   R++V+Y  LI G  +    ++ L ++ E+
Sbjct: 176 DIFVGNALTDMYSKAGDMESASNVFGIDSECRNVVSYTCLIDGYVETEQIEKGLSVFVEL 235

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              GI+ +  TFSS++  C+N     +G Q+H +V+ + F  + ++ S LVD+Y + G  
Sbjct: 236 RRQGIEPNEFTFSSLIKACANQAALEQGTQLHAQVMKINFDEDPFVSSILVDMYGKCGLL 295

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            +A+  FDE+ +     WN ++  F +     + ++++ +M   GV+PN ++F  ++ GC
Sbjct: 296 EQAIQAFDEIGDPTEIAWNSLVSVFGQHGLGKDAIKIFERMVDRGVKPNAITFISLLTGC 355

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVIS 280
           S   L++EG      + K   V       + ++D     G L EAK+  + +P + +   
Sbjct: 356 SHAGLVEEGLDYFYSMDKTYGVVPGEEHYSCVIDLLGRAGRLKEAKEFINRMPFEPNAFG 415

Query: 281 WNSIVS---IYADYDLIFDALELFFRMQ 305
           W S +    I+ D ++   A E   +++
Sbjct: 416 WCSFLGACRIHGDKEMGKLAAEKLVKLE 443


>gi|224106537|ref|XP_002314200.1| predicted protein [Populus trichocarpa]
 gi|222850608|gb|EEE88155.1| predicted protein [Populus trichocarpa]
          Length = 805

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 171/621 (27%), Positives = 314/621 (50%), Gaps = 8/621 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N + S   +  + K G + +A+++F+ +   D+  +N +I G  +  +  +A+     M 
Sbjct: 189 NPFVSCSVLSFYAKLGDIGAAERVFESLEEVDVGCWNAMIGGYAQCGYGFEAIVTASLMR 248

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI     TF +V+  CS  G +  G QIH  ++     L+  + + L+D+Y + G   
Sbjct: 249 RKGIFMDKYTFINVIQGCSLLGDFNFGRQIHGLIIRSELELSAPVMNALMDMYFKNGGMK 308

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
             L +F ++ +R++ TWN +  +F +   P ++  +++      + PN ++F  + R C 
Sbjct: 309 SGLVVFKKMHDRDVVTWNTVFGSFSQHEDPKDIASLFHSFLLTSMRPNHITFSILFRECG 368

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
             + LD G Q     +  G  D    + +AL++ +S CG +  A   F     +++I WN
Sbjct: 369 KLLNLDLGLQFCCLALHFGLFD-EANITSALINMFSRCGKMEMAHLVFKSKVSENIIIWN 427

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            ++S Y       +AL+ F+ +       +  +F   L   SR+ N    +QIHG   K 
Sbjct: 428 ELISGYKLNCCDAEALKTFYDLLQLGVEANEYTFSNVLETCSRSENQLMNRQIHGVAFKS 487

Query: 343 GF-DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           GF  HG  +V S+L   Y KC +++ S+ VF       +    +++++ +H G   +A+ 
Sbjct: 488 GFASHG--YVCSSLIKGYIKCGLLDDSLKVFNMLDRPDMAAWGTMISAFVHQGWDCEAIR 545

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
               +++ G   DE  L + L   S +++      + +H   IK GFE ++ V+ +++DA
Sbjct: 546 SLNLLIEAGEKPDEFILGSILS--SCASTVAYCQTKSVHSLIIKLGFEGHVFVASAVLDA 603

Query: 462 YSRCGHIELSHQVF-EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           Y++CG I+ +   F +   S +VV + +++  Y+ +G   EALD  + M    L P + T
Sbjct: 604 YAKCGDIQSAKMAFNQSCKSSDVVIYNAMIIAYAHHGRVVEALDTYDKMKLANLQPSQAT 663

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ V+A C H G V++G  +F SM  +YG++     Y C++DM  R G L+ A+++++  
Sbjct: 664 FVSVIAACGHIGHVEKGCRLFKSM-DLYGMEPSPDIYGCLVDMFSRNGYLEDAKQIIESL 722

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P      +  SLL  CR++GN  +G   A  L++L P + A ++ +   YSE+G +E + 
Sbjct: 723 PYPAWPAILRSLLSGCRMYGNRELGEWAAKKLLQLVPHNDAAHALLFKVYSELGNWEDAA 782

Query: 641 QIRETALARKLTRDIGHSLIE 661
           ++R     R L +D GHS IE
Sbjct: 783 KMRREMAERGLRKDPGHSWIE 803



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 131/560 (23%), Positives = 266/560 (47%), Gaps = 8/560 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ SN  I  + K   L     +FD M  R++V++ L++ G  +    +  L ++ EM+
Sbjct: 87  DVFVSNNLIKFYAKGAVLRYGFNVFDGMLERNVVSWTLMVCGAIQCEEVELGLEVFLEMI 146

Query: 103 SHGIKESASTFSSVLSVCSNA-GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             G   +     SV+  C N+      G+ +HC  L +G   N ++   ++  Y ++G  
Sbjct: 147 RDGFVPNEFGLGSVMKACGNSVEGRVFGLCVHCFALKIGMERNPFVSCSVLSFYAKLGDI 206

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F+ L E ++  WN M+  + +     E +   + M+ +G+  +  +F  +++GC
Sbjct: 207 GAAERVFESLEEVDVGCWNAMIGGYAQCGYGFEAIVTASLMRRKGIFMDKYTFINVIQGC 266

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S+    + G+Q+H  +I+   ++++  V NAL+D Y   G +      F  +   DV++W
Sbjct: 267 SLLGDFNFGRQIHGLIIR-SELELSAPVMNALMDMYFKNGGMKSGLVVFKKMHDRDVVTW 325

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++   ++ ++   D   LF    L   RP+  +F        +  N+  G Q       
Sbjct: 326 NTVFGSFSQHEDPKDIASLFHSFLLTSMRPNHITFSILFRECGKLLNLDLGLQFCCLALH 385

Query: 342 LG-FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            G FD    ++ SAL +M+ +C  +E +  VF+S    ++   N L++    +    +A+
Sbjct: 386 FGLFDEA--NITSALINMFSRCGKMEMAHLVFKSKVSENIIIWNELISGYKLNCCDAEAL 443

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           + F  ++  G+  +E T S  L+  + S S N    R +H  A KSGF S+  V  SL+ 
Sbjct: 444 KTFYDLLQLGVEANEYTFSNVLE--TCSRSENQLMNRQIHGVAFKSGFASHGYVCSSLIK 501

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y +CG ++ S +VF  +  P++  + ++++ +   G   EA+  L ++I+ G  PD+  
Sbjct: 502 GYIKCGLLDDSLKVFNMLDRPDMAAWGTMISAFVHQGWDCEAIRSLNLLIEAGEKPDEFI 561

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
              +L+ C  +    + + V +S+    G +      S ++D   + G +  A+    Q+
Sbjct: 562 LGSILSSCASTVAYCQTKSV-HSLIIKLGFEGHVFVASAVLDAYAKCGDIQSAKMAFNQS 620

Query: 581 PGGGDCMMWSSLLRSCRVHG 600
               D +++++++ +   HG
Sbjct: 621 CKSSDVVIYNAMIIAYAHHG 640



 Score =  163 bits (413), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 135/542 (24%), Positives = 256/542 (47%), Gaps = 29/542 (5%)

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           I + +   S  LS C N+  +  G QIH  ++ LGF  ++++ + L+  Y +        
Sbjct: 49  IGKDSVALSKALSFCENSKSFILGTQIHGYIIKLGFSSDVFVSNNLIKFYAKGAVLRYGF 108

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           ++FD + ERN+ +W LM+    +    +  L ++ +M  +G  PN      +++ C   +
Sbjct: 109 NVFDGMLERNVVSWTLMVCGAIQCEEVELGLEVFLEMIRDGFVPNEFGLGSVMKACGNSV 168

Query: 226 LLDEGKQ----LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
              EG+     +H   +K+G ++ N FV+ +++ FY+  G +  A++ F+ +   DV  W
Sbjct: 169 ---EGRVFGLCVHCFALKIG-MERNPFVSCSVLSFYAKLGDIGAAERVFESLEEVDVGCW 224

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSI---RSFVEFLNFASRTGNVYFGKQIHGY 338
           N+++  YA     F+A+       L R++       +F+  +   S  G+  FG+QIHG 
Sbjct: 225 NAMIGGYAQCGYGFEAI---VTASLMRRKGIFMDKYTFINVIQGCSLLGDFNFGRQIHGL 281

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + +   +  S  V +AL DMY K   ++S + VF+    R +   N++  S     + KD
Sbjct: 282 IIRSELEL-SAPVMNALMDMYFKNGGMKSGLVVFKKMHDRDVVTWNTVFGSFSQHEDPKD 340

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC-AIKSGFESNIAVSCS 457
              +F   +   +  + +T S   +      + +LG   L  CC A+  G      ++ +
Sbjct: 341 IASLFHSFLLTSMRPNHITFSILFRECGKLLNLDLG---LQFCCLALHFGLFDEANITSA 397

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L++ +SRCG +E++H VF+   S N++ +  +++GY  N    EAL     ++Q G+  +
Sbjct: 398 LINMFSRCGKMEMAHLVFKSKVSENIIIWNELISGYKLNCCDAEALKTFYDLLQLGVEAN 457

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH-YSC--MIDMLGRAGILDKAE 574
           + TF  VL  C+ S    E QL+   +  V        H Y C  +I    + G+LD + 
Sbjct: 458 EYTFSNVLETCSRS----ENQLMNRQIHGVAFKSGFASHGYVCSSLIKGYIKCGLLDDSL 513

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL--EPVDFAVYSQVSNFYSE 632
           ++        D   W +++ +    G +    R  N+L+E   +P +F + S +S+  S 
Sbjct: 514 KVFNMLD-RPDMAAWGTMISAFVHQGWDCEAIRSLNLLIEAGEKPDEFILGSILSSCAST 572

Query: 633 IG 634
           + 
Sbjct: 573 VA 574


>gi|359480463|ref|XP_003632466.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like, partial [Vitis vinifera]
          Length = 621

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 151/510 (29%), Positives = 271/510 (53%), Gaps = 40/510 (7%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            CE  R  E +++ + +      P+  ++  +++ C     LDEG ++H+H    G+V  
Sbjct: 68  LCEQKRLREAIQILDHVD----RPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVP- 122

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM- 304
            + ++N ++D Y  C SL+ AK+ FD +   D+ SWN ++S YA    + +A +LF +M 
Sbjct: 123 GVVISNRILDMYIKCNSLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMT 182

Query: 305 ------------------QLCRKRPSIRSFVEFLNFA-------------SRTGNVYFGK 333
                             Q        R+     NF              +   +++ GK
Sbjct: 183 ERDNFSWTAMTSGYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGK 242

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           +IHG++ ++G D   V V SAL+DMYGKC  I  +  +F+    R +    +++      
Sbjct: 243 EIHGHILRIGLDLDGV-VWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKE 301

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G  ++   +F  ++  GI  +E T S  L A +  A+  LG  + +H    + GF+ +  
Sbjct: 302 GRREEGFALFSDLLKSGIWPNEFTFSGVLNACADHAAEELG--KQVHGYMTRIGFDPSSF 359

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
            + +L+  Y++CG+I+ + +VF  +P P++V +TS+++GY++NG   EAL   E++++ G
Sbjct: 360 AASTLVHMYTKCGNIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSG 419

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
             PD +TF+ VL+ C H+G+V +G   F+S+K  +G+     HY+C+ID+L R+G L +A
Sbjct: 420 TQPDHITFVGVLSACTHAGLVDKGLEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEA 479

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
           E+++ + P   D  +W+SLL  CR+HGN  + +R A  L E+EP + A Y+ ++N Y+  
Sbjct: 480 EDIIDKMPIEPDKFLWASLLGGCRIHGNLKLAKRAAEALFEIEPENPATYTTLANIYATA 539

Query: 634 GEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           G +    ++R+   AR + +  G S IE+ 
Sbjct: 540 GLWGGVAEVRKVMDARGVVKKPGLSWIEIK 569



 Score =  162 bits (410), Expect = 5e-37,   Method: Compositional matrix adjust.
 Identities = 110/430 (25%), Positives = 197/430 (45%), Gaps = 44/430 (10%)

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +++ H  + SA+T+S++L +C       EG+++H    + GF   + I + ++D+Y++  
Sbjct: 79  QILDHVDRPSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCN 138

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
             V A  LFDE+ ER+L +WN+M+  + +  R  E  +++++M     E +  S+  M  
Sbjct: 139 SLVNAKRLFDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQM----TERDNFSWTAMTS 194

Query: 220 G------------------------CSIGML------------LDEGKQLHSHVIKLGWV 243
           G                        C+   +            L  GK++H H++++G +
Sbjct: 195 GYVRHDQHEEALELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIG-L 253

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           D++  V +AL D Y  CGS+ EA+  FD     DV+SW +++  Y       +   LF  
Sbjct: 254 DLDGVVWSALSDMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSD 313

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +      P+  +F   LN  +       GKQ+HGY+T++GFD  S    S L  MY KC 
Sbjct: 314 LLKSGIWPNEFTFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSF-AASTLVHMYTKCG 372

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            I+++  VF   P   L    SL++    +G   +A++ F  ++  G   D +T    L 
Sbjct: 373 NIKNARRVFNGMPRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLS 432

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
           A + +   + G          K G          L+D  SR G ++ +  + +K+P  P+
Sbjct: 433 ACTHAGLVDKG-LEYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPD 491

Query: 483 VVCFTSIMNG 492
              + S++ G
Sbjct: 492 KFLWASLLGG 501



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 108/430 (25%), Positives = 199/430 (46%), Gaps = 47/430 (10%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T +TL   C  +  L   + + ++ + +  +  +  SNR +D ++K   L +AK+L
Sbjct: 87  PSAATYSTLLQLCLQLRALDEGMKVHAHTKTSGFVPGVVISNRILDMYIKCNSLVNAKRL 146

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM---------------VSHGIKESAS 111
           FDEM  RD+ ++N++ISG  K    ++A  L+D+M               V H   E A 
Sbjct: 147 FDEMAERDLCSWNIMISGYAKAGRLQEARKLFDQMTERDNFSWTAMTSGYVRHDQHEEAL 206

Query: 112 TFSSVLSVCSN--AGFYTE---------------GIQIHCRVLSLGFGLNLYIGSPLVDL 154
                +    N     +T                G +IH  +L +G  L+  + S L D+
Sbjct: 207 ELFRAMQRHENFKCNKFTMSSALAASAAIQSLHLGKEIHGHILRIGLDLDGVVWSALSDM 266

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y + G    A  +FD+  +R++ +W  M+  + +  R +E   +++ +   G+ PN  +F
Sbjct: 267 YGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEFTF 326

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++  C+     + GKQ+H ++ ++G+ D + F A+ LV  Y+ CG++  A++ F+ +P
Sbjct: 327 SGVLNACADHAAEELGKQVHGYMTRIGF-DPSSFAASTLVHMYTKCGNIKNARRVFNGMP 385

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             D++SW S++S YA      +AL+ F  +     +P   +FV  L+  +  G V  G +
Sbjct: 386 RPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGLE 445

Query: 335 IHGYVTKLGFDHGSVHVQ---SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
              Y   +   HG  H     + L D+  +   ++ +  + +  P   +E    L  SLL
Sbjct: 446 ---YFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMP---IEPDKFLWASLL 499

Query: 392 HS----GNIK 397
                 GN+K
Sbjct: 500 GGCRIHGNLK 509



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 63/258 (24%), Positives = 126/258 (48%), Gaps = 4/258 (1%)

Query: 52  DDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           D + K G +  A+ +FD+   RD+V++  +I    K    ++   L+ +++  GI  +  
Sbjct: 265 DMYGKCGSIGEARHIFDKTVDRDVVSWTAMIDRYFKEGRREEGFALFSDLLKSGIWPNEF 324

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           TFS VL+ C++      G Q+H  +  +GF  + +  S LV +Y + G    A  +F+ +
Sbjct: 325 TFSGVLNACADHAAEELGKQVHGYMTRIGFDPSSFAASTLVHMYTKCGNIKNARRVFNGM 384

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           P  +L +W  ++  + +  +PDE L+ +  +   G +P+ ++F  ++  C+   L+D+G 
Sbjct: 385 PRPDLVSWTSLISGYAQNGQPDEALQFFELLLKSGTQPDHITFVGVLSACTHAGLVDKGL 444

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---I 287
           +    + +   +         L+D  S  G L EA+   D +P++ D   W S++    I
Sbjct: 445 EYFDSIKEKHGLTHTADHYACLIDLLSRSGRLQEAEDIIDKMPIEPDKFLWASLLGGCRI 504

Query: 288 YADYDLIFDALELFFRMQ 305
           + +  L   A E  F ++
Sbjct: 505 HGNLKLAKRAAEALFEIE 522


>gi|449530632|ref|XP_004172298.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 157/561 (27%), Positives = 296/561 (52%), Gaps = 12/561 (2%)

Query: 109 SASTFSSVLSV---CSNA-GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           S+  FS  L +    SN   F+ +   IH R+L L    + Y+ + ++   +  G +  +
Sbjct: 8   SSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYS 67

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F ++ E N+  WN M+R        D+ + +Y  M+  G  PN  +  ++++ C+  
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARK 127

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           + +  G ++HS ++K G+ D ++FV  +L+  Y  C +  +A K FD IP  +V+SW +I
Sbjct: 128 LDVRLGLKIHSLLVKAGY-DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y       +A+  F ++     +P   S V+ L   +R G+   G+ I  Y++  G 
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              +V V ++L DMY KC  +E +  +F + P + +   ++++     +G  + A+++F 
Sbjct: 247 GR-NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLG--SCRLLHCCAIKSGFESNIAVSCSLMDAY 462
            M  E +  D  T+   L A +   + +LG  +  L+     ++ F SN  +  +L+D Y
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMD----RNEFLSNPVLGTALIDMY 361

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           S+CG +  + ++F  +   + V + ++M G S NG  +    +  ++ + G+ PD+ TF+
Sbjct: 362 SKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFI 421

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L GC H G V EG+  FN+MK V+ +    +HY CM+D+LGRAG+L++A +L+   P 
Sbjct: 422 GLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPM 481

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             + ++W +LL  C++H +  +  +V   L+ELEP +   Y Q+SN YS    +E + +I
Sbjct: 482 KPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKI 541

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R T   +++ +    S IE++
Sbjct: 542 RSTMKEQQIQKIRACSWIEID 562



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 201/436 (46%), Gaps = 4/436 (0%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G  N +K +F ++   ++  +N +I G         A++LY  M   G   +  T   VL
Sbjct: 62  GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C+       G++IH  ++  G+  ++++ + L+ LY++      AL +FD++P++N+ 
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  ++  +       E +  + K+   G++P+  S   ++  C+       G+ +  ++
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
              G +  N+FVA +L+D Y  CG+L  A   F  +P  D++SW++++  YA   L   A
Sbjct: 242 SDSG-MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L+LFF+MQ    +P   + V  L+  +  G +  G      + +  F    V + +AL D
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV-LGTALID 359

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  +  +  +F +   +     N++M  L  +G+ K    +F  +   GI  DE T
Sbjct: 360 MYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENT 419

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L   +     N G     +   + S   S     C ++D   R G +  +HQ+   
Sbjct: 420 FIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGC-MVDLLGRAGLLNEAHQLINN 478

Query: 478 IP-SPNVVCFTSIMNG 492
           +P  PN V + +++ G
Sbjct: 479 MPMKPNAVVWGALLGG 494



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 182/380 (47%), Gaps = 18/380 (4%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
            LP   TI  +   C   + +   L + S   +     +++     +  +VK  + + A 
Sbjct: 110 FLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDAL 169

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K+FD++P +++V++  +I+G     H ++A+  + +++  G+K  + +   VL+ C+  G
Sbjct: 170 KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLG 229

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
             T G  I   +   G G N+++ + L+D+Y++ G   RA  +F  +PE+++ +W+ M++
Sbjct: 230 DCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQ 289

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            +     P + L ++ +M++E ++P+  +   ++  C+    LD G    S       +D
Sbjct: 290 GYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASS------LMD 343

Query: 245 VNIFVAN-----ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI---VSIYADYDLIFD 296
            N F++N     AL+D YS CGS+ +A + F  +   D + WN++   +S+      +F 
Sbjct: 344 RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKKKDRVVWNAMMVGLSMNGHAKAVFS 403

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
              L  +  +   RP   +F+  L   +  G V  G+Q    + ++     S+     + 
Sbjct: 404 LFSLVEKHGI---RPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMV 460

Query: 357 DMYGKCNVIESSVAVFESAP 376
           D+ G+  ++  +  +  + P
Sbjct: 461 DLLGRAGLLNEAHQLINNMP 480


>gi|449441113|ref|XP_004138328.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  268 bits (684), Expect = 9e-69,   Method: Compositional matrix adjust.
 Identities = 176/625 (28%), Positives = 322/625 (51%), Gaps = 8/625 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++++  N  I  + K G L+ A +LFD+MP ++++++N LI G  +     +A   +  +
Sbjct: 243 MDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL 302

Query: 102 VS--HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +    G+    +T  ++L VCS  G    G+ IH   + LG    L + + L+D+Y + G
Sbjct: 303 LESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCG 362

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM--KAEGVEPNGLSFCYM 217
               A  LF ++  +++ +WN M+ A+       E   +  KM  + E +E N ++   +
Sbjct: 363 CLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNL 422

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C     L   + LH + ++  +      + NA +  Y+ CGSL+ A+  F  +    
Sbjct: 423 LPACLEESELLSLRALHGYSLRHSF-QYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKS 481

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V SWN+++  +A       AL+ +F M      P   S V  L    R G + +GK+IHG
Sbjct: 482 VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHG 541

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           +V + G +  S  V  +L  +Y  C+        FE+   ++  C N++++    +    
Sbjct: 542 FVLRNGLEMNSF-VAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPN 600

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+ +F  M+ +G+  DE+ +++ L A S  ++  LG  + +HC A+K+    +  V+CS
Sbjct: 601 EALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLG--KEVHCFALKNSLMEDNFVACS 658

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           LMD Y++ G +  S ++F ++    V  +  ++ G+  +G G +A+++ E M +    PD
Sbjct: 659 LMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPD 718

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           + TFL VL  C H+G+V EG      M+++Y ++ + +HY+C+IDMLGRAG L++A   +
Sbjct: 719 RFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFI 778

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            + P   D  +WSSLL S   + +  +G + A  L+ LE      Y  +SN Y+  G+++
Sbjct: 779 NEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWD 838

Query: 638 VSMQIRETALARKLTRDIGHSLIEV 662
           V   +R+      L +D+G S IE+
Sbjct: 839 VVRMVRQKMKDLSLQKDVGCSWIEL 863



 Score =  188 bits (478), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 138/581 (23%), Positives = 273/581 (46%), Gaps = 20/581 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HG 105
           + R I  +   G+   ++ +FD +  +++  +N L+SG  +     +A++ + E++S   
Sbjct: 146 NTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTE 205

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
            +    TF  ++  C+       G  +H   + +G  ++L++G+ ++ LY + G    A+
Sbjct: 206 FQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAV 265

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM--KAEGVEPNGLSFCYMVRGCSI 223
           +LFD++PE+NL +WN ++R F E     E  R +  +    +G+ P+  +   ++  CS 
Sbjct: 266 ELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSG 325

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +D G  +H   +KLG V   + V NAL+D YS CG L EA   F  I    V+SWNS
Sbjct: 326 EGNVDVGMVIHGMAVKLGLVH-ELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNS 384

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++  Y+    +F+  +L  +M +  +   +   + +  L        +   + +HGY  +
Sbjct: 385 MIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLR 444

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             F +  + + +A    Y KC  +  +  VF     +S+   N+++     +G+   A++
Sbjct: 445 HSFQYKEL-INNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALD 503

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +  M   GI  D+ ++ + L A         G  + +H   +++G E N  V+ SL+  
Sbjct: 504 FYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG--KEIHGFVLRNGLEMNSFVAVSLLSL 561

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y  C         FE +   N VC+ ++++GYS+N +  EAL +   M+  GL PD++  
Sbjct: 562 YFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAI 621

Query: 522 LCVLAGCNHSGMVKEGQLV--FNSMKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQ 578
             +L  C+    +  G+ V  F    S+     +    +C ++DM  ++G L  ++ +  
Sbjct: 622 ASILGACSQLSALGLGKEVHCFALKNSL----MEDNFVACSLMDMYAKSGFLGHSQRIFN 677

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           +   G +   W+ ++    VHG    G +   +  +++  D
Sbjct: 678 RL-NGKEVASWNVMITGFGVHGQ---GNKAVELFEDMKRSD 714



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/465 (24%), Positives = 222/465 (47%), Gaps = 25/465 (5%)

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
           F  +  + + L+ +Y   G  + +  +FD L  +NL  WN ++  +      DE +  + 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 201 KM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA 259
           ++      +P+  +F  +++ C+    +  GK +H   +K+G + +++FV NA++  Y  
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLI-MDLFVGNAMIALYGK 257

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR--PSIRSFV 317
           CG L EA + FD +P  ++ISWNS++  +++     +A   F  +        P + + V
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMV 317

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             L   S  GNV  G  IHG   KLG  H  + V +AL DMY KC  +  +  +F     
Sbjct: 318 TLLPVCSGEGNVDVGMVIHGMAVKLGLVH-ELMVCNALIDMYSKCGCLSEAAILFRKIEN 376

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFG--FMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           +S+   NS++ +    G + +  ++    +M +E + ++EVT+   L A      + L S
Sbjct: 377 KSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPA--CLEESELLS 434

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            R LH  +++  F+    ++ + + AY++CG +  +  VF  + + +V  + +++ G+++
Sbjct: 435 LRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN-------SMKSVY 548
           NG   +ALD    M + G++PD  + + +L  C   G+++ G+ +          M S  
Sbjct: 495 NGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLRNGLEMNSFV 554

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            +     ++ C     GR            +T G  + + W+++L
Sbjct: 555 AVSLLSLYFHCSKPFYGRTYF---------ETMGDKNSVCWNAML 590



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 182/425 (42%), Gaps = 11/425 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLNSAK 64
           L+P V T+ TL P C+    +   +++         ++ +   N  ID + K G L+ A 
Sbjct: 309 LIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAA 368

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE-----SASTFSSVLSV 119
            LF ++  + +V++N +I   G +         +D +    ++E     +  T  ++L  
Sbjct: 369 ILFRKIENKSVVSWNSMI---GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPA 425

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C           +H   L   F     I +  +  Y + G  V A  +F  +  +++++W
Sbjct: 426 CLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSW 485

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++    +   P + L  Y +M   G+ P+  S   ++  C    LL  GK++H  V++
Sbjct: 486 NAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLR 545

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +++N FVA +L+  Y  C      +  F+ +   + + WN+++S Y+  +L  +AL 
Sbjct: 546 NG-LEMNSFVAVSLLSLYFHCSKPFYGRTYFETMGDKNSVCWNAMLSGYSQNELPNEALS 604

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF +M      P   +    L   S+   +  GK++H +  K      +  V  +L DMY
Sbjct: 605 LFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNF-VACSLMDMY 663

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K   +  S  +F    G+ +   N ++T     G    AVE+F  M       D  T  
Sbjct: 664 AKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFL 723

Query: 420 TTLKA 424
             L+A
Sbjct: 724 GVLQA 728



 Score = 80.1 bits (196), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 127/269 (47%), Gaps = 7/269 (2%)

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           NV  G+++   +       G   + + L  MY  C     S  VF+    ++L   N+L+
Sbjct: 122 NVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALV 181

Query: 388 TSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +  + +    +A+  F  ++       D  T    +KA +     +LG  + +H  A+K 
Sbjct: 182 SGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG--KSVHGMAVKM 239

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G   ++ V  +++  Y +CG ++ + ++F+K+P  N++ + S++ G+S NG   EA    
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAF 299

Query: 507 EVMIQR--GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
             +++   GLIPD  T + +L  C+  G V  G +V + M    G+  +    + +IDM 
Sbjct: 300 RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVG-MVIHGMAVKLGLVHELMVCNALIDMY 358

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            + G L +A  L ++       + W+S++
Sbjct: 359 SKCGCLSEAAILFRKIE-NKSVVSWNSMI 386



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           + S F  +  ++  L+  YS CG+   S  VF+++ + N+  + ++++GY RN +  EA+
Sbjct: 135 VSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAI 194

Query: 504 -DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
              LE++      PD  TF C++  C     +  G+ V + M    G+  D    + MI 
Sbjct: 195 HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV-HGMAVKMGLIMDLFVGNAMIA 253

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
           + G+ G LD+A EL  + P   + + W+SL+R    +G  +   R    L+E
Sbjct: 254 LYGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLE 304


>gi|414867972|tpg|DAA46529.1| TPA: hypothetical protein ZEAMMB73_503614 [Zea mays]
          Length = 993

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 163/593 (27%), Positives = 308/593 (51%), Gaps = 18/593 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  F     +  A++LFD M  RD +++N +IS         +   +  +M    +
Sbjct: 183 ANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEV 242

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K   +T  S++SVC+++     G  IH   +S G   ++ + + LV++Y   G    A  
Sbjct: 243 KPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGLHCSVPLINALVNMYSTAGKLDEAES 302

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGM 225
           LF  +  R++ +WN M+ ++ + +   E L    ++ + +   PN ++F   +  CS   
Sbjct: 303 LFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPE 362

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            L  G+ +H+ +++    +V + + N+L+  YS C S+ + ++ F+ +P  DV+S N + 
Sbjct: 363 ALMNGRTIHAMILQRSLQNV-LLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLT 421

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY-FGKQIHGYVTKLGF 344
             YA  + + +A+ +F  M+    +P+  + +         G+++ +G  +H YVT+ G 
Sbjct: 422 GGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGL 481

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
                ++ ++L  MY  C  +ESS  +F     +S+   N+++ + +  G  ++A+++F 
Sbjct: 482 -LSDEYITNSLITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFM 540

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDA 461
                G  LD   L+  L     S+SANL S      LH  ++K+G + +  V  + MD 
Sbjct: 541 DSQHAGNKLDRFCLAECL-----SSSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDM 595

Query: 462 YSRCGHIELSHQVFEKIPSPN---VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           Y +CG ++    + + +P P      C+ ++++GY+R G  +EA D  + M+  G  PD 
Sbjct: 596 YGKCGKMDC---MLKTLPDPAHRPTQCWNTLISGYARYGYFKEAEDTFKHMVSVGQKPDY 652

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTF+ +L+ C+H+G++ +G   +NSM   +G+    +H  C++D+LGR G   +AE+ + 
Sbjct: 653 VTFVALLSACSHAGLIDKGMDYYNSMAPTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFID 712

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           + P   + ++W SLL S R H N  IGR+ A  L+EL+P D + Y  +SN Y+
Sbjct: 713 EMPVLPNDLIWRSLLSSSRTHKNLDIGRKAAKNLLELDPFDDSAYVLLSNLYA 765



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 142/556 (25%), Positives = 265/556 (47%), Gaps = 14/556 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y     +  +   G + +A++LF EMP R++V++  ++         ++AL  Y  M 
Sbjct: 78  NVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVALSSNGCMEEALVAYRRMR 137

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +A+  ++V+S+C        G+Q+   V+  G   ++ + + L+ ++  +    
Sbjct: 138 KEGVMCNANALATVVSLCGALEDEVAGLQVTAHVVVSGLLTHVSVANSLITMFGNLRRVQ 197

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD + ER+  +WN M+  +       +   + + M+   V+P+  + C +V  C+
Sbjct: 198 DAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDMRHGEVKPDVTTLCSLVSVCA 257

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              L+  G  +HS  +  G +  ++ + NALV+ YS  G L EA+  F  +   DVISWN
Sbjct: 258 SSDLVALGSGIHSLCVSSG-LHCSVPLINALVNMYSTAGKLDEAESLFRNMSRRDVISWN 316

Query: 283 SIVSIYADYDLIFDALELFFR-MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           +++S Y   +   +ALE   + +Q     P+  +F   L   S    +  G+ IH  + +
Sbjct: 317 TMISSYVQSNSCVEALETLGQLLQTDEGPPNSMTFSSALGACSSPEALMNGRTIHAMILQ 376

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
               +  + + ++L  MY KCN +E +  VFES P   +  CN L        ++ +A+ 
Sbjct: 377 RSLQN-VLLIGNSLLTMYSKCNSMEDTERVFESMPCYDVVSCNVLTGGYAALEDVANAMR 435

Query: 402 MFGFMVDEGIGLDEVT---LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           +F +M   GI  + +T   L  T K+L    S  +     LH    ++G  S+  ++ SL
Sbjct: 436 VFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMP----LHAYVTQTGLLSDEYITNSL 491

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y+ CG +E S  +F +I + +V+ + +I+    R+G G EA+ +       G   D+
Sbjct: 492 ITMYATCGDLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDR 551

Query: 519 VTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
                 L+   +   ++EG QL   S+K+  G+D D    +  +DM G+ G +D   + L
Sbjct: 552 FCLAECLSSSANLASLEEGMQLHGLSVKN--GLDCDSHVVNATMDMYGKCGKMDCMLKTL 609

Query: 578 QQTPGGGDCMMWSSLL 593
              P       W++L+
Sbjct: 610 PD-PAHRPTQCWNTLI 624



 Score =  166 bits (421), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 130/538 (24%), Positives = 251/538 (46%), Gaps = 15/538 (2%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE- 128
           MP R   ++   +SGC +      A  L   M    +  S    +S+++ C + G+    
Sbjct: 1   MPHRTSSSWYTAVSGCARCGLESTAFTLLRVMRERDVPLSGFALASLVTACEHRGWQEGA 60

Query: 129 --GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  IH      G   N+YIG+ L+ LY   G  + A  LF E+P+RN+ +W  ++ A 
Sbjct: 61  ACGAAIHALTHRAGLMGNVYIGTALLHLYGSRGLVLNAQRLFWEMPQRNVVSWTAIMVAL 120

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWVD 244
                 +E L  Y +M+ EGV  N  +   +V  C  G L DE  G Q+ +HV+  G + 
Sbjct: 121 SSNGCMEEALVAYRRMRKEGVMCNANALATVVSLC--GALEDEVAGLQVTAHVVVSGLL- 177

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++ VAN+L+  +     + +A++ FD +   D ISWN+++S+Y+  ++      +   M
Sbjct: 178 THVSVANSLITMFGNLRRVQDAERLFDRMEERDRISWNAMISMYSHEEVYSKCFIVLSDM 237

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +    +P + +    ++  + +  V  G  IH      G  H SV + +AL +MY     
Sbjct: 238 RHGEVKPDVTTLCSLVSVCASSDLVALGSGIHSLCVSSGL-HCSVPLINALVNMYSTAGK 296

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG--FMVDEGIGLDEVTLSTTL 422
           ++ + ++F +   R +   N++++S + S +  +A+E  G     DEG   + +T S+ L
Sbjct: 297 LDEAESLFRNMSRRDVISWNTMISSYVQSNSCVEALETLGQLLQTDEGPP-NSMTFSSAL 355

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A   S+   L + R +H   ++   ++ + +  SL+  YS+C  +E + +VFE +P  +
Sbjct: 356 GA--CSSPEALMNGRTIHAMILQRSLQNVLLIGNSLLTMYSKCNSMEDTERVFESMPCYD 413

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           VV    +  GY+       A+ +   M   G+ P+ +T + +   C   G +    +  +
Sbjct: 414 VVSCNVLTGGYAALEDVANAMRVFSWMRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLH 473

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +  +  G+ +D    + +I M    G L+ +  +  +       + W++++ +   HG
Sbjct: 474 AYVTQTGLLSDEYITNSLITMYATCGDLESSTGIFSRI-NNKSVISWNAIIAANVRHG 530



 Score = 79.7 bits (195), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 67/290 (23%), Positives = 127/290 (43%), Gaps = 5/290 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSS-SLLLDSYCQPNPQL-NIYSSNRTIDDFVKSG 58
           M  T + P   T+  L  TC S+  L S  + L +Y      L + Y +N  I  +   G
Sbjct: 440 MRGTGIKPNYITMINLQGTCKSLGDLHSYGMPLHAYVTQTGLLSDEYITNSLITMYATCG 499

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            L S+  +F  +  + ++++N +I+   +    ++A+ L+ +    G K      +  LS
Sbjct: 500 DLESSTGIFSRINNKSVISWNAIIAANVRHGRGEEAIKLFMDSQHAGNKLDRFCLAECLS 559

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
             +N     EG+Q+H   +  G   + ++ +  +D+Y + G     L    +   R    
Sbjct: 560 SSANLASLEEGMQLHGLSVKNGLDCDSHVVNATMDMYGKCGKMDCMLKTLPDPAHRPTQC 619

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN ++  +       E    +  M + G +P+ ++F  ++  CS   L+D+G   ++ + 
Sbjct: 620 WNTLISGYARYGYFKEAEDTFKHMVSVGQKPDYVTFVALLSACSHAGLIDKGMDYYNSMA 679

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DDVISWNSIVS 286
               V   I     +VD     G   EA+K  D +PV  +D+I W S++S
Sbjct: 680 PTFGVSPGIKHCVCIVDLLGRLGKFAEAEKFIDEMPVLPNDLI-WRSLLS 728


>gi|356495778|ref|XP_003516750.1| PREDICTED: pentatricopeptide repeat-containing protein At5g13270,
           chloroplastic-like [Glycine max]
          Length = 765

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 290/558 (51%), Gaps = 5/558 (0%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           GI  +  ++  +  +C   G  ++G   H R+  +    N +I + ++ +Y        A
Sbjct: 87  GISINPRSYEYLFKMCGTLGALSDGKLFHNRLQRMA-NSNKFIDNCILKMYCDCKSFTSA 145

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
              FD++ +++L++W+ ++ A+ E  R DE +R++ +M   G+ PN   F  ++   +  
Sbjct: 146 ERFFDKIVDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDP 205

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            +LD GKQ+HS +I++G+   NI +   + + Y  CG L  A+ + + +   + ++   +
Sbjct: 206 SMLDLGKQIHSQLIRIGFA-ANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGL 264

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  Y       DAL LF +M           F   L   +  G++Y GKQIH Y  KLG 
Sbjct: 265 MVGYTKAARNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLGL 324

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           +   V V + L D Y KC   E++   FES    +    ++L+     SG    A+E+F 
Sbjct: 325 E-SEVSVGTPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFK 383

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            +  +G+ L+    +   +A   SA ++L     +H  AIK G  + ++   +++  YS+
Sbjct: 384 AIRSKGVLLNSFIYTNIFQA--CSAVSDLICGAQIHADAIKKGLVAYLSGESAMISMYSK 441

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG ++ +HQ F  I  P+ V +T+I+  ++ +G   EAL + + M   G+ P+ VTF+ +
Sbjct: 442 CGQVDYAHQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGL 501

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  C+HSG+VKEG+ + +SM   YG++    HY+CMID+  RAG+L +A E+++  P   
Sbjct: 502 LNACSHSGLVKEGKKILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEP 561

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           D M W SLL  C  H N  IG   A+ +  L+P+D A Y  + N Y+  G+++ + Q R+
Sbjct: 562 DVMSWKSLLGGCWSHRNLEIGMIAADNIFRLDPLDSATYVIMFNLYALAGKWDEAAQFRK 621

Query: 645 TALARKLTRDIGHSLIEV 662
               R L +++  S I V
Sbjct: 622 MMAERNLRKEVSCSWIIV 639



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 117/485 (24%), Positives = 230/485 (47%), Gaps = 8/485 (1%)

Query: 11  RTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           R+   L   C ++  LS   L  +  Q     N +  N  +  +       SA++ FD++
Sbjct: 93  RSYEYLFKMCGTLGALSDGKLFHNRLQRMANSNKFIDNCILKMYCDCKSFTSAERFFDKI 152

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +D+ +++ +IS   +     +A+ L+  M+  GI  ++S FS+++   ++      G 
Sbjct: 153 VDQDLSSWSTIISAYTEEGRIDEAVRLFLRMLDLGITPNSSIFSTLIMSFTDPSMLDLGK 212

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH +++ +GF  N+ I + + ++Y++ G    A    +++  +N      ++  + + +
Sbjct: 213 QIHSQLIRIGFAANISIETLISNMYVKCGWLDGAEVATNKMTRKNAVACTGLMVGYTKAA 272

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           R  + L ++ KM +EGVE +G  F  +++ C+    L  GKQ+HS+ IKLG ++  + V 
Sbjct: 273 RNRDALLLFGKMISEGVELDGFVFSIILKACAALGDLYTGKQIHSYCIKLG-LESEVSVG 331

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
             LVDFY  C     A+++F+ I   +  SW+++++ Y        ALE+F  ++   K 
Sbjct: 332 TPLVDFYVKCARFEAARQAFESIHEPNDFSWSALIAGYCQSGQFDRALEVFKAIR--SKG 389

Query: 311 PSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
             + SF+        S   ++  G QIH    K G     +  +SA+  MY KC  ++ +
Sbjct: 390 VLLNSFIYTNIFQACSAVSDLICGAQIHADAIKKGLV-AYLSGESAMISMYSKCGQVDYA 448

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
              F +          +++ +  + G   +A+ +F  M   G+  + VT    L A S S
Sbjct: 449 HQAFLTIDKPDTVAWTAIICAHAYHGKAFEALRLFKEMQGSGVRPNAVTFIGLLNACSHS 508

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFT 487
                G  ++L   + + G    I     ++D YSR G ++ + +V   +P  P+V+ + 
Sbjct: 509 GLVKEGK-KILDSMSDEYGVNPTIDHYNCMIDVYSRAGLLQEALEVIRSLPFEPDVMSWK 567

Query: 488 SIMNG 492
           S++ G
Sbjct: 568 SLLGG 572


>gi|147855060|emb|CAN82371.1| hypothetical protein VITISV_027622 [Vitis vinifera]
          Length = 697

 Score =  268 bits (684), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 159/539 (29%), Positives = 294/539 (54%), Gaps = 13/539 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH ++++ G   N ++ + L++ Y+  G    A  +F   P +N+ +W +++    +  
Sbjct: 42  QIHAQIITSGLTHNTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKND 101

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E + ++ +M     +PN ++   ++   +   L+   K +H   ++ G+ + N+FV 
Sbjct: 102 CFVEAIDVFREMTMGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGF-EGNVFVE 160

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            ALVD YS  G +  A++ F+ +   +V+SWN+IVS Y+D+    +A++LF    L R++
Sbjct: 161 TALVDMYSKFGCMGVARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLF---NLMRRK 217

Query: 311 PSIRSFVEFLNFASRT---GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             +  F   ++    +   G +  G  IHG++ + G+++   H+++AL D+Y   N ++ 
Sbjct: 218 GLLVDFYTIMSLIPASLSVGCLQVGTGIHGFIIRTGYENDK-HIKTALMDIYVSHNCVDD 276

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALS 426
           +  VF     + +     ++T      +   A++ F  M+  + + LD + L   L + S
Sbjct: 277 AHRVFSEMFVKDVAAWTLMLTGFSSGRHWDRAIKHFNKMLGIQNLKLDSIVLMGILSSCS 336

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            S +   G  R +H  AIK+ F +NI V  +++D Y+ CG++E + + F  +   +VVC+
Sbjct: 337 HSGALQQG--RRVHALAIKTCFANNIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCW 394

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMK 545
            +++ G   NG G +A+D+   M   GL PD+ TF+ VL  C+H+GMV EG Q+ ++ +K
Sbjct: 395 NAMIAGNGMNGYGTDAIDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYHMVK 454

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           + + I  + QHY+C+ID+LGRAG LD A   +   P   D  ++S+LL +CR+HGN  +G
Sbjct: 455 TSHDI-PNLQHYACVIDILGRAGQLDAAYSFINNMPFQPDFDVYSTLLGACRIHGNIKLG 513

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             ++  + E+EP D   Y  +SN Y+  G +E     R +  +++L +D G S IE+N 
Sbjct: 514 HEISQKIFEMEPNDAGYYVLLSNMYALAGNWEGVKMTRASLRSKRLKKDPGFSSIEINQ 572



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/453 (24%), Positives = 223/453 (49%), Gaps = 11/453 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N + SN  ++ +V  G L  AK++F   P +++V++ +LISG  K     +A+ ++ EM 
Sbjct: 55  NTFLSNSLMNAYVYCGLLADAKQIFHHTPCKNVVSWTILISGLAKNDCFVEAIDVFREMT 114

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               K +A T SSVL   +N G       +HC  +  GF  N+++ + LVD+Y + G   
Sbjct: 115 MGNFKPNAVTISSVLPAFANLGLIRIAKSVHCFWVRGGFEGNVFVETALVDMYSKFGCMG 174

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC- 221
            A  LF+ + ERN+ +WN ++  + +    +E + ++N M+ +G+  +  +   ++    
Sbjct: 175 VARQLFESMSERNVVSWNAIVSGYSDHGFSEEAIDLFNLMRRKGLLVDFYTIMSLIPASL 234

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S+G  L  G  +H  +I+ G+ + +  +  AL+D Y +   + +A + F  + V DV +W
Sbjct: 235 SVG-CLQVGTGIHGFIIRTGYEN-DKHIKTALMDIYVSHNCVDDAHRVFSEMFVKDVAAW 292

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYV 339
             +++ ++       A++ F +M L  +   + S V    L+  S +G +  G+++H   
Sbjct: 293 TLMLTGFSSGRHWDRAIKHFNKM-LGIQNLKLDSIVLMGILSSCSHSGALQQGRRVHALA 351

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K  F + ++ V SA+ DMY  C  +E +   F     + + C N+++     +G   DA
Sbjct: 352 IKTCFAN-NIFVGSAVIDMYANCGNLEDAKRFFYGMGEKDVVCWNAMIAGNGMNGYGTDA 410

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE-SNIAVSCSL 458
           +++F  M   G+  DE T  + L A S +     G     H   +K+  +  N+     +
Sbjct: 411 IDLFLQMKGSGLDPDESTFVSVLYACSHAGMVYEGLQIFYH--MVKTSHDIPNLQHYACV 468

Query: 459 MDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
           +D   R G ++ ++     +P  P+   +++++
Sbjct: 469 IDILGRAGQLDAAYSFINNMPFQPDFDVYSTLL 501


>gi|297813281|ref|XP_002874524.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297320361|gb|EFH50783.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 688

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 192/660 (29%), Positives = 338/660 (51%), Gaps = 53/660 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++ +N  I  +V    L+ A K+FDEM  R++VT+  ++SG      P +A+ LY  MV
Sbjct: 39  NVFLANNVISMYVDFRLLSDAHKVFDEMTERNIVTWTTMVSGYTCDGKPSKAIELYRRMV 98

Query: 103 SHGIKESASTF--SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG- 159
               +E+A+ F  S+VL  C   G    G  ++ R+       ++ + + +VD++++ G 
Sbjct: 99  ESQ-EEAANEFIYSAVLKACGLVGDIQLGSFVYERIGKENLKGDVVLMNSVVDMFVKNGR 157

Query: 160 -------------PSV-----------------RALDLFDELPERNLATWNLMLRAFCEL 189
                        P+                   A+ LF+ +P+ N+ +WN ++  F + 
Sbjct: 158 LSEANSSFKEILRPNSTSWNTLISGYCKAGMVEEAVSLFNRIPQPNIVSWNCLISGFVDK 217

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
             P   L    +M+ EG+  +G +    ++ CS G LL  GKQLH  V+K G ++ + F 
Sbjct: 218 GSP-RALEFLVRMQREGLVLDGFALPCGLKACSFGGLLTMGKQLHGCVVKSG-LESSPFA 275

Query: 250 ANALVDFYSACGSLIEAKKSF-DFIPV--DDVISWNSIVS---IYADYDLIFDALELFFR 303
            +AL+D YS CGSL +A   F    P   + V  WNS++S   I  + +     L L ++
Sbjct: 276 LSALIDMYSNCGSLSDAADVFHQEKPALCNTVAVWNSMLSGFLINEENEAALGLLLLLYK 335

Query: 304 MQLCRKRPSIRSFVEF-LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
             LC    ++   ++  +N      N+  G Q+H  V   G++   + V S L D++   
Sbjct: 336 SDLCFDSYTLSGALKICINLV----NLRLGLQVHSLVVVSGYELDYI-VGSILVDLHANV 390

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             I+ +  +F   P + +   + L+   + SG    A  +F  ++  G+  D+  +S+ L
Sbjct: 391 GNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSGFNSLAFYLFRELIKLGLDADQFIVSSIL 450

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           K    S+ A+LG  + +H   IK G++S    + +L D Y +CG I+ S  +F+ +   +
Sbjct: 451 KV--CSSLASLGCGKQIHGLCIKKGYQSEPVTATALGDMYVKCGEIDNSVVLFDGMLERD 508

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           VV +T I+ G+ +NG   EA      MI   + P++VTFL +L+ C HSG+++E + +  
Sbjct: 509 VVSWTGIIVGFGQNGRVEEAFQYFHKMINSEIEPNEVTFLGLLSACRHSGLLEEARSILE 568

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           +MK  YG++   +HY C++D+LG+AG   +AEEL+++ P   D  +W SLL +C  H N 
Sbjct: 569 TMKCEYGLEPYLEHYYCVVDLLGQAGRFQEAEELIKKMPLEPDKTIWMSLLTACGTHKNA 628

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL-TRDIGHSLIE 661
            +   +A  L++  P D ++Y+ +SN Y+ +G ++   ++RE   A+KL  ++ G S IE
Sbjct: 629 GLITVIAEKLLKAFPEDPSLYTSLSNAYATLGMWDQLSEVREA--AKKLGAKESGMSWIE 686



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 109/452 (24%), Positives = 204/452 (45%), Gaps = 54/452 (11%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C     +  G  I   ++  G   N+++ + ++ +Y+       A  +FDE+ ERN+ TW
Sbjct: 15  CGKIQAFKRGESIQAHIVKQGISQNVFLANNVISMYVDFRLLSDAHKVFDEMTERNIVTW 74

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY--MVRGCSIGMLLDEGKQLHSHV 237
             M+  +    +P + + +Y +M  E  E     F Y  +++ C +   +  G  ++  +
Sbjct: 75  TTMVSGYTCDGKPSKAIELYRRM-VESQEEAANEFIYSAVLKACGLVGDIQLGSFVYERI 133

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            K   +  ++ + N++VD +   G L EA  SF  I   +  SWN+++S Y    ++ +A
Sbjct: 134 GKEN-LKGDVVLMNSVVDMFVKNGRLSEANSSFKEILRPNSTSWNTLISGYCKAGMVEEA 192

Query: 298 LELFFRMQLCRKRPSIRSF---------------VEFLNFASRTGNVY------------ 330
           + LF R+     +P+I S+               +EFL    R G V             
Sbjct: 193 VSLFNRI----PQPNIVSWNCLISGFVDKGSPRALEFLVRMQREGLVLDGFALPCGLKAC 248

Query: 331 -------FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPG--RSL 380
                   GKQ+HG V K G +  S    SAL DMY  C  +  +  VF +  P    ++
Sbjct: 249 SFGGLLTMGKQLHGCVVKSGLE-SSPFALSALIDMYSNCGSLSDAADVFHQEKPALCNTV 307

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL-- 438
              NS+++  L +   + A+ +   +    +  D  TLS  LK        NL + RL  
Sbjct: 308 AVWNSMLSGFLINEENEAALGLLLLLYKSDLCFDSYTLSGALK-----ICINLVNLRLGL 362

Query: 439 -LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H   + SG+E +  V   L+D ++  G+I+ +H++F ++P+ +++ F+ ++ G  ++G
Sbjct: 363 QVHSLVVVSGYELDYIVGSILVDLHANVGNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSG 422

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
               A  +   +I+ GL  D+     +L  C+
Sbjct: 423 FNSLAFYLFRELIKLGLDADQFIVSSILKVCS 454



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 120/502 (23%), Positives = 213/502 (42%), Gaps = 45/502 (8%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAK------------------------ 64
           S + +   + N + ++   N  +D FVK+G L+ A                         
Sbjct: 127 SFVYERIGKENLKGDVVLMNSVVDMFVKNGRLSEANSSFKEILRPNSTSWNTLISGYCKA 186

Query: 65  -------KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
                   LF+ +P  ++V++N LISG      P+ AL     M   G+          L
Sbjct: 187 GMVEEAVSLFNRIPQPNIVSWNCLISGFVDKGSPR-ALEFLVRMQREGLVLDGFALPCGL 245

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF-DELPE--R 174
             CS  G  T G Q+H  V+  G   + +  S L+D+Y   G    A D+F  E P    
Sbjct: 246 KACSFGGLLTMGKQLHGCVVKSGLESSPFALSALIDMYSNCGSLSDAADVFHQEKPALCN 305

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
            +A WN ML  F      +  L +   +    +  +  +    ++ C   + L  G Q+H
Sbjct: 306 TVAVWNSMLSGFLINEENEAALGLLLLLYKSDLCFDSYTLSGALKICINLVNLRLGLQVH 365

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           S V+  G+ +++  V + LVD ++  G++ EA K F  +P  D+I+++ ++         
Sbjct: 366 SLVVVSGY-ELDYIVGSILVDLHANVGNIQEAHKLFHRLPNKDIIAFSGLIRGCVKSG-- 422

Query: 295 FDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           F++L  +   +L +       F+    L   S   ++  GKQIHG   K G+    V   
Sbjct: 423 FNSLAFYLFRELIKLGLDADQFIVSSILKVCSSLASLGCGKQIHGLCIKKGYQSEPV-TA 481

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL DMY KC  I++SV +F+    R +     ++     +G +++A + F  M++  I 
Sbjct: 482 TALGDMYVKCGEIDNSVVLFDGMLERDVVSWTGIIVGFGQNGRVEEAFQYFHKMINSEIE 541

Query: 413 LDEVTLSTTLKALSVSASANLGSCR-LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
            +EVT    L A     S  L   R +L     + G E  +     ++D   + G  + +
Sbjct: 542 PNEVTFLGLLSA--CRHSGLLEEARSILETMKCEYGLEPYLEHYYCVVDLLGQAGRFQEA 599

Query: 472 HQVFEKIP-SPNVVCFTSIMNG 492
            ++ +K+P  P+   + S++  
Sbjct: 600 EELIKKMPLEPDKTIWMSLLTA 621


>gi|147833266|emb|CAN77478.1| hypothetical protein VITISV_013730 [Vitis vinifera]
          Length = 1009

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 174/615 (28%), Positives = 310/615 (50%), Gaps = 30/615 (4%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMV----TYNLLISGCGKFRHPKQALYLY 98
           ++ S +  +  F ++G ++ A +  +EMP R +     ++N +ISGC +  + + AL ++
Sbjct: 283 DLISWSALLSGFARNGEIDLALETLEEMPERGLQPTVNSWNGIISGCVQNGYLEDALDMF 342

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             M+ +    +  T +S+L  C+       G  IH      G   N+Y+   ++D+Y + 
Sbjct: 343 SRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKC 402

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A  +F +   +N A WN M+ A+    + ++ L +   M+ +G +P+ +++  ++
Sbjct: 403 GSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTIL 462

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDD 277
            G +   L  +  +L S ++++G +  N+   N L+  +   G   EA K F  +    D
Sbjct: 463 SGHARNGLKTQAXELLSEMVQMG-LKPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSD 521

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
             + N ++++                      RP+  +    L   +       GK+IHG
Sbjct: 522 GCNPNEVLNL--------------------SMRPNPITITGALPACADLNLWCQGKEIHG 561

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           Y  + GF+  ++ V SAL DMY KC+ ++S+  VF    GR+    N+LM   +++   +
Sbjct: 562 YTLRNGFE-PNIFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPE 620

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVSC 456
           +A+++F  M+ EG+    +T      A    A+   G  R LH  A K    E   A+  
Sbjct: 621 EALKLFLEMLGEGLQPSSITFMILFPACGDIAAIRFG--RGLHGYAAKCQLDELKNAIXS 678

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+D Y++CG I  +  VF+     +V  + ++++ +S +GM R A  +   M   G+ P
Sbjct: 679 ALIDMYAKCGSILDAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXP 738

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D +TF+ +L+ C   G+V+EG   FNSM+  YG+ A  +HY+CM+ +LG AG+LD+A + 
Sbjct: 739 DHITFVSLLSACARDGLVEEGWKYFNSMEISYGVAATLEHYTCMVGILGGAGLLDEALDF 798

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           ++Q P   D  MW++LL++CRVH N  IG R A  L ELEP +   Y  +SN Y   G +
Sbjct: 799 IRQMPYPPDACMWATLLQACRVHSNPEIGERAAKALFELEPDNATNYMLLSNIYVSSGMW 858

Query: 637 EVSMQIRETALARKL 651
           + +  +R     RKL
Sbjct: 859 DFAKNLRSFMRGRKL 873



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 130/498 (26%), Positives = 231/498 (46%), Gaps = 83/498 (16%)

Query: 90  HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGLNLYIG 148
           HP+  L  + + +++      S   S+L+ CS     +E  QIH RV+ L        IG
Sbjct: 63  HPQTLLPSFVDTLTNSSPTEISDSISLLNRCST---LSEFRQIHARVVKLNALKWKSSIG 119

Query: 149 SPLVDLYMRMGPSVR-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
           + LV LY +   S+  A  L DE+P R +  +  ++R++C   + DE+   +  M  EG+
Sbjct: 120 NKLVVLYCKNQWSLEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGM 179

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P+      +++ CS  +L   GK +H  VI+   V+ ++FV NAL+ FYS CG L  ++
Sbjct: 180 LPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKS-VESDVFVGNALIHFYSNCGDLGSSR 238

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
             F  +   DV+SW +++S Y +  L  +A  +F  MQL   +P + S+   L+  +R G
Sbjct: 239 SVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSGFARNG 298

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE----CC 383
                                                I+ ++   E  P R L+      
Sbjct: 299 E------------------------------------IDLALETLEEMPERGLQPTVNSW 322

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N +++  + +G ++DA++MF  M+      + +T+++ L A +   +  LG  + +H  A
Sbjct: 323 NGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLG--KAIHXIA 380

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS----------------------- 480
            K G   N+ V  S++D YS+CG  + + +VF K  +                       
Sbjct: 381 XKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDAL 440

Query: 481 ------------PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
                       P+V+ + +I++G++RNG+  +A ++L  M+Q GL P+ V+F  +++G 
Sbjct: 441 GLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAXELLSEMVQMGLKPNVVSFNVLISGF 500

Query: 529 NHSGMVKEGQLVFNSMKS 546
             SG+  E   VF  M+S
Sbjct: 501 QQSGLSYEALKVFRIMQS 518



 Score =  152 bits (385), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 139/632 (21%), Positives = 276/632 (43%), Gaps = 89/632 (14%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M+   +LP    + T+   C++++      ++  +  + + + +++  N  I  +   G 
Sbjct: 174 MVYEGMLPDKYLVPTILKACSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGD 233

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L S++ +F  M  RD+V++  LIS   +     +A +++  M   G+K    ++S++LS 
Sbjct: 234 LGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLS- 292

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA-- 177
               GF   G                      +DL         AL+  +E+PER L   
Sbjct: 293 ----GFARNG---------------------EIDL---------ALETLEEMPERGLQPT 318

Query: 178 --TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
             +WN ++    +    ++ L M+++M     +PN ++   ++  C+    L  GK +H 
Sbjct: 319 VNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHX 378

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
              K G V  N++V  +++D YS CGS   A+K F      +   WN +++ Y +   + 
Sbjct: 379 IAXKHGIVG-NVYVEGSVIDMYSKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVE 437

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           DAL L   MQ    +P + ++   L+  +R                 G    +  + S +
Sbjct: 438 DALGLLRSMQKDGWKPDVITYNTILSGHARN----------------GLKTQAXELLSEM 481

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM--VDEGIGL 413
             M  K NV+  +V                L++    SG   +A+++F  M    +G   
Sbjct: 482 VQMGLKPNVVSFNV----------------LISGFQQSGLSYEALKVFRIMQSPSDGCNP 525

Query: 414 DEVTLSTTLKALSVSASANLGSC---------RLLHCCAIKSGFESNIAVSCSLMDAYSR 464
           +EV L+ +++   ++ +  L +C         + +H   +++GFE NI VS +L+D Y++
Sbjct: 526 NEV-LNLSMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEPNIFVSSALVDMYAK 584

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           C  ++ +++VF +I   N V + ++M GY  N    EAL +   M+  GL P  +TF+ +
Sbjct: 585 CHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLGEGLQPSSITFMIL 644

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
              C     ++ G+ +          +      S +IDM  + G +  A+ +   +    
Sbjct: 645 FPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSILDAKSVF-DSEVEK 703

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           D  +W++++ +  VHG   + R    +  ++E
Sbjct: 704 DVPLWNAMISAFSVHG---MARNAFAVFXQME 732



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 132/571 (23%), Positives = 247/571 (43%), Gaps = 60/571 (10%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P + TI ++ P CT +  L     +      +  + N+Y     ID + K G  + A+K+
Sbjct: 352 PNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVIDMYSKCGSYDYAEKV 411

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F +   ++   +N +I+        + AL L   M   G K    T++++LS  +  G  
Sbjct: 412 FXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLK 471

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           T+  ++   ++ +G   N+   + L+  + + G S  AL +F             ++++ 
Sbjct: 472 TQAXELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFR------------IMQSP 519

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +   P+EVL +        + PN ++    +  C+   L  +GK++H + ++ G+ + N
Sbjct: 520 SDGCNPNEVLNL-------SMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGF-EPN 571

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           IFV++ALVD Y+ C  +  A K F  I   + +SWN++++ Y +     +AL+LF  M  
Sbjct: 572 IFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYINNKQPEEALKLFLEMLG 631

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +PS  +F+           + FG+ +HGY  K   D     + SAL DMY KC  I 
Sbjct: 632 EGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIXSALIDMYAKCGSIL 691

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            + +VF+S   + +   N+++++    G  ++A  +F  M   GI  D +T  + L A  
Sbjct: 692 DAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFXQMELLGIXPDHITFVSLLSA-- 749

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
                          CA     E       S+  +Y     +E            +  C 
Sbjct: 750 ---------------CARDGLVEEGWKYFNSMEISYGVAATLE------------HYTCM 782

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
             I+ G    G+  EALD +    Q    PD   +  +L  C      + G+    + K+
Sbjct: 783 VGILGG---AGLLDEALDFIR---QMPYPPDACMWATLLQACRVHSNPEIGE---RAAKA 833

Query: 547 VYGIDADR-QHYSCMIDMLGRAGILDKAEEL 576
           ++ ++ D   +Y  + ++   +G+ D A+ L
Sbjct: 834 LFELEPDNATNYMLLSNIYVSSGMWDFAKNL 864



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 115/547 (21%), Positives = 228/547 (41%), Gaps = 82/547 (14%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+KL DE+P R +  Y  LI    +     +    +  MV  G+        ++L  
Sbjct: 133 LEDARKLLDEIPNRTVPAYAALIRSYCRSEQWDELFSXFRLMVYEGMLPDKYLVPTILKA 192

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS       G  +H  V+      ++++G+ L+  Y   G    +  +F  + ER++ +W
Sbjct: 193 CSAMLLXRIGKMVHGFVIRKSVESDVFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSW 252

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             ++ A+ E    DE   +++ M+ +GV+P+ +S+  ++ G                   
Sbjct: 253 TALISAYMEEGLXDEAKHIFHLMQLDGVKPDLISWSALLSG------------------- 293

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
                   F  N  +D   A  +L E  +     P   V SWN I+S       + DAL+
Sbjct: 294 --------FARNGEIDL--ALETLEEMPER-GLQPT--VNSWNGIISGCVQNGYLEDALD 340

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           +F RM    + P+I +    L   +    +  GK IH    K G   G+V+V+ ++ DMY
Sbjct: 341 MFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIV-GNVYVEGSVIDMY 399

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC   + +  VF  A  ++    N ++ + ++ G ++DA+ +   M  +G   D +T +
Sbjct: 400 SKCGSYDYAEKVFXKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYN 459

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           T L   +                  ++G ++                  EL  ++ +   
Sbjct: 460 TILSGHA------------------RNGLKTQAX---------------ELLSEMVQMGL 486

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVM------------IQRGLIPDKVTFLCVLAG 527
            PNVV F  +++G+ ++G+  EAL +  +M            +   + P+ +T    L  
Sbjct: 487 KPNVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNLSMRPNPITITGALPA 546

Query: 528 CNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
           C    +  +G+ +   ++++  G + +    S ++DM  +   +D A ++  +   G + 
Sbjct: 547 CADLNLWCQGKEIHGYTLRN--GFEPNIFVSSALVDMYAKCHDMDSANKVFFRI-DGRNT 603

Query: 587 MMWSSLL 593
           + W++L+
Sbjct: 604 VSWNALM 610



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 73/319 (22%), Positives = 143/319 (44%), Gaps = 8/319 (2%)

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV-IESSVAVFESAPGRSLECCNSLMTSLL 391
           +QIH  V KL        + + L  +Y K    +E +  + +  P R++    +L+ S  
Sbjct: 100 RQIHARVVKLNALKWKSSIGNKLVVLYCKNQWSLEDARKLLDEIPNRTVPAYAALIRSYC 159

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            S    +    F  MV EG+  D+  + T LKA S      +G  +++H   I+   ES+
Sbjct: 160 RSEQWDELFSXFRLMVYEGMLPDKYLVPTILKACSAMLLXRIG--KMVHGFVIRKSVESD 217

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           + V  +L+  YS CG +  S  VF  +   +VV +T++++ Y   G+  EA  +  +M  
Sbjct: 218 VFVGNALIHFYSNCGDLGSSRSVFHSMQERDVVSWTALISAYMEEGLXDEAKHIFHLMQL 277

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
            G+ PD +++  +L+G   +G +         M    G+      ++ +I    + G L+
Sbjct: 278 DGVKPDLISWSALLSGFARNGEIDLALETLEEMPE-RGLQPTVNSWNGIISGCVQNGYLE 336

Query: 572 KAEELLQQT---PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVS 627
            A ++  +    P   + +  +S+L +C       +G+ +  I  +   V +  V   V 
Sbjct: 337 DALDMFSRMLWYPEDPNIITIASILPACTGLKALRLGKAIHXIAXKHGIVGNVYVEGSVI 396

Query: 628 NFYSEIGEFEVSMQIRETA 646
           + YS+ G ++ + ++   A
Sbjct: 397 DMYSKCGSYDYAEKVFXKA 415


>gi|297814916|ref|XP_002875341.1| binding protein [Arabidopsis lyrata subsp. lyrata]
 gi|297321179|gb|EFH51600.1| binding protein [Arabidopsis lyrata subsp. lyrata]
          Length = 659

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 163/509 (32%), Positives = 270/509 (53%), Gaps = 18/509 (3%)

Query: 167 LFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           LF+   ++ ++ +WN ++          E LR ++ M+   + P   SF   ++ CS  +
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLL 90

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  GKQ H      G+   +IFV++AL+  YS CG L +A+K FD IP  +++SW S++
Sbjct: 91  DIFSGKQTHQQAFVFGY-QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSF------VEFLNFASRTGNVYFGKQIHGYV 339
             Y       DA+ LF  + +         F      V  ++  SR       + IH +V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFV 209

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAV----FESAPGRSLECCNSLMTSLLHSGN 395
            K GFD G V V + L D Y K    E  VAV    F+    +     NS+M+    SG 
Sbjct: 210 IKRGFDRG-VSVGNTLLDAYAKGG--EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGM 266

Query: 396 IKDAVEMFGFMVDEGI-GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             +A ++F  ++ E +   + +TLST L A+S S +  +G C  +H   I+ G E ++ V
Sbjct: 267 SNEAFDVFRRLIKEKVVTFNCITLSTVLLAVSHSGALRIGKC--IHDQVIRMGLEDDVIV 324

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             S++D Y +CG +E +   F+++ + NV  +T+++ GY  +G   +AL++   MI  G+
Sbjct: 325 GTSIIDMYCKCGRVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV 384

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ +TF+ VLA C+H+G+   G   FN+MK  +G++   +HY CM+D+LGRAG L KA 
Sbjct: 385 RPNYITFVSVLAACSHAGLHDVGWHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           +L+Q+     D ++WSSLL +CR+H N  +       L EL+P +   Y  +S+ Y++ G
Sbjct: 445 DLIQKMKMEPDSIIWSSLLAACRIHKNVELAEISVARLFELDPSNCGYYMLLSHIYADSG 504

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            ++   ++R T   R L +  G SL+E+N
Sbjct: 505 RWKDVERVRMTMKNRGLVKPPGFSLLELN 533



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 204/428 (47%), Gaps = 15/428 (3%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           D+ ++N +I+   +     +AL  +  M    +  + S+F   +  CS+      G Q H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALRAFSSMRKLSLYPTRSSFPCAIKACSSLLDIFSGKQTH 99

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            +    G+  ++++ S L+ +Y   G    A  +FDE+P+RN+ +W  M+R +       
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 194 EVLRMYNKMKAEGVEPNGLSF------CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           + + ++  +  E  + +   F        ++  CS        + +HS VIK G+ D  +
Sbjct: 160 DAVSLFKDLLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGF-DRGV 218

Query: 248 FVANALVDFYSACGS--LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
            V N L+D Y+  G   +  A+K FD I   D +S+NSI+S+YA   +  +A ++F R+ 
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRL- 277

Query: 306 LCRKRPSIR--SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +  K  +    +    L   S +G +  GK IH  V ++G +   V V +++ DMY KC 
Sbjct: 278 IKEKVVTFNCITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE-DDVIVGTSIIDMYCKCG 336

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +E++   F+    +++    +++      G+   A+E+F  M+D G+  + +T  + L 
Sbjct: 337 RVETARLAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLA 396

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
           A S +   ++G     +    + G E  +     ++D   R G ++ ++ + +K+   P+
Sbjct: 397 ACSHAGLHDVG-WHWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQKMKMEPD 455

Query: 483 VVCFTSIM 490
            + ++S++
Sbjct: 456 SIIWSSLL 463



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 176/372 (47%), Gaps = 15/372 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +I+ S+  I  +   G L  A+K+FDE+P R++V++  +I G     +   A+ L+ +
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 101 MVSHGIKESASTF------SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
           ++     + A+ F       SV+S CS          IH  V+  GF   + +G+ L+D 
Sbjct: 168 LLIEENDDDATMFLDSMGMVSVISACSRVAAKGLTESIHSFVIKRGFDRGVSVGNTLLDA 227

Query: 155 YMRMGPS--VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNG 211
           Y + G      A  +FD++ +++  ++N ++  + +    +E   ++ ++ K + V  N 
Sbjct: 228 YAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFDVFRRLIKEKVVTFNC 287

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   ++   S    L  GK +H  VI++G  D ++ V  +++D Y  CG +  A+ +FD
Sbjct: 288 ITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED-DVIVGTSIIDMYCKCGRVETARLAFD 346

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF 331
            +   +V SW ++++ Y  +     ALELF  M     RP+  +FV  L   S  G    
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHDV 406

Query: 332 GKQ-IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
           G    +    + G + G  H    + D+ G+   ++ +  + +      +E  + + +SL
Sbjct: 407 GWHWFNAMKGRFGVEPGLEHY-GCMVDLLGRAGFLQKAYDLIQKMK---MEPDSIIWSSL 462

Query: 391 LHSGNIKDAVEM 402
           L +  I   VE+
Sbjct: 463 LAACRIHKNVEL 474


>gi|449450476|ref|XP_004142988.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At2g33680-like [Cucumis sativus]
          Length = 692

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 176/662 (26%), Positives = 325/662 (49%), Gaps = 25/662 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLNSAK 64
           L P+ R+   L   CT    L     + +        + +Y +N  ++ + K G +  AK
Sbjct: 6   LPPQHRSFVDLLLRCTRQKDLQKGKAIHAQLLRTGSFSSVYLTNSLVNLYAKCGSIVKAK 65

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQA--LYLYDEMVSHGIKESASTFSSVLSVCSN 122
            +F+ +  +D+V++N LI+G  +      +  + L+  M +     +  TFS V +  S+
Sbjct: 66  LVFESITNKDVVSWNCLINGYSQKGTVGYSFVMELFQRMRAENTLPNGHTFSGVFTAASS 125

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
           +     G+Q H   +      ++++GS L+++Y ++G  + A  +FD +PERN  +W  +
Sbjct: 126 SPETFGGLQAHALAIKTSNFYDVFVGSSLINMYCKIGCMLDARKVFDTIPERNTVSWATI 185

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  +       E   ++  M+ E    +   +  ++   ++  L+  GKQ+H   +K G 
Sbjct: 186 ISGYAMERMAFEAWELFLLMRREEGAHDKFIYTSVLSALTVPDLVHYGKQIHCLALKNGL 245

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
           + +   V NALV  Y  CG L +A K+F+     D I+W+++++ YA      +AL LF+
Sbjct: 246 LSI-ASVGNALVTMYGKCGCLDDAFKTFELSGDKDDITWSAMITGYAQAGDSHEALNLFY 304

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M L   +PS  +FV  +N  S  G +  GKQIHGY  K G++   ++ +     +  KC
Sbjct: 305 NMHLNGNKPSEFTFVGVINACSDIGALEEGKQIHGYSLKAGYE-CQIYFRKGFDYLKAKC 363

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
             +  +   F+      +    S    +                  E I   E+T+++ L
Sbjct: 364 GSLVDARKGFDYLKEPDIVLWTSCRMQM------------------ERIMPHELTMASVL 405

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
           +A S  A+   G  + +H   IK GF   + +  +L   Y++CG +E  + VF ++PS +
Sbjct: 406 RACSSLAALEQG--KQIHAQTIKYGFSLEVPIGSALSTMYAKCGSLEDGNLVFRRMPSRD 463

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
           ++ + ++++G S+NG G +AL++ E +      PD VTF+ VL+ C+H G+V+ G++ F 
Sbjct: 464 IMTWNAMISGLSQNGEGLKALELFEELRHGTTKPDYVTFVNVLSACSHMGLVERGKVYFR 523

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
            M   +GI    +HY+CM+D+L RAG L + +E ++         +W  LL +CR + N 
Sbjct: 524 MMLDEFGIIPRVEHYACMVDILSRAGKLHETKEFIESATIDHGMCLWRILLGACRNYRNY 583

Query: 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            +G      LMEL   + + Y  +S+ Y+ +G  +   ++R     R + ++ G S IE+
Sbjct: 584 ELGAYAGEKLMELGSQESSAYILLSSIYTALGRSDDVERVRRLMKLRGVNKEPGCSWIEL 643

Query: 663 NS 664
            S
Sbjct: 644 KS 645


>gi|302809936|ref|XP_002986660.1| hypothetical protein SELMODRAFT_124564 [Selaginella moellendorffii]
 gi|300145548|gb|EFJ12223.1| hypothetical protein SELMODRAFT_124564 [Selaginella moellendorffii]
          Length = 691

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 170/618 (27%), Positives = 306/618 (49%), Gaps = 43/618 (6%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES---A 110
           +++ G L  A++L  +    D   +  +IS   +    ++AL L+  M   G   S    
Sbjct: 74  YLRLGSLYDARQLLRQFDLDDTGLWTTMISAFAQRGQHREALDLFHAMQQCGDGSSRPDK 133

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           ++F   +S CS      +G  IH     +     ++ + S LV++Y + G   +A  +F 
Sbjct: 134 TSFVVAISACSETRDLEQGKSIHASFAGVNEIETDVAVASTLVNMYNKCGDLPQACRIFA 193

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            +PE++L TWN+M+ A+     P + L++ ++M+ EG+ P  ++F   + GCSI   L  
Sbjct: 194 RMPEKSLVTWNIMIAAYIHHGFPTKSLQLLDQMQLEGIRPQKVTFINSLNGCSILGKLRP 253

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDVISWNSIVSI 287
           GK +HS   +   +D ++ ++ AL+  YS CGS+ EA+K FD +   V + ISWN++++ 
Sbjct: 254 GKTIHSCAAEQRLIDRDVVLSTALITMYSKCGSVDEARKIFDSMAGDVKNTISWNAMLAG 313

Query: 288 YADYDLIFDALELFFRMQL----------------------------------CRKRPSI 313
           YA      DA++LF  M L                                   R +P  
Sbjct: 314 YAQNSRSSDAIQLFRSMDLEAQCKEEDVVLWTTMLGGYSDRGDHAAALELFREMRIKPDA 373

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            +FV  ++  +  G++  G++I   +   G +     V +AL  M+ +  +++ +  +F+
Sbjct: 374 IAFVAAIDACANAGSIRDGEEILARIRGCGCESDD-RVGTALCYMFAQFGLLDRASQIFD 432

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
               +S    N+++ ++   G   +A+E+F  M+ EG   DE+T +  L      +S  L
Sbjct: 433 RLESKSAISWNAMLGAMAAQGLAIEAMELFRRMLGEGSRPDEITFAAMLDCFVGQSS--L 490

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G  R +H    +SG +  + +  +L++ Y +CG +  S  +F  +   N + + +++  +
Sbjct: 491 GEGRFVHGLIAESGRDRGVFLGTALLNMYGKCGSLADSIAIFANLSHRNTISWNALIAAH 550

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
           + NG   E+LD+ + +   G + + +TF  V+A C H+G+   G      M   +GI   
Sbjct: 551 ASNGRFLESLDLFQELQNEGFLANTITFQSVIAACGHAGLADRGCDYMVLMIEDHGIVPL 610

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
            +HY CMID+LGRAG L +AE+L+ +TP         +LL SCR HG+   GRRVA +LM
Sbjct: 611 PEHYGCMIDLLGRAGWLGEAEDLVLRTPQEERAFNGMALLSSCRTHGDFERGRRVAQMLM 670

Query: 614 ELEPVDFAVYSQVSNFYS 631
           ++ P     Y+ +SN Y+
Sbjct: 671 KIAPGRTGAYALLSNIYA 688



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 114/484 (23%), Positives = 225/484 (46%), Gaps = 46/484 (9%)

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
           EG  IH  ++  G   + ++ S ++ +Y+R+G    A  L  +    +   W  M+ AF 
Sbjct: 47  EGRSIHADLVRDGLDRDEFLASYVIHMYLRLGSLYDARQLLRQFDLDDTGLWTTMISAFA 106

Query: 188 ELSRPDEVLRMYNKMKAEG---VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
           +  +  E L +++ M+  G     P+  SF   +  CS    L++GK +H+    +  ++
Sbjct: 107 QRGQHREALDLFHAMQQCGDGSSRPDKTSFVVAISACSETRDLEQGKSIHASFAGVNEIE 166

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++ VA+ LV+ Y+ CG L +A + F  +P   +++WN +++ Y  +     +L+L  +M
Sbjct: 167 TDVAVASTLVNMYNKCGDLPQACRIFARMPEKSLVTWNIMIAAYIHHGFPTKSLQLLDQM 226

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           QL   RP   +F+  LN  S  G +  GK IH    +       V + +AL  MY KC  
Sbjct: 227 QLEGIRPQKVTFINSLNGCSILGKLRPGKTIHSCAAEQRLIDRDVVLSTALITMYSKCGS 286

Query: 365 IESSVAVFESAPG--RSLECCNSLMTSLLHSGNIKDAVEMFGFM-VDEGIGLDEVTLSTT 421
           ++ +  +F+S  G  ++    N+++     +    DA+++F  M ++     ++V L TT
Sbjct: 287 VDEARKIFDSMAGDVKNTISWNAMLAGYAQNSRSSDAIQLFRSMDLEAQCKEEDVVLWTT 346

Query: 422 L-----------KAL-----------------SVSASANLGSCR-------LLHCCAIKS 446
           +            AL                 ++ A AN GS R        +  C    
Sbjct: 347 MLGGYSDRGDHAAALELFREMRIKPDAIAFVAAIDACANAGSIRDGEEILARIRGC---- 402

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G ES+  V  +L   +++ G ++ + Q+F+++ S + + + +++   +  G+  EA+++ 
Sbjct: 403 GCESDDRVGTALCYMFAQFGLLDRASQIFDRLESKSAISWNAMLGAMAAQGLAIEAMELF 462

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             M+  G  PD++TF  +L        + EG+ V + + +  G D      + +++M G+
Sbjct: 463 RRMLGEGSRPDEITFAAMLDCFVGQSSLGEGRFV-HGLIAESGRDRGVFLGTALLNMYGK 521

Query: 567 AGIL 570
            G L
Sbjct: 522 CGSL 525



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/431 (23%), Positives = 198/431 (45%), Gaps = 39/431 (9%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           + ++  ++  ++ + K G L  A ++F  MP + +VT+N++I+       P ++L L D+
Sbjct: 166 ETDVAVASTLVNMYNKCGDLPQACRIFARMPEKSLVTWNIMIAAYIHHGFPTKSLQLLDQ 225

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH-CRVLSLGFGLNLYIGSPLVDLYMRMG 159
           M   GI+    TF + L+ CS  G    G  IH C         ++ + + L+ +Y + G
Sbjct: 226 MQLEGIRPQKVTFINSLNGCSILGKLRPGKTIHSCAAEQRLIDRDVVLSTALITMYSKCG 285

Query: 160 PSVRALDLFDELPE--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG----------- 206
               A  +FD +    +N  +WN ML  + + SR  + ++++  M  E            
Sbjct: 286 SVDEARKIFDSMAGDVKNTISWNAMLAGYAQNSRSSDAIQLFRSMDLEAQCKEEDVVLWT 345

Query: 207 -----------------------VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
                                  ++P+ ++F   +  C+    + +G+++ + +   G  
Sbjct: 346 TMLGGYSDRGDHAAALELFREMRIKPDAIAFVAAIDACANAGSIRDGEEILARIRGCG-C 404

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           + +  V  AL   ++  G L  A + FD +     ISWN+++   A   L  +A+ELF R
Sbjct: 405 ESDDRVGTALCYMFAQFGLLDRASQIFDRLESKSAISWNAMLGAMAAQGLAIEAMELFRR 464

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M     RP   +F   L+      ++  G+ +HG + + G D G V + +AL +MYGKC 
Sbjct: 465 MLGEGSRPDEITFAAMLDCFVGQSSLGEGRFVHGLIAESGRDRG-VFLGTALLNMYGKCG 523

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +  S+A+F +   R+    N+L+ +   +G   +++++F  + +EG   + +T  + + 
Sbjct: 524 SLADSIAIFANLSHRNTISWNALIAAHASNGRFLESLDLFQELQNEGFLANTITFQSVIA 583

Query: 424 ALSVSASANLG 434
           A   +  A+ G
Sbjct: 584 ACGHAGLADRG 594



 Score =  135 bits (339), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 93/414 (22%), Positives = 194/414 (46%), Gaps = 45/414 (10%)

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L EG+ +H+ +++ G +D + F+A+ ++  Y   GSL +A++      +DD   W +++S
Sbjct: 45  LVEGRSIHADLVRDG-LDRDEFLASYVIHMYLRLGSLYDARQLLRQFDLDDTGLWTTMIS 103

Query: 287 IYADYDLIFDALELFFRMQLC---RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
            +A      +AL+LF  MQ C     RP   SFV  ++  S T ++  GK IH     + 
Sbjct: 104 AFAQRGQHREALDLFHAMQQCGDGSSRPDKTSFVVAISACSETRDLEQGKSIHASFAGVN 163

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                V V S L +MY KC  +  +  +F   P +SL   N ++ + +H G    ++++ 
Sbjct: 164 EIETDVAVASTLVNMYNKCGDLPQACRIFARMPEKSLVTWNIMIAAYIHHGFPTKSLQLL 223

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAY 462
             M  EGI   +VT   +L   S+      G  + +H CA +    + ++ +S +L+  Y
Sbjct: 224 DQMQLEGIRPQKVTFINSLNGCSILGKLRPG--KTIHSCAAEQRLIDRDVVLSTALITMY 281

Query: 463 SRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDM--------------- 505
           S+CG ++ + ++F+ +     N + + +++ GY++N    +A+ +               
Sbjct: 282 SKCGSVDEARKIFDSMAGDVKNTISWNAMLAGYAQNSRSSDAIQLFRSMDLEAQCKEEDV 341

Query: 506 -------------------LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
                              LE+  +  + PD + F+  +  C ++G +++G+ +   ++ 
Sbjct: 342 VLWTTMLGGYSDRGDHAAALELFREMRIKPDAIAFVAAIDACANAGSIRDGEEILARIRG 401

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
             G ++D +  + +  M  + G+LD+A ++  +       + W+++L +    G
Sbjct: 402 C-GCESDDRVGTALCYMFAQFGLLDRASQIFDRLE-SKSAISWNAMLGAMAAQG 453


>gi|359479080|ref|XP_003632211.1| PREDICTED: pentatricopeptide repeat-containing protein At1g53600,
           mitochondrial [Vitis vinifera]
          Length = 744

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 179/652 (27%), Positives = 317/652 (48%), Gaps = 73/652 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP---KQALY 96
           P  N  S    +  + ++GH+  A+K+F++MP R   +YN +I+   +  +P    +A  
Sbjct: 137 PHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTR-SNPMMIGEASK 195

Query: 97  LYDEMVSHGIKESASTFSSVL---------------------SVCSNA---GFYTEGIQI 132
           L+ EM        A+  + +                       VCSNA   G+   G   
Sbjct: 196 LFAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLE 255

Query: 133 HCRVLSLGFGLNLYIG-SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
               +  G G    I  S +VD Y + G    A +LF+ +PERN+ TW  M+    ++  
Sbjct: 256 EATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGC 315

Query: 192 PDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            +    ++ +M+ EG V+ N  +   M   CS      EG Q+H  V ++G+ + ++F+ 
Sbjct: 316 YEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGF-EFDVFLG 374

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NA++  Y     ++EA+K FD +   DV+SWN++++ Y   D + +   LF + Q    +
Sbjct: 375 NAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQ----Q 430

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
             + S+   +   S  G             K+G                        S+ 
Sbjct: 431 KDVISWTTMITGFSNKG-------------KMG-----------------------KSIE 454

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F   P +      ++++  + +G  ++A+  F  M+ + +  + +TLS+ L A +  A+
Sbjct: 455 LFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLAT 514

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
            N G    +H   +K G E ++++  SL+  Y++CG++   HQ+F  I SPN+V F S++
Sbjct: 515 LNQG--LQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMI 572

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            G+++NG G EAL++   M+  G  P+++TFL VL+ C H G++++G   F SMKS+Y I
Sbjct: 573 TGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQI 632

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
           +    HY+C++D+LGRAG LD A +L++  P      +W +LL + R+H    + +  A 
Sbjct: 633 EPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQ 692

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            + +LEP + A Y+ +S  YS  G    S Q+R     + + +  G+S I V
Sbjct: 693 QIFKLEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWIIV 744


>gi|242090705|ref|XP_002441185.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
 gi|241946470|gb|EES19615.1| hypothetical protein SORBIDRAFT_09g021880 [Sorghum bicolor]
          Length = 878

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 174/616 (28%), Positives = 324/616 (52%), Gaps = 10/616 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D ++K   +   +K+F+ MP R++VT+  L++G  +       + L+  M + G+  ++
Sbjct: 146 VDMYMKWHSVVDGRKVFEAMPKRNVVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNS 205

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF+SVLSV ++ G    G ++H + +  G    +++ + L+++Y + G    A  +F  
Sbjct: 206 VTFASVLSVVASQGMVDLGRRVHAQSVKFGCCSTVFVCNSLMNMYAKCGLVEEARVVFCG 265

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  R++ +WN ++          E L++++  ++        ++  +++ C+    L   
Sbjct: 266 METRDMVSWNTLMAGLVLNGHDLEALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLA 325

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIYA 289
           +QLHS V+K G+      V  AL+D YS  G L  A   F  +    +V+SW ++++   
Sbjct: 326 RQLHSSVLKRGFHSYG-NVMTALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCI 384

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
               +  A  LF RM+     P+  ++   L  +  +       QIH  V K  ++  S+
Sbjct: 385 QNGDVPLAAALFSRMREDGVAPNDFTYSTILTASVAS----LPPQIHAQVIKTNYECTSI 440

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V +AL   Y K    E ++++F+    + +   ++++T    +G+   A  +F  M   
Sbjct: 441 -VGTALLASYSKLCNTEEALSIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMH 499

Query: 410 GIGLDEVTLSTTLKA-LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           G+  +E T+S+ + A  S +A  +LG  R  H  +IK      + VS +L+  Y+R G I
Sbjct: 500 GLKPNEFTISSVIDACASPTAGVDLG--RQFHAISIKHRCHDALCVSSALVSMYARKGSI 557

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           E +  +FE+    ++V + S+++GY+++G  ++ALD+   M   G+  D VTFL V+ GC
Sbjct: 558 ESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKALDVFRQMEAEGIEMDGVTFLSVIMGC 617

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
            H+G+V+EGQ  F+SM   YGI    +HY+CM+D+  RAG LD+A  L++        M+
Sbjct: 618 AHAGLVEEGQRYFDSMARDYGITPTMEHYACMVDLYSRAGKLDEAMSLIEGMSFPAGPMV 677

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W +LL +C+VH N  +G+  A  L+ LEP D A Y  +SN YS  G+++   ++R+    
Sbjct: 678 WRTLLGACKVHKNVELGKLAAEKLLSLEPFDSATYVLLSNIYSAAGKWKEKDEVRKLMDT 737

Query: 649 RKLTRDIGHSLIEVNS 664
           +K+ ++ G S I++ +
Sbjct: 738 KKVKKEAGCSWIQIKN 753



 Score =  181 bits (460), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 135/563 (23%), Positives = 266/563 (47%), Gaps = 58/563 (10%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPK-----QAL-YLYDEMVSHGIKESASTFSSV 116
           A++ FDE+P R+ + + L       F H +     QAL +  D    HG +        V
Sbjct: 57  ARQAFDEIPHRNTLDHAL-------FDHARRGSVHQALDHFLDVHRCHGGRVGGGALVGV 109

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           L VC +      G Q+H   +  G    ++ +G+ LVD+YM+    V    +F+ +P+RN
Sbjct: 110 LKVCGSVPDRVLGKQLHGLCIRCGHDRGDVGVGTSLVDMYMKWHSVVDGRKVFEAMPKRN 169

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           + TW  +L  + +     +V+ ++ +M+AEGV PN ++F  ++   +   ++D G+++H+
Sbjct: 170 VVTWTSLLTGYIQDGALSDVMELFFRMRAEGVWPNSVTFASVLSVVASQGMVDLGRRVHA 229

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS--IYADYDL 293
             +K G     +FV N+L++ Y+ CG + EA+  F  +   D++SWN++++  +   +DL
Sbjct: 230 QSVKFGCCS-TVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDL 288

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +AL+LF   +      +  ++   +   +    +   +Q+H  V K GF H   +V +
Sbjct: 289 --EALQLFHDSRSSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGF-HSYGNVMT 345

Query: 354 ALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           AL D Y K   + +++ +F    G +++    +++   + +G++  A  +F  M ++G+ 
Sbjct: 346 ALMDAYSKAGQLGNALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVA 405

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            ++ T ST L A   S          +H   IK+ +E    V  +L+ +YS+  + E + 
Sbjct: 406 PNDFTYSTILTASVASLPPQ------IHAQVIKTNYECTSIVGTALLASYSKLCNTEEAL 459

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            +F+ I   +VV +++++  Y++ G    A ++   M   GL P++ T   V+  C    
Sbjct: 460 SIFKMIDQKDVVSWSAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDAC---- 515

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHY---------------SCMIDMLGRAGILDKAEELL 577
                           G+D  RQ +               S ++ M  R G ++ A+ + 
Sbjct: 516 -----------ASPTAGVDLGRQFHAISIKHRCHDALCVSSALVSMYARKGSIESAQCIF 564

Query: 578 QQTPGGGDCMMWSSLLRSCRVHG 600
           ++     D + W+S+L     HG
Sbjct: 565 ERQT-DRDLVSWNSMLSGYAQHG 586



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 117/441 (26%), Positives = 208/441 (47%), Gaps = 9/441 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++  N  ++ + K G +  A+ +F  M  RDMV++N L++G     H  +AL L+ +  
Sbjct: 239 TVFVCNSLMNMYAKCGLVEEARVVFCGMETRDMVSWNTLMAGLVLNGHDLEALQLFHDSR 298

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           S     + ST+++V+ +C+N        Q+H  VL  GF     + + L+D Y + G   
Sbjct: 299 SSITMLTQSTYATVIKLCANIKQLGLARQLHSSVLKRGFHSYGNVMTALMDAYSKAGQLG 358

Query: 163 RALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            ALD+F  +   +N+ +W  M+    +         ++++M+ +GV PN  ++  ++   
Sbjct: 359 NALDIFLLMSGSQNVVSWTAMINGCIQNGDVPLAAALFSRMREDGVAPNDFTYSTILTA- 417

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S+  L     Q+H+ VIK  +   +I V  AL+  YS   +  EA   F  I   DV+SW
Sbjct: 418 SVASL---PPQIHAQVIKTNYECTSI-VGTALLASYSKLCNTEEALSIFKMIDQKDVVSW 473

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGYVT 340
           +++++ YA       A  +F +M +   +P+  +    ++  AS T  V  G+Q H    
Sbjct: 474 SAMLTCYAQAGDSDGATNIFIKMTMHGLKPNEFTISSVIDACASPTAGVDLGRQFHAISI 533

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K    H ++ V SAL  MY +   IES+  +FE    R L   NS+++     G  + A+
Sbjct: 534 KHRC-HDALCVSSALVSMYARKGSIESAQCIFERQTDRDLVSWNSMLSGYAQHGYSQKAL 592

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           ++F  M  EGI +D VT  + +   + +     G  R     A   G    +     ++D
Sbjct: 593 DVFRQMEAEGIEMDGVTFLSVIMGCAHAGLVEEGQ-RYFDSMARDYGITPTMEHYACMVD 651

Query: 461 AYSRCGHIELSHQVFEKIPSP 481
            YSR G ++ +  + E +  P
Sbjct: 652 LYSRAGKLDEAMSLIEGMSFP 672


>gi|296084001|emb|CBI24389.3| unnamed protein product [Vitis vinifera]
          Length = 665

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 179/652 (27%), Positives = 317/652 (48%), Gaps = 73/652 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP---KQALY 96
           P  N  S    +  + ++GH+  A+K+F++MP R   +YN +I+   +  +P    +A  
Sbjct: 58  PHKNAISWTAMLTAYYENGHIAKARKMFEKMPQRTTASYNAMITAYTR-SNPMMIGEASK 116

Query: 97  LYDEMVSHGIKESASTFSSVLS---------------------VCSNA---GFYTEGIQI 132
           L+ EM        A+  + +                       VCSNA   G+   G   
Sbjct: 117 LFAEMRERNSISYAAMITGLARAGMVDNAEELYLETPVEWRDPVCSNALISGYLKVGRLE 176

Query: 133 HCRVLSLGFGLNLYIG-SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
               +  G G    I  S +VD Y + G    A +LF+ +PERN+ TW  M+    ++  
Sbjct: 177 EATRIFEGMGERDVISWSSMVDGYCKKGKIGHARELFERMPERNVVTWTAMIDGHMKMGC 236

Query: 192 PDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            +    ++ +M+ EG V+ N  +   M   CS      EG Q+H  V ++G+ + ++F+ 
Sbjct: 237 YEVGFGLFLRMRKEGFVKVNPTTLTVMFEACSEFGEYKEGIQMHGLVSRMGF-EFDVFLG 295

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NA++  Y     ++EA+K FD +   DV+SWN++++ Y   D + +   LF + Q    +
Sbjct: 296 NAIIIMYCRFSFVVEARKIFDMMNRKDVVSWNALIAGYVQNDEVEEGYVLFEKTQ----Q 351

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
             + S+   +   S  G             K+G                        S+ 
Sbjct: 352 KDVISWTTMITGFSNKG-------------KMG-----------------------KSIE 375

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +F   P +      ++++  + +G  ++A+  F  M+ + +  + +TLS+ L A +  A+
Sbjct: 376 LFRMMPKQDDIAWTAVISGFVGNGEYEEAIYWFIEMLRKVVRPNPLTLSSVLSASAGLAT 435

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
            N G    +H   +K G E ++++  SL+  Y++CG++   HQ+F  I SPN+V F S++
Sbjct: 436 LNQG--LQIHTLVVKMGMEFDLSIQNSLVSMYTKCGNVADGHQIFTSINSPNIVSFNSMI 493

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            G+++NG G EAL++   M+  G  P+++TFL VL+ C H G++++G   F SMKS+Y I
Sbjct: 494 TGFAQNGFGEEALELFHKMLNEGQKPNEITFLGVLSACTHVGLLEQGWNYFKSMKSLYQI 553

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
           +    HY+C++D+LGRAG LD A +L++  P      +W +LL + R+H    + +  A 
Sbjct: 554 EPGPHHYACIVDLLGRAGFLDDAIDLIRSMPCEPHSGVWGALLGASRIHLRLDVAKLAAQ 613

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            + +LEP + A Y+ +S  YS  G    S Q+R     + + +  G+S I V
Sbjct: 614 QIFKLEPDNAAPYAVLSFLYSSAGRNRDSEQVRMAQGLKGVKKSAGYSWIIV 665


>gi|15226737|ref|NP_181604.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75276036|sp|Q7XJN6.1|PP197_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At2g40720
 gi|330254774|gb|AEC09868.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 860

 Score =  267 bits (683), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 178/619 (28%), Positives = 323/619 (52%), Gaps = 13/619 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
           ID + K G    A ++F E+  + ++V +N++I G G     + +L LY    ++ +K  
Sbjct: 212 IDMYFKFGLSIDAWRVFVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLV 271

Query: 110 ASTFSSVLSVCS---NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           +++F+  L  CS   N+GF   G QIHC V+ +G   + Y+ + L+ +Y + G    A  
Sbjct: 272 STSFTGALGACSQSENSGF---GRQIHCDVVKMGLHNDPYVCTSLLSMYSKCGMVGEAET 328

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F  + ++ L  WN M+ A+ E       L ++  M+ + V P+  +   ++  CS+  L
Sbjct: 329 VFSCVVDKRLEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGL 388

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
            + GK +H+ + K   +     + +AL+  YS CG   +A   F  +   D+++W S++S
Sbjct: 389 YNYGKSVHAELFKRP-IQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLIS 447

Query: 287 IYADYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
                    +AL++F  M+      +P         N  +    + FG Q+HG + K G 
Sbjct: 448 GLCKNGKFKEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGL 507

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              +V V S+L D+Y KC + E ++ VF S    ++   NS+++    +   + ++++F 
Sbjct: 508 VL-NVFVGSSLIDLYSKCGLPEMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFN 566

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+ +GI  D V++++ L A+S +AS   G  + LH   ++ G  S+  +  +L+D Y +
Sbjct: 567 LMLSQGIFPDSVSITSVLVAISSTASLLKG--KSLHGYTLRLGIPSDTHLKNALIDMYVK 624

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG  + +  +F+K+   +++ +  ++ GY  +G    AL + + M + G  PD VTFL +
Sbjct: 625 CGFSKYAENIFKKMQHKSLITWNLMIYGYGSHGDCITALSLFDEMKKAGESPDDVTFLSL 684

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           ++ CNHSG V+EG+ +F  MK  YGI+ + +HY+ M+D+LGRAG+L++A   ++  P   
Sbjct: 685 ISACNHSGFVEEGKNIFEFMKQDYGIEPNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEA 744

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           D  +W  LL + R H N  +G   A  L+ +EP   + Y Q+ N Y E G    + ++  
Sbjct: 745 DSSIWLCLLSASRTHHNVELGILSAEKLLRMEPERGSTYVQLINLYMEAGLKNEAAKLLG 804

Query: 645 TALARKLTRDIGHSLIEVN 663
               + L +  G S IEV+
Sbjct: 805 LMKEKGLHKQPGCSWIEVS 823



 Score =  216 bits (551), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 162/613 (26%), Positives = 300/613 (48%), Gaps = 21/613 (3%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
           S+     V T  +L   C+++  LS    +  S      + + + +   ++ +VK G L+
Sbjct: 53  SSPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSLVNMYVKCGFLD 112

Query: 62  SAKKLFDE-------MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            A ++FD        + ARD+  +N +I G  KFR  K+ +  +  M+  G++  A + S
Sbjct: 113 YAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLVFGVRPDAFSLS 172

Query: 115 SVLSVCSNAGFY--TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            V+SV    G +   EG QIH  +L      + ++ + L+D+Y + G S+ A  +F E+ 
Sbjct: 173 IVVSVMCKEGNFRREEGKQIHGFMLRNSLDTDSFLKTALIDMYFKFGLSIDAWRVFVEIE 232

Query: 173 ER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           ++ N+  WN+M+  F      +  L +Y   K   V+    SF   +  CS       G+
Sbjct: 233 DKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGALGACSQSENSGFGR 292

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           Q+H  V+K+G +  + +V  +L+  YS CG + EA+  F  +    +  WN++V+ YA+ 
Sbjct: 293 QIHCDVVKMG-LHNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKRLEIWNAMVAAYAEN 351

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
           D  + AL+LF  M+     P   +    ++  S  G   +GK +H  + K      S  +
Sbjct: 352 DYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYGKSVHAELFKRPIQSTST-I 410

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
           +SAL  +Y KC     +  VF+S   + +    SL++ L  +G  K+A+++FG M D+  
Sbjct: 411 ESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKFKEALKVFGDMKDDD- 469

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
             D +   + +     +A A L + R    +H   IK+G   N+ V  SL+D YS+CG  
Sbjct: 470 --DSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLP 527

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           E++ +VF  + + N+V + S+++ YSRN +   ++D+  +M+ +G+ PD V+   VL   
Sbjct: 528 EMALKVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAI 587

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           + +  + +G+ +      + GI +D    + +IDM  + G    AE + ++       + 
Sbjct: 588 SSTASLLKGKSLHGYTLRL-GIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQ-HKSLIT 645

Query: 589 WSSLLRSCRVHGN 601
           W+ ++     HG+
Sbjct: 646 WNLMIYGYGSHGD 658



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 139/524 (26%), Positives = 247/524 (47%), Gaps = 24/524 (4%)

Query: 93  QALYLYDEM-VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           QAL+LY +   S     S  TF S+L  CS     + G  IH  V+ LG+  + +I + L
Sbjct: 42  QALHLYSKHDGSSPFWTSVFTFPSLLKACSALTNLSYGKTIHGSVVVLGWRYDPFIATSL 101

Query: 152 VDLYMRMGPSVRALDLFDELPE-------RNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           V++Y++ G    A+ +FD   +       R++  WN M+  + +  R  E +  + +M  
Sbjct: 102 VNMYVKCGFLDYAVQVFDGWSQSQSGVSARDVTVWNSMIDGYFKFRRFKEGVGCFRRMLV 161

Query: 205 EGVEPNGLSFCYMVR-GCSIGML-LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
            GV P+  S   +V   C  G    +EGKQ+H  +++   +D + F+  AL+D Y   G 
Sbjct: 162 FGVRPDAFSLSIVVSVMCKEGNFRREEGKQIHGFMLRNS-LDTDSFLKTALIDMYFKFGL 220

Query: 263 LIEAKKSFDFIPVDD---VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319
            I+A +   F+ ++D   V+ WN ++  +    +   +L+L+   +    +    SF   
Sbjct: 221 SIDAWRV--FVEIEDKSNVVLWNVMIVGFGGSGICESSLDLYMLAKNNSVKLVSTSFTGA 278

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L   S++ N  FG+QIH  V K+G  H   +V ++L  MY KC ++  +  VF     + 
Sbjct: 279 LGACSQSENSGFGRQIHCDVVKMGL-HNDPYVCTSLLSMYSKCGMVGEAETVFSCVVDKR 337

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           LE  N+++ +   +     A+++FGFM  + +  D  TLS  +   SV    N G  + +
Sbjct: 338 LEIWNAMVAAYAENDYGYSALDLFGFMRQKSVLPDSFTLSNVISCCSVLGLYNYG--KSV 395

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H    K   +S   +  +L+  YS+CG    ++ VF+ +   ++V + S+++G  +NG  
Sbjct: 396 HAELFKRPIQSTSTIESALLTLYSKCGCDPDAYLVFKSMEEKDMVAWGSLISGLCKNGKF 455

Query: 500 REALDMLEVMI--QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
           +EAL +   M      L PD      V   C     ++ G  V  SM    G+  +    
Sbjct: 456 KEALKVFGDMKDDDDSLKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKT-GLVLNVFVG 514

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           S +ID+  + G+ + A ++        + + W+S++ SC    N
Sbjct: 515 SSLIDLYSKCGLPEMALKVFTSMS-TENMVAWNSMI-SCYSRNN 556



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 79/327 (24%), Positives = 155/327 (47%), Gaps = 9/327 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           L P    +T++   C  +  L   L +  S  +    LN++  +  ID + K G    A 
Sbjct: 472 LKPDSDIMTSVTNACAGLEALRFGLQVHGSMIKTGLVLNVFVGSSLIDLYSKCGLPEMAL 531

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K+F  M   +MV +N +IS   +   P+ ++ L++ M+S GI   + + +SVL   S+  
Sbjct: 532 KVFTSMSTENMVAWNSMISCYSRNNLPELSIDLFNLMLSQGIFPDSVSITSVLVAISSTA 591

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
              +G  +H   L LG   + ++ + L+D+Y++ G S  A ++F ++  ++L TWNLM+ 
Sbjct: 592 SLLKGKSLHGYTLRLGIPSDTHLKNALIDMYVKCGFSKYAENIFKKMQHKSLITWNLMIY 651

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            +         L ++++MK  G  P+ ++F  ++  C+    ++EGK +   + +   ++
Sbjct: 652 GYGSHGDCITALSLFDEMKKAGESPDDVTFLSLISACNHSGFVEEGKNIFEFMKQDYGIE 711

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---IYADYDLIFDALEL 300
            N+     +VD     G L EA      +P++ D   W  ++S    + + +L   + E 
Sbjct: 712 PNMEHYANMVDLLGRAGLLEEAYSFIKAMPIEADSSIWLCLLSASRTHHNVELGILSAEK 771

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTG 327
             RM+  R      ++V+ +N     G
Sbjct: 772 LLRMEPERG----STYVQLINLYMEAG 794


>gi|356564895|ref|XP_003550682.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g30700-like [Glycine max]
          Length = 778

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 168/624 (26%), Positives = 315/624 (50%), Gaps = 9/624 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q ++ +  +        G    A+ LF  +P  D+  +N+LI G   F     ++  Y  
Sbjct: 37  QHDLATVTKLTQKLFDVGATRHARALFFSVPKPDIFLFNVLIKGFS-FSPDASSISFYTH 95

Query: 101 MVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           ++ +  +     T++  +S   +      G+ +H   +  GF  NL++ S LVDLY +  
Sbjct: 96  LLKNTTLSPDNFTYAFAISASPDDNL---GMCLHAHAVVDGFDSNLFVASALVDLYCKFS 152

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD++P+R+   WN M+         D+ ++++  M A+GV  +  +   ++ 
Sbjct: 153 RVAYARKVFDKMPDRDTVLWNTMITGLVRNCCYDDSVQVFKDMVAQGVRLDSTTVATVLP 212

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +    +  G  +    +KLG+   + +V   L+  +S C  +  A+  F  I   D++
Sbjct: 213 AVAEMQEVKVGMGIQCLALKLGF-HFDDYVLTGLISVFSKCEDVDTARLLFGMIRKPDLV 271

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           S+N+++S ++       A++ F  + +  +R S  + V  +  +S  G+++    I G+ 
Sbjct: 272 SYNALISGFSCNGETECAVKYFRELLVSGQRVSSSTMVGLIPVSSPFGHLHLACCIQGFC 331

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G       V +ALT +Y + N I+ +  +F+ +  +++   N++++    SG  + A
Sbjct: 332 VKSG-TILQPSVSTALTTIYSRLNEIDLARQLFDESSEKTVAAWNAMISGYAQSGLTEMA 390

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  M+      + VT+++ L A +   + + G  + +H        E NI VS +L+
Sbjct: 391 ISLFQEMMTTEFTPNPVTITSILSACAQLGALSFG--KSVHQLIKSKNLEQNIYVSTALI 448

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y++CG+I  + Q+F+     N V + +++ GY  +G G EAL +   M+  G  P  V
Sbjct: 449 DMYAKCGNISEASQLFDLTSEKNTVTWNTMIFGYGLHGYGDEALKLFNEMLHLGFQPSSV 508

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TFL VL  C+H+G+V+EG  +F++M + Y I+   +HY+CM+D+LGRAG L+KA E +++
Sbjct: 509 TFLSVLYACSHAGLVREGDEIFHAMVNKYRIEPLAEHYACMVDILGRAGQLEKALEFIRK 568

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P      +W +LL +C +H +  + R  +  L EL+P +   Y  +SN YS    F  +
Sbjct: 569 MPVEPGPAVWGTLLGACMIHKDTNLARVASERLFELDPGNVGYYVLLSNIYSVERNFPKA 628

Query: 640 MQIRETALARKLTRDIGHSLIEVN 663
             +RE    R L++  G +LIEVN
Sbjct: 629 ASVREAVKKRNLSKTPGCTLIEVN 652


>gi|255574235|ref|XP_002528032.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223532562|gb|EEF34350.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 730

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 166/568 (29%), Positives = 290/568 (51%), Gaps = 50/568 (8%)

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           ++G Q+H  ++SLGF  +  I   LV  Y        A  + +     +   WNL++ ++
Sbjct: 110 SQGKQLHTLIISLGFEQHPIIVPKLVTFYTNFDLLADAHTITENSNILHPLPWNLLISSY 169

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK--LGWVD 244
                  E L  Y +M  +G+ P+  ++  +++ C   + +  GK+LH+ +    LGW  
Sbjct: 170 VRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHASINASCLGW-- 227

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            N+FV N+LV  Y+  G L  A+  F+ +   D +SWN+++S YA   +  +A ELF +M
Sbjct: 228 -NLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKM 286

Query: 305 QL----------------CRKRPSIRSFVEFLNFA-------------------SRTGNV 329
           ++                C +  +    +E L+                     S  G +
Sbjct: 287 RVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAI 346

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
             G++IHG   +  +D G  +V++AL  MY +C  +  +  +F+S   +++   NS+++ 
Sbjct: 347 KLGREIHGSAIRSFYD-GVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSG 405

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK-SGF 448
             H    ++A  +F  M+  GI  + VT+++ L     +  ANL   +  HC  ++ +GF
Sbjct: 406 YTHMDRSEEASFLFREMLLSGIEPNYVTIASILPL--CARVANLQHGKEFHCYILRRAGF 463

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           +  + +  SL+D Y+R G +  + ++F+ I   + V +TS++ GY   G GREAL + + 
Sbjct: 464 KDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDE 523

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M +R + PD VT + VL+ C+HSG+V EG  +F  M S YGI    +H++CM+D+ GRAG
Sbjct: 524 MKKRHIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRLEHFACMVDLFGRAG 583

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
           +L KA+E++ + P      MW++LL +CR+HGN  IG   A  L+E+ P +   Y  ++N
Sbjct: 584 LLHKAKEMITRMPYRPSSAMWATLLGACRIHGNAEIGEWAAEKLLEMRPENSGYYVLIAN 643

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIG 656
            Y+  G +       + A  R   RD+G
Sbjct: 644 MYAAAGCWS------KLAKVRTYMRDLG 665



 Score =  137 bits (344), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 110/450 (24%), Positives = 190/450 (42%), Gaps = 36/450 (8%)

Query: 76  VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135
           + +NLLIS   +     +AL  Y +M   GI+    T+ SVL  C        G ++H  
Sbjct: 160 LPWNLLISSYVRNGLHGEALSAYKQMTHKGIRPDKFTYPSVLKACGEKLDIAFGKKLHAS 219

Query: 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
           + +   G NL++ + LV +Y + G    A  LF+ + ER+  +WN M+  +       E 
Sbjct: 220 INASCLGWNLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEA 279

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV------------------ 237
             ++ KM+ EG+E N +++  +  GC      +E  +L SH+                  
Sbjct: 280 FELFGKMRVEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGA 339

Query: 238 ------IKLG----------WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                 IKLG          + D    V NAL+  YS C  L  A   F      ++I+W
Sbjct: 340 CSHIGAIKLGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITW 399

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           NS++S Y   D   +A  LF  M L    P+  +    L   +R  N+  GK+ H Y+ +
Sbjct: 400 NSMLSGYTHMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILR 459

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                  + + ++L DMY +   +  +  +F+S   R      SL+      G  ++A++
Sbjct: 460 RAGFKDYLLLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALK 519

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M    I  D VT+   L A S S     G  +L        G    +     ++D 
Sbjct: 520 LFDEMKKRHIKPDHVTMVAVLSACSHSGLVTEG-IKLFELMPSAYGIIPRLEHFACMVDL 578

Query: 462 YSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
           + R G +  + ++  ++P  P+   + +++
Sbjct: 579 FGRAGLLHKAKEMITRMPYRPSSAMWATLL 608



 Score =  122 bits (307), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 90/378 (23%), Positives = 176/378 (46%), Gaps = 49/378 (12%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  N  +  + K+G L++A+ LF+ M  RD V++N +ISG       K+A  L+ +M 
Sbjct: 228 NLFVHNSLVSMYAKTGELSTARCLFENMLERDDVSWNTMISGYASKGMWKEAFELFGKMR 287

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQI--HCRVLS---------LGFGLNLYIGS-- 149
             GI+ +  T++++   C  +G + E +++  H R            +G G   +IG+  
Sbjct: 288 VEGIELNIITWNTIAGGCVQSGNFEEALELLSHMRSYGIDMDSVATIIGLGACSHIGAIK 347

Query: 150 ----------------------PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
                                  L+ +Y R      A +LF     +N+ TWN ML  + 
Sbjct: 348 LGREIHGSAIRSFYDGVDNVKNALITMYSRCKYLRHAYNLFQSTRTKNIITWNSMLSGYT 407

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
            + R +E   ++ +M   G+EPN ++   ++  C+    L  GK+ H ++++       +
Sbjct: 408 HMDRSEEASFLFREMLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYL 467

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            + N+LVD Y+  G ++EAK+ FD I   D +++ S+++ Y       +AL+LF  M+  
Sbjct: 468 LLWNSLVDMYARSGKVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKR 527

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQI-------HGYVTKLGFDHGSVHVQSALTDMYG 360
             +P   + V  L+  S +G V  G ++       +G + +L  +H      + + D++G
Sbjct: 528 HIKPDHVTMVAVLSACSHSGLVTEGIKLFELMPSAYGIIPRL--EH-----FACMVDLFG 580

Query: 361 KCNVIESSVAVFESAPGR 378
           +  ++  +  +    P R
Sbjct: 581 RAGLLHKAKEMITRMPYR 598



 Score = 85.5 bits (210), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 61/190 (32%), Positives = 94/190 (49%), Gaps = 6/190 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYS--SNRTIDDFVKSG 58
           ML + + P   TI ++ P C  +  L        Y         Y    N  +D + +SG
Sbjct: 422 MLLSGIEPNYVTIASILPLCARVANLQHGKEFHCYILRRAGFKDYLLLWNSLVDMYARSG 481

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            +  AK+LFD +  RD VTY  LI+G G     ++AL L+DEM    IK    T  +VLS
Sbjct: 482 KVLEAKRLFDSISRRDEVTYTSLIAGYGIQGEGREALKLFDEMKKRHIKPDHVTMVAVLS 541

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELPER-N 175
            CS++G  TEGI++   ++   +G+   L   + +VDL+ R G   +A ++   +P R +
Sbjct: 542 ACSHSGLVTEGIKLF-ELMPSAYGIIPRLEHFACMVDLFGRAGLLHKAKEMITRMPYRPS 600

Query: 176 LATWNLMLRA 185
            A W  +L A
Sbjct: 601 SAMWATLLGA 610


>gi|297737195|emb|CBI26396.3| unnamed protein product [Vitis vinifera]
          Length = 667

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 157/563 (27%), Positives = 296/563 (52%), Gaps = 15/563 (2%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G+  S  TF  VL  C+      +  ++H  +L  GF  ++++ + LVD+Y +      A
Sbjct: 23  GVHGSEFTFPFVLKACAKLPSLEDATKLHSHILLTGFQAHVFVQTALVDVYSKCCCFHSA 82

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD++P ++L +WN ++ A C     D+   +  +M+  G+E +  +F   +  CS  
Sbjct: 83  RLVFDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCS-- 140

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L +G  +H ++ KLG +D+++ +AN+++  Y     +  A   F  +    ++SW  I
Sbjct: 141 --LPQGLSIHGYITKLG-LDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTII 197

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  Y     +     +F +M+     P    FV  ++    +GN+     +H  + K GF
Sbjct: 198 LGGYLSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGF 257

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           DH    + + L  MY KC  + S+  VF++   +S+    S+++     G   +A+ +F 
Sbjct: 258 DHKDP-IDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFN 316

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDA 461
            ++      +E+TL+T L     SA A +GS R+   +    + +G  S++ V  SL+  
Sbjct: 317 MLLRTASRPNELTLATVL-----SACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHM 371

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR-GLIPDKVT 520
           + +CG I+ +  +FE+IP+ ++  +++++NGY+ +GMG+EAL++   M    G+ PD + 
Sbjct: 372 FCKCGSIKKAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIV 431

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           +  VL  C+HSG++++G   F SM+  +GI+   QHYSC++D+LGRAG ++ A   +Q+ 
Sbjct: 432 YTSVLLACSHSGLIEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEM 491

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P      +W+  L +C  H N  +G   A  L +LEP     +  ++N Y+ +G+++ + 
Sbjct: 492 PVLVQARVWAPFLSACYTHHNLELGEFAAKNLFDLEPRSTGNFVLMTNLYTSMGKWKEAA 551

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
           + R    AR L ++ G S IE++
Sbjct: 552 KARSIINARGLVKEPGWSQIEID 574



 Score =  175 bits (443), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 121/474 (25%), Positives = 232/474 (48%), Gaps = 13/474 (2%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
            P V       P+      L S +LL  +     Q +++     +D + K    +SA+ +
Sbjct: 31  FPFVLKACAKLPSLEDATKLHSHILLTGF-----QAHVFVQTALVDVYSKCCCFHSARLV 85

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD+MP + +V++N +IS   +  H  Q+  +  +M   G++ S++TF+  L+ CS     
Sbjct: 86  FDQMPIKSLVSWNSIISAHCRDFHIDQSFGILKQMQLLGLELSSATFTGFLASCS----L 141

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            +G+ IH  +  LG  L+L + + ++ +Y+R+     AL +F  L ++++ +W ++L  +
Sbjct: 142 PQGLSIHGYITKLGLDLHLPLANSIMSMYIRLNQIDGALSVFYTLHQKSIVSWTIILGGY 201

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                  +V  ++N+M+ + V P+ + F  ++  C +   L     +HS ++K G+ D  
Sbjct: 202 LSAGDVAKVFAVFNQMRCQCVGPDSIVFVNLISCCKLSGNLLLAMLVHSLLLKSGF-DHK 260

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             + N LV  Y+ C  L+ A++ FD +    V  W S++S YA +    +AL LF  +  
Sbjct: 261 DPIDNLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLR 320

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              RP+  +    L+  +  G++  G++I  Y+   G     + VQ++L  M+ KC  I+
Sbjct: 321 TASRPNELTLATVLSACAEMGSLRMGEEIEQYILLNGLG-SDLRVQTSLIHMFCKCGSIK 379

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLDEVTLSTTLKAL 425
            + A+FE  P + L   ++++      G  K+A+ +F  M +E GI  D +  ++ L A 
Sbjct: 380 KAQALFERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLAC 439

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           S S     G  +         G E +I     L+D   R G++EL+ +  +++P
Sbjct: 440 SHSGLIEDG-LKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMP 492



 Score = 99.4 bits (246), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 57/229 (24%), Positives = 121/229 (52%), Gaps = 1/229 (0%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  + K   L SA+++FD +  + +  +  +ISG  +F +P +AL+L++ ++    +
Sbjct: 265 NLLVAMYAKCKDLVSARRVFDAVHEKSVFLWTSMISGYAQFGYPNEALHLFNMLLRTASR 324

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  T ++VLS C+  G    G +I   +L  G G +L + + L+ ++ + G   +A  L
Sbjct: 325 PNELTLATVLSACAEMGSLRMGEEIEQYILLNGLGSDLRVQTSLIHMFCKCGSIKKAQAL 384

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGML 226
           F+ +P ++LA W+ M+  +       E L +++KM+ E G++P+ + +  ++  CS   L
Sbjct: 385 FERIPNKDLAVWSAMINGYAVHGMGKEALNLFHKMQNEVGIKPDAIVYTSVLLACSHSGL 444

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           +++G +    + K   ++ +I   + LVD     G +  A ++   +PV
Sbjct: 445 IEDGLKYFRSMQKDFGIEPSIQHYSCLVDLLGRAGYVELALRTIQEMPV 493


>gi|356522600|ref|XP_003529934.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Glycine max]
          Length = 644

 Score =  267 bits (682), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 167/558 (29%), Positives = 293/558 (52%), Gaps = 11/558 (1%)

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           ++ L V +      EG Q+H  ++  GF   L + + ++ +Y++   +  A  LF+EL  
Sbjct: 54  ANALKVSAKRALLPEGKQLHAHLIKFGFCHVLSLQNQILGVYLKCTEADDAEKLFEELSV 113

Query: 174 RNLATWNLMLRAFCEL-------SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           RN+ +WN+++R            S   +    + +M  E V P+  +F  +   C     
Sbjct: 114 RNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKRMLLELVVPDSTTFNGLFGVCVKFHD 173

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +D G QLH   +KLG +D++ FV + LVD Y+ CG +  A++ F  +   D++ WN ++S
Sbjct: 174 IDMGFQLHCFAVKLG-LDLDCFVGSVLVDLYAQCGLVENARRVFLVVQHRDLVVWNVMIS 232

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            YA   L  +A  +F  M+         +F   L+         FGKQ+HG++ +L FD 
Sbjct: 233 CYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSICDSLEYYDFGKQVHGHILRLSFD- 291

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V V SAL +MY K   I  +  +F++   R++   N+++    +     + +++   M
Sbjct: 292 SDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREM 351

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
           + EG   DE+T+S+T+ +L    SA +      H  A+KS F+  ++V+ SL+ AYS+CG
Sbjct: 352 LREGFSPDELTISSTI-SLCGYVSA-ITETMQAHAFAVKSSFQEFLSVANSLISAYSKCG 409

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            I  + + F     P++V +TS++N Y+ +G+ +EA ++ E M+  G+IPD+++FL VL+
Sbjct: 410 SITSACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLS 469

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H G+V +G   FN M SVY I  D  HY+C++D+LGR G++++A E L+  P   + 
Sbjct: 470 ACSHCGLVTKGLHYFNLMTSVYKIVPDSGHYTCLVDLLGRYGLINEAFEFLRSMPMEAES 529

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
               + + SC +H N  + +  A  L  +EP     Y+ +SN Y+    +    ++R   
Sbjct: 530 NTLGAFVASCNLHANIGLAKWAAEKLFTIEPEKNVNYAVMSNIYASHRHWSDVERVRRMM 589

Query: 647 LARKLTRDIGHSLIEVNS 664
             +   R  G S IE+ +
Sbjct: 590 GNKCDARVPGCSWIEITN 607



 Score =  157 bits (398), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 122/493 (24%), Positives = 218/493 (44%), Gaps = 52/493 (10%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFR----HPKQALYLYDE 100
           N+ +  ++K    + A+KLF+E+  R++V++N+LI G   CG       + +Q    +  
Sbjct: 89  NQILGVYLKCTEADDAEKLFEELSVRNVVSWNILIRGIVGCGDANENDSNQQQCFSYFKR 148

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+   +   ++TF+ +  VC        G Q+HC  + LG  L+ ++GS LVDLY + G 
Sbjct: 149 MLLELVVPDSTTFNGLFGVCVKFHDIDMGFQLHCFAVKLGLDLDCFVGSVLVDLYAQCGL 208

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F  +  R+L  WN+M+  +     P+E   M+N M+ +G   +  +F  ++  
Sbjct: 209 VENARRVFLVVQHRDLVVWNVMISCYALNCLPEEAFVMFNLMRWDGANGDEFTFSNLLSI 268

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C      D GKQ+H H+++L + D ++ VA+AL++ Y+   ++++A + FD + + +V++
Sbjct: 269 CDSLEYYDFGKQVHGHILRLSF-DSDVLVASALINMYAKNENIVDAHRLFDNMVIRNVVA 327

Query: 281 WNSIVSIYADY---DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           WN+I+  Y +    + +   L    R        +I S +    + S         Q H 
Sbjct: 328 WNTIIVGYGNRREGNEVMKLLREMLREGFSPDELTISSTISLCGYVSAITETM---QAHA 384

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           +  K  F    + V ++L   Y KC  I S+   F       L    SL+ +    G  K
Sbjct: 385 FAVKSSFQE-FLSVANSLISAYSKCGSITSACKCFRLTREPDLVSWTSLINAYAFHGLAK 443

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A E+F  M+  GI  D+++    L A S             HC  +  G          
Sbjct: 444 EATEVFEKMLSCGIIPDQISFLGVLSACS-------------HCGLVTKGLH-------- 482

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
                    +  L   V++ +P S +  C   ++  Y   G+  EA + L  M       
Sbjct: 483 ---------YFNLMTSVYKIVPDSGHYTCLVDLLGRY---GLINEAFEFLRSMPMEA--- 527

Query: 517 DKVTFLCVLAGCN 529
           +  T    +A CN
Sbjct: 528 ESNTLGAFVASCN 540



 Score = 82.4 bits (202), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 52/189 (27%), Positives = 86/189 (45%), Gaps = 9/189 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +N+Y+ N  I D         A +LFD M  R++V +N +I G G  R   + + L  EM
Sbjct: 301 INMYAKNENIVD---------AHRLFDNMVIRNVVAWNTIIVGYGNRREGNEVMKLLREM 351

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +  G      T SS +S+C      TE +Q H   +   F   L + + L+  Y + G  
Sbjct: 352 LREGFSPDELTISSTISLCGYVSAITETMQAHAFAVKSSFQEFLSVANSLISAYSKCGSI 411

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   F    E +L +W  ++ A+       E   ++ KM + G+ P+ +SF  ++  C
Sbjct: 412 TSACKCFRLTREPDLVSWTSLINAYAFHGLAKEATEVFEKMLSCGIIPDQISFLGVLSAC 471

Query: 222 SIGMLLDEG 230
           S   L+ +G
Sbjct: 472 SHCGLVTKG 480


>gi|347954544|gb|AEP33772.1| organelle transcript processing 82, partial [Draba nemorosa]
          Length = 526

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 155/523 (29%), Positives = 279/523 (53%), Gaps = 42/523 (8%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR----ALDLFDELPERNLATWNLMLRAFC 187
           IH +++  G     Y  S L++ +  + P       A+ +F+ + E NL  WN M R   
Sbjct: 6   IHAQMIKTGLHNTNYALSKLIE-FCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHA 64

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             S P   L +Y  M + G+ PN  +F ++++ C+      EG+Q+H HV+KLG+ D+++
Sbjct: 65  LSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGY-DLDL 123

Query: 248 FVANALVDFYSACGSLIEAKKSFDF-------------------------------IPVD 276
           +V  +L+  Y   G L +A+K FD                                IPV 
Sbjct: 124 YVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVK 183

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWN+++S YA+     +ALELF  M     RP   + V  ++  +++G++  G+Q+H
Sbjct: 184 DVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVH 243

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            ++   GF   ++ + +AL D+Y KC  +E++  +FE    + +   N+L+    H    
Sbjct: 244 LWIDDHGFG-SNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLY 302

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNIAV 454
           K+A+ +F  M+  G   ++VT+ + L A +   + ++G  R +H    K   G  +  ++
Sbjct: 303 KEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIG--RWIHVYINKRLKGVTNASSL 360

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++CG IE + QVF+ + + ++  + +++ G++ +G    A D+   M + G+
Sbjct: 361 LTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGI 420

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD +TF+ +L+ C+HSGM+  G+ +F SM   Y I    +HY CMID+LG  G+  +A+
Sbjct: 421 DPDDITFVGLLSACSHSGMLDLGRHIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAK 480

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617
           E+++  P   D ++W SLL++C++H N  +G   A  L+++EP
Sbjct: 481 EMIRTMPMEPDGVIWCSLLKACKMHNNVELGESYAQNLIKIEP 523



 Score =  179 bits (453), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 131/490 (26%), Positives = 225/490 (45%), Gaps = 50/490 (10%)

Query: 45  YSSNRTIDDFVKSGHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y+ ++ I+  V S H +    A  +F+ +   +++ +N +  G      P  ALYLY  M
Sbjct: 20  YALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRGHALSSDPVSALYLYVCM 79

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP- 160
           +S G+  +  TF  +L  C+ +  + EG QIH  VL LG+ L+LY+ + L+ +Y++ G  
Sbjct: 80  ISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLDLYVHTSLISMYVQNGRL 139

Query: 161 ----------------SVRAL--------------DLFDELPERNLATWNLMLRAFCELS 190
                           S  AL               LFDE+P +++ +WN M+  + E  
Sbjct: 140 EDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETG 199

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-----V 245
              E L ++  M    V P+  +   +V  C+    ++ G+Q+H       W+D      
Sbjct: 200 NYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELGRQVHL------WIDDHGFGS 253

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           N+ + NAL+D YS CG +  A   F+ +   DVISWN+++  Y   +L  +AL LF  M 
Sbjct: 254 NLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEML 313

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL--GFDHGSVHVQSALTDMYGKCN 363
              + P+  + +  L   +  G +  G+ IH Y+ K   G  + S  + ++L DMY KC 
Sbjct: 314 RSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNAS-SLLTSLIDMYAKCG 372

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            IE++  VF+S   RSL   N+++      G    A ++F  M   GI  D++T    L 
Sbjct: 373 DIEAAKQVFDSMLTRSLSSWNAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLS 432

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
           A S S   +LG   +    +        +     ++D    CG  + + ++   +P  P+
Sbjct: 433 ACSHSGMLDLGR-HIFRSMSQDYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMPMEPD 491

Query: 483 VVCFTSIMNG 492
            V + S++  
Sbjct: 492 GVIWCSLLKA 501



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/361 (26%), Positives = 186/361 (51%), Gaps = 4/361 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    I  +   G++ +A+KLFDE+P +D+V++N +ISG  +  + K+AL L+ +M+
Sbjct: 153 DVVSYTALIKGYASRGYIENAQKLFDEIPVKDVVSWNAMISGYAETGNYKEALELFKDMM 212

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++   ST  +V+S C+ +G    G Q+H  +   GFG NL I + L+DLY + G   
Sbjct: 213 KTNVRPDESTMVTVVSACAQSGSIELGRQVHLWIDDHGFGSNLKIVNALIDLYSKCGEVE 272

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ L  +++ +WN ++  +  ++   E L ++ +M   G  PN ++   ++  C+
Sbjct: 273 TACGLFEGLSYKDVISWNTLIGGYTHMNLYKEALLLFQEMLRSGESPNDVTMLSILPACA 332

Query: 223 IGMLLDEGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +D G+ +H ++ K L  V     +  +L+D Y+ CG +  AK+ FD +    + SW
Sbjct: 333 HLGAIDIGRWIHVYINKRLKGVTNASSLLTSLIDMYAKCGDIEAAKQVFDSMLTRSLSSW 392

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  +A +     A +LF +M+     P   +FV  L+  S +G +  G+ I   +++
Sbjct: 393 NAMIFGFAMHGKANAAFDLFSKMRKNGIDPDDITFVGLLSACSHSGMLDLGRHIFRSMSQ 452

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                  +     + D+ G C + + +  +  + P   +E    +  SLL +  + + VE
Sbjct: 453 DYKITPKLEHYGCMIDLLGHCGLFKEAKEMIRTMP---MEPDGVIWCSLLKACKMHNNVE 509

Query: 402 M 402
           +
Sbjct: 510 L 510



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 101/411 (24%), Positives = 191/411 (46%), Gaps = 50/411 (12%)

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDF---YSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           + +H+ +IK G  + N +  + L++F         L  A   F+ I   +++ WN++   
Sbjct: 4   RMIHAQMIKTGLHNTN-YALSKLIEFCVLSPHFDGLPYAISVFETIQEPNLLIWNTMFRG 62

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD-- 345
           +A       AL L+  M      P+  +F   L   +++     G+QIHG+V KLG+D  
Sbjct: 63  HALSSDPVSALYLYVCMISLGLLPNCYTFPFLLKSCAKSKAFREGQQIHGHVLKLGYDLD 122

Query: 346 ----------------------------HGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
                                       H  V   +AL   Y     IE++  +F+  P 
Sbjct: 123 LYVHTSLISMYVQNGRLEDARKVFDQSSHRDVVSYTALIKGYASRGYIENAQKLFDEIPV 182

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           + +   N++++    +GN K+A+E+F  M+   +  DE T+ T + A + S S  LG  R
Sbjct: 183 KDVVSWNAMISGYAETGNYKEALELFKDMMKTNVRPDESTMVTVVSACAQSGSIELG--R 240

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H      GF SN+ +  +L+D YS+CG +E +  +FE +   +V+ + +++ GY+   
Sbjct: 241 QVHLWIDDHGFGSNLKIVNALIDLYSKCGEVETACGLFEGLSYKDVISWNTLIGGYTHMN 300

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQH 556
           + +EAL + + M++ G  P+ VT L +L  C H G +  G+ +   + K + G+      
Sbjct: 301 LYKEALLLFQEMLRSGESPNDVTMLSILPACAHLGAIDIGRWIHVYINKRLKGVTNASSL 360

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMM------WSSLLRSCRVHGN 601
            + +IDM  + G ++ A+++        D M+      W++++    +HG 
Sbjct: 361 LTSLIDMYAKCGDIEAAKQVF-------DSMLTRSLSSWNAMIFGFAMHGK 404


>gi|357465899|ref|XP_003603234.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492282|gb|AES73485.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 973

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 178/613 (29%), Positives = 320/613 (52%), Gaps = 20/613 (3%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A KLF      D+  +N  +S   +     +A+  + +M+   +   + T+  +LSV ++
Sbjct: 250 ATKLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVAS 309

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G QIH  V+  G+   + + +  +++Y++ G    A  +F ++ E +L +WN +
Sbjct: 310 LNHLELGKQIHGAVVRFGWDQFVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTV 369

Query: 183 LRAFCELSRPDEV-LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE----GKQLHSHV 237
           +   C  S  +E  LR++  +   G+ P+  +   ++R CS    L+E    G+Q+H+  
Sbjct: 370 ISG-CARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSS---LEESYCVGRQVHTCA 425

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K G V ++ FV+ AL+D YS  G + EA+  F      D+ SWN+++  +   D   +A
Sbjct: 426 LKAGIV-LDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREA 484

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTG---NVYFGKQIHGYVTKLGFDHGSVHVQSA 354
           L LF    L  +R      + F N A   G    +  GKQIH  V K+ F H  + V S 
Sbjct: 485 LRLF---SLMHERGEKADQITFANAAKAAGCLVRLQQGKQIHAVVIKMRF-HYDLFVISG 540

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           + DMY KC  ++S+  VF   P        ++++  + +G  + A+  +  M   G+  D
Sbjct: 541 ILDMYLKCGEMKSARKVFNQIPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPD 600

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           E T +T +KA S+  +   G  + +H   +K     +  V  SL+D Y++CG+IE ++ +
Sbjct: 601 EYTFATLVKACSLLTALEQG--KQIHANIMKLNCAFDPFVMTSLVDMYAKCGNIEDAYGL 658

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F ++ + +V  + +++ G +++G   EAL+    M  RG+ PD+VTF+ VL+ C+HSG+ 
Sbjct: 659 FRRMNTRSVALWNAMIVGLAQHGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLT 718

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            +    F+SM+  YG++ + +HYSC++D L RAG + +AE+++   P      M+ +LL 
Sbjct: 719 SDAYKNFDSMQKTYGVEPEIEHYSCLVDALSRAGHIQEAEKVVSSMPFEASATMYRTLLN 778

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +CRV G++  G RVA  L  ++P D A Y  +SN Y+   ++E ++  R       + ++
Sbjct: 779 ACRVQGDKETGERVAEKLFTMDPSDSAAYVLLSNIYAAANQWENAVSARNMMKRVNVKKE 838

Query: 655 IGHSLIEV-NSCH 666
            G S I++ N  H
Sbjct: 839 PGFSWIDMKNKVH 851



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 140/581 (24%), Positives = 269/581 (46%), Gaps = 60/581 (10%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISGCG------KFRH 90
           NP  + Y +N  I  + K G L SA+KLFD  P   RD+VTYN +++             
Sbjct: 45  NP--DRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAAYAHTGELHDVEK 102

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
             +A +++  +    +  +  T S +  +C   G  +    +    + +G   ++++   
Sbjct: 103 THEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVKIGLQWDVFVAGA 162

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV++Y +      A  LFD +P R++  WN+M++A+ E+   DEVL +++     G+ P+
Sbjct: 163 LVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLGLFSAFHRSGLRPD 222

Query: 211 GLSFCYMVRGCSIGMLLD-EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
            +S   ++ G     + + E +Q+ ++  KL   D +                       
Sbjct: 223 CVSVRTILMGVGKKTVFERELEQVRAYATKLFVCDDD----------------------- 259

Query: 270 FDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
                  DV  WN  +S Y      ++A++ F  M   R      +++  L+  +   ++
Sbjct: 260 ------SDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTYIVILSVVASLNHL 313

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
             GKQIHG V + G+D   V V ++  +MY K   +  +  +F       L   N++++ 
Sbjct: 314 ELGKQIHGAVVRFGWDQ-FVSVANSAINMYVKAGSVNYARRMFGQMKEVDLISWNTVISG 372

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
              SG  + ++ +F  ++  G+  D+ T+++ L+A S S   +    R +H CA+K+G  
Sbjct: 373 CARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACS-SLEESYCVGRQVHTCALKAGIV 431

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            +  VS +L+D YS+ G +E +  +F      ++  + ++M+G++ +   REAL +  +M
Sbjct: 432 LDSFVSTALIDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLM 491

Query: 510 IQRGLIPDKVTF--LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHY-----SCMI 561
            +RG   D++TF      AGC    +V+  Q      K ++ +    R HY     S ++
Sbjct: 492 HERGEKADQITFANAAKAAGC----LVRLQQ-----GKQIHAVVIKMRFHYDLFVISGIL 542

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNE 602
           DM  + G +  A ++  Q P   D + W++++  C  +G E
Sbjct: 543 DMYLKCGEMKSARKVFNQIPSPDD-VAWTTVISGCVENGEE 582



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 108/447 (24%), Positives = 206/447 (46%), Gaps = 32/447 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC----------QPNPQLNIYSSNRT 50
           +L + LLP   TIT++   C+S        L +SYC          +    L+ + S   
Sbjct: 389 LLRSGLLPDQFTITSVLRACSS--------LEESYCVGRQVHTCALKAGIVLDSFVSTAL 440

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID + K G +  A+ LF      D+ ++N ++ G     + ++AL L+  M   G K   
Sbjct: 441 IDVYSKGGKMEEAELLFHNQDGFDLASWNAMMHGFTVSDNYREALRLFSLMHERGEKADQ 500

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF++            +G QIH  V+ + F  +L++ S ++D+Y++ G    A  +F++
Sbjct: 501 ITFANAAKAAGCLVRLQQGKQIHAVVIKMRFHYDLFVISGILDMYLKCGEMKSARKVFNQ 560

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P  +   W  ++    E    ++ L  Y++M+  GV+P+  +F  +V+ CS+   L++G
Sbjct: 561 IPSPDDVAWTTVISGCVENGEEEQALFTYHQMRLAGVQPDEYTFATLVKACSLLTALEQG 620

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+H++++KL     + FV  +LVD Y+ CG++ +A   F  +    V  WN+++   A 
Sbjct: 621 KQIHANIMKLN-CAFDPFVMTSLVDMYAKCGNIEDAYGLFRRMNTRSVALWNAMIVGLAQ 679

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG---NVY--FGKQIHGYVTKLGFD 345
           +    +AL  F  M+     P   +F+  L+  S +G   + Y  F      Y  +   +
Sbjct: 680 HGNAEEALNFFNEMKSRGVTPDRVTFIGVLSACSHSGLTSDAYKNFDSMQKTYGVEPEIE 739

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           H      S L D   +   I+ +  V  S P    E   ++  +LL++  ++   E    
Sbjct: 740 H-----YSCLVDALSRAGHIQEAEKVVSSMP---FEASATMYRTLLNACRVQGDKETGER 791

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASAN 432
           + ++   +D    +  +   ++ A+AN
Sbjct: 792 VAEKLFTMDPSDSAAYVLLSNIYAAAN 818



 Score = 84.0 bits (206), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 103/452 (22%), Positives = 190/452 (42%), Gaps = 55/452 (12%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSIVSI 287
           GK+ H+ ++  G ++ + +V N L+  Y+ CGSL  A+K FD  P    D++++N+I++ 
Sbjct: 32  GKRTHAVIVTSG-LNPDRYVTNNLITMYAKCGSLFSARKLFDITPQSDRDLVTYNAILAA 90

Query: 288 YA------DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           YA      D +   +A  +F  ++      +  +           G+    + + GY  K
Sbjct: 91  YAHTGELHDVEKTHEAFHIFRLLRQSVMLTTRHTLSPLFKLCLLYGSPSASEALQGYAVK 150

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           +G     V V  AL ++Y K   I  +  +F+  P R +   N +M + +  G   + + 
Sbjct: 151 IGL-QWDVFVAGALVNIYAKFQRIREARVLFDRMPVRDVVLWNVMMKAYVEMGAGDEVLG 209

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F      G+  D V++ T L  +                   K+ FE  +      + A
Sbjct: 210 LFSAFHRSGLRPDCVSVRTILMGV-----------------GKKTVFEREL----EQVRA 248

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y+         ++F      +V  +   ++ Y + G G EA+D    MI+  +  D +T+
Sbjct: 249 YAT--------KLFVCDDDSDVTVWNKTLSSYLQAGEGWEAVDCFRDMIKSRVPCDSLTY 300

Query: 522 ---LCVLAGCNHSGMVKE--GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
              L V+A  NH  + K+  G +V       +G D      +  I+M  +AG ++ A  +
Sbjct: 301 IVILSVVASLNHLELGKQIHGAVV------RFGWDQFVSVANSAINMYVKAGSVNYARRM 354

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME--LEPVDFAVYSQVSNFYSEIG 634
             Q     D + W++++  C   G E    R+   L+   L P  F + S +    S   
Sbjct: 355 FGQMK-EVDLISWNTVISGCARSGLEECSLRLFIDLLRSGLLPDQFTITSVLRACSSLEE 413

Query: 635 EFEVSMQIRETALARKLTRD--IGHSLIEVNS 664
            + V  Q+   AL   +  D  +  +LI+V S
Sbjct: 414 SYCVGRQVHTCALKAGIVLDSFVSTALIDVYS 445


>gi|224140549|ref|XP_002323645.1| predicted protein [Populus trichocarpa]
 gi|222868275|gb|EEF05406.1| predicted protein [Populus trichocarpa]
          Length = 682

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/535 (29%), Positives = 293/535 (54%), Gaps = 8/535 (1%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            IH  +L LG   + Y+ + ++      G +  +  + D+  E N+  +N M+R      
Sbjct: 28  HIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLND 87

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E + +Y+ M+ EG+ P+  +F ++++ C+  +  + G ++HS V+K G  + + FV 
Sbjct: 88  CFQESIEIYHSMRKEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAG-CEADAFVK 146

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +L++ Y+ CG +  A K FD IP  +  SW + +S Y       +A+++F R+     R
Sbjct: 147 ISLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLR 206

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   S VE L+   RTG++  G+ I  Y+T+ G    +V V +AL D YGKC  +E + +
Sbjct: 207 PDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVR-NVFVATALVDFYGKCGNMERARS 265

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF+    +++   +S++     +G  K+A+++F  M++EG+  D   +   L + +   +
Sbjct: 266 VFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGA 325

Query: 431 ANLG--SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
             LG  +  L++     + F  N  +  +L+D Y++CG ++ + +VF  +   + V + +
Sbjct: 326 LELGDWASNLIN----GNEFLDNSVLGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNA 381

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
            ++G + +G  ++AL +   M + G+ PD+ TF+ +L  C H+G+V+EG+  FNSM+ V+
Sbjct: 382 AISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGRRYFNSMECVF 441

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            +  + +HY CM+D+LGRAG LD+A +L++  P   + ++W +LL  CR+H +  +   V
Sbjct: 442 TLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMPMEANAIVWGALLGGCRLHRDTQLVEVV 501

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
              L+ LEP     Y  +SN Y+   ++E + +IR     R + +  G+S IEV+
Sbjct: 502 LKKLIALEPWHSGNYVLLSNIYAASHKWEEAAKIRSIMSERGVKKIPGYSWIEVD 556



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 113/451 (25%), Positives = 214/451 (47%), Gaps = 4/451 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N+ +      G+ N + ++ D+    ++  +N +I G       ++++ +Y  M 
Sbjct: 41  DTYLLNKVLRFSFNFGNTNYSFRILDQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMR 100

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+   + TF  VL  C+       G+++H  V+  G   + ++   L++LY + G   
Sbjct: 101 KEGLSPDSFTFPFVLKACARVLDSELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFID 160

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD++P++N A+W   +  +  + +  E + M+ ++   G+ P+  S   ++  C 
Sbjct: 161 NAFKVFDDIPDKNFASWTATISGYVGVGKCREAIDMFRRLLEMGLRPDSFSLVEVLSACK 220

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G+ +  ++ + G V  N+FVA ALVDFY  CG++  A+  FD +   +++SW+
Sbjct: 221 RTGDLRSGEWIDEYITENGMVR-NVFVATALVDFYGKCGNMERARSVFDGMLEKNIVSWS 279

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S++  YA   L  +AL+LFF+M     +P   + V  L   +R G +  G      +   
Sbjct: 280 SMIQGYASNGLPKEALDLFFKMLNEGLKPDCYAMVGVLCSCARLGALELGDWASNLINGN 339

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            F   SV + +AL DMY KC  ++ +  VF     +     N+ ++ L  SG++KDA+ +
Sbjct: 340 EFLDNSV-LGTALIDMYAKCGRMDRAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGL 398

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           FG M   GI  D  T    L A + +     G  R  +           I     ++D  
Sbjct: 399 FGQMEKSGIKPDRNTFVGLLCACTHAGLVEEGR-RYFNSMECVFTLTPEIEHYGCMVDLL 457

Query: 463 SRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
            R G ++ +HQ+ + +P   N + + +++ G
Sbjct: 458 GRAGCLDEAHQLIKSMPMEANAIVWGALLGG 488



 Score =  123 bits (308), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 87/352 (24%), Positives = 170/352 (48%), Gaps = 13/352 (3%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           SL++ + C+ +  + I      I+ + K G +++A K+FD++P ++  ++   ISG    
Sbjct: 132 SLVVKAGCEADAFVKI----SLINLYTKCGFIDNAFKVFDDIPDKNFASWTATISGYVGV 187

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
              ++A+ ++  ++  G++  + +   VLS C   G    G  I   +   G   N+++ 
Sbjct: 188 GKCREAIDMFRRLLEMGLRPDSFSLVEVLSACKRTGDLRSGEWIDEYITENGMVRNVFVA 247

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + LVD Y + G   RA  +FD + E+N+ +W+ M++ +     P E L ++ KM  EG++
Sbjct: 248 TALVDFYGKCGNMERARSVFDGMLEKNIVSWSSMIQGYASNGLPKEALDLFFKMLNEGLK 307

Query: 209 PNGLSFCYMVRG--CSIGML--LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
           P+    CY + G  CS   L  L+ G    + +    ++D N  +  AL+D Y+ CG + 
Sbjct: 308 PD----CYAMVGVLCSCARLGALELGDWASNLINGNEFLD-NSVLGTALIDMYAKCGRMD 362

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
            A + F  +   D + WN+ +S  A    + DAL LF +M+    +P   +FV  L   +
Sbjct: 363 RAWEVFRGMRKKDRVVWNAAISGLAMSGHVKDALGLFGQMEKSGIKPDRNTFVGLLCACT 422

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
             G V  G++    +  +      +     + D+ G+   ++ +  + +S P
Sbjct: 423 HAGLVEEGRRYFNSMECVFTLTPEIEHYGCMVDLLGRAGCLDEAHQLIKSMP 474



 Score = 49.7 bits (117), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 35/166 (21%), Positives = 74/166 (44%), Gaps = 1/166 (0%)

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VT S  +K   +   + L   + +H   ++ G + +  +   ++      G+   S ++ 
Sbjct: 6   VTKSAGIKNRLIQGFSCLKHLKHIHAALLRLGLDEDTYLLNKVLRFSFNFGNTNYSFRIL 65

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           ++   PN+  F +++ G   N   +E++++   M + GL PD  TF  VL  C    +  
Sbjct: 66  DQTKEPNIFLFNTMIRGLVLNDCFQESIEIYHSMRKEGLSPDSFTFPFVLKACARV-LDS 124

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           E  +  +S+    G +AD      +I++  + G +D A ++    P
Sbjct: 125 ELGVKMHSLVVKAGCEADAFVKISLINLYTKCGFIDNAFKVFDDIP 170


>gi|297743099|emb|CBI35966.3| unnamed protein product [Vitis vinifera]
          Length = 624

 Score =  267 bits (682), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 161/586 (27%), Positives = 303/586 (51%), Gaps = 50/586 (8%)

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL----YMRMGPSVRALDLFDEL 171
           +LS+   A   T+  QIH + L  G  L  ++   L+DL    Y R         + D+ 
Sbjct: 2   LLSLLRTATSLTQIHQIHAQTLIHGLPLQTHLIPKLIDLHSIDYARF--------VLDQT 53

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
           P     +WN ++RA+     P   L +Y KM     +P+  +F ++++ CS    + EG+
Sbjct: 54  PSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKACSTLGSVLEGE 113

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           Q+H+HV++LG+   ++FV N+L+D Y  C  L  A+  +D +   D +SWNSI+S Y  +
Sbjct: 114 QIHTHVLRLGF-GSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSWNSIISGYVQW 172

Query: 292 DLIFDALELFFRMQLCRK----------------------------------RPSIRSFV 317
             +  A +LF  M + R                                   +P+  + V
Sbjct: 173 GQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSADEVQPNAATMV 232

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             L+  S   N   G+ +  ++        ++ V +AL DMY KC  +E +  +F+    
Sbjct: 233 CLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILV-TALIDMYSKCGDVEKAWRIFDGVSC 291

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           ++L   N+++T  +  G +++A++++  M  + +  +E+TL   L A +   +  LG  R
Sbjct: 292 KNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGALELG--R 349

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNG 497
            +H    ++G + N+ ++ +L+D Y++CG I+ +  +F K    +V  + +++ G + +G
Sbjct: 350 EVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGLAYHG 409

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557
            GR++L +   M++ G+ P+ VTF+ VL+ CNHSG+V+EG++ F+SM   +G+    +HY
Sbjct: 410 DGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHGLSPKLEHY 469

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617
           +CM+D+LGRAG L +A EL+Q      D ++W +LL +CR+H N  +  +++  +M  + 
Sbjct: 470 ACMVDLLGRAGHLKEAYELVQNMLIPPDSIIWGALLSACRIHRNLELADKISETIMASQD 529

Query: 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            +      +SN Y+  G ++   ++R     +++ +  G S +EV+
Sbjct: 530 PNIGFCILLSNIYASSGRWKDVARVRRQVKEKRIKKPSGCSWVEVD 575



 Score =  176 bits (447), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 119/456 (26%), Positives = 222/456 (48%), Gaps = 37/456 (8%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A+ + D+ P+    ++N LI        P+ +L+LY +M+    K S  TF  VL  
Sbjct: 43  IDYARFVLDQTPSPTDFSWNSLIRAYTVHGSPQNSLFLYLKMLRSSTKPSNFTFPFVLKA 102

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY------------------------ 155
           CS  G   EG QIH  VL LGFG +L++ + L+D+Y                        
Sbjct: 103 CSTLGSVLEGEQIHTHVLRLGFGSDLFVCNSLIDMYCKCFRLDSARNFWDDMGFRDEVSW 162

Query: 156 -------MRMGPSVRALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKM--KAE 205
                  ++ G   +A DLF+E+P  RN+  W  M+  + +     E+L ++ +M   A+
Sbjct: 163 NSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVSAD 222

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            V+PN  +   ++  CS     + G+ L S  I +  + +N  +  AL+D YS CG + +
Sbjct: 223 EVQPNAATMVCLLSACSTLCNYEVGRFL-SVFIDVNKIPLNTILVTALIDMYSKCGDVEK 281

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A + FD +   ++ SWN+I++      L+ +A++L+  M+    +P+  + V  L+  + 
Sbjct: 282 AWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAG 341

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G +  G+++H Y+ + G D  +V + +AL DMY KC  I+ +  +F     + +   N+
Sbjct: 342 LGALELGREVHLYLGRNGLDL-NVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNA 400

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++  L + G+ +D++ +F  MV  G+  ++VT    L A + S     G  +     A K
Sbjct: 401 MILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQ-FSSMADK 459

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
            G    +     ++D   R GH++ ++++ + +  P
Sbjct: 460 HGLSPKLEHYACMVDLLGRAGHLKEAYELVQNMLIP 495



 Score =  122 bits (305), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 87/333 (26%), Positives = 171/333 (51%), Gaps = 6/333 (1%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEMV-- 102
           S N  I  +V+ G +  A+ LF+EMP  R++V +  +I+G GK     + L L+ +M+  
Sbjct: 161 SWNSIISGYVQWGQVEKARDLFEEMPMRRNVVCWTAMINGYGKEGDFVEMLSLFRQMLVS 220

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  ++ +A+T   +LS CS    Y  G  +   +      LN  + + L+D+Y + G   
Sbjct: 221 ADEVQPNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVE 280

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
           +A  +FD +  +NL +WN ++    +    +E + +Y  MKA+ V+PN ++   ++  C+
Sbjct: 281 KAWRIFDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACA 340

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ G+++H ++ + G +D+N+ +A ALVD Y+ CG + +A   F      DV  WN
Sbjct: 341 GLGALELGREVHLYLGRNG-LDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWN 399

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK-QIHGYVTK 341
           +++   A +    D+L +F +M     +P+  +F+  L+  + +G V  G+ Q      K
Sbjct: 400 AMILGLAYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADK 459

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
            G      H  + + D+ G+   ++ +  + ++
Sbjct: 460 HGLSPKLEHY-ACMVDLLGRAGHLKEAYELVQN 491



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 74/283 (26%), Positives = 136/283 (48%), Gaps = 6/283 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  L   C+++        L  +   N   LN       ID + K G +  A ++
Sbjct: 226 PNAATMVCLLSACSTLCNYEVGRFLSVFIDVNKIPLNTILVTALIDMYSKCGDVEKAWRI 285

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD +  +++ ++N +I+GC +    ++A+ LY  M +  +K +  T  +VLS C+  G  
Sbjct: 286 FDGVSCKNLPSWNAIITGCVQGGLLEEAIDLYRHMKAQSVKPNEITLVNVLSACAGLGAL 345

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G ++H  +   G  LN+ + + LVD+Y + G    A  +F +  E+++A WN M+   
Sbjct: 346 ELGREVHLYLGRNGLDLNVILATALVDMYAKCGKIDDACLIFVKTSEKDVALWNAMILGL 405

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK-QLHSHVIKLGWVDV 245
                  + L ++++M   GV+PN ++F  ++  C+   L++EG+ Q  S   K G +  
Sbjct: 406 AYHGDGRDSLAVFSQMVRAGVQPNDVTFIGVLSACNHSGLVEEGRVQFSSMADKHG-LSP 464

Query: 246 NIFVANALVDFYSACGSLIEAKKSFD--FIPVDDVISWNSIVS 286
            +     +VD     G L EA +      IP D +I W +++S
Sbjct: 465 KLEHYACMVDLLGRAGHLKEAYELVQNMLIPPDSII-WGALLS 506


>gi|449477503|ref|XP_004155042.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g18485-like [Cucumis sativus]
          Length = 990

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 176/625 (28%), Positives = 321/625 (51%), Gaps = 8/625 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++++  N  I  + K G L+ A +LFD+MP ++++++N LI G  +     +A   +  +
Sbjct: 243 MDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSL 302

Query: 102 VS--HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +    G+    +T  ++L VCS  G    G+ IH   + LG    L + + L+D+Y + G
Sbjct: 303 LESGDGLIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCG 362

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM--KAEGVEPNGLSFCYM 217
               A  LF ++  +++ +WN M+ A+       E   +  KM  + E +E N ++   +
Sbjct: 363 CLSEAAILFRKIENKSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNL 422

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  C     L   + LH + ++  +      + NA +  Y+ CGSL+ A+  F  +    
Sbjct: 423 LPACLEESELLSLRALHGYSLRHSF-QYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKS 481

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V SWN+++  +A       AL+ +F M      P   S V  L    R G + +GK+IHG
Sbjct: 482 VSSWNAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHG 541

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           +V + G +  S  V  +L  +Y  C+        FE    ++  C N++++    +    
Sbjct: 542 FVLRNGLEMNSF-VAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPN 600

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+ +F  M+ +G+  DE+ +++ L A S  ++  LG  + +HC A+K+    +  V+CS
Sbjct: 601 EALSLFRQMLSDGLEPDEIAIASILGACSQLSALGLG--KEVHCFALKNSLMEDNFVACS 658

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           LMD Y++ G +  S ++F ++    V  +  ++ G+  +G G +A+++ E M +    PD
Sbjct: 659 LMDMYAKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPD 718

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           + TFL VL  C H+G+V EG      M+++Y ++ + +HY+C+IDMLGRAG L++A   +
Sbjct: 719 RFTFLGVLQACCHAGLVSEGLNYLAQMQTLYKLEPELEHYACVIDMLGRAGRLNEALNFI 778

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
            + P   D  +WSSLL S   + +  +G + A  L+ LE      Y  +SN Y+  G+++
Sbjct: 779 NEMPEEPDAKIWSSLLSSSITYVDLEMGEKFAEKLLALEANKADSYILLSNLYATAGKWD 838

Query: 638 VSMQIRETALARKLTRDIGHSLIEV 662
           V   +R+      L +D+G S IE+
Sbjct: 839 VVRMVRQKMKDLSLQKDVGCSWIEL 863



 Score =  189 bits (481), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 138/581 (23%), Positives = 274/581 (47%), Gaps = 20/581 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HG 105
           + R I  +   G+   ++ +FD +  +++  +N L+SG  +     +A++ + E++S   
Sbjct: 146 NTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFLELISVTE 205

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
            +    TF  ++  C+       G  +H   + +G  ++L++G+ ++ LY + G    A+
Sbjct: 206 FQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLIMDLFVGNAMIALYGKCGFLDEAV 265

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM--KAEGVEPNGLSFCYMVRGCSI 223
           +LFD++PE+NL +WN ++R F E     E  R +  +    +G+ P+  +   ++  CS 
Sbjct: 266 ELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMVTLLPVCSG 325

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +D G  +H   +KLG V   + V NAL+D YS CG L EA   F  I    V+SWNS
Sbjct: 326 EGNVDVGMVIHGMAVKLGLVH-ELMVCNALIDMYSKCGCLSEAAILFRKIENKSVVSWNS 384

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++  Y+    +F+  +L  +M +  +   +   + +  L        +   + +HGY  +
Sbjct: 385 MIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPACLEESELLSLRALHGYSLR 444

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             F +  + + +A    Y KC  +  +  VF     +S+   N+++     +G+   A++
Sbjct: 445 HSFQYKEL-INNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQNGDPIKALD 503

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            +  M   GI  D+ ++ + L A         G  + +H   +++G E N  V+ SL+  
Sbjct: 504 FYFEMTRLGILPDDFSIVSLLLACGRLGLLQYG--KEIHGFVLRNGLEMNSFVAVSLLSL 561

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y  C         FE++   N VC+ ++++GYS+N +  EAL +   M+  GL PD++  
Sbjct: 562 YFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALSLFRQMLSDGLEPDEIAI 621

Query: 522 LCVLAGCNHSGMVKEGQLV--FNSMKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQ 578
             +L  C+    +  G+ V  F    S+     +    +C ++DM  ++G L  ++ +  
Sbjct: 622 ASILGACSQLSALGLGKEVHCFALKNSL----MEDNFVACSLMDMYAKSGFLGHSQRIFN 677

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           +   G +   W+ ++    VHG    G +   +  +++  D
Sbjct: 678 RL-NGKEVASWNVMITGFGVHGQ---GNKAVELFEDMKRSD 714



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 203/403 (50%), Gaps = 9/403 (2%)

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
           F  +  + + L+ +Y   G  + +  +FD L  +NL  WN ++  +      DE +  + 
Sbjct: 139 FSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAIHTFL 198

Query: 201 KM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA 259
           ++      +P+  +F  +++ C+    +  GK +H   +K+G + +++FV NA++  Y  
Sbjct: 199 ELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSVHGMAVKMGLI-MDLFVGNAMIALYGK 257

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR--PSIRSFV 317
           CG L EA + FD +P  ++ISWNS++  +++     +A   F  +        P + + V
Sbjct: 258 CGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAFRSLLESGDGLIPDVATMV 317

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             L   S  GNV  G  IHG   KLG  H  + V +AL DMY KC  +  +  +F     
Sbjct: 318 TLLPVCSGEGNVDVGMVIHGMAVKLGLVH-ELMVCNALIDMYSKCGCLSEAAILFRKIEN 376

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFG--FMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           +S+   NS++ +    G + +  ++    +M +E + ++EVT+   L A      + L S
Sbjct: 377 KSVVSWNSMIGAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPA--CLEESELLS 434

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            R LH  +++  F+    ++ + + AY++CG +  +  VF  + + +V  + +++ G+++
Sbjct: 435 LRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSWNAVIGGHAQ 494

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           NG   +ALD    M + G++PD  + + +L  C   G+++ G+
Sbjct: 495 NGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGK 537



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 98/425 (23%), Positives = 182/425 (42%), Gaps = 11/425 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLNSAK 64
           L+P V T+ TL P C+    +   +++         ++ +   N  ID + K G L+ A 
Sbjct: 309 LIPDVATMVTLLPVCSGEGNVDVGMVIHGMAVKLGLVHELMVCNALIDMYSKCGCLSEAA 368

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE-----SASTFSSVLSV 119
            LF ++  + +V++N +I   G +         +D +    ++E     +  T  ++L  
Sbjct: 369 ILFRKIENKSVVSWNSMI---GAYSREGFVFETFDLLRKMWMEEELMEVNEVTILNLLPA 425

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C           +H   L   F     I +  +  Y + G  V A  +F  +  +++++W
Sbjct: 426 CLEESELLSLRALHGYSLRHSFQYKELINNAFIAAYAKCGSLVFAEHVFFGMNTKSVSSW 485

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++    +   P + L  Y +M   G+ P+  S   ++  C    LL  GK++H  V++
Sbjct: 486 NAVIGGHAQNGDPIKALDFYFEMTRLGILPDDFSIVSLLLACGRLGLLQYGKEIHGFVLR 545

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +++N FVA +L+  Y  C      +  F+ +   + + WN+++S Y+  +L  +AL 
Sbjct: 546 NG-LEMNSFVAVSLLSLYFHCSKPFYGRTYFERMGDKNSVCWNAMLSGYSQNELPNEALS 604

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF +M      P   +    L   S+   +  GK++H +  K      +  V  +L DMY
Sbjct: 605 LFRQMLSDGLEPDEIAIASILGACSQLSALGLGKEVHCFALKNSLMEDNF-VACSLMDMY 663

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K   +  S  +F    G+ +   N ++T     G    AVE+F  M       D  T  
Sbjct: 664 AKSGFLGHSQRIFNRLNGKEVASWNVMITGFGVHGQGNKAVELFEDMKRSDKQPDRFTFL 723

Query: 420 TTLKA 424
             L+A
Sbjct: 724 GVLQA 728



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 64/269 (23%), Positives = 127/269 (47%), Gaps = 7/269 (2%)

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           NV  G+++   +       G   + + L  MY  C     S  VF+    ++L   N+L+
Sbjct: 122 NVEIGRKLDEMLCVSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALV 181

Query: 388 TSLLHSGNIKDAVEMFGFMVD-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +  + +    +A+  F  ++       D  T    +KA +     +LG  + +H  A+K 
Sbjct: 182 SGYVRNELYDEAIHTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLG--KSVHGMAVKM 239

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G   ++ V  +++  Y +CG ++ + ++F+K+P  N++ + S++ G+S NG   EA    
Sbjct: 240 GLIMDLFVGNAMIALYGKCGFLDEAVELFDKMPEQNLISWNSLIRGFSENGFWLEAYRAF 299

Query: 507 EVMIQR--GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
             +++   GLIPD  T + +L  C+  G V  G +V + M    G+  +    + +IDM 
Sbjct: 300 RSLLESGDGLIPDVATMVTLLPVCSGEGNVDVG-MVIHGMAVKLGLVHELMVCNALIDMY 358

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            + G L +A  L ++       + W+S++
Sbjct: 359 SKCGCLSEAAILFRKIE-NKSVVSWNSMI 386



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 86/172 (50%), Gaps = 3/172 (1%)

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           + S F  +  ++  L+  YS CG+   S  VF+++ + N+  + ++++GY RN +  EA+
Sbjct: 135 VSSQFSGDFVLNTRLITMYSICGYPLESRLVFDRLLNKNLFQWNALVSGYVRNELYDEAI 194

Query: 504 -DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
              LE++      PD  TF C++  C     +  G+ V + M    G+  D    + MI 
Sbjct: 195 HTFLELISVTEFQPDNFTFPCLIKACTGKCDIHLGKSV-HGMAVKMGLIMDLFVGNAMIA 253

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
           + G+ G LD+A EL  + P   + + W+SL+R    +G  +   R    L+E
Sbjct: 254 LYGKCGFLDEAVELFDKMP-EQNLISWNSLIRGFSENGFWLEAYRAFRSLLE 304


>gi|357446017|ref|XP_003593286.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355482334|gb|AES63537.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 622

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 180/583 (30%), Positives = 300/583 (51%), Gaps = 24/583 (4%)

Query: 93  QALYLYDEM--VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           Q L  + ++   +H          SV+  CS   F+  G Q+HC     G   +  + + 
Sbjct: 47  QTLQFFTQLHFSAHHFNSIPFVLPSVIKACSFTHFHAFGTQLHCLAFITGSYTDPIVSNS 106

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           ++ +Y +      A  +FD +P R+  TWN M+ A+ +     E L+M       G  P 
Sbjct: 107 IISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGFLPK 166

Query: 211 GLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWVDV--NIFVANALVDFYSACGSLIEA 266
                 MV  C   M L    G+Q+H  V+  G + +  ++F++ A VDFY  CG  + A
Sbjct: 167 PELLASMVSMCGREMDLGWRIGRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGDSLMA 226

Query: 267 KKSFDFIPVDDVISWNSIVSIYA---DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
           +  FD + V + +SW +++S  A   DYD+   AL  +  MQ+    P+  + +  L   
Sbjct: 227 RSVFDEMEVKNEVSWTAVISGCANNQDYDV---ALACYREMQVEGVSPNRVTLIALLAAC 283

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQS-ALTDMYGKC-NVIESSVAVFESAPGRSLE 381
           +R G V +GK+IHGY  + GFD  S H  S AL  +Y +C   +  +  +FE +  R + 
Sbjct: 284 ARPGFVKYGKEIHGYAFRRGFD--SCHSFSPALIYLYCECGQSLHLAERIFEGSSLRDVV 341

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---L 438
             +S++ S    G    A+++F  M  E    + VTL        +SA  NL S +   +
Sbjct: 342 LWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAV-----ISACTNLSSFKHGGV 396

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +H   +K G   +I V  +L++ Y++CG ++ S ++F ++PS + V + S+++ Y  +G 
Sbjct: 397 IHGYILKFGIGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGY 456

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
           G +AL     M +RG+  D VTFL VL+ CNH+G+V EGQ +F  + +   I    +HY+
Sbjct: 457 GEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQVNADCEIPITIEHYA 516

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           C+ID+ GR+G L+ A E+L+  P      +WSSL+ SC++HG   I   +++ L+  EP 
Sbjct: 517 CLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHGRLDIAESLSSQLIRSEPN 576

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           + A Y+ +S  ++E G +    Q+RET   ++L +  G S IE
Sbjct: 577 NAASYTLLSMIHAEKGRWLDIEQVRETMKLQRLRKCYGFSRIE 619



 Score =  159 bits (403), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 121/459 (26%), Positives = 219/459 (47%), Gaps = 12/459 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  I  + K   + SA+++FD MP RD +T+N +I+   +     +AL +  +    G 
Sbjct: 104 SNSIISMYAKFFDIESARQVFDTMPHRDTITWNSMINAYLQNGLLVEALQMLKDFYFLGF 163

Query: 107 KESASTFSSVLSVCS---NAGFYTEGIQIHCRVLSLG---FGLNLYIGSPLVDLYMRMGP 160
                  +S++S+C    + G+   G QIH  V+  G      ++++ +  VD Y R G 
Sbjct: 164 LPKPELLASMVSMCGREMDLGWRI-GRQIHGLVVVDGRIRIQHSVFLSTAFVDFYFRCGD 222

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
           S+ A  +FDE+  +N  +W  ++         D  L  Y +M+ EGV PN ++   ++  
Sbjct: 223 SLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYREMQVEGVSPNRVTLIALLAA 282

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG-SLIEAKKSFDFIPVDDVI 279
           C+    +  GK++H +  + G+   + F + AL+  Y  CG SL  A++ F+   + DV+
Sbjct: 283 CARPGFVKYGKEIHGYAFRRGFDSCHSF-SPALIYLYCECGQSLHLAERIFEGSSLRDVV 341

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
            W+SI+  YA       AL+LF +M+     P+  + +  ++  +   +   G  IHGY+
Sbjct: 342 LWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYI 401

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G    S+ V +AL +MY KC  ++ S  +F   P R     NS++++    G  + A
Sbjct: 402 LKFGIGF-SIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQA 460

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           ++ F  M + G+ LD VT    L A + +     G  +L             I     L+
Sbjct: 461 LQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQ-QLFEQVNADCEIPITIEHYACLI 519

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG 497
           D + R G +E + ++   +P  P+   ++S+++    +G
Sbjct: 520 DLHGRSGKLEDALEILRTMPMKPSARIWSSLVSSCKLHG 558



 Score =  149 bits (376), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 93/351 (26%), Positives = 178/351 (50%), Gaps = 3/351 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +++ S   +D + + G    A+ +FDEM  ++ V++  +ISGC   +    AL  Y E
Sbjct: 204 QHSVFLSTAFVDFYFRCGDSLMARSVFDEMEVKNEVSWTAVISGCANNQDYDVALACYRE 263

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G+  +  T  ++L+ C+  GF   G +IH      GF         L+ LY   G 
Sbjct: 264 MQVEGVSPNRVTLIALLAACARPGFVKYGKEIHGYAFRRGFDSCHSFSPALIYLYCECGQ 323

Query: 161 SVR-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
           S+  A  +F+    R++  W+ ++ ++      D+ L+++NKM+ E  EPN ++   ++ 
Sbjct: 324 SLHLAERIFEGSSLRDVVLWSSIIGSYARRGESDKALKLFNKMRTEETEPNYVTLLAVIS 383

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+       G  +H +++K G +  +IFV NAL++ Y+ CGSL +++K F  +P  D +
Sbjct: 384 ACTNLSSFKHGGVIHGYILKFG-IGFSIFVCNALINMYAKCGSLDDSRKIFLEMPSRDSV 442

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WNS++S Y  +     AL+ F+ M+    +    +F+  L+  +  G V  G+Q+   V
Sbjct: 443 TWNSMISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVLSACNHAGLVTEGQQLFEQV 502

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTS 389
                   ++   + L D++G+   +E ++ +  + P + S    +SL++S
Sbjct: 503 NADCEIPITIEHYACLIDLHGRSGKLEDALEILRTMPMKPSARIWSSLVSS 553



 Score = 82.4 bits (202), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 58/191 (30%), Positives = 98/191 (51%), Gaps = 2/191 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M + +  P   T+  +   CT++       ++  Y  +     +I+  N  I+ + K G 
Sbjct: 366 MRTEETEPNYVTLLAVISACTNLSSFKHGGVIHGYILKFGIGFSIFVCNALINMYAKCGS 425

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L+ ++K+F EMP+RD VT+N +IS  G   + +QAL  + EM   G+K  A TF +VLS 
Sbjct: 426 LDDSRKIFLEMPSRDSVTWNSMISAYGLHGYGEQALQHFYEMKERGVKLDAVTFLAVLSA 485

Query: 120 CSNAGFYTEGIQIHCRV-LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           C++AG  TEG Q+  +V       + +   + L+DL+ R G    AL++   +P +  A 
Sbjct: 486 CNHAGLVTEGQQLFEQVNADCEIPITIEHYACLIDLHGRSGKLEDALEILRTMPMKPSAR 545

Query: 179 WNLMLRAFCEL 189
               L + C+L
Sbjct: 546 IWSSLVSSCKL 556


>gi|357504423|ref|XP_003622500.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355497515|gb|AES78718.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 655

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 166/564 (29%), Positives = 300/564 (53%), Gaps = 17/564 (3%)

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           S+ L + +  G+  EG Q+H  ++  GF   L + + ++ +Y++   +  A  LF+ELP 
Sbjct: 64  SNALKISAKKGYLPEGKQLHAHLIKFGFCQVLSLQNQILSVYLKCQEAEDAKKLFEELPV 123

Query: 174 RNLATWNLMLRAFCELSRPDE--------VLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           RN+ +WN+M+RA   + R DE            + +M  E + P+ ++F  ++  C+   
Sbjct: 124 RNVVSWNIMIRA--SVGRNDENESSGMRLCFSYFRRMLLEMMVPDHITFNGLICLCTQFN 181

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            ++ G QLH   +K+G+ D++ FV  ALV  Y+ CG +  A++ F  +   D++ WN +V
Sbjct: 182 DIEMGVQLHCFTVKVGF-DLDCFVGCALVGLYAKCGFVENARRVFCDVSCRDLVMWNVMV 240

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY--FGKQIHGYVTKLG 343
           S Y    L  +A  +F  M+L        +F   L+  S     Y  FGKQ+H  V +  
Sbjct: 241 SCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVISDDALEYYDFGKQVHSLVLRQS 300

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           FD   V V SAL +MY K   I  +  VF+    R++   N+++    + G+  + +++ 
Sbjct: 301 FD-SDVLVASALINMYAKSENIIDARRVFDEMSIRNVVAWNTMIVGFGNHGDGNEVMKLV 359

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M+ EG   DE+T+S+ + +   +++  +     +H  A+K   +  ++V+ SL+ AYS
Sbjct: 360 KEMLREGFLPDELTISSIISSCGYASA--ITETLQVHAFAVKLSCQDFLSVANSLISAYS 417

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG I  + + FE    P++V +TS++  Y+ +G+  ++ +M E M+  G+ PD++ FL 
Sbjct: 418 KCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLAEKSTEMFEKMLSYGIKPDRIAFLG 477

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL+ C H G+V +G   F  M + Y I  D +HY+C++D+LGR G++++A E+L+  P  
Sbjct: 478 VLSACAHCGLVTKGLHYFKLMTNAYQIVPDSEHYTCLVDLLGRYGLINEAFEILRSMPIE 537

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
            D     + + SC++H N  + +  A  L  +EP     Y+ +SN ++    +    +IR
Sbjct: 538 VDSDTLGAFIGSCKLHSNMELAKLAAEKLFLIEPEKSVNYAVMSNIFASQKHWYDVERIR 597

Query: 644 ETALARKLTRDIGHSLIEV-NSCH 666
           +T   ++  +  G S IE+ N  H
Sbjct: 598 KTMEDKRDAKVPGCSWIEIGNQIH 621



 Score =  146 bits (368), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 113/474 (23%), Positives = 217/474 (45%), Gaps = 50/474 (10%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI-SGCGKFRHPKQA-----LYLYDEM 101
           N+ +  ++K      AKKLF+E+P R++V++N++I +  G+    + +        +  M
Sbjct: 99  NQILSVYLKCQEAEDAKKLFEELPVRNVVSWNIMIRASVGRNDENESSGMRLCFSYFRRM 158

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +   +     TF+ ++ +C+       G+Q+HC  + +GF L+ ++G  LV LY + G  
Sbjct: 159 LLEMMVPDHITFNGLICLCTQFNDIEMGVQLHCFTVKVGFDLDCFVGCALVGLYAKCGFV 218

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F ++  R+L  WN+M+  +   S P+E  R++N M+ + V  +  +F  ++   
Sbjct: 219 ENARRVFCDVSCRDLVMWNVMVSCYVFNSLPEEAFRVFNSMRLDVVNGDEFTFSSLLSVI 278

Query: 222 SIGML--LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
           S   L   D GKQ+HS V++  + D ++ VA+AL++ Y+   ++I+A++ FD + + +V+
Sbjct: 279 SDDALEYYDFGKQVHSLVLRQSF-DSDVLVASALINMYAKSENIIDARRVFDEMSIRNVV 337

Query: 280 SWNSIV---SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +WN+++     + D + +   ++   R        +I S +    +AS         Q+H
Sbjct: 338 AWNTMIVGFGNHGDGNEVMKLVKEMLREGFLPDELTISSIISSCGYASAITETL---QVH 394

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            +  KL      + V ++L   Y KC  I S+   FE      L    SL+ +    G  
Sbjct: 395 AFAVKLSC-QDFLSVANSLISAYSKCGSITSAFKCFELTSQPDLVTWTSLIYAYAFHGLA 453

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           + + EMF  M+  GI  D +     L A +             HC  +  G         
Sbjct: 454 EKSTEMFEKMLSYGIKPDRIAFLGVLSACA-------------HCGLVTKGLH------- 493

Query: 457 SLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
                     + +L    ++ +P S +  C   ++  Y   G+  EA ++L  M
Sbjct: 494 ----------YFKLMTNAYQIVPDSEHYTCLVDLLGRY---GLINEAFEILRSM 534


>gi|356495448|ref|XP_003516589.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Glycine max]
          Length = 667

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/565 (28%), Positives = 290/565 (51%), Gaps = 35/565 (6%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +H +++  G    +     L+ L ++ G    A  LFD++P+ N   +N ++R +   + 
Sbjct: 58  VHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSND 117

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
           P + L ++ +M + G  PN  +F ++++ C+      E   +H+  IKLG +  +  V N
Sbjct: 118 PMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLG-MGPHACVQN 176

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           A++  Y AC  ++ A++ FD I    ++SWNS+++ Y+      +A+ LF  M       
Sbjct: 177 AILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEA 236

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN-------- 363
            + + V  L+ +S+  N+  G+ +H Y+   G +  S+ V +AL DMY KC         
Sbjct: 237 DVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSI-VTNALIDMYAKCGHLQFAKHV 295

Query: 364 -----------------------VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
                                  ++E++V +F   P +++   NS++  L+  G   +AV
Sbjct: 296 FDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAV 355

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           E+F  M   G+  D+ TL + L   S +    LG  +  HC    +    ++ +  SL+D
Sbjct: 356 ELFHRMCISGVMPDDATLVSILSCCSNTGDLALG--KQAHCYICDNIITVSVTLCNSLID 413

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG ++ +  +F  +P  NVV +  I+   + +G G EA++M + M   GL PD++T
Sbjct: 414 MYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEIT 473

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F  +L+ C+HSG+V  G+  F+ M S + I    +HY+CM+D+LGR G L +A  L+Q+ 
Sbjct: 474 FTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKM 533

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D ++W +LL +CR++GN  I +++   L+EL   +  +Y  +SN YSE   ++   
Sbjct: 534 PVKPDVVVWGALLGACRIYGNLEIAKQIMKQLLELGRFNSGLYVLLSNMYSESQRWDDMK 593

Query: 641 QIRETALARKLTRDIGHSLIEVNSC 665
           +IR+      + +    S IE++ C
Sbjct: 594 KIRKIMDDSGIKKCRAISFIEIDGC 618



 Score =  192 bits (488), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 134/494 (27%), Positives = 241/494 (48%), Gaps = 41/494 (8%)

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           V+ G L  A  LFD++P  +   YN LI G      P ++L L+ +MVS G   +  TF 
Sbjct: 82  VQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNSNDPMKSLLLFRQMVSAGPMPNQFTFP 141

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
            VL  C+   FY E + +H + + LG G +  + + ++  Y+     + A  +FD++ +R
Sbjct: 142 FVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQNAILTAYVACRLILSARQVFDDISDR 201

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
            + +WN M+  + ++   DE + ++ +M   GVE +  +   ++   S    LD G+ +H
Sbjct: 202 TIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGVEADVFTLVSLLSASSKHCNLDLGRFVH 261

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
            +++  G V+++  V NAL+D Y+ CG L  AK  FD +   DV+SW S+V+ YA+  L+
Sbjct: 262 LYIVITG-VEIDSIVTNALIDMYAKCGHLQFAKHVFDQMLDKDVVSWTSMVNAYANQGLV 320

Query: 295 -------------------------------FDALELFFRMQLCRKRPSIRSFVEFLNFA 323
                                           +A+ELF RM +    P   + V  L+  
Sbjct: 321 ENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMCISGVMPDDATLVSILSCC 380

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           S TG++  GKQ H Y+        SV + ++L DMY KC  +++++ +F   P +++   
Sbjct: 381 SNTGDLALGKQAHCYICD-NIITVSVTLCNSLIDMYAKCGALQTAIDIFFGMPEKNVVSW 439

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLH 440
           N ++ +L   G  ++A+EMF  M   G+  DE+T +  L A S S   ++G      ++ 
Sbjct: 440 NVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACSHSGLVDMGRYYFDIMIS 499

Query: 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMG 499
              I  G E     +C ++D   R G +  +  + +K+P  P+VV + +++      G  
Sbjct: 500 TFRISPGVEH---YAC-MVDLLGRGGFLGEAMTLIQKMPVKPDVVVWGALLGACRIYGNL 555

Query: 500 REALDMLEVMIQRG 513
             A  +++ +++ G
Sbjct: 556 EIAKQIMKQLLELG 569



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 83/366 (22%), Positives = 165/366 (45%), Gaps = 42/366 (11%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
            N  +  +V    + SA+++FD++  R +V++N +I+G  K     +A+ L+ EM+  G+
Sbjct: 175 QNAILTAYVACRLILSARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGV 234

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR--------- 157
           +    T  S+LS  S       G  +H  ++  G  ++  + + L+D+Y +         
Sbjct: 235 EADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKH 294

Query: 158 ----------------------MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEV 195
                                  G    A+ +F+ +P +N+ +WN ++    +  +  E 
Sbjct: 295 VFDQMLDKDVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEA 354

Query: 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
           + ++++M   GV P+  +   ++  CS    L  GKQ H ++     + V++ + N+L+D
Sbjct: 355 VELFHRMCISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICD-NIITVSVTLCNSLID 413

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            Y+ CG+L  A   F  +P  +V+SWN I+   A +    +A+E+F  MQ     P   +
Sbjct: 414 MYAKCGALQTAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEIT 473

Query: 316 FVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           F   L+  S +G V     YF   I  +    G +H      + + D+ G+   +  ++ 
Sbjct: 474 FTGLLSACSHSGLVDMGRYYFDIMISTFRISPGVEH-----YACMVDLLGRGGFLGEAMT 528

Query: 371 VFESAP 376
           + +  P
Sbjct: 529 LIQKMP 534



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 64/255 (25%), Positives = 129/255 (50%), Gaps = 4/255 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++ S    ++ +   G + +A ++F+ MP +++V++N +I    +     +A+ L+  M 
Sbjct: 303 DVVSWTSMVNAYANQGLVENAVQIFNHMPVKNVVSWNSIICCLVQEGQYTEAVELFHRMC 362

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+    +T  S+LS CSN G    G Q HC +      +++ + + L+D+Y + G   
Sbjct: 363 ISGVMPDDATLVSILSCCSNTGDLALGKQAHCYICDNIITVSVTLCNSLIDMYAKCGALQ 422

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+D+F  +PE+N+ +WN+++ A       +E + M+  M+A G+ P+ ++F  ++  CS
Sbjct: 423 TAIDIFFGMPEKNVVSWNVIIGALALHGFGEEAIEMFKSMQASGLYPDEITFTGLLSACS 482

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              L+D G+     +I    +   +     +VD     G L EA      +PV  DV+ W
Sbjct: 483 HSGLVDMGRYYFDIMISTFRISPGVEHYACMVDLLGRGGFLGEAMTLIQKMPVKPDVVVW 542

Query: 282 NSIVS---IYADYDL 293
            +++    IY + ++
Sbjct: 543 GALLGACRIYGNLEI 557



 Score = 53.9 bits (128), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 55/251 (21%), Positives = 105/251 (41%), Gaps = 36/251 (14%)

Query: 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
           +L+H   I  G  + +     L+    + G +  +H +F++IP PN   +  ++ GYS +
Sbjct: 56  KLVHAQIILHGLAAQVVTLGKLLSLCVQEGDLRYAHLLFDQIPQPNKFMYNHLIRGYSNS 115

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-----------HSGMVKEG-------- 537
               ++L +   M+  G +P++ TF  VL  C            H+  +K G        
Sbjct: 116 NDPMKSLLLFRQMVSAGPMPNQFTFPFVLKACAAKPFYWEAVIVHAQAIKLGMGPHACVQ 175

Query: 538 ----------QLVFNSMKSVYGIDADRQ--HYSCMIDMLGRAGILDKAEELLQQTPGGG- 584
                     +L+  S + V+   +DR    ++ MI    + G  D+A  L Q+    G 
Sbjct: 176 NAILTAYVACRLIL-SARQVFDDISDRTIVSWNSMIAGYSKMGFCDEAILLFQEMLQLGV 234

Query: 585 --DCMMWSSLLRSCRVHGNEIIGRRV-ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
             D     SLL +   H N  +GR V   I++    +D  V + + + Y++ G  + +  
Sbjct: 235 EADVFTLVSLLSASSKHCNLDLGRFVHLYIVITGVEIDSIVTNALIDMYAKCGHLQFAKH 294

Query: 642 IRETALARKLT 652
           + +  L + + 
Sbjct: 295 VFDQMLDKDVV 305


>gi|125550837|gb|EAY96546.1| hypothetical protein OsI_18451 [Oryza sativa Indica Group]
          Length = 591

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 177/568 (31%), Positives = 282/568 (49%), Gaps = 24/568 (4%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP-----------LVDLYMRMG 159
           + FS +L+ C   G    G  +H  V+       L    P           LV +Y R G
Sbjct: 12  ARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNALVSMYARCG 71

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSR-PDEVLRMYNKM-KAEGVEPNGLSFCYM 217
               A  +FDE+  R+  +WN ++ A    SR   + L ++ +M +++    +  +F  +
Sbjct: 72  RREDAARVFDEMRVRDAVSWNSLIAA----SRGAGDALALFRRMLRSDARACDRATFTTV 127

Query: 218 VRGCSIG--MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           +  C+      L     +H  V+  G+ +  + V NALV  Y  CGS   A++ F  +  
Sbjct: 128 LSECARAGAASLPACAMVHGLVVSCGF-EAEVPVGNALVTAYFECGSPASAERVFHGMAE 186

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +VI+W +++S  A  +L  ++  LF +M       +       L  A R+     G+Q+
Sbjct: 187 KNVITWTAMISGMARAELYKESFSLFGQMIRTVDANNATYSCTLLACA-RSLAAREGQQV 245

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG V K GF+   +HV+S L D+Y KC ++E ++ VF S           ++     +G 
Sbjct: 246 HGLVVKAGFE-ADLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGL 304

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
            + A E+F  MV  G  +DE T+ST L A   SA   LG  + +H   IK  F  N  V 
Sbjct: 305 EEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFALG--KQIHALVIKRCFGVNTYVC 362

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             L++ YS+CG +  S QVF+++PS N V + SI+  ++R+G G E   + E M   G  
Sbjct: 363 NGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAK 422

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P  VTFL +L  C+H G  K+G  + NSM S YG+    +HY+C++DMLGRAG+LD A+ 
Sbjct: 423 PTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAKS 482

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            ++  P     ++W +L+ +C  HGN  +G+  A  L+ L+P   A Y  +SN YS  G 
Sbjct: 483 FIEDGPFTDSALLWQALMGACSFHGNSEVGKHAAEKLLLLDPSCTAAYVLLSNIYSSEGR 542

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEVN 663
           ++   ++ +      L +D G S IE+ 
Sbjct: 543 WDDRAKVMKRMSEMGLRKDTGKSWIELE 570



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 123/480 (25%), Positives = 214/480 (44%), Gaps = 16/480 (3%)

Query: 36  CQPNPQLN--IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           C   P L   + + N  +  + + G    A ++FDEM  RD V++N LI+     R    
Sbjct: 47  CASRPWLRHVLVAWNALVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAAS---RGAGD 103

Query: 94  ALYLYDEMVSHGIKE-SASTFSSVLSVCSNAGFYT--EGIQIHCRVLSLGFGLNLYIGSP 150
           AL L+  M+    +    +TF++VLS C+ AG  +      +H  V+S GF   + +G+ 
Sbjct: 104 ALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNA 163

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV  Y   G    A  +F  + E+N+ TW  M+          E   ++ +M    V+ N
Sbjct: 164 LVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDAN 222

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             ++   +  C+  +   EG+Q+H  V+K G+ + ++ V + L+D YS CG + +A   F
Sbjct: 223 NATYSCTLLACARSLAAREGQQVHGLVVKAGF-EADLHVESGLMDVYSKCGLMEDALTVF 281

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
                 D +    I+  +A   L   A ELF  M          +    L     +    
Sbjct: 282 RSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSTVLGAFGASAPFA 341

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            GKQIH  V K  F   + +V + L +MY KC  +  SV VF+  P ++    NS++ + 
Sbjct: 342 LGKQIHALVIKRCFGVNT-YVCNGLVNMYSKCGELRESVQVFDEMPSKNSVSWNSIIAAF 400

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
              G+  +  ++F  M  +G    +VT  + L A S   SA  G   +L+  + + G   
Sbjct: 401 ARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKG-LEILNSMSSQYGVLP 459

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG---MGREALDML 506
            +     ++D   R G ++ +    E  P + + + + ++M   S +G   +G+ A + L
Sbjct: 460 RMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDSALLWQALMGACSFHGNSEVGKHAAEKL 519


>gi|15221400|ref|NP_172104.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75174948|sp|Q9LND4.1|PPR14_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g06140, mitochondrial; Flags: Precursor
 gi|8810476|gb|AAF80137.1|AC024174_19 Contains similarity to a hypothetical protein F24K9.13 gi|6006885
           from Arabidopsis thaliana gb|AC008153 and contains
           multiple PPR PF|01535 repeats [Arabidopsis thaliana]
 gi|332189825|gb|AEE27946.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 558

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 160/555 (28%), Positives = 293/555 (52%), Gaps = 13/555 (2%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-- 172
           ++L++ S A       Q+H +V+  GF   + +GS L + Y++      A   F+ +P  
Sbjct: 9   ALLTILSQAKTLNHTQQVHAKVIIHGFEDEVVLGSSLTNAYIQSNRLDFATSSFNRIPCW 68

Query: 173 ERNLATWNLMLRAFCELSR--PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +RN  +WN +L  + +       +VL +YN+M+      +  +  + ++ C    LL+ G
Sbjct: 69  KRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +H   +K G +D + +VA +LV+ Y+  G++  A+K FD IPV + + W  ++  Y  
Sbjct: 129 ILIHGLAMKNG-LDKDDYVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLK 187

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY---FGKQIHGYVTKLGFDHG 347
           Y    +   LF  M   R        +  +      GNV+    GK +HG   +  F   
Sbjct: 188 YSKDPEVFRLFCLM---RDTGLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQ 244

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           S ++Q+++ DMY KC +++++  +FE++  R++    +L++         +A ++F  M+
Sbjct: 245 SDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQML 304

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            E I  ++ TL+  L  +S S+  +L   + +H   I++G E +     S +D Y+RCG+
Sbjct: 305 RESILPNQCTLAAIL--VSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDMYARCGN 362

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           I+++  VF+ +P  NV+ ++S++N +  NG+  EALD    M  + ++P+ VTF+ +L+ 
Sbjct: 363 IQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSA 422

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+HSG VKEG   F SM   YG+  + +HY+CM+D+LGRAG + +A+  +   P      
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
            W +LL +CR+H    +   +A  L+ +EP   +VY  +SN Y++ G +E+   +R    
Sbjct: 483 AWGALLSACRIHKEVDLAGEIAEKLLSMEPEKSSVYVLLSNIYADAGMWEMVNCVRRKMG 542

Query: 648 ARKLTRDIGHSLIEV 662
            +   + +G S  EV
Sbjct: 543 IKGYRKHVGQSATEV 557



 Score =  150 bits (380), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 193/387 (49%), Gaps = 9/387 (2%)

Query: 54  FVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRH--PKQALYLYDEMVSHGIKES 109
           +++S  L+ A   F+ +P   R+  ++N ++SG  K +       L LY+ M  H   + 
Sbjct: 49  YIQSNRLDFATSSFNRIPCWKRNRHSWNTILSGYSKSKTCCYSDVLLLYNRMRRHC--DG 106

Query: 110 ASTFSSVLSV--CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             +F+ V ++  C   G    GI IH   +  G   + Y+   LV++Y ++G    A  +
Sbjct: 107 VDSFNLVFAIKACVGLGLLENGILIHGLAMKNGLDKDDYVAPSLVEMYAQLGTMESAQKV 166

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P RN   W ++++ + + S+  EV R++  M+  G+  + L+   +V+ C      
Sbjct: 167 FDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDTGLALDALTLICLVKACGNVFAG 226

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             GK +H   I+  ++D + ++  +++D Y  C  L  A+K F+     +V+ W +++S 
Sbjct: 227 KVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDNARKLFETSVDRNVVMWTTLISG 286

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +A  +   +A +LF +M      P+  +    L   S  G++  GK +HGY+ + G +  
Sbjct: 287 FAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMD 346

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V+  S   DMY +C  I+ +  VF+  P R++   +S++ +   +G  ++A++ F  M 
Sbjct: 347 AVNFTS-FIDMYARCGNIQMARTVFDMMPERNVISWSSMINAFGINGLFEEALDCFHKMK 405

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLG 434
            + +  + VT  + L A S S +   G
Sbjct: 406 SQNVVPNSVTFVSLLSACSHSGNVKEG 432



 Score =  133 bits (334), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 96/409 (23%), Positives = 199/409 (48%), Gaps = 13/409 (3%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y +   ++ + + G + SA+K+FDE+P R+ V + +L+ G  K+    +   L+  M   
Sbjct: 145 YVAPSLVEMYAQLGTMESAQKVFDEIPVRNSVLWGVLMKGYLKYSKDPEVFRLFCLMRDT 204

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVR 163
           G+   A T   ++  C N      G  +H   +   F   + Y+ + ++D+Y++      
Sbjct: 205 GLALDALTLICLVKACGNVFAGKVGKCVHGVSIRRSFIDQSDYLQASIIDMYVKCRLLDN 264

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  LF+   +RN+  W  ++  F +  R  E   ++ +M  E + PN  +   ++  CS 
Sbjct: 265 ARKLFETSVDRNVVMWTTLISGFAKCERAVEAFDLFRQMLRESILPNQCTLAAILVSCSS 324

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              L  GK +H ++I+ G ++++     + +D Y+ CG++  A+  FD +P  +VISW+S
Sbjct: 325 LGSLRHGKSVHGYMIRNG-IEMDAVNFTSFIDMYARCGNIQMARTVFDMMPERNVISWSS 383

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +++ +    L  +AL+ F +M+     P+  +FV  L+  S +GNV  G +    +T+  
Sbjct: 384 MINAFGINGLFEEALDCFHKMKSQNVVPNSVTFVSLLSACSHSGNVKEGWKQFESMTR-- 441

Query: 344 FDHGSVHVQ---SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
            D+G V  +   + + D+ G+   I  + +  ++ P + +    S   +LL +  I   V
Sbjct: 442 -DYGVVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMA---SAWGALLSACRIHKEV 497

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
           ++ G + ++ + ++    S  +   ++ A A  G   +++C   K G +
Sbjct: 498 DLAGEIAEKLLSMEPEKSSVYVLLSNIYADA--GMWEMVNCVRRKMGIK 544


>gi|28558786|gb|AAO45757.1| selenium binding protein-like protein [Cucumis melo subsp. melo]
          Length = 565

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/562 (28%), Positives = 305/562 (54%), Gaps = 12/562 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL--YMRMGPSVRALDLF 168
            ++ ++LS         E  QIH  ++      N+   S L+D      +G    A  +F
Sbjct: 3   QSYYTILSFLEKCKTMKELKQIHSLMIKTSVVKNIIPCSRLIDFCANSELGDIEYARTVF 62

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D+  +  +  WN M++ +C        L MY +M+ +G  P+  +F ++++ CS   LL 
Sbjct: 63  DQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEEMQRKGFYPDHFTFPFVLKVCSAIDLLV 122

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G+ +H+ ++K G+ +++++ ++ L++ Y +CG L    K F+FIP  +V++W S+++ +
Sbjct: 123 YGQSVHNRIVKTGF-ELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGF 181

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD--- 345
            + D   +AL LF  M+     P+  +    L  A+R  +++ GK +   + +LG D   
Sbjct: 182 VNNDQPKEALRLFKDMENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFH 241

Query: 346 ---HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
                +V + +A+ DMY KC  + ++  +F+  P R+L   NS++++    G   +A+ +
Sbjct: 242 TNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRL 301

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  M   G   ++ T  + ++A +     + G    LH   +K+ F   +A+  +LMD Y
Sbjct: 302 FVDMELAGFVPNKATFLSVIRACTHLRFRSTGQS--LHARVLKANFHEFVAIGTALMDMY 359

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTF 521
           ++ G  + + ++F K+   +V+ +T++++G +  G G+EAL++   M +   + PD++T+
Sbjct: 360 AKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEVAPDQITY 419

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + VL  C+H G+V+EGQ  F SM  VYGI+   +HY CMID+L RAG  ++AEELL + P
Sbjct: 420 IAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAEELLVKMP 479

Query: 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641
              +  + SS+L  C ++GN  +  RV + ++EL+     VY  +SN +++   +E    
Sbjct: 480 TQPNATILSSILNGCEMYGNVGLANRVKSHIVELKNSSSGVYVLLSNIHAKACNWEEMKL 539

Query: 642 IRETALARKLTRDIGHSLIEVN 663
            R+    +K+ + +G+S +E+N
Sbjct: 540 ARDILKHKKIGKTLGNSFVEMN 561



 Score =  187 bits (476), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 127/461 (27%), Positives = 222/461 (48%), Gaps = 14/461 (3%)

Query: 43  NIYSSNRTIDDFVKS--GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           NI   +R ID    S  G +  A+ +FD+     +  +N +I G         AL++Y+E
Sbjct: 36  NIIPCSRLIDFCANSELGDIEYARTVFDQTDQLTVYVWNSMIKGYCNGGDKFGALFMYEE 95

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G      TF  VL VCS       G  +H R++  GF L++Y  S L+++Y+  G 
Sbjct: 96  MQRKGFYPDHFTFPFVLKVCSAIDLLVYGQSVHNRIVKTGFELDVYTSSCLLNMYVSCGD 155

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
               L +F+ +P+ N+  W  ++  F    +P E LR++  M+ EGVEPN ++    +  
Sbjct: 156 LNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKDMENEGVEPNEITMTTALAA 215

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVD-------VNIFVANALVDFYSACGSLIEAKKSFDFI 273
            +    +  GK +   + +LG +D        N+ +A A++D Y+ CG L+ A+  FD +
Sbjct: 216 AARCRDIHTGKLVRYRLRQLG-LDPFHTNSRFNVILATAIMDMYAKCGKLVTARNLFDKM 274

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
           P  +++ WNS++S ++ Y    +AL LF  M+L    P+  +F+  +   +       G+
Sbjct: 275 PQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKATFLSVIRACTHLRFRSTGQ 334

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            +H  V K  F H  V + +AL DMY K    ++++ +F     + +    ++++ L   
Sbjct: 335 SLHARVLKANF-HEFVAIGTALMDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQ 393

Query: 394 GNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           G  K+A+ +F  M +E  +  D++T    L A S       G         +  G E  +
Sbjct: 394 GKGKEALNVFRRMEEEAEVAPDQITYIAVLWACSHLGLVEEGQKHFTSMMEV-YGIEPTM 452

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNG 492
                ++D  SR GH E + ++  K+P+ PN    +SI+NG
Sbjct: 453 EHYGCMIDLLSRAGHSEEAEELLVKMPTQPNATILSSILNG 493



 Score =  133 bits (334), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 80/272 (29%), Positives = 146/272 (53%), Gaps = 8/272 (2%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L++Y+S+  ++ +V  G LNS  K+F+ +P  ++V +  LI+G      PK+AL L+ +
Sbjct: 137 ELDVYTSSCLLNMYVSCGDLNSGLKVFEFIPKWNVVAWTSLIAGFVNNDQPKEALRLFKD 196

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG-------LNLYIGSPLVD 153
           M + G++ +  T ++ L+  +       G  +  R+  LG          N+ + + ++D
Sbjct: 197 MENEGVEPNEITMTTALAAAARCRDIHTGKLVRYRLRQLGLDPFHTNSRFNVILATAIMD 256

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G  V A +LFD++P+RNL  WN M+ AF +  R  E LR++  M+  G  PN  +
Sbjct: 257 MYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQYGRGAEALRLFVDMELAGFVPNKAT 316

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F  ++R C+       G+ LH+ V+K  + +  + +  AL+D Y+  G    A K F  +
Sbjct: 317 FLSVIRACTHLRFRSTGQSLHARVLKANFHEF-VAIGTALMDMYAKSGDADTALKIFSKL 375

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
              DV++W +++S  A      +AL +F RM+
Sbjct: 376 RKKDVMAWTTMISGLAIQGKGKEALNVFRRME 407



 Score =  115 bits (288), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 66/249 (26%), Positives = 132/249 (53%), Gaps = 2/249 (0%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
            L LD +   N + N+  +   +D + K G L +A+ LFD+MP R++V +N +IS   ++
Sbjct: 234 QLGLDPF-HTNSRFNVILATAIMDMYAKCGKLVTARNLFDKMPQRNLVVWNSMISAFSQY 292

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
               +AL L+ +M   G   + +TF SV+  C++  F + G  +H RVL   F   + IG
Sbjct: 293 GRGAEALRLFVDMELAGFVPNKATFLSVIRACTHLRFRSTGQSLHARVLKANFHEFVAIG 352

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-V 207
           + L+D+Y + G +  AL +F +L ++++  W  M+       +  E L ++ +M+ E  V
Sbjct: 353 TALMDMYAKSGDADTALKIFSKLRKKDVMAWTTMISGLAIQGKGKEALNVFRRMEEEAEV 412

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P+ +++  ++  CS   L++EG++  + ++++  ++  +     ++D  S  G   EA+
Sbjct: 413 APDQITYIAVLWACSHLGLVEEGQKHFTSMMEVYGIEPTMEHYGCMIDLLSRAGHSEEAE 472

Query: 268 KSFDFIPVD 276
           +    +P  
Sbjct: 473 ELLVKMPTQ 481


>gi|449440243|ref|XP_004137894.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Cucumis sativus]
          Length = 688

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 156/561 (27%), Positives = 296/561 (52%), Gaps = 12/561 (2%)

Query: 109 SASTFSSVLSV---CSNA-GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           ++  FS  L +    SN   F+ +   IH R+L L    + Y+ + ++   +  G +  +
Sbjct: 8   TSPVFSKALEIKNYLSNGLNFFNQLKHIHARLLRLHLDQDNYLLNLILCCALDFGSTNYS 67

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F ++ E N+  WN M+R        D+ + +Y  M+  G  PN  +  ++++ C+  
Sbjct: 68  KLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVLKACARK 127

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           + +  G ++HS ++K G+ D ++FV  +L+  Y  C +  +A K FD IP  +V+SW +I
Sbjct: 128 LDVRLGLKIHSLLVKAGY-DHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVVSWTAI 186

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y       +A+  F ++     +P   S V+ L   +R G+   G+ I  Y++  G 
Sbjct: 187 ITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYISDSGM 246

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              +V V ++L DMY KC  +E +  +F + P + +   ++++     +G  + A+++F 
Sbjct: 247 GR-NVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQALDLFF 305

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLG--SCRLLHCCAIKSGFESNIAVSCSLMDAY 462
            M  E +  D  T+   L A +   + +LG  +  L+     ++ F SN  +  +L+D Y
Sbjct: 306 QMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMD----RNEFLSNPVLGTALIDMY 361

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           S+CG +  + ++F  +   + V + ++M G S NG  +    +  ++ + G+ PD+ TF+
Sbjct: 362 SKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENTFI 421

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L GC H G V EG+  FN+MK V+ +    +HY CM+D+LGRAG+L++A +L+   P 
Sbjct: 422 GLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMVDLLGRAGLLNEAHQLINNMPM 481

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             + ++W +LL  C++H +  +  +V   L+ELEP +   Y Q+SN YS    +E + +I
Sbjct: 482 KPNAVVWGALLGGCKLHKDTHLAEQVLKKLIELEPWNSGNYVQLSNIYSGNHRWEEAEKI 541

Query: 643 RETALARKLTRDIGHSLIEVN 663
           R T   +++ +    S IE++
Sbjct: 542 RSTMKEQQIQKIRACSWIEID 562



 Score =  148 bits (373), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 106/436 (24%), Positives = 201/436 (46%), Gaps = 4/436 (0%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G  N +K +F ++   ++  +N +I G         A++LY  M   G   +  T   VL
Sbjct: 62  GSTNYSKLVFSQVKEPNIFLWNTMIRGLVSKDCFDDAIHLYGSMRGGGFLPNNFTIPFVL 121

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C+       G++IH  ++  G+  ++++ + L+ LY++      AL +FD++P++N+ 
Sbjct: 122 KACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDALKVFDDIPDKNVV 181

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  ++  +       E +  + K+   G++P+  S   ++  C+       G+ +  ++
Sbjct: 182 SWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLGDCTSGEWIDRYI 241

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
              G +  N+FVA +L+D Y  CG+L  A   F  +P  D++SW++++  YA   L   A
Sbjct: 242 SDSG-MGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQGYAFNGLPQQA 300

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L+LFF+MQ    +P   + V  L+  +  G +  G      + +  F    V + +AL D
Sbjct: 301 LDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASSLMDRNEFLSNPV-LGTALID 359

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  +  +  +F +   +     N++M  L  +G+ K    +F  +   GI  DE T
Sbjct: 360 MYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFSLFSLVEKHGIRPDENT 419

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L   +     N G     +   + S   S     C ++D   R G +  +HQ+   
Sbjct: 420 FIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGC-MVDLLGRAGLLNEAHQLINN 478

Query: 478 IP-SPNVVCFTSIMNG 492
           +P  PN V + +++ G
Sbjct: 479 MPMKPNAVVWGALLGG 494



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 84/380 (22%), Positives = 182/380 (47%), Gaps = 18/380 (4%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
            LP   TI  +   C   + +   L + S   +     +++     +  +VK  + + A 
Sbjct: 110 FLPNNFTIPFVLKACARKLDVRLGLKIHSLLVKAGYDHDVFVKTSLLSLYVKCDNFDDAL 169

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
           K+FD++P +++V++  +I+G     H ++A+  + +++  G+K  + +   VL+ C+  G
Sbjct: 170 KVFDDIPDKNVVSWTAIITGYISSGHFREAIGAFKKLLEMGLKPDSFSLVKVLAACARLG 229

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
             T G  I   +   G G N+++ + L+D+Y++ G   RA  +F  +PE+++ +W+ M++
Sbjct: 230 DCTSGEWIDRYISDSGMGRNVFVATSLLDMYVKCGNLERANLIFSAMPEKDIVSWSTMIQ 289

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            +     P + L ++ +M++E ++P+  +   ++  C+    LD G    S       +D
Sbjct: 290 GYAFNGLPQQALDLFFQMQSENLKPDCYTMVGVLSACATLGALDLGIWASS------LMD 343

Query: 245 VNIFVAN-----ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI---VSIYADYDLIFD 296
            N F++N     AL+D YS CGS+ +A + F  +   D + WN++   +S+      +F 
Sbjct: 344 RNEFLSNPVLGTALIDMYSKCGSVTQAWEIFTAMKRKDRVVWNAMMVGLSMNGHAKAVFS 403

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
              L  +  +   RP   +F+  L   +  G V  G+Q    + ++     S+     + 
Sbjct: 404 LFSLVEKHGI---RPDENTFIGLLCGCTHGGFVNEGRQFFNNMKRVFSLTPSIEHYGCMV 460

Query: 357 DMYGKCNVIESSVAVFESAP 376
           D+ G+  ++  +  +  + P
Sbjct: 461 DLLGRAGLLNEAHQLINNMP 480


>gi|297831082|ref|XP_002883423.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297329263|gb|EFH59682.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 679

 Score =  266 bits (681), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 159/541 (29%), Positives = 288/541 (53%), Gaps = 6/541 (1%)

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           ++  Q+H + +     L+    S ++ +Y  +     AL +F  L    +  W  ++R F
Sbjct: 22  SQAKQLHAQFIRTQ-SLSHTSASIVISIYTNLKLLHEALLVFKTLESPPVLAWKSVIRCF 80

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            + S     L  + +M+A G  P+   F  +++ C++ M L  G+ +H  +++LG +D +
Sbjct: 81  TDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESVHGFIVRLG-MDCD 139

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           ++  NAL++ YS    +   +K F+ +P  DV+S+N++++ YA   +  DAL +   M  
Sbjct: 140 LYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMGT 199

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +P   +    L   S   +V  GK+IHGYV + G D   V++ S+L DMY K   IE
Sbjct: 200 SDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGID-SDVYIGSSLVDMYAKSARIE 258

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            S  VF     R     NSL+   + +G   +A+ +F  MV   +    V  S+ + A +
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
             A+ +LG  + LH   ++ GF  NI ++ +L+D YS+CG+I+ + ++F+++   + V +
Sbjct: 319 HLATLHLG--KQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSW 376

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           T+I+ G++ +G G EA+ + E M ++G+ P++V F+ VL  C+H G+V E    FNSM  
Sbjct: 377 TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 436

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
           VYG++ + +HY+ + D+LGRAG L++A + + +        +WS+LL SC VH N  +  
Sbjct: 437 VYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSSCSVHKNLELAE 496

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSC 665
           +VA  +  ++  +   Y  + N Y+  G ++   ++R     + L +    S IE+ N  
Sbjct: 497 KVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGLRKKPACSWIEMKNKT 556

Query: 666 H 666
           H
Sbjct: 557 H 557



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 107/365 (29%), Positives = 193/365 (52%), Gaps = 14/365 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y+ N  ++ + K   ++S +K+F+ MP +D+V+YN +I+G  +    + AL +  EM 
Sbjct: 139 DLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMYEDALRMVREMG 198

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  +K  A T SSVL + S      +G +IH  V+  G   ++YIGS LVD+Y +     
Sbjct: 199 TSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSARIE 258

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  +F  L  R+  +WN ++  + +  R +E LR++ +M +  V P  ++F  ++  C+
Sbjct: 259 DSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPACA 318

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  GKQLH +V++ G+   NIF+A+ALVD YS CG++  A+K FD + + D +SW 
Sbjct: 319 HLATLHLGKQLHGYVLRGGF-GRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSWT 377

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHG 337
           +I+  +A +    +A+ LF  M+    +P+  +FV  L   S  G V     YF      
Sbjct: 378 AIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTKV 437

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           Y      +H      +A+ D+ G+   +E +   ++      +E   S+ ++LL S ++ 
Sbjct: 438 YGLNQELEH-----YAAVADLLGRAGKLEEA---YDFISKMRVEPTGSVWSTLLSSCSVH 489

Query: 398 DAVEM 402
             +E+
Sbjct: 490 KNLEL 494



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 123/536 (22%), Positives = 244/536 (45%), Gaps = 36/536 (6%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA 72
           I TL    T I   S +  L +       L+  S++  I  +     L+ A  +F  + +
Sbjct: 8   IKTLIKNPTRIKSKSQAKQLHAQFIRTQSLSHTSASIVISIYTNLKLLHEALLVFKTLES 67

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
             ++ +  +I          +AL  + EM + G     + F SVL  C+       G  +
Sbjct: 68  PPVLAWKSVIRCFTDQSLFSRALASFVEMRASGRCPDHNVFPSVLKSCTMMMDLRFGESV 127

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  ++ LG   +LY G+ L+++Y ++        +F+ +P +++ ++N ++  + +    
Sbjct: 128 HGFIVRLGMDCDLYTGNALMNMYSKLLGIDSVRKVFELMPRKDVVSYNTVIAGYAQSGMY 187

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           ++ LRM  +M    ++P+  +   ++   S  + + +GK++H +VI+ G +D ++++ ++
Sbjct: 188 EDALRMVREMGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKG-IDSDVYIGSS 246

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           LVD Y+    + ++++ F  +   D ISWNS+V+ Y       +AL LF +M   + RP 
Sbjct: 247 LVDMYAKSARIEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPG 306

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +F   +   +    ++ GKQ+HGYV + GF   ++ + SAL DMY KC  I+++  +F
Sbjct: 307 AVAFSSVIPACAHLATLHLGKQLHGYVLRGGFGR-NIFIASALVDMYSKCGNIQAARKIF 365

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS------ 426
           +           +++      G+  +AV +F  M  +G+  ++V     L A S      
Sbjct: 366 DRMNLHDEVSWTAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVD 425

Query: 427 ---------------------VSASANL----GSCRLLHCCAIKSGFESNIAVSCSLMDA 461
                                 +A A+L    G     +    K   E   +V  +L+ +
Sbjct: 426 EAWGYFNSMTKVYGLNQELEHYAAVADLLGRAGKLEEAYDFISKMRVEPTGSVWSTLLSS 485

Query: 462 YSRCGHIELSHQVFEK---IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
            S   ++EL+ +V EK   I S N+  +  + N Y+ NG  +E   +   + ++GL
Sbjct: 486 CSVHKNLELAEKVAEKIFTIDSENMGAYVLMCNMYASNGRWKEMAKLRLRVRKKGL 541



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 76/293 (25%), Positives = 145/293 (49%), Gaps = 12/293 (4%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M ++ L P   T++++ P  +  V +     +  Y  +     ++Y  +  +D + KS  
Sbjct: 197 MGTSDLKPDAFTLSSVLPIFSEYVDVLKGKEIHGYVIRKGIDSDVYIGSSLVDMYAKSAR 256

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  ++++F  +  RD +++N L++G  +     +AL L+ +MVS  ++  A  FSSV+  
Sbjct: 257 IEDSERVFSHLYRRDSISWNSLVAGYVQNGRYNEALRLFRQMVSAKVRPGAVAFSSVIPA 316

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++      G Q+H  VL  GFG N++I S LVD+Y + G    A  +FD +   +  +W
Sbjct: 317 CAHLATLHLGKQLHGYVLRGGFGRNIFIASALVDMYSKCGNIQAARKIFDRMNLHDEVSW 376

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             ++          E + ++ +MK +GV+PN ++F  ++  CS   L+DE     + + K
Sbjct: 377 TAIIMGHALHGHGHEAVSLFEEMKRQGVKPNQVAFVAVLTACSHVGLVDEAWGYFNSMTK 436

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI------PVDDVISWNSIVS 286
           +  ++  +    A+ D     G L EA   +DFI      P   V  W++++S
Sbjct: 437 VYGLNQELEHYAAVADLLGRAGKLEEA---YDFISKMRVEPTGSV--WSTLLS 484


>gi|242082165|ref|XP_002445851.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
 gi|241942201|gb|EES15346.1| hypothetical protein SORBIDRAFT_07g026890 [Sorghum bicolor]
          Length = 1084

 Score =  266 bits (680), Expect = 2e-68,   Method: Compositional matrix adjust.
 Identities = 160/610 (26%), Positives = 307/610 (50%), Gaps = 6/610 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMV-TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST 112
           +VK G + SA+++FD MP++  V  +NL++ G  K    +++L L+++M   GI      
Sbjct: 353 YVKCGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHA 412

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            S +L   +      +G+  H  ++ LGFG    + + L+  Y +      A+ +FD +P
Sbjct: 413 LSCLLKCITCLSCARDGLVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMP 472

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            ++  +WN ++          E + ++ +M  +G E +  +   ++  C+       G+ 
Sbjct: 473 HQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRV 532

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H + +K G +     +ANAL+D YS C       + F  +   +V+SW ++++ Y    
Sbjct: 533 VHGYSVKTGLIG-ETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAG 591

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
           L      L   M L   +P + +    L+  +   ++  GK +HGY  + G +   + V 
Sbjct: 592 LFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQGKSVHGYAIRNGMEK-LLPVA 650

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL +MY  C  +E +  VF+    + +   N+L+     +    ++  +F  M+ +   
Sbjct: 651 NALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FK 709

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            + VT++  L A++  +S   G  R +H  A++ GF  +   S +L+D Y +CG + ++ 
Sbjct: 710 PNTVTMTCILPAVASISSLERG--REIHAYALRRGFLEDSYTSNALVDMYVKCGALLVAR 767

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            +F+++   N++ +T ++ GY  +G G++A+ + E M   G+ PD  +F  +L  C HSG
Sbjct: 768 VLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSG 827

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +  EG   FN+M+  Y I+   +HY+C++D+L   G L +A E ++  P   D  +W SL
Sbjct: 828 LTAEGWKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSL 887

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L  CR+H +  +  +VA+ + +LEP +   Y  ++N Y+E   +E   +++     R L 
Sbjct: 888 LHGCRIHRDVKLAEKVADRVFKLEPENTGYYVLLANIYAEAERWEAVKKLKNKIGGRGLR 947

Query: 653 RDIGHSLIEV 662
            + G S IEV
Sbjct: 948 ENTGCSWIEV 957



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 144/564 (25%), Positives = 272/564 (48%), Gaps = 17/564 (3%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  + + G +  A ++FD M ARD +++N  ISG        +A+ L+ +M S G 
Sbjct: 236 ANALIALYSRCGCMEDAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGT 295

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF---------GLNLYIGSPLVDLYMR 157
           + S+ T  SVL  C+  GF   G  +H   +  G          G++  +GS LV +Y++
Sbjct: 296 EISSVTVLSVLPACAELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVK 355

Query: 158 MGPSVRALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
            G    A  +FD +P + N+  WNL++  + + +  +E L ++ +M   G+ P+  +   
Sbjct: 356 CGDMGSARRVFDAMPSKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSC 415

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           +++  +      +G   H +++KLG+      V NAL+ FY+    +  A   FD +P  
Sbjct: 416 LLKCITCLSCARDGLVAHGYLVKLGF-GTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQ 474

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D ISWNS++S      L  +A+ELF RM +        + +  L   +R+   + G+ +H
Sbjct: 475 DTISWNSVISGCTSNGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVH 534

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           GY  K G   G   + +AL DMY  C+   S+  +F +   +++    +++TS   +G  
Sbjct: 535 GYSVKTGLI-GETSLANALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLF 593

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
                +   MV +GI  D   +++ L   +   S   G  + +H  AI++G E  + V+ 
Sbjct: 594 DKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESLKQG--KSVHGYAIRNGMEKLLPVAN 651

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +LM+ Y  C ++E +  VF+ + + +++ + +++ GYSRN    E+  +   M+ +   P
Sbjct: 652 ALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGGYSRNNFANESFSLFSDMLLQ-FKP 710

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           + VT  C+L        ++ G+ + ++     G   D    + ++DM  + G L  A  L
Sbjct: 711 NTVTMTCILPAVASISSLERGREI-HAYALRRGFLEDSYTSNALVDMYVKCGALLVARVL 769

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHG 600
             +     + + W+ ++    +HG
Sbjct: 770 FDRLT-KKNLISWTIMIAGYGMHG 792



 Score =  189 bits (480), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 142/505 (28%), Positives = 246/505 (48%), Gaps = 16/505 (3%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPAR--DMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
            R +  ++K G L  A+ +FDEMP R  D+  +  L+S   K    ++ + L+ +M   G
Sbjct: 134 KRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCG 193

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165
           +   A   S VL   ++ G  TEG  IH  +  LG G    + + L+ LY R G    A+
Sbjct: 194 VSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEACAVANALIALYSRCGCMEDAM 253

Query: 166 DLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IG 224
            +FD +  R+  +WN  +  +      D  + +++KM +EG E + ++   ++  C+ +G
Sbjct: 254 QVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACAELG 313

Query: 225 MLLDEGKQLHSHVIKLG--W------VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             L  GK +H + +K G  W        ++  + + LV  Y  CG +  A++ FD +P  
Sbjct: 314 FEL-VGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMPSK 372

Query: 277 -DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +V  WN I+  YA      ++L LF +M      P   +    L   +       G   
Sbjct: 373 GNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDGLVA 432

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HGY+ KLGF      V +AL   Y K N+I+++V VF+  P +     NS+++    +G 
Sbjct: 433 HGYLVKLGFG-TQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGL 491

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             +A+E+F  M  +G  LD  TL + L A + S    +G  R++H  ++K+G     +++
Sbjct: 492 NSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVG--RVVHGYSVKTGLIGETSLA 549

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +L+D YS C     ++Q+F  +   NVV +T+++  Y+R G+  +   +L+ M+  G+ 
Sbjct: 550 NALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIK 609

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLV 540
           PD      VL G      +K+G+ V
Sbjct: 610 PDVFAVTSVLHGFAGDESLKQGKSV 634



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 108/446 (24%), Positives = 215/446 (48%), Gaps = 5/446 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + KS  +++A  +FD MP +D +++N +ISGC       +A+ L+  M   G +
Sbjct: 449 NALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTSNGLNSEAIELFVRMWMQGHE 508

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             ++T  SVL  C+ + ++  G  +H   +  G      + + L+D+Y           +
Sbjct: 509 LDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSLANALLDMYSNCSDWHSTNQI 568

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F  + ++N+ +W  M+ ++      D+V  +  +M  +G++P+  +   ++ G +    L
Sbjct: 569 FRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQEMVLDGIKPDVFAVTSVLHGFAGDESL 628

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            +GK +H + I+ G ++  + VANAL++ Y  C ++ EA+  FD +   D+ISWN+++  
Sbjct: 629 KQGKSVHGYAIRNG-MEKLLPVANALMEMYVNCRNMEEARLVFDHVTNKDIISWNTLIGG 687

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           Y+  +   ++  LF  M L + +P+  +    L   +   ++  G++IH Y  + GF   
Sbjct: 688 YSRNNFANESFSLFSDM-LLQFKPNTVTMTCILPAVASISSLERGREIHAYALRRGFLED 746

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           S +  +AL DMY KC  +  +  +F+    ++L     ++      G  KDAV +F  M 
Sbjct: 747 S-YTSNALVDMYVKCGALLVARVLFDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMR 805

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             G+  D  + S  L A   S     G  +  +    +   E  +     ++D  S  G+
Sbjct: 806 GSGVEPDTASFSAILYACCHSGLTAEG-WKFFNAMRKEYKIEPKLKHYTCIVDLLSHTGN 864

Query: 468 IELSHQVFEKIP-SPNVVCFTSIMNG 492
           ++ + +  E +P  P+   + S+++G
Sbjct: 865 LKEAFEFIESMPIEPDSSIWVSLLHG 890



 Score =  148 bits (374), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 126/475 (26%), Positives = 220/475 (46%), Gaps = 46/475 (9%)

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPER--NLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
           +G  LV  Y++ G    A  +FDE+P R  ++  W  ++ A+ +     E + ++ +M+ 
Sbjct: 132 LGKRLVLAYLKCGDLGGARMVFDEMPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQC 191

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
            GV P+  +   +++  +    + EG+ +H  + KLG  +    VANAL+  YS CG + 
Sbjct: 192 CGVSPDAHAVSCVLKCIASLGSITEGEVIHGLLEKLGLGEA-CAVANALIALYSRCGCME 250

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
           +A + FD +   D ISWNS +S Y        A++LF +M       S  + +  L   +
Sbjct: 251 DAMQVFDSMHARDAISWNSTISGYFSNGWHDRAVDLFSKMWSEGTEISSVTVLSVLPACA 310

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD--------MYGKCNVIESSVAVFESAP 376
             G    GK +HGY  K G       VQS + +        MY KC  + S+  VF++ P
Sbjct: 311 ELGFELVGKVVHGYSMKSGLLWDLESVQSGIDEALGSKLVFMYVKCGDMGSARRVFDAMP 370

Query: 377 GR-SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
            + ++   N +M     +   ++++ +F  M + GI  DE  LS  LK ++  + A  G 
Sbjct: 371 SKGNVHVWNLIMGGYAKAAEFEESLLLFEQMHELGITPDEHALSCLLKCITCLSCARDG- 429

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
             + H   +K GF +  AV  +L+  Y++   I+ +  VF+++P  + + + S+++G + 
Sbjct: 430 -LVAHGYLVKLGFGTQCAVCNALISFYAKSNMIDNAVLVFDRMPHQDTISWNSVISGCTS 488

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS----------------GMVKEGQL 539
           NG+  EA+++   M  +G   D  T L VL  C  S                G++ E  L
Sbjct: 489 NGLNSEAIELFVRMWMQGHELDSTTLLSVLPACARSHYWFVGRVVHGYSVKTGLIGETSL 548

Query: 540 VFNSMKSVYGIDADRQ---------------HYSCMIDMLGRAGILDKAEELLQQ 579
             N++  +Y   +D                  ++ MI    RAG+ DK   LLQ+
Sbjct: 549 A-NALLDMYSNCSDWHSTNQIFRNMAQKNVVSWTAMITSYTRAGLFDKVAGLLQE 602



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 92/189 (48%), Gaps = 8/189 (4%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+T + P   SI  L     + +Y      L + Y+SN  +D +VK G L  A+ L
Sbjct: 710 PNTVTMTCILPAVASISSLERGREIHAYALRRGFLEDSYTSNALVDMYVKCGALLVARVL 769

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD +  ++++++ ++I+G G     K A+ L+++M   G++   ++FS++L  C ++G  
Sbjct: 770 FDRLTKKNLISWTIMIAGYGMHGCGKDAVALFEQMRGSGVEPDTASFSAILYACCHSGLT 829

Query: 127 TEGIQIHC---RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLM 182
            EG +      +   +   L  Y  + +VDL    G    A +  + +P E + + W  +
Sbjct: 830 AEGWKFFNAMRKEYKIEPKLKHY--TCIVDLLSHTGNLKEAFEFIESMPIEPDSSIWVSL 887

Query: 183 LRAFCELSR 191
           L   C + R
Sbjct: 888 LHG-CRIHR 895



 Score = 47.8 bits (112), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 54/238 (22%), Positives = 106/238 (44%), Gaps = 16/238 (6%)

Query: 363 NVIESSVAVF--ESAPGRSLEC-CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            VIE++ A     + P R L    N  +  L  +G++  A+ + G   D G+G+      
Sbjct: 43  QVIEAAAAAPSPRNPPSRVLSSDVNLRIQRLCQAGDLAAALRLLG--SDGGVGVRSYCAV 100

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIA--VSCSLMDAYSRCGHIELSHQVFEK 477
             L         +L + R  H   +++G    I   +   L+ AY +CG +  +  VF++
Sbjct: 101 VQL----CGEERSLEAARRAHAL-VRAGTGGIIGSVLGKRLVLAYLKCGDLGGARMVFDE 155

Query: 478 IPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           +P    +V  +TS+M+ Y++ G  +E + +   M   G+ PD     CVL      G + 
Sbjct: 156 MPPRVADVRVWTSLMSAYAKAGDFQEGVSLFRQMQCCGVSPDAHAVSCVLKCIASLGSIT 215

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           EG+++   ++ + G+       + +I +  R G ++ A ++        D + W+S +
Sbjct: 216 EGEVIHGLLEKL-GLGEACAVANALIALYSRCGCMEDAMQVFDSMH-ARDAISWNSTI 271


>gi|58743498|gb|AAW81739.1| Putative Putative Pentatricopeptide (PPR) repeat-containing protein
           [Brassica oleracea]
          Length = 968

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 183/669 (27%), Positives = 332/669 (49%), Gaps = 17/669 (2%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAK 64
           LLP   T   +   C  +  +   L +         + +++ SN  +  +  +G ++ A 
Sbjct: 180 LLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDAL 239

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH----GIKESASTFSSVLSVC 120
           ++F  MP R++V++N +I         ++   L  +M+            +T ++VL VC
Sbjct: 240 RVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVC 299

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           +       G  +H   + L     + + + L+D+Y + G    A  +F     +N+ +WN
Sbjct: 300 ARDREIGVGKGVHGLAMKLSLDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWN 359

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEG--VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
            M+  F       +   +  +M A G  +  + ++    V  C    +L   K+LH + +
Sbjct: 360 TMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNLKELHCYSL 419

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K  +V  N  VANA V  Y+ CGSL  A + F  I    V SWN+++  Y+       +L
Sbjct: 420 KQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRLSL 479

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
           + +F+M+     P + +    L+  S+  ++  GK++HG + +   +  S  V  +L  +
Sbjct: 480 DAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLGKEVHGLIIRNRLERDSF-VYISLLSL 538

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y  C  + ++  +F++   ++L   N+++   L +G  + A+ +F  MV  G+   E+++
Sbjct: 539 YIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCEISM 598

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
            +   A S+  S  LG  R  H  A+K   E N  ++CS++D Y++ G +  S +VF  +
Sbjct: 599 MSVFGACSLLPSLRLG--REAHGYALKCLLEDNAFIACSVIDMYAKNGSVMESFKVFNGL 656

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              +V  + +++ GY  +G  +EA+ + E M + G  PD++TFL VL  CNHSG+V EG 
Sbjct: 657 KERSVASWNAMVMGYGIHGRAKEAIKLFEEMQRTGHCPDELTFLGVLTACNHSGLVHEGL 716

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK----AEELLQQTPGGGDCMMWSSLLR 594
              + MK+++G++   +HY+C+IDML RAG LD+    A E + + PG G   +W+ LL 
Sbjct: 717 TYLDQMKTLFGMNPTLKHYACVIDMLVRAGKLDEALKIATEEMSEEPGVG---IWNFLLS 773

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           SCR+H N  +G ++A  L   EP     Y  +SN Y+  G+++   ++R+      L +D
Sbjct: 774 SCRIHKNLEMGEKIAAKLFVSEPEKPENYVLLSNLYAGSGKWDEVRKVRQRMKEMSLRKD 833

Query: 655 IGHSLIEVN 663
            G S IE+N
Sbjct: 834 AGCSWIELN 842



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/491 (24%), Positives = 228/491 (46%), Gaps = 16/491 (3%)

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-GIK 107
           R I  +   G  + ++ +FD +  +++  +N +IS   +       L ++ +M++  G+ 
Sbjct: 122 RVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSRNELYHNVLEMFVKMITESGLL 181

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               TF  V+  C+       G+ +H  V+      ++++ + LV  Y   G    AL +
Sbjct: 182 PDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVEDVFVSNALVSFYGTNGSVSDALRV 241

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE----PNGLSFCYMVRGCSI 223
           F  +PERNL +WN M+R F +    +E   +  +M  +  E    P+  +   ++  C+ 
Sbjct: 242 FKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMMEKDDEIAFTPDVATLATVLPVCAR 301

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              +  GK +H   +KL  +D  + V NAL+D YS CG + +A+  F      +V+SWN+
Sbjct: 302 DREIGVGKGVHGLAMKLS-LDKEVVVNNALMDMYSKCGCINDAQVIFKLNNNKNVVSWNT 360

Query: 284 IVSIYADYDLIFDALELFFRM-----QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +V  ++    I    +L  +M      L     +I + V      S   N+   K++H Y
Sbjct: 361 MVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTILNAVPVCFEESVLPNL---KELHCY 417

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K  F H +  V +A    Y KC  +  +  VF S   +++   N+L+     S + + 
Sbjct: 418 SLKQEFVHNNELVANAFVASYAKCGSLSYAHRVFCSIRSKTVNSWNALIGGYSQSSDPRL 477

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           +++ +  M   G+  D  T+ + L A S   S  LG  + +H   I++  E +  V  SL
Sbjct: 478 SLDAYFQMKSSGLLPDLFTVCSLLSACSQIKSLKLG--KEVHGLIIRNRLERDSFVYISL 535

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y  CG +  +H +F+ +    +V + +++NGY +NG    AL +   M+  G+ P +
Sbjct: 536 LSLYIHCGELSTAHVLFDAMEDKTLVSWNTMVNGYLQNGFPERALSLFRQMVLYGVQPCE 595

Query: 519 VTFLCVLAGCN 529
           ++ + V   C+
Sbjct: 596 ISMMSVFGACS 606



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 80/306 (26%), Positives = 146/306 (47%), Gaps = 10/306 (3%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G+++H  V +   +  +  +   ++  YS CGS  +++  FD +   ++  WN+++S Y+
Sbjct: 100 GRKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYS 159

Query: 290 DYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
             +L  + LE+F +M       P   +F   +   +    V  G  +HG V K       
Sbjct: 160 RNELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVE-D 218

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV- 407
           V V +AL   YG    +  ++ VF+  P R+L   NS++     +G  ++   + G M+ 
Sbjct: 219 VFVSNALVSFYGTNGSVSDALRVFKIMPERNLVSWNSMIRVFSDNGLSEECFLLLGQMME 278

Query: 408 -DEGIGL--DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            D+ I    D  TL+T L   +      +G  + +H  A+K   +  + V+ +LMD YS+
Sbjct: 279 KDDEIAFTPDVATLATVLPVCARDREIGVG--KGVHGLAMKLSLDKEVVVNNALMDMYSK 336

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG--LIPDKVTFL 522
           CG I  +  +F+   + NVV + +++ G+S  G   +  D+L  M+  G  L  D+VT L
Sbjct: 337 CGCINDAQVIFKLNNNKNVVSWNTMVGGFSAAGDIHKTFDLLRQMLAGGGDLRADEVTIL 396

Query: 523 CVLAGC 528
             +  C
Sbjct: 397 NAVPVC 402



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 43/160 (26%), Positives = 77/160 (48%), Gaps = 4/160 (2%)

Query: 437 RLLHCCAIKSGFESNIAVSCS-LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
           R +H    +S   SN  V C+ ++  YS CG  + S  VF+ +   N+  + ++++ YSR
Sbjct: 101 RKIHQLVSESARLSNDDVLCTRVITMYSMCGSPDDSRSVFDALRKKNLFQWNAVISSYSR 160

Query: 496 NGMGREALDMLEVMI-QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR 554
           N +    L+M   MI + GL+PD  TF CV+  C     V+ G  V   +     ++ D 
Sbjct: 161 NELYHNVLEMFVKMITESGLLPDNFTFPCVVKACAGVSEVQVGLAVHGLVVKTRLVE-DV 219

Query: 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
              + ++   G  G +  A  + +  P   + + W+S++R
Sbjct: 220 FVSNALVSFYGTNGSVSDALRVFKIMP-ERNLVSWNSMIR 258


>gi|15233234|ref|NP_188214.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|218546758|sp|Q9LSB8.2|PP235_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g15930
 gi|332642227|gb|AEE75748.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 687

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/599 (28%), Positives = 306/599 (51%), Gaps = 47/599 (7%)

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY-MRMGP 160
           ++  I    S F S+L VC     +    Q+H + ++ G   N      L   +  R+G 
Sbjct: 26  ITESISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQKKLFVFWCSRLGG 82

Query: 161 SVR-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
            V  A  LF ++PE ++  WN M++ + ++    E +R+Y  M  EGV P+  +F +++ 
Sbjct: 83  HVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN 142

Query: 220 GCSI-GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           G    G  L  GK+LH HV+K G +  N++V NALV  YS CG +  A+  FD    +DV
Sbjct: 143 GLKRDGGALACGKKLHCHVVKFG-LGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            SWN ++S Y       +++EL   M+     P+  + +  L+  S+  +    K++H Y
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK- 397
           V++   +  S+ +++AL + Y  C  ++ +V +F S   R +    S++   +  GN+K 
Sbjct: 262 VSECKTE-PSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL 320

Query: 398 ------------------------------DAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
                                         +++E+F  M   G+  DE T+ + L     
Sbjct: 321 ARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL----- 375

Query: 428 SASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           +A A+LGS  +   +     K+  ++++ V  +L+D Y +CG  E + +VF  +   +  
Sbjct: 376 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 435

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T+++ G + NG G+EA+ +   M    + PD +T+L VL+ CNHSGMV + +  F  M
Sbjct: 436 TWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 495

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           +S + I+    HY CM+DMLGRAG++ +A E+L++ P   + ++W +LL + R+H +E +
Sbjct: 496 RSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPM 555

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
               A  ++ELEP + AVY+ + N Y+    ++   ++R   +   + +  G SLIEVN
Sbjct: 556 AELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614



 Score =  154 bits (388), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 228/495 (46%), Gaps = 47/495 (9%)

Query: 38  PNP----QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           PNP    +L ++  +R        GH++ A KLF ++P  D+V +N +I G  K     +
Sbjct: 64  PNPTFQKKLFVFWCSRL------GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGE 117

Query: 94  ALYLYDEMVSHGIKESASTFSSVLS-VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
            + LY  M+  G+   + TF  +L+ +  + G    G ++HC V+  G G NLY+ + LV
Sbjct: 118 GVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALV 177

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
            +Y   G    A  +FD   + ++ +WNLM+  +  +   +E + +  +M+   V P  +
Sbjct: 178 KMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSV 237

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  CS     D  K++H +V +    + ++ + NALV+ Y+ACG +  A + F  
Sbjct: 238 TLLLVLSACSKVKDKDLCKRVHEYVSECK-TEPSLRLENALVNAYAACGEMDIAVRIFRS 296

Query: 273 IPVDDVISWNSIVSIYAD---------------------YDLIFD----------ALELF 301
           +   DVISW SIV  Y +                     + ++ D          +LE+F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             MQ     P   + V  L   +  G++  G+ I  Y+ K    +  V V +AL DMY K
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVV-VGNALIDMYFK 415

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C   E +  VF     R      +++  L ++G  ++A+++F  M D  I  D++T    
Sbjct: 416 CGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGV 475

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-S 480
           L A + S   +    +           E ++     ++D   R G ++ ++++  K+P +
Sbjct: 476 LSACNHSGMVDQAR-KFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMN 534

Query: 481 PNVVCFTSIMNGYSR 495
           PN + + +++ G SR
Sbjct: 535 PNSIVWGALL-GASR 548


>gi|57899214|dbj|BAD87363.1| pentatricopeptide (PPR) repeat-containing protein-like [Oryza
           sativa Japonica Group]
 gi|222619954|gb|EEE56086.1| hypothetical protein OsJ_04925 [Oryza sativa Japonica Group]
          Length = 566

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 282/538 (52%), Gaps = 6/538 (1%)

Query: 131 QIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           Q H     LGF   N +  + L+  Y R      A  LFD++P R   TWN ++    + 
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           + PD  +  + +M   GV P   S   ++  C        G  LHS  ++ G+   ++ V
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFF-ASVVV 150

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             ALVD Y+ C  L  A++ F  +   +V ++ ++V+ +       DA+ L   M+    
Sbjct: 151 GTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGV 210

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P++ ++   L+  +   ++  GKQ+H  V K G +H    V SAL  MY KC + E  V
Sbjct: 211 APNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPF-VLSALVTMYSKCGIWEDFV 269

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            V  S   +     NS+++ L   G  K+A + F  M   G  +D  T ++ LKA  + +
Sbjct: 270 KVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKA--IGS 327

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           S++L   R +H   +K G++S + V  SL+  Y+R G I  S+ VF  + +PN+V + S+
Sbjct: 328 SSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSL 387

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV-Y 548
           M+G +++G G+E ++M E M +  + PD +TFL VL  C+H G+V +G   FN MK   Y
Sbjct: 388 MSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGY 447

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            + A  +HY+CM+D+LGRAG L++AE L+   P      ++ +LL +C++HGN  I  RV
Sbjct: 448 LVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRV 507

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSCH 666
           +  LMEL P D +V+ Q+SN ++  G +  + +IRET   + + ++   S IE    H
Sbjct: 508 SKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPSWSRIEDQMQH 565



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 195/387 (50%), Gaps = 8/387 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N +++   +  + +S  L  A+ LFD+MP R  VT+N LI G  +   P  A+  +  MV
Sbjct: 46  NPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMV 105

Query: 103 SHGIKESASTFSSVLSVC---SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
             G+  +AS+ SSVL  C    NAG    G  +H   L  GF  ++ +G+ LVD+Y +  
Sbjct: 106 RAGVSPTASSVSSVLVACVRLENAG---AGAMLHSVGLRCGFFASVVVGTALVDMYAKCR 162

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +F E+ E+N+AT+  ++  F    RP + + +  +M+  GV PN +++  ++ 
Sbjct: 163 RLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLS 222

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +    +D GKQ+H  V+K G ++ + FV +ALV  YS CG   +  K    +   D +
Sbjct: 223 SFASPEDIDHGKQVHCAVLKKG-LEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQV 281

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           S+NS++S  +      +A + F  M+       + +F   L     + ++  G+Q+H  +
Sbjct: 282 SFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLI 341

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K+G+D   V VQ++L  MY +   I  S  VF S    +L   NSLM+     G+ K+ 
Sbjct: 342 LKIGYD-SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEV 400

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALS 426
           VEMF  M    +  D +T  + L A S
Sbjct: 401 VEMFEQMRRLHVQPDHITFLSVLTACS 427



 Score = 82.4 bits (202), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 10/235 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           + +YS     +DFVK         +   +  +D V++N +ISG       K+A   + EM
Sbjct: 256 VTMYSKCGIWEDFVK---------VQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEM 306

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             HG      TF+S+L    ++    EG Q+H  +L +G+   + + + L+ +Y R G  
Sbjct: 307 RRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAI 366

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +  +F  +   NL +WN ++    +     EV+ M+ +M+   V+P+ ++F  ++  C
Sbjct: 367 GESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTAC 426

Query: 222 SIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           S   L+D+G +  + +   G+ V         +VD     G L EA+   + +P+
Sbjct: 427 SHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPI 481



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 2/144 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + + G +  +  +F  M A ++V++N L+SGC +  H K+ + ++++M    ++
Sbjct: 354 NSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQ 413

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVRAL 165
               TF SVL+ CS+ G   +G++    +   G+  G      + +VDL  R G    A 
Sbjct: 414 PDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAE 473

Query: 166 DLFDELPERNLATWNLMLRAFCEL 189
            L + +P +  A+    L + C++
Sbjct: 474 YLINGMPIKPGASVYRALLSACQI 497


>gi|302789718|ref|XP_002976627.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
 gi|300155665|gb|EFJ22296.1| hypothetical protein SELMODRAFT_105356 [Selaginella moellendorffii]
          Length = 734

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 158/561 (28%), Positives = 296/561 (52%), Gaps = 13/561 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K   L  AKK+FD +  +D+V++  +I+   +   P+ AL L+ EM   G+K + STF
Sbjct: 149 YSKCEKLGDAKKIFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTF 208

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            ++L+ C+      +G +++ R +S G+G ++++GS  V +Y R G  V A   FD L E
Sbjct: 209 VNILAACTYMDALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLRE 268

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++  +WN ++RA+ +     + L +Y +M   G EP+  +   ++  CS    L+EG+++
Sbjct: 269 KSTGSWNAIVRAYIQHGHISQALSLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERI 328

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+ +        +    +A+V  Y+ CG +  A  +F  +   +V+ WN++++ Y   + 
Sbjct: 329 HARMGD----KPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEH 384

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +AL+L+  M L      I +F   L   S   ++  G+ +H  +   G +   V +Q+
Sbjct: 385 WQEALDLYHAMNLEGLEADIYTFSSVLGACSGAKDLSEGRAVHARIVSRGLEV-VVPLQN 443

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
            L +M+ KC  +  ++ +F     R+    NS++T+    G+   A E+F  M+ EG   
Sbjct: 444 GLVNMFAKCGSLTLALEMFRGMASRNTVSWNSMVTAFCQHGDGGGAFELFKEMLLEGGEP 503

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY-----SRCGHI 468
            E T ++ L   S SA ++L   + LH     SG +S+  V+  L+  Y     ++CG +
Sbjct: 504 HEQTFTSILNFCSHSACSSLDQGKALHQRITASGVDSDPTVATCLLTMYLLNALAKCGAL 563

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           + +  VF+ I   NV+ +T+++ GY+++  G  AL++   M   G+  D++TF  +L  C
Sbjct: 564 DDARAVFDGIRGKNVLSWTAMIVGYAQHARGDGALELFREMELDGIQADEITFTSILHAC 623

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +H G+V+ G+  F SM   + I    +HY+ ++DML RAG + +AEE+ +  P      +
Sbjct: 624 SHRGLVRVGREYFRSMVEDHAIAPSAEHYNVVMDMLARAGRVGEAEEVAKVFPAIKHVAL 683

Query: 589 WSSLLRSCRVHG--NEIIGRR 607
             +L+ S +VHG  + ++ R+
Sbjct: 684 -MTLVSSSQVHGVDSSVVARK 703



 Score =  231 bits (588), Expect = 1e-57,   Method: Compositional matrix adjust.
 Identities = 146/558 (26%), Positives = 283/558 (50%), Gaps = 16/558 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N  I  +   G +  A+++FD++  R++ ++ +++S   +  H  +AL L  +M 
Sbjct: 37  DTYLGNNLIQMYGNCGCVGKAREIFDKLIDRNVYSWTIMLSAYAQNGHYMEALVLSYQMD 96

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI+ ++ TF  +L  CSN G    G +IH R++ LG+  +  + + ++ +Y +     
Sbjct: 97  LEGIRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEKLG 156

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD L  +++ +W  ++ AF +L RP   L ++ +M  +GV+PN  +F  ++  C+
Sbjct: 157 DAKKIFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILAACT 216

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L++G +L+   I  G+   ++FV +  V  YS  G+L+EAK +FD +      SWN
Sbjct: 217 YMDALEDGDKLYKRAISCGY-GADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWN 275

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +IV  Y  +  I  AL L+  M +    P   + V  L   S  G +  G++IH    ++
Sbjct: 276 AIVRAYIQHGHISQALSLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIH---ARM 332

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G D       SA+  MY KC  IE ++  F      ++   N+L+   +   + ++A+++
Sbjct: 333 G-DKPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDL 391

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           +  M  EG+  D  T S+ L A   S + +L   R +H   +  G E  + +   L++ +
Sbjct: 392 YHAMNLEGLEADIYTFSSVLGA--CSGAKDLSEGRAVHARIVSRGLEVVVPLQNGLVNMF 449

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG + L+ ++F  + S N V + S++  + ++G G  A ++ + M+  G  P + TF 
Sbjct: 450 AKCGSLTLALEMFRGMASRNTVSWNSMVTAFCQHGDGGGAFELFKEMLLEGGEPHEQTFT 509

Query: 523 CVLAGCNHSG--MVKEGQLVFNSMKSVYGIDADRQHYSCMIDM-----LGRAGILDKAEE 575
            +L  C+HS    + +G+ +   + +  G+D+D    +C++ M     L + G LD A  
Sbjct: 510 SILNFCSHSACSSLDQGKALHQRI-TASGVDSDPTVATCLLTMYLLNALAKCGALDDARA 568

Query: 576 LLQQTPGGGDCMMWSSLL 593
           +      G + + W++++
Sbjct: 569 VFDGIR-GKNVLSWTAMI 585



 Score =  189 bits (479), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 128/492 (26%), Positives = 247/492 (50%), Gaps = 9/492 (1%)

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           ++++  +L  C  +   ++G++IH ++   G   + Y+G+ L+ +Y   G   +A ++FD
Sbjct: 3   SASYGRLLRECGLSKSLSKGMEIHKKLAESGVDKDTYLGNNLIQMYGNCGCVGKAREIFD 62

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           +L +RN+ +W +ML A+ +     E L +  +M  EG+ PN ++F +++  CS    ++ 
Sbjct: 63  KLIDRNVYSWTIMLSAYAQNGHYMEALVLSYQMDLEGIRPNSVTFLWILGACSNLGDVET 122

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G+++H+ ++ LGW D +  V+ A++  YS C  L +AKK FD +   DV+SW +I++ ++
Sbjct: 123 GRKIHARMVFLGW-DTDTVVSTAILGMYSKCEKLGDAKKIFDSLRRKDVVSWTAIITAFS 181

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
                  ALELF+ M L   +P+  +FV  L   +    +  G +++      G+    V
Sbjct: 182 QLGRPRVALELFWEMDLDGVKPNESTFVNILAACTYMDALEDGDKLYKRAISCGYG-ADV 240

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V S    MY +   +  + A F+    +S    N+++ + +  G+I  A+ ++  M   
Sbjct: 241 FVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVRAYIQHGHISQALSLYKEMDVH 300

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G   D  T    L A S     +LG+         + G + +     +++  Y++CG IE
Sbjct: 301 GAEPDTFTHVCLLGACS-----SLGALEEGERIHARMGDKPDGLAGSAIVAMYAKCGGIE 355

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +   F K+ S NVV + +++ GY +    +EALD+   M   GL  D  TF  VL  C+
Sbjct: 356 HAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACS 415

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            +  + EG+ V   + S  G++      + +++M  + G L  A E+ +      + + W
Sbjct: 416 GAKDLSEGRAVHARIVS-RGLEVVVPLQNGLVNMFAKCGSLTLALEMFRGMA-SRNTVSW 473

Query: 590 SSLLRSCRVHGN 601
           +S++ +   HG+
Sbjct: 474 NSMVTAFCQHGD 485



 Score =  169 bits (427), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 123/479 (25%), Positives = 224/479 (46%), Gaps = 19/479 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  +  + + G+L  AK  FD +  +   ++N ++    +  H  QAL LY EM 
Sbjct: 239 DVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVRAYIQHGHISQALSLYKEMD 298

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            HG +    T   +L  CS+ G   EG +IH R+     GL    GS +V +Y + G   
Sbjct: 299 VHGAEPDTFTHVCLLGACSSLGALEEGERIHARMGDKPDGL---AGSAIVAMYAKCGGIE 355

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+  F ++   N+  WN ++  + +     E L +Y+ M  EG+E +  +F  ++  CS
Sbjct: 356 HAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACS 415

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L EG+ +H+ ++  G ++V + + N LV+ ++ CGSL  A + F  +   + +SWN
Sbjct: 416 GAKDLSEGRAVHARIVSRG-LEVVVPLQNGLVNMFAKCGSLTLALEMFRGMASRNTVSWN 474

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG--NVYFGKQIHGYVT 340
           S+V+ +  +     A ELF  M L    P  ++F   LNF S +   ++  GK +H  +T
Sbjct: 475 SMVTAFCQHGDGGGAFELFKEMLLEGGEPHEQTFTSILNFCSHSACSSLDQGKALHQRIT 534

Query: 341 KLGFDHGSVHVQSALTDMY-----GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
             G D     V + L  MY      KC  ++ + AVF+   G+++    +++        
Sbjct: 535 ASGVDSDPT-VATCLLTMYLLNALAKCGALDDARAVFDGIRGKNVLSWTAMIVGYAQHAR 593

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS---CRLLHCCAIKSGFESNI 452
              A+E+F  M  +GI  DE+T ++ L A S      +G      ++   AI    E   
Sbjct: 594 GDGALELFREMELDGIQADEITFTSILHACSHRGLVRVGREYFRSMVEDHAIAPSAEHYN 653

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
            V    MD  +R G +  + +V +  P+   V   ++++    +G+    +    +++Q
Sbjct: 654 VV----MDMLARAGRVGEAEEVAKVFPAIKHVALMTLVSSSQVHGVDSSVVARKRLLLQ 708


>gi|218189824|gb|EEC72251.1| hypothetical protein OsI_05387 [Oryza sativa Indica Group]
          Length = 566

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/538 (32%), Positives = 282/538 (52%), Gaps = 6/538 (1%)

Query: 131 QIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           Q H     LGF   N +  + L+  Y R      A  LFD++P R   TWN ++    + 
Sbjct: 32  QCHAAATKLGFSASNPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQS 91

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           + PD  +  + +M   GV P   S   ++  C        G  LHS  ++ G+   ++ V
Sbjct: 92  TAPDLAVAAFARMVRAGVSPTASSVSSVLVACVRLENAGAGAMLHSVGLRCGFF-ASVVV 150

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             ALVD Y+ C  L  A++ F  +   +V ++ ++V+ +       DA+ L   M+    
Sbjct: 151 GTALVDMYAKCRRLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGV 210

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P++ ++   L+  +   ++  GKQ+H  V K G +H    V SAL  MY KC + E  V
Sbjct: 211 APNLMTYSSLLSSFASPEDIDHGKQVHCAVLKKGLEHDPF-VLSALVTMYSKCGIWEDFV 269

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            V  S   +     NS+++ L   G  K+A + F  M   G  +D  T ++ LKA  + +
Sbjct: 270 KVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKA--IGS 327

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           S++L   R +H   +K G++S + V  SL+  Y+R G I  S+ VF  + +PN+V + S+
Sbjct: 328 SSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSL 387

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV-Y 548
           M+G +++G G+E ++M E M +  + PD +TFL VL  C+H G+V +G   FN MK   Y
Sbjct: 388 MSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGY 447

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            + A  +HY+CM+D+LGRAG L++AE L+   P      ++ +LL +C++HGN  I  RV
Sbjct: 448 LVGARTKHYACMVDLLGRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIAIRV 507

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSCH 666
           +  LMEL P D +V+ Q+SN ++  G +  + +IRET   + + ++   S IE    H
Sbjct: 508 SKRLMELNPHDSSVHVQLSNAFAGDGRWGNAAEIRETMSGKGIVKEPSWSRIEDQMQH 565



 Score =  172 bits (435), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 195/387 (50%), Gaps = 8/387 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N +++   +  + +S  L  A+ LFD+MP R  VT+N LI G  +   P  A+  +  MV
Sbjct: 46  NPFANTALLAFYCRSRRLREAQHLFDQMPLRTAVTWNTLIYGHAQSTAPDLAVAAFARMV 105

Query: 103 SHGIKESASTFSSVLSVC---SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
             G+  +AS+ SSVL  C    NAG    G  +H   L  GF  ++ +G+ LVD+Y +  
Sbjct: 106 RAGVSPTASSVSSVLVACVRLENAG---AGAMLHSVGLRCGFFASVVVGTALVDMYAKCR 162

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +F E+ E+N+AT+  ++  F    RP + + +  +M+  GV PN +++  ++ 
Sbjct: 163 RLGAAQQVFGEMEEKNVATFTALVTGFVLSRRPHDAVLLVREMERSGVAPNLMTYSSLLS 222

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +    +D GKQ+H  V+K G ++ + FV +ALV  YS CG   +  K    +   D +
Sbjct: 223 SFASPEDIDHGKQVHCAVLKKG-LEHDPFVLSALVTMYSKCGIWEDFVKVQMSVSCQDQV 281

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           S+NS++S  +      +A + F  M+       + +F   L     + ++  G+Q+H  +
Sbjct: 282 SFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLI 341

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K+G+D   V VQ++L  MY +   I  S  VF S    +L   NSLM+     G+ K+ 
Sbjct: 342 LKIGYD-SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEV 400

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALS 426
           VEMF  M    +  D +T  + L A S
Sbjct: 401 VEMFEQMRRLHVQPDHITFLSVLTACS 427



 Score = 82.8 bits (203), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 58/235 (24%), Positives = 110/235 (46%), Gaps = 10/235 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           + +YS     +DFVK         +   +  +D V++N +ISG       K+A   + EM
Sbjct: 256 VTMYSKCGIWEDFVK---------VQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEM 306

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             HG      TF+S+L    ++    EG Q+H  +L +G+   + + + L+ +Y R G  
Sbjct: 307 RRHGTDMDVFTFASILKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAI 366

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +  +F  +   NL +WN ++    +     EV+ M+ +M+   V+P+ ++F  ++  C
Sbjct: 367 GESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTAC 426

Query: 222 SIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           S   L+D+G +  + +   G+ V         +VD     G L EA+   + +P+
Sbjct: 427 SHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAEYLINGMPI 481



 Score = 55.5 bits (132), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 2/144 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + + G +  +  +F  M A ++V++N L+SGC +  H K+ + ++++M    ++
Sbjct: 354 NSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQ 413

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVRAL 165
               TF SVL+ CS+ G   +G++    +   G+  G      + +VDL  R G    A 
Sbjct: 414 PDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTKHYACMVDLLGRAGYLNEAE 473

Query: 166 DLFDELPERNLATWNLMLRAFCEL 189
            L + +P +  A+    L + C++
Sbjct: 474 YLINGMPIKPGASVYRALLSACQI 497


>gi|225217042|gb|ACN85326.1| EMB2261 putative [Oryza brachyantha]
          Length = 626

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 163/539 (30%), Positives = 284/539 (52%), Gaps = 10/539 (1%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV-RALDLFDELPERNLATWNLMLRAFC 187
           G  IH R    G   + Y+ + L+  Y+R+   +  AL  FD+LP R++   + +L AF 
Sbjct: 56  GYCIHARAARGGLLADRYLANALLSFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFL 115

Query: 188 ELSRPDEVLRMYNKMKAEG--VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
               P   L     M AE   V PN  +F   V+ CS+    + G  LH  ++  G+ D 
Sbjct: 116 RAGMPRRALASLRSMLAEADDVSPNAHAFSAAVKACSVLRDRNAGACLHGSILVRGFGDD 175

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +I V +ALVD Y    +  +A+K+F+ +   D I + S++S +   D   +A+  F  M 
Sbjct: 176 DI-VLSALVDMYGHASAPSDAQKAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSML 234

Query: 306 LCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           +    RP   +F   +           G+Q H  V   G   G+V V+S+  DMY KC  
Sbjct: 235 MMNGVRPDGCTFGSMMTALGNLKRENQGRQAHAQVVTRGL-CGNVIVESSTLDMYAKCGS 293

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +  VF+    R+     +L+     +G  +  V +F  M D+  G D  +L T L+A
Sbjct: 294 MVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREM-DKKDG-DWYSLGTVLRA 351

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            +  +S   G  + +HC  ++ G   ++ V  +L+D Y++CG ++ ++ VFE     N +
Sbjct: 352 CAGLSSVKPG--KEIHCRFLRMGGWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTI 409

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            + +++ G+++NG G  A+++ + M++ G  PD ++F+ VL  C+H+GMV++G+  FNSM
Sbjct: 410 TWNAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTGMVEQGRKYFNSM 469

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
            + Y I    +HY+CM+D+L R  +L++AE+L+ ++P  GD  +W+++L +   H N  +
Sbjct: 470 SNNYTIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRGDSSLWAAILGASATHSNPDV 529

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             RVA  +MEL+P     Y  + N Y  +G +E +++IR    +RK+ ++ G S I+ N
Sbjct: 530 AERVAKKMMELQPQYHLSYVLLENVYRTVGRWEDALEIRRLMESRKVKKEPGMSWIDAN 588



 Score =  143 bits (360), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 188/386 (48%), Gaps = 8/386 (2%)

Query: 45  YSSNRTIDDFVK-SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           Y +N  +  +V+   HL  A + FD++P RD+V ++ +++   +   P++AL     M++
Sbjct: 73  YLANALLSFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALASLRSMLA 132

Query: 104 HG--IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +  +A  FS+ +  CS       G  +H  +L  GFG +  + S LVD+Y      
Sbjct: 133 EADDVSPNAHAFSAAVKACSVLRDRNAGACLHGSILVRGFGDDDIVLSALVDMYGHASAP 192

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRG 220
             A   F+E+   +   +  ++ AF      +E +R +  M    GV P+G +F  M+  
Sbjct: 193 SDAQKAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPDGCTFGSMMTA 252

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
                  ++G+Q H+ V+  G    N+ V ++ +D Y+ CGS++EA+K FD + V + +S
Sbjct: 253 LGNLKRENQGRQAHAQVVTRGLCG-NVIVESSTLDMYAKCGSMVEARKVFDRMLVRNEVS 311

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +++  Y         + LF  M   +K     S    L   +   +V  GK+IH    
Sbjct: 312 WCALLGGYCQNGEYEKVVALFREMD--KKDGDWYSLGTVLRACAGLSSVKPGKEIHCRFL 369

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           ++G     V V+SAL D+Y KC  ++ +  VFE++  R+    N+++     +G+ + A+
Sbjct: 370 RMG-GWRDVVVESALVDLYAKCGAVDYAYTVFEASTVRNTITWNAMIGGFAQNGHGERAI 428

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALS 426
            +F  MV EG   D ++  + L A S
Sbjct: 429 NLFDRMVREGPRPDYISFVSVLFACS 454



 Score =  127 bits (318), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 89/335 (26%), Positives = 164/335 (48%), Gaps = 16/335 (4%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKES 109
           +D +  +   + A+K F+EM A D + Y  LIS   +    ++A+  +  M+  +G++  
Sbjct: 183 VDMYGHASAPSDAQKAFEEMRAPDGICYTSLISAFVRNDWFEEAVRWFRSMLMMNGVRPD 242

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
             TF S+++   N     +G Q H +V++ G   N+ + S  +D+Y + G  V A  +FD
Sbjct: 243 GCTFGSMMTALGNLKRENQGRQAHAQVVTRGLCGNVIVESSTLDMYAKCGSMVEARKVFD 302

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            +  RN  +W  +L  +C+    ++V+ ++ +M  +  + +  S   ++R C+    +  
Sbjct: 303 RMLVRNEVSWCALLGGYCQNGEYEKVVALFREMDKK--DGDWYSLGTVLRACAGLSSVKP 360

Query: 230 GKQLHSHVIKL-GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           GK++H   +++ GW DV   V +ALVD Y+ CG++  A   F+   V + I+WN+++  +
Sbjct: 361 GKEIHCRFLRMGGWRDV--VVESALVDLYAKCGAVDYAYTVFEASTVRNTITWNAMIGGF 418

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLG 343
           A       A+ LF RM     RP   SFV  L   S TG V     YF    + Y    G
Sbjct: 419 AQNGHGERAINLFDRMVREGPRPDYISFVSVLFACSHTGMVEQGRKYFNSMSNNYTIAPG 478

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            +H      + + D+  +  ++E +  +   +P R
Sbjct: 479 IEH-----YNCMVDLLSRVELLEEAEDLINKSPFR 508



 Score = 95.9 bits (237), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 67/252 (26%), Positives = 122/252 (48%), Gaps = 7/252 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+   + T+D + K G +  A+K+FD M  R+ V++  L+ G  +    ++ + L+ EM 
Sbjct: 277 NVIVESSTLDMYAKCGSMVEARKVFDRMLVRNEVSWCALLGGYCQNGEYEKVVALFREM- 335

Query: 103 SHGIKESASTFS--SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
               K+    +S  +VL  C+       G +IHCR L +G   ++ + S LVDLY + G 
Sbjct: 336 ---DKKDGDWYSLGTVLRACAGLSSVKPGKEIHCRFLRMGGWRDVVVESALVDLYAKCGA 392

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F+    RN  TWN M+  F +    +  + ++++M  EG  P+ +SF  ++  
Sbjct: 393 VDYAYTVFEASTVRNTITWNAMIGGFAQNGHGERAINLFDRMVREGPRPDYISFVSVLFA 452

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVI 279
           CS   ++++G++  + +     +   I   N +VD  S    L EA+   +  P   D  
Sbjct: 453 CSHTGMVEQGRKYFNSMSNNYTIAPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRGDSS 512

Query: 280 SWNSIVSIYADY 291
            W +I+   A +
Sbjct: 513 LWAAILGASATH 524


>gi|356509847|ref|XP_003523656.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1611

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 181/600 (30%), Positives = 313/600 (52%), Gaps = 16/600 (2%)

Query: 74   DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
            D++ +N  +S   +     +A+  + +M++  +     TF  +L+V +       G QIH
Sbjct: 899  DVIVWNKALSRFLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIH 958

Query: 134  CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
              V+  G    + +G+ L+++Y++ G   RA  +F ++ E +L +WN M+   C LS  +
Sbjct: 959  GIVMRSGLDQVVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISG-CTLSGLE 1017

Query: 194  EV-LRMYNKMKAEGVEPNGLSFCYMVRGCSI---GMLLDEGKQLHSHVIKLGWVDVNIFV 249
            E  + M+  +  + + P+  +   ++R CS    G  L    Q+H+  +K G V ++ FV
Sbjct: 1018 ECSVGMFVHLLRDSLLPDQFTVASVLRACSSLEGGYYL--ATQIHACAMKAGVV-LDSFV 1074

Query: 250  ANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            + AL+D YS  G + EA+  F F+  D  D+ SWN+I+  Y        AL L+  MQ  
Sbjct: 1075 STALIDVYSKRGKMEEAE--FLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQES 1132

Query: 308  RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             +R    + V     A     +  GKQIH  V K GF+   + V S + DMY KC  +ES
Sbjct: 1133 GERSDQITLVNAAKAAGGLVGLKQGKQIHAVVVKRGFNL-DLFVTSGVLDMYLKCGEMES 1191

Query: 368  SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
            +  VF   P        ++++  + +G  + A+  +  M    +  DE T +T +KA S+
Sbjct: 1192 ARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSL 1251

Query: 428  SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
              +   G  R +H   +K     +  V  SL+D Y++CG+IE +  +F++  +  +  + 
Sbjct: 1252 LTALEQG--RQIHANIVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWN 1309

Query: 488  SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
            +++ G +++G  +EAL   + M  RG++PD+VTF+ VL+ C+HSG+V E    F SM+  
Sbjct: 1310 AMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSACSHSGLVSEAYENFYSMQKN 1369

Query: 548  YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
            YGI+ + +HYSC++D L RAG +++AE+++   P      M+ +LL +CRV  +   G+R
Sbjct: 1370 YGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFEASASMYRTLLNACRVQVDRETGKR 1429

Query: 608  VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
            VA  L+ LEP D A Y  +SN Y+   ++E     R       + +D G S +++ N  H
Sbjct: 1430 VAEKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKVNVKKDPGFSWVDLKNKVH 1489



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 118/432 (27%), Positives = 214/432 (49%), Gaps = 8/432 (1%)

Query: 51   IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
            I+ +VK+G ++ A+ +F +M   D++++N +ISGC      + ++ ++  ++   +    
Sbjct: 977  INMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLLRDSLLPDQ 1036

Query: 111  STFSSVLSVCSN-AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
             T +SVL  CS+  G Y    QIH   +  G  L+ ++ + L+D+Y + G    A  LF 
Sbjct: 1037 FTVASVLRACSSLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGKMEEAEFLFV 1096

Query: 170  ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
                 +LA+WN ++  +       + LR+Y  M+  G   + ++     +     + L +
Sbjct: 1097 NQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKAAGGLVGLKQ 1156

Query: 230  GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            GKQ+H+ V+K G+ ++++FV + ++D Y  CG +  A++ F  IP  D ++W +++S   
Sbjct: 1157 GKQIHAVVVKRGF-NLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCV 1215

Query: 290  DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL--GFDHG 347
            +      AL  + +M+L + +P   +F   +   S    +  G+QIH  + KL   FD  
Sbjct: 1216 ENGQEEHALFTYHQMRLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFD-- 1273

Query: 348  SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
               V ++L DMY KC  IE +  +F+    R +   N+++  L   GN K+A++ F +M 
Sbjct: 1274 -PFVMTSLVDMYAKCGNIEDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMK 1332

Query: 408  DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
              G+  D VT    L A S S   +  +    +      G E  I     L+DA SR G 
Sbjct: 1333 SRGVMPDRVTFIGVLSACSHSGLVS-EAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGR 1391

Query: 468  IELSHQVFEKIP 479
            IE + +V   +P
Sbjct: 1392 IEEAEKVISSMP 1403



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 144/615 (23%), Positives = 273/615 (44%), Gaps = 52/615 (8%)

Query: 3    STKLLPRVRTITTLAPTCTSIV------------PLSSSLLLDSYCQPNPQLNIYSSNRT 50
            +  L PR   I +L P C SI+              + + +L S   P+     + +N  
Sbjct: 643  ANPLTPRAHLIHSL-PQCFSILRQAIAASDLSLGKRAHARILTSGHHPDR----FVTNNL 697

Query: 51   IDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQ-ALYLYDEMVSHGIK 107
            I  + K G L+SA+KLFD  P   RD+VT+N ++S             +L+  +    + 
Sbjct: 698  ITMYAKCGSLSSARKLFDTTPDTNRDLVTWNAILSALAAHADKSHDGFHLFRLLRRSVVS 757

Query: 108  ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             +  T + V  +C  +   +    +H   + +G   ++++   LV++Y + G    A  L
Sbjct: 758  TTRHTLAPVFKMCLLSASPSASESLHGYAVKIGLQWDVFVAGALVNIYAKFGLIREARVL 817

Query: 168  FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
            FD +  R++  WN+M++A+ +     E + ++++    G  P+ ++   + R       +
Sbjct: 818  FDGMAVRDVVLWNVMMKAYVDTCLEYEAMLLFSEFHRTGFRPDDVTLRTLSRVVKCKKNI 877

Query: 228  DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
             E KQ  ++  KL                Y   GS              DVI WN  +S 
Sbjct: 878  LELKQFKAYATKLF--------------MYDDDGS--------------DVIVWNKALSR 909

Query: 288  YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
            +      ++A++ F  M   R      +FV  L   +    +  GKQIHG V + G D  
Sbjct: 910  FLQRGEAWEAVDCFVDMINSRVACDGLTFVVMLTVVAGLNCLELGKQIHGIVMRSGLDQ- 968

Query: 348  SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
             V V + L +MY K   +  + +VF       L   N++++    SG  + +V MF  ++
Sbjct: 969  VVSVGNCLINMYVKAGSVSRARSVFGQMNEVDLISWNTMISGCTLSGLEECSVGMFVHLL 1028

Query: 408  DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             + +  D+ T+++ L+A S S          +H CA+K+G   +  VS +L+D YS+ G 
Sbjct: 1029 RDSLLPDQFTVASVLRACS-SLEGGYYLATQIHACAMKAGVVLDSFVSTALIDVYSKRGK 1087

Query: 468  IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
            +E +  +F      ++  + +IM+GY  +G   +AL +  +M + G   D++T +     
Sbjct: 1088 MEEAEFLFVNQDGFDLASWNAIMHGYIVSGDFPKALRLYILMQESGERSDQITLVNAAKA 1147

Query: 528  CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
                  +K+G+ + +++    G + D    S ++DM  + G ++ A  +  + P   D +
Sbjct: 1148 AGGLVGLKQGKQI-HAVVVKRGFNLDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDD-V 1205

Query: 588  MWSSLLRSCRVHGNE 602
             W++++  C  +G E
Sbjct: 1206 AWTTMISGCVENGQE 1220



 Score =  115 bits (287), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 64/235 (27%), Positives = 121/235 (51%)

Query: 42   LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
            L+++ ++  +D ++K G + SA+++F E+P+ D V +  +ISGC +    + AL+ Y +M
Sbjct: 1171 LDLFVTSGVLDMYLKCGEMESARRVFSEIPSPDDVAWTTMISGCVENGQEEHALFTYHQM 1230

Query: 102  VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
                ++    TF++++  CS      +G QIH  ++ L    + ++ + LVD+Y + G  
Sbjct: 1231 RLSKVQPDEYTFATLVKACSLLTALEQGRQIHANIVKLNCAFDPFVMTSLVDMYAKCGNI 1290

Query: 162  VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              A  LF     R +A+WN M+    +     E L+ +  MK+ GV P+ ++F  ++  C
Sbjct: 1291 EDARGLFKRTNTRRIASWNAMIVGLAQHGNAKEALQFFKYMKSRGVMPDRVTFIGVLSAC 1350

Query: 222  SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
            S   L+ E  +    + K   ++  I   + LVD  S  G + EA+K    +P +
Sbjct: 1351 SHSGLVSEAYENFYSMQKNYGIEPEIEHYSCLVDALSRAGRIEEAEKVISSMPFE 1405


>gi|9294596|dbj|BAB02877.1| unnamed protein product [Arabidopsis thaliana]
          Length = 695

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/599 (28%), Positives = 306/599 (51%), Gaps = 47/599 (7%)

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY-MRMGP 160
           ++  I    S F S+L VC     +    Q+H + ++ G   N      L   +  R+G 
Sbjct: 26  ITESISNDYSRFISILGVCKTTDQFK---QLHSQSITRGVAPNPTFQKKLFVFWCSRLGG 82

Query: 161 SVR-ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
            V  A  LF ++PE ++  WN M++ + ++    E +R+Y  M  EGV P+  +F +++ 
Sbjct: 83  HVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGEGVRLYLNMLKEGVTPDSHTFPFLLN 142

Query: 220 GCSI-GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           G    G  L  GK+LH HV+K G +  N++V NALV  YS CG +  A+  FD    +DV
Sbjct: 143 GLKRDGGALACGKKLHCHVVKFG-LGSNLYVQNALVKMYSLCGLMDMARGVFDRRCKEDV 201

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            SWN ++S Y       +++EL   M+     P+  + +  L+  S+  +    K++H Y
Sbjct: 202 FSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSVTLLLVLSACSKVKDKDLCKRVHEY 261

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK- 397
           V++   +  S+ +++AL + Y  C  ++ +V +F S   R +    S++   +  GN+K 
Sbjct: 262 VSECKTE-PSLRLENALVNAYAACGEMDIAVRIFRSMKARDVISWTSIVKGYVERGNLKL 320

Query: 398 ------------------------------DAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
                                         +++E+F  M   G+  DE T+ + L     
Sbjct: 321 ARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIFREMQSAGMIPDEFTMVSVL----- 375

Query: 428 SASANLGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           +A A+LGS  +   +     K+  ++++ V  +L+D Y +CG  E + +VF  +   +  
Sbjct: 376 TACAHLGSLEIGEWIKTYIDKNKIKNDVVVGNALIDMYFKCGCSEKAQKVFHDMDQRDKF 435

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T+++ G + NG G+EA+ +   M    + PD +T+L VL+ CNHSGMV + +  F  M
Sbjct: 436 TWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGVLSACNHSGMVDQARKFFAKM 495

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           +S + I+    HY CM+DMLGRAG++ +A E+L++ P   + ++W +LL + R+H +E +
Sbjct: 496 RSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMNPNSIVWGALLGASRLHNDEPM 555

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
               A  ++ELEP + AVY+ + N Y+    ++   ++R   +   + +  G SLIEVN
Sbjct: 556 AELAAKKILELEPDNGAVYALLCNIYAGCKRWKDLREVRRKIVDVAIKKTPGFSLIEVN 614



 Score =  154 bits (389), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 125/495 (25%), Positives = 228/495 (46%), Gaps = 47/495 (9%)

Query: 38  PNP----QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           PNP    +L ++  +R        GH++ A KLF ++P  D+V +N +I G  K     +
Sbjct: 64  PNPTFQKKLFVFWCSRL------GGHVSYAYKLFVKIPEPDVVVWNNMIKGWSKVDCDGE 117

Query: 94  ALYLYDEMVSHGIKESASTFSSVLS-VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
            + LY  M+  G+   + TF  +L+ +  + G    G ++HC V+  G G NLY+ + LV
Sbjct: 118 GVRLYLNMLKEGVTPDSHTFPFLLNGLKRDGGALACGKKLHCHVVKFGLGSNLYVQNALV 177

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
            +Y   G    A  +FD   + ++ +WNLM+  +  +   +E + +  +M+   V P  +
Sbjct: 178 KMYSLCGLMDMARGVFDRRCKEDVFSWNLMISGYNRMKEYEESIELLVEMERNLVSPTSV 237

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +   ++  CS     D  K++H +V +    + ++ + NALV+ Y+ACG +  A + F  
Sbjct: 238 TLLLVLSACSKVKDKDLCKRVHEYVSECK-TEPSLRLENALVNAYAACGEMDIAVRIFRS 296

Query: 273 IPVDDVISWNSIVSIYAD---------------------YDLIFD----------ALELF 301
           +   DVISW SIV  Y +                     + ++ D          +LE+F
Sbjct: 297 MKARDVISWTSIVKGYVERGNLKLARTYFDQMPVRDRISWTIMIDGYLRAGCFNESLEIF 356

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             MQ     P   + V  L   +  G++  G+ I  Y+ K    +  V V +AL DMY K
Sbjct: 357 REMQSAGMIPDEFTMVSVLTACAHLGSLEIGEWIKTYIDKNKIKNDVV-VGNALIDMYFK 415

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C   E +  VF     R      +++  L ++G  ++A+++F  M D  I  D++T    
Sbjct: 416 CGCSEKAQKVFHDMDQRDKFTWTAMVVGLANNGQGQEAIKVFFQMQDMSIQPDDITYLGV 475

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-S 480
           L A + S   +    +           E ++     ++D   R G ++ ++++  K+P +
Sbjct: 476 LSACNHSGMVDQAR-KFFAKMRSDHRIEPSLVHYGCMVDMLGRAGLVKEAYEILRKMPMN 534

Query: 481 PNVVCFTSIMNGYSR 495
           PN + + +++ G SR
Sbjct: 535 PNSIVWGALL-GASR 548


>gi|225454363|ref|XP_002276073.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial [Vitis vinifera]
          Length = 673

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 177/554 (31%), Positives = 300/554 (54%), Gaps = 21/554 (3%)

Query: 109 SASTFSS-VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           S  +FSS  L + +  GF   G Q+H  V+ LG    L + + ++ +Y++         +
Sbjct: 71  STHSFSSHALKISAKLGFLHGGKQLHAHVIKLGNCNLLSLQNQVLHVYVKCKEFNDVCKM 130

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRM----YNKMKAEGVEPNGLSFCYMVRGCSI 223
           FDE+P +N+ +WN ++    E +    ++R+    + +M  E + PN ++   ++R  SI
Sbjct: 131 FDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVLEMMAPNCITLNGLLRA-SI 189

Query: 224 GMLLDEG--KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
             L D G  +QLH  ++K G+ D N FV +ALVD Y+  G + EA+ +FD +   D++ W
Sbjct: 190 -ELNDVGICRQLHCFILKSGF-DSNCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLW 247

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N +VS YA   +   A  +F  M+L   +    +F   +N     G+   GKQ+HG + +
Sbjct: 248 NVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIR 307

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           L FD   V V SAL DMY K   IE +   F+    +++    +++      G+ K+A+ 
Sbjct: 308 LSFDL-DVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMR 366

Query: 402 MFGFMVDEGIGLDEVTLSTTLKAL-SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
           +   M+      DE+ L++ L +  ++SA++ +     +H   +++GFE+ ++++ +L+ 
Sbjct: 367 LLQEMIRVYTYPDELALASILSSCGNLSATSEVVQ---VHAYVVENGFEAFLSIANALVS 423

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           AYS+CG I  + Q F  +  P+++ +TS+M  Y+ +G+ +E +++ E M+   + PDKV 
Sbjct: 424 AYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVA 483

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL+ C H G V EG   FN M +VY I  D +HY+C+ID+LGRAG LD+A  LL   
Sbjct: 484 FLGVLSACAHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSM 543

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P         + L +C+VH N  + R  +  L  +EP + A YS +SN Y+ +G +    
Sbjct: 544 PVEPRSDTLGAFLGACKVHRNVGLARWASEKLFVMEPNEPANYSLMSNMYASVGHW---- 599

Query: 641 QIRETALARKLTRD 654
              + A  RKL R+
Sbjct: 600 --FDVARVRKLMRE 611



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 107/381 (28%), Positives = 182/381 (47%), Gaps = 6/381 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC----GKFRHPKQALYLYDEMVS 103
           N+ +  +VK    N   K+FDEMP +++V++N LI G      KF   +   + + +MV 
Sbjct: 112 NQVLHVYVKCKEFNDVCKMFDEMPLKNVVSWNTLICGVVEGNCKFALVRLGFHYFRQMVL 171

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
             +  +  T + +L             Q+HC +L  GF  N ++GS LVD Y + G    
Sbjct: 172 EMMAPNCITLNGLLRASIELNDVGICRQLHCFILKSGFDSNCFVGSALVDSYAKFGLVDE 231

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A   FDE+  R+L  WN+M+  +       +   ++  M+ EGV+ +  +F  M+  C +
Sbjct: 232 AQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMRLEGVKGDNFTFTSMINSCGV 291

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                 GKQ+H  +I+L + D+++ VA+ALVD YS   ++ +A+K+FD + V +++SW +
Sbjct: 292 LGSCGLGKQVHGLIIRLSF-DLDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTT 350

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++  Y  +    +A+ L   M      P   +    L+            Q+H YV + G
Sbjct: 351 MIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENG 410

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           F+   + + +AL   Y KC  I S+   F S     +    SLM +    G  K+ VE+F
Sbjct: 411 FE-AFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVF 469

Query: 404 GFMVDEGIGLDEVTLSTTLKA 424
             M+   +  D+V     L A
Sbjct: 470 EKMLFSNVRPDKVAFLGVLSA 490



 Score =  137 bits (344), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 89/339 (26%), Positives = 168/339 (49%), Gaps = 11/339 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N +  +  +D + K G ++ A+  FDE+ +RD+V +N+++S         +A  ++  M 
Sbjct: 212 NCFVGSALVDSYAKFGLVDEAQSAFDEVSSRDLVLWNVMVSCYALNGVQGKAFGVFKLMR 271

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+K    TF+S+++ C   G    G Q+H  ++ L F L++ + S LVD+Y +     
Sbjct: 272 LEGVKGDNFTFTSMINSCGVLGSCGLGKQVHGLIIRLSFDLDVLVASALVDMYSKNENIE 331

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   FD +  +N+ +W  M+  + +     E +R+  +M      P+ L+   ++  C 
Sbjct: 332 DARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEMIRVYTYPDELALASILSSCG 391

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                 E  Q+H++V++ G+ +  + +ANALV  YS CGS+  A +SF  +   D+ISW 
Sbjct: 392 NLSATSEVVQVHAYVVENGF-EAFLSIANALVSAYSKCGSIGSAFQSFSSVAEPDIISWT 450

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHG 337
           S++  YA + L  + +E+F +M     RP   +F+  L+  +  G V     YF   I+ 
Sbjct: 451 SLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSACAHGGFVLEGLHYFNLMINV 510

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           Y      +H      + + D+ G+   ++ ++ +  S P
Sbjct: 511 YQIMPDSEH-----YTCIIDLLGRAGFLDEAINLLTSMP 544



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/235 (24%), Positives = 111/235 (47%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++  ++  +D + K+ ++  A+K FD M  +++V++  +I G G+    K+A+ L  EM
Sbjct: 312 LDVLVASALVDMYSKNENIEDARKAFDGMIVKNIVSWTTMIVGYGQHGDGKEAMRLLQEM 371

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +           +S+LS C N    +E +Q+H  V+  GF   L I + LV  Y + G  
Sbjct: 372 IRVYTYPDELALASILSSCGNLSATSEVVQVHAYVVENGFEAFLSIANALVSAYSKCGSI 431

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   F  + E ++ +W  ++ A+       E + ++ KM    V P+ ++F  ++  C
Sbjct: 432 GSAFQSFSSVAEPDIISWTSLMGAYAFHGLSKEGVEVFEKMLFSNVRPDKVAFLGVLSAC 491

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           + G  + EG    + +I +  +  +      ++D     G L EA      +PV+
Sbjct: 492 AHGGFVLEGLHYFNLMINVYQIMPDSEHYTCIIDLLGRAGFLDEAINLLTSMPVE 546


>gi|147838932|emb|CAN63659.1| hypothetical protein VITISV_008415 [Vitis vinifera]
          Length = 760

 Score =  266 bits (680), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 176/643 (27%), Positives = 310/643 (48%), Gaps = 81/643 (12%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           QAL L D  V H I    ++ ++ LS         +  Q H  +L  G   + ++ + L+
Sbjct: 6   QALALLDS-VQHTILNCLNSTTASLS---------QTRQAHAHILKTGLFNDTHLATKLL 55

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
             Y        A  + D +PE N+ +++ ++ AF +  +    L  +++M   G+ P+  
Sbjct: 56  SHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNR 115

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
                V+ C+    L   +Q+H  +  +   D + FV ++LV  Y  C  + +A + FD 
Sbjct: 116 VLPSAVKACAGLSALKPARQVHG-IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDR 174

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG----- 327
           +   DV+SW+++V+ YA    + +A  LF  M     +P++ S+   +   + +G     
Sbjct: 175 MFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEA 234

Query: 328 ------------------------------NVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
                                         ++  G  IHGYV K G       V SAL D
Sbjct: 235 VLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKC-VSSALID 293

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MYGKC+       VF+      +  CN+ +  L  +G ++ ++ +F  + D+G+ L+ V+
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 418 LSTTL------------------------KALSVSASANLGSC---------RLLHCCAI 444
            ++ +                        K  SV+    L +C         +  HC ++
Sbjct: 354 WTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSL 413

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           + G  +++ V  +L+D Y++CG I+ S   F+ IP+ N+VC+ +++ GY+ +G  +EA++
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAME 473

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           + ++M + G  PD ++F CVL+ C+ SG+ +EG   FNSM S YGI+A  +HY+CM+ +L
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624
            RAG L++A  ++++ P   D  +W +LL SCRVH N  +G   A  L ELEP +   Y 
Sbjct: 534 SRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYI 593

Query: 625 QVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
            +SN Y+  G +    ++R+    + L ++ G S IEV N  H
Sbjct: 594 LLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKNKVH 636



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 116/500 (23%), Positives = 211/500 (42%), Gaps = 74/500 (14%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A  + D +P  ++ +++ LI    KF     AL  + +M++ G+        S +  C+ 
Sbjct: 67  ATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAG 126

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                   Q+H      GF  + ++ S LV +Y++      A  +FD + E ++ +W+ +
Sbjct: 127 LSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSAL 186

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC--------SIGMLLD------ 228
           + A+      DE  R++++M   GV+PN +S+  M+ G         ++ M LD      
Sbjct: 187 VAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGF 246

Query: 229 ---------------------EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
                                 G  +H +VIK G V  +  V++AL+D Y  C    E  
Sbjct: 247 EPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVS-DKCVSSALIDMYGKCSCTSEMS 305

Query: 268 KSFD-----------------------------FIPVDD------VISWNSIVSIYADYD 292
           + FD                             F  + D      V+SW S+++  +   
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNG 365

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              +ALELF  MQ+   +P+  +    L        +  GK  H +  + G     V+V 
Sbjct: 366 RDMEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIS-TDVYVG 424

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           SAL DMY KC  I++S   F+  P ++L C N+++      G  K+A+E+F  M   G  
Sbjct: 425 SALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQK 484

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D ++ +  L A S S     GS    +  + K G E+ +     ++   SR G +E ++
Sbjct: 485 PDIISFTCVLSACSQSGLTEEGS-YYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAY 543

Query: 473 QVFEKIP-SPNVVCFTSIMN 491
            +  ++P +P+   + ++++
Sbjct: 544 AMIRRMPVNPDACVWGALLS 563



 Score =  108 bits (271), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 87/408 (21%), Positives = 173/408 (42%), Gaps = 92/408 (22%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDD------- 53
           ML+  L+P  R + +    C  +  L          +P  Q++  +S    D        
Sbjct: 105 MLTRGLMPDNRVLPSAVKACAGLSAL----------KPARQVHGIASVSGFDSDSFVQSS 154

Query: 54  ----FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES 109
               ++K   +  A ++FD M   D+V+++ L++   +     +A  L+ EM   G++ +
Sbjct: 155 LVHMYIKCNQIRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPN 214

Query: 110 ASTFSSVLSVCSNAGFYTE-----------------------------------GIQIHC 134
             +++ +++  +++G Y+E                                   GI IH 
Sbjct: 215 LISWNGMIAGFNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHG 274

Query: 135 RVLSLGFGLNLYIGSPLVDLY-------------------------------MRMGPSVR 163
            V+  G   +  + S L+D+Y                                R G    
Sbjct: 275 YVIKQGLVSDKCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVES 334

Query: 164 ALDLFDELPER----NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
           +L LF +L ++    N+ +W  M+    +  R  E L ++ +M+  GV+PN ++   ++ 
Sbjct: 335 SLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALELFREMQIAGVKPNSVTIPCLLP 394

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C     L  GK  H   ++ G +  +++V +AL+D Y+ CG +  ++  FD IP  +++
Sbjct: 395 ACGNIAALMHGKAAHCFSLRRG-ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLV 453

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
            WN++++ YA +    +A+E+F  MQ   ++P I SF   L+  S++G
Sbjct: 454 CWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSG 501



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 120/251 (47%), Gaps = 5/251 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDM----VTYNLLISGCGKFRHPKQALY 96
            +++ S N  I    ++G + S+ +LF ++  + M    V++  +I+ C +     +AL 
Sbjct: 313 HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDMEALE 372

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L+ EM   G+K ++ T   +L  C N      G   HC  L  G   ++Y+GS L+D+Y 
Sbjct: 373 LFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYA 432

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    +   FD +P +NL  WN ++  +    +  E + +++ M+  G +P+ +SF  
Sbjct: 433 KCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTC 492

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++  CS   L +EG    + +     ++  +     +V   S  G L +A      +PV+
Sbjct: 493 VLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVN 552

Query: 277 -DVISWNSIVS 286
            D   W +++S
Sbjct: 553 PDACVWGALLS 563


>gi|357494773|ref|XP_003617675.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355519010|gb|AET00634.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 758

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 172/611 (28%), Positives = 307/611 (50%), Gaps = 11/611 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG---IKESA 110
           + +   +N A K+FDE+P RD+V +  L+ G  +    +  L    EM   G    K +A
Sbjct: 155 YSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGDDSQKPNA 214

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T       C N G    G  +H  V+  G G  L I S ++ +Y + G    A   F E
Sbjct: 215 RTLEGGFLACGNLGDLVSGRCLHGLVVKNGIGCLLDIQSSVLSMYCKCGVPREAYQSFSE 274

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  ++L +W  M+R +       + +R + +M    V P+G+    ++ G    + +  G
Sbjct: 275 VINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFGNSVDVYGG 334

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           K  H  +I+  +   +  V N+L+  Y   G L  A++ F       +  WN ++  Y  
Sbjct: 335 KAFHGLIIRRHYAP-DEMVDNSLLSMYCKFGMLSFAERLFQR-SQGSIEYWNFMIVGYGR 392

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                  ++LF  MQ    R      V  +    + G +  G+ IH  V K GF   ++ 
Sbjct: 393 IGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIK-GFVDETIS 451

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V ++L +MYGKC+ +  S  +F  +  R +   N+L+++ +H  + ++A+ +F  M+ E 
Sbjct: 452 VTNSLIEMYGKCDKMNVSWRIFNRSE-RDVILWNALISAHIHVKHYEEAISLFDIMIMED 510

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
              +  TL   L A S  A    G    LH    + GF+ N+ +  +L+D Y++CG +E 
Sbjct: 511 QNPNTATLVVVLSACSHLAFLEKG--ERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEK 568

Query: 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           S +VF+ +   +V+C+ ++++GY  NG    A+++  +M +  + P+++TFL +L+ C H
Sbjct: 569 SREVFDSMMEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAH 628

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +G+V+EG+ VF  M+S Y +  + +HY+CM+D+LGR+  L++AEEL+   P   D  +W 
Sbjct: 629 AGLVEEGKNVFAKMQS-YSVKPNLKHYTCMVDLLGRSCNLEEAEELVLSMPIPPDGGVWG 687

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR- 649
           +LL +C+ H    +G R+    ++ EP +   Y  V+N YS IG ++ +  +R T   R 
Sbjct: 688 ALLSACKTHNQIEMGIRIGKNAIDSEPENDGYYIMVANMYSSIGRWDEAENVRRTMKDRC 747

Query: 650 KLTRDIGHSLI 660
            + +  G S++
Sbjct: 748 SMGKKAGWSMV 758



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 106/474 (22%), Positives = 211/474 (44%), Gaps = 13/474 (2%)

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           +  H   ++ G   N +I + L+ LY  +     +  LF  LP ++   WN  L+     
Sbjct: 28  LPFHAVTVTTGNSTNPFIAAKLISLYDTLNHPTSSSTLFHSLPFKDTFLWNSFLKTLFSR 87

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           S   + L  Y+ M++E V PN  +F  +    +  M++  G  LH+   K+G+   N  V
Sbjct: 88  SLYPQFLSFYSLMRSENVLPNHFTFPMVASSYAHFMMIRSGMNLHALACKVGFFPENSAV 147

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY---ADYDLIFDALELFFRMQL 306
            ++ V  YS C  + +A K FD IPV DV++W ++V  Y    + ++  + +   +R+  
Sbjct: 148 GSSFVSLYSRCDEMNDAVKVFDEIPVRDVVAWTALVIGYVQNGESEMGLECISEMYRVGD 207

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
             ++P+ R+           G++  G+ +HG V K G     + +QS++  MY KC V  
Sbjct: 208 DSQKPNARTLEGGFLACGNLGDLVSGRCLHGLVVKNGIG-CLLDIQSSVLSMYCKCGVPR 266

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +   F     + L    S++      G + D V  F  M++  +  D + +   L    
Sbjct: 267 EAYQSFSEVINKDLLSWTSMIRVYARFGMMSDCVRFFWEMLENQVCPDGMVIGCILSGFG 326

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            S     G  +  H   I+  +  +  V  SL+  Y + G +  + ++F++    ++  +
Sbjct: 327 NSVDVYGG--KAFHGLIIRRHYAPDEMVDNSLLSMYCKFGMLSFAERLFQR-SQGSIEYW 383

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMK 545
             ++ GY R G   + + +   M   G+  + V  +  +A C   G +  G+ +  N +K
Sbjct: 384 NFMIVGYGRIGKNVKCIQLFREMQYLGIRSESVGIVSAIASCGQLGEINLGRSIHCNVIK 443

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
               +D      + +I+M G+   ++ +  +  ++    D ++W++L+ S  +H
Sbjct: 444 GF--VDETISVTNSLIEMYGKCDKMNVSWRIFNRSE--RDVILWNALI-SAHIH 492



 Score =  106 bits (265), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 129/244 (52%), Gaps = 3/244 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           I  +N  I+ + K   +N + ++F+    RD++ +N LIS     +H ++A+ L+D M+ 
Sbjct: 450 ISVTNSLIEMYGKCDKMNVSWRIFNR-SERDVILWNALISAHIHVKHYEEAISLFDIMIM 508

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
                + +T   VLS CS+  F  +G ++H  +   GF LNL +G+ LVD+Y + G   +
Sbjct: 509 EDQNPNTATLVVVLSACSHLAFLEKGERLHRYINEKGFKLNLPLGTALVDMYAKCGQLEK 568

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           + ++FD + E+++  WN M+  +      +  + ++N M+   V+PN ++F  ++  C+ 
Sbjct: 569 SREVFDSMMEKDVICWNAMISGYGMNGYAESAIEIFNLMEESNVKPNEITFLSLLSACAH 628

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWN 282
             L++EGK + + +     V  N+     +VD      +L EA++    +P+  D   W 
Sbjct: 629 AGLVEEGKNVFAKMQSYS-VKPNLKHYTCMVDLLGRSCNLEEAEELVLSMPIPPDGGVWG 687

Query: 283 SIVS 286
           +++S
Sbjct: 688 ALLS 691


>gi|225459736|ref|XP_002284744.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
          Length = 758

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 174/640 (27%), Positives = 309/640 (48%), Gaps = 80/640 (12%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           QAL L D  V H I    ++ ++ LS         +  Q H  +L  G   + ++ + L+
Sbjct: 6   QALALLDS-VQHTIFNCLNSTTASLS---------QTRQAHAHILKTGLFNDTHLATKLL 55

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
             Y        A  + D +PE N+ +++ ++ AF +  +    L  +++M   G+ P+  
Sbjct: 56  SHYANNMCFADATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNR 115

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
                V+ C+    L   +Q+H  +  +   D + FV ++LV  Y  C  + +A + FD 
Sbjct: 116 VLPSAVKACAGLSALKPARQVHG-IASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDR 174

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG----- 327
           +   DV+SW+++V+ YA    + +A  LF  M     +P++ S+   +   + +G     
Sbjct: 175 MFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEA 234

Query: 328 ------------------------------NVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
                                         ++  G  IHGYV K G       V SAL D
Sbjct: 235 VLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSDKC-VSSALID 293

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MYGKC+       VF+      +  CN+ +  L  +G ++ ++ +F  + D+G+ L+ V+
Sbjct: 294 MYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVS 353

Query: 418 LSTTL------------------------KALSVSASANLGSC---------RLLHCCAI 444
            ++ +                        K  SV+    L +C         +  HC ++
Sbjct: 354 WTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSL 413

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           + G  +++ V  +L+D Y++CG I+ S   F+ IP+ N+VC+ +++ GY+ +G  +EA++
Sbjct: 414 RRGISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAME 473

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           + ++M + G  PD ++F CVL+ C+ SG+ +EG   FNSM S YGI+A  +HY+CM+ +L
Sbjct: 474 IFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLL 533

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624
            RAG L++A  ++++ P   D  +W +LL SCRVH N  +G   A  L ELEP +   Y 
Sbjct: 534 SRAGKLEQAYAMIRRMPVNPDACVWGALLSSCRVHNNVSLGEVAAEKLFELEPSNPGNYI 593

Query: 625 QVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            +SN Y+  G +    ++R+    + L ++ G S IEV +
Sbjct: 594 LLSNIYASKGMWNEVNRVRDMMKNKGLRKNPGCSWIEVKN 633



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 116/500 (23%), Positives = 211/500 (42%), Gaps = 74/500 (14%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A  + D +P  ++ +++ LI    KF     AL  + +M++ G+        S +  C+ 
Sbjct: 67  ATLVLDLVPEPNVFSFSTLIYAFSKFHQFHHALSTFSQMLTRGLMPDNRVLPSAVKACAG 126

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                   Q+H      GF  + ++ S LV +Y++      A  +FD + E ++ +W+ +
Sbjct: 127 LSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQIRDAHRVFDRMFEPDVVSWSAL 186

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC--------SIGMLLD------ 228
           + A+      DE  R++++M   GV+PN +S+  M+ G         ++ M LD      
Sbjct: 187 VAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAGFNHSGLYSEAVLMFLDMHLRGF 246

Query: 229 ---------------------EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
                                 G  +H +VIK G V  +  V++AL+D Y  C    E  
Sbjct: 247 EPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVS-DKCVSSALIDMYGKCSCTSEMS 305

Query: 268 KSFD-----------------------------FIPVDD------VISWNSIVSIYADYD 292
           + FD                             F  + D      V+SW S+++  +   
Sbjct: 306 QVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNG 365

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              +ALELF  MQ+   +P+  +    L        +  GK  H +  + G     V+V 
Sbjct: 366 RDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGIS-TDVYVG 424

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           SAL DMY KC  I++S   F+  P ++L C N+++      G  K+A+E+F  M   G  
Sbjct: 425 SALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQK 484

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D ++ +  L A S S     GS    +  + K G E+ +     ++   SR G +E ++
Sbjct: 485 PDIISFTCVLSACSQSGLTEEGS-YYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAY 543

Query: 473 QVFEKIP-SPNVVCFTSIMN 491
            +  ++P +P+   + ++++
Sbjct: 544 AMIRRMPVNPDACVWGALLS 563



 Score =  109 bits (273), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 90/452 (19%), Positives = 189/452 (41%), Gaps = 82/452 (18%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           ML+  L+P  R + +    C  +  L  +  +      +    + +  +  +  ++K   
Sbjct: 105 MLTRGLMPDNRVLPSAVKACAGLSALKPARQVHGIASVSGFDSDSFVQSSLVHMYIKCNQ 164

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A ++FD M   D+V+++ L++   +     +A  L+ EM   G++ +  +++ +++ 
Sbjct: 165 IRDAHRVFDRMFEPDVVSWSALVAAYARQGCVDEAKRLFSEMGDSGVQPNLISWNGMIAG 224

Query: 120 CSNAGFYTE-----------------------------------GIQIHCRVLSLGFGLN 144
            +++G Y+E                                   GI IH  V+  G   +
Sbjct: 225 FNHSGLYSEAVLMFLDMHLRGFEPDGTTISSVLPAVGDLEDLVMGILIHGYVIKQGLVSD 284

Query: 145 LYIGSPLVDLY-------------------------------MRMGPSVRALDLFDELPE 173
             + S L+D+Y                                R G    +L LF +L +
Sbjct: 285 KCVSSALIDMYGKCSCTSEMSQVFDQMDHMDVGSCNAFIFGLSRNGQVESSLRLFRQLKD 344

Query: 174 R----NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           +    N+ +W  M+    +  R  E L ++ +M+  GV+PN ++   ++  C     L  
Sbjct: 345 QGMELNVVSWTSMIACCSQNGRDIEALELFREMQIAGVKPNSVTIPCLLPACGNIAALMH 404

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GK  H   ++ G +  +++V +AL+D Y+ CG +  ++  FD IP  +++ WN++++ YA
Sbjct: 405 GKAAHCFSLRRG-ISTDVYVGSALIDMYAKCGRIQASRICFDGIPTKNLVCWNAVIAGYA 463

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT-----GNVYFGKQIHGYVTKLGF 344
            +    +A+E+F  MQ   ++P I SF   L+  S++     G+ YF      Y  +   
Sbjct: 464 MHGKAKEAMEIFDLMQRSGQKPDIISFTCVLSACSQSGLTEEGSYYFNSMSSKYGIEARV 523

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           +H      + +  +  +   +E + A+    P
Sbjct: 524 EH-----YACMVTLLSRAGKLEQAYAMIRRMP 550



 Score =  101 bits (251), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 62/251 (24%), Positives = 120/251 (47%), Gaps = 5/251 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDM----VTYNLLISGCGKFRHPKQALY 96
            +++ S N  I    ++G + S+ +LF ++  + M    V++  +I+ C +     +AL 
Sbjct: 313 HMDVGSCNAFIFGLSRNGQVESSLRLFRQLKDQGMELNVVSWTSMIACCSQNGRDIEALE 372

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L+ EM   G+K ++ T   +L  C N      G   HC  L  G   ++Y+GS L+D+Y 
Sbjct: 373 LFREMQIAGVKPNSVTIPCLLPACGNIAALMHGKAAHCFSLRRGISTDVYVGSALIDMYA 432

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    +   FD +P +NL  WN ++  +    +  E + +++ M+  G +P+ +SF  
Sbjct: 433 KCGRIQASRICFDGIPTKNLVCWNAVIAGYAMHGKAKEAMEIFDLMQRSGQKPDIISFTC 492

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++  CS   L +EG    + +     ++  +     +V   S  G L +A      +PV+
Sbjct: 493 VLSACSQSGLTEEGSYYFNSMSSKYGIEARVEHYACMVTLLSRAGKLEQAYAMIRRMPVN 552

Query: 277 -DVISWNSIVS 286
            D   W +++S
Sbjct: 553 PDACVWGALLS 563


>gi|302785117|ref|XP_002974330.1| hypothetical protein SELMODRAFT_50864 [Selaginella moellendorffii]
 gi|300157928|gb|EFJ24552.1| hypothetical protein SELMODRAFT_50864 [Selaginella moellendorffii]
          Length = 720

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 167/572 (29%), Positives = 300/572 (52%), Gaps = 20/572 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A++LFD M  R  +T+  +I+  G+     +A+ LY ++    +      F
Sbjct: 144 YGKFGEVIEARRLFDGMSRRVALTWARMITAYGQNGFGNEAIELYKQI---DVVPDKVIF 200

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +SVL  CS+A    EG +IH R++   F ++  + + L+DLY   G    A  +F  + E
Sbjct: 201 ASVLDACSSAMNLEEGKRIHARIVEGKFEIDTVVNNTLLDLYGMCGCLEEAKAVFHSMQE 260

Query: 174 --RNLATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSI----GML 226
             R++ +WN ++RA     +P E L ++ +M+ A G   + +S+   +  CS     G++
Sbjct: 261 QGRDVVSWNSIIRAHLHNDQPKEALGLFFEMQEACGPRQDRVSYVSALDACSAMGSDGLV 320

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
              GK LH  +I    + ++++V  ALV  Y  CG ++EAK+ FD +P  + ++W S++ 
Sbjct: 321 --HGKTLHG-LILANRIHIDVYVGTALVTMYGRCGDVVEAKQVFDVMPSKNAVTWTSMIR 377

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y+      +A+E+F +M+    R     +V  +  +    +V    +IH  +++LG+  
Sbjct: 378 GYSTNGFAREAVEVFQKMEQEGCRADKIVYVAVMEASRGVEDVKMAAKIHSRLSELGWCS 437

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFES--APGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
            S  +QS+L  M+GKC  +E++  VF++     R     N+++ +    G+ +  +E+F 
Sbjct: 438 DSA-IQSSLIAMHGKCGSVEAARRVFDAMEEKSRGSPAWNAMIAAYSRRGDKEAVLELFQ 496

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M    +  D  T    L  L+V  S +      +    + +G E++  V  +L++  +R
Sbjct: 497 AMQAASVRPDRATF---LGLLAVGGSFSPSEASAVQHAILSTGMETDSLVGTALLNTLTR 553

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            G +  + +VF+++   +VV +TS+M  Y+ +G   EA+D+ + M  +G+ PD+V FL V
Sbjct: 554 SGKVGEARRVFDRLDKRDVVSWTSMMVAYASHGSSLEAIDLFQEMQLQGMEPDEVAFLAV 613

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  CNH+G  + G   F SM+  Y ++A   HY C++D+LGRAG L  AE+L+   P   
Sbjct: 614 LFACNHAGFFRRGWDYFASMRGDYDLEAGADHYCCVVDLLGRAGRLADAEDLIVSMPFKP 673

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           D   WS+L+ +C  HG+     R++   ME E
Sbjct: 674 DEATWSALVGACNTHGDVERAARISRA-MEAE 704



 Score =  213 bits (542), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 156/568 (27%), Positives = 282/568 (49%), Gaps = 23/568 (4%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I+ + K      A+ +FD M  RD V++N +I+   +    ++A+ ++ EM   GI 
Sbjct: 33  NALINMYSKCSSPADARNVFDGMTVRDSVSWNTMIATYARNGFGEEAVEVFHEMALVGIP 92

Query: 108 ESASTFSSVLS-----VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               T  S L       C + G   +G +IH R+ S+GF  ++ + + L+ +Y + G  +
Sbjct: 93  PDKYTLISALDGCCGLSCPDRGL-KKGREIHRRIQSIGFMSDVALQTGLIKMYGKFGEVI 151

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFD +  R   TW  M+ A+ +    +E + +Y ++    V P+ + F  ++  CS
Sbjct: 152 EARRLFDGMSRRVALTWARMITAYGQNGFGNEAIELYKQID---VVPDKVIFASVLDACS 208

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVIS 280
             M L+EGK++H+ +++ G  +++  V N L+D Y  CG L EAK  F  +     DV+S
Sbjct: 209 SAMNLEEGKRIHARIVE-GKFEIDTVVNNTLLDLYGMCGCLEEAKAVFHSMQEQGRDVVS 267

Query: 281 WNSIVSIYADYDLIFDALELFFRMQ-LCRKRPSIRSFVEFLNFASRTGN--VYFGKQIHG 337
           WNSI+  +   D   +AL LFF MQ  C  R    S+V  L+  S  G+  +  GK +HG
Sbjct: 268 WNSIIRAHLHNDQPKEALGLFFEMQEACGPRQDRVSYVSALDACSAMGSDGLVHGKTLHG 327

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +      H  V+V +AL  MYG+C  +  +  VF+  P ++     S++     +G  +
Sbjct: 328 LILANRI-HIDVYVGTALVTMYGRCGDVVEAKQVFDVMPSKNAVTWTSMIRGYSTNGFAR 386

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +AVE+F  M  EG   D++     ++A        + +   +H    + G+ S+ A+  S
Sbjct: 387 EAVEVFQKMEQEGCRADKIVYVAVMEASRGVEDVKMAA--KIHSRLSELGWCSDSAIQSS 444

Query: 458 LMDAYSRCGHIELSHQVFEKI--PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
           L+  + +CG +E + +VF+ +   S     + +++  YSR G     L++ + M    + 
Sbjct: 445 LIAMHGKCGSVEAARRVFDAMEEKSRGSPAWNAMIAAYSRRGDKEAVLELFQAMQAASVR 504

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD+ TFL +LA    S    E   V +++ S  G++ D    + +++ L R+G + +A  
Sbjct: 505 PDRATFLGLLA-VGGSFSPSEASAVQHAILST-GMETDSLVGTALLNTLTRSGKVGEARR 562

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           +  +     D + W+S++ +   HG+ +
Sbjct: 563 VFDRLD-KRDVVSWTSMMVAYASHGSSL 589



 Score =  192 bits (487), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 131/502 (26%), Positives = 247/502 (49%), Gaps = 30/502 (5%)

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L  C +    ++G  +H  V   GFG +L +G+ L+++Y +      A ++FD +  R+ 
Sbjct: 1   LDACVSLKALSDGRDVHASVTRHGFGSDLVLGNALINMYSKCSSPADARNVFDGMTVRDS 60

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML-----LDEGK 231
            +WN M+  +      +E + ++++M   G+ P+  +    + GC  G+      L +G+
Sbjct: 61  VSWNTMIATYARNGFGEEAVEVFHEMALVGIPPDKYTLISALDGC-CGLSCPDRGLKKGR 119

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           ++H  +  +G++  ++ +   L+  Y   G +IEA++ FD +     ++W  +++ Y   
Sbjct: 120 EIHRRIQSIGFMS-DVALQTGLIKMYGKFGEVIEARRLFDGMSRRVALTWARMITAYGQN 178

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
               +A+EL+ ++ +    P    F   L+  S   N+  GK+IH  + +  F+  +V V
Sbjct: 179 GFGNEAIELYKQIDVV---PDKVIFASVLDACSSAMNLEEGKRIHARIVEGKFEIDTV-V 234

Query: 352 QSALTDMYGKCNVIESSVAVFES--APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            + L D+YG C  +E + AVF S    GR +   NS++ + LH+   K+A+ +F F + E
Sbjct: 235 NNTLLDLYGMCGCLEEAKAVFHSMQEQGRDVVSWNSIIRAHLHNDQPKEALGLF-FEMQE 293

Query: 410 GIG--LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             G   D V+  + L A S   S  L   + LH   + +    ++ V  +L+  Y RCG 
Sbjct: 294 ACGPRQDRVSYVSALDACSAMGSDGLVHGKTLHGLILANRIHIDVYVGTALVTMYGRCGD 353

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           +  + QVF+ +PS N V +TS++ GYS NG  REA+++ + M Q G   DK+ ++ V+  
Sbjct: 354 VVEAKQVFDVMPSKNAVTWTSMIRGYSTNGFAREAVEVFQKMEQEGCRADKIVYVAVMEA 413

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG-------ILDKAEELLQQT 580
                 VK    + + + S  G  +D    S +I M G+ G       + D  EE  + +
Sbjct: 414 SRGVEDVKMAAKIHSRL-SELGWCSDSAIQSSLIAMHGKCGSVEAARRVFDAMEEKSRGS 472

Query: 581 PGGGDCMMWSSLLRSCRVHGNE 602
           P       W++++ +    G++
Sbjct: 473 PA------WNAMIAAYSRRGDK 488



 Score =  115 bits (289), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 178/394 (45%), Gaps = 19/394 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            +++Y     +  + + G +  AK++FD MP+++ VT+  +I G       ++A+ ++ +
Sbjct: 335 HIDVYVGTALVTMYGRCGDVVEAKQVFDVMPSKNAVTWTSMIRGYSTNGFAREAVEVFQK 394

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G +     + +V+             +IH R+  LG+  +  I S L+ ++ + G 
Sbjct: 395 MEQEGCRADKIVYVAVMEASRGVEDVKMAAKIHSRLSELGWCSDSAIQSSLIAMHGKCGS 454

Query: 161 SVRALDLFDELPERNLAT--WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
              A  +FD + E++  +  WN M+ A+      + VL ++  M+A  V P+  +F  ++
Sbjct: 455 VEAARRVFDAMEEKSRGSPAWNAMIAAYSRRGDKEAVLELFQAMQAASVRPDRATFLGLL 514

Query: 219 RGCSIGMLL--DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
              ++G      E   +   ++  G ++ +  V  AL++  +  G + EA++ FD +   
Sbjct: 515 ---AVGGSFSPSEASAVQHAILSTG-METDSLVGTALLNTLTRSGKVGEARRVFDRLDKR 570

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL---NFAS--RTGNVYF 331
           DV+SW S++  YA +    +A++LF  MQL    P   +F+  L   N A   R G  YF
Sbjct: 571 DVVSWTSMMVAYASHGSSLEAIDLFQEMQLQGMEPDEVAFLAVLFACNHAGFFRRGWDYF 630

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
                 Y  + G DH        + D+ G+   +  +  +  S P +  E   S +    
Sbjct: 631 ASMRGDYDLEAGADH-----YCCVVDLLGRAGRLADAEDLIVSMPFKPDEATWSALVGAC 685

Query: 392 HS-GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++ G+++ A  +   M  E      V+L  T  A
Sbjct: 686 NTHGDVERAARISRAMEAEERAATHVSLCNTFVA 719



 Score = 65.9 bits (159), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 64/254 (25%), Positives = 116/254 (45%), Gaps = 47/254 (18%)

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
           +LKALS          R +H    + GF S++ +  +L++ YS+C     +  VF+ +  
Sbjct: 6   SLKALS--------DGRDVHASVTRHGFGSDLVLGNALINMYSKCSSPADARNVFDGMTV 57

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM------V 534
            + V + +++  Y+RNG G EA+++   M   G+ PDK T +  L GC   G+      +
Sbjct: 58  RDSVSWNTMIATYARNGFGEEAVEVFHEMALVGIPPDKYTLISALDGC--CGLSCPDRGL 115

Query: 535 KEGQLVFNSMKSV---------------YG-----IDADRQH----------YSCMIDML 564
           K+G+ +   ++S+               YG     I+A R            ++ MI   
Sbjct: 116 KKGREIHRRIQSIGFMSDVALQTGLIKMYGKFGEVIEARRLFDGMSRRVALTWARMITAY 175

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV-ANILMELEPVDFAVY 623
           G+ G  ++A EL +Q     D ++++S+L +C    N   G+R+ A I+     +D  V 
Sbjct: 176 GQNGFGNEAIELYKQIDVVPDKVIFASVLDACSSAMNLEEGKRIHARIVEGKFEIDTVVN 235

Query: 624 SQVSNFYSEIGEFE 637
           + + + Y   G  E
Sbjct: 236 NTLLDLYGMCGCLE 249



 Score = 63.2 bits (152), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 50/220 (22%), Positives = 93/220 (42%), Gaps = 8/220 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           M +  + P   T   L     S  P  +S +  +      + +       ++   +SG +
Sbjct: 498 MQAASVRPDRATFLGLLAVGGSFSPSEASAVQHAILSTGMETDSLVGTALLNTLTRSGKV 557

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
             A+++FD +  RD+V++  ++          +A+ L+ EM   G++     F +VL  C
Sbjct: 558 GEARRVFDRLDKRDVVSWTSMMVAYASHGSSLEAIDLFQEMQLQGMEPDEVAFLAVLFAC 617

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSP----LVDLYMRMGPSVRALDLFDELP-ERN 175
           ++AGF+  G        S+    +L  G+     +VDL  R G    A DL   +P + +
Sbjct: 618 NHAGFFRRGWDYFA---SMRGDYDLEAGADHYCCVVDLLGRAGRLADAEDLIVSMPFKPD 674

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            ATW+ ++ A       +   R+   M+AE      +S C
Sbjct: 675 EATWSALVGACNTHGDVERAARISRAMEAEERAATHVSLC 714


>gi|125525985|gb|EAY74099.1| hypothetical protein OsI_01984 [Oryza sativa Indica Group]
          Length = 735

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 184/632 (29%), Positives = 326/632 (51%), Gaps = 19/632 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALY 96
           N  +N YSS       +    L +A  +FD++P  ARD+ ++N L++   + R P  AL 
Sbjct: 51  NSLINFYSS-------LPRPLLAAAFAVFDDIPPAARDVASWNSLLNPLSRHR-PLDALS 102

Query: 97  LYDEMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDL 154
            +  M+S   +  S  +F++  +  + A     G   H     +   + N+Y+ + L+++
Sbjct: 103 RFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNM 162

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLS 213
           Y ++G    A  +FD +P+RN  +W+ M+  +      +E   ++  M  E   E +   
Sbjct: 163 YCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFV 222

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++   S+ + L  G+Q+H  ++K G +D  + V N+LV  Y+  G +  A   F+  
Sbjct: 223 ATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDF-VSVENSLVTMYAKAGCMGAAFHVFESS 281

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              + I+W+++++ YA       A+ +F +M      P+  +FV  LN +S  G +  GK
Sbjct: 282 RERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGK 341

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           Q HG + KLGF+   ++V+SAL DMY KC  I  +   F+      +    ++++  + +
Sbjct: 342 QAHGLMVKLGFE-VQIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQN 400

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G  ++A+ ++  M  EGI   + T+++ L+A +  A+   G  + LH   +K G      
Sbjct: 401 GEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPG--KQLHTQIVKYGLGLGAP 458

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V  +L   YS+CG++E    VF +IP  +V+ + SI++G+S+NG G  ALD+ E M   G
Sbjct: 459 VGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEG 518

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
            IPD +TF+ +L  C+H G+V  G   F+ M   YG+     HY+CM+D+L RAG+L +A
Sbjct: 519 TIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEA 578

Query: 574 EELLQQ-TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           ++ ++  T   G C +W  +L +CR   +  +G      LMEL   D + Y  +SN Y+ 
Sbjct: 579 KDFIESITIDHGTC-LWRIVLGACRSLRDFDVGAYAGERLMELGTRDSSAYILLSNIYAS 637

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             ++    ++R     R + +D G S +E+NS
Sbjct: 638 QRKWNDVERVRHLMRLRGVNKDPGCSWVELNS 669



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 216/460 (46%), Gaps = 4/460 (0%)

Query: 38  PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL 97
           P+   N+Y     ++ + K G ++ A+++FD MP R+  +++ +++G    +  ++A  L
Sbjct: 147 PSAVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDL 206

Query: 98  YDEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           +  M+     E +    ++VLS  S       G Q+H  ++  G    + + + LV +Y 
Sbjct: 207 FRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYA 266

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A  +F+   ERN  TW+ M+  + +    D  + M+++M A G  P   +F  
Sbjct: 267 KAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVG 326

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++   S    L  GKQ H  ++KLG+ +V I+V +ALVD Y+ CG + +AK+ FD +   
Sbjct: 327 VLNASSDLGALAVGKQAHGLMVKLGF-EVQIYVKSALVDMYAKCGCIADAKEGFDQLYEV 385

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D++ W ++VS +       +AL L+ RM      PS  +    L   +    +  GKQ+H
Sbjct: 386 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 445

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             + K G   G+  V SAL+ MY KC  +E  ++VF   P R +   NS+++    +G  
Sbjct: 446 TQIVKYGLGLGAP-VGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCG 504

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
             A+++F  M  EG   D +T    L A S     + G            G    +    
Sbjct: 505 NGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRG-WEYFSLMTKDYGLTPRLDHYA 563

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
            ++D  SR G ++ +    E I   +  C   I+ G  R+
Sbjct: 564 CMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRS 603



 Score =  100 bits (248), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 172/370 (46%), Gaps = 12/370 (3%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGS--LIEAKKSFDFIP--VDDVISWNSIV 285
           G+ LH+  +K G    +  VAN+L++FYS+     L  A   FD IP    DV SWNS++
Sbjct: 31  GEALHAWALKSG-AASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVASWNSLL 89

Query: 286 SIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  + +  + DAL  F  M       PS  SF      A+R  +   G   H    K+  
Sbjct: 90  NPLSRHRPL-DALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPS 148

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              +V+V ++L +MY K  ++  +  +F+  P R+    ++++         ++A ++F 
Sbjct: 149 AVSNVYVCTSLLNMYCKLGIVSDARRMFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFR 208

Query: 405 FMVDEGIG-LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
            M++E      E   +  L A+SV     +G    +H   +K G    ++V  SL+  Y+
Sbjct: 209 LMLEECPSEKSEFVATAVLSAVSVPLGLLMG--EQMHGLIVKDGLLDFVSVENSLVTMYA 266

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           + G +  +  VFE     N + +++++ GY++NG    A+ M   M   G  P + TF+ 
Sbjct: 267 KAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVG 326

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL   +  G +  G+     M  + G +      S ++DM  + G +  A+E   Q    
Sbjct: 327 VLNASSDLGALAVGKQAHGLMVKL-GFEVQIYVKSALVDMYAKCGCIADAKEGFDQLY-E 384

Query: 584 GDCMMWSSLL 593
            D ++W++++
Sbjct: 385 VDIVLWTAMV 394


>gi|325260825|gb|ADZ04643.1| hypothetical protein [Oryza punctata]
          Length = 674

 Score =  266 bits (679), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 173/631 (27%), Positives = 317/631 (50%), Gaps = 70/631 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N  S N  +  ++++    +A  LF +MPA++ V+Y  +ISG  K    ++A  +Y+
Sbjct: 96  PRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREAELVYE 155

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG---------SP 150
           EM                 V SNA      +  + RV  L   L ++ G         S 
Sbjct: 156 EMPQQWRDP----------VGSNAL-----MAGYLRVGELAMALRVFEGMTVRDVISWSA 200

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           +VD   + G    A  +FD +PER++ +W  M+R + +     + L ++  M+ EGV+ N
Sbjct: 201 MVDGLCKHGSVSEARRVFDAMPERSVVSWTSMIRGYVKRGMCSDGLLLFLNMRREGVQVN 260

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +   ++  C+   L  EG Q+H+ +I +G+ +++IF+ ++++  YS  G + +A+++F
Sbjct: 261 ATTLSVVLDACAGASLAREGIQIHNLIISMGF-ELDIFLGDSVIIMYSRFGWMADAQRAF 319

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           + +   D++SWNS+++ Y  +D++ +A  LF   +L  ++ ++      + FA+R     
Sbjct: 320 NCMQQKDIVSWNSLITGYVQHDMVEEAHVLF---KLMPQKDAVSWTSMVVGFANR----- 371

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
                 G+                          +  SV +FE  P + +    ++++S 
Sbjct: 372 ------GW--------------------------MRESVELFEQMPVKDVVAWTAIISSF 399

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           + +G+   AV  F  M  EG   + +T S  L AL+  A  N G  R  H  +I  G+  
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTITFSCLLSALASLAMLNQG--RQAHAYSINMGWVF 457

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           + AV  SL+  Y++CG +  +H VF  I +P+++   S++  + ++G   +AL +   M 
Sbjct: 458 DSAVHTSLISMYAKCGRLAEAHHVFSSISNPSLIAINSMITAFVQHGFAEDALKLFTKMQ 517

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  P+ VTFL +L GC  +G V++G   F SM+ VYG++ + +HY+CM+D+LGRAG+L
Sbjct: 518 NAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +A E++   P       W++LL +  +H N    +  A  L+E +P D   Y+ +S  +
Sbjct: 578 AEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSKMF 637

Query: 631 SEIG-EFEVSMQIRETALARKLTRDIGHSLI 660
           S  G E+E   ++ +  L+   ++  G+SLI
Sbjct: 638 SSAGMEYEEMQKVVQ--LSNMASKRPGYSLI 666



 Score = 71.6 bits (174), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 91/379 (24%), Positives = 158/379 (41%), Gaps = 68/379 (17%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+  Y   G L +A+  FD +P  DVISW ++++ YAD   +  A  +F  M   R  
Sbjct: 42  NALLTAYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPR-RNA 100

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS--ALTDMYGKCNVIESS 368
           PS  + +          +VY           L +   + +  S  A+     K  ++  +
Sbjct: 101 PSWNALL----------SVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAGMLREA 150

Query: 369 VAVFESAP--GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
             V+E  P   R     N+LM   L  G +  A+ +F     EG+ + +V          
Sbjct: 151 ELVYEEMPQQWRDPVGSNALMAGYLRVGELAMALRVF-----EGMTVRDV---------- 195

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           +S SA                          ++D   + G +  + +VF+ +P  +VV +
Sbjct: 196 ISWSA--------------------------MVDGLCKHGSVSEARRVFDAMPERSVVSW 229

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           TS++ GY + GM  + L +   M + G+  +  T   VL  C  + + +EG  + N + S
Sbjct: 230 TSMIRGYVKRGMCSDGLLLFLNMRREGVQVNATTLSVVLDACAGASLAREGIQIHNLIIS 289

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEEL---LQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           + G + D      +I M  R G +  A+     +QQ     D + W+SL+     H  ++
Sbjct: 290 M-GFELDIFLGDSVIIMYSRFGWMADAQRAFNCMQQK----DIVSWNSLITGYVQH--DM 342

Query: 604 IGRRVANILMELEPVDFAV 622
           +    A++L +L P   AV
Sbjct: 343 VEE--AHVLFKLMPQKDAV 359


>gi|297723179|ref|NP_001173953.1| Os04g0436350 [Oryza sativa Japonica Group]
 gi|21740490|emb|CAD40814.1| OSJNBa0006B20.5 [Oryza sativa Japonica Group]
 gi|125590470|gb|EAZ30820.1| hypothetical protein OsJ_14890 [Oryza sativa Japonica Group]
 gi|218194889|gb|EEC77316.1| hypothetical protein OsI_15981 [Oryza sativa Indica Group]
 gi|255675491|dbj|BAH92681.1| Os04g0436350 [Oryza sativa Japonica Group]
          Length = 685

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 172/554 (31%), Positives = 282/554 (50%), Gaps = 36/554 (6%)

Query: 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           N +  + L+    R+G +  AL LF  +P+ +  ++N ++ A  +  R  + LR    M 
Sbjct: 80  NTFSYNALLSACARLGRADDALALFGAIPDPDQCSYNAVVAALAQHGRGGDALRFLAAMH 139

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
           A+    N  SF   +  C+       G+Q+H+ V K      ++++  ALVD Y+ C   
Sbjct: 140 ADDFVLNAYSFASALSACASEKASRTGEQVHALVTKSSH-GSDVYIGTALVDMYAKCERP 198

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
            EA+K FD +P  +++SWNS+++ Y     + +AL LF RM      P   +    ++  
Sbjct: 199 EEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEALALFVRMMKDGFVPDEVTLASVMSAC 258

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +       G+Q+H  + K       + + +AL DMY KC     +  VF+    RS+   
Sbjct: 259 AGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGRTWEAKCVFDRMAIRSVVSE 318

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST---------------TLKALSV- 427
            S++T    S N+ DA  +F  MV++ +    V ++T                LK  SV 
Sbjct: 319 TSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHNSEEEEALRLFVRLKRESVW 378

Query: 428 ----------SASANLGSCRL---LHCCAIKSGF------ESNIAVSCSLMDAYSRCGHI 468
                     +A ANL + +L    H   +K GF      ES++ V  SL+D Y + G I
Sbjct: 379 PTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPESDVFVGNSLVDMYLKTGSI 438

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
               +VFE++ + + V + +++ GY++NG  ++AL + E M+     PD VT + VL+ C
Sbjct: 439 SDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERMLCSNERPDSVTMIGVLSAC 498

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
            HSG+VKEG+  F SM   +GI   R HY+CMID+LGRAG L + EEL++  P   D ++
Sbjct: 499 GHSGLVKEGRRYFQSMTEDHGIIPTRDHYTCMIDLLGRAGHLKEVEELIENMPMEPDAVL 558

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W+SLL +CR+H N  +G   A  L EL+P +   Y  +SN Y+E+G++    ++R +   
Sbjct: 559 WASLLGACRLHKNIDMGEWAAGKLFELDPDNSGPYVLLSNMYAELGKWADVFRVRRSMKH 618

Query: 649 RKLTRDIGHSLIEV 662
           R +++  G S IE+
Sbjct: 619 RGVSKQPGCSWIEI 632



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 131/511 (25%), Positives = 221/511 (43%), Gaps = 69/511 (13%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE------- 100
           N  +  + + G L+ A+++FD MP R+  +YN L+S C +      AL L+         
Sbjct: 54  NTLLSAYARLGSLHDARRVFDGMPHRNTFSYNALLSACARLGRADDALALFGAIPDPDQC 113

Query: 101 --------MVSHG----------------IKESASTFSSVLSVCSNAGFYTEGIQIHCRV 136
                   +  HG                   +A +F+S LS C++      G Q+H  V
Sbjct: 114 SYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGEQVHALV 173

Query: 137 LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
                G ++YIG+ LVD+Y +      A  +FD +PERN+ +WN ++  + +    DE L
Sbjct: 174 TKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGPVDEAL 233

Query: 197 RMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256
            ++ +M  +G  P+ ++   ++  C+      EG+Q+H+ ++K      ++ + NALVD 
Sbjct: 234 ALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDM 293

Query: 257 YSACGSLIEAKKSFDFIPV-------------------------------DDVISWNSIV 285
           Y+ CG   EAK  FD + +                                +V++WN ++
Sbjct: 294 YAKCGRTWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLI 353

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG-- 343
           + YA      +AL LF R++     P+  ++   LN  +   N+  G+Q H +V K G  
Sbjct: 354 ATYAHNSEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFR 413

Query: 344 FDHG---SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           FD G    V V ++L DMY K   I     VFE    R     N+++     +G  KDA+
Sbjct: 414 FDSGPESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDAL 473

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F  M+      D VT+   L A   S     G  R         G          ++D
Sbjct: 474 LLFERMLCSNERPDSVTMIGVLSACGHSGLVKEGR-RYFQSMTEDHGIIPTRDHYTCMID 532

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
              R GH++   ++ E +P  P+ V + S++
Sbjct: 533 LLGRAGHLKEVEELIENMPMEPDAVLWASLL 563



 Score =  149 bits (376), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 110/413 (26%), Positives = 193/413 (46%), Gaps = 48/413 (11%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP-KQALYLYDEM 101
           ++Y     +D + K      A+K+FD MP R++V++N LI+ C +   P  +AL L+  M
Sbjct: 181 DVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLIT-CYEQNGPVDEALALFVRM 239

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR-VLSLGFGLNLYIGSPLVDLYMRMGP 160
           +  G      T +SV+S C+      EG Q+H R V S  F  ++ + + LVD+Y + G 
Sbjct: 240 MKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNNALVDMYAKCGR 299

Query: 161 SVRALDLFD-------------------------------ELPERNLATWNLMLRAFCEL 189
           +  A  +FD                               ++ E+N+  WN+++  +   
Sbjct: 300 TWEAKCVFDRMAIRSVVSETSMITGYAKSANVGDAQAVFLQMVEKNVVAWNVLIATYAHN 359

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW-----VD 244
           S  +E LR++ ++K E V P   ++  ++  C+    L  G+Q H HV+K G+      +
Sbjct: 360 SEEEEALRLFVRLKRESVWPTHYTYGNVLNACANLANLQLGQQAHVHVLKEGFRFDSGPE 419

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
            ++FV N+LVD Y   GS+ +  K F+ +   D +SWN+++  YA      DAL LF RM
Sbjct: 420 SDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFERM 479

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT---DMYGK 361
               +RP   + +  L+    +G V  G++   Y   +  DHG +  +   T   D+ G+
Sbjct: 480 LCSNERPDSVTMIGVLSACGHSGLVKEGRR---YFQSMTEDHGIIPTRDHYTCMIDLLGR 536

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
              ++    + E+ P   +E    L  SLL +  +   ++M  +   +   LD
Sbjct: 537 AGHLKEVEELIENMP---MEPDAVLWASLLGACRLHKNIDMGEWAAGKLFELD 586



 Score = 87.8 bits (216), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 57/250 (22%), Positives = 116/250 (46%), Gaps = 7/250 (2%)

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L+  +R G+++  +++       G  H +    +AL     +    + ++A+F + P  
Sbjct: 56  LLSAYARLGSLHDARRVFD-----GMPHRNTFSYNALLSACARLGRADDALALFGAIPDP 110

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
                N+++ +L   G   DA+     M  +   L+  + ++ L A +   ++  G    
Sbjct: 111 DQCSYNAVVAALAQHGRGGDALRFLAAMHADDFVLNAYSFASALSACASEKASRTGE--Q 168

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +H    KS   S++ +  +L+D Y++C   E + +VF+ +P  N+V + S++  Y +NG 
Sbjct: 169 VHALVTKSSHGSDVYIGTALVDMYAKCERPEEAQKVFDAMPERNIVSWNSLITCYEQNGP 228

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
             EAL +   M++ G +PD+VT   V++ C      +EG+ V   M        D    +
Sbjct: 229 VDEALALFVRMMKDGFVPDEVTLASVMSACAGLAAGREGRQVHTRMVKSDRFREDMVLNN 288

Query: 559 CMIDMLGRAG 568
            ++DM  + G
Sbjct: 289 ALVDMYAKCG 298



 Score = 62.0 bits (149), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 42/157 (26%), Positives = 81/157 (51%), Gaps = 9/157 (5%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ +++  N  +D ++K+G ++   K+F+ M ARD V++N +I G  +    K AL L++
Sbjct: 418 PESDVFVGNSLVDMYLKTGSISDGAKVFERMAARDNVSWNAMIVGYAQNGRAKDALLLFE 477

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL----NLYIGSPLVDLY 155
            M+    +  + T   VLS C ++G   EG + + + ++   G+    + Y  + ++DL 
Sbjct: 478 RMLCSNERPDSVTMIGVLSACGHSGLVKEG-RRYFQSMTEDHGIIPTRDHY--TCMIDLL 534

Query: 156 MRMGPSVRALDLFDELP-ERNLATWNLMLRAFCELSR 191
            R G      +L + +P E +   W  +L A C L +
Sbjct: 535 GRAGHLKEVEELIENMPMEPDAVLWASLLGA-CRLHK 570


>gi|297843412|ref|XP_002889587.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335429|gb|EFH65846.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 558

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 159/554 (28%), Positives = 295/554 (53%), Gaps = 13/554 (2%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-- 172
           ++LS+ S         Q+H +V+  GF   + +GS L + Y++      A   FD +P  
Sbjct: 9   ALLSILSQTKTLHHTQQVHAKVIIHGFQDEVVLGSSLTNAYIQSNRLDFATASFDRIPCW 68

Query: 173 ERNLATWNLMLRAFCELSR--PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +RN  +WN +L  + +       +VL +YN+M+      +  +  + ++ C    LL+ G
Sbjct: 69  KRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHCDGVDSFNLVFAIKACVGLGLLENG 128

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
             +H   +K G +D + +VA +LV+ Y+  G++  A+K FD +PV + + W  ++  Y  
Sbjct: 129 MLIHGLAMKNG-LDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVLWGVLMKGYLK 187

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ---IHGYVTKLGFDHG 347
           Y    +   LF+ M   R        +  +      GNV  GK+   +HG   +  F   
Sbjct: 188 YSKDSEVFRLFYLM---RDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSIRRSFIDQ 244

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           S ++++++ DMY KC +++++  +FE++  R++    +L++         +A+++F  M+
Sbjct: 245 SGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAIDLFRQML 304

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
            E I  +  TL+  L  +S S+  +L   + +H   I++G E +     S +D Y+RCG+
Sbjct: 305 GESILPNHCTLAAIL--VSCSSLGSLRHGKSVHGYMIRNGIEMDAVNFTSFIDTYARCGN 362

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           I+++ +VF+ +P  NV+ ++S++N +  NG+  EALD  + M  + L+P+ VTF+ +L+ 
Sbjct: 363 IQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTFVSLLSA 422

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+HSG VKEG   F SM   YG+  + +HY+CM+D+LGRAG + +A+  +   P      
Sbjct: 423 CSHSGNVKEGWKQFESMTRDYGLVPEEEHYACMVDLLGRAGEIGEAKSFIDNMPVKPMAS 482

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
            W +LL +CR+H    +   +A  L+ +EP + +VY  +SN Y++ G +E+   +R    
Sbjct: 483 AWGALLSACRIHKEVDLAGEIAEKLLSMEPDESSVYVLLSNIYADAGMWEMVNCVRHKMG 542

Query: 648 ARKLTRDIGHSLIE 661
            +   + +G S  E
Sbjct: 543 IKGYRKPMGLSATE 556



 Score =  151 bits (382), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 194/387 (50%), Gaps = 9/387 (2%)

Query: 54  FVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFR--HPKQALYLYDEMVSHGIKES 109
           +++S  L+ A   FD +P   R+  ++N ++SG  K +  +    L LY+ M  H   + 
Sbjct: 49  YIQSNRLDFATASFDRIPCWKRNRHSWNTILSGYSKSKSCYYSDVLLLYNRMRRHC--DG 106

Query: 110 ASTFSSVLSV--CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
             +F+ V ++  C   G    G+ IH   +  G   + Y+   LV++Y + G    A  +
Sbjct: 107 VDSFNLVFAIKACVGLGLLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKV 166

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FDE+P RN   W ++++ + + S+  EV R++  M+  G+  + L+   +V+ C      
Sbjct: 167 FDEMPVRNSVLWGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAG 226

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            EGK +H   I+  ++D + ++  +++D Y  C  L  A+K F+     +V+ W +++S 
Sbjct: 227 KEGKCVHGLSIRRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISG 286

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           +A  +   +A++LF +M      P+  +    L   S  G++  GK +HGY+ + G +  
Sbjct: 287 FAKCERAVEAIDLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNGIEMD 346

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V+  S   D Y +C  I+ +  VF+  P R++   +S++ +   +G  ++A++ F  M 
Sbjct: 347 AVNFTS-FIDTYARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMK 405

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLG 434
            + +  + VT  + L A S S +   G
Sbjct: 406 SQNLVPNSVTFVSLLSACSHSGNVKEG 432



 Score =  140 bits (352), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 105/436 (24%), Positives = 206/436 (47%), Gaps = 14/436 (3%)

Query: 19  TCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVT 77
            C  +  L + +L+      N    + Y +   ++ + + G + SA+K+FDEMP R+ V 
Sbjct: 118 ACVGLGLLENGMLIHGLAMKNGLDKDDYVAPSLVEMYAQFGTMESAQKVFDEMPVRNSVL 177

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           + +L+ G  K+    +   L+  M   G+   A T   ++  C N     EG  +H   +
Sbjct: 178 WGVLMKGYLKYSKDSEVFRLFYLMRDTGLALDALTLICLVKACGNVSAGKEGKCVHGLSI 237

Query: 138 SLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
              F   + Y+ + ++D+Y++      A  LF+   ERN+  W  ++  F +  R  E +
Sbjct: 238 RRSFIDQSGYLEASIIDMYVKCRLLDNARKLFETSVERNVVMWTTLISGFAKCERAVEAI 297

Query: 197 RMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256
            ++ +M  E + PN  +   ++  CS    L  GK +H ++I+ G ++++     + +D 
Sbjct: 298 DLFRQMLGESILPNHCTLAAILVSCSSLGSLRHGKSVHGYMIRNG-IEMDAVNFTSFIDT 356

Query: 257 YSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF 316
           Y+ CG++  A+K FD +P  +VISW+S+++ +    L  +AL+ F  M+     P+  +F
Sbjct: 357 YARCGNIQMARKVFDMMPKRNVISWSSMINAFGINGLFEEALDCFDNMKSQNLVPNSVTF 416

Query: 317 VEFLNFASRTGNVYFG-KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
           V  L+  S +GNV  G KQ        G      H  + + D+ G+   I  + +  ++ 
Sbjct: 417 VSLLSACSHSGNVKEGWKQFESMTRDYGLVPEEEHY-ACMVDLLGRAGEIGEAKSFIDNM 475

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL--DEVTLSTTLKALSVSASANL 433
           P + +    S   +LL +  I   V++ G + ++ + +  DE ++   L  +     A+ 
Sbjct: 476 PVKPMA---SAWGALLSACRIHKEVDLAGEIAEKLLSMEPDESSVYVLLSNI----YADA 528

Query: 434 GSCRLLHCCAIKSGFE 449
           G   +++C   K G +
Sbjct: 529 GMWEMVNCVRHKMGIK 544


>gi|449464596|ref|XP_004150015.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449529868|ref|XP_004171920.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 734

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 166/567 (29%), Positives = 293/567 (51%), Gaps = 37/567 (6%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYM--RMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           QIH  ++  G    L+  S L++     R G    A+ LF+ + E NL  WN M+R    
Sbjct: 47  QIHAHIIKTGLHNTLFALSKLIEFSAVSRSGDISYAISLFNSIEEPNLFIWNSMIRGLSM 106

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
              P   L  + +M   GVEPN  +F ++++ C+      EGKQ+H+HV+KLG+V  ++F
Sbjct: 107 SLSPALALVFFVRMIYSGVEPNSYTFPFLLKSCAKLASAHEGKQIHAHVLKLGFVS-DVF 165

Query: 249 VANALVDFYSACGSL-------------------------------IEAKKSFDFIPVDD 277
           +  +L++ Y+  G +                                 A++ FD +PV D
Sbjct: 166 IHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMPVKD 225

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V+SWN++++ YA      +AL LF  M+     P+  + V  L+  +++  +  G  +  
Sbjct: 226 VVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNSMRS 285

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
           ++   G    ++ + +AL DMY KC  ++++  +F+    R +   N ++    H  + K
Sbjct: 286 WIEDRGL-CSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCSYK 344

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +A+ +F  M+  G+   E+T  + L + +   + +LG  + +H    K+    + ++S S
Sbjct: 345 EALALFREMLASGVEPTEITFLSILPSCAHLGAIDLG--KWIHAYINKNFNSVSTSLSTS 402

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++CG+I  + QVF+ +   ++  + +++ G + +G   +A ++   M   G+ P+
Sbjct: 403 LIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEPN 462

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
           ++TF+ +L+ C H+G+V  GQ  F+SM   Y I    QHY CMID+LGRAG+ ++AE LL
Sbjct: 463 EITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLFEEAESLL 522

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
           Q      D  +W SLL +CR HG   +G  VA  L ELEP +   Y  +SN Y+  G+++
Sbjct: 523 QNMEVKPDGAIWGSLLGACRDHGRVELGELVAERLFELEPDNPGAYVLLSNIYAGAGKWD 582

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
              +IR     R + +  G + IEV++
Sbjct: 583 DVARIRTRLNDRGMKKVPGCTTIEVDN 609



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 136/521 (26%), Positives = 226/521 (43%), Gaps = 78/521 (14%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           +SG ++ A  LF+ +   ++  +N +I G      P  AL  +  M+  G++ ++ TF  
Sbjct: 75  RSGDISYAISLFNSIEEPNLFIWNSMIRGLSMSLSPALALVFFVRMIYSGVEPNSYTFPF 134

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV------------- 162
           +L  C+      EG QIH  VL LGF  +++I + L+++Y + G                
Sbjct: 135 LLKSCAKLASAHEGKQIHAHVLKLGFVSDVFIHTSLINMYAQSGEMNNAQLVFDQSNFRD 194

Query: 163 ------------------RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204
                             RA  LFDE+P +++ +WN M+  + ++ R  E L ++  M+ 
Sbjct: 195 AISFTALIAGYALWGYMDRARQLFDEMPVKDVVSWNAMIAGYAQMGRSKEALLLFEDMRK 254

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
             V PN  +   ++  C+    LD G  + S +   G    N+ + NAL+D YS CG L 
Sbjct: 255 ANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCS-NLKLVNALIDMYSKCGDLQ 313

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
            A++ FD +   DVISWN ++  Y       +AL LF  M      P+  +F+  L   +
Sbjct: 314 TARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPSCA 373

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
             G +  GK IH Y+ K  F+  S  + ++L D+Y KC  I ++  VF+    +SL   N
Sbjct: 374 HLGAIDLGKWIHAYINK-NFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASWN 432

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           +++  L   G    A E+F  M  +GI  +E+T    L A           C+       
Sbjct: 433 AMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSA-----------CK------- 474

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-----SPNVVCFTSIMNGYSRNGMG 499
                                G ++L  Q F  +      SP    +  +++   R G+ 
Sbjct: 475 -------------------HAGLVDLGQQFFSSMVQDYKISPKSQHYGCMIDLLGRAGLF 515

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            EA  +L+ M  +   PD   +  +L  C   G V+ G+LV
Sbjct: 516 EEAESLLQNMEVK---PDGAIWGSLLGACRDHGRVELGELV 553



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 180/364 (49%), Gaps = 34/364 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSA-------------------------------KKLFDEMP 71
           +++     I+ + +SG +N+A                               ++LFDEMP
Sbjct: 163 DVFIHTSLINMYAQSGEMNNAQLVFDQSNFRDAISFTALIAGYALWGYMDRARQLFDEMP 222

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            +D+V++N +I+G  +    K+AL L+++M    +  + ST  SVLS C+ +     G  
Sbjct: 223 VKDVVSWNAMIAGYAQMGRSKEALLLFEDMRKANVPPNESTIVSVLSACAQSNALDLGNS 282

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           +   +   G   NL + + L+D+Y + G    A +LFD++ ER++ +WN+M+  +  +  
Sbjct: 283 MRSWIEDRGLCSNLKLVNALIDMYSKCGDLQTARELFDDMLERDVISWNVMIGGYTHMCS 342

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
             E L ++ +M A GVEP  ++F  ++  C+    +D GK +H+++ K  +  V+  ++ 
Sbjct: 343 YKEALALFREMLASGVEPTEITFLSILPSCAHLGAIDLGKWIHAYINK-NFNSVSTSLST 401

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           +L+D Y+ CG+++ A++ FD + +  + SWN+++   A +     A ELF +M      P
Sbjct: 402 SLIDLYAKCGNIVAARQVFDGMKIKSLASWNAMICGLAMHGQADKAFELFSKMSSDGIEP 461

Query: 312 SIRSFVEFLNFASRTGNVYFGKQ-IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           +  +FV  L+     G V  G+Q     V        S H    + D+ G+  + E + +
Sbjct: 462 NEITFVGILSACKHAGLVDLGQQFFSSMVQDYKISPKSQHY-GCMIDLLGRAGLFEEAES 520

Query: 371 VFES 374
           + ++
Sbjct: 521 LLQN 524



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 68/240 (28%), Positives = 126/240 (52%), Gaps = 1/240 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGH 59
           M    + P   TI ++   C     L     + S+ +      N+   N  ID + K G 
Sbjct: 252 MRKANVPPNESTIVSVLSACAQSNALDLGNSMRSWIEDRGLCSNLKLVNALIDMYSKCGD 311

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L +A++LFD+M  RD++++N++I G       K+AL L+ EM++ G++ +  TF S+L  
Sbjct: 312 LQTARELFDDMLERDVISWNVMIGGYTHMCSYKEALALFREMLASGVEPTEITFLSILPS 371

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++ G    G  IH  +      ++  + + L+DLY + G  V A  +FD +  ++LA+W
Sbjct: 372 CAHLGAIDLGKWIHAYINKNFNSVSTSLSTSLIDLYAKCGNIVAARQVFDGMKIKSLASW 431

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+       + D+   +++KM ++G+EPN ++F  ++  C    L+D G+Q  S +++
Sbjct: 432 NAMICGLAMHGQADKAFELFSKMSSDGIEPNEITFVGILSACKHAGLVDLGQQFFSSMVQ 491


>gi|242051555|ref|XP_002454923.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
 gi|241926898|gb|EES00043.1| hypothetical protein SORBIDRAFT_03g001460 [Sorghum bicolor]
          Length = 741

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 187/660 (28%), Positives = 331/660 (50%), Gaps = 34/660 (5%)

Query: 15  TLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-- 72
            L     S  P+S+SL+   YC P   L                 L +A  +F ++PA  
Sbjct: 40  ALKSGAASHTPVSNSLI-TFYCSPPRPL-----------------LGAAFAVFADIPAGL 81

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVS--HGIKESASTFSSVLSVCSNAGFYTEGI 130
           RD+ ++N L++   +   P  AL  +  M+S    +  +  +F++V +  +     + G 
Sbjct: 82  RDVASWNSLLNPLSR-HQPLAALSHFRSMMSSTDAVLPTPHSFAAVFTAAARVPSASAGA 140

Query: 131 QIH---CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
             H   C++ S     N+++ + L+++Y ++G    A  +FD++P RN  +W  M+  + 
Sbjct: 141 VAHAFACKLPSSSGSNNVFVSTALLNMYCKLGAISDARRVFDQMPHRNAVSWAAMVSGYA 200

Query: 188 ELSRPDEVLRMYNKMKAE-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                +E   ++  M  E  +E N      ++   S+ + L  G QLH  V+K G V   
Sbjct: 201 TGKCSEEAFELFRLMLQECPLEKNEFVATAVLSAVSVPLGLLIGVQLHGLVLKDGLVGF- 259

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + V N+LV  Y+    +  A   F      + I+W+++++ YA       A  +F +M  
Sbjct: 260 VSVENSLVTMYAKAECMDAAMAVFGSSKERNSITWSAMITGYAQNGEADCAATMFLQMHS 319

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
               P+  +FV  LN +S  G +  GKQ HG + KLGF+   V+V+SAL DMY KC    
Sbjct: 320 AGFSPTEFTFVGILNASSDMGALVVGKQAHGLMVKLGFER-QVYVKSALVDMYAKCGCTG 378

Query: 367 SSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
            +   F        +    +++T  + +G  ++A+ ++  M  EG+    +T+++ L+A 
Sbjct: 379 DAKDGFHQLYDVDDVVIWTAMITGHVQNGEHEEALMLYSRMDKEGVMPSYLTVTSVLRAC 438

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
           +  A+   G  + LH   +K GF    +V  +L   YS+CG++E S  VF ++P  +++ 
Sbjct: 439 ACLAALEPG--KQLHAQILKCGFGLGGSVGTALSTMYSKCGNLEDSMVVFRRMPDRDIIS 496

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + SI++G+S++G GR+ALD+ E M   G+ PD +TF+ VL  C+H G+V  G   F +M 
Sbjct: 497 WNSIISGFSQHGRGRDALDLFEEMKLEGIAPDHITFINVLCACSHMGLVDRGWFYFRAMS 556

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ-TPGGGDCMMWSSLLRSCRVHGNEII 604
             YG+     HY+C++D+L RAG L +A++ ++  T   G C +W  +L +CR   +  +
Sbjct: 557 KDYGLIPKLDHYACIVDILSRAGQLKEAKDFIESITIDHGTC-LWRIVLGACRSLRDFDV 615

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           G      LMEL   D + Y  +SN Y+   ++    ++R     R +++D G S +E+N+
Sbjct: 616 GAYAGEQLMELGTEDSSAYILLSNIYAAQRKWNDVERVRHLMRLRGVSKDPGCSWVELNN 675


>gi|356519676|ref|XP_003528496.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Glycine max]
          Length = 728

 Score =  266 bits (679), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 188/667 (28%), Positives = 330/667 (49%), Gaps = 67/667 (10%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+ S+N +I    K G L  A+ LFD+MP R + ++N +ISG        +AL L   M 
Sbjct: 40  NVISTNISIAQRFKMGKLEEARHLFDQMPNRTVSSWNTMISGYSLLGRYPEALTLVSFMH 99

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +  +  +FS+VLS C+ +G +  G Q+H  +L  G+     +GS L+   +      
Sbjct: 100 RSCVALNEVSFSAVLSACARSGSFLLGKQVHSLLLKSGYERFGLVGSALLYFCVHCCGIR 159

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-----------------KAE 205
            A  +F+EL + N   W+LML  + +    D+ + M+ KM                 + +
Sbjct: 160 EAEVVFEELRDGNQVLWSLMLAGYVKQDMMDDAMDMFEKMPVRDVVAWTTLISGYAKRED 219

Query: 206 GVE----------------PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           G E                PN  +   +VR C+   +L  GK +H   IK G +D +  +
Sbjct: 220 GCERALDLFGCMRRSSEVLPNEFTLDCVVRVCARLGVLRAGKVVHGLCIK-GGLDFDNSI 278

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVSIYADYDLIFDALELFFRMQLCR 308
             A+ +FY  C ++ +AK+ ++ +     ++  NS++        I +A  +F+ ++   
Sbjct: 279 GGAVTEFYCGCEAIDDAKRVYESMGGQASLNVANSLIGGLVSKGRIEEAELVFYELR--- 335

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYV-------TKLGFDHGSVHVQSALTDM--- 358
                            T  V +   I GY        +K  F+  S    ++L  M   
Sbjct: 336 ----------------ETNPVSYNLMIKGYAMSGQFEKSKRLFEKMSPENLTSLNTMISV 379

Query: 359 YGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           Y K   ++ +V +F+   G R+    NS+M+  + +G  K+A+ ++  M    +     T
Sbjct: 380 YSKNGELDEAVKLFDKTKGERNYVSWNSMMSGYIINGKYKEALNLYVAMRRLSVDYSRST 439

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
            S   +A S   S   G  +LLH   IK+ F+ N+ V  +L+D YS+CGH+  + + F  
Sbjct: 440 FSVLFRACSCLCSFRQG--QLLHAHLIKTPFQVNVYVGTALVDFYSKCGHLAEAQRSFIS 497

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
           I SPNV  +T+++NGY+ +G+G EA+ +   M+ +G++P+  TF+ VL+ CNH+G+V EG
Sbjct: 498 IFSPNVAAWTALINGYAYHGLGSEAILLFRSMLHQGIVPNAATFVGVLSACNHAGLVCEG 557

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
             +F+SM+  YG+    +HY+C++D+LGR+G L +AEE + + P   D ++W +LL +  
Sbjct: 558 LRIFHSMQRCYGVTPTIEHYTCVVDLLGRSGHLKEAEEFIIKMPIEADGIIWGALLNASW 617

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
              +  +G R A  L  L+P     +  +SN Y+ +G +    ++R+   + +L +D G 
Sbjct: 618 FWKDMEVGERAAEKLFSLDPNPIFAFVVLSNMYAILGRWGQKTKLRKRLQSLELRKDPGC 677

Query: 658 SLIEVNS 664
           S IE+N+
Sbjct: 678 SWIELNN 684


>gi|212274935|ref|NP_001130299.1| uncharacterized protein LOC100191393 [Zea mays]
 gi|194688780|gb|ACF78474.1| unknown [Zea mays]
 gi|414586171|tpg|DAA36742.1| TPA: hypothetical protein ZEAMMB73_518704 [Zea mays]
          Length = 695

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 158/562 (28%), Positives = 293/562 (52%), Gaps = 8/562 (1%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E     + +L   + +     G+Q+H  +  +GFG +  +G+ L+D+Y++ G    A ++
Sbjct: 2   ERQKMIAGLLRASARSSSLRGGVQLHGAITKMGFGSDTMLGNNLIDMYVKCGELDLACEV 61

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGML 226
           F  + +RN+ +W  ++  F         LR+  +M+ A    PN  +    ++ C +   
Sbjct: 62  FGGMRDRNVVSWTALMVGFLRHGDATGCLRLLGEMRTASEAAPNEYTLSASLKACCVVGD 121

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD-VISWNSIV 285
              G  +H   ++ G+ + ++ VA++LV  YS  G + +A++ FD   +   + +WN++V
Sbjct: 122 TAAGVGIHGLCVRAGYQEHDV-VASSLVLVYSKGGRIGDARRVFDGAGLGSGIATWNAMV 180

Query: 286 SIYADYDLIFDALELF--FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           S YA      DAL +F   R    + +P   +F   L   S  G    G Q+H  +T  G
Sbjct: 181 SGYAHAGHGRDALLVFREMRRHEGQHQPDEFTFASLLKACSGLGATREGAQVHAAMTASG 240

Query: 344 FDHGSVHV-QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           F   S  +   AL DMY KC  +  ++ VFE    +++    +++      G + +A+E+
Sbjct: 241 FSTASNAILAGALVDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALEL 300

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F      G   D   LS+ +  L+  A    G  R +HC  IK    ++++   S++D Y
Sbjct: 301 FRRFWRSGARPDSHVLSSVVGVLADFALVEQG--RQVHCYGIKDPTGTDVSAGNSIVDMY 358

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG  + + ++F ++ +PNVV +T+++NG  ++G+GREA+ + E M   G+ PD+VT+L
Sbjct: 359 LKCGLPDEAERMFREMRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYL 418

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L+ C+H+G+V E +  F+ ++    +    +HY+CM+D+LGRAG L +A +L++  P 
Sbjct: 419 ALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPM 478

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                +W +LL +CRVH +  +GR   ++L+ ++  +   Y  +SN  +E GE+    ++
Sbjct: 479 EPTVGVWQTLLSACRVHKDVAVGREAGDVLLAMDGDNPVNYVTLSNVLAEAGEWRECHKV 538

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R+    R L +  G S +EV  
Sbjct: 539 RDAMRRRGLKKQGGCSWVEVGK 560



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 81/341 (23%), Positives = 157/341 (46%), Gaps = 17/341 (4%)

Query: 5   KLLPRVRTITTLAP----------TCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDD 53
           +LL  +RT +  AP           C  +   ++ + +   C +   Q +   ++  +  
Sbjct: 91  RLLGEMRTASEAAPNEYTLSASLKACCVVGDTAAGVGIHGLCVRAGYQEHDVVASSLVLV 150

Query: 54  FVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS- 111
           + K G +  A+++FD       + T+N ++SG     H + AL ++ EM  H  +     
Sbjct: 151 YSKGGRIGDARRVFDGAGLGSGIATWNAMVSGYAHAGHGRDALLVFREMRRHEGQHQPDE 210

Query: 112 -TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLF 168
            TF+S+L  CS  G   EG Q+H  + + GF    N  +   LVD+Y++      A+ +F
Sbjct: 211 FTFASLLKACSGLGATREGAQVHAAMTASGFSTASNAILAGALVDMYVKCRRLPVAMQVF 270

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           + L  +N+  W  ++    +  +  E L ++ +    G  P+      +V   +   L++
Sbjct: 271 ERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDSHVLSSVVGVLADFALVE 330

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           +G+Q+H + IK      ++   N++VD Y  CG   EA++ F  +   +V+SW ++V+  
Sbjct: 331 QGRQVHCYGIKDP-TGTDVSAGNSIVDMYLKCGLPDEAERMFREMRAPNVVSWTTMVNGL 389

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
             + L  +A+ LF  M+     P   +++  L+  S  G V
Sbjct: 390 GKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLV 430



 Score = 94.4 bits (233), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 54/237 (22%), Positives = 116/237 (48%), Gaps = 1/237 (0%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D +VK   L  A ++F+ +  ++++ +  ++ G  +     +AL L+      G +  +
Sbjct: 254 VDMYVKCRRLPVAMQVFERLERKNVIQWTAVVVGHAQEGQVTEALELFRRFWRSGARPDS 313

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
              SSV+ V ++     +G Q+HC  +    G ++  G+ +VD+Y++ G    A  +F E
Sbjct: 314 HVLSSVVGVLADFALVEQGRQVHCYGIKDPTGTDVSAGNSIVDMYLKCGLPDEAERMFRE 373

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +   N+ +W  M+    +     E + ++ +M+A GVEP+ +++  ++  CS   L+DE 
Sbjct: 374 MRAPNVVSWTTMVNGLGKHGLGREAVALFEEMRAGGVEPDEVTYLALLSACSHAGLVDEC 433

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVS 286
           ++  S + +   V         +VD     G L EA+     +P++  +  W +++S
Sbjct: 434 RRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLS 490


>gi|414585599|tpg|DAA36170.1| TPA: hypothetical protein ZEAMMB73_453858 [Zea mays]
          Length = 829

 Score =  265 bits (678), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 175/643 (27%), Positives = 330/643 (51%), Gaps = 20/643 (3%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           L D+    N  LN+Y+S      +   G ++  ++LFD MP R+ V++N L     K   
Sbjct: 169 LPDTAVLRNSLLNVYAS---CVRYRGDGSVDVVRRLFDAMPKRNAVSWNTLFGWYVKTGR 225

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNA----GFYTEGIQIHCRVLSLGFGLNLY 146
           P++AL ++  M+  GIK +  +F +V    +       F   G+ +      + +  +L+
Sbjct: 226 PQEALEMFVRMLEDGIKPTPVSFVNVFPAVAKEDPSWSFVLYGLLVKH---GMEYVNDLF 282

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MKAE 205
           + S  + ++  +G    A  +F+   ++N   WN M+  + +  +  E + +  + M ++
Sbjct: 283 VVSSAIVMFSELGDVQSAWRVFEYAAKKNTEVWNTMITGYVQNGKFAEAMGLVIRLMVSK 342

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
            V  + ++F   +   S       G+QLH ++IK     + + + NALV  YS CG++  
Sbjct: 343 EVPLDVVTFLSALTAASQSQDGRLGQQLHGYLIKGMHTTLPVILGNALVVMYSRCGNVQT 402

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A + FD +   D++SWN++++ +   D   + L L ++MQ       + +    L+ AS 
Sbjct: 403 AFELFDRLHEKDIVSWNTMITAFVQNDFDLEGLLLVYQMQKSGFAADLVTLTAVLSAASN 462

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE--SAPGRSLECC 383
           TG+++ GKQ H Y+ + G +   +  +S L DMY K   IE +  VF+      R     
Sbjct: 463 TGDLHIGKQAHSYLIRHGIEGEGL--ESYLIDMYAKSGRIEIAQRVFDDYGNAKRDEVTW 520

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N+++     +G+ + A+  F  M++  +    VTL++ L A        L + + +HC A
Sbjct: 521 NAMIAGYTQTGHPEQAILAFRAMIEACLEPTSVTLASVLPACD-PLGGGLCAGKQIHCFA 579

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           ++   ++N+ V  +L+D YS+CG I  +  VF  +   + V +T++++G  ++G G+ AL
Sbjct: 580 LRRCLDTNVFVGTALVDMYSKCGEISTAEHVFADMTEKSTVSYTTMISGLGQHGFGKSAL 639

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
            +   M ++GL PD VTFL  ++ CN+SG+V EG  ++ SM++ +G+    QH  C++DM
Sbjct: 640 SLFYSMQEKGLKPDGVTFLAAISACNYSGLVDEGLALYRSMET-FGVVVTPQHRCCIVDM 698

Query: 564 LGRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFA 621
           L +AG +++A E +Q+    GD + +W +LL SC+    + +   V   L+ +E     A
Sbjct: 699 LAKAGRVEEAYEFVQELGEEGDFVSIWGTLLASCKAQDKQELVNLVTERLICIEKKYGHA 758

Query: 622 VYSQ-VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            YS  +S+ ++  G +  +  +R+    R L++  G S I+V 
Sbjct: 759 GYSVLLSHIFAAEGNWSSADSLRKEMRLRGLSKMAGSSWIKVQ 801


>gi|325260820|gb|ADZ04639.1| hypothetical protein [Oryza glaberrima]
          Length = 674

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 173/630 (27%), Positives = 313/630 (49%), Gaps = 68/630 (10%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N  S N  +  ++++    +A  LF +MPA++ V+Y  +ISG  K     +A  +Y+
Sbjct: 96  PRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYE 155

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG---------SP 150
           EM           +     V SNA      +  + RV  L   L ++ G         S 
Sbjct: 156 EM----------PWQWRDPVGSNAL-----MAGYLRVGELAMALRVFEGMTVRDVISWSA 200

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           +VD   + G    A  +FD +PERN+ +W  M+R + +     + L ++  M+ EGV+ N
Sbjct: 201 MVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVN 260

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +    +  C++  L  EG Q+H+ +I +G+ +++IF+ ++++  YS  G +++AK++F
Sbjct: 261 TTTLSVALDACAVASLAREGIQIHNLIISMGF-ELDIFLGDSIIIMYSRFGWMVDAKRAF 319

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +   D++SWNS+++ Y  +D++ +A  LF   +L  ++ ++      + FA+R     
Sbjct: 320 DCMQQKDIVSWNSLITGYVQHDMVEEAHVLF---KLMHQKDAVSWTSMVVGFANR----- 371

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
                 G+                          +  SV +FE  P +      ++++S 
Sbjct: 372 ------GW--------------------------MRESVELFEQMPVKDEVAWTAIISSF 399

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           + +G+   AV  F  M  EG   + +  S  L AL+  A  N G  R  H  +I  G+  
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQG--RQAHAYSINMGWVF 457

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           + AV  SL+  Y++CG +  ++ VF  I +P+++   S++  + ++G   +AL +   M 
Sbjct: 458 DSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQ 517

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  P+ VTFL +L GC  +G V++G   F SM+ VYG++ + +HY+CM+D+LGRAG+L
Sbjct: 518 NAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +A E++   P       W++LL +  +H N    +  A  L+E +P D   Y+ +S  +
Sbjct: 578 AEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSRMF 637

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           S  G  E    ++   L+   ++  G+SLI
Sbjct: 638 SSAG-MEDEEMLKVVQLSNLASKRPGYSLI 666



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 149/352 (42%), Gaps = 67/352 (19%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+  Y   G L +A+  FD +P  DVISW ++++ YAD   +  A  +F  M   R  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPR-RNA 100

Query: 311 PSIRSFVE--------------FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV----- 351
           PS  + +               F    ++   V +G  I G + K    H +  V     
Sbjct: 101 PSWNALLSVYLRAARPRAAHALFYKMPAKNA-VSYGAIISG-LAKAEMLHEAELVYEEMP 158

Query: 352 --------QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                    +AL   Y +   +  ++ VFE    R +   ++++  L   G++ +A  +F
Sbjct: 159 WQWRDPVGSNALMAGYLRVGELAMALRVFEGMTVRDVISWSAMVDGLCKHGSVSEARRVF 218

Query: 404 GFMVD-------------------------------EGIGLDEVTLSTTLKALSVSASAN 432
             M +                               EG+ ++  TLS  L A +V++ A 
Sbjct: 219 DAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAVASLAR 278

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492
            G    +H   I  GFE +I +  S++  YSR G +  + + F+ +   ++V + S++ G
Sbjct: 279 EGIQ--IHNLIISMGFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQKDIVSWNSLITG 336

Query: 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           Y ++ M  EA  + ++M Q+    D V++  ++ G  + G ++E   +F  M
Sbjct: 337 YVQHDMVEEAHVLFKLMHQK----DAVSWTSMVVGFANRGWMRESVELFEQM 384


>gi|359491499|ref|XP_003634283.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Vitis vinifera]
          Length = 766

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 178/633 (28%), Positives = 317/633 (50%), Gaps = 70/633 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ +  S N  I   + +     A++LF++MP RD+V++N++ISGC ++R+ + A  L+D
Sbjct: 76  PRRSSISWNAMISGCLSNDKFYLARQLFEKMPTRDLVSWNVMISGCVRYRNLRAARLLFD 135

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH----CRVLSLGFGLNLYIGSPLVDLY 155
           +M    +     +++++LS  +  G+  E  +I     C+        N    + ++  Y
Sbjct: 136 QMPERDV----VSWNAMLSGYAQNGYVKEAKEIFDEMPCK--------NSISWNGMLAAY 183

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           ++ G    A  LF+   +  L +WN M+  + + +R  +   ++++M     E + +S+ 
Sbjct: 184 VQNGRIEDARRLFESKADWELISWNCMMGGYVKRNRLVDARGIFDRMP----ERDEVSWN 239

Query: 216 YMVRG-CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
            M+ G    G LL+  +      ++      ++F   A+V  Y   G L EA++ FD +P
Sbjct: 240 TMISGYAQNGELLEAQRLFEESPVR------DVFTWTAMVSGYVQNGMLDEARRVFDGMP 293

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             + +SWN+I++ Y     +  A ELF  M  C+   S  + +        TG       
Sbjct: 294 EKNSVSWNAIIAGYVQCKRMDQARELFEAMP-CQNVSSWNTMI--------TG------- 337

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
                                   Y +   I  +   F+  P R      +++     SG
Sbjct: 338 ------------------------YAQNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSG 373

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             ++A+ +F  M  +G  L+  T ++TL   +  A+  LG  + +H   +K+G ES   V
Sbjct: 374 YGEEALHLFVEMKRDGERLNRSTFTSTLSTCAEIAALELG--KQVHGRVVKAGLESGCYV 431

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             +L+  Y +CG+I+ ++ VFE I    VV + +++ GY+R+G G+EAL + E M + G+
Sbjct: 432 GNALLVMYCKCGNIDDAYIVFEGIEEKEVVSWNTMIAGYARHGFGKEALMLFESMKKTGI 491

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           +PD VT + VL+ C+H+G+V +G   F SM   YGI A+ +HY+CMID+LGRAG LD A+
Sbjct: 492 LPDDVTMVGVLSACSHTGLVDKGTEYFYSMTQDYGITANSKHYTCMIDLLGRAGRLDDAQ 551

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
            L++  P   D   W +LL + R+HGN  +G + A ++ E+EP +  +Y  +SN Y+  G
Sbjct: 552 NLMKNMPFEPDAATWGALLGASRIHGNTELGEKAAKMIFEMEPDNSGMYVLLSNLYAASG 611

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
            +    ++R     R + +  G+S +EV N  H
Sbjct: 612 RWGDVGRMRLRMRDRGVKKVPGYSWVEVQNKIH 644



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 79/341 (23%), Positives = 161/341 (47%), Gaps = 42/341 (12%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           + +P  ++++    +  +V++G L+ A+++FD MP ++ V++N +I+G  + +   QA  
Sbjct: 259 EESPVRDVFTWTAMVSGYVQNGMLDEARRVFDGMPEKNSVSWNAIIAGYVQCKRMDQARE 318

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L++ M                  C N   +                      + ++  Y 
Sbjct: 319 LFEAM-----------------PCQNVSSW----------------------NTMITGYA 339

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G   +A + FD +P+R+  +W  ++  + +    +E L ++ +MK +G   N  +F  
Sbjct: 340 QNGDIAQARNFFDRMPQRDSISWAAIIAGYAQSGYGEEALHLFVEMKRDGERLNRSTFTS 399

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
            +  C+    L+ GKQ+H  V+K G ++   +V NAL+  Y  CG++ +A   F+ I   
Sbjct: 400 TLSTCAEIAALELGKQVHGRVVKAG-LESGCYVGNALLVMYCKCGNIDDAYIVFEGIEEK 458

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +V+SWN++++ YA +    +AL LF  M+     P   + V  L+  S TG V  G +  
Sbjct: 459 EVVSWNTMIAGYARHGFGKEALMLFESMKKTGILPDDVTMVGVLSACSHTGLVDKGTEYF 518

Query: 337 GYVTK-LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
             +T+  G    S H  + + D+ G+   ++ +  + ++ P
Sbjct: 519 YSMTQDYGITANSKHY-TCMIDLLGRAGRLDDAQNLMKNMP 558


>gi|224120114|ref|XP_002318245.1| predicted protein [Populus trichocarpa]
 gi|222858918|gb|EEE96465.1| predicted protein [Populus trichocarpa]
          Length = 513

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 151/487 (31%), Positives = 268/487 (55%), Gaps = 8/487 (1%)

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           +N ++  +    RP     +Y ++  +G  P+  +F  +++ C+  + + EG+Q+H  +I
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K+G+V  NI+V N+LV FYS C    +A + FD + V DV+SW  ++S Y    L  +A+
Sbjct: 62  KMGFV-CNIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAV 120

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358
            LF RM +    P+  +FV  L    R G +  GK IHG   K  F  G + V +AL DM
Sbjct: 121 GLFLRMDV---EPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVG-LEVSNALMDM 176

Query: 359 YGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418
           Y KC  +  +  VF+    + +    S+++ L+     K+A+E+F  M   GI  D + L
Sbjct: 177 YVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIIL 236

Query: 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           ++ L A +   + + G  R +H    +   + +I +  +++D Y++CG IE+S Q+F  +
Sbjct: 237 TSVLSACARLGALDYG--RWVHEHIDRKAIKWDIQIGTAMVDMYAKCGCIEMSMQIFNGM 294

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
           P  NV+ + +++NG + +G   + L++ E M++ G+ P++VTFL +L  C H G+V EG+
Sbjct: 295 PHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGR 354

Query: 539 LVFNSMK-SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
             FN MK   Y +    +HY CM+D+L RA +LD+A EL +  P   D  +  +LL +C+
Sbjct: 355 QYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACK 414

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
            +GN  + + + +  +EL+  D  VY  +SN ++    ++   +IR     + + +  G 
Sbjct: 415 ENGNTELPQEILDRFVELDSHDSGVYVLLSNIHAINQRWDDVTRIRRLMKEKGIKKPPGS 474

Query: 658 SLIEVNS 664
           ++IE++ 
Sbjct: 475 TVIELDG 481



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 119/434 (27%), Positives = 203/434 (46%), Gaps = 15/434 (3%)

Query: 78  YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
           +N L+SG      PK A  +Y  +V  G      TF +VL  C+      EG Q+H  ++
Sbjct: 2   FNALVSGYAIGDRPKTAFLVYRRIVKDGFLPDMFTFPAVLKSCAKFVGIGEGRQVHGVII 61

Query: 138 SLGFGLNLYIGSPLVDLY---MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
            +GF  N+Y+ + LV  Y    R G + R   +FDE+  R++ +W  ++  +      DE
Sbjct: 62  KMGFVCNIYVENSLVHFYSVCKRFGDASR---VFDEMLVRDVVSWTGVISGYVRAGLFDE 118

Query: 195 VLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
            + ++ +M    VEPN  +F  ++  C     L  GK +H    K  +  V + V+NAL+
Sbjct: 119 AVGLFLRMD---VEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAF-GVGLEVSNALM 174

Query: 255 DFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR 314
           D Y  CG L  AK+ FD +   D++SW SI+S     +   +ALELF  MQ     P   
Sbjct: 175 DMYVKCGCLPGAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGI 234

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
                L+  +R G + +G+ +H ++ +       + + +A+ DMY KC  IE S+ +F  
Sbjct: 235 ILTSVLSACARLGALDYGRWVHEHIDRKAIKW-DIQIGTAMVDMYAKCGCIEMSMQIFNG 293

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
            P +++   N+L+  L   G+    +E+F  MV  G+  +EVT    L A       N G
Sbjct: 294 MPHKNVLTWNALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEG 353

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGY 493
                     +      +     ++D   R   ++ + ++ + +P SP+V    ++++  
Sbjct: 354 RQYFNWMKGQQYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSAC 413

Query: 494 SRNG---MGREALD 504
             NG   + +E LD
Sbjct: 414 KENGNTELPQEILD 427



 Score =  146 bits (369), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 90/368 (24%), Positives = 186/368 (50%), Gaps = 6/368 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NIY  N  +  +        A ++FDEM  RD+V++  +ISG  +     +A+ L+  M 
Sbjct: 68  NIYVENSLVHFYSVCKRFGDASRVFDEMLVRDVVSWTGVISGYVRAGLFDEAVGLFLRM- 126

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++ +A+TF SVL  C   G+ + G  IH       FG+ L + + L+D+Y++ G   
Sbjct: 127 --DVEPNAATFVSVLVACGRKGYLSVGKGIHGLSFKSAFGVGLEVSNALMDMYVKCGCLP 184

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FDEL E+++ +W  ++    + + P E L ++  M++ G+EP+G+    ++  C+
Sbjct: 185 GAKQVFDELAEKDIVSWTSIISGLVQCNCPKEALELFQDMQSSGIEPDGIILTSVLSACA 244

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               LD G+ +H H+ +   +  +I +  A+VD Y+ CG +  + + F+ +P  +V++WN
Sbjct: 245 RLGALDYGRWVHEHIDRKA-IKWDIQIGTAMVDMYAKCGCIEMSMQIFNGMPHKNVLTWN 303

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++  A +   +  LELF  M     RP+  +F+  L      G V  G+Q   ++   
Sbjct: 304 ALLNGLAMHGHAYKVLELFEEMVRVGMRPNEVTFLAILTACCHCGLVNEGRQYFNWMKGQ 363

Query: 343 GFD-HGSVHVQSALTDMYGKCNVIESSVAVFESAP-GRSLECCNSLMTSLLHSGNIKDAV 400
            ++    +     + D+  +  +++ ++ + ++ P    +    +L+++   +GN +   
Sbjct: 364 QYNLPPRLEHYGCMVDLLCRARLLDEALELTKAMPMSPDVRIMGALLSACKENGNTELPQ 423

Query: 401 EMFGFMVD 408
           E+    V+
Sbjct: 424 EILDRFVE 431


>gi|225445812|ref|XP_002275298.1| PREDICTED: pentatricopeptide repeat-containing protein At4g30700
           [Vitis vinifera]
          Length = 781

 Score =  265 bits (678), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 174/608 (28%), Positives = 312/608 (51%), Gaps = 7/608 (1%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A  LF  +P  D+  YN+LI        P  A+ LY  +      E    F+    +
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEP-DNFTYAFVI 116

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
              +      +     +++ GFG +L++GS +V  Y +      A  +FD + ER+   W
Sbjct: 117 SGASSLGLGLLLHAHSIVA-GFGSDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTVLW 175

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+    + S  DE + ++  M   G+  +  +   ++ G +    L  G  +    +K
Sbjct: 176 NTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLAMK 235

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           +G+   + +V   L   YS CG +  A+  F  I   D++S+N+++S Y   +    ++ 
Sbjct: 236 VGF-HSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESSVR 294

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  + +  ++ +  S V  +      G+++  + IHG+ TK G    S  V +ALT +Y
Sbjct: 295 LFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSS-VSTALTTVY 353

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            + N IES+  +F+ +  +SL   N++++    +G  + A+ +F  M    +  + VT++
Sbjct: 354 SRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNPVTVT 413

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + L A +   + +LG  + +H    +  FESNI VS +L+D Y++CG I  + ++F  +P
Sbjct: 414 SILSACAQLGALSLG--KWVHDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFSMMP 471

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             N V + ++++GY  +G G EAL++   M+   + P  VTFL VL  C+H+G+V+EG  
Sbjct: 472 EKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSPTGVTFLSVLYACSHAGLVREGDE 531

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +F SM   +G +   +HY+CM+D+LGRAG LDKA + +++ P      +W +LL +C +H
Sbjct: 532 IFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALDFIRKMPVEPGPPVWGALLGACMIH 591

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            +  + R  ++ L EL+P +   Y  +SN YS    +  +  +R     RKL +  G +L
Sbjct: 592 KDANLARLASDKLFELDPQNVGYYVLLSNIYSAGQNYPEAASVRGVVKRRKLAKTPGCTL 651

Query: 660 IEV-NSCH 666
           IEV N+ H
Sbjct: 652 IEVANTLH 659



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 106/426 (24%), Positives = 195/426 (45%), Gaps = 3/426 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K   + +A+K+FD M  RD V +N ++SG  K     +A+ ++ +MV  GI   ++T 
Sbjct: 151 YFKFSRVAAARKVFDGMLERDTVLWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTV 210

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           ++VL   +       G+ I C  + +GF  + Y+ + L  LY + G    A  LF ++ +
Sbjct: 211 AAVLPGVAELQDLALGMGIQCLAMKVGFHSHAYVITGLACLYSKCGEIETARLLFGQIGQ 270

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            +L ++N M+  +   +  +  +R++ ++   G + N  S   ++        L   + +
Sbjct: 271 PDLVSYNAMISGYTCNNETESSVRLFKELLVSGEKVNSSSIVGLIPVFFPFGHLHLTRCI 330

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H    K G V  N  V+ AL   YS    +  A+  FD      + SWN+++S YA   L
Sbjct: 331 HGFCTKSG-VVSNSSVSTALTTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGL 389

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
              A+ LF  MQ C  RP+  +    L+  ++ G +  GK +H  + +  F+  ++ V +
Sbjct: 390 TEKAISLFQEMQKCEVRPNPVTVTSILSACAQLGALSLGKWVHDLINRESFE-SNIFVST 448

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL DMY KC  I  +  +F   P ++    N++++     G   +A+ +F  M+   +  
Sbjct: 449 ALIDMYAKCGSITEAQRLFSMMPEKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVSP 508

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
             VT  + L A S +     G   +        GFE        ++D   R G+++ +  
Sbjct: 509 TGVTFLSVLYACSHAGLVREGD-EIFRSMVHDHGFEPLPEHYACMVDLLGRAGNLDKALD 567

Query: 474 VFEKIP 479
              K+P
Sbjct: 568 FIRKMP 573



 Score =  105 bits (263), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 116/520 (22%), Positives = 239/520 (45%), Gaps = 24/520 (4%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+  GI   AST +  L++ +      +  Q H +++  G   +L   + L      +  
Sbjct: 1   MLYRGI---ASTRNLFLTLINRVSTLHQLNQTHAQIILNGLHNDLVTVTKLTHKLSHLKA 57

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVR 219
             +A  LF  +P  +L  +N+++RAF   + P   + +Y  + K+  +EP+  ++ +++ 
Sbjct: 58  IDQASLLFSTIPNPDLFLYNVLIRAFSLNNSPSSAVSLYTHLRKSTPLEPDNFTYAFVIS 117

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +  + L      HS V   G    ++FV +A+V  Y     +  A+K FD +   D +
Sbjct: 118 -GASSLGLGLLLHAHSIVAGFG---SDLFVGSAIVACYFKFSRVAAARKVFDGMLERDTV 173

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
            WN++VS         +A+ +F  M          +    L   +   ++  G  I    
Sbjct: 174 LWNTMVSGLVKNSCFDEAILIFGDMVKGGIGFDSTTVAAVLPGVAELQDLALGMGIQCLA 233

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K+GF H   +V + L  +Y KC  IE++  +F       L   N++++    +   + +
Sbjct: 234 MKVGF-HSHAYVITGLACLYSKCGEIETARLLFGQIGQPDLVSYNAMISGYTCNNETESS 292

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSAS-ANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           V +F  ++  G   ++V  S+ +  + V     +L   R +H    KSG  SN +VS +L
Sbjct: 293 VRLFKELLVSG---EKVNSSSIVGLIPVFFPFGHLHLTRCIHGFCTKSGVVSNSSVSTAL 349

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
              YSR   IE +  +F++    ++  + ++++GY++NG+  +A+ + + M +  + P+ 
Sbjct: 350 TTVYSRLNEIESARLLFDESSEKSLASWNAMISGYAQNGLTEKAISLFQEMQKCEVRPNP 409

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VT   +L+ C   G +  G+ V + + +    +++    + +IDM  + G + +A+ L  
Sbjct: 410 VTVTSILSACAQLGALSLGKWV-HDLINRESFESNIFVSTALIDMYAKCGSITEAQRLFS 468

Query: 579 QTPGGGDCMMWSSLLRSCRVHG---------NEIIGRRVA 609
             P   + + W++++    +HG         NE++  RV+
Sbjct: 469 MMP-EKNAVTWNAMISGYGLHGYGHEALNLFNEMLHSRVS 507


>gi|359475985|ref|XP_002281998.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
            [Vitis vinifera]
          Length = 1580

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 175/605 (28%), Positives = 311/605 (51%), Gaps = 17/605 (2%)

Query: 66   LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
            L D+ P  D+  +N  +S C        A+  +  M    I   A T   VL+  +    
Sbjct: 862  LSDDNP--DVFCWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDD 919

Query: 126  YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
               G Q+H   +  G   ++ + + LV++Y +MG +  A ++F+++   +L +WN M+ +
Sbjct: 920  LELGKQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISS 979

Query: 186  FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE---GKQLHSHVIKLGW 242
              + S  +E + ++  +  EG++P+  +   ++R CS   L+D     +Q+H H +K G 
Sbjct: 980  CAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACS--SLIDGLNISRQIHVHALKTGN 1037

Query: 243  VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            +  + FVA  L+D YS  G + EA+  F      D+  WN+++  Y   +    ALELF 
Sbjct: 1038 I-ADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELF- 1095

Query: 303  RMQLCRKRPSIRSFVEFLNFASRTGNVYF---GKQIHGYVTKLGFDHGSVHVQSALTDMY 359
               L  K       +     A   G +     GKQIH +  K GFD   +HV S + DMY
Sbjct: 1096 --SLIHKSGEKSDQITLATAAKACGCLVLLDQGKQIHAHAIKAGFD-SDLHVNSGILDMY 1152

Query: 360  GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
             KC  + ++  VF            S+++  + +GN   A+ ++  M    +  DE T +
Sbjct: 1153 IKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFA 1212

Query: 420  TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
            T +KA S   +   G  R LH   IK    S+  V  SL+D Y++CG+IE ++++F+K+ 
Sbjct: 1213 TLIKASSCVTALEQG--RQLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMN 1270

Query: 480  SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
              N+  + +++ G +++G   EA+++ + M   G+ PD+V+F+ +L+ C+H+G+  E   
Sbjct: 1271 VRNIALWNAMLVGLAQHGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYE 1330

Query: 540  VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
              +SM + YGI+ + +HYSC++D LGRAG++ +A+++++  P      +  +LL +CR+ 
Sbjct: 1331 YLHSMPNDYGIEPEIEHYSCLVDALGRAGLVQEADKVIETMPFKASASINRALLGACRIQ 1390

Query: 600  GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            G+   G+RVA  L  LEP D A Y  +SN Y+    ++     R+    + + +D G S 
Sbjct: 1391 GDVETGKRVAARLFALEPFDSAAYVLLSNIYAAANRWDDVTDARKMMKRKNVKKDPGFSW 1450

Query: 660  IEVNS 664
            I+V +
Sbjct: 1451 IDVKN 1455



 Score =  185 bits (470), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 120/441 (27%), Positives = 220/441 (49%), Gaps = 10/441 (2%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++  +N  ++ + K G    A+++F++M   D++++N +IS C +    ++++ L+ +++
Sbjct: 938  DVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEESVNLFIDLL 997

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGI----QIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
              G+K    T +SVL  CS+     +G+    QIH   L  G   + ++ + L+D+Y + 
Sbjct: 998  HEGLKPDHFTLASVLRACSS---LIDGLNISRQIHVHALKTGNIADSFVATTLIDVYSKS 1054

Query: 159  GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
            G    A  LF    + +LA WN M+  +   +   + L +++ +   G + + ++     
Sbjct: 1055 GKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQITLATAA 1114

Query: 219  RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
            + C   +LLD+GKQ+H+H IK G+ D ++ V + ++D Y  CG ++ A   F++I   D 
Sbjct: 1115 KACGCLVLLDQGKQIHAHAIKAGF-DSDLHVNSGILDMYIKCGDMVNAGIVFNYISAPDD 1173

Query: 279  ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            ++W S++S   D      AL ++ RM+  R  P   +F   +  +S    +  G+Q+H  
Sbjct: 1174 VAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGRQLHAN 1233

Query: 339  VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            V KL        V ++L DMY KC  IE +  +F+    R++   N+++  L   GN ++
Sbjct: 1234 VIKLDCVSDPF-VGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHGNAEE 1292

Query: 399  AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
            AV +F  M   GI  D V+    L A S  A     +   LH      G E  I     L
Sbjct: 1293 AVNLFKSMKSHGIEPDRVSFIGILSACS-HAGLTSEAYEYLHSMPNDYGIEPEIEHYSCL 1351

Query: 459  MDAYSRCGHIELSHQVFEKIP 479
            +DA  R G ++ + +V E +P
Sbjct: 1352 VDALGRAGLVQEADKVIETMP 1372



 Score =  177 bits (449), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 144/570 (25%), Positives = 270/570 (47%), Gaps = 41/570 (7%)

Query: 47   SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF-----RHPKQALYLYDEM 101
            SN  +  + K G L+SA+++FD  P RD+VT+N ++            + ++ L+L+  +
Sbjct: 659  SNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDSNDGNAQEGLHLFRLL 718

Query: 102  VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             +     +  T + VL +C N+G       +H   + +G   ++++   LV++Y + G  
Sbjct: 719  RASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRM 778

Query: 162  VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              A  LFD + ER++  WN+ML+ + +L    E  +++++    G+ P+  S   ++ G 
Sbjct: 779  RDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNGV 838

Query: 222  SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
            S  +  DEGK L                    V  Y+A  SL +           DV  W
Sbjct: 839  S-EVNWDEGKWLADQ-----------------VQAYAAKLSLSDDNP--------DVFCW 872

Query: 282  NSIVS--IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
            N  +S  ++A  +  + A+E F  M          + +  L   + T ++  GKQ+HG  
Sbjct: 873  NKKLSECLWAGDN--WGAIECFVNMNGLNIDYDAVTLLVVLAAVAGTDDLELGKQVHGIA 930

Query: 340  TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             K G D   V V ++L +MY K      +  VF       L   NS+++S   S   +++
Sbjct: 931  VKSGLD-SDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLISWNSMISSCAQSSLEEES 989

Query: 400  VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
            V +F  ++ EG+  D  TL++ L+A S S    L   R +H  A+K+G  ++  V+ +L+
Sbjct: 990  VNLFIDLLHEGLKPDHFTLASVLRACS-SLIDGLNISRQIHVHALKTGNIADSFVATTLI 1048

Query: 460  DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            D YS+ G +E +  +F+     ++ C+ ++M GY     G++AL++  ++ + G   D++
Sbjct: 1049 DVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQI 1108

Query: 520  TFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            T       C    ++ +G Q+  +++K+  G D+D    S ++DM  + G +  A  +  
Sbjct: 1109 TLATAAKACGCLVLLDQGKQIHAHAIKA--GFDSDLHVNSGILDMYIKCGDMVNAGIVFN 1166

Query: 579  QTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
                  D + W+S++  C  +GNE    R+
Sbjct: 1167 YISAPDD-VAWTSMISGCVDNGNEDQALRI 1195



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 139/565 (24%), Positives = 267/565 (47%), Gaps = 38/565 (6%)

Query: 41   QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            + +++ S   ++ + K G +  A+ LFD M  RD+V +N+++ G  +    K+A  L+ E
Sbjct: 759  EWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSE 818

Query: 101  MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
                G++    +   +L+  S    + EG  +  +V +    L+L   +P          
Sbjct: 819  FHRSGLRPDEFSVQLILNGVSEVN-WDEGKWLADQVQAYAAKLSLSDDNP---------- 867

Query: 161  SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
                 D+F          WN  L            +  +  M    ++ + ++   ++  
Sbjct: 868  -----DVF---------CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAA 913

Query: 221  CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
             +    L+ GKQ+H   +K G +D ++ VAN+LV+ YS  G    A++ F+ +   D+IS
Sbjct: 914  VAGTDDLELGKQVHGIAVKSG-LDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLIS 972

Query: 281  WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF-ASRTGNVYFGKQIHGYV 339
            WNS++S  A   L  +++ LF  +     +P   +    L   +S    +   +QIH + 
Sbjct: 973  WNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVHA 1032

Query: 340  TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             K G +     V + L D+Y K   +E +  +F++     L C N++M   +   + K A
Sbjct: 1033 LKTG-NIADSFVATTLIDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKA 1091

Query: 400  VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
            +E+F  +   G   D++TL+T  KA       + G  + +H  AIK+GF+S++ V+  ++
Sbjct: 1092 LELFSLIHKSGEKSDQITLATAAKACGCLVLLDQG--KQIHAHAIKAGFDSDLHVNSGIL 1149

Query: 460  DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            D Y +CG +  +  VF  I +P+ V +TS+++G   NG   +AL +   M Q  ++PD+ 
Sbjct: 1150 DMYIKCGDMVNAGIVFNYISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEY 1209

Query: 520  TFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGID--ADRQHYSCMIDMLGRAGILDKAEEL 576
            TF  ++   +    +++G QL  N +K    +D  +D    + ++DM  + G ++ A  L
Sbjct: 1210 TFATLIKASSCVTALEQGRQLHANVIK----LDCVSDPFVGTSLVDMYAKCGNIEDAYRL 1265

Query: 577  LQQTPGGGDCMMWSSLLRSCRVHGN 601
             ++     +  +W+++L     HGN
Sbjct: 1266 FKKM-NVRNIALWNAMLVGLAQHGN 1289



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 118/471 (25%), Positives = 223/471 (47%), Gaps = 45/471 (9%)

Query: 133  HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL--- 189
            H R++  G   + ++ + L+ +Y + G    A  +FD  PER+L TWN +L A+      
Sbjct: 644  HARIVVSGSAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYAASVDS 703

Query: 190  --SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                  E L ++  ++A       ++   +++ C     L   + +H + IK+G ++ ++
Sbjct: 704  NDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIG-LEWDV 762

Query: 248  FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            FV+ ALV+ YS CG + +A+  FD++   DV+ WN ++  Y    L  +A +LF      
Sbjct: 763  FVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFSEFHRS 822

Query: 308  RKRPSIRSFVEFLNFASRTG---NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
              RP   S    LN  S        +   Q+  Y  KL           +L+D       
Sbjct: 823  GLRPDEFSVQLILNGVSEVNWDEGKWLADQVQAYAAKL-----------SLSD------- 864

Query: 365  IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
               +  VF         C N  ++  L +G+   A+E F  M    I  D VTL   L A
Sbjct: 865  --DNPDVF---------CWNKKLSECLWAGDNWGAIECFVNMNGLNIDYDAVTLLVVLAA 913

Query: 425  LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            ++ +    LG  + +H  A+KSG +S+++V+ SL++ YS+ G    + +VF  +   +++
Sbjct: 914  VAGTDDLELG--KQVHGIAVKSGLDSDVSVANSLVNMYSKMGCAYFAREVFNDMKHLDLI 971

Query: 485  CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH--SGMVKEGQLVFN 542
             + S+++  +++ +  E++++   ++  GL PD  T   VL  C+    G+    Q+  +
Sbjct: 972  SWNSMISSCAQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNISRQIHVH 1031

Query: 543  SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            ++K+  G  AD    + +ID+  ++G +++AE L Q      D   W++++
Sbjct: 1032 ALKT--GNIADSFVATTLIDVYSKSGKMEEAEFLFQNKD-DLDLACWNAMM 1079



 Score =  137 bits (346), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 173/354 (48%), Gaps = 10/354 (2%)

Query: 51   IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
            ID + KSG +  A+ LF      D+  +N ++ G       K+AL L+  +   G K   
Sbjct: 1048 IDVYSKSGKMEEAEFLFQNKDDLDLACWNAMMFGYIIGNDGKKALELFSLIHKSGEKSDQ 1107

Query: 111  STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
             T ++    C       +G QIH   +  GF  +L++ S ++D+Y++ G  V A  +F+ 
Sbjct: 1108 ITLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNY 1167

Query: 171  LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            +   +   W  M+    +    D+ LR+Y++M+   V P+  +F  +++  S    L++G
Sbjct: 1168 ISAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQG 1227

Query: 231  KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
            +QLH++VIKL  V  + FV  +LVD Y+ CG++ +A + F  + V ++  WN+++   A 
Sbjct: 1228 RQLHANVIKLDCVS-DPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQ 1286

Query: 291  YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG--- 347
            +    +A+ LF  M+     P   SF+  L+  S  G      + + Y+  +  D+G   
Sbjct: 1287 HGNAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAG---LTSEAYEYLHSMPNDYGIEP 1343

Query: 348  SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
             +   S L D  G+  +++ +  V E+ P    +   S+  +LL +  I+  VE
Sbjct: 1344 EIEHYSCLVDALGRAGLVQEADKVIETMP---FKASASINRALLGACRIQGDVE 1394



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 72/265 (27%), Positives = 130/265 (49%), Gaps = 3/265 (1%)

Query: 12   TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
            T+ T A  C  +V L     + ++  +     +++ ++  +D ++K G + +A  +F+ +
Sbjct: 1109 TLATAAKACGCLVLLDQGKQIHAHAIKAGFDSDLHVNSGILDMYIKCGDMVNAGIVFNYI 1168

Query: 71   PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             A D V +  +ISGC    +  QAL +Y  M    +     TF++++   S      +G 
Sbjct: 1169 SAPDDVAWTSMISGCVDNGNEDQALRIYHRMRQSRVMPDEYTFATLIKASSCVTALEQGR 1228

Query: 131  QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            Q+H  V+ L    + ++G+ LVD+Y + G    A  LF ++  RN+A WN ML    +  
Sbjct: 1229 QLHANVIKLDCVSDPFVGTSLVDMYAKCGNIEDAYRLFKKMNVRNIALWNAMLVGLAQHG 1288

Query: 191  RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ-LHSHVIKLGWVDVNIFV 249
              +E + ++  MK+ G+EP+ +SF  ++  CS   L  E  + LHS     G ++  I  
Sbjct: 1289 NAEEAVNLFKSMKSHGIEPDRVSFIGILSACSHAGLTSEAYEYLHSMPNDYG-IEPEIEH 1347

Query: 250  ANALVDFYSACGSLIEAKKSFDFIP 274
             + LVD     G + EA K  + +P
Sbjct: 1348 YSCLVDALGRAGLVQEADKVIETMP 1372



 Score = 86.7 bits (213), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 104/448 (23%), Positives = 192/448 (42%), Gaps = 48/448 (10%)

Query: 230  GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
            GK  H+ ++  G    + F++N L+  YS CGSL  A++ FD  P  D+++WN+I+  YA
Sbjct: 640  GKCTHARIVVSGSAG-DHFLSNNLLTMYSKCGSLSSARQVFDTTPERDLVTWNAILGAYA 698

Query: 290  -----DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
                 +     + L LF  ++      +  +    L     +G ++  + +HGY  K+G 
Sbjct: 699  ASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLKLCLNSGCLWAAEGVHGYAIKIGL 758

Query: 345  DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
            +   V V  AL ++Y KC  +  +  +F+    R +   N ++   +  G  K+A ++F 
Sbjct: 759  E-WDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGYVQLGLEKEAFQLFS 817

Query: 405  FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
                 G+  DE ++   L  +S     N    + L        + + +++S    D +  
Sbjct: 818  EFHRSGLRPDEFSVQLILNGVS---EVNWDEGKWL--ADQVQAYAAKLSLSDDNPDVF-- 870

Query: 465  CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
            C + +LS  ++       + CF + MNG +                   +  D VT L V
Sbjct: 871  CWNKKLSECLWAGDNWGAIECFVN-MNGLN-------------------IDYDAVTLLVV 910

Query: 525  LAGCNHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
            LA    +  ++ G+ V   ++KS  G+D+D    + +++M  + G    A E+       
Sbjct: 911  LAAVAGTDDLELGKQVHGIAVKS--GLDSDVSVANSLVNMYSKMGCAYFAREVFNDMK-H 967

Query: 584  GDCMMWSSLLRSCRVHGNEIIGRRVANILME-----LEPVDFAVYSQVSNFYSEIGEFEV 638
             D + W+S++ SC       +     N+ ++     L+P  F + S +    S I    +
Sbjct: 968  LDLISWNSMISSC---AQSSLEEESVNLFIDLLHEGLKPDHFTLASVLRACSSLIDGLNI 1024

Query: 639  SMQIRETALARKLTRD--IGHSLIEVNS 664
            S QI   AL      D  +  +LI+V S
Sbjct: 1025 SRQIHVHALKTGNIADSFVATTLIDVYS 1052



 Score = 80.1 bits (196), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 59/214 (27%), Positives = 105/214 (49%), Gaps = 8/214 (3%)

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            L  A  T N+  GK  H  +   G   G   + + L  MY KC  + S+  VF++ P R
Sbjct: 627 LLRTAISTHNLLLGKCTHARIVVSG-SAGDHFLSNNLLTMYSKCGSLSSARQVFDTTPER 685

Query: 379 SLECCNSLMTSLLHS-----GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
            L   N+++ +   S     GN ++ + +F  +         +TL+  LK L ++ S  L
Sbjct: 686 DLVTWNAILGAYAASVDSNDGNAQEGLHLFRLLRASLGSTTRMTLAPVLK-LCLN-SGCL 743

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
            +   +H  AIK G E ++ VS +L++ YS+CG +  +  +F+ +   +VV +  ++ GY
Sbjct: 744 WAAEGVHGYAIKIGLEWDVFVSGALVNIYSKCGRMRDARLLFDWMRERDVVLWNMMLKGY 803

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
            + G+ +EA  +     + GL PD+ +   +L G
Sbjct: 804 VQLGLEKEAFQLFSEFHRSGLRPDEFSVQLILNG 837


>gi|302760085|ref|XP_002963465.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
 gi|300168733|gb|EFJ35336.1| hypothetical protein SELMODRAFT_79732 [Selaginella moellendorffii]
          Length = 829

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 172/632 (27%), Positives = 318/632 (50%), Gaps = 19/632 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+   N  +  +        AK  FD +  R++ ++  L++        K+ L   + M 
Sbjct: 78  NLILGNHIVSMYAHCDSPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMR 137

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++  A TF + L  C +     +GI+IH  V+     ++  + + L+++Y + G   
Sbjct: 138 QDGVRPDAVTFITALGSCGDPESLRDGIRIHQMVVDSRLEIDPKVSNALLNMYKKCGSLS 197

Query: 163 RALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
            A  +F ++   RN+ +W++M  A        E LR +  M   G++    +   ++  C
Sbjct: 198 HAKRVFAKMERTRNVISWSIMAGAHALHGNVWEALRHFRFMLLLGIKATKSAMVTILSAC 257

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI--PVDDVI 279
           S   L+ +G+ +HS  I L   +  + VANA++  Y  CG++ EA+K FD +   + DV+
Sbjct: 258 SSPALVQDGRLIHS-CIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVV 316

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN ++S Y   D   DA++L+ RMQL   R    ++V  L+  S   +V  G+ +H  +
Sbjct: 317 SWNIMLSAYVHNDRGKDAIQLYQRMQL---RADKVTYVSLLSACSSAEDVGLGRVLHKQI 373

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
                +  +V V +AL  MY KC     + AVF+    RS+    +++++ +    + +A
Sbjct: 374 VNDELEK-NVIVGNALVSMYAKCGSHTEARAVFDKMEQRSIISWTTIISAYVRRRLVAEA 432

Query: 400 VEMFGFMVD-------EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
             +F  M++       + +  D +   T L A +  ++   G  +++   A   G  S+ 
Sbjct: 433 CHLFQQMLELEKNGSSQRVKPDALAFVTILNACADVSALEQG--KMVSEQAASCGLSSDK 490

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
           AV  ++++ Y +CG IE   ++F+ + S P+V  + +++  Y++ G   EAL +   M  
Sbjct: 491 AVGTAVVNLYGKCGEIEEGRRIFDGVCSRPDVQLWNAMIAVYAQFGQSHEALKLFWRMEM 550

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY-GIDADRQHYSCMIDMLGRAGIL 570
            G+ PD  +F+ +L  C+H+G+  +G+  F SM + Y  +    QH+ C+ D+LGR G L
Sbjct: 551 EGVRPDSFSFVSILLACSHTGLEDQGKSYFTSMTTEYRNVTRTIQHFGCVADLLGRGGRL 610

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +AEE L++ P   D + W+SLL +CR H +    + VAN L+ LEP     Y  +SN Y
Sbjct: 611 KEAEEFLEKLPVKPDAVAWTSLLAACRNHRDLKRAKEVANKLLRLEPRCATGYVALSNIY 670

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
           +E+ ++    ++R+    + + ++ G S IE+
Sbjct: 671 AELQKWHAVAKVRKFMAEQGVKKERGVSTIEI 702



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 172/349 (49%), Gaps = 15/349 (4%)

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           ++ + V     ++  +++ C+    L EG+++HS  +K   +  N+ + N +V  Y+ C 
Sbjct: 34  LEKQAVRAENATYARLLQRCARAQALPEGRKIHSLAVKHNLLPGNLILGNHIVSMYAHCD 93

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
           S  +AK +FD +   ++ SW  +V+ +A      + L    RM+    RP   +F+  L 
Sbjct: 94  SPGDAKAAFDALEQRNLYSWTGLVAAFAISGQSKETLRALERMRQDGVRPDAVTFITALG 153

Query: 322 FASRTGNVYFGKQIHGYV--TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
                 ++  G +IH  V  ++L  D     V +AL +MY KC  +  +  VF       
Sbjct: 154 SCGDPESLRDGIRIHQMVVDSRLEID---PKVSNALLNMYKKCGSLSHAKRVFAKMERTR 210

Query: 380 LECCNSLMTS--LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
                S+M     LH GN+ +A+  F FM+  GI   +  + T L A S  A    G  R
Sbjct: 211 NVISWSIMAGAHALH-GNVWEALRHFRFMLLLGIKATKSAMVTILSACSSPALVQDG--R 267

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP--NVVCFTSIMNGYSR 495
           L+H C   SGFES + V+ ++M  Y RCG +E + +VF+ +     +VV +  +++ Y  
Sbjct: 268 LIHSCIALSGFESELLVANAVMTMYGRCGAVEEARKVFDAMDEALRDVVSWNIMLSAYVH 327

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           N  G++A+ + + M  R    DKVT++ +L+ C+ +  V  G+++   +
Sbjct: 328 NDRGKDAIQLYQRMQLRA---DKVTYVSLLSACSSAEDVGLGRVLHKQI 373


>gi|302793011|ref|XP_002978271.1| hypothetical protein SELMODRAFT_465 [Selaginella moellendorffii]
 gi|300154292|gb|EFJ20928.1| hypothetical protein SELMODRAFT_465 [Selaginella moellendorffii]
          Length = 680

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 165/587 (28%), Positives = 315/587 (53%), Gaps = 20/587 (3%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I  + K G L+ A K+ +++ +RD+  + ++I+    F    +A  L   M   G + S 
Sbjct: 106 IKMYGKCGSLDEAWKVMEKIESRDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPSK 165

Query: 111 STFSSVLSVCSNAGFYTEGIQI----HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
            TF +VL  C +   + E  Q+    H  +   G   ++ +G+ LV++Y R G + +A +
Sbjct: 166 MTFMAVLRACKD---HPEARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGDAQQAQE 222

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +F ++  R++++WN +L A+   SR ++ L +Y +M  EGV+P+ L+   ++  C+    
Sbjct: 223 VFSQIEARDVSSWNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRLTLNTVIDVCASLKD 282

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L++G ++H  +   G+   ++ +  AL+ FY  CG L  A + F+ +P  D ++WN++++
Sbjct: 283 LEQGSRIHQQIASSGFAS-DLMLDTALITFYGRCGKLEAALEIFEALPARDNVTWNTMIA 341

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
              D+     A+  F RMQ     PS  + +  L      G+V   K +H  V + GF+ 
Sbjct: 342 SLNDHSSPEAAMGFFQRMQQEGMAPSRVTLLTVLGL---CGSVGEAKLVHSCVRESGFEQ 398

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            S  V++ L   YG+C  +  ++ +FE+ P +     N++M +    G  + A+E+F  M
Sbjct: 399 DS-EVKNTLITAYGRCGGLPQALEIFEALPRKIESSWNAMMGAYAAQGKPRAALELFHRM 457

Query: 407 VDEGIGLDE-VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           V     L++ +  S +   L++++  +L   +L+     +S  E +  V  +++D  +RC
Sbjct: 458 VK----LEQMIQPSVSTIILALNSCRSLADGKLVISSIPESLVEEDGFVQAAMVDMLARC 513

Query: 466 GHIELSHQVFEKI-PSPNVVCFTSIMNGYSRNGMGREALDMLEVM-IQRGLIPDKVTFLC 523
           G ++ + + F K+  + + V +T+++  ++R+G    AL + E M +  G  PD+VT + 
Sbjct: 514 GSLDDASEFFHKLGKNKDTVLWTTMVAAFARHGHSARALGLFEAMLLDGGGSPDEVTLVS 573

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILDKAEELLQQTPG 582
           VL+ C+H+G++  G  +F S  S +G+     + Y C+ID+LGRAG L +AE L+  +  
Sbjct: 574 VLSACSHAGLLHRGLQIFASTASDFGVQWRSLELYGCVIDLLGRAGQLQEAEMLVASSDF 633

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629
            G  ++W +LL + +V GNE  G+R A  ++EL+P + A +  +SN 
Sbjct: 634 SGSSVLWITLLGASKVRGNEEAGKRAAVKVLELDPGNAAAHVILSNL 680



 Score =  215 bits (548), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 142/557 (25%), Positives = 273/557 (49%), Gaps = 23/557 (4%)

Query: 54  FVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST 112
           +V+ G + SA+KLFD M   R+   + ++IS   +     +AL L+ + +  G++ S  T
Sbjct: 5   YVRCGSVESARKLFDSMAVERNGECWTVMISAYVRRGWINEALLLFKKSLLEGVRPSEGT 64

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY--IGSPLVDLYMRMGPSVRALDLFDE 170
           F ++L  CS      +G ++H  +   GF  ++   + + L+ +Y + G    A  + ++
Sbjct: 65  FIALLHACSRPASLDQGKKLHRLLEEAGFQESIAPSLATSLIKMYGKCGSLDEAWKVMEK 124

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  R++  W +M+ +     + D    +  +M  EG  P+ ++F  ++R C       E 
Sbjct: 125 IESRDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPSKMTFMAVLRACKDH---PEA 181

Query: 231 KQ----LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +Q    LH  + + G ++ ++ V  +LV+ Y+  G   +A++ F  I   DV SWN +++
Sbjct: 182 RQVGGVLHGLIRERG-LESDVGVGTSLVNMYARWGDAQQAQEVFSQIEARDVSSWNCLLA 240

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y+       AL L+  M L   +P   +    ++  +   ++  G +IH  +   GF  
Sbjct: 241 AYSRCSRQEQALVLYREMMLEGVKPDRLTLNTVIDVCASLKDLEQGSRIHQQIASSGF-A 299

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             + + +AL   YG+C  +E+++ +FE+ P R     N+++ SL    + + A+  F  M
Sbjct: 300 SDLMLDTALITFYGRCGKLEAALEIFEALPARDNVTWNTMIASLNDHSSPEAAMGFFQRM 359

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             EG+    VTL T L         ++G  +L+H C  +SGFE +  V  +L+ AY RCG
Sbjct: 360 QQEGMAPSRVTLLTVL-----GLCGSVGEAKLVHSCVRESGFEQDSEVKNTLITAYGRCG 414

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI--QRGLIPDKVTFLCV 524
            +  + ++FE +P      + ++M  Y+  G  R AL++   M+  ++ + P   T +  
Sbjct: 415 GLPQALEIFEALPRKIESSWNAMMGAYAAQGKPRAALELFHRMVKLEQMIQPSVSTIILA 474

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  C     + +G+LV +S+     ++ D    + M+DML R G LD A E   +     
Sbjct: 475 LNSCRS---LADGKLVISSIPESL-VEEDGFVQAAMVDMLARCGSLDDASEFFHKLGKNK 530

Query: 585 DCMMWSSLLRSCRVHGN 601
           D ++W++++ +   HG+
Sbjct: 531 DTVLWTTMVAAFARHGH 547



 Score =  173 bits (438), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/439 (28%), Positives = 214/439 (48%), Gaps = 20/439 (4%)

Query: 151 LVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
           L+ +Y+R G    A  LFD +  ERN   W +M+ A+      +E L ++ K   EGV P
Sbjct: 1   LLGMYVRCGSVESARKLFDSMAVERNGECWTVMISAYVRRGWINEALLLFKKSLLEGVRP 60

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD-VNIFVANALVDFYSACGSLIEAKK 268
           +  +F  ++  CS    LD+GK+LH  + + G+ + +   +A +L+  Y  CGSL EA K
Sbjct: 61  SEGTFIALLHACSRPASLDQGKKLHRLLEEAGFQESIAPSLATSLIKMYGKCGSLDEAWK 120

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF------ 322
             + I   DV  W  +++  + +  +  A EL  RM L   RPS  +F+  L        
Sbjct: 121 VMEKIESRDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPSKMTFMAVLRACKDHPE 180

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
           A + G V     +HG + + G +   V V ++L +MY +    + +  VF     R +  
Sbjct: 181 ARQVGGV-----LHGLIRERGLE-SDVGVGTSLVNMYARWGDAQQAQEVFSQIEARDVSS 234

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            N L+ +       + A+ ++  M+ EG+  D +TL+T +   +       GS   +H  
Sbjct: 235 WNCLLAAYSRCSRQEQALVLYREMMLEGVKPDRLTLNTVIDVCASLKDLEQGS--RIHQQ 292

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
              SGF S++ +  +L+  Y RCG +E + ++FE +P+ + V + +++   + +     A
Sbjct: 293 IASSGFASDLMLDTALITFYGRCGKLEAALEIFEALPARDNVTWNTMIASLNDHSSPEAA 352

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           +   + M Q G+ P +VT L VL  C   G V E +LV + ++   G + D +  + +I 
Sbjct: 353 MGFFQRMQQEGMAPSRVTLLTVLGLC---GSVGEAKLVHSCVRE-SGFEQDSEVKNTLIT 408

Query: 563 MLGRAGILDKAEELLQQTP 581
             GR G L +A E+ +  P
Sbjct: 409 AYGRCGGLPQALEIFEALP 427



 Score = 93.6 bits (231), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 70/242 (28%), Positives = 124/242 (51%), Gaps = 6/242 (2%)

Query: 355 LTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           L  MY +C  +ES+  +F+S A  R+ EC   ++++ +  G I +A+ +F   + EG+  
Sbjct: 1   LLGMYVRCGSVESARKLFDSMAVERNGECWTVMISAYVRRGWINEALLLFKKSLLEGVRP 60

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA--VSCSLMDAYSRCGHIELS 471
            E T    L A S  AS + G  + LH    ++GF+ +IA  ++ SL+  Y +CG ++ +
Sbjct: 61  SEGTFIALLHACSRPASLDQG--KKLHRLLEEAGFQESIAPSLATSLIKMYGKCGSLDEA 118

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            +V EKI S +V  +T ++   S  G    A ++L+ M   G  P K+TF+ VL  C   
Sbjct: 119 WKVMEKIESRDVELWTVMIASLSHFGKLDRAFELLKRMDLEGDRPSKMTFMAVLRACKDH 178

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
              ++   V + +    G+++D    + +++M  R G   +A+E+  Q     D   W+ 
Sbjct: 179 PEARQVGGVLHGLIRERGLESDVGVGTSLVNMYARWGDAQQAQEVFSQIE-ARDVSSWNC 237

Query: 592 LL 593
           LL
Sbjct: 238 LL 239


>gi|356544848|ref|XP_003540859.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 701

 Score =  265 bits (677), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 167/568 (29%), Positives = 298/568 (52%), Gaps = 19/568 (3%)

Query: 109 SASTFSSV-----LSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSV 162
           S STF S+     L   +N+   T+ +Q+H  V + G    N Y+ + L   Y   G   
Sbjct: 16  STSTFDSLQCGTLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMP 75

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD++  +N   WN M+R +   + P   L +Y KM   G +P+  ++ ++++ C 
Sbjct: 76  YAQHIFDQIVLKNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACG 135

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
             +L + G+++H+ V+ +G ++ +++V N+++  Y   G +  A+  FD + V D+ SWN
Sbjct: 136 DLLLREMGRKVHALVV-VGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWN 194

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY---FGKQIHGYV 339
           +++S +        A E+F  M   R+   +      L   S  G+V     GK+IHGYV
Sbjct: 195 TMMSGFVKNGEARGAFEVFGDM---RRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYV 251

Query: 340 TKLGFDHGSV---HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            + G + G V    + +++ DMY  C  +  +  +FE    + +   NSL++     G+ 
Sbjct: 252 VRNG-ESGRVCNGFLMNSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDA 310

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
             A+E+FG MV  G   DEVT+ + L A +  ++  LG+   +    +K G+  N+ V  
Sbjct: 311 FQALELFGRMVVVGAVPDEVTVISVLAACNQISALRLGAT--VQSYVVKRGYVVNVVVGT 368

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+  Y+ CG +  + +VF+++P  N+   T ++ G+  +G GREA+ +   M+ +G+ P
Sbjct: 369 ALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTP 428

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D+  F  VL+ C+HSG+V EG+ +F  M   Y ++    HYSC++D+LGRAG LD+A  +
Sbjct: 429 DEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAV 488

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           ++      +  +W++LL +CR+H N  +    A  L EL P   + Y  +SN Y+    +
Sbjct: 489 IENMKLKPNEDVWTALLSACRLHRNVKLAVISAQKLFELNPDGVSGYVCLSNIYAAERRW 548

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVNS 664
           E    +R     R+L +   +S +E+N 
Sbjct: 549 EDVENVRALVAKRRLRKPPSYSFVELNK 576



 Score =  183 bits (465), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 125/483 (25%), Positives = 229/483 (47%), Gaps = 7/483 (1%)

Query: 15  TLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKKLFDEMPA 72
           TL  + T+   L+ +L L ++      L  N Y + +    +   GH+  A+ +FD++  
Sbjct: 27  TLLQSLTNSKSLTQALQLHAHVTTGGTLRRNTYLATKLAACYAVCGHMPYAQHIFDQIVL 86

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           ++   +N +I G      P +AL+LY +M+  G K    T+  VL  C +      G ++
Sbjct: 87  KNSFLWNSMIRGYACNNSPSRALFLYLKMLHFGQKPDNFTYPFVLKACGDLLLREMGRKV 146

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  V+  G   ++Y+G+ ++ +Y + G    A  +FD +  R+L +WN M+  F +    
Sbjct: 147 HALVVVGGLEEDVYVGNSILSMYFKFGDVEAARVVFDRMLVRDLTSWNTMMSGFVKNGEA 206

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD--VNIFVA 250
                ++  M+ +G   +  +   ++  C   M L  GK++H +V++ G      N F+ 
Sbjct: 207 RGAFEVFGDMRRDGFVGDRTTLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLM 266

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           N+++D Y  C S+  A+K F+ + V DV+SWNS++S Y      F ALELF RM +    
Sbjct: 267 NSIIDMYCNCESVSCARKLFEGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAV 326

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   + +  L   ++   +  G  +  YV K G+    V V +AL  MY  C  +  +  
Sbjct: 327 PDEVTVISVLAACNQISALRLGATVQSYVVKRGYVVNVV-VGTALIGMYANCGSLVCACR 385

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF+  P ++L  C  ++T     G  ++A+ +F  M+ +G+  DE   +  L A S S  
Sbjct: 386 VFDEMPEKNLPACTVMVTGFGIHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGL 445

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSI 489
            + G   + +        E        L+D   R G+++ ++ V E +   PN   +T++
Sbjct: 446 VDEGK-EIFYKMTRDYSVEPRPTHYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDVWTAL 504

Query: 490 MNG 492
           ++ 
Sbjct: 505 LSA 507



 Score =  108 bits (271), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 80/282 (28%), Positives = 134/282 (47%), Gaps = 9/282 (3%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQ----LNIYSSNRTIDDFVKSGHLNSAKKLF 67
           T+  L   C  ++ L     +  Y   N +     N +  N  ID +     ++ A+KLF
Sbjct: 227 TLLALLSACGDVMDLKVGKEIHGYVVRNGESGRVCNGFLMNSIIDMYCNCESVSCARKLF 286

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
           + +  +D+V++N LISG  K     QAL L+  MV  G      T  SVL+ C+      
Sbjct: 287 EGLRVKDVVSWNSLISGYEKCGDAFQALELFGRMVVVGAVPDEVTVISVLAACNQISALR 346

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            G  +   V+  G+ +N+ +G+ L+ +Y   G  V A  +FDE+PE+NL    +M+  F 
Sbjct: 347 LGATVQSYVVKRGYVVNVVVGTALIGMYANCGSLVCACRVFDEMPEKNLPACTVMVTGFG 406

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
              R  E + ++ +M  +GV P+   F  ++  CS   L+DEGK++   + +   V+   
Sbjct: 407 IHGRGREAISIFYEMLGKGVTPDEGIFTAVLSACSHSGLVDEGKEIFYKMTRDYSVEPRP 466

Query: 248 FVANALVDFYSACGSLIEAK---KSFDFIPVDDVISWNSIVS 286
              + LVD     G L EA    ++    P +DV  W +++S
Sbjct: 467 THYSCLVDLLGRAGYLDEAYAVIENMKLKPNEDV--WTALLS 506


>gi|356518094|ref|XP_003527718.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g04860-like [Glycine max]
          Length = 714

 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 162/604 (26%), Positives = 307/604 (50%), Gaps = 16/604 (2%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           +Y +   ID ++K G    A++LF+++P+ D+V++N+LI G  +  HP  AL L+  M+ 
Sbjct: 78  LYVNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQLFVHMLR 137

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
              + + +T +S+L  C     + +G  +H   +  G GL+  + + L  +Y +      
Sbjct: 138 ESFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAGLGLDPQLSNALTSMYAKCDDLEA 197

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           +  LF E+ E+N+ +WN M+ A+ +    D+ +  + +M  EG +P+ ++   ++   ++
Sbjct: 198 SQLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPSPVTMMNLMSANAV 257

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                  + +H ++IK G+   +  V  +LV  Y+  G    AK  ++  P  D+IS   
Sbjct: 258 P------ETVHCYIIKCGFTG-DASVVTSLVCLYAKQGFTDMAKLLYECYPTKDLISLTG 310

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           I+S Y++   +  A+E F +      +P   + +  L+  S   +   G   HGY  K G
Sbjct: 311 IISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISDPSHFAIGCAFHGYGLKNG 370

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
             +  + V + L   Y + + I +++++F     + L   NS+++  + +G   DA+E+F
Sbjct: 371 LTNDCL-VANGLISFYSRFDEILAALSLFFDRSEKPLITWNSMISGCVQAGKSSDAMELF 429

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMD 460
             M   G   D +T+++ L     S    LG  R+   LH   +++  +       +L+D
Sbjct: 430 CQMNMCGQKPDAITIASLL-----SGCCQLGYLRIGETLHGYILRNNVKVEDFTGTALID 484

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y++CG ++ + ++F  I  P +V + SI++GYS  G+  +A      + ++GL PDK+T
Sbjct: 485 MYTKCGRLDYAEKIFYSINDPCLVTWNSIISGYSLYGLEHKAFGCFSKLQEQGLEPDKIT 544

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VLA C H G+V  G   F  M+  YG+    QHY+C++ +LGRAG+  +A E++   
Sbjct: 545 FLGVLAACTHGGLVYAGMEYFRIMRKEYGLMPTLQHYACIVGLLGRAGLFKEAIEIINNM 604

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
               D  +W +LL +C +     +G  +A  L  L   +   Y  +SN Y+ +G ++   
Sbjct: 605 EIRPDSAVWGALLSACWIQQEVKLGECLAKNLFLLNYKNGGFYVSLSNLYAIVGRWDDVA 664

Query: 641 QIRE 644
           ++R+
Sbjct: 665 RVRD 668



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 122/525 (23%), Positives = 240/525 (45%), Gaps = 23/525 (4%)

Query: 88  FRHPKQALYLYDEMVSHGIKESASTFSSVLSVC---------SNAGFYTEGIQIHCRVLS 138
           F     AL ++ +++      +  TFS ++  C          +   + +  QI  ++L 
Sbjct: 12  FHDASSALLIFRQLLQSSANPNHLTFSLLIKACLSSSSSFSRGSPTAWLQVNQIQTQLLK 71

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
            G    LY+ + L+D YM++G +  A  LF++LP  ++ +WN+++  + +   P + L++
Sbjct: 72  RGIDQFLYVNTALIDFYMKLGFTTHARQLFEDLPSADVVSWNVLICGYSQHGHPHDALQL 131

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           +  M  E   PN  +   ++  C    L  +G+ +H+  IK G + ++  ++NAL   Y+
Sbjct: 132 FVHMLRESFRPNQTTIASLLPSCGRRELFLQGRSVHAFGIKAG-LGLDPQLSNALTSMYA 190

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            C  L  ++  F  +   +VISWN+++  Y        A+  F  M     +PS    V 
Sbjct: 191 KCDDLEASQLLFQEMGEKNVISWNTMIGAYGQNGFEDKAVLCFKEMLKEGWQPSP---VT 247

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            +N  S        + +H Y+ K GF  G   V ++L  +Y K    + +  ++E  P +
Sbjct: 248 MMNLMSANA---VPETVHCYIIKCGFT-GDASVVTSLVCLYAKQGFTDMAKLLYECYPTK 303

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
            L     +++S    G ++ AVE F   +   I  D V L + L  +S  +   +G    
Sbjct: 304 DLISLTGIISSYSEKGEVESAVECFIQTLKLDIKPDAVALISVLHGISDPSHFAIGCA-- 361

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
            H   +K+G  ++  V+  L+  YSR   I  +  +F       ++ + S+++G  + G 
Sbjct: 362 FHGYGLKNGLTNDCLVANGLISFYSRFDEILAALSLFFDRSEKPLITWNSMISGCVQAGK 421

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
             +A+++   M   G  PD +T   +L+GC   G ++ G+ +   +     +  +    +
Sbjct: 422 SSDAMELFCQMNMCGQKPDAITIASLLSGCCQLGYLRIGETLHGYILR-NNVKVEDFTGT 480

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMM-WSSLLRSCRVHGNE 602
            +IDM  + G LD AE++         C++ W+S++    ++G E
Sbjct: 481 ALIDMYTKCGRLDYAEKIFYSI--NDPCLVTWNSIISGYSLYGLE 523



 Score = 56.2 bits (134), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 46/182 (25%), Positives = 86/182 (47%), Gaps = 5/182 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   TI +L   C  +  L     L  Y  + N ++  ++    ID + K G L+ A+K+
Sbjct: 439 PDAITIASLLSGCCQLGYLRIGETLHGYILRNNVKVEDFTGTALIDMYTKCGRLDYAEKI 498

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  +    +VT+N +ISG   +    +A   + ++   G++    TF  VL+ C++ G  
Sbjct: 499 FYSINDPCLVTWNSIISGYSLYGLEHKAFGCFSKLQEQGLEPDKITFLGVLAACTHGGLV 558

Query: 127 TEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELPER-NLATWNLML 183
             G++ + R++   +GL   L   + +V L  R G    A+++ + +  R + A W  +L
Sbjct: 559 YAGME-YFRIMRKEYGLMPTLQHYACIVGLLGRAGLFKEAIEIINNMEIRPDSAVWGALL 617

Query: 184 RA 185
            A
Sbjct: 618 SA 619


>gi|302816284|ref|XP_002989821.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
 gi|300142387|gb|EFJ09088.1| hypothetical protein SELMODRAFT_130453 [Selaginella moellendorffii]
          Length = 941

 Score =  265 bits (677), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 168/629 (26%), Positives = 312/629 (49%), Gaps = 15/629 (2%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N  +++Y S  + DD          K +F  M    ++ +  +I+GC +    ++ L ++
Sbjct: 198 NALVHMYGSCGSFDDM---------KSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVF 248

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            +M   G+K +  T+ S++ VC N     EG  I  R+L   F  +  + + L+ LY + 
Sbjct: 249 RKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPFCSSTLLATSLISLYGQC 308

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G   RA  L + + +R++  WN M+ A  +     E + +  +M  EG   N +++  ++
Sbjct: 309 GILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVL 368

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C+    L +G+++H+ V+  G +   + V N+++  Y  CG    A   F+ +P  D 
Sbjct: 369 EACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDD 428

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWN++++         DALELF  M+L   R +  + +  L       ++   +QIH  
Sbjct: 429 VSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLEDLKLARQIHAR 488

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS--GNI 396
               GF   S  V +++ +MY +C  +  +   F+S   + L   + ++ +   S  G  
Sbjct: 489 AAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPG 548

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVS 455
           + A + F  M  EGI   EVT  + L A   +A A L   R +H  A  SGF E+++ + 
Sbjct: 549 RRAFKFFQEMEAEGIKPGEVTFVSALDA--CAAMATLEHGRSMHRRAAASGFVETSLVLG 606

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            ++++ Y +CG    +  VF+++P   ++ + S++  Y+ NG   EAL  L+ M+ +G  
Sbjct: 607 NTIINMYGKCGSPSDAKLVFDQMPEKCLISWNSLIVAYAHNGHALEALSSLQEMLLQGFD 666

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD  T + +L G +H+G+++ G   F S    +G++       C++D+L R G LD AEE
Sbjct: 667 PDSGTSVSILYGLSHAGLLERGVEHFRSSIQDHGLEPSSGQLKCLVDLLARKGFLDAAEE 726

Query: 576 LLQQTPG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           L+  +P    D + W +LL +C+ +G+   G R A  + ELEP     +  ++N Y+ +G
Sbjct: 727 LILASPACQADTIAWMTLLAACKSYGDPQRGIRCAERVFELEPQHSGSFVVLANLYASVG 786

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            +  + +IR+      + ++ G S IE++
Sbjct: 787 RWSDASRIRKMMERMSVKKEPGCSWIELS 815



 Score =  192 bits (488), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 141/555 (25%), Positives = 275/555 (49%), Gaps = 9/555 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI  SN  ++ + K   +  A+K+FD M  RD+V++  +++   +     QAL     M 
Sbjct: 92  NIIISNSLVNMYGKCQDVPCAEKVFDGMLLRDVVSWTAMLAVYAQNGCWSQALECLSRMD 151

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G+K +  TF +++ VC+       G +IH R+++ G   +  +G+ LV +Y   G   
Sbjct: 152 AEGVKPNQVTFVTIVDVCAKLRLLDLGRKIHHRIINEGLEPDGILGNALVHMYGSCGSFD 211

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
               +F  + + ++  W  M+    +  + +E L ++ KM  EGV+ N +++  MV  C 
Sbjct: 212 DMKSVFSRMGQSSVLLWTTMIAGCSQNGQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCR 271

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               + EG+ + + +++  +   +  +A +L+  Y  CG L  AK   + +   DV++WN
Sbjct: 272 NLDAVKEGEMIDARILESPFCS-STLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWN 330

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++V+  A     ++A+ L  RM +     +  +++  L   +    +  G++IH  V   
Sbjct: 331 AMVTACAQNGDNWEAIHLLRRMDMEGFGANKVTYLSVLEACANLEALSQGREIHARVLLC 390

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G     V V +++  MYGKC   E++++VFE+ P +     N+++ + + +   +DA+E+
Sbjct: 391 GLLQREVAVGNSVITMYGKCGQTEAAMSVFEAMPRKDDVSWNAVINASVGNSKFQDALEL 450

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN-IAVSCSLMDA 461
           F  M  EG+  +E TL + L+A       +L   R +H  A   GF  N  AV  S+++ 
Sbjct: 451 FHGMELEGLRSNEFTLLSLLEA--CGGLEDLKLARQIHARAAAGGFGGNSTAVGNSVVNM 508

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY--SRNGMGREALDMLEVMIQRGLIPDKV 519
           Y+RCG +  + + F+ +    +V ++ I+  Y  S++G GR A    + M   G+ P +V
Sbjct: 509 YARCGSLLDAKKAFDSLEEKGLVAWSIILAAYAQSKDGPGRRAFKFFQEMEAEGIKPGEV 568

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+  L  C     ++ G+ +     +   ++      + +I+M G+ G    A+ +  Q
Sbjct: 569 TFVSALDACAAMATLEHGRSMHRRAAASGFVETSLVLGNTIINMYGKCGSPSDAKLVFDQ 628

Query: 580 TPGGGDCMM-WSSLL 593
            P    C++ W+SL+
Sbjct: 629 MP--EKCLISWNSLI 641



 Score =  181 bits (459), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 132/564 (23%), Positives = 265/564 (46%), Gaps = 7/564 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K   +  A  +FD + A+++ ++ ++++   +  H ++AL L+  M   G +     F
Sbjct: 2   YGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVVF 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
              L  C+ +G    G QIH  V+  G   N+ I + LV++Y +      A  +FD +  
Sbjct: 62  VIALDACAASGELDHGRQIHSSVVGSGLTSNIIISNSLVNMYGKCQDVPCAEKVFDGMLL 121

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R++ +W  ML  + +     + L   ++M AEGV+PN ++F  +V  C+   LLD G+++
Sbjct: 122 RDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGRKI 181

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  +I  G ++ +  + NALV  Y +CGS  + K  F  +    V+ W ++++  +    
Sbjct: 182 HHRIINEG-LEPDGILGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQNGQ 240

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             + L +F +M L   + +  +++  +        V  G+ I   + +  F   S  + +
Sbjct: 241 YEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARILESPF-CSSTLLAT 299

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           +L  +YG+C +++ +  + E    R +   N+++T+   +G+  +A+ +   M  EG G 
Sbjct: 300 SLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMDMEGFGA 359

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHIELSH 472
           ++VT  + L+A +   + + G  R +H   +  G  +  +AV  S++  Y +CG  E + 
Sbjct: 360 NKVTYLSVLEACANLEALSQG--REIHARVLLCGLLQREVAVGNSVITMYGKCGQTEAAM 417

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VFE +P  + V + +++N    N   ++AL++   M   GL  ++ T L +L  C    
Sbjct: 418 SVFEAMPRKDDVSWNAVINASVGNSKFQDALELFHGMELEGLRSNEFTLLSLLEACGGLE 477

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +K  + +     +           + +++M  R G L  A++        G  + WS +
Sbjct: 478 DLKLARQIHARAAAGGFGGNSTAVGNSVVNMYARCGSLLDAKKAFDSLEEKG-LVAWSII 536

Query: 593 LRSCRVHGNEIIGRRVANILMELE 616
           L +      +  GRR      E+E
Sbjct: 537 L-AAYAQSKDGPGRRAFKFFQEME 559



 Score =  162 bits (411), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 108/445 (24%), Positives = 220/445 (49%), Gaps = 11/445 (2%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y +      AL +FD +  +N+ +W +M+ A+ +     E L ++ +M+ EG  P+ + 
Sbjct: 1   MYGKCARVTDALMVFDGISAKNVFSWTMMMAAYSQNGHYREALELFTRMQWEGTRPDKVV 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F   +  C+    LD G+Q+HS V+  G +  NI ++N+LV+ Y  C  +  A+K FD +
Sbjct: 61  FVIALDACAASGELDHGRQIHSSVVGSG-LTSNIIISNSLVNMYGKCQDVPCAEKVFDGM 119

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
            + DV+SW +++++YA       ALE   RM     +P+  +FV  ++  ++   +  G+
Sbjct: 120 LLRDVVSWTAMLAVYAQNGCWSQALECLSRMDAEGVKPNQVTFVTIVDVCAKLRLLDLGR 179

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           +IH  +   G +   + + +AL  MYG C   +   +VF      S+    +++     +
Sbjct: 180 KIHHRIINEGLEPDGI-LGNALVHMYGSCGSFDDMKSVFSRMGQSSVLLWTTMIAGCSQN 238

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTL---KALSVSASANLGSCRLLHCCAIKSGFES 450
           G  ++ + +F  M  EG+  +EVT  + +   + L       +   R+L     +S F S
Sbjct: 239 GQYEEGLLVFRKMDLEGVKANEVTYMSMVEVCRNLDAVKEGEMIDARIL-----ESPFCS 293

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           +  ++ SL+  Y +CG ++ +  + E +   +VV + +++   ++NG   EA+ +L  M 
Sbjct: 294 STLLATSLISLYGQCGILDRAKGLLEHMYQRDVVAWNAMVTACAQNGDNWEAIHLLRRMD 353

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G   +KVT+L VL  C +   + +G+ +   +     +  +    + +I M G+ G  
Sbjct: 354 MEGFGANKVTYLSVLEACANLEALSQGREIHARVLLCGLLQREVAVGNSVITMYGKCGQT 413

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRS 595
           + A  + +  P   D + W++++ +
Sbjct: 414 EAAMSVFEAMPRKDD-VSWNAVINA 437


>gi|449455158|ref|XP_004145320.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449470513|ref|XP_004152961.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
 gi|449523079|ref|XP_004168552.1| PREDICTED: pentatricopeptide repeat-containing protein At2g29760,
           chloroplastic-like [Cucumis sativus]
          Length = 733

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 165/569 (28%), Positives = 297/569 (52%), Gaps = 41/569 (7%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV--RALDLFDELPERNLATWNLMLRAFCE 188
           ++H R+L  G   + +  S L         S    A +LFD++P+ NL TWN ++RA+  
Sbjct: 43  EVHARMLRTGLFFDPFSASKLFTASALSSFSTLDYARNLFDQIPQPNLYTWNTLIRAYAS 102

Query: 189 LSRPDEVLRMYNKM--KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            S P +   ++  +  K E + PN  +F ++++  S       G  +H   IKL +  ++
Sbjct: 103 SSDPFQSFVIFLDLLDKCEDL-PNKFTFPFVIKAASELKASRVGTAVHGMAIKLSF-GMD 160

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           +++ N+LV FY ACG L  A++ F  I   DV+SWNS++S +A  +   DALELF +M+ 
Sbjct: 161 LYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKMER 220

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
               P+  + V  L+  ++  ++ FG+ +  Y+ + G     + + +A+ DMY KC  ++
Sbjct: 221 ENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGI-KVDLTLCNAMLDMYTKCGSVD 279

Query: 367 SSVAVFESAPGR-------------------------------SLECCNSLMTSLLHSGN 395
            +  +F+  P R                                +   N L+++   +G 
Sbjct: 280 DAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGK 339

Query: 396 IKDAVEMFGFMVDEGIGL-DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
            K+A+ +F  +    I   DEVTL +TL A +   + +LG    +H    + G   N  +
Sbjct: 340 PKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGG--WIHVYIKREGIVLNCHL 397

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++CG +E + +VF  +   +V  +++++ G   +G G+ A+D+   M +  +
Sbjct: 398 ISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKV 457

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ VTF  VL  C+H+G+V EG++ F+ M+ VYG+  + +HY+CM+D+LGRAG L++A 
Sbjct: 458 KPNSVTFTNVLCACSHAGLVDEGRVFFHEMEPVYGVVPEMKHYACMVDILGRAGFLEEAM 517

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           EL+ +        +W +LL +C +H N  +G   ++ L++LEP +      +SN Y++ G
Sbjct: 518 ELINEMSTTPSASVWGALLGACSLHMNVELGELASDQLLKLEPRNHGAIVLLSNIYAKTG 577

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            +E   ++R+     +L ++ G S IE N
Sbjct: 578 RWEKVSELRKLMRDTELKKEPGCSSIEAN 606



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 121/460 (26%), Positives = 222/460 (48%), Gaps = 39/460 (8%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK-ESASTFSSVLS 118
           L+ A+ LFD++P  ++ T+N LI        P Q+  ++ +++       +  TF  V+ 
Sbjct: 75  LDYARNLFDQIPQPNLYTWNTLIRAYASSSDPFQSFVIFLDLLDKCEDLPNKFTFPFVIK 134

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
             S       G  +H   + L FG++LYI + LV  Y   G    A  LF  +  +++ +
Sbjct: 135 AASELKASRVGTAVHGMAIKLSFGMDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVS 194

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+ AF + + P++ L ++ KM+ E V PN ++   ++  C+  + L+ G+ + S++ 
Sbjct: 195 WNSMISAFAQGNCPEDALELFLKMERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIE 254

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA---DYD--- 292
           + G + V++ + NA++D Y+ CGS+ +A+K FD +P  DV SW  ++  YA   DYD   
Sbjct: 255 RKG-IKVDLTLCNAMLDMYTKCGSVDDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAAR 313

Query: 293 LIF-------------------------DALELFFRMQLCR-KRPSIRSFVEFLNFASRT 326
           L+F                         +AL +F  +QL +  +P   + V  L+  ++ 
Sbjct: 314 LVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQL 373

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G +  G  IH Y+ + G    + H+ S+L DMY KC  +E ++ VF S   R +   +++
Sbjct: 374 GAIDLGGWIHVYIKREGIVL-NCHLISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAM 432

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           +  L   G  K A+++F  M +  +  + VT +  L A S +   + G     H      
Sbjct: 433 IAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVLCACSHAGLVDEGRV-FFHEMEPVY 491

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKI---PSPNV 483
           G    +     ++D   R G +E + ++  ++   PS +V
Sbjct: 492 GVVPEMKHYACMVDILGRAGFLEEAMELINEMSTTPSASV 531



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 157/324 (48%), Gaps = 33/324 (10%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +++Y  N  +  +   G L+ A++LF  +  +D+V++N +IS   +   P+ AL L+ +M
Sbjct: 159 MDLYILNSLVRFYGACGDLSMAERLFKGISCKDVVSWNSMISAFAQGNCPEDALELFLKM 218

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
               +  ++ T   VLS C+       G  +   +   G  ++L + + ++D+Y + G  
Sbjct: 219 ERENVMPNSVTMVGVLSACAKKLDLEFGRWVCSYIERKGIKVDLTLCNAMLDMYTKCGSV 278

Query: 162 VRALDLFDELPERN-------------------------------LATWNLMLRAFCELS 190
             A  LFDE+PER+                               +A WN+++ A+ +  
Sbjct: 279 DDAQKLFDEMPERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNG 338

Query: 191 RPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           +P E L ++N+++   + +P+ ++    +  C+    +D G  +H ++ + G V +N  +
Sbjct: 339 KPKEALAIFNELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIV-LNCHL 397

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            ++LVD Y+ CGSL +A + F  +   DV  W+++++    +     A++LFF MQ  + 
Sbjct: 398 ISSLVDMYAKCGSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKV 457

Query: 310 RPSIRSFVEFLNFASRTGNVYFGK 333
           +P+  +F   L   S  G V  G+
Sbjct: 458 KPNSVTFTNVLCACSHAGLVDEGR 481



 Score =  105 bits (263), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 57/193 (29%), Positives = 106/193 (54%), Gaps = 1/193 (0%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ +++S    +D + K G  ++A+ +F+ MP +++  +N+LIS   +   PK+AL +++
Sbjct: 289 PERDVFSWTIMLDGYAKMGDYDAARLVFNAMPVKEIAAWNVLISAYEQNGKPKEALAIFN 348

Query: 100 EM-VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
           E+ +S   K    T  S LS C+  G    G  IH  +   G  LN ++ S LVD+Y + 
Sbjct: 349 ELQLSKIAKPDEVTLVSTLSACAQLGAIDLGGWIHVYIKREGIVLNCHLISSLVDMYAKC 408

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G   +AL++F  + ER++  W+ M+       R    + ++ +M+   V+PN ++F  ++
Sbjct: 409 GSLEKALEVFYSVEERDVYVWSAMIAGLGMHGRGKAAIDLFFEMQEAKVKPNSVTFTNVL 468

Query: 219 RGCSIGMLLDEGK 231
             CS   L+DEG+
Sbjct: 469 CACSHAGLVDEGR 481


>gi|356537365|ref|XP_003537198.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Glycine max]
          Length = 722

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 167/606 (27%), Positives = 319/606 (52%), Gaps = 16/606 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + YS    +    K   +  A K+FD +P   +  +N +I+GC +  +   A  L+ +M 
Sbjct: 111 DAYSWTTLLSACAKLDSVEHALKVFDGIPKGHIAVWNAVITGCAEKGNRDFAFGLFRDMN 170

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+K    TF+++LS+CS    +  G  +H  V+  GF     + + L+ +Y + G  V
Sbjct: 171 KMGVKADKYTFATMLSLCS-LELFDYGRHVHSVVIKSGFLGWTSVVNSLITMYFKCGCVV 229

Query: 163 RALDLFDELPE---RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
            A ++F+E  E   R+  ++N M+  F  + R ++   ++  M+    +P  ++F  ++ 
Sbjct: 230 DACEVFEEAEEGGSRDYVSYNAMIDGFASVERSEDAFLIFRDMQKGCFDPTEVTFVSVMS 289

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS    L  G Q  S  IK+G+V   + V NA++  YS  G +IE +  F+ +   DV+
Sbjct: 290 SCSS---LRAGCQAQSQAIKMGFVGC-VAVNNAMMTMYSGFGEVIEVQNIFEGMEERDVV 345

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN +VS++   +L  +A+  + +M+     P   ++   L   + T ++   + IH  +
Sbjct: 346 SWNIMVSMFLQENLEEEAMLSYLKMRREGIEPDEFTYGSLL---AATDSLQVVEMIHSLL 402

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G     + V +AL   Y +   I+ +  +F   P +SL   NS+++  L +G+    
Sbjct: 403 CKSGLV--KIEVLNALVSAYCRHGKIKRAFQIFSGVPYKSLISWNSIISGFLMNGHPLQG 460

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +E F  ++   +  +  +LS  L   S  ++ + G  + +H   ++ GF S +++  +L+
Sbjct: 461 LEQFSALLSTQVKPNAYSLSLVLSICSSMSAMSHG--KQVHGYILRHGFSSEVSLGNALV 518

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM-IQRGLIPDK 518
             Y++CG ++ + +VF+ +   + + + +I++ Y+++G G EA+   E M    G+ PD+
Sbjct: 519 TMYAKCGSLDKALRVFDAMVERDTITWNAIISAYAQHGRGEEAVCCFEAMQTSPGIKPDQ 578

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            TF  VL+ C+H+G+V +G  +F++M  VYG      H+SC++D+LGR+G LD+AE +++
Sbjct: 579 ATFTSVLSACSHAGLVDDGIRIFDTMVKVYGFVPSVDHFSCIVDLLGRSGYLDEAERVIK 638

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
               G    +  SL  +C  HGN  +GR VA +++E +  + +VY  +SN  +  G++E 
Sbjct: 639 SGYFGAHSNICWSLFSACAAHGNLGLGRTVARLILERDHNNPSVYVLLSNICAAAGQWEE 698

Query: 639 SMQIRE 644
           +  +RE
Sbjct: 699 AANLRE 704



 Score = 72.0 bits (175), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 49/162 (30%), Positives = 87/162 (53%), Gaps = 3/162 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           +LST++ P   +++ +   C+S+  +S    +  Y  +      +   N  +  + K G 
Sbjct: 467 LLSTQVKPNAYSLSLVLSICSSMSAMSHGKQVHGYILRHGFSSEVSLGNALVTMYAKCGS 526

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM-VSHGIKESASTFSSVLS 118
           L+ A ++FD M  RD +T+N +IS   +    ++A+  ++ M  S GIK   +TF+SVLS
Sbjct: 527 LDKALRVFDAMVERDTITWNAIISAYAQHGRGEEAVCCFEAMQTSPGIKPDQATFTSVLS 586

Query: 119 VCSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMG 159
            CS+AG   +GI+I   ++ + GF  ++   S +VDL  R G
Sbjct: 587 ACSHAGLVDDGIRIFDTMVKVYGFVPSVDHFSCIVDLLGRSG 628


>gi|357474955|ref|XP_003607763.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355508818|gb|AES89960.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 871

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 178/665 (26%), Positives = 327/665 (49%), Gaps = 23/665 (3%)

Query: 7   LPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           LP    ++ +    T++  L +SL++  +      +++Y+S          G L  A+ L
Sbjct: 40  LPPTIHLSRICKHPTTVKTLHASLIISGHPPDTTLISLYAS---------FGFLRHARTL 90

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYD-EMVSHGIKESASTFSSVLSVCSNAGF 125
           F  +P+    ++ L+I            +  Y+    + G       FS +L   S    
Sbjct: 91  FHRLPSPTHHSFKLIIRWHFLNDVHSHVVSFYNLARTTLGSFNDLVVFSILLKTASQLRD 150

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
                ++HC +L      + ++ + LVD Y + G    A  +FDE+P+R++ +W  M+ A
Sbjct: 151 IVLTTKLHCNILKSN-AADSFVLTSLVDAYSKCGKLRDARKVFDEIPDRSVVSWTSMIVA 209

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           + +    +E L ++N+M+   ++ N  +   +V  C+    L +GK +H +VIK G +++
Sbjct: 210 YVQNECAEEGLMLFNRMREGFLDGNVFTVGSLVTACTKLGCLHQGKWVHGYVIKNG-IEI 268

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPV------DDVISWNSIVSIYADYDLIFDALE 299
           N ++A +L++ Y  CG + +A+  FD   V      DD++ W +++  Y        ALE
Sbjct: 269 NSYLATSLLNMYVKCGDIGDARSVFDEFSVSTCGGGDDLVFWTAMIVGYTQRGYPQAALE 328

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF   +  R  P+  +    L+  ++  N+  GK +H  V K G D  S+  +++L DMY
Sbjct: 329 LFTDKKWYRILPNSVTLASLLSACAQLENIVMGKLLHVLVVKYGLDDTSL--RNSLVDMY 386

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC +I  +  VF +   + +   NS+++    SG+  +A+++F  M  E    D VT+ 
Sbjct: 387 AKCGLIPDAHYVFATTVDKDVVSWNSVISGYAQSGSAYEALDLFNRMRMESFLPDAVTVV 446

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
             L A +   +  +G    LH  A+K G   S+I V  +L++ Y++CG    +  VF+ +
Sbjct: 447 GVLSACASVGAHQIGLS--LHGFALKYGLVSSSIYVGTALLNFYAKCGDATSARMVFDGM 504

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538
              N V + +++ G    G G  +L +   M++  L+P++V F  +LA C+HSGMV+EG 
Sbjct: 505 GEKNAVTWAAMIGGCGMQGDGVGSLALFRDMLKEELVPNEVVFTTLLAACSHSGMVEEGL 564

Query: 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV 598
           ++F+ M          +HY+CM+D+L RAG L +A + + + P      ++ + L  C +
Sbjct: 565 MIFDFMCKELNFVPSMKHYACMVDLLARAGNLQEALDFIDKMPVQPGVGVFGAFLHGCGL 624

Query: 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHS 658
           H N   G      ++EL P     Y  +SN Y+  G + +  ++RE    R L +  G S
Sbjct: 625 HSNFDFGEVAIRRMLELHPDQACYYVLISNLYASDGRWGMVKEVREMIKQRGLNKVPGVS 684

Query: 659 LIEVN 663
           L+E++
Sbjct: 685 LVEMD 689


>gi|15231917|ref|NP_188091.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274207|sp|Q9LUC2.1|PP231_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g14730
 gi|9294394|dbj|BAB02404.1| unnamed protein product [Arabidopsis thaliana]
 gi|332642039|gb|AEE75560.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 653

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 186/584 (31%), Positives = 298/584 (51%), Gaps = 20/584 (3%)

Query: 91  PKQALYLYDEMVSHGIKESASTFS--------SVLSVCSNAGFYTEGIQIHCRVLSLGF- 141
           P  AL      VS  I+E+   +         + L  C+    Y  G QIH  ++  GF 
Sbjct: 33  PSSALASLYSTVSGQIEENPKRYEHHNVATCIATLQRCAQRKDYVSGQQIHGFMVRKGFL 92

Query: 142 GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201
             +   G+ LV++Y + G   RA+ +F    ER++  +N ++  F     P + +  Y +
Sbjct: 93  DDSPRAGTSLVNMYAKCGLMRRAVLVFGG-SERDVFGYNALISGFVVNGSPLDAMETYRE 151

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M+A G+ P+  +F  +++G S  M L + K++H    KLG+ D + +V + LV  YS   
Sbjct: 152 MRANGILPDKYTFPSLLKG-SDAMELSDVKKVHGLAFKLGF-DSDCYVGSGLVTSYSKFM 209

Query: 262 SLIEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320
           S+ +A+K FD +P  DD + WN++V+ Y+      DAL +F +M+      S  +    L
Sbjct: 210 SVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMREEGVGVSRHTITSVL 269

Query: 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL 380
           +  + +G++  G+ IHG   K G     + V +AL DMYGK   +E + ++FE+   R L
Sbjct: 270 SAFTVSGDIDNGRSIHGLAVKTG-SGSDIVVSNALIDMYGKSKWLEEANSIFEAMDERDL 328

Query: 381 ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLH 440
              NS++    + G+    + +F  M+  GI  D VTL+T L      AS   G  R +H
Sbjct: 329 FTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGRLASLRQG--REIH 386

Query: 441 CCAIKSGF----ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
              I SG      SN  +  SLMD Y +CG +  +  VF+ +   +   +  ++NGY   
Sbjct: 387 GYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQ 446

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
             G  ALDM   M + G+ PD++TF+ +L  C+HSG + EG+     M++VY I     H
Sbjct: 447 SCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQMETVYNILPTSDH 506

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           Y+C+IDMLGRA  L++A EL    P   + ++W S+L SCR+HGN+ +       L ELE
Sbjct: 507 YACVIDMLGRADKLEEAYELAISKPICDNPVVWRSILSSCRLHGNKDLALVAGKRLHELE 566

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           P     Y  +SN Y E G++E  + +R+    + + +  G S I
Sbjct: 567 PEHCGGYVLMSNVYVEAGKYEEVLDVRDAMRQQNVKKTPGCSWI 610



 Score =  150 bits (379), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 119/427 (27%), Positives = 206/427 (48%), Gaps = 14/427 (3%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           RD+  YN LISG      P  A+  Y EM ++GI     TF S+L   S+A   ++  ++
Sbjct: 124 RDVFGYNALISGFVVNGSPLDAMETYREMRANGILPDKYTFPSLLK-GSDAMELSDVKKV 182

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT-WNLMLRAFCELSR 191
           H     LGF  + Y+GS LV  Y +      A  +FDELP+R+ +  WN ++  + ++ R
Sbjct: 183 HGLAFKLGFDSDCYVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFR 242

Query: 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
            ++ L +++KM+ EGV  +  +   ++   ++   +D G+ +H   +K G    +I V+N
Sbjct: 243 FEDALLVFSKMREEGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTG-SGSDIVVSN 301

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY---ADYDLIFDALELFFRMQLCR 308
           AL+D Y     L EA   F+ +   D+ +WNS++ ++    D+D     L LF RM    
Sbjct: 302 ALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDHD---GTLALFERMLCSG 358

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF---DHGSVHVQSALTDMYGKCNVI 365
            RP I +    L    R  ++  G++IHGY+   G       +  + ++L DMY KC  +
Sbjct: 359 IRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDL 418

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             +  VF+S   +     N ++         + A++MF  M   G+  DE+T    L+A 
Sbjct: 419 RDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQAC 478

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVV 484
           S S   N G   L     + +   ++   +C ++D   R   +E ++++    P   N V
Sbjct: 479 SHSGFLNEGRNFLAQMETVYNILPTSDHYAC-VIDMLGRADKLEEAYELAISKPICDNPV 537

Query: 485 CFTSIMN 491
            + SI++
Sbjct: 538 VWRSILS 544



 Score =  125 bits (313), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 88/336 (26%), Positives = 163/336 (48%), Gaps = 4/336 (1%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARD-MVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           Y  +  +  + K   +  A+K+FDE+P RD  V +N L++G  +    + AL ++ +M  
Sbjct: 196 YVGSGLVTSYSKFMSVEDAQKVFDELPDRDDSVLWNALVNGYSQIFRFEDALLVFSKMRE 255

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G+  S  T +SVLS  + +G    G  IH   +  G G ++ + + L+D+Y +      
Sbjct: 256 EGVGVSRHTITSVLSAFTVSGDIDNGRSIHGLAVKTGSGSDIVVSNALIDMYGKSKWLEE 315

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F+ + ER+L TWN +L         D  L ++ +M   G+ P+ ++   ++  C  
Sbjct: 316 ANSIFEAMDERDLFTWNSVLCVHDYCGDHDGTLALFERMLCSGIRPDIVTLTTVLPTCGR 375

Query: 224 GMLLDEGKQLHSHVIKLGWVD---VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
              L +G+++H ++I  G ++    N F+ N+L+D Y  CG L +A+  FD + V D  S
Sbjct: 376 LASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYVKCGDLRDARMVFDSMRVKDSAS 435

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN +++ Y        AL++F  M     +P   +FV  L   S +G +  G+     + 
Sbjct: 436 WNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVGLLQACSHSGFLNEGRNFLAQME 495

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            +     +    + + DM G+ + +E +  +  S P
Sbjct: 496 TVYNILPTSDHYACVIDMLGRADKLEEAYELAISKP 531



 Score = 87.0 bits (214), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 68/256 (26%), Positives = 123/256 (48%), Gaps = 19/256 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI---SGCGKFRHPKQALYLYD 99
           +I  SN  ID + KS  L  A  +F+ M  RD+ T+N ++     CG        L L++
Sbjct: 296 DIVVSNALIDMYGKSKWLEEANSIFEAMDERDLFTWNSVLCVHDYCGDH---DGTLALFE 352

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF----GLNLYIGSPLVDLY 155
            M+  GI+    T ++VL  C       +G +IH  ++  G       N +I + L+D+Y
Sbjct: 353 RMLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMY 412

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           ++ G    A  +FD +  ++ A+WN+M+  +   S  +  L M++ M   GV+P+ ++F 
Sbjct: 413 VKCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFV 472

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN----ALVDFYSACGSLIEAKKSFD 271
            +++ CS    L+EG+   + +  +     NI   +     ++D       L EA +   
Sbjct: 473 GLLQACSHSGFLNEGRNFLAQMETV----YNILPTSDHYACVIDMLGRADKLEEAYELAI 528

Query: 272 FIPV-DDVISWNSIVS 286
             P+ D+ + W SI+S
Sbjct: 529 SKPICDNPVVWRSILS 544



 Score = 73.9 bits (180), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 45/134 (33%), Positives = 69/134 (51%), Gaps = 5/134 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTI-----DDFV 55
           ML + + P + T+TT+ PTC  +  L     +  Y   +  LN  SSN  I     D +V
Sbjct: 354 MLCSGIRPDIVTLTTVLPTCGRLASLRQGREIHGYMIVSGLLNRKSSNEFIHNSLMDMYV 413

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K G L  A+ +FD M  +D  ++N++I+G G     + AL ++  M   G+K    TF  
Sbjct: 414 KCGDLRDARMVFDSMRVKDSASWNIMINGYGVQSCGELALDMFSCMCRAGVKPDEITFVG 473

Query: 116 VLSVCSNAGFYTEG 129
           +L  CS++GF  EG
Sbjct: 474 LLQACSHSGFLNEG 487


>gi|147791119|emb|CAN74703.1| hypothetical protein VITISV_029224 [Vitis vinifera]
          Length = 677

 Score =  265 bits (676), Expect = 7e-68,   Method: Compositional matrix adjust.
 Identities = 177/611 (28%), Positives = 310/611 (50%), Gaps = 47/611 (7%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++AL LY ++ S  + E   TF  +L   +      +G  +H +++  GF L++Y  + L
Sbjct: 75  REALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATAL 134

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
            D+YM++     AL +F+E+P RNL + N+ +  F       E L  + ++      PN 
Sbjct: 135 ADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNS 194

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   ++  C+  + LD   Q+H   IKLG V+ +I+VA A+V  YS CG L+ AKK FD
Sbjct: 195 VTIASVLPACA-SVELD--GQVHCLAIKLG-VESDIYVATAVVTMYSNCGELVLAKKVFD 250

Query: 272 FIPVDDVISWNSIVS---IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            I   +V+S+N+ +S         L+FD  +    ++   + P+  + V  L+  S+   
Sbjct: 251 QILDKNVVSYNAFISGLLQNGAPHLVFDVFKDL--LESSGEVPNSVTLVSILSACSKLLY 308

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLM 387
           + FG+QIHG V K+  +  ++ V +AL DMY KC     +  +F E +  R+L   NS++
Sbjct: 309 IRFGRQIHGLVVKIEINFDTM-VGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMI 367

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS--------------------- 426
             ++ +G    AVE+F  +  EG+  D  T +T +   S                     
Sbjct: 368 AGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVI 427

Query: 427 ------------VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
                        SA + L S + +H   I++  +++  +S +L+D Y +CGH  L+ +V
Sbjct: 428 ASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRV 487

Query: 475 F--EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           F   +I   +   + ++++GY RNG  + A ++   M +  + P+  T + +L+ C+H+G
Sbjct: 488 FCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTG 547

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +  G  +F  M   YG++   +H+ CM+D+LGR+G L +A+EL+ + P      +++SL
Sbjct: 548 EIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASL 606

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L +CR H +  +G  +A  L ELEP D   +  +SN Y+  G +    ++RE    R L 
Sbjct: 607 LGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLK 666

Query: 653 RDIGHSLIEVN 663
           +  G S I V 
Sbjct: 667 KPPGCSSIGVT 677



 Score =  152 bits (384), Expect = 6e-34,   Method: Compositional matrix adjust.
 Identities = 119/520 (22%), Positives = 234/520 (45%), Gaps = 50/520 (9%)

Query: 25  PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           PL   +L     +    L+IY++    D ++K   L+ A K+F+EMP R++ + N+ ISG
Sbjct: 109 PLQGQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISG 168

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
             +  + ++AL  + ++     + ++ T +SVL  C  A    +G Q+HC  + LG   +
Sbjct: 169 FSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPAC--ASVELDG-QVHCLAIKLGVESD 225

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MK 203
           +Y+ + +V +Y   G  V A  +FD++ ++N+ ++N  +    +   P  V  ++   ++
Sbjct: 226 IYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLE 285

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS- 262
           + G  PN ++   ++  CS  + +  G+Q+H  V+K+  ++ +  V  ALVD YS CG  
Sbjct: 286 SSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIE-INFDTMVGTALVDMYSKCGCW 344

Query: 263 ------LIEAKKSFDFIPVDDVI-----------------------------SWNSIVSI 287
                  IE   S + +  + +I                             +WN+++S 
Sbjct: 345 HWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISG 404

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           ++    + +A + F +MQ      S++S    L   S    +  GK+IHG+  +   D  
Sbjct: 405 FSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTD 464

Query: 348 SVHVQSALTDMYGKCN---VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              + +AL DMY KC    +       F+  P       N++++    +G  + A E+F 
Sbjct: 465 EF-ISTALIDMYMKCGHSYLARRVFCQFQIKPDDP-AFWNAMISGYGRNGKYQSAFEIFN 522

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M +E +  +  TL + L   S +   + G  +L        G          ++D   R
Sbjct: 523 QMQEEKVQPNSATLVSILSVCSHTGEIDRG-WQLFKMMNRDYGLNPTSEHFGCMVDLLGR 581

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNG---YSRNGMGRE 501
            G ++ + ++  ++P  +V  F S++     +S + +G E
Sbjct: 582 SGRLKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEE 621


>gi|222636858|gb|EEE66990.1| hypothetical protein OsJ_23896 [Oryza sativa Japonica Group]
          Length = 659

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 166/477 (34%), Positives = 252/477 (52%), Gaps = 34/477 (7%)

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           Y +M   GV P+  ++  ++R C+    L  G+ +H H    G +D N+F  NAL+  Y+
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAG-MDGNLFFQNALMSMYA 196

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS--IRSF 316
            CG L  A+K FD +   DV+SWNS++S YA      +A+ELF RM+     P   IR  
Sbjct: 197 KCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGLIREM 256

Query: 317 VEF------------LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           V              LN  SR G +  GK+IHG   ++  D     V +AL  MY +C  
Sbjct: 257 VRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVE-SVSNALITMYARCKD 315

Query: 365 IESSVAVFESAPGRSLEC-----CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
           +E +  +F     R LEC      N++++S   S   ++A  +F  M+  G+  + VT+ 
Sbjct: 316 MECARMLF-----RMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVKPNYVTVV 370

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           T L     +  ANL   + LH   +K GF+    +  SL+D YS+ G + ++  VF+ + 
Sbjct: 371 TYLAL--CARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQNVFDTMD 428

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +++ +TS++ GY   G G  AL + E MI  G+ PD +  + VL+ C+HSG+V EG+ 
Sbjct: 429 DCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGEE 488

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +FN M   YGI    +HYSCMID+  RAG+L+KAEE+L  TP      MW++L+ +C   
Sbjct: 489 LFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALVGACHDR 548

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           GN  IG R A  L+E+   +   Y  ++N Y+  G ++      E A  RKL RD+G
Sbjct: 549 GNIEIGERAARKLLEMRTENAGHYVLIANMYAAAGCWD------ELATVRKLMRDLG 599



 Score =  153 bits (387), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 107/400 (26%), Positives = 190/400 (47%), Gaps = 21/400 (5%)

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           Y EM  +G+     T+ SVL  C+ A     G  +H      G   NL+  + L+ +Y +
Sbjct: 138 YQEMGKNGVLPDVFTYPSVLRACAEARELVLGRAVHMHAAGAGMDGNLFFQNALMSMYAK 197

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A  +FD + +R++ +WN M+ ++  + +  E + ++ +M+ EG EP GL    M
Sbjct: 198 CGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMRDEGTEPVGL-IREM 256

Query: 218 VRG---------------CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
           VRG               CS    L  GK++H   +++    V   V+NAL+  Y+ C  
Sbjct: 257 VRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVE-SVSNALITMYARCKD 315

Query: 263 LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLN 321
           +  A+  F  +    V++WN+++S +A  D   +A  + FR  +CR  +P+  + V +L 
Sbjct: 316 MECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSI-FREMICRGVKPNYVTVVTYLA 374

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
             +R  N+  G+++HG++ K GF  G   + ++L DMY K   +  +  VF++     + 
Sbjct: 375 LCARVANLQHGQELHGHIVKHGFK-GYRLLWNSLIDMYSKSGRLSVAQNVFDTMDDCDMI 433

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
              S++      G    A+ +F  M+D GI  D + + T L A S S     G   L + 
Sbjct: 434 SYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGLVLEGE-ELFNK 492

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
             I  G +  +     ++D Y+R G +E + ++ +  P P
Sbjct: 493 MVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFP 532



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 157/353 (44%), Gaps = 25/353 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY---- 98
           N++  N  +  + K G L SA+K+FD M  RD+V++N +IS         +A+ L+    
Sbjct: 184 NLFFQNALMSMYAKCGDLASARKVFDGMVQRDVVSWNSMISSYAAVGQWAEAMELFRRMR 243

Query: 99  ----------DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
                      EMV  G +    T    L+ CS  G+   G +IH   + +       + 
Sbjct: 244 DEGTEPVGLIREMVRGGAEVDYVTLVIGLNACSRVGWLRLGKEIHGLAVRMCCDQVESVS 303

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + L+ +Y R      A  LF  L    + TWN ML +F      +E   ++ +M   GV+
Sbjct: 304 NALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGVK 363

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           PN ++    +  C+    L  G++LH H++K G+    +   N+L+D YS  G L  A+ 
Sbjct: 364 PNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLL-WNSLIDMYSKSGRLSVAQN 422

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            FD +   D+IS+ S+++ Y        AL LF +M     +P     V  L+  S +G 
Sbjct: 423 VFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGL 482

Query: 329 V-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           V      F K +  Y  K   +H      S + D+Y +  ++E +  + +  P
Sbjct: 483 VLEGEELFNKMVISYGIKPQMEH-----YSCMIDLYARAGLLEKAEEMLDHTP 530



 Score = 79.3 bits (194), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 51/245 (20%), Positives = 118/245 (48%), Gaps = 1/245 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           SN  I  + +   +  A+ LF  +    +VT+N ++S        ++A  ++ EM+  G+
Sbjct: 303 SNALITMYARCKDMECARMLFRMLECPGVVTWNTMLSSFALSDCAEEASSIFREMICRGV 362

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K +  T  + L++C+       G ++H  ++  GF     + + L+D+Y + G    A +
Sbjct: 363 KPNYVTVVTYLALCARVANLQHGQELHGHIVKHGFKGYRLLWNSLIDMYSKSGRLSVAQN 422

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD + + ++ ++  M+  +    +    LR++ +M   G++P+ +    ++  CS   L
Sbjct: 423 VFDTMDDCDMISYTSMIAGYGMQGKGTVALRLFEQMIDSGIKPDHIIMVTVLSACSHSGL 482

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIV 285
           + EG++L + ++    +   +   + ++D Y+  G L +A++  D  P     + W ++V
Sbjct: 483 VLEGEELFNKMVISYGIKPQMEHYSCMIDLYARAGLLEKAEEMLDHTPFPPTSTMWAALV 542

Query: 286 SIYAD 290
               D
Sbjct: 543 GACHD 547


>gi|302810635|ref|XP_002987008.1| hypothetical protein SELMODRAFT_182822 [Selaginella moellendorffii]
 gi|300145173|gb|EFJ11851.1| hypothetical protein SELMODRAFT_182822 [Selaginella moellendorffii]
          Length = 694

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 182/645 (28%), Positives = 326/645 (50%), Gaps = 28/645 (4%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-------QPNPQLNIYSSNRTIDDFVKSGHLNSAK 64
           T+TTL   C+S+  L    ++ S         Q   + ++   N  ++ + K   L  A 
Sbjct: 44  TLTTLLGACSSLEDLQQGKMIHSLIVELGYGEQDGEEQDLMVGNSLVNMYAKCRSLADAI 103

Query: 65  KLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124
            +FD M  R + ++ ++++   +    ++A+  Y +M   G+  +A TF ++L+ CS+ G
Sbjct: 104 AIFDRMKNRSVFSWTIMVTAFAQNGQLQRAIQCYRQMCCDGVDPNAVTFVALLAACSSGG 163

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G +I  RV + G   +L +GS +V+ Y + G    A + FD +P +N  TWN M+ 
Sbjct: 164 ELAAGRKIAARVEASGLDSDLIVGSAIVNFYGKCGRLDEAREAFDRMPAKNNVTWNGMIA 223

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI-KLGWV 243
           A+ +     + + ++  M+ EGV P+ ++   ++  CS    L+ GK++HS VI +   +
Sbjct: 224 AYVQSGAATQAMDLFATMEDEGVVPDAMAVSSILGACSG---LESGKRIHSAVIDRRQEL 280

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA---DYDLIFDALEL 300
             +  V NALV  Y+ CGSL +A+  F  IP  + +SW +I++ +A   + D I  A +L
Sbjct: 281 QSDRAVCNALVHMYARCGSLDDARLVFLAIPSKNTVSWTTIIAAFAQQENRDDIEAAFQL 340

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASR--TGNVYFGKQIHGYVTKLGFDH--GSVHVQSALT 356
           F  M L    PS  +    L   S+   G +  G+ +H  +   G      SV V ++L 
Sbjct: 341 FREMDLDGVAPSEVTIFYALETCSKMDRGGLASGRALHTAMDTAGRVELLSSVEVLNSLL 400

Query: 357 DMYGKC-NVIESSVAVFESAPGRSLECCN--SLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           DMY  C ++I++    F+   G++++  +  +++ + +  G    A+ +   M  EG+  
Sbjct: 401 DMYASCGSLIDAEAIFFDHLLGKNVDVVSWTNMIAAYVQHGQSSSALLLAKKMDLEGVKS 460

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           DE+ +ST L A +   + +LG  R LH  A + G+ SN  V  +L+  Y   G ++ + +
Sbjct: 461 DEIAMSTILGACTAHQATSLG--RELHRRARELGYASNTIVGNALVFMYGSWGRVDDAAR 518

Query: 474 VFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
           VF+++    SPN   FT+++ GY+R G   +AL +   M   G+ P   TF  +   C+H
Sbjct: 519 VFQELKNANSPNSNTFTAMIAGYARQGRTLQALSLYNEMNLHGVEPRDATFTSIFQACSH 578

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
           +G + +    F  +    G++   +H+ C++D+LGR+G + +AEEL+   P   D + W 
Sbjct: 579 AGFLAKALEHFVFIYDFQGLEPTAEHFGCVVDLLGRSGFVREAEELVLAMPYEPDIVAWR 638

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAV-YSQVSNFYSEIG 634
           SLL SC    ++   RR A   + L+P   +  Y  +SN    +G
Sbjct: 639 SLLASCG-GSDQGASRRAAEEAVHLQPSGCSSHYVLLSNLVKTVG 682



 Score =  186 bits (471), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 133/526 (25%), Positives = 254/526 (48%), Gaps = 27/526 (5%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           +++ ++ ++IS   +  H   AL L+  M   G +    T +++L  CS+     +G  I
Sbjct: 5   KNVFSWTIIISAYVRADHGSDALQLFRTMNQEGDRADEVTLTTLLGACSSLEDLQQGKMI 64

Query: 133 HCRVLSLGFG------LNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           H  ++ LG+G       +L +G+ LV++Y +      A+ +FD +  R++ +W +M+ AF
Sbjct: 65  HSLIVELGYGEQDGEEQDLMVGNSLVNMYAKCRSLADAIAIFDRMKNRSVFSWTIMVTAF 124

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +  +    ++ Y +M  +GV+PN ++F  ++  CS G  L  G+++ + V   G +D +
Sbjct: 125 AQNGQLQRAIQCYRQMCCDGVDPNAVTFVALLAACSSGGELAAGRKIAARVEASG-LDSD 183

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + V +A+V+FY  CG L EA+++FD +P  + ++WN +++ Y        A++LF  M+ 
Sbjct: 184 LIVGSAIVNFYGKCGRLDEAREAFDRMPAKNNVTWNGMIAAYVQSGAATQAMDLFATMED 243

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV----TKLGFDHGSVHVQSALTDMYGKC 362
               P   +    L   S    +  GK+IH  V     +L  D     V +AL  MY +C
Sbjct: 244 EGVVPDAMAVSSILGACS---GLESGKRIHSAVIDRRQELQSDRA---VCNALVHMYARC 297

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGN---IKDAVEMFGFMVDEGIGLDEVTLS 419
             ++ +  VF + P ++     +++ +     N   I+ A ++F  M  +G+   EVT+ 
Sbjct: 298 GSLDDARLVFLAIPSKNTVSWTTIIAAFAQQENRDDIEAAFQLFREMDLDGVAPSEVTIF 357

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSG---FESNIAVSCSLMDAYSRCGH-IELSHQVF 475
             L+  S      L S R LH     +G     S++ V  SL+D Y+ CG  I+     F
Sbjct: 358 YALETCSKMDRGGLASGRALHTAMDTAGRVELLSSVEVLNSLLDMYASCGSLIDAEAIFF 417

Query: 476 EKIPSPN--VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533
           + +   N  VV +T+++  Y ++G    AL + + M   G+  D++    +L  C     
Sbjct: 418 DHLLGKNVDVVSWTNMIAAYVQHGQSSSALLLAKKMDLEGVKSDEIAMSTILGACTAHQA 477

Query: 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
              G+ +    + + G  ++    + ++ M G  G +D A  + Q+
Sbjct: 478 TSLGRELHRRAREL-GYASNTIVGNALVFMYGSWGRVDDAARVFQE 522



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 113/448 (25%), Positives = 217/448 (48%), Gaps = 30/448 (6%)

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           +N+ +W +++ A+       + L+++  M  EG   + ++   ++  CS    L +GK +
Sbjct: 5   KNVFSWTIIISAYVRADHGSDALQLFRTMNQEGDRADEVTLTTLLGACSSLEDLQQGKMI 64

Query: 234 HSHVIKLGW-----VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           HS +++LG+      + ++ V N+LV+ Y+ C SL +A   FD +    V SW  +V+ +
Sbjct: 65  HSLIVELGYGEQDGEEQDLMVGNSLVNMYAKCRSLADAIAIFDRMKNRSVFSWTIMVTAF 124

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           A    +  A++ + +M      P+  +FV  L   S  G +  G++I   V   G D   
Sbjct: 125 AQNGQLQRAIQCYRQMCCDGVDPNAVTFVALLAACSSGGELAAGRKIAARVEASGLDSDL 184

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           + V SA+ + YGKC  ++ +   F+  P ++    N ++ + + SG    A+++F  M D
Sbjct: 185 I-VGSAIVNFYGKCGRLDEAREAFDRMPAKNNVTWNGMIAAYVQSGAATQAMDLFATMED 243

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI--KSGFESNIAVSCSLMDAYSRCG 466
           EG+  D + +S+ L A S      L S + +H   I  +   +S+ AV  +L+  Y+RCG
Sbjct: 244 EGVVPDAMAVSSILGACS-----GLESGKRIHSAVIDRRQELQSDRAVCNALVHMYARCG 298

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-------RGLIPDKV 519
            ++ +  VF  IPS N V +T+I+  +++    +E  D +E   Q        G+ P +V
Sbjct: 299 SLDDARLVFLAIPSKNTVSWTTIIAAFAQ----QENRDDIEAAFQLFREMDLDGVAPSEV 354

Query: 520 TFLCVLAGCNH--SGMVKEGQLVFNSMKSVYGID--ADRQHYSCMIDMLGRAGILDKAEE 575
           T    L  C+    G +  G+ +  +M +   ++  +  +  + ++DM    G L  AE 
Sbjct: 355 TIFYALETCSKMDRGGLASGRALHTAMDTAGRVELLSSVEVLNSLLDMYASCGSLIDAEA 414

Query: 576 LLQQTPGGG--DCMMWSSLLRSCRVHGN 601
           +      G   D + W++++ +   HG 
Sbjct: 415 IFFDHLLGKNVDVVSWTNMIAAYVQHGQ 442


>gi|297604972|ref|NP_001056430.2| Os05g0581300 [Oryza sativa Japonica Group]
 gi|255676606|dbj|BAF18344.2| Os05g0581300 [Oryza sativa Japonica Group]
          Length = 704

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 169/627 (26%), Positives = 308/627 (49%), Gaps = 18/627 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +    +S  L  A +LFD MP RD V Y  L++G         A+ L+  + +     + 
Sbjct: 8   LKQLARSSRLADAHRLFDGMPRRDEVAYATLLAGHAAAGDFPGAMALFSRLRASSPPLAP 67

Query: 111 S---TFSSVLSVCS---NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           +     S V   C+   +A F      +H   +      ++++ + L D+Y + G    A
Sbjct: 68  ADPFVLSLVFKSCAAAADARFLPHAASLHAFAVRSSAVSSVFVATALADVYAKAGCLGLA 127

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           L +FDE+P +N+ +W  ++ +     R  E LR +++M+A GV  +  ++   +  C+  
Sbjct: 128 LKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMRASGVHCDSYAYAAALTACADA 187

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            LL  G+++H+   KLG +D   +VAN L   Y+ C  +  A  +   +   DV +W ++
Sbjct: 188 GLLSRGREVHAFCAKLG-LDSTPYVANTLATLYARCSDVDRALAAVSRMGTRDVAAWTTV 246

Query: 285 VSIYADYDLIFDALELFFRM----QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           +S Y       +A+E F RM          P+  ++   +   +    V  G+Q+H    
Sbjct: 247 ISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVIAACADIAWVCLGEQLHAQAA 306

Query: 341 KLGFDHGSVHVQSALTDMYGKC-NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
           + GF   +  V ++L  +Y +    + ++ AVF  +  + +   +++++     G  +DA
Sbjct: 307 RKGFA-CARSVANSLVTLYTRAAGCLSAADAVFRESVVKDVVSWSAIISGYAQEGLAEDA 365

Query: 400 VEMFGFMVDEG--IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
             +F  M         +E TL++ L   + +AS + G  R LH  A+ +G E +  +  +
Sbjct: 366 FALFREMRHHSGCPRPNEFTLASLLSVCATAASLDAG--RQLHTLAVAAGLEHHAMIRSA 423

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y + G +  +  VF      +VV +T+++ GY+ +G  ++AL++ + M   GL PD
Sbjct: 424 LIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHGHSKKALELFQEMCHVGLKPD 483

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            VTF+ VL  C H+G V+ G    N M  +YG+   ++HY C++D+LGRAG +++AEEL+
Sbjct: 484 HVTFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHYGCVVDLLGRAGRINEAEELI 543

Query: 578 QQTPGGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
            +      D ++W+SLLR+C   G E  G++ A   ME EP     +  ++N Y+  G++
Sbjct: 544 GKIAANERDGVVWTSLLRACAARGEEETGKKAAERAMEAEPWGAGAHVAMANLYASKGQW 603

Query: 637 EVSMQIRETALARKLTRDIGHSLIEVN 663
             + Q R     + + +  G S I V 
Sbjct: 604 HEAAQERHMMKQKGVVKGAGWSSITVG 630



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/465 (26%), Positives = 217/465 (46%), Gaps = 14/465 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ +    D + K+G L  A K+FDEMP +++V++  L++   +     +AL  + EM 
Sbjct: 107 SVFVATALADVYAKAGCLGLALKVFDEMPHKNVVSWTTLVASLTRAGRRHEALRRFSEMR 166

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G+   +  +++ L+ C++AG  + G ++H     LG     Y+ + L  LY R     
Sbjct: 167 ASGVHCDSYAYAAALTACADAGLLSRGREVHAFCAKLGLDSTPYVANTLATLYARCSDVD 226

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE----GVEPNGLSFCYMV 218
           RAL     +  R++A W  ++ A+ +  R  E +  + +M  E       PN  ++  ++
Sbjct: 227 RALAAVSRMGTRDVAAWTTVISAYVQTGRAKEAIEAFVRMLREESSVAASPNEYTYAAVI 286

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS-ACGSLIEAKKSFDFIPVDD 277
             C+    +  G+QLH+   + G+      VAN+LV  Y+ A G L  A   F    V D
Sbjct: 287 AACADIAWVCLGEQLHAQAARKGFACAR-SVANSLVTLYTRAAGCLSAADAVFRESVVKD 345

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQL---CRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
           V+SW++I+S YA   L  DA  LF  M+    C  RP+  +    L+  +   ++  G+Q
Sbjct: 346 VVSWSAIISGYAQEGLAEDAFALFREMRHHSGC-PRPNEFTLASLLSVCATAASLDAGRQ 404

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H      G +H ++ ++SAL DMYGK   +  +  VF       +    +++      G
Sbjct: 405 LHTLAVAAGLEHHAM-IRSALIDMYGKSGSMLDADIVFSHRVKDDVVSWTAMIVGYAEHG 463

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
           + K A+E+F  M   G+  D VT    L A   +    LG   L     I   + +    
Sbjct: 464 HSKKALELFQEMCHVGLKPDHVTFIGVLNACCHAGEVELGLRYLNEMNQIYGLYPAKEHY 523

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNG 497
            C ++D   R G I  + ++  KI +   + V +TS++   +  G
Sbjct: 524 GC-VVDLLGRAGRINEAEELIGKIAANERDGVVWTSLLRACAARG 567


>gi|225439588|ref|XP_002265522.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g08820-like [Vitis vinifera]
          Length = 686

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 146/497 (29%), Positives = 275/497 (55%), Gaps = 4/497 (0%)

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LF ++ + N+  WN M+R        D+ +  Y  M++EG  PN  +F ++++ C+  + 
Sbjct: 68  LFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKACARLLD 127

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           L  G ++H+ V+K G+ D ++FV  +LV  Y+ CG L +A K FD IP  +V+SW +I+S
Sbjct: 128 LQLGVKIHTLVVKGGF-DCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWTAIIS 186

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y       +A+++F R+      P   + V  L+  ++ G++  G+ IH  + ++G   
Sbjct: 187 GYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVR 246

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
            +V V ++L DMY KC  +E + +VF+  P + +    +++     +G  K+A+++F  M
Sbjct: 247 -NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQM 305

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             E +  D  T+   L A +   +  LG    +     ++ F  N  +  +L+D Y++CG
Sbjct: 306 QRENVKPDCYTVVGVLSACARLGALELGE--WVSGLVDRNEFLYNPVLGTALIDLYAKCG 363

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            +  + +VF+ +   + V + +I++G + NG  + +  +   + + G+ PD  TF+ +L 
Sbjct: 364 SMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLC 423

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
           GC H+G+V EG+  FNSM   + +    +HY CM+D+LGRAG+LD+A +L++  P   + 
Sbjct: 424 GCTHAGLVDEGRRYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANA 483

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
           ++W +LL +CR+H +  +       L+ELEP +   Y  +SN YS   +++ + ++R + 
Sbjct: 484 IVWGALLGACRIHRDTQLAELALKQLIELEPWNSGNYVLLSNIYSANLKWDEAAKVRLSM 543

Query: 647 LARKLTRDIGHSLIEVN 663
             +++ +  G S IEV+
Sbjct: 544 NEKRIQKPPGCSWIEVD 560



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 105/431 (24%), Positives = 212/431 (49%), Gaps = 4/431 (0%)

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           N  + LF ++   ++  +N +I G         A+  Y  M S G   +  TF  VL  C
Sbjct: 63  NYTRFLFHQIKQPNIFLWNTMIRGLVSNDCFDDAIEFYGLMRSEGFLPNNFTFPFVLKAC 122

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           +       G++IH  V+  GF  ++++ + LV LY + G    A  +FD++P++N+ +W 
Sbjct: 123 ARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGYLEDAHKVFDDIPDKNVVSWT 182

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            ++  +  + +  E + M+ ++    + P+  +   ++  C+    L+ G+ +H  ++++
Sbjct: 183 AIISGYIGVGKFREAIDMFRRLLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEM 242

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
           G V  N+FV  +LVD Y+ CG++ +A+  FD +P  D++SW +++  YA   L  +A++L
Sbjct: 243 GMVR-NVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDL 301

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
           F +MQ    +P   + V  L+  +R G +  G+ + G V +  F +  V + +AL D+Y 
Sbjct: 302 FLQMQRENVKPDCYTVVGVLSACARLGALELGEWVSGLVDRNEFLYNPV-LGTALIDLYA 360

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
           KC  +  +  VF+    +     N++++ L  +G +K +  +FG +   GI  D  T   
Sbjct: 361 KCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIG 420

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP- 479
            L   + +   + G  R  +          +I     ++D   R G ++ +HQ+   +P 
Sbjct: 421 LLCGCTHAGLVDEGR-RYFNSMYRFFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPM 479

Query: 480 SPNVVCFTSIM 490
             N + + +++
Sbjct: 480 EANAIVWGALL 490



 Score =  135 bits (340), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/385 (23%), Positives = 186/385 (48%), Gaps = 18/385 (4%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S   LP   T   +   C  ++ L   + + +   +     +++     +  + K G+
Sbjct: 103 MRSEGFLPNNFTFPFVLKACARLLDLQLGVKIHTLVVKGGFDCDVFVKTSLVCLYAKCGY 162

Query: 60  LNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           L  A K+FD++P +++V++  +ISG    GKFR   +A+ ++  ++   +   + T   V
Sbjct: 163 LEDAHKVFDDIPDKNVVSWTAIISGYIGVGKFR---EAIDMFRRLLEMNLAPDSFTIVRV 219

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           LS C+  G    G  IH  ++ +G   N+++G+ LVD+Y + G   +A  +FD +PE+++
Sbjct: 220 LSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGNMEKARSVFDGMPEKDI 279

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +W  M++ +     P E + ++ +M+ E V+P+  +   ++  C+    L+ G+ +   
Sbjct: 280 VSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSACARLGALELGEWVS-- 337

Query: 237 VIKLGWVDVNIFVAN-----ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
               G VD N F+ N     AL+D Y+ CGS+  A + F  +   D + WN+I+S  A  
Sbjct: 338 ----GLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVWNAIISGLAMN 393

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
             +  +  LF +++    +P   +F+  L   +  G V  G++    + +      S+  
Sbjct: 394 GYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYRFFSLTPSIEH 453

Query: 352 QSALTDMYGKCNVIESSVAVFESAP 376
              + D+ G+  +++ +  +  + P
Sbjct: 454 YGCMVDLLGRAGLLDEAHQLIRNMP 478



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 75/310 (24%), Positives = 145/310 (46%), Gaps = 5/310 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGH 59
           +L   L P   TI  +   CT +  L+S   +         + N++     +D + K G+
Sbjct: 204 LLEMNLAPDSFTIVRVLSACTQLGDLNSGEWIHKCIMEMGMVRNVFVGTSLVDMYAKCGN 263

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A+ +FD MP +D+V++  +I G      PK+A+ L+ +M    +K    T   VLS 
Sbjct: 264 MEKARSVFDGMPEKDIVSWGAMIQGYALNGLPKEAIDLFLQMQRENVKPDCYTVVGVLSA 323

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+  G    G  +   V    F  N  +G+ L+DLY + G   RA ++F  + E++   W
Sbjct: 324 CARLGALELGEWVSGLVDRNEFLYNPVLGTALIDLYAKCGSMSRAWEVFKGMKEKDRVVW 383

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ++              ++ +++  G++P+G +F  ++ GC+   L+DEG++  + + +
Sbjct: 384 NAIISGLAMNGYVKISFGLFGQVEKLGIKPDGNTFIGLLCGCTHAGLVDEGRRYFNSMYR 443

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---IYADYDLIF 295
              +  +I     +VD     G L EA +    +P++ + I W +++    I+ D  L  
Sbjct: 444 FFSLTPSIEHYGCMVDLLGRAGLLDEAHQLIRNMPMEANAIVWGALLGACRIHRDTQLAE 503

Query: 296 DALELFFRMQ 305
            AL+    ++
Sbjct: 504 LALKQLIELE 513


>gi|225424928|ref|XP_002270695.1| PREDICTED: pentatricopeptide repeat-containing protein At2g02750
           [Vitis vinifera]
 gi|296086418|emb|CBI32007.3| unnamed protein product [Vitis vinifera]
          Length = 617

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 177/611 (28%), Positives = 310/611 (50%), Gaps = 47/611 (7%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++AL LY ++ S  + E   TF  +L   +      +G  +H +++  GF L++Y  + L
Sbjct: 15  REALSLYSKLHSSSVLEHKFTFPFLLKASAKLNSPLQGQILHTQLIKTGFHLDIYAATAL 74

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG 211
            D+YM++     AL +F+E+P RNL + N+ +  F       E L  + ++      PN 
Sbjct: 75  ADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISGFSRNGYFREALGAFKQVGLGNFRPNS 134

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   ++  C+  + LD   Q+H   IKLG V+ +I+VA A+V  YS CG L+ AKK FD
Sbjct: 135 VTIASVLPACA-SVELD--GQVHCLAIKLG-VESDIYVATAVVTMYSNCGELVLAKKVFD 190

Query: 272 FIPVDDVISWNSIVS---IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            I   +V+S+N+ +S         L+FD  +    ++   + P+  + V  L+  S+   
Sbjct: 191 QILDKNVVSYNAFISGLLQNGAPHLVFDVFKDL--LESSGEVPNSVTLVSILSACSKLLY 248

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF-ESAPGRSLECCNSLM 387
           + FG+QIHG V K+  +  ++ V +AL DMY KC     +  +F E +  R+L   NS++
Sbjct: 249 IRFGRQIHGLVVKIEINFDTM-VGTALVDMYSKCGCWHWAYGIFIELSGSRNLVTWNSMI 307

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS--------------------- 426
             ++ +G    AVE+F  +  EG+  D  T +T +   S                     
Sbjct: 308 AGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISGFSQQGQVVEAFKFFHKMQSAGVI 367

Query: 427 ------------VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
                        SA + L S + +H   I++  +++  +S +L+D Y +CGH  L+ +V
Sbjct: 368 ASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTDEFISTALIDMYMKCGHSYLARRV 427

Query: 475 F--EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           F   +I   +   + ++++GY RNG  + A ++   M +  + P+  T + +L+ C+H+G
Sbjct: 428 FCQFQIKPDDPAFWNAMISGYGRNGKYQSAFEIFNQMQEEKVQPNSATLVSILSVCSHTG 487

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +  G  +F  M   YG++   +H+ CM+D+LGR+G L +A+EL+ + P      +++SL
Sbjct: 488 EIDRGWQLFKMMNRDYGLNPTSEHFGCMVDLLGRSGRLKEAQELIHEMP-EASVSVFASL 546

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L +CR H +  +G  +A  L ELEP D   +  +SN Y+  G +    ++RE    R L 
Sbjct: 547 LGACRHHSDSALGEEMAKKLSELEPQDPTPFVILSNIYAVQGRWGDVERVREMMNDRGLK 606

Query: 653 RDIGHSLIEVN 663
           +  G S I V 
Sbjct: 607 KPPGCSSIGVT 617



 Score =  152 bits (383), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 119/520 (22%), Positives = 234/520 (45%), Gaps = 50/520 (9%)

Query: 25  PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG 84
           PL   +L     +    L+IY++    D ++K   L+ A K+F+EMP R++ + N+ ISG
Sbjct: 49  PLQGQILHTQLIKTGFHLDIYAATALADMYMKLHLLSYALKVFEEMPHRNLPSLNVTISG 108

Query: 85  CGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN 144
             +  + ++AL  + ++     + ++ T +SVL  C  A    +G Q+HC  + LG   +
Sbjct: 109 FSRNGYFREALGAFKQVGLGNFRPNSVTIASVLPAC--ASVELDG-QVHCLAIKLGVESD 165

Query: 145 LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK-MK 203
           +Y+ + +V +Y   G  V A  +FD++ ++N+ ++N  +    +   P  V  ++   ++
Sbjct: 166 IYVATAVVTMYSNCGELVLAKKVFDQILDKNVVSYNAFISGLLQNGAPHLVFDVFKDLLE 225

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS- 262
           + G  PN ++   ++  CS  + +  G+Q+H  V+K+  ++ +  V  ALVD YS CG  
Sbjct: 226 SSGEVPNSVTLVSILSACSKLLYIRFGRQIHGLVVKIE-INFDTMVGTALVDMYSKCGCW 284

Query: 263 ------LIEAKKSFDFIPVDDVI-----------------------------SWNSIVSI 287
                  IE   S + +  + +I                             +WN+++S 
Sbjct: 285 HWAYGIFIELSGSRNLVTWNSMIAGMMLNGQSDIAVELFEQLEPEGLEPDSATWNTMISG 344

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           ++    + +A + F +MQ      S++S    L   S    +  GK+IHG+  +   D  
Sbjct: 345 FSQQGQVVEAFKFFHKMQSAGVIASLKSITSLLRACSALSALQSGKEIHGHTIRTNIDTD 404

Query: 348 SVHVQSALTDMYGKCN---VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              + +AL DMY KC    +       F+  P       N++++    +G  + A E+F 
Sbjct: 405 EF-ISTALIDMYMKCGHSYLARRVFCQFQIKPDDP-AFWNAMISGYGRNGKYQSAFEIFN 462

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M +E +  +  TL + L   S +   + G  +L        G          ++D   R
Sbjct: 463 QMQEEKVQPNSATLVSILSVCSHTGEIDRG-WQLFKMMNRDYGLNPTSEHFGCMVDLLGR 521

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNG---YSRNGMGRE 501
            G ++ + ++  ++P  +V  F S++     +S + +G E
Sbjct: 522 SGRLKEAQELIHEMPEASVSVFASLLGACRHHSDSALGEE 561


>gi|224127716|ref|XP_002320145.1| predicted protein [Populus trichocarpa]
 gi|222860918|gb|EEE98460.1| predicted protein [Populus trichocarpa]
          Length = 548

 Score =  265 bits (676), Expect = 8e-68,   Method: Compositional matrix adjust.
 Identities = 170/545 (31%), Positives = 293/545 (53%), Gaps = 22/545 (4%)

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
           GF  EG Q+H  V+ LGF   L + + ++++Y++      A  LFDE+  RN+ TWN ++
Sbjct: 2   GFLREGKQVHSHVIKLGFCNVLSLQNQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVI 61

Query: 184 RAFCELSRPDEVLRMY------NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
               +    D    +Y       KM  + V  + ++   ++R C     ++ G++LH  +
Sbjct: 62  CGLVDCRGSDYESSVYMGFCYFRKMLLDKVGFDAITLNGLLRACLELNDVEIGRELHCFI 121

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +KLG+  VN FV +ALVD Y  CG + EA+++FD +   D++ WN ++S YA   L  +A
Sbjct: 122 VKLGFA-VNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEA 180

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
              F  MQ         +F   LN     G+   G+QIHG   KL FD   V V S L D
Sbjct: 181 SGFFKLMQEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDL-DVLVASGLVD 239

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY K   I+ +   F+    R++   N+++      G+  +A+++   M  E +  DE+T
Sbjct: 240 MYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEIT 299

Query: 418 LSTTLKALSVSASANLGSCRLLHCCA--IKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           L++ ++    S S+ L SC ++   A  +K+GF + ++++ +L++AYS+ G I ++ Q F
Sbjct: 300 LASIIR----SCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGSIAMALQCF 355

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
             +  P++V +TS++  Y+ + + + ++D  E M+  G+ PD++ FL VL+ C+H+G+V 
Sbjct: 356 NTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVN 415

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG   F+ MK  Y I    +HY+C+ID+LGRAG+LD+A  +L     G       + + +
Sbjct: 416 EGLHYFSLMKD-YHILPGLEHYTCLIDLLGRAGLLDEAFNILNSMSIGYSSDTLGAFIGA 474

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD- 654
           C++HG+  + +  A  L E+EP     Y+ +S+ ++  G +       + A   KL RD 
Sbjct: 475 CKIHGDVKLAKWAAEKLFEMEPNKPVNYTLMSSVFASEGHW------HDVARIHKLMRDR 528

Query: 655 IGHSL 659
            GH +
Sbjct: 529 CGHGV 533



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 191/393 (48%), Gaps = 8/393 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHP--KQALYL----YDEM 101
           N+ ++ ++K    N A +LFDEM  R++VT+N +I G    R    + ++Y+    + +M
Sbjct: 27  NQILNVYIKCKDFNYAHRLFDEMHVRNVVTWNTVICGLVDCRGSDYESSVYMGFCYFRKM 86

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +   +   A T + +L  C        G ++HC ++ LGF +N ++ S LVDLY + G  
Sbjct: 87  LLDKVGFDAITLNGLLRACLELNDVEIGRELHCFIVKLGFAVNSFVNSALVDLYGKCGLV 146

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   FDE+  R+L  WN+ML  +      +E    +  M+ E    +G +F  M+  C
Sbjct: 147 KEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLMQEENFMTDGFTFSSMLNSC 206

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                 + G+Q+H   IKL + D+++ VA+ LVD Y+   ++ +A+K+FD +   +V+SW
Sbjct: 207 GTLGSCNLGRQIHGLSIKLSF-DLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSW 265

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++V  Y       +A++L   M     RP   +    +   S         Q++ YV K
Sbjct: 266 NTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLK 325

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF H  + + +AL + Y K   I  ++  F +     L    SL+ +       K++++
Sbjct: 326 NGF-HAFLSIANALINAYSKGGSIAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSID 384

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
            F  M+ +G+  D++     L A S +   N G
Sbjct: 385 TFEEMLADGVWPDQIVFLEVLSACSHAGLVNEG 417



 Score =  126 bits (317), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 91/363 (25%), Positives = 178/363 (49%), Gaps = 11/363 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +N + ++  +D + K G +  A++ FDE+  RD+V +N+++S        ++A   +  M
Sbjct: 128 VNSFVNSALVDLYGKCGLVKEARRAFDEVYCRDLVLWNVMLSCYAMNCLAEEASGFFKLM 187

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
                     TFSS+L+ C   G    G QIH   + L F L++ + S LVD+Y +    
Sbjct: 188 QEENFMTDGFTFSSMLNSCGTLGSCNLGRQIHGLSIKLSFDLDVLVASGLVDMYAKSENI 247

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A   FD +  RN+ +WN M+  +  L    E +++   M  E + P+ ++   ++R C
Sbjct: 248 DDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIGMFQEDLRPDEITLASIIRSC 307

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           S  +   E  Q++++V+K G+    + +ANAL++ YS  GS+  A + F+ +   D+++W
Sbjct: 308 SSALTSCEIMQVNAYVLKNGF-HAFLSIANALINAYSKGGSIAMALQCFNTVLEPDLVTW 366

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG----NVYFGKQIHG 337
            S++  YA + L  ++++ F  M      P    F+E L+  S  G     +++   +  
Sbjct: 367 TSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSACSHAGLVNEGLHYFSLMKD 426

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNI 396
           Y    G +H      + L D+ G+  +++ +  +  S + G S +   + + +    G++
Sbjct: 427 YHILPGLEH-----YTCLIDLLGRAGLLDEAFNILNSMSIGYSSDTLGAFIGACKIHGDV 481

Query: 397 KDA 399
           K A
Sbjct: 482 KLA 484



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 71/269 (26%), Positives = 132/269 (49%), Gaps = 5/269 (1%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            L++  ++  +D + KS +++ A+K FD M AR++V++N ++ G G+     +A+ L   
Sbjct: 228 DLDVLVASGLVDMYAKSENIDDARKAFDGMAARNVVSWNTMVVGYGRLGDGGEAMKLLIG 287

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M    ++    T +S++  CS+A    E +Q++  VL  GF   L I + L++ Y + G 
Sbjct: 288 MFQEDLRPDEITLASIIRSCSSALTSCEIMQVNAYVLKNGFHAFLSIANALINAYSKGGS 347

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL  F+ + E +L TW  ++ A+   S P   +  + +M A+GV P+ + F  ++  
Sbjct: 348 IAMALQCFNTVLEPDLVTWTSLIGAYAFHSLPKNSIDTFEEMLADGVWPDQIVFLEVLSA 407

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV----D 276
           CS   L++EG    S ++K   +   +     L+D     G L EA    + + +    D
Sbjct: 408 CSHAGLVNEGLHYFS-LMKDYHILPGLEHYTCLIDLLGRAGLLDEAFNILNSMSIGYSSD 466

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQ 305
            + ++     I+ D  L   A E  F M+
Sbjct: 467 TLGAFIGACKIHGDVKLAKWAAEKLFEME 495


>gi|356545843|ref|XP_003541343.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g68930-like [Glycine max]
          Length = 747

 Score =  265 bits (676), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 174/594 (29%), Positives = 297/594 (50%), Gaps = 67/594 (11%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           +IHC ++       +++ + LV  Y +      A  +FD++P+RNL +WN +L ++ +L+
Sbjct: 30  KIHCHIIKAFRNPEIFLLNNLVSAYAKFDRITYARRVFDQMPQRNLYSWNTLLSSYSKLA 89

Query: 191 RPDEVLRMYNKMKAEG-VEPNGLSFCYMVRG------------------------CSIGM 225
              E+ R+++ M     V  N L   Y  RG                         S  +
Sbjct: 90  CLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYNLMLYNGPFNLNRIALSTML 149

Query: 226 LLDE-------GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           +L         G Q+H HV+K G+    +FV + LVD YS  G +  A+++FD +P  +V
Sbjct: 150 ILASKQGCVHLGLQVHGHVVKFGFQSY-VFVGSPLVDMYSKTGLVFCARQAFDEMPEKNV 208

Query: 279 -------------------------------ISWNSIVSIYADYDLIFDALELFFRMQLC 307
                                          ISW ++++ +    L  +A++LF  M+L 
Sbjct: 209 VMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFTQNGLDREAIDLFREMRLE 268

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
                  +F   L        +  GKQ+H Y+ +  +   ++ V SAL DMY KC  I+S
Sbjct: 269 NLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDY-QDNIFVGSALVDMYCKCKSIKS 327

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  VF     +++    +++     +G  ++AV++F  M + GI  D+ TL + + + + 
Sbjct: 328 AETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCAN 387

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
            AS   G+    HC A+ SG  S I VS +L+  Y +CG IE SH++F ++   + V +T
Sbjct: 388 LASLEEGA--QFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWT 445

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           ++++GY++ G   E L + E M+  G  PDKVTF+ VL+ C+ +G+V++G  +F SM   
Sbjct: 446 ALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKE 505

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           + I     HY+CMID+  RAG L++A + + + P   D + W+SLL SCR H N  IG+ 
Sbjct: 506 HRIIPIEDHYTCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLSSCRFHRNMEIGKW 565

Query: 608 VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            A  L++LEP + A Y  +S+ Y+  G++E    +R+    + L ++ G S I+
Sbjct: 566 AAESLLKLEPHNTASYILLSSIYAAKGKWEEVANLRKGMRDKGLRKEPGCSWIK 619



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 135/513 (26%), Positives = 233/513 (45%), Gaps = 59/513 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ N+YS N  +  + K   L   +++F  MP RDMV++N LIS         Q++  Y+
Sbjct: 71  PQRNLYSWNTLLSSYSKLACLPEMERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAYN 130

Query: 100 EMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            M+ +G    +    S++L + S  G    G+Q+H  V+  GF   +++GSPLVD+Y + 
Sbjct: 131 LMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGFQSYVFVGSPLVDMYSKT 190

Query: 159 GPSVRALDLFDELPERNLA-------------------------------TWNLMLRAFC 187
           G    A   FDE+PE+N+                                +W  M+  F 
Sbjct: 191 GLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAGFT 250

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +     E + ++ +M+ E +E +  +F  ++  C   M L EGKQ+H+++I+  + D NI
Sbjct: 251 QNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEGKQVHAYIIRTDYQD-NI 309

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV +ALVD Y  C S+  A+  F  +   +V+SW +++  Y       +A+++F  MQ  
Sbjct: 310 FVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNN 369

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   +    ++  +   ++  G Q H      G     + V +AL  +YGKC  IE 
Sbjct: 370 GIEPDDFTLGSVISSCANLASLEEGAQFHCRALVSGLI-SFITVSNALVTLYGKCGSIED 428

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           S  +F            +L++     G   + + +F  M+  G   D+VT    L A S 
Sbjct: 429 SHRLFSEMSYVDEVSWTALVSGYAQFGKANETLRLFESMLAHGFKPDKVTFIGVLSACSR 488

Query: 428 SASANLGSCRLLHCCAIKSGFESNIA----------VSCSLMDAYSRCGHIELSHQVFEK 477
           +     G+            FES I            +C ++D +SR G +E + +   K
Sbjct: 489 AGLVQKGN----------QIFESMIKEHRIIPIEDHYTC-MIDLFSRAGRLEEARKFINK 537

Query: 478 IP-SPNVVCFTSIMNG--YSRN-GMGREALDML 506
           +P SP+ + + S+++   + RN  +G+ A + L
Sbjct: 538 MPFSPDAIGWASLLSSCRFHRNMEIGKWAAESL 570



 Score =  128 bits (322), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 105/444 (23%), Positives = 195/444 (43%), Gaps = 77/444 (17%)

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           +C +++ C       + K++H H+IK  + +  IF+ N LV  Y+    +  A++ FD +
Sbjct: 18  YCELLKHCR------DTKKIHCHIIK-AFRNPEIFLLNNLVSAYAKFDRITYARRVFDQM 70

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE--------------- 318
           P  ++ SWN+++S Y+    + + +E  F     R   S  S +                
Sbjct: 71  PQRNLYSWNTLLSSYSKLACLPE-MERVFHAMPTRDMVSWNSLISAYAGRGFLLQSVKAY 129

Query: 319 ------------------FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
                              L  AS+ G V+ G Q+HG+V K GF    V V S L DMY 
Sbjct: 130 NLMLYNGPFNLNRIALSTMLILASKQGCVHLGLQVHGHVVKFGF-QSYVFVGSPLVDMYS 188

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD---------------------- 398
           K  ++  +   F+  P +++   N+L+  L+    I+D                      
Sbjct: 189 KTGLVFCARQAFDEMPEKNVVMYNTLIAGLMRCSRIEDSRQLFYDMQEKDSISWTAMIAG 248

Query: 399 ---------AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449
                    A+++F  M  E + +D+ T  + L A     +   G  + +H   I++ ++
Sbjct: 249 FTQNGLDREAIDLFREMRLENLEMDQYTFGSVLTACGGVMALQEG--KQVHAYIIRTDYQ 306

Query: 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            NI V  +L+D Y +C  I+ +  VF K+   NVV +T+++ GY +NG   EA+ +   M
Sbjct: 307 DNIFVGSALVDMYCKCKSIKSAETVFRKMNCKNVVSWTAMLVGYGQNGYSEEAVKIFCDM 366

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569
              G+ PD  T   V++ C +   ++EG   F+    V G+ +     + ++ + G+ G 
Sbjct: 367 QNNGIEPDDFTLGSVISSCANLASLEEGA-QFHCRALVSGLISFITVSNALVTLYGKCGS 425

Query: 570 LDKAEELLQQTPGGGDCMMWSSLL 593
           ++ +  L  +     D + W++L+
Sbjct: 426 IEDSHRLFSEM-SYVDEVSWTALV 448



 Score =  120 bits (301), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 71/277 (25%), Positives = 142/277 (51%), Gaps = 2/277 (0%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T  ++   C  ++ L     + +Y  + + Q NI+  +  +D + K   + SA+ +F +M
Sbjct: 276 TFGSVLTACGGVMALQEGKQVHAYIIRTDYQDNIFVGSALVDMYCKCKSIKSAETVFRKM 335

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +++V++  ++ G G+  + ++A+ ++ +M ++GI+    T  SV+S C+N     EG 
Sbjct: 336 NCKNVVSWTAMLVGYGQNGYSEEAVKIFCDMQNNGIEPDDFTLGSVISSCANLASLEEGA 395

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q HCR L  G    + + + LV LY + G    +  LF E+   +  +W  ++  + +  
Sbjct: 396 QFHCRALVSGLISFITVSNALVTLYGKCGSIEDSHRLFSEMSYVDEVSWTALVSGYAQFG 455

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           + +E LR++  M A G +P+ ++F  ++  CS   L+ +G Q+   +IK   +       
Sbjct: 456 KANETLRLFESMLAHGFKPDKVTFIGVLSACSRAGLVQKGNQIFESMIKEHRIIPIEDHY 515

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
             ++D +S  G L EA+K  + +P   D I W S++S
Sbjct: 516 TCMIDLFSRAGRLEEARKFINKMPFSPDAIGWASLLS 552


>gi|356518183|ref|XP_003527761.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Glycine max]
          Length = 1582

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 178/598 (29%), Positives = 309/598 (51%), Gaps = 12/598 (2%)

Query: 74   DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
            D++ +N  +S   +     +A+  + +M++  +     TF  +LSV +       G QIH
Sbjct: 870  DVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIH 929

Query: 134  CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
              V+  G    + +G+ L+++Y++ G   RA  +F ++ E +L +WN M+   C LS  +
Sbjct: 930  GIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISG-CALSGLE 988

Query: 194  EV-LRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
            E  + M+  +   G+ P+  +   ++R CS +G       Q+H+  +K G V ++ FV+ 
Sbjct: 989  ECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHACAMKAGVV-LDSFVST 1047

Query: 252  ALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             L+D YS  G + EA+  F F+  D  D+ SWN+++  Y        AL L+  MQ   +
Sbjct: 1048 TLIDVYSKSGKMEEAE--FLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGE 1105

Query: 310  RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            R +  +       A     +  GKQI   V K GF+   + V S + DMY KC  +ES+ 
Sbjct: 1106 RANQITLANAAKAAGGLVGLKQGKQIQAVVVKRGFNL-DLFVISGVLDMYLKCGEMESAR 1164

Query: 370  AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
             +F   P        ++++  + +G  + A+  +  M    +  DE T +T +KA S+  
Sbjct: 1165 RIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHMRLSKVQPDEYTFATLVKACSLLT 1224

Query: 430  SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            +   G  R +H   +K     +  V  SL+D Y++CG+IE +  +F++  +  +  + ++
Sbjct: 1225 ALEQG--RQIHANTVKLNCAFDPFVMTSLVDMYAKCGNIEDARGLFKRTNTSRIASWNAM 1282

Query: 490  MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
            + G +++G   EAL   E M  RG+ PD+VTF+ VL+ C+HSG+V E    F SM+ +YG
Sbjct: 1283 IVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSACSHSGLVSEAYENFYSMQKIYG 1342

Query: 550  IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
            I+ + +HYSC++D L RAG + +AE+++   P      M+ +LL +CRV  +   G+RVA
Sbjct: 1343 IEPEIEHYSCLVDALSRAGRIREAEKVISSMPFEASASMYRTLLNACRVQVDRETGKRVA 1402

Query: 610  NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
              L+ LEP D A Y  +SN Y+   ++E     R       + +D G S +++ N  H
Sbjct: 1403 EKLLALEPSDSAAYVLLSNVYAAANQWENVASARNMMRKANVKKDPGFSWVDLKNKVH 1460



 Score =  160 bits (406), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 135/563 (23%), Positives = 260/563 (46%), Gaps = 42/563 (7%)

Query: 47   SNRTIDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
            +N  I  + K G L+SA+KLFD  P  +RD+VT+N ++S        +   +L+  +   
Sbjct: 664  TNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAHAD--KARDGFHLFRLLRRS 721

Query: 105  GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
             +  +  T + V  +C  +   +    +H   + +G   ++++   LV++Y + G    A
Sbjct: 722  FVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREA 781

Query: 165  LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR--GCS 222
              LFD +  R++  WN+M++A+ +     E L ++++    G+ P+ ++ C + R     
Sbjct: 782  RVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNRTGLRPDDVTLCTLARVVKSK 841

Query: 223  IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              +L  + KQL ++  KL             +      GS              DVI+WN
Sbjct: 842  QNVLEWQLKQLKAYGTKL------------FMYDDDDDGS--------------DVIAWN 875

Query: 283  SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
              +S +      ++A++ F  M   R      +FV  L+  +    +  GKQIHG V + 
Sbjct: 876  KTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSVVAGLNCLELGKQIHGIVVRS 935

Query: 343  GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
            G D   V V + L +MY K   +  +  VF       L   N++++    SG  + +V M
Sbjct: 936  GLDQ-VVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLVSWNTMISGCALSGLEECSVGM 994

Query: 403  FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLM 459
            F  ++  G+  D+ T+++ L+A S       G C L   +H CA+K+G   +  VS +L+
Sbjct: 995  FVDLLRGGLLPDQFTVASVLRACSSLG----GGCHLATQIHACAMKAGVVLDSFVSTTLI 1050

Query: 460  DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            D YS+ G +E +  +F      ++  + ++M+GY  +G   +AL +  +M + G   +++
Sbjct: 1051 DVYSKSGKMEEAEFLFVNQDGFDLASWNAMMHGYIVSGDFPKALRLYILMQESGERANQI 1110

Query: 520  TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            T             +K+G+ +  ++    G + D    S ++DM  + G ++ A  +  +
Sbjct: 1111 TLANAAKAAGGLVGLKQGKQI-QAVVVKRGFNLDLFVISGVLDMYLKCGEMESARRIFNE 1169

Query: 580  TPGGGDCMMWSSLLRSCRVHGNE 602
             P   D + W++++  C  +G E
Sbjct: 1170 IPSPDD-VAWTTMISGCVENGQE 1191



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 113/479 (23%), Positives = 219/479 (45%), Gaps = 40/479 (8%)

Query: 129  GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLATWNLMLRAF 186
            G + H R+L+ G   + ++ + L+ +Y + G    A  LFD  P+  R+L TWN +L A 
Sbjct: 645  GKRAHARILTSGHHPDRFLTNNLITMYSKCGSLSSARKLFDTTPDTSRDLVTWNAILSAH 704

Query: 187  CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
             + +R  +   ++  ++   V     +   + + C +       + LH + +K+G +  +
Sbjct: 705  ADKAR--DGFHLFRLLRRSFVSATRHTLAPVFKMCLLSASPSAAESLHGYAVKIG-LQWD 761

Query: 247  IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
            +FVA ALV+ Y+  G + EA+  FD + + DV+ WN ++  Y D  L ++AL LF     
Sbjct: 762  VFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVMMKAYVDTGLEYEALLLFSEFNR 821

Query: 307  CRKRPSIRSFVEFLNFASRTGNV--YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
               RP   +            NV  +  KQ+  Y TKL               MY     
Sbjct: 822  TGLRPDDVTLCTLARVVKSKQNVLEWQLKQLKAYGTKLF--------------MY----- 862

Query: 365  IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
                    +   G  +   N  ++  L  G   +AV+ F  M++  +  D +T    L  
Sbjct: 863  -------DDDDDGSDVIAWNKTLSWFLQRGETWEAVDCFVDMINSRVACDGLTFVVMLSV 915

Query: 425  LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
            ++      LG  + +H   ++SG +  ++V   L++ Y + G +  +  VF ++   ++V
Sbjct: 916  VAGLNCLELG--KQIHGIVVRSGLDQVVSVGNCLINMYVKTGSVSRARTVFWQMNEVDLV 973

Query: 485  CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH--SGMVKEGQLVFN 542
             + ++++G + +G+   ++ M   +++ GL+PD+ T   VL  C+    G     Q+   
Sbjct: 974  SWNTMISGCALSGLEECSVGMFVDLLRGGLLPDQFTVASVLRACSSLGGGCHLATQIHAC 1033

Query: 543  SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            +MK+  G+  D    + +ID+  ++G +++AE L      G D   W++++    V G+
Sbjct: 1034 AMKA--GVVLDSFVSTTLIDVYSKSGKMEEAEFLFVNQD-GFDLASWNAMMHGYIVSGD 1089



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 63/235 (26%), Positives = 121/235 (51%)

Query: 42   LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
            L+++  +  +D ++K G + SA+++F+E+P+ D V +  +ISGC +    + AL+ Y  M
Sbjct: 1142 LDLFVISGVLDMYLKCGEMESARRIFNEIPSPDDVAWTTMISGCVENGQEEHALFTYHHM 1201

Query: 102  VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
                ++    TF++++  CS      +G QIH   + L    + ++ + LVD+Y + G  
Sbjct: 1202 RLSKVQPDEYTFATLVKACSLLTALEQGRQIHANTVKLNCAFDPFVMTSLVDMYAKCGNI 1261

Query: 162  VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
              A  LF       +A+WN M+    +    +E L+ + +MK+ GV P+ ++F  ++  C
Sbjct: 1262 EDARGLFKRTNTSRIASWNAMIVGLAQHGNAEEALQFFEEMKSRGVTPDRVTFIGVLSAC 1321

Query: 222  SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
            S   L+ E  +    + K+  ++  I   + LVD  S  G + EA+K    +P +
Sbjct: 1322 SHSGLVSEAYENFYSMQKIYGIEPEIEHYSCLVDALSRAGRIREAEKVISSMPFE 1376



 Score = 79.0 bits (193), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 58/217 (26%), Positives = 104/217 (47%), Gaps = 8/217 (3%)

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
           SI  +   L  A    ++  GK+ H  +   G  H    + + L  MY KC  + S+  +
Sbjct: 625 SIPQWFSILRHAIAASDLPLGKRAHARILTSGH-HPDRFLTNNLITMYSKCGSLSSARKL 683

Query: 372 FESAP--GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
           F++ P   R L   N+++++  H+   +D   +F  +    +     TL+   K   +SA
Sbjct: 684 FDTTPDTSRDLVTWNAILSA--HADKARDGFHLFRLLRRSFVSATRHTLAPVFKMCLLSA 741

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           S +  +   LH  A+K G + ++ V+ +L++ Y++ G I  +  +F+ +   +VV +  +
Sbjct: 742 SPS--AAESLHGYAVKIGLQWDVFVAGALVNIYAKFGRIREARVLFDGMGLRDVVLWNVM 799

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
           M  Y   G+  EAL +     + GL PD VT LC LA
Sbjct: 800 MKAYVDTGLEYEALLLFSEFNRTGLRPDDVT-LCTLA 835


>gi|449453035|ref|XP_004144264.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g69350, mitochondrial-like [Cucumis sativus]
          Length = 804

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 172/606 (28%), Positives = 312/606 (51%), Gaps = 7/606 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+L+SA+K+F EMP RD+V+++ +IS   +     + L  +  MVS G    +    +V+
Sbjct: 148 GYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVV 207

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C   G        H  +L  G   + ++ S L+ +Y + G    A  +F+ +  R+ +
Sbjct: 208 EACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTS 267

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           TW  M+ ++       E L ++  M+   VEPN ++   ++R C+   LL EGK +H  V
Sbjct: 268 TWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVV 327

Query: 238 IKLGWVDVNI-FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           IK   +D N+  +   L++ Y+A       +K    I    +  WN+++S+YA   L+ +
Sbjct: 328 IKND-LDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKE 386

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
            ++LF RMQ     P   S    L+ +   G +  G QIHG+V K  F     +V ++L 
Sbjct: 387 TVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPF--MDEYVFNSLI 444

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           +MY KC  ++ +  +F+    + +   NS+++ L  +G    A+ +F  M      + EV
Sbjct: 445 NMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEV 504

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
              + ++A S       G  + +H   I  G    I +  +L+D Y++CG ++ + +VF+
Sbjct: 505 AFVSVIQACSHLGFLEKG--KWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFD 562

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            +   +VV ++S+++ Y  +G   E + +   M++ G+ P+ VT + VL+ C+H+G VKE
Sbjct: 563 NMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHAGCVKE 622

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G L FNSM+  +GI+  R+H+ C++D+L RAG LD+A E+++  P      +W +LL  C
Sbjct: 623 GMLFFNSMRD-FGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGC 681

Query: 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           R+H    I + +   L  ++  D   Y+ +SN Y+  GE+    ++R       L +   
Sbjct: 682 RIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEFGEVRSMMKGTGLKKVPA 741

Query: 657 HSLIEV 662
           +S++E+
Sbjct: 742 YSVVEL 747



 Score =  180 bits (456), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/560 (25%), Positives = 272/560 (48%), Gaps = 16/560 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI-----SGCGKFRHPKQALYLYDEM 101
           S + I+ + + G L S+  +F    + D   + +L+     +GC      ++A+ LY +M
Sbjct: 36  STKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNGC-----YQEAISLYHQM 90

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +S  I+ ++ TF SVL  CS  G    G ++H R++  GF ++  + + L+ +Y  +G  
Sbjct: 91  LSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVVNTALLSVYGELGYL 150

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F E+P R+L +W+ ++ +  E    +E L  +  M +EG  P+ +    +V  C
Sbjct: 151 DSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEAC 210

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +L   K  H +++K G ++ + FV ++L+  Y+ CGSL  A+  F+ +      +W
Sbjct: 211 GELGVLRLAKSAHGYILKRG-IENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTW 269

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +++S Y     + +AL LF  MQ     P+  +    L   +    +  GK +H  V K
Sbjct: 270 TAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIK 329

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D     +   L ++Y      +    +     GR +   N+L++     G +K+ V+
Sbjct: 330 NDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVD 389

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M  +G   D  +L+++L A        LG    +H   IK  F      + SL++ 
Sbjct: 390 LFVRMQKQGFMPDSFSLASSLSASGNEGELQLG--LQIHGHVIKRPFMDEYVFN-SLINM 446

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+CG+++L++ +F+++    VV + S+++G S+NG   +A+ + ++M        +V F
Sbjct: 447 YSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAF 506

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + V+  C+H G +++G+ + + + +  G+       + ++DM  + G L  A+ +     
Sbjct: 507 VSVIQACSHLGFLEKGKWIHHKLITC-GVRKCIFIETALVDMYAKCGDLQTAQRVFDNM- 564

Query: 582 GGGDCMMWSSLLRSCRVHGN 601
                + WSSL+ S  VHG 
Sbjct: 565 SERSVVSWSSLISSYGVHGQ 584



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 228/472 (48%), Gaps = 10/472 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  ++      +    + L++ Y ++G    +  +F      +   W ++L++     
Sbjct: 19  QLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNG 78

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E + +Y++M ++ ++ N  +F  ++R CS    L  G+++H  +IK G+ D++  V 
Sbjct: 79  CYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGF-DMDPVVN 137

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            AL+  Y   G L  A+K F  +P+ D++SW+SI+S   +   I + L+ F  M      
Sbjct: 138 TALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGT 197

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P     +  +      G +   K  HGY+ K G ++    V S+L  MY KC  + S+  
Sbjct: 198 PDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRF-VDSSLIFMYAKCGSLRSAEI 256

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VFE+   RS     ++++S    G +K+A+ +F  M    +  + VT+   L+  S +  
Sbjct: 257 VFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILR--SCTNL 314

Query: 431 ANLGSCRLLHCCAIKSGFESNI-AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           + L   + +HC  IK+  ++N+  +  +L++ Y+     +L  ++  +I    +  + ++
Sbjct: 315 SLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTL 374

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVY 548
           ++ Y++ G+ +E +D+   M ++G +PD  +    L+   + G ++ G Q+  + +K  +
Sbjct: 375 ISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPF 434

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
               D   ++ +I+M  + G +D A  +  Q    G  + W+S++     +G
Sbjct: 435 ---MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKG-VVTWNSMISGLSQNG 482



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 127/249 (51%), Gaps = 1/249 (0%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           L   L +  +    P ++ Y  N  I+ + K G+++ A  +FD+M  + +VT+N +ISG 
Sbjct: 419 LQLGLQIHGHVIKRPFMDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGL 478

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
            +  +  +A+ L+D M     +     F SV+  CS+ GF  +G  IH ++++ G    +
Sbjct: 479 SQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCI 538

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           +I + LVD+Y + G    A  +FD + ER++ +W+ ++ ++    +  EV+ +++KM   
Sbjct: 539 FIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLES 598

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G++PN ++   ++  CS    + EG    + +   G ++        +VD  S  G L E
Sbjct: 599 GIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRDFG-IEPKREHFVCIVDLLSRAGDLDE 657

Query: 266 AKKSFDFIP 274
           A +    +P
Sbjct: 658 AYEIIKLMP 666



 Score = 58.9 bits (141), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 73/154 (47%), Gaps = 3/154 (1%)

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           AS  L +   LH   I +   ++   S  L+++YS+ G ++ S  VF    SP+   +  
Sbjct: 10  ASTTLRTLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGV 69

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSV 547
           ++  +  NG  +EA+ +   M+ + +  +  TF  VL  C+  G +  GQ V    +KS 
Sbjct: 70  LLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKS- 128

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
            G D D    + ++ + G  G LD A ++  + P
Sbjct: 129 -GFDMDPVVNTALLSVYGELGYLDSARKVFGEMP 161


>gi|255560101|ref|XP_002521068.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539637|gb|EEF41219.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 579

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 151/534 (28%), Positives = 288/534 (53%), Gaps = 6/534 (1%)

Query: 131 QIHCRVLSLGFGLNLYIG-SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           QIH  +L+ G   N     + L+  Y R+   + A ++F+++P+R++  WN M+ A+   
Sbjct: 3   QIHALILTTGLFFNDANSIAQLIASYGRINNIIPARNVFEKMPQRSINAWNSMIIAYSRT 62

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
           + PDEVL +Y +M +EG++P+  +F   ++ CS  M LD G+ + +  +  G+   ++FV
Sbjct: 63  NYPDEVLNLYYRMISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGY-GFDVFV 121

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            +++++ Y+  G + +AK  FD +   DV+SW ++++ +A      DA++++  MQ  R 
Sbjct: 122 VSSVLNLYAKSGKMDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERT 181

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
                  V  +   +  G+  FG  +HG++ +   +  +V +Q++L DMY K   +E + 
Sbjct: 182 EGDGVVMVGLIQACTSLGDSKFGLSVHGHMVRREMNMDNV-LQTSLIDMYAKNGKLELAS 240

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
            VFE  P +S+    +L++    +G     +     M + G   D V+L ++L A   + 
Sbjct: 241 RVFEGIPYKSVISWGALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSA--CAQ 298

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
             NL   + LH   +K  +   ++   +L+D Y++CG +  +  +F++I   +++ + ++
Sbjct: 299 VGNLKVGKSLHGHIVKRLYLDKVS-GTALIDMYAKCGALTFARALFDQIEPRDLILWNAM 357

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           ++ Y  +G G EAL +   M +  + PD  TF  +L+ C+HSG+V+EGQ  F+ +     
Sbjct: 358 ISSYGIHGDGIEALSLFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSK 417

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
           I    +HY+CM+D+L RAG +++A +L++         +W +LL  C  H N +IG  VA
Sbjct: 418 IQPSEKHYACMVDLLSRAGQVEEAYQLIESMHIKPGLAIWVALLSGCLNHKNLLIGEMVA 477

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             ++E  P D  +Y  VSNF+S   +++ +   R+      + +  G+S +EVN
Sbjct: 478 KKILESNPDDLGIYVLVSNFFSMAKKWDDAAVFRKIMKNTGMRKVPGYSAVEVN 531



 Score =  187 bits (474), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/440 (26%), Positives = 224/440 (50%), Gaps = 10/440 (2%)

Query: 58  GHLNS---AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
           G +N+   A+ +F++MP R +  +N +I    +  +P + L LY  M+S GIK  +STF+
Sbjct: 29  GRINNIIPARNVFEKMPQRSINAWNSMIIAYSRTNYPDEVLNLYYRMISEGIKPDSSTFT 88

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
             L  CS+      G  I  + +  G+G ++++ S +++LY + G   +A  +FD++ +R
Sbjct: 89  VTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGKMDKAKIVFDKMVKR 148

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           ++ +W  M+  F +  RP + + +Y  M+ E  E +G+    +++ C+       G  +H
Sbjct: 149 DVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQACTSLGDSKFGLSVH 208

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
            H+++   ++++  +  +L+D Y+  G L  A + F+ IP   VISW +++S +A     
Sbjct: 209 GHMVRRE-MNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISWGALISGFAQNGFA 267

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFDHGSVHVQS 353
              L     MQ    +P + S +  L+  ++ GN+  GK +HG++ K L  D  S    +
Sbjct: 268 NKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVKRLYLDKVS---GT 324

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL DMY KC  +  + A+F+    R L   N++++S    G+  +A+ +F  M +  I  
Sbjct: 325 ALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALSLFLKMKETNITP 384

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D  T ++ L A S S     G     H    KS  + +      ++D  SR G +E ++Q
Sbjct: 385 DHATFASLLSACSHSGLVEEGQY-WFHVLIDKSKIQPSEKHYACMVDLLSRAGQVEEAYQ 443

Query: 474 VFEKIP-SPNVVCFTSIMNG 492
           + E +   P +  + ++++G
Sbjct: 444 LIESMHIKPGLAIWVALLSG 463



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 189/401 (47%), Gaps = 10/401 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M+S  + P   T T     C+S++ L    ++ +         +++  +  ++ + KSG 
Sbjct: 75  MISEGIKPDSSTFTVTLKACSSLMDLDMGEIIWNQAVDFGYGFDVFVVSSVLNLYAKSGK 134

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ AK +FD+M  RD+V++  +I+G  +   P  A+ +Y  M     +        ++  
Sbjct: 135 MDKAKIVFDKMVKRDVVSWTTMITGFAQSGRPLDAIDIYRTMQKERTEGDGVVMVGLIQA 194

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C++ G    G+ +H  ++     ++  + + L+D+Y + G    A  +F+ +P +++ +W
Sbjct: 195 CTSLGDSKFGLSVHGHMVRREMNMDNVLQTSLIDMYAKNGKLELASRVFEGIPYKSVISW 254

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             ++  F +    ++ L    +M+  G +P+ +S    +  C+    L  GK LH H++K
Sbjct: 255 GALISGFAQNGFANKTLASLVEMQNSGFKPDLVSLISSLSACAQVGNLKVGKSLHGHIVK 314

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
             ++D       AL+D Y+ CG+L  A+  FD I   D+I WN+++S Y  +    +AL 
Sbjct: 315 RLYLDK--VSGTALIDMYAKCGALTFARALFDQIEPRDLILWNAMISSYGIHGDGIEALS 372

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK-QIHGYVTKLGFDHGSVHVQSALTDM 358
           LF +M+     P   +F   L+  S +G V  G+   H  + K        H  + + D+
Sbjct: 373 LFLKMKETNITPDHATFASLLSACSHSGLVEEGQYWFHVLIDKSKIQPSEKHY-ACMVDL 431

Query: 359 YGKCNVIESSVAVFES---APGRSLECCNSLMTSLLHSGNI 396
             +   +E +  + ES    PG  L    +L++  L+  N+
Sbjct: 432 LSRAGQVEEAYQLIESMHIKPG--LAIWVALLSGCLNHKNL 470


>gi|2191182|gb|AAB61067.1| similar to N. tabacum membrane-associated salt-inducible protein
           (PID:g473874) [Arabidopsis thaliana]
          Length = 597

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 174/583 (29%), Positives = 296/583 (50%), Gaps = 49/583 (8%)

Query: 102 VSHGIKE-----SASTFSSVLSVCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLY 155
           +SH  K+      +S   S+L  C+N+      I+ +H R+L+LG   ++ +   L+++Y
Sbjct: 17  ISHDKKKCELEMESSKLLSLLRECTNSTKSLRRIKLVHQRILTLGLRRDVVLCKSLINVY 76

Query: 156 MRMGPSVRALDLFDELPERN---------LATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
                   A  +F+    R+          A+WN ++  F +    ++ L ++ +M++ G
Sbjct: 77  FTCKDHCSARHVFENFDIRSDVYIWNSLMSASWNTVISCFYQSGEAEKALELFGRMESSG 136

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
            EPN +S    +  CS  + L+ GK++H   +K G+ +++ +V +ALVD Y  C  L  A
Sbjct: 137 FEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGF-ELDEYVNSALVDMYGKCDCLEVA 195

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           ++ F  +P   +++WNS++  Y         +E+  RM +   RPS  +    L   SR+
Sbjct: 196 REVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRS 255

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
            N+  GK IH                          N+ E+   VF        E  N +
Sbjct: 256 RNLLHGKFIHA-------------------------NLAET---VFSKTQKDVAESWNVM 287

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           ++S +  GN   AVE++  MV  G+  D VT ++ L A S  A+   G  + +H    +S
Sbjct: 288 ISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKG--KQIHLSISES 345

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
             E++  +  +L+D YS+CG+ + + ++F  IP  +VV +T +++ Y  +G  REAL   
Sbjct: 346 RLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQF 405

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
           + M + GL PD VT L VL+ C H+G++ EG   F+ M+S YGI+   +HYSCMID+LGR
Sbjct: 406 DEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHYSCMIDILGR 465

Query: 567 AGILDKAEELLQQTPGGGD-CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           AG L +A E++QQTP   D   + S+L  +C +H    +G R+A +L+E  P D + Y  
Sbjct: 466 AGRLLEAYEIIQQTPETSDNAELLSTLFSACCLHLEHSLGDRIARLLVENYPDDASTYMV 525

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS--CH 666
           + N Y+    ++ + ++R       L +  G S IE++   CH
Sbjct: 526 LFNLYASGESWDAARRVRLKMKEMGLRKKPGCSWIEMSDKVCH 568



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 99/427 (23%), Positives = 186/427 (43%), Gaps = 39/427 (9%)

Query: 62  SAKKLFDEMPARDMV---------TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST 112
           SA+ +F+    R  V         ++N +IS   +    ++AL L+  M S G + ++ +
Sbjct: 84  SARHVFENFDIRSDVYIWNSLMSASWNTVISCFYQSGEAEKALELFGRMESSGFEPNSVS 143

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
            +  +S CS   +   G +IH + +  GF L+ Y+ S LVD+Y +      A ++F ++P
Sbjct: 144 LTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDCLEVAREVFQKMP 203

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            ++L  WN M++ +         + + N+M  EG  P+  +   ++  CS    L  GK 
Sbjct: 204 RKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMACSRSRNLLHGKF 263

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H+++                            A+  F     D   SWN ++S Y    
Sbjct: 264 IHANL----------------------------AETVFSKTQKDVAESWNVMISSYISVG 295

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
             F A+E++ +M     +P + +F   L   S+   +  GKQIH  +++   +   + + 
Sbjct: 296 NWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISESRLETDEL-LL 354

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           SAL DMY KC   + +  +F S P + +     ++++    G  ++A+  F  M   G+ 
Sbjct: 355 SALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALYQFDEMQKFGLK 414

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D VTL   L A   +   + G  +       K G E  I     ++D   R G +  ++
Sbjct: 415 PDGVTLLAVLSACGHAGLIDEG-LKFFSQMRSKYGIEPIIEHYSCMIDILGRAGRLLEAY 473

Query: 473 QVFEKIP 479
           ++ ++ P
Sbjct: 474 EIIQQTP 480



 Score =  110 bits (274), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 85/381 (22%), Positives = 173/381 (45%), Gaps = 31/381 (8%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M S+   P   ++T     C+ ++ L     +   C +   +L+ Y ++  +D + K   
Sbjct: 132 MESSGFEPNSVSLTVAISACSRLLWLERGKEIHRKCVKKGFELDEYVNSALVDMYGKCDC 191

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A+++F +MP + +V +N +I G       K  + + + M+  G + S +T +S+L  
Sbjct: 192 LEVAREVFQKMPRKSLVAWNSMIKGYVAKGDSKSCVEILNRMIIEGTRPSQTTLTSILMA 251

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS +     G  IH  +                           A  +F +  +    +W
Sbjct: 252 CSRSRNLLHGKFIHANL---------------------------AETVFSKTQKDVAESW 284

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N+M+ ++  +    + + +Y++M + GV+P+ ++F  ++  CS    L++GKQ+H  + +
Sbjct: 285 NVMISSYISVGNWFKAVEVYDQMVSVGVKPDVVTFTSVLPACSQLAALEKGKQIHLSISE 344

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              ++ +  + +AL+D YS CG+  EA + F+ IP  DV+SW  ++S Y  +    +AL 
Sbjct: 345 -SRLETDELLLSALLDMYSKCGNEKEAFRIFNSIPKKDVVSWTVMISAYGSHGQPREALY 403

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV-TKLGFDHGSVHVQSALTDM 358
            F  MQ    +P   + +  L+     G +  G +    + +K G +    H  S + D+
Sbjct: 404 QFDEMQKFGLKPDGVTLLAVLSACGHAGLIDEGLKFFSQMRSKYGIEPIIEHY-SCMIDI 462

Query: 359 YGKCNVIESSVAVFESAPGRS 379
            G+   +  +  + +  P  S
Sbjct: 463 LGRAGRLLEAYEIIQQTPETS 483


>gi|449489376|ref|XP_004158293.1| PREDICTED: LOW QUALITY PROTEIN: putative pentatricopeptide
           repeat-containing protein At1g69350, mitochondrial-like
           [Cucumis sativus]
          Length = 804

 Score =  264 bits (675), Expect = 9e-68,   Method: Compositional matrix adjust.
 Identities = 172/606 (28%), Positives = 312/606 (51%), Gaps = 7/606 (1%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+L+SA+K+F EMP RD+V+++ +IS   +     + L  +  MVS G    +    +V+
Sbjct: 148 GYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVV 207

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C   G        H  +L  G   + ++ S L+ +Y + G    A  +F+ +  R+ +
Sbjct: 208 EACGELGVLRLAKSAHGYILKRGIENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTS 267

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           TW  M+ ++       E L ++  M+   VEPN ++   ++R C+   LL EGK +H  V
Sbjct: 268 TWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVV 327

Query: 238 IKLGWVDVNI-FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           IK   +D N+  +   L++ Y+A       +K    I    +  WN+++S+YA   L+ +
Sbjct: 328 IKND-LDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKE 386

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
            ++LF RMQ     P   S    L+ +   G +  G QIHG+V K  F     +V ++L 
Sbjct: 387 TVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPF--MDEYVFNSLI 444

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
           +MY KC  ++ +  +F+    + +   NS+++ L  +G    A+ +F  M      + EV
Sbjct: 445 NMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEV 504

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
              + ++A S       G  + +H   I  G    I +  +L+D Y++CG ++ + +VF+
Sbjct: 505 AFVSVIQACSHLGFLEKG--KWIHHKLITCGVRKCIFIETALVDMYAKCGDLQTAQRVFD 562

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            +   +VV ++S+++ Y  +G   E + +   M++ G+ P+ VT + VL+ C+H+G VKE
Sbjct: 563 NMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLESGIKPNDVTVMNVLSACSHAGCVKE 622

Query: 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
           G L FNSM+  +GI+  R+H+ C++D+L RAG LD+A E+++  P      +W +LL  C
Sbjct: 623 GMLFFNSMRD-FGIEPKREHFVCIVDLLSRAGDLDEAYEIIKLMPFPPGASIWGALLNGC 681

Query: 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           R+H    I + +   L  ++  D   Y+ +SN Y+  GE+    ++R       L +   
Sbjct: 682 RIHQRMDIAKNIQRELWNIQTDDTGHYTLLSNIYAAGGEWNEFGEVRSMMKGTGLKKVPA 741

Query: 657 HSLIEV 662
           +S++E+
Sbjct: 742 YSVVEL 747



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 140/560 (25%), Positives = 272/560 (48%), Gaps = 16/560 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLI-----SGCGKFRHPKQALYLYDEM 101
           S + I+ + + G L S+  +F    + D   + +L+     +GC      ++A+ LY +M
Sbjct: 36  STKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNGC-----YQEAISLYHQM 90

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           +S  I+ ++ TF SVL  CS  G    G ++H R++  GF ++  + + L+ +Y  +G  
Sbjct: 91  LSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGFDMDPVVNTALLSVYGELGYL 150

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F E+P R+L +W+ ++ +  E    +E L  +  M +EG  P+ +    +V  C
Sbjct: 151 DSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGTPDSVLVLTVVEAC 210

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
               +L   K  H +++K G ++ + FV ++L+  Y+ CGSL  A+  F+ +      +W
Sbjct: 211 GELGVLRLAKSAHGYILKRG-IENDRFVDSSLIFMYAKCGSLRSAEIVFENVTYRSTSTW 269

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +++S Y     + +AL LF  MQ     P+  +    L   +    +  GK +H  V K
Sbjct: 270 TAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILRSCTNLSLLREGKSVHCVVIK 329

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D     +   L ++Y      +    +     GR +   N+L++     G +K+ V+
Sbjct: 330 NDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTLISVYAQKGLLKETVD 389

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           +F  M  +G   D  +L+++L A        LG    +H   IK  F      + SL++ 
Sbjct: 390 LFVRMQKQGFMPDSFSLASSLSASGNEGELQLG--LQIHGHVIKRPFMDEYVFN-SLINM 446

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           YS+CG+++L++ +F+++    VV + S+++G S+NG   +A+ + ++M        +V F
Sbjct: 447 YSKCGYVDLAYMIFDQMEPKGVVTWNSMISGLSQNGYSTKAISLFDLMYVTCPEIGEVAF 506

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
           + V+  C+H G +++G+ + + + +  G+       + ++DM  + G L  A+ +     
Sbjct: 507 VSVIQACSHLGFLEKGKWIHHKLITC-GVRKCIFIETALVDMYAKCGDLQTAQRVFDNM- 564

Query: 582 GGGDCMMWSSLLRSCRVHGN 601
                + WSSL+ S  VHG 
Sbjct: 565 SERSVVSWSSLISSYGVHGQ 584



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 108/472 (22%), Positives = 228/472 (48%), Gaps = 10/472 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H  ++      +    + L++ Y ++G    +  +F      +   W ++L++     
Sbjct: 19  QLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGVLLKSHVWNG 78

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E + +Y++M ++ ++ N  +F  ++R CS    L  G+++H  +IK G+ D++  V 
Sbjct: 79  CYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKSGF-DMDPVVN 137

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            AL+  Y   G L  A+K F  +P+ D++SW+SI+S   +   I + L+ F  M      
Sbjct: 138 TALLSVYGELGYLDSARKVFGEMPLRDLVSWSSIISSVVENGEINEGLDAFRCMVSEGGT 197

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P     +  +      G +   K  HGY+ K G ++    V S+L  MY KC  + S+  
Sbjct: 198 PDSVLVLTVVEACGELGVLRLAKSAHGYILKRGIENDRF-VDSSLIFMYAKCGSLRSAEI 256

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VFE+   RS     ++++S    G +K+A+ +F  M    +  + VT+   L+  S +  
Sbjct: 257 VFENVTYRSTSTWTAMISSYNLGGYLKEALALFVSMQKTEVEPNSVTMRIILR--SCTNL 314

Query: 431 ANLGSCRLLHCCAIKSGFESNI-AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           + L   + +HC  IK+  ++N+  +  +L++ Y+     +L  ++  +I    +  + ++
Sbjct: 315 SLLREGKSVHCVVIKNDLDANLDCLGPTLLELYAATAKHDLCEKILHEIGGRGIAVWNTL 374

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVY 548
           ++ Y++ G+ +E +D+   M ++G +PD  +    L+   + G ++ G Q+  + +K  +
Sbjct: 375 ISVYAQKGLLKETVDLFVRMQKQGFMPDSFSLASSLSASGNEGELQLGLQIHGHVIKRPF 434

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
               D   ++ +I+M  + G +D A  +  Q    G  + W+S++     +G
Sbjct: 435 ---MDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKG-VVTWNSMISGLSQNG 482



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 65/249 (26%), Positives = 127/249 (51%), Gaps = 1/249 (0%)

Query: 26  LSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC 85
           L   L +  +    P ++ Y  N  I+ + K G+++ A  +FD+M  + +VT+N +ISG 
Sbjct: 419 LQLGLQIHGHVIKRPFMDEYVFNSLINMYSKCGYVDLAYMIFDQMEPKGVVTWNSMISGL 478

Query: 86  GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL 145
            +  +  +A+ L+D M     +     F SV+  CS+ GF  +G  IH ++++ G    +
Sbjct: 479 SQNGYSTKAISLFDLMYVTCPEIGEVAFVSVIQACSHLGFLEKGKWIHHKLITCGVRKCI 538

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           +I + LVD+Y + G    A  +FD + ER++ +W+ ++ ++    +  EV+ +++KM   
Sbjct: 539 FIETALVDMYAKCGDLQTAQRVFDNMSERSVVSWSSLISSYGVHGQISEVIFLFSKMLES 598

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           G++PN ++   ++  CS    + EG    + +   G ++        +VD  S  G L E
Sbjct: 599 GIKPNDVTVMNVLSACSHAGCVKEGMLFFNSMRDFG-IEPKREHFVCIVDLLSRAGDLDE 657

Query: 266 AKKSFDFIP 274
           A +    +P
Sbjct: 658 AYEIIKLMP 666



 Score = 58.2 bits (139), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 41/154 (26%), Positives = 72/154 (46%), Gaps = 3/154 (1%)

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           AS  L     LH   I +   ++   S  L+++YS+ G ++ S  VF    SP+   +  
Sbjct: 10  ASTTLRQLAQLHAHIIVTALHNDPLPSTKLIESYSQLGDLQSSTSVFRTFHSPDSFMWGV 69

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSV 547
           ++  +  NG  +EA+ +   M+ + +  +  TF  VL  C+  G +  GQ V    +KS 
Sbjct: 70  LLKSHVWNGCYQEAISLYHQMLSQQIQANSYTFPSVLRACSGFGDLGVGQRVHGRIIKS- 128

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
            G D D    + ++ + G  G LD A ++  + P
Sbjct: 129 -GFDMDPVVNTALLSVYGELGYLDSARKVFGEMP 161


>gi|449457327|ref|XP_004146400.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 165/533 (30%), Positives = 287/533 (53%), Gaps = 10/533 (1%)

Query: 135 RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
           RV       N++  + L+  Y +      A  LFDE+P+ +  ++N ++ A+        
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQP 123

Query: 195 VLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
             +++ +M+   ++ +G +   ++  C I + L   +QLH+  +  G +D  + V NAL+
Sbjct: 124 AFQLFLEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTG-LDSYVSVGNALI 180

Query: 255 DFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
             YS  G L EA++ F ++  D D +SWNS+V  Y  +     ALEL+  M +      I
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDI 240

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN-VIESSVAVF 372
            +    L   +   ++  G Q H  + K G+ H + HV S L D+Y KC   +     VF
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGY-HQNSHVGSGLIDLYSKCGGCMLDCRKVF 299

Query: 373 ESAPGRSLECCNSLMTSL-LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           +      L   N++++   L+     +A+E F  +   G   D+ +L   + A S  +S 
Sbjct: 300 DEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSP 359

Query: 432 NLGSCRLLHCCAIKSGFESN-IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           + G  R +H  A+K    SN I+V+ +L+  YS+CG++  +  +F+ +P  N V + S++
Sbjct: 360 SQG--RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMI 417

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            GY+++GMG ++L + + M++ G  P  +TF+ VLA C H+G V++G++ FN MK  +GI
Sbjct: 418 AGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGI 477

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
           + +  H+SCMID+LGRAG L +AE L++  P       WS+LL +CR+HGN  +  + AN
Sbjct: 478 EPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACRIHGNVELAIKAAN 537

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            L++L+P++ A Y  ++N YS+ G  + +  +R+    R + +  G S IEVN
Sbjct: 538 RLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 126/459 (27%), Positives = 214/459 (46%), Gaps = 13/459 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++S N  I  + K  ++  A +LFDEMP  D V+YN LI+   +    + A  L+ EM 
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 103 SHGIKESASTFSSVLSVCS-NAGFYTEGIQIHCRVLSLGFGLNLY--IGSPLVDLYMRMG 159
              +     T S +++ C  N G      Q+H   LS+  GL+ Y  +G+ L+  Y + G
Sbjct: 133 EAFLDMDGFTLSGIITACGINVGLIR---QLH--ALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 160 PSVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
               A  +F  L E R+  +WN M+ A+ +     + L +Y +M   G+  +  +   ++
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS-LIEAKKSFDFIPVDD 277
              +    L  G Q H+ +IK G+   N  V + L+D YS CG  +++ +K FD I   D
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGY-HQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPD 306

Query: 278 VISWNSIVSIYADY-DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           ++ WN+++S Y+ Y DL  +ALE F ++Q+   RP   S V  ++  S   +   G+Q+H
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQVH 366

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G   KL      + V +AL  MY KC  +  +  +F++ P  +    NS++      G  
Sbjct: 367 GLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG 426

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
             ++ +F  M++ G     +T  + L A + +     G     +    K G E       
Sbjct: 427 FQSLHLFQRMLEMGFTPTNITFISVLAACAHTGRVEDGKI-YFNMMKQKFGIEPEAGHFS 485

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            ++D   R G +  + ++ E IP      F S + G  R
Sbjct: 486 CMIDLLGRAGKLSEAERLIETIPFDPGFFFWSALLGACR 524



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 177/353 (50%), Gaps = 21/353 (5%)

Query: 32  LDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRH 90
           LDSY        +   N  I  + K+G L  A+++F  +   RD V++N ++    + R 
Sbjct: 169 LDSY--------VSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHRE 220

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
             +AL LY EM   G+     T +SVL+  +N      G+Q H +++  G+  N ++GS 
Sbjct: 221 GSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSG 280

Query: 151 LVDLYMRMGPSVRALD---LFDELPERNLATWNLMLRAFC---ELSRPDEVLRMYNKMKA 204
           L+DLY + G  +  LD   +FDE+   +L  WN M+  +    +LS  DE L  + +++ 
Sbjct: 281 LIDLYSKCGGCM--LDCRKVFDEISNPDLVLWNTMISGYSLYEDLS--DEALECFRQLQV 336

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
            G  P+  S   ++  CS      +G+Q+H   +KL      I V NAL+  YS CG+L 
Sbjct: 337 VGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLR 396

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
           +AK  FD +P  + +S+NS+++ YA + + F +L LF RM      P+  +F+  L   +
Sbjct: 397 DAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMGFTPTNITFISVLAACA 456

Query: 325 RTGNVYFGKQIHGYVT-KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            TG V  GK     +  K G +  + H  S + D+ G+   +  +  + E+ P
Sbjct: 457 HTGRVEDGKIYFNMMKQKFGIEPEAGHF-SCMIDLLGRAGKLSEAERLIETIP 508



 Score =  103 bits (257), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 104/402 (25%), Positives = 184/402 (45%), Gaps = 38/402 (9%)

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           +F   ++ C     L  GK LH+  IK  +V  + +++N  +  YS C  L  A++ FD 
Sbjct: 10  NFRQFLKTCIAHRDLRTGKSLHALYIK-SFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRM-------------QLCRK---RPSIRSF 316
               +V S+N+++S YA    +  A +LF  M                R+   +P+ + F
Sbjct: 69  THDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLF 128

Query: 317 VE----FLNFASRT---------GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +E    FL+    T          NV   +Q+H      G D   V V +AL   Y K  
Sbjct: 129 LEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLD-SYVSVGNALITSYSKNG 187

Query: 364 VIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
            ++ +  +F   +  R     NS++ + +       A+E++  M   G+ +D  TL++ L
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS-HQVFEKIPSP 481
            A + +    LG  +  H   IKSG+  N  V   L+D YS+CG   L   +VF++I +P
Sbjct: 248 TAFT-NVQDLLGGLQ-FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNP 305

Query: 482 NVVCFTSIMNGYS-RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           ++V + ++++GYS    +  EAL+    +   G  PD  + +CV++ C++     +G+ V
Sbjct: 306 DLVLWNTMISGYSLYEDLSDEALECFRQLQVVGHRPDDCSLVCVISACSNMSSPSQGRQV 365

Query: 541 FNSMKSVYGIDADRQHY-SCMIDMLGRAGILDKAEELLQQTP 581
            + +     I ++R    + +I M  + G L  A+ L    P
Sbjct: 366 -HGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP 406



 Score = 69.3 bits (168), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 47/149 (31%), Positives = 76/149 (51%), Gaps = 4/149 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P   I  +N  I  + K G+L  AK LFD MP  + V+YN +I+G  +     Q+L+L+ 
Sbjct: 375 PSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQ 434

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMR 157
            M+  G   +  TF SVL+ C++ G   +G +I+  ++   FG+    G  S ++DL  R
Sbjct: 435 RMLEMGFTPTNITFISVLAACAHTGRVEDG-KIYFNMMKQKFGIEPEAGHFSCMIDLLGR 493

Query: 158 MGPSVRALDLFDELP-ERNLATWNLMLRA 185
            G    A  L + +P +     W+ +L A
Sbjct: 494 AGKLSEAERLIETIPFDPGFFFWSALLGA 522


>gi|357129947|ref|XP_003566620.1| PREDICTED: pentatricopeptide repeat-containing protein At3g09040,
           mitochondrial-like [Brachypodium distachyon]
          Length = 902

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 171/624 (27%), Positives = 318/624 (50%), Gaps = 5/624 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++  +  I+ + K G +  A  +FD    +++V +N +++G  +  +  +A+ ++  M 
Sbjct: 234 NVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQMFLYMK 293

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++    T+ SVL  C++   +  G Q+ C  +      +L++ +  +D++ + G   
Sbjct: 294 RLGLEADEFTYVSVLGACAHLDSHCLGRQVQCVTIKNCMDASLFVANATLDMHSKFGAID 353

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF+ +  ++  +WN +L         +E + M   M  +GV P+ +SF  ++  CS
Sbjct: 354 DAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFATVINACS 413

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                + GKQ+H   +K   +  N  V ++L+DFYS  G +   +K    +    ++  N
Sbjct: 414 NIRATETGKQIHCLAMKHS-ICSNHAVGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRN 472

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
            +++     +   +A++LF ++     +PS  +F   L+  +   +   GKQ+H Y  K 
Sbjct: 473 VLIAGLVQNNREDEAIDLFQQVLRDGLKPSSFTFSSILSGCTGLLSSIIGKQVHCYTLKS 532

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVE 401
           GF +    V  +L   Y K  + E +  +    P  ++L    ++++    +G    ++ 
Sbjct: 533 GFLNDDTSVGVSLVGTYLKARMPEDANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLL 592

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
            F  M    +  DEVT ++ LKA S   + + G  + +H   IKSGF S    + +++D 
Sbjct: 593 SFWRMRSYDVHPDEVTFASILKACSEMTALSDG--KEIHGLIIKSGFGSYKTATSAIIDM 650

Query: 462 YSRCGHIELSHQVFEKIPSP-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
           YS+CG I  S + F+++ S  ++  + S++ G+++NG   EAL + + M    +  D+VT
Sbjct: 651 YSKCGDIISSFEAFKELKSKQDITLWNSMILGFAKNGYADEALLLFQKMQDSQIKSDEVT 710

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VL  C H+G++ EG+  F+SM  VYGI     HY+C ID+LGR G L +A+E++ + 
Sbjct: 711 FLGVLIACAHAGLISEGRHYFDSMSKVYGIMPRVDHYACFIDLLGRGGHLQEAQEVINEL 770

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D ++W++ L +CR+H +E  G   A  L+ELEP + + Y  +SN Y+  G +  + 
Sbjct: 771 PFRPDGVIWATYLAACRMHKDEERGEIAAKELVELEPQNSSTYVLLSNMYAAAGNWVEAK 830

Query: 641 QIRETALARKLTRDIGHSLIEVNS 664
             RE    +  T+  G S I V +
Sbjct: 831 MAREAMREKGATKFPGCSWITVGN 854



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 153/546 (28%), Positives = 272/546 (49%), Gaps = 21/546 (3%)

Query: 58  GHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALY-LYDEMVSHGIKESASTFSS 115
           G L  A+ L   MPA    V +N +ISG  +    +  ++ LY +M   G+  + STF+S
Sbjct: 146 GRLEDARTLLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFAS 205

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           +LS  +NA  + EG Q+H   +  G   N+++GS L++LY + G    A+ +FD   E+N
Sbjct: 206 MLSAAANATAFIEGRQVHAAAVRHGLDANVFVGSSLINLYAKCGCIGDAILVFDCSGEKN 265

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE---GKQ 232
           +  WN ML          E ++M+  MK  G+E +  ++  ++  C+    LD    G+Q
Sbjct: 266 VVMWNAMLNGLVRNEYQVEAIQMFLYMKRLGLEADEFTYVSVLGACA---HLDSHCLGRQ 322

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +    IK   +D ++FVANA +D +S  G++ +AK  F+ I   D +SWN+++      +
Sbjct: 323 VQCVTIK-NCMDASLFVANATLDMHSKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNE 381

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF--DHGSVH 350
              +A+ +   M L    P   SF   +N  S       GKQIH    K     +H    
Sbjct: 382 EDEEAIHMLKGMNLDGVTPDEVSFATVINACSNIRATETGKQIHCLAMKHSICSNHA--- 438

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V S+L D Y K   +ES   V       S+   N L+  L+ +    +A+++F  ++ +G
Sbjct: 439 VGSSLIDFYSKHGDVESCRKVLAQVDASSIVPRNVLIAGLVQNNREDEAIDLFQQVLRDG 498

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIE 469
           +     T S+ L   +   S+ +G  + +HC  +KSGF   + +V  SL+  Y +    E
Sbjct: 499 LKPSSFTFSSILSGCTGLLSSIIG--KQVHCYTLKSGFLNDDTSVGVSLVGTYLKARMPE 556

Query: 470 LSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
            ++++  ++P   N+V +T+I++GY++NG   ++L     M    + PD+VTF  +L  C
Sbjct: 557 DANKLLIEMPDHKNLVEWTAIVSGYAQNGYSYQSLLSFWRMRSYDVHPDEVTFASILKAC 616

Query: 529 NHSGMVKEGQLVFN-SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           +    + +G+ +    +KS +G  + +   S +IDM  + G +  + E  ++     D  
Sbjct: 617 SEMTALSDGKEIHGLIIKSGFG--SYKTATSAIIDMYSKCGDIISSFEAFKELKSKQDIT 674

Query: 588 MWSSLL 593
           +W+S++
Sbjct: 675 LWNSMI 680



 Score =  141 bits (355), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/477 (22%), Positives = 217/477 (45%), Gaps = 42/477 (8%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G++      ++ LS CS  G    G Q HC     G G   +  + LV++Y R G    A
Sbjct: 26  GVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAFCAAALVNMYARCGRVGDA 85

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F  +   +   W  M+  +    R  E + ++ +M+  G  P+ ++   +V  C++ 
Sbjct: 86  RRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSPDRVTCVAVV--CAL- 142

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNS 283
                                            +A G L +A+     +P     ++WN+
Sbjct: 143 ---------------------------------TALGRLEDARTLLHRMPAPSSTVAWNA 169

Query: 284 IVSIYADYDLI-FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++S YA    I  +   L+  M+     P+  +F   L+ A+       G+Q+H    + 
Sbjct: 170 VISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANATAFIEGRQVHAAAVRH 229

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G D  +V V S+L ++Y KC  I  ++ VF+ +  +++   N+++  L+ +    +A++M
Sbjct: 230 GLD-ANVFVGSSLINLYAKCGCIGDAILVFDCSGEKNVVMWNAMLNGLVRNEYQVEAIQM 288

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F +M   G+  DE T  + L A +   S  LG  R + C  IK+  ++++ V+ + +D +
Sbjct: 289 FLYMKRLGLEADEFTYVSVLGACAHLDSHCLG--RQVQCVTIKNCMDASLFVANATLDMH 346

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           S+ G I+ +  +F  I   + V + +++ G + N    EA+ ML+ M   G+ PD+V+F 
Sbjct: 347 SKFGAIDDAKTLFNLITYKDTVSWNALLVGLTHNEEDEEAIHMLKGMNLDGVTPDEVSFA 406

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
            V+  C++    + G+ + + +   + I ++    S +ID   + G ++   ++L Q
Sbjct: 407 TVINACSNIRATETGKQI-HCLAMKHSICSNHAVGSSLIDFYSKHGDVESCRKVLAQ 462



 Score = 70.1 bits (170), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 70/302 (23%), Positives = 130/302 (43%), Gaps = 46/302 (15%)

Query: 298 LELFFRMQLCRK----RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
           L+ F R + C      RP        L+  SR G +  GKQ H    K G   G+    +
Sbjct: 12  LDAFVRARRCSAGGGVRPDQFDLAATLSACSRLGALVSGKQAHCDAEKRGLGSGAF-CAA 70

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           AL +MY +C  +  +  VF         C  S+++    +G  ++AV +F  M   G   
Sbjct: 71  ALVNMYARCGRVGDARRVFGGISLPDTVCWASMISGYHRAGRFQEAVCLFTRMEKMGSSP 130

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           D VT                                  +AV C+L    +  G +E +  
Sbjct: 131 DRVTC---------------------------------VAVVCAL----TALGRLEDART 153

Query: 474 VFEKIPSP-NVVCFTSIMNGYS-RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
           +  ++P+P + V + ++++GY+ ++G+  E   + + M   GL P + TF  +L+   ++
Sbjct: 154 LLHRMPAPSSTVAWNAVISGYAQQSGIEHEVFGLYKDMRCWGLWPTRSTFASMLSAAANA 213

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
               EG+ V ++    +G+DA+    S +I++  + G +  A  L+    G  + +MW++
Sbjct: 214 TAFIEGRQV-HAAAVRHGLDANVFVGSSLINLYAKCGCIGDA-ILVFDCSGEKNVVMWNA 271

Query: 592 LL 593
           +L
Sbjct: 272 ML 273


>gi|357483151|ref|XP_003611862.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355513197|gb|AES94820.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 663

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 160/570 (28%), Positives = 290/570 (50%), Gaps = 43/570 (7%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            +H +++  G    +     LV   +++     A  LFD++P+ N   +N +++ +   S
Sbjct: 54  HVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIKGYSNSS 113

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            P + L +Y +M  +G+ PN  +  ++++ C+       G  +H+   KLG +  +  V 
Sbjct: 114 DPIKSLLLYRRMVCDGILPNQFTIPFVLKACAAKSCYWLGVCVHAQSFKLG-MGSHACVQ 172

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NA+++ Y ACG +  A++ FD I    ++SWNS+++ Y+      +A+ +F  MQ     
Sbjct: 173 NAILNIYVACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAVLMFREMQEVGLE 232

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN------- 363
           P + + V  L+ +++ GN   G+ +H ++   G +  S+ V +AL DMY KC        
Sbjct: 233 PDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSI-VTNALMDMYAKCGNLKCAKS 291

Query: 364 ------------------------VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
                                   +I+ ++  F   PG+++   NS++   +  G   +A
Sbjct: 292 VFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIWCHVQEGLYAEA 351

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL- 458
           V++F  M D G+  ++ TL   L + S      LG        A    F++NI +S +L 
Sbjct: 352 VDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQ------AHSYIFDNNITLSATLC 405

Query: 459 ---MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
              +D Y++CG ++ +  VF  +P  N V +  I+   + +G G+EA++M E M   G+ 
Sbjct: 406 NAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKMQASGVC 465

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD++TF  +L+ C+HSG+V  GQ  F  M   +GI  D +HY+CM+D+LGR G+L +A  
Sbjct: 466 PDEITFTGLLSACSHSGLVDTGQHYFEIMNLTFGISPDVEHYACMVDLLGRRGLLGEAIS 525

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L+++ P   D ++WS+LL +CR +GN  IG+++   L+EL   +  +Y  +SN YSE   
Sbjct: 526 LIKKMPVKPDVVVWSALLGACRTYGNLAIGKQIMKQLLELGRYNSGLYVLLSNMYSESQR 585

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           ++    I +      + +    S IE++ C
Sbjct: 586 WDDMKNIWKILDQNGIKKCRAISFIEIDGC 615



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 129/485 (26%), Positives = 235/485 (48%), Gaps = 44/485 (9%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A KLFD++P  +   +N LI G      P ++L LY  MV  GI  +  T   VL  
Sbjct: 84  LRYAHKLFDQIPQPNKFMFNHLIKGYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKA 143

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+    Y  G+ +H +   LG G +  + + ++++Y+  G    A  +FD++ ER L +W
Sbjct: 144 CAAKSCYWLGVCVHAQSFKLGMGSHACVQNAILNIYVACGLITSARRVFDDISERTLVSW 203

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+  + ++ R +E + M+ +M+  G+EP+  +   ++   +     D G+ +H H++ 
Sbjct: 204 NSMINGYSKMGRSEEAVLMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVV 263

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI----- 294
            G ++++  V NAL+D Y+ CG+L  AK  FD +   DV+SW  +++ YA++ LI     
Sbjct: 264 TG-IEIDSIVTNALMDMYAKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALE 322

Query: 295 --------------------------FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
                                      +A++LF+RM       +  + V  L+  S  G+
Sbjct: 323 FFNQMPGKNVVSWNSIIWCHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGD 382

Query: 329 VYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
           +  GKQ H Y+    FD+    S  + +A+ DMY KC  +++++ VF   P ++    N 
Sbjct: 383 LALGKQAHSYI----FDNNITLSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNV 438

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++ +L   G  K+A+EMF  M   G+  DE+T +  L A S S   + G         + 
Sbjct: 439 IIGALALHGYGKEAIEMFEKMQASGVCPDEITFTGLLSACSHSGLVDTGQ-HYFEIMNLT 497

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG---YSRNGMGRE 501
            G   ++     ++D   R G +  +  + +K+P  P+VV +++++     Y    +G++
Sbjct: 498 FGISPDVEHYACMVDLLGRRGLLGEAISLIKKMPVKPDVVVWSALLGACRTYGNLAIGKQ 557

Query: 502 ALDML 506
            +  L
Sbjct: 558 IMKQL 562



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/375 (23%), Positives = 175/375 (46%), Gaps = 47/375 (12%)

Query: 36  CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQAL 95
           C  N  LNIY         V  G + SA+++FD++  R +V++N +I+G  K    ++A+
Sbjct: 170 CVQNAILNIY---------VACGLITSARRVFDDISERTLVSWNSMINGYSKMGRSEEAV 220

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
            ++ EM   G++    T   +LSV +  G +  G  +H  ++  G  ++  + + L+D+Y
Sbjct: 221 LMFREMQEVGLEPDVFTLVGLLSVSTKHGNFDLGRFVHLHMVVTGIEIDSIVTNALMDMY 280

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSF 214
            + G    A  +FD++ ++++ +W  M+ A+      D  L  +N+M  +  V  N + +
Sbjct: 281 AKCGNLKCAKSVFDQMLDKDVVSWTCMINAYANHGLIDCALEFFNQMPGKNVVSWNSIIW 340

Query: 215 CYMVRG------------CSIGMLLDE------------------GKQLHSHVIKLGWVD 244
           C++  G            C  G++ ++                  GKQ HS++     + 
Sbjct: 341 CHVQEGLYAEAVDLFYRMCDSGVMANDTTLVAILSSCSHMGDLALGKQAHSYIFDNN-IT 399

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           ++  + NA++D Y+ CG+L  A   F  +P  + +SWN I+   A +    +A+E+F +M
Sbjct: 400 LSATLCNAIIDMYAKCGALQTAMDVFFGMPEKNAVSWNVIIGALALHGYGKEAIEMFEKM 459

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYGK 361
           Q     P   +F   L+  S +G V  G+    Y   +    G    V   + + D+ G+
Sbjct: 460 QASGVCPDEITFTGLLSACSHSGLVDTGQH---YFEIMNLTFGISPDVEHYACMVDLLGR 516

Query: 362 CNVIESSVAVFESAP 376
             ++  ++++ +  P
Sbjct: 517 RGLLGEAISLIKKMP 531



 Score = 44.3 bits (103), Expect = 0.22,   Method: Compositional matrix adjust.
 Identities = 23/97 (23%), Positives = 48/97 (49%)

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
           +L   + +H   I  G  + +     L+ +  +   +  +H++F++IP PN   F  ++ 
Sbjct: 48  SLKQLKHVHAQIILHGLATQVLTLGKLVSSSVQLRDLRYAHKLFDQIPQPNKFMFNHLIK 107

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           GYS +    ++L +   M+  G++P++ T   VL  C
Sbjct: 108 GYSNSSDPIKSLLLYRRMVCDGILPNQFTIPFVLKAC 144


>gi|255583926|ref|XP_002532711.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223527557|gb|EEF29678.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 679

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/564 (30%), Positives = 294/564 (52%), Gaps = 32/564 (5%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ++ + K   L+   K+FD +  RD+V++N LIS   + +  + AL  +  M++  +
Sbjct: 116 ANSLVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDL 175

Query: 107 KESASTFSSVLSVCSNAGFYTE---GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           + S+ T  S +  CSN   +     G QIH      G   + +  + L+ +Y  +G    
Sbjct: 176 EPSSFTLVSPVIACSNLRKHEGLRLGKQIHGYCFRNGH-WSTFTNNALMTMYANLGRLDD 234

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  LF    +RNL +WN M+ +F +  R  E L     M  EGV+P+G++   ++  CS 
Sbjct: 235 AKFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACSY 294

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
             +L  GK++H++ ++ G +  N FV +ALVD Y  CG +   ++ FD I       WN+
Sbjct: 295 LEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWNA 354

Query: 284 IVSIYADYDLIFDALELFFRM----QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +++ YA  +    AL LF  M     LC   P+  +    +  ++R  + +  + IHGYV
Sbjct: 355 MIAGYAQNEHDEKALMLFIEMVAVAGLC---PNTTTMASIVPASARCESFFSKESIHGYV 411

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K   +    +VQ+AL DMY +   +E S  +F+S   R +   N+++T  + SG   DA
Sbjct: 412 IKRDLERDR-YVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYNDA 470

Query: 400 VEMFGFM--VDEGIGL-----------DEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           + M   M   +EGI             + +TL T L     ++ A L   + +H  A+++
Sbjct: 471 LLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPG--CASLAALAKGKEIHAYAVRN 528

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
              S + V  +L+D Y++CG + LS +VF+++P  NV+ +  I+  Y  +G G EAL++ 
Sbjct: 529 ALASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKNVITWNVIVMAYGMHGNGEEALELF 588

Query: 507 EVMIQRG-----LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           + M+ +G     + P +VT + +LA C+HSGMV EG  +F+ MK  +GI+    HY+C+ 
Sbjct: 589 KDMVAKGDNVGEVKPTEVTMIAILAACSHSGMVDEGLKLFHRMKDDHGIEPGPDHYACVA 648

Query: 562 DMLGRAGILDKAEELLQQTPGGGD 585
           D+LGRAG +++A + +   P   D
Sbjct: 649 DLLGRAGKVEQAYDFINTMPSDFD 672



 Score =  164 bits (416), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 142/538 (26%), Positives = 243/538 (45%), Gaps = 44/538 (8%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSP 150
           ++A+  Y +M+  G+   +  F  VL   +       G QIH  V+  G+   ++ I + 
Sbjct: 59  REAISTYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQIHAHVVKYGYESSSVAIANS 118

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV+ Y +         +FD + ER+L +WN ++ AFC     +  L  +  M AE +EP+
Sbjct: 119 LVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQEWELALEAFRFMLAEDLEPS 178

Query: 211 GLSFCYMVRGCS-----IGMLLDEGKQLHSHVIKLG-WVDVNIFVANALVDFYSACGSLI 264
             +    V  CS      G+ L  GKQ+H +  + G W   + F  NAL+  Y+  G L 
Sbjct: 179 SFTLVSPVIACSNLRKHEGLRL--GKQIHGYCFRNGHW---STFTNNALMTMYANLGRLD 233

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
           +AK  F      ++ISWN+++S ++  +   +AL     M L   +P   +    L   S
Sbjct: 234 DAKFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVLPACS 293

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
               +  GK+IH Y  + G    +  V SAL DMY  C  + S   VF+    R     N
Sbjct: 294 YLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKTGLWN 353

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA---NLGSCRLLHC 441
           +++     + + + A+ +F  MV     +  +  +TT  A  V ASA   +  S   +H 
Sbjct: 354 AMIAGYAQNEHDEKALMLFIEMV----AVAGLCPNTTTMASIVPASARCESFFSKESIHG 409

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             IK   E +  V  +LMD YSR   +E+S  +F+ +   ++V + +++ GY  +G   +
Sbjct: 410 YVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYND 469

Query: 502 ALDMLEVM-------------IQRGLIPDKVTFLCVLAGCNHSGMVKEGQ-----LVFNS 543
           AL ML  M              Q    P+ +T + VL GC     + +G+      V N+
Sbjct: 470 ALLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAVRNA 529

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           + S   +       S ++DM  + G L+ +  +  Q P   + + W+ ++ +  +HGN
Sbjct: 530 LASEVTVG------SALVDMYAKCGCLNLSRRVFDQMP-IKNVITWNVIVMAYGMHGN 580



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 135/512 (26%), Positives = 228/512 (44%), Gaps = 26/512 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLL---LDSYCQPNPQLNIYSSNRTIDDFVKS 57
           ML+  L P   T+ +    C+++       L   +  YC  N   + +++N  +  +   
Sbjct: 170 MLAEDLEPSSFTLVSPVIACSNLRKHEGLRLGKQIHGYCFRNGHWSTFTNNALMTMYANL 229

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L+ AK LF     R+++++N +IS   +     +AL     MV  G+K    T +SVL
Sbjct: 230 GRLDDAKFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLEGVKPDGVTLASVL 289

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
             CS       G +IH   L  G  + N ++GS LVD+Y   G       +FD + ER  
Sbjct: 290 PACSYLEMLGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQVGSGRRVFDGILERKT 349

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
             WN M+  + +    ++ L ++ +M A  G+ PN  +   +V   +        + +H 
Sbjct: 350 GLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPASARCESFFSKESIHG 409

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           +VIK   ++ + +V NAL+D YS    +  +K  FD + V D++SWN++++ Y       
Sbjct: 410 YVIKRD-LERDRYVQNALMDMYSRMRKMEISKTIFDSMEVRDIVSWNTMITGYVISGCYN 468

Query: 296 DALELFFRMQLCRK-------------RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           DAL +   MQ   +             +P+  + +  L   +    +  GK+IH Y  + 
Sbjct: 469 DALLMLHEMQHANEGINKHDGDKQACFKPNSITLMTVLPGCASLAALAKGKEIHAYAVRN 528

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
                 V V SAL DMY KC  +  S  VF+  P +++   N ++ +    GN ++A+E+
Sbjct: 529 AL-ASEVTVGSALVDMYAKCGCLNLSRRVFDQMPIKNVITWNVIVMAYGMHGNGEEALEL 587

Query: 403 FGFMVDEG-----IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           F  MV +G     +   EVT+   L A S S   + G  +L H      G E        
Sbjct: 588 FKDMVAKGDNVGEVKPTEVTMIAILAACSHSGMVDEG-LKLFHRMKDDHGIEPGPDHYAC 646

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           + D   R G +E ++     +PS     F S+
Sbjct: 647 VADLLGRAGKVEQAYDFINTMPSDFDKLFVSL 678



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 120/442 (27%), Positives = 211/442 (47%), Gaps = 31/442 (7%)

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           R+ A+W   LR     +   E +  Y  M   GV P+  +F  +++  +    L+ GKQ+
Sbjct: 40  RSQASWIESLRFNTRSNLFREAISTYVDMILSGVSPDSYAFPVVLKAVTGLQDLNLGKQI 99

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+HV+K G+   ++ +AN+LV+FY  C  L +  K FD I   D++SWNS++S +     
Sbjct: 100 HAHVVKYGYESSSVAIANSLVNFYGKCSELDDVYKVFDRINERDLVSWNSLISAFCRAQE 159

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFL----NFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
              ALE F  M      PS  + V  +    N     G +  GKQIHGY  + G  H S 
Sbjct: 160 WELALEAFRFMLAEDLEPSSFTLVSPVIACSNLRKHEG-LRLGKQIHGYCFRNG--HWST 216

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
              +AL  MY     ++ +  +F+    R+L   N++++S   +    +A+    +MV E
Sbjct: 217 FTNNALMTMYANLGRLDDAKFLFKLFEDRNLISWNTMISSFSQNERFVEALMSLRYMVLE 276

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSLMDAYSRCGHI 468
           G+  D VTL++ L A S      LG+ + +H  A++SG    N  V  +L+D Y  CG +
Sbjct: 277 GVKPDGVTLASVLPACSYLEM--LGTGKEIHAYALRSGDLIENSFVGSALVDMYCNCGQV 334

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM-LEVMIQRGLIPDKVTFLCVL-- 525
               +VF+ I       + +++ GY++N    +AL + +E++   GL P+  T   ++  
Sbjct: 335 GSGRRVFDGILERKTGLWNAMIAGYAQNEHDEKALMLFIEMVAVAGLCPNTTTMASIVPA 394

Query: 526 -AGCNHSGMVKEGQLVFNSMKSVYG------IDADRQHYSCMIDMLGRAGILDKAEELLQ 578
            A C            F S +S++G      ++ DR   + ++DM  R   ++ ++ +  
Sbjct: 395 SARCES----------FFSKESIHGYVIKRDLERDRYVQNALMDMYSRMRKMEISKTIFD 444

Query: 579 QTPGGGDCMMWSSLLRSCRVHG 600
                 D + W++++    + G
Sbjct: 445 SME-VRDIVSWNTMITGYVISG 465


>gi|224141765|ref|XP_002324235.1| predicted protein [Populus trichocarpa]
 gi|222865669|gb|EEF02800.1| predicted protein [Populus trichocarpa]
          Length = 736

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 164/584 (28%), Positives = 292/584 (50%), Gaps = 40/584 (6%)

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL--YMRMGPSVRALDLFDELPER 174
           L++ SN        QIH +++  G     +  S L++       G    AL LF  +   
Sbjct: 32  LTLLSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNP 91

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           N   WN M+R       P   L  Y  M + G EPN  +F  + + C+      EGKQ+H
Sbjct: 92  NHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVH 151

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLI------------------------------ 264
           +HV+KLG ++ N FV  +L++ Y+  G L+                              
Sbjct: 152 AHVLKLG-LEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAVSFTALITGYASKGFL 210

Query: 265 -EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
            EA++ FD IPV DV+SWN+++S YA    + +A+  F  M+  +  P++ + +  L+  
Sbjct: 211 DEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSAC 270

Query: 324 SRTGN-VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
           +++G+ +  G  +  ++   G    ++ + + L DMY KC  +E +  +FE    +++  
Sbjct: 271 AQSGSSLQLGNWVRSWIEDRGLG-SNIRLVNGLIDMYVKCGDLEEASNLFEKIQDKNVVS 329

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
            N ++    H    K+A+ +F  M+   I  ++VT  + L A +   + +LG  + +H  
Sbjct: 330 WNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDLG--KWVHAY 387

Query: 443 AIKS--GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500
             K+    ++ +A+  SL+D Y++CG + ++ ++F+ + + ++  + ++++G++ +G   
Sbjct: 388 VDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGFAMHGHTD 447

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
            AL +   M   G +PD +TF+ VL  C H+G++  G+  F+SM   Y +     HY CM
Sbjct: 448 TALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPKLPHYGCM 507

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620
           ID+ GRAG+ D+AE L++      D  +W SLL +CR+H    +   VA  L ELEP + 
Sbjct: 508 IDLFGRAGLFDEAETLVKNMEMKPDGAIWCSLLGACRIHRRIELAESVAKHLFELEPENP 567

Query: 621 AVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           + Y  +SN Y+  G +E   +IR      ++ +  G S IEV+S
Sbjct: 568 SAYVLLSNIYAGAGRWEDVAKIRTRLNDNRMKKVPGCSSIEVDS 611



 Score =  164 bits (414), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 112/410 (27%), Positives = 185/410 (45%), Gaps = 34/410 (8%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G L+ A  LF  +   + V +N +I G      P  AL  Y  M+S G + +  TF S+ 
Sbjct: 76  GDLSYALSLFKTIRNPNHVIWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIF 135

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV--------------- 162
             C+      EG Q+H  VL LG   N ++ + L+++Y + G  V               
Sbjct: 136 KSCTKIRGAHEGKQVHAHVLKLGLEHNAFVHTSLINMYAQNGELVNARLVFDKSSMRDAV 195

Query: 163 ----------------RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
                            A +LFDE+P R++ +WN M+  + +  R +E +  + +M+   
Sbjct: 196 SFTALITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAK 255

Query: 207 VEPNGLSFCYMVRGCSI-GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           V PN  +   ++  C+  G  L  G  + S +   G +  NI + N L+D Y  CG L E
Sbjct: 256 VTPNVSTMLSVLSACAQSGSSLQLGNWVRSWIEDRG-LGSNIRLVNGLIDMYVKCGDLEE 314

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A   F+ I   +V+SWN ++  Y       +AL LF RM      P+  +F+  L   + 
Sbjct: 315 ASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACAN 374

Query: 326 TGNVYFGKQIHGYVTK-LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
            G +  GK +H YV K +     +V + ++L DMY KC  +  +  +F+    +SL   N
Sbjct: 375 LGALDLGKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWN 434

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           ++++     G+   A+ +F  M  EG   D++T    L A   +   +LG
Sbjct: 435 AMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLG 484



 Score =  150 bits (380), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 94/342 (27%), Positives = 173/342 (50%), Gaps = 15/342 (4%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I  +   G L+ A++LFDE+P RD+V++N +ISG  +    ++A+  ++EM    +  + 
Sbjct: 201 ITGYASKGFLDEARELFDEIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNV 260

Query: 111 STFSSVLSVCSNAGFYTE-GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           ST  SVLS C+ +G   + G  +   +   G G N+ + + L+D+Y++ G    A +LF+
Sbjct: 261 STMLSVLSACAQSGSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYVKCGDLEEASNLFE 320

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           ++ ++N+ +WN+M+  +  +S   E L ++ +M    ++PN ++F  ++  C+    LD 
Sbjct: 321 KIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLSILPACANLGALDL 380

Query: 230 GKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           GK +H++V K +  +   + +  +L+D Y+ CG L  AK+ FD +    + +WN+++S +
Sbjct: 381 GKWVHAYVDKNMKSMKNTVALWTSLIDMYAKCGDLAVAKRIFDCMNTKSLATWNAMISGF 440

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT-----GNVYFGKQIHGYVTKLG 343
           A +     AL LF RM      P   +FV  L           G  YF   I  Y     
Sbjct: 441 AMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGRRYFSSMIQDYKVSPK 500

Query: 344 FDHGSVHVQSALTDMYGKCNVI---ESSVAVFESAPGRSLEC 382
             H        + D++G+  +    E+ V   E  P  ++ C
Sbjct: 501 LPH-----YGCMIDLFGRAGLFDEAETLVKNMEMKPDGAIWC 537



 Score =  103 bits (256), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 76/276 (27%), Positives = 133/276 (48%), Gaps = 14/276 (5%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQ-----LNIYSSNRTIDDFV 55
           M   K+ P V T+ ++   C       SSL L ++ +   +      NI   N  ID +V
Sbjct: 251 MRRAKVTPNVSTMLSVLSACAQS---GSSLQLGNWVRSWIEDRGLGSNIRLVNGLIDMYV 307

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K G L  A  LF+++  +++V++N++I G       K+AL L+  M+   I  +  TF S
Sbjct: 308 KCGDLEEASNLFEKIQDKNVVSWNVMIGGYTHMSCYKEALGLFRRMMQSNIDPNDVTFLS 367

Query: 116 VLSVCSNAGFYTEGIQIHCRV----LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           +L  C+N G    G  +H  V     S+   + L+  + L+D+Y + G    A  +FD +
Sbjct: 368 ILPACANLGALDLGKWVHAYVDKNMKSMKNTVALW--TSLIDMYAKCGDLAVAKRIFDCM 425

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
             ++LATWN M+  F      D  L ++++M +EG  P+ ++F  ++  C    LL  G+
Sbjct: 426 NTKSLATWNAMISGFAMHGHTDTALGLFSRMTSEGFVPDDITFVGVLTACKHAGLLSLGR 485

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
           +  S +I+   V   +     ++D +   G   EA+
Sbjct: 486 RYFSSMIQDYKVSPKLPHYGCMIDLFGRAGLFDEAE 521



 Score = 44.3 bits (103), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 50/241 (20%), Positives = 107/241 (44%), Gaps = 7/241 (2%)

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH--QVFEKIPSPNVV 484
           +S    L + + +H   IK+G  +       L++  +   H +LS+   +F+ I +PN V
Sbjct: 35  LSNCKTLQTLKQIHSQIIKTGLHNTHFALSKLIEFCAVSPHGDLSYALSLFKTIRNPNHV 94

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +  ++ G S +     AL+    MI  G  P++ TF  +   C       EG+ V   +
Sbjct: 95  IWNHMIRGLSSSESPFLALEYYVHMISSGTEPNEYTFPSIFKSCTKIRGAHEGKQVHAHV 154

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
             + G++ +   ++ +I+M  + G L  A  +  ++    D + +++L+      G    
Sbjct: 155 LKL-GLEHNAFVHTSLINMYAQNGELVNARLVFDKS-SMRDAVSFTALITGYASKGFLDE 212

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            R + +   E+   D   ++ + + Y++ G  E +M   E     K+T ++   L  +++
Sbjct: 213 ARELFD---EIPVRDVVSWNAMISGYAQSGRVEEAMAFFEEMRRAKVTPNVSTMLSVLSA 269

Query: 665 C 665
           C
Sbjct: 270 C 270


>gi|222613253|gb|EEE51385.1| hypothetical protein OsJ_32436 [Oryza sativa Japonica Group]
          Length = 863

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/658 (26%), Positives = 322/658 (48%), Gaps = 5/658 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T   L  +C+++  LS  + + +   +   ++++ + +  +D + K   L+ A   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  MP R+ V++   I+GC +     + L L+ EM   G+  S  +++S    C+     
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G Q+H   +   F  +  +G+ +VD+Y +      A   F  LP   + T N M+   
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                  E + ++  M    +  + +S   +   C+      +G+Q+H   IK G+ DV+
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF-DVD 385

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           I V NA++D Y  C +L+EA   F  +   D +SWN+I++         D +  F  M  
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +P   ++   L   +   ++ +G  +H  V K G    +  V S + DMY KC +I+
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF-VASTVVDMYCKCGIID 504

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  + +   G+ +   N++++    +   ++A + F  M+D G+  D  T +T L   +
Sbjct: 505 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 564

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
             A+  LG  + +H   IK     +  +S +L+D Y++CG +  S  VFEK+   + V +
Sbjct: 565 NLATIELG--KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++ GY+ +G+G EAL M E M +  ++P+  TF+ VL  C+H G+  +G   F+ M +
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 682

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            Y ++   +H++CM+D+LGR+    +A + +   P   D ++W +LL  C++  +  I  
Sbjct: 683 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 742

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             A+ ++ L+P D +VY  +SN Y+E G++    + R      +L ++ G S IEV S
Sbjct: 743 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 800



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 148/561 (26%), Positives = 278/561 (49%), Gaps = 6/561 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ +  S N  +  +  +G +++A  LFD MP  D+V++N L+SG  +    ++++ L+ 
Sbjct: 79  PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 138

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G+    +TF+ +L  CS     + G+Q+H   +  G  +++  GS LVD+Y +  
Sbjct: 139 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               AL  F  +PERN  +W   +    +  +    L ++ +M+  G+  +  S+    R
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+ G+QLH+H IK  +    + V  A+VD Y+   SL +A+++F  +P   V 
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRV-VGTAIVDVYAKANSLTDARRAFFGLPNHTVE 317

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           + N+++       L  +A+ LF  M     R  + S     +  + T   + G+Q+H   
Sbjct: 318 TSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLA 377

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GFD   + V +A+ D+YGKC  +  +  +F+    +     N+++ +L  +G+  D 
Sbjct: 378 IKSGFDV-DICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 436

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +  F  M+  G+  D+ T  + LKA +   S   G   ++H   IKSG  S+  V+ +++
Sbjct: 437 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG--LMVHDKVIKSGLGSDAFVASTVV 494

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +CG I+ + ++ ++I    VV + +I++G+S N    EA      M+  GL PD  
Sbjct: 495 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHF 554

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF  VL  C +   ++ G+ +   +     +D D    S ++DM  + G +  +  + ++
Sbjct: 555 TFATVLDTCANLATIELGKQIHGQIIKQEMLD-DEYISSTLVDMYAKCGDMPDSLLVFEK 613

Query: 580 TPGGGDCMMWSSLLRSCRVHG 600
                D + W++++    +HG
Sbjct: 614 VE-KRDFVSWNAMICGYALHG 633



 Score =  183 bits (464), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 146/589 (24%), Positives = 279/589 (47%), Gaps = 46/589 (7%)

Query: 112 TFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           TFS V   C+ AG      G   H R++  GF  N ++ + L+ +Y R   +  A  +FD
Sbjct: 17  TFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPNAFVSNCLLQMYARCAGAACARRVFD 76

Query: 170 ELPERNLATWNLMLRA-------------------------------FCELSRPDEVLRM 198
            +P R+  +WN ML A                               +C+     E + +
Sbjct: 77  AMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDL 136

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           + +M   GV P+  +F  +++ CS    L  G Q+H+  +K G +++++   +ALVD Y 
Sbjct: 137 FVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYG 195

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            C SL +A   F  +P  + +SW + ++     +     LELF  MQ      S  S+  
Sbjct: 196 KCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYAS 255

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
                +    +  G+Q+H +  K  F    V V +A+ D+Y K N +  +   F   P  
Sbjct: 256 AFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV-VGTAIVDVYAKANSLTDARRAFFGLPNH 314

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           ++E  N++M  L+ +G   +A+ +F FM+   I  D V+LS    A + +     G  + 
Sbjct: 315 TVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG--QQ 372

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +HC AIKSGF+ +I V+ +++D Y +C  +  ++ +F+ +   + V + +I+    +NG 
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHY 557
             + +     M++ G+ PD  T+  VL  C     ++ G +V +  +KS  G+ +D    
Sbjct: 433 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS--GLGSDAFVA 490

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME--L 615
           S ++DM  + GI+D+A++L  +  GG   + W+++L    ++      ++  + +++  L
Sbjct: 491 STVVDMYCKCGIIDEAQKLHDRI-GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGL 549

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
           +P D   ++ V +  + +   E+  QI    + +++  D  I  +L+++
Sbjct: 550 KP-DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDM 597


>gi|297610920|ref|NP_001065364.2| Os10g0558600 [Oryza sativa Japonica Group]
 gi|255679629|dbj|BAF27201.2| Os10g0558600 [Oryza sativa Japonica Group]
          Length = 863

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/658 (26%), Positives = 322/658 (48%), Gaps = 5/658 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T   L  +C+++  LS  + + +   +   ++++ + +  +D + K   L+ A   
Sbjct: 147 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 206

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  MP R+ V++   I+GC +     + L L+ EM   G+  S  +++S    C+     
Sbjct: 207 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 266

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G Q+H   +   F  +  +G+ +VD+Y +      A   F  LP   + T N M+   
Sbjct: 267 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 326

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                  E + ++  M    +  + +S   +   C+      +G+Q+H   IK G+ DV+
Sbjct: 327 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF-DVD 385

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           I V NA++D Y  C +L+EA   F  +   D +SWN+I++         D +  F  M  
Sbjct: 386 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 445

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +P   ++   L   +   ++ +G  +H  V K G    +  V S + DMY KC +I+
Sbjct: 446 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF-VASTVVDMYCKCGIID 504

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  + +   G+ +   N++++    +   ++A + F  M+D G+  D  T +T L   +
Sbjct: 505 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 564

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
             A+  LG  + +H   IK     +  +S +L+D Y++CG +  S  VFEK+   + V +
Sbjct: 565 NLATIELG--KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 622

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++ GY+ +G+G EAL M E M +  ++P+  TF+ VL  C+H G+  +G   F+ M +
Sbjct: 623 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 682

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            Y ++   +H++CM+D+LGR+    +A + +   P   D ++W +LL  C++  +  I  
Sbjct: 683 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 742

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             A+ ++ L+P D +VY  +SN Y+E G++    + R      +L ++ G S IEV S
Sbjct: 743 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 800



 Score =  219 bits (558), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 148/561 (26%), Positives = 278/561 (49%), Gaps = 6/561 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ +  S N  +  +  +G +++A  LFD MP  D+V++N L+SG  +    ++++ L+ 
Sbjct: 79  PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 138

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G+    +TF+ +L  CS     + G+Q+H   +  G  +++  GS LVD+Y +  
Sbjct: 139 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 198

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               AL  F  +PERN  +W   +    +  +    L ++ +M+  G+  +  S+    R
Sbjct: 199 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 258

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+ G+QLH+H IK  +    + V  A+VD Y+   SL +A+++F  +P   V 
Sbjct: 259 SCAAMSCLNTGRQLHAHAIKNKFSSDRV-VGTAIVDVYAKANSLTDARRAFFGLPNHTVE 317

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           + N+++       L  +A+ LF  M     R  + S     +  + T   + G+Q+H   
Sbjct: 318 TSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLA 377

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GFD   + V +A+ D+YGKC  +  +  +F+    +     N+++ +L  +G+  D 
Sbjct: 378 IKSGFDV-DICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 436

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +  F  M+  G+  D+ T  + LKA +   S   G   ++H   IKSG  S+  V+ +++
Sbjct: 437 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG--LMVHDKVIKSGLGSDAFVASTVV 494

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +CG I+ + ++ ++I    VV + +I++G+S N    EA      M+  GL PD  
Sbjct: 495 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHF 554

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF  VL  C +   ++ G+ +   +     +D D    S ++DM  + G +  +  + ++
Sbjct: 555 TFATVLDTCANLATIELGKQIHGQIIKQEMLD-DEYISSTLVDMYAKCGDMPDSLLVFEK 613

Query: 580 TPGGGDCMMWSSLLRSCRVHG 600
                D + W++++    +HG
Sbjct: 614 VE-KRDFVSWNAMICGYALHG 633



 Score =  181 bits (458), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 145/589 (24%), Positives = 278/589 (47%), Gaps = 46/589 (7%)

Query: 112 TFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           TFS V   C+ AG      G   H R++  GF    ++ + L+ +Y R   +  A  +FD
Sbjct: 17  TFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFD 76

Query: 170 ELPERNLATWNLMLRA-------------------------------FCELSRPDEVLRM 198
            +P R+  +WN ML A                               +C+     E + +
Sbjct: 77  AMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDL 136

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           + +M   GV P+  +F  +++ CS    L  G Q+H+  +K G +++++   +ALVD Y 
Sbjct: 137 FVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYG 195

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            C SL +A   F  +P  + +SW + ++     +     LELF  MQ      S  S+  
Sbjct: 196 KCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYAS 255

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
                +    +  G+Q+H +  K  F    V V +A+ D+Y K N +  +   F   P  
Sbjct: 256 AFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV-VGTAIVDVYAKANSLTDARRAFFGLPNH 314

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           ++E  N++M  L+ +G   +A+ +F FM+   I  D V+LS    A + +     G  + 
Sbjct: 315 TVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG--QQ 372

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +HC AIKSGF+ +I V+ +++D Y +C  +  ++ +F+ +   + V + +I+    +NG 
Sbjct: 373 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 432

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHY 557
             + +     M++ G+ PD  T+  VL  C     ++ G +V +  +KS  G+ +D    
Sbjct: 433 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS--GLGSDAFVA 490

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME--L 615
           S ++DM  + GI+D+A++L  +  GG   + W+++L    ++      ++  + +++  L
Sbjct: 491 STVVDMYCKCGIIDEAQKLHDRI-GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGL 549

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
           +P D   ++ V +  + +   E+  QI    + +++  D  I  +L+++
Sbjct: 550 KP-DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDM 597


>gi|356510389|ref|XP_003523921.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g11290-like [Glycine max]
          Length = 818

 Score =  264 bits (675), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 158/619 (25%), Positives = 324/619 (52%), Gaps = 6/619 (0%)

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE 108
           + I  F K G  + A ++F+ +  +  V Y++++ G  K      AL  +  M+   ++ 
Sbjct: 84  KVISLFCKFGSNSEAARVFEHVELKLDVLYHIMLKGYAKNSSLGDALCFFLRMMCDEVRL 143

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
               ++ +L +C       +G +IH  +++ GF  NL++ + ++ LY +      A  +F
Sbjct: 144 VVGDYACLLQLCGENLDLKKGREIHGLIITNGFESNLFVMTAVMSLYAKCRQIDNAYKMF 203

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           + +  ++L +W  ++  + +       L++  +M+  G +P+ ++   ++   +    L 
Sbjct: 204 ERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQEAGQKPDSVTLVSILPAVADMKALR 263

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G+ +H +  + G+  + + V NAL+D Y  CGS   A+  F  +    V+SWN+++   
Sbjct: 264 IGRSIHGYAFRSGFESL-VNVTNALLDMYFKCGSARIARLVFKGMRSKTVVSWNTMIDGC 322

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           A      +A   F +M    + P+  + +  L   +  G++  G  +H  + KL  D  +
Sbjct: 323 AQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACANLGDLERGWFVHKLLDKLKLD-SN 381

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           V V ++L  MY KC  ++ + ++F +    ++   N+++     +G +K+A+ +F  M  
Sbjct: 382 VSVMNSLISMYSKCKRVDIAASIFNNLEKTNV-TWNAMILGYAQNGCVKEALNLFCMMQS 440

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           +GI LD  TL   + AL+   S N    + +H  A+++  ++N+ VS +L+D Y++CG I
Sbjct: 441 QGIKLDCFTLVGVITALA-DFSVNR-QAKWIHGLAVRACMDNNVFVSTALVDMYAKCGAI 498

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           + + ++F+ +   +V+ + ++++GY  +G+G+E LD+   M +  + P+ +TFL V++ C
Sbjct: 499 KTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDLFNEMQKGAVKPNDITFLSVISAC 558

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +HSG V+EG L+F SM+  Y ++    HYS M+D+LGRAG LD A   +Q+ P      +
Sbjct: 559 SHSGFVEEGLLLFKSMQEDYYLEPTMDHYSAMVDLLGRAGQLDDAWNFIQEMPIKPGISV 618

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
             ++L +C++H N  +G + A  L +L+P +   +  ++N Y+    ++   ++R     
Sbjct: 619 LGAMLGACKIHKNVELGEKAAQKLFKLDPDEGGYHVLLANIYASNSMWDKVAKVRTAMED 678

Query: 649 RKLTRDIGHSLIEV-NSCH 666
           + L +  G S +E+ N  H
Sbjct: 679 KGLHKTPGCSWVELRNEIH 697



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 103/439 (23%), Positives = 204/439 (46%), Gaps = 8/439 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++     +  + K   +++A K+F+ M  +D+V++  L++G  +  H K+AL L  +M 
Sbjct: 179 NLFVMTAVMSLYAKCRQIDNAYKMFERMQHKDLVSWTTLVAGYAQNGHAKRALQLVLQMQ 238

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G K  + T  S+L   ++      G  IH      GF   + + + L+D+Y + G + 
Sbjct: 239 EAGQKPDSVTLVSILPAVADMKALRIGRSIHGYAFRSGFESLVNVTNALLDMYFKCGSAR 298

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  +  + + +WN M+    +    +E    + KM  EG  P  ++   ++  C+
Sbjct: 299 IARLVFKGMRSKTVVSWNTMIDGCAQNGESEEAFATFLKMLDEGEVPTRVTMMGVLLACA 358

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ G  +H  + KL  +D N+ V N+L+  YS C  +  A   F+ +   +V +WN
Sbjct: 359 NLGDLERGWFVHKLLDKLK-LDSNVSVMNSLISMYSKCKRVDIAASIFNNLEKTNV-TWN 416

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  YA    + +AL LF  MQ    +    + V  +   +        K IHG   + 
Sbjct: 417 AMILGYAQNGCVKEALNLFCMMQSQGIKLDCFTLVGVITALADFSVNRQAKWIHGLAVRA 476

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D+ +V V +AL DMY KC  I+++  +F+    R +   N+++      G  K+ +++
Sbjct: 477 CMDN-NVFVSTALVDMYAKCGAIKTARKLFDMMQERHVITWNAMIDGYGTHGVGKETLDL 535

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF--ESNIAVSCSLMD 460
           F  M    +  +++T  + + A S S     G   LL   +++  +  E  +    +++D
Sbjct: 536 FNEMQKGAVKPNDITFLSVISACSHSGFVEEG---LLLFKSMQEDYYLEPTMDHYSAMVD 592

Query: 461 AYSRCGHIELSHQVFEKIP 479
              R G ++ +    +++P
Sbjct: 593 LLGRAGQLDDAWNFIQEMP 611


>gi|14587213|dbj|BAB61147.1| PPR-repeat protein-like [Oryza sativa Japonica Group]
 gi|125570436|gb|EAZ11951.1| hypothetical protein OsJ_01824 [Oryza sativa Japonica Group]
          Length = 735

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 184/632 (29%), Positives = 325/632 (51%), Gaps = 19/632 (3%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALY 96
           N  +N YSS       +    L +A  +FD++P  ARD+ ++N L++     R P  AL 
Sbjct: 51  NSLINFYSS-------LPRPLLAAAFAVFDDIPPAARDVTSWNSLLNPLSGHR-PLDALS 102

Query: 97  LYDEMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDL 154
            +  M+S   +  S  +F++  +  + A     G   H     +   + N+Y+ + L+++
Sbjct: 103 RFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPSAVSNVYVCTSLLNM 162

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-GVEPNGLS 213
           Y ++G    A  +FD +P+RN  +W+ M+  +      +E   ++  M  E   E +   
Sbjct: 163 YCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFRLMLEECPSEKSEFV 222

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
              ++   S+ + L  G+Q+H  ++K G +D  + V N+LV  Y+  G +  A   F+  
Sbjct: 223 ATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDF-VSVENSLVTMYAKAGCMGAAFHVFESS 281

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              + I+W+++++ YA       A+ +F +M      P+  +FV  LN +S  G +  GK
Sbjct: 282 RERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVGVLNASSDLGALAVGK 341

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           Q HG + KLGF+   ++V+SAL DMY KC  I  +   F+      +    ++++  + +
Sbjct: 342 QAHGLMVKLGFEV-QIYVKSALVDMYAKCGCIADAKEGFDQLYEVDIVLWTAMVSGHVQN 400

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G  ++A+ ++  M  EGI   + T+++ L+A +  A+   G  + LH   +K G      
Sbjct: 401 GEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPG--KQLHTQIVKYGLGLGAP 458

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V  +L   YS+CG++E    VF +IP  +V+ + SI++G+S+NG G  ALD+ E M   G
Sbjct: 459 VGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCGNGALDLFEEMKMEG 518

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
            IPD +TF+ +L  C+H G+V  G   F+ M   YG+     HY+CM+D+L RAG+L +A
Sbjct: 519 TIPDNITFINILCACSHMGLVDRGWEYFSLMTKDYGLTPRLDHYACMVDILSRAGMLKEA 578

Query: 574 EELLQQ-TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           ++ ++  T   G C +W  +L +CR   +  +G      LMEL   D + Y  +SN Y+ 
Sbjct: 579 KDFIESITIDHGTC-LWRIVLGACRSLRDFDVGAYAGERLMELGTGDSSAYILLSNIYAS 637

Query: 633 IGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             ++    ++R     R + +D G S +E+NS
Sbjct: 638 QRKWNDVERVRHLMRLRGVNKDPGCSWVELNS 669



 Score =  166 bits (419), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 123/460 (26%), Positives = 216/460 (46%), Gaps = 4/460 (0%)

Query: 38  PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL 97
           P+   N+Y     ++ + K G ++ A+++FD MP R+  +++ +++G    +  ++A  L
Sbjct: 147 PSAVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDL 206

Query: 98  YDEMVSHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           +  M+     E +    ++VLS  S       G Q+H  ++  G    + + + LV +Y 
Sbjct: 207 FRLMLEECPSEKSEFVATAVLSAVSVPLGLLMGEQMHGLIVKDGLLDFVSVENSLVTMYA 266

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A  +F+   ERN  TW+ M+  + +    D  + M+++M A G  P   +F  
Sbjct: 267 KAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVG 326

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
           ++   S    L  GKQ H  ++KLG+ +V I+V +ALVD Y+ CG + +AK+ FD +   
Sbjct: 327 VLNASSDLGALAVGKQAHGLMVKLGF-EVQIYVKSALVDMYAKCGCIADAKEGFDQLYEV 385

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           D++ W ++VS +       +AL L+ RM      PS  +    L   +    +  GKQ+H
Sbjct: 386 DIVLWTAMVSGHVQNGEHEEALTLYARMDKEGIIPSKSTIASGLRACAGIAALEPGKQLH 445

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             + K G   G+  V SAL+ MY KC  +E  ++VF   P R +   NS+++    +G  
Sbjct: 446 TQIVKYGLGLGAP-VGSALSTMYSKCGNLEDGMSVFRRIPDRDVIAWNSIISGFSQNGCG 504

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
             A+++F  M  EG   D +T    L A S     + G            G    +    
Sbjct: 505 NGALDLFEEMKMEGTIPDNITFINILCACSHMGLVDRG-WEYFSLMTKDYGLTPRLDHYA 563

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
            ++D  SR G ++ +    E I   +  C   I+ G  R+
Sbjct: 564 CMVDILSRAGMLKEAKDFIESITIDHGTCLWRIVLGACRS 603



 Score =  101 bits (252), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 172/370 (46%), Gaps = 12/370 (3%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGS--LIEAKKSFDFIP--VDDVISWNSIV 285
           G+ LH+  +K G    +  VAN+L++FYS+     L  A   FD IP    DV SWNS++
Sbjct: 31  GEALHAWALKSG-AASHAPVANSLINFYSSLPRPLLAAAFAVFDDIPPAARDVTSWNSLL 89

Query: 286 SIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +  + +  + DAL  F  M       PS  SF      A+R  +   G   H    K+  
Sbjct: 90  NPLSGHRPL-DALSRFRSMLSSSTVLPSPHSFAAAFTAAARAASAPAGTAAHALACKIPS 148

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
              +V+V ++L +MY K  ++  +  VF+  P R+    ++++         ++A ++F 
Sbjct: 149 AVSNVYVCTSLLNMYCKLGIVSDARRVFDGMPQRNSFSWSTMVAGYAAEKCSEEAFDLFR 208

Query: 405 FMVDEGIG-LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
            M++E      E   +  L A+SV     +G    +H   +K G    ++V  SL+  Y+
Sbjct: 209 LMLEECPSEKSEFVATAVLSAVSVPLGLLMG--EQMHGLIVKDGLLDFVSVENSLVTMYA 266

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           + G +  +  VFE     N + +++++ GY++NG    A+ M   M   G  P + TF+ 
Sbjct: 267 KAGCMGAAFHVFESSRERNSITWSAMITGYAQNGEADSAVSMFSQMHAAGFTPTEFTFVG 326

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL   +  G +  G+     M  + G +      S ++DM  + G +  A+E   Q    
Sbjct: 327 VLNASSDLGALAVGKQAHGLMVKL-GFEVQIYVKSALVDMYAKCGCIADAKEGFDQLY-E 384

Query: 584 GDCMMWSSLL 593
            D ++W++++
Sbjct: 385 VDIVLWTAMV 394


>gi|224108621|ref|XP_002314911.1| predicted protein [Populus trichocarpa]
 gi|222863951|gb|EEF01082.1| predicted protein [Populus trichocarpa]
          Length = 743

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 175/612 (28%), Positives = 308/612 (50%), Gaps = 73/612 (11%)

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           +C      T+  ++HC ++        ++ + L++ Y ++G    A  +FD++P+ N  +
Sbjct: 14  LCCETRNQTQAKKLHCLIIKSLTNPETFLYNNLINAYSKLGNITYARHVFDKMPQPNSFS 73

Query: 179 WNLMLRAFC---ELSRPDEV----------------------------LRMYNKMKAEGV 207
           WN ML A+    +LS   E+                            ++ YN M  +GV
Sbjct: 74  WNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYNSMMKDGV 133

Query: 208 -EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266
              N ++F  M+   S    +D G+Q+H  ++K G+    +FV ++LVD Y+  G +  A
Sbjct: 134 LNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGF-GAYVFVGSSLVDMYAKMGLVSVA 192

Query: 267 KKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR------------ 314
            + FD +   +V+ +N++++      ++ D+  LF  M   ++R SI             
Sbjct: 193 SQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGM---KERDSISWTTMITGLIQNG 249

Query: 315 ----------------------SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
                                 +F   L        +  GK+IH  + + G++H +V V 
Sbjct: 250 LEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGYNH-NVFVG 308

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           SAL DMY KC  +  + AVF+    +++    +++     +G  ++AV +F  M   GI 
Sbjct: 309 SALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRNGIE 368

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D+ TL + + + +  AS   G+    HC A+ SG  S I VS +L+  Y +CG IE S+
Sbjct: 369 PDDFTLGSVISSCANLASLEEGA--QFHCQALVSGLISFITVSNALITLYGKCGSIEDSN 426

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           Q+F+++   + V +T++++GY++ G   E +D+ E M+ +GL PD VTF+ VL+ C+ +G
Sbjct: 427 QLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSRAG 486

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
           +V+ GQ  F SM   +GI     HY+CMID+ GRAG L++A+  + + P   D + W++L
Sbjct: 487 LVERGQQYFESMLKDHGIIPFSDHYTCMIDLFGRAGRLEEAKNFINKMPFSPDSIGWATL 546

Query: 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652
           L SCR++GNE IG+  A  L+EL+P + A Y  +S+ Y+  G++    Q+R     +   
Sbjct: 547 LSSCRLYGNEEIGKWAAESLLELDPQNPAGYILLSSIYAAKGKWSNVAQLRRGMREKGAR 606

Query: 653 RDIGHSLIEVNS 664
           ++ G S I+  S
Sbjct: 607 KEPGFSWIKYKS 618



 Score =  175 bits (444), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 132/503 (26%), Positives = 236/503 (46%), Gaps = 39/503 (7%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ N +S N  +  + KSG L++ +++F  MP RD V++N LISG   +    +A+  Y+
Sbjct: 67  PQPNSFSWNTMLSAYSKSGDLSTMQEIFSIMPNRDGVSWNSLISGYVCYGSVVEAVKTYN 126

Query: 100 EMVSHGIKE-SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
            M+  G+   +  TFS++L + S+ G    G QIH +++  GFG  +++GS LVD+Y +M
Sbjct: 127 SMMKDGVLNLNRITFSTMLLLVSSQGCVDLGRQIHGQIVKFGFGAYVFVGSSLVDMYAKM 186

Query: 159 GPSVRALDLFDELPERNLATWNLML-------------RAFCELSRPD------------ 193
           G    A  +FDE+ ERN+  +N M+             R F  +   D            
Sbjct: 187 GLVSVASQVFDEVQERNVVMYNTMITGLLRSGMVKDSKRLFHGMKERDSISWTTMITGLI 246

Query: 194 ------EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                 E + ++  M+ EG+  +  +F  ++  C     L EGK++H+ +I+ G+ + N+
Sbjct: 247 QNGLEAEAMDLFRDMRQEGMAMDQYTFGSVLTACGGLRALKEGKEIHTLIIRSGY-NHNV 305

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV +ALVD Y  C S+  A+  F  +   +V+SW +++  Y       +A+ +F  MQ  
Sbjct: 306 FVGSALVDMYCKCRSVRYAEAVFKRMANKNVVSWTAMLVGYGQNGFSEEAVRVFCDMQRN 365

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P   +    ++  +   ++  G Q H      G     + V +AL  +YGKC  IE 
Sbjct: 366 GIEPDDFTLGSVISSCANLASLEEGAQFHCQALVSGL-ISFITVSNALITLYGKCGSIED 424

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           S  +F+    R      +L++     G   + +++F  M+ +G+  D VT    L A S 
Sbjct: 425 SNQLFDEMSFRDEVSWTALVSGYAQFGKANETIDLFERMLVQGLKPDAVTFIAVLSACSR 484

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCF 486
           +     G                +   +C ++D + R G +E +     K+P SP+ + +
Sbjct: 485 AGLVERGQQYFESMLKDHGIIPFSDHYTC-MIDLFGRAGRLEEAKNFINKMPFSPDSIGW 543

Query: 487 TSIMNG---YSRNGMGREALDML 506
            ++++    Y    +G+ A + L
Sbjct: 544 ATLLSSCRLYGNEEIGKWAAESL 566


>gi|218190567|gb|EEC72994.1| hypothetical protein OsI_06907 [Oryza sativa Indica Group]
          Length = 711

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 169/627 (26%), Positives = 322/627 (51%), Gaps = 13/627 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++  +  I  + +   L S+  +F  MP ++ V++  +ISG       +  L+L+  M+
Sbjct: 47  TVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMM 106

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               K +  TF+++ SVC+       G  +H   + +GF   +++ + L+ +Y + G   
Sbjct: 107 LSSCKPNDITFATLFSVCTKHALLALGRSVHALQMRMGFHSYVHVSNALLSMYAKCGCIE 166

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F  +  ++L +WN ++    +       L +  +M+ + + P+ LSF  ++  C 
Sbjct: 167 EAQFIFGCIACKDLVSWNAIIFGCSQYVLAKHCLDLLKEMERQHIVPDALSFLGVLSSCR 226

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF--IPVDDVIS 280
              L++EG+     +I+ G +   +   + +VD     G L EA        IP + VI 
Sbjct: 227 HARLVEEGRHCFKTMIEHG-IKPGLDHYSCMVDLLGRAGLLEEAWDLIQTMSIPPNAVI- 284

Query: 281 WNSIVS---IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF--GKQI 335
           W S++    ++ +  +   A E   +++  +   S    +     +S      F  G Q+
Sbjct: 285 WGSLLGSCRVHGNISIGIQAAEHRLKLEPGKGETSTDQSILAAAMSSCADRQMFTQGTQL 344

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG + K+G D  +V + S+L  +Y +C+ +ESS  VF++ P ++     ++++       
Sbjct: 345 HGLLVKVGCD-STVFIGSSLITLYSRCSQLESSYLVFQTMPTKNTVSWTAMISGFALHNR 403

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
           ++  + +F  M       +++T +T     +  A   LG  + +H   ++ GF S + VS
Sbjct: 404 VEPCLHLFASMRLSSCKPNDITFATLFSVCTNHALLALG--KSVHALQMRMGFHSYVHVS 461

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +L+  Y++CG I+ +  +F  I   ++V + +++ G S+ G+ +  LD+L+ M ++ ++
Sbjct: 462 NALLSMYAKCGCIDEAQSIFGFIACKDLVSWNAMIFGCSQYGLAKHCLDLLKEMERQHIV 521

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD ++FL VL+ C H+ +V+EG+  F +M   +GI     HYSCM+D+LGRAG+L++A +
Sbjct: 522 PDALSFLGVLSSCRHARLVEEGRHCFKTMIE-HGIKPGLDHYSCMVDLLGRAGLLEEAWD 580

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           L+Q      + ++W SLL SCRVHGN  IG + A   ++LEP   A + Q++N Y+ IG 
Sbjct: 581 LIQTMSIPPNAVIWGSLLGSCRVHGNISIGIQAAEHRLKLEPGCAATHIQLANLYATIGC 640

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           +    ++R    AR L  +IG S IEV
Sbjct: 641 WSDVARVRMAMKARGLKTNIGCSWIEV 667



 Score =  168 bits (425), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 120/511 (23%), Positives = 246/511 (48%), Gaps = 13/511 (2%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           S  ++ +S C++   +T+G Q+H  ++ +G    ++IGS L+ LY R      +  +F  
Sbjct: 14  SILAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRCSQLESSYLVFQT 73

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P +N  +W  M+  F   +R +  L ++  M     +PN ++F  +   C+   LL  G
Sbjct: 74  MPTKNTVSWTAMISGFALHNRVEPCLHLFASMMLSSCKPNDITFATLFSVCTKHALLALG 133

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           + +H+  +++G+    + V+NAL+  Y+ CG + EA+  F  I   D++SWN+I+   + 
Sbjct: 134 RSVHALQMRMGFHSY-VHVSNALLSMYAKCGCIEEAQFIFGCIACKDLVSWNAIIFGCSQ 192

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
           Y L    L+L   M+     P   SF+  L+       V  G+     + + G   G  H
Sbjct: 193 YVLAKHCLDLLKEMERQHIVPDALSFLGVLSSCRHARLVEEGRHCFKTMIEHGIKPGLDH 252

Query: 351 VQSALTDMYGKCNVIESSVAVFE--SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
             S + D+ G+  ++E +  + +  S P  ++    SL+ S    GNI   ++     + 
Sbjct: 253 Y-SCMVDLLGRAGLLEEAWDLIQTMSIPPNAV-IWGSLLGSCRVHGNISIGIQAAEHRLK 310

Query: 409 EGIGLDEVTLSTTLKALSVSASAN---LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
              G  E +   ++ A ++S+ A+         LH   +K G +S + +  SL+  YSRC
Sbjct: 311 LEPGKGETSTDQSILAAAMSSCADRQMFTQGTQLHGLLVKVGCDSTVFIGSSLITLYSRC 370

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
             +E S+ VF+ +P+ N V +T++++G++ +      L +   M      P+ +TF  + 
Sbjct: 371 SQLESSYLVFQTMPTKNTVSWTAMISGFALHNRVEPCLHLFASMRLSSCKPNDITFATLF 430

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           + C +  ++  G+ V ++++   G  +     + ++ M  + G +D+A+ +        D
Sbjct: 431 SVCTNHALLALGKSV-HALQMRMGFHSYVHVSNALLSMYAKCGCIDEAQSIFGFI-ACKD 488

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
            + W++++  C  +G   + +   ++L E+E
Sbjct: 489 LVSWNAMIFGCSQYG---LAKHCLDLLKEME 516


>gi|115474659|ref|NP_001060926.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|42408463|dbj|BAD09644.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|50725835|dbj|BAD33365.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
 gi|113622895|dbj|BAF22840.1| Os08g0131000 [Oryza sativa Japonica Group]
 gi|215704880|dbj|BAG94908.1| unnamed protein product [Oryza sativa Japonica Group]
 gi|215712334|dbj|BAG94461.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 674

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 173/630 (27%), Positives = 313/630 (49%), Gaps = 68/630 (10%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N  S N  +  ++++    +A  LF +MPA++ V+Y  +ISG  K     +A  +Y+
Sbjct: 96  PRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYE 155

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG---------SP 150
           EM           +     V SNA      +  + RV  L   L ++ G         S 
Sbjct: 156 EM----------PWQWRDPVGSNAL-----MAGYLRVGELAMALRVFEGMTVRDVISWSA 200

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           +VD   + G    A  +FD +PERN+ +W  M+R + +     + L ++  M+ EGV+ N
Sbjct: 201 MVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVN 260

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +    +  C+   L  EG Q+H+ +I +G+ +++IF+ ++++  YS  G +++AK++F
Sbjct: 261 TTTLSVALDACAAASLAREGIQIHNLIISMGF-ELDIFLGDSIIIMYSRFGWMVDAKRAF 319

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +   D++SWNS+++ Y  +D++ +A  LF   +L  ++ ++      + FA+R     
Sbjct: 320 DCMQQKDIVSWNSLITGYVQHDMVEEAHVLF---KLMHQKDAVSWTSMVVGFANR----- 371

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
                 G+                          +  SV +FE  P +      ++++S 
Sbjct: 372 ------GW--------------------------MRESVELFEQMPVKDEVAWTAIISSF 399

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           + +G+   AV  F  M  EG   + +  S  L AL+  A  N G  R  H  +I  G+  
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQG--RQAHAYSINMGWVF 457

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           + AV  SL+  Y++CG +  ++ VF  I +P+++   S++  + ++G   +AL +   M 
Sbjct: 458 DSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQ 517

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  P+ VTFL +L GC  +G V++G   F SM+ VYG++ + +HY+CM+D+LGRAG+L
Sbjct: 518 NAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +A E++   P       W++LL +  +H N    +  A  L+E +P D   Y+ +S  +
Sbjct: 578 AEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSRMF 637

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           S  G  +  M ++   L+   ++  G+SLI
Sbjct: 638 SSAGMEDEEM-LKVVQLSNLASKRPGYSLI 666



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 146/350 (41%), Gaps = 64/350 (18%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+  Y   G L +A+  FD +P  DVISW ++++ YAD   +  A  +F  M   R  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPR-RNA 100

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS--ALTDMYGKCNVIESS 368
           PS  + +          +VY           L +   + +  S  A+     K  ++  +
Sbjct: 101 PSWNALL----------SVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEA 150

Query: 369 VAVFESAP--GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
             V+E  P   R     N+LM   L  G +  A+ +F     EG+ + +V          
Sbjct: 151 ELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVF-----EGMTVRDV---------- 195

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           +S SA                          ++D   + G +  + +VF+ +P  NVV +
Sbjct: 196 ISWSA--------------------------MVDGLCKHGSVSEARRVFDAMPERNVVSW 229

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           TS++ GY + GM R+ L +   M + G+  +  T    L  C  + + +EG  + N + S
Sbjct: 230 TSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIIS 289

Query: 547 VYGIDADRQHYSCMIDMLGRAGIL---DKAEELLQQTPGGGDCMMWSSLL 593
           + G + D      +I M  R G +    +A + +QQ     D + W+SL+
Sbjct: 290 M-GFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQK----DIVSWNSLI 334


>gi|218186285|gb|EEC68712.1| hypothetical protein OsI_37194 [Oryza sativa Indica Group]
          Length = 787

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 157/612 (25%), Positives = 300/612 (49%), Gaps = 6/612 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G + +A++ F  +  +D+  +N ++ G         A+     M   G+     T+
Sbjct: 179 YAKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDRYTY 238

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            S +  CS +  +  G Q+HC V+      N  + + LVD+Y R      A  +F ++ +
Sbjct: 239 ISAVKACSISAQWDLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQ 298

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++  +WN M   F        V      M   G +PN ++F  ++R          G Q+
Sbjct: 299 KDTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLGLQI 358

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
            +   + G+ D N+ VANA+++    CG L  A   F  +   ++++WN I++ Y  +  
Sbjct: 359 FALAYRHGYTD-NVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLFSR 417

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             DA+ LF  +    +RP   ++   L+           +QIH  + K GF        S
Sbjct: 418 SEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQFVSTS 477

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG-FMVDEGIG 412
            +         ++SS+ + E +    L    +++++ L  G   + + +F  F  D    
Sbjct: 478 LIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRGDSTNK 537

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            DE  L+T L A   + +A +  CR +H   +K+G  ++  V+ +++DAY++CG I  + 
Sbjct: 538 PDEFILATVLNA--CANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGEITSAE 595

Query: 473 QVFEKIPSP--NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
             F  + S   + + + +++  Y+ +G+  EAL++ E M +  L P   TF+ +L+ C+H
Sbjct: 596 SAFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAILSACSH 655

Query: 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
            G+V++G+L F++M S YG+  +R +Y+C++D+L R G+LD+A+ ++   P      +W 
Sbjct: 656 LGLVEQGKLAFSTMLSAYGMHPERANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWR 715

Query: 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
           SL+  CR+HGN+ +G   A  ++ + P     Y  +SN Y++ GE++ + + R   +  K
Sbjct: 716 SLVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLSNVYADDGEWQSAEETRRRMVQNK 775

Query: 651 LTRDIGHSLIEV 662
           L +  G+S +E+
Sbjct: 776 LQKVHGYSRVEM 787



 Score =  149 bits (377), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 133/574 (23%), Positives = 252/574 (43%), Gaps = 29/574 (5%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + ++ N  +  + + G L+SA K+FDEMP R++V++  ++S   +   P      +  M+
Sbjct: 62  HTFNMNYLLIYYARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMI 121

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTE-----GIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
             G   +    +++L+ C +   ++       + +H   +  G   N ++GS L+ +Y +
Sbjct: 122 RSGFCPNEFALATMLTACHSMLAHSSNKLPIALSLHGVAVRAGLDSNPFVGSSLLLMYAK 181

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    A   F  +  ++L  WN ML  +         +     M   G+ P+  ++   
Sbjct: 182 HGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDRYTYISA 241

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           V+ CSI    D G+QLH  VI    ++ N  V N+LVD Y        A   F  I   D
Sbjct: 242 VKACSISAQWDLGRQLHCLVIH-SMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQKD 300

Query: 278 VISWNSIVSIYA-DYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQ 334
            +SWN++ S +A D D   D     + + + R   +P+  +F   L  +    N   G Q
Sbjct: 301 TVSWNTMFSGFAHDED---DKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLGLQ 357

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           I     + G+   +V V +A+ +M  +C +++ +   F S   R++   N ++       
Sbjct: 358 IFALAYRHGYT-DNVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLFS 416

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             +DA+ +F  +V  G   DE T S  L A   +  A       +H   +K GF S   V
Sbjct: 417 RSEDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGAR--DHEQIHAIILKQGFASCQFV 474

Query: 455 SCSLMDAYSRC-GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           S SL+ A +   G ++ S ++ E      +V + +I++ + ++G+  E + +  +   RG
Sbjct: 475 STSLIKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLF--RG 532

Query: 514 ---LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY---SCMIDMLGRA 567
                PD+     VL  C ++ +++  + +     S+        H+   S ++D   + 
Sbjct: 533 DSTNKPDEFILATVLNACANAALIRHCRCI----HSLVLKTGHSNHFCVASAVVDAYAKC 588

Query: 568 GILDKAEELLQQ-TPGGGDCMMWSSLLRSCRVHG 600
           G +  AE      +    D +M++++L +   HG
Sbjct: 589 GEITSAESAFTAVSSATNDAIMYNTMLTAYANHG 622



 Score = 45.4 bits (106), Expect = 0.11,   Method: Compositional matrix adjust.
 Identities = 43/211 (20%), Positives = 91/211 (43%), Gaps = 13/211 (6%)

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+  Y+R G ++ + +VF+++P  N+V +T++++  +RNG           MI+ G  P+
Sbjct: 69  LLIYYARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMIRSGFCPN 128

Query: 518 KVTFLCVLAGCN----HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           +     +L  C+    HS       L  + +    G+D++    S ++ M  + G +  A
Sbjct: 129 EFALATMLTACHSMLAHSSNKLPIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAA 188

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
           +          D   W+++L     +G    G    + ++ +     A      + Y+ I
Sbjct: 189 QRAFAHIR-NKDLTCWNAMLEGYVSNG---FGHHAISTVLVMHHSGLA-----PDRYTYI 239

Query: 634 GEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
              +      +  L R+L   + HS++E N+
Sbjct: 240 SAVKACSISAQWDLGRQLHCLVIHSMLESNT 270


>gi|18481717|gb|AAL73539.1|AF466200_18 hypothetical protein S250_18C08.29 [Sorghum bicolor]
          Length = 679

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 182/650 (28%), Positives = 317/650 (48%), Gaps = 76/650 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++ S    +  +   G+L SA+ +FD+MP R+  ++N L+S   +   P  A  L+ 
Sbjct: 68  PHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAASWNALVSLYLRAGRPAAAHALF- 126

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHC--------------------RVLSL 139
                   ++A ++ ++++  + AG   E   ++                     R   L
Sbjct: 127 ---CKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRWRDPVGSNAMIWGYLRGGEL 183

Query: 140 GFGLNLYIG---------SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           G  L ++ G         S +VD   + G    A  LF+ +PERN+ +W  M+R + +  
Sbjct: 184 GMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHG 243

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + L ++  M+ EGV+ N ++   ++ GC+   L+DEG Q+H  +I++G+ + +IF+ 
Sbjct: 244 MYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAE-DIFLG 302

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           ++L+  YS  GS+ +A+  F F+   D++SWNS+++ Y   D+I DA  LF   +L  ++
Sbjct: 303 DSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQNDMIEDAHVLF---KLMPEK 359

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
            +I      + FA+R           G+                          +  SV 
Sbjct: 360 DAISWTSMVVGFANR-----------GW--------------------------MRESVE 382

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +FE  P +      ++M+SL+ +GN   AV  F  M  EG   + V  S  L AL+  A 
Sbjct: 383 LFEQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAM 442

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
            N G     H  A+  G+  + AV  SL+  Y++CG +  +H+VF  I  P+++   S++
Sbjct: 443 LNQG--LQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMI 500

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
             ++++G+  +A  +   M   G  P+ VTFL +L  C  +G+V+ G   F SM+SVYGI
Sbjct: 501 TAFAQHGLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGI 560

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
             +  HY+CM+D+LGRAG L++A E+    P       W +LL S  +H N  + +  A 
Sbjct: 561 QPNPDHYTCMVDLLGRAGFLNEALEMTNSMPQKDYPDAWKALLSSSSLHSNLDLAKLAAQ 620

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
            L+E++P D   Y+ +SN +S  G  E    ++   L+   ++  G+SLI
Sbjct: 621 RLLEIDPYDATAYTVLSNMFSSAGMKEDEEMVKVAQLSNMASKSPGYSLI 670



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 156/349 (44%), Gaps = 61/349 (17%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD------LIFDALEL---- 300
           NAL+  Y   G + +A++ FD +P  DVISW ++++ YAD         +FD + L    
Sbjct: 45  NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104

Query: 301 ----FFRMQLCRKRPSIR-------------SFVEFLNFASRTG------NVYF------ 331
                  + L   RP+               S+   +   +R G       VY+      
Sbjct: 105 SWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRW 164

Query: 332 ------GKQIHGYVT--KLG-----FDHGS---VHVQSALTDMYGKCNVIESSVAVFESA 375
                    I GY+   +LG     FD  +   V   SA+ D   K   +  +  +FE+ 
Sbjct: 165 RDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAM 224

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           P R++    S++   +  G  +D + +F  M  EG+ ++ +TLS  L   + ++  + GS
Sbjct: 225 PERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGS 284

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
              +HC  I+ GF  +I +  SL+  YSR G +  +  +F  +   ++V + S++ GY +
Sbjct: 285 --QVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQ 342

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           N M  +A  + ++M ++    D +++  ++ G  + G ++E   +F  M
Sbjct: 343 NDMIEDAHVLFKLMPEK----DAISWTSMVVGFANRGWMRESVELFEQM 387


>gi|242082744|ref|XP_002441797.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
 gi|241942490|gb|EES15635.1| hypothetical protein SORBIDRAFT_08g002505 [Sorghum bicolor]
          Length = 839

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 174/667 (26%), Positives = 322/667 (48%), Gaps = 9/667 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           M    + P   T+  L   C  +  L+  + + +   +   ++++ + +  +D + K   
Sbjct: 127 MARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCRS 186

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  A + F  M  R+ V++   I+GC +     + L L+ +M   G+  S   ++SV   
Sbjct: 187 LEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFRS 246

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+     +   Q+H   +   F  +  +G+ +VD+Y +    V A   F  LP   +   
Sbjct: 247 CAAITCLSTARQLHAHAIKNKFSADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQAC 306

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N M+          E L+++  M   G+  + +S   +   C+      +G Q+H   IK
Sbjct: 307 NAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLAIK 366

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G+ DV++ V NA++D Y  C +L+EA   F  +   D +SWN+I++     +   D + 
Sbjct: 367 SGF-DVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIA 425

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTD 357
               M      P   ++   L   +   ++ +G  +HG   K  LG D     V S + D
Sbjct: 426 YLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLD---AFVSSTVVD 482

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC +I  +  + +   G+ L   NS+++    +   ++A + F  M+D G+  D  T
Sbjct: 483 MYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHFT 542

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
            +T L   +  A+  LG  + +H   IK     +  +S +L+D Y++CG++  S  +FEK
Sbjct: 543 YATVLDTCANLATIELG--KQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEK 600

Query: 478 IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
               + V + +++ GY+ +G G EAL+M E M Q  ++P+  TF+ VL  C+H G++ +G
Sbjct: 601 AQKLDFVSWNAMICGYALHGQGFEALEMFERMQQANVVPNHATFVAVLRACSHVGLLDDG 660

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
              F  M S Y ++   +H++CM+D+LGR+    +A + ++  P   D ++W +LL  C+
Sbjct: 661 CRYFYLMTSRYKLEPQLEHFACMVDILGRSKGPQEALKFIRSMPLEADAVIWKTLLSICK 720

Query: 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGH 657
           +  +  +    A+ ++ L+P D +VY  +SN Y+E G++    + R      +L ++ G 
Sbjct: 721 IRQDVEVAETAASNVLRLDPDDSSVYILLSNVYAESGKWVDVSRTRRLMRQGRLKKEPGC 780

Query: 658 SLIEVNS 664
           S IEV S
Sbjct: 781 SWIEVQS 787



 Score =  196 bits (499), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 146/571 (25%), Positives = 267/571 (46%), Gaps = 24/571 (4%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +  S N  +  +  +G   +A  LF  MP  D+V++N L+SG  +    + ++ L  
Sbjct: 66  PHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDSVGLSV 125

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G+    +T + +L  C        G+QIH   +  G  +++  GS LVD+Y +  
Sbjct: 126 EMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTGLEMDVRAGSALVDMYGKCR 185

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               AL  F  + ERN  +W   +    +  +    L ++ +M+  G+  +  ++  + R
Sbjct: 186 SLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPAYASVFR 245

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L   +QLH+H IK  +   +  V  A+VD Y+   SL++A+++F  +P   V 
Sbjct: 246 SCAAITCLSTARQLHAHAIKNKF-SADRVVGTAIVDVYAKADSLVDARRAFFSLPNHTVQ 304

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           + N+++       L  +AL+LF  M        + S     +  +       G Q+H   
Sbjct: 305 ACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQGLQVHCLA 364

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GFD   V V++A+ D+YGKC  +  +  VF+    R     N+++ +L  +   +D 
Sbjct: 365 IKSGFDV-DVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDT 423

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +     M+  G+  D+ T  + LKA +   S   GS  ++H  AIKSG   +  VS +++
Sbjct: 424 IAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGS--VVHGKAIKSGLGLDAFVSSTVV 481

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +CG I  + ++ ++I    +V + SI++G+S N    EA      M+  G+ PD  
Sbjct: 482 DMYCKCGMITEAQKLHDRIGGQELVSWNSIISGFSLNKQSEEAQKFFSEMLDIGVKPDHF 541

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSM--KSVYGIDADRQHYSCMIDMLGRAG-------IL 570
           T+  VL  C +   ++ G+ +   +  + + G   D    S ++DM  + G       + 
Sbjct: 542 TYATVLDTCANLATIELGKQIHGQIIKQEMLG---DEYISSTLVDMYAKCGNMPDSLLMF 598

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +KA++L        D + W++++    +HG 
Sbjct: 599 EKAQKL--------DFVSWNAMICGYALHGQ 621



 Score =  188 bits (477), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 141/582 (24%), Positives = 276/582 (47%), Gaps = 44/582 (7%)

Query: 109 SASTFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + +TFS +  +C+ AG      G   H R+L  GF    ++ + L+ +Y R G +  A  
Sbjct: 1   ATATFSHLYQLCAGAGRSALATGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGAAHARG 60

Query: 167 LFDELPERNLATWNLMLRAFCEL-----------SRPDEVLRMYN--------------- 200
           +FD +P R+  +WN ML A+              + PD  +  +N               
Sbjct: 61  VFDVMPHRDTVSWNTMLTAYAHAGDTGAAASLFGAMPDPDVVSWNALLSGYCQRGMFRDS 120

Query: 201 -----KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVD 255
                +M   GV P+  +   +++ C     L  G Q+H+  +K G +++++   +ALVD
Sbjct: 121 VGLSVEMARRGVAPDRTTLAVLLKACGGLEDLALGVQIHAVAVKTG-LEMDVRAGSALVD 179

Query: 256 FYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS 315
            Y  C SL +A + F  +   + +SW + ++     +     LELF +MQ      S  +
Sbjct: 180 MYGKCRSLEDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGLELFVQMQRLGLGVSQPA 239

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
           +       +    +   +Q+H +  K  F    V V +A+ D+Y K + +  +   F S 
Sbjct: 240 YASVFRSCAAITCLSTARQLHAHAIKNKFSADRV-VGTAIVDVYAKADSLVDARRAFFSL 298

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           P  +++ CN++M  L+ +G   +A+++F FM   GIG D V+LS    A +       G 
Sbjct: 299 PNHTVQACNAMMVGLVRTGLGAEALQLFQFMTRSGIGFDVVSLSGVFSACAEVKGYLQG- 357

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
              +HC AIKSGF+ ++ V  +++D Y +C  +  ++ VF+++   + V + +I+    +
Sbjct: 358 -LQVHCLAIKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQ 416

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGIDADR 554
           N    + +  L  M++ G+ PD  T+  VL  C     ++ G +V   ++KS  G+DA  
Sbjct: 417 NECYEDTIAYLNEMLRYGMEPDDFTYGSVLKACAGLQSLEYGSVVHGKAIKSGLGLDAFV 476

Query: 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
              S ++DM  + G++ +A++L  +  GG + + W+S++    ++      ++  + +++
Sbjct: 477 S--STVVDMYCKCGMITEAQKLHDRI-GGQELVSWNSIISGFSLNKQSEEAQKFFSEMLD 533

Query: 615 L--EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +  +P D   Y+ V +  + +   E+  QI    + +++  D
Sbjct: 534 IGVKP-DHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGD 574


>gi|110736949|dbj|BAF00431.1| hypothetical protein [Arabidopsis thaliana]
          Length = 659

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 163/509 (32%), Positives = 269/509 (52%), Gaps = 18/509 (3%)

Query: 167 LFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           LF+   ++ ++ +WN ++          E L  ++ M+   + P   SF   ++ CS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  GKQ H      G+   +IFV++AL+  YS CG L +A+K FD IP  D++SW S++
Sbjct: 91  DIFSGKQTHQQAFVFGY-QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMI 149

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSF------VEFLNFASRTGNVYFGKQIHGYV 339
             Y       DA+ LF  + +         F      V  ++  SR       + IH +V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAV----FESAPGRSLECCNSLMTSLLHSGN 395
            K GFD G V V + L D Y K    E  VAV    F+    +     NS+M+    SG 
Sbjct: 210 IKRGFDRG-VSVGNTLLDAYAKGG--EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGM 266

Query: 396 IKDAVEMFGFMV-DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             +A E+F  +V ++ +  + +TLST L A+S S +  +G C  +H   I+ G E ++ V
Sbjct: 267 SNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC--IHDQVIRMGLEDDVIV 324

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             S++D Y +CG +E + + F+++ + NV  +T+++ GY  +G   +AL++   MI  G+
Sbjct: 325 GTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV 384

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ +TF+ VLA C+H+G+  EG   FN+MK  +G++   +HY CM+D+LGRAG L KA 
Sbjct: 385 RPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           +L+Q+     D ++WSSLL +CR+H N  +       L EL+  +   Y  +S+ Y++ G
Sbjct: 445 DLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAG 504

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            ++   ++R     R L +  G SL+E+N
Sbjct: 505 RWKDVERVRMIMKNRGLVKPPGFSLLELN 533



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 99/428 (23%), Positives = 204/428 (47%), Gaps = 15/428 (3%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           D+ ++N +I+   +     +AL  +  M    +  + S+F   +  CS+      G Q H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            +    G+  ++++ S L+ +Y   G    A  +FDE+P+R++ +W  M+R +       
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNAL 159

Query: 194 EVLRMYNKMKAEGVEPNGLSF------CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           + + ++  +  +  + +   F        ++  CS        + +HS VIK G+ D  +
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGF-DRGV 218

Query: 248 FVANALVDFYSACGS--LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
            V N L+D Y+  G   +  A+K FD I   D +S+NSI+S+YA   +  +A E+F R+ 
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL- 277

Query: 306 LCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +  K  +  +      L   S +G +  GK IH  V ++G +   V V +++ DMY KC 
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE-DDVIVGTSIIDMYCKCG 336

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +E++   F+    +++    +++      G+   A+E+F  M+D G+  + +T  + L 
Sbjct: 337 RVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLA 396

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
           A S  A  ++   R  +    + G E  +     ++D   R G ++ ++ + +++   P+
Sbjct: 397 ACS-HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPD 455

Query: 483 VVCFTSIM 490
            + ++S++
Sbjct: 456 SIIWSSLL 463



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 90/372 (24%), Positives = 178/372 (47%), Gaps = 15/372 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +I+ S+  I  +   G L  A+K+FDE+P RD+V++  +I G     +   A+ L+ +
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRDIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 101 MVSHGIKESASTF------SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
           ++     +  + F       SV+S CS          IH  V+  GF   + +G+ L+D 
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDA 227

Query: 155 YMRMGPS--VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNG 211
           Y + G      A  +FD++ +++  ++N ++  + +    +E   ++ ++ K + V  N 
Sbjct: 228 YAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNA 287

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   ++   S    L  GK +H  VI++G  D ++ V  +++D Y  CG +  A+K+FD
Sbjct: 288 ITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED-DVIVGTSIIDMYCKCGRVETARKAFD 346

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG-NVY 330
            +   +V SW ++++ Y  +     ALELF  M     RP+  +FV  L   S  G +V 
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVE 406

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
             +  +    + G + G  H    + D+ G+   ++ +  + +      ++  + + +SL
Sbjct: 407 GWRWFNAMKGRFGVEPGLEHY-GCMVDLLGRAGFLQKAYDLIQRMK---MKPDSIIWSSL 462

Query: 391 LHSGNIKDAVEM 402
           L +  I   VE+
Sbjct: 463 LAACRIHKNVEL 474


>gi|356503769|ref|XP_003520676.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g03800-like [Glycine max]
          Length = 874

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 176/657 (26%), Positives = 332/657 (50%), Gaps = 47/657 (7%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + + SN  I  ++K      A +LF  +P+ ++V+Y  LIS   K R    AL+L+  M 
Sbjct: 97  DTHLSNALISTYLKLNLFPHALRLFLSLPSPNVVSYTTLISFLSKHRQ-HHALHLFLRMT 155

Query: 103 SHG-IKESASTFSSVLSVCSNA-GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +   +  +  T+ +VL+ CS+    +  G+Q+H   L      + ++ + LV LY +   
Sbjct: 156 TRSHLPPNEYTYVAVLTACSSLLHHFHFGLQLHAAALKTAHFDSPFVANALVSLYAKHAS 215

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVR 219
              AL LF+++P R++A+WN ++ A  + S  D   R++  M+A +    +  +   ++ 
Sbjct: 216 FHAALKLFNQIPRRDIASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLT 275

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +  M   EG+Q+H+H +KLG ++ ++ V N L+ FYS  G++ + +  F+ + V DVI
Sbjct: 276 ASASLM---EGQQVHAHAVKLG-LETDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVI 331

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQ-------------LCRKR---PSIRSFV------ 317
           +W  +V+ Y ++ L+  AL++F  M               CR      ++R FV      
Sbjct: 332 TWTEMVTAYMEFGLVNLALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEG 391

Query: 318 -EFLNFASRT--------GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            E  +F+  +        G+    KQ+HG+  K GF     +V++AL DMY +C  +  +
Sbjct: 392 LELTDFSLTSVVDACGLLGDYKVSKQVHGFAVKFGFGSNG-YVEAALLDMYTRCGRMVDA 450

Query: 369 VAVFESAPGRSLE--CCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKAL 425
             +F              +++     +G  ++A+ +F     +G + +DEV  ++ L   
Sbjct: 451 GKMFLRWELEEFSSVVWTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLC 510

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
                 ++G  + +HC  IK G   N+ V  +++  Y +CG ++ + +VF  +P  ++V 
Sbjct: 511 GTIGHLDMG--KQIHCHVIKCGLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMPCTDIVT 568

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM--VKEGQLVFNS 543
           + ++++G   +  G  AL++   M+  G+ P++VTF+ +++    + +  V + + +FNS
Sbjct: 569 WNTLISGNLMHRQGDRALEIWVEMLGEGIKPNQVTFVLIISAYRQTNLNLVDDCRNLFNS 628

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M++VY I+   +HY+  I +LG  G+L +A E +   P     ++W  LL  CR+H NE+
Sbjct: 629 MRTVYQIEPTSRHYASFISVLGHWGLLQEALETINNMPFQPSALVWRVLLDGCRLHKNEL 688

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           IG+  A  ++ LEP D + +  VSN YS  G ++ S  +RE    +   +    S I
Sbjct: 689 IGKWAAQNILALEPKDPSTFILVSNLYSASGRWDRSEMVREDMREKGFRKHPAQSWI 745



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 134/551 (24%), Positives = 246/551 (44%), Gaps = 53/551 (9%)

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +H +   + +    L V S +G       +H  +L      + ++ + L+  Y+++    
Sbjct: 57  THYLPPESHSLLHALHVSSRSGDTHLAKTVHATLLKRD-EEDTHLSNALISTYLKLNLFP 115

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGC 221
            AL LF  LP  N+ ++  ++ +F    R    L ++ +M     + PN  ++  ++  C
Sbjct: 116 HALRLFLSLPSPNVVSYTTLI-SFLSKHRQHHALHLFLRMTTRSHLPPNEYTYVAVLTAC 174

Query: 222 SIGMLLDE---GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           S   LL     G QLH+  +K    D + FVANALV  Y+   S   A K F+ IP  D+
Sbjct: 175 S--SLLHHFHFGLQLHAAALKTAHFD-SPFVANALVSLYAKHASFHAALKLFNQIPRRDI 231

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
            SWN+I+S      L   A  LF  MQ           +  L  AS   ++  G+Q+H +
Sbjct: 232 ASWNTIISAALQDSLYDTAFRLFRNMQATDAFRVDDFTLSILLTAS--ASLMEGQQVHAH 289

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             KLG +   ++V + L   Y K   ++    +FE    R +     ++T+ +  G +  
Sbjct: 290 AVKLGLE-TDLNVGNGLIGFYSKFGNVDDVEWLFEGMRVRDVITWTEMVTAYMEFGLVNL 348

Query: 399 AVEMF----------------GF---------------MVDEGIGLDEVTLSTTLKALSV 427
           A+++F                GF               MV+EG+ L + +L++ + A  +
Sbjct: 349 ALKVFDEMPEKNSVSYNTVLAGFCRNEQGFEAMRLFVRMVEEGLELTDFSLTSVVDACGL 408

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK--IPSPNVVC 485
                +   + +H  A+K GF SN  V  +L+D Y+RCG +  + ++F +  +   + V 
Sbjct: 409 LGDYKVS--KQVHGFAVKFGFGSNGYVEAALLDMYTRCGRMVDAGKMFLRWELEEFSSVV 466

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRG-LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           +T+++ GY+RNG   EA+ +  V    G +I D+V    +L  C   G +  G+ +   +
Sbjct: 467 WTAMICGYARNGQPEEAIYLFHVGRSDGKVIMDEVAAASMLGLCGTIGHLDMGKQIHCHV 526

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
               G+  + +  + ++ M  + G +D A ++    P   D + W++L+    +H     
Sbjct: 527 IKC-GLGFNLEVGNAVVSMYFKCGSVDDAMKVFGDMP-CTDIVTWNTLISGNLMHRQ--- 581

Query: 605 GRRVANILMEL 615
           G R   I +E+
Sbjct: 582 GDRALEIWVEM 592


>gi|14165320|gb|AAK55452.1|AC069300_7 putative PPR repeat protein [Oryza sativa Japonica Group]
 gi|31433484|gb|AAP54989.1| pentatricopeptide, putative, expressed [Oryza sativa Japonica
           Group]
          Length = 905

 Score =  264 bits (674), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 172/658 (26%), Positives = 322/658 (48%), Gaps = 5/658 (0%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T   L  +C+++  LS  + + +   +   ++++ + +  +D + K   L+ A   
Sbjct: 189 PDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCRSLDDALCF 248

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  MP R+ V++   I+GC +     + L L+ EM   G+  S  +++S    C+     
Sbjct: 249 FYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFRSCAAMSCL 308

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G Q+H   +   F  +  +G+ +VD+Y +      A   F  LP   + T N M+   
Sbjct: 309 NTGRQLHAHAIKNKFSSDRVVGTAIVDVYAKANSLTDARRAFFGLPNHTVETSNAMMVGL 368

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                  E + ++  M    +  + +S   +   C+      +G+Q+H   IK G+ DV+
Sbjct: 369 VRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLAIKSGF-DVD 427

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           I V NA++D Y  C +L+EA   F  +   D +SWN+I++         D +  F  M  
Sbjct: 428 ICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDTILHFNEMLR 487

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +P   ++   L   +   ++ +G  +H  V K G    +  V S + DMY KC +I+
Sbjct: 488 FGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKSGLGSDAF-VASTVVDMYCKCGIID 546

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  + +   G+ +   N++++    +   ++A + F  M+D G+  D  T +T L   +
Sbjct: 547 EAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHFTFATVLDTCA 606

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
             A+  LG  + +H   IK     +  +S +L+D Y++CG +  S  VFEK+   + V +
Sbjct: 607 NLATIELG--KQIHGQIIKQEMLDDEYISSTLVDMYAKCGDMPDSLLVFEKVEKRDFVSW 664

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++ GY+ +G+G EAL M E M +  ++P+  TF+ VL  C+H G+  +G   F+ M +
Sbjct: 665 NAMICGYALHGLGVEALRMFERMQKENVVPNHATFVAVLRACSHVGLFDDGCRYFHLMTT 724

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            Y ++   +H++CM+D+LGR+    +A + +   P   D ++W +LL  C++  +  I  
Sbjct: 725 HYKLEPQLEHFACMVDILGRSKGPQEAVKFINSMPFQADAVIWKTLLSICKIRQDVEIAE 784

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             A+ ++ L+P D +VY  +SN Y+E G++    + R      +L ++ G S IEV S
Sbjct: 785 LAASNVLLLDPDDSSVYILLSNVYAESGKWADVSRTRRLLKQGRLKKEPGCSWIEVQS 842



 Score =  218 bits (556), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 148/561 (26%), Positives = 278/561 (49%), Gaps = 6/561 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ +  S N  +  +  +G +++A  LFD MP  D+V++N L+SG  +    ++++ L+ 
Sbjct: 121 PRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDLFV 180

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G+    +TF+ +L  CS     + G+Q+H   +  G  +++  GS LVD+Y +  
Sbjct: 181 EMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTGLEIDVRTGSALVDMYGKCR 240

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               AL  F  +PERN  +W   +    +  +    L ++ +M+  G+  +  S+    R
Sbjct: 241 SLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYASAFR 300

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+    L+ G+QLH+H IK  +    + V  A+VD Y+   SL +A+++F  +P   V 
Sbjct: 301 SCAAMSCLNTGRQLHAHAIKNKFSSDRV-VGTAIVDVYAKANSLTDARRAFFGLPNHTVE 359

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           + N+++       L  +A+ LF  M     R  + S     +  + T   + G+Q+H   
Sbjct: 360 TSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQGQQVHCLA 419

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K GFD   + V +A+ D+YGKC  +  +  +F+    +     N+++ +L  +G+  D 
Sbjct: 420 IKSGFDV-DICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGHYDDT 478

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           +  F  M+  G+  D+ T  + LKA +   S   G   ++H   IKSG  S+  V+ +++
Sbjct: 479 ILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYG--LMVHDKVIKSGLGSDAFVASTVV 536

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
           D Y +CG I+ + ++ ++I    VV + +I++G+S N    EA      M+  GL PD  
Sbjct: 537 DMYCKCGIIDEAQKLHDRIGGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGLKPDHF 596

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF  VL  C +   ++ G+ +   +     +D D    S ++DM  + G +  +  + ++
Sbjct: 597 TFATVLDTCANLATIELGKQIHGQIIKQEMLD-DEYISSTLVDMYAKCGDMPDSLLVFEK 655

Query: 580 TPGGGDCMMWSSLLRSCRVHG 600
                D + W++++    +HG
Sbjct: 656 VE-KRDFVSWNAMICGYALHG 675



 Score =  181 bits (458), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 145/589 (24%), Positives = 278/589 (47%), Gaps = 46/589 (7%)

Query: 112 TFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           TFS V   C+ AG      G   H R++  GF    ++ + L+ +Y R   +  A  +FD
Sbjct: 59  TFSRVFQSCAQAGREALAAGRAAHARMVVSGFVPTAFVSNCLLQMYARCAGAACARRVFD 118

Query: 170 ELPERNLATWNLMLRA-------------------------------FCELSRPDEVLRM 198
            +P R+  +WN ML A                               +C+     E + +
Sbjct: 119 AMPRRDTVSWNTMLTAYSHAGDISTAVALFDGMPDPDVVSWNALVSGYCQRGMFQESVDL 178

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           + +M   GV P+  +F  +++ CS    L  G Q+H+  +K G +++++   +ALVD Y 
Sbjct: 179 FVEMARRGVSPDRTTFAVLLKSCSALEELSLGVQVHALAVKTG-LEIDVRTGSALVDMYG 237

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            C SL +A   F  +P  + +SW + ++     +     LELF  MQ      S  S+  
Sbjct: 238 KCRSLDDALCFFYGMPERNWVSWGAAIAGCVQNEQYVRGLELFIEMQRLGLGVSQPSYAS 297

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
                +    +  G+Q+H +  K  F    V V +A+ D+Y K N +  +   F   P  
Sbjct: 298 AFRSCAAMSCLNTGRQLHAHAIKNKFSSDRV-VGTAIVDVYAKANSLTDARRAFFGLPNH 356

Query: 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           ++E  N++M  L+ +G   +A+ +F FM+   I  D V+LS    A + +     G  + 
Sbjct: 357 TVETSNAMMVGLVRAGLGIEAMGLFQFMIRSSIRFDVVSLSGVFSACAETKGYFQG--QQ 414

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +HC AIKSGF+ +I V+ +++D Y +C  +  ++ +F+ +   + V + +I+    +NG 
Sbjct: 415 VHCLAIKSGFDVDICVNNAVLDLYGKCKALMEAYLIFQGMKQKDSVSWNAIIAALEQNGH 474

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHY 557
             + +     M++ G+ PD  T+  VL  C     ++ G +V +  +KS  G+ +D    
Sbjct: 475 YDDTILHFNEMLRFGMKPDDFTYGSVLKACAALRSLEYGLMVHDKVIKS--GLGSDAFVA 532

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME--L 615
           S ++DM  + GI+D+A++L  +  GG   + W+++L    ++      ++  + +++  L
Sbjct: 533 STVVDMYCKCGIIDEAQKLHDRI-GGQQVVSWNAILSGFSLNKESEEAQKFFSEMLDMGL 591

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD--IGHSLIEV 662
           +P D   ++ V +  + +   E+  QI    + +++  D  I  +L+++
Sbjct: 592 KP-DHFTFATVLDTCANLATIELGKQIHGQIIKQEMLDDEYISSTLVDM 639


>gi|449447749|ref|XP_004141630.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g13880-like [Cucumis sativus]
          Length = 746

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 173/617 (28%), Positives = 314/617 (50%), Gaps = 17/617 (2%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K G   SA KLFD+M   ++VTYN LISG  +  +  + + L+D+    G+K      + 
Sbjct: 13  KCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKLDKYNCAG 72

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
            L+ CS +G  + G  IH  +L  G G  + + + L+D+Y + G    A  LFD   + +
Sbjct: 73  ALTACSQSGNLSAGKMIHGLILVYGLGSQVVLTNSLIDMYSKCGQVDYARILFDHSDKLD 132

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQL 233
             +WN ++  + +  + +E+L +  KM   G+  N  +    ++ CS      +  G  L
Sbjct: 133 GVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACSSNFNGCKMFGTML 192

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H H IKLG + +++ V  AL+D Y+  GSL +A + FD +   +V+ +N++++     + 
Sbjct: 193 HDHAIKLG-LHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQET 251

Query: 294 IFD-----ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           I D     AL LFF M+ C  +PS+ ++   L       +  F KQ+H  + K G     
Sbjct: 252 IEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGL-LSD 310

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
            ++ S L D+Y     +  ++  F S    ++    +++   L +G  + A+ +F  ++ 
Sbjct: 311 EYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLT 370

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSRC 465
                DE   ST +     S+ AN+G  R    +   A K G         S +  Y++ 
Sbjct: 371 YEEKPDEFIFSTIM-----SSCANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKS 425

Query: 466 GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525
           G +  ++  F+++ +P++V +++++   +++G   EAL   E+M   G+ P+   FL VL
Sbjct: 426 GDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVL 485

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
             C+H G+V+EG   F++M+  Y +    +H  C++D+LGRAG L  AE L+ +     +
Sbjct: 486 IACSHRGLVEEGLRYFDTMEKDYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHE 545

Query: 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
            +MW +LL +CR+H + +  +RVA  ++ELEP+  A Y  + N Y + G    + ++R  
Sbjct: 546 PVMWRALLSACRIHKDTVTAQRVAQKVIELEPLASASYVLLYNIYMDAGNKLAASKVRTL 605

Query: 646 ALARKLTRDIGHSLIEV 662
              R++ ++ G S I++
Sbjct: 606 MEERRIKKEPGLSWIQI 622



 Score =  147 bits (370), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 121/482 (25%), Positives = 226/482 (46%), Gaps = 17/482 (3%)

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
           P      + G +  A  LFD++ + N+ T+N ++  + ++S  D+V+ +++K +  G++ 
Sbjct: 6   PFSSRQCKCGDTRSADKLFDKMSKSNIVTYNSLISGYVQMSNLDKVMILFDKARRLGLKL 65

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +  +    +  CS    L  GK +H  ++  G +   + + N+L+D YS CG +  A+  
Sbjct: 66  DKYNCAGALTACSQSGNLSAGKMIHGLILVYG-LGSQVVLTNSLIDMYSKCGQVDYARIL 124

Query: 270 FDFIPVDDVISWNSIVSIY---ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT 326
           FD     D +SWNS+++ Y     Y+ +   L+   +  L     ++ S ++  + ++  
Sbjct: 125 FDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGLAFNTYTLGSALKACS-SNFN 183

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
           G   FG  +H +  KLG  H  V V +AL DMY K   ++ ++ +F+    +++   N++
Sbjct: 184 GCKMFGTMLHDHAIKLGL-HLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAM 242

Query: 387 MTSLLHSGNIKD-----AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
           M  LL    I+D     A+ +F  M   GI     T S+ LKA  +         + +H 
Sbjct: 243 MAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFA--KQVHA 300

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
              K+G  S+  +   L+D YS  G +  +   F  I +  +V  T+++ GY +NG    
Sbjct: 301 LMCKNGLLSDEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFES 360

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           AL +   ++     PD+  F  +++ C + GM++ G+ +      V GI       +  I
Sbjct: 361 ALSLFYELLTYEEKPDEFIFSTIMSSCANMGMLRSGEQIQGHATKV-GISRFTIFQNSQI 419

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME--LEPVD 619
            M  ++G L  A    QQ     D + WS+++ S   HG+ +   R   ++    +EP  
Sbjct: 420 WMYAKSGDLYAANLTFQQME-NPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNH 478

Query: 620 FA 621
           FA
Sbjct: 479 FA 480



 Score =  127 bits (320), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 88/372 (23%), Positives = 183/372 (49%), Gaps = 9/372 (2%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  ID + K G ++ A+ LFD     D V++N LI+G  +    ++ L +  +M  +G+
Sbjct: 105 TNSLIDMYSKCGQVDYARILFDHSDKLDGVSWNSLIAGYVQNGKYEELLTILQKMHQNGL 164

Query: 107 KESASTFSSVLSVCSN--AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
             +  T  S L  CS+   G    G  +H   + LG  L++ +G+ L+D+Y + G    A
Sbjct: 165 AFNTYTLGSALKACSSNFNGCKMFGTMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDA 224

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDE-----VLRMYNKMKAEGVEPNGLSFCYMVR 219
           + +FD++ ++N+  +N M+    +    ++      L ++ +MK+ G++P+  ++  +++
Sbjct: 225 IQIFDQMVDKNVVMYNAMMAGLLQQETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLK 284

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C I       KQ+H+ + K G +  + ++ + L+D YS  GS+++A   F+ I    ++
Sbjct: 285 ACIIVEDFKFAKQVHALMCKNGLLS-DEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIV 343

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
              +++  Y        AL LF+ +    ++P    F   ++  +  G +  G+QI G+ 
Sbjct: 344 PMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIFSTIMSSCANMGMLRSGEQIQGHA 403

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
           TK+G    ++  Q++   MY K   + ++   F+      +   ++++ S    G+  +A
Sbjct: 404 TKVGISRFTI-FQNSQIWMYAKSGDLYAANLTFQQMENPDIVSWSTMICSNAQHGHAMEA 462

Query: 400 VEMFGFMVDEGI 411
           +  F  M   GI
Sbjct: 463 LRFFELMKSCGI 474



 Score =  113 bits (282), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 85/328 (25%), Positives = 153/328 (46%), Gaps = 11/328 (3%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           ++L D   +    L++      +D + K+G L+ A ++FD+M  +++V YN +++G  + 
Sbjct: 190 TMLHDHAIKLGLHLDVVVGTALLDMYAKTGSLDDAIQIFDQMVDKNVVMYNAMMAGLLQQ 249

Query: 89  RHPK-----QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL 143
              +     +AL L+ EM S GIK S  T+SS+L  C     +    Q+H  +   G   
Sbjct: 250 ETIEDKCAYKALNLFFEMKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLS 309

Query: 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           + YIGS L+DLY  +G  + AL  F+ +    +     M+  + +    +  L ++ ++ 
Sbjct: 310 DEYIGSILIDLYSVLGSMMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELL 369

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
               +P+   F  ++  C+   +L  G+Q+  H  K+G     IF  N+ +  Y+  G L
Sbjct: 370 TYEEKPDEFIFSTIMSSCANMGMLRSGEQIQGHATKVGISRFTIF-QNSQIWMYAKSGDL 428

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
             A  +F  +   D++SW++++   A +    +AL  F  M+ C   P+  +F+  L   
Sbjct: 429 YAANLTFQQMENPDIVSWSTMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIAC 488

Query: 324 SRTGNV-----YFGKQIHGYVTKLGFDH 346
           S  G V     YF      Y  KL   H
Sbjct: 489 SHRGLVEEGLRYFDTMEKDYKMKLHVKH 516



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 64/292 (21%), Positives = 126/292 (43%), Gaps = 10/292 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGH 59
           M S  + P + T ++L   C  +     +  + +    N  L + Y  +  ID +   G 
Sbjct: 267 MKSCGIKPSMFTYSSLLKACIIVEDFKFAKQVHALMCKNGLLSDEYIGSILIDLYSVLGS 326

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A   F+ +    +V    +I G  +    + AL L+ E++++  K     FS+++S 
Sbjct: 327 MMDALLCFNSIHNLTIVPMTAMIFGYLQNGEFESALSLFYELLTYEEKPDEFIFSTIMSS 386

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           C+N G    G QI      +G        +  + +Y + G    A   F ++   ++ +W
Sbjct: 387 CANMGMLRSGEQIQGHATKVGISRFTIFQNSQIWMYAKSGDLYAANLTFQQMENPDIVSW 446

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           + M+ +  +     E LR +  MK+ G+EPN  +F  ++  CS   L++EG +    + K
Sbjct: 447 STMICSNAQHGHAMEALRFFELMKSCGIEPNHFAFLGVLIACSHRGLVEEGLRYFDTMEK 506

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKK-----SFDFIPVDDVISWNSIVS 286
              + +++     +VD     G L +A+       F+  PV     W +++S
Sbjct: 507 DYKMKLHVKHCVCVVDLLGRAGRLADAESLILRLGFEHEPV----MWRALLS 554


>gi|90265232|emb|CAH67767.1| H0322F07.4 [Oryza sativa Indica Group]
 gi|125550186|gb|EAY96008.1| hypothetical protein OsI_17879 [Oryza sativa Indica Group]
          Length = 719

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 174/642 (27%), Positives = 322/642 (50%), Gaps = 10/642 (1%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           +LL+ S    +P L  + +N+ +  + +   +  A  L    P   +V+YN ++S   + 
Sbjct: 39  ALLVVSSTPSSPALTTFLANQLLSLYARLSAVPDALALLRSTPRPSVVSYNTVLSALSRA 98

Query: 89  -RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
            RH  + L L+  + + G++ +A +  ++L           G   H +  +LGF  +  +
Sbjct: 99  PRHAPEGLRLFRRLHASGLRPTAPSLCALLRTAGELRDRRAGAAAHSQAATLGFLASDIV 158

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            + L+ +Y + G    A  +FDE+  R+   WN ++         D  L  + +M   G+
Sbjct: 159 PTALLQMYSQCGAPRDANQVFDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCQMVRGGL 218

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P   +   ++ GC        G+ LH  V+KL  +D ++ + NAL+D YS+CG L  A 
Sbjct: 219 PPTESTLSSVLSGCGRAGDCLRGRVLHGWVVKLEELDPDMPLQNALLDMYSSCGDLDTAL 278

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC----RKRPSIRSFVEFLNFA 323
           + F+ I   D++SWN++++ ++       A+  F +++      R  P   +    ++ +
Sbjct: 279 RVFERIETPDLVSWNTLIAGFSGVGDGCSAMHAFVQLKAVQFDERVVPDEYTLAAVVSAS 338

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +    ++ GK +H  V K G ++ SV V + L +MY   +   S+  +F+S   + +   
Sbjct: 339 ATLPAMFGGKPLHAEVIKAGLEN-SVFVGNTLLNMYFTNDDPHSARILFDSITQKDVIMW 397

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
             ++      G  + A+  F  M+ EG  +D  +LS+ L   S +  A L    +LH   
Sbjct: 398 TEMVAGHSSLGEGELALMYFVSMLQEGYKVDSFSLSSALN--STTELAGLKQGEMLHAQV 455

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           +KSG+E NI  S SL+D Y++ G +  ++ VF  I  P++ C+ SI+ GY  +G    A 
Sbjct: 456 VKSGYEGNICASGSLVDMYAKNGALPGAYLVFRNIQRPDLKCWNSIIGGYGNHGNSEMAF 515

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
            +   MI+ GL PD VT++ +L+ C+H G+V++G+  +  M +  GI    +HY+ M+ +
Sbjct: 516 KLFGEMIRDGLQPDHVTYISILSACSHCGLVEKGKFYWFCMMT-DGIVPGFKHYTSMVSL 574

Query: 564 LGRAGILDKAEELLQQTPGGGDC-MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622
           LGRAG+LD+A +L+ ++P    C  +W  LL SC    N  IG   A   +E +P D + 
Sbjct: 575 LGRAGLLDEAVDLMMKSPFAKKCPELWRILLSSCITFRNLSIGVHAAEQALEQDPDDIST 634

Query: 623 YSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +  +SN Y+ +G+++   +IR+        ++ G S +E+ +
Sbjct: 635 HILLSNLYASLGKWDFVAEIRKRMRGLMADKEPGLSWVEMKN 676


>gi|449453101|ref|XP_004144297.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
 gi|449521874|ref|XP_004167954.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g26540-like [Cucumis sativus]
          Length = 697

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 178/637 (27%), Positives = 322/637 (50%), Gaps = 43/637 (6%)

Query: 14  TTLAPTCTSIVPLSSSLLLDSYCQ---PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T L   C+S   L  +  ++S+     P P   I+  NR I+ + K G L  A++LFDEM
Sbjct: 63  TRLFQLCSSTRALVEARKVESHLATFCPTPP--IFLLNRAIEAYGKCGCLKDARELFDEM 120

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
           P RD  ++N +I+   +  +  +AL LY ++   G+  +  T +S+L  C +        
Sbjct: 121 PQRDGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYATEVTLASILRSCGSVLALHFSR 180

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH  ++  GF  N+ + S LVD+Y +      A  +FDE+  RN  +WN+++R + E+ 
Sbjct: 181 QIHGHIVKCGFVGNVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLEVG 240

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E + M+ +M  E + P+  +F   +  CS    L EG Q+H  V+K+G ++ N  ++
Sbjct: 241 NGKEAVSMFFQMFRESLMPSSFTFSNALIACSRMAALIEGGQIHGIVVKVG-LEENEVIS 299

Query: 251 NALVDFYSACGSL-------------------------------IEAKKSFDFIPVDDVI 279
           ++L+D Y  CG+L                               ++A++ F+ +P  +VI
Sbjct: 300 SSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGDVLKARELFNEMPERNVI 359

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN++++ Y       +ALE    M+   K     +    LN  + + +V  GKQ+HG+V
Sbjct: 360 SWNAMLAGYIHSSQWEEALEFVHLMRSSIKDIDRTTLCLILNVCTGSSDVERGKQVHGFV 419

Query: 340 TKLGFDHGSVHVQSALTDMYGKC-NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            + GF + ++++ +AL DMYGKC N+  + V  ++ +  R     N+L+T+    G  + 
Sbjct: 420 YRTGF-YANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGMSEQ 478

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +F  M  E    +  T +T L A +   +   G  + +H   +++ +  +I ++ +L
Sbjct: 479 AMTIFSEMQLE-TDPNNFTFATLLGACANMFALEHG--KQIHGFMVRNNYAIDIVLTGAL 535

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM-IQRGLIPD 517
           +D Y +C  ++ + +VFE + S +VV + SI+ G   N     A+ + ++M ++ G+ PD
Sbjct: 536 VDMYCKCRELKYALKVFEHVASRDVVLWNSIILGCCHNRRDMLAIKLFQLMTMEEGIKPD 595

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
            VTF  +L  C H  +V+ G+  F+SM   + +    +HY CM+++ G+ G +D+ E+ +
Sbjct: 596 HVTFQGILLACLHENLVELGRKYFDSMSEKFCVIPRLEHYECMVELYGQHGNMDELEKFI 655

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614
              P      M   +  +CR HG+  +   VA  L E
Sbjct: 656 NNMPFDPTVPMLERIFNACREHGHSRLAEWVAIRLNE 692



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 123/519 (23%), Positives = 242/519 (46%), Gaps = 41/519 (7%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           + ++ +  +CS+     E  ++   + +      +++ +  ++ Y + G    A +LFDE
Sbjct: 60  TLYTRLFQLCSSTRALVEARKVESHLATFCPTPPIFLLNRAIEAYGKCGCLKDARELFDE 119

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P+R+  +WN M+ A+ +     E L +Y  +   GV    ++   ++R C   + L   
Sbjct: 120 MPQRDGGSWNAMITAYTQNGYALEALNLYLDLNKSGVYATEVTLASILRSCGSVLALHFS 179

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+H H++K G+V  N+ + ++LVD Y  C  + +A+  FD I   + +SWN IV  Y +
Sbjct: 180 RQIHGHIVKCGFVG-NVILESSLVDVYGKCRLMNDARSMFDEIQNRNDVSWNVIVRRYLE 238

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +A+ +FF+M      PS  +F   L   SR   +  G QIHG V K+G +   V 
Sbjct: 239 VGNGKEAVSMFFQMFRESLMPSSFTFSNALIACSRMAALIEGGQIHGIVVKVGLEENEV- 297

Query: 351 VQSALTDMYGKCNVIESSVAVFESA-------------------------------PGRS 379
           + S+L DMY KC  + ++  VF                                  P R+
Sbjct: 298 ISSSLIDMYVKCGTLANAHQVFTQPSSRNLISWTSMVYAYATSGDVLKARELFNEMPERN 357

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           +   N+++   +HS   ++A+E    M      +D  TL   L   + S+    G  + +
Sbjct: 358 VISWNAMLAGYIHSSQWEEALEFVHLMRSSIKDIDRTTLCLILNVCTGSSDVERG--KQV 415

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGM 498
           H    ++GF +N+ +  +L+D Y +CG+++ +   F ++    + V + +++  ++R+GM
Sbjct: 416 HGFVYRTGFYANLYIGNALLDMYGKCGNLKSAKVWFYQMSQWRDKVSWNALLTAHARHGM 475

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQHY 557
             +A+ +   M Q    P+  TF  +L  C +   ++ G+ +   M ++ Y ID      
Sbjct: 476 SEQAMTIFSEM-QLETDPNNFTFATLLGACANMFALEHGKQIHGFMVRNNYAIDIVLT-- 532

Query: 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSC 596
             ++DM  +   L  A ++ +      D ++W+S++  C
Sbjct: 533 GALVDMYCKCRELKYALKVFEHV-ASRDVVLWNSIILGC 570


>gi|224129792|ref|XP_002320672.1| predicted protein [Populus trichocarpa]
 gi|222861445|gb|EEE98987.1| predicted protein [Populus trichocarpa]
          Length = 720

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 162/527 (30%), Positives = 283/527 (53%), Gaps = 15/527 (2%)

Query: 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           N++  + L+  Y +      A  LFD++P+ +L ++N ++ A+ +       L ++ +M+
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 204 AEGVEPNGLSFCYMVRGC--SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
             G+  +G +F  ++  C   +G++    +QLHS     G+ D  + V N+L+ +YS  G
Sbjct: 133 EMGLVMDGFTFSGVITACCNHVGLI----RQLHSLAFSSGF-DSYVSVKNSLLTYYSKNG 187

Query: 262 SLIEAKKSFDFI--PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319
            L EA+  F+ +   V D +SWNS++  Y  +     AL L+  M        + +    
Sbjct: 188 ILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASV 247

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV-IESSVAVFESAPGR 378
           L   S   ++  G Q H    K GF+    HV S L DMY KC   +  S  VFE   G 
Sbjct: 248 LTTFSCVEDLSGGLQFHAKAIKTGFNKNR-HVGSGLIDMYAKCGAGMSESRKVFEEICGS 306

Query: 379 SLECCNSLMTSLLHSGNIK-DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
            L   N++++    +  +  +A+E F  M   G   D+ +    + A S  +S + G  +
Sbjct: 307 DLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQG--K 364

Query: 438 LLHCCAIKSGFESN-IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
             H  A+KS   SN I+V+ +L+  YS+CG+++ + ++F+++P  N V   SI+ GY+++
Sbjct: 365 QFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQH 424

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
           G+G E+L++ E M+   + P  +T + +L+ C H+G V+EG+  FN MK ++GI+ + +H
Sbjct: 425 GIGTESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGKKYFNMMKDIFGIEPEAEH 484

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           YSCMID+LGRAG L +AE L+   P       W++LL +CR +GN  +  + AN  ++LE
Sbjct: 485 YSCMIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYGNMELAEKAANQFLQLE 544

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           P +   Y  +++ YS   ++E + +IR+    R + +  G S IE+N
Sbjct: 545 PTNAVPYIMLASMYSAARKWEEAARIRKLMRDRGIRKKPGCSWIELN 591



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 120/461 (26%), Positives = 213/461 (46%), Gaps = 11/461 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++S N  I  + K   ++ A  LFD++P  D+V++N LI+          AL L+ EM 
Sbjct: 73  NVFSFNALIAAYAKESLIHVAHHLFDQIPQPDLVSFNTLINAYADRGDTLSALSLFGEMR 132

Query: 103 SHGIKESASTFSSVLSVCSN-AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             G+     TFS V++ C N  G      Q+H    S GF   + + + L+  Y + G  
Sbjct: 133 EMGLVMDGFTFSGVITACCNHVGLIR---QLHSLAFSSGFDSYVSVKNSLLTYYSKNGIL 189

Query: 162 VRALDLFDELPE--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
             A  +F+ + E  R+  +WN M+ A+ +  R  + L +Y  M   G E +  +   ++ 
Sbjct: 190 EEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFTLASVLT 249

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS-LIEAKKSFDFIPVDDV 278
             S    L  G Q H+  IK G+ + N  V + L+D Y+ CG+ + E++K F+ I   D+
Sbjct: 250 TFSCVEDLSGGLQFHAKAIKTGF-NKNRHVGSGLIDMYAKCGAGMSESRKVFEEICGSDL 308

Query: 279 ISWNSIVSIYA-DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           + WN+++S Y+ + +L  +ALE F +MQ     P   SFV  ++  S   +   GKQ H 
Sbjct: 309 VVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPSQGKQFHA 368

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
              K       + V +AL  MY KC  ++ +  +F+  P  +    NS++      G   
Sbjct: 369 LAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGT 428

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +++ +F  M+   I    +TL + L A + +     G  +  +      G E        
Sbjct: 429 ESLNLFEQMLAASIAPTSITLVSILSACAHTGRVEEGK-KYFNMMKDIFGIEPEAEHYSC 487

Query: 458 LMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG 497
           ++D   R G +  + ++ + +P SP    + +++    + G
Sbjct: 488 MIDLLGRAGKLSEAERLIDTMPFSPGSAAWAALLGACRKYG 528



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 102/407 (25%), Positives = 185/407 (45%), Gaps = 47/407 (11%)

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           SF  +++ C     L  GK LH+  +K   +  + +++N  +  YS C  L  A  +F+ 
Sbjct: 10  SFRQILKSCIANKDLLTGKSLHTIYLK-SLIPSSTYLSNHFILLYSKCNLLTTAHHAFNQ 68

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV--- 329
               +V S+N++++ YA   LI  A  LF ++     +P + SF   +N  +  G+    
Sbjct: 69  THEPNVFSFNALIAAYAKESLIHVAHHLFDQI----PQPDLVSFNTLINAYADRGDTLSA 124

Query: 330 --YFG----------------------------KQIHGYVTKLGFDHGSVHVQSALTDMY 359
              FG                            +Q+H      GFD   V V+++L   Y
Sbjct: 125 LSLFGEMREMGLVMDGFTFSGVITACCNHVGLIRQLHSLAFSSGFD-SYVSVKNSLLTYY 183

Query: 360 GKCNVIESSVAVFE--SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
            K  ++E +  VF       R     NS++ +         A+ ++  MV  G  +D  T
Sbjct: 184 SKNGILEEAEMVFNGMGEEVRDEVSWNSMIVAYGQHKRGLKALALYRDMVHRGFEIDMFT 243

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH-IELSHQVFE 476
           L++ L   + S   +L      H  AIK+GF  N  V   L+D Y++CG  +  S +VFE
Sbjct: 244 LASVLT--TFSCVEDLSGGLQFHAKAIKTGFNKNRHVGSGLIDMYAKCGAGMSESRKVFE 301

Query: 477 KIPSPNVVCFTSIMNGYSRNG-MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           +I   ++V + ++++GYS+N  +  EAL+    M + G  PD  +F+C ++ C++     
Sbjct: 302 EICGSDLVVWNTMISGYSQNKELSVEALECFRQMQRAGYWPDDCSFVCAISACSNLSSPS 361

Query: 536 EGQLVFNSMKSVYGIDADRQHY-SCMIDMLGRAGILDKAEELLQQTP 581
           +G+  F+++     I +++    + ++ M  + G L  A +L Q+ P
Sbjct: 362 QGK-QFHALAMKSEIPSNQISVNNALVTMYSKCGNLQDARKLFQRMP 407



 Score = 61.6 bits (148), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 44/149 (29%), Positives = 74/149 (49%), Gaps = 4/149 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P   I  +N  +  + K G+L  A+KLF  MP  + VT N +I+G  +     ++L L++
Sbjct: 376 PSNQISVNNALVTMYSKCGNLQDARKLFQRMPQHNTVTLNSIIAGYAQHGIGTESLNLFE 435

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMR 157
           +M++  I  ++ T  S+LS C++ G   EG + +  ++   FG+       S ++DL  R
Sbjct: 436 QMLAASIAPTSITLVSILSACAHTGRVEEG-KKYFNMMKDIFGIEPEAEHYSCMIDLLGR 494

Query: 158 MGPSVRALDLFDELP-ERNLATWNLMLRA 185
            G    A  L D +P     A W  +L A
Sbjct: 495 AGKLSEAERLIDTMPFSPGSAAWAALLGA 523


>gi|115458828|ref|NP_001053014.1| Os04g0463800 [Oryza sativa Japonica Group]
 gi|38347057|emb|CAE04357.2| OSJNBa0060P14.4 [Oryza sativa Japonica Group]
 gi|113564585|dbj|BAF14928.1| Os04g0463800 [Oryza sativa Japonica Group]
          Length = 767

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/620 (27%), Positives = 316/620 (50%), Gaps = 20/620 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH----GIKES 109
           + + G +  A +LFDEMP RD+V +  +ISGC       + L     MV      G + +
Sbjct: 155 YARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPN 214

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           + T  S L  C   G  + G  +H   +  G G    + S L  +Y +   +  A  LF 
Sbjct: 215 SRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFP 274

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           ELPE++L +W  ++ A+C     ++ + ++  M+  G++P+ +    ++ G      +  
Sbjct: 275 ELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRG 334

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GK  H+ +++  + D ++ + NAL+  Y+ C  +  A   F  +   D  SW+S+V  Y 
Sbjct: 335 GKTFHAAIVRRNFGD-SVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 290 DYDLIFDALELFFRMQLCRKRP---SIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFD 345
              L    LEL+  MQ   K        S +  ++  SR G +  G+  H Y  K L  +
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGE 453

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           + SV   +AL  MYG+C   + +  +F     + +   ++L++S  H G+ KDA+ ++  
Sbjct: 454 NSSV--ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQ 511

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAY 462
           M+ EG+  +  TL +      +S+ ANL +     L+H      G E ++++  +L+D Y
Sbjct: 512 MLTEGVKPNSATLVSV-----ISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG + ++ ++F+ +   +VV +  +++GY  +G   +AL +  +M +  + P+ +TFL
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L+ C H+G+V +G+ +F  M+  Y ++ + +HY+CM+D+LG++G L +AE+++   P 
Sbjct: 627 AILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +C++H N  +G RVA      +P +   Y  +SN Y    ++    ++
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKL 745

Query: 643 RETALARKLTRDIGHSLIEV 662
           R+      + + IG S I++
Sbjct: 746 RDMMKNHGVEKSIGWSTIDI 765



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 190/427 (44%), Gaps = 16/427 (3%)

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN +LR+    S     L  + +M+A G  P+  +   +    +    L  G  +H++ +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 239 KLGWV--DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           + G +  D ++ VA++LV  Y+ CGS+ +A + FD +P  DV++W +++S         +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 297 ALELFFRMQLCR----KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            L    RM         RP+ R+    L      G +  G  +HG+  K G  H    V 
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH-CPSVV 253

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           S+L  MY KC+  E +  +F   P + L    SL+ +   +G+ + AVE+F  M + G+ 
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQ 313

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            DEV +S  L  L   A    G  +  H   ++  F  ++ +  +L+  Y++C  ++++ 
Sbjct: 314 PDEVVISCLLAGLGNDAKVRGG--KTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAA 371

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF  +   +   ++S++  Y + G+  + L++   M  R    D+  +         S 
Sbjct: 372 TVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRD--KDEFEYDTNSLISIISS 429

Query: 533 MVKEGQLVFNSMKSVYGID----ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
             + G+L        Y I      +    + +I M GR G  D A ++        D + 
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVK-TKDVVT 488

Query: 589 WSSLLRS 595
           WS+L+ S
Sbjct: 489 WSALISS 495



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 133/240 (55%), Gaps = 2/240 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  + + G+ + A+K+F  +  +D+VT++ LIS      H K AL LYD+M++ G+
Sbjct: 458 ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGV 517

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K +++T  SV+S C+N      G  IH  V  +G   +L I + LVD+YM+ G    A  
Sbjct: 518 KPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARK 577

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD + ER++ TWN+M+  +       + L++++ M+   V+PN L+F  ++  C    L
Sbjct: 578 MFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGL 637

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
           +D+G++L + + +   ++ N+     +VD     G L EA+     +P++ D   W +++
Sbjct: 638 VDKGRELFTRMEEYS-LEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLL 696



 Score = 52.8 bits (125), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 21/189 (11%)

Query: 425 LSVSASANLGSCRL---LHCCAIKSGF---ESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           L  SA+A LG+  +   +H  +++ G    + ++AV+ SL+  Y+RCG +  + ++F+++
Sbjct: 112 LVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEM 171

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR----GLIPDKVTFLCVLAGCNHSGMV 534
           P  +VV +T++++G   NG   E L  L  M++     G  P+  T    L  C   G +
Sbjct: 172 PERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGEL 231

Query: 535 KEGQLVFNSMKSVYGIDADRQH----YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
             G  +       +G+ A   H     S +  M  +    + A  L  + P   D + W+
Sbjct: 232 SVGTCLHG-----FGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWT 285

Query: 591 SLLRS-CRV 598
           SL+ + CR 
Sbjct: 286 SLIGAYCRA 294


>gi|115461254|ref|NP_001054227.1| Os04g0672700 [Oryza sativa Japonica Group]
 gi|70663948|emb|CAE54552.2| OSJNBb0004A17.12 [Oryza sativa Japonica Group]
 gi|113565798|dbj|BAF16141.1| Os04g0672700 [Oryza sativa Japonica Group]
 gi|125592028|gb|EAZ32378.1| hypothetical protein OsJ_16588 [Oryza sativa Japonica Group]
          Length = 719

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 174/642 (27%), Positives = 321/642 (50%), Gaps = 10/642 (1%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           +LL+ S    +P L  + +N+ +  + +   +  A  L    P   +V+YN ++S   + 
Sbjct: 39  ALLVVSSTPSSPALTTFLANQLLSLYARLSAVPDALALLRSTPRPSVVSYNTVLSALSRA 98

Query: 89  -RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
            RH  + L L+  + + G++ +A +  ++L           G   H +  +LGF  +  +
Sbjct: 99  PRHAPEGLRLFRRLHASGLRPTAPSLCALLRTAGELRDRRAGAAAHSQAATLGFLASDIV 158

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            + L+ +Y + G    A  +FDE+  R+   WN ++         D  L  + +M   G+
Sbjct: 159 PTALLQMYSQCGAPRDANQVFDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCRMVRGGL 218

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P   +   ++ GC        G+ LH  V+KL  +D ++ + NAL+D YS+CG L  A 
Sbjct: 219 PPTESTLSSVLSGCGRAGDCLRGRVLHGWVVKLEELDPDMPLQNALLDMYSSCGDLDTAL 278

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC----RKRPSIRSFVEFLNFA 323
           + F+ I   D++SWN++++ ++       A+  F +++      R  P   +    ++ +
Sbjct: 279 RVFERIETPDLVSWNTLIAGFSGVGDGCSAVHAFVQLKAVQFDERVVPDEYTLAAVVSAS 338

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +    ++ GK +H  V K G ++ SV V + L +MY   +   S+  +F+S     +   
Sbjct: 339 ATLPAMFGGKPLHAEVIKAGLEN-SVFVGNTLLNMYFTNDDPHSARILFDSITQEDVIMW 397

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
             ++      G  + A+  F  M+ EG  +D  +LS+ L   S +  A L    +LH   
Sbjct: 398 TEMVAGHSSLGEGELALRYFVSMLQEGYKVDSFSLSSALN--STTELAGLKQGEMLHAQV 455

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           +KSG+E NI  S SL+D Y++ G +  ++ VF  I  P++ C+ SI+ GY  +G    A 
Sbjct: 456 VKSGYEGNICASGSLVDMYAKNGALPGAYLVFRNIQRPDLKCWNSIIGGYGNHGNSEMAF 515

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563
            +   MI+ GL PD VT++ +L+ C+H G+V++G+  +  M +  GI    +HY+ M+ +
Sbjct: 516 KLFGEMIRDGLQPDHVTYISILSACSHCGLVEKGKFYWFCMMT-DGIVPGFKHYTSMVSL 574

Query: 564 LGRAGILDKAEELLQQTPGGGDC-MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622
           LGRAG+LD+A +L+ ++P    C  +W  LL SC    N  IG   A   +E +P D + 
Sbjct: 575 LGRAGLLDEAVDLMMKSPFAKKCPELWRILLSSCITFRNLSIGVHAAEQALEQDPDDIST 634

Query: 623 YSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +  +SN Y+ +G+++   +IR+        ++ G S +E+ +
Sbjct: 635 HILLSNLYASLGKWDFVAEIRKRMRGLMADKEPGLSWVEMKN 676


>gi|38567725|emb|CAE76014.1| B1358B12.23 [Oryza sativa Japonica Group]
          Length = 918

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/620 (27%), Positives = 316/620 (50%), Gaps = 20/620 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH----GIKES 109
           + + G +  A +LFDEMP RD+V +  +ISGC       + L     MV      G + +
Sbjct: 155 YARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPN 214

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           + T  S L  C   G  + G  +H   +  G G    + S L  +Y +   +  A  LF 
Sbjct: 215 SRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFP 274

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           ELPE++L +W  ++ A+C     ++ + ++  M+  G++P+ +    ++ G      +  
Sbjct: 275 ELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRG 334

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GK  H+ +++  + D ++ + NAL+  Y+ C  +  A   F  +   D  SW+S+V  Y 
Sbjct: 335 GKTFHAAIVRRNFGD-SVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 290 DYDLIFDALELFFRMQLCRKRP---SIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFD 345
              L    LEL+  MQ   K        S +  ++  SR G +  G+  H Y  K L  +
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGE 453

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           + SV   +AL  MYG+C   + +  +F     + +   ++L++S  H G+ KDA+ ++  
Sbjct: 454 NSSV--ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQ 511

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAY 462
           M+ EG+  +  TL +      +S+ ANL +     L+H      G E ++++  +L+D Y
Sbjct: 512 MLTEGVKPNSATLVSV-----ISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG + ++ ++F+ +   +VV +  +++GY  +G   +AL +  +M +  + P+ +TFL
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L+ C H+G+V +G+ +F  M+  Y ++ + +HY+CM+D+LG++G L +AE+++   P 
Sbjct: 627 AILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +C++H N  +G RVA      +P +   Y  +SN Y    ++    ++
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKL 745

Query: 643 RETALARKLTRDIGHSLIEV 662
           R+      + + IG S I++
Sbjct: 746 RDMMKNHGVEKSIGWSTIDI 765



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 190/427 (44%), Gaps = 16/427 (3%)

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN +LR+    S     L  + +M+A G  P+  +   +    +    L  G  +H++ +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 239 KLGWV--DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           + G +  D ++ VA++LV  Y+ CGS+ +A + FD +P  DV++W +++S         +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 297 ALELFFRMQLCR----KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            L    RM         RP+ R+    L      G +  G  +HG+  K G  H    V 
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH-CPSVV 253

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           S+L  MY KC+  E +  +F   P + L    SL+ +   +G+ + AVE+F  M + G+ 
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQ 313

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            DEV +S  L  L   A    G  +  H   ++  F  ++ +  +L+  Y++C  ++++ 
Sbjct: 314 PDEVVISCLLAGLGNDAKVRGG--KTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAA 371

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF  +   +   ++S++  Y + G+  + L++   M  R    D+  +         S 
Sbjct: 372 TVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRD--KDEFEYDTNSLISIISS 429

Query: 533 MVKEGQLVFNSMKSVYGID----ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
             + G+L        Y I      +    + +I M GR G  D A ++        D + 
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVK-TKDVVT 488

Query: 589 WSSLLRS 595
           WS+L+ S
Sbjct: 489 WSALISS 495



 Score =  129 bits (325), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 133/240 (55%), Gaps = 2/240 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  + + G+ + A+K+F  +  +D+VT++ LIS      H K AL LYD+M++ G+
Sbjct: 458 ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGV 517

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K +++T  SV+S C+N      G  IH  V  +G   +L I + LVD+YM+ G    A  
Sbjct: 518 KPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARK 577

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD + ER++ TWN+M+  +       + L++++ M+   V+PN L+F  ++  C    L
Sbjct: 578 MFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGL 637

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
           +D+G++L + + +   ++ N+     +VD     G L EA+     +P++ D   W +++
Sbjct: 638 VDKGRELFTRMEEYS-LEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLL 696



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 21/189 (11%)

Query: 425 LSVSASANLGSCRL---LHCCAIKSGF---ESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           L  SA+A LG+  +   +H  +++ G    + ++AV+ SL+  Y+RCG +  + ++F+++
Sbjct: 112 LVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEM 171

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR----GLIPDKVTFLCVLAGCNHSGMV 534
           P  +VV +T++++G   NG   E L  L  M++     G  P+  T    L  C   G +
Sbjct: 172 PERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGEL 231

Query: 535 KEGQLVFNSMKSVYGIDADRQH----YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
             G  +       +G+ A   H     S +  M  +    + A  L  + P   D + W+
Sbjct: 232 SVGTCLHG-----FGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWT 285

Query: 591 SLLRS-CRV 598
           SL+ + CR 
Sbjct: 286 SLIGAYCRA 294


>gi|222629009|gb|EEE61141.1| hypothetical protein OsJ_15084 [Oryza sativa Japonica Group]
          Length = 897

 Score =  263 bits (673), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 168/620 (27%), Positives = 316/620 (50%), Gaps = 20/620 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH----GIKES 109
           + + G +  A +LFDEMP RD+V +  +ISGC       + L     MV      G + +
Sbjct: 155 YARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPN 214

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
           + T  S L  C   G  + G  +H   +  G G    + S L  +Y +   +  A  LF 
Sbjct: 215 SRTMESGLEACGVLGELSVGTCLHGFGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFP 274

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           ELPE++L +W  ++ A+C     ++ + ++  M+  G++P+ +    ++ G      +  
Sbjct: 275 ELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQPDEVVISCLLAGLGNDAKVRG 334

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GK  H+ +++  + D ++ + NAL+  Y+ C  +  A   F  +   D  SW+S+V  Y 
Sbjct: 335 GKTFHAAIVRRNFGD-SVLIGNALISMYAKCKQVDIAATVFRMLHQRDTDSWSSMVVAYC 393

Query: 290 DYDLIFDALELFFRMQLCRKRP---SIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFD 345
              L    LEL+  MQ   K        S +  ++  SR G +  G+  H Y  K L  +
Sbjct: 394 KAGLDLKCLELYREMQFRDKDEFEYDTNSLISIISSCSRLGRLRLGQSAHCYSIKHLAGE 453

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
           + SV   +AL  MYG+C   + +  +F     + +   ++L++S  H G+ KDA+ ++  
Sbjct: 454 NSSV--ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQ 511

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAY 462
           M+ EG+  +  TL +      +S+ ANL +     L+H      G E ++++  +L+D Y
Sbjct: 512 MLTEGVKPNSATLVSV-----ISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMY 566

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
            +CG + ++ ++F+ +   +VV +  +++GY  +G   +AL +  +M +  + P+ +TFL
Sbjct: 567 MKCGQLGIARKMFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFL 626

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L+ C H+G+V +G+ +F  M+  Y ++ + +HY+CM+D+LG++G L +AE+++   P 
Sbjct: 627 AILSACCHAGLVDKGRELFTRMEE-YSLEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPI 685

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W +LL +C++H N  +G RVA      +P +   Y  +SN Y    ++    ++
Sbjct: 686 EPDGGIWGTLLGACKMHDNFEMGLRVAKKAFASDPENDGYYILMSNSYGSAEKWNEIEKL 745

Query: 643 RETALARKLTRDIGHSLIEV 662
           R+      + + IG S I++
Sbjct: 746 RDMMKNHGVEKSIGWSTIDI 765



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 104/427 (24%), Positives = 190/427 (44%), Gaps = 16/427 (3%)

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN +LR+    S     L  + +M+A G  P+  +   +    +    L  G  +H++ +
Sbjct: 75  WNSLLRSRHRASDFASTLSAHRRMRASGARPSRFTAPLVASAAAELGALPVGAAVHAYSV 134

Query: 239 KLGWV--DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           + G +  D ++ VA++LV  Y+ CGS+ +A + FD +P  DV++W +++S         +
Sbjct: 135 RFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEMPERDVVAWTAVISGCVCNGQCGE 194

Query: 297 ALELFFRMQLCR----KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
            L    RM         RP+ R+    L      G +  G  +HG+  K G  H    V 
Sbjct: 195 GLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGELSVGTCLHGFGVKAGVGH-CPSVV 253

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           S+L  MY KC+  E +  +F   P + L    SL+ +   +G+ + AVE+F  M + G+ 
Sbjct: 254 SSLFSMYTKCDSTEDARILFPELPEKDLVSWTSLIGAYCRAGHAEKAVELFLGMEESGLQ 313

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            DEV +S  L  L   A    G  +  H   ++  F  ++ +  +L+  Y++C  ++++ 
Sbjct: 314 PDEVVISCLLAGLGNDAKVRGG--KTFHAAIVRRNFGDSVLIGNALISMYAKCKQVDIAA 371

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            VF  +   +   ++S++  Y + G+  + L++   M  R    D+  +         S 
Sbjct: 372 TVFRMLHQRDTDSWSSMVVAYCKAGLDLKCLELYREMQFRD--KDEFEYDTNSLISIISS 429

Query: 533 MVKEGQLVFNSMKSVYGID----ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
             + G+L        Y I      +    + +I M GR G  D A ++        D + 
Sbjct: 430 CSRLGRLRLGQSAHCYSIKHLAGENSSVANALISMYGRCGNFDVARKIFGMVK-TKDVVT 488

Query: 589 WSSLLRS 595
           WS+L+ S
Sbjct: 489 WSALISS 495



 Score =  129 bits (324), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 72/240 (30%), Positives = 133/240 (55%), Gaps = 2/240 (0%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  I  + + G+ + A+K+F  +  +D+VT++ LIS      H K AL LYD+M++ G+
Sbjct: 458 ANALISMYGRCGNFDVARKIFGMVKTKDVVTWSALISSYSHLGHSKDALLLYDQMLTEGV 517

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           K +++T  SV+S C+N      G  IH  V  +G   +L I + LVD+YM+ G    A  
Sbjct: 518 KPNSATLVSVISSCANLAALEHGELIHSHVKDVGLECDLSICTALVDMYMKCGQLGIARK 577

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD + ER++ TWN+M+  +       + L++++ M+   V+PN L+F  ++  C    L
Sbjct: 578 MFDSMLERDVVTWNVMISGYGMHGEAIQALKLFSMMERGNVKPNSLTFLAILSACCHAGL 637

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
           +D+G++L + + +   ++ N+     +VD     G L EA+     +P++ D   W +++
Sbjct: 638 VDKGRELFTRMEEYS-LEPNLKHYACMVDLLGKSGHLQEAEDVVSAMPIEPDGGIWGTLL 696



 Score = 52.8 bits (125), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 49/189 (25%), Positives = 90/189 (47%), Gaps = 21/189 (11%)

Query: 425 LSVSASANLGSCRL---LHCCAIKSGF---ESNIAVSCSLMDAYSRCGHIELSHQVFEKI 478
           L  SA+A LG+  +   +H  +++ G    + ++AV+ SL+  Y+RCG +  + ++F+++
Sbjct: 112 LVASAAAELGALPVGAAVHAYSVRFGLLEGDGSVAVASSLVYMYARCGSVRDAVRLFDEM 171

Query: 479 PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR----GLIPDKVTFLCVLAGCNHSGMV 534
           P  +VV +T++++G   NG   E L  L  M++     G  P+  T    L  C   G +
Sbjct: 172 PERDVVAWTAVISGCVCNGQCGEGLSYLVRMVRSAGDGGARPNSRTMESGLEACGVLGEL 231

Query: 535 KEGQLVFNSMKSVYGIDADRQH----YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
             G  +       +G+ A   H     S +  M  +    + A  L  + P   D + W+
Sbjct: 232 SVGTCLHG-----FGVKAGVGHCPSVVSSLFSMYTKCDSTEDARILFPELP-EKDLVSWT 285

Query: 591 SLLRS-CRV 598
           SL+ + CR 
Sbjct: 286 SLIGAYCRA 294


>gi|297844454|ref|XP_002890108.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297335950|gb|EFH66367.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 866

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 166/623 (26%), Positives = 316/623 (50%), Gaps = 8/623 (1%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L++   N  +  FV+ G+L  A  +F +M  R++ ++N+L+ G  K  +  +A+ LY  M
Sbjct: 127 LSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRM 186

Query: 102 VS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +   G+K    TF  VL  C        G ++H  V+  G+ L++ + + L+ +Y++ G 
Sbjct: 187 LWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGD 246

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD +P R++ +WN M+  + E     E L+++  M+   V+P+ ++   ++  
Sbjct: 247 VKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISA 306

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C +      G+ +H++VI  G+  V+I V N+L   Y   GS  EA+K F  +   D++S
Sbjct: 307 CELLGDRRLGRDIHAYVITTGFA-VDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVS 365

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           W +++S Y    L   A++ +  M     +P   +    L+  +  G++  G ++H    
Sbjct: 366 WTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAI 425

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
           K       V V + L +MY KC  I+ ++ +F + P +++    S++  L  +    +A+
Sbjct: 426 KARLI-SYVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL 484

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
             F  M    + L    ++ T    + +    L   + +H   +++G   +  +  +L+D
Sbjct: 485 IFFRQM---KMTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLD 541

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y RCG + ++   F      +V  +  ++ GYS  G G   +++ + M++  + PD++T
Sbjct: 542 MYVRCGRMNIAWNQFNS-QKKDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEIT 600

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           F+ +L GC  S MV++G + F+ M+  YG+  + +HY+C++D+LGRAG L +A + +Q+ 
Sbjct: 601 FISLLCGCGKSQMVRQGLMYFSKMEE-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKM 659

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
           P   D  +W +LL +CR+H N  +G   A  + EL+      Y  + N Y++ G++    
Sbjct: 660 PVTPDPAVWGALLNACRIHHNIDLGELSAQRIFELDKGSVGYYILLCNLYADCGKWREVA 719

Query: 641 QIRETALARKLTRDIGHSLIEVN 663
           ++R       LT D G S +EV 
Sbjct: 720 KVRRMMKENGLTVDAGCSWVEVK 742



 Score =  173 bits (439), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 111/419 (26%), Positives = 215/419 (51%), Gaps = 5/419 (1%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++A+ L + M    +      F +++ +C     + EG +++   LS    L++ +G+  
Sbjct: 76  EEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALSSMNSLSVELGNAF 135

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPN 210
           + +++R G  V A  +F ++ ERNL +WN+++  + +    DE + +Y++M    GV+P+
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYHRMLWVGGVKPD 195

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +F  ++R C     L  G+++H HV++ G+ +++I V NAL+  Y  CG +  A+  F
Sbjct: 196 VYTFPCVLRTCGGIPDLARGREVHVHVVRYGY-ELDIDVVNALITMYVKCGDVKSARLLF 254

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  D+ISWN+++S Y +  +  + L+LFF M+     P + +    ++     G+  
Sbjct: 255 DRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDRR 314

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G+ IH YV   GF    + V ++LT MY        +  +F     + +    ++++  
Sbjct: 315 LGRDIHAYVITTGF-AVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGY 373

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
            ++   + A++ +  M  + +  DE+T++  L A +     + G    LH  AIK+   S
Sbjct: 374 EYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV--ELHKLAIKARLIS 431

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            + V+ +L++ YS+C  I+ +  +F  IP  NV+ +TSI+ G   N    EAL     M
Sbjct: 432 YVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFFRQM 490



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 132/490 (26%), Positives = 232/490 (47%), Gaps = 14/490 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P V T   +  TC  I  L+    +  +  +   +L+I   N  I  +VK G + SA+ L
Sbjct: 194 PDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLL 253

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD MP RD++++N +ISG  +     + L L+  M    +     T +SV+S C   G  
Sbjct: 254 FDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSVISACELLGDR 313

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  IH  V++ GF +++ + + L  +Y+  G    A  LF  +  +++ +W  M+  +
Sbjct: 314 RLGRDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCKDIVSWTTMISGY 373

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                P++ +  Y  M  + V+P+ ++   ++  C+    LD G +LH   IK   +   
Sbjct: 374 EYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY- 432

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + VAN L++ YS C  + +A   F  IP  +VISW SI++     +  F+AL +FFR   
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFFRQMK 491

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSVHVQSALTDMYGKCNV 364
              +P+  +    L   +R G +  GK+IH +V  T +G D     + +AL DMY +C  
Sbjct: 492 MTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDD---FLPNALLDMYVRCGR 548

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +   F S   + +   N L+T     G     VE+F  MV   +  DE+T  + L  
Sbjct: 549 MNIAWNQFNSQK-KDVSSWNILLTGYSERGQGSVVVELFDRMVKARVRPDEITFISLLCG 607

Query: 425 LSVSASANLGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
              S     G   L++   ++  G   N+     ++D   R G ++ +H+  +K+P +P+
Sbjct: 608 CGKSQMVRQG---LMYFSKMEEYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664

Query: 483 VVCFTSIMNG 492
              + +++N 
Sbjct: 665 PAVWGALLNA 674



 Score =  134 bits (336), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/422 (23%), Positives = 205/422 (48%), Gaps = 15/422 (3%)

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           L   C   + +E +++ N M+   V  +   F  +VR C      +EG +++S  +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAHEEGSKVYSVALS-SM 124

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
             +++ + NA +  +   G+L++A   F  +   ++ SWN +V  YA      +A+ L+ 
Sbjct: 125 NSLSVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAICLYH 184

Query: 303 RM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           RM  +   +P + +F   L       ++  G+++H +V + G++   + V +AL  MY K
Sbjct: 185 RMLWVGGVKPDVYTFPCVLRTCGGIPDLARGREVHVHVVRYGYEL-DIDVVNALITMYVK 243

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  ++S+  +F+  P R +   N++++    +G   + +++F  M    +  D +TL++ 
Sbjct: 244 CGDVKSARLLFDRMPRRDIISWNAMISGYFENGMGHEGLKLFFAMRGLSVDPDLMTLTSV 303

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           + A  +     LG  R +H   I +GF  +I+V  SL   Y   G    + ++F ++   
Sbjct: 304 ISACELLGDRRLG--RDIHAYVITTGFAVDISVCNSLTQMYLYAGSWREAEKLFSRMDCK 361

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG---- 537
           ++V +T++++GY  N +  +A+D   +M Q  + PD++T   VL+ C   G +  G    
Sbjct: 362 DIVSWTTMISGYEYNFLPEKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELH 421

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           +L   +    Y I A+      +I+M  +   +DKA ++    P   + + W+S++   R
Sbjct: 422 KLAIKARLISYVIVANN-----LINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLR 475

Query: 598 VH 599
           ++
Sbjct: 476 LN 477


>gi|224106429|ref|XP_002314162.1| predicted protein [Populus trichocarpa]
 gi|222850570|gb|EEE88117.1| predicted protein [Populus trichocarpa]
          Length = 617

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 165/567 (29%), Positives = 298/567 (52%), Gaps = 12/567 (2%)

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L  E   HG   +    + ++S C+ +G +  GIQ H  +L LGF  N+YI S +VD+Y 
Sbjct: 56  LIAEFTRHGSLSNPYFLNKIVSFCAKSGSFHLGIQAHSTILKLGFISNVYICSAVVDMYA 115

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
           + G    A  LFD++P+R + TWN ++  +  ++ P   + ++ KM    +  +  S   
Sbjct: 116 KCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKMLKAAINVSAFSVSS 175

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
            + GCS     + G Q+H  ++K G +  N+ V  +LVD YS CG + +++  FD +   
Sbjct: 176 CLAGCSQLEAREVGTQVHGLILKTG-LGYNVVVGTSLVDMYSKCGDVDDSRLVFDHMVNR 234

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           +VI+W S+V+ Y+  +   +A+ L   M L   RP+  ++   L+  S    + +  Q+H
Sbjct: 235 NVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFSGPDCLSYCLQVH 294

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC----CNSLMTSLLH 392
             + +LG +  +V++ + L  +Y KC+   SS+  F+      + C     N+++     
Sbjct: 295 CCIIQLGLE-SNVYIAATLVTVYSKCS---SSLEDFKKVCSVVMTCDNIAWNAVIAGYSK 350

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
            G  ++A+  F  M   GI +D  TL++ + A+  S+    G  + +H    ++G+ S++
Sbjct: 351 LGRHEEALRCFHEMKQAGIDIDSYTLTSVVGAIGNSSFLEEG--KAMHALIHRTGYISHL 408

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V   L+  Y+RCG I  S +VF  +   +V+ + +++  ++ +G GREA+++ E M + 
Sbjct: 409 NVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWNALLTAFAHHGYGREAVELFEQMRKT 468

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILD 571
            + P+  TFL VL  C+H G V +G   F++MKS   ++  + +HY+ ++D  GRAG L+
Sbjct: 469 EIKPNSSTFLAVLCACSHVGFVDKGIEYFDTMKSDILLEPLKVEHYASLVDTFGRAGYLN 528

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           +AE  +   P      ++ +LL +  VHGN  I  R A  L+EL P D A Y  +S+  +
Sbjct: 529 EAEAFINSMPIVPAPSVYKALLSASLVHGNREIAARSAKKLLELWPNDPATYVLLSSVLT 588

Query: 632 EIGEFEVSMQIRETALARKLTRDIGHS 658
             G ++ +  +R+    R L +  G+S
Sbjct: 589 VDGNWDDAADLRKLMCDRGLRKKPGYS 615



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 138/489 (28%), Positives = 235/489 (48%), Gaps = 42/489 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  +  +D + K G ++SA+ LFD+MP R +VT+N LI G      PK A+ L+ +M+
Sbjct: 103 NVYICSAVVDMYAKCGEISSARVLFDQMPQRTVVTWNSLIYGYLAVNCPKIAIELFIKML 162

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              I  SA + SS L+ CS       G Q+H  +L  G G N+ +G+ LVD+Y + G   
Sbjct: 163 KAAINVSAFSVSSCLAGCSQLEAREVGTQVHGLILKTGLGYNVVVGTSLVDMYSKCGDVD 222

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            +  +FD +  RN+ TW  M+  + ++ +PDE + +  +M  + + PN +++  ++   S
Sbjct: 223 DSRLVFDHMVNRNVITWTSMVTGYSQIEKPDEAMALVKEMVLQDLRPNCVTYNSLLSSFS 282

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA-KKSFDFIPVDDVISW 281
               L    Q+H  +I+LG ++ N+++A  LV  YS C S +E  KK    +   D I+W
Sbjct: 283 GPDCLSYCLQVHCCIIQLG-LESNVYIAATLVTVYSKCSSSLEDFKKVCSVVMTCDNIAW 341

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF---GKQIHGY 338
           N++++ Y+      +AL  F  M+  +    I S+    +     GN  F   GK +H  
Sbjct: 342 NAVIAGYSKLGRHEEALRCFHEMK--QAGIDIDSYT-LTSVVGAIGNSSFLEEGKAMHAL 398

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + + G+    ++VQ+ L  MY +C  I  S  VF       +   N+L+T+  H G  ++
Sbjct: 399 IHRTGYI-SHLNVQNGLVSMYARCGAIGDSKRVFWFMEEHDVISWNALLTAFAHHGYGRE 457

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE------SNI 452
           AVE+F  M    I  +  T    L             C   H   +  G E      S+I
Sbjct: 458 AVELFEQMRKTEIKPNSSTFLAVL-------------CACSHVGFVDKGIEYFDTMKSDI 504

Query: 453 AVS-------CSLMDAYSRCGHIELSHQVFEK---IPSPNV---VCFTSIMNGYSRNGMG 499
            +         SL+D + R G++  +         +P+P+V   +   S+++G +R    
Sbjct: 505 LLEPLKVEHYASLVDTFGRAGYLNEAEAFINSMPIVPAPSVYKALLSASLVHG-NREIAA 563

Query: 500 REALDMLEV 508
           R A  +LE+
Sbjct: 564 RSAKKLLEL 572


>gi|242062998|ref|XP_002452788.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
 gi|241932619|gb|EES05764.1| hypothetical protein SORBIDRAFT_04g032540 [Sorghum bicolor]
          Length = 662

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 178/649 (27%), Positives = 312/649 (48%), Gaps = 12/649 (1%)

Query: 19  TCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY 78
           + T +VP +++ L     +    L+  S +  +  +   G    A  L  +MP    V+ 
Sbjct: 20  SATPLVPTTAAQLHALLLKSGHLLHCDSIHLLLGSYCACGRPFDAHNLLVQMPQPPPVSV 79

Query: 79  -NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL 137
            N L+         +QAL LY +M +        TF+     C++      G  +H R L
Sbjct: 80  SNTLLRSYTGLGFNRQALALYSQMRAF----DHLTFTFAAKACADLRRRRHGRAVHGRAL 135

Query: 138 SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLR 197
           + GFG + Y+ + LV +YMR    V A  +F  L  R   +WN ++    +  R +  L 
Sbjct: 136 TAGFGGDGYVQNALVSMYMRCRDVVSAEAVFGALRSRTTVSWNTVITGCVKDGRAERALE 195

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           ++  M   GV  +  +   ++  C+    L  G+ +H   +  G  +    V NAL+D Y
Sbjct: 196 VFETMVGRGVCIDRATVVSVLPACAQARDLHMGRAVHRLAVVRGLGNYAA-VKNALIDMY 254

Query: 258 SACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRS 315
             C SL +AK+ FD    D DV+SW +++  Y   D    A  L   M +  + +P+  +
Sbjct: 255 GKCRSLEDAKRVFDEDSYDKDVVSWTAMIGAYVLNDHASKAFALGSEMLVTSEAQPNAVT 314

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
            V  L+  +   +    K  H    +LG    +V V++AL D Y KC  +     V E  
Sbjct: 315 MVHLLSACTSLLSGKHAKCTHALCIRLGLGSDTV-VETALVDCYAKCGYMGMIDMVVEKG 373

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
             R+ E  N+ ++   H    K A+ +F  M+ E +  D  T+++ + A +   SA+L  
Sbjct: 374 SRRT-ETWNAAISGYTHREQGKKALALFKQMLAESVRPDSATMASVIPAYA--ESADLVQ 430

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            + +HCC +  G   +  ++  L++ Y++ G + ++ ++F+ +P  +VV +T+++ GY  
Sbjct: 431 AKNIHCCLLIRGCLGSTDIATGLINVYAKAGDLGVAWELFQCLPEKDVVAWTTVIAGYGM 490

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +G  + A+ +   MI+ G+ P+ VT   ++  C+H+GMV EG  +FN M+ V+G+  + +
Sbjct: 491 HGHAQTAILLYSRMIEMGVTPNTVTMASLMYSCSHAGMVDEGLRLFNDMRGVHGLMPNAE 550

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           HY C++DMLGRAG +++A  L+Q  P      +WS+LL +C +H N   G   A  L EL
Sbjct: 551 HYLCLVDMLGRAGRIEEAYRLIQDMPFEPSTSVWSALLGACVLHENVEFGEVAAKHLFEL 610

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           EP +   Y  +   Y+    +     +      R L +D G S+++  S
Sbjct: 611 EPDNVGNYVLLGKVYAAADRWSDVQDLWRVMEGRGLHKDPGSSVVDAKS 659


>gi|359359183|gb|AEV41088.1| putative pentatricopeptide [Oryza minuta]
          Length = 760

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 173/644 (26%), Positives = 321/644 (49%), Gaps = 14/644 (2%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           +LL+ S     P    + +N+ +  + +   +  A  L    P   +V+YN ++S   + 
Sbjct: 80  ALLVVSSTPSAPTPTTFLANQLLSLYARLSAIPDALALLRSTPHPSVVSYNTVLSALSRA 139

Query: 89  -RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI 147
            RH  +   L+  + + G++ +A +  ++L           G   H + ++LGF  +  +
Sbjct: 140 PRHAPEGFRLFRRLHASGLRPTAPSLCALLRAAGELRDRRAGAAAHSQAVTLGFLASDIV 199

Query: 148 GSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGV 207
            + L+ +Y + G    A  +FDE+  R+   WN ++         D  L  + +M   G+
Sbjct: 200 PTALLQMYSQCGAPRDANQVFDEMATRDGVAWNCVMHCNVRYGYLDRALGQFCRMVRGGL 259

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P   +   ++ GC        G+ LH  V+KL  +D ++ + NAL+D YS+CG L  A 
Sbjct: 260 PPTESTLSSVLSGCGRAGDCRRGRALHGWVVKLEELDPDMPLQNALLDMYSSCGDLETAL 319

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR----PSIRSFVEFLNFA 323
           + F+ I   D++SWN++++ ++       A++ F +++  +      P   +    ++  
Sbjct: 320 RVFERIETPDLVSWNTLIAGFSGVGDGCSAMDAFVQLKAVQFDEWVVPDEYTLAAVVSAC 379

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
           +    ++ GK +H  V K G +  SV V + L +MY       S+  +F S   + +   
Sbjct: 380 ATLPAMFGGKPLHAEVIKAGLE-SSVFVGNTLLNMYFTNEEPGSARILFHSLNQKDVIMW 438

Query: 384 NSLMT--SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             ++   SLL  G +  A++ F  M+ EG  +D  +LS+ L   S +  A L    +LH 
Sbjct: 439 TEMVAGHSLLGEGEM--ALKYFVSMLQEGYKVDSFSLSSALN--STAELAGLKQGEMLHA 494

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             +KSG+E NI  S SL+D Y++ G +  ++ VF  I  P++ C+ SI+ GY  +G    
Sbjct: 495 EVVKSGYEGNICASGSLVDMYAKNGALPGAYLVFSNIQKPDLKCWNSIIGGYGNHGNSEM 554

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A  +   MI+ GL PD VT++ +L+ C+H G+V++G+  +  M +  GI    +HY+ M+
Sbjct: 555 AFKLFGEMIRDGLQPDHVTYISLLSACSHCGLVEKGKFYWFCMMT-DGIVPGFKHYTSMV 613

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620
            +L RAG+L++A +L+ + P    C  +W  LL SC    N  IG   A   +E +P D 
Sbjct: 614 SLLSRAGLLEEAVDLMMKCPFTKKCPELWRILLSSCIPFRNLSIGVHAAEQALEQDPDDI 673

Query: 621 AVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           + +  +SN Y+ +G++++  +IR+      + ++ G S IE+ +
Sbjct: 674 STHVLLSNLYASVGKWDLVAEIRKRIRGLMVEKEPGQSWIEMKN 717


>gi|297844796|ref|XP_002890279.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297336121|gb|EFH66538.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 953

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 186/663 (28%), Positives = 320/663 (48%), Gaps = 19/663 (2%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNS 62
           T LLP   T   +   C  I  +   L +         + +++  N  +  +   G ++ 
Sbjct: 181 THLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSD 240

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A KLFD MP R++V++N +I                D           +T  +VL VC+ 
Sbjct: 241 ALKLFDIMPERNLVSWNSMIR------------VFSDNGDDGAFMPDVATVVTVLPVCAR 288

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G  +H   + L     L + + L+D+Y + G  + +  +F     +N+ +WN M
Sbjct: 289 EREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTM 348

Query: 183 LRAFCELSRPDEVLRMYNKMKA--EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
           +  F           +  +M A  E V+ + ++    V  C    +L   K+LH + +K 
Sbjct: 349 VGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVCFDESVLPSLKELHCYSLKQ 408

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
            +V  +  +ANA V  Y+ CGSL  A++ F  I    + SWN+++  YA       +L+ 
Sbjct: 409 EFV-YDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLDA 467

Query: 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360
             +M+     P   +    L+  S+  ++  GK++HG++ +   +   + V  ++  +Y 
Sbjct: 468 HLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLER-DLFVYLSVLSLYI 526

Query: 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
            C  + +   +F++    SL   N+++T  L +G  + A+ +F  MV  GI    +++ T
Sbjct: 527 HCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGISMMT 586

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
              A S+  S  LG  R  H  A+K   E N  ++CS++D Y++ G I  S +VF  +  
Sbjct: 587 VFGACSLLPSLRLG--REAHAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFNGLKE 644

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
            +   + +++ GY  +G  +EA+ + E M + G  PD +TFL VL  CNHSG++ EG   
Sbjct: 645 KSAASWNAMIMGYGMHGRAKEAIKLFEEMQRTGRNPDDLTFLGVLTACNHSGLLHEGLRY 704

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            + MKS +G+  + +HY+C+IDMLGRAG LD A  +  +     D  +W+SLL  CR+H 
Sbjct: 705 LDQMKSSFGLKPNLKHYACVIDMLGRAGQLDNALRVAAEMSEEPDVGIWNSLLSWCRIHQ 764

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           N  +G +VA  L  LEP     Y  +SN Y+ +G+++   Q+R+      L +D G S I
Sbjct: 765 NLEMGEKVAAKLFVLEPEKPENYVLLSNLYAGLGKWDDVRQVRQRMKEMSLRKDAGCSWI 824

Query: 661 EVN 663
           E+N
Sbjct: 825 ELN 827



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 197/396 (49%), Gaps = 25/396 (6%)

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEP 209
           ++ +Y   G    +   FD L  +NL  WN ++ ++       EVL M+ KM ++  + P
Sbjct: 126 IITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLLP 185

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKS 269
           +  +F  +++ C+    +  G  +H  V+K G V+ ++FV NALV FY   G + +A K 
Sbjct: 186 DNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVE-DLFVGNALVSFYGTHGFVSDALKL 244

Query: 270 FDFIPVDDVISWNSIVSIYADY--DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
           FD +P  +++SWNS++ +++D   D  F               P + + V  L   +R  
Sbjct: 245 FDIMPERNLVSWNSMIRVFSDNGDDGAF--------------MPDVATVVTVLPVCARER 290

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
            +  GK +HG+  KL  D   V V +AL DMY K   I  S  +F+    +++   N+++
Sbjct: 291 EIGVGKGVHGWAVKLSLDKELV-VNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMV 349

Query: 388 TSLLHSGNIKDAVEMFGFMV--DEGIGLDEVTLSTTLKALSVSASAN-LGSCRLLHCCAI 444
                 G+I    ++   M+   E +  DEVT+   L A+ V    + L S + LHC ++
Sbjct: 350 GGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTI---LNAVPVCFDESVLPSLKELHCYSL 406

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           K  F  +  ++ + + +Y++CG +  + +VF  I S  +  + +++ GY+++   R +LD
Sbjct: 407 KQEFVYDELLANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLSLD 466

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
               M   GL+PD  T   +L+ C+    ++ G+ V
Sbjct: 467 AHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLGKEV 502



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 130/562 (23%), Positives = 253/562 (45%), Gaps = 35/562 (6%)

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS--HGI 106
           R I  +   G  + ++  FD + ++++  +N +IS   +     + L ++ +M+S  H +
Sbjct: 125 RIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHEVLEMFIKMISKTHLL 184

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
            ++  TF  V+  C+       G+ +H  V+  G   +L++G+ LV  Y   G    AL 
Sbjct: 185 PDNF-TFPCVIKACAGISDVGIGLAVHGLVVKTGLVEDLFVGNALVSFYGTHGFVSDALK 243

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LFD +PERNL +WN M+R F +    D+   M          P+  +   ++  C+    
Sbjct: 244 LFDIMPERNLVSWNSMIRVFSD--NGDDGAFM----------PDVATVVTVLPVCARERE 291

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           +  GK +H   +KL  +D  + V NAL+D YS  G +I+++  F      +V+SWN++V 
Sbjct: 292 IGVGKGVHGWAVKLS-LDKELVVNNALMDMYSKWGCIIDSQMIFKLNNNKNVVSWNTMVG 350

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG-------KQIHGYV 339
            ++    I    +L  R  L          V  LN       V F        K++H Y 
Sbjct: 351 GFSAEGDIHGTFDL-LRQMLAGSEDVKADEVTILNAVP----VCFDESVLPSLKELHCYS 405

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K  F +  + + +A    Y KC  +  +  VF     ++L   N+L+     S + + +
Sbjct: 406 LKQEFVYDEL-LANAFVASYAKCGSLSYAQRVFHGIRSKTLNSWNALIGGYAQSSDPRLS 464

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           ++    M + G+  D  T+ + L A S   S  LG  + +H   I++  E ++ V  S++
Sbjct: 465 LDAHLQMKNSGLLPDNFTVCSLLSACSKLKSLRLG--KEVHGFIIRNWLERDLFVYLSVL 522

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y  CG +     +F+ +   ++V + +++ G+ +NG    AL +   M+  G+ P  +
Sbjct: 523 SLYIHCGELCTVQVLFDAMEDNSLVSWNTVITGHLQNGFPERALGLFRQMVLYGIQPCGI 582

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC-MIDMLGRAGILDKAEELLQ 578
           + + V   C+    ++ G+       ++  +  D    +C +IDM  + G + ++ ++  
Sbjct: 583 SMMTVFGACSLLPSLRLGREA--HAYALKHLLEDNAFIACSIIDMYAKNGAITQSSKVFN 640

Query: 579 QTPGGGDCMMWSSLLRSCRVHG 600
                     W++++    +HG
Sbjct: 641 GLKEKS-AASWNAMIMGYGMHG 661



 Score = 95.1 bits (235), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/356 (23%), Positives = 162/356 (45%), Gaps = 32/356 (8%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL---------DEGKQLHSH 236
           FCE    D+  R+  +    G + +      +VR  ++G+LL         + G+++H  
Sbjct: 53  FCETGDLDKSFRVVQEFA--GDDESSSDVFLLVRE-ALGLLLQASGKRKDIEMGRKIHHL 109

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           V     +  +  +   ++  Y+ CGS  +++ +FD +   ++  WN+++S Y+  +L  +
Sbjct: 110 VSGSTRLRSDDVLCTRIITMYAMCGSPDDSRSAFDALRSKNLFQWNAVISSYSRNELYHE 169

Query: 297 ALELFFRM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
            LE+F +M       P   +F   +   +   +V  G  +HG V K G     + V +AL
Sbjct: 170 VLEMFIKMISKTHLLPDNFTFPCVIKACAGISDVGIGLAVHGLVVKTGLVE-DLFVGNAL 228

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
              YG    +  ++ +F+  P R+L   NS++     +G             D+G  + +
Sbjct: 229 VSFYGTHGFVSDALKLFDIMPERNLVSWNSMIRVFSDNG-------------DDGAFMPD 275

Query: 416 VTLSTTLKALSVSA-SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           V  +T +  L V A    +G  + +H  A+K   +  + V+ +LMD YS+ G I  S  +
Sbjct: 276 V--ATVVTVLPVCAREREIGVGKGVHGWAVKLSLDKELVVNNALMDMYSKWGCIIDSQMI 333

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI--QRGLIPDKVTFLCVLAGC 528
           F+   + NVV + +++ G+S  G      D+L  M+     +  D+VT L  +  C
Sbjct: 334 FKLNNNKNVVSWNTMVGGFSAEGDIHGTFDLLRQMLAGSEDVKADEVTILNAVPVC 389


>gi|15230248|ref|NP_189142.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75273633|sp|Q9LJR6.1|PP253_ARATH RecName: Full=Putative pentatricopeptide repeat-containing protein
           At3g25060, mitochondrial; Flags: Precursor
 gi|9293988|dbj|BAB01891.1| unnamed protein product [Arabidopsis thaliana]
 gi|332643452|gb|AEE76973.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 601

 Score =  263 bits (672), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 161/537 (29%), Positives = 281/537 (52%), Gaps = 12/537 (2%)

Query: 131 QIHCRVLSLGFGLN-LYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           QIH  V+S G  LN   I   L+    R+G    A  +FDELP+R ++ +N M+  +   
Sbjct: 35  QIHAFVISTGNLLNGSSISRDLIASCGRIGEISYARKVFDELPQRGVSVYNSMIVVYSRG 94

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
             PDEVLR+Y++M AE ++P+  +F   ++ C  G++L++G+ +    +  G+ + ++FV
Sbjct: 95  KNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWCKAVDFGYKN-DVFV 153

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ---L 306
            +++++ Y  CG + EA+  F  +   DVI W ++V+ +A       A+E +  MQ    
Sbjct: 154 CSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGF 213

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
            R R  +   +  L  +   G+   G+ +HGY+ + G     V V+++L DMY K   IE
Sbjct: 214 GRDRVVM---LGLLQASGDLGDTKMGRSVHGYLYRTGLPMNVV-VETSLVDMYAKVGFIE 269

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            +  VF     ++     SL++    +G    A E    M   G   D VTL   L A S
Sbjct: 270 VASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACS 329

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
              S   G  RL+HC  +K      +  + +LMD YS+CG +  S ++FE +   ++VC+
Sbjct: 330 QVGSLKTG--RLVHCYILKRHVLDRVTAT-ALMDMYSKCGALSSSREIFEHVGRKDLVCW 386

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            ++++ Y  +G G+E + +   M +  + PD  TF  +L+  +HSG+V++GQ  F+ M +
Sbjct: 387 NTMISCYGIHGNGQEVVSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQHWFSVMIN 446

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            Y I    +HY C+ID+L RAG +++A +++          +W +LL  C  H N  +G 
Sbjct: 447 KYKIQPSEKHYVCLIDLLARAGRVEEALDMINSEKLDNALPIWVALLSGCINHRNLSVGD 506

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             AN +++L P    + + VSNF++   +++   ++R+      + +  G+S IEVN
Sbjct: 507 IAANKILQLNPDSIGIQTLVSNFFATANKWKEVAKVRKLMRNGAMEKVPGYSAIEVN 563



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/422 (26%), Positives = 208/422 (49%), Gaps = 24/422 (5%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G ++ A+K+FDE+P R +  YN +I    + ++P + L LYD+M++  I+  +STF+  +
Sbjct: 64  GEISYARKVFDELPQRGVSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTI 123

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C +     +G  + C+ +  G+  ++++ S +++LYM+ G    A  LF ++ +R++ 
Sbjct: 124 KACLSGLVLEKGEAVWCKAVDFGYKNDVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVI 183

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHS 235
            W  M+  F +  +  + +  Y +M+ EG   + +    +++    G L D   G+ +H 
Sbjct: 184 CWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLLQAS--GDLGDTKMGRSVHG 241

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           ++ + G + +N+ V  +LVD Y+  G +  A + F  +     +SW S++S +A   L  
Sbjct: 242 YLYRTG-LPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLAN 300

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV---- 351
            A E    MQ    +P + + V  L   S+ G++  G+ +H Y+ K        HV    
Sbjct: 301 KAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYILKR-------HVLDRV 353

Query: 352 -QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
             +AL DMY KC  + SS  +FE    + L C N++++     GN ++ V +F  M +  
Sbjct: 354 TATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEVVSLFLKMTESN 413

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI---KSGFESNIAVSCSLMDAYSRCGH 467
           I  D  T ++ L ALS S     G     H  ++   K   + +      L+D  +R G 
Sbjct: 414 IEPDHATFASLLSALSHSGLVEQGQ----HWFSVMINKYKIQPSEKHYVCLIDLLARAGR 469

Query: 468 IE 469
           +E
Sbjct: 470 VE 471



 Score =  139 bits (351), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 109/428 (25%), Positives = 210/428 (49%), Gaps = 29/428 (6%)

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV-DFYSACGSLIE---AKKSFDFIPVDD 277
           SI  L     Q+H+ VI  G    N+   +++  D  ++CG + E   A+K FD +P   
Sbjct: 25  SISKLKRHITQIHAFVISTG----NLLNGSSISRDLIASCGRIGEISYARKVFDELPQRG 80

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
           V  +NS++ +Y+      + L L+ +M   + +P   +F   +        +  G+ +  
Sbjct: 81  VSVYNSMIVVYSRGKNPDEVLRLYDQMIAEKIQPDSSTFTMTIKACLSGLVLEKGEAVWC 140

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
                G+ +  V V S++ ++Y KC  ++ +  +F     R + C  +++T    +G   
Sbjct: 141 KAVDFGYKN-DVFVCSSVLNLYMKCGKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSL 199

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAV 454
            AVE +  M +EG G D V +   L+     AS +LG  ++   +H    ++G   N+ V
Sbjct: 200 KAVEFYREMQNEGFGRDRVVMLGLLQ-----ASGDLGDTKMGRSVHGYLYRTGLPMNVVV 254

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             SL+D Y++ G IE++ +VF ++     V + S+++G+++NG+  +A + +  M   G 
Sbjct: 255 ETSLVDMYAKVGFIEVASRVFSRMMFKTAVSWGSLISGFAQNGLANKAFEAVVEMQSLGF 314

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            PD VT + VL  C+  G +K G+LV   +   + +  DR   + ++DM  + G L  + 
Sbjct: 315 QPDLVTLVGVLVACSQVGSLKTGRLVHCYILKRHVL--DRVTATALMDMYSKCGALSSSR 372

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL-----EPVDFAVYSQVSNF 629
           E+ +   G  D + W++++    +HGN   G+ V ++ +++     EP D A ++ + + 
Sbjct: 373 EIFEHV-GRKDLVCWNTMISCYGIHGN---GQEVVSLFLKMTESNIEP-DHATFASLLSA 427

Query: 630 YSEIGEFE 637
            S  G  E
Sbjct: 428 LSHSGLVE 435



 Score =  114 bits (285), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 73/337 (21%), Positives = 158/337 (46%), Gaps = 7/337 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQP---NPQLNIYSSNRTIDDFVKS 57
           M++ K+ P   T T     C S + L     +  +C+      + +++  +  ++ ++K 
Sbjct: 107 MIAEKIQPDSSTFTMTIKACLSGLVLEKGEAV--WCKAVDFGYKNDVFVCSSVLNLYMKC 164

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G ++ A+ LF +M  RD++ +  +++G  +     +A+  Y EM + G          +L
Sbjct: 165 GKMDEAEVLFGKMAKRDVICWTTMVTGFAQAGKSLKAVEFYREMQNEGFGRDRVVMLGLL 224

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
               + G    G  +H  +   G  +N+ + + LVD+Y ++G    A  +F  +  +   
Sbjct: 225 QASGDLGDTKMGRSVHGYLYRTGLPMNVVVETSLVDMYAKVGFIEVASRVFSRMMFKTAV 284

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W  ++  F +    ++      +M++ G +P+ ++   ++  CS    L  G+ +H ++
Sbjct: 285 SWGSLISGFAQNGLANKAFEAVVEMQSLGFQPDLVTLVGVLVACSQVGSLKTGRLVHCYI 344

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +K   +D     A AL+D YS CG+L  +++ F+ +   D++ WN+++S Y  +    + 
Sbjct: 345 LKRHVLDR--VTATALMDMYSKCGALSSSREIFEHVGRKDLVCWNTMISCYGIHGNGQEV 402

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
           + LF +M      P   +F   L+  S +G V  G+ 
Sbjct: 403 VSLFLKMTESNIEPDHATFASLLSALSHSGLVEQGQH 439


>gi|39546235|emb|CAE04244.3| OSJNBa0089N06.5 [Oryza sativa Japonica Group]
 gi|125549842|gb|EAY95664.1| hypothetical protein OsI_17530 [Oryza sativa Indica Group]
 gi|215686910|dbj|BAG90780.1| unnamed protein product [Oryza sativa Japonica Group]
          Length = 559

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 165/558 (29%), Positives = 288/558 (51%), Gaps = 6/558 (1%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVR 163
           G K +A  +SS+L  C ++  + +G  +H RV +      +L++ + LV  Y R G    
Sbjct: 6   GAKPTAPLYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLVIFYARFGDVAA 65

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD +P R++ +W  M+  +    RP E L ++  M+A G  PN  ++      C+ 
Sbjct: 66  ARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAG 125

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                 G+Q+H+   K G    ++FV +AL+D +  CGS+ +A++ F  +   DV+SWN+
Sbjct: 126 AGCARSGEQVHACAAK-GRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNA 184

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++  + +     DAL LF  M      P   +    L      G     + IH  + KLG
Sbjct: 185 LIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLG 244

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI-KDAVEM 402
           +    V + S L + Y KC  + S+  +++S     L    +L++      N  +DA+E+
Sbjct: 245 YWDEKVVIGS-LINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMEL 303

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  +  +G+ +D V LS+ L   +  ASA  G+   +H    K     +IA+  +L+D Y
Sbjct: 304 FCKIHRKGLWIDGVLLSSVLCLCASVASARFGT--QIHAYMCKKQPMGDIALDNALVDMY 361

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++ G    + + F+++P  NV+ +TS++    RNG G +A+ +   M++ G+ P+ VTFL
Sbjct: 362 AKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFL 421

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L+ C H G+  +G   F SM S YGID   +HYS  ID+L R G L+ A +L+Q+T  
Sbjct: 422 SLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNL 481

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             +  M  ++L +C++HGN ++G   A  L  ++P     Y+ ++N Y+E   +E + + 
Sbjct: 482 KPNSSMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRT 541

Query: 643 RETALARKLTRDIGHSLI 660
           RE        +++G S+I
Sbjct: 542 REVIDETTDGKEVGFSVI 559



 Score =  168 bits (426), Expect = 8e-39,   Method: Compositional matrix adjust.
 Identities = 135/548 (24%), Positives = 261/548 (47%), Gaps = 49/548 (8%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ S + +  + + G + +A+K+FD MP R +V++  ++SG  +   P++AL L+  M 
Sbjct: 46  DLHLSTKLVIFYARFGDVAAARKVFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMR 105

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G + +  T+ S  S C+ AG    G Q+H       F  ++++ S L+D+++R G   
Sbjct: 106 ASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCGSVE 165

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF E+ ++++ +WN ++R F E     + L +++ M  E + P+  +    ++ C 
Sbjct: 166 DARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACG 225

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           I  +    + +HS +IKLG+ D  + + + L++ Y+ C S+  A+  +D I   D++S  
Sbjct: 226 IVGVAVNVELIHSCIIKLGYWDEKVVIGS-LINSYAKCRSMSSARVIYDSISEPDLVSST 284

Query: 283 SIVSIYA-DYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYV 339
           +++S Y  D +   DA+ELF ++   RK   I   +    L   +   +  FG QIH Y+
Sbjct: 285 ALISGYTMDRNYSEDAMELFCKIH--RKGLWIDGVLLSSVLCLCASVASARFGTQIHAYM 342

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K     G + + +AL DMY K      +   F+  P R++    SL+T+   +G+ +DA
Sbjct: 343 CKKQ-PMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDA 401

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           V +F  MV++G+  ++VT  + L A               HC     G E       S+M
Sbjct: 402 VTLFNRMVEDGVRPNDVTFLSLLSACG-------------HCGLTNKGME----YFTSMM 444

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y                  P    ++S ++  +R G   +A  +++   +  L P+  
Sbjct: 445 SRYG---------------IDPRAEHYSSAIDLLARGGQLEDAWKLVQ---KTNLKPNSS 486

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ-HYSCMIDMLGRAGILDKAE---E 575
               +L  C   G +  G+    + K+++ ID     +Y+ + +M     + + A+   E
Sbjct: 487 MLGAMLGACKLHGNMLLGE---TAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRTRE 543

Query: 576 LLQQTPGG 583
           ++ +T  G
Sbjct: 544 VIDETTDG 551



 Score = 77.0 bits (188), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 42/142 (29%), Positives = 74/142 (52%), Gaps = 2/142 (1%)

Query: 20  CTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY 78
           C S+        + +Y C+  P  +I   N  +D + K+G  + AK+ FDEMP R+++++
Sbjct: 326 CASVASARFGTQIHAYMCKKQPMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISW 385

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
             LI+ CG+    + A+ L++ MV  G++ +  TF S+LS C + G   +G++    ++S
Sbjct: 386 TSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMS 445

Query: 139 -LGFGLNLYIGSPLVDLYMRMG 159
             G        S  +DL  R G
Sbjct: 446 RYGIDPRAEHYSSAIDLLARGG 467


>gi|356546044|ref|XP_003541442.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g14730-like [Glycine max]
          Length = 628

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 172/573 (30%), Positives = 307/573 (53%), Gaps = 34/573 (5%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL-----VDLYMR---MGPSVRALD 166
           + L  C++    ++G ++H  +L      N + GSPL     +++Y +   +  S+R  +
Sbjct: 34  ATLQSCAHNANLSKGKELHTHLLK-----NAFFGSPLAITSLINMYSKCSLIDHSLRVFN 88

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
            F     +N+  +N ++  F   + P   L +YN+M+  G+ P+  +F  ++R C     
Sbjct: 89  -FPTHHNKNVFAYNALIAGFLANALPQRALALYNQMRHLGIAPDKFTFPCVIRACGDD-- 145

Query: 227 LDEG---KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
            D+G    ++H  + K+G +++++FV +ALV+ Y     + EA + F+ +PV DV+ WN+
Sbjct: 146 -DDGFVVTKIHGLMFKVG-LELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNA 203

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +V+ +A      +AL +F RM      P   +    L+  S  G+   G+ +HG+VTK+G
Sbjct: 204 MVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMG 263

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
           ++ G V V +AL DMYGKC  +  +++VFE      +   NS+M+     G+    + +F
Sbjct: 264 YESGVV-VSNALIDMYGKCKCVGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLF 322

Query: 404 GFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES--------NIAV 454
             M+    +  D VT++T L A +  A+   G  R +H   + +G           ++ +
Sbjct: 323 DRMMGSSRVQPDLVTVTTVLPACTHLAALMHG--REIHGYMVVNGLAKEESHDVFDDVLL 380

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           + +LMD Y++CG++  +  VF  +   +V  +  ++ GY  +G G EALD+   M Q  +
Sbjct: 381 NNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQM 440

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
           +P++++F+ +L+ C+H+GMVKEG    + M+S YG+    +HY+C+IDML RAG L +A 
Sbjct: 441 VPNEISFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAY 500

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           +L+   P   D + W SLL +CR+H +  +    A+ ++ELEP     Y  +SN Y  +G
Sbjct: 501 DLVLTMPFKADPVGWRSLLAACRLHNDTDLAEVAASKVIELEPDHCGNYVLMSNVYGVVG 560

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIE-VNSCH 666
            +E  ++ R T   + + +  G S IE VN  H
Sbjct: 561 RYEEVLEWRYTMKQQNVKKRPGCSWIELVNGVH 593



 Score =  155 bits (393), Expect = 6e-35,   Method: Compositional matrix adjust.
 Identities = 135/547 (24%), Positives = 243/547 (44%), Gaps = 60/547 (10%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +N+YS    ID  ++  +       F     +++  YN LI+G      P++AL LY++M
Sbjct: 71  INMYSKCSLIDHSLRVFN-------FPTHHNKNVFAYNALIAGFLANALPQRALALYNQM 123

Query: 102 VSHGIKESASTFSSVLSVCS--NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
              GI     TF  V+  C   + GF     +IH  +  +G  L++++GS LV+ Y++  
Sbjct: 124 RHLGIAPDKFTFPCVIRACGDDDDGFVV--TKIHGLMFKVGLELDVFVGSALVNTYLKFR 181

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +F+ELP R++  WN M+  F ++ R +E L ++ +M   GV P   +   ++ 
Sbjct: 182 FVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRRMGGNGVVPCRYTVTGVLS 241

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             S+    D G+ +H  V K+G+ +  + V+NAL+D Y  C  + +A   F+ +   D+ 
Sbjct: 242 IFSVMGDFDNGRAVHGFVTKMGY-ESGVVVSNALIDMYGKCKCVGDALSVFEMMDEIDIF 300

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQ-LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           SWNSI+S++      +  L LF RM    R +P + +    L   +    +  G++IHGY
Sbjct: 301 SWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGY 360

Query: 339 VTKLGFDHGSVH-------VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           +   G      H       + +AL DMY KC  +  +  VF +   + +   N ++T   
Sbjct: 361 MVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVNMREKDVASWNIMITGYG 420

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
             G   +A+++F  M    +  +E++    L A S             H   +K G    
Sbjct: 421 MHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACS-------------HAGMVKEGLG-- 465

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
                 L +  S+ G             SP++  +T +++   R G   EA D++  M  
Sbjct: 466 -----FLSEMESKYG------------VSPSIEHYTCVIDMLCRAGQLMEAYDLVLTMPF 508

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571
           +    D V +  +LA C         ++  + +     I+ +  H    + M    G++ 
Sbjct: 509 KA---DPVGWRSLLAACRLHNDTDLAEVAASKV-----IELEPDHCGNYVLMSNVYGVVG 560

Query: 572 KAEELLQ 578
           + EE+L+
Sbjct: 561 RYEEVLE 567



 Score =  120 bits (302), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 77/315 (24%), Positives = 167/315 (53%), Gaps = 11/315 (3%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L+++  +  ++ ++K   +  A ++F+E+P RD+V +N +++G  +    ++AL ++  
Sbjct: 164 ELDVFVGSALVNTYLKFRFVGEAYRVFEELPVRDVVLWNAMVNGFAQIGRFEEALGVFRR 223

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M  +G+     T + VLS+ S  G +  G  +H  V  +G+   + + + L+D+Y +   
Sbjct: 224 MGGNGVVPCRYTVTGVLSIFSVMGDFDNGRAVHGFVTKMGYESGVVVSNALIDMYGKCKC 283

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVR 219
              AL +F+ + E ++ +WN ++            LR++++M     V+P+ ++   ++ 
Sbjct: 284 VGDALSVFEMMDEIDIFSWNSIMSVHERCGDHYGTLRLFDRMMGSSRVQPDLVTVTTVLP 343

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWV-----DV--NIFVANALVDFYSACGSLIEAKKSFDF 272
            C+    L  G+++H +++  G       DV  ++ + NAL+D Y+ CG++ +A+  F  
Sbjct: 344 ACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALMDMYAKCGNMRDARMVFVN 403

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +   DV SWN +++ Y  +    +AL++F RM   +  P+  SFV  L+  S  G V   
Sbjct: 404 MREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEISFVGLLSACSHAGMV--- 460

Query: 333 KQIHGYVTKLGFDHG 347
           K+  G+++++   +G
Sbjct: 461 KEGLGFLSEMESKYG 475



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 50/200 (25%), Positives = 96/200 (48%), Gaps = 12/200 (6%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL---------NIYSSNRTI 51
           M S+++ P + T+TT+ P CT +  L     +  Y   N            ++  +N  +
Sbjct: 326 MGSSRVQPDLVTVTTVLPACTHLAALMHGREIHGYMVVNGLAKEESHDVFDDVLLNNALM 385

Query: 52  DDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           D + K G++  A+ +F  M  +D+ ++N++I+G G   +  +AL ++  M    +  +  
Sbjct: 386 DMYAKCGNMRDARMVFVNMREKDVASWNIMITGYGMHGYGGEALDIFSRMCQAQMVPNEI 445

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           +F  +LS CS+AG   EG+     + S  G   ++   + ++D+  R G  + A DL   
Sbjct: 446 SFVGLLSACSHAGMVKEGLGFLSEMESKYGVSPSIEHYTCVIDMLCRAGQLMEAYDLVLT 505

Query: 171 LP-ERNLATWNLMLRAFCEL 189
           +P + +   W  +L A C L
Sbjct: 506 MPFKADPVGWRSLLAA-CRL 524


>gi|225428334|ref|XP_002279974.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03880,
           mitochondrial [Vitis vinifera]
          Length = 623

 Score =  263 bits (672), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 150/481 (31%), Positives = 269/481 (55%), Gaps = 14/481 (2%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           FC        +R  + M+  GV  + +++  +++ CS    + EGK++H H+   G+ + 
Sbjct: 30  FCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQEGKRVHEHIFCKGY-EP 88

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY--DLIFDALELFFR 303
            +FV N L++ Y     L EA+  FD +P  +V+SW +++S Y++   D     L L FR
Sbjct: 89  KMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDKALKCLILMFR 148

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
             +   RP++ ++   L       N+   +Q+H  + K G +   V V+SAL D+Y K +
Sbjct: 149 EGV---RPNMFTYSSVLRACDGLPNL---RQLHCGIIKTGLE-SDVFVRSALIDVYSKWS 201

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +++++ VF+  P R L   NS++     + +  +A+ +F  M   G   D+ TL++ L+
Sbjct: 202 DLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLR 261

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
           A +  A   LG  R +H   +K  F+ ++ ++ +L+D Y +CG +E ++  F ++   +V
Sbjct: 262 ACTGLALLELG--RQVHVHVLK--FDQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDV 317

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           + +++++ G ++NG  R+AL++ E M + G  P+ +T L VL  C+H+G+V++G   F S
Sbjct: 318 ISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRS 377

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           MK ++G+D  R+HY C+ID+LGRAG LD+A +L+ +     D + W +LL +CRVH N  
Sbjct: 378 MKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTWRTLLGACRVHRNVD 437

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +    A  ++ELEP D   Y  +SN Y+    +E   ++R+T   R + +  G S IEV+
Sbjct: 438 LAIYAAKKIIELEPEDAGTYILLSNIYANTQRWEDVAEVRKTMTNRGIRKTPGCSWIEVD 497

Query: 664 S 664
            
Sbjct: 498 K 498



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/330 (31%), Positives = 170/330 (51%), Gaps = 9/330 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            ++  N  ++ +VK   L  A+ LFDEMP R++V++  +IS      + K AL     M 
Sbjct: 89  KMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYSNKLNDK-ALKCLILMF 147

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G++ +  T+SSVL  C          Q+HC ++  G   ++++ S L+D+Y +     
Sbjct: 148 REGVRPNMFTYSSVLRACDGLPNLR---QLHCGIIKTGLESDVFVRSALIDVYSKWSDLD 204

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            AL +FDE+P R+L  WN ++  F + S  +E L ++ +MK  G   +  +   ++R C+
Sbjct: 205 NALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRAGFLADQATLTSVLRACT 264

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              LL+ G+Q+H HV+K    D ++ + NAL+D Y  CGSL +A  +F  +   DVISW+
Sbjct: 265 GLALLELGRQVHVHVLKF---DQDLILNNALIDMYCKCGSLEDANSAFSRMVEKDVISWS 321

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++V+  A       ALELF  M+    RP+  + +  L   S  G V  G      + KL
Sbjct: 322 TMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACSHAGLVEKGWYYFRSMKKL 381

Query: 343 -GFDHGSVHVQSALTDMYGKCNVIESSVAV 371
            G D G  H    L D+ G+   ++ +V +
Sbjct: 382 FGVDPGREHY-GCLIDLLGRAGRLDEAVKL 410



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 104/359 (28%), Positives = 179/359 (49%), Gaps = 11/359 (3%)

Query: 71  PARDMVTYNLLISGCGKFRHP---KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
           P R +   + L++    F H     +A+   D M  HG+   A T+S ++  CS  G   
Sbjct: 13  PLRYVADPSPLVNEFANFCHQWDLHRAMRAMDAMERHGVFADAITYSELIKCCSARGAVQ 72

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
           EG ++H  +   G+   +++ + L+++Y++      A DLFDE+PERN+ +W  M+ A+ 
Sbjct: 73  EGKRVHEHIFCKGYEPKMFVVNTLLNMYVKFNLLEEAEDLFDEMPERNVVSWTTMISAYS 132

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
                D+ L+    M  EGV PN  ++  ++R C     L   +QLH  +IK G ++ ++
Sbjct: 133 N-KLNDKALKCLILMFREGVRPNMFTYSSVLRACD---GLPNLRQLHCGIIKTG-LESDV 187

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV +AL+D YS    L  A   FD +P  D++ WNSI+  +A      +AL LF RM+  
Sbjct: 188 FVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMKRA 247

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
                  +    L   +    +  G+Q+H +V K  FD   + + +AL DMY KC  +E 
Sbjct: 248 GFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLI-LNNALIDMYCKCGSLED 304

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           + + F     + +   ++++  L  +G  + A+E+F  M + G   + +T+   L A S
Sbjct: 305 ANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACS 363



 Score =  102 bits (254), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 65/244 (26%), Positives = 116/244 (47%), Gaps = 3/244 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  ID + K   L++A  +FDEMP RD+V +N +I G  +     +AL L+  M 
Sbjct: 186 DVFVRSALIDVYSKWSDLDNALGVFDEMPTRDLVVWNSIIGGFAQNSDGNEALNLFKRMK 245

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G     +T +SVL  C+       G Q+H  VL   F  +L + + L+D+Y + G   
Sbjct: 246 RAGFLADQATLTSVLRACTGLALLELGRQVHVHVLK--FDQDLILNNALIDMYCKCGSLE 303

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   F  + E+++ +W+ M+    +     + L ++  MK  G  PN ++   ++  CS
Sbjct: 304 DANSAFSRMVEKDVISWSTMVAGLAQNGYSRQALELFESMKESGSRPNYITVLGVLFACS 363

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              L+++G      + KL  VD        L+D     G L EA K    +  + D ++W
Sbjct: 364 HAGLVEKGWYYFRSMKKLFGVDPGREHYGCLIDLLGRAGRLDEAVKLIHEMECEPDSVTW 423

Query: 282 NSIV 285
            +++
Sbjct: 424 RTLL 427


>gi|302782567|ref|XP_002973057.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
 gi|300159658|gb|EFJ26278.1| hypothetical protein SELMODRAFT_98472 [Selaginella moellendorffii]
          Length = 531

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 149/537 (27%), Positives = 287/537 (53%), Gaps = 36/537 (6%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A  +FD +  R+  +W  M+ ++      DE L +Y +M A+G++P+ ++
Sbjct: 1   MYGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSIT 60

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           F   +  C+    L +GK +H+ ++       + FV +AL++ Y+ CG +  A+++F+ I
Sbjct: 61  FTSALLACTK---LADGKAIHARIVSSNM--ESDFVGSALINMYARCGDVSSARQAFEKI 115

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
               V+ W S+++ Y       +AL+L+ RM          ++V  L   +  G +  GK
Sbjct: 116 QNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGK 175

Query: 334 QIHGYVTKLGFDHGSVH----------------------------VQSALTDMYGKCNVI 365
            IH  V++ GF    VH                            VQ+AL  MY KC  +
Sbjct: 176 AIHLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSL 235

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           E + + FE++  + L   N+++ +    G  ++A++++  M  +G+  DEVT++++L A 
Sbjct: 236 ELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSAC 295

Query: 426 SVSASANLGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
           ++S S  LG  R +H   +K+  F+S++ V  +L++ Y RCG +E +  +FE +   +V+
Sbjct: 296 AISGSLQLG--REIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVL 353

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +T++ + Y++ G   + LD+   M+  G+ P+++TF  +L GC+H+G++  G   F  M
Sbjct: 354 SWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCSHAGLLARGVECFLEM 413

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
           +S + +   R+H+ CM+D+LGR+G L  AE L++  P   D + W ++L SC+ H +   
Sbjct: 414 QSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDSVAWLTVLGSCKTHSDADT 473

Query: 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
            +R A  + EL+P + ++YS +S+ ++  G  + +++++ +     L +  G SLIE
Sbjct: 474 AKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSMKEMGLKKPPGQSLIE 530



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 146/568 (25%), Positives = 260/568 (45%), Gaps = 83/568 (14%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A+K+FD +  RD V++  +IS         +AL LY +M + GI+  + TF
Sbjct: 2   YGKCGSVEEARKVFDGIKNRDAVSWTSMISSYANNGFCDEALDLYQQMDADGIQPDSITF 61

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +S L  C+      +G  IH R++S     + ++GS L+++Y R G    A   F+++  
Sbjct: 62  TSALLACTK---LADGKAIHARIVSSNMESD-FVGSALINMYARCGDVSSARQAFEKIQN 117

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           +++  W  ++ A+ +     E L +Y +M  EGV  +G+++   +  C+    L EGK +
Sbjct: 118 KHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADGVTYVTALGACASLGALKEGKAI 177

Query: 234 HSHV------------------IKLGWVDV----------NIFVANALVDFYSACGSLIE 265
           H  V                   K G +D           N+ V NALV  Y+ CGSL  
Sbjct: 178 HLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRLASNVAVQNALVTMYAKCGSLEL 237

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           AK +F+     D++SWN+++  YA + L  +AL+L+  M      P   +    L+  + 
Sbjct: 238 AKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMTSQGVLPDEVTIASSLSACAI 297

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
           +G++  G++IH  V K      S+ VQ+AL +MYG+C  +E++ ++FE    R +    +
Sbjct: 298 SGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRLETARSMFEDMGQRDVLSWTA 357

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           + +     G+    ++++  MV  GI  +E+T ++ L   S             H   + 
Sbjct: 358 MTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGCS-------------HAGLLA 404

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALD 504
            G E      C L         ++  H+V   +P   + +C   ++    R+G  R+A  
Sbjct: 405 RGVE------CFL--------EMQSEHEV---VPIREHFLCMVDLLG---RSGRLRDAEA 444

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCN-HSGMVKEGQLVFNSMKSVYGIDADRQH-YSCMID 562
           ++E M  +   PD V +L VL  C  HS    +      + + V  +D +    YS +  
Sbjct: 445 LVESMPYQ---PDSVAWLTVLGSCKTHS----DADTAKRAARRVKELDPENTSLYSLLSS 497

Query: 563 MLGRAGILDKAEEL--------LQQTPG 582
           +   AG+  +A E+        L++ PG
Sbjct: 498 IFTAAGLPQEALEVQLSMKEMGLKKPPG 525



 Score =  132 bits (332), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 163/358 (45%), Gaps = 35/358 (9%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I+ + + G ++SA++ F+++  + +V +  L++   +  H ++AL LY  M   G+    
Sbjct: 96  INMYARCGDVSSARQAFEKIQNKHVVCWTSLMTAYVQTGHYREALDLYGRMDHEGVHADG 155

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGF----------------------------- 141
            T+ + L  C++ G   EG  IH RV   GF                             
Sbjct: 156 VTYVTALGACASLGALKEGKAIHLRVSECGFQSLVVHTALLTMYAKCGELDAARAVFNRL 215

Query: 142 GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201
             N+ + + LV +Y + G    A   F+    ++L +WN M+ A+ +     E L +Y  
Sbjct: 216 ASNVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQT 275

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M ++GV P+ ++    +  C+I   L  G+++HS V+K      ++ V  ALV+ Y  CG
Sbjct: 276 MTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCG 335

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
            L  A+  F+ +   DV+SW ++ S+YA        L+L+  M L   RP+  +F   L 
Sbjct: 336 RLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILV 395

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS---ALTDMYGKCNVIESSVAVFESAP 376
             S  G +  G +      ++  +H  V ++     + D+ G+   +  + A+ ES P
Sbjct: 396 GCSHAGLLARGVEC---FLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMP 450



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 58/189 (30%), Positives = 99/189 (52%), Gaps = 1/189 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+   N  +  + K G L  AK  F+    +D+V++N +I    +    ++AL LY  M 
Sbjct: 218 NVAVQNALVTMYAKCGSLELAKSAFEASGRKDLVSWNAMIGAYAQHGLGREALDLYQTMT 277

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPS 161
           S G+     T +S LS C+ +G    G +IH RVL +  F  +L + + LV++Y R G  
Sbjct: 278 SQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCGRL 337

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F+++ +R++ +W  M   + +    D+VL +Y +M   G+ PN ++F  ++ GC
Sbjct: 338 ETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILVGC 397

Query: 222 SIGMLLDEG 230
           S   LL  G
Sbjct: 398 SHAGLLARG 406



 Score = 63.5 bits (153), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 64/253 (25%), Positives = 99/253 (39%), Gaps = 39/253 (15%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP--QLNIYSSNRTIDDFVKSG 58
           M S  +LP   TI +    C     L     + S    N   Q ++      ++ + + G
Sbjct: 276 MTSQGVLPDEVTIASSLSACAISGSLQLGREIHSRVLKNQSFQSSLMVQTALVNMYGRCG 335

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            L +A+ +F++M  RD++++  + S   +  H  Q L LY EMV HGI+ +  TF+S+L 
Sbjct: 336 RLETARSMFEDMGQRDVLSWTAMTSVYAQQGHADQVLDLYLEMVLHGIRPNEITFTSILV 395

Query: 119 VCSNAGFYTEGIQIH-----------------CRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            CS+AG    G++                   C V  LG    L     LV+       S
Sbjct: 396 GCSHAGLLARGVECFLEMQSEHEVVPIREHFLCMVDLLGRSGRLRDAEALVESMPYQPDS 455

Query: 162 V-------------------RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM 202
           V                   RA     EL   N + ++L+   F     P E L +   M
Sbjct: 456 VAWLTVLGSCKTHSDADTAKRAARRVKELDPENTSLYSLLSSIFTAAGLPQEALEVQLSM 515

Query: 203 KAEGV-EPNGLSF 214
           K  G+ +P G S 
Sbjct: 516 KEMGLKKPPGQSL 528


>gi|116312013|emb|CAJ86370.1| OSIGBa0117N13.14 [Oryza sativa Indica Group]
 gi|116312056|emb|CAJ86420.1| H0303G06.9 [Oryza sativa Indica Group]
          Length = 559

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 164/558 (29%), Positives = 288/558 (51%), Gaps = 6/558 (1%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVR 163
           G K +A  +SS+L  C ++  + +G  +H RV +      +L++ + L+  Y R G    
Sbjct: 6   GAKPTAPFYSSLLQCCISSCAFRQGKSVHGRVAAASASPPDLHLSTKLIIFYARFGDVAA 65

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +FD +P R++ +W  M+  +    RP E L ++  M+A G  PN  ++      C+ 
Sbjct: 66  ARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFALMRASGARPNQFTYGSAASACAG 125

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                 G+Q+H+   K G    ++FV +AL+D +  CGS+ +A++ F  +   DV+SWN+
Sbjct: 126 AGCARSGEQVHACAAK-GRFAGDMFVQSALMDMHLRCGSVEDARQLFAEMGKKDVVSWNA 184

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++  + +     DAL LF  M      P   +    L      G     + IH  + KLG
Sbjct: 185 LIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALKACGIVGVAVNVELIHSCIIKLG 244

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI-KDAVEM 402
           +    V + S L + Y KC  + S+  +++S     L    +L++      N  +DA+E+
Sbjct: 245 YWDEKVVIGS-LINSYAKCRSMSSARVIYDSISEPDLVSSTALISGYTMDRNYSEDAMEL 303

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
           F  +  +G+ +D V LS+ L   +  ASA  G+   +H    K     +IA+  +L+D Y
Sbjct: 304 FCKIHRKGLWIDGVLLSSVLCLCASVASARFGT--QIHAYMCKKQSMGDIALDNALVDMY 361

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++ G    + + F+++P  NV+ +TS++    RNG G +A+ +   M++ G+ P+ VTFL
Sbjct: 362 AKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFL 421

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +L+ C H G+  +G   F SM S YGID   +HYS  ID+L R G L+ A +L+Q+T  
Sbjct: 422 SLLSACGHCGLTNKGMEYFTSMMSRYGIDPRAEHYSSAIDLLARGGQLEDAWKLVQKTNL 481

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             +  M  ++L +C++HGN ++G   A  L  ++P     Y+ ++N Y+E   +E + + 
Sbjct: 482 KPNSSMLGAMLGACKLHGNMLLGETAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQRT 541

Query: 643 RETALARKLTRDIGHSLI 660
           RE        +++G S+I
Sbjct: 542 REVIDETTDGKEVGFSVI 559



 Score =  169 bits (429), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 138/551 (25%), Positives = 262/551 (47%), Gaps = 51/551 (9%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P L++  S + I  + + G + +A+K+FD MP R +V++  ++SG  +   P++AL L+ 
Sbjct: 45  PDLHL--STKLIIFYARFGDVAAARKMFDGMPHRSVVSWTAMVSGYARNGRPREALELFA 102

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M + G + +  T+ S  S C+ AG    G Q+H       F  ++++ S L+D+++R G
Sbjct: 103 LMRASGARPNQFTYGSAASACAGAGCARSGEQVHACAAKGRFAGDMFVQSALMDMHLRCG 162

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  LF E+ ++++ +WN ++R F E     + L +++ M  E + P+  +    ++
Sbjct: 163 SVEDARQLFAEMGKKDVVSWNALIRGFVERGHDGDALGLFSSMLKEAMIPDHYTLGSALK 222

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C I  +    + +HS +IKLG+ D  + + + L++ Y+ C S+  A+  +D I   D++
Sbjct: 223 ACGIVGVAVNVELIHSCIIKLGYWDEKVVIGS-LINSYAKCRSMSSARVIYDSISEPDLV 281

Query: 280 SWNSIVSIYA-DYDLIFDALELFFRMQLCRKRPSIRSFV--EFLNFASRTGNVYFGKQIH 336
           S  +++S Y  D +   DA+ELF ++   RK   I   +    L   +   +  FG QIH
Sbjct: 282 SSTALISGYTMDRNYSEDAMELFCKIH--RKGLWIDGVLLSSVLCLCASVASARFGTQIH 339

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
            Y+ K     G + + +AL DMY K      +   F+  P R++    SL+T+   +G+ 
Sbjct: 340 AYMCKKQ-SMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISWTSLITACGRNGSG 398

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           +DAV +F  MV++G+  ++VT  + L A               HC     G E       
Sbjct: 399 EDAVTLFNRMVEDGVRPNDVTFLSLLSACG-------------HCGLTNKGME----YFT 441

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           S+M  Y                  P    ++S ++  +R G   +A  +++   +  L P
Sbjct: 442 SMMSRYG---------------IDPRAEHYSSAIDLLARGGQLEDAWKLVQ---KTNLKP 483

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ-HYSCMIDMLGRAGILDKAE- 574
           +      +L  C   G +  G+    + K+++ ID     +Y+ + +M     + + A+ 
Sbjct: 484 NSSMLGAMLGACKLHGNMLLGE---TAAKNLFSIDPGSSVNYAVLANMYAECSLWEDAQR 540

Query: 575 --ELLQQTPGG 583
             E++ +T  G
Sbjct: 541 TREVIDETTDG 551



 Score = 73.6 bits (179), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 41/142 (28%), Positives = 73/142 (51%), Gaps = 2/142 (1%)

Query: 20  CTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY 78
           C S+        + +Y C+     +I   N  +D + K+G  + AK+ FDEMP R+++++
Sbjct: 326 CASVASARFGTQIHAYMCKKQSMGDIALDNALVDMYAKAGEFSDAKRAFDEMPYRNVISW 385

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
             LI+ CG+    + A+ L++ MV  G++ +  TF S+LS C + G   +G++    ++S
Sbjct: 386 TSLITACGRNGSGEDAVTLFNRMVEDGVRPNDVTFLSLLSACGHCGLTNKGMEYFTSMMS 445

Query: 139 -LGFGLNLYIGSPLVDLYMRMG 159
             G        S  +DL  R G
Sbjct: 446 RYGIDPRAEHYSSAIDLLARGG 467


>gi|242080473|ref|XP_002445005.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
 gi|241941355|gb|EES14500.1| hypothetical protein SORBIDRAFT_07g002620 [Sorghum bicolor]
          Length = 679

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 182/650 (28%), Positives = 316/650 (48%), Gaps = 76/650 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++ S    +  +   G+L SA+ +FD+MP R+  ++N L+S   +   P  A  L+ 
Sbjct: 68  PHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAASWNALVSLYLRAGRPAAAHALF- 126

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHC--------------------RVLSL 139
                   ++A ++ ++++  + AG   E   ++                     R   L
Sbjct: 127 ---CKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRWRDPVGSNAMIWGYLRGGEL 183

Query: 140 GFGLNLYIG---------SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           G  L ++ G         S +VD   + G    A  LF+ +PERN+ +W  M+R + +  
Sbjct: 184 GMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAMPERNVVSWTSMIRGYVKHG 243

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + L ++  M+ EGV+ N ++   ++ GC+   L+DEG Q+H  +I++G+ + +IF+ 
Sbjct: 244 MYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGSQVHCLMIRMGFAE-DIFLG 302

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           ++L+  YS  GS+ +A+  F F+   D++SWNS+++ Y   D+I DA  LF   +L  ++
Sbjct: 303 DSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQNDMIEDAHVLF---KLMPEK 359

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
            +I      + FA+R           G+                          +  SV 
Sbjct: 360 DAISWTSMVVGFANR-----------GW--------------------------MRESVE 382

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           +FE  P +      ++M+SL+ +GN   AV  F  M  EG   + V  S  L AL+  A 
Sbjct: 383 LFEQMPVKDEIAWAAVMSSLVANGNYVSAVRWFCQMSQEGCRPNTVAFSCLLSALASLAM 442

Query: 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
            N G     H  A+  G+  + AV  SL+  Y++CG +  +H+VF  I  P+++   S++
Sbjct: 443 LNQG--LQAHAYAVNMGWIFDSAVHASLVTMYAKCGRLAEAHRVFSCISHPSLIATNSMI 500

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
             ++++G+  +A  +   M   G  P+ VTFL +L  C  +G+V+ G   F SM+SVYGI
Sbjct: 501 TAFAQHGLAEDAFKLFNRMQYDGQRPNHVTFLGILTACARAGLVQHGYNYFESMRSVYGI 560

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
             +  HY+CM+D+LGRAG L++A E+    P       W  LL S  +H N  + +  A 
Sbjct: 561 QPNPDHYTCMVDLLGRAGFLNEALEMTNSMPQKDYPDAWKVLLSSSSLHSNLDLAKLAAQ 620

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
            L+E++P D   Y+ +SN +S  G  E    ++   L+   ++  G+SLI
Sbjct: 621 RLLEIDPYDATAYTVLSNMFSSAGMKEDEEMVKVAQLSNMASKSPGYSLI 670



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/349 (24%), Positives = 156/349 (44%), Gaps = 61/349 (17%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD------LIFDALEL---- 300
           NAL+  Y   G + +A++ FD +P  DVISW ++++ YAD         +FD + L    
Sbjct: 45  NALLTSYGRRGRIQDAQQLFDRMPHRDVISWTALLTAYADVGNLASARFVFDDMPLRNAA 104

Query: 301 ----FFRMQLCRKRPSIR-------------SFVEFLNFASRTG------NVYF------ 331
                  + L   RP+               S+   +   +R G       VY+      
Sbjct: 105 SWNALVSLYLRAGRPAAAHALFCKAPAKNAVSYGAIITGLARAGMLREAQAVYWEMPPRW 164

Query: 332 ------GKQIHGYVT--KLG-----FDHGS---VHVQSALTDMYGKCNVIESSVAVFESA 375
                    I GY+   +LG     FD  +   V   SA+ D   K   +  +  +FE+ 
Sbjct: 165 RDPVGSNAMIWGYLRGGELGMALRVFDGMAARDVISWSAMVDGLCKYGTVSEARRLFEAM 224

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           P R++    S++   +  G  +D + +F  M  EG+ ++ +TLS  L   + ++  + GS
Sbjct: 225 PERNVVSWTSMIRGYVKHGMYRDGLLLFLDMRREGVQVNMITLSVVLDGCAQASLVDEGS 284

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
              +HC  I+ GF  +I +  SL+  YSR G +  +  +F  +   ++V + S++ GY +
Sbjct: 285 --QVHCLMIRMGFAEDIFLGDSLIIMYSRFGSMADARSLFSFMNQKDIVSWNSLITGYVQ 342

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           N M  +A  + ++M ++    D +++  ++ G  + G ++E   +F  M
Sbjct: 343 NDMIEDAHVLFKLMPEK----DAISWTSMVVGFANRGWMRESVELFEQM 387


>gi|242077758|ref|XP_002448815.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
 gi|241939998|gb|EES13143.1| hypothetical protein SORBIDRAFT_06g033730 [Sorghum bicolor]
          Length = 913

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 156/566 (27%), Positives = 291/566 (51%), Gaps = 12/566 (2%)

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
           E     + +L   +       G+Q+H  +  LGFG +  +G+ L+D+Y + G    A ++
Sbjct: 215 ERRKMIADLLRASAKGSSLRGGVQLHGALTKLGFGSDTMLGNNLIDMYAKCGELDMAGEV 274

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGML 226
           F  + +RN+ +W  ++  F +       LR+  +M+A     PN  +    ++ C +   
Sbjct: 275 FGGMRDRNVVSWTALMVGFLQHGDATGCLRLLGEMRAASEAAPNEYTLSASLKACCVTED 334

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIV 285
           +  G  +H   ++ G+ + +  VA++LV  YS  G + +A++ FD   +   + +WN+++
Sbjct: 335 MGAGVGIHGLCVRTGYEE-HYVVASSLVLLYSKGGRIGDARRVFDCAGLGRGLATWNAMI 393

Query: 286 SIYADYDLIFDALELFFRMQLC------RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           S YA      DAL +F  M+        + +P   +F   L      G    G Q+H  +
Sbjct: 394 SGYAHAGHGRDALLVFREMRRRRRRHEDQHQPDEFTFASLLKACGGLGAPREGAQVHAAM 453

Query: 340 TKLGFDHGSVHV-QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
              GF   S  +   AL DMY KC  +  ++ VFE    ++     +++      G + +
Sbjct: 454 AASGFSTASNAILAGALVDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVME 513

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+E+F      G   D   LS+ +  L+  A    G  R +HC  +KS   ++++   S+
Sbjct: 514 ALELFRRFWRSGARADAHVLSSIVGVLADFALVEQG--RQVHCYGVKSPAGTDVSAGNSI 571

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y +CG  + + ++F +IP+ NVV +T+++NG  ++G+GREA+ M E M   G+ PD+
Sbjct: 572 VDMYLKCGLPDEAERMFREIPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDE 631

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VT+L +L+ C+H+G+V E +  F+ ++    +    +HY+CM+D+LGRAG L +A +L++
Sbjct: 632 VTYLALLSACSHAGLVDECRRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIR 691

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P      +W +LL +CRVH +  +GR   ++L+ ++  +   Y  +SN ++E G +  
Sbjct: 692 TMPMEPTVGVWQTLLSACRVHKDVAVGREAGDVLLAIDGDNPVNYVTLSNVFAEAGAWRE 751

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
             ++R+    R L +  G S +E+  
Sbjct: 752 CHKVRDAMRRRGLKKQGGCSWVEIGK 777



 Score =  112 bits (280), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 71/285 (24%), Positives = 134/285 (47%), Gaps = 10/285 (3%)

Query: 54  FVKSGHLNSAKKLFD-EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS- 111
           + K G +  A+++FD     R + T+N +ISG     H + AL ++ EM     +     
Sbjct: 364 YSKGGRIGDARRVFDCAGLGRGLATWNAMISGYAHAGHGRDALLVFREMRRRRRRHEDQH 423

Query: 112 -----TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRA 164
                TF+S+L  C   G   EG Q+H  + + GF    N  +   LVD+Y++ G    A
Sbjct: 424 QPDEFTFASLLKACGGLGAPREGAQVHAAMAASGFSTASNAILAGALVDMYVKCGRLPVA 483

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           + +F+ L  +N   W  ++    +  +  E L ++ +    G   +      +V   +  
Sbjct: 484 MQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADAHVLSSIVGVLADF 543

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            L+++G+Q+H + +K      ++   N++VD Y  CG   EA++ F  IP  +V+SW ++
Sbjct: 544 ALVEQGRQVHCYGVK-SPAGTDVSAGNSIVDMYLKCGLPDEAERMFREIPARNVVSWTTM 602

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           ++    + L  +A+ +F  M+     P   +++  L+  S  G V
Sbjct: 603 INGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLV 647



 Score =  106 bits (265), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 58/237 (24%), Positives = 118/237 (49%), Gaps = 1/237 (0%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D +VK G L  A ++F+ +  ++ + +  ++ G  +     +AL L+      G +  A
Sbjct: 471 VDMYVKCGRLPVAMQVFERLERKNAIQWTTVVVGHAQEGQVMEALELFRRFWRSGARADA 530

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
              SS++ V ++     +G Q+HC  +    G ++  G+ +VD+Y++ G    A  +F E
Sbjct: 531 HVLSSIVGVLADFALVEQGRQVHCYGVKSPAGTDVSAGNSIVDMYLKCGLPDEAERMFRE 590

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P RN+ +W  M+    +     E + M+ +M+A GVEP+ +++  ++  CS   L+DE 
Sbjct: 591 IPARNVVSWTTMINGLGKHGLGREAVAMFEEMRAGGVEPDEVTYLALLSACSHAGLVDEC 650

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVS 286
           ++  S + +   V         +VD     G L EA+     +P++  +  W +++S
Sbjct: 651 RRYFSCIRRDRTVRPKAEHYACMVDLLGRAGELREARDLIRTMPMEPTVGVWQTLLS 707


>gi|449522624|ref|XP_004168326.1| PREDICTED: pentatricopeptide repeat-containing protein At2g46050,
           mitochondrial-like [Cucumis sativus]
          Length = 616

 Score =  263 bits (671), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 166/539 (30%), Positives = 288/539 (53%), Gaps = 15/539 (2%)

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS- 190
           +H  V+ LG    L + + L+ +Y++      A  LFDE+  RN+ +WN ++    +   
Sbjct: 38  LHSLVVKLGLINELSVQNKLLRVYVKCRDLDSARTLFDEMARRNVVSWNTVICGLVDGGY 97

Query: 191 ------RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
                 R   +   + KM    V+P+G++F  + R C +   ++ G+QLHS V+K+G+ D
Sbjct: 98  GGEFKMRQHSIFLYFKKMLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGF-D 156

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           ++ FV +A+VDFY+ CG   +A+ +F  I   D++ WN ++       L  +A+E+F  M
Sbjct: 157 LDCFVGSAVVDFYAKCGLYEDARLAFSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLM 216

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           QL   +    +F   L+     G+   GKQ+H  + K  FD   + V S+L ++Y K + 
Sbjct: 217 QLEGFKGDDFTFSSLLSLCKYKGSGELGKQLHCLLIKQSFDL-DILVASSLVNVYAKNDN 275

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           +  +  VF+  P R+     +++         K+AV++F  M+ +    DE+T ++ L +
Sbjct: 276 LYDARKVFDEMPTRNSVSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYCPDELTFASLLSS 335

Query: 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVV 484
              ++ A+      +H C IK GFE+ ++++  L+ AYS+CG I  + Q F  +  P++V
Sbjct: 336 CGFTSGAS--ELMQVHSCLIKLGFEAFLSINNGLIYAYSKCGIIAAALQCFRLVAEPDLV 393

Query: 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
            +TSI+ G +  G+ ++A+ + + M+  G+ PDK+ FL VL+ C+H G V  G   FN M
Sbjct: 394 TWTSIICGLALCGLEKDAVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMGLHYFNLM 453

Query: 545 KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEII 604
            + Y +  D +H +C+ID+LGRAG LD+A +LL+  P         + +R+CR HGN  +
Sbjct: 454 TNQYQLVPDSEHLTCLIDLLGRAGSLDQAFDLLKSMPKEAGPDALRAFIRACRTHGNLRL 513

Query: 605 GRRVANILMEL-EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            +R      E  EPV+   YS VSN Y+  G +    ++R+    R   +  G S +E+
Sbjct: 514 AKRAMEFASEPDEPVN---YSLVSNMYASEGRWSDVARMRKLINDRCEQKTPGLSWVEI 569



 Score =  165 bits (417), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 124/444 (27%), Positives = 219/444 (49%), Gaps = 20/444 (4%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC------GKFRHPKQALYLY-DE 100
           N+ +  +VK   L+SA+ LFDEM  R++V++N +I G       G+F+  + +++LY  +
Sbjct: 55  NKLLRVYVKCRDLDSARTLFDEMARRNVVSWNTVICGLVDGGYGGEFKMRQHSIFLYFKK 114

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+   +     TF+ +   C        G Q+H  V+ +GF L+ ++GS +VD Y + G 
Sbjct: 115 MLMGLVDPDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGL 174

Query: 161 SVRALDLFDELPERNLATWNLMLR--AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
              A   F  +  R+L  WN+ML    F  LSR  E + ++  M+ EG + +  +F  ++
Sbjct: 175 YEDARLAFSCILYRDLVLWNVMLYCCVFNSLSR--EAIEVFRLMQLEGFKGDDFTFSSLL 232

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             C      + GKQLH  +IK  + D++I VA++LV+ Y+   +L +A+K FD +P  + 
Sbjct: 233 SLCKYKGSGELGKQLHCLLIKQSF-DLDILVASSLVNVYAKNDNLYDARKVFDEMPTRNS 291

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW +++  Y  ++   +A++LF RM      P   +F   L+    T       Q+H  
Sbjct: 292 VSWTTMIVGYGQHEYGKEAVKLFRRMLRKDYCPDELTFASLLSSCGFTSGASELMQVHSC 351

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + KLGF+   + + + L   Y KC +I +++  F       L    S++  L   G  KD
Sbjct: 352 LIKLGFE-AFLSINNGLIYAYSKCGIIAAALQCFRLVAEPDLVTWTSIICGLALCGLEKD 410

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS--- 455
           AV++F  M+  GI  D++     L A S     ++G    LH   + +     +  S   
Sbjct: 411 AVKLFDKMLSYGIRPDKIAFLGVLSACSHGGFVSMG----LHYFNLMTNQYQLVPDSEHL 466

Query: 456 CSLMDAYSRCGHIELSHQVFEKIP 479
             L+D   R G ++ +  + + +P
Sbjct: 467 TCLIDLLGRAGSLDQAFDLLKSMP 490



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 98/371 (26%), Positives = 178/371 (47%), Gaps = 4/371 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T   L  +C  +  + S   L S+  +    L+ +  +  +D + K G    A+  
Sbjct: 122 PDGITFNGLFRSCVVLNDVESGRQLHSFVMKIGFDLDCFVGSAVVDFYAKCGLYEDARLA 181

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  +  RD+V +N+++  C      ++A+ ++  M   G K    TFSS+LS+C   G  
Sbjct: 182 FSCILYRDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSLCKYKGSG 241

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G Q+HC ++   F L++ + S LV++Y +      A  +FDE+P RN  +W  M+  +
Sbjct: 242 ELGKQLHCLLIKQSFDLDILVASSLVNVYAKNDNLYDARKVFDEMPTRNSVSWTTMIVGY 301

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +     E ++++ +M  +   P+ L+F  ++  C       E  Q+HS +IKLG+ +  
Sbjct: 302 GQHEYGKEAVKLFRRMLRKDYCPDELTFASLLSSCGFTSGASELMQVHSCLIKLGF-EAF 360

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + + N L+  YS CG +  A + F  +   D+++W SI+   A   L  DA++LF +M  
Sbjct: 361 LSINNGLIYAYSKCGIIAAALQCFRLVAEPDLVTWTSIICGLALCGLEKDAVKLFDKMLS 420

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT-KLGFDHGSVHVQSALTDMYGKCNVI 365
              RP   +F+  L+  S  G V  G      +T +      S H+ + L D+ G+   +
Sbjct: 421 YGIRPDKIAFLGVLSACSHGGFVSMGLHYFNLMTNQYQLVPDSEHL-TCLIDLLGRAGSL 479

Query: 366 ESSVAVFESAP 376
           + +  + +S P
Sbjct: 480 DQAFDLLKSMP 490



 Score = 47.8 bits (112), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 55/265 (20%), Positives = 109/265 (41%), Gaps = 44/265 (16%)

Query: 411 IGLDEVTLSTTLKALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            G   +  S +   L  +A  N +    LLH   +K G  + ++V   L+  Y +C  ++
Sbjct: 9   FGRSRLVHSFSFNVLKAAAPVNSIPRDTLLHSLVVKLGLINELSVQNKLLRVYVKCRDLD 68

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE------ALDMLEVMIQRGLI-PDKVTFL 522
            +  +F+++   NVV + +++ G    G G E      ++ +    +  GL+ PD +TF 
Sbjct: 69  SARTLFDEMARRNVVSWNTVICGLVDGGYGGEFKMRQHSIFLYFKKMLMGLVDPDGITFN 128

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE-------- 574
            +   C     V+ G+ + + +  + G D D    S ++D   + G+ + A         
Sbjct: 129 GLFRSCVVLNDVESGRQLHSFVMKI-GFDLDCFVGSAVVDFYAKCGLYEDARLAFSCILY 187

Query: 575 --------------------------ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
                                      L+Q     GD   +SSLL  C+  G+  +G+++
Sbjct: 188 RDLVLWNVMLYCCVFNSLSREAIEVFRLMQLEGFKGDDFTFSSLLSLCKYKGSGELGKQL 247

Query: 609 ANILMELE-PVDFAVYSQVSNFYSE 632
             +L++    +D  V S + N Y++
Sbjct: 248 HCLLIKQSFDLDILVASSLVNVYAK 272


>gi|359488035|ref|XP_003633690.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g14820-like [Vitis vinifera]
          Length = 731

 Score =  262 bits (670), Expect = 3e-67,   Method: Compositional matrix adjust.
 Identities = 158/568 (27%), Positives = 288/568 (50%), Gaps = 58/568 (10%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH  ++   F   L I  PL D    + PS               A WN ++ ++ + +
Sbjct: 61  QIHAHIIKTHFHHALQI--PLNDFPSGLSPS---------------AQWNFVITSYTKRN 103

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
           +P   L +Y +++    E +      +++ C        GK++H  V+K G +D ++FV 
Sbjct: 104 QPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLGKEIHGFVLKKG-LDRDVFVG 162

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV---SIYADYDLIFDALELFFRMQLC 307
           NAL+  Y  C  +  A+  FD +   DV+SW++++   S   ++D+   ALEL   M   
Sbjct: 163 NALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDM---ALELIREMNFM 219

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-LGFDHGSVHVQSALTDMYGKC---- 362
           + RPS  + V  +N  + T N+  GK +H YV +    +H  V   +AL DMY KC    
Sbjct: 220 QVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTTTALLDMYAKCGHLG 279

Query: 363 ---------------------------NVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
                                      N +E + A+F+S   R +    +++++   +  
Sbjct: 280 LARQLFNGLTQKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANC 339

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
           I  A  +F  M   G+   +VT+ + L   +V+ + +LG  + +H    K   E +  ++
Sbjct: 340 IDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAVAGALDLG--KWVHSYIDKERVEVDCILN 397

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            +L+D Y++CG I  + ++F +  S ++  + +I+ G++ +G G EALD+   M ++G+ 
Sbjct: 398 TALVDMYAKCGDINAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVK 457

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P+ +TF+ +L  C+H+G+V EG+ +F  M   +G+    +HY CM+D+LGRAG+LD+A E
Sbjct: 458 PNDITFIGLLHACSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHE 517

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
           +++  P   + ++W +L+ +CR+H N  +G   A  L+E+EP +      +SN Y+    
Sbjct: 518 MIKSMPIKPNTIVWGALVAACRLHKNPQLGELAATQLLEIEPENCGYNVLMSNIYAAANR 577

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEVN 663
           +  +  +R+T     + ++ GHS+IEVN
Sbjct: 578 WSDAAGVRKTMKTVGMKKEPGHSVIEVN 605



 Score =  139 bits (351), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 120/526 (22%), Positives = 228/526 (43%), Gaps = 41/526 (7%)

Query: 2   LSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQ-LNIYSSNRTIDDFVKSGHL 60
           L+  LLP   TI  L     S +  + + L      P+   L+     + I   +   H 
Sbjct: 14  LTPSLLPL--TIQQLQHHPHSTLKFNPTPLQTPPTSPSQHDLSTLEQTKQIHAHIIKTHF 71

Query: 61  NSAKKL-FDEMPA--RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           + A ++  ++ P+       +N +I+   K   P+ AL +Y ++     +       SVL
Sbjct: 72  HHALQIPLNDFPSGLSPSAQWNFVITSYTKRNQPRNALNVYAQLRKMDFEVDNFMAPSVL 131

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
             C    +   G +IH  VL  G   ++++G+ L+ +Y        A  +FD++ ER++ 
Sbjct: 132 KACGQVSWTQLGKEIHGFVLKKGLDRDVFVGNALMLMYGECACVEYARLVFDKMMERDVV 191

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +W+ M+R+       D  L +  +M    V P+ ++   MV   +    +  GK +H++V
Sbjct: 192 SWSTMIRSLSRNKEFDMALELIREMNFMQVRPSEVAMVSMVNLFADTANMRMGKAMHAYV 251

Query: 238 IKLGWVD-VNIFVANALVDFYSACG-------------------------------SLIE 265
           I+    + + +    AL+D Y+ CG                                L E
Sbjct: 252 IRNSNNEHMGVPTTTALLDMYAKCGHLGLARQLFNGLTQKTVVSWTAMIAGCIRSNRLEE 311

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A+  FD     DV+ W +++S YA  + I  A  LF +M+    RP+  + V  L+  + 
Sbjct: 312 ARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQMRTSGVRPTKVTIVSLLSLCAV 371

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G +  GK +H Y+ K   +   + + +AL DMY KC  I ++  +F  A  R +   N+
Sbjct: 372 AGALDLGKWVHSYIDKERVEVDCI-LNTALVDMYAKCGDINAAGRLFIEAISRDICMWNA 430

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++T     G  ++A+++F  M  +G+  +++T    L A S +     G  +L       
Sbjct: 431 IITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHACSHAGLVTEGK-KLFEKMVHT 489

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
            G    I     ++D   R G ++ +H++ + +P  PN + + +++
Sbjct: 490 FGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTIVWGALV 535



 Score =  107 bits (266), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 66/247 (26%), Positives = 121/247 (48%), Gaps = 1/247 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q  + S    I   ++S  L  A+ LFD    RD++ +  ++S   +     QA  L+D+
Sbjct: 290 QKTVVSWTAMIAGCIRSNRLEEARALFDSTQNRDVMIWTAMLSAYAQANCIDQAFNLFDQ 349

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M + G++ +  T  S+LS+C+ AG    G  +H  +      ++  + + LVD+Y + G 
Sbjct: 350 MRTSGVRPTKVTIVSLLSLCAVAGALDLGKWVHSYIDKERVEVDCILNTALVDMYAKCGD 409

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LF E   R++  WN ++  F      +E L ++ +M+ +GV+PN ++F  ++  
Sbjct: 410 INAAGRLFIEAISRDICMWNAIITGFAMHGYGEEALDIFAEMERQGVKPNDITFIGLLHA 469

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVI 279
           CS   L+ EGK+L   ++    +   I     +VD     G L EA +    +P+  + I
Sbjct: 470 CSHAGLVTEGKKLFEKMVHTFGLVPQIEHYGCMVDLLGRAGLLDEAHEMIKSMPIKPNTI 529

Query: 280 SWNSIVS 286
            W ++V+
Sbjct: 530 VWGALVA 536



 Score = 56.6 bits (135), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 59/273 (21%), Positives = 117/273 (42%), Gaps = 38/273 (13%)

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           KQIH ++ K  F H    +Q  L D              F S    S +  N ++TS   
Sbjct: 60  KQIHAHIIKTHFHHA---LQIPLND--------------FPSGLSPSAQ-WNFVITSYTK 101

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
               ++A+ ++  +      +D     + LKA    +   LG  + +H   +K G + ++
Sbjct: 102 RNQPRNALNVYAQLRKMDFEVDNFMAPSVLKACGQVSWTQLG--KEIHGFVLKKGLDRDV 159

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V  +LM  Y  C  +E +  VF+K+   +VV +++++   SRN     AL+++  M   
Sbjct: 160 FVGNALMLMYGECACVEYARLVFDKMMERDVVSWSTMIRSLSRNKEFDMALELIREMNFM 219

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQ-----LVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
            + P +V  + ++     +  ++ G+     ++ NS     G+       + ++DM  + 
Sbjct: 220 QVRPSEVAMVSMVNLFADTANMRMGKAMHAYVIRNSNNEHMGVPTT----TALLDMYAKC 275

Query: 568 GILDKAEELL----QQTPGGGDCMMWSSLLRSC 596
           G L  A +L     Q+T      + W++++  C
Sbjct: 276 GHLGLARQLFNGLTQKT-----VVSWTAMIAGC 303


>gi|15232344|ref|NP_188709.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|38564272|gb|AAR23715.1| At3g20730 [Arabidopsis thaliana]
 gi|332642896|gb|AEE76417.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 564

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 162/548 (29%), Positives = 281/548 (51%), Gaps = 8/548 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +VS     S S +   L +CS      + + IH   ++ GF  NL +   L+DLY++ G 
Sbjct: 3   VVSENYLLSPSLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGD 62

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD + +R++ +W  M+  F       + L ++ +M  E V+ N  ++  +++ 
Sbjct: 63  VKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKS 122

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C     L EG Q+H  V K G    N+ V +AL+  Y+ CG + EA+  FD +   D++S
Sbjct: 123 CKDLGCLKEGMQIHGSVEK-GNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVS 181

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+++  Y        +  LF  M    K+P   +F   L  +     +    ++HG   
Sbjct: 182 WNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAI 241

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN-IKDA 399
           KLGF   S  ++S L + Y KC  + ++  + E    R L  C +L+T      N   DA
Sbjct: 242 KLGFGRSSALIRS-LVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDA 300

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSL 458
            ++F  M+     +DEV +S+ LK  +  AS  +G  R +H  A+KS     ++A+  SL
Sbjct: 301 FDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIG--RQIHGFALKSSQIRFDVALGNSL 358

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++ G IE +   FE++   +V  +TS++ GY R+G   +A+D+   M    + P+ 
Sbjct: 359 IDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPND 418

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTFL +L+ C+H+G  + G  ++++M + +GI+A  +H SC+IDML R+G L++A  L++
Sbjct: 419 VTFLSLLSACSHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIR 478

Query: 579 QTPG--GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
              G        W + L +CR HGN  + +  A  L+ +EP     Y  +++ Y+  G +
Sbjct: 479 SKEGIVSLSSSTWGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAW 538

Query: 637 EVSMQIRE 644
           + ++  R+
Sbjct: 539 DNALNTRK 546



 Score =  175 bits (443), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 218/459 (47%), Gaps = 6/459 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+   +  ID ++K G +  A+KLFD +  RD+V++  +IS   +  +   AL L+ EM 
Sbjct: 46  NLQLKDMLIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMH 105

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K +  T+ SVL  C + G   EG+QIH  V       NL + S L+ LY R G   
Sbjct: 106 REDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKME 165

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   FD + ER+L +WN M+  +   +  D    ++  M  EG +P+  +F  ++R   
Sbjct: 166 EARLQFDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASI 225

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +   L+   +LH   IKLG+   +  +  +LV+ Y  CGSL  A K  +     D++S  
Sbjct: 226 VVKCLEIVSELHGLAIKLGFGRSSALI-RSLVNAYVKCGSLANAWKLHEGTKKRDLLSCT 284

Query: 283 SIVSIYADY-DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++++ ++   +   DA ++F  M   + +         L   +   +V  G+QIHG+  K
Sbjct: 285 ALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALK 344

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                  V + ++L DMY K   IE +V  FE    + +    SL+      GN + A++
Sbjct: 345 SSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAID 404

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           ++  M  E I  ++VT  + L A S +    LG  ++      K G E+       ++D 
Sbjct: 405 LYNRMEHERIKPNDVTFLSLLSACSHTGQTELG-WKIYDTMINKHGIEAREEHLSCIIDM 463

Query: 462 YSRCGHIELSHQVF---EKIPSPNVVCFTSIMNGYSRNG 497
            +R G++E ++ +    E I S +   + + ++   R+G
Sbjct: 464 LARSGYLEEAYALIRSKEGIVSLSSSTWGAFLDACRRHG 502



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           ++++   CT+I  ++    +  +   + Q+  ++   N  ID + KSG +  A   F+EM
Sbjct: 319 VSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEM 378

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +D+ ++  LI+G G+  + ++A+ LY+ M    IK +  TF S+LS CS+ G    G 
Sbjct: 379 KEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGW 438

Query: 131 QIH 133
           +I+
Sbjct: 439 KIY 441


>gi|75274055|sp|Q9LT48.1|PP244_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g20730
 gi|9294399|dbj|BAB02480.1| unnamed protein product [Arabidopsis thaliana]
 gi|51971823|dbj|BAD44576.1| unknown protein [Arabidopsis thaliana]
          Length = 565

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 162/548 (29%), Positives = 281/548 (51%), Gaps = 8/548 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           +VS     S S +   L +CS      + + IH   ++ GF  NL +   L+DLY++ G 
Sbjct: 4   VVSENYLLSPSLYLKALKLCSYQNVKKQLLLIHGNSITNGFCSNLQLKDMLIDLYLKQGD 63

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  LFD + +R++ +W  M+  F       + L ++ +M  E V+ N  ++  +++ 
Sbjct: 64  VKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMHREDVKANQFTYGSVLKS 123

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C     L EG Q+H  V K G    N+ V +AL+  Y+ CG + EA+  FD +   D++S
Sbjct: 124 CKDLGCLKEGMQIHGSVEK-GNCAGNLIVRSALLSLYARCGKMEEARLQFDSMKERDLVS 182

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           WN+++  Y        +  LF  M    K+P   +F   L  +     +    ++HG   
Sbjct: 183 WNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASIVVKCLEIVSELHGLAI 242

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN-IKDA 399
           KLGF   S  ++S L + Y KC  + ++  + E    R L  C +L+T      N   DA
Sbjct: 243 KLGFGRSSALIRS-LVNAYVKCGSLANAWKLHEGTKKRDLLSCTALITGFSQQNNCTSDA 301

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIAVSCSL 458
            ++F  M+     +DEV +S+ LK  +  AS  +G  R +H  A+KS     ++A+  SL
Sbjct: 302 FDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIG--RQIHGFALKSSQIRFDVALGNSL 359

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++ G IE +   FE++   +V  +TS++ GY R+G   +A+D+   M    + P+ 
Sbjct: 360 IDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPND 419

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTFL +L+ C+H+G  + G  ++++M + +GI+A  +H SC+IDML R+G L++A  L++
Sbjct: 420 VTFLSLLSACSHTGQTELGWKIYDTMINKHGIEAREEHLSCIIDMLARSGYLEEAYALIR 479

Query: 579 QTPG--GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
              G        W + L +CR HGN  + +  A  L+ +EP     Y  +++ Y+  G +
Sbjct: 480 SKEGIVSLSSSTWGAFLDACRRHGNVQLSKVAATQLLSMEPRKPVNYINLASVYAANGAW 539

Query: 637 EVSMQIRE 644
           + ++  R+
Sbjct: 540 DNALNTRK 547



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 125/459 (27%), Positives = 218/459 (47%), Gaps = 6/459 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+   +  ID ++K G +  A+KLFD +  RD+V++  +IS   +  +   AL L+ EM 
Sbjct: 47  NLQLKDMLIDLYLKQGDVKHARKLFDRISKRDVVSWTAMISRFSRCGYHPDALLLFKEMH 106

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +K +  T+ SVL  C + G   EG+QIH  V       NL + S L+ LY R G   
Sbjct: 107 REDVKANQFTYGSVLKSCKDLGCLKEGMQIHGSVEKGNCAGNLIVRSALLSLYARCGKME 166

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   FD + ER+L +WN M+  +   +  D    ++  M  EG +P+  +F  ++R   
Sbjct: 167 EARLQFDSMKERDLVSWNAMIDGYTANACADTSFSLFQLMLTEGKKPDCFTFGSLLRASI 226

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +   L+   +LH   IKLG+   +  +  +LV+ Y  CGSL  A K  +     D++S  
Sbjct: 227 VVKCLEIVSELHGLAIKLGFGRSSALI-RSLVNAYVKCGSLANAWKLHEGTKKRDLLSCT 285

Query: 283 SIVSIYADY-DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++++ ++   +   DA ++F  M   + +         L   +   +V  G+QIHG+  K
Sbjct: 286 ALITGFSQQNNCTSDAFDIFKDMIRMKTKMDEVVVSSMLKICTTIASVTIGRQIHGFALK 345

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                  V + ++L DMY K   IE +V  FE    + +    SL+      GN + A++
Sbjct: 346 SSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEMKEKDVRSWTSLIAGYGRHGNFEKAID 405

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           ++  M  E I  ++VT  + L A S +    LG  ++      K G E+       ++D 
Sbjct: 406 LYNRMEHERIKPNDVTFLSLLSACSHTGQTELG-WKIYDTMINKHGIEAREEHLSCIIDM 464

Query: 462 YSRCGHIELSHQVF---EKIPSPNVVCFTSIMNGYSRNG 497
            +R G++E ++ +    E I S +   + + ++   R+G
Sbjct: 465 LARSGYLEEAYALIRSKEGIVSLSSSTWGAFLDACRRHG 503



 Score = 61.2 bits (147), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 35/123 (28%), Positives = 67/123 (54%), Gaps = 2/123 (1%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           ++++   CT+I  ++    +  +   + Q+  ++   N  ID + KSG +  A   F+EM
Sbjct: 320 VSSMLKICTTIASVTIGRQIHGFALKSSQIRFDVALGNSLIDMYAKSGEIEDAVLAFEEM 379

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             +D+ ++  LI+G G+  + ++A+ LY+ M    IK +  TF S+LS CS+ G    G 
Sbjct: 380 KEKDVRSWTSLIAGYGRHGNFEKAIDLYNRMEHERIKPNDVTFLSLLSACSHTGQTELGW 439

Query: 131 QIH 133
           +I+
Sbjct: 440 KIY 442


>gi|222630191|gb|EEE62323.1| hypothetical protein OsJ_17112 [Oryza sativa Japonica Group]
          Length = 591

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 175/567 (30%), Positives = 282/567 (49%), Gaps = 24/567 (4%)

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP-----------LVDLYMRMG 159
           + FS +L+ C   G    G  +H  V+       L    P           LV +Y R G
Sbjct: 12  ARFSGLLASCGREGDLRLGAALHAAVVKNPAHFRLCASRPWLRHVLVAWNSLVSMYARCG 71

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSR-PDEVLRMYNKM-KAEGVEPNGLSFCYM 217
               A  +FDE+  R+  +WN ++ A    SR   + L ++ +M +++    +  +F  +
Sbjct: 72  RREDAARVFDEMRVRDAVSWNSLIAA----SRGAGDALALFRRMLRSDARACDRATFTTV 127

Query: 218 VRGCSIG--MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           +  C+      L     +H  V+  G+ +  + V NALV  Y  CGS   A++ F  +  
Sbjct: 128 LSECARAGAASLPACAMVHGLVVSCGF-EAEVPVGNALVTAYFECGSPASAERVFHGMAE 186

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +VI+W +++S  A  +L  ++  LF +M       +       L  A R+     G+Q+
Sbjct: 187 KNVITWTAMISGMARAELYKESFSLFGQMIRTVDANNATYSCALLACA-RSLAAREGQQV 245

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG V K GF+   +HV+S L D+Y KC ++E ++ VF S           ++     +G 
Sbjct: 246 HGLVVKAGFED-DLHVESGLMDVYSKCGLMEDALTVFRSCREPDEVFLTVILVGFAQNGL 304

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
            + A E+F  MV  G  +DE T+S  L A   SA   LG  + +H   IK  F  N  V 
Sbjct: 305 EEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFALG--KQIHALVIKRCFGVNTYVC 362

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             L++ YS+CG +  S +VF+++PS N V + SI+  ++R+G G E   + E M   G  
Sbjct: 363 NGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAFARHGHGSEVYQLFESMKADGAK 422

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P  VTFL +L  C+H G  K+G  + NSM S YG+    +HY+C++DMLGRAG+LD A+ 
Sbjct: 423 PTDVTFLSLLHACSHVGSAKKGLEILNSMSSQYGVLPRMEHYACVVDMLGRAGLLDDAKS 482

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635
            ++  P   + ++W +L+ +C  HGN  +G+  A  L+ L+P   A Y  +SN YS  G 
Sbjct: 483 FIEDGPFTDNALLWQALMGACSFHGNSEVGKYAAEKLLLLDPSCTAAYVLLSNIYSSEGR 542

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEV 662
           ++   ++ +      L +D G S IE+
Sbjct: 543 WDDRAKVMKRMSEMGLRKDTGKSWIEL 569



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 122/468 (26%), Positives = 208/468 (44%), Gaps = 13/468 (2%)

Query: 36  CQPNPQLN--IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQ 93
           C   P L   + + N  +  + + G    A ++FDEM  RD V++N LI+     R    
Sbjct: 47  CASRPWLRHVLVAWNSLVSMYARCGRREDAARVFDEMRVRDAVSWNSLIAAS---RGAGD 103

Query: 94  ALYLYDEMVSHGIKE-SASTFSSVLSVCSNAGFYT--EGIQIHCRVLSLGFGLNLYIGSP 150
           AL L+  M+    +    +TF++VLS C+ AG  +      +H  V+S GF   + +G+ 
Sbjct: 104 ALALFRRMLRSDARACDRATFTTVLSECARAGAASLPACAMVHGLVVSCGFEAEVPVGNA 163

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV  Y   G    A  +F  + E+N+ TW  M+          E   ++ +M    V+ N
Sbjct: 164 LVTAYFECGSPASAERVFHGMAEKNVITWTAMISGMARAELYKESFSLFGQM-IRTVDAN 222

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             ++   +  C+  +   EG+Q+H  V+K G+ D ++ V + L+D YS CG + +A   F
Sbjct: 223 NATYSCALLACARSLAAREGQQVHGLVVKAGFED-DLHVESGLMDVYSKCGLMEDALTVF 281

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
                 D +    I+  +A   L   A ELF  M          +    L     +    
Sbjct: 282 RSCREPDEVFLTVILVGFAQNGLEEKAFELFAEMVGAGNEIDENTVSAVLGAFGASAPFA 341

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            GKQIH  V K  F   + +V + L +MY KC  +  SV VF+  P ++    NS++ + 
Sbjct: 342 LGKQIHALVIKRCFGVNT-YVCNGLVNMYSKCGELRESVRVFDEMPSKNSVSWNSIIAAF 400

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
              G+  +  ++F  M  +G    +VT  + L A S   SA  G   +L+  + + G   
Sbjct: 401 ARHGHGSEVYQLFESMKADGAKPTDVTFLSLLHACSHVGSAKKG-LEILNSMSSQYGVLP 459

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG 497
            +     ++D   R G ++ +    E  P + N + + ++M   S +G
Sbjct: 460 RMEHYACVVDMLGRAGLLDDAKSFIEDGPFTDNALLWQALMGACSFHG 507


>gi|6016735|gb|AAF01561.1|AC009325_31 hypothetical protein [Arabidopsis thaliana]
          Length = 641

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 169/596 (28%), Positives = 297/596 (49%), Gaps = 6/596 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R +  +N L+    + +  ++ LY +  M     K    T    L  C        G
Sbjct: 1   MTKRSLYQWNTLLKSLSREKQWEEVLYHFSHMFRDEEKPDNFTLPVALKACGELREVNYG 60

Query: 130 IQIHCRVLS-LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
             IH  V   +  G +LY+GS L+ +Y++ G  + AL +FDEL + ++ TW+ M+  F +
Sbjct: 61  EMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALRMFDELEKPDIVTWSSMVSGFEK 120

Query: 189 LSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
              P + +  + +M  A  V P+ ++   +V  C+       G+ +H  VI+ G+ + ++
Sbjct: 121 NGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVIRRGFSN-DL 179

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            + N+L++ Y+   +  EA   F  I   DVISW+++++ Y       +AL +F  M   
Sbjct: 180 SLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIACYVQNGAAAEALLVFNDMMDD 239

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P++ + +  L   +   ++  G++ H    + G +   V V +AL DMY KC   E 
Sbjct: 240 GTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKGLE-TEVKVSTALVDMYMKCFSPEE 298

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           + AVF   P + +    +L++    +G    ++E F  M+ E     +  L   +   S 
Sbjct: 299 AYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAILMVKVLG-SC 357

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           S    L   +  H   IK GF+SN  +  SL++ YSRCG +  + +VF  I   + V +T
Sbjct: 358 SELGFLEQAKCFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNGIALKDTVVWT 417

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           S++ GY  +G G +AL+    M++   + P++VTFL +L+ C+H+G++ EG  +F  M +
Sbjct: 418 SLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSILSACSHAGLIHEGLRIFKLMVN 477

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            Y +  + +HY+ ++D+LGR G LD A E+ ++ P      +  +LL +CR+H N  +  
Sbjct: 478 DYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMAE 537

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            VA  L ELE      Y  +SN Y   GE+E   ++R +   R + + +  SLIE+
Sbjct: 538 TVAKKLFELESNHAGYYMLMSNVYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEI 593



 Score =  152 bits (385), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 133/568 (23%), Positives = 256/568 (45%), Gaps = 30/568 (5%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKK 65
           P   T+      C  +  ++   ++  + + +  L  ++Y  +  I  ++K G +  A +
Sbjct: 39  PDNFTLPVALKACGELREVNYGEMIHGFVKKDVTLGSDLYVGSSLIYMYIKCGRMIEALR 98

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV-SHGIKESASTFSSVLSVCSNAG 124
           +FDE+   D+VT++ ++SG  K   P QA+  +  MV +  +     T  +++S C+   
Sbjct: 99  MFDELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMVMASDVTPDRVTLITLVSACTKLS 158

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G  +H  V+  GF  +L + + L++ Y +      A++LF  + E+++ +W+ ++ 
Sbjct: 159 NSRLGRCVHGFVIRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMIAEKDVISWSTVIA 218

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            + +     E L ++N M  +G EPN  +   +++ C+    L++G++ H   I+ G ++
Sbjct: 219 CYVQNGAAAEALLVFNDMMDDGTEPNVATVLCVLQACAAAHDLEQGRKTHELAIRKG-LE 277

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
             + V+ ALVD Y  C S  EA   F  IP  DV+SW +++S +    +   ++E F  M
Sbjct: 278 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPRKDVVSWVALISGFTLNGMAHRSIEEFSIM 337

Query: 305 QL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
            L    RP     V+ L   S  G +   K  H YV K GFD     + ++L ++Y +C 
Sbjct: 338 LLENNTRPDAILMVKVLGSCSELGFLEQAKCFHSYVIKYGFDSNPF-IGASLVELYSRCG 396

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTL 422
            + ++  VF     +      SL+T     G    A+E F  MV    +  +EVT  + L
Sbjct: 397 SLGNASKVFNGIALKDTVVWTSLITGYGIHGKGTKALETFNHMVKSSEVKPNEVTFLSIL 456

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SP 481
            A S +   + G  R+            N+     L+D   R G ++ + ++ +++P SP
Sbjct: 457 SACSHAGLIHEG-LRIFKLMVNDYRLAPNLEHYAVLVDLLGRVGDLDTAIEITKRMPFSP 515

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
                 +++ G  R             + Q G + + V         NH+G        +
Sbjct: 516 TPQILGTLL-GACR-------------IHQNGEMAETVAKKLFELESNHAGY-------Y 554

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGI 569
             M +VYG+  + ++   + + + + GI
Sbjct: 555 MLMSNVYGVKGEWENVEKLRNSVKQRGI 582


>gi|357465513|ref|XP_003603041.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355492089|gb|AES73292.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 729

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 163/604 (26%), Positives = 307/604 (50%), Gaps = 16/604 (2%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           I+     ID ++K G  + A+ +FD+M  RD+V++N+LI G  +  +   A+ L+ +M+ 
Sbjct: 91  IHVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLR 150

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
              K + +T  S+L  C       +G  IH   +  GFGL+ ++ + L+ +Y +      
Sbjct: 151 ENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDDLEA 210

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           +  LFDE+ E+++ +WN M+  + +    D+ +  + +M  EG  P+ ++   +V   + 
Sbjct: 211 SQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVSANAF 270

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
                  + +H +V+K G+ + +  V  +LV  Y+  G    AK+ + + P  D+I+  +
Sbjct: 271 P------ENVHCYVVKCGFTN-DASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTA 323

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           I+S Y++   I  A+E F +      +P   + +  L+  +   +   G   HGY  K G
Sbjct: 324 IISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVKSG 383

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
             +  + V + L  +Y + + IE+++++F     + L   NS+++  + +G   DA+E+F
Sbjct: 384 LSNDCL-VANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAMELF 442

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSLMD 460
             M   G   D +T+++ L     S    LG+ R+   LH   +++       +  +L+D
Sbjct: 443 SEMSMCGKKPDAITIASLL-----SGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALID 497

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            YS+CG ++ + +VF  I  P +  + +I++GYS  G+   A      + ++GL PDK+T
Sbjct: 498 MYSKCGRLDYAEKVFYNIKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKIT 557

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
           FL VLA C H G+V  G   FN M   YG+    QHY+C++ +LG+ G+  +A E + + 
Sbjct: 558 FLGVLAACTHGGLVYLGLEYFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINKM 617

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640
               D  +W +LL +C +     +G  +A  L  L   +   Y  +SN Y+ +G ++   
Sbjct: 618 EIQPDSAVWGALLNACCIQREVKLGECLAKKLFLLNHKNGGFYVLMSNLYAIVGRWDDVA 677

Query: 641 QIRE 644
           ++RE
Sbjct: 678 RVRE 681



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 122/518 (23%), Positives = 249/518 (48%), Gaps = 22/518 (4%)

Query: 94  ALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT--------EGIQIHCRVLSLGFGLNL 145
           AL ++ +++   +  +  TFS ++    ++  +T        +  QI  + L  G    +
Sbjct: 32  ALVIFRQILQANVNPNEFTFSLLIKAYLSSPSFTHCPSTAALQARQIQTQCLKRGVNQFI 91

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           ++ + L+DLYM++G +  A ++FD++  R++ +WN+++  + +       ++++  M  E
Sbjct: 92  HVHTSLIDLYMKLGFTSHARNMFDQMSYRDVVSWNVLICGYSQNGYLYHAIQLFVDMLRE 151

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
             +PN  +   ++  C    L+ +G+ +H   IK G+  ++  + NAL+  Y+ C  L  
Sbjct: 152 NFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGF-GLDSHLNNALMSMYAKCDDLEA 210

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           ++  FD +    V+SWN+++ +Y    L FD   L+F+  L  K     S V  +N  S 
Sbjct: 211 SQLLFDEMDEKSVVSWNTMIGVYGQNGL-FDKAILYFKEML--KEGFHPSSVTIMNLVSA 267

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
                F + +H YV K GF + +  V ++L  +Y K     ++  +++  P + L    +
Sbjct: 268 NA---FPENVHCYVVKCGFTNDA-SVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITLTA 323

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++S    G+I+ AVE F   +   I  D V L   L  ++  +   +G     H   +K
Sbjct: 324 IISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCT--FHGYGVK 381

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
           SG  ++  V+  L+  YSR   IE +  +F  +    ++ + S+++G  + G   +A+++
Sbjct: 382 SGLSNDCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAMEL 441

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              M   G  PD +T   +L+GC   G ++ G+   +S      +  +    + +IDM  
Sbjct: 442 FSEMSMCGKKPDAITIASLLSGCCQLGNLRIGE-TLHSYILRNNVRVEDFIGTALIDMYS 500

Query: 566 RAGILDKAEELLQQTPGGGDCM-MWSSLLRSCRVHGNE 602
           + G LD AE++         C+  W++++    ++G E
Sbjct: 501 KCGRLDYAEKVFYNIK--DPCLATWNAIISGYSLYGLE 536



 Score =  124 bits (311), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 102/439 (23%), Positives = 198/439 (45%), Gaps = 17/439 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGH 59
           ML     P   TI +L P+C     +     +  +  +    L+ + +N  +  + K   
Sbjct: 148 MLRENFKPNQTTIVSLLPSCGCFELIFQGRSIHGFGIKAGFGLDSHLNNALMSMYAKCDD 207

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L +++ LFDEM  + +V++N +I   G+     +A+  + EM+  G   S+ T  +++S 
Sbjct: 208 LEASQLLFDEMDEKSVVSWNTMIGVYGQNGLFDKAILYFKEMLKEGFHPSSVTIMNLVS- 266

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
              A  + E   +HC V+  GF  +  + + LV LY + G +  A  L+   P ++L T 
Sbjct: 267 ---ANAFPE--NVHCYVVKCGFTNDASVVTSLVCLYAKQGFTNTAKQLYKYYPTKDLITL 321

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
             ++ ++ E    +  +  + +     ++P+ ++   ++ G +       G   H + +K
Sbjct: 322 TAIISSYSEKGDIESAVECFIQTIQLDIKPDAVALIGVLHGITNPSHFAIGCTFHGYGVK 381

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G  + +  VAN L+  YS    +  A   F  +    +I+WNS++S         DA+E
Sbjct: 382 SGLSN-DCLVANGLISLYSRFDEIEAALSLFYDMREKPLITWNSMISGCVQAGKSSDAME 440

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ----SAL 355
           LF  M +C K+P   +    L+   + GN+  G+ +H Y+ +      +V V+    +AL
Sbjct: 441 LFSEMSMCGKKPDAITIASLLSGCCQLGNLRIGETLHSYILR-----NNVRVEDFIGTAL 495

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMY KC  ++ +  VF +     L   N++++     G    A   +  + ++G+  D+
Sbjct: 496 IDMYSKCGRLDYAEKVFYNIKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDK 555

Query: 416 VTLSTTLKALSVSASANLG 434
           +T    L A +      LG
Sbjct: 556 ITFLGVLAACTHGGLVYLG 574



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 46/184 (25%), Positives = 86/184 (46%), Gaps = 5/184 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   TI +L   C  +  L     L SY  + N ++  +     ID + K G L+ A+K+
Sbjct: 452 PDAITIASLLSGCCQLGNLRIGETLHSYILRNNVRVEDFIGTALIDMYSKCGRLDYAEKV 511

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F  +    + T+N +ISG   +     A   Y ++   G+K    TF  VL+ C++ G  
Sbjct: 512 FYNIKDPCLATWNAIISGYSLYGLEHTAFGCYSKLQEQGLKPDKITFLGVLAACTHGGLV 571

Query: 127 TEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLML 183
             G++ +  +++  +GL  +L   + +V L  + G    A++  +++  + + A W  +L
Sbjct: 572 YLGLE-YFNIMTKEYGLMPSLQHYACIVALLGKEGLFKEAIEFINKMEIQPDSAVWGALL 630

Query: 184 RAFC 187
            A C
Sbjct: 631 NACC 634


>gi|449469206|ref|XP_004152312.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Cucumis sativus]
          Length = 873

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 187/701 (26%), Positives = 342/701 (48%), Gaps = 55/701 (7%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH-LNSAKK 65
           P   TI ++ P C+ +        + S+  +     +    N  I  + KSG     A  
Sbjct: 144 PSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYA 203

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
            F+ +  +D+VT+N +IS   +      AL L+  M+   I+ +  T + +L VC++ G 
Sbjct: 204 AFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGN 263

Query: 126 YTE---GIQIHCRV-LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
                 G +IH  +        ++ + + L++LY+R+G    A  LF  L +R+L +WN 
Sbjct: 264 NVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNT 323

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++  +    +  E +  + K+   G +P+ ++   ++  C+    L  GK +H ++++  
Sbjct: 324 LISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHP 383

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  +  V NALV FY+ C  +  A  SF  I   D+ISWNS+++ +A++        L 
Sbjct: 384 VLSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFPRLL 443

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK---LGFDHGSVHVQSALTDM 358
             M   R +P   + +  +NF          K++H Y  +      D+G   + +AL D 
Sbjct: 444 HLMLRERFKPDHFTILSIINFCITVLGGCKVKEVHCYSVRACLFEADYGPT-ILNALLDA 502

Query: 359 YGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           Y KC +I+ ++ +FES+ G R+L  CNS+++  ++  +  DA+ +F        G+ E  
Sbjct: 503 YSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIFS-------GMSETD 555

Query: 418 LSTTLKALSVSASAN---------------------------------LGSCRLLHCC-- 442
           L+T    + V A  N                                 L S RLL  C  
Sbjct: 556 LTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELASFRLLKECHG 615

Query: 443 -AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
            + +S FE ++ +  +L+DAY++CG ++ ++++FE     ++V FTS+++GY+ +GMG E
Sbjct: 616 YSFRSRFE-DVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGYAIHGMGEE 674

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           AL +   M++ G+ PD V    +L+ C+H+G+V +G  +F+SM+ V  I    +HY+C++
Sbjct: 675 ALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPTMEHYACVV 734

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621
           D+L R G +  A   +   P   D  +W +LL +C+ H    +G  VA  L E +  D  
Sbjct: 735 DLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTHHEVELGLVVAEQLFETKADDIG 794

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            Y  +SN Y+   +++  +++R+    ++L +  G S IEV
Sbjct: 795 NYVVMSNLYAADAKWDGVLEVRKLMKEKELKKPPGCSWIEV 835



 Score =  193 bits (490), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 157/648 (24%), Positives = 308/648 (47%), Gaps = 63/648 (9%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNR-TIDDFVKSGHLN 61
           S+   P       +  +C ++  ++    L  Y     ++   S  +  ++ + + G  +
Sbjct: 36  SSGFKPDNHIFAAIFKSCAALFAINIGKALQGYAVKQGEIACQSVYKGLLNLYARCGAFD 95

Query: 62  SAKKLFDEMPARDMVTYNLLISG-CGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSV 119
              KLF+++  RD+VT+N+++SG C    H  +A+ L+ +M + G +K SA T +S+L V
Sbjct: 96  ECWKLFEQLNHRDVVTWNIILSGYCRSQIHDTKAIRLFVKMHAEGEVKPSAITIASILPV 155

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-PSVRALDLFDELPERNLAT 178
           CS  G    G  IH  V+  G   +  +G+ L+ +Y + G P   A   F+ +  +++ T
Sbjct: 156 CSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVT 215

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIG--MLLDEGKQLHS 235
           WN ++ A  E +   + L++++ M  E +EPN ++   ++  C S G  +    GK++H 
Sbjct: 216 WNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGNNVSCRFGKEIHG 275

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           ++ +   +  +I V NAL++ Y   G + EA+  F  +   D++SWN+++S Y+  D   
Sbjct: 276 YIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGYSLNDKWL 335

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +A++ F ++      P   + +  L   + + N+  GK IHGY+ +         V +AL
Sbjct: 336 EAVDHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHPVLSEDSTVGNAL 395

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
              Y KCN ++S+   F     + L   NS++ +    GN      +   M+ E    D 
Sbjct: 396 VSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFPRLLHLMLRERFKPDH 455

Query: 416 VTLSTTLK-ALSVSASANLGSCRL--LHCCAIKSG-FESNIAVSC--SLMDAYSRCGHIE 469
            T+ + +   ++V     LG C++  +HC ++++  FE++   +   +L+DAYS+CG I+
Sbjct: 456 FTILSIINFCITV-----LGGCKVKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIID 510

Query: 470 LSHQVFE---------------------KIPSPNVVCFTS-----------IMNGYSRNG 497
            + ++FE                     K P+  +  F+            ++  Y+ N 
Sbjct: 511 YALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIFSGMSETDLTTWNLMIRVYAENN 570

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG---MVKE--GQLVFNSMKSVYGIDA 552
             R+AL +   +  +G+ PD V+ + +L  CN      ++KE  G    +  + VY +D 
Sbjct: 571 CPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELASFRLLKECHGYSFRSRFEDVY-LDG 629

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
                  ++D   + G +D A +L + +    D +M++S++    +HG
Sbjct: 630 ------ALLDAYAKCGAVDCAYKLFESS-SQKDLVMFTSMISGYAIHG 670


>gi|357508385|ref|XP_003624481.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|87240699|gb|ABD32557.1| Tetratricopeptide-like helical [Medicago truncatula]
 gi|355499496|gb|AES80699.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 672

 Score =  262 bits (670), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 160/507 (31%), Positives = 266/507 (52%), Gaps = 24/507 (4%)

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + + ++ +WN ++  F       + L  ++ M+   + PN  +F   ++ CS    L  G
Sbjct: 46  VDKTSVYSWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAG 105

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           KQ+H      G+   +IFVA+AL+D YS CG L +A+K FD IP  +V+SW S++S Y  
Sbjct: 106 KQIHQQAFVFGY-GSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQ 164

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG---------------KQI 335
            +   +A+ LF    L  +      + E +       +V  G               + +
Sbjct: 165 NERAREAVFLFKEFLLVDET----DYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECV 220

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG   K GF+ G + V + L D Y KC  I  S  VF+      +   NSL+     +G 
Sbjct: 221 HGLAVKKGFE-GCLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGL 279

Query: 396 IKDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             +A  +F  MV  G +  + VTLS  L A + S +  +G C  +H   +K   E N+ V
Sbjct: 280 SVEAFSLFSDMVKRGEVRYNAVTLSAVLLACAHSGALQIGKC--IHDQVVKMELEDNLVV 337

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             S++D Y +CG +E++ + F+++   NV  +T ++ GY  +G G+EA+ +   MI+ G+
Sbjct: 338 GTSIVDMYCKCGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGI 397

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ +TF+ VLA C+H+G++KEG   FN MK  + ++   +HYSCM+D+LGRAG L +A 
Sbjct: 398 KPNYITFVSVLAACSHAGLLKEGWHWFNKMKCEFDVEPGIEHYSCMVDLLGRAGYLKEAY 457

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
            L+Q+     D ++W SLL +CR+H N  +G   A  L +L+P +   Y  +SN Y++ G
Sbjct: 458 GLIQEMKVKPDFIVWGSLLGACRIHKNVELGEISARKLFKLDPSNCGYYVLLSNIYADAG 517

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIE 661
            ++   ++R       L +  G+S++E
Sbjct: 518 RWDDVERMRILMKNHGLLKTPGYSIVE 544



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 125/530 (23%), Positives = 238/530 (44%), Gaps = 67/530 (12%)

Query: 77  TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRV 136
           ++N +I+   +     QALY +  M    +  + STF   +  CS+      G QIH + 
Sbjct: 53  SWNSIIADFARSGDSLQALYAFSSMRKLSLHPNRSTFPCTIKSCSSLYDLCAGKQIHQQA 112

Query: 137 LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVL 196
              G+G ++++ S L+D+Y + G    A  LFDE+PERN+ +W  M+  + +  R  E +
Sbjct: 113 FVFGYGSDIFVASALIDMYSKCGYLNDARKLFDEIPERNVVSWTSMISGYVQNERAREAV 172

Query: 197 RM-----------YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            +           Y+++   GV  + +    ++  C+   +    + +H   +K G+ + 
Sbjct: 173 FLFKEFLLVDETDYDEIVGVGVGVDSVLLGCVISACARVCVKSVTECVHGLAVKKGF-EG 231

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
            + V N L+D Y+ CG +  ++K FD +   DV SWNS++++YA   L  +A  LF  M 
Sbjct: 232 CLAVGNTLMDAYAKCGEISVSRKVFDGMEETDVCSWNSLIAVYAQNGLSVEAFSLFSDMV 291

Query: 306 LCRKRPSIR----SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
              KR  +R    +    L   + +G +  GK IH  V K+  +   V V +++ DMY K
Sbjct: 292 ---KRGEVRYNAVTLSAVLLACAHSGALQIGKCIHDQVVKMELEDNLV-VGTSIVDMYCK 347

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  +E +   F+    ++++    ++      G+ K+A+++F  M+  GI  + +T  + 
Sbjct: 348 CGRVEMARKAFDRLKRKNVKSWTVMVAGYGMHGHGKEAMKVFYEMIRCGIKPNYITFVSV 407

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L A S             H   +K G+     + C                   E    P
Sbjct: 408 LAACS-------------HAGLLKEGWHWFNKMKC-------------------EFDVEP 435

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
            +  ++ +++   R G  +EA  +++ M  +   PD + +  +L  C     V+ G++  
Sbjct: 436 GIEHYSCMVDLLGRAGYLKEAYGLIQEMKVK---PDFIVWGSLLGACRIHKNVELGEI-- 490

Query: 542 NSMKSVYGID-ADRQHYSCMIDMLGRAGILDKAEEL--------LQQTPG 582
            S + ++ +D ++  +Y  + ++   AG  D  E +        L +TPG
Sbjct: 491 -SARKLFKLDPSNCGYYVLLSNIYADAGRWDDVERMRILMKNHGLLKTPG 539


>gi|357475531|ref|XP_003608051.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
 gi|355509106|gb|AES90248.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
          Length = 763

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 185/664 (27%), Positives = 335/664 (50%), Gaps = 50/664 (7%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           QP P  ++ S+N +I    K+G L  A+ +FDEMP R + ++N +ISG  ++    +AL 
Sbjct: 31  QPYPP-HVISTNISIAHHAKTGKLVEARHMFDEMPLRTVSSWNTMISGYSQWGKYTEALT 89

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           L   M S  +K +  +FS+ LS C+  G    G QIH  +   G+     +GS L+  Y+
Sbjct: 90  LVSFMHSSCVKFNEVSFSACLSACTRGGSLFLGKQIHSLLFKSGYQRFGPVGSALLHYYV 149

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-------------- 202
           +      A  +F+EL + N   W+LML  + +     + + ++ KM              
Sbjct: 150 QCCGIREAEMVFEELRDENHVLWSLMLAGYVQRDMIGDAMEIFEKMPVRDVVAWTTLISG 209

Query: 203 ---KAEGVE----------------PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
              + +G E                PN  +   ++R C+   +L  GK +H   IK G+ 
Sbjct: 210 YAKREDGCERALDLFGCMRRSSEVLPNEFTLDCVLRVCARLRILYVGKVVHGLCIKDGF- 268

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS--WNSIVSIYADYDLIFDALELF 301
           D +  V++AL +FY    ++ +AK+ ++ + V +  S   +S++        + +A  +F
Sbjct: 269 DFDNSVSSALAEFYCVSDAVDDAKRVYESM-VGEACSNVADSLIGGLVSMGRVKEAGMIF 327

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           + +   R +  I + +    +A  +G     K++     K+   H  +   + +  +Y K
Sbjct: 328 YGL---RDKTLISNNLMIKGYA-MSGQFKKSKKL---FEKMSLKH--LTSLNTMITVYSK 378

Query: 362 CNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420
              ++ +V +F+   G R+    NS+M+  +H+G   +A++++  M    +     T S 
Sbjct: 379 NGELDEAVKLFDKTKGERNCVTWNSMMSGYIHNGEHSEALKLYVTMRRFLVEYSRSTFSV 438

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480
             +A +   S   G  +LLH    K+ ++ N+ V  +L+D YS+CGH+  + + F  I S
Sbjct: 439 LFRACAYLCSFQQG--QLLHAHLAKTPYQENVYVGTALVDFYSKCGHLADAQRSFTSIFS 496

Query: 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           PNV  +T+++NGY+ +G G EA+     M+ +G++P+  TF+ VL+ C+H+G+V EG   
Sbjct: 497 PNVAAWTALINGYAYHGCGSEAISRFRSMLDQGVVPNAATFVAVLSACSHAGLVDEGLKF 556

Query: 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           F+SM+  Y I    +HY+C++D+LGR+G + +AEE + Q P   D ++W +LL +     
Sbjct: 557 FHSMQINYRITPTIEHYTCVVDLLGRSGRVKEAEEFIIQMPIKADGVIWGALLNASCFWN 616

Query: 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
           N  +G R A  L  L+P   +    +SN Y+  G +    +IR+   + +L +D G S I
Sbjct: 617 NVELGERAAVKLFSLDPNSVSALVTLSNMYARRGRWGKKTKIRKRLQSLELRKDQGFSWI 676

Query: 661 EVNS 664
           E+N+
Sbjct: 677 ELNN 680


>gi|449480927|ref|XP_004156032.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At3g49710-like [Cucumis sativus]
          Length = 720

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 164/533 (30%), Positives = 286/533 (53%), Gaps = 10/533 (1%)

Query: 135 RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
           RV       N++  + L+  Y +      A  LFDE+P+ +  ++N ++ A+        
Sbjct: 64  RVFDHTHDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQP 123

Query: 195 VLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254
             +++ +M+   ++ +G +   ++  C I + L   +QLH+  +  G +D  + V NAL+
Sbjct: 124 AFQLFLEMREAFLDMDGFTLSGIITACGINVGLI--RQLHALSVVTG-LDSYVSVGNALI 180

Query: 255 DFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
             YS  G L EA++ F ++  D D +SWNS+V  Y  +     ALEL+  M +      I
Sbjct: 181 TSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDI 240

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN-VIESSVAVF 372
            +    L   +   ++  G Q H  + K G+ H + HV S L D+Y KC   +     VF
Sbjct: 241 FTLASVLTAFTNVQDLLGGLQFHAKLIKSGY-HQNSHVGSGLIDLYSKCGGCMLDCRKVF 299

Query: 373 ESAPGRSLECCNSLMTSL-LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           +      L   N++++   L+     +A+E F  +   G   D+ +L   + A S  +S 
Sbjct: 300 DEISNPDLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSP 359

Query: 432 NLGSCRLLHCCAIKSGFESN-IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
           + G  R +H  A+K    SN I+V+ +L+  YS+CG++  +  +F+ +P  N V + S++
Sbjct: 360 SQG--RQVHGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMI 417

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
            GY+++GMG ++L + + M++    P  +TF+ VLA C H+G V++G++ FN MK  +GI
Sbjct: 418 AGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKIYFNMMKQKFGI 477

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
           + +  H+SCMID+LGRAG L +AE L++  P       WS+LL +CR+HGN  +  + AN
Sbjct: 478 EPEAGHFSCMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAAN 537

Query: 611 ILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            L++L+P++ A Y  ++N YS+ G  + +  +R+    R + +  G S IEVN
Sbjct: 538 RLLQLDPLNAAPYVMLANIYSDNGRLQDAASVRKLMRDRGVKKKPGCSWIEVN 590



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 125/476 (26%), Positives = 220/476 (46%), Gaps = 14/476 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++S N  I  + K  ++  A +LFDEMP  D V+YN LI+   +    + A  L+ EM 
Sbjct: 73  NVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLFLEMR 132

Query: 103 SHGIKESASTFSSVLSVCS-NAGFYTEGIQIHCRVLSLGFGLNLY--IGSPLVDLYMRMG 159
              +     T S +++ C  N G      Q+H   LS+  GL+ Y  +G+ L+  Y + G
Sbjct: 133 EAFLDMDGFTLSGIITACGINVGLIR---QLH--ALSVVTGLDSYVSVGNALITSYSKNG 187

Query: 160 PSVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
               A  +F  L E R+  +WN M+ A+ +     + L +Y +M   G+  +  +   ++
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS-LIEAKKSFDFIPVDD 277
              +    L  G Q H+ +IK G+   N  V + L+D YS CG  +++ +K FD I   D
Sbjct: 248 TAFTNVQDLLGGLQFHAKLIKSGY-HQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNPD 306

Query: 278 VISWNSIVSIYADY-DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           ++ WN+++S Y+ Y DL  +ALE F ++Q    RP   S V  ++  S   +   G+Q+H
Sbjct: 307 LVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQVH 366

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G   KL      + V +AL  MY KC  +  +  +F++ P  +    NS++      G  
Sbjct: 367 GLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMG 426

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
             ++ +F  M++       +T  + L A + +     G     +    K G E       
Sbjct: 427 FQSLHLFQRMLEMDFTPTNITFISVLAACAHTGRVEDGKI-YFNMMKQKFGIEPEAGHFS 485

Query: 457 SLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ 511
            ++D   R G +  + ++ E IP  P    +++++     +G    A+     ++Q
Sbjct: 486 CMIDLLGRAGKLSEAERLIETIPFDPGFFXWSALLGACRIHGNVELAIKAANRLLQ 541



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/353 (30%), Positives = 177/353 (50%), Gaps = 21/353 (5%)

Query: 32  LDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRH 90
           LDSY        +   N  I  + K+G L  A+++F  +   RD V++N ++    + R 
Sbjct: 169 LDSY--------VSVGNALITSYSKNGFLKEARRIFHWLSEDRDEVSWNSMVVAYMQHRE 220

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
             +AL LY EM   G+     T +SVL+  +N      G+Q H +++  G+  N ++GS 
Sbjct: 221 GSKALELYLEMTVRGLIVDIFTLASVLTAFTNVQDLLGGLQFHAKLIKSGYHQNSHVGSG 280

Query: 151 LVDLYMRMGPSVRALD---LFDELPERNLATWNLMLRAFC---ELSRPDEVLRMYNKMKA 204
           L+DLY + G  +  LD   +FDE+   +L  WN M+  +    +LS  DE L  + +++ 
Sbjct: 281 LIDLYSKCGGCM--LDCRKVFDEISNPDLVLWNTMISGYSLYEDLS--DEALECFRQLQG 336

Query: 205 EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
            G  P+  S   ++  CS      +G+Q+H   +KL      I V NAL+  YS CG+L 
Sbjct: 337 VGHRPDDCSLVCVISACSNMSSPSQGRQVHGLALKLDIPSNRISVNNALIAMYSKCGNLR 396

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
           +AK  FD +P  + +S+NS+++ YA + + F +L LF RM      P+  +F+  L   +
Sbjct: 397 DAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQRMLEMDFTPTNITFISVLAACA 456

Query: 325 RTGNVYFGKQIHGYVT-KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            TG V  GK     +  K G +  + H  S + D+ G+   +  +  + E+ P
Sbjct: 457 HTGRVEDGKIYFNMMKQKFGIEPEAGHF-SCMIDLLGRAGKLSEAERLIETIP 508



 Score =  105 bits (262), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 111/442 (25%), Positives = 202/442 (45%), Gaps = 42/442 (9%)

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           SF   ++ C     L  GK LH+  IK  +V  + +++N  +  YS C  L  A++ FD 
Sbjct: 10  SFRQFLKTCIAHRDLRTGKSLHALYIK-SFVPTSTYLSNHFLLLYSKCRRLSAARRVFDH 68

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRM-------------QLCRK---RPSIRSF 316
               +V S+N+++S YA    +  A +LF  M                R+   +P+ + F
Sbjct: 69  THDCNVFSFNTLISAYAKESYVEVAHQLFDEMPQPDSVSYNTLIAAYARRGDTQPAFQLF 128

Query: 317 VE----FLNFASRT---------GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +E    FL+    T          NV   +Q+H      G D   V V +AL   Y K  
Sbjct: 129 LEMREAFLDMDGFTLSGIITACGINVGLIRQLHALSVVTGLD-SYVSVGNALITSYSKNG 187

Query: 364 VIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
            ++ +  +F   +  R     NS++ + +       A+E++  M   G+ +D  TL++ L
Sbjct: 188 FLKEARRIFHWLSEDRDEVSWNSMVVAYMQHREGSKALELYLEMTVRGLIVDIFTLASVL 247

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS-HQVFEKIPSP 481
            A + +    LG  +  H   IKSG+  N  V   L+D YS+CG   L   +VF++I +P
Sbjct: 248 TAFT-NVQDLLGGLQ-FHAKLIKSGYHQNSHVGSGLIDLYSKCGGCMLDCRKVFDEISNP 305

Query: 482 NVVCFTSIMNGYS-RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540
           ++V + ++++GYS    +  EAL+    +   G  PD  + +CV++ C++     +G+ V
Sbjct: 306 DLVLWNTMISGYSLYEDLSDEALECFRQLQGVGHRPDDCSLVCVISACSNMSSPSQGRQV 365

Query: 541 FNSMKSVYGIDADRQHY-SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            + +     I ++R    + +I M  + G L  A+ L    P   + + ++S++     H
Sbjct: 366 -HGLALKLDIPSNRISVNNALIAMYSKCGNLRDAKTLFDTMP-EHNTVSYNSMIAGYAQH 423

Query: 600 GNEIIGRRVANILMELEPVDFA 621
           G   +G +  ++   +  +DF 
Sbjct: 424 G---MGFQSLHLFQRMLEMDFT 442



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 46/149 (30%), Positives = 75/149 (50%), Gaps = 4/149 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P   I  +N  I  + K G+L  AK LFD MP  + V+YN +I+G  +     Q+L+L+ 
Sbjct: 375 PSNRISVNNALIAMYSKCGNLRDAKTLFDTMPEHNTVSYNSMIAGYAQHGMGFQSLHLFQ 434

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMR 157
            M+      +  TF SVL+ C++ G   +G +I+  ++   FG+    G  S ++DL  R
Sbjct: 435 RMLEMDFTPTNITFISVLAACAHTGRVEDG-KIYFNMMKQKFGIEPEAGHFSCMIDLLGR 493

Query: 158 MGPSVRALDLFDELP-ERNLATWNLMLRA 185
            G    A  L + +P +     W+ +L A
Sbjct: 494 AGKLSEAERLIETIPFDPGFFXWSALLGA 522


>gi|116308873|emb|CAH66009.1| H0613H07.7 [Oryza sativa Indica Group]
 gi|116317921|emb|CAH65944.1| H0716A07.2 [Oryza sativa Indica Group]
          Length = 854

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 198/679 (29%), Positives = 349/679 (51%), Gaps = 27/679 (3%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           + L P +++   L    ++    +++L      +P+P +    +N  +  + + G L +A
Sbjct: 58  SALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAV----ANALLTAYARCGRLAAA 113

Query: 64  KKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            ++F  +   A D V++N LIS    FR    AL     M++ G   ++ T  SVL   S
Sbjct: 114 LEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVS 173

Query: 122 N----AGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVRALDLF-DELPER 174
           +    A     G + H   L  G   G   +  + L+ +Y R+G    A  LF    P R
Sbjct: 174 HLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGR 233

Query: 175 -NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ TWN M+    +    DE ++    M A GV P+G++F   +  CS   LLD G+++
Sbjct: 234 GDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREM 293

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDVISWNSIVSIYADY 291
           H++VIK   +  N FVA+ALVD Y+    + +A++ FD +P     +  WN+++  YA  
Sbjct: 294 HAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQA 353

Query: 292 DLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQ-IHGYVTKLGFDHGSV 349
            +  +AL LF RM+      P   +    L   +R+   + GK+ +HGYV K G   G+ 
Sbjct: 354 GMDEEALRLFARMEAEAGFVPCETTMASVLPACARS-EAFAGKEAVHGYVVKRGMA-GNR 411

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-- 407
            VQ+AL DMY +    + +  +F       +   N+L+T  +  G++ DA ++   M   
Sbjct: 412 FVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQL 471

Query: 408 -DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            + G+  + +TL T L   ++ A+   G  + +H  A++   ++++AV  +L+D Y++CG
Sbjct: 472 EEGGVVPNAITLMTLLPGCAILAAPARG--KEIHGYAVRHALDTDVAVGSALVDMYAKCG 529

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVL 525
            + LS  VF+++P  N + +  ++  Y  +G+G EA  + + M   G   P++VTF+  L
Sbjct: 530 CLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAAL 589

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           A C+HSGMV  G  +F++M+  +G++      +C++D+LGRAG LD+A  ++     G  
Sbjct: 590 AACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMEAGEQ 649

Query: 586 CM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
            +  WS++L +CR+H N  +G      L+ELEP + + Y  + N YS  G++  + ++R 
Sbjct: 650 QVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRS 709

Query: 645 TALARKLTRDIGHSLIEVN 663
               R + ++ G S IEV+
Sbjct: 710 RMRRRGVAKEPGCSWIEVD 728


>gi|302782902|ref|XP_002973224.1| hypothetical protein SELMODRAFT_98955 [Selaginella moellendorffii]
 gi|300158977|gb|EFJ25598.1| hypothetical protein SELMODRAFT_98955 [Selaginella moellendorffii]
          Length = 546

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 154/540 (28%), Positives = 282/540 (52%), Gaps = 10/540 (1%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           GI+ ++ TF  +L  CSN G    G +IH R++ LG+  +  + + ++ +Y +      A
Sbjct: 5   GIRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGWDTDTVVSTAILGMYSKCEKLGDA 64

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD L  +++ +W  ++ AF +L RP   L ++ +M  +GV+PN  +F  ++  C+  
Sbjct: 65  KKVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILAACTYM 124

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L++G +L+   I  G+   ++FV +  V  YS  G+L+EAK +FD +      SWN+I
Sbjct: 125 DALEDGDKLYKRAISCGY-GADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAI 183

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           V  Y  +  I  A+ L+  M +    P   + V  L   S  G +  G++IH    ++G 
Sbjct: 184 VRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERIH---ARMG- 239

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D       SA+  MY KC  IE ++  F      ++   N+L+   +   + ++A++++ 
Sbjct: 240 DKPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLYH 299

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M  EG+  D  T S+ L A   S + +L   R +H   +  G E  + +   L++ +++
Sbjct: 300 AMNLEGLEADIYTFSSVLGA--CSGAKDLSEGRAVHARIVSGGLEVVVPLQNGLVNMFAK 357

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG + L+ ++F  + S N V + S++  + ++G G  A ++ + M+  G  P + TF  +
Sbjct: 358 CGSLTLALEMFRGMASRNTVSWNSMVTAFCQHGEGGGAFELFKEMLLEGAEPHEQTFTSI 417

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT-PGG 583
           L  C+HSG++++G   F  M   +GI    +HY C+ID+LGR G +  AE++++   P  
Sbjct: 418 LNFCSHSGLLQDGFGYFFDMVDEFGIAPVDEHYRCVIDLLGRTGHIAAAEKMVEHAFP-- 475

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
           G  + W+SLL +CR + N  I  R    LM + P + A   Q++N  +E G ++   +++
Sbjct: 476 GSVIAWTSLLAACRTYRNVEIAARATEELMRVRPENPAPLVQLANLCAEAGRWDAVERVK 535



 Score =  179 bits (453), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 116/450 (25%), Positives = 218/450 (48%), Gaps = 32/450 (7%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K   L  AKK+FD +  +D+V++  +I+   +   P+ AL L+ EM   G+K + STF
Sbjct: 55  YSKCEKLGDAKKVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTF 114

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
            ++L+ C+      +G +++ R +S G+G ++++GS  V +Y R G  V A   FD L E
Sbjct: 115 VNILAACTYMDALEDGDKLYKRAISCGYGADVFVGSTAVTMYSRFGNLVEAKAAFDHLRE 174

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           ++  +WN ++RA+ +     + + +Y +M   G EP+  +   ++  CS    L+EG+++
Sbjct: 175 KSTGSWNAIVRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACSSLGALEEGERI 234

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H+ +        +    +A+V  Y+ CG +  A  +F  +   +V+ WN++++ Y   + 
Sbjct: 235 HARMGD----KPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEH 290

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             +AL+L+  M L      I +F   L   S   ++  G+ +H  +   G +   V +Q+
Sbjct: 291 WQEALDLYHAMNLEGLEADIYTFSSVLGACSGAKDLSEGRAVHARIVSGGLEV-VVPLQN 349

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
            L +M+ KC  +  ++ +F     R+    NS++T+    G    A E+F  M+ EG   
Sbjct: 350 GLVNMFAKCGSLTLALEMFRGMASRNTVSWNSMVTAFCQHGEGGGAFELFKEMLLEGAEP 409

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF--------ESNIA-----VSCSLMD 460
            E T ++ L   S             H   ++ GF        E  IA       C ++D
Sbjct: 410 HEQTFTSILNFCS-------------HSGLLQDGFGYFFDMVDEFGIAPVDEHYRC-VID 455

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
              R GHI  + ++ E     +V+ +TS++
Sbjct: 456 LLGRTGHIAAAEKMVEHAFPGSVIAWTSLL 485



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 105/400 (26%), Positives = 194/400 (48%), Gaps = 9/400 (2%)

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M  EG+ PN ++F +++  CS    ++ G+++H+ ++ LGW D +  V+ A++  YS C 
Sbjct: 1   MDLEGIRPNSVTFLWILGACSNLGDVETGRKIHARMVFLGW-DTDTVVSTAILGMYSKCE 59

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
            L +AKK FD +   DV+SW +I++ ++       ALELF+ M L   +P+  +FV  L 
Sbjct: 60  KLGDAKKVFDSLRRKDVVSWTAIITAFSQLGRPRVALELFWEMDLDGVKPNESTFVNILA 119

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
             +    +  G +++      G+    V V S    MY +   +  + A F+    +S  
Sbjct: 120 ACTYMDALEDGDKLYKRAISCGYG-ADVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTG 178

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
             N+++ + +  G+I  A+ ++  M   G   D  T    L A S     +LG+      
Sbjct: 179 SWNAIVRAYIQHGHISQAISLYKEMDVHGAEPDTFTHVCLLGACS-----SLGALEEGER 233

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
              + G + +     +++  Y++CG IE +   F K+ S NVV + +++ GY +    +E
Sbjct: 234 IHARMGDKPDGLAGSAIVAMYAKCGGIEHAMTAFTKMSSSNVVVWNALIAGYVQGEHWQE 293

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           ALD+   M   GL  D  TF  VL  C+ +  + EG+ V   + S  G++      + ++
Sbjct: 294 ALDLYHAMNLEGLEADIYTFSSVLGACSGAKDLSEGRAVHARIVS-GGLEVVVPLQNGLV 352

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +M  + G L  A E+ +      + + W+S++ +   HG 
Sbjct: 353 NMFAKCGSLTLALEMFRGMA-SRNTVSWNSMVTAFCQHGE 391



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 97/362 (26%), Positives = 173/362 (47%), Gaps = 12/362 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  +  + + G+L  AK  FD +  +   ++N ++    +  H  QA+ LY EM 
Sbjct: 145 DVFVGSTAVTMYSRFGNLVEAKAAFDHLREKSTGSWNAIVRAYIQHGHISQAISLYKEMD 204

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            HG +    T   +L  CS+ G   EG +IH R+     GL    GS +V +Y + G   
Sbjct: 205 VHGAEPDTFTHVCLLGACSSLGALEEGERIHARMGDKPDGL---AGSAIVAMYAKCGGIE 261

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A+  F ++   N+  WN ++  + +     E L +Y+ M  EG+E +  +F  ++  CS
Sbjct: 262 HAMTAFTKMSSSNVVVWNALIAGYVQGEHWQEALDLYHAMNLEGLEADIYTFSSVLGACS 321

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L EG+ +H+ ++  G ++V + + N LV+ ++ CGSL  A + F  +   + +SWN
Sbjct: 322 GAKDLSEGRAVHARIVSGG-LEVVVPLQNGLVNMFAKCGSLTLALEMFRGMASRNTVSWN 380

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY---- 338
           S+V+ +  +     A ELF  M L    P  ++F   LNF S +G +  G    GY    
Sbjct: 381 SMVTAFCQHGEGGGAFELFKEMLLEGAEPHEQTFTSILNFCSHSGLLQDG---FGYFFDM 437

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V + G      H +  + D+ G+   I ++  + E A   S+    SL+ +     N++ 
Sbjct: 438 VDEFGIAPVDEHYRCVI-DLLGRTGHIAAAEKMVEHAFPGSVIAWTSLLAACRTYRNVEI 496

Query: 399 AV 400
           A 
Sbjct: 497 AA 498


>gi|302771271|ref|XP_002969054.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
 gi|300163559|gb|EFJ30170.1| hypothetical protein SELMODRAFT_90563 [Selaginella moellendorffii]
          Length = 696

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 157/565 (27%), Positives = 298/565 (52%), Gaps = 9/565 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   GI       +S+++ C+      EG ++H  ++  GF  ++ + + L+ +Y + G 
Sbjct: 1   MEERGIVADKFIVTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGS 60

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F+ +  ++L  W+ ++ A+    R +  + +Y +M AEGVEPN ++F   + G
Sbjct: 61  LDDAKRVFEGMEIKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGG 120

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    L +G+ +H  ++    V  +  + ++L++ Y  C  ++EA+K F+ +   +V S
Sbjct: 121 CASVAGLADGRAIHQRILA-SKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRS 179

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           + +++S Y       +ALELF RM       P+  +F   L      GN+  G+++H ++
Sbjct: 180 YTAMISAYVQAGEHAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHL 239

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
              GFD   V VQ+AL  MYGKC     +  VF+S   R++    S++ +    GN ++A
Sbjct: 240 ASRGFDTNVV-VQNALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEA 298

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + +F  M  E  G   V+ S+ L A ++  + + G  R +H   +++   S   +  SL+
Sbjct: 299 LNLFKRMDVEPSG---VSFSSALNACALLGALDEG--REIHHRVVEAHLASP-QMETSLL 352

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
             Y+RCG ++ + +VF ++ + +     +++  ++++G  ++AL +   M Q G+  D +
Sbjct: 353 SMYARCGSLDDARRVFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGI 412

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           TF+ VL  C+H+ +V + +  F S+   +G+    +HY CM+D+LGR+G L  AEEL++ 
Sbjct: 413 TFVSVLVACSHTSLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVET 472

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639
            P   D + W +LL  C+ HG+   G R A  + EL P +   Y  +SN Y+    F+ +
Sbjct: 473 MPYQTDAVAWMTLLSGCKRHGDLNRGERAARKVFELAPAETLPYVFLSNMYAAAKRFDDA 532

Query: 640 MQIRETALARKLTRDIGHSLIEVNS 664
            ++R+    R +T  +  S IE+++
Sbjct: 533 RRVRKEMEERGVTTPVAVSYIEIDN 557



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 127/489 (25%), Positives = 243/489 (49%), Gaps = 12/489 (2%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           +T+L   CT +  L     L  +      + +I      +  + K G L+ AK++F+ M 
Sbjct: 13  VTSLVAACTKLQALEEGRRLHEHLIITGFRTDIPLETALLQMYAKCGSLDDAKRVFEGME 72

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            +D+  ++ +IS   +    + A+ LY  M++ G++ +  TF+  L  C++     +G  
Sbjct: 73  IKDLFAWSSIISAYARAGRGEMAVVLYRRMIAEGVEPNVVTFACALGGCASVAGLADGRA 132

Query: 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191
           IH R+L+     +  +   L+++Y++    V A  +F+ +  RN+ ++  M+ A+ +   
Sbjct: 133 IHQRILASKVPQDDVLQDSLLNMYLKCDEMVEARKVFEGMKARNVRSYTAMISAYVQAGE 192

Query: 192 PDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
             E L ++++M K E +EPN  +F  ++        L++G+++H H+   G+ D N+ V 
Sbjct: 193 HAEALELFSRMSKVEAIEPNAYTFATILGAVEGLGNLEKGRKVHRHLASRGF-DTNVVVQ 251

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NALV  Y  CGS +EA+K FD +   +VISW S+++ YA +    +AL LF RM +    
Sbjct: 252 NALVTMYGKCGSPVEARKVFDSMTARNVISWTSMIAAYAQHGNPQEALNLFKRMDV---E 308

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           PS  SF   LN  +  G +  G++IH  V +      S  ++++L  MY +C  ++ +  
Sbjct: 309 PSGVSFSSALNACALLGALDEGREIHHRVVEAHL--ASPQMETSLLSMYARCGSLDDARR 366

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430
           VF     R    CN+++ +    G  K A+ ++  M  EGI  D +T  + L  ++ S +
Sbjct: 367 VFNRMKTRDAFSCNAMIAAFTQHGRKKQALRIYRRMEQEGIPADGITFVSVL--VACSHT 424

Query: 431 ANLGSCR-LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTS 488
           + +  CR       +  G    +     ++D   R G +  + ++ E +P   + V + +
Sbjct: 425 SLVADCRDFFQSLVMDHGVVPLVEHYLCMVDVLGRSGRLGDAEELVETMPYQTDAVAWMT 484

Query: 489 IMNGYSRNG 497
           +++G  R+G
Sbjct: 485 LLSGCKRHG 493


>gi|225459473|ref|XP_002284396.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Vitis vinifera]
          Length = 690

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 188/659 (28%), Positives = 316/659 (47%), Gaps = 42/659 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ +N  +  +V    L  A++LFDE   R++ T+  +IS       P  AL  Y +M+
Sbjct: 37  DVFFANNLLAMYVDISLLKDARRLFDETLERNVATWTTMISAYSSSGRPDTALKFYVQML 96

Query: 103 -SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            S     +   +S+VL  C   G    G  IH RV     G +  + + L+D+Y++ G  
Sbjct: 97  ESKSETPNGFLYSAVLKACGLVGDLESGKLIHGRVFRANLGFDTVLMNTLLDMYVKCGSL 156

Query: 162 VRALDLFDELPERNLATWNLMLRA-------------FCELSRPDEV------------- 195
             A  +FD++   +  +WN M+               F ++  PD V             
Sbjct: 157 SSARKVFDDILCPSSTSWNTMISGYGKEGLMEEAVNLFYQMPEPDTVSWNSIIAGFGCKE 216

Query: 196 ----LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVAN 251
               LR    M  +G++ +G +F   ++ C    LL   KQ+H +V K G+     F A+
Sbjct: 217 SLGALRFVCMMHRKGLKLDGFTFSCALKTCGCFQLLVMVKQIHCYVNKSGFGSC-CFTAS 275

Query: 252 ALVDFYSACGSLIEAKKSFDFIP------VDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           ALVD YS C  L EA K FD         +D +  WNS++S Y   +    A+ L  ++ 
Sbjct: 276 ALVDSYSNCNELDEAIKMFDEYSCCSASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIH 335

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
                    +F   L       N   G Q+ G     G++   V V S L D+Y     I
Sbjct: 336 SLGAHVDSFTFGSALKVCINLQNFRLGLQVQGLAVTSGYELDYV-VGSILIDLYANDGKI 394

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           + ++ +F   P + +   +SL++     G       +F  MV+  I +D+  +S+ LKA 
Sbjct: 395 KDALRLFYRLPEKDIVVWSSLISWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKA- 453

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
             S+   LGS + +H   +KSG+ES      SL+D Y++CG IE    +F      + VC
Sbjct: 454 -CSSLVGLGSGKQVHSFCVKSGYESERITVTSLIDLYAKCGEIEDGLALFYCTSERDTVC 512

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           +T I+ G  +NG   EA+   + MI+ GL P+++TFL VL+ C H+G+V+E   +F  MK
Sbjct: 513 YTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVEEAWTIFKYMK 572

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           + Y ++   +HY C++++L +AG   +AEEL+ + P   D  +W+SLL +C  H    + 
Sbjct: 573 TEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAEMPFEPDQTIWNSLLGACGTHKKTELV 632

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
             +A  L+   P D ++   +SN Y+ +  ++ S ++RE  + +   ++ G S I++ S
Sbjct: 633 NFIAERLLTTLPEDPSILVTLSNVYATLEMWDDSRKMREV-IKKVGMKEAGKSWIQIKS 690



 Score =  157 bits (396), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 135/549 (24%), Positives = 246/549 (44%), Gaps = 59/549 (10%)

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           SV+  C     +  G  +H  ++ LG   +++  + L+ +Y+ +     A  LFDE  ER
Sbjct: 8   SVIRQCGRFRAFRHGRSLHAHIIKLGVFNDVFFANNLLAMYVDISLLKDARRLFDETLER 67

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
           N+ATW  M+ A+    RPD  L+ Y +M +++   PNG  +  +++ C +   L+ GK +
Sbjct: 68  NVATWTTMISAYSSSGRPDTALKFYVQMLESKSETPNGFLYSAVLKACGLVGDLESGKLI 127

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  V +   +  +  + N L+D Y  CGSL  A+K FD I      SWN+++S Y    L
Sbjct: 128 HGRVFRAN-LGFDTVLMNTLLDMYVKCGSLSSARKVFDDILCPSSTSWNTMISGYGKEGL 186

Query: 294 IFDALELFFRMQLCRKRPSIRSF---------------VEFLNFASRTGNVYFG------ 332
           + +A+ LF++M      P   S+               + F+    R G    G      
Sbjct: 187 MEEAVNLFYQM----PEPDTVSWNSIIAGFGCKESLGALRFVCMMHRKGLKLDGFTFSCA 242

Query: 333 -------------KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES---AP 376
                        KQIH YV K GF        SAL D Y  CN ++ ++ +F+      
Sbjct: 243 LKTCGCFQLLVMVKQIHCYVNKSGFG-SCCFTASALVDSYSNCNELDEAIKMFDEYSCCS 301

Query: 377 GRSLEC---CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
              L+C    NS+++  + +     A+ +   +   G  +D  T  + LK        NL
Sbjct: 302 ASILDCLPLWNSMLSGYVVNEQNSAAINLVSQIHSLGAHVDSFTFGSALK-----VCINL 356

Query: 434 GSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIM 490
            + RL   +   A+ SG+E +  V   L+D Y+  G I+ + ++F ++P  ++V ++S++
Sbjct: 357 QNFRLGLQVQGLAVTSGYELDYVVGSILIDLYANDGKIKDALRLFYRLPEKDIVVWSSLI 416

Query: 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550
           +  ++ G+      +   M+   +  D+     VL  C+    +  G+ V +S     G 
Sbjct: 417 SWCTKMGLNSLVFSLFRDMVNLDIEVDQFIISSVLKACSSLVGLGSGKQV-HSFCVKSGY 475

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN--EIIGRRV 608
           +++R   + +ID+  + G ++    L   T    D + ++ ++  C  +G   E +G   
Sbjct: 476 ESERITVTSLIDLYAKCGEIEDGLALFYCTS-ERDTVCYTGIIMGCGQNGRAMEAVGFFQ 534

Query: 609 ANILMELEP 617
             I + L+P
Sbjct: 535 EMIELGLKP 543



 Score = 67.8 bits (164), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 55/192 (28%), Positives = 89/192 (46%), Gaps = 14/192 (7%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRT-----IDDFVKSGHLNSAKKLF 67
           I+++   C+S+V L S   + S+C  +     Y S R      ID + K G +     LF
Sbjct: 447 ISSVLKACSSLVGLGSGKQVHSFCVKSG----YESERITVTSLIDLYAKCGEIEDGLALF 502

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
                RD V Y  +I GCG+     +A+  + EM+  G+K +  TF  VLS C +AG   
Sbjct: 503 YCTSERDTVCYTGIIMGCGQNGRAMEAVGFFQEMIELGLKPNEITFLGVLSACRHAGLVE 562

Query: 128 EGIQIHCRVLSLGFGLNLYIGSP--LVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLR 184
           E   I  + +   + +  +I     +V+L  + G    A +L  E+P E +   WN +L 
Sbjct: 563 EAWTIF-KYMKTEYKMEPHIEHYYCIVELLSQAGCFKEAEELIAEMPFEPDQTIWNSLLG 621

Query: 185 AFCELSRPDEVL 196
           A C   +  E++
Sbjct: 622 A-CGTHKKTELV 632


>gi|115444451|ref|NP_001046005.1| Os02g0167200 [Oryza sativa Japonica Group]
 gi|113535536|dbj|BAF07919.1| Os02g0167200, partial [Oryza sativa Japonica Group]
          Length = 526

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 152/523 (29%), Positives = 272/523 (52%), Gaps = 41/523 (7%)

Query: 140 GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY 199
           GFG + ++G+ L+D+Y +      A+ +F+ LP   + +WN+++  F +     + + + 
Sbjct: 3   GFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVL 62

Query: 200 NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA 259
           + M+  G EPN +++  ++  C       + + +HS                        
Sbjct: 63  SLMQEAGFEPNEVTYSNLLASCI------KARDVHS------------------------ 92

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319
                 A+  FD I    V +WN+++S Y   +   D +ELF RMQ    +P   +    
Sbjct: 93  ------ARAMFDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVI 146

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           L+  S+ G + FG+Q+H    +    H  + V S L DMY KC  I  + ++F     R 
Sbjct: 147 LSSCSKLGILDFGRQVHSASVRFLL-HNDMFVASGLVDMYSKCGQIGIARSIFNKMTERD 205

Query: 380 LECCNSLMTSL-LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL 438
           + C NS+++ L +HS N K+A + F  M + GI   E + ++ + + S  +S   G  R 
Sbjct: 206 VVCWNSIISGLTIHSLN-KEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHG--RQ 262

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +H   +K G++ N+ V  +L+D Y++CG+++ +   F+ +   N+V +  +++GY++NG+
Sbjct: 263 IHAQVMKDGYDQNVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGL 322

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
           G +A+++ E M+     PD VTF+ VL GC+HSG+V +    FNSM++ YGI    +HY+
Sbjct: 323 GDKAVELFEYMLTTEQKPDAVTFIAVLTGCSHSGLVDKAMAFFNSMENSYGIIPLAEHYT 382

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618
           C+ID LGRAG   + E L+ + P   D ++W  LL +C VH N  +G+  A  L  ++P 
Sbjct: 383 CLIDALGRAGRFVEVEALIHKMPCKDDPIIWEVLLAACVVHHNAELGKCAAEHLFRIDPK 442

Query: 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           + + Y  +SN Y+ +G    +  +R     R + +  G+S I+
Sbjct: 443 NPSPYVLLSNIYASLGRHGDASAVRALMSNRGVVKGRGYSWID 485



 Score =  160 bits (405), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 104/382 (27%), Positives = 190/382 (49%), Gaps = 37/382 (9%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  ID + K   ++ A K+F+ +P+  +V++N+LI+G G+     +A+ +   M   G +
Sbjct: 12  NSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVEVLSLMQEAGFE 71

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
            +  T+S++L+ C  A                                 R   S RA+  
Sbjct: 72  PNEVTYSNLLASCIKA---------------------------------RDVHSARAM-- 96

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD++   ++ TWN +L  +C+  +  + + ++ +M+ + V+P+  +   ++  CS   +L
Sbjct: 97  FDKISRPSVTTWNTLLSGYCQEEQHQDTIELFRRMQHQNVQPDRTTLAVILSSCSKLGIL 156

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
           D G+Q+HS  ++   +  ++FVA+ LVD YS CG +  A+  F+ +   DV+ WNSI+S 
Sbjct: 157 DFGRQVHSASVRF-LLHNDMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISG 215

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
              + L  +A + F +M+     P+  S+   +N  SR  ++  G+QIH  V K G+D  
Sbjct: 216 LTIHSLNKEAFDFFKQMRENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQ- 274

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           +V+V SAL DMY KC  ++ +   F++   +++   N ++     +G    AVE+F +M+
Sbjct: 275 NVYVGSALIDMYAKCGNMDDARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYML 334

Query: 408 DEGIGLDEVTLSTTLKALSVSA 429
                 D VT    L   S S 
Sbjct: 335 TTEQKPDAVTFIAVLTGCSHSG 356



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 136/274 (49%), Gaps = 6/274 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++ ++  +D + K G +  A+ +F++M  RD+V +N +ISG       K+A   + +M 
Sbjct: 174 DMFVASGLVDMYSKCGQIGIARSIFNKMTERDVVCWNSIISGLTIHSLNKEAFDFFKQMR 233

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            +GI  + S+++S+++ CS       G QIH +V+  G+  N+Y+GS L+D+Y + G   
Sbjct: 234 ENGIMPTESSYASMINSCSRLSSIPHGRQIHAQVMKDGYDQNVYVGSALIDMYAKCGNMD 293

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A   FD +  +N+  WN M+  + +    D+ + ++  M     +P+ ++F  ++ GCS
Sbjct: 294 DARLFFDTMMMKNIVAWNEMIHGYAQNGLGDKAVELFEYMLTTEQKPDAVTFIAVLTGCS 353

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISW 281
              L+D+     + +     +         L+D     G  +E +     +P  DD I W
Sbjct: 354 HSGLVDKAMAFFNSMENSYGIIPLAEHYTCLIDALGRAGRFVEVEALIHKMPCKDDPIIW 413

Query: 282 NSIVS---IYADYDLIFDALELFFRMQLCRKRPS 312
             +++   ++ + +L   A E  FR+    K PS
Sbjct: 414 EVLLAACVVHHNAELGKCAAEHLFRID--PKNPS 445



 Score = 60.5 bits (145), Expect = 3e-06,   Method: Compositional matrix adjust.
 Identities = 29/100 (29%), Positives = 60/100 (60%)

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
           + GF S+  V  SL+D Y++C  ++ + +VFE +PS  +V +  ++ G+ + G   +A++
Sbjct: 1   RKGFGSDQHVGNSLIDMYTKCVEMDEAVKVFESLPSVTIVSWNILITGFGQEGSCAKAVE 60

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM 544
           +L +M + G  P++VT+  +LA C  +  V   + +F+ +
Sbjct: 61  VLSLMQEAGFEPNEVTYSNLLASCIKARDVHSARAMFDKI 100


>gi|110739044|dbj|BAF01440.1| hypothetical protein [Arabidopsis thaliana]
          Length = 720

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 178/598 (29%), Positives = 303/598 (50%), Gaps = 11/598 (1%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSH----GIKESASTFSSVLSVCSNAGFYTE 128
           R+ V++N +I         +++  L  EM+            +T  +VL VC+       
Sbjct: 1   RNFVSWNSMIRVFSDNGFSEESFLLLGEMMEENGDGAFMPDVATLVTVLPVCAREREIGL 60

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  +H   + L     L + + L+D+Y + G    A  +F     +N+ +WN M+  F  
Sbjct: 61  GKGVHGWAVKLRLDKELVLNNALMDMYSKCGCITNAQMIFKMNNNKNVVSWNTMVGGFSA 120

Query: 189 LSRPDEVLRMYNKMKA--EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                    +  +M A  E V+ + ++    V  C     L   K+LH + +K  +V  N
Sbjct: 121 EGDTHGTFDVLRQMLAGGEDVKADEVTILNAVPVCFHESFLPSLKELHCYSLKQEFV-YN 179

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             VANA V  Y+ CGSL  A++ F  I    V SWN+++  +A  +    +L+   +M++
Sbjct: 180 ELVANAFVASYAKCGSLSYAQRVFHGIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKI 239

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
               P   +    L+  S+  ++  GK++HG++ +   +   + V  ++  +Y  C  + 
Sbjct: 240 SGLLPDSFTVCSLLSACSKLKSLRLGKEVHGFIIRNWLER-DLFVYLSVLSLYIHCGELC 298

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           +  A+F++   +SL   N+++T  L +G    A+ +F  MV  GI L  +++     A S
Sbjct: 299 TVQALFDAMEDKSLVSWNTVITGYLQNGFPDRALGVFRQMVLYGIQLCGISMMPVFGACS 358

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           +  S  LG  R  H  A+K   E +  ++CSL+D Y++ G I  S +VF  +   +   +
Sbjct: 359 LLPSLRLG--REAHAYALKHLLEDDAFIACSLIDMYAKNGSITQSSKVFNGLKEKSTASW 416

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
            +++ GY  +G+ +EA+ + E M + G  PD +TFL VL  CNHSG++ EG    + MKS
Sbjct: 417 NAMIMGYGIHGLAKEAIKLFEEMQRTGHNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKS 476

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELL-QQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
            +G+  + +HY+C+IDMLGRAG LDKA  ++ ++     D  +W SLL SCR+H N  +G
Sbjct: 477 SFGLKPNLKHYACVIDMLGRAGQLDKALRVVAEEMSEEADVGIWKSLLSSCRIHQNLEMG 536

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            +VA  L ELEP     Y  +SN Y+ +G++E   ++R+      L +D G S IE+N
Sbjct: 537 EKVAAKLFELEPEKPENYVLLSNLYAGLGKWEDVRKVRQRMNEMSLRKDAGCSWIELN 594



 Score =  122 bits (306), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 189/395 (47%), Gaps = 10/395 (2%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYS---SNRTIDDFVKSGHLNSAKKLFD 68
           TI    P C     L S  L + +C    Q  +Y+   +N  +  + K G L+ A+++F 
Sbjct: 147 TILNAVPVCFHESFLPS--LKELHCYSLKQEFVYNELVANAFVASYAKCGSLSYAQRVFH 204

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
            + ++ + ++N LI G  +   P+ +L  + +M   G+   + T  S+LS CS       
Sbjct: 205 GIRSKTVNSWNALIGGHAQSNDPRLSLDAHLQMKISGLLPDSFTVCSLLSACSKLKSLRL 264

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G ++H  ++      +L++   ++ LY+  G       LFD + +++L +WN ++  + +
Sbjct: 265 GKEVHGFIIRNWLERDLFVYLSVLSLYIHCGELCTVQALFDAMEDKSLVSWNTVITGYLQ 324

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
              PD  L ++ +M   G++  G+S   +   CS+   L  G++ H++ +K   ++ + F
Sbjct: 325 NGFPDRALGVFRQMVLYGIQLCGISMMPVFGACSLLPSLRLGREAHAYALK-HLLEDDAF 383

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           +A +L+D Y+  GS+ ++ K F+ +      SWN+++  Y  + L  +A++LF  MQ   
Sbjct: 384 IACSLIDMYAKNGSITQSSKVFNGLKEKSTASWNAMIMGYGIHGLAKEAIKLFEEMQRTG 443

Query: 309 KRPSIRSFVEFLNFASRTGNVYFG-KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
             P   +F+  L   + +G ++ G + +    +  G      H  + + DM G+   ++ 
Sbjct: 444 HNPDDLTFLGVLTACNHSGLIHEGLRYLDQMKSSFGLKPNLKHY-ACVIDMLGRAGQLDK 502

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           ++ V   A   S E    +  SLL S  I   +EM
Sbjct: 503 ALRVV--AEEMSEEADVGIWKSLLSSCRIHQNLEM 535


>gi|302801912|ref|XP_002982712.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
 gi|300149811|gb|EFJ16465.1| hypothetical protein SELMODRAFT_116683 [Selaginella moellendorffii]
          Length = 734

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 167/588 (28%), Positives = 299/588 (50%), Gaps = 16/588 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++   N  +  + + G +    K+FD MP +++V++N +IS   +  +P+QAL LY  M 
Sbjct: 147 DVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQALELYHRMK 206

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              ++ +   F+S+L+ C++ G    G  IH R+ SLG   ++ + + L+++Y + G   
Sbjct: 207 RERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLGLQRDIVMENALINMYSKCGCMD 266

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            AL++F  L  R++ TW  M+  + +L    E    Y++M+ + V P   +F  ++  CS
Sbjct: 267 EALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAFAFYDRMRRDCVSPTSATFVALLSACS 326

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L++GK LH  V   G+  + + V  AL+  YS CGSL +A+  F  +   D +SW+
Sbjct: 327 T---LEQGKHLHEEVKAFGFESITV-VETALMFMYSRCGSLEDAEFLFAKMQQKDYVSWS 382

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++V+ +A +     AL LF +M L   + S+ +F   L   S   +    K I   +   
Sbjct: 383 AMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRELIDWS 442

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G D     +++ L   Y KC  +E +  +F+    R +     ++      G+ K A+E+
Sbjct: 443 GIDKMD-SIRADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALEL 501

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC--CAIKSGFESNIAVSCSLMD 460
           F  M  EG+  D VT S+ L+A S     NL   R +H    A + G  S+  +   L++
Sbjct: 502 FHRMKPEGVEPDSVTFSSVLQACS-----NLEDGREVHARILAAQGGKMSDF-LGNGLIN 555

Query: 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520
            Y+RCG +  + Q+FE +   + + +++IM   +R+G   + +D   +M+  G++PD VT
Sbjct: 556 MYARCGSMRDARQIFESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVT 615

Query: 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580
            + +L  C+H+G+  E    F  + S + +    +HY CM+D+L RAG LD+AEEL+   
Sbjct: 616 LIAILNSCSHAGLTDEACHYFTWIISDFELPHLDEHYQCMVDLLCRAGRLDEAEELISMI 675

Query: 581 PGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE--PVDFAVYSQV 626
               D +  +++L +C+   +   G R A  +   E     F + SQ+
Sbjct: 676 D-RPDVVTLNTMLAACKNQQDLHRGARTAAQMQSTESCAAPFVLLSQI 722



 Score =  251 bits (642), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 157/549 (28%), Positives = 284/549 (51%), Gaps = 15/549 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G L  AK  FDE+  ++   +NL+ISG  +    ++AL L+ +M    I  +   F
Sbjct: 59  YAKCGCLADAKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKM---DIPPNGFIF 115

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +S L+ C+  G   +G +IH RVL S     ++ + + LV +Y R G  +  + +FD +P
Sbjct: 116 ASALAACAGLGDLEQGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMP 175

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            +NL +WN M+ AF +   P++ L +Y++MK E +EPNG  F  ++  C+    L  G  
Sbjct: 176 RKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLQLGSS 235

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  +  LG +  +I + NAL++ YS CG + EA + F  +   DV +W S+++ YA   
Sbjct: 236 IHQRITSLG-LQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLG 294

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              +A   + RM+     P+  +FV  L+  S    +  GK +H  V   GF+  +V V+
Sbjct: 295 FGSEAFAFYDRMRRDCVSPTSATFVALLSACS---TLEQGKHLHEEVKAFGFESITV-VE 350

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL  MY +C  +E +  +F     +     ++++TS    G+   A+ +F  M+ EG+ 
Sbjct: 351 TALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQ 410

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           L   T  + L+A S+   + L   + +      SG +   ++   L+ AYS+CG +E + 
Sbjct: 411 LSLPTFCSALQACSLKRDSRLS--KTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEAR 468

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           ++F+++ S +V+ +T ++ GY++ G  + AL++   M   G+ PD VTF  VL  C++  
Sbjct: 469 KIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSN-- 526

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +++G+ V   + +  G        + +I+M  R G +  A ++ +        + WS++
Sbjct: 527 -LEDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDARQIFESMDRSSR-ISWSAI 584

Query: 593 LRSCRVHGN 601
           +  C  HG 
Sbjct: 585 MTLCARHGQ 593



 Score =  190 bits (483), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 131/500 (26%), Positives = 243/500 (48%), Gaps = 16/500 (3%)

Query: 105 GIKES-ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            +KES  S ++ +L  C +    +EG ++H  +   G+G + Y+   +V +Y + G    
Sbjct: 8   ALKESEVSRYARLLQECCSRRNVSEGRRLHDDLRRSGYGDSSYLRRCVVQMYAKCGCLAD 67

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A   FDE+ ++N   WNLM+  +    +  E L +++KM    + PNG  F   +  C+ 
Sbjct: 68  AKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKMD---IPPNGFIFASALAACAG 124

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              L++G+++H  V++   +  ++ V N+LV  Y+ CGS++E  K FD +P  +++SWN+
Sbjct: 125 LGDLEQGREIHKRVLESRSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNA 184

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S +   D    ALEL+ RM+  R  P+   F   L   +  GN+  G  IH  +T LG
Sbjct: 185 MISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLG 244

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                V +++AL +MY KC  ++ ++ VF     R +    S++      G   +A   +
Sbjct: 245 LQRDIV-MENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAFAFY 303

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M  + +       S T  AL +SA + L   + LH      GFES   V  +LM  YS
Sbjct: 304 DRMRRDCVS----PTSATFVAL-LSACSTLEQGKHLHEEVKAFGFESITVVETALMFMYS 358

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           RCG +E +  +F K+   + V +++++  +++ G   +AL +   MI  G+     TF  
Sbjct: 359 RCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCS 418

Query: 524 VLAGCNHSGMVKEGQL--VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
            L  C+   + ++ +L      +    GID      + ++    + G +++A ++  +  
Sbjct: 419 ALQACS---LKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRME 475

Query: 582 GGGDCMMWSSLLRSCRVHGN 601
              D + W+ +++     G+
Sbjct: 476 -SRDVLTWTVMIKGYAQQGD 494



 Score =  154 bits (389), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 124/494 (25%), Positives = 223/494 (45%), Gaps = 15/494 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLS-SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           M   +L P      +L   C S+  L   S +         Q +I   N  I+ + K G 
Sbjct: 205 MKRERLEPNGFVFASLLTACASLGNLQLGSSIHQRITSLGLQRDIVMENALINMYSKCGC 264

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A ++F  +  RD+ T+  +I+G  +     +A   YD M    +  +++TF ++LS 
Sbjct: 265 MDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAFAFYDRMRRDCVSPTSATFVALLSA 324

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS      +G  +H  V + GF     + + L+ +Y R G    A  LF ++ +++  +W
Sbjct: 325 CST---LEQGKHLHEEVKAFGFESITVVETALMFMYSRCGSLEDAEFLFAKMQQKDYVSW 381

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           + M+ +  +   P + L ++ +M  EG++ +  +FC  ++ CS+       K +   +I 
Sbjct: 382 SAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIR-ELID 440

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
              +D    +   LV  YS CG + EA+K FD +   DV++W  ++  YA       ALE
Sbjct: 441 WSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSKAALE 500

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF RM+     P   +F   L   S   N+  G+++H  +        S  + + L +MY
Sbjct: 501 LFHRMKPEGVEPDSVTFSSVLQACS---NLEDGREVHARILAAQGGKMSDFLGNGLINMY 557

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            +C  +  +  +FES    S    +++MT     G   D ++ +  MV+EG+  D VTL 
Sbjct: 558 ARCGSMRDARQIFESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVVPDGVTLI 617

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFE---SNIAVSCSLMDAYSRCGHIELSHQVFE 476
             L + S    A L      +   I S FE    +    C ++D   R G ++ + ++  
Sbjct: 618 AILNSCS---HAGLTDEACHYFTWIISDFELPHLDEHYQC-MVDLLCRAGRLDEAEELIS 673

Query: 477 KIPSPNVVCFTSIM 490
            I  P+VV   +++
Sbjct: 674 MIDRPDVVTLNTML 687


>gi|225450537|ref|XP_002277327.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At1g56570 [Vitis vinifera]
          Length = 607

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 154/519 (29%), Positives = 278/519 (53%), Gaps = 6/519 (1%)

Query: 147 IGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG 206
           + + L+  Y   G    A  LFDE+PER++  W +M+  +   +       ++ +M  E 
Sbjct: 45  LATTLIKSYFGKGLIGEARTLFDEMPERDVVAWTVMIAGYTSCNNHTHAWMVFCEMMNEE 104

Query: 207 VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG-SLIE 265
           ++PN  +   +++ C     L  G+ +H   IK G +D  I+V NAL+D Y+ C  S+ +
Sbjct: 105 LDPNAFTISSVLKACKGMKCLSYGRLVHGLAIKHG-LDGFIYVDNALMDMYATCCVSMDD 163

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A   F  I + + +SW ++++ Y   D  +  L +F +M L     +  SF   +   + 
Sbjct: 164 ACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLRVFRQMLLEEVELNPFSFSIAVRACTS 223

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
            G+  FG+Q+H  VTK GF+  ++ V +++ DMY +C+    +   F     R L   N+
Sbjct: 224 IGSHTFGEQLHAAVTKHGFE-SNLPVMNSILDMYCRCSCFSEANRYFYEMNQRDLITWNT 282

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           L+     S N  +++ +F  M  EG   +  T ++ + A +  A  N G  + +H   I+
Sbjct: 283 LIAGYERS-NPTESLYVFSMMESEGFSPNCFTFTSIMAACATLAFLNCG--QQIHGRIIR 339

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            G + N+A+S +L+D YS+CG+I  SHQVF  +   ++V +T++M GY  +G G EA+++
Sbjct: 340 RGLDGNLALSNALIDMYSKCGNIADSHQVFGGMSRRDLVSWTAMMIGYGTHGYGEEAVEL 399

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
            + M++ G+ PD+V F+ +L+ C+H+G+V EG   F  M   Y I  D++ Y C++D+LG
Sbjct: 400 FDKMVRSGIRPDRVVFMAILSACSHAGLVDEGLRYFKLMVGDYNISPDQEIYGCVVDLLG 459

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625
           RAG +++A EL++  P   D  +W   L +C+ H    +G+  A+ +++L P     Y  
Sbjct: 460 RAGKVEEAYELIESMPFKPDECVWGPFLGACKAHTFPNLGKLAAHRILDLRPHMAGTYVM 519

Query: 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +SN Y+  G++    ++R+        ++ G S +EV +
Sbjct: 520 LSNIYAADGKWGEFARLRKLMKRMGNKKETGRSWVEVGN 558



 Score =  162 bits (409), Expect = 6e-37,   Method: Compositional matrix adjust.
 Identities = 126/462 (27%), Positives = 214/462 (46%), Gaps = 9/462 (1%)

Query: 23  IVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKS----GHLNSAKKLFDEMPARDMVTY 78
           IV  S  L+ +    PNP       +      +KS    G +  A+ LFDEMP RD+V +
Sbjct: 18  IVRNSIQLVQNCTTPPNPPFIPKGPSVLATTLIKSYFGKGLIGEARTLFDEMPERDVVAW 77

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
            ++I+G     +   A  ++ EM++  +  +A T SSVL  C      + G  +H   + 
Sbjct: 78  TVMIAGYTSCNNHTHAWMVFCEMMNEELDPNAFTISSVLKACKGMKCLSYGRLVHGLAIK 137

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSV-RALDLFDELPERNLATWNLMLRAFCELSRPDEVLR 197
            G    +Y+ + L+D+Y     S+  A  +F  +  +N  +W  ++  +         LR
Sbjct: 138 HGLDGFIYVDNALMDMYATCCVSMDDACMVFRGIHLKNEVSWTTLIAGYTHRDDGYGGLR 197

Query: 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257
           ++ +M  E VE N  SF   VR C+       G+QLH+ V K G+ + N+ V N+++D Y
Sbjct: 198 VFRQMLLEEVELNPFSFSIAVRACTSIGSHTFGEQLHAAVTKHGF-ESNLPVMNSILDMY 256

Query: 258 SACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFV 317
             C    EA + F  +   D+I+WN++++ Y   +   ++L +F  M+     P+  +F 
Sbjct: 257 CRCSCFSEANRYFYEMNQRDLITWNTLIAGYERSNPT-ESLYVFSMMESEGFSPNCFTFT 315

Query: 318 EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377
             +   +    +  G+QIHG + + G D G++ + +AL DMY KC  I  S  VF     
Sbjct: 316 SIMAACATLAFLNCGQQIHGRIIRRGLD-GNLALSNALIDMYSKCGNIADSHQVFGGMSR 374

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           R L    ++M      G  ++AVE+F  MV  GI  D V     L A S +   + G  R
Sbjct: 375 RDLVSWTAMMIGYGTHGYGEEAVELFDKMVRSGIRPDRVVFMAILSACSHAGLVDEG-LR 433

Query: 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
                        +  +   ++D   R G +E ++++ E +P
Sbjct: 434 YFKLMVGDYNISPDQEIYGCVVDLLGRAGKVEEAYELIESMP 475


>gi|145332693|ref|NP_001078212.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274431|sp|Q9LW32.1|PP258_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At3g26782, mitochondrial; Flags: Precursor
 gi|9279668|dbj|BAB01225.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332643694|gb|AEE77215.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 659

 Score =  262 bits (669), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 162/509 (31%), Positives = 269/509 (52%), Gaps = 18/509 (3%)

Query: 167 LFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM 225
           LF+   ++ ++ +WN ++          E L  ++ M+   + P   SF   ++ CS   
Sbjct: 31  LFNRYVDKTDVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLF 90

Query: 226 LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIV 285
            +  GKQ H      G+   +IFV++AL+  YS CG L +A+K FD IP  +++SW S++
Sbjct: 91  DIFSGKQTHQQAFVFGY-QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMI 149

Query: 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSF------VEFLNFASRTGNVYFGKQIHGYV 339
             Y       DA+ LF  + +         F      V  ++  SR       + IH +V
Sbjct: 150 RGYDLNGNALDAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFV 209

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAV----FESAPGRSLECCNSLMTSLLHSGN 395
            K GFD G V V + L D Y K    E  VAV    F+    +     NS+M+    SG 
Sbjct: 210 IKRGFDRG-VSVGNTLLDAYAKGG--EGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGM 266

Query: 396 IKDAVEMFGFMV-DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             +A E+F  +V ++ +  + +TLST L A+S S +  +G C  +H   I+ G E ++ V
Sbjct: 267 SNEAFEVFRRLVKNKVVTFNAITLSTVLLAVSHSGALRIGKC--IHDQVIRMGLEDDVIV 324

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
             S++D Y +CG +E + + F+++ + NV  +T+++ GY  +G   +AL++   MI  G+
Sbjct: 325 GTSIIDMYCKCGRVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGV 384

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574
            P+ +TF+ VLA C+H+G+  EG   FN+MK  +G++   +HY CM+D+LGRAG L KA 
Sbjct: 385 RPNYITFVSVLAACSHAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAY 444

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           +L+Q+     D ++WSSLL +CR+H N  +       L EL+  +   Y  +S+ Y++ G
Sbjct: 445 DLIQRMKMKPDSIIWSSLLAACRIHKNVELAEISVARLFELDSSNCGYYMLLSHIYADAG 504

Query: 635 EFEVSMQIRETALARKLTRDIGHSLIEVN 663
            ++   ++R     R L +  G SL+E+N
Sbjct: 505 RWKDVERVRMIMKNRGLVKPPGFSLLELN 533



 Score =  133 bits (335), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/428 (23%), Positives = 204/428 (47%), Gaps = 15/428 (3%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           D+ ++N +I+   +     +AL  +  M    +  + S+F   +  CS+      G Q H
Sbjct: 40  DVFSWNSVIADLARSGDSAEALLAFSSMRKLSLYPTRSSFPCAIKACSSLFDIFSGKQTH 99

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            +    G+  ++++ S L+ +Y   G    A  +FDE+P+RN+ +W  M+R +       
Sbjct: 100 QQAFVFGYQSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNAL 159

Query: 194 EVLRMYNKMKAEGVEPNGLSF------CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           + + ++  +  +  + +   F        ++  CS        + +HS VIK G+ D  +
Sbjct: 160 DAVSLFKDLLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGF-DRGV 218

Query: 248 FVANALVDFYSACGS--LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
            V N L+D Y+  G   +  A+K FD I   D +S+NSI+S+YA   +  +A E+F R+ 
Sbjct: 219 SVGNTLLDAYAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRL- 277

Query: 306 LCRKRPSIRSFV--EFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           +  K  +  +      L   S +G +  GK IH  V ++G +   V V +++ DMY KC 
Sbjct: 278 VKNKVVTFNAITLSTVLLAVSHSGALRIGKCIHDQVIRMGLE-DDVIVGTSIIDMYCKCG 336

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            +E++   F+    +++    +++      G+   A+E+F  M+D G+  + +T  + L 
Sbjct: 337 RVETARKAFDRMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLA 396

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
           A S  A  ++   R  +    + G E  +     ++D   R G ++ ++ + +++   P+
Sbjct: 397 ACS-HAGLHVEGWRWFNAMKGRFGVEPGLEHYGCMVDLLGRAGFLQKAYDLIQRMKMKPD 455

Query: 483 VVCFTSIM 490
            + ++S++
Sbjct: 456 SIIWSSLL 463



 Score =  111 bits (278), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 89/372 (23%), Positives = 178/372 (47%), Gaps = 15/372 (4%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           Q +I+ S+  I  +   G L  A+K+FDE+P R++V++  +I G     +   A+ L+ +
Sbjct: 108 QSDIFVSSALIVMYSTCGKLEDARKVFDEIPKRNIVSWTSMIRGYDLNGNALDAVSLFKD 167

Query: 101 MVSHGIKESASTF------SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154
           ++     +  + F       SV+S CS          IH  V+  GF   + +G+ L+D 
Sbjct: 168 LLVDENDDDDAMFLDSMGLVSVISACSRVPAKGLTESIHSFVIKRGFDRGVSVGNTLLDA 227

Query: 155 YMRMGPS--VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNG 211
           Y + G      A  +FD++ +++  ++N ++  + +    +E   ++ ++ K + V  N 
Sbjct: 228 YAKGGEGGVAVARKIFDQIVDKDRVSYNSIMSVYAQSGMSNEAFEVFRRLVKNKVVTFNA 287

Query: 212 LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
           ++   ++   S    L  GK +H  VI++G  D ++ V  +++D Y  CG +  A+K+FD
Sbjct: 288 ITLSTVLLAVSHSGALRIGKCIHDQVIRMGLED-DVIVGTSIIDMYCKCGRVETARKAFD 346

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG-NVY 330
            +   +V SW ++++ Y  +     ALELF  M     RP+  +FV  L   S  G +V 
Sbjct: 347 RMKNKNVRSWTAMIAGYGMHGHAAKALELFPAMIDSGVRPNYITFVSVLAACSHAGLHVE 406

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
             +  +    + G + G  H    + D+ G+   ++ +  + +      ++  + + +SL
Sbjct: 407 GWRWFNAMKGRFGVEPGLEHY-GCMVDLLGRAGFLQKAYDLIQRMK---MKPDSIIWSSL 462

Query: 391 LHSGNIKDAVEM 402
           L +  I   VE+
Sbjct: 463 LAACRIHKNVEL 474


>gi|356514087|ref|XP_003525738.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 701

 Score =  262 bits (669), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 185/661 (27%), Positives = 321/661 (48%), Gaps = 26/661 (3%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           +IT L   C     L   L LDS+     +LN+         + +   L  A KLF+E P
Sbjct: 19  SITQLHSQC-----LKVGLALDSFVVT--KLNVL--------YARYASLCHAHKLFEETP 63

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS---TFSSVLSVCSNAGFYTE 128
            + +  +N L+          + L L+ +M +  + E      T S  L  CS       
Sbjct: 64  CKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAVTEERPDNYTVSIALKSCSGLQKLEL 123

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  IH   L      ++++GS L++LY + G    A+ +F E P+ ++  W  ++  + +
Sbjct: 124 GKMIH-GFLKKKIDSDMFVGSALIELYSKCGQMNDAVKVFTEYPKPDVVLWTSIITGYEQ 182

Query: 189 LSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
              P+  L  +++M   E V P+ ++       C+     + G+ +H  V + G+ D  +
Sbjct: 183 NGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGF-DTKL 241

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            +AN++++ Y   GS+  A   F  +P  D+ISW+S+V+ YAD     +AL LF  M   
Sbjct: 242 CLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDK 301

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
           R   +  + +  L   + + N+  GKQIH      GF+   + V +AL DMY KC   E+
Sbjct: 302 RIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGFEL-DITVSTALMDMYLKCFSPEN 360

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           ++ +F   P + +     L +     G    ++ +F  M+  G   D + L   L A S 
Sbjct: 361 AIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSNGTRPDAIALVKILAASSE 420

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
                   C  LH    KSGF++N  +  SL++ Y++C  I+ +++VF+ +   +VV ++
Sbjct: 421 LGIVQQALC--LHAFVTKSGFDNNEFIGASLIELYAKCSSIDNANKVFKGLRHTDVVTWS 478

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           SI+  Y  +G G EAL +   M     + P+ VTF+ +L+ C+H+G+++EG  +F+ M +
Sbjct: 479 SIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSILSACSHAGLIEEGIKMFHVMVN 538

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            Y +  + +HY  M+D+LGR G LDKA +++   P      +W +LL +CR+H N  IG 
Sbjct: 539 EYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMPMQAGPHVWGALLGACRIHQNIKIGE 598

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSC 665
             A  L  L+P     Y+ +SN Y     +  + ++R      +L + +G S++E+ N  
Sbjct: 599 LAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKENRLKKIVGQSMVEIKNEV 658

Query: 666 H 666
           H
Sbjct: 659 H 659



 Score =  163 bits (412), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 116/478 (24%), Positives = 230/478 (48%), Gaps = 5/478 (1%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           T+  P   T++    +C+ +  L    ++  + +     +++  +  I+ + K G +N A
Sbjct: 99  TEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKIDSDMFVGSALIELYSKCGQMNDA 158

Query: 64  KKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESASTFSSVLSVCSN 122
            K+F E P  D+V +  +I+G  +   P+ AL  +  MV    +     T  S  S C+ 
Sbjct: 159 VKVFTEYPKPDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQ 218

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
              +  G  +H  V   GF   L + + +++LY + G    A +LF E+P +++ +W+ M
Sbjct: 219 LSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRIAANLFREMPYKDIISWSSM 278

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  + +       L ++N+M  + +E N ++    +R C+    L+EGKQ+H   +  G+
Sbjct: 279 VACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKQIHKLAVNYGF 338

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            +++I V+ AL+D Y  C S   A + F+ +P  DV+SW  + S YA+  +   +L +F 
Sbjct: 339 -ELDITVSTALMDMYLKCFSPENAIELFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFC 397

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M     RP   + V+ L  +S  G V     +H +VTK GFD+    + ++L ++Y KC
Sbjct: 398 NMLSNGTRPDAIALVKILAASSELGIVQQALCLHAFVTKSGFDNNEF-IGASLIELYAKC 456

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTT 421
           + I+++  VF+      +   +S++ +    G  ++A+++   M +   +  ++VT  + 
Sbjct: 457 SSIDNANKVFKGLRHTDVVTWSSIIAAYGFHGQGEEALKLSHQMSNHSDVKPNDVTFVSI 516

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           L A S +     G  ++ H    +     NI     ++D   R G ++ +  +   +P
Sbjct: 517 LSACSHAGLIEEG-IKMFHVMVNEYQLMPNIEHYGIMVDLLGRMGELDKALDMINNMP 573


>gi|302756495|ref|XP_002961671.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
 gi|300170330|gb|EFJ36931.1| hypothetical protein SELMODRAFT_264 [Selaginella moellendorffii]
          Length = 934

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 168/598 (28%), Positives = 292/598 (48%), Gaps = 25/598 (4%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  +  + K G L  A  +F  +P R +VT N ++  C        AL L+  MV  GI+
Sbjct: 347 NAIVSMYGKCGSLEDAWDVFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIE 406

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               TF S L  CS     + G   H R+L  G  L++++ + LV++Y + G    A  +
Sbjct: 407 FDNITFLSALCACSGTSGLSHGEFFHARMLECGLELDIFVANALVNMYGKCGKVEAAEHV 466

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           F+ELPE+++ TWN M+ A+ +       L ++  M   G +P+ ++F   +  C     L
Sbjct: 467 FEELPEQDVRTWNAMILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAITLNACYHPRFL 526

Query: 228 DEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
              + +HS + + G    N  V NALV  Y   G L E  + F+ +  + + SWN +++ 
Sbjct: 527 ---RDVHSLISETG--ISNTVVQNALVVMYGRFGLLEEGYQVFEKLDQESITSWNVMIAS 581

Query: 288 YADY---DLIF---------DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG-KQ 334
            A      +IF         +AL++F+RMQ     P   SFV  +   S  G        
Sbjct: 582 CAQTCWNSVIFAHVQSGRDSEALKMFWRMQQAGVWPDKTSFVAVVKAYSNVGMTEPEIDW 641

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +   +     + G V + +AL  MYG+C     +  +F+S   R     N++M+      
Sbjct: 642 LRAVIANSDVEDG-VPIGNALISMYGRCGSFGKARDLFDSMAERDAVTWNTMMSVSEQLE 700

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS--CRLLHCCAIKSGFESNI 452
           + +D++++F  M+ EG   D+VT+ T L   +   +   G   C  L      +   +N 
Sbjct: 701 HGRDSIQLFRQMLQEGTPPDKVTILTVLNVCASLPALQEGKAICVWLD----HTPLSANQ 756

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            +  ++++ Y++CG  + + ++F  +   + V + +++  Y     GR A  + + M   
Sbjct: 757 MIGNAILNMYAKCGSRDEARRIFSVMQGRDAVSWNALIGAYGSYSRGRYAFQIFQAMQLE 816

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G  PD VTF  +L+ C+H G++ E    F  M+  Y ++A+  HY C++D+LGR G + +
Sbjct: 817 GSTPDAVTFTTILSVCSHGGLLGEAVKWFRWMREDYYVEAETGHYGCIVDLLGRLGRVPE 876

Query: 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           AEE+ ++ P G D ++W++LL +C+VHG    G+R A  L+EL+P   + Y  +S  Y
Sbjct: 877 AEEVAEKMPAGTDPIVWTTLLSACQVHGETQRGKRAAERLVELDPEVTSAYVVLSTIY 934



 Score =  236 bits (603), Expect = 2e-59,   Method: Compositional matrix adjust.
 Identities = 174/632 (27%), Positives = 304/632 (48%), Gaps = 32/632 (5%)

Query: 48  NRTIDDFVKSGHLNSAKKLFD---EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           N  I  ++K G L  A ++F    E    ++V +  LI+   +    K A+ L+ +M   
Sbjct: 44  NWLIQMYLKCGSLIDASQVFYQLLETSVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLE 103

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G      T  ++   C N     +G +IH     L    ++ +GS L+ +Y + G    A
Sbjct: 104 GNSPDRITLVTIFEACGNPENLEDGKKIHAY---LSCNSDVVLGSSLITMYGKCGSLSEA 160

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +F  + E N   WN ++ AF +  R +E + +Y +M   G  P+  +F  ++   S  
Sbjct: 161 CLMFQSMEEWNTVAWNSLMGAFIQHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAISSL 220

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             L  GK +H  + + G  D ++ V  ALV+ Y  CGS++EA + FD +P  DVI W+++
Sbjct: 221 ESLRHGKLVHDTLAEAGHED-DVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAV 279

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S + +     ++L LF +MQL   RP+  + V  L+       +  GK IH  V + G+
Sbjct: 280 ISAHVNCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGY 339

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           + G + V +A+  MYGKC  +E +  VF   P RS+  CN +M +    G+   A+++F 
Sbjct: 340 E-GDLIVGNAIVSMYGKCGSLEDAWDVFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFR 398

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
           +MV EGI  D +T  + L A   S ++ L      H   ++ G E +I V+ +L++ Y +
Sbjct: 399 YMVHEGIEFDNITFLSALCA--CSGTSGLSHGEFFHARMLECGLELDIFVANALVNMYGK 456

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG +E +  VFE++P  +V  + +++  Y +N   R  L +   M+Q G  PD+VTF   
Sbjct: 457 CGKVEAAEHVFEELPEQDVRTWNAMILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAIT 516

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L  C H   +++     +S+ S  GI ++    + ++ M GR G+L++  ++ ++     
Sbjct: 517 LNACYHPRFLRD----VHSLISETGI-SNTVVQNALVVMYGRFGLLEEGYQVFEKLD-QE 570

Query: 585 DCMMWSSLLRSC-RVHGNEII------GRRVANILMELEPVDFAVYSQVSNF------YS 631
               W+ ++ SC +   N +I      GR    + M        V+   ++F      YS
Sbjct: 571 SITSWNVMIASCAQTCWNSVIFAHVQSGRDSEALKMFWRMQQAGVWPDKTSFVAVVKAYS 630

Query: 632 EIGEFEVSMQIRETALARKLTRD---IGHSLI 660
            +G  E  +      +A     D   IG++LI
Sbjct: 631 NVGMTEPEIDWLRAVIANSDVEDGVPIGNALI 662



 Score =  203 bits (516), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 166/626 (26%), Positives = 297/626 (47%), Gaps = 26/626 (4%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLF 67
           P   T+ T+   C +   L     + +Y   N  + + SS  T+  + K G L+ A  +F
Sbjct: 107 PDRITLVTIFEACGNPENLEDGKKIHAYLSCNSDVVLGSSLITM--YGKCGSLSEACLMF 164

Query: 68  DEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127
             M   + V +N L+    +    ++A+ LY EM+  G   S  TF +VL+  S+     
Sbjct: 165 QSMEEWNTVAWNSLMGAFIQHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLR 224

Query: 128 EGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC 187
            G  +H  +   G   ++ + + LV++Y + G  V A+++FD +P  ++  W+ ++ A  
Sbjct: 225 HGKLVHDTLAEAGHEDDVVVQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHV 284

Query: 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
             +  +E LR++ KM+ EG  PN ++   ++  C     L+ GK +H  V++ G+ + ++
Sbjct: 285 NCAEYEESLRLFRKMQLEGNRPNNVTLVSVLSACEGPQALETGKGIHECVVEAGY-EGDL 343

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            V NA+V  Y  CGSL +A   F  +P   V++ N ++   A       AL+LF  M   
Sbjct: 344 IVGNAIVSMYGKCGSLEDAWDVFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHE 403

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
                  +F+  L   S T  +  G+  H  + + G +   + V +AL +MYGKC  +E+
Sbjct: 404 GIEFDNITFLSALCACSGTSGLSHGEFFHARMLECGLEL-DIFVANALVNMYGKCGKVEA 462

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
           +  VFE  P + +   N+++ + + +   +  + +F  M+  G   DEVT + TL     
Sbjct: 463 AEHVFEELPEQDVRTWNAMILAYVQNEEERSGLLVFRHMMQSGYKPDEVTFAITL----- 517

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK-----IPSPN 482
           +A  +    R +H    ++G  SN  V  +L+  Y R G +E  +QVFEK     I S N
Sbjct: 518 NACYHPRFLRDVHSLISETGI-SNTVVQNALVVMYGRFGLLEEGYQVFEKLDQESITSWN 576

Query: 483 VV-------CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
           V+       C+ S++  + ++G   EAL M   M Q G+ PDK +F+ V+   ++ GM +
Sbjct: 577 VMIASCAQTCWNSVIFAHVQSGRDSEALKMFWRMQQAGVWPDKTSFVAVVKAYSNVGMTE 636

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
                  ++ +   ++      + +I M GR G   KA +L   +    D + W++++  
Sbjct: 637 PEIDWLRAVIANSDVEDGVPIGNALISMYGRCGSFGKARDLF-DSMAERDAVTWNTMMSV 695

Query: 596 CRV--HGNEIIGRRVANILMELEPVD 619
                HG + I +    +L E  P D
Sbjct: 696 SEQLEHGRDSI-QLFRQMLQEGTPPD 720



 Score =  197 bits (501), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 119/484 (24%), Positives = 247/484 (51%), Gaps = 12/484 (2%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           F  +L  CS +     G QIH  +       +  +G+ L+ +Y++ G  + A  +F +L 
Sbjct: 8   FVDLLRQCSRSKDLARGRQIHASITRSSAPQDPVVGNWLIQMYLKCGSLIDASQVFYQLL 67

Query: 173 ER---NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
           E    NL  W  ++ A+    +    +R++ +M+ EG  P+ ++   +   C     L++
Sbjct: 68  ETSVVNLVAWTALIAAYARNGQTKLAIRLFQQMQLEGNSPDRITLVTIFEACGNPENLED 127

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           GK++H+++      + ++ + ++L+  Y  CGSL EA   F  +   + ++WNS++  + 
Sbjct: 128 GKKIHAYLS----CNSDVVLGSSLITMYGKCGSLSEACLMFQSMEEWNTVAWNSLMGAFI 183

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
            +D + +A+EL++ M  C   PS  +F+  L   S   ++  GK +H  + + G +   V
Sbjct: 184 QHDRVEEAMELYWEMLQCGFLPSRPTFLTVLAAISSLESLRHGKLVHDTLAEAGHEDDVV 243

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            VQ+AL +MYGKC  +  +V VF+  P   +   ++++++ ++    ++++ +F  M  E
Sbjct: 244 -VQTALVNMYGKCGSVVEAVEVFDRMPRHDVILWSAVISAHVNCAEYEESLRLFRKMQLE 302

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G   + VTL + L A     +   G  + +H C +++G+E ++ V  +++  Y +CG +E
Sbjct: 303 GNRPNNVTLVSVLSACEGPQALETG--KGIHECVVEAGYEGDLIVGNAIVSMYGKCGSLE 360

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +  VF ++P  +VV    +M   +  G    AL +   M+  G+  D +TFL  L  C+
Sbjct: 361 DAWDVFHRVPRRSVVTCNGMMGACAVQGDSSGALKLFRYMVHEGIEFDNITFLSALCACS 420

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            +  +  G+  F++     G++ D    + +++M G+ G ++ AE + ++ P   D   W
Sbjct: 421 GTSGLSHGEF-FHARMLECGLELDIFVANALVNMYGKCGKVEAAEHVFEELP-EQDVRTW 478

Query: 590 SSLL 593
           ++++
Sbjct: 479 NAMI 482


>gi|224096616|ref|XP_002310672.1| predicted protein [Populus trichocarpa]
 gi|222853575|gb|EEE91122.1| predicted protein [Populus trichocarpa]
          Length = 551

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 148/545 (27%), Positives = 283/545 (51%), Gaps = 5/545 (0%)

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           L +C        G  IH ++L+ GF  N+++ + L+  Y ++G +V A  +FD +PER +
Sbjct: 4   LQLCIETKAKKPGHLIHNQILTNGFASNIHLSTKLIIFYSKLGDTVSARKVFDRMPERTV 63

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236
            +W+  +  + +     + L ++  M   G + N  ++  ++R C+    L  G Q+   
Sbjct: 64  VSWSAQISGYSQNGCYQDALLVFLDMLRAGFKANQFTYGSVLRACTGLRCLQRGMQIQGC 123

Query: 237 VIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
           + K  +   N+ V +AL+D +S CG + +A   F  +   DV+SWN+I+  YA      D
Sbjct: 124 LEKSRFAS-NLIVQSALLDLHSKCGKMEDASYLFGMMEERDVVSWNAIIGAYAVQGFSGD 182

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           +  +F  M      P + +F   L  +    +V    QIH  + +LG+    + +  +L 
Sbjct: 183 SFRMFRSMMQEGMSPDLFTFGSVLKASGMASDVIRVCQIHQLIIQLGYG-SHISLSGSLI 241

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK-DAVEMFGFMVDEGIGLDE 415
           D Y KC  + S+  +++S P + +  C +LMT      N    A+++F  +    + +D+
Sbjct: 242 DAYAKCESLASAHCLYKSMPMKDMISCTALMTGYARDSNYSSKALDLFKEIQQMHMKIDD 301

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           V L +     +  +S ++G  R +H  A+K     ++A+  +L+D Y++ G I+ +++ F
Sbjct: 302 VILCSMFNICANISSLSVG--RQIHALALKCKPTYDVAMGNALIDMYAKSGEIKDANRAF 359

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
            ++   NV+ +TS++ GY  +G G EA+ + + M   GL P+ +TFL +L  CNH G+  
Sbjct: 360 NEMEEKNVISWTSLITGYGSHGHGHEAIALFKKMEYEGLKPNDITFLSLLFACNHCGLTG 419

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG   FN+M S Y I    +H+SCM+D+  R G+L++A  L+ +     +  +W ++L +
Sbjct: 420 EGWECFNNMISKYNILPRAEHFSCMVDLFARGGLLEEAYNLINKMNIKPNASLWGAILGA 479

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           C ++GN  +    A  L +++P +   Y  +++ Y+  G ++ + ++R+    R L +  
Sbjct: 480 CYIYGNMPLAEEAAIHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRKLMEERNLKKAP 539

Query: 656 GHSLI 660
           G+S I
Sbjct: 540 GYSFI 544



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 134/552 (24%), Positives = 251/552 (45%), Gaps = 54/552 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI+ S + I  + K G   SA+K+FD MP R +V+++  ISG  +    + AL ++ +M+
Sbjct: 31  NIHLSTKLIIFYSKLGDTVSARKVFDRMPERTVVSWSAQISGYSQNGCYQDALLVFLDML 90

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G K +  T+ SVL  C+       G+QI   +    F  NL + S L+DL+ + G   
Sbjct: 91  RAGFKANQFTYGSVLRACTGLRCLQRGMQIQGCLEKSRFASNLIVQSALLDLHSKCGKME 150

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LF  + ER++ +WN ++ A+       +  RM+  M  EG+ P+  +F  +++   
Sbjct: 151 DASYLFGMMEERDVVSWNAIIGAYAVQGFSGDSFRMFRSMMQEGMSPDLFTFGSVLKASG 210

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +   +    Q+H  +I+LG+   +I ++ +L+D Y+ C SL  A   +  +P+ D+IS  
Sbjct: 211 MASDVIRVCQIHQLIIQLGY-GSHISLSGSLIDAYAKCESLASAHCLYKSMPMKDMISCT 269

Query: 283 SIVSIYA-DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           ++++ YA D +    AL+LF  +Q    +          N  +   ++  G+QIH    K
Sbjct: 270 ALMTGYARDSNYSSKALDLFKEIQQMHMKIDDVILCSMFNICANISSLSVGRQIHALALK 329

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
               +  V + +AL DMY K   I+ +   F     +++    SL+T     G+  +A+ 
Sbjct: 330 CKPTY-DVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIA 388

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLM 459
           +F  M  EG+  +++T  + L A +             HC     G+E  +N+    +++
Sbjct: 389 LFKKMEYEGLKPNDITFLSLLFACN-------------HCGLTGEGWECFNNMISKYNIL 435

Query: 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
                                P    F+ +++ ++R G+  EA +++  M    + P+  
Sbjct: 436 ---------------------PRAEHFSCMVDLFARGGLLEEAYNLINKM---NIKPNAS 471

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ-HYSCMIDMLGRAGILDKA----- 573
            +  +L  C   G +    L   +   ++ +D +   +Y  + D+   AG  D A     
Sbjct: 472 LWGAILGACYIYGNMP---LAEEAAIHLFKMDPENSVNYVVLADIYAAAGSWDNAWKMRK 528

Query: 574 ---EELLQQTPG 582
              E  L++ PG
Sbjct: 529 LMEERNLKKAPG 540



 Score = 65.5 bits (158), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 43/151 (28%), Positives = 78/151 (51%), Gaps = 8/151 (5%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++   N  ID + KSG +  A + F+EM  ++++++  LI+G G   H  +A+ L+ 
Sbjct: 332 PTYDVAMGNALIDMYAKSGEIKDANRAFNEMEEKNVISWTSLITGYGSHGHGHEAIALFK 391

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG----SPLVDLY 155
           +M   G+K +  TF S+L  C++ G   EG +    ++S     N+       S +VDL+
Sbjct: 392 KMEYEGLKPNDITFLSLLFACNHCGLTGEGWECFNNMIS---KYNILPRAEHFSCMVDLF 448

Query: 156 MRMGPSVRALDLFDELPER-NLATWNLMLRA 185
            R G    A +L +++  + N + W  +L A
Sbjct: 449 ARGGLLEEAYNLINKMNIKPNASLWGAILGA 479


>gi|449445246|ref|XP_004140384.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Cucumis sativus]
          Length = 688

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 194/686 (28%), Positives = 333/686 (48%), Gaps = 51/686 (7%)

Query: 20  CTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY 78
           C ++        + +Y +    LN ++ +N  I  + +  ++  A+K+FDEM  R++VT+
Sbjct: 13  CATVRAFKRGNAIHAYLRKFGGLNDVFLANNLISMYAEFFNVRDAEKVFDEMTDRNIVTW 72

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
             ++S       P +A+ LY++M       +   +S+VL  C   G    G  I  R+  
Sbjct: 73  TTMVSAFTDGGRPYEAIRLYNDM-PKSETPNGYMYSAVLKACGFVGDLGLGKLIQERIYE 131

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
                +  + + L+D++++ G    A+++F  +      TWN+++  + +     E  ++
Sbjct: 132 DKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISRATTTTWNIIVSGYSKAGLMVEAEKL 191

Query: 199 YNKMKAEGVEPNGLSFCYMVRG-----------------------------CSIGM---- 225
           ++ M      PN +S+  M+ G                             C++ +    
Sbjct: 192 FHCMP----HPNVVSWNSMIAGFADNGSQRALEFVSMMHKRCIKLDDFTFPCALKISALH 247

Query: 226 -LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK------SFDFIPVDDV 278
            LL  GKQ+HS+V KLG+ + + F  +AL+D YS C  LIEA K      SF+    D++
Sbjct: 248 GLLFIGKQVHSYVTKLGY-ESSCFTLSALIDMYSNCNDLIEAVKLFDQHSSFNASISDNL 306

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
             WNS++S Y   +    AL L   +          +F   L       +   G Q+HG 
Sbjct: 307 ALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYTFGGALKVCINLLSRRVGLQLHGL 366

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           +   G++   V V S L D+Y K   I+ ++A+F   P + +   + L+      G    
Sbjct: 367 IVTCGYELDYV-VGSILVDLYAKLANIDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWL 425

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A  MF  M++    +D   +ST LK  S  AS  L S + +H   +KSG+E       SL
Sbjct: 426 AFSMFKGMLELVNEIDHFVISTILKVCSNLAS--LRSGKQVHALCVKSGYEMEGFTITSL 483

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D YS+CG IE +  +F      ++V +T I+ G  +NG   EA+     MI+ G+ P++
Sbjct: 484 LDMYSKCGEIEDALTLFCCEQEKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIRSGITPNE 543

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TFL VL+ C ++G+V+E + +FNSMKSVYG++   +HY CM+D+L   G+ ++AE+L+ 
Sbjct: 544 ITFLGVLSACRYAGLVEEARSIFNSMKSVYGLEPHLEHYCCMVDLLASVGLPEEAEKLIA 603

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   +   W +LL +C    +  +  RVA+ L+E  P D + Y  +SN Y+ +G +  
Sbjct: 604 NMPFEPNQTTWRTLLGACGTRNDTKLINRVADGLLEATPNDPSTYVTLSNAYASLGMWHT 663

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
             + RE A  +   +  G S IEV+S
Sbjct: 664 LSKARE-ASKKFGIKKAGLSWIEVSS 688


>gi|242087005|ref|XP_002439335.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
 gi|241944620|gb|EES17765.1| hypothetical protein SORBIDRAFT_09g004560 [Sorghum bicolor]
          Length = 886

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 181/672 (26%), Positives = 326/672 (48%), Gaps = 64/672 (9%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +  ++  G  + A  + + +     V +NLL+    +     +A+ +   M+  G K   
Sbjct: 90  VASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAGTKPDH 149

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T    L  C     Y  G   H  +   GF  N+++ + LV +Y R G    A  +FDE
Sbjct: 150 FTLPYALKACGELPSYRSGSAFHGLICCNGFESNVFVCNALVAMYSRSGSLEDASLVFDE 209

Query: 171 LPER---NLATWNLMLRAFCELSRPDEVLRMYNKM------KAEGVEPNGLSFCYMVRGC 221
           +  +   ++ +WN ++ A  + S P   L ++++M      KA     + +S   ++  C
Sbjct: 210 ITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIVNILPAC 269

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L + K++HS+ I+ G    + FV NAL+D Y+ CGS+ +A   F+ +   DV+SW
Sbjct: 270 ASLKALPQTKEIHSYAIRNG-TFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFKDVVSW 328

Query: 282 NSIVSIY-------ADYDLIF----------------------------DALELFFRMQL 306
           N++V+ Y       A ++L                              +AL+ F +M L
Sbjct: 329 NAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTFQQMIL 388

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-----------LGFDHGSVHVQSAL 355
               P+  + +  L+  +  G +  G + H Y  K              D   + V +AL
Sbjct: 389 YGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNAL 448

Query: 356 TDMYGKCNVIESSVAVFESAP--GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE--GI 411
            DMY KC   +++  +F S P   R++     ++      G+  DA+++F  M+ +   +
Sbjct: 449 IDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAV 508

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIA-VSCSLMDAYSRCGHIE 469
             +  T+S  L A +  +S  +G  + +H    +   +ES++  V+  L+D YS+CG ++
Sbjct: 509 APNAYTISCILMACAHLSSLRMG--KQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVD 566

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +  VF+ +P  N V +TS+M+GY  +G G+EALD+ + M + G +PD ++FL +L  C+
Sbjct: 567 TARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACS 626

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           HSGMV +G   F+ M+S YG+ A  QHY+C+ID+L R+G LDKA + +Q+ P      +W
Sbjct: 627 HSGMVDQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIW 686

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +CRVH N  +     N L+ ++  +   Y+ +SN Y+    ++   +IR+     
Sbjct: 687 VALLSACRVHSNVELAEYALNKLVSMKAENDGSYTLISNIYATARRWKDVARIRQLMKKS 746

Query: 650 KLTRDIGHSLIE 661
            + +  G S ++
Sbjct: 747 GIKKRPGCSWVQ 758



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 115/514 (22%), Positives = 237/514 (46%), Gaps = 68/514 (13%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYLYD 99
           N++  N  +  + +SG L  A  +FDE+  +   D++++N +++   K  +P+ AL L+ 
Sbjct: 183 NVFVCNALVAMYSRSGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFS 242

Query: 100 EMVSHGIKESASTFSSVLSV------CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153
           EM +   +++ +  S ++S+      C++     +  +IH   +  G   + ++ + L+D
Sbjct: 243 EMTTIVHEKATNERSDIISIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALID 302

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE-------- 205
            Y + G    A+++F+ +  +++ +WN M+  + +  +      ++  M+ E        
Sbjct: 303 TYAKCGSMKDAVNVFNVMEFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVIT 362

Query: 206 ---------------------------GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
                                      G EPN ++   ++  C+    L +G + H++ +
Sbjct: 363 WSAVIAGYAQRGYGQEALDTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSL 422

Query: 239 KLGWVDV-----------NIFVANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIV 285
           K   + +           ++ V NAL+D YS C S   A+  F+ IP  +  V++W  ++
Sbjct: 423 KKCLLSLDNDFGGDGDGEDLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMI 482

Query: 286 SIYADYDLIFDALELFFRM--QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
             YA Y    DAL+LF  M  +     P+  +    L   +   ++  GKQIH YVT+  
Sbjct: 483 GGYAQYGDSNDALKLFSEMISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHH 542

Query: 344 FDHGSVH-VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
               SV+ V + L DMY KC  ++++  VF+S P R+     S+M+     G  K+A+++
Sbjct: 543 EYESSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDI 602

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF---ESNIAVSCSLM 459
           F  M   G   D+++    L A S S   + G   L +   ++S +    S    +C ++
Sbjct: 603 FDKMQKAGFVPDDISFLVLLYACSHSGMVDQG---LDYFDIMRSDYGVIASAQHYAC-VI 658

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
           D  +R G ++ + +  +++P  P+   + ++++ 
Sbjct: 659 DLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSA 692



 Score =  132 bits (331), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 107/458 (23%), Positives = 212/458 (46%), Gaps = 62/458 (13%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           +I  + P C S+  L  +  + SY   N    + +  N  ID + K G +  A  +F+ M
Sbjct: 261 SIVNILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVM 320

Query: 71  PARDMVTYNLLISG---CGKFR--------------------------------HPKQAL 95
             +D+V++N +++G    GKF                                 + ++AL
Sbjct: 321 EFKDVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEAL 380

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR-----VLSLGFGLN------ 144
             + +M+ +G + ++ T  S+LS C++ G  ++G++ H       +LSL           
Sbjct: 381 DTFQQMILYGSEPNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 145 -LYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLATWNLMLRAFCELSRPDEVLRMYNK 201
            L + + L+D+Y +      A  +F+ +P  ERN+ TW +M+  + +    ++ L+++++
Sbjct: 441 DLVVHNALIDMYSKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSE 500

Query: 202 M--KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI-FVANALVDFYS 258
           M  K   V PN  +   ++  C+    L  GKQ+H++V +    + ++ FVAN L+D YS
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYS 560

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            CG +  A+  FD +P  + +SW S++S Y  +    +AL++F +MQ     P   SF+ 
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 620

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVAVFESA 375
            L   S +G V    Q   Y   +  D+G   S    + + D+  +   ++ +    +  
Sbjct: 621 LLYACSHSGMV---DQGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEM 677

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
           P   +E   ++  +LL +  +   VE+  + +++ + +
Sbjct: 678 P---MEPSAAIWVALLSACRVHSNVELAEYALNKLVSM 712



 Score = 95.9 bits (237), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 77/321 (23%), Positives = 151/321 (47%), Gaps = 23/321 (7%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSS-------------NRTIDDF 54
           P   TI +L   C S+  LS  +   +Y      L++ +              N  ID +
Sbjct: 393 PNSVTIISLLSACASLGALSQGMETHAYSLKKCLLSLDNDFGGDGDGEDLVVHNALIDMY 452

Query: 55  VKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVS--HGIKESA 110
            K     +A+ +F+ +P   R++VT+ ++I G  ++     AL L+ EM+S  + +  +A
Sbjct: 453 SKCRSFKAARTIFNSIPRRERNVVTWTVMIGGYAQYGDSNDALKLFSEMISKPYAVAPNA 512

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLY-IGSPLVDLYMRMGPSVRALDLF 168
            T S +L  C++      G QIH  V     +  ++Y + + L+D+Y + G    A ++F
Sbjct: 513 YTISCILMACAHLSSLRMGKQIHAYVTRHHEYESSVYFVANCLIDMYSKCGDVDTARNVF 572

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D +P+RN  +W  M+  +    R  E L +++KM+  G  P+ +SF  ++  CS   ++D
Sbjct: 573 DSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVD 632

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIVS- 286
           +G      +     V  +      ++D  +  G L +A K+   +P++   + W +++S 
Sbjct: 633 QGLDYFDIMRSDYGVIASAQHYACVIDLLARSGRLDKAWKTIQEMPMEPSAAIWVALLSA 692

Query: 287 --IYADYDLIFDALELFFRMQ 305
             ++++ +L   AL     M+
Sbjct: 693 CRVHSNVELAEYALNKLVSMK 713



 Score = 81.3 bits (199), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 68/303 (22%), Positives = 138/303 (45%), Gaps = 8/303 (2%)

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           +   +V  Y ACG+  +A    + +     + WN +V  + +   +  A+ +  RM    
Sbjct: 85  LGTGVVASYLACGATSDALSVLERVVPSPAVWWNLLVRAHIEEGRLDRAIGVSCRMLRAG 144

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P   +    L       +   G   HG +   GF+  +V V +AL  MY +   +E +
Sbjct: 145 TKPDHFTLPYALKACGELPSYRSGSAFHGLICCNGFE-SNVFVCNALVAMYSRSGSLEDA 203

Query: 369 VAVFESAPGRSLE---CCNSLMTSLLHSGNIKDAVEMFGFM---VDEGIGLDEVTLSTTL 422
             VF+    + ++     NS++ + +   N + A+++F  M   V E    +   + + +
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALDLFSEMTTIVHEKATNERSDIISIV 263

Query: 423 KALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
             L   AS   L   + +H  AI++G  ++  V  +L+D Y++CG ++ +  VF  +   
Sbjct: 264 NILPACASLKALPQTKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMKDAVNVFNVMEFK 323

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +VV + +++ GY+++G    A ++ + M +  +  D +T+  V+AG    G  +E    F
Sbjct: 324 DVVSWNAMVTGYTQSGKFGAAFELFKNMRKENIPLDVITWSAVIAGYAQRGYGQEALDTF 383

Query: 542 NSM 544
             M
Sbjct: 384 QQM 386


>gi|356541012|ref|XP_003538978.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g50270-like [Glycine max]
          Length = 560

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 150/499 (30%), Positives = 268/499 (53%), Gaps = 7/499 (1%)

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           L LFD +   N    N M+ A    S P   L  Y K++ +GV+P+  +F  +++  S  
Sbjct: 65  LLLFDTINTPNTRLLNKMIAA---CSHPHISLLCYAKLRQKGVQPDKHTFPLLLKTFSKS 121

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
           +  +    +++ + KLG+ D+++F+ NAL+  ++  G +  A++ FD  P  D ++W ++
Sbjct: 122 IAQNPF-MIYAQIFKLGF-DLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTAL 179

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           ++ Y   D   +AL+ F +M+L  +     +    L  A+  G+  FG+ +HG+  + G 
Sbjct: 180 INGYVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGR 239

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
                +V SAL DMY KC   E +  VF   P R + C   L+   + S   +DA+  F 
Sbjct: 240 VQLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFW 299

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M+ + +  ++ TLS+ L A +   + + G  RL+H     +    N+ +  +L+D Y++
Sbjct: 300 DMLSDNVAPNDFTLSSVLSACAQMGALDQG--RLVHQYIECNKINMNVTLGTALVDMYAK 357

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524
           CG I+ + +VFE +P  NV  +T I+NG + +G    AL++   M++ G+ P++VTF+ V
Sbjct: 358 CGSIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGV 417

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           LA C+H G V+EG+ +F  MK  Y +  +  HY CM+DMLGRAG L+ A++++   P   
Sbjct: 418 LAACSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKP 477

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
              +  +L  +C VH    +G  + N+L+  +P     Y+ ++N Y     +E + Q+R+
Sbjct: 478 SPGVLGALFGACLVHKAFEMGEHIGNLLVNQQPNHSGSYALLANLYKMCQNWEAAAQVRK 537

Query: 645 TALARKLTRDIGHSLIEVN 663
                ++ +  G+S IEV+
Sbjct: 538 LMKGLRVVKAPGYSRIEVD 556



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 108/424 (25%), Positives = 199/424 (46%), Gaps = 13/424 (3%)

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           LFD +   +    N +I+ C    HP  +L  Y ++   G++    TF  +L   S +  
Sbjct: 67  LFDTINTPNTRLLNKMIAACS---HPHISLLCYAKLRQKGVQPDKHTFPLLLKTFSKS-I 122

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
                 I+ ++  LGF L+L+IG+ L+  +   G    A  +FDE P ++   W  ++  
Sbjct: 123 AQNPFMIYAQIFKLGFDLDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALING 182

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           + +   P E L+ + KM+      + ++   ++R  ++    D G+ +H   ++ G V +
Sbjct: 183 YVKNDCPGEALKCFVKMRLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQL 242

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           + +V +AL+D Y  CG   +A K F+ +P  DV+ W  +V+ Y   +   DAL  F+ M 
Sbjct: 243 DGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDML 302

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSVHVQSALTDMYGKCN 363
                P+  +    L+  ++ G +  G+ +H Y+   K+  +   V + +AL DMY KC 
Sbjct: 303 SDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMN---VTLGTALVDMYAKCG 359

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            I+ ++ VFE+ P +++     ++  L   G+   A+ +F  M+  GI  +EVT    L 
Sbjct: 360 SIDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLA 419

Query: 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKI---PS 480
           A S       G  RL          +  +     ++D   R G++E + Q+ + +   PS
Sbjct: 420 ACSHGGFVEEGK-RLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPMKPS 478

Query: 481 PNVV 484
           P V+
Sbjct: 479 PGVL 482



 Score =  149 bits (375), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 172/341 (50%), Gaps = 12/341 (3%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+++  N  I  F  SG + SA+++FDE P +D V +  LI+G  K   P +AL  + +M
Sbjct: 140 LDLFIGNALIPAFANSGFVESARQVFDESPFQDTVAWTALINGYVKNDCPGEALKCFVKM 199

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGP 160
                   A T +S+L   +  G    G  +H   +  G   L+ Y+ S L+D+Y + G 
Sbjct: 200 RLRDRSVDAVTVASILRAAALVGDADFGRWVHGFYVEAGRVQLDGYVFSALMDMYFKCGH 259

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +F+ELP R++  W +++  + + ++  + LR +  M ++ V PN  +   ++  
Sbjct: 260 CEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWDMLSDNVAPNDFTLSSVLSA 319

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    LD+G+ +H + I+   +++N+ +  ALVD Y+ CGS+ EA + F+ +PV +V +
Sbjct: 320 CAQMGALDQGRLVHQY-IECNKINMNVTLGTALVDMYAKCGSIDEALRVFENMPVKNVYT 378

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI----- 335
           W  I++  A +     AL +F  M     +P+  +FV  L   S  G V  GK++     
Sbjct: 379 WTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAACSHGGFVEEGKRLFELMK 438

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           H Y  K   DH        + DM G+   +E +  + ++ P
Sbjct: 439 HAYHLKPEMDH-----YGCMVDMLGRAGYLEDAKQIIDNMP 474



 Score =  112 bits (281), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 66/235 (28%), Positives = 122/235 (51%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           QL+ Y  +  +D + K GH   A K+F+E+P RD+V + +L++G  +    + AL  + +
Sbjct: 241 QLDGYVFSALMDMYFKCGHCEDACKVFNELPHRDVVCWTVLVAGYVQSNKFQDALRAFWD 300

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M+S  +  +  T SSVLS C+  G   +G  +H  +      +N+ +G+ LVD+Y + G 
Sbjct: 301 MLSDNVAPNDFTLSSVLSACAQMGALDQGRLVHQYIECNKINMNVTLGTALVDMYAKCGS 360

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              AL +F+ +P +N+ TW +++            L ++  M   G++PN ++F  ++  
Sbjct: 361 IDEALRVFENMPVKNVYTWTVIINGLAVHGDALGALNIFCCMLKSGIQPNEVTFVGVLAA 420

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           CS G  ++EGK+L   +     +   +     +VD     G L +AK+  D +P+
Sbjct: 421 CSHGGFVEEGKRLFELMKHAYHLKPEMDHYGCMVDMLGRAGYLEDAKQIIDNMPM 475


>gi|297810955|ref|XP_002873361.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297319198|gb|EFH49620.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 849

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 179/697 (25%), Positives = 345/697 (49%), Gaps = 44/697 (6%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHL-NSAKK 65
           P   T   L P C  +    +   + SY  +   + +    N  +  + K G++   A  
Sbjct: 120 PSSVTFAILLPVCVRLGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMYAKFGYIIPDAFT 179

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG- 124
            FD++  +D+V++N +I+G  + +    A   +  M+    + + +T ++VL VC++ G 
Sbjct: 180 AFDDIADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGK 239

Query: 125 --FYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
              Y  G QIH  V+   +   ++++ + LV  Y+R+G    A  LF  +  ++L +WN+
Sbjct: 240 NIAYRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNV 299

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
           ++  +       + L++++ +  +G V  + ++   ++  C+    L  GK++HS++++ 
Sbjct: 300 VIAGYASNHEWLKALQLFHNLVQKGDVSLDSVTILSILPVCAQLTDLTCGKEIHSYILRH 359

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300
            ++  +  V NAL+ FY+  G    A  +F  + + D+ISWN+I+  +AD    F  L L
Sbjct: 360 SYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQFLNL 419

Query: 301 F---FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ--SAL 355
               F   +     +I S ++F       G V   K++HGY  K G  H     +  +AL
Sbjct: 420 LHHLFNEAITLDSVTILSLLKFCTNVQGIGKV---KEVHGYSVKAGLLHNEEEPKLGNAL 476

Query: 356 TDMYGKCNVIESSVAVFES-APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV------- 407
            D Y KC  +E +  +F+  +  R+L   NSL++  ++SG+  DA  +F  M        
Sbjct: 477 LDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQMLFSEMSTTDLTTW 536

Query: 408 -------------DEGIGLDEVTLSTTLKALSVS------ASANLGSCRLLHCCA--IKS 446
                        +E IG+     +  ++  +V+        A L S  L+  C   I  
Sbjct: 537 SLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASLHLVRQCHGYIIR 596

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML 506
           G   +I +  +L+D Y++CG ++ ++ VF+     ++V FT+++ GY+ +G G+EAL + 
Sbjct: 597 GRLGDIRLKGTLLDVYAKCGSLKHAYSVFQSDARRDLVMFTAMVAGYAVHGRGKEALMIF 656

Query: 507 EVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566
             MI   + PD V    +L  C H+G++++G  +++S+++V+G+    + Y+C +D+L R
Sbjct: 657 SHMIDSNIKPDHVFITTLLTACCHAGLIQDGLQIYDSIRAVHGMKPTMEQYACAVDLLAR 716

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQV 626
            G LD A   + Q P   +  +W +LLR+C  +    +G  VAN L++ E  D   +  +
Sbjct: 717 GGRLDDAYSFITQMPVEPNANIWGTLLRACTTYNRMDLGHSVANHLLQAESDDTGNHVLI 776

Query: 627 SNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           SN Y+   ++E  M++R     +++ +  G S +EV+
Sbjct: 777 SNMYAADAKWEGVMELRNLMKKKEMKKPAGCSWLEVD 813



 Score =  174 bits (440), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 142/606 (23%), Positives = 280/606 (46%), Gaps = 68/606 (11%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG----CGK--FRHPKQAL 95
           LN+Y+  R +DD          +K+F +M + D V +N++++G    CG+   R  K A+
Sbjct: 63  LNMYAKCRRMDD---------CQKMFRQMDSVDPVVWNIVLTGLSVSCGRETMRFFK-AM 112

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
           +  DE      K S+ TF+ +L VC   G    G  +H  ++  G   +  +G+ LV +Y
Sbjct: 113 HFADEP-----KPSSVTFAILLPVCVRLGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMY 167

Query: 156 MRMGPSV-RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
            + G  +  A   FD++ ++++ +WN ++  F E     +  R +  M  E  EPN  + 
Sbjct: 168 AKFGYIIPDAFTAFDDIADKDVVSWNAIIAGFSENKMMADAFRSFCLMLKEPTEPNYATI 227

Query: 215 CYMVRGC-SIG--MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271
             ++  C S+G  +    G+Q+HS+V++  W+  ++FV N+LV FY   G + EA   F 
Sbjct: 228 ANVLPVCASMGKNIAYRSGRQIHSYVVQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFT 287

Query: 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRS--FVEFLNFASRTGNV 329
            +   D++SWN +++ YA       AL+LF  + + +   S+ S   +  L   ++  ++
Sbjct: 288 RMGSKDLVSWNVVIAGYASNHEWLKALQLFHNL-VQKGDVSLDSVTILSILPVCAQLTDL 346

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTS 389
             GK+IH Y+ +  +      V +AL   Y +     ++   F     + +   N+++ +
Sbjct: 347 TCGKEIHSYILRHSYLLEDTSVGNALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDA 406

Query: 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF- 448
              S      + +   + +E I LD VT+ + LK    +    +G  + +H  ++K+G  
Sbjct: 407 FADSPKQFQFLNLLHHLFNEAITLDSVTILSLLKF--CTNVQGIGKVKEVHGYSVKAGLL 464

Query: 449 --ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNG-------- 497
             E    +  +L+DAY++CG++E +H++F+ +     +V + S+++GY  +G        
Sbjct: 465 HNEEEPKLGNALLDAYAKCGNVEYAHKIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQML 524

Query: 498 -----------------------MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
                                     EA+ +   +  RG+ P+ VT + +L  C     +
Sbjct: 525 FSEMSTTDLTTWSLMVRIYAESCFPNEAIGVFREIQARGMRPNTVTIMNLLPVCAQLASL 584

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
              +     +  + G   D +    ++D+  + G L  A  +  Q+    D +M+++++ 
Sbjct: 585 HLVRQCHGYI--IRGRLGDIRLKGTLLDVYAKCGSLKHAYSVF-QSDARRDLVMFTAMVA 641

Query: 595 SCRVHG 600
              VHG
Sbjct: 642 GYAVHG 647



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 118/538 (21%), Positives = 245/538 (45%), Gaps = 18/538 (3%)

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G       F  V+  C++    T G  +H  V  LG      +   ++++Y +       
Sbjct: 16  GFGTDHRVFLDVVKACASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAKCRRMDDC 75

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSI 223
             +F ++   +   WN++L     +S   E +R +  M  A+  +P+ ++F  ++  C  
Sbjct: 76  QKMFRQMDSVDPVVWNIVLTGL-SVSCGRETMRFFKAMHFADEPKPSSVTFAILLPVCVR 134

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI-EAKKSFDFIPVDDVISWN 282
                 GK +HS++IK G ++ +  V NALV  Y+  G +I +A  +FD I   DV+SWN
Sbjct: 135 LGDSYNGKSMHSYIIKTG-LEKDTLVGNALVSMYAKFGYIIPDAFTAFDDIADKDVVSWN 193

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG-NVYF--GKQIHGYV 339
           +I++ +++  ++ DA   F  M      P+  +    L   +  G N+ +  G+QIH YV
Sbjct: 194 AIIAGFSENKMMADAFRSFCLMLKEPTEPNYATIANVLPVCASMGKNIAYRSGRQIHSYV 253

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            +  +    V V ++L   Y +   IE + ++F     + L   N ++     +     A
Sbjct: 254 VQRSWLQTHVFVCNSLVSFYLRVGRIEEAASLFTRMGSKDLVSWNVVIAGYASNHEWLKA 313

Query: 400 VEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSC-RLLHCCAIKSGF-ESNIAVSC 456
           +++F  +V +G + LD VT+   L  L V A     +C + +H   ++  +   + +V  
Sbjct: 314 LQLFHNLVQKGDVSLDSVTI---LSILPVCAQLTDLTCGKEIHSYILRHSYLLEDTSVGN 370

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           +L+  Y+R G    ++  F  +   +++ + +I++ ++ +    + L++L  +    +  
Sbjct: 371 ALISFYARFGDTSAAYWAFSLMSMKDIISWNAILDAFADSPKQFQFLNLLHHLFNEAITL 430

Query: 517 DKVTFLCVLAGC-NHSGMVKEGQLVFNSMKS-VYGIDADRQHYSCMIDMLGRAGILDKAE 574
           D VT L +L  C N  G+ K  ++   S+K+ +   + + +  + ++D   + G ++ A 
Sbjct: 431 DSVTILSLLKFCTNVQGIGKVKEVHGYSVKAGLLHNEEEPKLGNALLDAYAKCGNVEYAH 490

Query: 575 ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632
           ++ Q        + ++SLL      G+    +    +  E+   D   +S +   Y+E
Sbjct: 491 KIFQGLSERRTLVTYNSLLSGYVNSGSHDDAQM---LFSEMSTTDLTTWSLMVRIYAE 545



 Score = 47.0 bits (110), Expect = 0.032,   Method: Compositional matrix adjust.
 Identities = 43/161 (26%), Positives = 73/161 (45%), Gaps = 19/161 (11%)

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
           F +  G G D       +KA   ++ + L S R LH C  K G  +   VS S+++ Y++
Sbjct: 11  FRLLSGFGTDHRVFLDVVKA--CASVSELTSGRALHGCVFKLGHIACTEVSKSVLNMYAK 68

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM-IQRGLIPDKVTFLC 523
           C  ++   ++F ++ S + V +  ++ G S +  GRE +   + M       P  VTF  
Sbjct: 69  CRRMDDCQKMFRQMDSVDPVVWNIVLTGLSVS-CGRETMRFFKAMHFADEPKPSSVTFAI 127

Query: 524 VLAGC-----------NHSGMVKEG----QLVFNSMKSVYG 549
           +L  C            HS ++K G     LV N++ S+Y 
Sbjct: 128 LLPVCVRLGDSYNGKSMHSYIIKTGLEKDTLVGNALVSMYA 168


>gi|242091211|ref|XP_002441438.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
 gi|241946723|gb|EES19868.1| hypothetical protein SORBIDRAFT_09g026705 [Sorghum bicolor]
          Length = 771

 Score =  261 bits (668), Expect = 6e-67,   Method: Compositional matrix adjust.
 Identities = 171/625 (27%), Positives = 318/625 (50%), Gaps = 18/625 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC---GKFRHPKQALYLYD 99
           ++++ N  +  +   G    A+++FDEMPARD+V++N L+S     G     K+A+    
Sbjct: 146 DVFAGNTLVTFYAARGRAADARRVFDEMPARDIVSWNSLVSALLTNGMLEDAKRAVV--- 202

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            M+  GI  + ++  SV+  C        G+ +H  VL  G    + +G+ LVD+Y + G
Sbjct: 203 GMMRSGIPVNVASLVSVVPACGTERDEGFGLSVHGLVLKSGLDSVVNLGNALVDMYGKFG 262

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               ++ +F+ + E+N  +WN  L  F      ++VL M+  M    V P  ++   ++ 
Sbjct: 263 DLESSMRVFNGMQEKNEVSWNSALGCFAHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLP 322

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                     GK++H + I+   ++ +IF+AN+L+D Y+  G L +A   F+ I   +V+
Sbjct: 323 ALVDLGYFHLGKEVHGYSIRRA-MESDIFIANSLMDMYAKFGCLEKASAIFENIEGRNVV 381

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWN++++  A      +A  L   MQ   + P+  + V  L   SR  +V  GKQIH + 
Sbjct: 382 SWNAMIANLAQNGAETEAFSLVIEMQKNGECPNSFTLVNLLPACSRVASVKMGKQIHAWS 441

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
                    + V +AL D+Y KC  +  +  +F+ +    +   N+L+     S    ++
Sbjct: 442 IHRSL-MSDLFVSNALIDVYAKCGQLSVAQDIFDRSEKDDVSY-NTLIVGYSQSQCCFES 499

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSC 456
           + +F  M   GI  D V+    L     SA ANL + +    +H   ++    ++  ++ 
Sbjct: 500 LHLFQQMRSAGIEYDAVSFMGCL-----SACANLSAFKQGKEIHGVLVRRLLNTHPFLAN 554

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+D Y++ G +  + ++F +I   +V  + +++ GY  +G    A ++ ++M   G+  
Sbjct: 555 SLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGYGMHGQIDVAFELFDLMKDDGVDY 614

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D V+++ VL+ C+H G+V  G+  F+ M +   I   + HY+CM+D+LGRAG L ++ E+
Sbjct: 615 DHVSYIAVLSACSHGGLVDRGKKYFSQMIA-QNIKPQQMHYACMVDLLGRAGQLSESVEI 673

Query: 577 LQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636
           +   P   +  +W +LL SCR+HG+  + R  A  L EL+P     Y+ + N YSE G +
Sbjct: 674 ITNMPFPANSDVWGALLGSCRIHGDIELARLAAEHLFELKPEHSGYYTLLRNMYSESGMW 733

Query: 637 EVSMQIRETALARKLTRDIGHSLIE 661
             + +I+    +RK+ ++  +S ++
Sbjct: 734 NEANEIKTLMKSRKVQKNPAYSWVQ 758



 Score =  172 bits (435), Expect = 6e-40,   Method: Compositional matrix adjust.
 Identities = 125/430 (29%), Positives = 216/430 (50%), Gaps = 9/430 (2%)

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
           +R  PS R +     L  R+   WN + RA      P E LR+YN M   GV P+  +F 
Sbjct: 51  LRDIPSARLILRHHPLRLRSAFLWNSLSRALASAGLPSEALRVYNCMVRSGVRPDDRTFP 110

Query: 216 YMVRGCSIGMLLD-----EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
           + +   +  ++ +     +G +LH+  ++ G +  ++F  N LV FY+A G   +A++ F
Sbjct: 111 FALHAAAAAVVAEAEHPAKGAELHAAALRRGLLLADVFAGNTLVTFYAARGRAADARRVF 170

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  D++SWNS+VS      ++ DA      M       ++ S V  +       +  
Sbjct: 171 DEMPARDIVSWNSLVSALLTNGMLEDAKRAVVGMMRSGIPVNVASLVSVVPACGTERDEG 230

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
           FG  +HG V K G D   V++ +AL DMYGK   +ESS+ VF     ++    NS +   
Sbjct: 231 FGLSVHGLVLKSGLD-SVVNLGNALVDMYGKFGDLESSMRVFNGMQEKNEVSWNSALGCF 289

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
            H+G  +D +EMF  M +  +    VTLS+ L AL      +LG  + +H  +I+   ES
Sbjct: 290 AHAGFHEDVLEMFRVMSEHEVTPGSVTLSSLLPALVDLGYFHLG--KEVHGYSIRRAMES 347

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           +I ++ SLMD Y++ G +E +  +FE I   NVV + +++   ++NG   EA  ++  M 
Sbjct: 348 DIFIANSLMDMYAKFGCLEKASAIFENIEGRNVVSWNAMIANLAQNGAETEAFSLVIEMQ 407

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
           + G  P+  T + +L  C+    VK G+ + ++      + +D    + +ID+  + G L
Sbjct: 408 KNGECPNSFTLVNLLPACSRVASVKMGKQI-HAWSIHRSLMSDLFVSNALIDVYAKCGQL 466

Query: 571 DKAEELLQQT 580
             A+++  ++
Sbjct: 467 SVAQDIFDRS 476



 Score =  114 bits (286), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 79/305 (25%), Positives = 152/305 (49%), Gaps = 11/305 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  L P C+ +  +     + ++      + +++ SN  ID + K G L+ A+ +
Sbjct: 413 PNSFTLVNLLPACSRVASVKMGKQIHAWSIHRSLMSDLFVSNALIDVYAKCGQLSVAQDI 472

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD    +D V+YN LI G  + +   ++L+L+ +M S GI+  A +F   LS C+N   +
Sbjct: 473 FDR-SEKDDVSYNTLIVGYSQSQCCFESLHLFQQMRSAGIEYDAVSFMGCLSACANLSAF 531

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
            +G +IH  ++      + ++ + L+DLY + G    A  +F+ +  +++A+WN M+  +
Sbjct: 532 KQGKEIHGVLVRRLLNTHPFLANSLLDLYTKGGMLATASKIFNRITRKDVASWNTMILGY 591

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
               + D    +++ MK +GV+ + +S+  ++  CS G L+D GK+  S +I        
Sbjct: 592 GMHGQIDVAFELFDLMKDDGVDYDHVSYIAVLSACSHGGLVDRGKKYFSQMIAQNIKPQQ 651

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPV---DDVISWNSIVS---IYADYDLIFDALEL 300
           +  A  +VD     G L E+ +    +P     DV  W +++    I+ D +L   A E 
Sbjct: 652 MHYA-CMVDLLGRAGQLSESVEIITNMPFPANSDV--WGALLGSCRIHGDIELARLAAEH 708

Query: 301 FFRMQ 305
            F ++
Sbjct: 709 LFELK 713


>gi|147863814|emb|CAN79347.1| hypothetical protein VITISV_019894 [Vitis vinifera]
          Length = 667

 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 152/518 (29%), Positives = 282/518 (54%), Gaps = 18/518 (3%)

Query: 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
           Y + G    A+ LFD   +R+  +WN++L    +  +  E L  + KM+   V P+  ++
Sbjct: 91  YFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFMKMRCSSVRPDNFTY 150

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++  C +G     G+Q+H+ ++K+   D++ F+   L+  Y+  G + +A+K FD +P
Sbjct: 151 AIIIPCCDLGF----GQQVHADIVKVC-SDLDAFIGTNLLRMYAEVGEIGDARKVFDGMP 205

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL---NFASRTGNVYF 331
              +++WN+++S Y+ Y     ++ LF   QL R+  S   +   +    FA+R   V+ 
Sbjct: 206 SRGLVTWNAMISCYSKYGRGDKSIGLF--RQLXREGISADEYTYAIVLNEFAARW-QVFE 262

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
             Q+H  + + GF        +AL ++Y KC  + S+  +FE  P + +     ++   L
Sbjct: 263 AMQVHSLIIERGFCSDRF-TNNALVNLYSKCGYVASASRLFEEIPDQDVVSWTVIIVGFL 321

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF-ES 450
            SG++++A+ +F  M    I  +  T    L A + + +   G  R  H   +K G   +
Sbjct: 322 QSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKG--RHFHGLVLKFGLLGA 379

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           ++ V  +++D YS+CG +  + + F+++P  ++  +  I+ GY++NG G +AL +   M+
Sbjct: 380 DVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKALKLYNEMV 439

Query: 511 ---QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
                G+ P++VTF+ VL  C+H+G++KEG   F  M   + I    +HY+CM+D+LGRA
Sbjct: 440 LLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKEMVDKHLIKPTAEHYTCMVDLLGRA 499

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G+L +AE L+   P   D +MW +LL +C++HG+  + RR A  L   EP + + Y  ++
Sbjct: 500 GLLQEAEALILALPIKPDNVMWGALLGACKLHGDVQMTRRTAEHLYTNEPRNSSNYVLLA 559

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSC 665
           N Y++IGE+  +++IRE   AR + +  G S +E+ +C
Sbjct: 560 NSYTDIGEWGEAVEIREVMEARGVEKTAGCSWVEIGTC 597



 Score =  180 bits (457), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 196/390 (50%), Gaps = 8/390 (2%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           PQ ++ S N  +  + K G ++ A KLFD    RD  ++N+++SGC K     + L  + 
Sbjct: 77  PQPSVVSYNTILSGYFKFGLVSEAIKLFDGTSKRDCHSWNIVLSGCVKNHKLGEGLTHFM 136

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M    ++    T++ ++  C + GF   G Q+H  ++ +   L+ +IG+ L+ +Y  +G
Sbjct: 137 KMRCSSVRPDNFTYAIIIPCC-DLGF---GQQVHADIVKVCSDLDAFIGTNLLRMYAEVG 192

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD +P R L TWN M+  + +  R D+ + ++ ++  EG+  +  ++  ++ 
Sbjct: 193 EIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQLXREGISADEYTYAIVLN 252

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
             +    + E  Q+HS +I+ G+   + F  NALV+ YS CG +  A + F+ IP  DV+
Sbjct: 253 EFAARWQVFEAMQVHSLIIERGFCS-DRFTNNALVNLYSKCGYVASASRLFEEIPDQDVV 311

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SW  I+  +     + +A+ LF++MQL    P+  +F   L   +       G+  HG V
Sbjct: 312 SWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGACADANAFQKGRHFHGLV 371

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G     V V SA+ DMY KC  +  ++  F+  P R +   N ++     +G    A
Sbjct: 372 LKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASWNGIICGYAQNGAGMKA 431

Query: 400 VEMFGFMV---DEGIGLDEVTLSTTLKALS 426
           ++++  MV     GI  +EVT    L A S
Sbjct: 432 LKLYNEMVLLGPSGIAPNEVTFVGVLCACS 461



 Score =  156 bits (394), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 92/369 (24%), Positives = 188/369 (50%), Gaps = 16/369 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+ +     +  + + G +  A+K+FD MP+R +VT+N +IS   K+    +++ L+ ++
Sbjct: 176 LDAFIGTNLLRMYAEVGEIGDARKVFDGMPSRGLVTWNAMISCYSKYGRGDKSIGLFRQL 235

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              GI     T++ VL+  +      E +Q+H  ++  GF  + +  + LV+LY + G  
Sbjct: 236 XREGISADEYTYAIVLNEFAARWQVFEAMQVHSLIIERGFCSDRFTNNALVNLYSKCGYV 295

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  LF+E+P++++ +W +++  F +    +E + ++ +M+   +EPN  +F  ++  C
Sbjct: 296 ASASRLFEEIPDQDVVSWTVIIVGFLQSGHMEEAMWLFYQMQLGDIEPNSFTFGGLLGAC 355

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +      +G+  H  V+K G +  ++ V +A+VD YS CG + +A ++F  +P  D+ SW
Sbjct: 356 ADANAFQKGRHFHGLVLKFGLLGADVVVGSAVVDMYSKCGEMGDALRAFQEMPERDIASW 415

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKR---PSIRSFVEFL-----NFASRTGNVYFGK 333
           N I+  YA       AL+L+  M L       P+  +FV  L     N   + G  YF +
Sbjct: 416 NGIICGYAQNGAGMKALKLYNEMVLLGPSGIAPNEVTFVGVLCACSHNGLLKEGYSYFKE 475

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
            +  ++ K   +H      + + D+ G+  +++ + A+  + P   ++  N +  +LL +
Sbjct: 476 MVDKHLIKPTAEH-----YTCMVDLLGRAGLLQEAEALILALP---IKPDNVMWGALLGA 527

Query: 394 GNIKDAVEM 402
             +   V+M
Sbjct: 528 CKLHGDVQM 536



 Score = 48.1 bits (113), Expect = 0.016,   Method: Compositional matrix adjust.
 Identities = 28/124 (22%), Positives = 65/124 (52%), Gaps = 4/124 (3%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           ++++ + +  ++    +LH   +K+G  +++     L+ AY     +  +H++   +P P
Sbjct: 20  IRSIELYSHGHMYKAPVLHASLVKNGLIAHVYQCNILLQAYINSQALSDAHKLLHFMPQP 79

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +VV + +I++GY + G+  EA+ + +   +R    D  ++  VL+GC  +  + EG   F
Sbjct: 80  SVVSYNTILSGYFKFGLVSEAIKLFDGTSKR----DCHSWNIVLSGCVKNHKLGEGLTHF 135

Query: 542 NSMK 545
             M+
Sbjct: 136 MKMR 139


>gi|302809659|ref|XP_002986522.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
 gi|300145705|gb|EFJ12379.1| hypothetical protein SELMODRAFT_124407 [Selaginella moellendorffii]
          Length = 625

 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 165/616 (26%), Positives = 313/616 (50%), Gaps = 9/616 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHL 60
           ML     P   T + +A +C+    L +  +  S    +   N+   N  +  + +SG L
Sbjct: 1   MLLEGFRPNGVTFSGVASSCSGREELDT--IQASIAASDFHSNVVVKNSLVSAYTRSGDL 58

Query: 61  NSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
            SA+K+FD +  +D++++N ++    +  H ++ L L+ +M    ++  + T++S+L  C
Sbjct: 59  RSARKVFDSIENKDLISWNSMVVAYSQHGHGEEMLELFRKM---DVEPDSITYASILGAC 115

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           S       G ++H RV    F  +  + + L+++Y + G    A  +FD +   + + WN
Sbjct: 116 SAMELLELGKEVHARVSRSRFKSDPALAAALINMYSKCGVLESARRVFDGIQSVDPSPWN 175

Query: 181 LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
            M+    +  R  E L ++ +MKAE V  + +S+  ++  C     L EG ++H H    
Sbjct: 176 AMISGLVQHGRAREALGLFERMKAESVRIDKVSYLTILSACCALEDLHEGIRIHEHASAC 235

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYADYDLIFDALE 299
           G +D ++ V  A+ + YS C  +  A+K FD +    +V+SWNS+++ YA      +ALE
Sbjct: 236 G-MDKDLVVETAVFNMYSKCRQVDLARKMFDGMNEKTNVVSWNSMIAAYAQSGRGREALE 294

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           L+  M+    +P   ++   L   +  G    G +IH  +T+       V + +A+ +MY
Sbjct: 295 LYELMKEEGVQPDDITYAGALGACTSYGGSAKGAEIHSRITESKI-RTDVFLDTAIVNMY 353

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  +E++++ FE    ++    ++++ + +  G  ++A++++  MV EG    E+TL+
Sbjct: 354 AKCGELETAMSYFEKMRRKNAVTWSAMVGAFIQQGYDREALDLYLRMVSEGFQPSEITLA 413

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A S   +   G        A ++  ++ + +  SL++ Y++CG + +++ +F  + 
Sbjct: 414 GALAACSRIGALQEGKAIHSRIQATET-LQNCLFLQNSLLNMYAKCGCLAIANTMFSNLQ 472

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +   + +I+ G++ +G   E L +   M+Q G+ PD VTF CVL  C+H+G++  G+ 
Sbjct: 473 RRDSFSWNTIIVGHAHHGDVDEVLSLHGEMVQDGVDPDYVTFACVLLACSHAGLLDRGRS 532

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F SM   Y I     HY C++D+L RAG   +AE L    P     + W++LL +C++H
Sbjct: 533 HFLSMTGDYCIKPMLDHYECLVDVLSRAGWAREAEALAMAMPFTPRPVTWTTLLGACKLH 592

Query: 600 GNEIIGRRVANILMEL 615
           G    G   A  L+EL
Sbjct: 593 GETKRGVEAARSLLEL 608


>gi|224066771|ref|XP_002302207.1| predicted protein [Populus trichocarpa]
 gi|222843933|gb|EEE81480.1| predicted protein [Populus trichocarpa]
          Length = 709

 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 180/610 (29%), Positives = 295/610 (48%), Gaps = 37/610 (6%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P    +  NR ID + K   L  AK+LFDEMP RD  ++N +I  C +   P++AL  + 
Sbjct: 88  PTPPTFLLNRAIDTYGKCRCLEDAKELFDEMPQRDGGSWNAMIRACLQCVRPEKALSYFG 147

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   G+  +  TFSS L  C +        QIH  ++  GF  N+ +GS LVD+Y + G
Sbjct: 148 DMHKQGVYANEVTFSSALRACGDVLELCLSRQIHGLIVKYGFCGNVIVGSSLVDVYGKCG 207

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               +  +FDE+   N  TWN+++R + E+   +E + M+ KM    + P   +F   + 
Sbjct: 208 AMSESRRIFDEIENPNNVTWNIIVRRYLEVGDENEAVVMFFKMFRAKLRPLSYTFSNALV 267

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS    + EG Q+H    K+ + +  + V ++L+D Y  CG +  A++ FD     D+I
Sbjct: 268 ACSDMRAVKEGMQIHGVATKINFEEEEV-VLSSLIDMYVKCGEIESARRVFDLPGSRDLI 326

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQ-----------------------------LCRKR 310
           SW S+VS YA    + +A ELF  M                              +CR  
Sbjct: 327 SWTSMVSAYAMSGRMREARELFDEMPERNMVSYNALLAGYIRSLQWEEALDFVYLMCRTT 386

Query: 311 PSIR--SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC-NVIES 367
            +I   +F   LN  S   +V  GKQ+HG++ + G+   +V + +AL DMY KC N+  +
Sbjct: 387 ENIDHITFQLMLNVCSGLSDVDMGKQVHGFIYRHGWLSNTV-IGNALLDMYCKCGNLRSA 445

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427
            V   +    R     N L+TS       + A+ +F  M  E     +   +T L A + 
Sbjct: 446 GVWFHQMKQSRDSVSWNVLLTSYARRQMSEQAMSIFREMQWE-TKPHKFIFATLLAACAN 504

Query: 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFT 487
           + + + G  + +H   I++G++ +  ++ +L+D YS+C  +E +  VF +    ++V + 
Sbjct: 505 TFALDQG--KQIHGFMIRNGYDIDTVIAGALLDMYSKCRCLEYALIVFREADKRDLVLWN 562

Query: 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547
           S++ G    G G+ AL +   M + G  PD VTF  +L  C + G V   +  FNSM S 
Sbjct: 563 SMILGCCHLGRGKLALRLFGFMEEEGTKPDNVTFQGILLACVYEGHVDLARQYFNSMSSK 622

Query: 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607
           Y I    +HY C+I++L R G + + E  ++  P      M + ++ +C+ H    +G  
Sbjct: 623 YCIIPRLEHYECIIELLSRYGCMKELENFIKDMPFDPTAPMLTRVVDACKEHQCWRLGEW 682

Query: 608 VANILMELEP 617
            A  L EL P
Sbjct: 683 AAKRLDELSP 692



 Score =  114 bits (284), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 109/419 (26%), Positives = 182/419 (43%), Gaps = 48/419 (11%)

Query: 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           + ++ + CS  + + E +++ S ++         F+ N  +D Y  C  L +AK+ FD +
Sbjct: 60  YAHLFQVCSSSLAIVEARKVESQLLG-ACPTPPTFLLNRAIDTYGKCRCLEDAKELFDEM 118

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY--- 330
           P  D  SWN+++           AL  F  M    K+    + V F +     G+V    
Sbjct: 119 PQRDGGSWNAMIRACLQCVRPEKALSYFGDMH---KQGVYANEVTFSSALRACGDVLELC 175

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
             +QIHG + K GF  G+V V S+L D+YGKC  +  S  +F+     +    N ++   
Sbjct: 176 LSRQIHGLIVKYGF-CGNVIVGSSLVDVYGKCGAMSESRRIFDEIENPNNVTWNIIVRRY 234

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           L  G+  +AV MF  M    +     T S  L A S   +   G    +H  A K  FE 
Sbjct: 235 LEVGDENEAVVMFFKMFRAKLRPLSYTFSNALVACSDMRAVKEGM--QIHGVATKINFEE 292

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
              V  SL+D Y +CG IE + +VF+   S +++ +TS+++ Y+ +G  REA ++ + M 
Sbjct: 293 EEVVLSSLIDMYVKCGEIESARRVFDLPGSRDLISWTSMVSAYAMSGRMREARELFDEMP 352

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEG-------------------QLVFNSMKSVYGID 551
           +R +    V++  +LAG   S   +E                    QL+ N    +  +D
Sbjct: 353 ERNM----VSYNALLAGYIRSLQWEEALDFVYLMCRTTENIDHITFQLMLNVCSGLSDVD 408

Query: 552 ADRQHY---------------SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
             +Q +               + ++DM  + G L  A     Q     D + W+ LL S
Sbjct: 409 MGKQVHGFIYRHGWLSNTVIGNALLDMYCKCGNLRSAGVWFHQMKQSRDSVSWNVLLTS 467


>gi|449484874|ref|XP_004157004.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At5g08490-like [Cucumis sativus]
          Length = 881

 Score =  261 bits (668), Expect = 7e-67,   Method: Compositional matrix adjust.
 Identities = 187/695 (26%), Positives = 338/695 (48%), Gaps = 57/695 (8%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH-LNSAKK 65
           P   TI ++ P C+ +        + S+  +     +    N  I  + KSG     A  
Sbjct: 144 PSAITIASILPVCSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYA 203

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
            F+ +  +D+VT+N +IS   +      AL L+  M+   I+ +  T + +L VC++ G 
Sbjct: 204 AFNSIIHKDVVTWNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGN 263

Query: 126 YTE---GIQIHCRV-LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
                 G +IH  +        ++ + + L++LY+R+G    A  LF  L +R+L +WN 
Sbjct: 264 NVSCRFGKEIHGYIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNT 323

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           ++  +    +  E +  + K+   G +P+ ++   ++  C+    L  GK +H ++++  
Sbjct: 324 LISGYSLNDKWLEAVDHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHP 383

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
            +  +  V NALV FY+ C  +  A  SF  I   D+ISWNS+++ +A++      L L 
Sbjct: 384 ILSEDSTVGNALVSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFLRLL 443

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK---LGFDHGSVHVQSALTDM 358
             M   R +P   + +  +NF          K++H Y  +      D+G   + +AL D 
Sbjct: 444 HLMLRERFKPDHFTILSIINFCITVLGGCKVKEVHCYSVRACLFEADYGPT-ILNALLDA 502

Query: 359 YGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           Y KC +I+ ++ +FES+ G R+L  CNS+++  ++  +  DA+ +F        G+ E  
Sbjct: 503 YSKCGIIDYALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIFS-------GMSETD 555

Query: 418 LSTTLKALSVSASAN---------------------------------LGSCRLLHCC-- 442
           L+T    + V A  N                                 L S RLL  C  
Sbjct: 556 LTTWNLMIRVYAENNCPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELASFRLLKECHG 615

Query: 443 -AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
            + +S FE ++ +  +L+DAY++CG ++ ++++FE     ++V FTS+++GY+ +GMG E
Sbjct: 616 YSFRSRFE-DVYLDGALLDAYAKCGAVDCAYKLFESSSQKDLVMFTSMISGYAIHGMGEE 674

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           AL +   M++ G+ PD V    +L+ C+H+G+V +G  +F+SM+ V  I    +HY+C++
Sbjct: 675 ALKVFTNMLESGVKPDHVVVTSILSACSHTGLVDQGLNIFHSMEEVIHIKPTMEHYACVV 734

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621
           D+L R G +  A   +   P   D  +W +LL +C+ H    +G  VA  L E +  D  
Sbjct: 735 DLLARGGRIKDAYSFVIGMPIQPDANIWGTLLGACKTHHEVELGLVVAEKLFETKADDIG 794

Query: 622 VYSQVSNFYSEIGEFEVSMQ--IRETALARKLTRD 654
            Y  +SN Y+   +++  ++  I  T  ARK+  D
Sbjct: 795 NYVVMSNLYAADAKWDGVLERSIDITNAARKVPLD 829



 Score =  194 bits (493), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 157/648 (24%), Positives = 309/648 (47%), Gaps = 63/648 (9%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNR-TIDDFVKSGHLN 61
           S+   P       +  +C ++  ++    L  Y     ++   S  +  ++ + + G  +
Sbjct: 36  SSGFKPDNHIFAAIFKSCAALFAINVGKALQGYAVKQGEIVCQSVYKGLLNLYARCGAFD 95

Query: 62  SAKKLFDEMPARDMVTYNLLISG-CGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSV 119
              KLF+++  RD+VT+N+++SG C    H  +A+ L+ +M + G +K SA T +S+L V
Sbjct: 96  ECWKLFEQLNRRDVVTWNIILSGYCRSQIHDTKAIRLFVKMHAEGEVKPSAITIASILPV 155

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG-PSVRALDLFDELPERNLAT 178
           CS  G    G  IH  V+  G   +  +G+ L+ +Y + G P   A   F+ +  +++ T
Sbjct: 156 CSRVGKGVVGKSIHSFVMKSGLDRDTLVGNALISMYAKSGQPWYDAYAAFNSIIHKDVVT 215

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIG--MLLDEGKQLHS 235
           WN ++ A  E +   + L++++ M  E +EPN ++   ++  C S G  +    GK++H 
Sbjct: 216 WNTIISALAEKNLMFDALQLFSLMLEEPIEPNYITIACILPVCASFGNNVSCRFGKEIHG 275

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
           ++ +   +  +I V NAL++ Y   G + EA+  F  +   D++SWN+++S Y+  D   
Sbjct: 276 YIHRRTELIEDISVCNALMNLYLRVGQMEEAEILFSHLKQRDLVSWNTLISGYSLNDKWL 335

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
           +A++ F ++      P   + +  L   + + N+  GK IHGY+ +         V +AL
Sbjct: 336 EAVDHFCKLLCLGSDPDSVTLISVLPACAYSQNLRIGKMIHGYILRHPILSEDSTVGNAL 395

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
              Y KCN ++S+   F     + L   NS++ +    GN    + +   M+ E    D 
Sbjct: 396 VSFYTKCNDVKSAFHSFSLISSKDLISWNSVLNAFAEFGNTTQFLRLLHLMLRERFKPDH 455

Query: 416 VTLSTTLK-ALSVSASANLGSCRL--LHCCAIKSG-FESNIAVSC--SLMDAYSRCGHIE 469
            T+ + +   ++V     LG C++  +HC ++++  FE++   +   +L+DAYS+CG I+
Sbjct: 456 FTILSIINFCITV-----LGGCKVKEVHCYSVRACLFEADYGPTILNALLDAYSKCGIID 510

Query: 470 LSHQVFE---------------------KIPSPNVVCFTS-----------IMNGYSRNG 497
            + ++FE                     K P+  +  F+            ++  Y+ N 
Sbjct: 511 YALKIFESSSGKRNLVTCNSMISCYVNCKSPNDALTIFSGMSETDLTTWNLMIRVYAENN 570

Query: 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG---MVKE--GQLVFNSMKSVYGIDA 552
             R+AL +   +  +G+ PD V+ + +L  CN      ++KE  G    +  + VY +D 
Sbjct: 571 CPRDALGLFRRLQIKGMKPDAVSIMSLLPVCNELASFRLLKECHGYSFRSRFEDVY-LDG 629

Query: 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
                  ++D   + G +D A +L + +    D +M++S++    +HG
Sbjct: 630 ------ALLDAYAKCGAVDCAYKLFESS-SQKDLVMFTSMISGYAIHG 670


>gi|225433487|ref|XP_002264838.1| PREDICTED: pentatricopeptide repeat-containing protein At1g06140,
           mitochondrial [Vitis vinifera]
 gi|298205230|emb|CBI17289.3| unnamed protein product [Vitis vinifera]
          Length = 688

 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 158/536 (29%), Positives = 287/536 (53%), Gaps = 11/536 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q++ ++L      +L  G  +   Y+++G    A   F+ +   NL +WN +L +  +  
Sbjct: 33  QLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASKAFNHITFENLHSWNTILASHSKNK 92

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL-HSHVIKLGWVDVNIFV 249
              +VL+++ +M  EG   +  +  + V+ C  G+ L +G +L HS  IKL  ++ + +V
Sbjct: 93  CFYDVLQLFKRMLKEGKLVDSFNLVFAVKAC-FGLSLFQGAKLFHSLAIKLR-LEGDPYV 150

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
           A AL++ Y+  GSL EA K F+ +P+ + + W  ++  + ++   F   ELF RM+  R 
Sbjct: 151 APALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMIKGHLNFSEEFGVFELFSRMR--RS 208

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQ---IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +  FV         GNVY GK+    HG   K  F   +  +Q++L DMY KC  ++
Sbjct: 209 GFELDPFV-VEGLIQACGNVYAGKEGKTFHGLCIKKNFIDSNFFLQTSLVDMYMKCGFLD 267

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            ++ +FE    R +   ++++     +G   +++ MF  M+ + +  + VT ++ +  L+
Sbjct: 268 FALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQMLADSVTPNSVTFASIV--LA 325

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            S+  +L   R +H   I++G E ++    S +D Y++CG I  +++VF +IP  NV  +
Sbjct: 326 CSSLGSLKQGRSVHGYMIRNGVELDVKNYTSFIDMYAKCGCIVTAYRVFCQIPEKNVFSW 385

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           ++++NG+  +G+  EAL++   M     +P+ VTF+ VL+ C+HSG ++EG   F SM  
Sbjct: 386 STMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLSACSHSGRIEEGWSHFKSMSR 445

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGR 606
            YGI    +HY+CM+D+LGRAG +D+A   +   P       W +LL +CR+H    +  
Sbjct: 446 DYGITPVEEHYACMVDLLGRAGKIDEALSFINNMPTEPGASAWGALLGACRIHRRAELAE 505

Query: 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
            VA  L+ LE     VY  +SN Y+++G +E+  + R     + + + +G + IE+
Sbjct: 506 EVAKKLLPLESDQSGVYVMLSNIYADVGMWEMVKKTRLKMCEKGIHKIVGFTSIEI 561



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 101/431 (23%), Positives = 197/431 (45%), Gaps = 12/431 (2%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTI-------DDFVKSGHLNSAKK 65
           I++  PT T +     +  L S  Q N Q+ + + +R++         +++ G L+ A K
Sbjct: 9   ISSRNPTKTLLSLFRFTKTLASNHQLNAQILVNALHRSLLFGPMIFGAYIQLGSLHVASK 68

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV--CSNA 123
            F+ +   ++ ++N +++   K +     L L+  M+  G  +   +F+ V +V  C   
Sbjct: 69  AFNHITFENLHSWNTILASHSKNKCFYDVLQLFKRMLKEG--KLVDSFNLVFAVKACFGL 126

Query: 124 GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLML 183
             +      H   + L    + Y+   L+++Y  +G    A  +F+E+P +N   W +M+
Sbjct: 127 SLFQGAKLFHSLAIKLRLEGDPYVAPALMNVYTELGSLEEAHKVFEEVPLKNSVIWGVMI 186

Query: 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
           +     S    V  ++++M+  G E +      +++ C       EGK  H   IK  ++
Sbjct: 187 KGHLNFSEEFGVFELFSRMRRSGFELDPFVVEGLIQACGNVYAGKEGKTFHGLCIKKNFI 246

Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
           D N F+  +LVD Y  CG L  A K F+ I   DV+ W++I++ +A      +++ +F +
Sbjct: 247 DSNFFLQTSLVDMYMKCGFLDFALKLFEEISYRDVVVWSAIIAGFARNGRALESISMFRQ 306

Query: 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
           M      P+  +F   +   S  G++  G+ +HGY+ + G +   V   ++  DMY KC 
Sbjct: 307 MLADSVTPNSVTFASIVLACSSLGSLKQGRSVHGYMIRNGVEL-DVKNYTSFIDMYAKCG 365

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423
            I ++  VF   P +++   ++++      G   +A+ +F  M       + VT  + L 
Sbjct: 366 CIVTAYRVFCQIPEKNVFSWSTMINGFGMHGLCAEALNLFYEMRSVNQLPNSVTFVSVLS 425

Query: 424 ALSVSASANLG 434
           A S S     G
Sbjct: 426 ACSHSGRIEEG 436


>gi|302798965|ref|XP_002981242.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
 gi|300151296|gb|EFJ17943.1| hypothetical protein SELMODRAFT_113974 [Selaginella moellendorffii]
          Length = 734

 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 168/593 (28%), Positives = 300/593 (50%), Gaps = 16/593 (2%)

Query: 38  PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYL 97
           P+   ++   N  +  + + G +    K+FD MP +++V++N +IS   +  +P+QAL L
Sbjct: 142 PSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNAMISAFVQCDYPEQALEL 201

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           Y  M    ++ +   F+S+L+ C++ G    G  IH R+ SLG   ++ + + L+++Y +
Sbjct: 202 YHRMKRERLEPNGFVFASLLTACASLGNLELGSSIHQRITSLGLQRDIVMENALINMYSK 261

Query: 158 MGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            G    AL++F  L  R++ TW  M+  + +L    E    Y+ M+ + V P   +F  +
Sbjct: 262 CGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGFGSEAFAFYDGMRRDCVSPTSATFVAL 321

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           +  CS    L++GK LH  V   G+  + + V  AL+  YS CGSL +A+  F  +   D
Sbjct: 322 LSACST---LEQGKHLHEEVKAFGFESITV-VETALMFMYSRCGSLEDAEFLFAKMQQKD 377

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            +SW+++V+ +A +     AL LF +M L   + S+ +F   L   S   +    K I  
Sbjct: 378 YVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCSALQACSLKRDSRLSKTIRE 437

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397
            +   G D     +++ L   Y KC  +E +  +F+    R +     ++      G+ K
Sbjct: 438 LIDWSGIDKMD-SIRADLVSAYSKCGDMEEARKIFDRMESRDVLTWTVMIKGYAQQGDSK 496

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC--CAIKSGFESNIAVS 455
            A+E+F  M  EG+  D VT S+ L+A S     NL   R +H    A + G  S+  + 
Sbjct: 497 AALELFHRMKPEGVEPDSVTFSSVLQACS-----NLEDGREVHARILAAQGGKMSDF-LG 550

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
             L++ Y+RCG +  + Q+FE +   + + +++IM   +R+G   + +D   +M+  G++
Sbjct: 551 NGLINMYARCGSMRDARQIFESMDRSSRISWSAIMTLCARHGQHDDIIDTYRLMVNEGVV 610

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           PD VT + +L  C+H+G+  E    F  + S + +    +HY CM+D+L RAG LD+AEE
Sbjct: 611 PDGVTLIAILNSCSHAGLTDEACHYFTWIISDFELPHLDEHYQCMVDLLCRAGRLDEAEE 670

Query: 576 LLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE--PVDFAVYSQV 626
           L+       D +  +++L +C+   +   G R A  +   E     F + SQ+
Sbjct: 671 LISMID-RPDVVTLNTMLAACKNQQDLHRGARTAAQMQSTESCAAPFVLLSQI 722



 Score =  248 bits (634), Expect = 6e-63,   Method: Compositional matrix adjust.
 Identities = 156/549 (28%), Positives = 284/549 (51%), Gaps = 15/549 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G L  AK  FDE+  ++   +NL+ISG  +    ++AL L+ +M    I  +   F
Sbjct: 59  YAKCGCLADAKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKM---DIPPNGFIF 115

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +S L+ C+  G   +G +IH RVL S     ++ + + LV +Y R G  +  + +FD +P
Sbjct: 116 ASALAACAGLGDLEQGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMP 175

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            +NL +WN M+ AF +   P++ L +Y++MK E +EPNG  F  ++  C+    L+ G  
Sbjct: 176 RKNLVSWNAMISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLELGSS 235

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H  +  LG +  +I + NAL++ YS CG + EA + F  +   DV +W S+++ YA   
Sbjct: 236 IHQRITSLG-LQRDIVMENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLG 294

Query: 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQ 352
              +A   +  M+     P+  +FV  L+  S    +  GK +H  V   GF+  +V V+
Sbjct: 295 FGSEAFAFYDGMRRDCVSPTSATFVALLSACS---TLEQGKHLHEEVKAFGFESITV-VE 350

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +AL  MY +C  +E +  +F     +     ++++TS    G+   A+ +F  M+ EG+ 
Sbjct: 351 TALMFMYSRCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQ 410

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           L   T  + L+A S+   + L   + +      SG +   ++   L+ AYS+CG +E + 
Sbjct: 411 LSLPTFCSALQACSLKRDSRLS--KTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEAR 468

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
           ++F+++ S +V+ +T ++ GY++ G  + AL++   M   G+ PD VTF  VL  C++  
Sbjct: 469 KIFDRMESRDVLTWTVMIKGYAQQGDSKAALELFHRMKPEGVEPDSVTFSSVLQACSN-- 526

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +++G+ V   + +  G        + +I+M  R G +  A ++ +        + WS++
Sbjct: 527 -LEDGREVHARILAAQGGKMSDFLGNGLINMYARCGSMRDARQIFESMDRSSR-ISWSAI 584

Query: 593 LRSCRVHGN 601
           +  C  HG 
Sbjct: 585 MTLCARHGQ 593



 Score =  191 bits (484), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 131/500 (26%), Positives = 244/500 (48%), Gaps = 16/500 (3%)

Query: 105 GIKES-ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            +KES  S ++ +L  C +    +EG ++H  +   G+G + Y+   +V +Y + G    
Sbjct: 8   ALKESEVSRYARLLQECCSRRNVSEGRRLHDDLRRSGYGDSSYLRRCVVQMYAKCGCLAD 67

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A   FDE+ ++N   WNLM+  +    +  E L +++KM    + PNG  F   +  C+ 
Sbjct: 68  AKAAFDEIADKNDFVWNLMISGYARSGKNREALELFHKMD---IPPNGFIFASALAACAG 124

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              L++G+++H  V++   +  ++ V N+LV  Y+ CGS++E  K FD +P  +++SWN+
Sbjct: 125 LGDLEQGREIHKRVLESPSIASDVVVQNSLVTMYARCGSVLEGIKIFDAMPRKNLVSWNA 184

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           ++S +   D    ALEL+ RM+  R  P+   F   L   +  GN+  G  IH  +T LG
Sbjct: 185 MISAFVQCDYPEQALELYHRMKRERLEPNGFVFASLLTACASLGNLELGSSIHQRITSLG 244

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                V +++AL +MY KC  ++ ++ VF     R +    S++      G      E F
Sbjct: 245 LQRDIV-MENALINMYSKCGCMDEALEVFSGLATRDVFTWTSMIAGYAQLGF---GSEAF 300

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
            F   +G+  D V+ ++      +SA + L   + LH      GFES   V  +LM  YS
Sbjct: 301 AFY--DGMRRDCVSPTSATFVALLSACSTLEQGKHLHEEVKAFGFESITVVETALMFMYS 358

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           RCG +E +  +F K+   + V +++++  +++ G   +AL +   MI  G+     TF  
Sbjct: 359 RCGSLEDAEFLFAKMQQKDYVSWSAMVTSHAQFGDPGKALTLFRQMILEGMQLSLPTFCS 418

Query: 524 VLAGCNHSGMVKEGQL--VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581
            L  C+   + ++ +L      +    GID      + ++    + G +++A ++  +  
Sbjct: 419 ALQACS---LKRDSRLSKTIRELIDWSGIDKMDSIRADLVSAYSKCGDMEEARKIFDRME 475

Query: 582 GGGDCMMWSSLLRSCRVHGN 601
              D + W+ +++     G+
Sbjct: 476 -SRDVLTWTVMIKGYAQQGD 494


>gi|225462250|ref|XP_002263297.1| PREDICTED: pentatricopeptide repeat-containing protein At1g20230
           [Vitis vinifera]
 gi|297736133|emb|CBI24171.3| unnamed protein product [Vitis vinifera]
          Length = 687

 Score =  261 bits (667), Expect = 8e-67,   Method: Compositional matrix adjust.
 Identities = 167/556 (30%), Positives = 282/556 (50%), Gaps = 37/556 (6%)

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           ++    + +Y   G   RA  LFD++P+ +L TW +++ A  +  R  E ++ YN  + +
Sbjct: 12  HLALKFIKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHK 71

Query: 206 G-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264
             VEP+ L    + + C+    +   K++H   I+ G+   ++ + NAL+D Y  C    
Sbjct: 72  NCVEPDKLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCS-DVLLGNALIDMYGKCRCSE 130

Query: 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS 324
            A+  F+ +P  DVISW S+ S Y +  L+ +AL  F +M L  +RP+  +    L   +
Sbjct: 131 GARLVFEGMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACT 190

Query: 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
              ++  G+++HG+V + G   G+V V SAL +MY  C  I  +  VF+S   R     N
Sbjct: 191 DLKDLKSGREVHGFVVRNGMG-GNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWN 249

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST----------TLKALSV------- 427
            L+T+   +   +  + +FG M+ EG+GL+  + +           T KAL V       
Sbjct: 250 VLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNS 309

Query: 428 -------------SASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
                         A  NL S R    +H    +  F  ++  + +L+  Y++CG +ELS
Sbjct: 310 GFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGDLELS 369

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            +VF  +   + V + +++   S +G G EAL +   M+  G+ P+ VTF  VL+GC+HS
Sbjct: 370 RRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHS 429

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
            +V EG L+F+SM   + ++ D  H+SCM+D+L RAG L++A E +++ P       W +
Sbjct: 430 RLVDEGLLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGA 489

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL  CRV+ N  +GR  AN L E+E  +   Y  +SN       +  + + R+    R +
Sbjct: 490 LLGGCRVYKNVELGRIAANRLFEIESDNPGNYVLLSNILVSAKLWSEASETRKLMRDRGV 549

Query: 652 TRDIGHSLIEV-NSCH 666
           T++ G S I+V N  H
Sbjct: 550 TKNPGCSWIQVRNRVH 565



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 122/496 (24%), Positives = 224/496 (45%), Gaps = 43/496 (8%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKES 109
           I  +  SG L  A+ LFD++P  D+ T+ +LIS   K     +A+  Y++      ++  
Sbjct: 18  IKVYSNSGDLQRARHLFDKIPQPDLPTWTILISALTKHGRSLEAIQYYNDFRHKNCVEPD 77

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
                SV   C++        ++H   +  GF  ++ +G+ L+D+Y +   S  A  +F+
Sbjct: 78  KLLLLSVAKACASLRDVMNAKRVHEDAIRFGFCSDVLLGNALIDMYGKCRCSEGARLVFE 137

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            +P R++ +W  M   +       E L  + KM   G  PN ++   ++  C+    L  
Sbjct: 138 GMPFRDVISWTSMASCYVNCGLLREALGAFRKMGLNGERPNSVTVSSILPACTDLKDLKS 197

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI-- 287
           G+++H  V++ G +  N+FV++ALV+ Y++C S+ +A+  FD +   D +SWN +++   
Sbjct: 198 GREVHGFVVRNG-MGGNVFVSSALVNMYASCLSIRQAQLVFDSMSRRDTVSWNVLITAYF 256

Query: 288 -----------------------YADYDLIF----------DALELFFRMQLCRKRPSIR 314
                                  YA ++ +            ALE+  RMQ    +P+  
Sbjct: 257 LNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQNGRTEKALEVLSRMQNSGFKPNQI 316

Query: 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374
           +    L   +   ++  GKQIHGY+ +  F    +   +AL  MY KC  +E S  VF  
Sbjct: 317 TITSVLPACTNLESLRGGKQIHGYIFRHWF-FQDLTTTTALVFMYAKCGDLELSRRVFSM 375

Query: 375 APGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
              R     N+++ +    GN ++A+ +F  MVD G+  + VT +  L   S S   + G
Sbjct: 376 MTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSGCSHSRLVDEG 435

Query: 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG- 492
              +    +     E +      ++D  SR G +E +++  +K+P  P    + +++ G 
Sbjct: 436 -LLIFDSMSRDHSVEPDADHHSCMVDVLSRAGRLEEAYEFIKKMPIEPTAGAWGALLGGC 494

Query: 493 --YSRNGMGREALDML 506
             Y    +GR A + L
Sbjct: 495 RVYKNVELGRIAANRL 510



 Score =  103 bits (256), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/372 (22%), Positives = 164/372 (44%), Gaps = 52/372 (13%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLIS---GCGKFRHPKQALYLYDEMVSH 104
           N  ID + K      A+ +F+ MP RD++++  + S    CG  R   +AL  + +M  +
Sbjct: 117 NALIDMYGKCRCSEGARLVFEGMPFRDVISWTSMASCYVNCGLLR---EALGAFRKMGLN 173

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
           G + ++ T SS+L  C++      G ++H  V+  G G N+++ S LV++Y       +A
Sbjct: 174 GERPNSVTVSSILPACTDLKDLKSGREVHGFVVRNGMGGNVFVSSALVNMYASCLSIRQA 233

Query: 165 LDLFDELPERNLATWNLMLRAF-----CEL------------------------------ 189
             +FD +  R+  +WN+++ A+     CE                               
Sbjct: 234 QLVFDSMSRRDTVSWNVLITAYFLNKECEKGLSVFGRMMSEGVGLNYASWNAVIGGCMQN 293

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
            R ++ L + ++M+  G +PN ++   ++  C+    L  GKQ+H ++ +  W   ++  
Sbjct: 294 GRTEKALEVLSRMQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFR-HWFFQDLTT 352

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             ALV  Y+ CG L  +++ F  +   D +SWN+++   + +    +AL LF  M     
Sbjct: 353 TTALVFMYAKCGDLELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGV 412

Query: 310 RPSIRSFVEFLNFASRT-----GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
           RP+  +F   L+  S +     G + F      +  +   DH      S + D+  +   
Sbjct: 413 RPNSVTFTGVLSGCSHSRLVDEGLLIFDSMSRDHSVEPDADH-----HSCMVDVLSRAGR 467

Query: 365 IESSVAVFESAP 376
           +E +    +  P
Sbjct: 468 LEEAYEFIKKMP 479



 Score = 64.3 bits (155), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 49/188 (26%), Positives = 91/188 (48%), Gaps = 7/188 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGH 59
           M ++   P   TIT++ P CT++  L     +  Y   +    ++ ++   +  + K G 
Sbjct: 306 MQNSGFKPNQITITSVLPACTNLESLRGGKQIHGYIFRHWFFQDLTTTTALVFMYAKCGD 365

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           L  ++++F  M  RD V++N +I       + ++AL L+ EMV  G++ ++ TF+ VLS 
Sbjct: 366 LELSRRVFSMMTKRDTVSWNTMIIATSMHGNGEEALLLFREMVDSGVRPNSVTFTGVLSG 425

Query: 120 CSNAGFYTEGIQIH---CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERN 175
           CS++    EG+ I     R  S+    + +  S +VD+  R G    A +   ++P E  
Sbjct: 426 CSHSRLVDEGLLIFDSMSRDHSVEPDADHH--SCMVDVLSRAGRLEEAYEFIKKMPIEPT 483

Query: 176 LATWNLML 183
              W  +L
Sbjct: 484 AGAWGALL 491


>gi|115486944|ref|NP_001065959.1| Os12g0109800 [Oryza sativa Japonica Group]
 gi|113648466|dbj|BAF28978.1| Os12g0109800 [Oryza sativa Japonica Group]
          Length = 841

 Score =  261 bits (667), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 166/670 (24%), Positives = 319/670 (47%), Gaps = 12/670 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY------CQPNPQLNIYSSNRTIDDF 54
           M+ +   P   ++ T+   C S+V  SS+ LL +        +     N +  +  +  +
Sbjct: 79  MIRSGFCPNEFSLATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSLLLMY 138

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            K G + +A++ F  +  +D+  +N ++ G         A+     M   G+     T+ 
Sbjct: 139 AKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDRYTYI 198

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S +  CS +  +  G Q+HC V+      N  + + LVD+Y R      A  +F ++ ++
Sbjct: 199 SAVKACSISAQWGLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQK 258

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +  +WN M   F        V      M   G +PN ++F  ++R          G Q+ 
Sbjct: 259 DTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLGLQIF 318

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           +   + G+ D N+ VANA+++    CG L  A   F  +   ++++WN I++ Y  +   
Sbjct: 319 ALAYRHGYTD-NVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLFSHS 377

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            DA+ LF  +    +RP   ++   L+           +QIH  + K GF        S 
Sbjct: 378 EDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQFVSTSL 437

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG-FMVDEGIGL 413
           +         ++SS+ + E +    L    +++++ L  G   + + +F  F  D     
Sbjct: 438 IKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRGDSTNKP 497

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           DE  L+T L A   + +A +  CR +H   +K+G  ++  V+ +++DAY++CG I  +  
Sbjct: 498 DEFILATVLNA--CANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGEITSAES 555

Query: 474 VFEKIPSP--NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            F  + S   + + + +++  Y+ +G+  EAL++ E M +  L P   TF+ +L+ C+H 
Sbjct: 556 AFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAILSACSHL 615

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V++G+L F++M S YG+   R +Y+C++D+L R G+LD+A+ ++   P      +W S
Sbjct: 616 GLVEQGKLAFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWRS 675

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           L+  CR+HGN+ +G   A  ++ + P     Y  +SN Y++ GE++ + + R   +   L
Sbjct: 676 LVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLSNVYADDGEWQSAEETRRRMVQNNL 735

Query: 652 TRDIGHSLIE 661
            +  G+  +E
Sbjct: 736 QKVHGYVALE 745



 Score =  147 bits (371), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/563 (23%), Positives = 248/563 (44%), Gaps = 29/563 (5%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G L+SA K+FDEMP R++V++  ++S   +   P      +  M+  G   +  + 
Sbjct: 32  YARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMIRSGFCPNEFSL 91

Query: 114 SSVLSVCSNAGFYTE-----GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +++L+ C +   ++       + +H   +  G   N ++GS L+ +Y + G    A   F
Sbjct: 92  ATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAAQRAF 151

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
             +  ++L  WN ML  +         +     M   G+ P+  ++   V+ CSI     
Sbjct: 152 AHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDRYTYISAVKACSISAQWG 211

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G+QLH  VI    ++ N  V N+LVD Y        A   F  I   D +SWN++ S +
Sbjct: 212 LGRQLHCLVIH-SMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQKDTVSWNTMFSGF 270

Query: 289 A-DYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           A D D   D     + + + R   +P+  +F   L  +    N   G QI     + G+ 
Sbjct: 271 AHDED---DKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLGLQIFALAYRHGYT 327

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
             +V V +A+ +M  +C +++ +   F S   R++   N ++       + +DA+ +F  
Sbjct: 328 -DNVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLFSHSEDAMRLFRS 386

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           +V  G   DE T S  L A   +  A       +H   +K GF S   VS SL+ A +  
Sbjct: 387 LVCIGERPDEFTYSAVLSAFQEAHGAR--DHEQIHAIILKQGFASCQFVSTSLIKANAAA 444

Query: 466 -GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG---LIPDKVTF 521
            G ++ S ++ E      +V + +I++ + ++G+  E + +  +   RG     PD+   
Sbjct: 445 FGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLF--RGDSTNKPDEFIL 502

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY---SCMIDMLGRAGILDKAEELLQ 578
             VL  C ++ +++  + +     S+        H+   S ++D   + G +  AE    
Sbjct: 503 ATVLNACANAALIRHCRCI----HSLVLKTGHSNHFCVASAVVDAYAKCGEITSAESAFT 558

Query: 579 Q-TPGGGDCMMWSSLLRSCRVHG 600
             +    D +M++++L +   HG
Sbjct: 559 AVSSATNDAIMYNTMLTAYANHG 581



 Score = 45.1 bits (105), Expect = 0.14,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 13/207 (6%)

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y+R G ++ + +VF+++P  N+V +T++++  +RNG           MI+ G  P++ + 
Sbjct: 32  YARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMIRSGFCPNEFSL 91

Query: 522 LCVLAGCN----HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
             +L  C+    HS       L  + +    G+D++    S ++ M  + G +  A+   
Sbjct: 92  ATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAAQRAF 151

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
                  D   W+++L     +G    G    + ++ +     A      + Y+ I   +
Sbjct: 152 AHIR-NKDLTCWNAMLEGYVSNG---FGHHAISTVLVMHHSGLA-----PDRYTYISAVK 202

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
                 +  L R+L   + HS++E N+
Sbjct: 203 ACSISAQWGLGRQLHCLVIHSMLESNT 229


>gi|302796316|ref|XP_002979920.1| hypothetical protein SELMODRAFT_111891 [Selaginella moellendorffii]
 gi|300152147|gb|EFJ18790.1| hypothetical protein SELMODRAFT_111891 [Selaginella moellendorffii]
          Length = 719

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 176/640 (27%), Positives = 314/640 (49%), Gaps = 48/640 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPL-SSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGH 59
           ML   + P   T  +L   CT +  L  +SL+ D   Q   Q  +   N  +  + + G 
Sbjct: 119 MLMDGVSPSRITFLSLLSACTKLGSLREASLVHDHIRQSGNQQGLSIQNGVVCMYHRCGS 178

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + +AK +FD MP RD++++  +I+   +      A+ LY  M   G K +  TF + +  
Sbjct: 179 VENAKLVFDAMPRRDVISWTSMIAAYAQSGSCDDAIRLYRRMELEGEKPNKVTFLAAMEA 238

Query: 120 CSNA-GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV-RALDLFDELPERNLA 177
           C+ +     E   +H  V+  G   ++ + + LV++Y +   ++ RA ++FD + +R+  
Sbjct: 239 CAKSLAPEEEAEALHRCVIESGLETDVVVATALVNMYGKSARTLGRAQEIFDGVEKRDNV 298

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            WN ++ A+ +    D  L +  +M+ +  E + +                         
Sbjct: 299 VWNALIAAYAQHGCRDRALDLLEQMQRQSFESDSI------------------------- 333

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFD 296
                      V NAL++ Y  CG   +A + F+  P + +VISWN++++++A       
Sbjct: 334 -----------VRNALMNMYGKCGCAEDALRLFEASPRLQNVISWNTVIAVHAQNGEHQR 382

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           ++ LF RMQL        + +  L   +    +  G+ +    T+ G+ H  V  Q+AL 
Sbjct: 383 SMVLFHRMQLAGVPADRATLLTVLYACTNPAALRTGRIVRELATQRGYHH-EVKFQTALV 441

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH-----SGNIKDAVEMFGFMVDEGI 411
            M+ KC  ++++V VFES   R     N+++ +  +     +G  K++ ++   M  +G 
Sbjct: 442 LMHAKCETLDAAVEVFESMHHRDTPSWNAMVAAYGYHACSLNGRWKESFKLLQQMQVDGA 501

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
             D VTL T L A   +A + +   R +H  A ++G  S++AV+  ++D Y +CG +  +
Sbjct: 502 VPDTVTLVTVLSA--CAAGSAIAKGRAVHRFAAENGLMSDVAVANGVVDFYGKCGCLLEA 559

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             V +K+   + V + S++ GY+++G G E L+    M  RG   +++TF+ VL  C+H 
Sbjct: 560 RAVLDKMAKLDEVTWNSLLAGYAQHGYGVETLEAFTEMQHRGYSANRITFMSVLHACSHV 619

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V EG   F+SM   YG     +H  CMID+LGRAG L +A+ LL + P   + + W S
Sbjct: 620 GLVAEGCKYFSSMIGDYGFQPIEEHCGCMIDLLGRAGHLSEAKMLLARMPFKPNLIAWMS 679

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
           LL SC+VHGN  +GR  A  ++E +P + A +  +S   +
Sbjct: 680 LLGSCKVHGNLELGRDAALKVLEFDPENAAAHMLLSEIVT 719



 Score =  214 bits (545), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 150/558 (26%), Positives = 278/558 (49%), Gaps = 49/558 (8%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ++ + K G L SA  +F  M  RD++++  LI+G  +F H +QAL LY EM+  G+  S 
Sbjct: 69  LNAYGKCGDLESAGAIFRGMEERDLISWTALITGYAQFGHSRQALDLYREMLMDGVSPSR 128

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF S+LS C+  G   E   +H  +   G    L I + +V +Y R G    A  +FD 
Sbjct: 129 ITFLSLLSACTKLGSLREASLVHDHIRQSGNQQGLSIQNGVVCMYHRCGSVENAKLVFDA 188

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML-LDE 229
           +P R++ +W  M+ A+ +    D+ +R+Y +M+ EG +PN ++F   +  C+  +   +E
Sbjct: 189 MPRRDVISWTSMIAAYAQSGSCDDAIRLYRRMELEGEKPNKVTFLAAMEACAKSLAPEEE 248

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFY-SACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            + LH  VI+ G ++ ++ VA ALV+ Y  +  +L  A++ FD +   D + WN++++ Y
Sbjct: 249 AEALHRCVIESG-LETDVVVATALVNMYGKSARTLGRAQEIFDGVEKRDNVVWNALIAAY 307

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           A +     AL+L  +MQ                                   +  F+  S
Sbjct: 308 AQHGCRDRALDLLEQMQ-----------------------------------RQSFESDS 332

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
           + V++AL +MYGKC   E ++ +FE++P  +++   N+++     +G  + ++ +F  M 
Sbjct: 333 I-VRNALMNMYGKCGCAEDALRLFEASPRLQNVISWNTVIAVHAQNGEHQRSMVLFHRMQ 391

Query: 408 DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH 467
             G+  D  TL T L A +  A+   G  R++   A + G+   +    +L+  +++C  
Sbjct: 392 LAGVPADRATLLTVLYACTNPAALRTG--RIVRELATQRGYHHEVKFQTALVLMHAKCET 449

Query: 468 IELSHQVFEKIPSPNVVCFTSIMNGY-----SRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++ + +VFE +   +   + +++  Y     S NG  +E+  +L+ M   G +PD VT +
Sbjct: 450 LDAAVEVFESMHHRDTPSWNAMVAAYGYHACSLNGRWKESFKLLQQMQVDGAVPDTVTLV 509

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C     + +G+ V +   +  G+ +D    + ++D  G+ G L +A  +L +   
Sbjct: 510 TVLSACAAGSAIAKGRAV-HRFAAENGLMSDVAVANGVVDFYGKCGCLLEARAVLDKM-A 567

Query: 583 GGDCMMWSSLLRSCRVHG 600
             D + W+SLL     HG
Sbjct: 568 KLDEVTWNSLLAGYAQHG 585



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 122/543 (22%), Positives = 242/543 (44%), Gaps = 56/543 (10%)

Query: 93  QALYLYDEMVSHGIKES----ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
           QA  L+ ++  HG+  +     +T +S L+       +    +IHC    +       + 
Sbjct: 13  QAFALFQKLHVHGVLPNQIALVATLNSCLADHQVRSVHECAREIHCEHEKI-------VA 65

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           + L++ Y + G    A  +F  + ER+L +W  ++  + +     + L +Y +M  +GV 
Sbjct: 66  TALLNAYGKCGDLESAGAIFRGMEERDLISWTALITGYAQFGHSRQALDLYREMLMDGVS 125

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+ ++F  ++  C+    L E   +H H+ + G     + + N +V  Y  CGS+  AK 
Sbjct: 126 PSRITFLSLLSACTKLGSLREASLVHDHIRQSG-NQQGLSIQNGVVCMYHRCGSVENAKL 184

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRT-G 327
            FD +P  DVISW S+++ YA      DA+ L+ RM+L  ++P+  +F+  +   +++  
Sbjct: 185 VFDAMPRRDVISWTSMIAAYAQSGSCDDAIRLYRRMELEGEKPNKVTFLAAMEACAKSLA 244

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK-CNVIESSVAVFESAPGRSLECCNSL 386
                + +H  V + G +   V V +AL +MYGK    +  +  +F+    R     N+L
Sbjct: 245 PEEEAEALHRCVIESGLETDVV-VATALVNMYGKSARTLGRAQEIFDGVEKRDNVVWNAL 303

Query: 387 MTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKS 446
           + +    G    A+++   M                                      + 
Sbjct: 304 IAAYAQHGCRDRALDLLEQMQ-------------------------------------RQ 326

Query: 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDM 505
            FES+  V  +LM+ Y +CG  E + ++FE  P   NV+ + +++  +++NG  + ++ +
Sbjct: 327 SFESDSIVRNALMNMYGKCGCAEDALRLFEASPRLQNVISWNTVIAVHAQNGEHQRSMVL 386

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565
              M   G+  D+ T L VL  C +   ++ G++V   + +  G   + +  + ++ M  
Sbjct: 387 FHRMQLAGVPADRATLLTVLYACTNPAALRTGRIV-RELATQRGYHHEVKFQTALVLMHA 445

Query: 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI-LMELEPVDFAVYS 624
           +   LD A E+ +      D   W++++ +   H   + GR   +  L++   VD AV  
Sbjct: 446 KCETLDAAVEVFESMH-HRDTPSWNAMVAAYGYHACSLNGRWKESFKLLQQMQVDGAVPD 504

Query: 625 QVS 627
            V+
Sbjct: 505 TVT 507



 Score =  124 bits (312), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 80/343 (23%), Positives = 170/343 (49%), Gaps = 15/343 (4%)

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC----SIGMLLDEGKQLHSHV 237
           M+ A  +     +   ++ K+   GV PN ++    +  C     +  + +  +++H   
Sbjct: 1   MITANAQSGNYTQAFALFQKLHVHGVLPNQIALVATLNSCLADHQVRSVHECAREIHCEH 60

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            K+        VA AL++ Y  CG L  A   F  +   D+ISW ++++ YA +     A
Sbjct: 61  EKI--------VATALLNAYGKCGDLESAGAIFRGMEERDLISWTALITGYAQFGHSRQA 112

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L+L+  M +    PS  +F+  L+  ++ G++     +H ++ + G   G + +Q+ +  
Sbjct: 113 LDLYREMLMDGVSPSRITFLSLLSACTKLGSLREASLVHDHIRQSGNQQG-LSIQNGVVC 171

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY +C  +E++  VF++ P R +    S++ +   SG+  DA+ ++  M  EG   ++VT
Sbjct: 172 MYHRCGSVENAKLVFDAMPRRDVISWTSMIAAYAQSGSCDDAIRLYRRMELEGEKPNKVT 231

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH-IELSHQVFE 476
               ++A + S +        LH C I+SG E+++ V+ +L++ Y +    +  + ++F+
Sbjct: 232 FLAAMEACAKSLAPE-EEAEALHRCVIESGLETDVVVATALVNMYGKSARTLGRAQEIFD 290

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519
            +   + V + +++  Y+++G    ALD+LE M ++    D +
Sbjct: 291 GVEKRDNVVWNALIAAYAQHGCRDRALDLLEQMQRQSFESDSI 333



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 53/211 (25%), Positives = 108/211 (51%), Gaps = 13/211 (6%)

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           ++T+   SGN   A  +F  +   G+  +++ L  TL +            R +H CA +
Sbjct: 1   MITANAQSGNYTQAFALFQKLHVHGVLPNQIALVATLNSCLADHQV-----RSVHECARE 55

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
              E    V+ +L++AY +CG +E +  +F  +   +++ +T+++ GY++ G  R+ALD+
Sbjct: 56  IHCEHEKIVATALLNAYGKCGDLESAGAIFRGMEERDLISWTALITGYAQFGHSRQALDL 115

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC---MID 562
              M+  G+ P ++TFL +L+ C   G ++E  LV + ++       ++Q  S    ++ 
Sbjct: 116 YREMLMDGVSPSRITFLSLLSACTKLGSLREASLVHDHIRQ----SGNQQGLSIQNGVVC 171

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           M  R G ++ A+ +    P   D + W+S++
Sbjct: 172 MYHRCGSVENAKLVFDAMP-RRDVISWTSMI 201


>gi|413933941|gb|AFW68492.1| hypothetical protein ZEAMMB73_143921 [Zea mays]
          Length = 564

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 159/531 (29%), Positives = 279/531 (52%), Gaps = 11/531 (2%)

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
           C   G    G  +H R+L  G    + ++ + L+ +Y     +V A+ +F  +P  NL +
Sbjct: 27  CGRTGDIRRGRALHARLLLTGAAAASTFLANHLITMYSHCADAVSAVRVFGVVPRPNLVS 86

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           W  ++    + S   + L  +  M+   + P   +     R  +       G QLH   I
Sbjct: 87  WTTLVSGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAAALSAPRPGTQLHCIGI 146

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           +LG+ D  +FVA+ L D YS CG L EA + FD +P  D ++W +++  YA  +   +A 
Sbjct: 147 RLGF-DNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAK-NGSLEAA 204

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNV---YFGKQIHGYVTKLGFDHGSVHVQSAL 355
            L FR   C         V F +  S +G +   +FG+ +H  + K GF+  +V V++AL
Sbjct: 205 ILIFRDMKCEGLVGADQHV-FCSALSASGGLKDGWFGRSLHCCIIKAGFELETV-VRNAL 262

Query: 356 TDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
            DMY K   +E++  V    PG  ++    SL+   + +G I++A+E +  +  +G+  +
Sbjct: 263 LDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPN 322

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           E T ++ +K  ++      G+   LH   +K+   S+  V  +L+  Y  CG I LS Q+
Sbjct: 323 EFTFASMIKGCAMHDLLEQGA--QLHAQVLKTNLISDSFVGSTLVYMYGNCGLISLSLQL 380

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F +I     + + +++N Y+++G G  A+   + M   G+ P+ +TF+C+L  C+H+G+V
Sbjct: 381 FNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLV 440

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            EG   F+SMK  +GI+   +HYSC+IDM GRAG LD+AE+ + + P       W SLL 
Sbjct: 441 DEGLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSAYAWCSLLG 500

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645
           +CR+ GN+ +G   A  LM+L+P +  ++  +S  Y+ +G++E    ++++
Sbjct: 501 ACRMQGNKELGEVAAQNLMKLDPNNTGIHISLSGIYTSLGQWEDVKAVKKS 551



 Score =  142 bits (358), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 164/342 (47%), Gaps = 17/342 (4%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           ++ ++   D + K G L+ A ++FD+MP +D VT+  +I G  K    + A+ ++ +M  
Sbjct: 154 LFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTTMIDGYAKNGSLEAAILIFRDMKC 213

Query: 104 HG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            G +      F S LS          G  +HC ++  GF L   + + L+D+Y + G   
Sbjct: 214 EGLVGADQHVFCSALSASGGLKDGWFGRSLHCCIIKAGFELETVVRNALLDMYAKSGDLE 273

Query: 163 RALDLFDELPERNLATWNL-----MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYM 217
            A  +    P      WN+     ++  + E  R +E L  Y ++  +GVEPN  +F  M
Sbjct: 274 NASRVVSIDP----GGWNVVSATSLIDGYVEAGRIEEALETYTELGRQGVEPNEFTFASM 329

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDD 277
           ++GC++  LL++G QLH+ V+K   +  + FV + LV  Y  CG +  + + F+ I    
Sbjct: 330 IKGCAMHDLLEQGAQLHAQVLKTNLIS-DSFVGSTLVYMYGNCGLISLSLQLFNEIGYRT 388

Query: 278 VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHG 337
            I+WN+++++YA +   + A++ F RM     RP+  +FV  L   S  G V  G    G
Sbjct: 389 EIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLTACSHAGLVDEGL---G 445

Query: 338 YVTKLGFDHG---SVHVQSALTDMYGKCNVIESSVAVFESAP 376
           Y   +   HG        S + DMYG+   ++ +       P
Sbjct: 446 YFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMP 487



 Score =  127 bits (320), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 123/494 (24%), Positives = 213/494 (43%), Gaps = 17/494 (3%)

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           SA ++F  +P  ++V++  L+SG  +      AL  +  M    I  +    SS     +
Sbjct: 71  SAVRVFGVVPRPNLVSWTTLVSGLVQNSMHHDALAAFAAMRRAHIAPTQFALSSAARAAA 130

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
                  G Q+HC  + LGF   L++ S L D+Y + G    A  +FD++P+++  TW  
Sbjct: 131 ALSAPRPGTQLHCIGIRLGFDNELFVASNLADMYSKCGLLHEACRVFDQMPQKDAVTWTT 190

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVI 238
           M+  + +    +  + ++  MK EG V  +   FC  +   + G L D   G+ LH  +I
Sbjct: 191 MIDGYAKNGSLEAAILIFRDMKCEGLVGADQHVFCSALS--ASGGLKDGWFGRSLHCCII 248

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDA 297
           K G+ ++   V NAL+D Y+  G L  A +     P   +V+S  S++  Y +   I +A
Sbjct: 249 KAGF-ELETVVRNALLDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEA 307

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           LE +  +      P+  +F   +   +    +  G Q+H  V K      S  V S L  
Sbjct: 308 LETYTELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSF-VGSTLVY 366

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MYG C +I  S+ +F     R+    N+++      G+   A++ F  M   GI  + +T
Sbjct: 367 MYGNCGLISLSLQLFNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHIT 426

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A S +   + G     H      G E        ++D Y R G ++ + +   +
Sbjct: 427 FVCLLTACSHAGLVDEG-LGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISE 485

Query: 478 IP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR--GLIPDKVTFLCVLAGCNHS-GM 533
           +P  P+   + S++      G      ++ EV  Q    L P+       L+G   S G 
Sbjct: 486 MPVKPSAYAWCSLLGACRMQG----NKELGEVAAQNLMKLDPNNTGIHISLSGIYTSLGQ 541

Query: 534 VKEGQLVFNSMKSV 547
            ++ + V  SMK +
Sbjct: 542 WEDVKAVKKSMKDI 555



 Score = 96.7 bits (239), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 62/247 (25%), Positives = 119/247 (48%), Gaps = 2/247 (0%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RDMVTYNLLISGCGKFRHPKQALYLYD 99
           +L     N  +D + KSG L +A ++    P   ++V+   LI G  +    ++AL  Y 
Sbjct: 253 ELETVVRNALLDMYAKSGDLENASRVVSIDPGGWNVVSATSLIDGYVEAGRIEEALETYT 312

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           E+   G++ +  TF+S++  C+      +G Q+H +VL      + ++GS LV +Y   G
Sbjct: 313 ELGRQGVEPNEFTFASMIKGCAMHDLLEQGAQLHAQVLKTNLISDSFVGSTLVYMYGNCG 372

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               +L LF+E+  R    WN ++  + +       ++ +++M + G+ PN ++F  ++ 
Sbjct: 373 LISLSLQLFNEIGYRTEIAWNAVINVYAQHGHGWGAIQAFDRMTSSGIRPNHITFVCLLT 432

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DV 278
            CS   L+DEG      +     ++      + ++D Y   G L EA+K    +PV    
Sbjct: 433 ACSHAGLVDEGLGYFHSMKDAHGIEPKAEHYSCIIDMYGRAGRLDEAEKFISEMPVKPSA 492

Query: 279 ISWNSIV 285
            +W S++
Sbjct: 493 YAWCSLL 499


>gi|38344863|emb|CAE01289.2| OSJNBa0020P07.6 [Oryza sativa Japonica Group]
          Length = 854

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 198/679 (29%), Positives = 349/679 (51%), Gaps = 27/679 (3%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           + L P +++   L    ++    +++L      +P+P +    +N  +  + + G L +A
Sbjct: 58  SALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAV----ANALLTAYARCGRLAAA 113

Query: 64  KKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            ++F  +   A D V++N LIS    FR    AL     M++ G   ++ T  SVL   S
Sbjct: 114 LEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVS 173

Query: 122 N----AGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVRALDLF-DELPER 174
           +    A     G + H   L  G   G   +  + L+ +Y R+G    A  LF    P R
Sbjct: 174 HLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGR 233

Query: 175 -NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ TWN M+    +    DE ++    M A GV P+G++F   +  CS   LLD G+++
Sbjct: 234 GDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREM 293

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDVISWNSIVSIYADY 291
           H++VIK   +  N FVA+ALVD Y+    + +A++ FD +P     +  WN+++  YA  
Sbjct: 294 HAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQA 353

Query: 292 DLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQ-IHGYVTKLGFDHGSV 349
            +  +AL LF RM+      P   +    L   +R+   + GK+ +HGYV K G   G+ 
Sbjct: 354 GMDEEALRLFARMEAEAGFVPCETTMASVLPACARS-EAFAGKEAVHGYVVKRGMA-GNR 411

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-- 407
            VQ+AL DMY +    + +  +F       +   N+L+T  +  G++ DA ++   M   
Sbjct: 412 FVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQL 471

Query: 408 -DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            + G+  + +TL T L   ++ A+   G  + +H  A++   ++++AV  +L+D Y++CG
Sbjct: 472 EEGGVVPNAITLMTLLPGCAILAAPARG--KEIHGYAVRHALDTDVAVGSALVDMYAKCG 529

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVL 525
            + LS  VF+++P  N + +  ++  Y  +G+G EA  + + M   G   P++VTF+  L
Sbjct: 530 CLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAAL 589

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           A C+HSGMV  G  +F++M+  +G++      +C++D+LGRAG LD+A  ++     G  
Sbjct: 590 AACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQ 649

Query: 586 CM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
            +  WS++L +CR+H N  +G      L+ELEP + + Y  + N YS  G++  + ++R 
Sbjct: 650 QVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRS 709

Query: 645 TALARKLTRDIGHSLIEVN 663
               R + ++ G S IEV+
Sbjct: 710 RMRRRGVAKEPGCSWIEVD 728


>gi|297801640|ref|XP_002868704.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
 gi|297314540|gb|EFH44963.1| EMB2744 [Arabidopsis lyrata subsp. lyrata]
          Length = 710

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 161/585 (27%), Positives = 304/585 (51%), Gaps = 14/585 (2%)

Query: 92  KQALYLYDEMVSHGIKESASTF-----SSVLSVCSNAGFYTEGIQIHCRVL---SLGFGL 143
           +Q L  +D++ S   K     F     + +L VC+N+ +   G  IH  ++         
Sbjct: 8   EQRLLKWDKLASLVPKPKKPLFPIDRLNELLKVCANSSYLRTGESIHGHLIVTNQSSRAK 67

Query: 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
           ++Y  + L++LY++ G +VRA  +FD +PERN+ +W  M++ +       EVL+++  M 
Sbjct: 68  DVYQINSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLKLFKSMV 127

Query: 204 -AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
            ++   PN      + + CS    ++EGKQ H   +K G +  + FV N LV  YS C  
Sbjct: 128 FSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMS-HEFVRNTLVYMYSLCSG 186

Query: 263 LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
             EA +  D +P  D+  ++S +S Y +     +  E+  RM          +++  L  
Sbjct: 187 NGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYLSCLRL 246

Query: 323 ASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
            S   ++   +QIH  + +LGF+   V    A+ +MYGKC  +  +  VF++   +++  
Sbjct: 247 CSNLRDLNLARQIHSRMVRLGFN-SEVEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVL 305

Query: 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442
             ++M +     + ++A+ +F  M  + +  +E T + +L   S++  + L    LLH  
Sbjct: 306 NTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLN--SIAELSLLKHGDLLHGL 363

Query: 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREA 502
            +KSG+ +++ V  +L++ Y++ G IE + + F  +   ++V + +++ G+S +G+GRE 
Sbjct: 364 VLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGLGREG 423

Query: 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562
           L+  + M+  G IP+++TF+ VL  C+H G V++G   FN +   + +  D QHY+C++ 
Sbjct: 424 LEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVG 483

Query: 563 MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622
           +L +AG+   AE+ ++  P   D + W +LL +C V  N  +G++VA   +   P D  V
Sbjct: 484 LLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNACYVRRNFRLGKKVAEYAIYKYPNDSGV 543

Query: 623 YSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           Y  +SN +++  E+E   ++R     R + ++ G S I + N  H
Sbjct: 544 YVLLSNIHAKSREWEGVAEVRSLMNKRGVKKEPGVSWIGIRNQTH 588



 Score =  130 bits (327), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 185/391 (47%), Gaps = 3/391 (0%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q +   ++Y  N  I+ +VK G    A+K+FD MP R++V++  ++ G        + L 
Sbjct: 62  QSSRAKDVYQINSLINLYVKCGETVRARKVFDLMPERNVVSWCAMMKGYQNSGFDFEVLK 121

Query: 97  LYDEMV-SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
           L+  MV S   + +    + V   CS++G   EG Q H   L  G   + ++ + LV +Y
Sbjct: 122 LFKSMVFSDESRPNEFVATVVFKSCSSSGRIEEGKQFHGCFLKSGLMSHEFVRNTLVYMY 181

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
                +  A+ + D+LP  +L+ ++  L  + E     E   +  +M  E +  + +++ 
Sbjct: 182 SLCSGNGEAIRVLDDLPYCDLSVFSSALSGYLECGAFKEGAEVLRRMAKEDLVLDNITYL 241

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
             +R CS    L+  +Q+HS +++LG+ +  +  + A+++ Y  CG ++ A++ FD    
Sbjct: 242 SCLRLCSNLRDLNLARQIHSRMVRLGF-NSEVEASGAIINMYGKCGKVLYAQRVFDNTHA 300

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +++   +I+  Y       +AL LF +M      P+  +F   LN  +    +  G  +
Sbjct: 301 QNIVLNTTIMDAYFQDKSFEEALNLFSKMDTKEVPPNEYTFAISLNSIAELSLLKHGDLL 360

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG V K G+    V V +AL +MY K   IE +   F     R +   N+++    H G 
Sbjct: 361 HGLVLKSGY-RNHVMVGNALVNMYAKSGSIEDARKAFSGMTFRDIVTWNTMICGFSHHGL 419

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            ++ +E F  M+  G   + +T    L+A S
Sbjct: 420 GREGLEAFDRMMIAGEIPNRITFIGVLQACS 450



 Score = 79.0 bits (193), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 54/244 (22%), Positives = 119/244 (48%), Gaps = 1/244 (0%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           + +S   I+ + K G +  A+++FD   A+++V    ++    + +  ++AL L+ +M +
Sbjct: 272 VEASGAIINMYGKCGKVLYAQRVFDNTHAQNIVLNTTIMDAYFQDKSFEEALNLFSKMDT 331

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
             +  +  TF+  L+  +       G  +H  VL  G+  ++ +G+ LV++Y + G    
Sbjct: 332 KEVPPNEYTFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIED 391

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A   F  +  R++ TWN M+  F       E L  +++M   G  PN ++F  +++ CS 
Sbjct: 392 ARKAFSGMTFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSH 451

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWN 282
              +++G    + ++K   V  ++     +V   S  G   +A+      P++ DV++W 
Sbjct: 452 VGFVEQGLYYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWR 511

Query: 283 SIVS 286
           ++++
Sbjct: 512 ALLN 515



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 49/183 (26%), Positives = 81/183 (44%), Gaps = 7/183 (3%)

Query: 15  TLAPTCTSIVPLS----SSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T A +  SI  LS      LL     +   + ++   N  ++ + KSG +  A+K F  M
Sbjct: 340 TFAISLNSIAELSLLKHGDLLHGLVLKSGYRNHVMVGNALVNMYAKSGSIEDARKAFSGM 399

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             RD+VT+N +I G       ++ L  +D M+  G   +  TF  VL  CS+ GF  +G+
Sbjct: 400 TFRDIVTWNTMICGFSHHGLGREGLEAFDRMMIAGEIPNRITFIGVLQACSHVGFVEQGL 459

Query: 131 QIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLATWNLMLRAFCE 188
               +++       +L   + +V L  + G    A D     P E ++  W  +L A C 
Sbjct: 460 YYFNQLMKKFNVQPDLQHYTCIVGLLSKAGMFKDAEDFMRTAPIEWDVVAWRALLNA-CY 518

Query: 189 LSR 191
           + R
Sbjct: 519 VRR 521


>gi|449440989|ref|XP_004138266.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
 gi|449524140|ref|XP_004169081.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Cucumis sativus]
          Length = 695

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 145/535 (27%), Positives = 286/535 (53%), Gaps = 6/535 (1%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV--RALDLFDELPERNLATWNLMLRAFCE 188
           Q+H  +L     L+  I   +++    + P     AL +F+ + +   + +N+M+R    
Sbjct: 39  QVHAHLLKTRRLLDPIITEAVLESAALLLPDTIDYALSIFNHIDKPESSAYNVMIRGLAF 98

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
              PD  L ++ KM  + V+ +  +F  +++ CS    L EG+Q+H+ ++K G+   N F
Sbjct: 99  KRSPDNALLLFKKMHEKSVQHDKFTFSSVLKACSRMKALREGEQVHALILKSGF-KSNEF 157

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V N L+  Y+ CG +  A+  FD +P   +++WNS++S Y    L  + ++LF ++   R
Sbjct: 158 VENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKILELR 217

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
                 + +  L    R  N+  G+ I  Y+   G    +  + ++L DMY KC  ++++
Sbjct: 218 IEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNT-LTTSLIDMYAKCGQVDTA 276

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F+    R +   +++++    +   K+A+ +F  M    +  +EVT+ + L + ++ 
Sbjct: 277 RKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCAML 336

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
            +   G  + +H    K   +  + +   L+D Y++CG+I+ S +VF+++   NV  +T+
Sbjct: 337 GAYETG--KWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWTA 394

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ G + NG G+ AL+    M++  + P+ VTF+ VL+ C+H+ +V +G+ +FNSM+  +
Sbjct: 395 LIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRRDF 454

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            I+   +HY CM+D+LGRAG L++A + +   P   + ++W +LL SCR H N  +  + 
Sbjct: 455 DIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLASCRAHKNIEMAEKS 514

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
              +  LEP     Y  +SN Y+ +G  E ++++R     +++ +  G SLIE++
Sbjct: 515 LEHITRLEPAHSGDYILLSNTYALVGRVEDAIRVRSLIKEKEIKKIPGCSLIELD 569



 Score =  182 bits (461), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 119/432 (27%), Positives = 213/432 (49%), Gaps = 4/432 (0%)

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A  +F+ +   +   YN++I G    R P  AL L+ +M    ++    TFSSVL  
Sbjct: 71  IDYALSIFNHIDKPESSAYNVMIRGLAFKRSPDNALLLFKKMHEKSVQHDKFTFSSVLKA 130

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
           CS      EG Q+H  +L  GF  N ++ + L+ +Y   G    A  +FD +PER++  W
Sbjct: 131 CSRMKALREGEQVHALILKSGFKSNEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAW 190

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
           N ML  + +    DEV++++ K+    +E + ++   ++  C     L+ G+ +  +++ 
Sbjct: 191 NSMLSGYTKNGLWDEVVKLFRKILELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVS 250

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
            G +  N  +  +L+D Y+ CG +  A+K FD +   DV++W++++S YA  D   +AL 
Sbjct: 251 KG-LRRNNTLTTSLIDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALN 309

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
           LF  MQ     P+  + V  L   +  G    GK +H Y+ K      +V + + L D Y
Sbjct: 310 LFHEMQKGNVYPNEVTMVSVLYSCAMLGAYETGKWVHFYIKKKKMK-LTVTLGTQLIDFY 368

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            KC  I+ SV VF+    +++    +L+  L ++G  K A+E F  M++  +  ++VT  
Sbjct: 369 AKCGYIDRSVEVFKEMSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFI 428

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
             L A S +   + G   L +        E  I     ++D   R G +E ++Q  + +P
Sbjct: 429 GVLSACSHACLVDQGR-HLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMP 487

Query: 480 -SPNVVCFTSIM 490
             PN V + +++
Sbjct: 488 FPPNAVVWRTLL 499



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 66/237 (27%), Positives = 122/237 (51%), Gaps = 1/237 (0%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           ID + K G +++A+KLFDEM  RD+V ++ +ISG  +    K+AL L+ EM    +  + 
Sbjct: 264 IDMYAKCGQVDTARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNE 323

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T  SVL  C+  G Y  G  +H  +      L + +G+ L+D Y + G   R++++F E
Sbjct: 324 VTMVSVLYSCAMLGAYETGKWVHFYIKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKE 383

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +  +N+ TW  +++           L  ++ M    V+PN ++F  ++  CS   L+D+G
Sbjct: 384 MSFKNVFTWTALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQG 443

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISWNSIVS 286
           + L + + +   ++  I     +VD     G L EA +  D +P   + + W ++++
Sbjct: 444 RHLFNSMRRDFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMPFPPNAVVWRTLLA 500



 Score =  113 bits (283), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 79/335 (23%), Positives = 157/335 (46%), Gaps = 3/335 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N +  N  I  +   G +  A+ +FD MP R +V +N ++SG  K     + + L+ +++
Sbjct: 155 NEFVENTLIQMYANCGQIGVARHVFDGMPERSIVAWNSMLSGYTKNGLWDEVVKLFRKIL 214

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              I+    T  SVL  C        G  I   ++S G   N  + + L+D+Y + G   
Sbjct: 215 ELRIEFDDVTMISVLMACGRLANLEIGELIGEYIVSKGLRRNNTLTTSLIDMYAKCGQVD 274

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFDE+ +R++  W+ M+  + +  R  E L ++++M+   V PN ++   ++  C+
Sbjct: 275 TARKLFDEMDKRDVVAWSAMISGYAQADRCKEALNLFHEMQKGNVYPNEVTMVSVLYSCA 334

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           +    + GK +H + IK   + + + +   L+DFY+ CG +  + + F  +   +V +W 
Sbjct: 335 MLGAYETGKWVHFY-IKKKKMKLTVTLGTQLIDFYAKCGYIDRSVEVFKEMSFKNVFTWT 393

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++   A+      ALE F  M     +P+  +F+  L+  S    V  G+ +   + + 
Sbjct: 394 ALIQGLANNGEGKMALEFFSSMLENDVKPNDVTFIGVLSACSHACLVDQGRHLFNSMRR- 452

Query: 343 GFD-HGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            FD    +     + D+ G+   +E +    ++ P
Sbjct: 453 DFDIEPRIEHYGCMVDILGRAGFLEEAYQFIDNMP 487


>gi|356574473|ref|XP_003555371.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g63370-like [Glycine max]
          Length = 923

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 168/626 (26%), Positives = 314/626 (50%), Gaps = 13/626 (2%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDE--MPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           ++  N  I  + K G L  A+ LFD   M   D V++N +IS         +AL L+  M
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRM 239

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G+  +  TF + L    +  F   G+ IH   L      ++Y+ + L+ +Y + G  
Sbjct: 240 QEVGVASNTYTFVAALQGVEDPSFVKLGMGIHGAALKSNHFADVYVANALIAMYAKCGRM 299

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F  +  R+  +WN +L    +     + L  +  M+    +P+ +S   ++   
Sbjct: 300 EDAERVFASMLCRDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAAS 359

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
                L  GK++H++ I+ G +D N+ + N L+D Y+ C  +     +F+ +   D+ISW
Sbjct: 360 GRSGNLLNGKEVHAYAIRNG-LDSNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISW 418

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
            +I++ YA  +   +A+ LF ++Q+             L   S   +  F ++IHGYV K
Sbjct: 419 TTIIAGYAQNECHLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNFIREIHGYVFK 478

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
              D   + +Q+A+ ++YG+    + +   FES   + +    S++T  +H+G   +A+E
Sbjct: 479 R--DLADIMLQNAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALE 536

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFESNIAVSCSL 458
           +F  +    I  D + + + L     SA+ANL S +    +H   I+ GF     ++ SL
Sbjct: 537 LFYSLKQTNIQPDSIAIISAL-----SATANLSSLKKGKEIHGFLIRKGFFLEGPIASSL 591

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y+ CG +E S ++F  +   +++ +TS++N    +G G EA+ + + M    +IPD 
Sbjct: 592 VDMYACCGTVENSRKMFHSVKQRDLILWTSMINANGMHGCGNEAIALFKKMTDENVIPDH 651

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TFL +L  C+HSG++ EG+  F  MK  Y ++   +HY+CM+D+L R+  L++A + ++
Sbjct: 652 ITFLALLYACSHSGLMVEGKRFFEIMKYGYQLEPWPEHYACMVDLLSRSNSLEEAYQFVR 711

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P      +W +LL +C +H N+ +G   A  L++ +  +   Y+ +SN ++  G +  
Sbjct: 712 SMPIKPSSEVWCALLGACHIHSNKELGELAAKELLQSDTKNSGKYALISNIFAADGRWND 771

Query: 639 SMQIRETALARKLTRDIGHSLIEVNS 664
             ++R       L ++ G S IEV++
Sbjct: 772 VEEVRLRMKGNGLKKNPGCSWIEVDN 797



 Score =  206 bits (524), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 146/578 (25%), Positives = 279/578 (48%), Gaps = 29/578 (5%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYL 97
            L+ + + + +  + K G L  A K+FDEM  R + T+N ++      GK+    +A+ L
Sbjct: 76  HLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFVSSGKYL---EAIEL 132

Query: 98  YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157
           Y EM   G+   A TF SVL  C   G    G +IH   +  GFG  +++ + L+ +Y +
Sbjct: 133 YKEMRVLGVAIDACTFPSVLKACGALGESRLGAEIHGVAVKCGFGEFVFVCNALIAMYGK 192

Query: 158 MGPSVRALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            G    A  LFD   + + +  +WN ++ A     +  E L ++ +M+  GV  N  +F 
Sbjct: 193 CGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRMQEVGVASNTYTFV 252

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
             ++G      +  G  +H   +K      +++VANAL+  Y+ CG + +A++ F  +  
Sbjct: 253 AALQGVEDPSFVKLGMGIHGAALKSNHF-ADVYVANALIAMYAKCGRMEDAERVFASMLC 311

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            D +SWN+++S     +L  DAL  F  MQ   ++P   S +  +  + R+GN+  GK++
Sbjct: 312 RDYVSWNTLLSGLVQNELYRDALNYFRDMQNSAQKPDQVSVLNLIAASGRSGNLLNGKEV 371

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           H Y  + G D  ++ + + L DMY KC  ++     FE    + L    +++     +  
Sbjct: 372 HAYAIRNGLD-SNMQIGNTLIDMYAKCCCVKHMGYAFECMHEKDLISWTTIIAGYAQNEC 430

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVS 455
             +A+ +F  +  +G+ +D + + + L+A S   S N    R +H    K    ++I + 
Sbjct: 431 HLEAINLFRKVQVKGMDVDPMMIGSVLRACSGLKSRNF--IREIHGYVFKRDL-ADIMLQ 487

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
            ++++ Y   GH + + + FE I S ++V +TS++     NG+  EAL++   + Q  + 
Sbjct: 488 NAIVNVYGEVGHRDYARRAFESIRSKDIVSWTSMITCCVHNGLPVEALELFYSLKQTNIQ 547

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY------SCMIDMLGRAGI 569
           PD +  +  L+   +   +K+G       K ++G    +  +      S ++DM    G 
Sbjct: 548 PDSIAIISALSATANLSSLKKG-------KEIHGFLIRKGFFLEGPIASSLVDMYACCGT 600

Query: 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVH--GNEIIG 605
           ++ + ++        D ++W+S++ +  +H  GNE I 
Sbjct: 601 VENSRKMFHSVK-QRDLILWTSMINANGMHGCGNEAIA 637



 Score = 92.4 bits (228), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 69/270 (25%), Positives = 125/270 (46%), Gaps = 21/270 (7%)

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+Q+H  + K    H S  + + L  MY KC  ++ +V VF+    R++   N++M + +
Sbjct: 65  GQQLHARLLK---SHLSAFLATKLLHMYEKCGSLKDAVKVFDEMTERTIFTWNAMMGAFV 121

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
            SG   +A+E++  M   G+ +D  T  + LKA      + LG+   +H  A+K GF   
Sbjct: 122 SSGKYLEAIELYKEMRVLGVAIDACTFPSVLKACGALGESRLGA--EIHGVAVKCGFGEF 179

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKI--PSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
           + V  +L+  Y +CG +  +  +F+ I     + V + SI++ +   G   EAL +   M
Sbjct: 180 VFVCNALIAMYGKCGDLGGARVLFDGIMMEKEDTVSWNSIISAHVTEGKCLEALSLFRRM 239

Query: 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS------CMIDM 563
            + G+  +  TF+  L G      VK G         ++G      H++       +I M
Sbjct: 240 QEVGVASNTYTFVAALQGVEDPSFVKLGM-------GIHGAALKSNHFADVYVANALIAM 292

Query: 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
             + G ++ AE +        D + W++LL
Sbjct: 293 YAKCGRMEDAERVFASML-CRDYVSWNTLL 321


>gi|297816220|ref|XP_002875993.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297321831|gb|EFH52252.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 731

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 177/610 (29%), Positives = 318/610 (52%), Gaps = 20/610 (3%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVT-YNLLISGCGKFRHPKQALYLYDEM 101
           ++YS    +    K G +  A ++FD+MP RD V  +N +I+GC +  +   ++ L+ EM
Sbjct: 116 DVYSWTTLLSASFKLGDIEYAFEVFDKMPERDDVAVWNAMITGCKESGYHGTSIELFREM 175

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
              G++     F++VLS+C   G    G Q+H  V+  GF +   + + L+ +Y      
Sbjct: 176 HKLGVRHDKFGFATVLSMCY-YGSLDFGKQVHSLVIKAGFFVASSVVNALITMYFNCQVV 234

Query: 162 VRALDLFDE--LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
           V A  +F+E  +  R+  T+N+++       R +E L ++ +M   G+ P  L+F  ++ 
Sbjct: 235 VDARLVFEEADVAVRDQVTFNVVIDGLAGFKR-EESLLVFRQMVEAGLRPTDLTFVSVMS 293

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS   +   G Q+H   IK G+ +  + V+N+ +  YS+      A K F+ +   D+I
Sbjct: 294 SCSCETM---GHQVHGLSIKTGYEEYTL-VSNSTMTMYSSFEDFGAAHKVFESLEEKDLI 349

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WN+++S Y   +L   AL L+ RM     +P   +F   L   + + ++   + +   V
Sbjct: 350 TWNTMISGYNQANLGQSALLLYKRMHGIGVKPDEFTFGSLL---ASSLDLDALEMVQACV 406

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            K G     + + +AL   Y K   I  +  +FES+P ++L   N++++   H+G   + 
Sbjct: 407 IKFGLS-SKIEISNALISAYSKHGKITKADLIFESSPKKNLISWNAIISGFYHNGFSFEG 465

Query: 400 VEMFGFMVDEGIGL--DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
           +E F  +++  + +  D  TLS  L      +S  LG     H  A++ G      +  +
Sbjct: 466 LERFSCLLEAEVLIIPDAYTLSILLSICVDISSLMLG--EQTHAYALRHGQFKETLIGNA 523

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-P 516
            ++ YS+CG ++ S  VF ++   + V + S+++ Y+R+G G  A+   + M   G + P
Sbjct: 524 FINMYSQCGTLQKSLAVFHQMSDKDTVSWNSLISAYARHGKGESAVLTYKTMQDEGKVDP 583

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D  T   VL+ C H+G+VKEG  +FNSM   +G+  +  H+SC++D+LGRAG LD+AE L
Sbjct: 584 DAATLSAVLSACGHAGLVKEGLEIFNSMVEFHGLIPNVDHFSCLVDLLGRAGHLDEAESL 643

Query: 577 LQ--QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634
           ++  +   G    +W +L  +C  HG+  +G+ VA +LME E  D +VY Q+SN Y+  G
Sbjct: 644 VKISEKTIGSRVDVWWALFSACAAHGDLKLGKMVARLLMEKEKNDPSVYVQLSNIYAGAG 703

Query: 635 EFEVSMQIRE 644
            ++ + + R+
Sbjct: 704 LWKEAEETRK 713



 Score =  149 bits (377), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 131/520 (25%), Positives = 237/520 (45%), Gaps = 72/520 (13%)

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG--------------PSV------------ 162
           G Q+HC  +  G   + ++ + L+ LY R+G              P V            
Sbjct: 70  GGQVHCYAIRSGLLCHSHVSNTLLSLYARLGNLASLKRKFEEIIEPDVYSWTTLLSASFK 129

Query: 163 -----RALDLFDELPER-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
                 A ++FD++PER ++A WN M+    E       + ++ +M   GV  +   F  
Sbjct: 130 LGDIEYAFEVFDKMPERDDVAVWNAMITGCKESGYHGTSIELFREMHKLGVRHDKFGFAT 189

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF--IP 274
           ++  C  G  LD GKQ+HS VIK G+  V   V NAL+  Y  C  +++A+  F+   + 
Sbjct: 190 VLSMCYYGS-LDFGKQVHSLVIKAGFF-VASSVVNALITMYFNCQVVVDARLVFEEADVA 247

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
           V D +++N ++   A +    ++L +F +M     RP+  +FV  ++  S       G Q
Sbjct: 248 VRDQVTFNVVIDGLAGFKRE-ESLLVFRQMVEAGLRPTDLTFVSVMSSCSCET---MGHQ 303

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +HG   K G++  ++   S +T MY       ++  VFES   + L   N++++    + 
Sbjct: 304 VHGLSIKTGYEEYTLVSNSTMT-MYSSFEDFGAAHKVFESLEEKDLITWNTMISGYNQAN 362

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             + A+ ++  M   G+  DE T  + L     ++S +L +  ++  C IK G  S I +
Sbjct: 363 LGQSALLLYKRMHGIGVKPDEFTFGSLL-----ASSLDLDALEMVQACVIKFGLSSKIEI 417

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG- 513
           S +L+ AYS+ G I  +  +FE  P  N++ + +I++G+  NG   E L+    +++   
Sbjct: 418 SNALISAYSKHGKITKADLIFESSPKKNLISWNAIISGFYHNGFSFEGLERFSCLLEAEV 477

Query: 514 -LIPDKVTFLCVLAGC-----------NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
            +IPD  T   +L+ C            H+  ++ GQ      +++ G        +  I
Sbjct: 478 LIIPDAYTLSILLSICVDISSLMLGEQTHAYALRHGQF----KETLIG--------NAFI 525

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           +M  + G L K+  +  Q     D + W+SL+ +   HG 
Sbjct: 526 NMYSQCGTLQKSLAVFHQMS-DKDTVSWNSLISAYARHGK 564



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 47/185 (25%), Positives = 94/185 (50%), Gaps = 15/185 (8%)

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGL--DEVTLSTTLKALSVSASANLGSCRL--- 438
           N  +T+L  SG  ++A+++F   V   I L  D+ ++S     L+++A+ +L        
Sbjct: 19  NRRLTALTRSGENRNALKLFA-DVHRCITLRPDQYSVS-----LAITAAGHLRDTIFGGQ 72

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           +HC AI+SG   +  VS +L+  Y+R G++    + FE+I  P+V  +T++++   + G 
Sbjct: 73  VHCYAIRSGLLCHSHVSNTLLSLYARLGNLASLKRKFEEIIEPDVYSWTTLLSASFKLGD 132

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
              A ++ + M +R    D   +  ++ GC  SG       +F  M  + G+  D+  ++
Sbjct: 133 IEYAFEVFDKMPER---DDVAVWNAMITGCKESGYHGTSIELFREMHKL-GVRHDKFGFA 188

Query: 559 CMIDM 563
            ++ M
Sbjct: 189 TVLSM 193


>gi|356514095|ref|XP_003525742.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g01580-like [Glycine max]
          Length = 700

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 171/619 (27%), Positives = 306/619 (49%), Gaps = 10/619 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS-- 111
           + +   L  A KLF+E P + +  +N L+          + L L+ +M +  I E     
Sbjct: 46  YARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEGKWVETLSLFHQMNADAITEERPDN 105

Query: 112 -TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T S  L  CS       G  IH  +       ++++GS L++LY + G    A+ +F E
Sbjct: 106 YTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMNDAVKVFTE 165

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGMLLDE 229
            P++++  W  ++  + +   P+  L  +++M   E V P+ ++       C+     + 
Sbjct: 166 YPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACAQLSDFNL 225

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289
           G+ +H  V + G+ D  + +AN++++ Y   GS+  A   F  +P  D+ISW+S+V+ YA
Sbjct: 226 GRSVHGFVKRRGF-DTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSSMVACYA 284

Query: 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
           D     +AL LF  M   R   +  + +  L   + + N+  GK IH      GF+   +
Sbjct: 285 DNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYGFEL-DI 343

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V +AL DMY KC   ++++ +F   P + +     L +     G    ++ +F  M+  
Sbjct: 344 TVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVFCNMLSY 403

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G   D + L   L A S         C  LH    KSGF++N  +  SL++ Y++C  I+
Sbjct: 404 GTRPDAIALVKILAASSELGIVQQALC--LHAFVSKSGFDNNEFIGASLIELYAKCSSID 461

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVLAGC 528
            +++VF+ +   +VV ++SI+  Y  +G G EAL +   M     + P+ VTF+ +L+ C
Sbjct: 462 NANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVSILSAC 521

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           +H+G+++EG  +F+ M + Y +  + +HY  M+D+LGR G LDKA +++ + P      +
Sbjct: 522 SHAGLIEEGIKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMPMQAGPHV 581

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W +LL +CR+H N  IG   A  L  L+P     Y+ +SN Y     +  + ++R     
Sbjct: 582 WGALLGACRIHQNIKIGELAALNLFLLDPNHAGYYTLLSNIYCVDKNWHDAAKLRTLIKE 641

Query: 649 RKLTRDIGHSLIEV-NSCH 666
            +  + +G S++E+ N  H
Sbjct: 642 NRFKKIVGQSMVEIKNEVH 660



 Score =  202 bits (514), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 127/475 (26%), Positives = 246/475 (51%), Gaps = 10/475 (2%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H + L +G   + ++ + L  LY R      A  LF+E P + +  WN +LR++    
Sbjct: 22  QLHSQCLKVGLAHDSFVVTKLNVLYARYASLCHAHKLFEETPCKTVYLWNALLRSYFLEG 81

Query: 191 RPDEVLRMYNKMKAEGV---EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
           +  E L ++++M A+ +    P+  +    ++ CS    L+ GK +H   +K   +D ++
Sbjct: 82  KWVETLSLFHQMNADAITEERPDNYTVSIALKSCSGLQKLELGKMIHG-FLKKKKIDNDM 140

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
           FV +AL++ YS CG + +A K F   P  DV+ W SI++ Y        AL  F RM + 
Sbjct: 141 FVGSALIELYSKCGQMNDAVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVL 200

Query: 308 RK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
            +  P   + V   +  ++  +   G+ +HG+V + GFD   + + +++ ++YGK   I 
Sbjct: 201 EQVSPDPVTLVSAASACAQLSDFNLGRSVHGFVKRRGFD-TKLCLANSILNLYGKTGSIR 259

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           S+  +F   P + +   +S++     +G   +A+ +F  M+D+ I L+ VT+ + L+A  
Sbjct: 260 SAANLFREMPYKDIISWSSMVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRA-- 317

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            ++S+NL   + +H  A+  GFE +I VS +LMD Y +C   + +  +F ++P  +VV +
Sbjct: 318 CASSSNLEEGKHIHKLAVNYGFELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSW 377

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
             + +GY+  GM  ++L +   M+  G  PD +  + +LA  +  G+V++  L  ++  S
Sbjct: 378 AVLFSGYAEIGMAHKSLGVFCNMLSYGTRPDAIALVKILAASSELGIVQQA-LCLHAFVS 436

Query: 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
             G D +    + +I++  +   +D A ++ +      D + WSS++ +   HG 
Sbjct: 437 KSGFDNNEFIGASLIELYAKCSSIDNANKVFKGMR-RKDVVTWSSIIAAYGFHGQ 490



 Score =  161 bits (408), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 115/479 (24%), Positives = 231/479 (48%), Gaps = 6/479 (1%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLNS 62
           T+  P   T++    +C+ +  L    ++  + +     N ++  +  I+ + K G +N 
Sbjct: 99  TEERPDNYTVSIALKSCSGLQKLELGKMIHGFLKKKKIDNDMFVGSALIELYSKCGQMND 158

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESASTFSSVLSVCS 121
           A K+F E P +D+V +  +I+G  +   P+ AL  +  MV    +     T  S  S C+
Sbjct: 159 AVKVFTEYPKQDVVLWTSIITGYEQNGSPELALAFFSRMVVLEQVSPDPVTLVSAASACA 218

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
               +  G  +H  V   GF   L + + +++LY + G    A +LF E+P +++ +W+ 
Sbjct: 219 QLSDFNLGRSVHGFVKRRGFDTKLCLANSILNLYGKTGSIRSAANLFREMPYKDIISWSS 278

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+  + +       L ++N+M  + +E N ++    +R C+    L+EGK +H   +  G
Sbjct: 279 MVACYADNGAETNALNLFNEMIDKRIELNRVTVISALRACASSSNLEEGKHIHKLAVNYG 338

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301
           + +++I V+ AL+D Y  C S   A   F+ +P  DV+SW  + S YA+  +   +L +F
Sbjct: 339 F-ELDITVSTALMDMYMKCFSPKNAIDLFNRMPKKDVVSWAVLFSGYAEIGMAHKSLGVF 397

Query: 302 FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
             M     RP   + V+ L  +S  G V     +H +V+K GFD+    + ++L ++Y K
Sbjct: 398 CNMLSYGTRPDAIALVKILAASSELGIVQQALCLHAFVSKSGFDNNEF-IGASLIELYAK 456

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLST 420
           C+ I+++  VF+    + +   +S++ +    G  ++A+++F  M +   +  ++VT  +
Sbjct: 457 CSSIDNANKVFKGMRRKDVVTWSSIIAAYGFHGQGEEALKLFYQMSNHSDVKPNDVTFVS 516

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
            L A S +     G  ++ H    +     N      ++D   R G ++ +  +  ++P
Sbjct: 517 ILSACSHAGLIEEG-IKMFHVMVNEYQLMPNTEHYGIMVDLLGRMGELDKALDMINEMP 574


>gi|297602077|ref|NP_001052059.2| Os04g0118700 [Oryza sativa Japonica Group]
 gi|222628272|gb|EEE60404.1| hypothetical protein OsJ_13579 [Oryza sativa Japonica Group]
 gi|255675134|dbj|BAF13973.2| Os04g0118700 [Oryza sativa Japonica Group]
          Length = 856

 Score =  261 bits (666), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 198/679 (29%), Positives = 349/679 (51%), Gaps = 27/679 (3%)

Query: 4   TKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSA 63
           + L P +++   L    ++    +++L      +P+P +    +N  +  + + G L +A
Sbjct: 60  SALPPAIKSAAALRDARSARAIHAAALRRGLLHRPSPAV----ANALLTAYARCGRLAAA 115

Query: 64  KKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            ++F  +   A D V++N LIS    FR    AL     M++ G   ++ T  SVL   S
Sbjct: 116 LEVFGSISDSAHDAVSFNSLISALCLFRRWDHALAALRAMLAGGHPLTSFTLVSVLRAVS 175

Query: 122 N----AGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVRALDLF-DELPER 174
           +    A     G + H   L  G   G   +  + L+ +Y R+G    A  LF    P R
Sbjct: 176 HLPAAAAAVRLGREAHAFALKNGLLHGHQRFAFNALLSMYARLGLVADAQRLFAGATPGR 235

Query: 175 -NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            ++ TWN M+    +    DE ++    M A GV P+G++F   +  CS   LLD G+++
Sbjct: 236 GDVVTWNTMVSVLVQSGMFDEAVQTLYDMVALGVRPDGVTFASALPACSRLELLDVGREM 295

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDVISWNSIVSIYADY 291
           H++VIK   +  N FVA+ALVD Y+    + +A++ FD +P     +  WN+++  YA  
Sbjct: 296 HAYVIKDDELAANSFVASALVDMYATHEQVGKARQVFDMVPDSGKQLGMWNAMICGYAQA 355

Query: 292 DLIFDALELFFRMQL-CRKRPSIRSFVEFLNFASRTGNVYFGKQ-IHGYVTKLGFDHGSV 349
            +  +AL LF RM+      P   +    L   +R+   + GK+ +HGYV K G   G+ 
Sbjct: 356 GMDEEALRLFARMEAEAGFVPCETTMASVLPACARS-EAFAGKEAVHGYVVKRGMA-GNR 413

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-- 407
            VQ+AL DMY +    + +  +F       +   N+L+T  +  G++ DA ++   M   
Sbjct: 414 FVQNALMDMYARLGKTDVARRIFAMVDLPDVVSWNTLITGCVVQGHVADAFQLAREMQQL 473

Query: 408 -DEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
            + G+  + +TL T L   ++ A+   G  + +H  A++   ++++AV  +L+D Y++CG
Sbjct: 474 EEGGVVPNAITLMTLLPGCAILAAPARG--KEIHGYAVRHALDTDVAVGSALVDMYAKCG 531

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVL 525
            + LS  VF+++P  N + +  ++  Y  +G+G EA  + + M   G   P++VTF+  L
Sbjct: 532 CLALSRAVFDRLPRRNTITWNVLIMAYGMHGLGGEATVLFDRMTASGEARPNEVTFMAAL 591

Query: 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD 585
           A C+HSGMV  G  +F++M+  +G++      +C++D+LGRAG LD+A  ++     G  
Sbjct: 592 AACSHSGMVDRGLQLFHAMERDHGVEPTPDILACVVDILGRAGRLDEAYAMVTSMETGEQ 651

Query: 586 CM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
            +  WS++L +CR+H N  +G      L+ELEP + + Y  + N YS  G++  + ++R 
Sbjct: 652 QVSAWSTMLGACRLHRNVHLGEIAGERLLELEPEEASHYVLLCNIYSAAGQWTRAAEVRS 711

Query: 645 TALARKLTRDIGHSLIEVN 663
               R + ++ G S IEV+
Sbjct: 712 RMRRRGVAKEPGCSWIEVD 730


>gi|255561305|ref|XP_002521663.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223539054|gb|EEF40650.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 578

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 166/572 (29%), Positives = 299/572 (52%), Gaps = 10/572 (1%)

Query: 93  QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           Q L  Y E+ S  I  +A    SV+  CS +  +  GIQ++  VL  G   +  I +  +
Sbjct: 9   QILKFYKELHSSDIYANAYIIPSVIKACSFSNCHHFGIQLYSIVLKSGLDSDFVICNSFI 68

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
             Y +   +  AL +FD +P ++  +WN ++  + +     +   M+ +M   G+ P   
Sbjct: 69  SFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIVPKPE 128

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
               +V  C     +  G+ +H+ V+  G +   IFV  +LVD+Y   G  + A + FD 
Sbjct: 129 LVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALRVFDQ 188

Query: 273 IPVDDVISWNSIVS---IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           I V +V+SW ++VS      DY++   AL+ F  MQ+   RP+  + +  L   +  G  
Sbjct: 189 IEVKNVVSWTALVSGCSANLDYNM---ALDCFRAMQINGVRPNRVTLIAILPAFAELGCA 245

Query: 330 YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV-IESSVAVFESAPGRSLECCNSLMT 388
             GK+IHGY  + GFD    H  S+L  +Y +    ++ +   FE +  + +   +S++ 
Sbjct: 246 KTGKEIHGYAFRHGFDLDH-HFLSSLIHIYCRSREGLQLAKLTFERSNVKDVVMWSSIIG 304

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
           S   S +  +A+++F +M  +G   + VTL   + A +   S   G     H   +K G 
Sbjct: 305 SYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGT--HGYIVKCGL 362

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             +  +  +L++ YS+CG +  SHQ+F+++   + V +++++  Y  +G G+EAL +   
Sbjct: 363 NFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHE 422

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M  +G+ PD +TFL VL+ CNHSG+VKEGQ +F+++K    +    +HY+C++D+LG++G
Sbjct: 423 MQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSG 482

Query: 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628
            +D A ++L+  P      +WSSL+ +C++HG   I  R+A  L++ EP + A ++ +S 
Sbjct: 483 KVDDAFDILRAMPMKPSTTIWSSLVSACKIHGRLEIAERLAQELIKSEPSNAANHTLLSM 542

Query: 629 FYSEIGEFEVSMQIRETALARKLTRDIGHSLI 660
            Y+E G +     +R     + L++  G S +
Sbjct: 543 IYAESGNWFAVEDVRRLMRVQGLSKCYGFSQV 574



 Score =  145 bits (365), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 90/369 (24%), Positives = 186/369 (50%), Gaps = 5/369 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           I+     +D + KSG    A ++FD++  +++V++  L+SGC        AL  +  M  
Sbjct: 163 IFVLTSLVDWYFKSGDSLMALRVFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQI 222

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
           +G++ +  T  ++L   +  G    G +IH      GF L+ +  S L+ +Y R    ++
Sbjct: 223 NGVRPNRVTLIAILPAFAELGCAKTGKEIHGYAFRHGFDLDHHFLSSLIHIYCRSREGLQ 282

Query: 164 ALDL-FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
              L F+    +++  W+ ++ ++C  +   E L+++  M+A+G EPN ++   ++  C+
Sbjct: 283 LAKLTFERSNVKDVVMWSSIIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACT 342

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L  G   H +++K G ++ + ++ NAL++ YS CG ++ + + F  + + D +SW+
Sbjct: 343 TLTSLKNGYGTHGYIVKCG-LNFDTYIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWS 401

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           ++++ Y  +    +AL LF  MQL    P   +F+  L+  + +G V  G+QI   V K 
Sbjct: 402 TLITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQQIFDNVKKD 461

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G    +V   + L D+ GK   ++ +  +  + P   ++   ++ +SL+ +  I   +E+
Sbjct: 462 GKVSLTVEHYACLVDLLGKSGKVDDAFDILRAMP---MKPSTTIWSSLVSACKIHGRLEI 518

Query: 403 FGFMVDEGI 411
              +  E I
Sbjct: 519 AERLAQELI 527



 Score =  137 bits (345), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 111/455 (24%), Positives = 213/455 (46%), Gaps = 10/455 (2%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + KS    SA K+FD MP +D +++N +I+G  +  +  Q   ++ EM   GI 
Sbjct: 65  NSFISFYAKSSCTESALKVFDTMPLKDPISWNCIINGYFQNGYFTQGFIMFKEMYECGIV 124

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALD 166
                 +SV+SVC   G    G  IH  VL  G     +++ + LVD Y + G S+ AL 
Sbjct: 125 PKPELVASVVSVCVRLGDMKLGRAIHALVLIDGRIAKEIFVLTSLVDWYFKSGDSLMALR 184

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD++  +N+ +W  ++         +  L  +  M+  GV PN ++   ++   +    
Sbjct: 185 VFDQIEVKNVVSWTALVSGCSANLDYNMALDCFRAMQINGVRPNRVTLIAILPAFAELGC 244

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS---LIEAKKSFDFIPVDDVISWNS 283
              GK++H +  + G+ D++    ++L+  Y  C S   L  AK +F+   V DV+ W+S
Sbjct: 245 AKTGKEIHGYAFRHGF-DLDHHFLSSLIHIY--CRSREGLQLAKLTFERSNVKDVVMWSS 301

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           I+  Y       +AL+LF  M+     P+  + +  +   +   ++  G   HGY+ K G
Sbjct: 302 IIGSYCRSADSIEALKLFRWMRADGTEPNSVTLLAVITACTTLTSLKNGYGTHGYIVKCG 361

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
            +  + ++ +AL +MY KC  + +S  +F+    +     ++L+T+    G+ K+A+ +F
Sbjct: 362 LNFDT-YIGNALINMYSKCGCVVASHQIFKEMHIKDSVSWSTLITAYGLHGHGKEALCLF 420

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M  +G+  D +T    L A + S     G  ++             +     L+D   
Sbjct: 421 HEMQLQGVEPDAMTFLAVLSACNHSGLVKEGQ-QIFDNVKKDGKVSLTVEHYACLVDLLG 479

Query: 464 RCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNG 497
           + G ++ +  +   +P  P+   ++S+++    +G
Sbjct: 480 KSGKVDDAFDILRAMPMKPSTTIWSSLVSACKIHG 514



 Score = 74.7 bits (182), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 53/181 (29%), Positives = 89/181 (49%), Gaps = 3/181 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T+  +   CT++  L +      Y  +     + Y  N  I+ + K G + ++ ++
Sbjct: 329 PNSVTLLAVITACTTLTSLKNGYGTHGYIVKCGLNFDTYIGNALINMYSKCGCVVASHQI 388

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F EM  +D V+++ LI+  G   H K+AL L+ EM   G++  A TF +VLS C+++G  
Sbjct: 389 FKEMHIKDSVSWSTLITAYGLHGHGKEALCLFHEMQLQGVEPDAMTFLAVLSACNHSGLV 448

Query: 127 TEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT-WNLMLR 184
            EG QI   V   G   L +   + LVDL  + G    A D+   +P +   T W+ ++ 
Sbjct: 449 KEGQQIFDNVKKDGKVSLTVEHYACLVDLLGKSGKVDDAFDILRAMPMKPSTTIWSSLVS 508

Query: 185 A 185
           A
Sbjct: 509 A 509


>gi|413919600|gb|AFW59532.1| hypothetical protein ZEAMMB73_249815 [Zea mays]
          Length = 886

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 181/672 (26%), Positives = 328/672 (48%), Gaps = 64/672 (9%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +  ++  G    A  + + +     V +NLL+    K  H  +A+ +   M+  G K   
Sbjct: 90  VASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAGTKPDH 149

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            T    L  C     Y  G  +H  +   GF  N+++ + LV +Y R G    A  +FDE
Sbjct: 150 FTLPYALKACGELPSYCCGRALHGLICCNGFESNVFVCNALVAMYSRCGSLEDASLVFDE 209

Query: 171 LPER---NLATWNLMLRAFCELSRPDEVLRMYNKM------KAEGVEPNGLSFCYMVRGC 221
           +  +   ++ +WN ++ A  + S P   L ++++M      KA     + +S   ++  C
Sbjct: 210 ITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIVNILPAC 269

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L + K++HS+ I+ G    + FV NAL+D Y+ CGS+ +A K F+ +   DV+SW
Sbjct: 270 ASLKALPQIKEIHSYAIRNG-TFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFKDVVSW 328

Query: 282 NSIVSIY-------ADYDLI----------------------------FDALELFFRMQL 306
           N++V+ Y       A ++L                              +AL+ F +M L
Sbjct: 329 NAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAFQQMIL 388

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK-----------LGFDHGSVHVQSAL 355
               P+  + +  L+  +  G +  G +IH Y  K              D   + V +AL
Sbjct: 389 DGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNAL 448

Query: 356 TDMYGKCNVIESSVAVFESAP--GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE--GI 411
            DMY KC   +++ ++F+S P   R++     ++      G+  DA+++F  M+ +   +
Sbjct: 449 IDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAV 508

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESNIA-VSCSLMDAYSRCGHIE 469
             +  T+S  L A +  A+  +G  + +H    +   +E ++  V+  L+D YS+CG ++
Sbjct: 509 APNAYTISCILMACAHLAALRMG--KQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVD 566

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            +  VF+ +P  N V +TS+M+GY  +G G+EALD+ + M + G +PD ++FL +L  C+
Sbjct: 567 TARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACS 626

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
           HSGMV +G   F+ M+  Y + A  +HY+C+ID+L R G LDKA + +Q+ P     ++W
Sbjct: 627 HSGMVDQGLNYFDIMRRDYDVVASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIW 686

Query: 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
            +LL +CRVH N  +     N L+ ++  +   Y+ +SN Y+    ++   +IR+     
Sbjct: 687 VALLSACRVHSNVELAEYALNKLVNMKAENDGSYTLISNIYANARRWKDVARIRQLMKKS 746

Query: 650 KLTRDIGHSLIE 661
            + +  G S ++
Sbjct: 747 GIKKRPGCSWVQ 758



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 119/515 (23%), Positives = 235/515 (45%), Gaps = 70/515 (13%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYLYD 99
           N++  N  +  + + G L  A  +FDE+  +   D++++N +++   K  +P+ AL L+ 
Sbjct: 183 NVFVCNALVAMYSRCGSLEDASLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFS 242

Query: 100 EMVSHGIKESASTFSS-------VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
           EM S  + E A+   S       +L  C++     +  +IH   +  G   + ++ + L+
Sbjct: 243 EM-SMIVHEKATNERSDIISIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALI 301

Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR--------------------- 191
           D Y + G    A+ +F+ +  +++ +WN M+  + +                        
Sbjct: 302 DTYAKCGSMNDAVKVFNVMEFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVI 361

Query: 192 --------------PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
                           E L  + +M  +G EPN ++   ++  C+    L +G ++H++ 
Sbjct: 362 TWSAVIAGYAQRGCSQEALDAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYS 421

Query: 238 IKLGWVDV-----------NIFVANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSI 284
           +K   + +           ++ V NAL+D YS C S   A+  FD IP  +  V++W  +
Sbjct: 422 LKKCLLSLDNDFGGDGDGEDLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVM 481

Query: 285 VSIYADYDLIFDALELFFRM--QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +  YA Y    DAL++F  M  +     P+  +    L   +    +  GKQIH YVT+ 
Sbjct: 482 IGGYAQYGDSNDALKIFSEMISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRH 541

Query: 343 GFDHGSVH-VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
                SV+ V + L DMY KC  ++++  VF+S P R+     S+M+     G  K+A++
Sbjct: 542 HEYEPSVYFVANCLIDMYSKCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALD 601

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE---SNIAVSCSL 458
           +F  M   G   D+++    L A S S   + G   L +   ++  ++   S    +C +
Sbjct: 602 IFDKMQKAGFVPDDISFLVLLYACSHSGMVDQG---LNYFDIMRRDYDVVASAEHYAC-V 657

Query: 459 MDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
           +D  +RCG ++ + +  +++P  P+ V + ++++ 
Sbjct: 658 IDLLARCGRLDKAWKTIQEMPMEPSAVIWVALLSA 692



 Score =  136 bits (342), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 110/460 (23%), Positives = 209/460 (45%), Gaps = 66/460 (14%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           +I  + P C S+  L     + SY   N    + +  N  ID + K G +N A K+F+ M
Sbjct: 261 SIVNILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVM 320

Query: 71  PARDMVTYNLLISG---CGKFRHP--------------------------------KQAL 95
             +D+V++N +++G    G F                                   ++AL
Sbjct: 321 EFKDVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEAL 380

Query: 96  YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR-----VLSLGFGLN------ 144
             + +M+  G + ++ T  S+LS C++ G  ++G++IH       +LSL           
Sbjct: 381 DAFQQMILDGSEPNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGE 440

Query: 145 -LYIGSPLVDLYMRMGPSVRALDLFDELP--ERNLATWNLMLRAFCELSRPDEVLRMYNK 201
            L + + L+D+Y +      A  +FD +P  ERN+ TW +M+  + +    ++ L+++++
Sbjct: 441 DLMVYNALIDMYSKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSE 500

Query: 202 M--KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI-FVANALVDFYS 258
           M  K   V PN  +   ++  C+    L  GKQ+H++V +    + ++ FVAN L+D YS
Sbjct: 501 MISKPYAVAPNAYTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYS 560

Query: 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE 318
            CG +  A+  FD +P  + +SW S++S Y  +    +AL++F +MQ     P   SF+ 
Sbjct: 561 KCGDVDTARNVFDSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLV 620

Query: 319 FLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            L   S +G V     YF      Y      +H      + + D+  +C  ++ +    +
Sbjct: 621 LLYACSHSGMVDQGLNYFDIMRRDYDVVASAEH-----YACVIDLLARCGRLDKAWKTIQ 675

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413
             P   +E    +  +LL +  +   VE+  + +++ + +
Sbjct: 676 EMP---MEPSAVIWVALLSACRVHSNVELAEYALNKLVNM 712



 Score =  104 bits (260), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/326 (25%), Positives = 159/326 (48%), Gaps = 33/326 (10%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSS-------------NRTIDDF 54
           P   TI +L   C S+  LS  + + +Y      L++ +              N  ID +
Sbjct: 393 PNSVTIISLLSACASLGALSQGMEIHAYSLKKCLLSLDNDFGGDGDGEDLMVYNALIDMY 452

Query: 55  VKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVS--HGIKESA 110
            K     +A+ +FD +P   R++VT+ ++I G  ++     AL ++ EM+S  + +  +A
Sbjct: 453 SKCRSFKAARSIFDSIPRRERNVVTWTVMIGGYAQYGDSNDALKIFSEMISKPYAVAPNA 512

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLY-IGSPLVDLYMRMGPSVRALDLF 168
            T S +L  C++      G QIH  V     +  ++Y + + L+D+Y + G    A ++F
Sbjct: 513 YTISCILMACAHLAALRMGKQIHAYVTRHHEYEPSVYFVANCLIDMYSKCGDVDTARNVF 572

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D +P+RN  +W  M+  +    R  E L +++KM+  G  P+ +SF  ++  CS   ++D
Sbjct: 573 DSMPKRNEVSWTSMMSGYGMHGRGKEALDIFDKMQKAGFVPDDISFLVLLYACSHSGMVD 632

Query: 229 EGKQLHSHVIKLGWVDVNIFVANA-----LVDFYSACGSLIEAKKSFDFIPVD-DVISWN 282
           +G  L+   I     DV   VA+A     ++D  + CG L +A K+   +P++   + W 
Sbjct: 633 QG--LNYFDIMRRDYDV---VASAEHYACVIDLLARCGRLDKAWKTIQEMPMEPSAVIWV 687

Query: 283 SIVS---IYADYDLIFDALELFFRMQ 305
           +++S   ++++ +L   AL     M+
Sbjct: 688 ALLSACRVHSNVELAEYALNKLVNMK 713



 Score = 87.4 bits (215), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/303 (23%), Positives = 140/303 (46%), Gaps = 8/303 (2%)

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           +   +V  Y ACG+  +A    + +     + WN +V  +     +  A+ +  RM    
Sbjct: 85  LGTGVVASYLACGATKDALSVLERVTPSPAVWWNLLVREHIKEGHLDRAIGVSCRMLRAG 144

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
            +P   +    L       +   G+ +HG +   GF+  +V V +AL  MY +C  +E +
Sbjct: 145 TKPDHFTLPYALKACGELPSYCCGRALHGLICCNGFE-SNVFVCNALVAMYSRCGSLEDA 203

Query: 369 VAVFESAPGRSLE---CCNSLMTSLLHSGNIKDAVEMFGFM---VDEGIGLDEVTLSTTL 422
             VF+    + ++     NS++ + +   N + A+E+F  M   V E    +   + + +
Sbjct: 204 SLVFDEITRKGIDDVISWNSIVAAHVKGSNPRTALELFSEMSMIVHEKATNERSDIISIV 263

Query: 423 KALSVSASAN-LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
             L   AS   L   + +H  AI++G  ++  V  +L+D Y++CG +  + +VF  +   
Sbjct: 264 NILPACASLKALPQIKEIHSYAIRNGTFADAFVCNALIDTYAKCGSMNDAVKVFNVMEFK 323

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +VV + +++ GY+++G    A ++ E M +  +  D +T+  V+AG    G  +E    F
Sbjct: 324 DVVSWNAMVTGYTQSGNFGAAFELFENMRKENIPLDVITWSAVIAGYAQRGCSQEALDAF 383

Query: 542 NSM 544
             M
Sbjct: 384 QQM 386


>gi|414879990|tpg|DAA57121.1| TPA: putative NAC domain and pentatricopeptide repeat containing
            protein [Zea mays]
          Length = 1467

 Score =  260 bits (665), Expect = 1e-66,   Method: Compositional matrix adjust.
 Identities = 170/651 (26%), Positives = 322/651 (49%), Gaps = 65/651 (9%)

Query: 51   IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGC----GKFRHPKQALYLYDEMVSHGI 106
            ID   ++G L  A+++ + +P    VT   ++ GC    G+    ++A+    +M+S   
Sbjct: 756  IDMLGRAGRLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMGERAI----KMISDLE 811

Query: 107  KESASTFSSVLSVCSNAGFYTEGIQ-----------------------IHCRVLSLGFGL 143
            +ES   F+ + +V +  G +++  Q                       +H  ++  G   
Sbjct: 812  RESGGDFAVLSNVLTELGRFSDAEQARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGLHN 871

Query: 144  NLYIGSPLVDLY-MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM 202
              Y  S ++ LY +     V A  +F ++       WN +LR   +   P + +  Y K 
Sbjct: 872  CQYAMSKVIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKA 931

Query: 203  KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
            + +G++P+ L+F ++++ C+      EG+Q+H+HVIKLG++ ++IFV+N+L+  Y+ACG+
Sbjct: 932  QEKGMKPDNLTFPFVLKACAKTCAPKEGEQMHNHVIKLGFL-LDIFVSNSLIYLYAACGA 990

Query: 263  LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNF 322
            L  A+  F+ + V DV+SWNS++  Y+ ++ + + L LF  MQ    +    + V+ ++ 
Sbjct: 991  LACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISA 1050

Query: 323  ASRTGN-------------------VYFGKQIHGYVTKLGFDHGSVHVQSALTD------ 357
             +  G+                   VY G  +  Y  ++G    +  V S + D      
Sbjct: 1051 CTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTL 1110

Query: 358  -----MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
                  Y K   + S+  +F+  P + L   +S++ +   + +  D++E+F  M    + 
Sbjct: 1111 NAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQRAKVK 1170

Query: 413  LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
             D V +++ L A +   + +LG  + +H    ++  +++  +  SL+D +++CG ++ + 
Sbjct: 1171 PDAVVIASVLSACAHLGALDLG--KWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQEAL 1228

Query: 473  QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG 532
            QVF  +   + + + SI+ G + NG   EALD+   M+  G  P++VTFL VL  C +  
Sbjct: 1229 QVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACANRQ 1288

Query: 533  MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
            +V+EG   F  MKSV+ ++   +HY C++D+L RAG L+KA   + + P   D ++W  L
Sbjct: 1289 LVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVWRIL 1348

Query: 593  LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
            L +CR HGN  +       L EL+P + A    +SN Y+    +  +M +R
Sbjct: 1349 LGACRTHGNVAVAEMATKKLSELDPGNSADSMLLSNIYASADRWSDAMNVR 1399



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 152/631 (24%), Positives = 284/631 (45%), Gaps = 44/631 (6%)

Query: 40   PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
            P  N+ S N  I  F   G +  A+ LFD+MP R++V++  LI G  +     +AL L  
Sbjct: 541  PVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLR 600

Query: 100  EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
             M++ GI  S  T  +V+   SN G    G  ++      G   +  +G+ L+DLY ++G
Sbjct: 601  HMMAGGISPSEITVLAVIPAISNLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIG 660

Query: 160  PSVRALDLFDE-LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
                +L +FDE L  RNL +W  ++  F       E L ++ +M+  G++PN ++F  ++
Sbjct: 661  SVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVI 720

Query: 219  RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-D 277
              CS G L+++G      ++    +D  I     ++D     G L EA++  + +P++ +
Sbjct: 721  NACSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVN 780

Query: 278  VISWNSIVSIYADY--------------DL-------------IFDALELFFRMQLCRKR 310
            V  W  ++   + Y              DL             +   L  F   +  RK 
Sbjct: 781  VTVWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKL 840

Query: 311  PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYG-KCNVIESSV 369
               R  V+      +   +   K++H ++   G  H   +  S +  +Y    + + S+ 
Sbjct: 841  LDQRKIVKL-----QEAVMEAVKKLHAHLVVSGL-HNCQYAMSKVIRLYALHQSDLVSAH 894

Query: 370  AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
             VF+     +    N+L+  L  S   KDA+  +    ++G+  D +T    LKA + + 
Sbjct: 895  KVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKPDNLTFPFVLKACAKTC 954

Query: 430  SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            +   G    +H   IK GF  +I VS SL+  Y+ CG +  +  VF ++   +VV + S+
Sbjct: 955  APKEG--EQMHNHVIKLGFLLDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSL 1012

Query: 490  MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
            + GYS++   +E L + ++M    +  DKVT + V++ C H G       +   ++  + 
Sbjct: 1013 IGGYSQHNRLKEVLTLFKLMQAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNH- 1071

Query: 550  IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
            I+ D    + +ID   R G L  AE++  Q        + ++++ +    GN +  +++ 
Sbjct: 1072 IEVDVYLGNTLIDYYCRIGQLQSAEKVFSQMKDKNTVTL-NAMITAYAKGGNLVSAKKIF 1130

Query: 610  NILMELEPVDFA----VYSQVSNFYSEIGEF 636
            + +   + + ++     YSQ S+F   +  F
Sbjct: 1131 DQIPNKDLISWSSMICAYSQASHFSDSLELF 1161



 Score =  161 bits (407), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 119/426 (27%), Positives = 207/426 (48%), Gaps = 52/426 (12%)

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVE--FLNFA 323
           A K FD  P      W + +  Y+      +AL LF   +  R+  +  +FV    L   
Sbjct: 437 ALKVFDQSPA----PWRAFLKAYSHGPFPLEALHLF---KHARQHLADDTFVFTFVLKAC 489

Query: 324 SRTGNVYFGKQIHGYVTKLGFD-HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC 382
           +  G    G Q+H  V + GF+ H  VH  +AL ++Y     +  +  VF+  P +++  
Sbjct: 490 AGLGWHRAGAQLHALVVQKGFEFHAYVH--TALINVYVMSRCLVEARKVFDEMPVKNVVS 547

Query: 383 CNSLMTSLLHSGNIK-------------------------------DAVEMFGFMVDEGI 411
            N ++T     G ++                               +A+ +   M+  GI
Sbjct: 548 WNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACLYAEALTLLRHMMAGGI 607

Query: 412 GLDEVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
              E+T+   + A+S     NLG      +L+    K G  S+  V  SL+D Y++ G +
Sbjct: 608 SPSEITVLAVIPAIS-----NLGGILMGEMLNGYCEKKGIMSDARVGNSLIDLYAKIGSV 662

Query: 469 ELSHQVF-EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527
           + S +VF E +   N+V +TSI++G++ +G+  EAL++   M + G+ P+++TFL V+  
Sbjct: 663 QNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAGIKPNRITFLSVINA 722

Query: 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCM 587
           C+H G+V++G   F SM   Y ID + +H+ C+IDMLGRAG L +AE++++  P   +  
Sbjct: 723 CSHGGLVEQGLAFFKSMVYEYNIDPEIKHFGCIIDMLGRAGRLCEAEQIIEGLPMEVNVT 782

Query: 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
           +W  LL  C  +G   +G R   ++ +LE      ++ +SN  +E+G F  + Q R+   
Sbjct: 783 VWRILLGCCSKYGEVAMGERAIKMISDLERESGGDFAVLSNVLTELGRFSDAEQARKLLD 842

Query: 648 ARKLTR 653
            RK+ +
Sbjct: 843 QRKIVK 848



 Score =  134 bits (337), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 132/566 (23%), Positives = 243/566 (42%), Gaps = 86/566 (15%)

Query: 45  YSSNRTIDDFVKSGHLNS--AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           YSS   +    +S    S  A K+FD+ PA     +   +        P +AL+L+    
Sbjct: 417 YSSTAPVPATARSSTPPSRTALKVFDQSPA----PWRAFLKAYSHGPFPLEALHLFKHAR 472

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
            H + +    F+ VL  C+  G++  G Q+H  V+  GF  + Y+ + L+++Y+     V
Sbjct: 473 QH-LADDTFVFTFVLKACAGLGWHRAGAQLHALVVQKGFEFHAYVHTALINVYVMSRCLV 531

Query: 163 RALDLFDELPERNLATWNLMLRAFC-----ELSR------P------------------- 192
            A  +FDE+P +N+ +WN+M+  F      E +R      P                   
Sbjct: 532 EARKVFDEMPVKNVVSWNVMITGFAGWGEVEYARLLFDQMPCRNVVSWTGLIDGYTRACL 591

Query: 193 -DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI--GMLLDEGKQLHSHVIKLGWVDVNIFV 249
             E L +   M A G+ P+ ++   ++   S   G+L+  G+ L+ +  K G +  +  V
Sbjct: 592 YAEALTLLRHMMAGGISPSEITVLAVIPAISNLGGILM--GEMLNGYCEKKG-IMSDARV 648

Query: 250 ANALVDFYSACGSLIEAKKSFD-FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
            N+L+D Y+  GS+  + K FD  +   +++SW SI+S +A + L  +ALELF  M+   
Sbjct: 649 GNSLIDLYAKIGSVQNSLKVFDEMLDRRNLVSWTSIISGFAMHGLSVEALELFAEMRRAG 708

Query: 309 KRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
            +P+  +F+  +N  S  G V     +F   ++ Y       H        + DM G+  
Sbjct: 709 IKPNRITFLSVINACSHGGLVEQGLAFFKSMVYEYNIDPEIKHF-----GCIIDMLGRAG 763

Query: 364 VIESSVAVFESAPGRS--------LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            +  +  + E  P           L CC+      +     + A++M   +  E  G D 
Sbjct: 764 RLCEAEQIIEGLPMEVNVTVWRILLGCCSKYGEVAMG----ERAIKMISDLERES-GGDF 818

Query: 416 VTLSTTLKALSVSASAN------------------LGSCRLLHCCAIKSGFESNIAVSCS 457
             LS  L  L   + A                   + + + LH   + SG  +       
Sbjct: 819 AVLSNVLTELGRFSDAEQARKLLDQRKIVKLQEAVMEAVKKLHAHLVVSGLHNCQYAMSK 878

Query: 458 LMDAYS-RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           ++  Y+     +  +H+VF++I SP    + +++ G +++   ++A+   +   ++G+ P
Sbjct: 879 VIRLYALHQSDLVSAHKVFKQIESPTTFLWNTLLRGLAQSDAPKDAIVFYKKAQEKGMKP 938

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFN 542
           D +TF  VL  C  +   KEG+ + N
Sbjct: 939 DNLTFPFVLKACAKTCAPKEGEQMHN 964



 Score =  116 bits (291), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 77/310 (24%), Positives = 150/310 (48%), Gaps = 32/310 (10%)

Query: 42   LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
            L+I+ SN  I  +   G L  A+ +F+EM  +D+V++N LI G  +    K+ L L+  M
Sbjct: 973  LDIFVSNSLIYLYAACGALACARSVFNEMLVKDVVSWNSLIGGYSQHNRLKEVLTLFKLM 1032

Query: 102  VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP- 160
             +  ++    T   V+S C++ G ++    +   +      +++Y+G+ L+D Y R+G  
Sbjct: 1033 QAEEVQADKVTMVKVISACTHLGDWSMADCMVRYIEHNHIEVDVYLGNTLIDYYCRIGQL 1092

Query: 161  ------------------------------SVRALDLFDELPERNLATWNLMLRAFCELS 190
                                           V A  +FD++P ++L +W+ M+ A+ + S
Sbjct: 1093 QSAEKVFSQMKDKNTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQAS 1152

Query: 191  RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
               + L ++ +M+   V+P+ +    ++  C+    LD GK +H +V +   +  +  + 
Sbjct: 1153 HFSDSLELFRQMQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNN-IKADTIME 1211

Query: 251  NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            N+L+D ++ CG + EA + F  +   D +SWNSI+   A+     +AL++F  M     R
Sbjct: 1212 NSLIDMFAKCGCVQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPR 1271

Query: 311  PSIRSFVEFL 320
            P+  +F+  L
Sbjct: 1272 PNEVTFLGVL 1281



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 62/240 (25%), Positives = 118/240 (49%), Gaps = 1/240 (0%)

Query: 43   NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            N  + N  I  + K G+L SAKK+FD++P +D+++++ +I    +  H   +L L+ +M 
Sbjct: 1106 NTVTLNAMITAYAKGGNLVSAKKIFDQIPNKDLISWSSMICAYSQASHFSDSLELFRQMQ 1165

Query: 103  SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
               +K  A   +SVLS C++ G    G  IH  V       +  + + L+D++ + G   
Sbjct: 1166 RAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGCVQ 1225

Query: 163  RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
             AL +F ++ E++  +WN ++         DE L +++ M  EG  PN ++F  ++  C+
Sbjct: 1226 EALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIACA 1285

Query: 223  IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISW 281
               L++EG      +  +  ++  +     +VD  S  G L +A      +P+  D + W
Sbjct: 1286 NRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPVVW 1345



 Score = 57.8 bits (138), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 45/188 (23%), Positives = 82/188 (43%), Gaps = 3/188 (1%)

Query: 1    MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
            M   K+ P    I ++   C  +  L     +  Y + N  + +    N  ID F K G 
Sbjct: 1164 MQRAKVKPDAVVIASVLSACAHLGALDLGKWIHDYVRRNNIKADTIMENSLIDMFAKCGC 1223

Query: 60   LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
            +  A ++F +M  +D +++N +I G        +AL ++  M++ G + +  TF  VL  
Sbjct: 1224 VQEALQVFTDMEEKDTLSWNSIILGLANNGFEDEALDIFHSMLTEGPRPNEVTFLGVLIA 1283

Query: 120  CSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
            C+N     EG+    R+ S+      +     +VD+  R G   +A+    E+P   +  
Sbjct: 1284 CANRQLVEEGLDHFERMKSVHNLEPQMKHYGCVVDILSRAGQLEKAVSFISEMPLAPDPV 1343

Query: 178  TWNLMLRA 185
             W ++L A
Sbjct: 1344 VWRILLGA 1351


>gi|4966374|gb|AAD34705.1|AC006341_33 >F3O9.28 [Arabidopsis thaliana]
          Length = 1027

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/593 (27%), Positives = 306/593 (51%), Gaps = 15/593 (2%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+++ A  +FD+M  RD +++N + +   +  H +++  ++  M     + +++T S++L
Sbjct: 299 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 358

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           SV  +      G  IH  V+ +GF   + + + L+ +Y   G SV A  +F ++P ++L 
Sbjct: 359 SVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 418

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN ++ +F    R  + L +   M + G   N ++F   +  C      ++G+ LH  V
Sbjct: 419 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 478

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +  G +  N  + NALV  Y   G + E+++    +P  DV++WN+++  YA+ +    A
Sbjct: 479 VVSG-LFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKA 537

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY-FGKQIHGYVTKLGFDHGSVHVQSALT 356
           L  F  M++     +  + V  L+     G++   GK +H Y+   GF+    HV+++L 
Sbjct: 538 LAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE-HVKNSLI 596

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY KC  + SS  +F     R++   N+++ +  H G+ ++ +++   M   G+ LD+ 
Sbjct: 597 TMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQF 656

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE-----LS 471
           + S  L A   +  A L   + LH  A+K GFE +  +  +  D YS+CG I      L 
Sbjct: 657 SFSEGLSA--AAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 714

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             V   +PS N+     +++   R+G   E       M++ G+ P  VTF+ +L  C+H 
Sbjct: 715 PSVNRSLPSWNI-----LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 769

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V +G   ++ +   +G++   +H  C+ID+LGR+G L +AE  + + P   + ++W S
Sbjct: 770 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 829

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           LL SC++HGN   GR+ A  L +LEP D +VY   SN ++  G +E    +R+
Sbjct: 830 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRK 882



 Score =  197 bits (502), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 143/563 (25%), Positives = 273/563 (48%), Gaps = 33/563 (5%)

Query: 41  QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
           +L++  +N  I+ + K G +  A+ LFD MP R+ V++N ++SG  +     + +  + +
Sbjct: 104 RLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRK 163

Query: 101 MVSHGIKESASTFSSVLSVCSNAG-FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           M   GIK S+   +S+++ C  +G  + EG+Q+H  V   G   ++Y+ + ++ LY   G
Sbjct: 164 MCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYG 223

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               +  +F+E+P+RN+ +W  ++  + +   P+EV+ +Y   K E +            
Sbjct: 224 LVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY---KDESL------------ 268

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
                     G+Q+   V+K G ++  + V N+L+    + G++  A   FD +   D I
Sbjct: 269 ----------GRQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTI 317

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNSI + YA    I ++  +F  M+      +  +    L+      +  +G+ IHG V
Sbjct: 318 SWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLV 377

Query: 340 TKLGFDHGSVHVQSALTDMY-GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
            K+GFD   V V + L  MY G    +E+++ VF+  P + L   NSLM S ++ G   D
Sbjct: 378 VKMGFD-SVVCVCNTLLRMYAGAGRSVEANL-VFKQMPTKDLISWNSLMASFVNDGRSLD 435

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+ +   M+  G  ++ VT ++ L A         G  R+LH   + SG   N  +  +L
Sbjct: 436 ALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKG--RILHGLVVVSGLFYNQIIGNAL 493

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y + G +  S +V  ++P  +VV + +++ GY+ +    +AL   + M   G+  + 
Sbjct: 494 VSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNY 553

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +T + VL+ C   G + E     ++     G ++D    + +I M  + G L  +++L  
Sbjct: 554 ITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFN 613

Query: 579 QTPGGGDCMMWSSLLRSCRVHGN 601
                 + + W+++L +   HG+
Sbjct: 614 GLD-NRNIITWNAMLAANAHHGH 635



 Score =  145 bits (366), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 112/468 (23%), Positives = 222/468 (47%), Gaps = 32/468 (6%)

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           T G  +H   +     L++   + L+++Y + G    A  LFD +P RN  +WN M+   
Sbjct: 89  TTGRAVHALCVKGLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGI 148

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVDV 245
             +    E +  + KM   G++P+      +V  C   G +  EG Q+H  V K G +  
Sbjct: 149 VRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQVHGFVAKSGLLS- 207

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQ 305
           +++V+ A++  Y   G +  ++K F+ +P  +V+SW S++  Y+D     + ++++    
Sbjct: 208 DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIY---- 263

Query: 306 LCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365
              K  S+                  G+QI G V K G +   + V+++L  M G    +
Sbjct: 264 ---KDESL------------------GRQIIGQVVKSGLE-SKLAVENSLISMLGSMGNV 301

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           + +  +F+    R     NS+  +   +G+I+++  +F  M      ++  T+ST L  L
Sbjct: 302 DYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVL 361

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
                   G  R +H   +K GF+S + V  +L+  Y+  G    ++ VF+++P+ +++ 
Sbjct: 362 GHVDHQKWG--RGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLIS 419

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + S+M  +  +G   +AL +L  MI  G   + VTF   LA C      ++G+ + + + 
Sbjct: 420 WNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGR-ILHGLV 478

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            V G+  ++   + ++ M G+ G + ++  +L Q P   D + W++L+
Sbjct: 479 VVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMP-RRDVVAWNALI 525



 Score =  110 bits (275), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 91/382 (23%), Positives = 176/382 (46%), Gaps = 32/382 (8%)

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
           C+   G S   +   G+ +H+  +K G V +++   N L++ Y+  G +  A+  FD +P
Sbjct: 76  CFDQIGFSQITIETTGRAVHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMP 134

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF-GK 333
           V + +SWN+++S      L  + +E F +M     +PS       +    R+G+++  G 
Sbjct: 135 VRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGV 194

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           Q+HG+V K G     V+V +A+  +YG   ++  S  VFE  P R++    SLM      
Sbjct: 195 QVHGFVAKSGL-LSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDK 253

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G  ++ ++++    DE +G                        R +    +KSG ES +A
Sbjct: 254 GEPEEVIDIYK---DESLG------------------------RQIIGQVVKSGLESKLA 286

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V  SL+      G+++ ++ +F+++   + + + SI   Y++NG   E+  +  +M +  
Sbjct: 287 VENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFH 346

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
              +  T   +L+   H    K G+ + + +    G D+     + ++ M   AG   +A
Sbjct: 347 DEVNSTTVSTLLSVLGHVDHQKWGRGI-HGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEA 405

Query: 574 EELLQQTPGGGDCMMWSSLLRS 595
             + +Q P   D + W+SL+ S
Sbjct: 406 NLVFKQMP-TKDLISWNSLMAS 426



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 76/309 (24%), Positives = 137/309 (44%), Gaps = 45/309 (14%)

Query: 332 GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           G+ +H    K G    SV   + L +MY K   ++ +  +F+  P R+    N++M+ ++
Sbjct: 91  GRAVHALCVK-GLVRLSVLHTNTLINMYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIV 149

Query: 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451
             G   + +E F  M D GI      +++ + A   S S      ++ H    KSG  S+
Sbjct: 150 RVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFREGVQV-HGFVAKSGLLSD 208

Query: 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML-EVMI 510
           + VS +++  Y   G +  S +VFE++P  NVV +TS+M GYS  G   E +D+  +  +
Sbjct: 209 VYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKDESL 268

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
            R +I                     GQ+V + ++S   ++      + +I MLG  G +
Sbjct: 269 GRQII---------------------GQVVKSGLESKLAVE------NSLISMLGSMGNV 301

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           D A  +  Q     D + W+S+  +   +G+             +E   F ++S +  F+
Sbjct: 302 DYANYIFDQMS-ERDTISWNSIAAAYAQNGH-------------IEE-SFRIFSLMRRFH 346

Query: 631 SEIGEFEVS 639
            E+    VS
Sbjct: 347 DEVNSTTVS 355


>gi|15218216|ref|NP_173004.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75191104|sp|Q9M9E2.1|PPR45_ARATH RecName: Full=Pentatricopeptide repeat-containing protein
           At1g15510, chloroplastic; Flags: Precursor
 gi|8072389|gb|AAF71977.1|AC013453_2 Hypothetical protein [Arabidopsis thaliana]
 gi|300825685|gb|ADK35876.1| chloroplast vanilla cream 1 [Arabidopsis thaliana]
 gi|332191210|gb|AEE29331.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 866

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 163/612 (26%), Positives = 311/612 (50%), Gaps = 10/612 (1%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESAST 112
           FV+ G+L  A  +F +M  R++ ++N+L+ G  K  +  +A+ LY  M+   G+K    T
Sbjct: 139 FVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPDVYT 198

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           F  VL  C        G ++H  V+  G+ L++ + + L+ +Y++ G    A  LFD +P
Sbjct: 199 FPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLLFDRMP 258

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232
            R++ +WN M+  + E     E L ++  M+   V+P+ ++   ++  C +      G+ 
Sbjct: 259 RRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRRLGRD 318

Query: 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292
           +H++VI  G+  V+I V N+L   Y   GS  EA+K F  +   D++SW +++S Y +Y+
Sbjct: 319 IHAYVITTGFA-VDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY-EYN 376

Query: 293 LIFD-ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351
            + D A++ +  M     +P   +    L+  +  G++  G ++H    K       V V
Sbjct: 377 FLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLI-SYVIV 435

Query: 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411
            + L +MY KC  I+ ++ +F + P +++    S++  L  +       E   F+    +
Sbjct: 436 ANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNR---CFEALIFLRQMKM 492

Query: 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
            L    ++ T    + +    L   + +H   +++G   +  +  +L+D Y RCG +  +
Sbjct: 493 TLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDDFLPNALLDMYVRCGRMNTA 552

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
              F      +V  +  ++ GYS  G G   +++ + M++  + PD++TF+ +L GC+ S
Sbjct: 553 WSQFNS-QKKDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCGCSKS 611

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
            MV++G + F+ M+  YG+  + +HY+C++D+LGRAG L +A + +Q+ P   D  +W +
Sbjct: 612 QMVRQGLMYFSKMED-YGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPDPAVWGA 670

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL +CR+H    +G   A  + EL+      Y  + N Y++ G++    ++R       L
Sbjct: 671 LLNACRIHHKIDLGELSAQHIFELDKKSVGYYILLCNLYADCGKWREVAKVRRMMKENGL 730

Query: 652 TRDIGHSLIEVN 663
           T D G S +EV 
Sbjct: 731 TVDAGCSWVEVK 742



 Score =  178 bits (451), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 133/490 (27%), Positives = 234/490 (47%), Gaps = 14/490 (2%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKL 66
           P V T   +  TC  I  L+    +  +  +   +L+I   N  I  +VK G + SA+ L
Sbjct: 194 PDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYELDIDVVNALITMYVKCGDVKSARLL 253

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD MP RD++++N +ISG  +     + L L+  M    +     T +SV+S C   G  
Sbjct: 254 FDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDR 313

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
             G  IH  V++ GF +++ + + L  +Y+  G    A  LF  +  +++ +W  M+  +
Sbjct: 314 RLGRDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY 373

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
                PD+ +  Y  M  + V+P+ ++   ++  C+    LD G +LH   IK   +   
Sbjct: 374 EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELHKLAIKARLISY- 432

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + VAN L++ YS C  + +A   F  IP  +VISW SI++     +  F+AL +F R   
Sbjct: 433 VIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEAL-IFLRQMK 491

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKLGFDHGSVHVQSALTDMYGKCNV 364
              +P+  +    L   +R G +  GK+IH +V  T +G D     + +AL DMY +C  
Sbjct: 492 MTLQPNAITLTAALAACARIGALMCGKEIHAHVLRTGVGLDD---FLPNALLDMYVRCGR 548

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           + ++ + F S   + +   N L+T     G     VE+F  MV   +  DE+T  + L  
Sbjct: 549 MNTAWSQFNSQK-KDVTSWNILLTGYSERGQGSMVVELFDRMVKSRVRPDEITFISLLCG 607

Query: 425 LSVSASANLGSCRLLHCCAIKS-GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPN 482
            S S     G   L++   ++  G   N+     ++D   R G ++ +H+  +K+P +P+
Sbjct: 608 CSKSQMVRQG---LMYFSKMEDYGVTPNLKHYACVVDLLGRAGELQEAHKFIQKMPVTPD 664

Query: 483 VVCFTSIMNG 492
              + +++N 
Sbjct: 665 PAVWGALLNA 674



 Score =  177 bits (450), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 114/419 (27%), Positives = 213/419 (50%), Gaps = 5/419 (1%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151
           ++A+ L + M    +      F +++ +C       EG +++   LS    L + +G+  
Sbjct: 76  EEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALSSMSSLGVELGNAF 135

Query: 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPN 210
           + +++R G  V A  +F ++ ERNL +WN+++  + +    DE + +Y++M    GV+P+
Sbjct: 136 LAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYHRMLWVGGVKPD 195

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +F  ++R C     L  GK++H HV++ G+ +++I V NAL+  Y  CG +  A+  F
Sbjct: 196 VYTFPCVLRTCGGIPDLARGKEVHVHVVRYGY-ELDIDVVNALITMYVKCGDVKSARLLF 254

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +P  D+ISWN+++S Y +  +  + LELFF M+     P + +    ++     G+  
Sbjct: 255 DRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSVISACELLGDRR 314

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
            G+ IH YV   GF    + V ++LT MY        +  +F     + +    ++++  
Sbjct: 315 LGRDIHAYVITTGF-AVDISVCNSLTQMYLNAGSWREAEKLFSRMERKDIVSWTTMISGY 373

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
            ++     A++ +  M  + +  DE+T++  L A +     + G    LH  AIK+   S
Sbjct: 374 EYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGV--ELHKLAIKARLIS 431

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509
            + V+ +L++ YS+C  I+ +  +F  IP  NV+ +TSI+ G   N    EAL  L  M
Sbjct: 432 YVIVANNLINMYSKCKCIDKALDIFHNIPRKNVISWTSIIAGLRLNNRCFEALIFLRQM 490



 Score =  138 bits (347), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 101/422 (23%), Positives = 204/422 (48%), Gaps = 15/422 (3%)

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           L   C   + +E +++ N M+   V  +   F  +VR C      +EG +++S  +    
Sbjct: 66  LHGLCANGKLEEAMKLLNSMQELRVAVDEDVFVALVRLCEWKRAQEEGSKVYSIALS-SM 124

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
             + + + NA +  +   G+L++A   F  +   ++ SWN +V  YA      +A+ L+ 
Sbjct: 125 SSLGVELGNAFLAMFVRFGNLVDAWYVFGKMSERNLFSWNVLVGGYAKQGYFDEAMCLYH 184

Query: 303 RM-QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361
           RM  +   +P + +F   L       ++  GK++H +V + G++   + V +AL  MY K
Sbjct: 185 RMLWVGGVKPDVYTFPCVLRTCGGIPDLARGKEVHVHVVRYGYEL-DIDVVNALITMYVK 243

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           C  ++S+  +F+  P R +   N++++    +G   + +E+F  M    +  D +TL++ 
Sbjct: 244 CGDVKSARLLFDRMPRRDIISWNAMISGYFENGMCHEGLELFFAMRGLSVDPDLMTLTSV 303

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           + A  +     LG  R +H   I +GF  +I+V  SL   Y   G    + ++F ++   
Sbjct: 304 ISACELLGDRRLG--RDIHAYVITTGFAVDISVCNSLTQMYLNAGSWREAEKLFSRMERK 361

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG---- 537
           ++V +T++++GY  N +  +A+D   +M Q  + PD++T   VL+ C   G +  G    
Sbjct: 362 DIVSWTTMISGYEYNFLPDKAIDTYRMMDQDSVKPDEITVAAVLSACATLGDLDTGVELH 421

Query: 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCR 597
           +L   +    Y I A+      +I+M  +   +DKA ++    P   + + W+S++   R
Sbjct: 422 KLAIKARLISYVIVANN-----LINMYSKCKCIDKALDIFHNIP-RKNVISWTSIIAGLR 475

Query: 598 VH 599
           ++
Sbjct: 476 LN 477


>gi|15228257|ref|NP_188283.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
 gi|75274288|sp|Q9LUS3.1|PP237_ARATH RecName: Full=Pentatricopeptide repeat-containing protein At3g16610
 gi|11994615|dbj|BAB02752.1| selenium-binding protein-like [Arabidopsis thaliana]
 gi|332642322|gb|AEE75843.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
          Length = 654

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/608 (27%), Positives = 318/608 (52%), Gaps = 15/608 (2%)

Query: 63  AKKLFDEMPARDM--VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120
           A+ +FDE+P   +  + ++L+I         ++AL LY +M++ G++ +  T+  VL  C
Sbjct: 54  ARHVFDEIPHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKAC 113

Query: 121 SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWN 180
           +      +G  IH  V    F  ++Y+ + LVD Y + G    A+ +FDE+P+R++  WN
Sbjct: 114 AGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWN 173

Query: 181 LMLRAFCELSRPDEVLRMYNKMK-AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239
            M+  F       +V+ ++  M+  +G+ PN  +   M         L EGK +H +  +
Sbjct: 174 AMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREGKAVHGYCTR 233

Query: 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299
           +G+ + ++ V   ++D Y+    +I A++ FD     + ++W++++  Y + ++I +A E
Sbjct: 234 MGFSN-DLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEAGE 292

Query: 300 LFFRMQLCRKRPSIRSFVEF---LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           +FF+M L     ++ + V     L   +R G++  G+ +H Y  K GF    + VQ+ + 
Sbjct: 293 VFFQM-LVNDNVAMVTPVAIGLILMGCARFGDLSGGRCVHCYAVKAGFIL-DLTVQNTII 350

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
             Y K   +  +   F     + +   NSL+T  + +   +++  +F  M   GI  D  
Sbjct: 351 SFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRPEESFRLFHEMRTSGIRPDIT 410

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476
           TL   L A S  A+   GS    H   +  G+  N ++  +LMD Y++CG ++++ +VF+
Sbjct: 411 TLLGVLTACSHLAALGHGSS--CHGYCVVHGYAVNTSICNALMDMYTKCGKLDVAKRVFD 468

Query: 477 KIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE 536
            +   ++V + +++ G+  +G+G+EAL +   M + G+ PD+VT L +L+ C+HSG+V E
Sbjct: 469 TMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPDEVTLLAILSACSHSGLVDE 528

Query: 537 GQLVFNSM-KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           G+ +FNSM +  + +     HY+CM D+L RAG LD+A + + + P   D  +  +LL +
Sbjct: 529 GKQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAYDFVNKMPFEPDIRVLGTLLSA 588

Query: 596 CRVHGNEIIGRRVANILMEL-EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           C  + N  +G  V+  +  L E  +  V   +SN YS    +E + +IR     R L + 
Sbjct: 589 CWTYKNAELGNEVSKKMQSLGETTESLVL--LSNTYSAAERWEDAARIRMIQKKRGLLKT 646

Query: 655 IGHSLIEV 662
            G+S ++V
Sbjct: 647 PGYSWVDV 654



 Score =  155 bits (392), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 130/513 (25%), Positives = 234/513 (45%), Gaps = 18/513 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ-PNPQLNIYSSNRTIDDFVKSGH 59
           ML++ + P   T   +   C  +  +    L+ S+    +   ++Y     +D + K G 
Sbjct: 94  MLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDFATDMYVCTALVDFYAKCGE 153

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKESASTFSSVLS 118
           L  A K+FDEMP RDMV +N +ISG          + L+ +M    G+  + ST   +  
Sbjct: 154 LEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFP 213

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLAT 178
               AG   EG  +H     +GF  +L + + ++D+Y +    + A  +FD   ++N  T
Sbjct: 214 ALGRAGALREGKAVHGYCTRMGFSNDLVVKTGILDVYAKSKCIIYARRVFDLDFKKNEVT 273

Query: 179 WNLMLRAFCELSRPDEVLRMYNKM----KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           W+ M+  + E     E   ++ +M        V P  +    M  GC+    L  G+ +H
Sbjct: 274 WSAMIGGYVENEMIKEAGEVFFQMLVNDNVAMVTPVAIGLILM--GCARFGDLSGGRCVH 331

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
            + +K G++ +++ V N ++ FY+  GSL +A + F  I + DVIS+NS+++        
Sbjct: 332 CYAVKAGFI-LDLTVQNTIISFYAKYGSLCDAFRQFSEIGLKDVISYNSLITGCVVNCRP 390

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            ++  LF  M+    RP I + +  L   S    +  G   HGY    G+   +  + +A
Sbjct: 391 EESFRLFHEMRTSGIRPDITTLLGVLTACSHLAALGHGSSCHGYCVVHGYAVNT-SICNA 449

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L DMY KC  ++ +  VF++   R +   N+++      G  K+A+ +F  M + G+  D
Sbjct: 450 LMDMYTKCGKLDVAKRVFDTMHKRDIVSWNTMLFGFGIHGLGKEALSLFNSMQETGVNPD 509

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMDAYSRCGHIELSH 472
           EVTL   L A S S   + G  + L     +  F     I     + D  +R G+++ ++
Sbjct: 510 EVTLLAILSACSHSGLVDEG--KQLFNSMSRGDFNVIPRIDHYNCMTDLLARAGYLDEAY 567

Query: 473 QVFEKIP-SPNVVCFTSIMNG---YSRNGMGRE 501
               K+P  P++    ++++    Y    +G E
Sbjct: 568 DFVNKMPFEPDIRVLGTLLSACWTYKNAELGNE 600



 Score =  100 bits (249), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/380 (24%), Positives = 177/380 (46%), Gaps = 20/380 (5%)

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV--ISWNSIVSI 287
           G+ +H H++K      +  V   L   Y++C  +  A+  FD IP   +  I+W+ ++  
Sbjct: 18  GQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEIPHPRINPIAWDLMIRA 77

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347
           YA  D    AL+L+++M     RP+  ++   L   +    +  GK IH +V    F   
Sbjct: 78  YASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDDGKLIHSHVNCSDF-AT 136

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407
            ++V +AL D Y KC  +E ++ VF+  P R +   N++++       + D + +F  M 
Sbjct: 137 DMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGFSLHCCLTDVIGLFLDMR 196

Query: 408 D-EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             +G+  +  T+     AL  + +   G  + +H    + GF +++ V   ++D Y++  
Sbjct: 197 RIDGLSPNLSTIVGMFPALGRAGALREG--KAVHGYCTRMGFSNDLVVKTGILDVYAKSK 254

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC--- 523
            I  + +VF+     N V +++++ GY  N M +EA    EV  Q  L+ D V  +    
Sbjct: 255 CIIYARRVFDLDFKKNEVTWSAMIGGYVENEMIKEA---GEVFFQM-LVNDNVAMVTPVA 310

Query: 524 ---VLAGCNHSGMVKEGQLVF-NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
              +L GC   G +  G+ V   ++K+ + +D   Q+   +I    + G L  A     +
Sbjct: 311 IGLILMGCARFGDLSGGRCVHCYAVKAGFILDLTVQN--TIISFYAKYGSLCDAFRQFSE 368

Query: 580 TPGGGDCMMWSSLLRSCRVH 599
             G  D + ++SL+  C V+
Sbjct: 369 I-GLKDVISYNSLITGCVVN 387



 Score = 78.2 bits (191), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/259 (25%), Positives = 131/259 (50%), Gaps = 15/259 (5%)

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
           F+  L    R+ N+  G+ IH ++ K      S  V   LT +Y  CN +E +  VF+  
Sbjct: 2   FLSLLETCIRSRNLVLGQVIHQHLLKRSLTLSSSTVLVNLTRLYASCNEVELARHVFDEI 61

Query: 376 P-GRSLECCNSLMTSLLHSGNIKD-AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
           P  R       LM     S +  + A++++  M++ G+   + T    LKA +   + + 
Sbjct: 62  PHPRINPIAWDLMIRAYASNDFAEKALDLYYKMLNSGVRPTKYTYPFVLKACAGLRAIDD 121

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G  +L+H     S F +++ V  +L+D Y++CG +E++ +VF+++P  ++V + ++++G+
Sbjct: 122 G--KLIHSHVNCSDFATDMYVCTALVDFYAKCGELEMAIKVFDEMPKRDMVAWNAMISGF 179

Query: 494 SRNGMGREALDM-LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552
           S +    + + + L++    GL P+  T + +      +G ++EG       K+V+G   
Sbjct: 180 SLHCCLTDVIGLFLDMRRIDGLSPNLSTIVGMFPALGRAGALREG-------KAVHGY-C 231

Query: 553 DRQHYSCMIDMLGRAGILD 571
            R  +S   D++ + GILD
Sbjct: 232 TRMGFSN--DLVVKTGILD 248


>gi|77553408|gb|ABA96204.1| pentatricopeptide, putative [Oryza sativa Japonica Group]
          Length = 887

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/670 (24%), Positives = 319/670 (47%), Gaps = 12/670 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSY------CQPNPQLNIYSSNRTIDDF 54
           M+ +   P   ++ T+   C S+V  SS+ LL +        +     N +  +  +  +
Sbjct: 79  MIRSGFCPNEFSLATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSLLLMY 138

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            K G + +A++ F  +  +D+  +N ++ G         A+     M   G+     T+ 
Sbjct: 139 AKHGRIAAAQRAFAHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDRYTYI 198

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           S +  CS +  +  G Q+HC V+      N  + + LVD+Y R      A  +F ++ ++
Sbjct: 199 SAVKACSISAQWGLGRQLHCLVIHSMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQK 258

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           +  +WN M   F        V      M   G +PN ++F  ++R          G Q+ 
Sbjct: 259 DTVSWNTMFSGFAHDEDDKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLGLQIF 318

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           +   + G+ D N+ VANA+++    CG L  A   F  +   ++++WN I++ Y  +   
Sbjct: 319 ALAYRHGYTD-NVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLFSHS 377

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            DA+ LF  +    +RP   ++   L+           +QIH  + K GF        S 
Sbjct: 378 EDAMRLFRSLVCIGERPDEFTYSAVLSAFQEAHGARDHEQIHAIILKQGFASCQFVSTSL 437

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG-FMVDEGIGL 413
           +         ++SS+ + E +    L    +++++ L  G   + + +F  F  D     
Sbjct: 438 IKANAAAFGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLFRGDSTNKP 497

Query: 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473
           DE  L+T L A   + +A +  CR +H   +K+G  ++  V+ +++DAY++CG I  +  
Sbjct: 498 DEFILATVLNA--CANAALIRHCRCIHSLVLKTGHSNHFCVASAVVDAYAKCGEITSAES 555

Query: 474 VFEKIPSP--NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            F  + S   + + + +++  Y+ +G+  EAL++ E M +  L P   TF+ +L+ C+H 
Sbjct: 556 AFTAVSSATNDAIMYNTMLTAYANHGLIHEALNLYEEMTKAKLNPTPATFVAILSACSHL 615

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V++G+L F++M S YG+   R +Y+C++D+L R G+LD+A+ ++   P      +W S
Sbjct: 616 GLVEQGKLAFSTMLSAYGMHPARANYACLVDLLARKGLLDEAKGVIDAMPFQPWPAVWRS 675

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           L+  CR+HGN+ +G   A  ++ + P     Y  +SN Y++ GE++ + + R   +   L
Sbjct: 676 LVNGCRIHGNKQLGVLAAEQILRMAPSSDGAYVSLSNVYADDGEWQSAEETRRRMVQNNL 735

Query: 652 TRDIGHSLIE 661
            +  G+  +E
Sbjct: 736 QKVHGYVALE 745



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 131/563 (23%), Positives = 248/563 (44%), Gaps = 29/563 (5%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + + G L+SA K+FDEMP R++V++  ++S   +   P      +  M+  G   +  + 
Sbjct: 32  YARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMIRSGFCPNEFSL 91

Query: 114 SSVLSVCSNAGFYTE-----GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +++L+ C +   ++       + +H   +  G   N ++GS L+ +Y + G    A   F
Sbjct: 92  ATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAAQRAF 151

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
             +  ++L  WN ML  +         +     M   G+ P+  ++   V+ CSI     
Sbjct: 152 AHIRNKDLTCWNAMLEGYVSNGFGHHAISTVLVMHHSGLAPDRYTYISAVKACSISAQWG 211

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
            G+QLH  VI    ++ N  V N+LVD Y        A   F  I   D +SWN++ S +
Sbjct: 212 LGRQLHCLVIH-SMLESNTSVMNSLVDMYFRARQKETAASVFRKIRQKDTVSWNTMFSGF 270

Query: 289 A-DYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345
           A D D   D     + + + R   +P+  +F   L  +    N   G QI     + G+ 
Sbjct: 271 AHDED---DKAVFGYLIDMSRTGFKPNEVTFSVLLRLSGAKENASLGLQIFALAYRHGYT 327

Query: 346 HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGF 405
             +V V +A+ +M  +C +++ +   F S   R++   N ++       + +DA+ +F  
Sbjct: 328 -DNVLVANAVINMLFRCGLLDRAYGFFCSLTFRNIVTWNEIIAGYGLFSHSEDAMRLFRS 386

Query: 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465
           +V  G   DE T S  L A   +  A       +H   +K GF S   VS SL+ A +  
Sbjct: 387 LVCIGERPDEFTYSAVLSAFQEAHGAR--DHEQIHAIILKQGFASCQFVSTSLIKANAAA 444

Query: 466 -GHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG---LIPDKVTF 521
            G ++ S ++ E      +V + +I++ + ++G+  E + +  +   RG     PD+   
Sbjct: 445 FGSVQSSLKIIEDSGKMELVSWGAIISAFLKHGLNDEVIFLFNLF--RGDSTNKPDEFIL 502

Query: 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY---SCMIDMLGRAGILDKAEELLQ 578
             VL  C ++ +++  + +     S+        H+   S ++D   + G +  AE    
Sbjct: 503 ATVLNACANAALIRHCRCI----HSLVLKTGHSNHFCVASAVVDAYAKCGEITSAESAFT 558

Query: 579 Q-TPGGGDCMMWSSLLRSCRVHG 600
             +    D +M++++L +   HG
Sbjct: 559 AVSSATNDAIMYNTMLTAYANHG 581



 Score = 44.7 bits (104), Expect = 0.19,   Method: Compositional matrix adjust.
 Identities = 42/207 (20%), Positives = 90/207 (43%), Gaps = 13/207 (6%)

Query: 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521
           Y+R G ++ + +VF+++P  N+V +T++++  +RNG           MI+ G  P++ + 
Sbjct: 32  YARRGLLDSALKVFDEMPHRNLVSWTAMVSASTRNGAPHLGFRFFVSMIRSGFCPNEFSL 91

Query: 522 LCVLAGCN----HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577
             +L  C+    HS       L  + +    G+D++    S ++ M  + G +  A+   
Sbjct: 92  ATMLTACHSMVAHSSNKLLIALSLHGVAVRAGLDSNPFVGSSLLLMYAKHGRIAAAQRAF 151

Query: 578 QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637
                  D   W+++L     +G    G    + ++ +     A      + Y+ I   +
Sbjct: 152 AHIR-NKDLTCWNAMLEGYVSNG---FGHHAISTVLVMHHSGLA-----PDRYTYISAVK 202

Query: 638 VSMQIRETALARKLTRDIGHSLIEVNS 664
                 +  L R+L   + HS++E N+
Sbjct: 203 ACSISAQWGLGRQLHCLVIHSMLESNT 229


>gi|297794157|ref|XP_002864963.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297310798|gb|EFH41222.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 720

 Score =  260 bits (665), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 165/555 (29%), Positives = 292/555 (52%), Gaps = 6/555 (1%)

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +  TFS +L  C +    +    I  ++L  GF + L  GS LVD  ++ G    A  LF
Sbjct: 46  TTHTFSQLLRQCIDERSISGIKNIQAQMLKSGFPVELS-GSKLVDASLKCGEIGYARQLF 104

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D +PER++ TWN ++  + +  R  E + MY  M +  V P+  +   + +  S   L  
Sbjct: 105 DGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNNVLPDEYTLSSVFKAFSDLSLEK 164

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           E ++ H   + LG    N+FV +ALVD Y   G   EAK   D +   DV+   +++  Y
Sbjct: 165 EAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREAKLVLDRVEEKDVVLITALIVGY 224

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           +      +A++ F  M + + +P+  ++   L       ++  GK IHG + K GF+  +
Sbjct: 225 SQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNLKDIGNGKLIHGLMVKSGFE-SA 283

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           +  Q++L  MY +C++++ S+ VF+     +     SL++ L+ +G  + A+  F  M+ 
Sbjct: 284 LASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSLISGLVQNGREETALIEFRKMMR 343

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
           + +  +  TLS+ L+  S  A    G  R +H    K GF+ +      L++ Y +CG  
Sbjct: 344 DSVKPNSFTLSSALRGCSNLAMFEEG--RQVHGIVSKYGFDRDKYAGSGLIELYGKCGCS 401

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528
           +++  VF+ +   +V+   +++  Y++NG GREAL++ E MI  GL P+ VT L VL  C
Sbjct: 402 DMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFERMINLGLQPNDVTVLSVLLAC 461

Query: 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMM 588
           N+SG+V+EG  +F+S +    I     HY+CM+DMLGRAG L++AE L+ +     D ++
Sbjct: 462 NNSGLVEEGCELFDSFRK-DKIMLTNDHYACMVDMLGRAGRLEEAEMLITEVT-NPDLVL 519

Query: 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648
           W +LL +C+VH    +  R+   ++E+ P D      +SN Y+  G+++  ++++     
Sbjct: 520 WRTLLSACKVHRKVEMAERITRKILEIAPGDEGTLILLSNLYASTGKWKRVIEMKSKMKE 579

Query: 649 RKLTRDIGHSLIEVN 663
            KL ++   S +E++
Sbjct: 580 MKLKKNPAMSWVEID 594



 Score =  159 bits (401), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 110/448 (24%), Positives = 220/448 (49%), Gaps = 5/448 (1%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           S ++ +D  +K G +  A++LFD MP R +VT+N +I+   K R  K+A+ +Y  M+S+ 
Sbjct: 83  SGSKLVDASLKCGEIGYARQLFDGMPERHIVTWNSIIAYYIKHRRSKEAVEMYRLMISNN 142

Query: 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRA 164
           +     T SSV    S+     E  + H   + LG  + N+++GS LVD+Y++ G +  A
Sbjct: 143 VLPDEYTLSSVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALVDMYVKFGKTREA 202

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             + D + E+++     ++  + +     E ++ +  M  E V+PN  ++  ++  C   
Sbjct: 203 KLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEYTYASVLISCGNL 262

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
             +  GK +H  ++K G+ +  +    +L+  Y  C  + ++   F  I   + ++W S+
Sbjct: 263 KDIGNGKLIHGLMVKSGF-ESALASQTSLLTMYLRCSLVDDSLLVFKCIKYPNQVTWTSL 321

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
           +S          AL  F +M     +P+  +    L   S       G+Q+HG V+K GF
Sbjct: 322 ISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGRQVHGIVSKYGF 381

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFG 404
           D    +  S L ++YGKC   + +  VF++     +   N+++ S   +G  ++A+E+F 
Sbjct: 382 DRDK-YAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQNGFGREALELFE 440

Query: 405 FMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464
            M++ G+  ++VT+ + L A + S     G C L           +N   +C ++D   R
Sbjct: 441 RMINLGLQPNDVTVLSVLLACNNSGLVEEG-CELFDSFRKDKIMLTNDHYAC-MVDMLGR 498

Query: 465 CGHIELSHQVFEKIPSPNVVCFTSIMNG 492
            G +E +  +  ++ +P++V + ++++ 
Sbjct: 499 AGRLEEAEMLITEVTNPDLVLWRTLLSA 526



 Score =  120 bits (300), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 106/415 (25%), Positives = 183/415 (44%), Gaps = 30/415 (7%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL---------NIYSSNRTI 51
           M+S  +LP   T++       S+    S L L+   Q +  L         N++  +  +
Sbjct: 138 MISNNVLPDEYTLS-------SVFKAFSDLSLEKEAQRSHGLAVILGLEVSNVFVGSALV 190

Query: 52  DDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111
           D +VK G    AK + D +  +D+V    LI G  +     +A+  +  M+   ++ +  
Sbjct: 191 DMYVKFGKTREAKLVLDRVEEKDVVLITALIVGYSQKGEDTEAVKAFQSMLVEKVQPNEY 250

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T++SVL  C N      G  IH  ++  GF   L   + L+ +Y+R      +L +F  +
Sbjct: 251 TYASVLISCGNLKDIGNGKLIHGLMVKSGFESALASQTSLLTMYLRCSLVDDSLLVFKCI 310

Query: 172 PERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231
              N  TW  ++    +  R +  L  + KM  + V+PN  +    +RGCS   + +EG+
Sbjct: 311 KYPNQVTWTSLISGLVQNGREETALIEFRKMMRDSVKPNSFTLSSALRGCSNLAMFEEGR 370

Query: 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADY 291
           Q+H  V K G+ D + +  + L++ Y  CG    A+  FD +   DVIS N+++  YA  
Sbjct: 371 QVHGIVSKYGF-DRDKYAGSGLIELYGKCGCSDMARLVFDTLSEVDVISLNTMIYSYAQN 429

Query: 292 DLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK----LGFDHG 347
               +ALELF RM     +P+  + +  L   + +G V  G ++     K    L  DH 
Sbjct: 430 GFGREALELFERMINLGLQPNDVTVLSVLLACNNSGLVEEGCELFDSFRKDKIMLTNDH- 488

Query: 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
                + + DM G+   +E +  +        L     L  +LL +  +   VEM
Sbjct: 489 ----YACMVDMLGRAGRLEEAEMLITEVTNPDL----VLWRTLLSACKVHRKVEM 535


>gi|125560040|gb|EAZ05488.1| hypothetical protein OsI_27705 [Oryza sativa Indica Group]
          Length = 1165

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/604 (27%), Positives = 299/604 (49%), Gaps = 67/604 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N  S N  +  ++++    +A  LF +MPA++ V+Y  +ISG  K     +A  +Y+
Sbjct: 96  PRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYE 155

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG---------SP 150
           EM           +     V SNA         + RV  L   L ++ G         S 
Sbjct: 156 EM----------PWQWRDPVGSNALMAG-----YLRVGELAMALRVFEGMTVRDVISWSA 200

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           +VD   + G    A  +FD +PERN+ +W  M+R + +     + L ++  M+ EGV+ N
Sbjct: 201 MVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVN 260

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +    +  C+   L  EG Q+H+ +I +G+ +++IF+ ++++  YS  G +++AK++F
Sbjct: 261 TTTLSVALDACAAASLAREGIQIHNLIISMGF-ELDIFLGDSIIIMYSRFGCMVDAKRAF 319

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +   D++SWNS+++ Y  +D++ +A  LF   +L  ++ ++      + FA+R     
Sbjct: 320 DCMQQKDIVSWNSLITGYVQHDMVEEAHVLF---KLMHQKDAVSWTSMVVGFANR----- 371

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
                 G+                          +  SV +FE  P +      ++++S 
Sbjct: 372 ------GW--------------------------MRESVELFEQMPVKDEVAWTAIISSF 399

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           + +G+   AV  F  M  EG   + +  S  L AL+  A  N G  R  H  +I  G+  
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQG--RQAHAYSINMGWVF 457

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           + AV  SL+  Y++CG +  ++ VF  I +P+++   S++  + ++G   +AL +   M 
Sbjct: 458 DSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQ 517

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  P+ VTFL +L GC  +G V++G   F SM+ VYG++ + +HY+CM+D+LGRAG+L
Sbjct: 518 NAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +A E++   P       W++LL +  +H N    +  A  L+E +P D   Y+ +S  +
Sbjct: 578 AEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSRMF 637

Query: 631 SEIG 634
           S  G
Sbjct: 638 SSAG 641



 Score = 73.9 bits (180), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 146/350 (41%), Gaps = 64/350 (18%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+  Y   G L +A+  FD +P  DVISW ++++ YAD   +  A  +F  M   R  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPR-RNA 100

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS--ALTDMYGKCNVIESS 368
           PS  + +          +VY           L +   + +  S  A+     K  ++  +
Sbjct: 101 PSWNALL----------SVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEA 150

Query: 369 VAVFESAP--GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
             V+E  P   R     N+LM   L  G +  A+ +F     EG+ + +V          
Sbjct: 151 ELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVF-----EGMTVRDV---------- 195

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           +S SA                          ++D   + G +  + +VF+ +P  NVV +
Sbjct: 196 ISWSA--------------------------MVDGLCKHGSVSEARRVFDAMPERNVVSW 229

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           TS++ GY + GM R+ L +   M + G+  +  T    L  C  + + +EG  + N + S
Sbjct: 230 TSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIIS 289

Query: 547 VYGIDADRQHYSCMIDMLGRAGIL---DKAEELLQQTPGGGDCMMWSSLL 593
           + G + D      +I M  R G +    +A + +QQ     D + W+SL+
Sbjct: 290 M-GFELDIFLGDSIIIMYSRFGCMVDAKRAFDCMQQK----DIVSWNSLI 334


>gi|125602089|gb|EAZ41414.1| hypothetical protein OsJ_25936 [Oryza sativa Japonica Group]
          Length = 1165

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/604 (27%), Positives = 299/604 (49%), Gaps = 67/604 (11%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ N  S N  +  ++++    +A  LF +MPA++ V+Y  +ISG  K     +A  +Y+
Sbjct: 96  PRRNAPSWNALLSVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEAELVYE 155

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG---------SP 150
           EM           +     V SNA         + RV  L   L ++ G         S 
Sbjct: 156 EM----------PWQWRDPVGSNALMAG-----YLRVGELAMALRVFEGMTVRDVISWSA 200

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           +VD   + G    A  +FD +PERN+ +W  M+R + +     + L ++  M+ EGV+ N
Sbjct: 201 MVDGLCKHGSVSEARRVFDAMPERNVVSWTSMIRGYVKRGMCRDGLLLFLNMRREGVQVN 260

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +    +  C+   L  EG Q+H+ +I +G+ +++IF+ ++++  YS  G +++AK++F
Sbjct: 261 TTTLSVALDACAAASLAREGIQIHNLIISMGF-ELDIFLGDSIIIMYSRFGWMVDAKRAF 319

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY 330
           D +   D++SWNS+++ Y  +D++ +A  LF   +L  ++ ++      + FA+R     
Sbjct: 320 DCMQQKDIVSWNSLITGYVQHDMVEEAHVLF---KLMHQKDAVSWTSMVVGFANR----- 371

Query: 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390
                 G+                          +  SV +FE  P +      ++++S 
Sbjct: 372 ------GW--------------------------MRESVELFEQMPVKDEVAWTAIISSF 399

Query: 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450
           + +G+   AV  F  M  EG   + +  S  L AL+  A  N G  R  H  +I  G+  
Sbjct: 400 ITNGDYLSAVRWFCRMSQEGCKPNTIAFSCLLSALASLAMLNQG--RQAHAYSINMGWVF 457

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           + AV  SL+  Y++CG +  ++ VF  I +P+++   S++  + ++G   +AL +   M 
Sbjct: 458 DSAVHTSLVSMYAKCGRLAEAYHVFSSISNPSLIAINSMITAFVQHGFVEDALKLFTKMQ 517

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  P+ VTFL +L GC  +G V++G   F SM+ VYG++ + +HY+CM+D+LGRAG+L
Sbjct: 518 NAGYKPNHVTFLGILTGCARAGFVQQGYNYFESMRPVYGVEPNPEHYTCMVDLLGRAGLL 577

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
            +A E++   P       W++LL +  +H N    +  A  L+E +P D   Y+ +S  +
Sbjct: 578 AEALEMINSMPQNDHSDAWAALLSASSLHSNLAFAKIAAQKLLEKDPYDATAYTVLSRMF 637

Query: 631 SEIG 634
           S  G
Sbjct: 638 SSAG 641



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 146/350 (41%), Gaps = 64/350 (18%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NAL+  Y   G L +A+  FD +P  DVISW ++++ YAD   +  A  +F  M   R  
Sbjct: 42  NALLTSYGRRGRLRDAQLLFDQMPSRDVISWTALLTAYADGGDLASARLVFDDMPR-RNA 100

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS--ALTDMYGKCNVIESS 368
           PS  + +          +VY           L +   + +  S  A+     K  ++  +
Sbjct: 101 PSWNALL----------SVYLRAARPRAAHALFYKMPAKNAVSYGAIISGLAKAEMLHEA 150

Query: 369 VAVFESAP--GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
             V+E  P   R     N+LM   L  G +  A+ +F     EG+ + +V          
Sbjct: 151 ELVYEEMPWQWRDPVGSNALMAGYLRVGELAMALRVF-----EGMTVRDV---------- 195

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
           +S SA                          ++D   + G +  + +VF+ +P  NVV +
Sbjct: 196 ISWSA--------------------------MVDGLCKHGSVSEARRVFDAMPERNVVSW 229

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
           TS++ GY + GM R+ L +   M + G+  +  T    L  C  + + +EG  + N + S
Sbjct: 230 TSMIRGYVKRGMCRDGLLLFLNMRREGVQVNTTTLSVALDACAAASLAREGIQIHNLIIS 289

Query: 547 VYGIDADRQHYSCMIDMLGRAGIL---DKAEELLQQTPGGGDCMMWSSLL 593
           + G + D      +I M  R G +    +A + +QQ     D + W+SL+
Sbjct: 290 M-GFELDIFLGDSIIIMYSRFGWMVDAKRAFDCMQQK----DIVSWNSLI 334


>gi|449463631|ref|XP_004149535.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 181/651 (27%), Positives = 321/651 (49%), Gaps = 85/651 (13%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +IYS    I  + + G L  A++LF+ +P  +D V  N LI+G  K R  ++A  L+DEM
Sbjct: 107 DIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM 166

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQI-----HCRVLSLGFGLNLYIG-------- 148
           +   +     +++S+LS  +  G    G+Q         V+S    ++ Y+G        
Sbjct: 167 LVKNV----VSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAW 222

Query: 149 -------SPLVDLYMRM-------GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
                  +P V  ++ M       G    A +LF+E+P +NL +WN M+ A+   ++ D+
Sbjct: 223 MFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDD 282

Query: 195 VLRMYNKMKAEGVEPNGLSFCYMVRG-CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
             +++ +M     E + +S+  M+ G   +G LL   + L+    K      NI    A+
Sbjct: 283 AYKLFMEMP----EKDSVSWTAMINGYVRVGKLLQAREILNLMPYK------NIAAQTAM 332

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           ++ Y   G + EA + F  I V D + WNS+++ YA      +AL LF  M +C+   S 
Sbjct: 333 INGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM-VCKDMVSW 391

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            + +                                         Y +   ++ ++ +F 
Sbjct: 392 NTMIA---------------------------------------AYAQAGQMDKALEMFN 412

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
               R++   NSL+T  + +G   +A+  F  M  +G   D+ T+   L+A +  A+ N+
Sbjct: 413 EMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNV 472

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G    LH   IK+GF +++ V  +++  Y++ G +  +  VF +I + +VV + S++ GY
Sbjct: 473 GV--QLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGY 530

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
           + NG G+EA+++ EVM  RG+IPD+VTF  +L+ CNH G V +G  +F SM   Y I   
Sbjct: 531 ALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQ 590

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
            +HY+C+I++LGR G L++A E++Q         +W +LL +CR+H N  + +  A  L+
Sbjct: 591 SEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLL 650

Query: 614 ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            LEP + + Y  +SN ++E G +++  ++R      K  +  G S IE+++
Sbjct: 651 ALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDN 701



 Score =  116 bits (291), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 51/386 (13%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N+ S    +  F   G +  A+ LF+EMP +++V++N +I    +      A  L+ 
Sbjct: 229 PTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFM 288

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR-VLSLGFGLNLYIGSPLVDLYMRM 158
           EM     K+S S  + +       G+   G  +  R +L+L    N+   + +++ Y++ 
Sbjct: 289 EMPE---KDSVSWTAMI------NGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS 339

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A ++F ++  R+   WN M+  +    R DE LR++ +M  + +           
Sbjct: 340 GRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDM----------- 388

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
                                + W        N ++  Y+  G + +A + F+ +   +V
Sbjct: 389 ---------------------VSW--------NTMIAAYAQAGQMDKALEMFNEMQERNV 419

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWNS+++ Y    L F+AL  F  M+   ++P   + V  L  ++    +  G Q+H  
Sbjct: 420 VSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHL 479

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K GF +  + V++A+  MY K   +  +  VF     + +   NSL+     +G  K+
Sbjct: 480 TIKTGFGN-DLFVKNAILTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKE 538

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKA 424
           AVE+F  M   GI  DEVT +  L A
Sbjct: 539 AVELFEVMPLRGIIPDEVTFTGLLSA 564



 Score =  108 bits (270), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 166/360 (46%), Gaps = 30/360 (8%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALY 96
           P  N+ S N  I  +V+   ++ A KLF EMP +D V++  +I+G    GK    ++ L 
Sbjct: 260 PTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILN 319

Query: 97  L--YDEMVSHG-----------IKESASTFSSVL---SVCSNAGFYTEGIQIHC------ 134
           L  Y  + +             + E+   FS +    SVC N+         HC      
Sbjct: 320 LMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYA---HCGRTDEA 376

Query: 135 -RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            R+       ++   + ++  Y + G   +AL++F+E+ ERN+ +WN ++  + +     
Sbjct: 377 LRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYF 436

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           E L  +  MK +G +P+  +    +R  +    L+ G QLH   IK G+ + ++FV NA+
Sbjct: 437 EALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGN-DLFVKNAI 495

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +  Y+  G + EA+  F  I   DV+SWNS+++ YA      +A+ELF  M L    P  
Sbjct: 496 LTMYAKSGRVPEAENVFAEIKNKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDE 555

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            +F   L+  +  G V  G  +   +T+           + + ++ G+   +E +V + +
Sbjct: 556 VTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQ 615



 Score = 84.7 bits (208), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 179/421 (42%), Gaps = 66/421 (15%)

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           I  L   G+   +  + L   + NI   N+++  Y+  G +  A++ FD +P  +++SWN
Sbjct: 22  ISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S+++ Y   +L+ DA  LF RM     +  I S+   +   +R G +   +++   +   
Sbjct: 82  SMIAGYLHNELVEDAARLFDRM----FKRDIYSWTLMITCYTRIGELEKARELFNLLP-- 135

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D      ++AL   Y K  +   +  +F+    +++   NS+++    +G ++  ++ 
Sbjct: 136 --DKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQF 193

Query: 403 F-----------GFMVDEGIGLDEV-----------TLSTTLKALSVSASANLGSCRLLH 440
           F             MVD  +G+ ++           T +       +S  A+ G  R+  
Sbjct: 194 FEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYG--RMTE 251

Query: 441 CCAIKSGFESNIAVSCSLM-DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
              + +   +   VS + M  AY R   I+ ++++F ++P  + V +T+++NGY R G  
Sbjct: 252 ARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKL 311

Query: 500 REALDMLEVMIQRGL---------------------------IPDKVTFLCVLAGCNHSG 532
            +A ++L +M  + +                           + D V +  ++ G  H G
Sbjct: 312 LQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCG 371

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
              E   +F  M     +  D   ++ MI    +AG +DKA E+  +     + + W+SL
Sbjct: 372 RTDEALRLFQEM-----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQ-ERNVVSWNSL 425

Query: 593 L 593
           +
Sbjct: 426 I 426



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/333 (20%), Positives = 128/333 (38%), Gaps = 75/333 (22%)

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V  +G     V  Q+      G+   IE +VAVF     R++   NS++++   +G I +
Sbjct: 5   VKSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLQMTERNIVTYNSMISAYAKNGRIAN 64

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A E+F  M    +      ++  L    V  +A L              F+ +I     +
Sbjct: 65  ARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARL----------FDRMFKRDIYSWTLM 114

Query: 459 MDAYSRCGHIELSHQVFEKIPS--------------------------------PNVVCF 486
           +  Y+R G +E + ++F  +P                                  NVV +
Sbjct: 115 ITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSW 174

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLI---------------------------PDKV 519
            SI++GY++NG  +  L   E M +R ++                           P+ V
Sbjct: 175 NSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVV 234

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +++ +L+G  H G + E + +FN M +      +   ++ MI    R   +D A +L  +
Sbjct: 235 SWVTMLSGFAHYGRMTEARNLFNEMPT-----KNLVSWNAMIGAYVRENQIDDAYKLFME 289

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL 612
            P   D + W++++      G  +  R + N++
Sbjct: 290 MP-EKDSVSWTAMINGYVRVGKLLQAREILNLM 321


>gi|449469198|ref|XP_004152308.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
 gi|449484855|ref|XP_004156999.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g37170-like [Cucumis sativus]
          Length = 724

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 150/509 (29%), Positives = 273/509 (53%), Gaps = 41/509 (8%)

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
            C  SR  E +++  +++    +P    +  +++ C     L EGKQ+H+H+   G   +
Sbjct: 98  LCGQSRLREAVQLLYRIE----KPYASIYLTLLKFCLKQRALKEGKQVHAHIKTSG--SI 151

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA---------------- 289
            ++++N L+D Y+ CGSL++A+K FD +   D+ SWN ++S Y                 
Sbjct: 152 GLYISNRLLDMYAKCGSLVDAEKVFDEMVHRDLCSWNIMISGYVKGGNFEKARNLFDKMP 211

Query: 290 ---------------DYDLIFDALELFFRMQLCRKRPSIR-SFVEFLNFASRTGNVYFGK 333
                           ++   +ALEL+  MQ      S + +    L  ++   +++ GK
Sbjct: 212 NRDNFSWTAIISGCVQHNRPEEALELYRLMQKHDYSKSNKCTISSALAASAAIPSLHMGK 271

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           +IHG++ ++G D   V V  +L DMYGKC  IE +  +F+    R +    +++ + L +
Sbjct: 272 KIHGHIMRMGLDSDEV-VWCSLLDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKN 330

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G  ++   +F  +++  I  ++ T +  L A +  A+ +LG  + +H   ++ GF+S  +
Sbjct: 331 GRREEGFALFRHLMNSNIMPNDFTFAGVLNACADLAAEDLG--KQIHAYMVRVGFDSFSS 388

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
            + +L+  YS+CG IE +  VFE +P P++  +TS++ GY+++G   +AL   E++++ G
Sbjct: 389 AASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSG 448

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
             PD + F+ VL+ C H+G+V +G   F+S+K  +G+     HY+C+ID+L RAG   +A
Sbjct: 449 TKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEA 508

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
           E ++ + P   D  +W++LL  CR+HGN  + +R A  L E+EP + A Y  ++N Y+  
Sbjct: 509 ESIINEMPIKPDKYIWAALLGGCRIHGNLELAKRAAKSLFEIEPENPATYVTLANIYASA 568

Query: 634 GEFEVSMQIRETALARKLTRDIGHSLIEV 662
           G       IRET  +R + +  G S IE+
Sbjct: 569 GMRAEEANIRETMDSRGIVKKPGMSWIEI 597



 Score =  138 bits (348), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 89/300 (29%), Positives = 152/300 (50%), Gaps = 9/300 (3%)

Query: 46  SSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG 105
           S N  I  +VK G+   A+ LFD+MP RD  ++  +ISGC +   P++AL LY  M  H 
Sbjct: 186 SWNIMISGYVKGGNFEKARNLFDKMPNRDNFSWTAIISGCVQHNRPEEALELYRLMQKHD 245

Query: 106 I-KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
             K +  T SS L+  +       G +IH  ++ +G   +  +   L+D+Y + G    A
Sbjct: 246 YSKSNKCTISSALAASAAIPSLHMGKKIHGHIMRMGLDSDEVVWCSLLDMYGKCGSIEEA 305

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
             +FD++ ER++ +W  M+  + +  R +E   ++  +    + PN  +F  ++  C+  
Sbjct: 306 RYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPNDFTFAGVLNACADL 365

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              D GKQ+H++++++G+ D     A+ALV  YS CG +  AK  F+ +P  D+ SW S+
Sbjct: 366 AAEDLGKQIHAYMVRVGF-DSFSSAASALVHMYSKCGDIENAKSVFEILPQPDLFSWTSL 424

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFG--KQIHG 337
           +  YA +     AL  F  +     +P   +F+  L+  +  G V     YF   K+ HG
Sbjct: 425 LVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKGLEYFHSIKEKHG 484



 Score = 94.0 bits (232), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 59/259 (22%), Positives = 126/259 (48%), Gaps = 4/259 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D + K G +  A+ +FD+M  RD+V++  +I    K    ++   L+  +++  I  + 
Sbjct: 293 LDMYGKCGSIEEARYIFDKMEERDVVSWTTMIHTYLKNGRREEGFALFRHLMNSNIMPND 352

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF+ VL+ C++      G QIH  ++ +GF       S LV +Y + G    A  +F+ 
Sbjct: 353 FTFAGVLNACADLAAEDLGKQIHAYMVRVGFDSFSSAASALVHMYSKCGDIENAKSVFEI 412

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           LP+ +L +W  +L  + +  + D+ L  +  +   G +P+G++F  ++  C+   L+D+G
Sbjct: 413 LPQPDLFSWTSLLVGYAQHGQHDKALHFFELLLKSGTKPDGIAFIGVLSACAHAGLVDKG 472

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS--- 286
            +    + +   +   I     ++D  +  G   EA+   + +P+  D   W +++    
Sbjct: 473 LEYFHSIKEKHGLTRTIDHYACIIDLLARAGQFTEAESIINEMPIKPDKYIWAALLGGCR 532

Query: 287 IYADYDLIFDALELFFRMQ 305
           I+ + +L   A +  F ++
Sbjct: 533 IHGNLELAKRAAKSLFEIE 551


>gi|238478502|ref|NP_173097.2| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191338|gb|AEE29459.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 937

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/593 (27%), Positives = 306/593 (51%), Gaps = 15/593 (2%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+++ A  +FD+M  RD +++N + +   +  H +++  ++  M     + +++T S++L
Sbjct: 209 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 268

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           SV  +      G  IH  V+ +GF   + + + L+ +Y   G SV A  +F ++P ++L 
Sbjct: 269 SVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 328

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN ++ +F    R  + L +   M + G   N ++F   +  C      ++G+ LH  V
Sbjct: 329 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 388

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +  G +  N  + NALV  Y   G + E+++    +P  DV++WN+++  YA+ +    A
Sbjct: 389 VVSG-LFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKA 447

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY-FGKQIHGYVTKLGFDHGSVHVQSALT 356
           L  F  M++     +  + V  L+     G++   GK +H Y+   GF+    HV+++L 
Sbjct: 448 LAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE-HVKNSLI 506

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY KC  + SS  +F     R++   N+++ +  H G+ ++ +++   M   G+ LD+ 
Sbjct: 507 TMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQF 566

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE-----LS 471
           + S  L A   +  A L   + LH  A+K GFE +  +  +  D YS+CG I      L 
Sbjct: 567 SFSEGLSA--AAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 624

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             V   +PS N+     +++   R+G   E       M++ G+ P  VTF+ +L  C+H 
Sbjct: 625 PSVNRSLPSWNI-----LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 679

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V +G   ++ +   +G++   +H  C+ID+LGR+G L +AE  + + P   + ++W S
Sbjct: 680 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 739

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           LL SC++HGN   GR+ A  L +LEP D +VY   SN ++  G +E    +R+
Sbjct: 740 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRK 792



 Score =  216 bits (550), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 149/552 (26%), Positives = 277/552 (50%), Gaps = 12/552 (2%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G +  A+ LFD MP R+ V++N ++SG  +     + +  + +M   GIK S+   
Sbjct: 2   YTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVI 61

Query: 114 SSVLSVCSNAG-FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP 172
           +S+++ C  +G  + EG+Q+H  V   G   ++Y+ + ++ LY   G    +  +F+E+P
Sbjct: 62  ASLVTACGRSGSMFREGVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMP 121

Query: 173 ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--G 230
           +RN+ +W  ++  + +   P+EV+ +Y  M+ EGV  N  S   ++  C  G+L DE  G
Sbjct: 122 DRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC--GLLKDESLG 179

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           +Q+   V+K G ++  + V N+L+    + G++  A   FD +   D ISWNSI + YA 
Sbjct: 180 RQIIGQVVKSG-LESKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 238

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
              I ++  +F  M+      +  +    L+      +  +G+ IHG V K+GFD   V 
Sbjct: 239 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFD-SVVC 297

Query: 351 VQSALTDMY-GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
           V + L  MY G    +E+++ VF+  P + L   NSLM S ++ G   DA+ +   M+  
Sbjct: 298 VCNTLLRMYAGAGRSVEANL-VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISS 356

Query: 410 GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           G  ++ VT ++ L A         G  R+LH   + SG   N  +  +L+  Y + G + 
Sbjct: 357 GKSVNYVTFTSALAACFTPDFFEKG--RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMS 414

Query: 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
            S +V  ++P  +VV + +++ GY+ +    +AL   + M   G+  + +T + VL+ C 
Sbjct: 415 ESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACL 474

Query: 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
             G + E     ++     G ++D    + +I M  + G L  +++L        + + W
Sbjct: 475 LPGDLLERGKPLHAYIVSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITW 533

Query: 590 SSLLRSCRVHGN 601
           +++L +   HG+
Sbjct: 534 NAMLAANAHHGH 545



 Score =  170 bits (431), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/541 (24%), Positives = 257/541 (47%), Gaps = 16/541 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y S   +  +   G ++ ++K+F+EMP R++V++  L+ G      P++ + +Y  M 
Sbjct: 93  DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMR 152

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  + ++ S V+S C      + G QI  +V+  G    L + + L+ +   MG   
Sbjct: 153 GEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVD 212

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD++ ER+  +WN +  A+ +    +E  R+++ M+    E N  +   ++    
Sbjct: 213 YANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLG 272

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  G+ +H  V+K+G+ D  + V N L+  Y+  G  +EA   F  +P  D+ISWN
Sbjct: 273 HVDHQKWGRGIHGLVVKMGF-DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWN 331

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF------GKQIH 336
           S+++ + +     DAL L     LC    S +S V ++ F S     +       G+ +H
Sbjct: 332 SLMASFVNDGRSLDALGL-----LCSMISSGKS-VNYVTFTSALAACFTPDFFEKGRILH 385

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G V   G  +  + + +AL  MYGK   +  S  V    P R +   N+L+       + 
Sbjct: 386 GLVVVSGLFYNQI-IGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDP 444

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
             A+  F  M  EG+  + +T+ + L A  +     L   + LH   + +GFES+  V  
Sbjct: 445 DKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL-LERGKPLHAYIVSAGFESDEHVKN 503

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+  Y++CG +  S  +F  + + N++ + +++   + +G G E L ++  M   G+  
Sbjct: 504 SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL 563

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D+ +F   L+      +++EGQ + + +    G + D   ++   DM  + G + +  ++
Sbjct: 564 DQFSFSEGLSAAAKLAVLEEGQQL-HGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 622

Query: 577 L 577
           L
Sbjct: 623 L 623



 Score =  144 bits (362), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 107/441 (24%), Positives = 214/441 (48%), Gaps = 7/441 (1%)

Query: 154 LYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213
           +Y + G    A  LFD +P RN  +WN M+     +    E +  + KM   G++P+   
Sbjct: 1   MYTKFGRVKPARHLFDIMPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFV 60

Query: 214 FCYMVRGCS-IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
              +V  C   G +  EG Q+H  V K G +  +++V+ A++  Y   G +  ++K F+ 
Sbjct: 61  IASLVTACGRSGSMFREGVQVHGFVAKSGLLS-DVYVSTAILHLYGVYGLVSCSRKVFEE 119

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +P  +V+SW S++  Y+D     + ++++  M+      +  S    ++      +   G
Sbjct: 120 MPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMRGEGVGCNENSMSLVISSCGLLKDESLG 179

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           +QI G V K G +   + V+++L  M G    ++ +  +F+    R     NS+  +   
Sbjct: 180 RQIIGQVVKSGLE-SKLAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQ 238

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
           +G+I+++  +F  M      ++  T+ST L  L        G  R +H   +K GF+S +
Sbjct: 239 NGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLGHVDHQKWG--RGIHGLVVKMGFDSVV 296

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
            V  +L+  Y+  G    ++ VF+++P+ +++ + S+M  +  +G   +AL +L  MI  
Sbjct: 297 CVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISS 356

Query: 513 GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572
           G   + VTF   LA C      ++G+ + + +  V G+  ++   + ++ M G+ G + +
Sbjct: 357 GKSVNYVTFTSALAACFTPDFFEKGR-ILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSE 415

Query: 573 AEELLQQTPGGGDCMMWSSLL 593
           +  +L Q P   D + W++L+
Sbjct: 416 SRRVLLQMP-RRDVVAWNALI 435


>gi|147816454|emb|CAN77435.1| hypothetical protein VITISV_017817 [Vitis vinifera]
          Length = 601

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 155/500 (31%), Positives = 268/500 (53%), Gaps = 6/500 (1%)

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
           L LFD L    +  WN ++R F   S+P  VL  Y++++  GV P+  +F  +++  S  
Sbjct: 58  LLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGVIPDRHTFPLLLKAFS-- 115

Query: 225 MLLDEGK-QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
            L +E   Q ++H++K G +D + FV N+LV  ++ CG +  +++ F      DV+SW +
Sbjct: 116 KLRNENPFQFYAHIVKFG-LDFDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTA 174

Query: 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343
           +++         +ALE F  M+         + V  L  A+   +V+FG+ +HG+  + G
Sbjct: 175 LINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVLCAAAMLRDVWFGRWVHGFYVESG 234

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF 403
                V+V SAL DMY KC   + +V VF   P R+L    +L+   +     K+A+++F
Sbjct: 235 RVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVF 294

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             M+ EGI  ++ T+++ L A +   S + G  R LH    +S    N  +  +L+D YS
Sbjct: 295 QEMIIEGIEPNQSTVTSALTACAQLGSLDQG--RWLHEYVDRSKLGLNSKLGTALVDMYS 352

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           +CG ++ +  VFEK+P+ +V  +T+++NG +  G    +L++   MI+  + P+ VTFL 
Sbjct: 353 KCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLG 412

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL+ C H G+V EG  +F  M   Y ++ +  HY CM+D+LGRAG L++A + ++  P  
Sbjct: 413 VLSACAHGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPME 472

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W +L   C +H    +G  + N L++L+P     Y  ++N YS   ++E +  +R
Sbjct: 473 PTPGVWGALFSGCMIHKAFELGEHIGNHLIKLQPHHSGRYILLANLYSRCQKWEAAANVR 532

Query: 644 ETALARKLTRDIGHSLIEVN 663
                + + +  G S IEVN
Sbjct: 533 RLMKGKGVDKSPGCSWIEVN 552



 Score =  145 bits (367), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 103/354 (29%), Positives = 174/354 (49%), Gaps = 38/354 (10%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
            + +  N  +  F   G+++ +++LF E   +D+V++  LI+GC +     +AL  + EM
Sbjct: 136 FDAFVQNSLVSAFAHCGYVDCSRRLFIETAKKDVVSWTALINGCLRNGRAVEALECFVEM 195

Query: 102 VSHGIKESASTFSSVLSVCSNA------------GFYTEGIQIHCRVLSLGFGLNLYIGS 149
            S G++    T  SVL  C+ A            GFY E      RV+      ++Y+GS
Sbjct: 196 RSSGVEVDEVTIVSVL--CAAAMLRDVWFGRWVHGFYVES----GRVI-----WDVYVGS 244

Query: 150 PLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP 209
            LVD+Y + G    A+ +F+E+P RNL +W  ++  + + +R  E L+++ +M  EG+EP
Sbjct: 245 ALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMIIEGIEP 304

Query: 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHV--IKLGWVDVNIFVANALVDFYSACGSLIEAK 267
           N  +    +  C+    LD+G+ LH +V   KLG   +N  +  ALVD YS CG + EA 
Sbjct: 305 NQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLG---LNSKLGTALVDMYSKCGCVDEAL 361

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
             F+ +P  DV  W ++++  A       +L LF +M   R +P+  +F+  L+  +  G
Sbjct: 362 LVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACAHGG 421

Query: 328 NV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
            V      F   I  Y  +   DH        + D+ G+   +E ++   ES P
Sbjct: 422 LVDEGLELFRLMICDYRLEPNVDH-----YGCMVDLLGRAGRLEEAIKFIESMP 470



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 108/453 (23%), Positives = 208/453 (45%), Gaps = 23/453 (5%)

Query: 54  FVKSGHLNSAKK-------LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           F  S  L SA K       LFD +    +  +N +I G      P+  L  Y  + +HG+
Sbjct: 41  FFLSDILRSATKDLGYTLLLFDRLATPYIFLWNTIIRGFSASSQPQMVLVAYSRLRNHGV 100

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
                TF  +L   S         Q +  ++  G   + ++ + LV  +   G    +  
Sbjct: 101 IPDRHTFPLLLKAFSKLR-NENPFQFYAHIVKFGLDFDAFVQNSLVSAFAHCGYVDCSRR 159

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LF E  ++++ +W  ++       R  E L  + +M++ GVE + ++   ++  C+  ML
Sbjct: 160 LFIETAKKDVVSWTALINGCLRNGRAVEALECFVEMRSSGVEVDEVTIVSVL--CAAAML 217

Query: 227 LDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            D   G+ +H   ++ G V  +++V +ALVD YS CG   +A K F+ +P  +++SW ++
Sbjct: 218 RDVWFGRWVHGFYVESGRVIWDVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGAL 277

Query: 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV--TKL 342
           ++ Y   +   +AL++F  M +    P+  +    L   ++ G++  G+ +H YV  +KL
Sbjct: 278 IAGYVQCNRYKEALKVFQEMIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKL 337

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G +     + +AL DMY KC  ++ ++ VFE  P + +    +++  L   G+   ++ +
Sbjct: 338 GLNS---KLGTALVDMYSKCGCVDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNL 394

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLG--SCRLLHCCAIKSGFESNIAVSCSLMD 460
           F  M+   +  + VT    L A +     + G    RL+ C       E N+     ++D
Sbjct: 395 FSQMIRSRVQPNGVTFLGVLSACAHGGLVDEGLELFRLMIC---DYRLEPNVDHYGCMVD 451

Query: 461 AYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
              R G +E + +  E +P  P    + ++ +G
Sbjct: 452 LLGRAGRLEEAIKFIESMPMEPTPGVWGALFSG 484



 Score =  126 bits (317), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 73/245 (29%), Positives = 133/245 (54%), Gaps = 1/245 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y  +  +D + K G+ + A K+F+EMP R++V++  LI+G  +    K+AL ++ EM+
Sbjct: 239 DVYVGSALVDMYSKCGYCDDAVKVFNEMPTRNLVSWGALIAGYVQCNRYKEALKVFQEMI 298

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             GI+ + ST +S L+ C+  G   +G  +H  V     GLN  +G+ LVD+Y + G   
Sbjct: 299 IEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGCVD 358

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            AL +F++LP +++  W  M+            L ++++M    V+PNG++F  ++  C+
Sbjct: 359 EALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSACA 418

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-W 281
            G L+DEG +L   +I    ++ N+     +VD     G L EA K  + +P++     W
Sbjct: 419 HGGLVDEGLELFRLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTPGVW 478

Query: 282 NSIVS 286
            ++ S
Sbjct: 479 GALFS 483



 Score = 58.9 bits (141), Expect = 8e-06,   Method: Compositional matrix adjust.
 Identities = 44/187 (23%), Positives = 84/187 (44%), Gaps = 5/187 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M+   + P   T+T+    C  +  L     L  Y   +   LN       +D + K G 
Sbjct: 297 MIIEGIEPNQSTVTSALTACAQLGSLDQGRWLHEYVDRSKLGLNSKLGTALVDMYSKCGC 356

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A  +F+++PA+D+  +  +I+G         +L L+ +M+   ++ +  TF  VLS 
Sbjct: 357 VDEALLVFEKLPAKDVYPWTAMINGLAMRGDALSSLNLFSQMIRSRVQPNGVTFLGVLSA 416

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNL 176
           C++ G   EG+++  R++   + L  N+     +VDL  R G    A+   + +P E   
Sbjct: 417 CAHGGLVDEGLELF-RLMICDYRLEPNVDHYGCMVDLLGRAGRLEEAIKFIESMPMEPTP 475

Query: 177 ATWNLML 183
             W  + 
Sbjct: 476 GVWGALF 482


>gi|255541480|ref|XP_002511804.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223548984|gb|EEF50473.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 607

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/513 (30%), Positives = 275/513 (53%), Gaps = 9/513 (1%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P+ + +S N  I  +  SG L  AK+LF E P +  +T++ LISG  K+    +A  LY 
Sbjct: 49  PERDEFSWNTMIAAYANSGRLTDAKQLFCEAPLKSSITWSSLISGFCKYEFDIEAFELYL 108

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   G + +  T  S+L +CS  GF  +G +IH   +      N+++ + LVDLY +  
Sbjct: 109 QMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGYAIKTRLDANVFVVTSLVDLYAKCE 168

Query: 160 PSVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
               A  +F+ + + +N ATW  ML  +         ++ +  M+AEGVE N  +F  ++
Sbjct: 169 CISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGFRAIKCFRDMRAEGVESNQFTFPSIL 228

Query: 219 RGCSIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD 276
             C  G + D   G Q+H  +++ G+   NIFV +ALVD Y+ C  L  A +  + + V+
Sbjct: 229 TAC--GAVSDHVFGVQVHGCIVRSGF-GANIFVQSALVDMYAKCRDLNSANRVLENMEVN 285

Query: 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336
           DV+SWNS++          +AL LF  M     +    ++   LN  +   ++   K  H
Sbjct: 286 DVVSWNSMIVGCVREGFEAEALSLFNEMHARDIKIDDYTYPSVLNSFASMKDIQSAKSAH 345

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
             + K GF   ++ V +AL DMY K   ++ +  VF   P + +    SL+T   ++G+ 
Sbjct: 346 CLIIKTGFGAYTL-VNNALVDMYAKQGNLDYAFTVFNQMPDKDVVSWTSLVTGYSYNGSY 404

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
           +DA+++F  M   G+  D++ L++ L A +       G  + +H   +KSG  S++++  
Sbjct: 405 EDAIKLFCDMRIAGVCPDQIVLASVLSACAELTVTEFG--QQVHATILKSGLCSSLSIDN 462

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+  Y++CG IE ++ VF+ +   +V+ +T+++ GY++NG G+++L   + MI  G  P
Sbjct: 463 SLVTMYAKCGGIEDANYVFDSMQIRDVISWTALIVGYAQNGRGKDSLHFYDQMIATGTKP 522

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           D +TF+ +L  C+H+G+V++G+  F SM   YG
Sbjct: 523 DFITFIGLLFACSHTGLVEDGRRYFESMDKEYG 555



 Score =  142 bits (358), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 80/308 (25%), Positives = 161/308 (52%), Gaps = 4/308 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           NI+  +  +D + K   LNSA ++ + M   D+V++N +I GC +     +AL L++EM 
Sbjct: 255 NIFVQSALVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREGFEAEALSLFNEMH 314

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           +  IK    T+ SVL+  ++          HC ++  GFG    + + LVD+Y + G   
Sbjct: 315 ARDIKIDDYTYPSVLNSFASMKDIQSAKSAHCLIIKTGFGAYTLVNNALVDMYAKQGNLD 374

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F+++P++++ +W  ++  +      ++ ++++  M+  GV P+ +    ++  C+
Sbjct: 375 YAFTVFNQMPDKDVVSWTSLVTGYSYNGSYEDAIKLFCDMRIAGVCPDQIVLASVLSACA 434

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
              + + G+Q+H+ ++K G    ++ + N+LV  Y+ CG + +A   FD + + DVISW 
Sbjct: 435 ELTVTEFGQQVHATILKSGLCS-SLSIDNSLVTMYAKCGGIEDANYVFDSMQIRDVISWT 493

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  YA      D+L  + +M     +P   +F+  L   S TG V  G++   Y   +
Sbjct: 494 ALIVGYAQNGRGKDSLHFYDQMIATGTKPDFITFIGLLFACSHTGLVEDGRR---YFESM 550

Query: 343 GFDHGSVH 350
             ++G+ H
Sbjct: 551 DKEYGASH 558



 Score =  139 bits (350), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 107/390 (27%), Positives = 181/390 (46%), Gaps = 49/390 (12%)

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD------------------- 290
           +N  ++  S  G + EA+  FD +P  D  SWN++++ YA+                   
Sbjct: 25  SNQQLNDLSKSGRIDEARHIFDKLPERDEFSWNTMIAAYANSGRLTDAKQLFCEAPLKSS 84

Query: 291 ------------YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
                       Y+   +A EL+ +MQ   +RP+  +    L   SRTG +  G++IHGY
Sbjct: 85  ITWSSLISGFCKYEFDIEAFELYLQMQFEGQRPNHYTLGSILRLCSRTGFLQKGERIHGY 144

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE-SAPGRSLECCNSLMTSLLHSGNIK 397
             K   D  +V V ++L D+Y KC  I  +  +FE  A  ++     +++T   H+G+  
Sbjct: 145 AIKTRLD-ANVFVVTSLVDLYAKCECISEAEYIFEMVADSKNHATWTAMLTGYSHNGDGF 203

Query: 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            A++ F  M  EG+  ++ T  + L A    +    G    +H C ++SGF +NI V  +
Sbjct: 204 RAIKCFRDMRAEGVESNQFTFPSILTACGAVSDHVFGV--QVHGCIVRSGFGANIFVQSA 261

Query: 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517
           L+D Y++C  +  +++V E +   +VV + S++ G  R G   EAL +   M  R +  D
Sbjct: 262 LVDMYAKCRDLNSANRVLENMEVNDVVSWNSMIVGCVREGFEAEALSLFNEMHARDIKID 321

Query: 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY------GIDADRQHYSCMIDMLGRAGILD 571
             T+  VL   N    +K+ Q    S KS +      G  A     + ++DM  + G LD
Sbjct: 322 DYTYPSVL---NSFASMKDIQ----SAKSAHCLIIKTGFGAYTLVNNALVDMYAKQGNLD 374

Query: 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
            A  +  Q P   D + W+SL+     +G+
Sbjct: 375 YAFTVFNQMP-DKDVVSWTSLVTGYSYNGS 403


>gi|356529924|ref|XP_003533536.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 694

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 157/523 (30%), Positives = 287/523 (54%), Gaps = 14/523 (2%)

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA-EGV 207
           + LV LY++ G    A +LFD +P RN+ +WN+++  +       EVL ++  M + +  
Sbjct: 54  NSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLVLFKNMVSLQNA 113

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            PN   F   +  CS G  + EG Q H  + K G V  + +V +ALV  YS C  +  A 
Sbjct: 114 CPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLV-CHQYVKSALVHMYSRCSHVELAL 172

Query: 268 KSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFA 323
           +  D +P   V+D+ S+NS+++   +     +A+E+  RM   C     + ++V  +   
Sbjct: 173 QVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHV-TYVGVMGLC 231

Query: 324 SRTGNVYFGKQIHGYVTKLG--FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
           ++  ++  G ++H  + + G  FD     V S L DMYGKC  + ++  VF+    R++ 
Sbjct: 232 AQIRDLQLGLRVHARLLRGGLMFDE---FVGSMLIDMYGKCGEVLNARNVFDGLQNRNVV 288

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
              +LMT+ L +G  ++++ +F  M  EG   +E T +  L A +  A+   G   LLH 
Sbjct: 289 VWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHGD--LLHA 346

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
              K GF++++ V  +L++ YS+ G I+ S+ VF  +   +++ + +++ GYS +G+G++
Sbjct: 347 RVEKLGFKNHVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSHHGLGKQ 406

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           AL + + M+     P+ VTF+ VL+  +H G+VKEG    N +   + I+   +HY+CM+
Sbjct: 407 ALQVFQDMVSAEECPNYVTFIGVLSAYSHLGLVKEGFYYLNHLMRNFKIEPGLEHYTCMV 466

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621
            +L RAG+LD+AE  ++ T    D + W +LL +C VH N  +GRR+A  +++++P D  
Sbjct: 467 ALLSRAGLLDEAENFMKTTQVKWDVVAWRTLLNACHVHRNYDLGRRIAESVLQMDPHDVG 526

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            Y+ +SN Y++   ++  + IR+    R + ++ G S +++ +
Sbjct: 527 TYTLLSNMYAKARRWDGVVTIRKLMRERNIKKEPGASWLDIRN 569



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 111/394 (28%), Positives = 194/394 (49%), Gaps = 6/394 (1%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q +   +I   N  +  +VK G L  A+ LFD MP R++V++N+L++G     +  + L 
Sbjct: 43  QTSNHSHISHLNSLVHLYVKCGQLGLARNLFDAMPLRNVVSWNVLMAGYLHGGNHLEVLV 102

Query: 97  LYDEMVS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
           L+  MVS      +   F++ LS CS+ G   EG+Q H  +   G   + Y+ S LV +Y
Sbjct: 103 LFKNMVSLQNACPNEYVFTTALSACSHGGRVKEGMQCHGLLFKFGLVCHQYVKSALVHMY 162

Query: 156 MRMGPSVRALDLFDELPER---NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
            R      AL + D +P     ++ ++N +L A  E  R +E + +  +M  E V  + +
Sbjct: 163 SRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRMVDECVAWDHV 222

Query: 213 SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           ++  ++  C+    L  G ++H+ +++ G +  + FV + L+D Y  CG ++ A+  FD 
Sbjct: 223 TYVGVMGLCAQIRDLQLGLRVHARLLR-GGLMFDEFVGSMLIDMYGKCGEVLNARNVFDG 281

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +   +V+ W ++++ Y       ++L LF  M      P+  +F   LN  +    +  G
Sbjct: 282 LQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNACAGIAALRHG 341

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
             +H  V KLGF +  + V++AL +MY K   I+SS  VF     R +   N+++    H
Sbjct: 342 DLLHARVEKLGFKNHVI-VRNALINMYSKSGSIDSSYNVFTDMIYRDIITWNAMICGYSH 400

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            G  K A+++F  MV      + VT    L A S
Sbjct: 401 HGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYS 434



 Score =  128 bits (321), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/393 (24%), Positives = 178/393 (45%), Gaps = 38/393 (9%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYLYDEM 101
           Y  +  +  + +  H+  A ++ D +P     D+ +YN +++   +    ++A+ +   M
Sbjct: 153 YVKSALVHMYSRCSHVELALQVLDTVPGEHVNDIFSYNSVLNALVESGRGEEAVEVLRRM 212

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V   +     T+  V+ +C+       G+++H R+L  G   + ++GS L+D+Y + G  
Sbjct: 213 VDECVAWDHVTYVGVMGLCAQIRDLQLGLRVHARLLRGGLMFDEFVGSMLIDMYGKCGEV 272

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
           + A ++FD L  RN+  W  ++ A+ +    +E L ++  M  EG  PN  +F  ++  C
Sbjct: 273 LNARNVFDGLQNRNVVVWTALMTAYLQNGYFEESLNLFTCMDREGTLPNEYTFAVLLNAC 332

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +    L  G  LH+ V KLG+ + ++ V NAL++ YS  GS+  +   F  +   D+I+W
Sbjct: 333 AGIAALRHGDLLHARVEKLGFKN-HVIVRNALINMYSKSGSIDSSYNVFTDMIYRDIITW 391

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  Y+ + L   AL++F  M    + P+  +F+  L+  S  G           + K
Sbjct: 392 NAMICGYSHHGLGKQALQVFQDMVSAEECPNYVTFIGVLSAYSHLG-----------LVK 440

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
            GF +                  +   +  F+  PG     C   M +LL    + D  E
Sbjct: 441 EGFYY------------------LNHLMRNFKIEPGLEHYTC---MVALLSRAGLLDEAE 479

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
              FM    +  D V   T L A  V  + +LG
Sbjct: 480 --NFMKTTQVKWDVVAWRTLLNACHVHRNYDLG 510


>gi|225459429|ref|XP_002284321.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g20230-like [Vitis vinifera]
          Length = 700

 Score =  260 bits (664), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 170/588 (28%), Positives = 298/588 (50%), Gaps = 30/588 (5%)

Query: 70  MPARDMV----TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           MP R +     ++N +ISGC +  + + AL ++  M+ +    +  T +S+L  C+    
Sbjct: 1   MPERGLQPTVNSWNGIISGCVQNGYLEDALDMFSRMLWYPEDPNIITIASILPACTGLKA 60

Query: 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRA 185
              G  IH   L  G   N+Y+   ++D+Y + G    A  +F +   +N A WN M+ A
Sbjct: 61  LRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKVFVKAENKNTAMWNEMIAA 120

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
           +    + ++ L +   M+ +G +P+ +++  ++ G +   L  +  +L S ++++G +  
Sbjct: 121 YVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLKTQAFELLSEMVQMG-LKP 179

Query: 246 NIFVANALVDFYSACGSLIEAKKSFDFI-PVDDVISWNSIVSIYADYDLIFDALELFFRM 304
           N+   N L+  +   G   EA K F  +    D  + N ++++                 
Sbjct: 180 NVVSFNVLISGFQQSGLSYEALKVFRIMQSPSDGCNPNEVLNL----------------- 222

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364
                RP+  +    L   +       GK+IHGY  + GF+  ++ V SAL DMY KC+ 
Sbjct: 223 ---SMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGFEP-NIFVSSALVDMYAKCHD 278

Query: 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
           ++S+  VF    GR+    N+LM   +++   ++A+++F  M+ EG+    +T      A
Sbjct: 279 MDSANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLGEGLQPSSITFMILFPA 338

Query: 425 LSVSASANLGSCRLLHCCAIKSGF-ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV 483
               A+   G  R LH  A K    E   A++ +L+D Y++CG I  +  VF+     +V
Sbjct: 339 CGDIAAIRFG--RGLHGYAAKCQLDELKNAIASALIDMYAKCGSILDAKSVFDSEVEKDV 396

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
             + ++++ +S +GM R A  +   M   G++PD +TF+ +L+ C   G+V+EG   FNS
Sbjct: 397 PLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVSLLSACARDGLVEEGWKYFNS 456

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M+  YG+ A  +HY+CM+ +LG AG+LD+A + ++Q P   D  MW++LL++CRVH N  
Sbjct: 457 MEISYGVAATLEHYTCMVGILGGAGLLDEALDFIRQMPYPPDACMWATLLQACRVHSNPE 516

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           IG R A  L ELEP +   Y  +SN Y   G ++ +  +R     RKL
Sbjct: 517 IGERAAKALFELEPDNATNYMLLSNIYVSSGMWDFAKNLRSFMRGRKL 564



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 132/571 (23%), Positives = 250/571 (43%), Gaps = 60/571 (10%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P + TI ++ P CT +  L     + +    +  + N+Y     ID + K G  + A+K+
Sbjct: 43  PNIITIASILPACTGLKALRLGKAIHAIALKHGIVGNVYVEGSVIDMYSKCGSYDYAEKV 102

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           F +   ++   +N +I+        + AL L   M   G K    T++++LS  +  G  
Sbjct: 103 FVKAENKNTAMWNEMIAAYVNEGKVEDALGLLRSMQKDGWKPDVITYNTILSGHARNGLK 162

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           T+  ++   ++ +G   N+   + L+  + + G S  AL +F             ++++ 
Sbjct: 163 TQAFELLSEMVQMGLKPNVVSFNVLISGFQQSGLSYEALKVFR------------IMQSP 210

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +   P+EVL +        + PN ++    +  C+   L  +GK++H + ++ G+ + N
Sbjct: 211 SDGCNPNEVLNL-------SMRPNPITITGALPACADLNLWCQGKEIHGYTLRNGF-EPN 262

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           IFV++ALVD Y+ C  +  A K F  I   + +SWN++++ Y       +AL+LF  M  
Sbjct: 263 IFVSSALVDMYAKCHDMDSANKVFFRIDGRNTVSWNALMAGYIYNKQPEEALKLFLEMLG 322

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
              +PS  +F+           + FG+ +HGY  K   D     + SAL DMY KC  I 
Sbjct: 323 EGLQPSSITFMILFPACGDIAAIRFGRGLHGYAAKCQLDELKNAIASALIDMYAKCGSIL 382

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
            + +VF+S   + +   N+++++    G  ++A  +F  M   GI  D +T  +      
Sbjct: 383 DAKSVFDSEVEKDVPLWNAMISAFSVHGMARNAFAVFVQMELLGILPDHITFVS------ 436

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
                      LL  CA     E          + +     +E+S+ V   +   +  C 
Sbjct: 437 -----------LLSACARDGLVE----------EGWKYFNSMEISYGVAATL--EHYTCM 473

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546
             I+ G    G+  EALD +    Q    PD   +  +L  C      + G+    + K+
Sbjct: 474 VGILGG---AGLLDEALDFIR---QMPYPPDACMWATLLQACRVHSNPEIGE---RAAKA 524

Query: 547 VYGIDADR-QHYSCMIDMLGRAGILDKAEEL 576
           ++ ++ D   +Y  + ++   +G+ D A+ L
Sbjct: 525 LFELEPDNATNYMLLSNIYVSSGMWDFAKNL 555


>gi|359474850|ref|XP_002277741.2| PREDICTED: pentatricopeptide repeat-containing protein
           At4g13650-like [Vitis vinifera]
 gi|297744624|emb|CBI37886.3| unnamed protein product [Vitis vinifera]
          Length = 648

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 167/609 (27%), Positives = 316/609 (51%), Gaps = 6/609 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           ++KSG + +A KLF+E+P RD+V+++++I G  +    ++++ L+ +M    +  ++ T 
Sbjct: 36  YLKSGDIINAGKLFEEIPKRDVVSWSIMIHGYNRNGFRRKSMELFSQMRISSLVPTSFTM 95

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
             VL   +  G    G  +H  +L  G   +  + + L++ Y + G  V +  +F++L  
Sbjct: 96  VGVLVSIAGLGDPVLGQCVHGLILKYGLDSDFRVVTALLNAYAKCGNVVDSYRVFEQLEN 155

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
             L + + ++  F      +E + ++N+ +  G+ PN  +   ++R C         + +
Sbjct: 156 PGLVSCSAIVSGFVYNELFEEAVVLFNQFRKLGMVPNAATVLTLIRACVALESRRLCESI 215

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H  V+KL  V +++ V N+++D YS+   L  A + F+ +   DVISW +++++    + 
Sbjct: 216 HGMVVKLSLV-LDVAVNNSVLDMYSSMLDLDAATRVFEGMECRDVISWTTMINLLVCLEY 274

Query: 294 IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353
             DAL LF +M+       +   +  ++  +  G++  G++IH      GF    + + +
Sbjct: 275 ASDALMLFRQMRNTGICNDVVVVMNLISACAILGDLKRGREIHTQAIVCGFG-SELPLTN 333

Query: 354 ALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-DEGIG 412
           ++  MY KC  ++SS  VF+   G+SL    +++   + +G  ++A+++   M  +E   
Sbjct: 334 SIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTAMILGCVQNGYPREALKLLIKMRGEESFY 393

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
           LD + L   L A    A   L  C+ LHC A +SGF     V  SL+ AYS+CG +E ++
Sbjct: 394 LDSIMLIGVLSASGELALLEL--CQQLHCYAFESGFPRYRLVQNSLISAYSKCGDVEPAY 451

Query: 473 QVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            VF ++    ++V + +I+NGY  NG G  A+ +   M +    PD  T+LCVL+ C+HS
Sbjct: 452 NVFGQMGYIRDIVSWNAILNGYGINGHGEIAVALYHEMRKGRENPDAATYLCVLSACSHS 511

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V +G ++FN M     I   + H  C++D+L RAG    A E + +         W +
Sbjct: 512 GLVDDGLVIFNQMVEERTIRPSQDHCGCIVDLLARAGCFSDAREFVSRYMEKMGPNAWRA 571

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL  C++HGN  +    A  + EL+P +      +SN Y+ +G F+ +  +R +   ++L
Sbjct: 572 LLSGCQLHGNVGLAELAARRVCELDPEEPGQVVLLSNVYASVGRFQDAEALRASMKKKEL 631

Query: 652 TRDIGHSLI 660
            ++ G SL+
Sbjct: 632 IKNPGISLL 640



 Score =  102 bits (253), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/330 (23%), Positives = 158/330 (47%), Gaps = 10/330 (3%)

Query: 6   LLPRVRTITTLAPTCTSIVPLSSSLLLDS----YCQPNPQLNIYSSNRTIDDFVKSGHLN 61
           ++P   T+ TL   C   V L S  L +S      + +  L++  +N  +D +     L+
Sbjct: 189 MVPNAATVLTLIRAC---VALESRRLCESIHGMVVKLSLVLDVAVNNSVLDMYSSMLDLD 245

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           +A ++F+ M  RD++++  +I+      +   AL L+ +M + GI        +++S C+
Sbjct: 246 AATRVFEGMECRDVISWTTMINLLVCLEYASDALMLFRQMRNTGICNDVVVVMNLISACA 305

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
             G    G +IH + +  GFG  L + + ++ +Y + G    +  +FD+   ++L +W  
Sbjct: 306 ILGDLKRGREIHTQAIVCGFGSELPLTNSIIAMYSKCGDLDSSRTVFDQTTGKSLVSWTA 365

Query: 182 MLRAFCELSRPDEVLRMYNKMKA-EGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240
           M+    +   P E L++  KM+  E    + +    ++       LL+  +QLH +  + 
Sbjct: 366 MILGCVQNGYPREALKLLIKMRGEESFYLDSIMLIGVLSASGELALLELCQQLHCYAFES 425

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFDALE 299
           G+    + V N+L+  YS CG +  A   F  +  + D++SWN+I++ Y        A+ 
Sbjct: 426 GFPRYRL-VQNSLISAYSKCGDVEPAYNVFGQMGYIRDIVSWNAILNGYGINGHGEIAVA 484

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNV 329
           L+  M+  R+ P   +++  L+  S +G V
Sbjct: 485 LYHEMRKGRENPDAATYLCVLSACSHSGLV 514


>gi|357129835|ref|XP_003566566.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g05340-like [Brachypodium distachyon]
          Length = 614

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 175/570 (30%), Positives = 280/570 (49%), Gaps = 30/570 (5%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRV-----------LSLGFGLNLYIGSPLVDLYMRMGPS 161
            S +LS C  A  +  G  +H  +           L       L   + LV +Y R G  
Sbjct: 12  LSGLLSRCGRAADHRLGAALHVTIVKNPSHFLLCPLRPSLRHVLVAWNALVSMYARCGRH 71

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM------KAEGVEPNGLSFC 215
             A  +FDE+  R+  +WN ++ +    S  ++ L  + +M         GV  +  +F 
Sbjct: 72  AEAARVFDEMRIRDSVSWNSLIGS----SGAEDALSQFRRMLRSSSSPGGGVSCDHATFT 127

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  C+    L     +H  V+  G+ +  + V NALV  Y  C S   A+++F  +  
Sbjct: 128 TVLSACAREASLPTCAMVHGLVVSRGF-EAEVSVGNALVTAYFECESPGSAERAFHGMAE 186

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF--GK 333
            +VI+W +++S  A  +L  D++ LF +M   R+     S     +  +  G++    G+
Sbjct: 187 RNVITWTAMISGMAREELYKDSIVLFQQM---RRTVDANSATYSSSLLACAGSLALKEGQ 243

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           QIHG V K G +   +HV+S L D+Y KC ++E +++VF             ++     +
Sbjct: 244 QIHGLVVKAGLET-DLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQN 302

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453
           G  + A E+F  M  EGI +D   +S  L A   SA   LG  + +H   IK  F  NI 
Sbjct: 303 GLEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFALG--KQIHALVIKKCFGRNIY 360

Query: 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513
           V   L++ YS+CG +E S QVF + PS N + + SI+  ++R+G G E   + E M   G
Sbjct: 361 VCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADG 420

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
             P  VTFL +L GC+H G  K+G  + NSM S YGI    +HY+C++DMLGRAG+L+ A
Sbjct: 421 ANPTDVTFLSLLHGCSHVGSAKKGLEILNSMSSEYGILPRVEHYACVVDMLGRAGLLEDA 480

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
              ++  P     ++W +L+ +C   GN  IG+  A  L+ L+P   A Y  +SN YS  
Sbjct: 481 RSFIEDGPFKDSALLWQALMGACSFRGNSEIGKYAAEKLLHLDPDSPAAYVLLSNIYSSE 540

Query: 634 GEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           G ++   ++ ++     L +D G S IE+ 
Sbjct: 541 GRWDDRARVMKSMREMGLRKDTGKSWIELE 570



 Score =  140 bits (353), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 126/497 (25%), Positives = 212/497 (42%), Gaps = 23/497 (4%)

Query: 22  SIVPLSSSLLLDSYCQPNPQLN--IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYN 79
           +IV   S  LL   C   P L   + + N  +  + + G    A ++FDEM  RD V++N
Sbjct: 34  TIVKNPSHFLL---CPLRPSLRHVLVAWNALVSMYARCGRHAEAARVFDEMRIRDSVSWN 90

Query: 80  LLISGCGKFRHPKQALYLYDEMVSHGIKESA------STFSSVLSVCSNAGFYTEGIQIH 133
            LI   G     + AL  +  M+              +TF++VLS C+          +H
Sbjct: 91  SLIGSSG----AEDALSQFRRMLRSSSSPGGGVSCDHATFTTVLSACAREASLPTCAMVH 146

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
             V+S GF   + +G+ LV  Y        A   F  + ERN+ TW  M+          
Sbjct: 147 GLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHGMAERNVITWTAMISGMAREELYK 206

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           + + ++ +M+   V+ N  ++   +  C+  + L EG+Q+H  V+K G ++ ++ V + L
Sbjct: 207 DSIVLFQQMR-RTVDANSATYSSSLLACAGSLALKEGQQIHGLVVKAG-LETDLHVESGL 264

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +D YS CG + +    F      D IS   I+  +A   L   A ELF  M         
Sbjct: 265 MDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQNGLEEKAFELFAEMAGEGILIDT 324

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
                 L     +     GKQIH  V K  F   +++V + L +MY KC  +E S+ VF 
Sbjct: 325 NMVSAVLGAFGASAPFALGKQIHALVIKKCFGR-NIYVCNGLINMYSKCGELEESIQVFN 383

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
             P ++    NS++ +    G   +  ++F  M  +G    +VT  + L   S   SA  
Sbjct: 384 ETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADGANPTDVTFLSLLHGCSHVGSAKK 443

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNG 492
           G   +L+  + + G    +     ++D   R G +E +    E  P   + + + ++M  
Sbjct: 444 G-LEILNSMSSEYGILPRVEHYACVVDMLGRAGLLEDARSFIEDGPFKDSALLWQALMGA 502

Query: 493 YSRNG---MGREALDML 506
            S  G   +G+ A + L
Sbjct: 503 CSFRGNSEIGKYAAEKL 519



 Score =  125 bits (315), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 94/371 (25%), Positives = 177/371 (47%), Gaps = 13/371 (3%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T TT+   C     L +  ++         +  +   N  +  + +     SA++ F  M
Sbjct: 125 TFTTVLSACAREASLPTCAMVHGLVVSRGFEAEVSVGNALVTAYFECESPGSAERAFHGM 184

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             R+++T+  +ISG  +    K ++ L+ +M    +  +++T+SS L  C+ +    EG 
Sbjct: 185 AERNVITWTAMISGMAREELYKDSIVLFQQM-RRTVDANSATYSSSLLACAGSLALKEGQ 243

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           QIH  V+  G   +L++ S L+DLY + G     L +F    + +  +  ++L  F +  
Sbjct: 244 QIHGLVVKAGLETDLHVESGLMDLYSKCGLMEDTLSVFRLCRQPDEISLTVILVGFAQNG 303

Query: 191 RPDEVLRMYNKMKAEG--VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248
             ++   ++ +M  EG  ++ N +S      G S    L  GKQ+H+ VIK  +   NI+
Sbjct: 304 LEEKAFELFAEMAGEGILIDTNMVSAVLGAFGASAPFAL--GKQIHALVIKKCF-GRNIY 360

Query: 249 VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCR 308
           V N L++ YS CG L E+ + F+  P  + ISWNSI++ +A +    +  +LF  M+   
Sbjct: 361 VCNGLINMYSKCGELEESIQVFNETPSKNSISWNSIIAAFARHGQGSEVFKLFESMKADG 420

Query: 309 KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG---SVHVQSALTDMYGKCNVI 365
             P+  +F+  L+  S  G+   G +I   +  +  ++G    V   + + DM G+  ++
Sbjct: 421 ANPTDVTFLSLLHGCSHVGSAKKGLEI---LNSMSSEYGILPRVEHYACVVDMLGRAGLL 477

Query: 366 ESSVAVFESAP 376
           E + +  E  P
Sbjct: 478 EDARSFIEDGP 488


>gi|224096620|ref|XP_002310674.1| predicted protein [Populus trichocarpa]
 gi|222853577|gb|EEE91124.1| predicted protein [Populus trichocarpa]
          Length = 908

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 188/661 (28%), Positives = 333/661 (50%), Gaps = 18/661 (2%)

Query: 12  TITTLAPTCTSIV-PLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T++++  TC S+   L    +L    +   + N+  +N  I  F   G +  A  +F  M
Sbjct: 133 TMSSVISTCVSLENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGM 192

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
              D +++N +I+   +    K++L  +  M     + +++T S++L+ C +      G 
Sbjct: 193 DEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGR 252

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            IH  VL  G+  N+   + L+ +Y   G    A  +F  + E+++ +WN M+  + +  
Sbjct: 253 GIHSLVLKFGWNSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDG 312

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              + L++   M       N ++F   +  CS      EGK LH+ VI +G +  N+ V 
Sbjct: 313 NCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVG-LHENVIVG 371

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NALV  Y+  G +IEAKK F  +P  D ++WN+++  +AD +   +AL+ F   +L R+ 
Sbjct: 372 NALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAF---KLMREE 428

Query: 311 PSIRSFVEFLNF--ASRTGN--VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366
               +++   N   A    N  +  G  IH ++   GF     +VQ++L  MY KC  + 
Sbjct: 429 GVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGF-QSDEYVQNSLITMYAKCGDLN 487

Query: 367 SSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           SS  +F+    ++    N++M +  H G++++A++    M   G+ +DE + S  L A +
Sbjct: 488 SSNNIFDRLTSKNASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAA 547

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP---NV 483
             A    G  + LH  A+K G +SN  V+ + MD Y +CG I+    V   IP P   + 
Sbjct: 548 KLAILEEG--QQLHGLAVKLGCDSNPFVASATMDMYGKCGEID---DVLRIIPRPINRSR 602

Query: 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS 543
           + +  + + +SR+G   +A +    MI  G+ PD VTF+ +L+ C+H GMV+EG   ++S
Sbjct: 603 LSWNILTSSFSRHGFFEKAKETFHEMINLGVKPDHVTFVSLLSACSHGGMVEEGLAYYDS 662

Query: 544 MKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEI 603
           M   +GI A   H  C+ID+LGR+G   +AE  +++ P      +W SLL +C+ HGN  
Sbjct: 663 MIKEFGIPAKIGHCVCIIDLLGRSGRFAEAETFIKEMPVSPTDHVWRSLLAACKTHGNLE 722

Query: 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +GR+    L++L+P D + Y   SN  +  G++E   +IR      K+ +    S +++ 
Sbjct: 723 LGRKAVENLLKLDPSDDSAYVLYSNICATTGKWEDVEKIRRQMGLNKIKKKPACSWVKLK 782

Query: 664 S 664
           +
Sbjct: 783 N 783



 Score =  185 bits (469), Expect = 7e-44,   Method: Compositional matrix adjust.
 Identities = 147/538 (27%), Positives = 260/538 (48%), Gaps = 5/538 (0%)

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A K+F EM  +++V++  L+     +  P   + +Y  M S G+  + +T SSV+S C +
Sbjct: 84  AMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSCNDNTMSSVISTCVS 143

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G Q+   V+  G   N+ + + L+ ++   G    A  +F  + E +  +WN M
Sbjct: 144 LENELLGYQVLGHVIKYGLETNVSVANSLISMFGYFGSVEEACYVFSGMDEHDTISWNSM 203

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           + A+       E LR ++ M     E N  +   M+ GC     L  G+ +HS V+K GW
Sbjct: 204 IAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDNLKWGRGIHSLVLKFGW 263

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            + N+  +N L+  YS  G   +A+  F  +   D+ISWNS+++ YA      DAL+L  
Sbjct: 264 -NSNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMACYAQDGNCLDALKLLA 322

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M   R+  +  +F   L   S       GK +H  V  +G  H +V V +AL  +Y K 
Sbjct: 323 TMFYMRRGANYVTFTSALAACSDPEFATEGKILHALVIHVGL-HENVIVGNALVTLYAKS 381

Query: 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
            ++  +  VF++ P R     N+L+     S    +A++ F  M +EG+ ++ +T+S  L
Sbjct: 382 GLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKLMREEGVPINYITISNVL 441

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN 482
            A  ++ +  L     +H   I +GF+S+  V  SL+  Y++CG +  S+ +F+++ S N
Sbjct: 442 GA-CLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCGDLNSSNNIFDRLTSKN 500

Query: 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542
              + ++M   + +G   EAL  L  M + G+  D+ +F   LA      +++EGQ + +
Sbjct: 501 ASAWNAMMAANAHHGHMEEALKFLLEMRRAGVNVDEFSFSECLAAAAKLAILEEGQQL-H 559

Query: 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            +    G D++    S  +DM G+ G +D    ++ + P     + W+ L  S   HG
Sbjct: 560 GLAVKLGCDSNPFVASATMDMYGKCGEIDDVLRIIPR-PINRSRLSWNILTSSFSRHG 616



 Score =  184 bits (466), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 124/491 (25%), Positives = 241/491 (49%), Gaps = 9/491 (1%)

Query: 92  KQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF-YTEGIQIHCRVLSLGFGLNLYIGSP 150
           ++++  ++EM   G+K S    +S+++ C  + +   EG+Q+H  ++ +G   ++++G+ 
Sbjct: 11  RESMRFFNEMRDFGVKPSGIAVASLVTACERSEWMLIEGVQVHGFIVKVGLLSDVFVGTS 70

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LV LY   G +  A+ +F E+  +N+ +W  ++ A+ +   P  V+ +Y +M++EG+  N
Sbjct: 71  LVHLYGNYGLAADAMKVFQEMIYKNVVSWTALMVAYVDYGEPSMVMNIYRRMRSEGMSCN 130

Query: 211 GLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
             +   ++  C    L +E  G Q+  HVIK G ++ N+ VAN+L+  +   GS+ EA  
Sbjct: 131 DNTMSSVISTCV--SLENELLGYQVLGHVIKYG-LETNVSVANSLISMFGYFGSVEEACY 187

Query: 269 SFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN 328
            F  +   D ISWNS+++ Y    L  ++L  F  M    K  +  +    L       N
Sbjct: 188 VFSGMDEHDTISWNSMIAAYIRNGLCKESLRCFSWMFRVHKEINSTTLSTMLAGCGSVDN 247

Query: 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMT 388
           + +G+ IH  V K G++  +V   + L  MY      E +  VF+    + +   NS+M 
Sbjct: 248 LKWGRGIHSLVLKFGWN-SNVCASNTLITMYSDAGRCEDAELVFQGMVEKDMISWNSMMA 306

Query: 389 SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448
                GN  DA+++   M     G + VT ++ L A S    A  G  ++LH   I  G 
Sbjct: 307 CYAQDGNCLDALKLLATMFYMRRGANYVTFTSALAACSDPEFATEG--KILHALVIHVGL 364

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
             N+ V  +L+  Y++ G +  + +VF+ +P  + V + +++ G++ +    EAL   ++
Sbjct: 365 HENVIVGNALVTLYAKSGLMIEAKKVFQTMPKRDGVTWNALIGGHADSEEPDEALKAFKL 424

Query: 509 MIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           M + G+  + +T   VL  C     + E  +  ++   + G  +D    + +I M  + G
Sbjct: 425 MREEGVPINYITISNVLGACLAPNDLLEHGMPIHAFIILTGFQSDEYVQNSLITMYAKCG 484

Query: 569 ILDKAEELLQQ 579
            L+ +  +  +
Sbjct: 485 DLNSSNNIFDR 495


>gi|449505835|ref|XP_004162581.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
           protein At4g02750-like [Cucumis sativus]
          Length = 741

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 181/651 (27%), Positives = 320/651 (49%), Gaps = 85/651 (13%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMP-ARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           +IYS    I  + + G L  A++LF+ +P  +D V  N LI+G  K R  ++A  L+DEM
Sbjct: 107 DIYSWTLMITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEM 166

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQI-----HCRVLSLGFGLNLYIG-------- 148
           +   +     +++S+LS  +  G    G+Q         V+S    ++ Y+G        
Sbjct: 167 LVKNV----VSWNSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAW 222

Query: 149 -------SPLVDLYMRM-------GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194
                  +P V  ++ M       G    A +LF+E+P +NL +WN M+ A+   ++ D+
Sbjct: 223 MFFKKIPTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDD 282

Query: 195 VLRMYNKMKAEGVEPNGLSFCYMVRG-CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
             +++ +M     E + +S+  M+ G   +G LL   + L+    K      NI    A+
Sbjct: 283 AYKLFMEMP----EKDSVSWTAMINGYVRVGKLLQAREILNLMPYK------NIAAQTAM 332

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           ++ Y   G + EA + F  I V D + WNS+++ YA      +AL LF  M +C+   S 
Sbjct: 333 INGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEM-VCKDMVSW 391

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            + +                                         Y +   ++ ++ +F 
Sbjct: 392 NTMIA---------------------------------------AYAQAGQMDKALEMFN 412

Query: 374 SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433
               R++   NSL+T  + +G   +A+  F  M  +G   D+ T+   L+A +  A+ N+
Sbjct: 413 EMQERNVVSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNV 472

Query: 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY 493
           G    LH   IK+GF +++ V  +++  Y++ G +  +  VF +I   +VV + S++ GY
Sbjct: 473 GV--QLHHLTIKTGFGNDLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGY 530

Query: 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553
           + NG G+EA+++ EVM  RG+IPD+VTF  +L+ CNH G V +G  +F SM   Y I   
Sbjct: 531 ALNGCGKEAVELFEVMPLRGIIPDEVTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQ 590

Query: 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613
            +HY+C+I++LGR G L++A E++Q         +W +LL +CR+H N  + +  A  L+
Sbjct: 591 SEHYACVINLLGRVGRLEEAVEIVQGMKTVSSAKIWGALLWACRIHHNLELAKYSAERLL 650

Query: 614 ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
            LEP + + Y  +SN ++E G +++  ++R      K  +  G S IE+++
Sbjct: 651 ALEPQNASNYVLLSNMHAEAGRWDMVERVRVLMKENKAEKQPGCSWIEIDN 701



 Score =  116 bits (290), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 169/386 (43%), Gaps = 51/386 (13%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N+ S    +  F   G +  A+ LF+EMP +++V++N +I    +      A  L+ 
Sbjct: 229 PTPNVVSWVTMLSGFAHYGRMTEARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFM 288

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR-VLSLGFGLNLYIGSPLVDLYMRM 158
           EM     K+S S  + +       G+   G  +  R +L+L    N+   + +++ Y++ 
Sbjct: 289 EMPE---KDSVSWTAMI------NGYVRVGKLLQAREILNLMPYKNIAAQTAMINGYLQS 339

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
           G    A ++F ++  R+   WN M+  +    R DE LR++ +M  + +           
Sbjct: 340 GRMDEANEIFSQISVRDSVCWNSMITGYAHCGRTDEALRLFQEMVCKDM----------- 388

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
                                + W        N ++  Y+  G + +A + F+ +   +V
Sbjct: 389 ---------------------VSW--------NTMIAAYAQAGQMDKALEMFNEMQERNV 419

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SWNS+++ Y    L F+AL  F  M+   ++P   + V  L  ++    +  G Q+H  
Sbjct: 420 VSWNSLITGYVQNGLYFEALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHL 479

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
             K GF +  + V++A+  MY K   +  +  VF     + +   NSL+     +G  K+
Sbjct: 480 TIKTGFGN-DLFVKNAILTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKE 538

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKA 424
           AVE+F  M   GI  DEVT +  L A
Sbjct: 539 AVELFEVMPLRGIIPDEVTFTGLLSA 564



 Score =  109 bits (272), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 166/360 (46%), Gaps = 30/360 (8%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALY 96
           P  N+ S N  I  +V+   ++ A KLF EMP +D V++  +I+G    GK    ++ L 
Sbjct: 260 PTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKLLQAREILN 319

Query: 97  L--YDEMVSHG-----------IKESASTFSSVL---SVCSNAGFYTEGIQIHC------ 134
           L  Y  + +             + E+   FS +    SVC N+         HC      
Sbjct: 320 LMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYA---HCGRTDEA 376

Query: 135 -RVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPD 193
            R+       ++   + ++  Y + G   +AL++F+E+ ERN+ +WN ++  + +     
Sbjct: 377 LRLFQEMVCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQERNVVSWNSLITGYVQNGLYF 436

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
           E L  +  MK +G +P+  +    +R  +    L+ G QLH   IK G+ + ++FV NA+
Sbjct: 437 EALNCFILMKQQGEKPDQTTIVCCLRASANLAALNVGVQLHHLTIKTGFGN-DLFVKNAI 495

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           +  Y+  G + EA+  F  I   DV+SWNS+++ YA      +A+ELF  M L    P  
Sbjct: 496 LTMYAKSGRVPEAENVFAEIKXKDVVSWNSLIAGYALNGCGKEAVELFEVMPLRGIIPDE 555

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373
            +F   L+  +  G V  G  +   +T+           + + ++ G+   +E +V + +
Sbjct: 556 VTFTGLLSACNHGGFVDQGLNLFKSMTETYSIKPQSEHYACVINLLGRVGRLEEAVEIVQ 615



 Score = 85.1 bits (209), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 87/421 (20%), Positives = 179/421 (42%), Gaps = 66/421 (15%)

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
           I  L   G+   +  + L   + NI   N+++  Y+  G +  A++ FD +P  +++SWN
Sbjct: 22  ISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIANARELFDLMPQRNLVSWN 81

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S+++ Y   +L+ DA  LF RM     +  I S+   +   +R G +   +++   +   
Sbjct: 82  SMIAGYLHNELVEDAARLFDRM----FKRDIYSWTLMITCYTRIGELEKARELFNLLP-- 135

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
             D      ++AL   Y K  +   +  +F+    +++   NS+++    +G ++  ++ 
Sbjct: 136 --DKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSWNSILSGYTKNGKMQLGLQF 193

Query: 403 F-----------GFMVDEGIGLDEV-----------TLSTTLKALSVSASANLGSCRLLH 440
           F             MVD  +G+ ++           T +       +S  A+ G  R+  
Sbjct: 194 FEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVVSWVTMLSGFAHYG--RMTE 251

Query: 441 CCAIKSGFESNIAVSCSLM-DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
              + +   +   VS + M  AY R   I+ ++++F ++P  + V +T+++NGY R G  
Sbjct: 252 ARNLFNEMPTKNLVSWNAMIGAYVRENQIDDAYKLFMEMPEKDSVSWTAMINGYVRVGKL 311

Query: 500 REALDMLEVMIQRGL---------------------------IPDKVTFLCVLAGCNHSG 532
            +A ++L +M  + +                           + D V +  ++ G  H G
Sbjct: 312 LQAREILNLMPYKNIAAQTAMINGYLQSGRMDEANEIFSQISVRDSVCWNSMITGYAHCG 371

Query: 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL 592
              E   +F  M     +  D   ++ MI    +AG +DKA E+  +     + + W+SL
Sbjct: 372 RTDEALRLFQEM-----VCKDMVSWNTMIAAYAQAGQMDKALEMFNEMQ-ERNVVSWNSL 425

Query: 593 L 593
           +
Sbjct: 426 I 426



 Score = 67.4 bits (163), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 67/333 (20%), Positives = 128/333 (38%), Gaps = 75/333 (22%)

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           V  +G     V  Q+      G+   IE +VAVF     R++   NS++++   +G I +
Sbjct: 5   VKSIGEKGSYVFTQNLRISQLGRSGRIEEAVAVFLKMTERNIVTYNSMISAYAKNGRIAN 64

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A E+F  M    +      ++  L    V  +A L              F+ +I     +
Sbjct: 65  ARELFDLMPQRNLVSWNSMIAGYLHNELVEDAARL----------FDRMFKRDIYSWTLM 114

Query: 459 MDAYSRCGHIELSHQVFEKIPS--------------------------------PNVVCF 486
           +  Y+R G +E + ++F  +P                                  NVV +
Sbjct: 115 ITCYTRIGELEKARELFNLLPDKQDTVCRNALIAGYAKKRLFREAKKLFDEMLVKNVVSW 174

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLI---------------------------PDKV 519
            SI++GY++NG  +  L   E M +R ++                           P+ V
Sbjct: 175 NSILSGYTKNGKMQLGLQFFEAMGERNVVSWNLMVDGYVGVGDLDSAWMFFKKIPTPNVV 234

Query: 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           +++ +L+G  H G + E + +FN M +      +   ++ MI    R   +D A +L  +
Sbjct: 235 SWVTMLSGFAHYGRMTEARNLFNEMPT-----KNLVSWNAMIGAYVRENQIDDAYKLFME 289

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL 612
            P   D + W++++      G  +  R + N++
Sbjct: 290 MP-EKDSVSWTAMINGYVRVGKLLQAREILNLM 321


>gi|449484072|ref|XP_004156776.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 754

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 178/663 (26%), Positives = 321/663 (48%), Gaps = 14/663 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDD-----FV 55
           M ++  LP   T+  +  TC  ++  +  + +        +L ++  N  I       + 
Sbjct: 99  MRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGL---TSKLGLFVGNSAIGSSFIYMYS 155

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K GH+ SA  +F E+  +D+VT+  LI G  +     + L    EM   G   +  T  S
Sbjct: 156 KCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGS 215

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
               C +     EG  +H   L  GF     + S ++ +Y R G    A   F +L +++
Sbjct: 216 GFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKD 275

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           L +W  ++    +     E L ++ +M+A  + P+ +    M+ G      + EGK  H+
Sbjct: 276 LISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHA 335

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            ++K       I   NAL+  Y   G L  A K F          W++++  Y++     
Sbjct: 336 RILKQCCALSGI-THNALLSMYCKFGHLGTANKIFHSFHKSSE-DWSTMILGYSNMGQKE 393

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
             +     M L  + P + S V  ++  S+ G +  G+ IH Y  K      +V V ++L
Sbjct: 394 KCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIE-NVSVANSL 452

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMYGK   + ++  +F     R +   N+L++S   SG + +A+ +F  MV E +  ++
Sbjct: 453 MDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNK 512

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VT    L A +  AS + G    +H    ++GFESNI +  +L+D Y++CG +E S ++F
Sbjct: 513 VTCIIVLSACAHLASLDEG--EKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLF 570

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
                 +V+ +  +++ Y  +G    A+++ ++M +  + P+  TFL +L+ CNH+G V 
Sbjct: 571 NSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVL 630

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG+ +F+ M+  YGI+   +HY+ +ID+LGR+G L+ AE L+   P   D  +W SLL +
Sbjct: 631 EGRHLFDRMQK-YGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWGSLLSA 689

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           C++H    +G R+A   +E +P +   Y  +S+ YS +G ++   ++R+    R + +  
Sbjct: 690 CKIHNEFEVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKRGVEKRA 749

Query: 656 GHS 658
           G S
Sbjct: 750 GWS 752



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/542 (24%), Positives = 260/542 (47%), Gaps = 18/542 (3%)

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           LF  + ++D+  +N +I         ++A   Y +M +     +  T   V+S C+    
Sbjct: 64  LFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMM 123

Query: 126 YTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
           +  G+ IH     LG F  N  IGS  + +Y + G    A  +F E+  +++ TW  ++ 
Sbjct: 124 FNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIV 183

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            + + +     L+   +M   G  PN  +     + C     L EGK LH   +K G++ 
Sbjct: 184 GYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLC 243

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
             + V + ++  YS CGS  EA + F  +   D+ISW SI+++++ + L+ + L LF+ M
Sbjct: 244 FEV-VKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEM 302

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-----GFDHGSVHVQSALTDMY 359
           Q     P        L     +  ++ GK  H  + K      G  H      +AL  MY
Sbjct: 303 QASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITH------NALLSMY 356

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K   + ++  +F S   +S E  ++++    + G  +  +     M+  G   D  +L 
Sbjct: 357 CKFGHLGTANKIFHSFH-KSSEDWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLV 415

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + + + S   + N+G  R +HC AIK+    N++V+ SLMD Y + GH+  + ++F +  
Sbjct: 416 SVISSCSQVGAINIG--RSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTL 473

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +V+ + ++++ Y ++G+  EA+ + + M++  + P+KVT + VL+ C H   + EG+ 
Sbjct: 474 QRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEK 533

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +   +K   G +++    + +IDM  + G L+ + +L   T    D ++W+ ++ +  +H
Sbjct: 534 IHQYIKE-NGFESNITIRTALIDMYAKCGELETSRKLFNSTE-ERDVILWNVMISNYGMH 591

Query: 600 GN 601
           G+
Sbjct: 592 GH 593



 Score =  113 bits (282), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 104/472 (22%), Positives = 197/472 (41%), Gaps = 14/472 (2%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H  +++ G   N++  + L+  Y        +  LF  +  +++  WN ++++       
Sbjct: 30  HSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSNGDY 89

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
                 Y +M+A    PN  +   +V  C+  M+ + G  +H    KLG    N  + ++
Sbjct: 90  QRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAIGSS 149

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
            +  YS CG +  A   F  I V DV++W +++  Y   +     L+  F M      P+
Sbjct: 150 FIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPN 209

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
            ++             +  GK +HG   K GF    V V+S +  MY +C   E +   F
Sbjct: 210 YKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEV-VKSTILSMYSRCGSPEEAYRCF 268

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
                + L    S++      G + + + +F  M    I  DE+ +S  L     S    
Sbjct: 269 CKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIF 328

Query: 433 LGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            G     R+L  C   SG   N     +L+  Y + GH+  ++++F      +    T I
Sbjct: 329 EGKAFHARILKQCCALSGITHN-----ALLSMYCKFGHLGTANKIFHSFHKSSEDWSTMI 383

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVY 548
           + GYS  G   + +  L  M+  G  PD  + + V++ C+  G +  G+ +   ++K+  
Sbjct: 384 L-GYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKN-- 440

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
            I  +    + ++DM G++G +     +  +T    D + W++L+ S +  G
Sbjct: 441 SIIENVSVANSLMDMYGKSGHVTATWRIFHRTL-QRDVISWNTLISSYKQSG 491


>gi|334182623|ref|NP_001185013.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
 gi|332191339|gb|AEE29460.1| PPR repeat domain-containing protein [Arabidopsis thaliana]
          Length = 928

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 166/593 (27%), Positives = 306/593 (51%), Gaps = 15/593 (2%)

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
           G+++ A  +FD+M  RD +++N + +   +  H +++  ++  M     + +++T S++L
Sbjct: 192 GNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLL 251

Query: 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           SV  +      G  IH  V+ +GF   + + + L+ +Y   G SV A  +F ++P ++L 
Sbjct: 252 SVLGHVDHQKWGRGIHGLVVKMGFDSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLI 311

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN ++ +F    R  + L +   M + G   N ++F   +  C      ++G+ LH  V
Sbjct: 312 SWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAACFTPDFFEKGRILHGLV 371

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
           +  G +  N  + NALV  Y   G + E+++    +P  DV++WN+++  YA+ +    A
Sbjct: 372 VVSG-LFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDPDKA 430

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVY-FGKQIHGYVTKLGFDHGSVHVQSALT 356
           L  F  M++     +  + V  L+     G++   GK +H Y+   GF+    HV+++L 
Sbjct: 431 LAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYIVSAGFESDE-HVKNSLI 489

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV 416
            MY KC  + SS  +F     R++   N+++ +  H G+ ++ +++   M   G+ LD+ 
Sbjct: 490 TMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSLDQF 549

Query: 417 TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE-----LS 471
           + S  L A   +  A L   + LH  A+K GFE +  +  +  D YS+CG I      L 
Sbjct: 550 SFSEGLSA--AAKLAVLEEGQQLHGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKMLP 607

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
             V   +PS N+     +++   R+G   E       M++ G+ P  VTF+ +L  C+H 
Sbjct: 608 PSVNRSLPSWNI-----LISALGRHGYFEEVCATFHEMLEMGIKPGHVTFVSLLTACSHG 662

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V +G   ++ +   +G++   +H  C+ID+LGR+G L +AE  + + P   + ++W S
Sbjct: 663 GLVDKGLAYYDMIARDFGLEPAIEHCICVIDLLGRSGRLAEAETFISKMPMKPNDLVWRS 722

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644
           LL SC++HGN   GR+ A  L +LEP D +VY   SN ++  G +E    +R+
Sbjct: 723 LLASCKIHGNLDRGRKAAENLSKLEPEDDSVYVLSSNMFATTGRWEDVENVRK 775



 Score =  204 bits (520), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 143/536 (26%), Positives = 268/536 (50%), Gaps = 12/536 (2%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG-FYTE 128
           MP R+ V++N ++SG  +     + +  + +M   GIK S+   +S+++ C  +G  + E
Sbjct: 1   MPVRNEVSWNTMMSGIVRVGLYLEGMEFFRKMCDLGIKPSSFVIASLVTACGRSGSMFRE 60

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G+Q+H  V   G   ++Y+ + ++ LY   G    +  +F+E+P+RN+ +W  ++  + +
Sbjct: 61  GVQVHGFVAKSGLLSDVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSD 120

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE--GKQLHSHVIKLGWVDVN 246
              P+EV+ +Y  M+ EGV  N  S   ++  C  G+L DE  G+Q+   V+K G ++  
Sbjct: 121 KGEPEEVIDIYKGMRGEGVGCNENSMSLVISSC--GLLKDESLGRQIIGQVVKSG-LESK 177

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
           + V N+L+    + G++  A   FD +   D ISWNSI + YA    I ++  +F  M+ 
Sbjct: 178 LAVENSLISMLGSMGNVDYANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRR 237

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY-GKCNVI 365
                +  +    L+      +  +G+ IHG V K+GFD   V V + L  MY G    +
Sbjct: 238 FHDEVNSTTVSTLLSVLGHVDHQKWGRGIHGLVVKMGFD-SVVCVCNTLLRMYAGAGRSV 296

Query: 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
           E+++ VF+  P + L   NSLM S ++ G   DA+ +   M+  G  ++ VT ++ L A 
Sbjct: 297 EANL-VFKQMPTKDLISWNSLMASFVNDGRSLDALGLLCSMISSGKSVNYVTFTSALAAC 355

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
                   G  R+LH   + SG   N  +  +L+  Y + G +  S +V  ++P  +VV 
Sbjct: 356 FTPDFFEKG--RILHGLVVVSGLFYNQIIGNALVSMYGKIGEMSESRRVLLQMPRRDVVA 413

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           + +++ GY+ +    +AL   + M   G+  + +T + VL+ C   G + E     ++  
Sbjct: 414 WNALIGGYAEDEDPDKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDLLERGKPLHAYI 473

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
              G ++D    + +I M  + G L  +++L        + + W+++L +   HG+
Sbjct: 474 VSAGFESDEHVKNSLITMYAKCGDLSSSQDLFNGLD-NRNIITWNAMLAANAHHGH 528



 Score =  170 bits (430), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 133/541 (24%), Positives = 257/541 (47%), Gaps = 16/541 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y S   +  +   G ++ ++K+F+EMP R++V++  L+ G      P++ + +Y  M 
Sbjct: 76  DVYVSTAILHLYGVYGLVSCSRKVFEEMPDRNVVSWTSLMVGYSDKGEPEEVIDIYKGMR 135

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  + ++ S V+S C      + G QI  +V+  G    L + + L+ +   MG   
Sbjct: 136 GEGVGCNENSMSLVISSCGLLKDESLGRQIIGQVVKSGLESKLAVENSLISMLGSMGNVD 195

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD++ ER+  +WN +  A+ +    +E  R+++ M+    E N  +   ++    
Sbjct: 196 YANYIFDQMSERDTISWNSIAAAYAQNGHIEESFRIFSLMRRFHDEVNSTTVSTLLSVLG 255

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
                  G+ +H  V+K+G+ D  + V N L+  Y+  G  +EA   F  +P  D+ISWN
Sbjct: 256 HVDHQKWGRGIHGLVVKMGF-DSVVCVCNTLLRMYAGAGRSVEANLVFKQMPTKDLISWN 314

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF------GKQIH 336
           S+++ + +     DAL L     LC    S +S V ++ F S     +       G+ +H
Sbjct: 315 SLMASFVNDGRSLDALGL-----LCSMISSGKS-VNYVTFTSALAACFTPDFFEKGRILH 368

Query: 337 GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396
           G V   G  +  + + +AL  MYGK   +  S  V    P R +   N+L+       + 
Sbjct: 369 GLVVVSGLFYNQI-IGNALVSMYGKIGEMSESRRVLLQMPRRDVVAWNALIGGYAEDEDP 427

Query: 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456
             A+  F  M  EG+  + +T+ + L A  +     L   + LH   + +GFES+  V  
Sbjct: 428 DKALAAFQTMRVEGVSSNYITVVSVLSACLLPGDL-LERGKPLHAYIVSAGFESDEHVKN 486

Query: 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516
           SL+  Y++CG +  S  +F  + + N++ + +++   + +G G E L ++  M   G+  
Sbjct: 487 SLITMYAKCGDLSSSQDLFNGLDNRNIITWNAMLAANAHHGHGEEVLKLVSKMRSFGVSL 546

Query: 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEEL 576
           D+ +F   L+      +++EGQ + + +    G + D   ++   DM  + G + +  ++
Sbjct: 547 DQFSFSEGLSAAAKLAVLEEGQQL-HGLAVKLGFEHDSFIFNAAADMYSKCGEIGEVVKM 605

Query: 577 L 577
           L
Sbjct: 606 L 606


>gi|297828580|ref|XP_002882172.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
 gi|297328012|gb|EFH58431.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
          Length = 638

 Score =  259 bits (663), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 168/597 (28%), Positives = 300/597 (50%), Gaps = 8/597 (1%)

Query: 70  MPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEG 129
           M  R +  +N L+    + +H +Q +  + +M     K    T    L  C        G
Sbjct: 1   MTKRTLYQWNTLLKSLSRDKHWEQVMCHFSQMFRDEEKPDNFTLPVALKACGELREVKYG 60

Query: 130 IQIHCRVL-SLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
             IH  +  ++  G +LY+GS L+ +Y++ G    AL +F+EL + ++ TW+ M+  F +
Sbjct: 61  EMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALRMFNELEKPDIVTWSSMVSGFEK 120

Query: 189 LSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNI 247
              P + +  + +M  A  V P+ ++   +V  C+       G+ +H  V++ G+ + ++
Sbjct: 121 NGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLSNSRLGRCVHGFVMRRGFSN-DL 179

Query: 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC 307
            + N+L++ Y+   +  EA   F  +   DVISW+++++ Y       +AL +F  M   
Sbjct: 180 SLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIACYVQNGAAAEALRVFNEMIDD 239

Query: 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIES 367
              P++ + +  L   +   ++  G++ H    + G +   V V +AL DMY KC   E 
Sbjct: 240 GTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKGLE-TEVKVSTALVDMYMKCFSPEE 298

Query: 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL-S 426
           + AVF   P + +    +L++    +G    ++E F  M+ E     +  L   LK L S
Sbjct: 299 AYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIMLLENNTRPDAIL--MLKVLGS 356

Query: 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
            S    L      H   IK GF+SN  +  SL++ YSRCG +  + +VF +I   + V +
Sbjct: 357 CSELGFLKQAECFHSYVIKYGFDSNPFIGASLVELYSRCGSLGNASKVFNEIALKDTVVW 416

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLI-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545
           TS++ GY  +G G +AL+    M++   + P++VTFL +L+ C+H+G++ EG  +F  M 
Sbjct: 417 TSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSILSACSHAGLIHEGLRIFELMV 476

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
           + Y +  + +HY+ ++D+LGR G LD A E+ ++ P      +  +LL +CR+H N  + 
Sbjct: 477 NDYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSPTPQILGTLLGACRIHQNGEMA 536

Query: 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662
             VA  L ELE      Y  +SN Y   GE+E   ++R +   R + + +  SLIE+
Sbjct: 537 ETVAKQLFELESNHAGYYMLMSNMYGVKGEWENVEKLRNSVKQRGIKKGLAESLIEI 593



 Score =  153 bits (386), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 118/480 (24%), Positives = 225/480 (46%), Gaps = 9/480 (1%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSGHLNSAKK 65
           P   T+      C  +  +    ++  + + N  L  ++Y  +  I  +VK G +  A +
Sbjct: 39  PDNFTLPVALKACGELREVKYGEMIHGFLKKNVTLGSDLYVGSSLIYMYVKCGRMTEALR 98

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAG 124
           +F+E+   D+VT++ ++SG  K   P QA+  +  M +   +     T  +++S C+   
Sbjct: 99  MFNELEKPDIVTWSSMVSGFEKNGSPYQAVEFFRRMATASDVTPDRVTLITLVSACTKLS 158

Query: 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
               G  +H  V+  GF  +L + + L++ Y +      A++LF  + E+++ +W+ ++ 
Sbjct: 159 NSRLGRCVHGFVMRRGFSNDLSLVNSLLNCYAKSRAFKEAVNLFKMMAEKDVISWSTVIA 218

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            + +     E LR++N+M  +G EPN  +   +++ C+    L++G++ H   I+ G ++
Sbjct: 219 CYVQNGAAAEALRVFNEMIDDGTEPNVATVLCVLQACAAANDLEQGRKTHELAIRKG-LE 277

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
             + V+ ALVD Y  C S  EA   F  IP  DV+SW +++S +    +   ++E F  M
Sbjct: 278 TEVKVSTALVDMYMKCFSPEEAYAVFSRIPKKDVVSWVALISGFTLNGMAHRSIEEFSIM 337

Query: 305 QL-CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363
            L    RP     ++ L   S  G +   +  H YV K GFD     + ++L ++Y +C 
Sbjct: 338 LLENNTRPDAILMLKVLGSCSELGFLKQAECFHSYVIKYGFDSNPF-IGASLVELYSRCG 396

Query: 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTL 422
            + ++  VF     +      SL+T     G    A+E F  MV    +  +EVT  + L
Sbjct: 397 SLGNASKVFNEIALKDTVVWTSLITGYGIHGKGTKALETFNHMVRSSEVKPNEVTFLSIL 456

Query: 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SP 481
            A S +   + G  R+            N+     L+D   R G ++ + ++ +++P SP
Sbjct: 457 SACSHAGLIHEG-LRIFELMVNDYRLAPNLEHYAVLVDLLGRVGELDTAIEITKRMPFSP 515


>gi|413916018|gb|AFW55950.1| hypothetical protein ZEAMMB73_919937 [Zea mays]
          Length = 864

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 171/656 (26%), Positives = 319/656 (48%), Gaps = 9/656 (1%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T+  L  +C  +  L+  + + +   +   + ++ + +  +D + K   L+ A + F  M
Sbjct: 153 TLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCRSLDDALRFFHGM 212

Query: 71  PARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGI 130
             R+ V++   I+GC +     + + L+ +M   G+  S   ++S    C+     +   
Sbjct: 213 GERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFRSCAAMPCLSTAR 272

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
           Q+H   +   F  +  +G+ +VD+Y + G  V A   F  LP  N+ T N M+       
Sbjct: 273 QLHAHAIKNVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLPHHNVETCNAMMVGLVRTG 332

Query: 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
              E ++++  M   GV  + +S   +   C+      +G Q+H   +K G+ DV++ V 
Sbjct: 333 LGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQVHCLAVKSGF-DVDVCVR 391

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
           NA++D Y  C +L+EA   F  +   D +SWN+I++     +   D +     M      
Sbjct: 392 NAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNECYEDTIAHLNEMLRSGME 451

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTK--LGFDHGSVHVQSALTDMYGKCNVIESS 368
           P   ++   L   +   ++ +G  +HG   K  LG D     V S + DMY KC  I  +
Sbjct: 452 PDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGLD---AFVSSTVVDMYCKCGAITEA 508

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             + +   G+ L   NS+++    +   ++A   F  M+D G+  D  T +T L   +  
Sbjct: 509 QKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGVKPDHFTYATVLDTCANL 568

Query: 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488
           A+  LG  + +H   IK     +  +S +L+D Y++CG++  S  +FEK    + V + +
Sbjct: 569 ATIELG--KQIHGQIIKQEMLGDEYISSTLVDMYAKCGNMPDSLLMFEKARKLDFVSWNA 626

Query: 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548
           ++ GY+ +G G EAL+M E M +  ++P+  TF+ VL  C+H G++ +G   F+ M S Y
Sbjct: 627 MICGYALHGQGLEALEMFERMQRANVVPNHATFVAVLRACSHVGLLDDGCQYFHLMTSRY 686

Query: 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRV 608
            +    +H++CM+D+LGR+    +A E ++  P   D ++W +LL  C++  +  +    
Sbjct: 687 KLVPQLEHFACMVDILGRSKGPQEALEFIRSMPIEADAVVWKTLLSICKIRQDVEVAETA 746

Query: 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
           A+ ++ L+P D +VY  +SN Y+  G++    + R      +L ++ G S IEV S
Sbjct: 747 ASNVLRLDPDDASVYILLSNVYAGSGKWVDVSRTRRLMRQGRLRKEPGCSWIEVQS 802



 Score =  195 bits (496), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 146/576 (25%), Positives = 268/576 (46%), Gaps = 34/576 (5%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  +  S N  +  +V +G  ++A  LF  MP  D+V++N LISG  +    + ++ L  
Sbjct: 81  PHRDTVSWNTMLTAYVHAGDTDTAASLFGTMPDPDVVSWNTLISGYCQHGMFRNSVGLSM 140

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EM   G+    +T + +L  C        G+QIH   +  G   ++  GS LVD+Y +  
Sbjct: 141 EMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTGLETDVRAGSALVDMYGKCR 200

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               AL  F  + ERN  +W   +    +  +    + ++ +M+  G+  +  ++    R
Sbjct: 201 SLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGVSQPAYASAFR 260

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIF-----VANALVDFYSACGSLIEAKKSFDFIP 274
            C+    L   +QLH+H IK      N+F     V  A+VD Y+  G+L++A+++F  +P
Sbjct: 261 SCAAMPCLSTARQLHAHAIK------NVFSSDRVVGTAIVDVYAKAGNLVDARRAFIGLP 314

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             +V + N+++       L  +A++LF  M        + S     +  +     + G Q
Sbjct: 315 HHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGYFQGLQ 374

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H    K GFD   V V++A+ D+YGKC  +  +  VF+    R     N+++ +L  + 
Sbjct: 375 VHCLAVKSGFDV-DVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIAALEQNE 433

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
             +D +     M+  G+  D+ T  + LKA +   S   G   ++H  AIKSG   +  V
Sbjct: 434 CYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYG--LVVHGKAIKSGLGLDAFV 491

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
           S +++D Y +CG I  + ++ ++I    +V + SI++G+S      EA      M+  G+
Sbjct: 492 SSTVVDMYCKCGAITEAQKLHDRIGGQELVSWNSIISGFSLTKQSEEAQRFFSEMLDMGV 551

Query: 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSM--KSVYGIDADRQHYSCMIDMLGRAG---- 568
            PD  T+  VL  C +   ++ G+ +   +  + + G   D    S ++DM  + G    
Sbjct: 552 KPDHFTYATVLDTCANLATIELGKQIHGQIIKQEMLG---DEYISSTLVDMYAKCGNMPD 608

Query: 569 ---ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
              + +KA +L        D + W++++    +HG 
Sbjct: 609 SLLMFEKARKL--------DFVSWNAMICGYALHGQ 636



 Score =  181 bits (460), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 140/586 (23%), Positives = 274/586 (46%), Gaps = 52/586 (8%)

Query: 109 SASTFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
           + +TFS +  +C++AG    T G   H R+L  GF    ++ + L+ +Y R G +  A  
Sbjct: 16  ATATFSHLYQLCASAGRSALTTGQAAHARMLVSGFMPTTFVSNCLLQMYARCGGTAHAHG 75

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG-CSIGM 225
           +FD +P R+  +WN ML A+      D    ++  M     +P+ +S+  ++ G C  GM
Sbjct: 76  VFDTMPHRDTVSWNTMLTAYVHAGDTDTAASLFGTMP----DPDVVSWNTLISGYCQHGM 131

Query: 226 L-------------------------------LDE---GKQLHSHVIKLGWVDVNIFVAN 251
                                           LD+   G Q+H+  +K G ++ ++   +
Sbjct: 132 FRNSVGLSMEMSRRGVALDRTTLAVLLKSCGGLDDLALGVQIHALAVKTG-LETDVRAGS 190

Query: 252 ALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311
           ALVD Y  C SL +A + F  +   + +SW + ++     +     +ELF +MQ      
Sbjct: 191 ALVDMYGKCRSLDDALRFFHGMGERNSVSWGAAIAGCVQNEQYTRGMELFVQMQRLGLGV 250

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371
           S  ++       +    +   +Q+H +  K  F    V V +A+ D+Y K   +  +   
Sbjct: 251 SQPAYASAFRSCAAMPCLSTARQLHAHAIKNVFSSDRV-VGTAIVDVYAKAGNLVDARRA 309

Query: 372 FESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431
           F   P  ++E CN++M  L+ +G   +A+++F FM   G+G D ++LS    A +     
Sbjct: 310 FIGLPHHNVETCNAMMVGLVRTGLGAEAMQLFQFMTRSGVGFDVISLSGVFSACAEVKGY 369

Query: 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMN 491
             G    +HC A+KSGF+ ++ V  +++D Y +C  +  ++ VF+++   + V + +I+ 
Sbjct: 370 FQG--LQVHCLAVKSGFDVDVCVRNAILDLYGKCKALVEAYLVFQEMEQRDSVSWNAIIA 427

Query: 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMKSVYGI 550
              +N    + +  L  M++ G+ PD  T+  VL  C     ++ G +V   ++KS  G+
Sbjct: 428 ALEQNECYEDTIAHLNEMLRSGMEPDDFTYGSVLKACAGLQSLEYGLVVHGKAIKSGLGL 487

Query: 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610
           DA     S ++DM  + G + +A++L  +  GG + + W+S++    +       +R  +
Sbjct: 488 DAFVS--STVVDMYCKCGAITEAQKLHDRI-GGQELVSWNSIISGFSLTKQSEEAQRFFS 544

Query: 611 ILMEL--EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
            ++++  +P D   Y+ V +  + +   E+  QI    + +++  D
Sbjct: 545 EMLDMGVKP-DHFTYATVLDTCANLATIELGKQIHGQIIKQEMLGD 589


>gi|449464466|ref|XP_004149950.1| PREDICTED: LOW QUALITY PROTEIN: uncharacterized protein LOC101216349
            [Cucumis sativus]
          Length = 1830

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 163/614 (26%), Positives = 306/614 (49%), Gaps = 43/614 (7%)

Query: 58   GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117
            G + SA+ +FD+MP  D   + ++I            +  Y+ M     +     FS +L
Sbjct: 1166 GDVRSARMVFDQMPNPDFYAWKVMIRWYFLNDLFVDVIPFYNRMRMSFRECDNIIFSIIL 1225

Query: 118  SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
              CS      EG ++HC+++ +G G + ++ + L+D+Y + G    +  +F+E+ ++N+ 
Sbjct: 1226 KACSELREIVEGRKVHCQIVKVG-GPDSFVMTGLIDMYGKCGQVECSSAVFEEIMDKNVV 1284

Query: 178  TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
            +W  M+  + + +  +E L ++N+M+   VE N  +   ++   +    L +GK +H + 
Sbjct: 1285 SWTSMIAGYVQNNCAEEGLVLFNRMRDALVESNPFTLGSIINAFTKLRALHQGKWVHGYA 1344

Query: 238  IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            IK    +++ F+A   +D Y  CG   +A+  +D +P  D++SW  ++  Y       D 
Sbjct: 1345 IK-NIAELSSFLATTFLDMYVKCGQTRDARMIYDELPTIDLVSWTVMIVGYTQARQPNDG 1403

Query: 298  LELF---FRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            L LF    R  L      ++ F + + F                              +A
Sbjct: 1404 LRLFADEIRSDLLPNSALLQVFFQRVRFL-----------------------------NA 1434

Query: 355  LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
            L DMY KC+ I  + A+F     + +   NS+++    +G+  DA+ +F  M    +  D
Sbjct: 1435 LIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRLFNQMRSYSLAPD 1494

Query: 415  EVTLSTTLKALSVSASANLGSCRL---LHCCAIKSG-FESNIAVSCSLMDAYSRCGHIEL 470
             +TL +TL     SASA LG+ ++   LH  ++K G F SN+ +  +L++ Y++CG    
Sbjct: 1495 AITLVSTL-----SASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCGDARS 1549

Query: 471  SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530
            +  VF+ +   N++ +++++ GY   G G  +L +   M++  L P++V F  VL+ C++
Sbjct: 1550 ARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLSACSY 1609

Query: 531  SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590
            SGMV+EG   F SM   Y      +HY+CM+D+L R+G LD+A + +++ P   D  ++ 
Sbjct: 1610 SGMVEEGGRYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRDVSLYG 1669

Query: 591  SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650
            + L  C ++    +G  V   +++L   +   Y  VSN Y+  G++    ++R+  L R 
Sbjct: 1670 AFLHGCGLYSRFDLGEVVVREMLQLHRNEACYYVLVSNLYASDGKWGQVNEVRDLMLQRG 1729

Query: 651  LTRDIGHSLIEVNS 664
            L +  G+SL+E N+
Sbjct: 1730 LNKVPGYSLVETNA 1743



 Score =  136 bits (343), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/463 (22%), Positives = 218/463 (47%), Gaps = 35/463 (7%)

Query: 51   IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
            ID + K G +  +  +F+E+  +++V++  +I+G  +    ++ L L++ M    ++ + 
Sbjct: 1259 IDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALVESNP 1318

Query: 111  STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
             T  S+++  +      +G  +H   +     L+ ++ +  +D+Y++ G +  A  ++DE
Sbjct: 1319 FTLGSIINAFTKLRALHQGKWVHGYAIKNIAELSSFLATTFLDMYVKCGQTRDARMIYDE 1378

Query: 171  LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            LP  +L +W +M+  + +  +P++ LR++       + PN                    
Sbjct: 1379 LPTIDLVSWTVMIVGYTQARQPNDGLRLFADEIRSDLLPN-------------------- 1418

Query: 231  KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
                S ++++ +  V     NAL+D Y+ C ++ +A   F  +   DVI+WNS++S YA 
Sbjct: 1419 ----SALLQVFFQRVRFL--NALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQ 1472

Query: 291  YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +DAL LF +M+     P   + V  L+ ++  G +  G  +H Y  K G    +++
Sbjct: 1473 NGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLY 1532

Query: 351  VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
            + +AL + Y KC    S+  VF+S   +++   ++++      G+   ++ +F  M+ E 
Sbjct: 1533 IGTALLNFYAKCGDARSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKED 1592

Query: 411  IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIEL 470
            +  +EV  +T L A S S     G  R          F  ++     ++D  +R G ++ 
Sbjct: 1593 LKPNEVIFTTVLSACSYSGMVEEGG-RYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDE 1651

Query: 471  SHQVFEKIP-SPNVVCFTSIMNG---YSRNGMG----REALDM 505
            +    +K+P   +V  + + ++G   YSR  +G    RE L +
Sbjct: 1652 ALDFIKKMPVQRDVSLYGAFLHGCGLYSRFDLGEVVVREMLQL 1694



 Score =  130 bits (327), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 94/408 (23%), Positives = 180/408 (44%), Gaps = 30/408 (7%)

Query: 130  IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
            I+ H  ++  G   NL   + LV +Y  +G    A  +FD++P  +   W +M+R +   
Sbjct: 1137 IKFHGLLIVHGLIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVMIRWYFLN 1196

Query: 190  SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
                +V+  YN+M+    E + + F  +++ CS    + EG+++H  ++K+G  D   FV
Sbjct: 1197 DLFVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVGGPDS--FV 1254

Query: 250  ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
               L+D Y  CG +  +   F+ I   +V+SW S+++ Y   +   + L LF RM+    
Sbjct: 1255 MTGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEGLVLFNRMRDALV 1314

Query: 310  RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
              +  +    +N  ++   ++ GK +HGY  K      S  + +   DMY KC     + 
Sbjct: 1315 ESNPFTLGSIINAFTKLRALHQGKWVHGYAIK-NIAELSSFLATTFLDMYVKCGQTRDAR 1373

Query: 370  AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
             +++  P   L     ++     +    D + +F          DE+             
Sbjct: 1374 MIYDELPTIDLVSWTVMIVGYTQARQPNDGLRLFA---------DEI------------- 1411

Query: 430  SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
                    LL   A+   F   +    +L+D Y++C  I  ++ +F  +   +V+ + S+
Sbjct: 1412 -----RSDLLPNSALLQVFFQRVRFLNALIDMYAKCHTISDAYAIFHGVLEKDVITWNSM 1466

Query: 490  MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537
            ++GY++NG   +AL +   M    L PD +T +  L+     G ++ G
Sbjct: 1467 ISGYAQNGSAYDALRLFNQMRSYSLAPDAITLVSTLSASATLGAIQVG 1514



 Score = 89.4 bits (220), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 66/239 (27%), Positives = 116/239 (48%), Gaps = 11/239 (4%)

Query: 48   NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
            N  ID + K   ++ A  +F  +  +D++T+N +ISG  +      AL L+++M S+ + 
Sbjct: 1433 NALIDMYAKCHTISDAYAIFHGVLEKDVITWNSMISGYAQNGSAYDALRLFNQMRSYSLA 1492

Query: 108  ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALD 166
              A T  S LS  +  G    G  +H   +  G F  NLYIG+ L++ Y + G +  A  
Sbjct: 1493 PDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCGDARSARM 1552

Query: 167  LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
            +FD +  +N+ TW+ M+  +         L +++ M  E ++PN + F  ++  CS   +
Sbjct: 1553 VFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLSACSYSGM 1612

Query: 227  LDEGKQLHSHVIKLGWVDVNIFVANA-----LVDFYSACGSLIEAKKSFDFIPVDDVIS 280
            ++EG +    +I+    D N FV +      +VD  +  G L EA      +PV   +S
Sbjct: 1613 VEEGGRYFKSMIQ----DYN-FVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRDVS 1666



 Score = 58.5 bits (140), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 93/197 (47%), Gaps = 4/197 (2%)

Query: 1    MLSTKLLPRVRT-ITTLAPTCT-SIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSG 58
            M S  L P   T ++TL+ + T   + + SSL   S        N+Y     ++ + K G
Sbjct: 1486 MRSYSLAPDAITLVSTLSASATLGAIQVGSSLHAYSVKGGLFSSNLYIGTALLNFYAKCG 1545

Query: 59   HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
               SA+ +FD M  ++++T++ +I G G       +L ++  M+   +K +   F++VLS
Sbjct: 1546 DARSARMVFDSMGVKNIITWSAMIGGYGVQGDGSGSLSIFSNMLKEDLKPNEVIFTTVLS 1605

Query: 119  VCSNAGFYTEGIQ-IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNL 176
             CS +G   EG +     +    F  ++   + +VDL  R G    ALD   ++P +R++
Sbjct: 1606 ACSYSGMVEEGGRYFKSMIQDYNFVPSMKHYACMVDLLARSGKLDEALDFIKKMPVQRDV 1665

Query: 177  ATWNLMLRAFCELSRPD 193
            + +   L      SR D
Sbjct: 1666 SLYGAFLHGCGLYSRFD 1682



 Score = 42.0 bits (97), Expect = 1.2,   Method: Compositional matrix adjust.
 Identities = 40/192 (20%), Positives = 81/192 (42%), Gaps = 7/192 (3%)

Query: 430  SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            S N+ +    H   I  G   N+     L+  Y   G +  +  VF+++P+P+   +  +
Sbjct: 1130 SLNIDTLIKFHGLLIVHGLIGNLLCDTKLVGVYGALGDVRSARMVFDQMPNPDFYAWKVM 1189

Query: 490  MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
            +  Y  N +  + +     M       D + F  +L  C+    + EG+ V   +  V G
Sbjct: 1190 IRWYFLNDLFVDVIPFYNRMRMSFRECDNIIFSIILKACSELREIVEGRKVHCQIVKVGG 1249

Query: 550  IDADRQHYSCMIDMLGRAGILDKA----EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605
             D+     + +IDM G+ G ++ +    EE++ +       M+   +  +C   G  ++ 
Sbjct: 1250 PDSFVM--TGLIDMYGKCGQVECSSAVFEEIMDKNVVSWTSMIAGYVQNNCAEEG-LVLF 1306

Query: 606  RRVANILMELEP 617
             R+ + L+E  P
Sbjct: 1307 NRMRDALVESNP 1318


>gi|242034539|ref|XP_002464664.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
 gi|241918518|gb|EER91662.1| hypothetical protein SORBIDRAFT_01g023020 [Sorghum bicolor]
          Length = 650

 Score =  259 bits (663), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 152/489 (31%), Positives = 266/489 (54%), Gaps = 37/489 (7%)

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            P+ L+F ++++ C+       G  +  HV KLG+   ++FV NA V F+S  GS++ A+
Sbjct: 118 RPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGF-SADVFVVNAGVHFWSVSGSMVLAR 176

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASR 325
           + FD  P  DV+SWN+++  Y    L  +ALELF+R+    K  RP   + +  ++  ++
Sbjct: 177 RLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVRPDEVTMIGAVSGCAQ 236

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE------------ 373
            G++  GK++H +V   G    +V + +A+ DMY KC  +E + +VFE            
Sbjct: 237 MGDLELGKRLHEFVDSKGV-RCTVRLMNAVMDMYVKCGSLELAKSVFERIDNKTVVSWTT 295

Query: 374 -------------------SAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
                                P R +   N+LM   + +   K+A+ +F  M +  +  +
Sbjct: 296 MIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQESKVDPN 355

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
           E+T+   L A S   +  +G    +H    +     ++A+  SL+D Y++CG+I+ +  +
Sbjct: 356 EITMVNLLSACSQLGALEMG--MWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIKKAICI 413

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F++IP  N + +T+++ G + +G   EA++  + MI  GL PD++TF+ VL+ C H+G+V
Sbjct: 414 FKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACCHAGLV 473

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
           KEG+  F+ M   Y ++   +HYSCMID+LGRAG LD+AE+L+   P   D ++W +L  
Sbjct: 474 KEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVWGALFF 533

Query: 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654
           +CR+HGN  +G + A  L+EL+P D  +Y  ++N Y+E    + + ++R       + + 
Sbjct: 534 ACRMHGNITLGEKAAMKLVELDPSDSGIYVLLANMYAEANMRKKADKVRVMMRHLGVEKV 593

Query: 655 IGHSLIEVN 663
            G S IE+N
Sbjct: 594 PGCSCIELN 602



 Score =  146 bits (368), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 107/433 (24%), Positives = 195/433 (45%), Gaps = 38/433 (8%)

Query: 92  KQALYLYDEMV-SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
           +  L LY  ++ S   +    TF  +L  C+   +   G  +   V  LGF  ++++ + 
Sbjct: 102 RHCLPLYRALLCSSSARPDHLTFPFLLKACARLQYRPYGAAVLGHVQKLGFSADVFVVNA 161

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG--VE 208
            V  +   G  V A  LFDE P R++ +WN ++  +     P E L ++ ++  +G  V 
Sbjct: 162 GVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLVEDGKAVR 221

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL----- 263
           P+ ++    V GC+    L+ GK+LH  V   G V   + + NA++D Y  CGSL     
Sbjct: 222 PDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKG-VRCTVRLMNAVMDMYVKCGSLELAKS 280

Query: 264 --------------------------IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
                                      +A+  FD +P  DV  WN++++ Y       +A
Sbjct: 281 VFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEA 340

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           + LF  MQ  +  P+  + V  L+  S+ G +  G  +H Y+ +    + SV + ++L D
Sbjct: 341 IALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQL-YLSVALGTSLVD 399

Query: 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT 417
           MY KC  I+ ++ +F+  P ++     +++  L + G+  +A+E F  M+D G+  DE+T
Sbjct: 400 MYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEIT 459

Query: 418 LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477
               L A   +     G  +       K   E  +     ++D   R GH++ + Q+   
Sbjct: 460 FIGVLSACCHAGLVKEGR-QFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNT 518

Query: 478 IP-SPNVVCFTSI 489
           +P  P+ V + ++
Sbjct: 519 MPMDPDAVVWGAL 531



 Score =  121 bits (303), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 86/367 (23%), Positives = 173/367 (47%), Gaps = 34/367 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  +  +  SG +  A++LFDE PARD+V++N LI G  +   P++AL L+  +V
Sbjct: 155 DVFVVNAGVHFWSVSGSMVLARRLFDESPARDVVSWNTLIGGYVRSGLPREALELFWRLV 214

Query: 103 SHG--IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM---- 156
             G  ++    T    +S C+  G    G ++H  V S G    + + + ++D+Y+    
Sbjct: 215 EDGKAVRPDEVTMIGAVSGCAQMGDLELGKRLHEFVDSKGVRCTVRLMNAVMDMYVKCGS 274

Query: 157 ---------------------------RMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
                                      R+G    A  LFDE+PER++  WN ++  + + 
Sbjct: 275 LELAKSVFERIDNKTVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQN 334

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
            +  E + ++++M+   V+PN ++   ++  CS    L+ G  +H H I    + +++ +
Sbjct: 335 KQGKEAIALFHEMQESKVDPNEITMVNLLSACSQLGALEMGMWVH-HYIDRHQLYLSVAL 393

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
             +LVD Y+ CG++ +A   F  IP  + ++W +++   A++    +A+E F RM     
Sbjct: 394 GTSLVDMYAKCGNIKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGL 453

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
           +P   +F+  L+     G V  G+Q    + +       +   S + D+ G+   ++ + 
Sbjct: 454 QPDEITFIGVLSACCHAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAE 513

Query: 370 AVFESAP 376
            +  + P
Sbjct: 514 QLVNTMP 520



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 125/243 (51%), Gaps = 1/243 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
            + S    I    + G +  A+ LFDEMP RD+  +N L++G  + +  K+A+ L+ EM 
Sbjct: 289 TVVSWTTMIVGHARLGMMEDARMLFDEMPERDVFPWNALMAGYVQNKQGKEAIALFHEMQ 348

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
              +  +  T  ++LS CS  G    G+ +H  +      L++ +G+ LVD+Y + G   
Sbjct: 349 ESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGNIK 408

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
           +A+ +F E+P++N  TW  M+         DE +  + +M   G++P+ ++F  ++  C 
Sbjct: 409 KAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSACC 468

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISW 281
              L+ EG+Q  S + +   ++  +   + ++D     G L EA++  + +P+D D + W
Sbjct: 469 HAGLVKEGRQFFSLMHEKYHLERKMKHYSCMIDLLGRAGHLDEAEQLVNTMPMDPDAVVW 528

Query: 282 NSI 284
            ++
Sbjct: 529 GAL 531



 Score = 60.1 bits (144), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 62/132 (46%), Gaps = 1/132 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M  +K+ P   T+  L   C+ +  L   + +  Y   +   L++      +D + K G+
Sbjct: 347 MQESKVDPNEITMVNLLSACSQLGALEMGMWVHHYIDRHQLYLSVALGTSLVDMYAKCGN 406

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           +  A  +F E+P ++ +T+  +I G     H  +A+  +  M+  G++    TF  VLS 
Sbjct: 407 IKKAICIFKEIPDKNALTWTAMICGLANHGHADEAIEYFQRMIDLGLQPDEITFIGVLSA 466

Query: 120 CSNAGFYTEGIQ 131
           C +AG   EG Q
Sbjct: 467 CCHAGLVKEGRQ 478


>gi|297829922|ref|XP_002882843.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
 gi|297328683|gb|EFH59102.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata]
          Length = 627

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/451 (32%), Positives = 248/451 (54%), Gaps = 8/451 (1%)

Query: 215 CY--MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272
           CY  ++  C     L EG+++H+H+IK  ++    ++   L+ FY  C  L +A+K  D 
Sbjct: 53  CYDALLNACLDKRALREGQRVHAHMIKTRYLPAT-YLRTRLLIFYGKCDCLEDARKVLDE 111

Query: 273 IPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332
           +P  +V+SW +++S Y+      +AL +F  M     +P+  +F   L    R   +  G
Sbjct: 112 MPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLTSCIRASGLALG 171

Query: 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392
           KQIHG + K  +D   + V S+L DMY K   IE +  +FE  P R +  C +++     
Sbjct: 172 KQIHGLIVKWNYD-SHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQ 230

Query: 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI 452
            G  ++A+EMF  +  EG+  + VT ++ L ALS  A  + G  +  HC  ++       
Sbjct: 231 LGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHG--KQAHCHVLRRELPFYA 288

Query: 453 AVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI-Q 511
            +  SL+D YS+CG++  + ++F+ +P    + + +++ GYS++G+GRE L++  +M  +
Sbjct: 289 VLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDE 348

Query: 512 RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM-KSVYGIDADRQHYSCMIDMLGRAGIL 570
           + + PD VT L VL+GC+H  M   G  +++ M    YGI  D +HY C++DMLGRAG +
Sbjct: 349 KRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRI 408

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           D+A E +++ P      +  SLL +CRVH +  IG  V + L+E+EP +   Y  +SN Y
Sbjct: 409 DEAFEFIKRMPSKPTAGVLGSLLGACRVHLSVDIGEYVGHRLIEIEPENAGNYVILSNLY 468

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIE 661
           +  G +E    +R   + + +T++ G S I+
Sbjct: 469 ASAGRWEDVNNVRAMMMQKAVTKEPGRSWIQ 499



 Score =  157 bits (397), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 179/341 (52%), Gaps = 13/341 (3%)

Query: 45  YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
           Y   R +  + K   L  A+K+ DEMP +++V++  +IS   +  H  +AL ++ EM+  
Sbjct: 87  YLRTRLLIFYGKCDCLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRS 146

Query: 105 GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
             K +  TF++VL+ C  A     G QIH  ++   +  ++++GS L+D+Y + G    A
Sbjct: 147 DGKPNEFTFATVLTSCIRASGLALGKQIHGLIVKWNYDSHIFVGSSLLDMYAKAGQIEEA 206

Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            ++F+ LPER++ +   ++  + +L   +E L M+ ++++EG+ PN +++  ++   S  
Sbjct: 207 REIFECLPERDVVSCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGL 266

Query: 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
            LLD GKQ H HV++   +     + N+L+D YS CG+L  A++ FD +P    ISWN++
Sbjct: 267 ALLDHGKQAHCHVLRRE-LPFYAVLQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAM 325

Query: 285 VSIYADYDLIFDALELFFRMQ-LCRKRPSIRSFVEFLNFASR-----TG-NVYFGKQIHG 337
           +  Y+ + L  + LELF  M+   R +P   + +  L+  S      TG ++Y G     
Sbjct: 326 LVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGE 385

Query: 338 YVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
           Y  K   +H        + DM G+   I+ +    +  P +
Sbjct: 386 YGIKPDTEH-----YGCIVDMLGRAGRIDEAFEFIKRMPSK 421



 Score =  151 bits (381), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 187/382 (48%), Gaps = 3/382 (0%)

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           EMV  G +     + ++L+ C +     EG ++H  ++   +    Y+ + L+  Y +  
Sbjct: 41  EMVMLGPEIGFHCYDALLNACLDKRALREGQRVHAHMIKTRYLPATYLRTRLLIFYGKCD 100

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  + DE+PE+N+ +W  M+  + +     E L ++ +M     +PN  +F  ++ 
Sbjct: 101 CLEDARKVLDEMPEKNVVSWTAMISRYSQTGHSSEALSVFAEMMRSDGKPNEFTFATVLT 160

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C     L  GKQ+H  ++K  + D +IFV ++L+D Y+  G + EA++ F+ +P  DV+
Sbjct: 161 SCIRASGLALGKQIHGLIVKWNY-DSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVV 219

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           S  +I++ YA   L  +ALE+F R+Q    RP+  ++   L   S    +  GKQ H +V
Sbjct: 220 SCTAIIAGYAQLGLDEEALEMFQRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHV 279

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
            +      +V +Q++L DMY KC  +  +  +F++ P R+    N+++      G  ++ 
Sbjct: 280 LRRELPFYAV-LQNSLIDMYSKCGNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREV 338

Query: 400 VEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           +E+F  M DE  +  D VTL   L   S     + G        A + G + +      +
Sbjct: 339 LELFRLMRDEKRVKPDAVTLLAVLSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCI 398

Query: 459 MDAYSRCGHIELSHQVFEKIPS 480
           +D   R G I+ + +  +++PS
Sbjct: 399 VDMLGRAGRIDEAFEFIKRMPS 420



 Score =  106 bits (264), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 63/237 (26%), Positives = 121/237 (51%), Gaps = 5/237 (2%)

Query: 39  NPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLY 98
           N   +I+  +  +D + K+G +  A+++F+ +P RD+V+   +I+G  +    ++AL ++
Sbjct: 182 NYDSHIFVGSSLLDMYAKAGQIEEAREIFECLPERDVVSCTAIIAGYAQLGLDEEALEMF 241

Query: 99  DEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158
             + S G++ +  T++S+L+  S       G Q HC VL         + + L+D+Y + 
Sbjct: 242 QRLQSEGMRPNYVTYASLLTALSGLALLDHGKQAHCHVLRRELPFYAVLQNSLIDMYSKC 301

Query: 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYM 217
           G    A  LFD +PER   +WN ML  + +     EVL ++  M+ E  V+P+ ++   +
Sbjct: 302 GNLSYAQRLFDNMPERTAISWNAMLVGYSKHGLGREVLELFRLMRDEKRVKPDAVTLLAV 361

Query: 218 VRGCSIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFI 273
           + GCS G + D G  ++  ++   + +  +      +VD     G + EA   F+FI
Sbjct: 362 LSGCSHGKMEDTGLSIYDGMVAGEYGIKPDTEHYGCIVDMLGRAGRIDEA---FEFI 415


>gi|356568485|ref|XP_003552441.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g23330-like [Glycine max]
          Length = 1011

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 158/560 (28%), Positives = 280/560 (50%), Gaps = 51/560 (9%)

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           L+ LY +      A  LFDE+P+RN  TW +++  F      + V  ++ +M+A+G  PN
Sbjct: 330 LLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGACPN 389

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
             +   +++ CS+   L  GK +H+ +++ G +DV++ + N+++D Y  C     A++ F
Sbjct: 390 QYTLSSVLKCCSLDNNLQLGKGVHAWMLRNG-IDVDVVLGNSILDLYLKCKVFEYAERLF 448

Query: 271 DFIPVDDVISWNSIVSIY---------------------ADYDLIFD----------ALE 299
           + +   DV+SWN ++  Y                       ++ I D          ALE
Sbjct: 449 ELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALE 508

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
             + M  C    S  +F   L  AS   +V  G+Q+HG V K GFD     ++S+L +MY
Sbjct: 509 QLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGF-IRSSLVEMY 567

Query: 360 GKCNVIESSVAVFESAPGRSLECCN----------------SLMTSLLHSGNIKDAVEMF 403
            KC  ++ +  +    P   L   N                S+++  + +G  +D ++ F
Sbjct: 568 CKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTF 627

Query: 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463
             MV E + +D  T++T + A + +     G  R +H    K G   +  V  SL+D YS
Sbjct: 628 RLMVRELVVVDIRTVTTIISACANAGILEFG--RHVHAYVQKIGHRIDAYVGSSLIDMYS 685

Query: 464 RCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523
           + G ++ +  VF +   PN+V +TS+++GY+ +G G  A+ + E M+ +G+IP++VTFL 
Sbjct: 686 KSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLG 745

Query: 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG 583
           VL  C+H+G+++EG   F  MK  Y I+   +H + M+D+ GRAG L K +  + +    
Sbjct: 746 VLNACSHAGLIEEGCRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGIS 805

Query: 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643
               +W S L SCR+H N  +G+ V+ +L+++ P D   Y  +SN  +    ++ + ++R
Sbjct: 806 HLTSVWKSFLSSCRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVR 865

Query: 644 ETALARKLTRDIGHSLIEVN 663
                R + +  G S I++ 
Sbjct: 866 SLMHQRGVKKQPGQSWIQLK 885



 Score =  151 bits (382), Expect = 9e-34,   Method: Compositional matrix adjust.
 Identities = 121/469 (25%), Positives = 212/469 (45%), Gaps = 50/469 (10%)

Query: 47  SNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI 106
           +N  +  + KS ++  A+KLFDE+P R+  T+ +LISG  +    +    L+ EM + G 
Sbjct: 327 ANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGSSEMVFNLFREMQAKGA 386

Query: 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD 166
             +  T SSVL  CS       G  +H  +L  G  +++ +G+ ++DLY++      A  
Sbjct: 387 CPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLRNGIDVDVVLGNSILDLYLKCKVFEYAER 446

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE---------------GVEPNG 211
           LF+ + E ++ +WN+M+ A+      ++ L M+ ++  +               G E + 
Sbjct: 447 LFELMNEGDVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHA 506

Query: 212 LSFCYMVRGC---------SIGMLL-------DEGKQLHSHVIKLGWVDVNIFVANALVD 255
           L   Y +  C         SI ++L       + G+QLH  V+K G+ D + F+ ++LV+
Sbjct: 507 LEQLYCMVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGF-DSDGFIRSSLVE 565

Query: 256 FYSACGSLIEAKKSFDFIPVD----------------DVISWNSIVSIYADYDLIFDALE 299
            Y  CG + +A      +P+D                 ++SW S+VS Y       D L+
Sbjct: 566 MYCKCGRMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLK 625

Query: 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359
            F  M        IR+    ++  +  G + FG+ +H YV K+G      +V S+L DMY
Sbjct: 626 TFRLMVRELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIG-HRIDAYVGSSLIDMY 684

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K   ++ +  VF  +   ++    S+++     G    A+ +F  M+++GI  +EVT  
Sbjct: 685 SKSGSLDDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFL 744

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
             L A S +     G CR              +    S++D Y R GH+
Sbjct: 745 GVLNACSHAGLIEEG-CRYFRMMKDAYCINPGVEHCTSMVDLYGRAGHL 792



 Score =  112 bits (279), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 182/385 (47%), Gaps = 38/385 (9%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISG---CGKFRHPKQALYLYD 99
           ++ S N  I  ++++G +  +  +F  +P +D+V++N ++ G   CG  RH  + LY   
Sbjct: 455 DVVSWNIMIGAYLRAGDVEKSLDMFRRLPYKDVVSWNTIVDGLLQCGYERHALEQLYC-- 512

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
            MV  G + SA TFS  L + S+      G Q+H  VL  GF  + +I S LV++Y + G
Sbjct: 513 -MVECGTEFSAVTFSIALILASSLSHVELGRQLHGMVLKFGFDSDGFIRSSLVEMYCKCG 571

Query: 160 PSVRA--------LDLFD--------ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMK 203
              +A        LD+          + P+  + +W  M+  +    + ++ L+ +  M 
Sbjct: 572 RMDKASIILRDVPLDVLRKGNARVSYKEPKAGIVSWGSMVSGYVWNGKYEDGLKTFRLMV 631

Query: 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263
            E V  +  +   ++  C+   +L+ G+ +H++V K+G   ++ +V ++L+D YS  GSL
Sbjct: 632 RELVVVDIRTVTTIISACANAGILEFGRHVHAYVQKIG-HRIDAYVGSSLIDMYSKSGSL 690

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
            +A   F      +++ W S++S YA +     A+ LF  M      P+  +F+  LN  
Sbjct: 691 DDAWMVFRQSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNAC 750

Query: 324 SRTGNV-----YFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC-NVIESSVAVFESAPG 377
           S  G +     YF      Y    G +H      +++ D+YG+  ++ ++   +F++   
Sbjct: 751 SHAGLIEEGCRYFRMMKDAYCINPGVEHC-----TSMVDLYGRAGHLTKTKNFIFKNG-- 803

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEM 402
             +    S+  S L S  +   VEM
Sbjct: 804 --ISHLTSVWKSFLSSCRLHKNVEM 826



 Score = 69.3 bits (168), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 56/230 (24%), Positives = 109/230 (47%), Gaps = 6/230 (2%)

Query: 10  VRTITTLAPTCTSIVPLSSSLLLDSYCQP-NPQLNIYSSNRTIDDFVKSGHLNSAKKLFD 68
           +RT+TT+   C +   L     + +Y Q    +++ Y  +  ID + KSG L+ A  +F 
Sbjct: 639 IRTVTTIISACANAGILEFGRHVHAYVQKIGHRIDAYVGSSLIDMYSKSGSLDDAWMVFR 698

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           +    ++V +  +ISG         A+ L++EM++ GI  +  TF  VL+ CS+AG   E
Sbjct: 699 QSNEPNIVMWTSMISGYALHGQGMHAIGLFEEMLNQGIIPNEVTFLGVLNACSHAGLIEE 758

Query: 129 GIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALD-LFDELPERNLATWNLMLRA 185
           G + + R++   + +N  +   + +VDLY R G   +  + +F        + W   L +
Sbjct: 759 GCR-YFRMMKDAYCINPGVEHCTSMVDLYGRAGHLTKTKNFIFKNGISHLTSVWKSFLSS 817

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
            C L +  E+ +  ++M  +    +  ++  +   C+     DE  ++ S
Sbjct: 818 -CRLHKNVEMGKWVSEMLLQVAPSDPGAYVLLSNMCASNHRWDEAARVRS 866



 Score = 55.8 bits (133), Expect = 8e-05,   Method: Compositional matrix adjust.
 Identities = 35/155 (22%), Positives = 76/155 (49%), Gaps = 2/155 (1%)

Query: 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498
           LH   +K+G    +  +  L+  Y++  ++  + ++F++IP  N   +T +++G++R G 
Sbjct: 311 LHALYVKNGSLQTLNPANHLLTLYAKSNNMAHAQKLFDEIPQRNTQTWTILISGFARAGS 370

Query: 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558
                ++   M  +G  P++ T   VL  C+    ++ G+ V   M    GID D    +
Sbjct: 371 SEMVFNLFREMQAKGACPNQYTLSSVLKCCSLDNNLQLGKGVHAWMLR-NGIDVDVVLGN 429

Query: 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
            ++D+  +  + + AE L +     GD + W+ ++
Sbjct: 430 SILDLYLKCKVFEYAERLFELM-NEGDVVSWNIMI 463


>gi|33146592|dbj|BAC79788.1| putative pentatricopeptide (PPR) repeat-containing protein [Oryza
           sativa Japonica Group]
          Length = 749

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 177/561 (31%), Positives = 287/561 (51%), Gaps = 9/561 (1%)

Query: 90  HPKQALYLYDEM---VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNL 145
           HPK    L DEM   + H    +   F  +L+            Q H     LGF   NL
Sbjct: 35  HPKTTSGLNDEMRDFLRHADARTPRAFVQLLAAQPPRPSAAAADQCHAAATKLGFLASNL 94

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           +  + L+  Y R      A  LFD++P R   TWN ++      + P   +  + +M   
Sbjct: 95  FATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARA 154

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           GV P   S   ++  C        G  LHS  +  G+   ++ V  ALVD Y+ C  L  
Sbjct: 155 GVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFC-ASVVVGTALVDMYAKCHHLGA 213

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A++ F  +   +V ++ ++V+ +       DA+ L   M+     P++ ++   L+  + 
Sbjct: 214 AQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFAS 273

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
             ++  GKQ+H  V K G +H    V SAL  MY KC ++E+ V V  S   +     NS
Sbjct: 274 PEDIDHGKQVHCAVLKKGLEHDQF-VLSALVTMYSKCGILENFVKVQMSVSCQDQVSFNS 332

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++ L   G  K+A + F  M   G  +D  T ++ LKA  + +S++L   R +H   +K
Sbjct: 333 VISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKA--IGSSSSLLEGRQVHTLILK 390

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            G++S + V  SL+  Y+R G I  S+ VF  + +PN+V + S+M+G +++G G+E ++M
Sbjct: 391 IGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 450

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV-YGIDADRQHYSCMIDML 564
            E M +  + PD +TFL VL  C+H G+V +G   FN MK   Y + A  +HY+CM+D+L
Sbjct: 451 FEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLL 510

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624
           GRAG L++AE L+   P      ++ +LL +C++HGN  I  RV+  L+EL P D +V+ 
Sbjct: 511 GRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHV 570

Query: 625 QVSNFYSEIGEFEVSMQIRET 645
           Q+SN ++  G +  + +IRE 
Sbjct: 571 QLSNAFAGDGRWGNAAEIREA 591



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 193/384 (50%), Gaps = 2/384 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++++   +  + +S  L  A+ LFD+MPAR  VT+N LI G  +   P  A+  +  M 
Sbjct: 93  NLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMA 152

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +AS+ SSVL  C        G  +H   L  GF  ++ +G+ LVD+Y +     
Sbjct: 153 RAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLG 212

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F E+ E+N+AT+  ++  F    RP + + +  +M+  GV PN +++  ++   +
Sbjct: 213 AAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFA 272

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               +D GKQ+H  V+K G ++ + FV +ALV  YS CG L    K    +   D +S+N
Sbjct: 273 SPEDIDHGKQVHCAVLKKG-LEHDQFVLSALVTMYSKCGILENFVKVQMSVSCQDQVSFN 331

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S++S  +      +A + F  M+       + +F   L     + ++  G+Q+H  + K+
Sbjct: 332 SVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKI 391

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G+D   V VQ++L  MY +   I  S  VF S    +L   NSLM+     G+ K+ VEM
Sbjct: 392 GYD-SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 450

Query: 403 FGFMVDEGIGLDEVTLSTTLKALS 426
           F  M    +  D +T  + L A S
Sbjct: 451 FEQMRRLHVQPDHITFLSVLTACS 474



 Score = 83.2 bits (204), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 57/223 (25%), Positives = 107/223 (47%), Gaps = 1/223 (0%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF 113
           + K G L +  K+   +  +D V++N +ISG       K+A   + EM  HG      TF
Sbjct: 306 YSKCGILENFVKVQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTF 365

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           +SVL    ++    EG Q+H  +L +G+   + + + L+ +Y R G    +  +F  +  
Sbjct: 366 ASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAIGESNGVFISMEA 425

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            NL +WN ++    +     EV+ M+ +M+   V+P+ ++F  ++  CS   L+D+G + 
Sbjct: 426 PNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEY 485

Query: 234 HSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            + +   G+ V         +VD     G L EA+   + +P+
Sbjct: 486 FNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPI 528



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 2/144 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + + G +  +  +F  M A ++V++N L+SGC +  H K+ + ++++M    ++
Sbjct: 401 NSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQ 460

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVRAL 165
               TF SVL+ CS+ G   +G++    +   G+  G      + +VDL  R G    A 
Sbjct: 461 PDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAE 520

Query: 166 DLFDELPERNLATWNLMLRAFCEL 189
            L + +P +  A+    L + C++
Sbjct: 521 YLINGMPIKPGASVYRALLSACQI 544


>gi|449460752|ref|XP_004148109.1| PREDICTED: pentatricopeptide repeat-containing protein At4g39952,
           mitochondrial-like [Cucumis sativus]
          Length = 784

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 178/663 (26%), Positives = 321/663 (48%), Gaps = 14/663 (2%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDD-----FV 55
           M ++  LP   T+  +  TC  ++  +  + +        +L ++  N  I       + 
Sbjct: 129 MRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGL---TSKLGLFVGNSAIGSSFIYMYS 185

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSS 115
           K GH+ SA  +F E+  +D+VT+  LI G  +     + L    EM   G   +  T  S
Sbjct: 186 KCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGGTPNYKTIGS 245

Query: 116 VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
               C +     EG  +H   L  GF     + S ++ +Y R G    A   F +L +++
Sbjct: 246 GFQACVDLDALVEGKCLHGLALKNGFLCFEVVKSTILSMYSRCGSPEEAYRCFCKLDQKD 305

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           L +W  ++    +     E L ++ +M+A  + P+ +    M+ G      + EGK  H+
Sbjct: 306 LISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSDRIFEGKAFHA 365

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            ++K       I   NAL+  Y   G L  A K F          W++++  Y++     
Sbjct: 366 RILKQCCALSGI-THNALLSMYCKFGHLGTANKIFHSFHKSSE-DWSTMILGYSNMGQKE 423

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
             +     M L  + P + S V  ++  S+ G +  G+ IH Y  K      +V V ++L
Sbjct: 424 KCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIKNSIIE-NVSVANSL 482

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            DMYGK   + ++  +F     R +   N+L++S   SG + +A+ +F  MV E +  ++
Sbjct: 483 MDMYGKSGHVTATWRIFHRTLQRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNK 542

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           VT    L A +  AS + G    +H    ++GFESNI +  +L+D Y++CG +E S ++F
Sbjct: 543 VTCIIVLSACAHLASLDEG--EKIHQYIKENGFESNITIRTALIDMYAKCGELETSRKLF 600

Query: 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535
                 +V+ +  +++ Y  +G    A+++ ++M +  + P+  TFL +L+ CNH+G V 
Sbjct: 601 NSTEERDVILWNVMISNYGMHGHVESAMEIFQLMEESNIKPNAQTFLSLLSACNHTGHVL 660

Query: 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS 595
           EG+ +F+ M+  YGI+   +HY+ +ID+LGR+G L+ AE L+   P   D  +W SLL +
Sbjct: 661 EGRHLFDRMQK-YGIEPSLKHYASIIDLLGRSGSLEAAEALVLSMPITPDGTVWGSLLSA 719

Query: 596 CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
           C++H    +G R+A   +E +P +   Y  +S+ YS +G ++   ++R+    R + +  
Sbjct: 720 CKIHNEFEVGVRLARYAIESDPKNDGYYIILSDLYSCLGRWDEVEKVRDMMKKRGVEKRA 779

Query: 656 GHS 658
           G S
Sbjct: 780 GWS 782



 Score =  174 bits (442), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 134/542 (24%), Positives = 260/542 (47%), Gaps = 18/542 (3%)

Query: 66  LFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125
           LF  + ++D+  +N +I         ++A   Y +M +     +  T   V+S C+    
Sbjct: 94  LFRLIHSKDIFLWNSIIQSHFSNGDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMM 153

Query: 126 YTEGIQIHCRVLSLG-FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184
           +  G+ IH     LG F  N  IGS  + +Y + G    A  +F E+  +++ TW  ++ 
Sbjct: 154 FNHGMNIHGLTSKLGLFVGNSAIGSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIV 213

Query: 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244
            + + +     L+   +M   G  PN  +     + C     L EGK LH   +K G++ 
Sbjct: 214 GYVQNNESGRGLKCLFEMHRIGGTPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLC 273

Query: 245 VNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304
             + V + ++  YS CGS  EA + F  +   D+ISW SI+++++ + L+ + L LF+ M
Sbjct: 274 FEV-VKSTILSMYSRCGSPEEAYRCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEM 332

Query: 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-----GFDHGSVHVQSALTDMY 359
           Q     P        L     +  ++ GK  H  + K      G  H      +AL  MY
Sbjct: 333 QASEIIPDEIVISCMLMGFGNSDRIFEGKAFHARILKQCCALSGITH------NALLSMY 386

Query: 360 GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
            K   + ++  +F S   +S E  ++++    + G  +  +     M+  G   D  +L 
Sbjct: 387 CKFGHLGTANKIFHSFH-KSSEDWSTMILGYSNMGQKEKCISFLREMLLLGREPDLNSLV 445

Query: 420 TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + + + S   + N+G  R +HC AIK+    N++V+ SLMD Y + GH+  + ++F +  
Sbjct: 446 SVISSCSQVGAINIG--RSIHCYAIKNSIIENVSVANSLMDMYGKSGHVTATWRIFHRTL 503

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +V+ + ++++ Y ++G+  EA+ + + M++  + P+KVT + VL+ C H   + EG+ 
Sbjct: 504 QRDVISWNTLISSYKQSGILAEAIILFDKMVKEKVYPNKVTCIIVLSACAHLASLDEGEK 563

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
           +   +K   G +++    + +IDM  + G L+ + +L   T    D ++W+ ++ +  +H
Sbjct: 564 IHQYIKE-NGFESNITIRTALIDMYAKCGELETSRKLFNSTE-ERDVILWNVMISNYGMH 621

Query: 600 GN 601
           G+
Sbjct: 622 GH 623



 Score =  116 bits (290), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 105/475 (22%), Positives = 199/475 (41%), Gaps = 14/475 (2%)

Query: 130 IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCEL 189
           +Q H  +++ G   N++  + L+  Y        +  LF  +  +++  WN ++++    
Sbjct: 57  LQFHSLIITTGNSNNVFFATKLMAFYAYHRKPAFSTHLFRLIHSKDIFLWNSIIQSHFSN 116

Query: 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFV 249
                    Y +M+A    PN  +   +V  C+  M+ + G  +H    KLG    N  +
Sbjct: 117 GDYQRAFDFYLQMRASSSLPNQFTVPMVVSTCAELMMFNHGMNIHGLTSKLGLFVGNSAI 176

Query: 250 ANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309
            ++ +  YS CG +  A   F  I V DV++W +++  Y   +     L+  F M     
Sbjct: 177 GSSFIYMYSKCGHVESASIMFSEITVKDVVTWTALIVGYVQNNESGRGLKCLFEMHRIGG 236

Query: 310 RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSV 369
            P+ ++             +  GK +HG   K GF    V V+S +  MY +C   E + 
Sbjct: 237 TPNYKTIGSGFQACVDLDALVEGKCLHGLALKNGFLCFEV-VKSTILSMYSRCGSPEEAY 295

Query: 370 AVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA 429
             F     + L    S++      G + + + +F  M    I  DE+ +S  L     S 
Sbjct: 296 RCFCKLDQKDLISWTSIIAVHSKFGLMSECLHLFWEMQASEIIPDEIVISCMLMGFGNSD 355

Query: 430 SANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCF 486
               G     R+L  C   SG   N     +L+  Y + GH+  ++++F      +    
Sbjct: 356 RIFEGKAFHARILKQCCALSGITHN-----ALLSMYCKFGHLGTANKIFHSFHKSSEDWS 410

Query: 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF-NSMK 545
           T I+ GYS  G   + +  L  M+  G  PD  + + V++ C+  G +  G+ +   ++K
Sbjct: 411 TMIL-GYSNMGQKEKCISFLREMLLLGREPDLNSLVSVISSCSQVGAINIGRSIHCYAIK 469

Query: 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600
           +   I  +    + ++DM G++G +     +  +T    D + W++L+ S +  G
Sbjct: 470 N--SIIENVSVANSLMDMYGKSGHVTATWRIFHRTL-QRDVISWNTLISSYKQSG 521


>gi|413944103|gb|AFW76752.1| hypothetical protein ZEAMMB73_846363 [Zea mays]
          Length = 562

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 163/562 (29%), Positives = 294/562 (52%), Gaps = 7/562 (1%)

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVL--SLGFGLNLYIGSPLVDLYMRMG 159
           +++  K +A+ +SS+L     A  + +G  +H R +  S     +L++ + LV  Y   G
Sbjct: 3   LANAPKSAAALYSSLLQSSMGANAFRQGKSVHHRAIITSSASPPDLHLNTKLVIFYSHFG 62

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A  +FD +P R++ +W  M+  + + SRP E L ++  M   G  PN  +F   VR
Sbjct: 63  DVAAARRVFDGMPHRSVVSWTAMVSGYAKNSRPQEALDLFAFMLRSGARPNQFTFGSAVR 122

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            C+       G+Q+H+   K G    ++FV +AL+D +  CGS+ +A++ F  +   D++
Sbjct: 123 ACTGARCARSGEQIHACAAK-GRFAGDMFVQSALMDMHLRCGSVGDARRLFAEMERKDLV 181

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           SWNS++  + + +   DAL LF  M      P   +F   L        ++  + IH  +
Sbjct: 182 SWNSLMRGFVEREHCNDALGLFDSMLRDGMLPDHFTFGSALKACGAISVLFNVELIHACI 241

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD- 398
            KLG+   +V + S L D Y KC  + S+  +++S     L    +L++      N  D 
Sbjct: 242 IKLGYWDENVAIAS-LIDSYAKCRSLSSARVIYDSMCEPDLVSSTALISGYSMDRNYSDD 300

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A+++F  +  +G+ +D + LS+ L   +  AS   G+   +H    K     ++A+  +L
Sbjct: 301 AMKLFCKIHRKGLRIDAILLSSLLGVCANVASIKFGT--QIHAYMHKKQPMGDLALDNAL 358

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D Y++ G    S + F+++P+ NV+ +TS++   +++G G +A+ +   M + G+ P+ 
Sbjct: 359 VDMYAKSGEFLDSRRAFDEMPNRNVISWTSLITSCAQHGFGEDAVTLFARMEEDGVKPND 418

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           VTFL +L+ C+HSGM+ +G   F SM S YGID   +HYS  +D+L R G L+ A  L+Q
Sbjct: 419 VTFLSLLSACSHSGMMNKGMEYFTSMMSKYGIDPRFKHYSSAVDLLARGGQLEDAWMLVQ 478

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
            T       M+ ++L +C+VHGN  +G   A  L+ ++P     Y+ ++N Y+E   +E 
Sbjct: 479 NTNTECKSSMYGTMLGACKVHGNMPLGETAAKNLLSIDPESSVNYAVLANMYAESHLWED 538

Query: 639 SMQIRETALARKLTRDIGHSLI 660
           + + R+  +     ++ G S+I
Sbjct: 539 AQRTRKLLVETSKGKEAGFSVI 560



 Score =  186 bits (471), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 127/462 (27%), Positives = 230/462 (49%), Gaps = 11/462 (2%)

Query: 29  SLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKF 88
           +++  S   P+  LN     + +  +   G + +A+++FD MP R +V++  ++SG  K 
Sbjct: 37  AIITSSASPPDLHLN----TKLVIFYSHFGDVAAARRVFDGMPHRSVVSWTAMVSGYAKN 92

Query: 89  RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIG 148
             P++AL L+  M+  G + +  TF S +  C+ A     G QIH       F  ++++ 
Sbjct: 93  SRPQEALDLFAFMLRSGARPNQFTFGSAVRACTGARCARSGEQIHACAAKGRFAGDMFVQ 152

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208
           S L+D+++R G    A  LF E+  ++L +WN ++R F E    ++ L +++ M  +G+ 
Sbjct: 153 SALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFDSMLRDGML 212

Query: 209 PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268
           P+  +F   ++ C    +L   + +H+ +IKLG+ D N+ +A +L+D Y+ C SL  A+ 
Sbjct: 213 PDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAIA-SLIDSYAKCRSLSSARV 271

Query: 269 SFDFIPVDDVISWNSIVSIYA-DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG 327
            +D +   D++S  +++S Y+ D +   DA++LF ++     R         L   +   
Sbjct: 272 IYDSMCEPDLVSSTALISGYSMDRNYSDDAMKLFCKIHRKGLRIDAILLSSLLGVCANVA 331

Query: 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLM 387
           ++ FG QIH Y+ K     G + + +AL DMY K      S   F+  P R++    SL+
Sbjct: 332 SIKFGTQIHAYMHKKQ-PMGDLALDNALVDMYAKSGEFLDSRRAFDEMPNRNVISWTSLI 390

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
           TS    G  +DAV +F  M ++G+  ++VT  + L A S S   N G          K G
Sbjct: 391 TSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKG-MEYFTSMMSKYG 449

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
            +       S +D  +R G +E     +  + + N  C +S+
Sbjct: 450 IDPRFKHYSSAVDLLARGGQLE---DAWMLVQNTNTECKSSM 488



 Score =  115 bits (289), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 181/352 (51%), Gaps = 9/352 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  +  +D  ++ G +  A++LF EM  +D+V++N L+ G  +  H   AL L+D M+
Sbjct: 148 DMFVQSALMDMHLRCGSVGDARRLFAEMERKDLVSWNSLMRGFVEREHCNDALGLFDSML 207

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPS 161
             G+     TF S L  C           IH  ++ LG+   N+ I S L+D Y +    
Sbjct: 208 RDGMLPDHFTFGSALKACGAISVLFNVELIHACIIKLGYWDENVAIAS-LIDSYAKCRSL 266

Query: 162 VRALDLFDELPERNLATWNLMLRAFC-ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
             A  ++D + E +L +   ++  +  + +  D+ ++++ K+  +G+  + +    ++  
Sbjct: 267 SSARVIYDSMCEPDLVSSTALISGYSMDRNYSDDAMKLFCKIHRKGLRIDAILLSSLLGV 326

Query: 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
           C+    +  G Q+H+++ K   +  ++ + NALVD Y+  G  ++++++FD +P  +VIS
Sbjct: 327 CANVASIKFGTQIHAYMHKKQPMG-DLALDNALVDMYAKSGEFLDSRRAFDEMPNRNVIS 385

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ-IHGYV 339
           W S+++  A +    DA+ LF RM+    +P+  +F+  L+  S +G +  G +     +
Sbjct: 386 WTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGMEYFTSMM 445

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391
           +K G D    H  SA+ D+  +   +E +  + ++    + EC +S+  ++L
Sbjct: 446 SKYGIDPRFKHYSSAV-DLLARGGQLEDAWMLVQNT---NTECKSSMYGTML 493



 Score = 69.7 bits (169), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 76/149 (51%), Gaps = 2/149 (1%)

Query: 13  ITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71
           +++L   C ++  +     + +Y  +  P  ++   N  +D + KSG    +++ FDEMP
Sbjct: 320 LSSLLGVCANVASIKFGTQIHAYMHKKQPMGDLALDNALVDMYAKSGEFLDSRRAFDEMP 379

Query: 72  ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131
            R+++++  LI+ C +    + A+ L+  M   G+K +  TF S+LS CS++G   +G++
Sbjct: 380 NRNVISWTSLITSCAQHGFGEDAVTLFARMEEDGVKPNDVTFLSLLSACSHSGMMNKGME 439

Query: 132 IHCRVLS-LGFGLNLYIGSPLVDLYMRMG 159
               ++S  G        S  VDL  R G
Sbjct: 440 YFTSMMSKYGIDPRFKHYSSAVDLLARGG 468


>gi|357521772|ref|XP_003612377.1| Selenium binding protein-like protein [Medicago truncatula]
 gi|355513712|gb|AES95335.1| Selenium binding protein-like protein [Medicago truncatula]
          Length = 611

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 145/504 (28%), Positives = 272/504 (53%), Gaps = 11/504 (2%)

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           LF ++   N+  +N M++ + + + P   L +Y +M   G  P+  +F ++++ CS    
Sbjct: 63  LFRQIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYD 122

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
              GK +HS ++K G+ + N++VA  L++ Y  C ++    K FD IP  +V++W  +++
Sbjct: 123 QVSGKCVHSCILKSGF-EANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLIN 181

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD- 345
            Y   D   +ALE+F  M       +  + V  L   +R  +V  G+ +H  V K G+D 
Sbjct: 182 GYVINDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDP 241

Query: 346 -----HGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400
                + +V + +A+ +MY KC  +  +  +F   P R++   N ++ +        +A+
Sbjct: 242 FVFASNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEAL 301

Query: 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460
            +F +M+  G   D+ T  + L   +      LG    +H   +KS    +IA++ +L+D
Sbjct: 302 GLFFYMLANGFCPDKATFLSVLSVCARRCVLALGET--VHAYLLKSNMAKDIALATALLD 359

Query: 461 AYSRCGHIELSHQVFEK-IPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDK 518
            Y++ G +  + ++F   +   +VV +TS++N  + +G G EAL + ++M +   L+PD 
Sbjct: 360 MYAKNGELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDH 419

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +T++ VL  C+H G+V+E Q  FN M   YGI  +++HYSCM+D+L RAG   +AE+L++
Sbjct: 420 ITYIGVLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSCMVDLLSRAGHFREAEKLME 479

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
                 +  +W +LL  C++H N  +  +V   L ELEP+   +Y+ +SN Y+  G++E 
Sbjct: 480 TMSIRPNIAIWGALLNGCQIHENIPVASQVKVRLAELEPIQSGIYALLSNIYANSGKWEE 539

Query: 639 SMQIRETALARKLTRDIGHSLIEV 662
             + R+    +++ + IGHS +E+
Sbjct: 540 VNRTRKMMKHKRIAKTIGHSSVEM 563



 Score =  171 bits (434), Expect = 9e-40,   Method: Compositional matrix adjust.
 Identities = 124/493 (25%), Positives = 230/493 (46%), Gaps = 14/493 (2%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSG---HLNSAKKLFD 68
           TI +L P C +++   +S  L           I   ++ ID  V S    + N A  LF 
Sbjct: 6   TILSLLPKCKTLLQFKTSHALILTTPTTINTKIIPLSKLIDFCVDSHFDEYFNYANLLFR 65

Query: 69  EMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128
           ++ + ++  +N +I G  K  +P  +L+LY +M+ +G      TF  VL  CS       
Sbjct: 66  QIHSPNVYIFNSMIKGYAKSNNPTMSLHLYKQMLQNGYSPDHFTFPFVLKACSFIYDQVS 125

Query: 129 GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
           G  +H  +L  GF  N+Y+ + L+++Y+        L +FD++P+ N+  W  ++  +  
Sbjct: 126 GKCVHSCILKSGFEANVYVATGLLNMYVECKNMESGLKVFDKIPKWNVVAWTCLINGYVI 185

Query: 189 LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW------ 242
             +P E L ++ +M   GVE N ++    +  C+    +D G+ +H  V K G+      
Sbjct: 186 NDQPREALEVFKEMGRWGVEANEVTMVNALIACARCRDVDTGRWVHERVCKAGYDPFVFA 245

Query: 243 VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFF 302
            + N+ +A A+V+ Y+ CG L  A++ F+ +P  ++++WN +++ Y  Y+   +AL LFF
Sbjct: 246 SNSNVILATAIVEMYAKCGWLNVARELFNKMPERNIVAWNCMINAYNQYERYNEALGLFF 305

Query: 303 RMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKC 362
            M      P   +F+  L+  +R   +  G+ +H Y+ K       + + +AL DMY K 
Sbjct: 306 YMLANGFCPDKATFLSVLSVCARRCVLALGETVHAYLLKSNMA-KDIALATALLDMYAKN 364

Query: 363 NVIESSVAVF-ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-DEGIGLDEVTLST 420
             + S+  +F  S   + +    S++ +L   G+  +A+ +F  M  D  +  D +T   
Sbjct: 365 GELGSAQKIFNNSLEKKDVVMWTSMINALAIHGHGNEALSLFQIMQEDSSLVPDHITYIG 424

Query: 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP- 479
            L A S          +                 SC ++D  SR GH   + ++ E +  
Sbjct: 425 VLFACSHVGLVEEAQKQFNLMTKSYGILPEKEHYSC-MVDLLSRAGHFREAEKLMETMSI 483

Query: 480 SPNVVCFTSIMNG 492
            PN+  + +++NG
Sbjct: 484 RPNIAIWGALLNG 496


>gi|449531597|ref|XP_004172772.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g08210-like [Cucumis sativus]
          Length = 680

 Score =  259 bits (662), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 187/668 (27%), Positives = 324/668 (48%), Gaps = 50/668 (7%)

Query: 20  CTSIVPLSSSLLLDSYCQPNPQLN-IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTY 78
           C ++        + +Y +    LN ++ +N  I  + +  ++  A+K+FDEM  R++VT+
Sbjct: 13  CATVRAFKRGNAIHAYLRKFGGLNDVFLANNLISMYAEFFNVRDAEKVFDEMTDRNIVTW 72

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
             ++S       P +A+ LY++M       +   +S+VL  C   G    G  I  R+  
Sbjct: 73  TTMVSAFTDGGRPYEAIRLYNDM-PKSETPNGYMYSAVLKACGFVGDLGLGKLIQERIYE 131

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
                +  + + L+D++++ G    A+++F  +      TWN+++  + +     E  ++
Sbjct: 132 DKLQADTILMNSLMDMFVKCGSLNDAVEVFHNISRATTTTWNIIVSGYSKAGLMVEAEKL 191

Query: 199 YNKMKAEGVEPNGLSFCYMVRG-----------------------------CSIGM---- 225
           ++ M      PN +S+  M+ G                             C++ +    
Sbjct: 192 FHCMP----HPNVVSWNSMIAGFADNGSQRALEFVSMMHKRCIKLDDFTFPCALKISALH 247

Query: 226 -LLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK------SFDFIPVDDV 278
            LL  GKQ+HS+V KLG+ + + F  +AL+D YS C  LIEA K      SF+    D++
Sbjct: 248 GLLFIGKQVHSYVTKLGY-ESSCFTLSALIDMYSNCNDLIEAVKLFDQHSSFNASISDNL 306

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
             WNS++S Y   +    AL L   +          +F   L       +   G Q+HG 
Sbjct: 307 ALWNSMLSGYVINNCDQAALNLLSEIHCSGALLDSYTFGGALKVCINLLSRRVGLQLHGL 366

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           +   G++   V V S L D+Y K   I+ ++A+F   P + +   + L+      G    
Sbjct: 367 IVTCGYELDYV-VGSILVDLYAKLANIDDALAIFHRLPRKDIIAWSGLIMGCAQIGLNWL 425

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A  MF  M++    +D   +ST LK  S  AS  L S + +H   +KSG+E       SL
Sbjct: 426 AFSMFKGMLELVNEIDHFVISTILKVCSNLAS--LRSGKQVHALCVKSGYEMEGFTITSL 483

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +D YS+CG IE +  +F      ++V +T I+ G  +NG   EA+     MI+ G+ P++
Sbjct: 484 LDMYSKCGEIEDALTLFCCEQEKDIVSWTGIIVGCGQNGKAAEAVRFFHEMIRSGITPNE 543

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
           +TFL VL+ C ++G+V+E + +FNSMKSVYG++   +HY CM+D+L   G+ ++AE+L+ 
Sbjct: 544 ITFLGVLSACRYAGLVEEARSIFNSMKSVYGLEPHLEHYCCMVDLLASVGLPEEAEKLIA 603

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   +   W +LL +C    +  +  RVA+ L+E  P D + Y  +SN Y+ +G +  
Sbjct: 604 NMPFEPNQTTWRTLLGACGTRNDTKLINRVADGLLEATPNDPSTYVTLSNAYASLGMWHT 663

Query: 639 SMQIRETA 646
             + RE +
Sbjct: 664 LSKAREAS 671


>gi|356550971|ref|XP_003543853.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39680-like [Glycine max]
          Length = 703

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 153/524 (29%), Positives = 294/524 (56%), Gaps = 13/524 (2%)

Query: 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMY-NKMKAEGV 207
           + L++LY + G S  A  LFD + +RN+ +W+ ++  +       EVL ++ N +  +  
Sbjct: 65  NSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLVSLDSA 124

Query: 208 EPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            PN   F  ++  C+    + EGKQ H +++K G + ++ +V NAL+  YS C  +  A 
Sbjct: 125 YPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLL-LHQYVKNALIHMYSRCFHVDSAM 183

Query: 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM-QLCRKRPSIRSFVEFLNFASRT 326
           +  D +P DDV S+NSI+S   +     +A ++  RM   C    S+ ++V  L   ++ 
Sbjct: 184 QILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSV-TYVSVLGLCAQI 242

Query: 327 GNVYFGKQIHGYVTKLG--FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN 384
            ++  G QIH  + K G  FD   V V S L D YGKC  + ++   F+    R++    
Sbjct: 243 RDLQLGLQIHAQLLKTGLVFD---VFVSSTLIDTYGKCGEVLNARKQFDGLRDRNVVAWT 299

Query: 385 SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI 444
           +++T+ L +G+ ++ + +F  M  E    +E T +  L A +   +   G   LLH   +
Sbjct: 300 AVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGD--LLHGRIV 357

Query: 445 KSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD 504
            SGF++++ V  +L++ YS+ G+I+ S+ VF  + + +V+ + +++ GYS +G+G++AL 
Sbjct: 358 MSGFKNHLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGLGKQALL 417

Query: 505 MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564
           + + M+  G  P+ VTF+ VL+ C H  +V+EG   F+ +   + ++   +HY+CM+ +L
Sbjct: 418 VFQDMMSAGECPNYVTFIGVLSACVHLALVQEGFYYFDQIMKKFDVEPGLEHYTCMVALL 477

Query: 565 GRAGILDKAEELLQQTPG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623
           GRAG+LD+AE  ++ T     D + W +LL +C +H N  +G+++   +++++P D   Y
Sbjct: 478 GRAGLLDEAENFMKTTTQVKWDVVAWRTLLNACHIHRNYNLGKQITETVIQMDPHDVGTY 537

Query: 624 SQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           + +SN +++  +++  ++IR+    R + ++ G S +++ N+ H
Sbjct: 538 TLLSNMHAKARKWDGVVKIRKLMKERNIKKEPGASWLDIRNNTH 581



 Score =  153 bits (387), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 109/389 (28%), Positives = 196/389 (50%), Gaps = 3/389 (0%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q +   +I   N  I+ + K G    A+KLFD M  R++V+++ L+ G        + L 
Sbjct: 54  QTSKDSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLG 113

Query: 97  LYDEMVS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY 155
           L+  +VS      +   F+ VLS C+++G   EG Q H  +L  G  L+ Y+ + L+ +Y
Sbjct: 114 LFRNLVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMY 173

Query: 156 MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215
            R      A+ + D +P  ++ ++N +L A  E     E  ++  +M  E V  + +++ 
Sbjct: 174 SRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYV 233

Query: 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
            ++  C+    L  G Q+H+ ++K G V  ++FV++ L+D Y  CG ++ A+K FD +  
Sbjct: 234 SVLGLCAQIRDLQLGLQIHAQLLKTGLV-FDVFVSSTLIDTYGKCGEVLNARKQFDGLRD 292

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +V++W ++++ Y       + L LF +M+L   RP+  +F   LN  +    + +G  +
Sbjct: 293 RNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNACASLVALAYGDLL 352

Query: 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGN 395
           HG +   GF +  + V +AL +MY K   I+SS  VF +   R +   N+++    H G 
Sbjct: 353 HGRIVMSGFKNHLI-VGNALINMYSKSGNIDSSYNVFSNMMNRDVITWNAMICGYSHHGL 411

Query: 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424
            K A+ +F  M+  G   + VT    L A
Sbjct: 412 GKQALLVFQDMMSAGECPNYVTFIGVLSA 440



 Score =  134 bits (338), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 175/394 (44%), Gaps = 34/394 (8%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L+ Y  N  I  + +  H++SA ++ D +P  D+ +YN ++S   +     +A  +   M
Sbjct: 161 LHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFSYNSILSALVESGCRGEAAQVLKRM 220

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           V   +   + T+ SVL +C+       G+QIH ++L  G   ++++ S L+D Y + G  
Sbjct: 221 VDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDVFVSSTLIDTYGKCGEV 280

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
           + A   FD L +RN+  W  +L A+ +    +E L ++ KM+ E   PN  +F  ++  C
Sbjct: 281 LNARKQFDGLRDRNVVAWTAVLTAYLQNGHFEETLNLFTKMELEDTRPNEFTFAVLLNAC 340

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +  + L  G  LH  ++  G+ + ++ V NAL++ YS  G++  +   F  +   DVI+W
Sbjct: 341 ASLVALAYGDLLHGRIVMSGFKN-HLIVGNALINMYSKSGNIDSSYNVFSNMMNRDVITW 399

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N+++  Y+ + L   AL +F  M    + P+                         YVT 
Sbjct: 400 NAMICGYSHHGLGKQALLVFQDMMSAGECPN-------------------------YVTF 434

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           +G     VH+       Y      +  +  F+  PG     C   M +LL    + D  E
Sbjct: 435 IGVLSACVHLALVQEGFY----YFDQIMKKFDVEPGLEHYTC---MVALLGRAGLLDEAE 487

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
            F       +  D V   T L A  +  + NLG 
Sbjct: 488 NF-MKTTTQVKWDVVAWRTLLNACHIHRNYNLGK 520



 Score = 81.6 bits (200), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 69/274 (25%), Positives = 126/274 (45%), Gaps = 34/274 (12%)

Query: 312 SIRSFVEFLNFASRTGNVYFGKQIHGYV---TKLGFDHGSVHVQSALTDMYGKCNVIESS 368
           S++  V  L F++   ++ FGK IH  +    +   D     + S L ++Y KC   + +
Sbjct: 22  SLKEVVNLLKFSATAKSLRFGKTIHAQLVVRNQTSKDSDITQINS-LINLYSKCGQSKCA 80

Query: 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
             +F+    R++   ++LM   LH G + + + +F  +V     LD    +  +  + +S
Sbjct: 81  RKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRNLV----SLDSAYPNEYIFTIVLS 136

Query: 429 ASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVC 485
             A+ G     +  H   +KSG   +  V  +L+  YSRC H++ + Q+ + +P  +V  
Sbjct: 137 CCADSGRVKEGKQCHGYLLKSGLLLHQYVKNALIHMYSRCFHVDSAMQILDTVPGDDVFS 196

Query: 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-----------HSGMV 534
           + SI++    +G   EA  +L+ M+   +I D VT++ VL  C            H+ ++
Sbjct: 197 YNSILSALVESGCRGEAAQVLKRMVDECVIWDSVTYVSVLGLCAQIRDLQLGLQIHAQLL 256

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568
           K G LVF+   S           S +ID  G+ G
Sbjct: 257 KTG-LVFDVFVS-----------STLIDTYGKCG 278



 Score = 68.6 bits (166), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 56/214 (26%), Positives = 103/214 (48%), Gaps = 14/214 (6%)

Query: 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEV 508
           +S+I    SL++ YS+CG  + + ++F+++   NVV ++++M GY   G   E L +   
Sbjct: 58  DSDITQINSLINLYSKCGQSKCARKLFDRMLQRNVVSWSALMMGYLHKGEVLEVLGLFRN 117

Query: 509 MIQ-RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNS-MKSVYGIDADRQHYSCMIDMLGR 566
           ++      P++  F  VL+ C  SG VKEG+      +KS  G+   +   + +I M  R
Sbjct: 118 LVSLDSAYPNEYIFTIVLSCCADSGRVKEGKQCHGYLLKS--GLLLHQYVKNALIHMYSR 175

Query: 567 AGILDKAEELLQQTPGGGDCMMWSSLLRS-----CRVHGNEIIGRRVANILMELEPVDFA 621
              +D A ++L   P G D   ++S+L +     CR    +++ R V   ++     D  
Sbjct: 176 CFHVDSAMQILDTVP-GDDVFSYNSILSALVESGCRGEAAQVLKRMVDECVIW----DSV 230

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655
            Y  V    ++I + ++ +QI    L   L  D+
Sbjct: 231 TYVSVLGLCAQIRDLQLGLQIHAQLLKTGLVFDV 264


>gi|356513929|ref|XP_003525660.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g08070-like [Glycine max]
          Length = 736

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 165/573 (28%), Positives = 282/573 (49%), Gaps = 45/573 (7%)

Query: 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS---VRALDLFDELPER--NLATWNLMLRA 185
           QIH  ++  G    L+  S L++ +  + PS     AL LF  +  +  N+  WN ++RA
Sbjct: 43  QIHSLIIKSGLHNTLFAQSKLIE-FCALSPSRDLSYALSLFHSIHHQPPNIFIWNTLIRA 101

Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV 245
                 P   L ++++M   G+ PN  +F  + + C+      E KQLH+H +KL  + +
Sbjct: 102 HSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLHAHALKLA-LHL 160

Query: 246 NIFVANALVDFYSACGSLI-------------------------------EAKKSFDFIP 274
           +  V  +L+  YS  G L                                +A++ FD IP
Sbjct: 161 HPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVDDARRLFDEIP 220

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             DV+SWN++++ Y       +AL  F RMQ     P+  + V  L+      ++  GK 
Sbjct: 221 AKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACGHLRSLELGKW 280

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           I  +V   GF   ++ + +AL DMY KC  I ++  +F+    + +   N+++    H  
Sbjct: 281 IGSWVRDRGFG-KNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWNTMIGGYCHLS 339

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK----SGFES 450
             ++A+ +F  M+ E +  ++VT    L A +   + +LG  + +H    K    +G  +
Sbjct: 340 LYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLG--KWVHAYIDKNLKGTGNVN 397

Query: 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510
           N+++  S++  Y++CG +E++ QVF  + S ++  + ++++G + NG    AL + E MI
Sbjct: 398 NVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERALGLFEEMI 457

Query: 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570
             G  PD +TF+ VL+ C  +G V+ G   F+SM   YGI    QHY CMID+L R+G  
Sbjct: 458 NEGFQPDDITFVGVLSACTQAGFVELGHRYFSSMNKDYGISPKLQHYGCMIDLLARSGKF 517

Query: 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630
           D+A+ L+       D  +W SLL +CR+HG    G  VA  L ELEP +   Y  +SN Y
Sbjct: 518 DEAKVLMGNMEMEPDGAIWGSLLNACRIHGQVEFGEYVAERLFELEPENSGAYVLLSNIY 577

Query: 631 SEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
           +  G ++   +IR     + + +  G + IE++
Sbjct: 578 AGAGRWDDVAKIRTKLNDKGMKKVPGCTSIEID 610



 Score =  159 bits (402), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 109/395 (27%), Positives = 187/395 (47%), Gaps = 35/395 (8%)

Query: 74  DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133
           ++  +N LI        P  +L+L+ +M+  G+  ++ TF S+   C+ +    E  Q+H
Sbjct: 91  NIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATHEAKQLH 150

Query: 134 CRVLSLGFGLNLYIGSPLVDLYMRMGP-----------SVR------------------- 163
              L L   L+ ++ + L+ +Y ++G            ++R                   
Sbjct: 151 AHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVSEGHVD 210

Query: 164 -ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  LFDE+P +++ +WN M+  + +  R +E L  + +M+   V PN  +   ++  C 
Sbjct: 211 DARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSVLSACG 270

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               L+ GK + S V   G+   N+ + NALVD YS CG +  A+K FD +   DVI WN
Sbjct: 271 HLRSLELGKWIGSWVRDRGF-GKNLQLVNALVDMYSKCGEIGTARKLFDGMEDKDVILWN 329

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           +++  Y    L  +AL LF  M      P+  +F+  L   +  G +  GK +H Y+ K 
Sbjct: 330 TMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLGKWVHAYIDKN 389

Query: 343 GFDHGSVHVQSALTD---MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
               G+V+  S  T    MY KC  +E +  VF S   RSL   N++++ L  +G+ + A
Sbjct: 390 LKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMISGLAMNGHAERA 449

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434
           + +F  M++EG   D++T    L A + +    LG
Sbjct: 450 LGLFEEMINEGFQPDDITFVGVLSACTQAGFVELG 484



 Score =  139 bits (349), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 93/301 (30%), Positives = 158/301 (52%), Gaps = 8/301 (2%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I  +V  GH++ A++LFDE+PA+D+V++N +I+G  +    ++AL  +  M    +  + 
Sbjct: 200 ITGYVSEGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQ 259

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
           ST  SVLS C +      G  I   V   GFG NL + + LVD+Y + G    A  LFD 
Sbjct: 260 STMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGEIGTARKLFDG 319

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           + ++++  WN M+  +C LS  +E L ++  M  E V PN ++F  ++  C+    LD G
Sbjct: 320 MEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPACASLGALDLG 379

Query: 231 KQLHSHVIK----LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
           K +H+++ K     G V+ N+ +  +++  Y+ CG +  A++ F  +    + SWN+++S
Sbjct: 380 KWVHAYIDKNLKGTGNVN-NVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRSLASWNAMIS 438

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
             A       AL LF  M     +P   +FV  L+  ++ G V  G   H Y + +  D+
Sbjct: 439 GLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELG---HRYFSSMNKDY 495

Query: 347 G 347
           G
Sbjct: 496 G 496



 Score = 85.9 bits (211), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 60/272 (22%), Positives = 123/272 (45%), Gaps = 5/272 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNP-QLNIYSSNRTIDDFVKSGH 59
           M    + P   T+ ++   C  +  L     + S+ +      N+   N  +D + K G 
Sbjct: 250 MQEADVSPNQSTMVSVLSACGHLRSLELGKWIGSWVRDRGFGKNLQLVNALVDMYSKCGE 309

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + +A+KLFD M  +D++ +N +I G       ++AL L++ M+   +  +  TF +VL  
Sbjct: 310 IGTARKLFDGMEDKDVILWNTMIGGYCHLSLYEEALVLFEVMLRENVTPNDVTFLAVLPA 369

Query: 120 CSNAGFYTEGIQIHCRV----LSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           C++ G    G  +H  +       G   N+ + + ++ +Y + G    A  +F  +  R+
Sbjct: 370 CASLGALDLGKWVHAYIDKNLKGTGNVNNVSLWTSIIVMYAKCGCVEVAEQVFRSMGSRS 429

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
           LA+WN M+         +  L ++ +M  EG +P+ ++F  ++  C+    ++ G +  S
Sbjct: 430 LASWNAMISGLAMNGHAERALGLFEEMINEGFQPDDITFVGVLSACTQAGFVELGHRYFS 489

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267
            + K   +   +     ++D  +  G   EAK
Sbjct: 490 SMNKDYGISPKLQHYGCMIDLLARSGKFDEAK 521



 Score = 59.3 bits (142), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 65/309 (21%), Positives = 134/309 (43%), Gaps = 40/309 (12%)

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM--YGKCNVIESSVAVFESAPG 377
           LN  ++  ++   KQIH  + K G  H ++  QS L +         +  ++++F S   
Sbjct: 29  LNLLAKCPDIPSLKQIHSLIIKSGL-HNTLFAQSKLIEFCALSPSRDLSYALSLFHSIHH 87

Query: 378 R--SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           +  ++   N+L+ +   +     ++ +F  M+  G+  +  T  +  K+ + S + +   
Sbjct: 88  QPPNIFIWNTLIRAHSLTPTPTSSLHLFSQMLHSGLYPNSHTFPSLFKSCAKSKATH--E 145

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGY-- 493
            + LH  A+K     +  V  SL+  YS+ G +  +  VF+K    + V FT+++ GY  
Sbjct: 146 AKQLHAHALKLALHLHPHVHTSLIHMYSQVGELRHARLVFDKSTLRDAVSFTALITGYVS 205

Query: 494 --------------------SRNGM-------GR--EALDMLEVMIQRGLIPDKVTFLCV 524
                               S N M       GR  EAL     M +  + P++ T + V
Sbjct: 206 EGHVDDARRLFDEIPAKDVVSWNAMIAGYVQSGRFEEALACFTRMQEADVSPNQSTMVSV 265

Query: 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584
           L+ C H   ++ G+ + + ++   G   + Q  + ++DM  + G +  A +L        
Sbjct: 266 LSACGHLRSLELGKWIGSWVRD-RGFGKNLQLVNALVDMYSKCGEIGTARKLFDGME-DK 323

Query: 585 DCMMWSSLL 593
           D ++W++++
Sbjct: 324 DVILWNTMI 332


>gi|326495618|dbj|BAJ85905.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 788

 Score =  259 bits (662), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 166/614 (27%), Positives = 315/614 (51%), Gaps = 11/614 (1%)

Query: 57  SGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSV 116
           +G ++ A++      +RD   +N++I G      P  AL  Y  M++ G +    TF  V
Sbjct: 55  AGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGARPDRFTFPVV 114

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGL-NLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175
           L  C+  G   EG   H   + LG    ++Y G+ L+  Y R+G    A  +FD +P R+
Sbjct: 115 LKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAERVFDGMPARD 174

Query: 176 LATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           + TWN M+  +         L  + +M +A  V+ +G+     +  C +   L +G+++H
Sbjct: 175 VVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLESALMQGREVH 234

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           ++VI+ G ++ ++ V  +++D Y  CG +  A+  F  +P   V++WN ++  YA  +  
Sbjct: 235 AYVIRHG-MEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCMIGGYALNERP 293

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +A + F +M+    +  + + +  L   ++T +  +G+ +HGY+T+  F    V +++A
Sbjct: 294 EEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYGRSVHGYITRRQF-LPHVVLETA 352

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L +MY K   ++SS  VF     ++L   N+++ + ++     +A+ +F  ++++ +  D
Sbjct: 353 LLEMYSKVGKVKSSEKVFGQMTTKTLVSWNNMIAAYMYKEMYMEAITLFLDLLNQPLYPD 412

Query: 415 EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQV 474
             T+S  + A  +     L  CR +H   I+ G+  N  +  ++M  Y+RCG +  S ++
Sbjct: 413 YFTMSAVVPAFVLLGL--LRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGDVLSSREI 470

Query: 475 FEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534
           F+K+ + +V+ + +++ GY+ +G GR AL+M   M   GL P++ TF+ VL  C+ SG+ 
Sbjct: 471 FDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTACSVSGLT 530

Query: 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594
            EG   FNSM+  YG+    +HY CM D+LGRAG L +  + ++  P      +W SLL 
Sbjct: 531 DEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFRVWGSLLT 590

Query: 595 SCRVHGNEIIGRRVANILMELEPVDF-----AVYSQVSNFYSEIGEFEVSMQIRETALAR 649
           + R   +  I    A  + +LE           Y  +S+ Y++ G ++   +I+     +
Sbjct: 591 ASRNRNDIDIAEYAAERIFQLEQDQLEHDNTGCYVLISSMYADAGRWKDVERIKSLMEEK 650

Query: 650 KLTRDIGHSLIEVN 663
            L R    S++E++
Sbjct: 651 GLRRTDPRSIVELH 664



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 109/472 (23%), Positives = 223/472 (47%), Gaps = 9/472 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM- 101
           ++Y+ N  +  + + G ++ A+++FD MPARD+VT+N ++ G         AL  + EM 
Sbjct: 143 DVYTGNSLLAFYARLGLVDDAERVFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMH 202

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
            +  ++       + L+ C       +G ++H  V+  G   ++ +G+ ++D+Y + G  
Sbjct: 203 EALEVQHDGVGIIAALAACCLESALMQGREVHAYVIRHGMEHDVKVGTSILDMYCKCGDI 262

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             A  +F  +P R + TWN M+  +    RP+E    + +MKAEG +   ++   ++  C
Sbjct: 263 ASAEGVFATMPSRTVVTWNCMIGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAAC 322

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +       G+ +H ++ +  ++  ++ +  AL++ YS  G +  ++K F  +    ++SW
Sbjct: 323 AQTESSLYGRSVHGYITRRQFLP-HVVLETALLEMYSKVGKVKSSEKVFGQMTTKTLVSW 381

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341
           N++++ Y   ++  +A+ LF  +      P   +    +      G +   +Q+H Y+ +
Sbjct: 382 NNMIAAYMYKEMYMEAITLFLDLLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIR 441

Query: 342 LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVE 401
           LG+   ++ + +A+  MY +C  + SS  +F+    + +   N+++      G  + A+E
Sbjct: 442 LGYGENTL-IMNAIMHMYARCGDVLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALE 500

Query: 402 MFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461
           MF  M   G+  +E T  + L A SVS   + G  +  +      G    I     + D 
Sbjct: 501 MFSEMKCNGLRPNESTFVSVLTACSVSGLTDEGWTQ-FNSMQRDYGMIPQIEHYGCMTDL 559

Query: 462 YSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512
             R G ++   Q  E +P  P    + S++   SRN   R  +D+ E   +R
Sbjct: 560 LGRAGDLKEVMQFIENMPIDPTFRVWGSLLTA-SRN---RNDIDIAEYAAER 607



 Score = 90.1 bits (222), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/336 (24%), Positives = 147/336 (43%), Gaps = 16/336 (4%)

Query: 251 NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            +LV  ++A G + +A+++       D    N ++   AD  L   AL  +  M     R
Sbjct: 46  KSLVLSHAAAGRMDDAQEALAAAGSRDAFLHNVVIRGLADAGLPGAALAAYAAMLAAGAR 105

Query: 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370
           P   +F   L   +R G +  G+  H    +LG     V+  ++L   Y +  +++ +  
Sbjct: 106 PDRFTFPVVLKCCARLGALDEGRAAHSAAIRLGVAAADVYTGNSLLAFYARLGLVDDAER 165

Query: 371 VFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE-GIGLDEVTLSTTLKALSVSA 429
           VF+  P R +   NS++   + +G    A+  F  M +   +  D V +   L A  + +
Sbjct: 166 VFDGMPARDVVTWNSMVDGYVSNGLGTLALVCFREMHEALEVQHDGVGIIAALAACCLES 225

Query: 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           +   G  R +H   I+ G E ++ V  S++D Y +CG I  +  VF  +PS  VV +  +
Sbjct: 226 ALMQG--REVHAYVIRHGMEHDVKVGTSILDMYCKCGDIASAEGVFATMPSRTVVTWNCM 283

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + GY+ N    EA D    M   G   + VT + +LA C  +     G       +SV+G
Sbjct: 284 IGGYALNERPEEAFDCFVQMKAEGHQVEVVTAINLLAACAQTESSLYG-------RSVHG 336

Query: 550 IDADRQHY------SCMIDMLGRAGILDKAEELLQQ 579
               RQ        + +++M  + G +  +E++  Q
Sbjct: 337 YITRRQFLPHVVLETALLEMYSKVGKVKSSEKVFGQ 372



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 46/188 (24%), Positives = 86/188 (45%), Gaps = 3/188 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           +L+  L P   T++ + P    +  L     + SY  +     N    N  +  + + G 
Sbjct: 404 LLNQPLYPDYFTMSAVVPAFVLLGLLRQCRQMHSYIIRLGYGENTLIMNAIMHMYARCGD 463

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + S++++FD+M A+D++++N +I G       + AL ++ EM  +G++ + STF SVL+ 
Sbjct: 464 VLSSREIFDKMAAKDVISWNTMIMGYAIHGQGRSALEMFSEMKCNGLRPNESTFVSVLTA 523

Query: 120 CSNAGFYTEG-IQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP-ERNLA 177
           CS +G   EG  Q +      G    +     + DL  R G     +   + +P +    
Sbjct: 524 CSVSGLTDEGWTQFNSMQRDYGMIPQIEHYGCMTDLLGRAGDLKEVMQFIENMPIDPTFR 583

Query: 178 TWNLMLRA 185
            W  +L A
Sbjct: 584 VWGSLLTA 591


>gi|449453244|ref|XP_004144368.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g49740-like [Cucumis sativus]
          Length = 735

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 168/611 (27%), Positives = 308/611 (50%), Gaps = 14/611 (2%)

Query: 37  QPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALY 96
           Q   + ++YS    +    K GH+  A ++FD MP  ++  +N +I+G  +      A+ 
Sbjct: 119 QEIEKPDVYSWTTLLSACTKMGHIEYASEMFDIMPKGNVACWNAMITGSAESGLDWVAMN 178

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
            + EM   G+K    +F+ +LS+C+       G Q+H  V+  G+     + + L+ +Y 
Sbjct: 179 TFYEMHKMGVKPDNYSFACILSLCTKE-IEDLGRQVHSSVIKAGYLRKTSVVNALITMYF 237

Query: 157 RMGPSVRALDLFD--ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214
            +     A ++F+  E   R+  T+N+M+     + R +E L M+  MK   + P  L+F
Sbjct: 238 SIENLEDAYEVFEGTESEVRDQITYNVMIDGLVCVRRNEEALIMFKDMKRACLSPTELTF 297

Query: 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274
             ++  CSI   +   +Q+HS  IKLG+    + V N+ +  Y++CG    A   F  + 
Sbjct: 298 VSIMSSCSI---IQVAQQVHSQAIKLGFESFTL-VGNSTITMYTSCGEFQAANAVFQMLI 353

Query: 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334
             D+ISWN+I+S Y   +    A+  F +MQ     P   +F   L  +     V   + 
Sbjct: 354 EKDLISWNAIISSYVQGNFGKSAVLAFLQMQRTGIGPDEFTFGSLLGVSEFIEIV---EM 410

Query: 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
           +H YV K G     + + +AL   Y KC  ++ S+ VF     +++   N+++   L +G
Sbjct: 411 VHAYVYKNGLIL-IIEILNALVSAYAKCRKVKQSLQVFSEINSKNIISWNTVIYGFLLNG 469

Query: 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
               A+E F  ++   +     TLS  L   +  ++ ++G  + +H   ++SG  S  ++
Sbjct: 470 LPLQALEHFSKLIMSKLKPSTFTLSIVLSICANISTLDIG--KQIHGYILRSGNSSETSL 527

Query: 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR-G 513
              L+  YS+CG +  S + F  +   ++V + SI++ Y+++G G+EA+D  + M     
Sbjct: 528 CNGLITMYSKCGLLGWSLRTFNVMIERDIVSWNSIISAYAQHGQGKEAVDCFKAMQDMPS 587

Query: 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573
           ++PD+ TF  +L+ C+H+G+V+E   + + M   Y         SC++D++GR+G +D+A
Sbjct: 588 IMPDQATFTTILSACSHAGLVEEACQILDIMLIDYRAVPSVDQLSCIVDLIGRSGYIDQA 647

Query: 574 EELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
           E +++    G    +W +L  +C  H N  +GR VA IL+E E  + +VY  +SN Y+  
Sbjct: 648 ESVIESAQYGEHTHVWWALFSACAAHENLRLGRIVARILLEKERDNPSVYVVLSNIYASA 707

Query: 634 GEFEVSMQIRE 644
           G +E +  +RE
Sbjct: 708 GCWEEAANVRE 718



 Score =  148 bits (374), Expect = 9e-33,   Method: Compositional matrix adjust.
 Identities = 149/633 (23%), Positives = 278/633 (43%), Gaps = 57/633 (9%)

Query: 56  KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH---GIKESAST 112
           K  H  ++ K   E  ++D++ YN L++   +      +L L+ ++ S     IK     
Sbjct: 3   KLQHAMNSLKTIAESASQDLLEYNRLLAELKRSSRYIDSLQLFTQIHSSHCFNIKPDHYN 62

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLY----------------- 155
            S+ L+VC+N      G Q+H   +  G     ++ + ++ LY                 
Sbjct: 63  LSTTLAVCANFRDIAFGSQLHGYAIRSGLKFYPHVANTVLSLYAKIEDFVSLKRGFQEIE 122

Query: 156 --------------MRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201
                          +MG    A ++FD +P+ N+A WN M+    E       +  + +
Sbjct: 123 KPDVYSWTTLLSACTKMGHIEYASEMFDIMPKGNVACWNAMITGSAESGLDWVAMNTFYE 182

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M   GV+P+  SF  ++  C+   + D G+Q+HS VIK G++     V NAL+  Y +  
Sbjct: 183 MHKMGVKPDNYSFACILSLCT-KEIEDLGRQVHSSVIKAGYLR-KTSVVNALITMYFSIE 240

Query: 262 SLIEAKKSFDFI--PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319
           +L +A + F+     V D I++N ++          +AL +F  M+     P+  +FV  
Sbjct: 241 NLEDAYEVFEGTESEVRDQITYNVMIDGLVCVRRNEEALIMFKDMKRACLSPTELTFVSI 300

Query: 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS 379
           +   S    +   +Q+H    KLGF+  ++   S +T MY  C   +++ AVF+    + 
Sbjct: 301 M---SSCSIIQVAQQVHSQAIKLGFESFTLVGNSTIT-MYTSCGEFQAANAVFQMLIEKD 356

Query: 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLL 439
           L   N++++S +     K AV  F  M   GIG DE T  + L       S  +    ++
Sbjct: 357 LISWNAIISSYVQGNFGKSAVLAFLQMQRTGIGPDEFTFGSLL-----GVSEFIEIVEMV 411

Query: 440 HCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMG 499
           H    K+G    I +  +L+ AY++C  ++ S QVF +I S N++ + +++ G+  NG+ 
Sbjct: 412 HAYVYKNGLILIIEILNALVSAYAKCRKVKQSLQVFSEINSKNIISWNTVIYGFLLNGLP 471

Query: 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559
            +AL+    +I   L P   T   VL+ C +   +  G+ +   +    G  ++    + 
Sbjct: 472 LQALEHFSKLIMSKLKPSTFTLSIVLSICANISTLDIGKQIHGYILRS-GNSSETSLCNG 530

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV- 618
           +I M  + G+L  +           D + W+S++ +   HG    G+   +    ++ + 
Sbjct: 531 LITMYSKCGLLGWSLRTFNVMI-ERDIVSWNSIISAYAQHGQ---GKEAVDCFKAMQDMP 586

Query: 619 ----DFAVYSQVSNFYSEIGEFEVSMQIRETAL 647
               D A ++ + +  S  G  E + QI +  L
Sbjct: 587 SIMPDQATFTTILSACSHAGLVEEACQILDIML 619


>gi|218199277|gb|EEC81704.1| hypothetical protein OsI_25308 [Oryza sativa Indica Group]
          Length = 749

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 177/561 (31%), Positives = 286/561 (50%), Gaps = 9/561 (1%)

Query: 90  HPKQALYLYDEM---VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNL 145
           HPK    L DEM   + H    +   F  +L+            Q H     LGF   NL
Sbjct: 35  HPKTTSGLNDEMRDFLRHADARTPRAFVQLLAAQPPRPSAAAADQCHAAATKLGFLASNL 94

Query: 146 YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205
           +  + L+  Y R      A  LFD++P R   TWN ++      + P   +  + +M   
Sbjct: 95  FATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMARA 154

Query: 206 GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265
           GV P   S   ++  C        G  LHS  +  G+   ++ V  ALVD Y+ C  L  
Sbjct: 155 GVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFC-ASVVVGTALVDMYAKCHHLGA 213

Query: 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325
           A++ F  +   +V ++ ++V+ +       DA+ L   M+     P++ ++   L+  + 
Sbjct: 214 AQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFAS 273

Query: 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385
             ++  GKQ+H  V K G +H    V SAL  MY KC ++E  V V  S   +     NS
Sbjct: 274 PEDIDHGKQVHCAVLKKGLEHDQF-VLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFNS 332

Query: 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445
           +++ L   G  K+A + F  M   G  +D  T ++ LKA  + +S++L   R +H   +K
Sbjct: 333 VISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKA--IGSSSSLLEGRQVHTLILK 390

Query: 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM 505
            G++S + V  SL+  Y+R G I  S+ VF  + +PN+V + S+M+G +++G G+E ++M
Sbjct: 391 IGYDSVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 450

Query: 506 LEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV-YGIDADRQHYSCMIDML 564
            E M +  + PD +TFL VL  C+H G+V +G   FN MK   Y + A  +HY+CM+D+L
Sbjct: 451 FEQMRRLHVQPDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLL 510

Query: 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624
           GRAG L++AE L+   P      ++ +LL +C++HGN  I  RV+  L+EL P D +V+ 
Sbjct: 511 GRAGYLNEAEYLINGMPIKPGASVYRALLSACQIHGNLEIVIRVSKRLIELNPHDSSVHV 570

Query: 625 QVSNFYSEIGEFEVSMQIRET 645
           Q+SN ++  G +  + +IRE 
Sbjct: 571 QLSNAFAGDGRWGNAAEIREA 591



 Score =  175 bits (444), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 194/384 (50%), Gaps = 2/384 (0%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N++++   +  + +S  L  A+ LFD+MPAR  VT+N LI G  +   P  A+  +  M 
Sbjct: 93  NLFATTALLAFYCRSRRLPEAQHLFDQMPARTAVTWNTLIHGHARSAAPGLAVAAFARMA 152

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G+  +AS+ SSVL  C        G  +H   L  GF  ++ +G+ LVD+Y +     
Sbjct: 153 RAGVSPTASSVSSVLVACVRLEDAAAGATLHSVGLMHGFCASVVVGTALVDMYAKCHHLG 212

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F E+ E+N+AT+  ++  F    RP + + +  +M+  GV PN +++  ++   +
Sbjct: 213 AAQQVFREMEEKNVATFTALVAGFVLSRRPHDAMLLVREMERSGVAPNLMTYSSLLSSFA 272

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWN 282
               +D GKQ+H  V+K G ++ + FV +ALV  YS CG L +  K    +   D +S+N
Sbjct: 273 SPEDIDHGKQVHCAVLKKG-LEHDQFVLSALVTMYSKCGILEDFVKVQMSVSCQDQVSFN 331

Query: 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL 342
           S++S  +      +A + F  M+       + +F   L     + ++  G+Q+H  + K+
Sbjct: 332 SVISGLSCLGRGKEAFQHFLEMRRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKI 391

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
           G+D   V VQ++L  MY +   I  S  VF S    +L   NSLM+     G+ K+ VEM
Sbjct: 392 GYD-SVVDVQNSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEM 450

Query: 403 FGFMVDEGIGLDEVTLSTTLKALS 426
           F  M    +  D +T  + L A S
Sbjct: 451 FEQMRRLHVQPDHITFLSVLTACS 474



 Score = 83.6 bits (205), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 59/235 (25%), Positives = 111/235 (47%), Gaps = 10/235 (4%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           + +YS    ++DFVK         +   +  +D V++N +ISG       K+A   + EM
Sbjct: 303 VTMYSKCGILEDFVK---------VQMSVSCQDQVSFNSVISGLSCLGRGKEAFQHFLEM 353

Query: 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
             HG      TF+SVL    ++    EG Q+H  +L +G+   + + + L+ +Y R G  
Sbjct: 354 RRHGTDMDVFTFASVLKAIGSSSSLLEGRQVHTLILKIGYDSVVDVQNSLISMYARHGAI 413

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
             +  +F  +   NL +WN ++    +     EV+ M+ +M+   V+P+ ++F  ++  C
Sbjct: 414 GESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQPDHITFLSVLTAC 473

Query: 222 SIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           S   L+D+G +  + +   G+ V         +VD     G L EA+   + +P+
Sbjct: 474 SHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAEYLINGMPI 528



 Score = 55.1 bits (131), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 37/144 (25%), Positives = 72/144 (50%), Gaps = 2/144 (1%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + + G +  +  +F  M A ++V++N L+SGC +  H K+ + ++++M    ++
Sbjct: 401 NSLISMYARHGAIGESNGVFISMEAPNLVSWNSLMSGCAQHGHGKEVVEMFEQMRRLHVQ 460

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVRAL 165
               TF SVL+ CS+ G   +G++    +   G+  G      + +VDL  R G    A 
Sbjct: 461 PDHITFLSVLTACSHVGLVDKGLEYFNLMKDKGYLVGARTEHYACMVDLLGRAGYLNEAE 520

Query: 166 DLFDELPERNLATWNLMLRAFCEL 189
            L + +P +  A+    L + C++
Sbjct: 521 YLINGMPIKPGASVYRALLSACQI 544


>gi|357516795|ref|XP_003628686.1| Pentatricopeptide repeat protein [Medicago truncatula]
 gi|355522708|gb|AET03162.1| Pentatricopeptide repeat protein [Medicago truncatula]
          Length = 699

 Score =  259 bits (661), Expect = 4e-66,   Method: Compositional matrix adjust.
 Identities = 190/640 (29%), Positives = 321/640 (50%), Gaps = 43/640 (6%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y+SN  I  + K   L  A +LFD+MP RD V++N +ISG            L + M 
Sbjct: 33  DLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADLDSTWQLLNAMR 92

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G      TF S L   + A     G Q+H  ++ +    N++ GS L+D+Y + G   
Sbjct: 93  VSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMRLNENVFSGSALLDMYAKCGRVD 152

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNG------LSFCY 216
            AL +F  +PE N  +WN ++  +  +   D    +    + EGV  +       L+   
Sbjct: 153 DALVVFRYMPECNYVSWNTLIAGYSRVGDLDMAFWLMRCQELEGVGIDDGTVSPLLTLLD 212

Query: 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD---FI 273
            VR  S+ M      QLH  ++K G    NI V NA++  YS C SL +A++ F     +
Sbjct: 213 GVRFYSLVM------QLHCKIVKHGLEAFNI-VCNAIITAYSECCSLQDAERVFVGAVTV 265

Query: 274 PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333
              D+++WNS+++ Y  +     A ++F  MQ     P   S+   ++  S   +   G+
Sbjct: 266 TCRDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGCSIKEHKSRGE 325

Query: 334 QIHGYVTKLGFDHGSVHVQSALTDMY----GKCNVIESSVAVFESAPGRSLECC--NSLM 387
            +HG V K G +  SV V +AL  MY     +C  +E ++ +F S   +  +CC  NS++
Sbjct: 326 SLHGLVIKRGAE-VSVPVSNALIAMYLGFDNRC--MEDALRIFFSMDVK--DCCTWNSVL 380

Query: 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447
              +  G  +DA+ +F  +    + +D+ T S  ++  S  A+  LG  + +H  ++K G
Sbjct: 381 AGYVQVGRSEDALRLFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLG--QQVHVLSLKVG 438

Query: 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLE 507
           F++N  V     DA  +C         FE   + N + + SI+ GY+++G G  AL++  
Sbjct: 439 FDTNKYVG---KDA-KKC---------FETTSNDNAIIWNSIIFGYAQHGQGNIALELFY 485

Query: 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567
           +M ++ + PD +TF+ VL  C+H+G+V+EG+ +  SM+S +GI    +HY+C +D+ GRA
Sbjct: 486 LMREKKVKPDHITFVAVLTACSHNGLVEEGRKIIQSMESDFGIPLRMEHYACAVDLYGRA 545

Query: 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627
           G L++ + L++  P   D M+  +LL +CR  GN  +   VA +L+ LEP D + Y  +S
Sbjct: 546 GYLEEGKALVETMPFEPDAMVLRTLLGACRSCGNIELASHVAKMLLVLEPEDHSTYVLLS 605

Query: 628 NFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV-NSCH 666
           + Y  +  ++    +      R + +  G S IEV N  H
Sbjct: 606 DLYGRLKMWDEKASVTRLMRERGVKKVPGWSWIEVKNKVH 645



 Score =  122 bits (307), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 114/494 (23%), Positives = 222/494 (44%), Gaps = 43/494 (8%)

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           HC  +  G   +LY  + L+  Y +      AL LFD++P+R+  +WN ++  +   +  
Sbjct: 22  HCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQRDTVSWNAVISGYVNTADL 81

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           D   ++ N M+  G   +  +F   ++G +    L+ G+QLHS +IK+  ++ N+F  +A
Sbjct: 82  DSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLHSVMIKMR-LNENVFSGSA 140

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           L+D Y+ CG + +A   F ++P  + +SWN+++   A Y  + D L++ F +  C++   
Sbjct: 141 LLDMYAKCGRVDDALVVFRYMPECNYVSWNTLI---AGYSRVGD-LDMAFWLMRCQELEG 196

Query: 313 I----RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368
           +     +    L             Q+H  + K G +  ++ V +A+   Y +C  ++ +
Sbjct: 197 VGIDDGTVSPLLTLLDGVRFYSLVMQLHCKIVKHGLEAFNI-VCNAIITAYSECCSLQDA 255

Query: 369 VAVFESAPG---RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425
             VF  A     R L   NS++ + L       A ++F  M   G   D+ + +  +   
Sbjct: 256 ERVFVGAVTVTCRDLVTWNSMLAAYLLHKKENLAFDVFIEMQSFGFEPDDYSYTGVISGC 315

Query: 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY----SRCGHIELSHQVFEKIPSP 481
           S+    + G    LH   IK G E ++ VS +L+  Y    +RC  +E + ++F  +   
Sbjct: 316 SIKEHKSRGES--LHGLVIKRGAEVSVPVSNALIAMYLGFDNRC--MEDALRIFFSMDVK 371

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           +   + S++ GY + G   +AL +   +    +  D  TF  V+  C+    ++ GQ V 
Sbjct: 372 DCCTWNSVLAGYVQVGRSEDALRLFVQVRSLFVEIDDYTFSAVIRCCSDLATLQLGQQV- 430

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
           + +    G D ++               + K  +   +T    + ++W+S++     HG 
Sbjct: 431 HVLSLKVGFDTNK--------------YVGKDAKKCFETTSNDNAIIWNSIIFGYAQHGQ 476

Query: 602 EIIGRRVANILMEL 615
                   NI +EL
Sbjct: 477 -------GNIALEL 483



 Score = 65.1 bits (157), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 59/229 (25%), Positives = 102/229 (44%), Gaps = 22/229 (9%)

Query: 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481
           L +L  ++   L   +  HC AIKSG  S++  S +L+ AYS+C  + L+ Q+F+K+P  
Sbjct: 4   LHSLIRTSHITLPYLQATHCLAIKSGSISDLYTSNNLITAYSKCAQLPLALQLFDKMPQR 63

Query: 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541
           + V + ++++GY           +L  M   G   D  TF   L G   +  ++ GQ + 
Sbjct: 64  DTVSWNAVISGYVNTADLDSTWQLLNAMRVSGHAFDNHTFGSTLKGVARAQRLELGQQLH 123

Query: 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-----------------GGG 584
           + M  +  ++ +    S ++DM  + G +D A  + +  P                 G  
Sbjct: 124 SVMIKMR-LNENVFSGSALLDMYAKCGRVDDALVVFRYMPECNYVSWNTLIAGYSRVGDL 182

Query: 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633
           D   W  L+R   + G  I    V+ +L  L+ V F  YS V   + +I
Sbjct: 183 DMAFW--LMRCQELEGVGIDDGTVSPLLTLLDGVRF--YSLVMQLHCKI 227


>gi|356521639|ref|XP_003529461.1| PREDICTED: pentatricopeptide repeat-containing protein At2g03380,
           mitochondrial-like [Glycine max]
          Length = 699

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 179/621 (28%), Positives = 303/621 (48%), Gaps = 20/621 (3%)

Query: 54  FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM--VSHGIKESAS 111
           +   G L  A+K+F+ +P RD+  + ++I        P   + LY  M    H       
Sbjct: 75  YASFGQLRHARKIFNHLPTRDLYCFKVMIRAYFLNDTPSGVVSLYRLMRLSLHPTPHDYV 134

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
            FS V   C+ +  +      HC  +      + ++ + LVD Y +      A   FDE+
Sbjct: 135 LFSIVFKSCAESRDFQTLTITHCHFVK-SLPSDSFVLTCLVDAYAKFARVDEATRAFDEI 193

Query: 172 PERN-LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
            E + + +W  M+ A+ +     E L ++N+M+   V+ N  +   +V  C+    L +G
Sbjct: 194 HENDDVVSWTSMIVAYVQNDCAREGLTLFNRMREAFVDGNEFTVGSLVSACTKLNWLHQG 253

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD----DVISWNSIVS 286
           K +H  VIK G + VN ++  +L++ Y  CG++ +A K FD         D++SW +++ 
Sbjct: 254 KWVHGFVIKNG-ICVNSYLTTSLLNMYVKCGNIQDACKVFDESSSSSYDRDLVSWTAMIV 312

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y+       ALELF   +     P+  +    L+  ++ GN   GK +HG   K G D 
Sbjct: 313 GYSQRGYPHLALELFKDKKWSGILPNSVTVSSLLSSCAQLGNSVMGKLLHGLAVKCGLDD 372

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
             V  ++AL DMY KC V+  +  VFE+   + +   NS+++  + SG   +A+ +F  M
Sbjct: 373 HPV--RNALVDMYAKCGVVSDARCVFEAMLEKDVVSWNSIISGFVQSGEAYEALNLFRRM 430

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRL---LHCCAIKSGFE-SNIAVSCSLMDAY 462
             E    D VT+   L     SA A+LG   L   +H  A+K G   S+I V  +L++ Y
Sbjct: 431 GLELFSPDAVTVVGIL-----SACASLGMLHLGCSVHGLALKDGLVVSSIYVGTALLNFY 485

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           ++CG    +  VF+ +   N V + +++ GY   G G  +L +   M++  + P++V F 
Sbjct: 486 AKCGDARAARMVFDSMGEKNAVTWGAMIGGYGMQGDGNGSLTLFRDMLEELVEPNEVVFT 545

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            +LA C+HSGMV EG  +FN M          +HY+CM+DML RAG L++A + +++ P 
Sbjct: 546 TILAACSHSGMVGEGSRLFNLMCGELNFVPSMKHYACMVDMLARAGNLEEALDFIERMPV 605

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
                ++ + L  C +H    +G      ++EL P +   Y  VSN Y+  G + +  Q+
Sbjct: 606 QPSVSVFGAFLHGCGLHSRFELGGAAIKKMLELHPDEACYYVLVSNLYASDGRWGMVKQV 665

Query: 643 RETALARKLTRDIGHSLIEVN 663
           RE    R L +  G S +E++
Sbjct: 666 REMIKQRGLNKVPGCSSVEMD 686


>gi|357143056|ref|XP_003572787.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g39350-like [Brachypodium distachyon]
          Length = 594

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 162/591 (27%), Positives = 288/591 (48%), Gaps = 13/591 (2%)

Query: 79  NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLS 138
           N L+       H ++A+ LY  M S        TF      C        G  +HCR L+
Sbjct: 11  NSLLRSYTGLGHYREAVALYSGMRSF----DHLTFPFAAKACGGLRLSRHGRAVHCRALA 66

Query: 139 LGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRM 198
            GFG + Y+ + L+ +YM  G    A  +F  +  R + +WN ++    +    +  L +
Sbjct: 67  AGFGDDTYVQNALISMYMGCGDVAAAEAVFCAMQNRTVVSWNAVIAGCVKNDCAERALEV 126

Query: 199 YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258
           + +M  +G E +  +   ++  C+    L  G+ +H  V + G  D    V NAL+D Y 
Sbjct: 127 FGEMAGDGTEIDRATVVSVLPACAQAKNLSIGRAVHQLVEERGLADYAA-VKNALIDMYG 185

Query: 259 ACGSLIEAKKSFDFIPVD-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR--S 315
            C +L  A+K FD    D DV+SW  ++  Y   D + +A  L   M +    P     +
Sbjct: 186 KCRNLEGARKVFDDHKYDKDVVSWTVMIGAYVLNDHVEEAFALGHEMLMTSGAPWPNGVT 245

Query: 316 FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
               L+  SR    +  K +H    +LG +   + V++AL D Y KC+ ++      E+ 
Sbjct: 246 MAYLLSACSRLSGRH-AKCMHAMCIRLGLE-SDIIVETALMDAYAKCHNMKMMELTLENG 303

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
             R+ E  N+ ++   H+   K A+E+   M+ E    D  T+++ L A +   SA++  
Sbjct: 304 SRRT-ETWNATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPAYA--ESADVRQ 360

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
              +HC  +  GF  +  ++  L++ Y++ G +++S  +F+ +P  +VV +T+++ GY  
Sbjct: 361 ATNIHCYLLTLGFLRSTEITTGLINVYAKAGDLDVSWSLFDGLPEKDVVAWTTVIAGYGM 420

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
           +G  + ++ +   M+Q G+ P+ VTF  +L  C+H GMV EG  +F  M+ ++G+  +  
Sbjct: 421 HGQAQTSILLYNRMVQLGVKPNTVTFASLLYACSHVGMVDEGLQLFEDMRGIHGVMPNAD 480

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615
           HYS ++DM+GRAG +++A  L++  P      +W +LL +C +H N   G   A  L EL
Sbjct: 481 HYSSLVDMVGRAGRIEEAYRLIEDMPLEPSTSVWGALLGACVLHKNVKFGEVAAKHLFEL 540

Query: 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNSCH 666
           EP +   +  + N Y+    +     +R     + L+++ G SL+E  S H
Sbjct: 541 EPKNTGNHVLLGNIYAAADRWSDVQDVRRRMAEKGLSKESGSSLVESRSVH 591



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 107/452 (23%), Positives = 212/452 (46%), Gaps = 9/452 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           + Y  N  I  ++  G + +A+ +F  M  R +V++N +I+GC K    ++AL ++ EM 
Sbjct: 72  DTYVQNALISMYMGCGDVAAAEAVFCAMQNRTVVSWNAVIAGCVKNDCAERALEVFGEMA 131

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
             G +   +T  SVL  C+ A   + G  +H  V   G      + + L+D+Y +     
Sbjct: 132 GDGTEIDRATVVSVLPACAQAKNLSIGRAVHQLVEERGLADYAAVKNALIDMYGKCRNLE 191

Query: 163 RALDLFDELP-ERNLATWNLMLRAFCELSRPDEVLRMYNK--MKAEGVEPNGLSFCYMVR 219
            A  +FD+   ++++ +W +M+ A+      +E   + ++  M +    PNG++  Y++ 
Sbjct: 192 GARKVFDDHKYDKDVVSWTVMIGAYVLNDHVEEAFALGHEMLMTSGAPWPNGVTMAYLLS 251

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI 279
            CS  +     K +H+  I+LG ++ +I V  AL+D Y+ C ++   + + +        
Sbjct: 252 ACS-RLSGRHAKCMHAMCIRLG-LESDIIVETALMDAYAKCHNMKMMELTLEN-GSRRTE 308

Query: 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV 339
           +WN+ +S Y   +    A+EL  RM     RP   +    L   + + +V     IH Y+
Sbjct: 309 TWNATISGYTHNEQEKKAIELLKRMIAESARPDSATMASILPAYAESADVRQATNIHCYL 368

Query: 340 TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
             LGF   S  + + L ++Y K   ++ S ++F+  P + +    +++      G  + +
Sbjct: 369 LTLGFLR-STEITTGLINVYAKAGDLDVSWSLFDGLPEKDVVAWTTVIAGYGMHGQAQTS 427

Query: 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459
           + ++  MV  G+  + VT ++ L A S     + G  +L        G   N     SL+
Sbjct: 428 ILLYNRMVQLGVKPNTVTFASLLYACSHVGMVDEG-LQLFEDMRGIHGVMPNADHYSSLV 486

Query: 460 DAYSRCGHIELSHQVFEKIP-SPNVVCFTSIM 490
           D   R G IE ++++ E +P  P+   + +++
Sbjct: 487 DMVGRAGRIEEAYRLIEDMPLEPSTSVWGALL 518



 Score = 74.3 bits (181), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 44/137 (32%), Positives = 75/137 (54%), Gaps = 2/137 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           I+ + K+G L+ +  LFD +P +D+V +  +I+G G     + ++ LY+ MV  G+K + 
Sbjct: 384 INVYAKAGDLDVSWSLFDGLPEKDVVAWTTVIAGYGMHGQAQTSILLYNRMVQLGVKPNT 443

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
            TF+S+L  CS+ G   EG+Q+   +  + G   N    S LVD+  R G    A  L +
Sbjct: 444 VTFASLLYACSHVGMVDEGLQLFEDMRGIHGVMPNADHYSSLVDMVGRAGRIEEAYRLIE 503

Query: 170 ELP-ERNLATWNLMLRA 185
           ++P E + + W  +L A
Sbjct: 504 DMPLEPSTSVWGALLGA 520


>gi|356504054|ref|XP_003520814.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g05240-like [Glycine max]
          Length = 563

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 137/491 (27%), Positives = 266/491 (54%), Gaps = 10/491 (2%)

Query: 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
           WN M+R F     P   + +Y +M   G  P+  +F ++++ C +    D GK +HS ++
Sbjct: 72  WNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCVIADQDCGKCIHSCIV 131

Query: 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDAL 298
           K G+ + + + A  L+  Y +C  +    K FD IP  +V++W  +++ Y   +  ++AL
Sbjct: 132 KSGF-EADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCLIAGYVKNNQPYEAL 190

Query: 299 ELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD------HGSVHVQ 352
           ++F  M      P+  + V  L   + + ++  G+ +H  + K G+D      + ++ + 
Sbjct: 191 KVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGYDPFMSTSNSNIILA 250

Query: 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412
           +A+ +MY KC  ++ +  +F   P R++   NS++ +       ++A+++F  M   G+ 
Sbjct: 251 TAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQEALDLFFDMWTSGVY 310

Query: 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472
            D+ T  + L   +   +  LG  + +H   +K+G  ++I+++ +L+D Y++ G +  + 
Sbjct: 311 PDKATFLSVLSVCAHQCALALG--QTVHAYLLKTGIATDISLATALLDMYAKTGELGNAQ 368

Query: 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDKVTFLCVLAGCNHS 531
           ++F  +   +VV +TS++NG + +G G EAL M + M +   L+PD +T++ VL  C+H 
Sbjct: 369 KIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDHITYIGVLFACSHV 428

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS 591
           G+V+E +  F  M  +YG+   R+HY CM+D+L RAG   +AE L++      +  +W +
Sbjct: 429 GLVEEAKKHFRLMTEMYGMVPGREHYGCMVDLLSRAGHFREAERLMETMTVQPNIAIWGA 488

Query: 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651
           LL  C++H N  +  +V   L ELEP    V+  +SN Y++ G +E     R+    +++
Sbjct: 489 LLNGCQIHENVCVANQVKVRLKELEPCQSGVHILLSNIYAKAGRWEEVNVTRKVMKHKRI 548

Query: 652 TRDIGHSLIEV 662
           T+ IGHS +E+
Sbjct: 549 TKTIGHSSVEM 559



 Score =  169 bits (429), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 120/498 (24%), Positives = 226/498 (45%), Gaps = 29/498 (5%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNS 62
           S + L ++  +    PT  SI+PLS   L+D +C              +D   + G +N 
Sbjct: 16  SMRELKKLHGLIVTTPTIKSIIPLSK--LID-FC--------------VDS--EFGDINY 56

Query: 63  AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122
           A  +  ++    +  +N +I G     +P+ ++ LY +M+ +G      TF  VL  C  
Sbjct: 57  ADLVLRQIHNPSVYIWNSMIRGFVNSHNPRMSMLLYRQMIENGYSPDHFTFPFVLKACCV 116

Query: 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLM 182
                 G  IH  ++  GF  + Y  + L+ +Y+        L +FD +P+ N+  W  +
Sbjct: 117 IADQDCGKCIHSCIVKSGFEADAYTATGLLHMYVSCADMKSGLKVFDNIPKWNVVAWTCL 176

Query: 183 LRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242
           +  + + ++P E L+++  M    VEPN ++    +  C+    +D G+ +H  + K G+
Sbjct: 177 IAGYVKNNQPYEALKVFEDMSHWNVEPNEITMVNALIACAHSRDIDTGRWVHQRIRKAGY 236

Query: 243 ------VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296
                  + NI +A A+++ Y+ CG L  A+  F+ +P  +++SWNS+++ Y  Y+   +
Sbjct: 237 DPFMSTSNSNIILATAILEMYAKCGRLKIARDLFNKMPQRNIVSWNSMINAYNQYERHQE 296

Query: 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356
           AL+LFF M      P   +F+  L+  +    +  G+ +H Y+ K G     + + +AL 
Sbjct: 297 ALDLFFDMWTSGVYPDKATFLSVLSVCAHQCALALGQTVHAYLLKTGIA-TDISLATALL 355

Query: 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV-DEGIGLDE 415
           DMY K   + ++  +F S   + +    S++  L   G+  +A+ MF  M  D  +  D 
Sbjct: 356 DMYAKTGELGNAQKIFSSLQKKDVVMWTSMINGLAMHGHGNEALSMFQTMQEDSSLVPDH 415

Query: 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475
           +T    L A S                 +           C ++D  SR GH   + ++ 
Sbjct: 416 ITYIGVLFACSHVGLVEEAKKHFRLMTEMYGMVPGREHYGC-MVDLLSRAGHFREAERLM 474

Query: 476 EKIP-SPNVVCFTSIMNG 492
           E +   PN+  + +++NG
Sbjct: 475 ETMTVQPNIAIWGALLNG 492


>gi|357114751|ref|XP_003559158.1| PREDICTED: pentatricopeptide repeat-containing protein
           At2g27610-like [Brachypodium distachyon]
          Length = 695

 Score =  258 bits (660), Expect = 5e-66,   Method: Compositional matrix adjust.
 Identities = 179/629 (28%), Positives = 321/629 (51%), Gaps = 26/629 (4%)

Query: 49  RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE 108
           + +D  +KSG L  A  LFD MP +++V +   +SG  +   P+ A+  + +MV+ G+  
Sbjct: 32  KRLDRLMKSGSLGDALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVAP 91

Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168
           +   F++ L+ C++A     G Q+H   +  GF  + ++GS LV+LY R G    A  +F
Sbjct: 92  NDFAFNAALAACADASALRAGEQVHSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKGVF 151

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D +   ++  +  ++ AFC     +  +   ++M  +GVEPN  +   ++  C   +L  
Sbjct: 152 DRMESPDVVGYTSLVSAFCRSGEFELAVDTLHQMLRQGVEPNEHTMASILGSCCPFVL-- 209

Query: 229 EGKQLHSHVIK-LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSI 287
            G+Q+H+++IK +G    +++ ++AL+DFYS       AK  F+ +   +V++W S++ +
Sbjct: 210 -GEQVHAYMIKAMGLHSQSMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQL 268

Query: 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA-----SRTGNVYFGKQIHGYVTKL 342
           +       DAL++F  M            VE   FA        G++  G+Q+H    K 
Sbjct: 269 HIRDGRPEDALQVFDDM-------ISEGVVEPNEFAFSIALGACGSIALGRQLHSSAIKR 321

Query: 343 GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402
                 + V +AL  MYG+   ++   AV +      +    + +++   +G  + A+ +
Sbjct: 322 NLT-SDLRVSNALLSMYGRICHVQELEAVLKDIENPDIVSWTTAISANFQNGFSEKAIAL 380

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462
              +   G+  ++   S+ L   S +  A L   R  HC A+K G +  I    +L++ Y
Sbjct: 381 LSMLHSRGLMPNDYAFSSALS--SCADLALLDQGRQFHCLALKLGCDLKICTGNALINLY 438

Query: 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDML-EVMIQRGLIPDKVTF 521
           S+CG I  +   F+ +   +V  + S+++GY+++G    AL +  E+   RG  PD+ +F
Sbjct: 439 SKCGQIAPAKLAFDVMDHRDVTSWNSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSF 498

Query: 522 LCVLAGCNHSGMVKEGQLVFNSM--KSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
           L VLA CNH+GMV EG  +F ++   S +G      HY+C++DM+GR+G  D A  L+++
Sbjct: 499 LGVLAACNHAGMVNEGVALFRAIASHSQHGATPSPSHYACVVDMMGRSGRFDDALRLVEE 558

Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL----EPVDFAVYSQVSNFYSEIGE 635
            P     ++W +LL SCR+HGN   G   A  LMEL    E  D A Y  +S  ++  GE
Sbjct: 559 MPFRPGALIWKTLLASCRLHGNLETGELAAERLMELSEGGEDRDSASYVLMSGIHAMRGE 618

Query: 636 FEVSMQIRETALARKLTRDIGHSLIEVNS 664
           +  + ++R       + ++ G S +EV++
Sbjct: 619 WRDAYRVRRRMDEAGVRKEAGCSWVEVHN 647



 Score =  125 bits (314), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 87/341 (25%), Positives = 164/341 (48%), Gaps = 10/341 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           ++Y+S+  ID + ++   + AK +F+ +  +++VT+  ++    +   P+ AL ++D+M+
Sbjct: 227 SMYASSALIDFYSRNSEFDMAKAVFNNLHCKNVVTWCSMMQLHIRDGRPEDALQVFDDMI 286

Query: 103 SHGIKESAS-TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161
           S G+ E     FS  L  C   G    G Q+H   +      +L + + L+ +Y R+   
Sbjct: 287 SEGVVEPNEFAFSIALGAC---GSIALGRQLHSSAIKRNLTSDLRVSNALLSMYGRICHV 343

Query: 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221
                +  ++   ++ +W   + A  +    ++ + + + + + G+ PN  +F   +  C
Sbjct: 344 QELEAVLKDIENPDIVSWTTAISANFQNGFSEKAIALLSMLHSRGLMPNDYAFSSALSSC 403

Query: 222 SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISW 281
           +   LLD+G+Q H   +KLG  D+ I   NAL++ YS CG +  AK +FD +   DV SW
Sbjct: 404 ADLALLDQGRQFHCLALKLG-CDLKICTGNALINLYSKCGQIAPAKLAFDVMDHRDVTSW 462

Query: 282 NSIVSIYADYDLIFDALELFFRMQLCR-KRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340
           NS++  YA +     AL++F  M+  R   P   SF+  L   +  G V  G  +   + 
Sbjct: 463 NSLIHGYAQHGDASMALQVFGEMRSIRGTEPDESSFLGVLAACNHAGMVNEGVALFRAIA 522

Query: 341 KLGFDHGSVHVQS---ALTDMYGKCNVIESSVAVFESAPGR 378
                HG+    S    + DM G+    + ++ + E  P R
Sbjct: 523 SHS-QHGATPSPSHYACVVDMMGRSGRFDDALRLVEEMPFR 562



 Score = 62.0 bits (149), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/155 (32%), Positives = 75/155 (48%), Gaps = 10/155 (6%)

Query: 42  LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEM 101
           L I + N  I+ + K G +  AK  FD M  RD+ ++N LI G  +      AL ++ EM
Sbjct: 426 LKICTGNALINLYSKCGQIAPAKLAFDVMDHRDVTSWNSLIHGYAQHGDASMALQVFGEM 485

Query: 102 VS-HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP-----LVDLY 155
            S  G +   S+F  VL+ C++AG   EG+ +   + S     +    SP     +VD+ 
Sbjct: 486 RSIRGTEPDESSFLGVLAACNHAGMVNEGVALFRAIAS--HSQHGATPSPSHYACVVDMM 543

Query: 156 MRMGPSVRALDLFDELPERNLA-TWNLMLRAFCEL 189
            R G    AL L +E+P R  A  W  +L A C L
Sbjct: 544 GRSGRFDDALRLVEEMPFRPGALIWKTLL-ASCRL 577



 Score = 44.7 bits (104), Expect = 0.16,   Method: Compositional matrix adjust.
 Identities = 37/145 (25%), Positives = 73/145 (50%), Gaps = 7/145 (4%)

Query: 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515
           C  +D   + G +  +  +F+++P  N+V +TS ++G +RNG    A+     M+  G+ 
Sbjct: 31  CKRLDRLMKSGSLGDALDLFDRMPRKNIVAWTSAVSGLTRNGRPEAAMAAFADMVASGVA 90

Query: 516 PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEE 575
           P+   F   LA C  +  ++ G+ V +S+    G   D    S ++++  R G L  A+ 
Sbjct: 91  PNDFAFNAALAACADASALRAGEQV-HSLAVRAGFAGDSWVGSSLVELYSRCGDLGAAKG 149

Query: 576 LLQ--QTPGGGDCMMWSSLLRS-CR 597
           +    ++P   D + ++SL+ + CR
Sbjct: 150 VFDRMESP---DVVGYTSLVSAFCR 171


>gi|255556729|ref|XP_002519398.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
 gi|223541465|gb|EEF43015.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis]
          Length = 615

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 150/474 (31%), Positives = 253/474 (53%), Gaps = 13/474 (2%)

Query: 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253
            +  +Y +M   G+ P+  +  Y+++ CS      E  Q+H+H IK G +  N+FV N L
Sbjct: 121 HIFSLYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTG-LSSNLFVKNTL 179

Query: 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI 313
           + FY+  G +   +K FD  P  D+ISW +++  Y+      +A+  FFRM     R ++
Sbjct: 180 MRFYAVSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTADRMTL 239

Query: 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD-HGSVHVQSALTDMYGKCNVIESSVAVF 372
              V  L+  S+ G+   GK+I  Y+    FD H  V + +AL DMY KC     +  +F
Sbjct: 240 ---VVVLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLF 296

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
              P ++L   NS+++ L H G  K+A+ MF  M   G+  D VTL   L     ++ AN
Sbjct: 297 HLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVL-----NSCAN 351

Query: 433 LGSCRL---LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSI 489
           LG   L   +H    K+  +++  V+ +L+D Y++CG I+ +  VF+ +   +V  +T++
Sbjct: 352 LGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAM 411

Query: 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG 549
           + G++ +G    AL +   M + G+ PD VT + VL+ C+H+G+++EG+  F  M  +Y 
Sbjct: 412 IVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYH 471

Query: 550 IDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVA 609
           +    +HY CM+D+LGRAG++ +AE    + P   D  +W SLL +C++H    +G  V 
Sbjct: 472 LQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVWGSLLGACKIHAKVELGETVI 531

Query: 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
             L+E+EP     Y  +SN YS    +  +++ R+      + +  G S IEV+
Sbjct: 532 QKLIEMEPERDGAYILMSNIYSSANRWRDALKWRKAMKQNNIKKTPGCSSIEVD 585



 Score =  147 bits (370), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 163/333 (48%), Gaps = 9/333 (2%)

Query: 97  LYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156
           LY +M+  G+     T   +L  CS +  + E +QIH   +  G   NL++ + L+  Y 
Sbjct: 125 LYRQMLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYA 184

Query: 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY 216
             G       +FD+ P  +L +W  +++A+ ++  P E +  + +M       + ++   
Sbjct: 185 VSGFIEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRMNCTA---DRMTLVV 241

Query: 217 MVRGCSIGMLLDEGKQLHSHV-IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV 275
           ++  CS       GK++ +++   L  V  ++F+ NAL+D Y  CG    A++ F  +PV
Sbjct: 242 VLSACSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPV 301

Query: 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335
            +++SWNS++S  A   L  +AL +F RMQ    +P   + V  LN  +  G++  GK +
Sbjct: 302 KNLVSWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWV 361

Query: 336 HGYVTKLGFDHGSV--HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393
           H Y+ K   +H     +V +AL DMY KC  I+ +  VF++   + +    +++      
Sbjct: 362 HSYIDK---NHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMH 418

Query: 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           G    A+ +F  M   G+  D VTL   L A S
Sbjct: 419 GKADRALAIFSEMPRMGVRPDHVTLVGVLSACS 451



 Score =  130 bits (326), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/379 (25%), Positives = 178/379 (46%), Gaps = 7/379 (1%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML   L P   T+  L   C+       +L + ++  +     N++  N  +  +  SG 
Sbjct: 129 MLLIGLSPDTYTLPYLLKACSQSHAFIEALQIHAHSIKTGLSSNLFVKNTLMRFYAVSGF 188

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           + + +K+FD+ P  D++++  LI    K  +P +A+  +  M          T   VLS 
Sbjct: 189 IEAVEKVFDQGPHWDLISWTTLIQAYSKMGYPSEAIAAFFRM---NCTADRMTLVVVLSA 245

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGL--NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177
           CS  G +T G +I   +    F +  ++++G+ L+D+Y++ G    A  LF  +P +NL 
Sbjct: 246 CSQLGDFTLGKKILAYMDHHLFDVHSDVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLV 305

Query: 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237
           +WN M+          E L M+ +M+  G++P+ ++   ++  C+    L+ GK +HS++
Sbjct: 306 SWNSMISGLAHQGLFKEALHMFRRMQTMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYI 365

Query: 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDA 297
            K   +  + +VANALVD Y+ CGS+ +A   F  +   DV S+ +++  +A +     A
Sbjct: 366 DK-NHMKADGYVANALVDMYAKCGSIDQAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRA 424

Query: 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357
           L +F  M     RP   + V  L+  S  G +  G++    +++L            + D
Sbjct: 425 LAIFSEMPRMGVRPDHVTLVGVLSACSHAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVD 484

Query: 358 MYGKCNVIESSVAVFESAP 376
           + G+  +I  + A     P
Sbjct: 485 LLGRAGLISEAEAFTNKMP 503



 Score =  100 bits (250), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 65/267 (24%), Positives = 133/267 (49%), Gaps = 4/267 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           +++  N  +D ++K G  + A++LF  MP +++V++N +ISG       K+AL+++  M 
Sbjct: 272 DVFLGNALLDMYLKCGQPHLARQLFHLMPVKNLVSWNSMISGLAHQGLFKEALHMFRRMQ 331

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           + G+K  + T   VL+ C+N G    G  +H  +       + Y+ + LVD+Y + G   
Sbjct: 332 TMGLKPDSVTLVGVLNSCANLGDLELGKWVHSYIDKNHMKADGYVANALVDMYAKCGSID 391

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
           +A  +F  +  +++ ++  M+  F    + D  L ++++M   GV P+ ++   ++  CS
Sbjct: 392 QAFMVFQAMKCKDVYSYTAMIVGFAMHGKADRALAIFSEMPRMGVRPDHVTLVGVLSACS 451

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISW 281
              LL+EG++    + +L  +         +VD     G + EA+   + +P V D   W
Sbjct: 452 HAGLLEEGRRHFQDMSRLYHLQPQTEHYGCMVDLLGRAGLISEAEAFTNKMPIVPDASVW 511

Query: 282 NSIV---SIYADYDLIFDALELFFRMQ 305
            S++    I+A  +L    ++    M+
Sbjct: 512 GSLLGACKIHAKVELGETVIQKLIEME 538


>gi|449447363|ref|XP_004141438.1| PREDICTED: pentatricopeptide repeat-containing protein At4g33170-like
            [Cucumis sativus]
          Length = 1573

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 175/618 (28%), Positives = 310/618 (50%), Gaps = 28/618 (4%)

Query: 63   AKKLFDEMPARDMVTYNLLISGCGKFRHPKQ---ALYLYDEMVSHGIKESASTFSSVLSV 119
            A K+F      ++  +N  ++   +F H  Q   A+  +  ++   I   + T   +LS 
Sbjct: 847  AMKMFPFDQGSNIFAWNKKLT---EFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSA 903

Query: 120  CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
               A     G QIH  V+   F   + + + L+++Y + G    A   F   PE +L +W
Sbjct: 904  AVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISW 963

Query: 180  NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK------QL 233
            N M+ ++ + +   E +  +  +  +G++P+  +   ++R CS G   DEG+      Q+
Sbjct: 964  NTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQV 1020

Query: 234  HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK----KSFDFIPVDDVISWNSIVSIYA 289
            H + IK G ++ + FV+ AL+D YS  G + EA+      +DF    D+ SWN+I+  Y 
Sbjct: 1021 HVYAIKCGIIN-DSFVSTALIDLYSKGGKMDEAEFLLHGKYDF----DLASWNAIMFGYI 1075

Query: 290  DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
              +    ALE F  M          +    +  +    N+  GKQI  Y  KLGF++  +
Sbjct: 1076 KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNN-DL 1134

Query: 350  HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
             V S + DMY KC  + +++ +F            ++++  + +G+   A+ ++  M   
Sbjct: 1135 WVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVS 1194

Query: 410  GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            G+  DE T +T +KA S   +   G  + +H   +K  +  +  V  SL+D Y +CG ++
Sbjct: 1195 GVQPDEYTFATLIKASSCLTALEQG--KQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQ 1252

Query: 470  LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
             +++VF K+    VV + +++ G +++G   EAL++   M   G+ PDKVTF+ VL+ C+
Sbjct: 1253 DAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACS 1312

Query: 530  HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            HSG+  E    F++M   YGI  + +HYSC++D LGRAG + +AE ++   P      M+
Sbjct: 1313 HSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMY 1372

Query: 590  SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
             +LL +CR  G+    +RVA+ L+ L+P D + Y  +SN Y+   +++     R     +
Sbjct: 1373 RALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLK 1432

Query: 650  KLTRDIGHSLIEV-NSCH 666
             + +D G S I+V N  H
Sbjct: 1433 NVKKDPGFSWIDVKNKVH 1450



 Score =  172 bits (436), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 146/570 (25%), Positives = 272/570 (47%), Gaps = 46/570 (8%)

Query: 41   QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            +L+++ S   ++ + K G +  A+ LFD+MP RD V +N+++                  
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKA---------------- 792

Query: 101  MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
             V +  ++ A  F    S    +GF+ +   +HC +     G+N    S + +   R   
Sbjct: 793  YVENSFQDEALRF---FSAFHRSGFFPDFSNLHCVI----GGVN----SDVSNNRKRHAE 841

Query: 161  SVR--ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
             V+  A+ +F      N+  WN  L  F    +    +  +  +    +  + ++   ++
Sbjct: 842  QVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 219  RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
                    LD G+Q+H+ VIK  +  V + V+N+L++ YS  G +  A+K+F   P  D+
Sbjct: 902  SAAVGADDLDLGEQIHALVIKSSFAPV-VPVSNSLMNMYSKAGVVYAAEKTFINSPELDL 960

Query: 279  ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN--VYF--GKQ 334
            ISWN+++S YA  +L  +A+  F  +     +P   +    L  A  TG+   YF  G Q
Sbjct: 961  ISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR-ACSTGDEGEYFTLGSQ 1019

Query: 335  IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
            +H Y  K G  + S  V +AL D+Y K   ++ +  +        L   N++M   + S 
Sbjct: 1020 VHVYAIKCGIINDSF-VSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 395  NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
              + A+E F  M + GI +DE+TL+T +KA       NL   + +   AIK GF +++ V
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKA--SGCLINLKQGKQIQAYAIKLGFNNDLWV 1136

Query: 455  SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
            S  ++D Y +CG +  + ++F +I  P+ V +T++++GY  NG    AL +  +M   G+
Sbjct: 1137 SSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 515  IPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHY--SCMIDMLGRAGILD 571
             PD+ TF  ++   +    +++G Q+  N +K  Y +D    H+  + ++DM  + G + 
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD----HFVGTSLVDMYCKCGSVQ 1252

Query: 572  KAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
             A  + ++       + W+++L     HG+
Sbjct: 1253 DAYRVFRKMD-VRKVVFWNAMLLGLAQHGH 1281



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 226/471 (47%), Gaps = 34/471 (7%)

Query: 14   TTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR 73
            ++ AP    +VP+S+SL+           N+YS         K+G + +A+K F   P  
Sbjct: 923  SSFAP----VVPVSNSLM-----------NMYS---------KAGVVYAAEKTFINSPEL 958

Query: 74   DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG---FYTEGI 130
            D++++N +IS   +     +A+  + +++  G+K    T +SVL  CS      ++T G 
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGS 1018

Query: 131  QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            Q+H   +  G   + ++ + L+DLY + G    A  L     + +LA+WN ++  + + +
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 191  RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            +  + L  ++ M   G+  + ++    ++     + L +GKQ+ ++ IKLG+ + +++V+
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGF-NNDLWVS 1137

Query: 251  NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            + ++D Y  CG +  A + F  I   D ++W +++S Y +      AL ++  M++   +
Sbjct: 1138 SGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQ 1197

Query: 311  PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF--DHGSVHVQSALTDMYGKCNVIESS 368
            P   +F   +  +S    +  GKQIH  V KL +  DH    V ++L DMY KC  ++ +
Sbjct: 1198 PDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDH---FVGTSLVDMYCKCGSVQDA 1254

Query: 369  VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
              VF     R +   N+++  L   G++ +A+ +F  M   GI  D+VT    L A S S
Sbjct: 1255 YRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHS 1314

Query: 429  ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
               +  + +         G    I     L+DA  R G I+ +  V   +P
Sbjct: 1315 GLFS-EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364



 Score =  142 bits (357), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 210/464 (45%), Gaps = 50/464 (10%)

Query: 129  GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
            G + H R+++ G   + Y+ + L+ +Y + G    A  +FD+  +R+L TWN +L A+ +
Sbjct: 630  GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 189  LSRPD-----EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
             +        E  R++  ++  G     L+   +++ C +   +   + +H + +K+G+ 
Sbjct: 690  FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF- 748

Query: 244  DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
            ++++FV+ ALV+ Y   G + +A+  FD +P  D + WN ++  Y +     +AL  F  
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 304  MQLCRKRPSIRSF---VEFLNFASRTGNVYFGKQIHGYVTKL-GFDHGSVHVQSALTDMY 359
                   P   +    +  +N           +Q+  Y  K+  FD GS           
Sbjct: 809  FHRSGFFPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGS----------- 857

Query: 360  GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
                               ++   N  +T  LH+G I  A++ F  ++   IG D VTL 
Sbjct: 858  -------------------NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 420  TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
              L A   +   +LG    +H   IKS F   + VS SLM+ YS+ G +  + + F   P
Sbjct: 899  IILSAAVGADDLDLG--EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP 956

Query: 480  SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ- 538
              +++ + ++++ Y++N +  EA+     +++ GL PD+ T   VL  C+      EG+ 
Sbjct: 957  ELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEGEY 1013

Query: 539  LVFNSMKSVY----GIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
                S   VY    GI  D    + +ID+  + G +D+AE LL 
Sbjct: 1014 FTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 177/375 (47%), Gaps = 14/375 (3%)

Query: 45   YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
            + S   ID + K G ++ A+ L       D+ ++N ++ G  K    ++AL  +  M   
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 105  GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            GI     T ++ +          +G QI    + LGF  +L++ S ++D+Y++ G    A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 165  LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            L+LF E+   +   W  M+  + E    D  L +Y+ M+  GV+P+  +F  +++  S  
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 225  MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              L++GKQ+H++V+KL +  ++ FV  +LVD Y  CGS+ +A + F  + V  V+ WN++
Sbjct: 1214 TALEQGKQIHANVVKLDY-SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAM 1272

Query: 285  VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG-----NVYFGKQIHGYV 339
            +   A +  + +AL LF  MQ    +P   +F+  L+  S +G       YF      Y 
Sbjct: 1273 LLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYG 1332

Query: 340  TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
                 +H      S L D  G+   I+ +  V  S P    +   S+  +LL +   K  
Sbjct: 1333 ITPEIEH-----YSCLVDALGRAGRIQEAENVIASMP---FKASASMYRALLGACRTKGD 1384

Query: 400  VEMFGFMVDEGIGLD 414
             E    + D+ + LD
Sbjct: 1385 AETAKRVADKLLALD 1399



 Score = 76.6 bits (187), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 8/208 (3%)

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
            ++  GK+ H  +   G D    ++ + L  MY KC  + S+  VF+ +  R L   NS+
Sbjct: 625 ADLKLGKRAHARIVTSG-DLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 387 MTSLLHSG-----NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
           + +          N+ +   +FG + + G  +  +TL+  LK   +S    +     +H 
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET--VHG 741

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
            A+K GFE ++ VS +L++ Y + G +  +  +F+K+P  + V +  ++  Y  N    E
Sbjct: 742 YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDE 801

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           AL       + G  PD     CV+ G N
Sbjct: 802 ALRFFSAFHRSGFFPDFSNLHCVIGGVN 829


>gi|302784186|ref|XP_002973865.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
 gi|300158197|gb|EFJ24820.1| hypothetical protein SELMODRAFT_100621 [Selaginella moellendorffii]
          Length = 616

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 152/545 (27%), Positives = 291/545 (53%), Gaps = 14/545 (2%)

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
           SH  ++ A  + ++L  C   G    G +IH  V+  G+  N+Y+G+ LV +Y + G   
Sbjct: 63  SHQQEDCAPAYGNLLRDC---GELAAGKKIHEHVVKNGYYENVYVGNHLVQMYSKCGSLE 119

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +FD +  R+  +W+ M+  +       E +++Y   KA  ++P+G +F  ++  CS
Sbjct: 120 DAKKVFDGMRRRDSISWSKMIAGYVRHGLAREAIKLY---KAMAIDPDGFTFSAVLNACS 176

Query: 223 -IG-MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS 280
            +G   L+ GK++H+H+ ++ W+  ++FV +ALV  ++ CGSL E+++ FD     DV+ 
Sbjct: 177 SLGPRALEVGKEIHAHMKRI-WLKPDVFVDSALVTMFAKCGSLKESREVFDDCRWKDVLF 235

Query: 281 WNSIVSIYADYDLIFDALELFFRMQLCRK--RPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           WNS++  Y+      +A+ELF  M        P+  ++   L   S   ++  GK++H  
Sbjct: 236 WNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQ 295

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           +   GF   +   +++L +MY KC  I  +  VF+    R++     ++++ +  G+ ++
Sbjct: 296 MVDAGFQFDAA-AENSLVNMYAKCGSITEAREVFDGMKQRTVVSWTGIISAYVRKGHPRE 354

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458
           A++++  M  EG+  + +T ++ L A S   +   G  + +H     +G++ ++AV+ +L
Sbjct: 355 ALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEG--KAVHAQMKAAGYKPDLAVANAL 412

Query: 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518
           +  Y +CG ++ + +VF+++   NVV +T++++ Y+ +    EA+ + + M   G+    
Sbjct: 413 VSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEEAIQLYKAMDLEGVQASS 472

Query: 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
             +  VL  C+ +G+++  +  F  +    G  A  + Y CM  +LGRAG L +AEELL 
Sbjct: 473 FIYGTVLTACSQAGLLESARHYFGCLTRDCGAPAKLEDYVCMATVLGRAGRLAEAEELLA 532

Query: 579 QTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638
             P   + + W  LL +C+ H +   G RVA +L  LEP++ A Y  +SN Y   G  E 
Sbjct: 533 VMPFEAEFVAWMGLLAACKAHNDVERGARVAEVLFRLEPLNEAPYVLLSNIYVAAGRQEE 592

Query: 639 SMQIR 643
           + ++R
Sbjct: 593 AARVR 597



 Score =  179 bits (454), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 202/388 (52%), Gaps = 9/388 (2%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+Y  N  +  + K G L  AKK+FD M  RD ++++ +I+G  +    ++A+ LY  M 
Sbjct: 101 NVYVGNHLVQMYSKCGSLEDAKKVFDGMRRRDSISWSKMIAGYVRHGLAREAIKLYKAMA 160

Query: 103 SHGIKESASTFSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
              I     TFS+VL+ CS+ G      G +IH  +  +    ++++ S LV ++ + G 
Sbjct: 161 ---IDPDGFTFSAVLNACSSLGPRALEVGKEIHAHMKRIWLKPDVFVDSALVTMFAKCGS 217

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG--VEPNGLSFCYMV 218
              + ++FD+   +++  WN M+ A+ +   P E + ++  M +    VEPN +++  ++
Sbjct: 218 LKESREVFDDCRWKDVLFWNSMIVAYSQSGHPREAIELFKSMGSSSPPVEPNAITYTTVL 277

Query: 219 RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
             CS    L++GK++H  ++  G+   +    N+LV+ Y+ CGS+ EA++ FD +    V
Sbjct: 278 AACSAVEDLEQGKEVHRQMVDAGF-QFDAAAENSLVNMYAKCGSITEAREVFDGMKQRTV 336

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +SW  I+S Y       +AL+L+ +M      P+  +F   L+  S  G +  GK +H  
Sbjct: 337 VSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACSSLGALEEGKAVHAQ 396

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           +   G+    + V +AL  +YGKC  ++S+  VF+    R++    +++++  H  + ++
Sbjct: 397 MKAAGYKP-DLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTAMISAYAHHRHSEE 455

Query: 399 AVEMFGFMVDEGIGLDEVTLSTTLKALS 426
           A++++  M  EG+        T L A S
Sbjct: 456 AIQLYKAMDLEGVQASSFIYGTVLTACS 483



 Score =  125 bits (314), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 76/316 (24%), Positives = 151/316 (47%), Gaps = 5/316 (1%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLD-SYCQPNPQLNIYSSNRTIDDFVKSGHLN 61
           S  + P   T TT+   C+++  L     +         Q +  + N  ++ + K G + 
Sbjct: 263 SPPVEPNAITYTTVLAACSAVEDLEQGKEVHRQMVDAGFQFDAAAENSLVNMYAKCGSIT 322

Query: 62  SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
            A+++FD M  R +V++  +IS   +  HP++AL LY +M S G++ +  TF+SVLS CS
Sbjct: 323 EAREVFDGMKQRTVVSWTGIISAYVRKGHPREALDLYRKMGSEGVEPNGITFASVLSACS 382

Query: 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181
           + G   EG  +H ++ + G+  +L + + LV LY + G    A  +FD +  RN+ +W  
Sbjct: 383 SLGALEEGKAVHAQMKAAGYKPDLAVANALVSLYGKCGSVDSARKVFDRMKIRNVVSWTA 442

Query: 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241
           M+ A+      +E +++Y  M  EGV+ +   +  ++  CS   LL+  +     + +  
Sbjct: 443 MISAYAHHRHSEEAIQLYKAMDLEGVQASSFIYGTVLTACSQAGLLESARHYFGCLTRDC 502

Query: 242 WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS---IYADYDLIFDA 297
                +     +       G L EA++    +P + + ++W  +++    + D +     
Sbjct: 503 GAPAKLEDYVCMATVLGRAGRLAEAEELLAVMPFEAEFVAWMGLLAACKAHNDVERGARV 562

Query: 298 LELFFRMQLCRKRPSI 313
            E+ FR++   + P +
Sbjct: 563 AEVLFRLEPLNEAPYV 578


>gi|449486805|ref|XP_004157408.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At4g33170-like [Cucumis sativus]
          Length = 1573

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 175/618 (28%), Positives = 310/618 (50%), Gaps = 28/618 (4%)

Query: 63   AKKLFDEMPARDMVTYNLLISGCGKFRHPKQ---ALYLYDEMVSHGIKESASTFSSVLSV 119
            A K+F      ++  +N  ++   +F H  Q   A+  +  ++   I   + T   +LS 
Sbjct: 847  AMKMFPFDQGSNIFAWNKKLT---EFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIILSA 903

Query: 120  CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
               A     G QIH  V+   F   + + + L+++Y + G    A   F   PE +L +W
Sbjct: 904  AVGADDLDLGEQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSPELDLISW 963

Query: 180  NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK------QL 233
            N M+ ++ + +   E +  +  +  +G++P+  +   ++R CS G   DEG+      Q+
Sbjct: 964  NTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEGEYFTLGSQV 1020

Query: 234  HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK----KSFDFIPVDDVISWNSIVSIYA 289
            H + IK G ++ + FV+ AL+D YS  G + EA+      +DF    D+ SWN+I+  Y 
Sbjct: 1021 HVYAIKCGIIN-DSFVSTALIDLYSKGGKMDEAEFLLHGKYDF----DLASWNAIMFGYI 1075

Query: 290  DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV 349
              +    ALE F  M          +    +  +    N+  GKQI  Y  KLGF++  +
Sbjct: 1076 KSNKSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNN-DL 1134

Query: 350  HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
             V S + DMY KC  + +++ +F            ++++  + +G+   A+ ++  M   
Sbjct: 1135 WVSSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVS 1194

Query: 410  GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
            G+  DE T +T +KA S   +   G  + +H   +K  +  +  V  SL+D Y +CG ++
Sbjct: 1195 GVQPDEYTFATLIKASSCLTALEQG--KQIHANVVKLDYSLDHFVGTSLVDMYCKCGSVQ 1252

Query: 470  LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
             +++VF K+    VV + +++ G +++G   EAL++   M   G+ PDKVTF+ VL+ C+
Sbjct: 1253 DAYRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACS 1312

Query: 530  HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMW 589
            HSG+  E    F++M   YGI  + +HYSC++D LGRAG + +AE ++   P      M+
Sbjct: 1313 HSGLFSEAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMPFKASASMY 1372

Query: 590  SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649
             +LL +CR  G+    +RVA+ L+ L+P D + Y  +SN Y+   +++     R     +
Sbjct: 1373 RALLGACRTKGDAETAKRVADKLLALDPSDSSAYVLLSNIYAASRQWDDVTDARNMMKLK 1432

Query: 650  KLTRDIGHSLIEV-NSCH 666
             + +D G S I+V N  H
Sbjct: 1433 NVKKDPGFSWIDVKNKVH 1450



 Score =  171 bits (432), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 146/570 (25%), Positives = 271/570 (47%), Gaps = 46/570 (8%)

Query: 41   QLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDE 100
            +L+++ S   ++ + K G +  A+ LFD+MP RD V +N+++                  
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKA---------------- 792

Query: 101  MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
             V +  ++ A  F    S    +GF  +   +HC +     G+N    S + +   R   
Sbjct: 793  YVENSFQDEALRF---FSAFHRSGFXPDFSNLHCVI----GGVN----SDVSNNRKRHAE 841

Query: 161  SVR--ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMV 218
             V+  A+ +F      N+  WN  L  F    +    +  +  +    +  + ++   ++
Sbjct: 842  QVKAYAMKMFPFDQGSNIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLVIIL 901

Query: 219  RGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
                    LD G+Q+H+ VIK  +  V + V+N+L++ YS  G +  A+K+F   P  D+
Sbjct: 902  SAAVGADDLDLGEQIHALVIKSSFAPV-VPVSNSLMNMYSKAGVVYAAEKTFINSPELDL 960

Query: 279  ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN--VYF--GKQ 334
            ISWN+++S YA  +L  +A+  F  +     +P   +    L  A  TG+   YF  G Q
Sbjct: 961  ISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLR-ACSTGDEGEYFTLGSQ 1019

Query: 335  IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG 394
            +H Y  K G  + S  V +AL D+Y K   ++ +  +        L   N++M   + S 
Sbjct: 1020 VHVYAIKCGIINDSF-VSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 395  NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV 454
              + A+E F  M + GI +DE+TL+T +KA       NL   + +   AIK GF +++ V
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKA--SGCLINLKQGKQIQAYAIKLGFNNDLWV 1136

Query: 455  SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514
            S  ++D Y +CG +  + ++F +I  P+ V +T++++GY  NG    AL +  +M   G+
Sbjct: 1137 SSGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGV 1196

Query: 515  IPDKVTFLCVLAGCNHSGMVKEG-QLVFNSMKSVYGIDADRQHY--SCMIDMLGRAGILD 571
             PD+ TF  ++   +    +++G Q+  N +K  Y +D    H+  + ++DM  + G + 
Sbjct: 1197 QPDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLD----HFVGTSLVDMYCKCGSVQ 1252

Query: 572  KAEELLQQTPGGGDCMMWSSLLRSCRVHGN 601
             A  + ++       + W+++L     HG+
Sbjct: 1253 DAYRVFRKMD-VRKVVFWNAMLLGLAQHGH 1281



 Score =  159 bits (401), Expect = 6e-36,   Method: Compositional matrix adjust.
 Identities = 119/471 (25%), Positives = 226/471 (47%), Gaps = 34/471 (7%)

Query: 14   TTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPAR 73
            ++ AP    +VP+S+SL+           N+YS         K+G + +A+K F   P  
Sbjct: 923  SSFAP----VVPVSNSLM-----------NMYS---------KAGVVYAAEKTFINSPEL 958

Query: 74   DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG---FYTEGI 130
            D++++N +IS   +     +A+  + +++  G+K    T +SVL  CS      ++T G 
Sbjct: 959  DLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTGDEGEYFTLGS 1018

Query: 131  QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELS 190
            Q+H   +  G   + ++ + L+DLY + G    A  L     + +LA+WN ++  + + +
Sbjct: 1019 QVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSN 1078

Query: 191  RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVA 250
            +  + L  ++ M   G+  + ++    ++     + L +GKQ+ ++ IKLG+ + +++V+
Sbjct: 1079 KSRKALEHFSLMHEMGIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGF-NNDLWVS 1137

Query: 251  NALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310
            + ++D Y  CG +  A + F  I   D ++W +++S Y +      AL ++  M++   +
Sbjct: 1138 SGVLDMYIKCGDMPNALELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQ 1197

Query: 311  PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF--DHGSVHVQSALTDMYGKCNVIESS 368
            P   +F   +  +S    +  GKQIH  V KL +  DH    V ++L DMY KC  ++ +
Sbjct: 1198 PDEYTFATLIKASSCLTALEQGKQIHANVVKLDYSLDH---FVGTSLVDMYCKCGSVQDA 1254

Query: 369  VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428
              VF     R +   N+++  L   G++ +A+ +F  M   GI  D+VT    L A S S
Sbjct: 1255 YRVFRKMDVRKVVFWNAMLLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHS 1314

Query: 429  ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
               +  + +         G    I     L+DA  R G I+ +  V   +P
Sbjct: 1315 GLFS-EAYKYFDAMFKTYGITPEIEHYSCLVDALGRAGRIQEAENVIASMP 1364



 Score =  142 bits (359), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 114/464 (24%), Positives = 210/464 (45%), Gaps = 50/464 (10%)

Query: 129  GIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188
            G + H R+++ G   + Y+ + L+ +Y + G    A  +FD+  +R+L TWN +L A+ +
Sbjct: 630  GKRAHARIVTSGDLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSILAAYAQ 689

Query: 189  LSRPD-----EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243
             +        E  R++  ++  G     L+   +++ C +   +   + +H + +K+G+ 
Sbjct: 690  FADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSETVHGYAVKIGF- 748

Query: 244  DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR 303
            ++++FV+ ALV+ Y   G + +A+  FD +P  D + WN ++  Y +     +AL  F  
Sbjct: 749  ELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDEALRFFSA 808

Query: 304  MQLCRKRPSIRSF---VEFLNFASRTGNVYFGKQIHGYVTKL-GFDHGSVHVQSALTDMY 359
                   P   +    +  +N           +Q+  Y  K+  FD GS           
Sbjct: 809  FHRSGFXPDFSNLHCVIGGVNSDVSNNRKRHAEQVKAYAMKMFPFDQGS----------- 857

Query: 360  GKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLS 419
                               ++   N  +T  LH+G I  A++ F  ++   IG D VTL 
Sbjct: 858  -------------------NIFAWNKKLTEFLHAGQIVAAIDCFKTLLRSTIGHDSVTLV 898

Query: 420  TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
              L A   +   +LG    +H   IKS F   + VS SLM+ YS+ G +  + + F   P
Sbjct: 899  IILSAAVGADDLDLG--EQIHALVIKSSFAPVVPVSNSLMNMYSKAGVVYAAEKTFINSP 956

Query: 480  SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ- 538
              +++ + ++++ Y++N +  EA+     +++ GL PD+ T   VL  C+      EG+ 
Sbjct: 957  ELDLISWNTMISSYAQNNLEMEAICTFRDLLRDGLKPDQFTLASVLRACSTG---DEGEY 1013

Query: 539  LVFNSMKSVY----GIDADRQHYSCMIDMLGRAGILDKAEELLQ 578
                S   VY    GI  D    + +ID+  + G +D+AE LL 
Sbjct: 1014 FTLGSQVHVYAIKCGIINDSFVSTALIDLYSKGGKMDEAEFLLH 1057



 Score =  140 bits (354), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/375 (26%), Positives = 177/375 (47%), Gaps = 14/375 (3%)

Query: 45   YSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH 104
            + S   ID + K G ++ A+ L       D+ ++N ++ G  K    ++AL  +  M   
Sbjct: 1034 FVSTALIDLYSKGGKMDEAEFLLHGKYDFDLASWNAIMFGYIKSNKSRKALEHFSLMHEM 1093

Query: 105  GIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRA 164
            GI     T ++ +          +G QI    + LGF  +L++ S ++D+Y++ G    A
Sbjct: 1094 GIPIDEITLATAIKASGCLINLKQGKQIQAYAIKLGFNNDLWVSSGVLDMYIKCGDMPNA 1153

Query: 165  LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
            L+LF E+   +   W  M+  + E    D  L +Y+ M+  GV+P+  +F  +++  S  
Sbjct: 1154 LELFGEISRPDEVAWTTMISGYIENGDEDHALSVYHLMRVSGVQPDEYTFATLIKASSCL 1213

Query: 225  MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284
              L++GKQ+H++V+KL +  ++ FV  +LVD Y  CGS+ +A + F  + V  V+ WN++
Sbjct: 1214 TALEQGKQIHANVVKLDY-SLDHFVGTSLVDMYCKCGSVQDAYRVFRKMDVRKVVFWNAM 1272

Query: 285  VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTG-----NVYFGKQIHGYV 339
            +   A +  + +AL LF  MQ    +P   +F+  L+  S +G       YF      Y 
Sbjct: 1273 LLGLAQHGHVDEALNLFRTMQSNGIQPDKVTFIGVLSACSHSGLFSEAYKYFDAMFKTYG 1332

Query: 340  TKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399
                 +H      S L D  G+   I+ +  V  S P    +   S+  +LL +   K  
Sbjct: 1333 ITPEIEH-----YSCLVDALGRAGRIQEAENVIASMP---FKASASMYRALLGACRTKGD 1384

Query: 400  VEMFGFMVDEGIGLD 414
             E    + D+ + LD
Sbjct: 1385 AETAKRVADKLLALD 1399



 Score = 75.9 bits (185), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 53/208 (25%), Positives = 96/208 (46%), Gaps = 8/208 (3%)

Query: 327 GNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSL 386
            ++  GK+ H  +   G D    ++ + L  MY KC  + S+  VF+ +  R L   NS+
Sbjct: 625 ADLKLGKRAHARIVTSG-DLPDRYLTNNLITMYSKCGSLCSARQVFDKSSDRDLVTWNSI 683

Query: 387 MTSLLHSG-----NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
           + +          N+ +   +FG + + G  +  +TL+  LK   +S    +     +H 
Sbjct: 684 LAAYAQFADSSYENVLEGFRLFGLLREFGFSITRLTLAPLLKLCLLSGFVQVSET--VHG 741

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
            A+K GFE ++ VS +L++ Y + G +  +  +F+K+P  + V +  ++  Y  N    E
Sbjct: 742 YAVKIGFELDLFVSGALVNIYCKYGLVGQARLLFDKMPERDAVLWNVMLKAYVENSFQDE 801

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCN 529
           AL       + G  PD     CV+ G N
Sbjct: 802 ALRFFSAFHRSGFXPDFSNLHCVIGGVN 829


>gi|225444329|ref|XP_002264248.1| PREDICTED: pentatricopeptide repeat-containing protein At1g11290
           [Vitis vinifera]
          Length = 767

 Score =  258 bits (660), Expect = 6e-66,   Method: Compositional matrix adjust.
 Identities = 168/622 (27%), Positives = 322/622 (51%), Gaps = 36/622 (5%)

Query: 73  RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132
           +D   +N LI+     ++P+ AL  +  M +H +  +  TF ++L  C+        +Q+
Sbjct: 16  KDTFHWNSLIAK-NATQNPQTALTFFTRMQAHAVPSNNFTFPALLKACAALRRLLPTLQV 74

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER--NLATWNLMLRAFCELS 190
           H  +  LG   + +  + LVD Y + G +  A  +FDE+PE   ++ +W  ++ A+    
Sbjct: 75  HAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEMPEGSVDVVSWTALISAYSSNG 134

Query: 191 RPDEVLRMYNKMKA----EGVEPNGL---SFCYMVRGCSIGM---LLDEGKQLHSHVIKL 240
             DE  + + +M+     +G E  G+   S   +V  C++G     L  G  +H  V+K 
Sbjct: 135 CVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACAVGCGSNCLRRGSAVHGLVVKY 194

Query: 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD--DVISWNSIVSIYADYDLIFDAL 298
           G+  V+  + N++V  YSAC  +  A + F+ IP++  DV+SWNS++S +        AL
Sbjct: 195 GF-GVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDVVSWNSLISGFTLNGEAERAL 253

Query: 299 ELFFRM---QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS------V 349
             F  M         P+  + +  L   +  G V     +H Y++     H S      V
Sbjct: 254 RTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISS---RHSSLLVAKDV 310

Query: 350 HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409
            V +AL DM+ +C  +  +  +F+   G+++ C ++++         ++A+ +F  M+ E
Sbjct: 311 VVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLME 370

Query: 410 G--IGLDEVTLSTTLKALSVSASANLGSCR---LLHCCAIKSGFESNIAVSCSLMDAYSR 464
           G  +G++    + TL ++ ++A + LG+ R   ++H  A+ +G + +  ++ +L+D  ++
Sbjct: 371 GNMVGVEVKPNAVTLVSV-IAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAK 429

Query: 465 CGHIELSHQVFEKI--PSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522
           CG IE   QVF ++   +  VV ++S++     +G G+ AL++   M   G  P+++T++
Sbjct: 430 CGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYI 489

Query: 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG 582
            VL+ C+H+G+V++G+  FNSM+  YG+    +HY+C++D+LGRAG LD+A  ++   P 
Sbjct: 490 SVLSACSHAGLVEQGKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPI 549

Query: 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642
             D  +W SLL +C +HGN  +G  V   ++ L+      +  ++N Y + G ++  +++
Sbjct: 550 KADLALWGSLLAACHLHGNCKLGEIVEKKILSLDSNSVGHHVLLANMYEDAGRWDDVVRM 609

Query: 643 RETALARKLTRDIGHSLIEVNS 664
           R       L +  G S IE+ +
Sbjct: 610 RVELRRSGLRKIPGQSFIEIGN 631



 Score =  135 bits (339), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 121/498 (24%), Positives = 222/498 (44%), Gaps = 33/498 (6%)

Query: 12  TITTLAPTCTSIVPLSSSLLLDSY-CQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70
           T   L   C ++  L  +L + +Y  +     + +S+   +D + K GH   A ++FDEM
Sbjct: 54  TFPALLKACAALRRLLPTLQVHAYLTRLGLAADRFSAAALVDAYGKCGHAYYAAQVFDEM 113

Query: 71  P--ARDMVTYNLLIS-----GC--GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121
           P  + D+V++  LIS     GC    F+   +  ++     S        +  +++S C+
Sbjct: 114 PEGSVDVVSWTALISAYSSNGCVDEAFKAFGRMRWMRGWDGSECCGVDVVSLGALVSACA 173

Query: 122 ---NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELP--ERNL 176
               +     G  +H  V+  GFG++ ++G+ +V +Y        A  +F+ +P  +R++
Sbjct: 174 VGCGSNCLRRGSAVHGLVVKYGFGVSTHLGNSMVHMYSACKDVGGAWRVFNGIPIEQRDV 233

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEG---VEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            +WN ++  F      +  LR +  M +EG   VEPN ++   +++ C+    ++    +
Sbjct: 234 VSWNSLISGFTLNGEAERALRTFEDMVSEGTSAVEPNRVTVIALLKSCAELGCVETSSWV 293

Query: 234 HSHVIKLG---WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           H ++        V  ++ V  AL+D ++ CG+L  A++ FD +   +V+ W+++++ Y  
Sbjct: 294 HEYISSRHSSLLVAKDVVVLTALLDMHARCGNLALAREIFDGVEGKNVVCWSAMIAGYEQ 353

Query: 291 YDLIFDALELFFRMQL------CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344
                +AL LF +M +         +P+  + V  +   SR G       IH Y    G 
Sbjct: 354 GSCPEEALRLFRQMLMEGNMVGVEVKPNAVTLVSVIAACSRLGASRSASMIHKYAVATGL 413

Query: 345 DHGSVHVQSALTDMYGKCNVIESSVAVFES--APGRSLECCNSLMTSLLHSGNIKDAVEM 402
           D     + SAL DM  KC  IE    VF       R++   +S++ +    G  K A+E+
Sbjct: 414 DQ-DARIASALIDMCAKCGDIEHGRQVFSEMDESTRTVVSWSSMIGAEGIHGEGKRALEL 472

Query: 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLG-SCRLLHCCAIKSGFESNIAVSCSLMDA 461
           F  M   G   +E+T  + L A S +     G SC   +      G          L+D 
Sbjct: 473 FSEMRTGGYEPNEITYISVLSACSHAGLVEQGKSC--FNSMEKDYGMSPTGKHYACLVDL 530

Query: 462 YSRCGHIELSHQVFEKIP 479
             R GH++ +H V   +P
Sbjct: 531 LGRAGHLDEAHNVILNMP 548



 Score = 89.4 bits (220), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 67/298 (22%), Positives = 137/298 (45%), Gaps = 14/298 (4%)

Query: 3   STKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTI-----DDFVKS 57
           ++ + P   T+  L  +C  +  + +S  +  Y        + + +  +     D   + 
Sbjct: 264 TSAVEPNRVTVIALLKSCAELGCVETSSWVHEYISSRHSSLLVAKDVVVLTALLDMHARC 323

Query: 58  GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG------IKESAS 111
           G+L  A+++FD +  +++V ++ +I+G  +   P++AL L+ +M+  G      +K +A 
Sbjct: 324 GNLALAREIFDGVEGKNVVCWSAMIAGYEQGSCPEEALRLFRQMLMEGNMVGVEVKPNAV 383

Query: 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDEL 171
           T  SV++ CS  G       IH   ++ G   +  I S L+D+  + G       +F E+
Sbjct: 384 TLVSVIAACSRLGASRSASMIHKYAVATGLDQDARIASALIDMCAKCGDIEHGRQVFSEM 443

Query: 172 PE--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            E  R + +W+ M+ A          L ++++M+  G EPN +++  ++  CS   L+++
Sbjct: 444 DESTRTVVSWSSMIGAEGIHGEGKRALELFSEMRTGGYEPNEITYISVLSACSHAGLVEQ 503

Query: 230 GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-DVISWNSIVS 286
           GK   + + K   +         LVD     G L EA      +P+  D+  W S+++
Sbjct: 504 GKSCFNSMEKDYGMSPTGKHYACLVDLLGRAGHLDEAHNVILNMPIKADLALWGSLLA 561


>gi|297740136|emb|CBI30318.3| unnamed protein product [Vitis vinifera]
          Length = 861

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 174/665 (26%), Positives = 335/665 (50%), Gaps = 68/665 (10%)

Query: 31  LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90
           +L++    N  +  YS  R +DD         A  LFD M  RD V++++++ G  K   
Sbjct: 109 MLENIVVANKLIYFYSYYRALDD---------AYGLFDGMCVRDSVSWSVMVGGFAKVGD 159

Query: 91  PKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150
                  + E++  G +    T   V+  C +     + +Q+                  
Sbjct: 160 YINCFGTFRELIRCGARPDNYTLPFVIRACRD----LKNLQM-----------------A 198

Query: 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210
           LVD+Y++      A  LFD++ ER+L TW +M+  + E  + +E L ++ KM+ EGV P+
Sbjct: 199 LVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGYAECGKANESLVLFEKMREEGVVPD 258

Query: 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSF 270
            ++   +V  C+    + + + +  ++ +  +  +++ +  A++D Y+ CG +  A++ F
Sbjct: 259 KVAMVTVVFACAKLGAMHKARIIDDYIQRKKF-QLDVILGTAMIDMYAKCGCVESAREIF 317

Query: 271 DFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA------- 323
           D +   +VISW+++++ Y  +     AL+LF RM L       +  +  L +A       
Sbjct: 318 DRMEEKNVISWSAMIAAYGYHGQGRKALDLF-RMMLSSGMLPDKITLASLLYACINCRNL 376

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQS---ALTDMYG----KC--NVIESSVAVFES 374
           ++   V+    +HG +  L   +  VH  S   AL D YG     C  + +  SV V   
Sbjct: 377 TQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRALDDAYGLFDGMCVRDSVSWSVMVGGF 436

Query: 375 AP-GRSLECCNSLMT-----------SLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422
           A  G  + C  +              +L   GN  +++ +F  M +EG+  D+V + T  
Sbjct: 437 AKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNANESLVLFDKMREEGVVPDKVAMVTV- 495

Query: 423 KALSVSASANLGS---CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
               V A A LG+    R +     +  F+ ++ +  +++D +++CG +E + ++F+++ 
Sbjct: 496 ----VFACAKLGAMHKARTIDDYIQRKKFQLDVILGTAMIDMHAKCGCVESAREIFDRME 551

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             NV+ +++++  Y  +G GR+ALD+  +M++ G++P+K+T + +L  C+H+G+V+EG  
Sbjct: 552 EKNVISWSAMIAAYGYHGQGRKALDLFPMMLRSGILPNKITLVSLLYACSHAGLVEEGLR 611

Query: 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599
            F+ M   Y + AD +HY+C++D+LGRAG LD+A +L++      D  +W + L +CR H
Sbjct: 612 FFSLMWEDYSVRADVKHYTCVVDLLGRAGRLDEALKLIESMTVEKDEGLWGAFLGACRTH 671

Query: 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659
            + ++  + A  L+EL+P +   Y  +SN Y+  G +E   + R+    R+L +  G + 
Sbjct: 672 KDVVLAEKAATSLLELQPQNPGHYILLSNIYANAGRWEDVAKTRDLMSQRRLKKIPGWTW 731

Query: 660 IEVNS 664
           IEV++
Sbjct: 732 IEVDN 736



 Score =  118 bits (296), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 111/532 (20%), Positives = 234/532 (43%), Gaps = 69/532 (12%)

Query: 113 FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALD----LF 168
           + S L  C N    T+  Q+H +    G   N+ + + L+  Y       RALD    LF
Sbjct: 84  YISALVNCRN---LTQVRQVHAQASVHGMLENIVVANKLIYFY----SYYRALDDAYGLF 136

Query: 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLD 228
           D +  R+  +W++M+  F ++         + ++   G  P+  +  +++R C       
Sbjct: 137 DGMCVRDSVSWSVMVGGFAKVGDYINCFGTFRELIRCGARPDNYTLPFVIRACR------ 190

Query: 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           + K L                  ALVD Y  C  + +A+  FD +   D+++W  ++  Y
Sbjct: 191 DLKNLQM----------------ALVDMYVKCREIEDARFLFDKMQERDLVTWTVMIGGY 234

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGS 348
           A+     ++L LF +M+     P   + V  +   ++ G ++  + I  Y+ +  F    
Sbjct: 235 AECGKANESLVLFEKMREEGVVPDKVAMVTVVFACAKLGAMHKARIIDDYIQRKKF-QLD 293

Query: 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408
           V + +A+ DMY KC  +ES+  +F+    +++   ++++ +  + G  + A+++F  M+ 
Sbjct: 294 VILGTAMIDMYAKCGCVESAREIFDRMEEKNVISWSAMIAAYGYHGQGRKALDLFRMMLS 353

Query: 409 EGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHI 468
            G+  D++TL++ L A       NL   R +H  A   G   N+ V+  L+  YS    +
Sbjct: 354 SGMLPDKITLASLLYA--CINCRNLTQVRQVHAQASVHGMLQNLIVANKLVHFYSYYRAL 411

Query: 469 ELSHQVFEKIPSPNVVCFTSIMNGYSRN----------------------------GMGR 500
           + ++ +F+ +   + V ++ ++ G+++                             G   
Sbjct: 412 DDAYGLFDGMCVRDSVSWSVMVGGFAKVGDYMNCFGTFRELIRCGARPDNYTLPFCGNAN 471

Query: 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560
           E+L + + M + G++PDKV  + V+  C   G + + + + + ++       D    + M
Sbjct: 472 ESLVLFDKMREEGVVPDKVAMVTVVFACAKLGAMHKARTIDDYIQR-KKFQLDVILGTAM 530

Query: 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANIL 612
           IDM  + G ++ A E+  +     + + WS+++ +   HG    GR+  ++ 
Sbjct: 531 IDMHAKCGCVESAREIFDRME-EKNVISWSAMIAAYGYHGQ---GRKALDLF 578


>gi|302759917|ref|XP_002963381.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
 gi|300168649|gb|EFJ35252.1| hypothetical protein SELMODRAFT_80412 [Selaginella moellendorffii]
          Length = 860

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 167/588 (28%), Positives = 293/588 (49%), Gaps = 24/588 (4%)

Query: 55  VKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114
            + G L   +++FD MP R +VT+  +I+   +  +  +AL LY  M    I+      S
Sbjct: 281 ARCGSLVGTREMFDRMPHRTVVTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALS 337

Query: 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER 174
           +VL  CS      +G  +H R+ S  F  +L + + LVD+Y++ G    A   FD    R
Sbjct: 338 NVLQACSRLKNLEQGRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKAR 397

Query: 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
           ++ +W  ++ A+   +   E L +++ M+ EGVEPN ++FC ++  CS    L  G+ LH
Sbjct: 398 DVISWTSLITAYSHENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALH 457

Query: 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLI 294
           S V+  G +  + FV NALV  YS  G +  A+  FD IPV    SW  ++         
Sbjct: 458 SRVVATGHIS-DEFVGNALVSMYSKFGRVDFARMVFDSIPVKRYPSWRVMLVALTQNGHS 516

Query: 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSA 354
            +ALE++ R+ L   RP    F   L   +   +V   + IHG +    F +  + + + 
Sbjct: 517 HEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRARAIHGVIKSSDF-YPDLVLSNV 575

Query: 355 LTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLD 414
           L ++Y KC  +E +  VF+    ++     +++     +G   +A+E++  M        
Sbjct: 576 LMNVYAKCGELEKARLVFDQMTEKNEVSWTTMIGGYAQNGRPAEALELYKAM-------- 627

Query: 415 EVTLSTTLKALSVSASANLGSC---RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471
           +V  +       +S+ A+LG+    + +H     +G ++N  +  +L++ Y++CG + L+
Sbjct: 628 DVQPNFIAFVPVISSCADLGALVEGQRVHARLSDAGLQNNEVIVTALVNMYAKCGKLGLA 687

Query: 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531
            + F+    P+   + S+   Y++ G G + L++   M  +G+ P+ +T L VL  C+H 
Sbjct: 688 REFFDSTYCPDAGAWNSMATAYAQFGHGSQVLELYREMCLQGVQPNGITLLSVLVACSHM 747

Query: 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG--GGDCM-- 587
           GM++E +  F  M + +GI    +HYSCM D+LGR+G L++AE++++   G  G +    
Sbjct: 748 GMLEECEHRFECMVADHGIAPTSEHYSCMTDLLGRSGRLEEAEKVVKMASGESGSEAASP 807

Query: 588 ----MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631
                W S L +C+ H +       A  L EL+P D A Y  +S  YS
Sbjct: 808 VAVSAWMSFLGACKTHNDWGRAAGAAEKLYELDPEDSAPYVLLSQTYS 855



 Score =  182 bits (461), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 125/506 (24%), Positives = 243/506 (48%), Gaps = 15/506 (2%)

Query: 81  LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140
           +IS   +  + ++AL LY+EM   G+  +  TF+ VLS C+       G ++H R+    
Sbjct: 1   MISAYAQKGYHREALELYEEMDERGVDPNDKTFACVLSACAGLKDMERGKKVHRRIRESV 60

Query: 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200
             ++  + + L++LY + G    +  +F+ +  R +ATWN M+ A+ +     E L  + 
Sbjct: 61  ARVDTVLQNALLNLYAKCGDLEESRRIFEAMERRTVATWNTMITAYVQHDFFQEALEAFR 120

Query: 201 KMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG-WVDVNIFVANALVDFYSA 259
           +M A    P+ ++F  ++  C     L+ GK +H  +      +  +  + N+LV  Y  
Sbjct: 121 RMDA---PPSSITFTSVLGACCSPDDLETGKAIHRQIGGSSPQIQADEILQNSLVTMYGK 177

Query: 260 CGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFR-MQLCRKRPSIRSFVE 318
           CGSL +A++ F  I   +  SW ++++ YA       A+E+F   M   R  P   ++  
Sbjct: 178 CGSLEDAERVFHGIRRKNAFSWTAMITAYAQNGYERRAIEVFGDMMSEGRVEPDPITYAG 237

Query: 319 FLNFASRTGNVYFGKQIHGYVTK---LGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA 375
            L   S  G++  G +IH  + +   LG ++  V +Q  +  ++ +C  +  +  +F+  
Sbjct: 238 VLTACSTLGDLETGMRIHALIHRIYTLGLEYDDV-LQDGILSLHARCGSLVGTREMFDRM 296

Query: 376 PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435
           P R++    +++ +    G   +A+E++  M    I  D++ LS  L+A   S   NL  
Sbjct: 297 PHRTVVTWTTMIAAYNQRGYSMEALELYHCM---DIEPDDIALSNVLQA--CSRLKNLEQ 351

Query: 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR 495
            R +H       FE ++ V   L+D Y +CG +  + + F+   + +V+ +TS++  YS 
Sbjct: 352 GRAVHSRIASRDFEPSLMVQTLLVDMYVKCGDLAEARRTFDGFKARDVISWTSLITAYSH 411

Query: 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ 555
              GREAL++   M   G+ P+ +TF  V+  C+    +  G+ + + + +  G  +D  
Sbjct: 412 ENFGREALEVFHSMELEGVEPNSITFCTVIDACSRLSSLLPGRALHSRVVAT-GHISDEF 470

Query: 556 HYSCMIDMLGRAGILDKAEELLQQTP 581
             + ++ M  + G +D A  +    P
Sbjct: 471 VGNALVSMYSKFGRVDFARMVFDSIP 496



 Score =  159 bits (402), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 108/427 (25%), Positives = 204/427 (47%), Gaps = 8/427 (1%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110
           +D +VK G L  A++ FD   ARD++++  LI+        ++AL ++  M   G++ ++
Sbjct: 375 VDMYVKCGDLAEARRTFDGFKARDVISWTSLITAYSHENFGREALEVFHSMELEGVEPNS 434

Query: 111 STFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDE 170
            TF +V+  CS       G  +H RV++ G   + ++G+ LV +Y + G    A  +FD 
Sbjct: 435 ITFCTVIDACSRLSSLLPGRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARMVFDS 494

Query: 171 LPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230
           +P +   +W +ML A  +     E L MY+++  EG  P    F   +  C+    +   
Sbjct: 495 IPVKRYPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDVSRA 554

Query: 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYAD 290
           + +H  VIK      ++ ++N L++ Y+ CG L +A+  FD +   + +SW +++  YA 
Sbjct: 555 RAIHG-VIKSSDFYPDLVLSNVLMNVYAKCGELEKARLVFDQMTEKNEVSWTTMIGGYAQ 613

Query: 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH 350
                +ALEL+  M +   +P+  +FV  ++  +  G +  G+++H  ++  G  +  V 
Sbjct: 614 NGRPAEALELYKAMDV---QPNFIAFVPVISSCADLGALVEGQRVHARLSDAGLQNNEVI 670

Query: 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410
           V +AL +MY KC  +  +   F+S         NS+ T+    G+    +E++  M  +G
Sbjct: 671 V-TALVNMYAKCGKLGLAREFFDSTYCPDAGAWNSMATAYAQFGHGSQVLELYREMCLQG 729

Query: 411 IGLDEVTLSTTLKALSVSASANLGSCR-LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469
           +  + +TL + L  ++ S    L  C     C     G          + D   R G +E
Sbjct: 730 VQPNGITLLSVL--VACSHMGMLEECEHRFECMVADHGIAPTSEHYSCMTDLLGRSGRLE 787

Query: 470 LSHQVFE 476
            + +V +
Sbjct: 788 EAEKVVK 794



 Score =  126 bits (316), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/377 (25%), Positives = 177/377 (46%), Gaps = 13/377 (3%)

Query: 8   PRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL-NIYSSNRTIDDFVKSGHLNSAKKL 66
           P   T  T+   C+ +  L     L S       + + +  N  +  + K G ++ A+ +
Sbjct: 432 PNSITFCTVIDACSRLSSLLPGRALHSRVVATGHISDEFVGNALVSMYSKFGRVDFARMV 491

Query: 67  FDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126
           FD +P +   ++ +++    +  H  +AL +Y  +   G +  +  FS+ L  C+     
Sbjct: 492 FDSIPVKRYPSWRVMLVALTQNGHSHEALEMYSRIHLEGFRPGSPIFSAALVSCTALEDV 551

Query: 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAF 186
           +    IH  + S  F  +L + + L+++Y + G   +A  +FD++ E+N  +W  M+  +
Sbjct: 552 SRARAIHGVIKSSDFYPDLVLSNVLMNVYAKCGELEKARLVFDQMTEKNEVSWTTMIGGY 611

Query: 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246
            +  RP E L +Y   KA  V+PN ++F  ++  C+    L EG+++H+ +   G +  N
Sbjct: 612 AQNGRPAEALELY---KAMDVQPNFIAFVPVISSCADLGALVEGQRVHARLSDAG-LQNN 667

Query: 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306
             +  ALV+ Y+ CG L  A++ FD     D  +WNS+ + YA +      LEL+  M L
Sbjct: 668 EVIVTALVNMYAKCGKLGLAREFFDSTYCPDAGAWNSMATAYAQFGHGSQVLELYREMCL 727

Query: 307 CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG----SVHVQSALTDMYGKC 362
              +P+  + +  L   S  G +   ++       +  DHG    S H  S +TD+ G+ 
Sbjct: 728 QGVQPNGITLLSVLVACSHMGML---EECEHRFECMVADHGIAPTSEHY-SCMTDLLGRS 783

Query: 363 NVIESSVAVFESAPGRS 379
             +E +  V + A G S
Sbjct: 784 GRLEEAEKVVKMASGES 800


>gi|225460143|ref|XP_002275945.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g71490-like [Vitis vinifera]
          Length = 748

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 163/580 (28%), Positives = 289/580 (49%), Gaps = 48/580 (8%)

Query: 114 SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE 173
           SS+LS C++     EG Q+H  ++SLGF  +  +   LV  Y      V A  + +    
Sbjct: 104 SSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSNI 163

Query: 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233
            +   WNL++ ++       + L  Y +M  +G+ P+  ++  +++ C   + L  GK++
Sbjct: 164 LHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKEV 223

Query: 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDL 293
           H   I    +  ++ V NAL+  Y  CG +  A+  FD IP  D +SWNS++S+YA   +
Sbjct: 224 HES-INASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGM 282

Query: 294 IFDALELF-----------------------------------FRMQLCRKRPSIRSFVE 318
             +A ELF                                    +M+ C       + + 
Sbjct: 283 WNEAFELFGSMWAEDIELNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALII 342

Query: 319 FLNFASRTGNVYFGKQIHGYVTKLGFDHGSVH-VQSALTDMYGKCNVIESSVAVFESAPG 377
            L   S  G+   GK+IH +  +  F  G V  V++AL  MY +C  ++ +  +F+    
Sbjct: 343 GLGACSHIGDAKLGKEIHSFAIRSCF--GEVDTVKNALITMYSRCKDLKHAYLLFQLMEA 400

Query: 378 RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR 437
           +SL   NS+++   H    ++A  +   M+  GI  + VT+++ L     +  ANL   +
Sbjct: 401 KSLITWNSIISGCCHMDRSEEASFLLREMLLFGIEPNYVTIASVLPL--CARVANLQHGK 458

Query: 438 LLHCCAIK-SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN 496
             HC   +   F+ ++ +  +L+D Y+R G +  + +VF+ +   + + +TS++ GY   
Sbjct: 459 EFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQ 518

Query: 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQH 556
           G G+ AL + E M    + PD +T + VL+ C+HSG+V +GQL+F  M+S+YG+    +H
Sbjct: 519 GEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEH 578

Query: 557 YSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616
           ++CM D+ GRAG+L+KA+E+++  P      MW++L+ +CR+H N  IG   A  L+E++
Sbjct: 579 FACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLIGACRIHRNTEIGEWAAEKLLEMK 638

Query: 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656
           P +   Y  ++N Y+  G +       + A  R   RD+G
Sbjct: 639 PENPGYYVLIANMYAAAGCW------NKLAKVRIFMRDLG 672



 Score =  104 bits (259), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/364 (23%), Positives = 159/364 (43%), Gaps = 35/364 (9%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI- 106
           N  I  + K G +  A+ LFD++P RD V++N +IS         +A  L+  M +  I 
Sbjct: 240 NALISMYGKCGKVGIARDLFDKIPERDAVSWNSMISVYASMGMWNEAFELFGSMWAEDIE 299

Query: 107 -----------------------------KESASTFSSV-----LSVCSNAGFYTEGIQI 132
                                        ++  S   SV     L  CS+ G    G +I
Sbjct: 300 LNIIIWNTIAGGYLRTGNYKGALELLSQMRKCGSHLDSVALIIGLGACSHIGDAKLGKEI 359

Query: 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
           H   +   FG    + + L+ +Y R      A  LF  +  ++L TWN ++   C + R 
Sbjct: 360 HSFAIRSCFGEVDTVKNALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRS 419

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           +E   +  +M   G+EPN ++   ++  C+    L  GK+ H ++ +      ++ + NA
Sbjct: 420 EEASFLLREMLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNA 479

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           LVD Y+  G ++EA++ FD +   D +++ S+++ Y        AL+LF  M   + +P 
Sbjct: 480 LVDMYARSGKVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPD 539

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             + +  L+  S +G V  G+ +   +  L      +   + +TD++G+  ++  +  + 
Sbjct: 540 HITMIAVLSACSHSGLVTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEII 599

Query: 373 ESAP 376
            + P
Sbjct: 600 RNMP 603



 Score = 88.6 bits (218), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 60/240 (25%), Positives = 115/240 (47%), Gaps = 2/240 (0%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  + +   L  A  LF  M A+ ++T+N +ISGC      ++A +L  EM+  GI+
Sbjct: 376 NALITMYSRCKDLKHAYLLFQLMEAKSLITWNSIISGCCHMDRSEEASFLLREMLLFGIE 435

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGLNLYIGSPLVDLYMRMGPSVRALD 166
            +  T +SVL +C+       G + HC +     F  +L + + LVD+Y R G  + A  
Sbjct: 436 PNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSGKVLEARR 495

Query: 167 LFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226
           +FD L ER+  T+  M+  +         L+++ +M    ++P+ ++   ++  CS   L
Sbjct: 496 VFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLSACSHSGL 555

Query: 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WNSIV 285
           + +G+ L   +  L  +  ++     + D +   G L +AK+    +P     + W +++
Sbjct: 556 VTQGQLLFEKMRSLYGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPTPAMWATLI 615



 Score = 73.2 bits (178), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 55/200 (27%), Positives = 98/200 (49%), Gaps = 7/200 (3%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQL--NIYSSNRTIDDFVKSG 58
           ML   + P   TI ++ P C  +  L        Y         ++   N  +D + +SG
Sbjct: 429 MLLFGIEPNYVTIASVLPLCARVANLQHGKEFHCYMTRREDFKDHLLLWNALVDMYARSG 488

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLS 118
            +  A+++FD +  RD +TY  +I+G G     + AL L++EM +  IK    T  +VLS
Sbjct: 489 KVLEARRVFDMLGERDKMTYTSMIAGYGMQGEGQAALKLFEEMNNFQIKPDHITMIAVLS 548

Query: 119 VCSNAGFYTEGIQIHCRVLSLGFGLNLYIG--SPLVDLYMRMGPSVRALDLFDELPER-N 175
            CS++G  T+G  +  ++ SL +GL  ++   + + DL+ R G   +A ++   +P +  
Sbjct: 549 ACSHSGLVTQGQLLFEKMRSL-YGLTPHLEHFACMTDLFGRAGLLNKAKEIIRNMPYKPT 607

Query: 176 LATWNLMLRAFCELSRPDEV 195
            A W  ++ A C + R  E+
Sbjct: 608 PAMWATLIGA-CRIHRNTEI 626



 Score = 62.8 bits (151), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 56/239 (23%), Positives = 103/239 (43%), Gaps = 14/239 (5%)

Query: 362 CNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421
           CN +ES+   F S     ++   + +      GN+ DA +    +        +  +   
Sbjct: 43  CNALESAQETFTSVDASMIDSLLTSLKEFTSRGNLLDAFKTVSLIRLHASSASQDLIVHP 102

Query: 422 LKAL--SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479
           + +L  S +   +L   R LH   I  GFE +  +   L+  YS    +  +H + E   
Sbjct: 103 ISSLLSSCTDVKSLAEGRQLHGHIISLGFEQHPILVPKLVTFYSAFNLLVDAHVITENSN 162

Query: 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539
             +   +  +++ Y RNG  ++AL   + M+++G+ PD  T+  VL  C     +  G+ 
Sbjct: 163 ILHPFPWNLLISSYVRNGFCQKALSAYKQMVKKGIRPDNFTYPSVLKACGEELDLGFGKE 222

Query: 540 VFNSMKSVYGIDADRQHYS-----CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
           V  S      I+A R  +S      +I M G+ G +  A +L  + P   D + W+S++
Sbjct: 223 VHES------INASRIKWSLIVHNALISMYGKCGKVGIARDLFDKIP-ERDAVSWNSMI 274


>gi|449497589|ref|XP_004160443.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g02750-like [Cucumis sativus]
          Length = 776

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 170/621 (27%), Positives = 312/621 (50%), Gaps = 63/621 (10%)

Query: 48  NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107
           N  I  ++ +   + A+K+F++MP RD++++N+++SG  K  +   A  L+++M    + 
Sbjct: 95  NAMISGYLSNNKFDCARKVFEKMPDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDV- 153

Query: 108 ESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167
               +++++LS  +  GF  E  +I  ++L      N    + L+  Y++ G    A  L
Sbjct: 154 ---VSWNAMLSGFAQNGFVEEARKIFDQMLVK----NEISWNGLLSAYVQNGRIEDARRL 206

Query: 168 FDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLL 227
           FD   +  + +WN ++  +    R D+   ++++M       + +S+  M+ G +   LL
Sbjct: 207 FDSKMDWEIVSWNCLMGGYVRKKRLDDARSLFDRMPVR----DKISWNIMITGYAQNGLL 262

Query: 228 DEGKQLHSHV-IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVS 286
            E ++L   + I+      ++F   A+V  +   G L EA + F+ +P  + +SWN++++
Sbjct: 263 SEARRLFEELPIR------DVFAWTAMVSGFVQNGMLDEATRIFEEMPEKNEVSWNAMIA 316

Query: 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346
            Y     I  A ELF +M   R   S  + V        TG                   
Sbjct: 317 GYVQSQQIEKARELFDQMP-SRNTSSWNTMV--------TG------------------- 348

Query: 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406
                       Y +C  I+ +  +F+  P R      ++++    SG  ++A+ +F  M
Sbjct: 349 ------------YAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKM 396

Query: 407 VDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG 466
             +G  L+   L+  L + +  A+  LG  + LH   +K+GF++      +L+  Y +CG
Sbjct: 397 KRDGGILNRSALACALSSCAEIAALELG--KQLHGRLVKAGFQTGYIAGNALLAMYGKCG 454

Query: 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526
            IE +  VFE I   ++V + +++ GY+R+G G+EAL + E M +  + PD VT + VL+
Sbjct: 455 SIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLS 513

Query: 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC 586
            C+H+G+V +G   FNSM   YGI A+ +HY+CMID+LGRAG LD+A  L++  P   D 
Sbjct: 514 ACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDA 573

Query: 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646
             W +LL + R+HG+  +G + A  + E+EP +  +Y  +SN Y+  G +    ++R   
Sbjct: 574 ATWGALLGASRIHGDTELGEKAAEKVFEMEPDNSGMYVLLSNLYAASGRWREVREMRSKM 633

Query: 647 LARKLTRDIGHSLIEV-NSCH 666
             + + +  G+S +E+ N  H
Sbjct: 634 RDKGVKKVPGYSWVEIQNKTH 654



 Score =  144 bits (364), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 122/484 (25%), Positives = 223/484 (46%), Gaps = 45/484 (9%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  ++ S N  +  +VK+G+L++A+ LF++MP +D+V++N ++SG  +    ++A  ++D
Sbjct: 118 PDRDLISWNVMLSGYVKNGNLSAARALFNQMPEKDVVSWNAMLSGFAQNGFVEEARKIFD 177

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI------------------HCRVLSLGF 141
           +M+   +K   S ++ +LS     G   +  ++                  + R   L  
Sbjct: 178 QML---VKNEIS-WNGLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVRKKRLDD 233

Query: 142 GLNLYIGSPLVDL---------YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRP 192
             +L+   P+ D          Y + G    A  LF+ELP R++  W  M+  F +    
Sbjct: 234 ARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFAWTAMVSGFVQNGML 293

Query: 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252
           DE  R++ +M     E N +S+  M+ G      +++ ++L   +        N    N 
Sbjct: 294 DEATRIFEEMP----EKNEVSWNAMIAGYVQSQQIEKARELFDQM-----PSRNTSSWNT 344

Query: 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312
           +V  Y+ CG++ +AK  FD +P  D ISW +++S YA      +AL LF +M+      +
Sbjct: 345 MVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFIKMKRDGGILN 404

Query: 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF 372
             +    L+  +    +  GKQ+HG + K GF  G +   +AL  MYGKC  IE +  VF
Sbjct: 405 RSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYI-AGNALLAMYGKCGSIEEAFDVF 463

Query: 373 ESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432
           E    + +   N+++      G  K+A+ +F  M    I  D+VTL   L A S +   +
Sbjct: 464 EDITEKDIVSWNTMIAGYARHGFGKEALALFESM-KMTIKPDDVTLVGVLSACSHTGLVD 522

Query: 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMN 491
            G     +      G  +N      ++D   R G ++ +  + + +P  P+   + +++ 
Sbjct: 523 KG-MEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYPDAATWGALL- 580

Query: 492 GYSR 495
           G SR
Sbjct: 581 GASR 584



 Score =  117 bits (292), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 73/272 (26%), Positives = 134/272 (49%), Gaps = 9/272 (3%)

Query: 40  PQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYD 99
           P  N  S N  +  + + G+++ AK LFDEMP RD +++  +ISG  +    ++AL+L+ 
Sbjct: 335 PSRNTSSWNTMVTGYAQCGNIDQAKILFDEMPQRDCISWAAMISGYAQSGQSEEALHLFI 394

Query: 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159
           +M   G   + S  +  LS C+       G Q+H R++  GF      G+ L+ +Y + G
Sbjct: 395 KMKRDGGILNRSALACALSSCAEIAALELGKQLHGRLVKAGFQTGYIAGNALLAMYGKCG 454

Query: 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219
               A D+F+++ E+++ +WN M+  +       E L ++  MK   ++P+ ++   ++ 
Sbjct: 455 SIEEAFDVFEDITEKDIVSWNTMIAGYARHGFGKEALALFESMKMT-IKPDDVTLVGVLS 513

Query: 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA---KKSFDFIPVD 276
            CS   L+D+G +  + + +   +  N      ++D     G L EA    KS  F P  
Sbjct: 514 ACSHTGLVDKGMEYFNSMYQNYGITANAKHYTCMIDLLGRAGRLDEALNLMKSMPFYP-- 571

Query: 277 DVISWNSIVS---IYADYDLIFDALELFFRMQ 305
           D  +W +++    I+ D +L   A E  F M+
Sbjct: 572 DAATWGALLGASRIHGDTELGEKAAEKVFEME 603



 Score = 67.0 bits (162), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 67/332 (20%), Positives = 136/332 (40%), Gaps = 64/332 (19%)

Query: 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323
           +E+K S   I   D++ WN  +S Y        AL +F  M+                  
Sbjct: 46  LESKNSDSTIVDSDIVKWNRKISAYMRKGQCESALSVFNGMR------------------ 87

Query: 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383
            R   V +   I GY++   FD                C     +  VFE  P R L   
Sbjct: 88  -RRSTVTYNAMISGYLSNNKFD----------------C-----ARKVFEKMPDRDLISW 125

Query: 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443
           N +++  + +GN+  A  +F  M ++    D V+ +  L   + +        ++     
Sbjct: 126 NVMLSGYVKNGNLSAARALFNQMPEK----DVVSWNAMLSGFAQNGFVEEAR-KIFDQML 180

Query: 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503
           +K+    N      L+ AY + G IE + ++F+      +V +  +M GY R    ++ L
Sbjct: 181 VKNEISWN-----GLLSAYVQNGRIEDARRLFDSKMDWEIVSWNCLMGGYVR----KKRL 231

Query: 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSM--KSVYGIDADRQHYSCMI 561
           D    +  R  + DK+++  ++ G   +G++ E + +F  +  + V+        ++ M+
Sbjct: 232 DDARSLFDRMPVRDKISWNIMITGYAQNGLLSEARRLFEELPIRDVFA-------WTAMV 284

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLL 593
               + G+LD+A  + ++ P   + + W++++
Sbjct: 285 SGFVQNGMLDEATRIFEEMPEKNE-VSWNAMI 315


>gi|225217011|gb|ACN85298.1| EMB2261 putative [Oryza coarctata]
          Length = 621

 Score =  258 bits (659), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 158/522 (30%), Positives = 274/522 (52%), Gaps = 10/522 (1%)

Query: 146 YIGSPLVDLYMRMGPSV-RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM-- 202
           Y+ + L+  Y+R+   +  AL  FD+LP R++   + +L AF     P   L     M  
Sbjct: 68  YLANALLAFYVRLPRHLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALSSLRSMLA 127

Query: 203 KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS 262
            A+ V PN  +F   V+ C++    + G  LH  ++  G+ D +I V +ALVD Y    +
Sbjct: 128 GADDVSPNAHAFSAAVKACAVLRDRNAGACLHGSILVRGFGDDDI-VLSALVDMYGHAAA 186

Query: 263 LIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLN 321
             +A+K+F+ +   D I + S++S +   D   +A+     M +    RP   +F   + 
Sbjct: 187 PGDARKAFEEMRTPDGICYTSLISAFVRNDWFEEAVRWSRSMLMLNGVRPDGCTFGSMMT 246

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
                     G+Q H  V   G   G+V V+S+  DMY KC +I  +  VF+    R+  
Sbjct: 247 ALGNLKMGNRGRQAHAQVVTRGL-CGNVIVESSTLDMYAKCRMIVEARKVFDRMQVRNAV 305

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
              +L+     +G  +  V +F  M  +    D  +L T L+A +  +S N G  + +HC
Sbjct: 306 SWCALLGGYCQNGEYEKVVALFREMDKDDD--DWYSLGTVLRACAGLSSVNPG--KEIHC 361

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             ++ G   N+ V  +L+D Y++CG ++ ++ VFE     N + + +++ G+++NG G  
Sbjct: 362 RFLRMGGWRNVVVESALVDLYAKCGAVDYAYGVFEASIVRNTITWNAMIGGFAQNGHGER 421

Query: 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561
           A+D+ + M++ G  PD ++F+ VL  C+H+GMV++G+  FNSM   Y I    +HY+CM+
Sbjct: 422 AIDLFDRMVKEGPRPDYISFVGVLFACSHTGMVEQGRKYFNSMSKDYSITPGIEHYNCMV 481

Query: 562 DMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621
           D+L R  +L++AE+L+ ++P   D  +W+++L +   H N  +  RVA   MELEP    
Sbjct: 482 DLLSRVELLEEAEDLINKSPFRDDSSLWAAILGASATHSNPDVAERVAKKTMELEPQYHL 541

Query: 622 VYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVN 663
            Y  + N Y  +G +E ++ IR    +RK+ ++ G S I+VN
Sbjct: 542 SYVLLENVYRTVGRWEDALDIRSLMKSRKVKKEPGMSWIDVN 583



 Score =  132 bits (333), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 178/371 (47%), Gaps = 7/371 (1%)

Query: 59  HLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG--IKESASTFSSV 116
           HL  A + FD++P RD+V ++ +++   +   P++AL     M++    +  +A  FS+ 
Sbjct: 83  HLPHALRAFDDLPRRDVVAHSSILAAFLRAGMPRRALSSLRSMLAGADDVSPNAHAFSAA 142

Query: 117 LSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL 176
           +  C+       G  +H  +L  GFG +  + S LVD+Y        A   F+E+   + 
Sbjct: 143 VKACAVLRDRNAGACLHGSILVRGFGDDDIVLSALVDMYGHAAAPGDARKAFEEMRTPDG 202

Query: 177 ATWNLMLRAFCELSRPDEVLRMYNKM-KAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235
             +  ++ AF      +E +R    M    GV P+G +F  M+       + + G+Q H+
Sbjct: 203 ICYTSLISAFVRNDWFEEAVRWSRSMLMLNGVRPDGCTFGSMMTALGNLKMGNRGRQAHA 262

Query: 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295
            V+  G    N+ V ++ +D Y+ C  ++EA+K FD + V + +SW +++  Y       
Sbjct: 263 QVVTRGLCG-NVIVESSTLDMYAKCRMIVEARKVFDRMQVRNAVSWCALLGGYCQNGEYE 321

Query: 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSAL 355
             + LF  M   +      S    L   +   +V  GK+IH    ++G    +V V+SAL
Sbjct: 322 KVVALFREMD--KDDDDWYSLGTVLRACAGLSSVNPGKEIHCRFLRMG-GWRNVVVESAL 378

Query: 356 TDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415
            D+Y KC  ++ +  VFE++  R+    N+++     +G+ + A+++F  MV EG   D 
Sbjct: 379 VDLYAKCGAVDYAYGVFEASIVRNTITWNAMIGGFAQNGHGERAIDLFDRMVKEGPRPDY 438

Query: 416 VTLSTTLKALS 426
           ++    L A S
Sbjct: 439 ISFVGVLFACS 449



 Score =  119 bits (297), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 86/335 (25%), Positives = 160/335 (47%), Gaps = 16/335 (4%)

Query: 51  IDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS-HGIKES 109
           +D +  +     A+K F+EM   D + Y  LIS   +    ++A+     M+  +G++  
Sbjct: 178 VDMYGHAAAPGDARKAFEEMRTPDGICYTSLISAFVRNDWFEEAVRWSRSMLMLNGVRPD 237

Query: 110 ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFD 169
             TF S+++   N      G Q H +V++ G   N+ + S  +D+Y +    V A  +FD
Sbjct: 238 GCTFGSMMTALGNLKMGNRGRQAHAQVVTRGLCGNVIVESSTLDMYAKCRMIVEARKVFD 297

Query: 170 ELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDE 229
            +  RN  +W  +L  +C+    ++V+ ++ +M  +  + +  S   ++R C+    ++ 
Sbjct: 298 RMQVRNAVSWCALLGGYCQNGEYEKVVALFREMDKD--DDDWYSLGTVLRACAGLSSVNP 355

Query: 230 GKQLHSHVIKL-GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY 288
           GK++H   +++ GW   N+ V +ALVD Y+ CG++  A   F+   V + I+WN+++  +
Sbjct: 356 GKEIHCRFLRMGGW--RNVVVESALVDLYAKCGAVDYAYGVFEASIVRNTITWNAMIGGF 413

Query: 289 ADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV-----YFGKQIHGYVTKLG 343
           A       A++LF RM     RP   SFV  L   S TG V     YF      Y    G
Sbjct: 414 AQNGHGERAIDLFDRMVKEGPRPDYISFVGVLFACSHTGMVEQGRKYFNSMSKDYSITPG 473

Query: 344 FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378
            +H      + + D+  +  ++E +  +   +P R
Sbjct: 474 IEH-----YNCMVDLLSRVELLEEAEDLINKSPFR 503



 Score = 98.6 bits (244), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 67/250 (26%), Positives = 121/250 (48%), Gaps = 3/250 (1%)

Query: 43  NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102
           N+   + T+D + K   +  A+K+FD M  R+ V++  L+ G  +    ++ + L+ EM 
Sbjct: 272 NVIVESSTLDMYAKCRMIVEARKVFDRMQVRNAVSWCALLGGYCQNGEYEKVVALFREMD 331

Query: 103 SHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162
                +   +  +VL  C+       G +IHCR L +G   N+ + S LVDLY + G   
Sbjct: 332 KD--DDDWYSLGTVLRACAGLSSVNPGKEIHCRFLRMGGWRNVVVESALVDLYAKCGAVD 389

Query: 163 RALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222
            A  +F+    RN  TWN M+  F +    +  + ++++M  EG  P+ +SF  ++  CS
Sbjct: 390 YAYGVFEASIVRNTITWNAMIGGFAQNGHGERAIDLFDRMVKEGPRPDYISFVGVLFACS 449

Query: 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV-DDVISW 281
              ++++G++  + + K   +   I   N +VD  S    L EA+   +  P  DD   W
Sbjct: 450 HTGMVEQGRKYFNSMSKDYSITPGIEHYNCMVDLLSRVELLEEAEDLINKSPFRDDSSLW 509

Query: 282 NSIVSIYADY 291
            +I+   A +
Sbjct: 510 AAILGASATH 519


>gi|356498444|ref|XP_003518062.1| PREDICTED: putative pentatricopeptide repeat-containing protein
           At3g13770, mitochondrial-like [Glycine max]
          Length = 634

 Score =  258 bits (659), Expect = 8e-66,   Method: Compositional matrix adjust.
 Identities = 143/465 (30%), Positives = 256/465 (55%), Gaps = 6/465 (1%)

Query: 202 MKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261
           M   G++ N   +  ++  C     + EG+++H+H+IK  ++   +++   L+ FY  C 
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPC-VYLRTRLIVFYVKCD 107

Query: 262 SLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321
           SL +A+  FD +P  +V+SW +++S Y+       AL LF +M      P+  +F   L 
Sbjct: 108 SLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLT 167

Query: 322 FASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE 381
               +     G+QIH ++ KL ++   V+V S+L DMY K   I  +  +F+  P R + 
Sbjct: 168 SCIGSSGFVLGRQIHSHIIKLNYE-AHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDVV 226

Query: 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441
            C ++++     G  ++A+E+F  +  EG+  + VT ++ L ALS  A+ + G  + +H 
Sbjct: 227 SCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHG--KQVHN 284

Query: 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGRE 501
             ++S   S + +  SL+D YS+CG++  + ++F+ +    V+ + +++ GYS++G GRE
Sbjct: 285 HLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGRE 344

Query: 502 ALDMLEVMIQRGLI-PDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS-VYGIDADRQHYSC 559
            L++  +MI    + PD VT L VL+GC+H G+  +G  +F  M S    +  D +HY C
Sbjct: 345 VLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGC 404

Query: 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619
           ++DMLGRAG ++ A E +++ P      +W  LL +C VH N  IG  V + L+++EP +
Sbjct: 405 VVDMLGRAGRVEAAFEFVKKMPFEPSAAIWGCLLGACSVHSNLDIGEFVGHQLLQIEPEN 464

Query: 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEVNS 664
              Y  +SN Y+  G +E    +R   L + +T++ G S IE++ 
Sbjct: 465 AGNYVILSNLYASAGRWEDVRSLRNLMLKKAVTKEPGRSWIELDQ 509



 Score =  156 bits (395), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 100/382 (26%), Positives = 192/382 (50%), Gaps = 7/382 (1%)

Query: 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160
           M   G+  +   +++VL+ C       EG ++H  ++   +   +Y+ + L+  Y++   
Sbjct: 49  MALRGLDTNFQDYNTVLNECLRKRAIREGQRVHAHMIKTHYLPCVYLRTRLIVFYVKCDS 108

Query: 161 SVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220
              A  +FD +PERN+ +W  M+ A+ +     + L ++ +M   G EPN  +F  ++  
Sbjct: 109 LRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLRSGTEPNEFTFATVLTS 168

Query: 221 C--SIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV 278
           C  S G +L  G+Q+HSH+IKL + + +++V ++L+D Y+  G + EA+  F  +P  DV
Sbjct: 169 CIGSSGFVL--GRQIHSHIIKLNY-EAHVYVGSSLLDMYAKDGKIHEARGIFQCLPERDV 225

Query: 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338
           +S  +I+S YA   L  +ALELF R+Q    + +  ++   L   S    +  GKQ+H +
Sbjct: 226 VSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSGLAALDHGKQVHNH 285

Query: 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKD 398
           + +       V +Q++L DMY KC  +  +  +F++   R++   N+++      G  ++
Sbjct: 286 LLRSEVP-SYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNAMLVGYSKHGEGRE 344

Query: 399 AVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457
            +E+F  M+DE  +  D VT+   L   S     + G        + K   + +      
Sbjct: 345 VLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSGKISVQPDSKHYGC 404

Query: 458 LMDAYSRCGHIELSHQVFEKIP 479
           ++D   R G +E + +  +K+P
Sbjct: 405 VVDMLGRAGRVEAAFEFVKKMP 426



 Score =  155 bits (393), Expect = 5e-35,   Method: Compositional matrix adjust.
 Identities = 97/336 (28%), Positives = 179/336 (53%), Gaps = 5/336 (1%)

Query: 44  IYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVS 103
           +Y   R I  +VK   L  A+ +FD MP R++V++  +IS   +  +  QAL L+ +M+ 
Sbjct: 93  VYLRTRLIVFYVKCDSLRDARHVFDVMPERNVVSWTAMISAYSQRGYASQALSLFVQMLR 152

Query: 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163
            G + +  TF++VL+ C  +  +  G QIH  ++ L +  ++Y+GS L+D+Y + G    
Sbjct: 153 SGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGKIHE 212

Query: 164 ALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223
           A  +F  LPER++ +   ++  + +L   +E L ++ +++ EG++ N +++  ++   S 
Sbjct: 213 ARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTALSG 272

Query: 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNS 283
              LD GKQ+H+H+++   V   + + N+L+D YS CG+L  A++ FD +    VISWN+
Sbjct: 273 LAALDHGKQVHNHLLR-SEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISWNA 331

Query: 284 IVSIYADYDLIFDALELFFRMQLCRK-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVT-- 340
           ++  Y+ +    + LELF  M    K +P   + +  L+  S  G    G  I   +T  
Sbjct: 332 MLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKGMDIFYDMTSG 391

Query: 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376
           K+     S H    + DM G+   +E++    +  P
Sbjct: 392 KISVQPDSKHY-GCVVDMLGRAGRVEAAFEFVKKMP 426



 Score = 99.0 bits (245), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 63/232 (27%), Positives = 116/232 (50%), Gaps = 2/232 (0%)

Query: 1   MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYC-QPNPQLNIYSSNRTIDDFVKSGH 59
           ML +   P   T  T+  +C           + S+  + N + ++Y  +  +D + K G 
Sbjct: 150 MLRSGTEPNEFTFATVLTSCIGSSGFVLGRQIHSHIIKLNYEAHVYVGSSLLDMYAKDGK 209

Query: 60  LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119
           ++ A+ +F  +P RD+V+   +ISG  +    ++AL L+  +   G++ +  T++SVL+ 
Sbjct: 210 IHEARGIFQCLPERDVVSCTAIISGYAQLGLDEEALELFRRLQREGMQSNYVTYTSVLTA 269

Query: 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATW 179
            S       G Q+H  +L       + + + L+D+Y + G    A  +FD L ER + +W
Sbjct: 270 LSGLAALDHGKQVHNHLLRSEVPSYVVLQNSLIDMYSKCGNLTYARRIFDTLHERTVISW 329

Query: 180 NLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEG 230
           N ML  + +     EVL ++N M  E  V+P+ ++   ++ GCS G L D+G
Sbjct: 330 NAMLVGYSKHGEGREVLELFNLMIDENKVKPDSVTVLAVLSGCSHGGLEDKG 381


  Database: nr
    Posted date:  Mar 3, 2013 10:45 PM
  Number of letters in database: 999,999,864
  Number of sequences in database:  2,912,245
  
  Database: /local_scratch/syshi//blastdatabase/nr.01
    Posted date:  Mar 3, 2013 10:52 PM
  Number of letters in database: 999,999,666
  Number of sequences in database:  2,912,720
  
  Database: /local_scratch/syshi//blastdatabase/nr.02
    Posted date:  Mar 3, 2013 10:58 PM
  Number of letters in database: 999,999,938
  Number of sequences in database:  3,014,250
  
  Database: /local_scratch/syshi//blastdatabase/nr.03
    Posted date:  Mar 3, 2013 11:03 PM
  Number of letters in database: 999,999,780
  Number of sequences in database:  2,805,020
  
  Database: /local_scratch/syshi//blastdatabase/nr.04
    Posted date:  Mar 3, 2013 11:08 PM
  Number of letters in database: 999,999,551
  Number of sequences in database:  2,816,253
  
  Database: /local_scratch/syshi//blastdatabase/nr.05
    Posted date:  Mar 3, 2013 11:13 PM
  Number of letters in database: 999,999,897
  Number of sequences in database:  2,981,387
  
  Database: /local_scratch/syshi//blastdatabase/nr.06
    Posted date:  Mar 3, 2013 11:18 PM
  Number of letters in database: 999,999,649
  Number of sequences in database:  2,911,476
  
  Database: /local_scratch/syshi//blastdatabase/nr.07
    Posted date:  Mar 3, 2013 11:24 PM
  Number of letters in database: 999,999,452
  Number of sequences in database:  2,920,260
  
  Database: /local_scratch/syshi//blastdatabase/nr.08
    Posted date:  Mar 3, 2013 11:25 PM
  Number of letters in database: 64,230,274
  Number of sequences in database:  189,558
  
Lambda     K      H
   0.323    0.137    0.413 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,893,986,586
Number of Sequences: 23463169
Number of extensions: 407359671
Number of successful extensions: 1080533
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 9139
Number of HSP's successfully gapped in prelim test: 2190
Number of HSP's that attempted gapping in prelim test: 862801
Number of HSP's gapped (non-prelim): 73819
length of query: 666
length of database: 8,064,228,071
effective HSP length: 149
effective length of query: 517
effective length of database: 8,863,183,186
effective search space: 4582265707162
effective search space used: 4582265707162
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 80 (35.4 bits)