BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 047767
(666 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3M4U|A Chain A, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
pdb|3M4U|B Chain B, Crystal Structure Of Trypanosoma Brucei Protein Tyrosine
Phosphatase Tbptp1
Length = 306
Score = 33.1 bits (74), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 30/94 (31%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 54 FVKSGH-----LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE 108
F +SGH A+ ++ D+V L+I GK H + Y HG+ E
Sbjct: 146 FPESGHDAIKVTRDAEASYEVDAELDIVRRPLVIHVPGKPMH-RVLQVQYVGWPDHGVPE 204
Query: 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG 142
SA++F +LSV N T I +HC S G G
Sbjct: 205 SAASFDELLSVIKNC-VTTSPILVHC---SAGIG 234
>pdb|3RDK|A Chain A, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|3RDK|B Chain B, Protein Crystal Structure Of Xylanase A1 Of Paenibacillus
Sp. Jdr-2
pdb|4E4P|A Chain A, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|4E4P|B Chain B, Second Native Structure Of Xylanase A1 From Paenibacillus
Sp. Jdr-2
pdb|3RO8|A Chain A, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|B Chain B, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|C Chain C, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|D Chain D, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|E Chain E, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|F Chain F, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|G Chain G, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
pdb|3RO8|H Chain H, Crystal Structure Of The Catalytic Domain Of Xyna1 From
Paenibacillus Sp. Jdr-2
Length = 341
Score = 32.0 bits (71), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 15/52 (28%), Positives = 27/52 (51%), Gaps = 7/52 (13%)
Query: 194 EVLRMY-------NKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238
E+L+M+ N MK + ++P +F + I +L EG ++H HV+
Sbjct: 32 ELLKMHHDVVTAGNAMKPDALQPTKGNFTFTAADAMIDKVLAEGMKMHGHVL 83
>pdb|1XKH|A Chain A, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
Aeruginosa Pao1 Bound To Pyoverdine
pdb|1XKH|B Chain B, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
Aeruginosa Pao1 Bound To Pyoverdine
pdb|1XKH|C Chain C, Pyoverdine Outer Membrane Receptor Fpva From Pseudomonas
Aeruginosa Pao1 Bound To Pyoverdine
Length = 687
Score = 31.2 bits (69), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFDALELFF 302
D+N+F+ +VD Y G ++S FIP V V N S+YA Y IF + ++
Sbjct: 414 DLNLFLGGRVVD-YRVTGLNPTIRESGRFIPYVGAVYDLNDTYSVYASYTDIFXPQDSWY 472
Query: 303 R 303
R
Sbjct: 473 R 473
>pdb|4G24|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Mn
pdb|4G26|A Chain A, Crystal Structure Of Proteinaceous Rnase P 1 (Prorp1) From
A. Thaliana With Ca
Length = 501
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 34/122 (27%), Positives = 53/122 (43%), Gaps = 22/122 (18%)
Query: 93 QALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152
+AL LYDE +G++ S ++ +L VCS A TE LS GF
Sbjct: 44 EALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPG--LSRGF----------- 90
Query: 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL 212
D++ +M + D++ N AT+ R P+ M +MKA G++P
Sbjct: 91 DIFKQM--------IVDKVVP-NEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLR 141
Query: 213 SF 214
S+
Sbjct: 142 SY 143
>pdb|3FZE|A Chain A, Structure Of The 'minimal Scaffold' (Ms) Domain Of Ste5
That Cocatalyzes Fus3 Phosphorylation By Ste7
Length = 196
Score = 29.6 bits (65), Expect = 5.6, Method: Composition-based stats.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 6/70 (8%)
Query: 165 LDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224
L L E P+ NLA ++ F +L D ++ +YN +KA ++ L FC++ R
Sbjct: 10 LSLKREKPD-NLAI--ILQIDFTKLKEEDSLIVVYNSLKALTIKFARLQFCFVDRN---N 63
Query: 225 MLLDEGKQLH 234
+LD G LH
Sbjct: 64 YVLDYGSVLH 73
>pdb|4F2H|A Chain A, Structure Of The Minimal Ste5 Vwa Domain Subject To
Autoinhibition By The Ste5 Ph Domain
Length = 207
Score = 29.6 bits (65), Expect = 6.1, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 26/49 (53%), Gaps = 3/49 (6%)
Query: 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234
F +L D ++ +YN +KA ++ L FC++ R +LD G LH
Sbjct: 38 FTKLKEEDSLIVVYNSLKALTIKFARLQFCFVDRN---NYVLDYGSVLH 83
>pdb|3FXA|A Chain A, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|B Chain B, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|C Chain C, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
pdb|3FXA|D Chain D, Crystal Structure Of A Putative Sugar-Phosphate Isomerase
(Lmof2365_0531) From Listeria Monocytogenes Str. 4b
F2365 At 1.60 A Resolution
Length = 201
Score = 29.3 bits (64), Expect = 7.1, Method: Composition-based stats.
Identities = 27/86 (31%), Positives = 44/86 (51%), Gaps = 14/86 (16%)
Query: 524 VLAGCNHSGMVKEGQLV--FNSMK--SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579
V+AGC SG V +LV FN ++ +V+ +D H G G+L K E++L
Sbjct: 49 VVAGCGTSG-VAAKKLVHSFNCIERPAVFLTPSDAVH--------GTLGVLQK-EDILIL 98
Query: 580 TPGGGDCMMWSSLLRSCRVHGNEIIG 605
GG+ +L+ +C+ G+ +IG
Sbjct: 99 ISKGGNTGELLNLIPACKTKGSTLIG 124
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.137 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 18,852,406
Number of Sequences: 62578
Number of extensions: 779265
Number of successful extensions: 2015
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 2009
Number of HSP's gapped (non-prelim): 10
length of query: 666
length of database: 14,973,337
effective HSP length: 105
effective length of query: 561
effective length of database: 8,402,647
effective search space: 4713884967
effective search space used: 4713884967
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.8 bits)