Query 047767
Match_columns 666
No_of_seqs 584 out of 3172
Neff 11.6
Searched_HMMs 46136
Date Fri Mar 29 02:56:05 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047767.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/047767hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PLN03077 Protein ECB2; Provisi 100.0 8E-99 2E-103 823.0 70.7 659 1-665 77-736 (857)
2 PLN03077 Protein ECB2; Provisi 100.0 4.4E-79 9.5E-84 667.6 64.6 576 72-655 48-625 (857)
3 PLN03081 pentatricopeptide (PP 100.0 2E-72 4.3E-77 600.5 56.8 487 174-664 85-572 (697)
4 PLN03218 maturation of RBCL 1; 100.0 2.4E-68 5.1E-73 569.5 52.6 520 43-581 369-907 (1060)
5 PLN03081 pentatricopeptide (PP 100.0 7.2E-67 1.6E-71 557.7 52.0 475 72-553 84-562 (697)
6 PLN03218 maturation of RBCL 1; 100.0 1.5E-65 3.3E-70 548.0 57.1 513 106-656 366-916 (1060)
7 TIGR02917 PEP_TPR_lipo putativ 100.0 1.5E-36 3.3E-41 342.1 61.5 624 9-647 226-898 (899)
8 TIGR02917 PEP_TPR_lipo putativ 100.0 4.9E-36 1.1E-40 338.0 61.9 630 7-652 190-869 (899)
9 PRK11447 cellulose synthase su 100.0 1.2E-26 2.7E-31 260.6 60.1 617 14-652 32-744 (1157)
10 PRK11447 cellulose synthase su 100.0 2.3E-25 5E-30 250.3 54.7 588 48-652 32-703 (1157)
11 PRK09782 bacteriophage N4 rece 100.0 9.2E-23 2E-27 218.4 56.8 562 56-650 56-707 (987)
12 PRK09782 bacteriophage N4 rece 99.9 1.3E-22 2.7E-27 217.4 52.9 603 22-651 56-742 (987)
13 KOG4626 O-linked N-acetylgluco 99.9 3.8E-21 8.3E-26 182.5 29.5 377 178-638 118-508 (966)
14 KOG4626 O-linked N-acetylgluco 99.9 3.1E-20 6.7E-25 176.4 29.7 420 180-649 52-485 (966)
15 KOG2002 TPR-containing nuclear 99.9 6.5E-18 1.4E-22 169.4 43.8 578 60-652 146-801 (1018)
16 TIGR00990 3a0801s09 mitochondr 99.9 2.9E-18 6.2E-23 181.4 39.1 419 179-650 130-572 (615)
17 PRK10049 pgaA outer membrane p 99.9 4.6E-17 9.9E-22 175.3 44.6 392 182-649 21-456 (765)
18 PRK11788 tetratricopeptide rep 99.8 8.2E-19 1.8E-23 176.4 28.0 298 285-657 42-355 (389)
19 KOG2002 TPR-containing nuclear 99.8 1.1E-15 2.3E-20 153.8 45.9 547 91-650 146-746 (1018)
20 PRK10049 pgaA outer membrane p 99.8 2.8E-16 6.1E-21 169.2 43.5 407 109-624 14-465 (765)
21 PRK15174 Vi polysaccharide exp 99.8 4.7E-17 1E-21 171.3 36.4 329 280-620 44-386 (656)
22 PRK14574 hmsH outer membrane p 99.8 1.1E-15 2.4E-20 161.1 45.1 432 155-620 44-518 (822)
23 PRK11788 tetratricopeptide rep 99.8 3E-18 6.5E-23 172.4 24.0 290 52-346 43-351 (389)
24 KOG4422 Uncharacterized conser 99.8 3.8E-16 8.3E-21 142.4 34.6 443 11-539 117-617 (625)
25 TIGR00990 3a0801s09 mitochondr 99.8 2.8E-16 6E-21 166.4 39.7 252 327-621 308-577 (615)
26 KOG4318 Bicoid mRNA stability 99.8 5.6E-16 1.2E-20 153.8 38.1 484 2-514 17-596 (1088)
27 KOG4422 Uncharacterized conser 99.8 8.2E-15 1.8E-19 133.9 40.8 327 76-449 117-465 (625)
28 PRK15174 Vi polysaccharide exp 99.8 1.1E-16 2.5E-21 168.4 33.3 326 314-652 43-384 (656)
29 PRK14574 hmsH outer membrane p 99.8 8E-15 1.7E-19 154.6 42.2 137 452-593 367-524 (822)
30 KOG2076 RNA polymerase III tra 99.8 7.1E-14 1.5E-18 140.0 46.2 585 56-649 151-849 (895)
31 KOG2003 TPR repeat-containing 99.7 1.6E-15 3.4E-20 139.4 26.0 170 462-635 534-709 (840)
32 KOG0495 HAT repeat protein [RN 99.7 5.6E-12 1.2E-16 121.8 49.5 622 7-662 243-891 (913)
33 KOG0495 HAT repeat protein [RN 99.7 4.5E-12 9.7E-17 122.4 47.6 538 89-652 265-849 (913)
34 KOG2076 RNA polymerase III tra 99.7 8.8E-13 1.9E-17 132.3 41.5 540 88-632 152-786 (895)
35 KOG4318 Bicoid mRNA stability 99.7 1.4E-13 3E-18 137.2 35.4 519 96-654 11-599 (1088)
36 PF13429 TPR_15: Tetratricopep 99.7 5.5E-16 1.2E-20 147.2 11.0 214 430-648 57-276 (280)
37 KOG0547 Translocase of outer m 99.6 1.9E-12 4.2E-17 120.7 31.1 410 180-647 119-564 (606)
38 KOG2003 TPR repeat-containing 99.6 2.7E-11 6E-16 111.9 31.9 447 184-649 209-689 (840)
39 KOG1126 DNA-binding cell divis 99.6 6E-13 1.3E-17 129.3 21.4 278 364-652 334-623 (638)
40 KOG1915 Cell cycle control pro 99.5 8.6E-10 1.9E-14 103.0 39.6 450 156-614 84-584 (677)
41 KOG1915 Cell cycle control pro 99.5 3E-10 6.6E-15 105.9 35.6 446 188-647 85-583 (677)
42 PRK10747 putative protoheme IX 99.5 3.6E-11 7.9E-16 119.5 31.5 223 356-615 160-390 (398)
43 KOG1173 Anaphase-promoting com 99.5 2.8E-11 6E-16 115.4 27.9 258 348-648 243-517 (611)
44 PRK10747 putative protoheme IX 99.5 1.3E-11 2.8E-16 122.8 26.2 249 390-648 128-389 (398)
45 TIGR00540 hemY_coli hemY prote 99.5 5.8E-11 1.3E-15 118.8 31.1 287 290-614 96-398 (409)
46 KOG2047 mRNA splicing factor [ 99.5 3.4E-09 7.3E-14 102.9 39.8 312 224-577 360-717 (835)
47 KOG1155 Anaphase-promoting com 99.5 4.2E-10 9E-15 104.8 31.9 311 325-648 176-494 (559)
48 KOG1155 Anaphase-promoting com 99.5 1E-09 2.3E-14 102.2 33.2 122 454-579 366-491 (559)
49 PF13429 TPR_15: Tetratricopep 99.4 4.3E-13 9.3E-18 127.4 10.7 221 82-306 15-242 (280)
50 KOG3785 Uncharacterized conser 99.4 4.3E-10 9.3E-15 100.9 28.2 455 82-623 29-497 (557)
51 TIGR00540 hemY_coli hemY prote 99.4 1.6E-10 3.4E-15 115.8 28.8 280 325-648 96-398 (409)
52 KOG2047 mRNA splicing factor [ 99.4 6E-08 1.3E-12 94.5 44.2 555 45-643 103-717 (835)
53 KOG1126 DNA-binding cell divis 99.4 1.5E-11 3.3E-16 119.8 19.7 247 394-650 333-587 (638)
54 COG3071 HemY Uncharacterized e 99.4 1.4E-09 3E-14 99.9 29.8 286 291-614 97-389 (400)
55 KOG1174 Anaphase-promoting com 99.4 4.5E-09 9.8E-14 96.6 32.3 307 309-623 190-508 (564)
56 KOG0547 Translocase of outer m 99.4 2.6E-09 5.5E-14 100.4 30.7 85 78-166 118-204 (606)
57 TIGR02521 type_IV_pilW type IV 99.4 8.6E-11 1.9E-15 109.2 21.4 197 451-648 30-231 (234)
58 KOG2376 Signal recognition par 99.4 2.8E-08 6.2E-13 95.8 37.7 441 185-646 21-517 (652)
59 KOG1173 Anaphase-promoting com 99.4 2.8E-09 6.1E-14 102.1 30.4 280 277-630 243-533 (611)
60 COG3071 HemY Uncharacterized e 99.3 1.3E-09 2.9E-14 100.0 24.8 249 393-647 97-388 (400)
61 KOG4162 Predicted calmodulin-b 99.3 5.2E-08 1.1E-12 97.1 37.6 127 521-650 653-784 (799)
62 COG3063 PilF Tfp pilus assembl 99.3 1.2E-10 2.7E-15 98.5 16.8 161 486-651 38-204 (250)
63 KOG0985 Vesicle coat protein c 99.3 1.8E-07 3.8E-12 95.7 40.0 546 47-646 609-1246(1666)
64 PF13041 PPR_2: PPR repeat fam 99.3 8.9E-12 1.9E-16 82.0 6.8 50 481-530 1-50 (50)
65 COG2956 Predicted N-acetylgluc 99.3 1.6E-09 3.4E-14 96.4 22.4 266 348-655 68-353 (389)
66 KOG3785 Uncharacterized conser 99.3 4.4E-08 9.5E-13 88.4 31.0 447 51-557 29-497 (557)
67 KOG1129 TPR repeat-containing 99.3 2.3E-10 4.9E-15 101.6 16.2 225 384-651 227-460 (478)
68 PF13041 PPR_2: PPR repeat fam 99.3 1.3E-11 2.7E-16 81.3 6.0 50 174-223 1-50 (50)
69 KOG1156 N-terminal acetyltrans 99.2 2.6E-07 5.6E-12 90.5 36.2 234 78-318 11-257 (700)
70 PRK11189 lipoprotein NlpI; Pro 99.2 1.4E-09 3.1E-14 103.3 19.5 189 455-650 67-266 (296)
71 COG2956 Predicted N-acetylgluc 99.2 1.4E-08 3E-13 90.6 23.4 60 283-343 112-171 (389)
72 KOG1840 Kinesin light chain [C 99.2 3.5E-09 7.6E-14 104.7 21.4 191 457-647 246-477 (508)
73 KOG3616 Selective LIM binding 99.2 5E-06 1.1E-10 82.6 42.1 188 56-272 744-933 (1636)
74 PRK12370 invasion protein regu 99.2 3.2E-09 7E-14 110.6 21.3 245 394-649 275-535 (553)
75 TIGR02521 type_IV_pilW type IV 99.2 2.5E-09 5.4E-14 99.3 18.7 164 482-649 30-198 (234)
76 PRK12370 invasion protein regu 99.2 3.6E-09 7.8E-14 110.2 21.6 212 393-617 317-537 (553)
77 KOG2376 Signal recognition par 99.1 1.3E-06 2.8E-11 84.8 34.2 443 83-581 20-518 (652)
78 KOG1129 TPR repeat-containing 99.1 1.1E-09 2.3E-14 97.4 12.1 240 348-627 222-470 (478)
79 KOG1156 N-terminal acetyltrans 99.1 1.6E-06 3.5E-11 85.1 34.1 216 157-377 19-247 (700)
80 PF12569 NARP1: NMDA receptor- 99.1 2E-06 4.3E-11 86.7 36.1 252 52-309 12-293 (517)
81 KOG1840 Kinesin light chain [C 99.1 1.2E-07 2.5E-12 94.1 26.0 201 384-614 245-478 (508)
82 PF12569 NARP1: NMDA receptor- 99.1 3.2E-07 7E-12 92.3 29.4 234 83-341 12-256 (517)
83 KOG3616 Selective LIM binding 99.1 1.7E-06 3.8E-11 85.7 32.9 358 159-580 545-908 (1636)
84 KOG3617 WD40 and TPR repeat-co 99.0 5.4E-06 1.2E-10 83.5 36.0 372 54-478 738-1171(1416)
85 PRK11189 lipoprotein NlpI; Pro 99.0 2.2E-07 4.7E-12 88.5 24.4 199 427-633 74-284 (296)
86 KOG4340 Uncharacterized conser 99.0 9.5E-07 2.1E-11 78.0 25.8 401 224-651 23-445 (459)
87 KOG0624 dsRNA-activated protei 99.0 3.7E-07 7.9E-12 82.2 23.6 163 454-621 191-376 (504)
88 PF04733 Coatomer_E: Coatomer 99.0 5.3E-08 1.2E-12 91.0 19.5 154 460-620 110-270 (290)
89 KOG1174 Anaphase-promoting com 99.0 1.9E-06 4.1E-11 79.8 28.5 297 207-545 190-498 (564)
90 KOG4162 Predicted calmodulin-b 99.0 2.2E-06 4.8E-11 85.9 30.2 448 38-621 317-789 (799)
91 KOG1125 TPR repeat-containing 99.0 3.3E-08 7.1E-13 95.4 16.5 192 451-647 318-525 (579)
92 KOG1127 TPR repeat-containing 99.0 1.1E-05 2.4E-10 83.2 35.1 374 13-405 495-909 (1238)
93 KOG0985 Vesicle coat protein c 98.9 0.00012 2.6E-09 75.9 46.3 322 46-374 362-749 (1666)
94 COG3063 PilF Tfp pilus assembl 98.9 2.4E-07 5.2E-12 79.0 18.8 191 455-647 38-234 (250)
95 KOG3617 WD40 and TPR repeat-co 98.9 4.4E-05 9.6E-10 77.2 37.0 261 72-376 723-994 (1416)
96 TIGR03302 OM_YfiO outer membra 98.9 1.2E-07 2.6E-12 87.7 18.0 60 591-650 171-233 (235)
97 KOG0548 Molecular co-chaperone 98.9 2.5E-06 5.5E-11 82.0 26.8 175 458-643 304-483 (539)
98 KOG0548 Molecular co-chaperone 98.9 2.6E-06 5.7E-11 81.9 26.0 206 431-650 238-456 (539)
99 PRK10370 formate-dependent nit 98.9 2E-07 4.3E-12 82.2 17.4 149 491-653 24-177 (198)
100 PF04733 Coatomer_E: Coatomer 98.8 6.8E-07 1.5E-11 83.7 19.1 56 352-409 105-160 (290)
101 KOG1127 TPR repeat-containing 98.8 3.1E-05 6.7E-10 80.1 31.9 493 146-648 493-1103(1238)
102 PRK15359 type III secretion sy 98.8 7.3E-08 1.6E-12 80.3 11.4 103 524-629 30-135 (144)
103 PRK15359 type III secretion sy 98.8 8.7E-08 1.9E-12 79.8 11.8 108 539-651 14-123 (144)
104 cd05804 StaR_like StaR_like; a 98.8 6.7E-06 1.5E-10 81.6 26.8 298 348-650 5-337 (355)
105 PRK04841 transcriptional regul 98.7 3.7E-05 8.1E-10 86.8 33.8 193 457-649 536-760 (903)
106 KOG4340 Uncharacterized conser 98.7 2.7E-05 5.8E-10 69.2 25.0 350 104-509 4-372 (459)
107 COG5010 TadD Flp pilus assembl 98.7 1.4E-06 3.1E-11 76.1 15.6 155 487-644 70-226 (257)
108 KOG1070 rRNA processing protei 98.7 1.7E-06 3.7E-11 92.0 18.9 202 449-654 1455-1668(1710)
109 PRK15363 pathogenicity island 98.7 8.2E-07 1.8E-11 72.2 13.0 97 554-650 35-133 (157)
110 PF12854 PPR_1: PPR repeat 98.6 3.1E-08 6.8E-13 58.1 3.3 34 38-71 1-34 (34)
111 cd05804 StaR_like StaR_like; a 98.6 5.8E-05 1.2E-09 75.0 27.6 266 382-651 8-295 (355)
112 COG4783 Putative Zn-dependent 98.6 1.5E-05 3.2E-10 76.2 21.5 136 493-650 316-455 (484)
113 PRK15179 Vi polysaccharide bio 98.6 4.8E-06 1E-10 87.3 20.1 126 518-646 86-214 (694)
114 PRK10370 formate-dependent nit 98.6 4E-06 8.6E-11 74.0 16.3 153 459-624 23-182 (198)
115 TIGR02552 LcrH_SycD type III s 98.6 9.7E-07 2.1E-11 73.4 11.4 100 551-650 13-115 (135)
116 PLN02789 farnesyltranstransfer 98.5 1.8E-05 4E-10 75.1 21.0 179 464-646 83-299 (320)
117 KOG0624 dsRNA-activated protei 98.5 9.3E-05 2E-09 67.2 23.9 84 493-581 279-368 (504)
118 KOG3060 Uncharacterized conser 98.5 7.3E-06 1.6E-10 71.1 15.3 186 464-653 24-224 (289)
119 COG5010 TadD Flp pilus assembl 98.5 1.5E-05 3.4E-10 69.8 17.5 92 556-647 102-195 (257)
120 PF12854 PPR_1: PPR repeat 98.5 2E-07 4.4E-12 54.6 4.1 32 549-580 2-33 (34)
121 KOG1128 Uncharacterized conser 98.5 6.8E-06 1.5E-10 82.1 16.4 191 448-648 394-615 (777)
122 KOG1128 Uncharacterized conser 98.4 5.9E-06 1.3E-10 82.4 15.4 214 348-581 397-614 (777)
123 PRK15179 Vi polysaccharide bio 98.4 2.4E-05 5.2E-10 82.2 20.9 140 481-625 84-227 (694)
124 TIGR03302 OM_YfiO outer membra 98.4 8.6E-06 1.9E-10 75.3 15.5 162 451-617 32-234 (235)
125 PLN02789 farnesyltranstransfer 98.4 1.4E-05 2.9E-10 76.0 16.4 186 460-650 45-251 (320)
126 PRK14720 transcript cleavage f 98.4 4.9E-05 1.1E-09 80.7 21.7 44 588-631 225-268 (906)
127 KOG3081 Vesicle coat complex C 98.4 0.00016 3.6E-09 63.5 20.9 155 459-620 115-276 (299)
128 KOG2053 Mitochondrial inherita 98.4 0.0046 1E-07 64.1 35.2 72 188-263 55-126 (932)
129 PF09295 ChAPs: ChAPs (Chs5p-A 98.4 5.3E-06 1.1E-10 80.3 12.8 122 520-646 171-294 (395)
130 PRK04841 transcriptional regul 98.4 0.00081 1.8E-08 76.1 32.6 261 287-547 461-760 (903)
131 KOG1125 TPR repeat-containing 98.3 4.7E-05 1E-09 74.2 18.5 249 324-605 296-561 (579)
132 KOG1070 rRNA processing protei 98.3 0.0001 2.2E-09 79.1 22.3 244 90-336 1440-1694(1710)
133 KOG3060 Uncharacterized conser 98.3 3E-05 6.4E-10 67.4 14.9 180 448-632 47-237 (289)
134 COG4783 Putative Zn-dependent 98.3 7.5E-05 1.6E-09 71.6 18.2 117 528-647 316-435 (484)
135 KOG1914 mRNA cleavage and poly 98.3 0.0047 1E-07 60.3 35.7 174 395-571 346-527 (656)
136 PF09976 TPR_21: Tetratricopep 98.3 2.3E-05 5.1E-10 65.7 13.0 115 531-646 24-144 (145)
137 TIGR02552 LcrH_SycD type III s 98.3 2E-05 4.3E-10 65.5 12.5 114 505-622 5-121 (135)
138 PF09976 TPR_21: Tetratricopep 98.2 4.6E-05 9.9E-10 63.9 14.4 125 485-613 14-145 (145)
139 PF13414 TPR_11: TPR repeat; P 98.2 4E-06 8.7E-11 59.9 6.0 65 585-649 2-67 (69)
140 KOG2053 Mitochondrial inherita 98.2 0.013 2.7E-07 61.0 39.0 158 485-647 438-606 (932)
141 TIGR02795 tol_pal_ybgF tol-pal 98.2 2E-05 4.3E-10 63.8 10.7 95 556-650 4-106 (119)
142 PF13432 TPR_16: Tetratricopep 98.2 4.5E-06 9.9E-11 58.7 5.7 59 592-650 3-61 (65)
143 cd00189 TPR Tetratricopeptide 98.2 1.8E-05 4E-10 61.0 9.7 94 556-649 2-97 (100)
144 KOG0553 TPR repeat-containing 98.2 1.3E-05 2.9E-10 71.7 9.3 107 528-637 91-200 (304)
145 COG4235 Cytochrome c biogenesi 98.1 2.3E-05 5E-10 70.7 10.6 111 551-661 153-268 (287)
146 TIGR00756 PPR pentatricopeptid 98.1 4.1E-06 8.9E-11 50.2 4.0 35 76-110 1-35 (35)
147 PF09295 ChAPs: ChAPs (Chs5p-A 98.1 6.5E-05 1.4E-09 72.9 14.2 126 454-584 171-298 (395)
148 TIGR00756 PPR pentatricopeptid 98.1 5E-06 1.1E-10 49.8 4.2 33 485-517 2-34 (35)
149 PF12895 Apc3: Anaphase-promot 98.1 2.3E-06 4.9E-11 63.9 3.0 78 567-645 2-83 (84)
150 PF13812 PPR_3: Pentatricopept 98.1 5.8E-06 1.3E-10 49.1 3.9 33 76-108 2-34 (34)
151 PF13812 PPR_3: Pentatricopept 98.1 7.5E-06 1.6E-10 48.6 4.2 33 484-516 2-34 (34)
152 KOG3081 Vesicle coat complex C 98.0 0.0023 5.1E-08 56.5 20.2 105 465-572 150-259 (299)
153 PLN03088 SGT1, suppressor of 98.0 4.4E-05 9.4E-10 74.6 11.1 107 524-633 8-117 (356)
154 PF04840 Vps16_C: Vps16, C-ter 98.0 0.014 3E-07 55.6 26.9 105 456-577 181-285 (319)
155 PRK14720 transcript cleavage f 98.0 0.003 6.4E-08 67.7 23.7 174 286-494 91-268 (906)
156 PRK15331 chaperone protein Sic 98.0 6.6E-05 1.4E-09 61.6 9.1 100 549-648 31-133 (165)
157 KOG0553 TPR repeat-containing 98.0 3.1E-05 6.7E-10 69.4 7.8 88 561-648 88-177 (304)
158 TIGR02795 tol_pal_ybgF tol-pal 97.9 0.00014 3E-09 58.8 11.2 105 520-624 4-114 (119)
159 PRK02603 photosystem I assembl 97.9 0.00014 3E-09 63.1 11.2 96 554-649 35-149 (172)
160 COG4700 Uncharacterized protei 97.9 0.0008 1.7E-08 55.7 14.5 133 514-648 85-221 (251)
161 KOG1914 mRNA cleavage and poly 97.9 0.03 6.5E-07 54.9 34.9 174 468-644 347-534 (656)
162 PF14559 TPR_19: Tetratricopep 97.9 1.8E-05 3.9E-10 56.3 4.1 54 597-650 2-55 (68)
163 PF13371 TPR_9: Tetratricopept 97.9 4.6E-05 1E-09 55.1 6.3 59 593-651 2-60 (73)
164 PLN03088 SGT1, suppressor of 97.9 0.00018 3.9E-09 70.3 12.4 94 489-587 8-104 (356)
165 PF13432 TPR_16: Tetratricopep 97.8 4.3E-05 9.3E-10 53.6 5.3 61 560-620 3-65 (65)
166 PRK10153 DNA-binding transcrip 97.8 0.00071 1.5E-08 69.1 15.6 140 480-621 334-488 (517)
167 PF13431 TPR_17: Tetratricopep 97.8 1.4E-05 3.1E-10 46.8 2.0 33 609-641 2-34 (34)
168 CHL00033 ycf3 photosystem I as 97.8 0.00018 3.9E-09 62.2 9.6 93 554-646 35-139 (168)
169 PRK02603 photosystem I assembl 97.7 0.00069 1.5E-08 58.8 12.9 130 482-635 34-166 (172)
170 PF01535 PPR: PPR repeat; Int 97.7 3.8E-05 8.1E-10 44.3 3.3 30 77-106 2-31 (31)
171 PF12895 Apc3: Anaphase-promot 97.7 9.1E-05 2E-09 55.2 5.9 80 532-611 3-83 (84)
172 PF04840 Vps16_C: Vps16, C-ter 97.7 0.031 6.7E-07 53.3 23.7 108 520-644 179-286 (319)
173 PF01535 PPR: PPR repeat; Int 97.7 5.1E-05 1.1E-09 43.8 3.1 30 485-514 2-31 (31)
174 PRK10153 DNA-binding transcrip 97.7 0.0012 2.7E-08 67.4 15.0 135 513-651 332-484 (517)
175 COG4700 Uncharacterized protei 97.7 0.0013 2.7E-08 54.6 11.8 102 548-649 83-189 (251)
176 PF07079 DUF1347: Protein of u 97.6 0.072 1.6E-06 51.3 31.9 146 54-222 16-178 (549)
177 PF14938 SNAP: Soluble NSF att 97.6 0.0062 1.4E-07 57.7 18.1 141 489-644 100-261 (282)
178 PF05843 Suf: Suppressor of fo 97.6 0.0028 6.1E-08 59.7 15.0 134 484-620 2-141 (280)
179 cd00189 TPR Tetratricopeptide 97.6 0.00056 1.2E-08 52.4 8.9 91 524-617 6-99 (100)
180 PF12688 TPR_5: Tetratrico pep 97.6 0.00087 1.9E-08 53.0 9.6 87 559-645 6-100 (120)
181 PRK15363 pathogenicity island 97.6 0.0029 6.3E-08 51.9 12.7 102 475-581 26-130 (157)
182 COG3898 Uncharacterized membra 97.5 0.079 1.7E-06 49.9 24.1 284 350-648 83-391 (531)
183 PF14559 TPR_19: Tetratricopep 97.5 0.00013 2.7E-09 51.8 4.1 57 566-622 3-61 (68)
184 PF08579 RPM2: Mitochondrial r 97.5 0.00089 1.9E-08 50.6 8.4 79 79-157 29-116 (120)
185 PLN03098 LPA1 LOW PSII ACCUMUL 97.5 0.00043 9.4E-09 66.8 8.6 62 554-615 75-141 (453)
186 PF13414 TPR_11: TPR repeat; P 97.5 0.00023 5E-09 50.6 5.2 64 554-617 3-69 (69)
187 KOG0550 Molecular chaperone (D 97.5 0.0016 3.4E-08 61.3 11.6 163 461-629 178-363 (486)
188 PRK10803 tol-pal system protei 97.5 0.00086 1.9E-08 61.8 10.0 98 520-620 145-251 (263)
189 PF08579 RPM2: Mitochondrial r 97.5 0.0013 2.8E-08 49.8 8.8 79 180-259 29-116 (120)
190 PF10037 MRP-S27: Mitochondria 97.4 0.0008 1.7E-08 65.8 9.6 121 38-158 60-186 (429)
191 KOG2041 WD40 repeat protein [G 97.4 0.14 3E-06 52.0 24.6 54 348-406 851-904 (1189)
192 CHL00033 ycf3 photosystem I as 97.4 0.003 6.4E-08 54.6 12.2 97 522-619 39-153 (168)
193 PF13428 TPR_14: Tetratricopep 97.4 0.00028 6.2E-09 44.5 4.2 42 587-628 2-43 (44)
194 KOG2041 WD40 repeat protein [G 97.4 0.12 2.5E-06 52.6 23.7 200 107-336 689-901 (1189)
195 PRK10866 outer membrane biogen 97.4 0.022 4.7E-07 52.2 18.0 56 592-647 181-239 (243)
196 PF14938 SNAP: Soluble NSF att 97.4 0.093 2E-06 49.7 22.9 97 485-581 157-264 (282)
197 PF10037 MRP-S27: Mitochondria 97.4 0.0015 3.3E-08 63.9 10.7 83 177-260 104-186 (429)
198 PF07079 DUF1347: Protein of u 97.3 0.17 3.7E-06 48.8 33.1 136 21-157 17-179 (549)
199 PF13424 TPR_12: Tetratricopep 97.2 0.00049 1.1E-08 50.4 4.5 62 587-648 6-74 (78)
200 PRK10803 tol-pal system protei 97.2 0.0035 7.6E-08 57.8 11.0 96 555-650 144-247 (263)
201 PF13371 TPR_9: Tetratricopept 97.2 0.0012 2.6E-08 47.6 6.3 65 561-625 2-68 (73)
202 COG3898 Uncharacterized membra 97.2 0.2 4.4E-06 47.3 22.6 256 382-646 84-355 (531)
203 KOG1130 Predicted G-alpha GTPa 97.2 0.0043 9.2E-08 58.3 11.0 129 520-648 197-343 (639)
204 KOG2796 Uncharacterized conser 97.2 0.014 3.1E-07 51.5 13.3 134 485-619 179-319 (366)
205 PF06239 ECSIT: Evolutionarily 97.2 0.0016 3.5E-08 56.0 7.5 99 62-160 32-153 (228)
206 KOG0543 FKBP-type peptidyl-pro 97.2 0.0029 6.3E-08 59.8 9.7 96 554-649 257-355 (397)
207 KOG2280 Vacuolar assembly/sort 97.1 0.4 8.6E-06 49.5 24.5 136 204-341 425-574 (829)
208 PF05843 Suf: Suppressor of fo 97.1 0.0041 8.9E-08 58.6 10.4 129 519-649 2-136 (280)
209 PF12688 TPR_5: Tetratrico pep 97.1 0.012 2.6E-07 46.6 11.2 89 489-580 7-101 (120)
210 PF06239 ECSIT: Evolutionarily 97.1 0.0042 9E-08 53.6 9.1 105 107-226 44-153 (228)
211 COG5107 RNA14 Pre-mRNA 3'-end 97.0 0.37 8E-06 46.5 30.0 89 31-122 30-121 (660)
212 PF13525 YfiO: Outer membrane 97.0 0.026 5.5E-07 50.4 13.6 150 491-640 13-198 (203)
213 PF09205 DUF1955: Domain of un 97.0 0.062 1.4E-06 42.1 13.3 141 493-652 12-152 (161)
214 PF13512 TPR_18: Tetratricopep 96.9 0.015 3.3E-07 46.9 10.6 90 559-648 15-127 (142)
215 KOG2280 Vacuolar assembly/sort 96.9 0.62 1.3E-05 48.2 29.7 325 282-645 441-795 (829)
216 PF03704 BTAD: Bacterial trans 96.9 0.0029 6.4E-08 53.1 7.0 68 588-655 64-136 (146)
217 PRK11619 lytic murein transgly 96.9 0.81 1.8E-05 48.6 29.4 113 497-612 255-372 (644)
218 PRK11906 transcriptional regul 96.9 0.015 3.3E-07 56.6 11.9 154 487-643 257-430 (458)
219 COG4235 Cytochrome c biogenesi 96.9 0.03 6.5E-07 51.1 13.1 109 515-627 152-267 (287)
220 PF13281 DUF4071: Domain of un 96.9 0.12 2.6E-06 49.8 17.7 160 457-619 146-338 (374)
221 KOG2796 Uncharacterized conser 96.8 0.12 2.5E-06 46.0 15.6 130 522-652 181-318 (366)
222 PRK10866 outer membrane biogen 96.8 0.27 5.9E-06 45.1 18.8 21 389-409 41-61 (243)
223 KOG0550 Molecular chaperone (D 96.7 0.6 1.3E-05 44.7 21.4 84 462-547 259-350 (486)
224 KOG4555 TPR repeat-containing 96.7 0.014 3.1E-07 45.4 8.1 88 563-650 52-145 (175)
225 KOG1538 Uncharacterized conser 96.7 0.093 2E-06 52.7 15.6 208 383-614 601-845 (1081)
226 KOG1130 Predicted G-alpha GTPa 96.6 0.0073 1.6E-07 56.8 7.6 129 485-614 197-343 (639)
227 PF13424 TPR_12: Tetratricopep 96.5 0.0034 7.3E-08 45.9 3.7 61 555-615 6-75 (78)
228 KOG1585 Protein required for f 96.4 0.55 1.2E-05 41.5 16.9 88 555-643 151-250 (308)
229 COG1729 Uncharacterized protei 96.4 0.019 4.2E-07 51.6 8.6 102 520-622 144-251 (262)
230 KOG0543 FKBP-type peptidyl-pro 96.3 0.017 3.7E-07 54.8 7.8 66 586-651 257-322 (397)
231 COG3118 Thioredoxin domain-con 96.3 0.31 6.8E-06 44.6 15.2 117 527-647 143-263 (304)
232 PF13525 YfiO: Outer membrane 96.2 0.12 2.5E-06 46.2 12.8 127 523-649 10-170 (203)
233 PF12921 ATP13: Mitochondrial 96.1 0.062 1.3E-06 43.1 9.4 50 514-563 48-97 (126)
234 KOG1538 Uncharacterized conser 96.1 0.73 1.6E-05 46.7 18.0 90 177-272 557-657 (1081)
235 COG4785 NlpI Lipoprotein NlpI, 96.1 0.51 1.1E-05 40.9 14.7 176 465-649 78-266 (297)
236 PLN03098 LPA1 LOW PSII ACCUMUL 96.0 0.04 8.7E-07 53.7 9.2 59 520-581 77-139 (453)
237 COG1729 Uncharacterized protei 96.0 0.06 1.3E-06 48.6 9.4 84 496-581 154-242 (262)
238 PF07719 TPR_2: Tetratricopept 95.8 0.025 5.5E-07 33.0 4.6 32 588-619 3-34 (34)
239 PF00515 TPR_1: Tetratricopept 95.8 0.019 4.1E-07 33.6 3.9 32 587-618 2-33 (34)
240 KOG3941 Intermediate in Toll s 95.8 0.042 9E-07 49.2 7.5 112 62-173 52-187 (406)
241 COG3118 Thioredoxin domain-con 95.8 0.73 1.6E-05 42.3 15.3 153 491-646 142-299 (304)
242 COG4105 ComL DNA uptake lipopr 95.8 1.1 2.3E-05 40.4 16.1 56 592-647 173-231 (254)
243 PF10300 DUF3808: Protein of u 95.7 0.68 1.5E-05 47.4 17.0 160 486-648 191-375 (468)
244 PF03704 BTAD: Bacterial trans 95.7 0.099 2.1E-06 43.8 9.4 70 486-557 65-139 (146)
245 PRK11906 transcriptional regul 95.6 0.54 1.2E-05 46.3 14.9 145 467-616 273-437 (458)
246 PF04184 ST7: ST7 protein; In 95.6 1.4 3E-05 43.7 17.2 17 604-620 364-380 (539)
247 PRK15331 chaperone protein Sic 95.5 0.28 6E-06 40.9 10.7 93 489-585 43-136 (165)
248 KOG2114 Vacuolar assembly/sort 95.4 4.3 9.3E-05 43.0 26.0 63 457-519 710-776 (933)
249 KOG4555 TPR repeat-containing 95.4 0.055 1.2E-06 42.3 6.0 57 593-649 50-106 (175)
250 KOG1941 Acetylcholine receptor 95.3 0.23 5E-06 46.4 10.6 162 485-646 85-272 (518)
251 COG2976 Uncharacterized protei 95.2 0.17 3.6E-06 43.1 8.7 86 527-616 98-189 (207)
252 PF13512 TPR_18: Tetratricopep 95.2 0.44 9.4E-06 38.7 10.7 112 493-621 20-134 (142)
253 KOG1920 IkappaB kinase complex 95.2 3.8 8.3E-05 45.2 20.4 117 455-584 911-1029(1265)
254 PF13281 DUF4071: Domain of un 95.1 3.6 7.7E-05 40.0 20.3 163 486-649 144-334 (374)
255 COG2976 Uncharacterized protei 95.0 1.4 3.1E-05 37.7 13.6 90 560-650 95-189 (207)
256 PF04053 Coatomer_WDAD: Coatom 95.0 0.5 1.1E-05 47.5 13.1 154 461-644 270-426 (443)
257 smart00299 CLH Clathrin heavy 94.9 1.4 3.1E-05 36.5 13.9 125 487-631 11-136 (140)
258 COG0457 NrfG FOG: TPR repeat [ 94.9 3 6.4E-05 38.1 25.1 192 453-648 60-264 (291)
259 KOG2610 Uncharacterized conser 94.9 0.29 6.2E-06 45.3 9.9 159 495-656 115-283 (491)
260 KOG2610 Uncharacterized conser 94.7 1.1 2.5E-05 41.6 13.2 156 464-622 115-285 (491)
261 PF13176 TPR_7: Tetratricopept 94.7 0.058 1.3E-06 32.0 3.6 26 622-647 1-26 (36)
262 PF12921 ATP13: Mitochondrial 94.7 0.33 7.2E-06 38.9 8.9 78 519-596 3-98 (126)
263 KOG1920 IkappaB kinase complex 94.5 10 0.00022 42.2 27.1 92 460-581 960-1053(1265)
264 PF04053 Coatomer_WDAD: Coatom 94.4 1.4 3.1E-05 44.4 14.6 103 461-581 327-429 (443)
265 PF04184 ST7: ST7 protein; In 94.3 1.9 4E-05 42.8 14.4 71 554-624 259-334 (539)
266 PF09613 HrpB1_HrpK: Bacterial 94.3 1.4 3E-05 36.7 11.7 109 528-641 20-130 (160)
267 PF13181 TPR_8: Tetratricopept 94.3 0.09 2E-06 30.6 3.8 31 588-618 3-33 (34)
268 PF13428 TPR_14: Tetratricopep 94.2 0.086 1.9E-06 33.1 3.8 33 620-652 1-33 (44)
269 smart00299 CLH Clathrin heavy 94.2 2.7 5.8E-05 34.7 14.1 43 115-158 12-54 (140)
270 PF02259 FAT: FAT domain; Int 94.2 5.4 0.00012 39.3 18.8 150 481-633 144-305 (352)
271 COG3629 DnrI DNA-binding trans 94.2 0.25 5.4E-06 45.5 8.1 60 555-614 154-215 (280)
272 KOG1258 mRNA processing protei 94.2 7.6 0.00016 39.7 30.9 180 450-634 295-489 (577)
273 KOG4234 TPR repeat-containing 94.1 0.28 6.1E-06 41.8 7.6 103 525-629 102-211 (271)
274 KOG2066 Vacuolar assembly/sort 94.1 9.1 0.0002 40.4 21.5 30 568-600 675-704 (846)
275 COG4105 ComL DNA uptake lipopr 94.1 3.5 7.5E-05 37.3 14.6 139 492-654 43-200 (254)
276 PF11207 DUF2989: Protein of u 94.1 0.99 2.1E-05 39.1 10.9 76 564-640 117-198 (203)
277 COG0457 NrfG FOG: TPR repeat [ 94.0 4.6 0.0001 36.7 21.0 166 483-651 59-233 (291)
278 PF10345 Cohesin_load: Cohesin 94.0 10 0.00022 40.7 30.0 51 391-441 372-428 (608)
279 PF10300 DUF3808: Protein of u 93.9 0.98 2.1E-05 46.2 12.7 128 485-614 231-375 (468)
280 PF13176 TPR_7: Tetratricopept 93.7 0.12 2.5E-06 30.7 3.5 27 588-614 1-27 (36)
281 PF07719 TPR_2: Tetratricopept 93.6 0.11 2.4E-06 30.2 3.3 31 620-650 1-31 (34)
282 KOG4234 TPR repeat-containing 93.4 1.1 2.3E-05 38.4 9.6 90 490-584 102-199 (271)
283 KOG3941 Intermediate in Toll s 93.3 1 2.2E-05 40.8 10.0 98 472-570 54-174 (406)
284 PRK11619 lytic murein transgly 93.0 15 0.00032 39.4 39.0 93 561-653 414-509 (644)
285 PF00515 TPR_1: Tetratricopept 92.9 0.16 3.5E-06 29.5 3.2 30 621-650 2-31 (34)
286 PF10345 Cohesin_load: Cohesin 92.8 16 0.00035 39.2 32.9 49 599-647 547-604 (608)
287 PF09205 DUF1955: Domain of un 92.7 4.3 9.3E-05 32.3 12.7 66 279-345 87-152 (161)
288 COG2909 MalT ATP-dependent tra 92.5 18 0.00038 39.1 20.6 27 625-651 623-649 (894)
289 COG5107 RNA14 Pre-mRNA 3'-end 92.5 12 0.00025 36.9 33.4 124 521-646 400-528 (660)
290 COG4649 Uncharacterized protei 92.4 3.4 7.4E-05 34.6 11.0 128 483-614 59-195 (221)
291 PF09613 HrpB1_HrpK: Bacterial 92.0 1.1 2.3E-05 37.3 7.9 81 555-635 8-93 (160)
292 TIGR02561 HrpB1_HrpK type III 92.0 0.98 2.1E-05 36.8 7.5 70 566-635 22-93 (153)
293 KOG2114 Vacuolar assembly/sort 92.0 20 0.00043 38.4 28.9 81 186-274 378-458 (933)
294 KOG4648 Uncharacterized conser 91.9 0.5 1.1E-05 43.8 6.5 91 527-620 106-199 (536)
295 PF07035 Mic1: Colon cancer-as 91.9 5.7 0.00012 33.6 12.1 136 196-343 14-150 (167)
296 PF08631 SPO22: Meiosis protei 91.7 12 0.00026 35.3 23.1 18 596-613 256-273 (278)
297 PF13170 DUF4003: Protein of u 91.6 4.2 9.1E-05 38.5 12.5 94 468-564 119-227 (297)
298 COG4649 Uncharacterized protei 91.3 7.9 0.00017 32.6 15.4 117 463-580 69-193 (221)
299 PF13174 TPR_6: Tetratricopept 91.3 0.43 9.4E-06 27.3 3.8 27 592-618 6-32 (33)
300 PF06552 TOM20_plant: Plant sp 91.3 0.31 6.8E-06 41.0 4.2 27 605-631 54-80 (186)
301 KOG1586 Protein required for f 91.3 1.9 4.2E-05 38.0 8.9 111 528-648 24-142 (288)
302 KOG1941 Acetylcholine receptor 91.3 0.82 1.8E-05 42.9 7.2 181 466-648 20-234 (518)
303 COG4785 NlpI Lipoprotein NlpI, 91.1 1.7 3.7E-05 37.8 8.3 87 531-620 78-167 (297)
304 KOG4570 Uncharacterized conser 91.0 0.87 1.9E-05 41.9 6.9 102 38-140 58-165 (418)
305 PF07721 TPR_4: Tetratricopept 91.0 0.28 6E-06 26.5 2.5 24 621-644 2-25 (26)
306 PF02259 FAT: FAT domain; Int 91.0 8.3 0.00018 38.0 15.0 65 585-649 145-213 (352)
307 PF10602 RPN7: 26S proteasome 90.9 2.6 5.6E-05 36.4 9.7 95 485-581 38-140 (177)
308 PF13181 TPR_8: Tetratricopept 90.8 0.45 9.7E-06 27.5 3.6 29 621-649 2-30 (34)
309 TIGR02561 HrpB1_HrpK type III 90.7 6.6 0.00014 32.2 10.8 52 530-584 22-74 (153)
310 PF13374 TPR_10: Tetratricopep 90.3 0.4 8.7E-06 29.4 3.2 29 621-649 3-31 (42)
311 COG3947 Response regulator con 90.3 15 0.00032 33.9 15.0 57 591-647 284-340 (361)
312 PF13174 TPR_6: Tetratricopept 90.2 0.35 7.6E-06 27.7 2.7 28 622-649 2-29 (33)
313 PF13170 DUF4003: Protein of u 89.9 3.8 8.2E-05 38.8 10.5 125 91-217 78-223 (297)
314 KOG1586 Protein required for f 89.7 14 0.00031 32.9 14.0 91 532-622 128-231 (288)
315 PF07035 Mic1: Colon cancer-as 89.3 12 0.00027 31.6 15.4 42 232-274 15-56 (167)
316 COG1747 Uncharacterized N-term 89.3 26 0.00056 35.3 20.4 177 449-632 63-251 (711)
317 KOG4570 Uncharacterized conser 89.2 4 8.7E-05 37.8 9.5 101 140-241 59-165 (418)
318 KOG4648 Uncharacterized conser 89.1 0.96 2.1E-05 42.1 5.7 88 561-648 104-193 (536)
319 PRK09687 putative lyase; Provi 88.9 21 0.00045 33.7 25.3 137 481-630 140-277 (280)
320 PF14561 TPR_20: Tetratricopep 88.9 1.2 2.7E-05 33.2 5.3 52 585-636 21-74 (90)
321 PF00637 Clathrin: Region in C 88.9 0.7 1.5E-05 38.5 4.6 79 49-134 12-94 (143)
322 KOG1258 mRNA processing protei 88.9 31 0.00066 35.5 29.2 129 74-205 44-180 (577)
323 KOG0276 Vesicle coat complex C 88.8 8.5 0.00018 39.3 12.2 101 463-581 648-748 (794)
324 PF13374 TPR_10: Tetratricopep 88.4 1.1 2.4E-05 27.4 4.2 28 587-614 3-30 (42)
325 COG3629 DnrI DNA-binding trans 88.2 4.3 9.4E-05 37.6 9.3 78 485-563 155-236 (280)
326 KOG4507 Uncharacterized conser 88.0 1.6 3.4E-05 44.0 6.7 101 528-631 617-721 (886)
327 KOG1585 Protein required for f 87.8 8.1 0.00017 34.6 10.1 54 593-646 157-216 (308)
328 PF13431 TPR_17: Tetratricopep 87.7 0.76 1.7E-05 26.7 2.9 31 235-267 3-33 (34)
329 PF14853 Fis1_TPR_C: Fis1 C-te 87.5 1.6 3.5E-05 28.5 4.5 33 591-623 6-38 (53)
330 PRK09687 putative lyase; Provi 87.4 26 0.00057 33.1 24.8 23 488-511 240-262 (280)
331 PRK10941 hypothetical protein; 87.2 3.7 8E-05 38.2 8.4 62 590-651 185-246 (269)
332 KOG0890 Protein kinase of the 87.1 83 0.0018 38.6 29.1 67 585-653 1669-1735(2382)
333 KOG4642 Chaperone-dependent E3 87.0 2.6 5.7E-05 37.4 6.8 83 528-613 20-105 (284)
334 smart00028 TPR Tetratricopepti 86.8 1.4 3E-05 24.5 3.8 24 623-646 4-27 (34)
335 KOG1464 COP9 signalosome, subu 86.4 8.5 0.00018 34.8 9.7 121 532-652 41-177 (440)
336 PF10602 RPN7: 26S proteasome 86.0 7.8 0.00017 33.5 9.4 93 520-613 38-140 (177)
337 KOG1308 Hsp70-interacting prot 85.7 0.56 1.2E-05 43.8 2.3 85 530-617 126-213 (377)
338 PF08631 SPO22: Meiosis protei 85.1 35 0.00075 32.3 22.1 17 389-405 255-271 (278)
339 COG0790 FOG: TPR repeat, SEL1 84.9 37 0.00079 32.4 15.2 116 533-652 128-269 (292)
340 TIGR03504 FimV_Cterm FimV C-te 84.5 1.9 4E-05 26.9 3.5 27 624-650 3-29 (44)
341 PF00637 Clathrin: Region in C 83.9 0.77 1.7E-05 38.2 2.3 86 115-203 12-97 (143)
342 KOG1550 Extracellular protein 83.3 60 0.0013 34.4 16.2 152 493-653 259-430 (552)
343 PF02284 COX5A: Cytochrome c o 83.0 6.5 0.00014 29.7 6.3 60 501-562 28-87 (108)
344 smart00028 TPR Tetratricopepti 83.0 2 4.4E-05 23.7 3.3 32 587-618 2-33 (34)
345 PF09986 DUF2225: Uncharacteri 83.0 6.4 0.00014 35.3 7.7 66 588-653 120-198 (214)
346 cd00923 Cyt_c_Oxidase_Va Cytoc 82.9 8.3 0.00018 28.8 6.7 47 194-240 25-71 (103)
347 PF07721 TPR_4: Tetratricopept 82.4 2.8 6E-05 22.5 3.3 21 558-578 5-25 (26)
348 cd00923 Cyt_c_Oxidase_Va Cytoc 81.9 8.6 0.00019 28.7 6.5 59 501-561 25-83 (103)
349 KOG0551 Hsp90 co-chaperone CNS 81.9 8.4 0.00018 36.2 8.0 91 555-645 82-178 (390)
350 TIGR02508 type_III_yscG type I 81.6 20 0.00044 27.0 8.3 87 125-215 20-106 (115)
351 KOG3364 Membrane protein invol 81.3 13 0.00028 29.9 7.7 71 551-621 29-106 (149)
352 COG4455 ImpE Protein of avirul 81.2 6.3 0.00014 34.5 6.6 73 556-628 3-80 (273)
353 smart00386 HAT HAT (Half-A-TPR 80.9 3.5 7.7E-05 23.2 3.8 30 600-629 1-30 (33)
354 KOG2066 Vacuolar assembly/sort 80.8 86 0.0019 33.7 26.2 29 456-484 509-537 (846)
355 PRK15180 Vi polysaccharide bio 80.3 13 0.00028 36.8 8.9 129 493-625 299-430 (831)
356 PF02284 COX5A: Cytochrome c o 80.1 8.6 0.00019 29.1 6.0 47 194-240 28-74 (108)
357 KOG4507 Uncharacterized conser 79.7 9.3 0.0002 38.8 8.0 131 516-649 569-705 (886)
358 KOG1464 COP9 signalosome, subu 79.5 50 0.0011 30.2 15.4 218 383-609 68-326 (440)
359 COG4455 ImpE Protein of avirul 78.8 47 0.001 29.5 12.0 72 487-563 5-81 (273)
360 PF12862 Apc5: Anaphase-promot 77.9 7.1 0.00015 29.5 5.5 54 596-649 8-70 (94)
361 KOG0545 Aryl-hydrocarbon recep 77.8 19 0.00041 32.3 8.5 104 521-624 181-302 (329)
362 PF04190 DUF410: Protein of un 77.8 61 0.0013 30.2 17.6 91 287-377 19-118 (260)
363 COG0790 FOG: TPR repeat, SEL1 77.6 67 0.0014 30.6 14.3 116 530-651 89-222 (292)
364 PF13762 MNE1: Mitochondrial s 76.7 41 0.00089 27.7 10.1 82 77-158 41-128 (145)
365 PRK10941 hypothetical protein; 76.7 11 0.00025 35.0 7.4 68 557-624 184-253 (269)
366 COG5159 RPN6 26S proteasome re 75.9 67 0.0014 29.8 12.2 158 490-647 10-192 (421)
367 PF12968 DUF3856: Domain of Un 75.7 37 0.0008 26.7 8.6 62 585-646 54-126 (144)
368 PF13929 mRNA_stabil: mRNA sta 75.5 41 0.00089 31.4 10.3 120 78-200 134-262 (292)
369 PF10579 Rapsyn_N: Rapsyn N-te 75.2 5 0.00011 28.6 3.6 47 530-576 18-65 (80)
370 PF10579 Rapsyn_N: Rapsyn N-te 75.1 6.1 0.00013 28.2 3.9 46 598-643 18-66 (80)
371 PRK15180 Vi polysaccharide bio 74.4 17 0.00038 35.9 8.1 137 460-601 297-442 (831)
372 KOG2063 Vacuolar assembly/sort 74.3 1.3E+02 0.0028 33.5 15.3 112 46-157 506-638 (877)
373 PF06552 TOM20_plant: Plant sp 74.2 38 0.00082 29.0 9.0 44 601-651 95-138 (186)
374 COG4976 Predicted methyltransf 74.0 6.1 0.00013 34.9 4.5 55 565-619 6-62 (287)
375 PF14561 TPR_20: Tetratricopep 73.6 32 0.0007 25.7 7.8 43 606-648 8-50 (90)
376 KOG0991 Replication factor C, 73.3 70 0.0015 28.8 11.5 48 471-519 227-274 (333)
377 KOG1498 26S proteasome regulat 73.3 96 0.0021 30.3 12.5 181 447-654 47-246 (439)
378 TIGR03504 FimV_Cterm FimV C-te 73.2 8.5 0.00019 24.0 3.9 25 489-513 5-29 (44)
379 COG2909 MalT ATP-dependent tra 72.9 1.5E+02 0.0033 32.5 24.2 182 464-645 470-684 (894)
380 COG4941 Predicted RNA polymera 72.4 92 0.002 29.7 11.8 122 498-624 271-403 (415)
381 TIGR02508 type_III_yscG type I 72.3 40 0.00087 25.5 8.7 78 227-308 21-98 (115)
382 cd00280 TRFH Telomeric Repeat 71.4 24 0.00052 30.2 7.2 47 595-642 120-166 (200)
383 PF11207 DUF2989: Protein of u 71.2 31 0.00068 30.2 8.1 74 500-574 123-198 (203)
384 KOG2471 TPR repeat-containing 71.0 1.1E+02 0.0024 30.9 12.5 105 528-633 250-382 (696)
385 KOG1550 Extracellular protein 70.4 1.5E+02 0.0033 31.4 19.9 148 497-650 378-539 (552)
386 PRK12798 chemotaxis protein; R 69.8 1.2E+02 0.0026 30.1 20.9 179 465-646 125-321 (421)
387 PHA02537 M terminase endonucle 68.3 93 0.002 28.2 11.4 106 493-618 93-210 (230)
388 PF13762 MNE1: Mitochondrial s 68.3 29 0.00063 28.6 7.0 82 45-126 40-131 (145)
389 KOG0276 Vesicle coat complex C 67.3 57 0.0012 33.7 10.1 76 257-343 647-722 (794)
390 PHA02875 ankyrin repeat protei 66.1 1.5E+02 0.0034 29.9 16.0 19 152-170 72-90 (413)
391 PF07163 Pex26: Pex26 protein; 65.2 62 0.0013 30.0 9.0 83 459-541 90-181 (309)
392 KOG0376 Serine-threonine phosp 65.1 4.9 0.00011 39.8 2.5 99 525-626 11-112 (476)
393 KOG2063 Vacuolar assembly/sort 64.4 2.4E+02 0.0052 31.5 17.9 127 383-528 507-636 (877)
394 PF04097 Nic96: Nup93/Nic96; 63.4 2.1E+02 0.0046 30.8 14.4 278 354-648 116-442 (613)
395 PF10366 Vps39_1: Vacuolar sor 63.2 70 0.0015 24.9 8.3 75 558-658 3-77 (108)
396 PF11846 DUF3366: Domain of un 62.4 30 0.00066 30.5 6.9 33 585-617 143-175 (193)
397 PF09670 Cas_Cas02710: CRISPR- 62.2 1.1E+02 0.0025 30.4 11.4 52 494-546 142-197 (379)
398 PF09477 Type_III_YscG: Bacter 62.0 72 0.0016 24.6 8.6 80 225-308 20-99 (116)
399 PF04090 RNA_pol_I_TF: RNA pol 61.5 1.2E+02 0.0025 26.8 10.3 29 484-512 42-70 (199)
400 KOG4642 Chaperone-dependent E3 61.0 1.3E+02 0.0028 27.3 10.1 114 493-611 20-142 (284)
401 PF07720 TPR_3: Tetratricopept 60.4 33 0.00072 20.3 4.5 20 623-642 4-23 (36)
402 KOG4077 Cytochrome c oxidase, 60.0 60 0.0013 25.8 6.9 46 195-240 68-113 (149)
403 PF14853 Fis1_TPR_C: Fis1 C-te 60.0 30 0.00065 22.7 4.6 33 489-523 7-39 (53)
404 PRK13342 recombination factor 60.0 2E+02 0.0044 29.1 14.0 111 92-220 154-274 (413)
405 PF07163 Pex26: Pex26 protein; 59.3 60 0.0013 30.1 7.9 75 82-156 90-164 (309)
406 COG4976 Predicted methyltransf 59.1 18 0.00038 32.2 4.4 51 528-581 5-56 (287)
407 KOG0376 Serine-threonine phosp 59.0 21 0.00045 35.6 5.4 104 490-598 11-117 (476)
408 PRK13800 putative oxidoreducta 58.4 3.3E+02 0.0072 31.1 22.5 257 62-341 622-880 (897)
409 PF08311 Mad3_BUB1_I: Mad3/BUB 58.4 89 0.0019 25.2 8.2 42 604-645 81-124 (126)
410 PF10516 SHNi-TPR: SHNi-TPR; 58.3 23 0.00049 21.3 3.6 28 621-648 2-29 (38)
411 COG3947 Response regulator con 57.8 43 0.00093 31.1 6.7 58 557-614 282-341 (361)
412 PRK13800 putative oxidoreducta 56.6 3.5E+02 0.0077 30.9 25.7 158 476-647 721-879 (897)
413 PHA02875 ankyrin repeat protei 56.2 2.2E+02 0.0047 28.8 12.8 73 23-98 12-88 (413)
414 KOG4521 Nuclear pore complex, 55.5 3E+02 0.0065 31.5 13.4 120 521-642 986-1124(1480)
415 cd08819 CARD_MDA5_2 Caspase ac 55.1 75 0.0016 23.5 6.3 36 259-295 48-83 (88)
416 PF14689 SPOB_a: Sensor_kinase 55.1 19 0.00042 24.5 3.3 30 517-546 22-51 (62)
417 KOG0403 Neoplastic transformat 54.8 2.4E+02 0.0051 28.3 13.2 56 458-513 515-573 (645)
418 KOG4077 Cytochrome c oxidase, 54.8 71 0.0015 25.4 6.5 58 502-561 68-125 (149)
419 KOG4814 Uncharacterized conser 54.8 37 0.00079 35.3 6.4 61 592-652 400-460 (872)
420 PF11846 DUF3366: Domain of un 54.3 40 0.00087 29.7 6.2 57 525-581 115-171 (193)
421 KOG3364 Membrane protein invol 54.2 67 0.0014 26.1 6.4 68 583-650 29-101 (149)
422 PF09477 Type_III_YscG: Bacter 54.0 1E+02 0.0022 23.9 8.9 81 123-206 19-99 (116)
423 COG2912 Uncharacterized conser 53.8 55 0.0012 30.2 6.9 55 594-648 189-243 (269)
424 KOG3824 Huntingtin interacting 53.7 31 0.00068 32.1 5.3 59 566-624 128-188 (472)
425 KOG4279 Serine/threonine prote 53.3 2.9E+02 0.0064 29.8 12.4 181 383-619 204-399 (1226)
426 PF13934 ELYS: Nuclear pore co 53.0 1.6E+02 0.0034 26.8 9.8 105 486-599 79-185 (226)
427 PF14863 Alkyl_sulf_dimr: Alky 52.7 64 0.0014 26.6 6.5 65 571-638 58-122 (141)
428 KOG0530 Protein farnesyltransf 52.5 1.9E+02 0.0042 26.7 11.3 72 585-656 111-183 (318)
429 PF11663 Toxin_YhaV: Toxin wit 52.4 19 0.00042 28.9 3.3 32 87-120 107-138 (140)
430 PF11663 Toxin_YhaV: Toxin wit 52.2 19 0.00042 28.9 3.3 33 494-528 106-138 (140)
431 PF08424 NRDE-2: NRDE-2, neces 52.1 2.3E+02 0.005 27.5 12.6 75 499-578 47-126 (321)
432 PF04910 Tcf25: Transcriptiona 51.7 2.5E+02 0.0055 27.8 13.8 54 594-647 111-166 (360)
433 PF11848 DUF3368: Domain of un 51.3 52 0.0011 21.0 4.7 34 288-321 12-45 (48)
434 cd08819 CARD_MDA5_2 Caspase ac 51.3 93 0.002 23.0 6.3 38 361-399 48-85 (88)
435 COG0735 Fur Fe2+/Zn2+ uptake r 50.3 63 0.0014 26.9 6.3 65 96-161 7-71 (145)
436 KOG4567 GTPase-activating prot 50.2 1.6E+02 0.0035 27.8 9.1 77 298-380 263-349 (370)
437 PF11838 ERAP1_C: ERAP1-like C 50.1 2.5E+02 0.0053 27.2 14.4 186 51-236 45-262 (324)
438 cd00280 TRFH Telomeric Repeat 49.9 79 0.0017 27.2 6.6 24 563-586 120-143 (200)
439 COG5191 Uncharacterized conser 49.5 33 0.00071 32.1 4.8 77 551-627 104-183 (435)
440 PF11848 DUF3368: Domain of un 48.7 69 0.0015 20.4 5.2 33 494-526 13-45 (48)
441 KOG2758 Translation initiation 46.5 2.7E+02 0.0058 26.6 13.0 164 439-614 22-195 (432)
442 PF07575 Nucleopor_Nup85: Nup8 46.3 4E+02 0.0086 28.5 20.0 75 264-340 391-465 (566)
443 PF14689 SPOB_a: Sensor_kinase 46.1 28 0.00061 23.7 3.0 44 534-580 6-49 (62)
444 PRK10564 maltose regulon perip 44.9 40 0.00088 31.6 4.7 38 178-215 259-296 (303)
445 PRK10564 maltose regulon perip 44.6 45 0.00097 31.3 4.9 42 382-423 259-300 (303)
446 KOG2659 LisH motif-containing 43.8 1.6E+02 0.0035 26.5 7.9 91 486-579 29-128 (228)
447 KOG0545 Aryl-hydrocarbon recep 43.3 2.6E+02 0.0057 25.6 11.8 59 523-584 235-295 (329)
448 KOG2581 26S proteasome regulat 43.3 1.8E+02 0.0038 28.8 8.6 134 517-651 125-278 (493)
449 PF08311 Mad3_BUB1_I: Mad3/BUB 43.0 1.8E+02 0.0038 23.5 8.3 43 331-373 81-123 (126)
450 PF12862 Apc5: Anaphase-promot 42.9 78 0.0017 23.8 5.4 26 591-616 46-71 (94)
451 PRK13342 recombination factor 42.5 3.8E+02 0.0082 27.2 15.5 42 383-424 230-274 (413)
452 COG5159 RPN6 26S proteasome re 41.8 3E+02 0.0065 25.8 17.9 90 457-546 130-234 (421)
453 KOG2062 26S proteasome regulat 41.7 4.9E+02 0.011 28.3 29.4 499 78-660 134-702 (929)
454 PRK09857 putative transposase; 41.0 1.4E+02 0.0031 28.4 7.9 64 591-654 211-274 (292)
455 PF13929 mRNA_stabil: mRNA sta 40.8 3.2E+02 0.0069 25.8 14.2 62 308-370 197-259 (292)
456 PF04781 DUF627: Protein of un 40.4 1.6E+02 0.0035 23.0 6.6 40 604-643 62-101 (111)
457 PF10255 Paf67: RNA polymerase 40.4 1.4E+02 0.003 29.8 7.9 95 553-647 74-191 (404)
458 PF04910 Tcf25: Transcriptiona 39.8 3.9E+02 0.0084 26.5 16.2 55 491-545 111-166 (360)
459 PF00244 14-3-3: 14-3-3 protei 39.6 3E+02 0.0066 25.2 10.6 163 488-651 6-200 (236)
460 KOG1839 Uncharacterized protei 39.1 1.7E+02 0.0036 33.8 9.0 121 526-648 940-1085(1236)
461 COG0735 Fur Fe2+/Zn2+ uptake r 38.4 1.4E+02 0.0031 24.8 6.6 62 63-124 8-69 (145)
462 PRK11639 zinc uptake transcrip 38.4 1.4E+02 0.0031 25.6 6.9 59 102-161 18-76 (169)
463 PF13934 ELYS: Nuclear pore co 37.8 3.2E+02 0.0068 24.9 12.7 97 463-568 89-186 (226)
464 TIGR02710 CRISPR-associated pr 37.6 4.3E+02 0.0092 26.3 10.7 53 491-543 138-196 (380)
465 PRK12798 chemotaxis protein; R 37.5 4.4E+02 0.0095 26.4 18.5 187 458-650 87-287 (421)
466 COG4259 Uncharacterized protei 37.2 1.4E+02 0.0031 22.6 5.5 34 591-624 77-110 (121)
467 KOG4567 GTPase-activating prot 37.2 2.8E+02 0.006 26.4 8.5 69 131-200 264-342 (370)
468 KOG0687 26S proteasome regulat 37.2 3.9E+02 0.0084 25.7 13.4 37 280-316 106-146 (393)
469 COG5187 RPN7 26S proteasome re 37.0 3.6E+02 0.0078 25.3 12.6 97 483-580 115-218 (412)
470 KOG0890 Protein kinase of the 36.9 9.9E+02 0.021 30.4 33.1 108 519-630 1671-1799(2382)
471 PF11817 Foie-gras_1: Foie gra 36.5 1.9E+02 0.0041 26.7 7.9 49 594-642 186-240 (247)
472 KOG3824 Huntingtin interacting 35.6 54 0.0012 30.6 3.9 54 528-584 126-181 (472)
473 PHA03100 ankyrin repeat protei 35.3 5.2E+02 0.011 26.7 12.7 241 15-274 37-307 (480)
474 KOG2908 26S proteasome regulat 35.3 4.2E+02 0.0092 25.6 9.7 18 529-546 126-143 (380)
475 PF11768 DUF3312: Protein of u 35.0 4E+02 0.0087 27.8 10.1 23 457-479 413-435 (545)
476 KOG0292 Vesicle coat complex C 34.9 39 0.00085 36.6 3.4 43 566-611 655-697 (1202)
477 cd07153 Fur_like Ferric uptake 34.5 87 0.0019 24.6 4.7 46 81-126 6-51 (116)
478 COG1747 Uncharacterized N-term 34.3 5.4E+02 0.012 26.6 23.4 92 277-374 65-156 (711)
479 COG5187 RPN7 26S proteasome re 33.9 4.1E+02 0.0088 25.0 9.3 66 348-413 114-188 (412)
480 KOG0292 Vesicle coat complex C 33.6 6.7E+02 0.015 28.0 11.7 130 461-614 652-781 (1202)
481 PF09986 DUF2225: Uncharacteri 33.6 3.6E+02 0.0078 24.3 10.3 25 592-616 171-195 (214)
482 KOG0991 Replication factor C, 33.3 3.8E+02 0.0082 24.4 13.5 52 368-420 227-278 (333)
483 PF04190 DUF410: Protein of un 33.1 4.1E+02 0.0089 24.8 16.8 144 388-547 18-170 (260)
484 smart00777 Mad3_BUB1_I Mad3/BU 33.0 2E+02 0.0043 23.2 6.3 40 538-578 83-123 (125)
485 PF04090 RNA_pol_I_TF: RNA pol 32.9 2.3E+02 0.005 25.0 7.2 59 588-646 43-102 (199)
486 KOG0128 RNA-binding protein SA 32.7 7.2E+02 0.016 27.5 31.7 107 535-642 443-556 (881)
487 PF11817 Foie-gras_1: Foie gra 32.1 1.1E+02 0.0023 28.4 5.6 20 526-545 186-205 (247)
488 KOG1308 Hsp70-interacting prot 32.1 65 0.0014 30.8 3.9 82 495-581 126-209 (377)
489 PRK11639 zinc uptake transcrip 32.0 1.9E+02 0.0042 24.7 6.7 68 60-127 10-77 (169)
490 PF12926 MOZART2: Mitotic-spin 31.8 90 0.002 22.9 3.7 41 31-71 29-70 (88)
491 PF09454 Vps23_core: Vps23 cor 31.7 69 0.0015 22.1 3.1 50 72-122 5-54 (65)
492 COG5191 Uncharacterized conser 31.6 74 0.0016 29.9 4.1 73 583-659 104-177 (435)
493 PF12796 Ank_2: Ankyrin repeat 31.2 1.5E+02 0.0032 21.6 5.4 14 55-68 5-18 (89)
494 PF00244 14-3-3: 14-3-3 protei 31.0 3.1E+02 0.0066 25.2 8.2 58 81-138 7-65 (236)
495 PF06957 COPI_C: Coatomer (COP 30.1 3E+02 0.0065 27.8 8.3 109 493-619 214-333 (422)
496 PF07064 RIC1: RIC1; InterPro 29.9 4.6E+02 0.01 24.4 14.2 156 77-241 84-250 (258)
497 KOG2422 Uncharacterized conser 29.7 6.8E+02 0.015 26.3 12.9 53 492-544 351-404 (665)
498 KOG0403 Neoplastic transformat 29.0 6.2E+02 0.013 25.6 17.7 59 353-411 513-574 (645)
499 KOG1524 WD40 repeat-containing 28.8 2.7E+02 0.0058 28.6 7.6 51 520-577 575-625 (737)
500 PRK09462 fur ferric uptake reg 28.8 2.2E+02 0.0047 23.7 6.4 61 100-161 7-68 (148)
No 1
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=8e-99 Score=823.01 Aligned_cols=659 Identities=28% Similarity=0.505 Sum_probs=647.9
Q ss_pred CcCCCCCCCccchHhHHhhhccCCCccchhhhhhccc-CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCCCCchhHH
Q 047767 1 MLSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ-PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYN 79 (666)
Q Consensus 1 ~~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 79 (666)
|.+.|++|+..+|..++++|.+.+.++.+..+++.+. .+..++...+|++|..|++.|+++.|.++|++|++||..+||
T Consensus 77 m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~li~~~~~~g~~~~A~~~f~~m~~~d~~~~n 156 (857)
T PLN03077 77 MQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAMLSMFVRFGELVHAWYVFGKMPERDLFSWN 156 (857)
T ss_pred HHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHHHHHHHhCCChHHHHHHHhcCCCCCeeEHH
Confidence 4567899999999999999999999999999999988 888899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcC
Q 047767 80 LLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMG 159 (666)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g 159 (666)
.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.+++..+.+.|+.||..+++.|+.+|++.|
T Consensus 157 ~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~n~Li~~y~k~g 236 (857)
T PLN03077 157 VLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGREVHAHVVRFGFELDVDVVNALITMYVKCG 236 (857)
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHHHHHHHHHHcCCCcccchHhHHHHHHhcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHH
Q 047767 160 PSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK 239 (666)
Q Consensus 160 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 239 (666)
++++|.++|++|++||..+||++|.+|++.|++++|+++|++|.+.|+.||..||+.++.+|++.|+.+.+.+++..+.+
T Consensus 237 ~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~Pd~~ty~~ll~a~~~~g~~~~a~~l~~~~~~ 316 (857)
T PLN03077 237 DVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDPDLMTITSVISACELLGDERLGREMHGYVVK 316 (857)
T ss_pred CHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHH
Q 047767 240 LGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEF 319 (666)
Q Consensus 240 ~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~l 319 (666)
.| +.||..+|+.|+.+|++.|++++|.++|++|..+|+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+
T Consensus 317 ~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~l 395 (857)
T PLN03077 317 TG-FAVDVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYEKNGLPDKALETYALMEQDNVSPDEITIASV 395 (857)
T ss_pred hC-CccchHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCCCceeHHHH
Confidence 99 99999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHH
Q 047767 320 LNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399 (666)
Q Consensus 320 l~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 399 (666)
+.+|++.|+++.+.++++.+.+.|+.+ +..+++.|+++|+++|++++|.++|++|.++|+.+||.+|.+|++.|+.++|
T Consensus 396 l~a~~~~g~~~~a~~l~~~~~~~g~~~-~~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA 474 (857)
T PLN03077 396 LSACACLGDLDVGVKLHELAERKGLIS-YVVVANALIEMYSKCKCIDKALEVFHNIPEKDVISWTSIIAGLRLNNRCFEA 474 (857)
T ss_pred HHHHhccchHHHHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCHHHHHHHHHhCCCCCeeeHHHHHHHHHHCCCHHHH
Confidence 999999999999999999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCC
Q 047767 400 VEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP 479 (666)
Q Consensus 400 ~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 479 (666)
+.+|++|.. ++.||..||+.+|.+ |+..|+++.+.+++..+.+.|+.++..++|+|+++|+++|++++|.++|+++
T Consensus 475 ~~lf~~m~~-~~~pd~~t~~~lL~a--~~~~g~l~~~~~i~~~~~~~g~~~~~~~~naLi~~y~k~G~~~~A~~~f~~~- 550 (857)
T PLN03077 475 LIFFRQMLL-TLKPNSVTLIAALSA--CARIGALMCGKEIHAHVLRTGIGFDGFLPNALLDLYVRCGRMNYAWNQFNSH- 550 (857)
T ss_pred HHHHHHHHh-CCCCCHhHHHHHHHH--HhhhchHHHhHHHHHHHHHhCCCccceechHHHHHHHHcCCHHHHHHHHHhc-
Confidence 999999986 699999999999999 9999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHH
Q 047767 480 SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC 559 (666)
Q Consensus 480 ~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 559 (666)
.+|..+||+||.+|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+|+.|+..+|++
T Consensus 551 ~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~v~ea~~~f~~M~~~~gi~P~~~~y~~ 630 (857)
T PLN03077 551 EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCACSRSGMVTQGLEYFHSMEEKYSITPNLKHYAC 630 (857)
T ss_pred CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHHhhcChHHHHHHHHHHHHHHhCCCCchHHHHH
Confidence 89999999999999999999999999999999999999999999999999999999999999999977799999999999
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHH
Q 047767 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639 (666)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 639 (666)
++++|++.|++++|.+++++|+.+||..+|.+|+.+|..+|+.+.++.+.+++++++|+++..|..|+++|...|++++|
T Consensus 631 lv~~l~r~G~~~eA~~~~~~m~~~pd~~~~~aLl~ac~~~~~~e~~e~~a~~l~~l~p~~~~~y~ll~n~ya~~g~~~~a 710 (857)
T PLN03077 631 VVDLLGRAGKLTEAYNFINKMPITPDPAVWGALLNACRIHRHVELGELAAQHIFELDPNSVGYYILLCNLYADAGKWDEV 710 (857)
T ss_pred HHHHHHhCCCHHHHHHHHHHCCCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhhCCCCcchHHHHHHHHHHCCChHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCcCCCceEEEeCCc
Q 047767 640 MQIRETALARKLTRDIGHSLIEVNSC 665 (666)
Q Consensus 640 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 665 (666)
.++++.|+++|++++||.+||+++++
T Consensus 711 ~~vr~~M~~~g~~k~~g~s~ie~~~~ 736 (857)
T PLN03077 711 ARVRKTMRENGLTVDPGCSWVEVKGK 736 (857)
T ss_pred HHHHHHHHHcCCCCCCCccEEEECCE
Confidence 99999999999999999999999873
No 2
>PLN03077 Protein ECB2; Provisional
Probab=100.00 E-value=4.4e-79 Score=667.62 Aligned_cols=576 Identities=25% Similarity=0.444 Sum_probs=561.9
Q ss_pred CCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHH
Q 047767 72 ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL 151 (666)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 151 (666)
.++..++|.++.+|++.|++++|..+|+.|.+.|++|+..+|..++.+|...+.++.+.+++..+.+.+..++...++.+
T Consensus 48 ~~~~~~~n~~i~~l~~~g~~~~A~~l~~~m~~~g~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~n~l 127 (857)
T PLN03077 48 SSSTHDSNSQLRALCSHGQLEQALKLLESMQELRVPVDEDAYVALFRLCEWKRAVEEGSRVCSRALSSHPSLGVRLGNAM 127 (857)
T ss_pred ccchhhHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCCChhHHHHHHHHHhhCCCHHHHHHHHHHHHHcCCCCCchHHHHH
Confidence 56788899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHH
Q 047767 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK 231 (666)
Q Consensus 152 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 231 (666)
+.+|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++++|+..+++..+.
T Consensus 128 i~~~~~~g~~~~A~~~f~~m~~~d~~~~n~li~~~~~~g~~~~A~~~f~~M~~~g~~Pd~~t~~~ll~~~~~~~~~~~~~ 207 (857)
T PLN03077 128 LSMFVRFGELVHAWYVFGKMPERDLFSWNVLVGGYAKAGYFDEALCLYHRMLWAGVRPDVYTFPCVLRTCGGIPDLARGR 207 (857)
T ss_pred HHHHHhCCChHHHHHHHhcCCCCCeeEHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCChhHHHHHHHHhCCccchhhHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCC
Q 047767 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP 311 (666)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p 311 (666)
+++..+.+.| +.||..+++.|+.+|++.|++++|.++|++|+.+|+.+||++|.+|++.|++++|+++|++|...|+.|
T Consensus 208 ~~~~~~~~~g-~~~~~~~~n~Li~~y~k~g~~~~A~~lf~~m~~~d~~s~n~li~~~~~~g~~~eAl~lf~~M~~~g~~P 286 (857)
T PLN03077 208 EVHAHVVRFG-FELDVDVVNALITMYVKCGDVVSARLVFDRMPRRDCISWNAMISGYFENGECLEGLELFFTMRELSVDP 286 (857)
T ss_pred HHHHHHHHcC-CCcccchHhHHHHHHhcCCCHHHHHHHHhcCCCCCcchhHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC
Confidence 9999999999 999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHH
Q 047767 312 SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLL 391 (666)
Q Consensus 312 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~ 391 (666)
|..||+.++.+|++.|+.+.+.+++..+.+.|+.| +..+++.|+.+|++.|++++|.++|+.|..+|+.+||.+|.+|+
T Consensus 287 d~~ty~~ll~a~~~~g~~~~a~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~d~~s~n~li~~~~ 365 (857)
T PLN03077 287 DLMTITSVISACELLGDERLGREMHGYVVKTGFAV-DVSVCNSLIQMYLSLGSWGEAEKVFSRMETKDAVSWTAMISGYE 365 (857)
T ss_pred ChhHHHHHHHHHHhcCChHHHHHHHHHHHHhCCcc-chHHHHHHHHHHHhcCCHHHHHHHHhhCCCCCeeeHHHHHHHHH
Confidence 99999999999999999999999999999999999 99999999999999999999999999999999999999999999
Q ss_pred hcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHH
Q 047767 392 HSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471 (666)
Q Consensus 392 ~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (666)
+.|++++|+++|++|.+.|+.||..||+.++.+ |...++++.+.++++.+.+.|+.|+..++++|+.+|++.|++++|
T Consensus 366 ~~g~~~~A~~lf~~M~~~g~~Pd~~t~~~ll~a--~~~~g~~~~a~~l~~~~~~~g~~~~~~~~n~Li~~y~k~g~~~~A 443 (857)
T PLN03077 366 KNGLPDKALETYALMEQDNVSPDEITIASVLSA--CACLGDLDVGVKLHELAERKGLISYVVVANALIEMYSKCKCIDKA 443 (857)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCCceeHHHHHHH--HhccchHHHHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999999999999999999999 999999999999999999999999999999999999999999999
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCC
Q 047767 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551 (666)
Q Consensus 472 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 551 (666)
.++|++|.++|..+|+++|.+|++.|+.++|+.+|++|.. ++.||..||+.++.+|++.|+++.+.+++..+.+. |+.
T Consensus 444 ~~vf~~m~~~d~vs~~~mi~~~~~~g~~~eA~~lf~~m~~-~~~pd~~t~~~lL~a~~~~g~l~~~~~i~~~~~~~-g~~ 521 (857)
T PLN03077 444 LEVFHNIPEKDVISWTSIIAGLRLNNRCFEALIFFRQMLL-TLKPNSVTLIAALSACARIGALMCGKEIHAHVLRT-GIG 521 (857)
T ss_pred HHHHHhCCCCCeeeHHHHHHHHHHCCCHHHHHHHHHHHHh-CCCCCHhHHHHHHHHHhhhchHHHhHHHHHHHHHh-CCC
Confidence 9999999999999999999999999999999999999986 59999999999999999999999999999999998 999
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC-CCCcchHHHHHHHH
Q 047767 552 ADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFAVYSQVSNFY 630 (666)
Q Consensus 552 p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~~l~~~~ 630 (666)
+|..++++|+++|++.|++++|.++|+.+ .||..+|++++.+|.+.|+.++|+++|++|.+.. .+|..+|..++.+|
T Consensus 522 ~~~~~~naLi~~y~k~G~~~~A~~~f~~~--~~d~~s~n~lI~~~~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~ 599 (857)
T PLN03077 522 FDGFLPNALLDLYVRCGRMNYAWNQFNSH--EKDVVSWNILLTGYVAHGKGSMAVELFNRMVESGVNPDEVTFISLLCAC 599 (857)
T ss_pred ccceechHHHHHHHHcCCHHHHHHHHHhc--CCChhhHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCCcccHHHHHHHH
Confidence 99999999999999999999999999998 7899999999999999999999999999999843 44678999999999
Q ss_pred hhcCCchHHHHHHHHHH-hCCCCcCC
Q 047767 631 SEIGEFEVSMQIRETAL-ARKLTRDI 655 (666)
Q Consensus 631 ~~~g~~~~A~~~~~~~~-~~~~~~~~ 655 (666)
.+.|++++|.++|+.|. +.|+.|+.
T Consensus 600 ~~~g~v~ea~~~f~~M~~~~gi~P~~ 625 (857)
T PLN03077 600 SRSGMVTQGLEYFHSMEEKYSITPNL 625 (857)
T ss_pred hhcChHHHHHHHHHHHHHHhCCCCch
Confidence 99999999999999998 67888764
No 3
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=2e-72 Score=600.49 Aligned_cols=487 Identities=29% Similarity=0.498 Sum_probs=478.9
Q ss_pred CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHH
Q 047767 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANA 252 (666)
Q Consensus 174 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 252 (666)
++..+|+.+|.++.+.|++++|+++|+.|...+ +.||..||+.++.+|++.++.+.+.+++..|.+.| +.||..+++.
T Consensus 85 ~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g-~~~~~~~~n~ 163 (697)
T PLN03081 85 KSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSG-FEPDQYMMNR 163 (697)
T ss_pred CCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhC-CCcchHHHHH
Confidence 567799999999999999999999999999864 78999999999999999999999999999999999 9999999999
Q ss_pred HHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhH
Q 047767 253 LVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332 (666)
Q Consensus 253 l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 332 (666)
|+.+|++.|++++|.++|++|+.||..+||++|.+|++.|++++|+++|++|.+.|+.|+..||..++.+|++.|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 047767 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412 (666)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 412 (666)
.+++..+.+.|+.+ +..+++.|+++|+++|++++|.++|+.|..+|+++||.+|.+|++.|++++|+++|++|.+.|+.
T Consensus 244 ~~l~~~~~~~g~~~-d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 244 QQLHCCVLKTGVVG-DTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHhCCCc-cceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999999 99999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHH
Q 047767 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNG 492 (666)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~ 492 (666)
||..||+.++.+ |...++++.|.+++..|.+.|++|+..++++|+++|++.|++++|.++|++|.+||+.+||+||.+
T Consensus 323 pd~~t~~~ll~a--~~~~g~~~~a~~i~~~m~~~g~~~d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~ 400 (697)
T PLN03081 323 IDQFTFSIMIRI--FSRLALLEHAKQAHAGLIRTGFPLDIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAG 400 (697)
T ss_pred CCHHHHHHHHHH--HHhccchHHHHHHHHHHHHhCCCCCeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHH
Confidence 999999999999 999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHH
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 572 (666)
|++.|+.++|+++|++|.+.|+.||..||+.++.+|.+.|++++|.++|+.|.+.+|+.|+..+|+.++++|++.|++++
T Consensus 401 y~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~e 480 (697)
T PLN03081 401 YGNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSACRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLDE 480 (697)
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHHH
Confidence 99999999999999999999999999999999999999999999999999999877999999999999999999999999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 573 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
|.++++++...|+..+|++++.+|..+|+++.|..+++++++..|++...|..|+.+|++.|++++|.++++.|+++|++
T Consensus 481 A~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~g~~ 560 (697)
T PLN03081 481 AYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYGMGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRKGLS 560 (697)
T ss_pred HHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhCCCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHcCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCCCceEEEeCC
Q 047767 653 RDIGHSLIEVNS 664 (666)
Q Consensus 653 ~~~~~~~~~~~~ 664 (666)
+.||.+||++++
T Consensus 561 k~~g~s~i~~~~ 572 (697)
T PLN03081 561 MHPACTWIEVKK 572 (697)
T ss_pred cCCCeeEEEECC
Confidence 999999999986
No 4
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=2.4e-68 Score=569.52 Aligned_cols=520 Identities=17% Similarity=0.218 Sum_probs=344.5
Q ss_pred chhhhhHHHHhHhcCCChhhHHHHhhcCCCCC-----chhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHH
Q 047767 43 NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARD-----MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVL 117 (666)
Q Consensus 43 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll 117 (666)
+...|..++..|++.|++++|.++|++|++++ ...++.++.+|.+.|.+++|+.+|+.|.. ||..+|+.++
T Consensus 369 ~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~----pd~~Tyn~LL 444 (1060)
T PLN03218 369 KSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRN----PTLSTFNMLM 444 (1060)
T ss_pred CchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCC----CCHHHHHHHH
Confidence 34444444444445555555555555554322 22333444444445555555555544432 4455555555
Q ss_pred HHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC----CCcccHHHHHHHHHhcCCch
Q 047767 118 SVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE----RNLATWNLMLRAFCELSRPD 193 (666)
Q Consensus 118 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~ 193 (666)
.+|++.|+++.|.++|+.|.+.|+.||..+|+.||.+|++.|++++|.++|++|.+ ||..+|+.||.+|++.|+++
T Consensus 445 ~a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~Gv~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 445 SVCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAGVEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCcCHH
Confidence 55555555555555555555555555555555555555555555555555554442 45555555555555555555
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHH--hCCCCchHHHHHHHHHHHHccCChHHHHHHhc
Q 047767 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIK--LGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271 (666)
Q Consensus 194 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 271 (666)
+|+++|++|.+.|+.||..||+.+|.+|++.|++++|.+++++|.+ .+ +.||..+|+.++.+|++.|++++|.++|+
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~g-i~PD~vTynaLI~ay~k~G~ldeA~elf~ 603 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHP-IDPDHITVGALMKACANAGQVDRAKEVYQ 603 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCC-CCCcHHHHHHHHHHHHHCCCHHHHHHHHH
Confidence 5555555555555555555555555555555555555555555544 23 45555555555555555555555555555
Q ss_pred cCC----CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC
Q 047767 272 FIP----VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG 347 (666)
Q Consensus 272 ~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~ 347 (666)
.|. .|+..+|+.+|.+|++.|++++|.++|++|.+.|+.||..||+.++.+|++.|+++.|..+++.|.+.|+.|
T Consensus 604 ~M~e~gi~p~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~TynsLI~a~~k~G~~eeA~~l~~eM~k~G~~p- 682 (1060)
T PLN03218 604 MIHEYNIKGTPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFFSALVDVAGHAGDLDKAFEILQDARKQGIKL- 682 (1060)
T ss_pred HHHHcCCCCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCC-
Confidence 554 234556666666666666666666666666666666666666666666666666666666666666666666
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCC----CCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAP----GRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 423 (666)
+..+|+.++.+|++.|++++|.++|+.|. .||..+||.+|.+|++.|++++|+++|++|...|+.||..||+.++.
T Consensus 683 d~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~ 762 (1060)
T PLN03218 683 GTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALCEGNQLPKALEVLSEMKRLGLCPNTITYSILLV 762 (1060)
T ss_pred CHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 66666666666666666666666666653 35889999999999999999999999999999999999999999999
Q ss_pred hhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHH
Q 047767 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREAL 503 (666)
Q Consensus 424 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 503 (666)
+ |...++.+.|..++..|.+.|+.|+..+|++++.+|. +++++|..+.+.+.. |+. .......+..+.|+
T Consensus 763 a--~~k~G~le~A~~l~~~M~k~Gi~pd~~tynsLIglc~--~~y~ka~~l~~~v~~-----f~~-g~~~~~n~w~~~Al 832 (1060)
T PLN03218 763 A--SERKDDADVGLDLLSQAKEDGIKPNLVMCRCITGLCL--RRFEKACALGEPVVS-----FDS-GRPQIENKWTSWAL 832 (1060)
T ss_pred H--HHHCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH--HHHHHHhhhhhhhhh-----hhc-cccccccchHHHHH
Confidence 9 9999999999999999999999999999999997654 245555555433321 110 11111223446799
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 504 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
.+|++|++.|+.||..||+.++.++++.+..+.+..+++.|... +..|+..+|++|++++.+. .++|..++++|.
T Consensus 833 ~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~-~~~~~~~~y~~Li~g~~~~--~~~A~~l~~em~ 907 (1060)
T PLN03218 833 MVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGIS-ADSQKQSNLSTLVDGFGEY--DPRAFSLLEEAA 907 (1060)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccC-CCCcchhhhHHHHHhhccC--hHHHHHHHHHHH
Confidence 99999999999999999999998888999999999999988776 7888899999999998432 468999999886
No 5
>PLN03081 pentatricopeptide (PPR) repeat-containing protein; Provisional
Probab=100.00 E-value=7.2e-67 Score=557.71 Aligned_cols=475 Identities=24% Similarity=0.348 Sum_probs=460.0
Q ss_pred CCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCC-CCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhH
Q 047767 72 ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHG-IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP 150 (666)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 150 (666)
.++..+|+.+|.++.+.|++++|+++|+.|...+ ..||..+|+.++.+|++.++++.+.+++..|.+.|+.||..+|+.
T Consensus 84 ~~~~~~~~~~i~~l~~~g~~~~Al~~f~~m~~~~~~~~~~~t~~~ll~a~~~~~~~~~a~~l~~~m~~~g~~~~~~~~n~ 163 (697)
T PLN03081 84 RKSGVSLCSQIEKLVACGRHREALELFEILEAGCPFTLPASTYDALVEACIALKSIRCVKAVYWHVESSGFEPDQYMMNR 163 (697)
T ss_pred CCCceeHHHHHHHHHcCCCHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHhCCCcchHHHHH
Confidence 3467799999999999999999999999998764 789999999999999999999999999999999999999999999
Q ss_pred HHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHH
Q 047767 151 LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEG 230 (666)
Q Consensus 151 ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 230 (666)
|+.+|++.|+++.|.++|++|++||..+||.+|.+|++.|++++|+++|++|.+.|+.||..||..++.+|+..|..+.+
T Consensus 164 Li~~y~k~g~~~~A~~lf~~m~~~~~~t~n~li~~~~~~g~~~~A~~lf~~M~~~g~~p~~~t~~~ll~a~~~~~~~~~~ 243 (697)
T PLN03081 164 VLLMHVKCGMLIDARRLFDEMPERNLASWGTIIGGLVDAGNYREAFALFREMWEDGSDAEPRTFVVMLRASAGLGSARAG 243 (697)
T ss_pred HHHHHhcCCCHHHHHHHHhcCCCCCeeeHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCChhhHHHHHHHHhcCCcHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCC
Q 047767 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKR 310 (666)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (666)
.+++..+.+.| +.+|..+++.|+++|++.|++++|.++|+.|+++|+.+||++|.+|++.|++++|+++|++|.+.|+.
T Consensus 244 ~~l~~~~~~~g-~~~d~~~~n~Li~~y~k~g~~~~A~~vf~~m~~~~~vt~n~li~~y~~~g~~~eA~~lf~~M~~~g~~ 322 (697)
T PLN03081 244 QQLHCCVLKTG-VVGDTFVSCALIDMYSKCGDIEDARCVFDGMPEKTTVAWNSMLAGYALHGYSEEALCLYYEMRDSGVS 322 (697)
T ss_pred HHHHHHHHHhC-CCccceeHHHHHHHHHHCCCHHHHHHHHHhCCCCChhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCC
Confidence 99999999999 99999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHH
Q 047767 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSL 390 (666)
Q Consensus 311 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~ 390 (666)
||..||+.++.+|++.|+++.|.+++..+.+.|+.+ +..+++.|+++|+++|++++|.++|+.|.++|+.+||++|.+|
T Consensus 323 pd~~t~~~ll~a~~~~g~~~~a~~i~~~m~~~g~~~-d~~~~~~Li~~y~k~G~~~~A~~vf~~m~~~d~~t~n~lI~~y 401 (697)
T PLN03081 323 IDQFTFSIMIRIFSRLALLEHAKQAHAGLIRTGFPL-DIVANTALVDLYSKWGRMEDARNVFDRMPRKNLISWNALIAGY 401 (697)
T ss_pred CCHHHHHHHHHHHHhccchHHHHHHHHHHHHhCCCC-CeeehHHHHHHHHHCCCHHHHHHHHHhCCCCCeeeHHHHHHHH
Confidence 999999999999999999999999999999999999 9999999999999999999999999999999999999999999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHH-hCCCCchHHHHHHHHHHHhhCCHH
Q 047767 391 LHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK-SGFESNIAVSCSLMDAYSRCGHIE 469 (666)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~ 469 (666)
++.|+.++|+++|++|.+.|+.||..||+.+|.+ |...|..++|.++|+.|.+ .|+.|+..+|+.++++|++.|+++
T Consensus 402 ~~~G~~~~A~~lf~~M~~~g~~Pd~~T~~~ll~a--~~~~g~~~~a~~~f~~m~~~~g~~p~~~~y~~li~~l~r~G~~~ 479 (697)
T PLN03081 402 GNHGRGTKAVEMFERMIAEGVAPNHVTFLAVLSA--CRYSGLSEQGWEIFQSMSENHRIKPRAMHYACMIELLGREGLLD 479 (697)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHH--HhcCCcHHHHHHHHHHHHHhcCCCCCccchHhHHHHHHhcCCHH
Confidence 9999999999999999999999999999999999 9999999999999999976 699999999999999999999999
Q ss_pred HHHHHhccCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHh
Q 047767 470 LSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547 (666)
Q Consensus 470 ~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 547 (666)
+|.++++++. +|+..+|++|+.+|+..|+++.|..+++++.+ +.|+ ..+|..+++.|++.|++++|.++++.|.+.
T Consensus 480 eA~~~~~~~~~~p~~~~~~~Ll~a~~~~g~~~~a~~~~~~l~~--~~p~~~~~y~~L~~~y~~~G~~~~A~~v~~~m~~~ 557 (697)
T PLN03081 480 EAYAMIRRAPFKPTVNMWAALLTACRIHKNLELGRLAAEKLYG--MGPEKLNNYVVLLNLYNSSGRQAEAAKVVETLKRK 557 (697)
T ss_pred HHHHHHHHCCCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHhC--CCCCCCcchHHHHHHHHhCCCHHHHHHHHHHHHHc
Confidence 9999999997 69999999999999999999999999999976 6675 458999999999999999999999999998
Q ss_pred hCCCCC
Q 047767 548 YGIDAD 553 (666)
Q Consensus 548 ~~~~p~ 553 (666)
|++..
T Consensus 558 -g~~k~ 562 (697)
T PLN03081 558 -GLSMH 562 (697)
T ss_pred -CCccC
Confidence 88644
No 6
>PLN03218 maturation of RBCL 1; Provisional
Probab=100.00 E-value=1.5e-65 Score=548.01 Aligned_cols=513 Identities=16% Similarity=0.218 Sum_probs=450.2
Q ss_pred CCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcC-CCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHH
Q 047767 106 IKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF-GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184 (666)
Q Consensus 106 ~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 184 (666)
..++...|..++..+++.|++++|.++|+.|.+.|+ +++..+++.++.+|.+.|..++|..+|+.|..||..+|+.+|.
T Consensus 366 ~~~~~~~~~~~y~~l~r~G~l~eAl~Lfd~M~~~gvv~~~~v~~~~li~~~~~~g~~~eAl~lf~~M~~pd~~Tyn~LL~ 445 (1060)
T PLN03218 366 GKRKSPEYIDAYNRLLRDGRIKDCIDLLEDMEKRGLLDMDKIYHAKFFKACKKQRAVKEAFRFAKLIRNPTLSTFNMLMS 445 (1060)
T ss_pred CCCCchHHHHHHHHHHHCcCHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHCCCHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 356788899999999999999999999999999885 5677888899999999999999999999999999999999999
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChH
Q 047767 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264 (666)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 264 (666)
+|++.|+++.|.++|++|.+.|+.||..+|+.+|.+|++.|+++.|.++|++|.+.| +.||..+|+.+|.+|++.|+++
T Consensus 446 a~~k~g~~e~A~~lf~~M~~~Gl~pD~~tynsLI~~y~k~G~vd~A~~vf~eM~~~G-v~PdvvTynaLI~gy~k~G~~e 524 (1060)
T PLN03218 446 VCASSQDIDGALRVLRLVQEAGLKADCKLYTTLISTCAKSGKVDAMFEVFHEMVNAG-VEANVHTFGALIDGCARAGQVA 524 (1060)
T ss_pred HHHhCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCcCHHHHHHHHHHHHHcC-CCCCHHHHHHHHHHHHHCcCHH
Confidence 999999999999999999999999999999999999999999999999999999999 8999999999999999999999
Q ss_pred HHHHHhccCC----CCChhhHHHHHHHHHcCCChHHHHHHHHHhHh--cCCCCChhhHHHHHHHHhccCChhhHHHHHHH
Q 047767 265 EAKKSFDFIP----VDDVISWNSIVSIYADYDLIFDALELFFRMQL--CRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338 (666)
Q Consensus 265 ~A~~~~~~~~----~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~--~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 338 (666)
+|.++|+.|. .||..+|+.+|.+|++.|++++|.++|++|.. .|+.||..||+.++.+|++.|+++.|.++++.
T Consensus 525 eAl~lf~~M~~~Gv~PD~vTYnsLI~a~~k~G~~deA~~lf~eM~~~~~gi~PD~vTynaLI~ay~k~G~ldeA~elf~~ 604 (1060)
T PLN03218 525 KAFGAYGIMRSKNVKPDRVVFNALISACGQSGAVDRAFDVLAEMKAETHPIDPDHITVGALMKACANAGQVDRAKEVYQM 604 (1060)
T ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 9999988885 57888999999999999999999999999876 57888988999999999999999889999888
Q ss_pred HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 047767 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418 (666)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 418 (666)
|.+.|+.| +..+|+.+|.+|++.|++++|+++|++|.+.|+.||..||
T Consensus 605 M~e~gi~p--------------------------------~~~tynsLI~ay~k~G~~deAl~lf~eM~~~Gv~PD~~Ty 652 (1060)
T PLN03218 605 IHEYNIKG--------------------------------TPEVYTIAVNSCSQKGDWDFALSIYDDMKKKGVKPDEVFF 652 (1060)
T ss_pred HHHcCCCC--------------------------------ChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCCHHHH
Confidence 88888877 6677888888888888888888888999888888998899
Q ss_pred HHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCC----CCCHHHHHHHHHHHH
Q 047767 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP----SPNVVCFTSIMNGYS 494 (666)
Q Consensus 419 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~ 494 (666)
+.++.+ +...++.+.|.+++..|.+.|++|+..+|++++.+|++.|++++|.++|++|. .||..+|++||.+|+
T Consensus 653 nsLI~a--~~k~G~~eeA~~l~~eM~k~G~~pd~~tynsLI~ay~k~G~~eeA~~lf~eM~~~g~~PdvvtyN~LI~gy~ 730 (1060)
T PLN03218 653 SALVDV--AGHAGDLDKAFEILQDARKQGIKLGTVSYSSLMGACSNAKNWKKALELYEDIKSIKLRPTVSTMNALITALC 730 (1060)
T ss_pred HHHHHH--HHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHH
Confidence 999888 88888889999999988888888999999999999999999999999998885 588889999999999
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh----c---
Q 047767 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR----A--- 567 (666)
Q Consensus 495 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~--- 567 (666)
+.|++++|.++|++|.+.|+.||..||+.++.+|++.|++++|.++++.|.+. |+.||..+|++|+..+.+ +
T Consensus 731 k~G~~eeAlelf~eM~~~Gi~Pd~~Ty~sLL~a~~k~G~le~A~~l~~~M~k~-Gi~pd~~tynsLIglc~~~y~ka~~l 809 (1060)
T PLN03218 731 EGNQLPKALEVLSEMKRLGLCPNTITYSILLVASERKDDADVGLDLLSQAKED-GIKPNLVMCRCITGLCLRRFEKACAL 809 (1060)
T ss_pred HCCCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHHHHHHHhhh
Confidence 99999999999999988888999999999999999999999999999999887 889998888888765331 1
Q ss_pred ----------------CChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHh-cCCCCcchHHHHH
Q 047767 568 ----------------GILDKAEELLQQTP---GGGDCMMWSSLLRSCRVHGNEIIGRRVANILME-LEPVDFAVYSQVS 627 (666)
Q Consensus 568 ----------------g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~p~~~~~~~~l~ 627 (666)
+..++|..+|++|. ..||..+|+.++..+...+..+.+...++.+.. ..+++..+|..|+
T Consensus 810 ~~~v~~f~~g~~~~~n~w~~~Al~lf~eM~~~Gi~Pd~~T~~~vL~cl~~~~~~~~~~~m~~~m~~~~~~~~~~~y~~Li 889 (1060)
T PLN03218 810 GEPVVSFDSGRPQIENKWTSWALMVYRETISAGTLPTMEVLSQVLGCLQLPHDATLRNRLIENLGISADSQKQSNLSTLV 889 (1060)
T ss_pred hhhhhhhhccccccccchHHHHHHHHHHHHHCCCCCCHHHHHHHHHHhcccccHHHHHHHHHHhccCCCCcchhhhHHHH
Confidence 12467889999887 678999999999766677888888888876543 4566778899999
Q ss_pred HHHhhcCCchHHHHHHHHHHhCCCCcCCC
Q 047767 628 NFYSEIGEFEVSMQIRETALARKLTRDIG 656 (666)
Q Consensus 628 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 656 (666)
..+.+. .++|..++++|.+.|+.|+..
T Consensus 890 ~g~~~~--~~~A~~l~~em~~~Gi~p~~~ 916 (1060)
T PLN03218 890 DGFGEY--DPRAFSLLEEAASLGVVPSVS 916 (1060)
T ss_pred HhhccC--hHHHHHHHHHHHHcCCCCCcc
Confidence 987332 368999999999999998864
No 7
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=1.5e-36 Score=342.11 Aligned_cols=624 Identities=11% Similarity=-0.005 Sum_probs=309.1
Q ss_pred CccchHhHHhhhccCCCccchhhhhhcccCCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCC--CC-chhHHHHHHHh
Q 047767 9 RVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RD-MVTYNLLISGC 85 (666)
Q Consensus 9 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll~~~ 85 (666)
+...+..+...+...|+++.|...++.+....+.+...+......+...|++++|...|+++.+ |+ ...+..+...+
T Consensus 226 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~ 305 (899)
T TIGR02917 226 NPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKALVDFQKKNYEDARETLQDALKSAPEYLPALLLAGASE 305 (899)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCchhHHHHHHHHH
Confidence 3445556666667777777777777766622222333333334444556666666666665542 11 12223333344
Q ss_pred hcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHH
Q 047767 86 GKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRAL 165 (666)
Q Consensus 86 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~ 165 (666)
...|+++.|...+++..+.. +.+...+..+...+...|++++|...+..+.+.. +.+...+..+...+.+.|++++|.
T Consensus 306 ~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~ 383 (899)
T TIGR02917 306 YQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDEAIATLSPALGLD-PDDPAALSLLGEAYLALGDFEKAA 383 (899)
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 45555555555555555432 2233444445555555555555555555554433 233444555555555555555555
Q ss_pred HhhccCCC--C-CcccHHHHHHHHHhcCCchHHHHHHHHHHHcC---------------------------------CCC
Q 047767 166 DLFDELPE--R-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEG---------------------------------VEP 209 (666)
Q Consensus 166 ~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~---------------------------------~~p 209 (666)
+.|+.+.+ | +...+..+...+...|++++|.+.|+.+.+.. .++
T Consensus 384 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~ 463 (899)
T TIGR02917 384 EYLAKATELDPENAAARTQLGISKLSQGDPSEAIADLETAAQLDPELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPD 463 (899)
T ss_pred HHHHHHHhcCCCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhhCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCC
Confidence 55554432 1 22334444444444555555555554444332 223
Q ss_pred CHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC---CCChhhHHHHHH
Q 047767 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVS 286 (666)
Q Consensus 210 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~ 286 (666)
+..++..+...+...|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++.+. +.+..++..+..
T Consensus 464 ~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~ 541 (899)
T TIGR02917 464 NASLHNLLGAIYLGKGDLAKAREAFEKALSIE--PDFFPAAANLARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAG 541 (899)
T ss_pred CcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 34444444444555555555555555554443 3334444444555555555555555554442 123344444555
Q ss_pred HHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChH
Q 047767 287 IYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIE 366 (666)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 366 (666)
.+.+.|+.++|...++++...+ +.+...+..+...+...|+++.|...++.+.+.. |.+...+..++.+|...|+++
T Consensus 542 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~ 618 (899)
T TIGR02917 542 LYLRTGNEEEAVAWLEKAAELN-PQEIEPALALAQYYLGKGQLKKALAILNEAADAA--PDSPEAWLMLGRAQLAAGDLN 618 (899)
T ss_pred HHHHcCCHHHHHHHHHHHHHhC-ccchhHHHHHHHHHHHCCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHHHcCCHH
Confidence 5555555555555555544332 1223334444455555555555555555544432 114445555555555555555
Q ss_pred HHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHH
Q 047767 367 SSVAVFESAPG---RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443 (666)
Q Consensus 367 ~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 443 (666)
+|...|+.+.. .+...+..+...+.+.|++++|...|+++.+.. +.+..++..+... ....++.+.|..++..+
T Consensus 619 ~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~ 695 (899)
T TIGR02917 619 KAVSSFKKLLALQPDSALALLLLADAYAVMKNYAKAITSLKRALELK-PDNTEAQIGLAQL--LLAAKRTESAKKIAKSL 695 (899)
T ss_pred HHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHH
Confidence 55555544322 133344445555555555555555555554431 1123333334333 44455555555555555
Q ss_pred HHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 047767 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521 (666)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 521 (666)
.+.+ +.+...+..+...+...|++++|.+.|+.+.. |+..++..+..++.+.|++++|.+.++++.+.. +.+...+
T Consensus 696 ~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~-~~~~~~~ 773 (899)
T TIGR02917 696 QKQH-PKAALGFELEGDLYLRQKDYPAAIQAYRKALKRAPSSQNAIKLHRALLASGNTAEAVKTLEAWLKTH-PNDAVLR 773 (899)
T ss_pred HhhC-cCChHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHH
Confidence 4443 23344444455555555555555555555442 333444455555555555555555555555431 2233345
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh
Q 047767 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH 599 (666)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 599 (666)
..+...|...|++++|.+.|+++.+. .++++..++.++..+...|+ .+|+++++++. ..| +...+..+...+...
T Consensus 774 ~~la~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 850 (899)
T TIGR02917 774 TALAELYLAQKDYDKAIKHYRTVVKK--APDNAVVLNNLAWLYLELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEK 850 (899)
T ss_pred HHHHHHHHHCcCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHc
Confidence 55555555555555555555555543 12234555555555555555 55555555432 222 334444555555555
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 600 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
|++++|.+.++++++.+|.++.++..++.++.+.|+.++|.+++++|.
T Consensus 851 g~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 898 (899)
T TIGR02917 851 GEADRALPLLRKAVNIAPEAAAIRYHLALALLATGRKAEARKELDKLL 898 (899)
T ss_pred CCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHh
Confidence 566666666666666555555555566666666666666666555553
No 8
>TIGR02917 PEP_TPR_lipo putative PEP-CTERM system TPR-repeat lipoprotein. This protein family occurs in strictly within a subset of Gram-negative bacterial species with the proposed PEP-CTERM/exosortase system, analogous to the LPXTG/sortase system common in Gram-positive bacteria. This protein occurs in a species if and only if a transmembrane histidine kinase (TIGR02916) and a DNA-binding response regulator (TIGR02915) also occur. The present of tetratricopeptide repeats (TPR) suggests protein-protein interaction, possibly for the regulation of PEP-CTERM protein expression, since many PEP-CTERM proteins in these genomes are preceded by a proposed DNA binding site for the response regulator.
Probab=100.00 E-value=4.9e-36 Score=338.05 Aligned_cols=630 Identities=13% Similarity=0.045 Sum_probs=426.0
Q ss_pred CCCccchHhHHhhhccCCCccchhhhhhcccCCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCC--C-CchhHHHHHH
Q 047767 7 LPRVRTITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--R-DMVTYNLLIS 83 (666)
Q Consensus 7 ~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~ 83 (666)
+++...+..+...+...|+++.|...++......+.+...+..++..+...|++++|...|+.+.+ | +...+.....
T Consensus 190 ~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 269 (899)
T TIGR02917 190 PGNVDALLLKGDLLLSLGNIELALAAYRKAIALRPNNPAVLLALATILIEAGEFEEAEKHADALLKKAPNSPLAHYLKAL 269 (899)
T ss_pred CCChHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHH
Confidence 344555666777888899999999999998855566778888999999999999999999998863 2 3334444445
Q ss_pred HhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhH
Q 047767 84 GCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVR 163 (666)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~ 163 (666)
.+...|++++|...|+++.+.+. .+...+..+...+...|++++|...++.+.+.. +.+...+..+...+.+.|++++
T Consensus 270 ~~~~~~~~~~A~~~~~~~l~~~~-~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~la~~~~~~g~~~~ 347 (899)
T TIGR02917 270 VDFQKKNYEDARETLQDALKSAP-EYLPALLLAGASEYQLGNLEQAYQYLNQILKYA-PNSHQARRLLASIQLRLGRVDE 347 (899)
T ss_pred HHHHhcCHHHHHHHHHHHHHhCC-CchhHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHCCCHHH
Confidence 56788999999999999988652 233445556677888999999999999998875 4566778888899999999999
Q ss_pred HHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 047767 164 ALDLFDELPE---RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240 (666)
Q Consensus 164 a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 240 (666)
|...++.+.. .+...+..+...+.+.|++++|.+.|+++.+.. +.+...+..+...+...|+.++|...++.+.+.
T Consensus 348 A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~ 426 (899)
T TIGR02917 348 AIATLSPALGLDPDDPAALSLLGEAYLALGDFEKAAEYLAKATELD-PENAAARTQLGISKLSQGDPSEAIADLETAAQL 426 (899)
T ss_pred HHHHHHHHHhcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhCCChHHHHHHHHHHHhh
Confidence 9999988765 345678889999999999999999999988753 224455666666677777777777777777665
Q ss_pred CCCCchHHHHHHHHHHHHccCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCC--------
Q 047767 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRK-------- 309 (666)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~-------- 309 (666)
. +........++..+.+.|++++|.++++.+. ++++..|..+...+...|++++|...|+++.+...
T Consensus 427 ~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~ 504 (899)
T TIGR02917 427 D--PELGRADLLLILSYLRSGQFDKALAAAKKLEKKQPDNASLHNLLGAIYLGKGDLAKAREAFEKALSIEPDFFPAAAN 504 (899)
T ss_pred C--CcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHhCCCCcHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCcHHHHHH
Confidence 4 3333344445555555555555555555443 12344455555555555555555555555543211
Q ss_pred -------------------------CCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 047767 310 -------------------------RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364 (666)
Q Consensus 310 -------------------------~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 364 (666)
+.+..++..+...+.+.|+.+++...++.+...+ |.+...+..++..|...|+
T Consensus 505 la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 582 (899)
T TIGR02917 505 LARIDIQEGNPDDAIQRFEKVLTIDPKNLRAILALAGLYLRTGNEEEAVAWLEKAAELN--PQEIEPALALAQYYLGKGQ 582 (899)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchhHHHHHHHHHHHCCC
Confidence 1223334444444444444444544444444432 2234444455555555555
Q ss_pred hHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHH
Q 047767 365 IESSVAVFESAPG---RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHC 441 (666)
Q Consensus 365 ~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 441 (666)
+++|..+++.+.. .+...|..+...+...|++++|...|+++.+.. +.+...+..+... +...++++.|...+.
T Consensus 583 ~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~~~~~A~~~~~ 659 (899)
T TIGR02917 583 LKKALAILNEAADAAPDSPEAWLMLGRAQLAAGDLNKAVSSFKKLLALQ-PDSALALLLLADA--YAVMKNYAKAITSLK 659 (899)
T ss_pred HHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHH--HHHcCCHHHHHHHHH
Confidence 5555555554432 233455555666666666666666666665432 1223333333333 555566666666666
Q ss_pred HHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH
Q 047767 442 CAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK 518 (666)
Q Consensus 442 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~ 518 (666)
.+.+.. +.+...+..+...+...|++++|.++++.+.+ ++...+..+...+...|++++|...++++.. ..|+.
T Consensus 660 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~~~~ 736 (899)
T TIGR02917 660 RALELK-PDNTEAQIGLAQLLLAAKRTESAKKIAKSLQKQHPKAALGFELEGDLYLRQKDYPAAIQAYRKALK--RAPSS 736 (899)
T ss_pred HHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCChHHHHHHHHHHHHCCCHHHHHHHHHHHHh--hCCCc
Confidence 555432 33455566666666666666666666666553 3455666667777777777777777777776 34555
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSC 596 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 596 (666)
.++..+..++.+.|++++|.+.++.+.+. .+.+...+..++..|...|++++|.+.|+++. .+++...+..++..+
T Consensus 737 ~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~ 814 (899)
T TIGR02917 737 QNAIKLHRALLASGNTAEAVKTLEAWLKT--HPNDAVLRTALAELYLAQKDYDKAIKHYRTVVKKAPDNAVVLNNLAWLY 814 (899)
T ss_pred hHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 66666777777778888888888777764 23447777788888888888888888888765 333677788888888
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
...|+ ++|+..++++++..|+++..+..++.++...|++++|.++++++.+.+..
T Consensus 815 ~~~~~-~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~ 869 (899)
T TIGR02917 815 LELKD-PRALEYAEKALKLAPNIPAILDTLGWLLVEKGEADRALPLLRKAVNIAPE 869 (899)
T ss_pred HhcCc-HHHHHHHHHHHhhCCCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 88888 77888888888888888888888888888899999999999888876653
No 9
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.98 E-value=1.2e-26 Score=260.58 Aligned_cols=617 Identities=12% Similarity=0.062 Sum_probs=456.8
Q ss_pred HhHHhhhccCCCccchhhhhhcccCCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCC--CCchhH-------------
Q 047767 14 TTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTY------------- 78 (666)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~------------- 78 (666)
....+.+-..++.+.|.+.++.+..-.+.++..+..++..+.+.|+.++|.+.+++..+ |+...+
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~P~~~~~~~~~~~~~~~~~~ 111 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLAPDSNAYRSSRTTMLLSTPE 111 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHhcCCc
Confidence 33445566778899999999988855555778888899999999999999999999874 433222
Q ss_pred ----HHHHHHhhcCCChhhHHHHHHHHHhCCCCCCccc-HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHH
Q 047767 79 ----NLLISGCGKFRHPKQALYLYDEMVSHGIKESAST-FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153 (666)
Q Consensus 79 ----~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 153 (666)
-.+...+...|++++|+..|+.+.+.+ +|+... ...........|+.++|.+.++.+.+.. +.+...+..+..
T Consensus 112 ~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~-P~~~~~~~~LA~ 189 (1157)
T PRK11447 112 GRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADY-PGNTGLRNTLAL 189 (1157)
T ss_pred hhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 223346788999999999999998754 334321 1112222334699999999999999875 456778888999
Q ss_pred HhHhcCChhHHHHhhccCCCCCcc------cH-----------------HHHHHHHHhcCCchHHHHHHHHHHHcCCCCC
Q 047767 154 LYMRMGPSVRALDLFDELPERNLA------TW-----------------NLMLRAFCELSRPDEVLRMYNKMKAEGVEPN 210 (666)
Q Consensus 154 ~~~~~g~~~~a~~~~~~~~~~~~~------~~-----------------~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~ 210 (666)
.+...|+.++|+..++++...... .| ...+..+-.......|...+..+......|+
T Consensus 190 ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~~dp~ 269 (1157)
T PRK11447 190 LLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQLADPA 269 (1157)
T ss_pred HHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhccCcc
Confidence 999999999999999987542110 01 1111111111223345555555444322333
Q ss_pred HhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCC--CCh---hhHH---
Q 047767 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DDV---ISWN--- 282 (666)
Q Consensus 211 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~---~~~~--- 282 (666)
... ...-..+...|++++|...+++.++.. +.+..++..+..++.+.|++++|+..|++... |+. ..|.
T Consensus 270 ~~~-~~~G~~~~~~g~~~~A~~~l~~aL~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 270 FRA-RAQGLAAVDSGQGGKAIPELQQAVRAN--PKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred hHH-HHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 221 122344667899999999999999985 77889999999999999999999999987653 221 1122
Q ss_pred ---------HHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh
Q 047767 283 ---------SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353 (666)
Q Consensus 283 ---------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 353 (666)
.....+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...++.+.+.. |.+...+.
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~-P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~--p~~~~a~~ 423 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD-NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMD--PGNTNAVR 423 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHH
Confidence 12346778999999999999998763 2344566677888999999999999999999864 33667777
Q ss_pred HHHHHHHhcCChHHHHHHhccCCCCC------------cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHH
Q 047767 354 ALTDMYGKCNVIESSVAVFESAPGRS------------LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV-TLST 420 (666)
Q Consensus 354 ~l~~~~~~~~~~~~a~~~~~~~~~~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ 420 (666)
.+...|. .++.++|..+++.+.... ...+..+...+...|++++|+..|++..+. .|+.. .+..
T Consensus 424 ~L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~~~~~g~~~eA~~~~~~Al~~--~P~~~~~~~~ 500 (1157)
T PRK11447 424 GLANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEALENQGKWAQAAELQRQRLAL--DPGSVWLTYR 500 (1157)
T ss_pred HHHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHH
Confidence 8888875 467899999988765432 123445667788899999999999999875 55543 3334
Q ss_pred HhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCC----CHH---------HHH
Q 047767 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP----NVV---------CFT 487 (666)
Q Consensus 421 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~----~~~---------~~~ 487 (666)
+-.. +...|+.+.|...++.+.+.. +.+...+..+...+...++.++|...++.+... +.. .+.
T Consensus 501 LA~~--~~~~G~~~~A~~~l~~al~~~-P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l 577 (1157)
T PRK11447 501 LAQD--LRQAGQRSQADALMRRLAQQK-PNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVL 577 (1157)
T ss_pred HHHH--HHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHH
Confidence 4444 888999999999999988654 334444445555677889999999999988641 111 123
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHh
Q 047767 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGR 566 (666)
Q Consensus 488 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 566 (666)
.+...+...|+.++|..+++. .+++...+..+...+.+.|++++|+..|+++.+. .|+ ...+..++.+|..
T Consensus 578 ~~a~~l~~~G~~~eA~~~l~~-----~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~---~P~~~~a~~~la~~~~~ 649 (1157)
T PRK11447 578 ETANRLRDSGKEAEAEALLRQ-----QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTR---EPGNADARLGLIEVDIA 649 (1157)
T ss_pred HHHHHHHHCCCHHHHHHHHHh-----CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHH
Confidence 456678899999999999872 3445557778888999999999999999999965 555 8889999999999
Q ss_pred cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCc------chHHHHHHHHhhcCCchH
Q 047767 567 AGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF------AVYSQVSNFYSEIGEFEV 638 (666)
Q Consensus 567 ~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~ 638 (666)
.|++++|++.++.+. ..| +...+..+..++...|++++|.+.++++++..|+++ .++..++.++...|+.++
T Consensus 650 ~g~~~eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~~~~~~~~a~~~~~~a~~~~~~G~~~~ 729 (1157)
T PRK11447 650 QGDLAAARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKSQPPSMESALVLRDAARFEAQTGQPQQ 729 (1157)
T ss_pred CCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCccCCcchhhHHHHHHHHHHHHHcCCHHH
Confidence 999999999999876 344 566777788889999999999999999999877654 366778999999999999
Q ss_pred HHHHHHHHHh-CCCC
Q 047767 639 SMQIRETALA-RKLT 652 (666)
Q Consensus 639 A~~~~~~~~~-~~~~ 652 (666)
|++.|+++.. .|+.
T Consensus 730 A~~~y~~Al~~~~~~ 744 (1157)
T PRK11447 730 ALETYKDAMVASGIT 744 (1157)
T ss_pred HHHHHHHHHhhcCCC
Confidence 9999998853 3443
No 10
>PRK11447 cellulose synthase subunit BcsC; Provisional
Probab=99.97 E-value=2.3e-25 Score=250.35 Aligned_cols=588 Identities=10% Similarity=0.028 Sum_probs=431.1
Q ss_pred hHHHHhHhcCCChhhHHHHhhcCCC---CCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccH-----------
Q 047767 48 NRTIDDFVKSGHLNSAKKLFDEMPA---RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTF----------- 113 (666)
Q Consensus 48 ~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~----------- 113 (666)
-..+..+...++.+.|.+.++++.. .++..+..++..+.+.|+.++|.+.+++..+.. |+...+
T Consensus 32 l~q~~~~~~~~~~d~a~~~l~kl~~~~p~~p~~~~~~~~~~l~~g~~~~A~~~l~~l~~~~--P~~~~~~~~~~~~~~~~ 109 (1157)
T PRK11447 32 LEQVRLGEATHREDLVRQSLYRLELIDPNNPDVIAARFRLLLRQGDSDGAQKLLDRLSQLA--PDSNAYRSSRTTMLLST 109 (1157)
T ss_pred HHHHHHHHhhCChHHHHHHHHHHHccCCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhhC--CCChHHHHHHHHHHhcC
Confidence 3456667788999999999998763 367788889999999999999999999998865 443322
Q ss_pred ------HHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhh-hhHHHHHhHhcCChhHHHHhhccCCC--C-CcccHHHHH
Q 047767 114 ------SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYI-GSPLVDLYMRMGPSVRALDLFDELPE--R-NLATWNLML 183 (666)
Q Consensus 114 ------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~ll~~~~~~g~~~~a~~~~~~~~~--~-~~~~~~~li 183 (666)
..+.+.+...|++++|.+.++.+.+.+ +|+... ...........|+.++|.+.++.+.+ | +...+..+.
T Consensus 110 ~~~~~~l~~A~ll~~~g~~~eA~~~~~~~l~~~-p~~~~la~~y~~~~~~~~g~~~~A~~~L~~ll~~~P~~~~~~~~LA 188 (1157)
T PRK11447 110 PEGRQALQQARLLATTGRTEEALASYDKLFNGA-PPELDLAVEYWRLVAKLPAQRPEAINQLQRLNADYPGNTGLRNTLA 188 (1157)
T ss_pred CchhhHHHHHHHHHhCCCHHHHHHHHHHHccCC-CCChHHHHHHHHHHhhCCccHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 233456788999999999999998764 333321 11111222345999999999999876 3 345677888
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCC----------------CCH---hhHHHHHHHhcccCChHHHHHHHHHHHHhCCCC
Q 047767 184 RAFCELSRPDEVLRMYNKMKAEGVE----------------PNG---LSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVD 244 (666)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~m~~~~~~----------------p~~---~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 244 (666)
..+...|++++|+..++++.+.... ++. ..+...+..+-.......+...+....... ..
T Consensus 189 ~ll~~~g~~~eAl~~l~~~~~~~~~~~~aa~~~~~~l~~~~~~~~~~~~l~~~l~~~p~~~~~~~A~~~L~~~~~~~-~d 267 (1157)
T PRK11447 189 LLLFSSGRRDEGFAVLEQMAKSPAGRDAAAQLWYGQIKDMPVSDASVAALQKYLQVFSDGDSVAAARSQLAEQQKQL-AD 267 (1157)
T ss_pred HHHHccCCHHHHHHHHHHHhhCCCchHHHHHHHHHHHhccCCChhhHHHHHHHHHHCCCchHHHHHHHHHHHHHHhc-cC
Confidence 8899999999999999998654210 000 012222222233333445555555544432 22
Q ss_pred chHHHHHHHHHHHHccCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCCh-hhH----
Q 047767 245 VNIFVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI-RSF---- 316 (666)
Q Consensus 245 ~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~---- 316 (666)
|+.. .......+...|++++|+..|++.. +.+...+..+...+.+.|++++|...|++..+....... ..+
T Consensus 268 p~~~-~~~~G~~~~~~g~~~~A~~~l~~aL~~~P~~~~a~~~Lg~~~~~~g~~~eA~~~l~~Al~~~p~~~~~~~~~~ll 346 (1157)
T PRK11447 268 PAFR-ARAQGLAAVDSGQGGKAIPELQQAVRANPKDSEALGALGQAYSQQGDRARAVAQFEKALALDPHSSNRDKWESLL 346 (1157)
T ss_pred cchH-HHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCccchhHHHHHH
Confidence 3222 2344567788999999999998875 346788999999999999999999999998875432211 111
Q ss_pred --------HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC---CcccHHH
Q 047767 317 --------VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR---SLECCNS 385 (666)
Q Consensus 317 --------~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~ 385 (666)
......+.+.|++++|...++.+.+.. |.+...+..+..++...|++++|.+.|+++... +...+..
T Consensus 347 ~~~~~~~~~~~g~~~~~~g~~~eA~~~~~~Al~~~--P~~~~a~~~Lg~~~~~~g~~~eA~~~y~~aL~~~p~~~~a~~~ 424 (1157)
T PRK11447 347 KVNRYWLLIQQGDAALKANNLAQAERLYQQARQVD--NTDSYAVLGLGDVAMARKDYAAAERYYQQALRMDPGNTNAVRG 424 (1157)
T ss_pred HhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHH
Confidence 122345678999999999999999874 447788889999999999999999999987653 3345555
Q ss_pred HHHHHHhcCChhHHHHHHHHHHHcCCCC--------CHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHH
Q 047767 386 LMTSLLHSGNIKDAVEMFGFMVDEGIGL--------DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS 457 (666)
Q Consensus 386 li~~~~~~~~~~~a~~~~~~m~~~~~~p--------~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 457 (666)
+...|. .++.++|+..++.+....... ....+...-.. ....++.+.|...++...+.. +.+...+..
T Consensus 425 L~~l~~-~~~~~~A~~~l~~l~~~~~~~~~~~~~~l~~~~~~~~a~~--~~~~g~~~eA~~~~~~Al~~~-P~~~~~~~~ 500 (1157)
T PRK11447 425 LANLYR-QQSPEKALAFIASLSASQRRSIDDIERSLQNDRLAQQAEA--LENQGKWAQAAELQRQRLALD-PGSVWLTYR 500 (1157)
T ss_pred HHHHHH-hcCHHHHHHHHHhCCHHHHHHHHHHHHHhhhhHHHHHHHH--HHHCCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 666664 467899998887654321100 01112222233 567899999999999988765 335667778
Q ss_pred HHHHHHhhCCHHHHHHHhccCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH---------HHHHHH
Q 047767 458 LMDAYSRCGHIELSHQVFEKIPS--P-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV---------TFLCVL 525 (666)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~---------~~~~l~ 525 (666)
+...|.+.|++++|...++++.+ | +...+..+...+...++.++|+..++.+......++.. .+..+.
T Consensus 501 LA~~~~~~G~~~~A~~~l~~al~~~P~~~~~~~a~al~l~~~~~~~~Al~~l~~l~~~~~~~~~~~l~~~l~~~~~l~~a 580 (1157)
T PRK11447 501 LAQDLRQAGQRSQADALMRRLAQQKPNDPEQVYAYGLYLSGSDRDRAALAHLNTLPRAQWNSNIQELAQRLQSDQVLETA 580 (1157)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHhCCCHHHHHHHHHhCCchhcChhHHHHHHHHhhhHHHHHH
Confidence 89999999999999999998753 3 45555555566778899999999998865432222221 123456
Q ss_pred HHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChH
Q 047767 526 AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEI 603 (666)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~ 603 (666)
..+...|+.++|.++++. .+++...+..+...|.+.|++++|++.++++. ..| +...+..++..+...|+++
T Consensus 581 ~~l~~~G~~~eA~~~l~~------~p~~~~~~~~La~~~~~~g~~~~A~~~y~~al~~~P~~~~a~~~la~~~~~~g~~~ 654 (1157)
T PRK11447 581 NRLRDSGKEAEAEALLRQ------QPPSTRIDLTLADWAQQRGDYAAARAAYQRVLTREPGNADARLGLIEVDIAQGDLA 654 (1157)
T ss_pred HHHHHCCCHHHHHHHHHh------CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHH
Confidence 678899999999999872 24456778889999999999999999999866 445 6788999999999999999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 604 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
+|++.++++.+..|+++..+..++.++...|++++|.++++++.+...+
T Consensus 655 eA~~~l~~ll~~~p~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~~~ 703 (1157)
T PRK11447 655 AARAQLAKLPATANDSLNTQRRVALAWAALGDTAAAQRTFNRLIPQAKS 703 (1157)
T ss_pred HHHHHHHHHhccCCCChHHHHHHHHHHHhCCCHHHHHHHHHHHhhhCcc
Confidence 9999999999999999999999999999999999999999999876543
No 11
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=9.2e-23 Score=218.45 Aligned_cols=562 Identities=10% Similarity=-0.005 Sum_probs=398.1
Q ss_pred cCCChhhHHHHhhcCCC--C-CchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHH
Q 047767 56 KSGHLNSAKKLFDEMPA--R-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132 (666)
Q Consensus 56 ~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 132 (666)
..|++++|...|+...+ | +..++..+...|...|++++|+..+++..+.. |+...|..++..+ ++.++|..+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ld--P~n~~~~~~La~i---~~~~kA~~~ 130 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRH--PGDARLERSLAAI---PVEVKSVTT 130 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--cccHHHHHHHHHh---ccChhHHHH
Confidence 45999999999999863 3 56778899999999999999999999999864 5555555544333 899999999
Q ss_pred HHHHHHhcCCCchhhhhHHHHH--------hHhcCChhHHHHhhccCCCCC--cccHHHH-HHHHHhcCCchHHHHHHHH
Q 047767 133 HCRVLSLGFGLNLYIGSPLVDL--------YMRMGPSVRALDLFDELPERN--LATWNLM-LRAFCELSRPDEVLRMYNK 201 (666)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~ll~~--------~~~~g~~~~a~~~~~~~~~~~--~~~~~~l-i~~~~~~~~~~~a~~~~~~ 201 (666)
++++.+.. +-+..++..+... |.+.++..++++ .....|+ ....... .+.|.+.|+++.|++++.+
T Consensus 131 ye~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~--lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~ 207 (987)
T PRK09782 131 VEELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN--DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNE 207 (987)
T ss_pred HHHHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH--HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHH
Confidence 99999876 4456666666665 777766667776 3333343 4434444 8899999999999999999
Q ss_pred HHHcCCCCCHhhHHHHHHHhcc-cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCC-----
Q 047767 202 MKAEGVEPNGLSFCYMVRGCSI-GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV----- 275 (666)
Q Consensus 202 m~~~~~~p~~~t~~~ll~~~~~-~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----- 275 (666)
+.+.+.. +..-...+-.++.. .++ +.+..+++. . +..+..+...++..|.+.|+.++|.+++++++.
T Consensus 208 L~k~~pl-~~~~~~~L~~ay~q~l~~-~~a~al~~~----~-lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~ 280 (987)
T PRK09782 208 ARQQNTL-SAAERRQWFDVLLAGQLD-DRLLALQSQ----G-IFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTD 280 (987)
T ss_pred HHhcCCC-CHHHHHHHHHHHHHhhCH-HHHHHHhch----h-cccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCC
Confidence 9998633 33335555556665 355 677776442 2 557889999999999999999999999998862
Q ss_pred CChhhHH------------------------------HHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhc
Q 047767 276 DDVISWN------------------------------SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR 325 (666)
Q Consensus 276 ~~~~~~~------------------------------~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 325 (666)
|+..+|- .++..+.+++.++.+.++. ...|.......-..+...
T Consensus 281 ~~~~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~~~~~~r~~~~~~ 354 (987)
T PRK09782 281 AQEKSWLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLL------ATLPANEMLEERYAVSVA 354 (987)
T ss_pred CccHHHHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHh------cCCCcchHHHHHHhhccc
Confidence 2222211 1244555666666544431 134444332111222223
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC--C----cccHHHHHHHHHhcCC---h
Q 047767 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR--S----LECCNSLMTSLLHSGN---I 396 (666)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~----~~~~~~li~~~~~~~~---~ 396 (666)
.+...++...+..+.+.. |.+......+.-...+.|+.++|..+|+..... + ....+-++..|.+.+. .
T Consensus 355 ~~~~~~~~~~~~~~y~~~--~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~ 432 (987)
T PRK09782 355 TRNKAEALRLARLLYQQE--PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATP 432 (987)
T ss_pred cCchhHHHHHHHHHHhcC--CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccch
Confidence 456666666677666643 336777777788888899999999998876552 1 2233456677777665 3
Q ss_pred hHHHHH------------H----------HHHHHc-CCCCC---HHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCC
Q 047767 397 KDAVEM------------F----------GFMVDE-GIGLD---EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES 450 (666)
Q Consensus 397 ~~a~~~------------~----------~~m~~~-~~~p~---~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~ 450 (666)
.++..+ . ...... +..|+ ...+..+-. |...+..+.|...+....... |
T Consensus 433 ~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~---~l~~~~~~eAi~a~~~Al~~~--P 507 (987)
T PRK09782 433 AKVAILSKPLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAK---CYRDTLPGVALYAWLQAEQRQ--P 507 (987)
T ss_pred HHHHHhccccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHH---HHHhCCcHHHHHHHHHHHHhC--C
Confidence 344333 1 111111 12233 233333222 333467777888776666554 4
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHH
Q 047767 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAG 527 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~ 527 (666)
+......+...+...|++++|...|+++.. |+...+..+..++.+.|++++|...+++..+. .|+.. .+..+...
T Consensus 508 d~~~~L~lA~al~~~Gr~eeAi~~~rka~~~~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l--~P~~~~l~~~La~~ 585 (987)
T PRK09782 508 DAWQHRAVAYQAYQVEDYATALAAWQKISLHDMSNEDLLAAANTAQAAGNGAARDRWLQQAEQR--GLGDNALYWWLHAQ 585 (987)
T ss_pred chHHHHHHHHHHHHCCCHHHHHHHHHHHhccCCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCccHHHHHHHHHH
Confidence 444433445555689999999999987663 45556667778889999999999999999884 45443 34444455
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIG 605 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 605 (666)
+...|++++|...+++..+. .|+...+..+..++.+.|++++|+..+++.. ..| +...+..+..++...|++++|
T Consensus 586 l~~~Gr~~eAl~~~~~AL~l---~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l~Pd~~~a~~nLG~aL~~~G~~eeA 662 (987)
T PRK09782 586 RYIPGQPELALNDLTRSLNI---APSANAYVARATIYRQRHNVPAAVSDLRAALELEPNNSNYQAALGYALWDSGDIAQS 662 (987)
T ss_pred HHhCCCHHHHHHHHHHHHHh---CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 66779999999999999854 6788889999999999999999999998765 455 667888888889999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+..++++++.+|+++.++.+++.++...|++++|+..+++..+..
T Consensus 663 i~~l~~AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~ 707 (987)
T PRK09782 663 REMLERAHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDI 707 (987)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999887644
No 12
>PRK09782 bacteriophage N4 receptor, outer membrane subunit; Provisional
Probab=99.95 E-value=1.3e-22 Score=217.42 Aligned_cols=603 Identities=9% Similarity=-0.021 Sum_probs=404.7
Q ss_pred cCCCccchhhhhhcccCCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCC--CCchhHHHHHHHhhcCCChhhHHHHHH
Q 047767 22 SIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA--RDMVTYNLLISGCGKFRHPKQALYLYD 99 (666)
Q Consensus 22 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~ll~~~~~~~~~~~a~~~~~ 99 (666)
..|+++.|...++.+..-.|-+..++..|...|.+.|++++|+..+++..+ |+-..|..++..+ +++++|..+|+
T Consensus 56 ~~Gd~~~A~~~l~~Al~~dP~n~~~~~~LA~~yl~~g~~~~A~~~~~kAv~ldP~n~~~~~~La~i---~~~~kA~~~ye 132 (987)
T PRK09782 56 KNNDEATAIREFEYIHQQVPDNIPLTLYLAEAYRHFGHDDRARLLLEDQLKRHPGDARLERSLAAI---PVEVKSVTTVE 132 (987)
T ss_pred hCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCcccHHHHHHHHHh---ccChhHHHHHH
Confidence 347888888888888744445577778888888888888888888888763 4334444444333 77788888888
Q ss_pred HHHhCCCCCCcccHHHHHHHH-----HcCCChHHHHHHHHHHHHhcCCCchhhhhHH-HHHhHhcCChhHHHHhhccCCC
Q 047767 100 EMVSHGIKESASTFSSVLSVC-----SNAGFYTEGIQIHCRVLSLGFGLNLYIGSPL-VDLYMRMGPSVRALDLFDELPE 173 (666)
Q Consensus 100 ~m~~~~~~~~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l-l~~~~~~g~~~~a~~~~~~~~~ 173 (666)
++.... +-+...+..+.... ....+.++|.+.++ .......|+..+.... ...|.+.|++++|++.++.+.+
T Consensus 133 ~l~~~~-P~n~~~~~~la~~~~~~~~l~y~q~eqAl~AL~-lr~~~~~~~~~vL~L~~~rlY~~l~dw~~Ai~lL~~L~k 210 (987)
T PRK09782 133 ELLAQQ-KACDAVPTLRCRSEVGQNALRLAQLPVARAQLN-DATFAASPEGKTLRTDLLQRAIYLKQWSQADTLYNEARQ 210 (987)
T ss_pred HHHHhC-CCChhHHHHHHHHhhccchhhhhhHHHHHHHHH-HhhhCCCCCcHHHHHHHHHHHHHHhCHHHHHHHHHHHHh
Confidence 887753 22344444444430 11223355555555 3333333344444444 6777777777777777777765
Q ss_pred CC---cccHHHHHHHHHh-cCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHH-
Q 047767 174 RN---LATWNLMLRAFCE-LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF- 248 (666)
Q Consensus 174 ~~---~~~~~~li~~~~~-~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~- 248 (666)
.+ ......|-..|.. .++ +.+..+++. .++-+......+...+...|+.++|.++++.+.....-.|...
T Consensus 211 ~~pl~~~~~~~L~~ay~q~l~~-~~a~al~~~----~lk~d~~l~~ala~~yi~~G~~~~A~~~L~~~~~~~~~~~~~~~ 285 (987)
T PRK09782 211 QNTLSAAERRQWFDVLLAGQLD-DRLLALQSQ----GIFTDPQSRITYATALAYRGEKARLQHYLIENKPLFTTDAQEKS 285 (987)
T ss_pred cCCCCHHHHHHHHHHHHHhhCH-HHHHHHhch----hcccCHHHHHHHHHHHHHCCCHHHHHHHHHhCcccccCCCccHH
Confidence 22 2224444455555 255 555555432 2334666677777777777777777777766543320111111
Q ss_pred -----------------------------HHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHH--HcCCChHHH
Q 047767 249 -----------------------------VANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIY--ADYDLIFDA 297 (666)
Q Consensus 249 -----------------------------~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~--~~~g~~~~a 297 (666)
..-.++..+.+.++++.++++...-+ .+.. ..+... ...+...++
T Consensus 286 ~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~---~~~r~~~~~~~~~~~~~ 361 (987)
T PRK09782 286 WLYLLSKYSANPVQALANYTVQFADNRQYVVGATLPVLLKEGQYDAAQKLLATLP-ANEM---LEERYAVSVATRNKAEA 361 (987)
T ss_pred HHHHHHhccCchhhhccchhhhhHHHHHHHHHHHHHHHHhccHHHHHHHHhcCCC-cchH---HHHHHhhccccCchhHH
Confidence 11223666777888887777754322 2221 222222 233666777
Q ss_pred HHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHh-CCCCCchhHHhHHHHHHHhcCCh---HHHHHH--
Q 047767 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-GFDHGSVHVQSALTDMYGKCNVI---ESSVAV-- 371 (666)
Q Consensus 298 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~-- 371 (666)
...++.|.+.. +-+......+---....|+.++|.+++...... +-...+..+...++..|.+.+.+ .++..+
T Consensus 362 ~~~~~~~y~~~-~~~~~~l~q~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~ 440 (987)
T PRK09782 362 LRLARLLYQQE-PANLTRLDQLTWQLMQNGQSREAADLLLQRYPFQGDARLSQTLMARLASLLESHPYLATPAKVAILSK 440 (987)
T ss_pred HHHHHHHHhcC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHhcCCCcccccCHHHHHHHHHHHHhCCcccchHHHHHhcc
Confidence 77777776541 123333444444456788899999999888773 21111455666788888887663 233222
Q ss_pred -----------------------hccCCC---C--CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 047767 372 -----------------------FESAPG---R--SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423 (666)
Q Consensus 372 -----------------------~~~~~~---~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 423 (666)
+..... . +...|..+..++.. ++.++|+..+.+.... .|+......+..
T Consensus 441 ~~~~~~~~~~~~~~~~~~~~~~~~~~al~~~p~~~~~~a~~~LG~~l~~-~~~~eAi~a~~~Al~~--~Pd~~~~L~lA~ 517 (987)
T PRK09782 441 PLPLAEQRQWQSQLPGIADNCPAIVRLLGDMSPSYDAAAWNRLAKCYRD-TLPGVALYAWLQAEQR--QPDAWQHRAVAY 517 (987)
T ss_pred ccccchhHHHHhhhhhhhhhHHHHHHhcccCCCCCCHHHHHHHHHHHHh-CCcHHHHHHHHHHHHh--CCchHHHHHHHH
Confidence 111111 1 34456666666666 7889999988887765 466554322222
Q ss_pred hhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCC---HHHHHHHHHHHHHcCChh
Q 047767 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN---VVCFTSIMNGYSRNGMGR 500 (666)
Q Consensus 424 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~ 500 (666)
. ....|+.+.|...++.+... +|+...+..+...+.+.|++++|.+.++...+.+ ...+..+.......|+++
T Consensus 518 a--l~~~Gr~eeAi~~~rka~~~--~p~~~a~~~la~all~~Gd~~eA~~~l~qAL~l~P~~~~l~~~La~~l~~~Gr~~ 593 (987)
T PRK09782 518 Q--AYQVEDYATALAAWQKISLH--DMSNEDLLAAANTAQAAGNGAARDRWLQQAEQRGLGDNALYWWLHAQRYIPGQPE 593 (987)
T ss_pred H--HHHCCCHHHHHHHHHHHhcc--CCCcHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHhCCCHH
Confidence 2 56899999999999887554 3444455667778899999999999998877532 223333333444569999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 047767 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQ 579 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (666)
+|...+++..+ ..|+...+..+..++.+.|++++|...+++.... .|+ ...+..+..++...|++++|++.+++
T Consensus 594 eAl~~~~~AL~--l~P~~~a~~~LA~~l~~lG~~deA~~~l~~AL~l---~Pd~~~a~~nLG~aL~~~G~~eeAi~~l~~ 668 (987)
T PRK09782 594 LALNDLTRSLN--IAPSANAYVARATIYRQRHNVPAAVSDLRAALEL---EPNNSNYQAALGYALWDSGDIAQSREMLER 668 (987)
T ss_pred HHHHHHHHHHH--hCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 99999999998 6788778999999999999999999999999864 676 77888899999999999999999997
Q ss_pred CC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 580 TP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 580 ~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
.. ..| +...+..+..++...|++++|+..++++++.+|+++.+....+++..+..++..|.+.++..-...+
T Consensus 669 AL~l~P~~~~a~~nLA~al~~lGd~~eA~~~l~~Al~l~P~~a~i~~~~g~~~~~~~~~~~a~~~~~r~~~~~~ 742 (987)
T PRK09782 669 AHKGLPDDPALIRQLAYVNQRLDDMAATQHYARLVIDDIDNQALITPLTPEQNQQRFNFRRLHEEVGRRWTFSF 742 (987)
T ss_pred HHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCchhhhhhhHHHHHHHHHHHHHHHHHHHhhcCc
Confidence 65 455 7788999999999999999999999999999999999999999999999999999998876654433
No 13
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.90 E-value=3.8e-21 Score=182.45 Aligned_cols=377 Identities=13% Similarity=0.129 Sum_probs=259.4
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-CHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 047767 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP-NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256 (666)
Q Consensus 178 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (666)
+|..+...+-..|++++|+.+++.+.+. +| ....|..+..++...|+.+.|.+.|.+.++.+ |......+.+...
T Consensus 118 ~ysn~aN~~kerg~~~~al~~y~~aiel--~p~fida~inla~al~~~~~~~~a~~~~~~alqln--P~l~ca~s~lgnL 193 (966)
T KOG4626|consen 118 AYSNLANILKERGQLQDALALYRAAIEL--KPKFIDAYINLAAALVTQGDLELAVQCFFEALQLN--PDLYCARSDLGNL 193 (966)
T ss_pred HHHHHHHHHHHhchHHHHHHHHHHHHhc--CchhhHHHhhHHHHHHhcCCCcccHHHHHHHHhcC--cchhhhhcchhHH
Confidence 4555555555555555555555555543 23 23344444455555555555555555555443 2222233334444
Q ss_pred HHccCChHHHHHHhccCCC--C-ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHH
Q 047767 257 YSACGSLIEAKKSFDFIPV--D-DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333 (666)
Q Consensus 257 ~~~~~~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 333 (666)
+...|++.+|...+.+... | =.+.|+.|...+-.+|+...|+..|++... +.|+
T Consensus 194 lka~Grl~ea~~cYlkAi~~qp~fAiawsnLg~~f~~~Gei~~aiq~y~eAvk--ldP~--------------------- 250 (966)
T KOG4626|consen 194 LKAEGRLEEAKACYLKAIETQPCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVK--LDPN--------------------- 250 (966)
T ss_pred HHhhcccchhHHHHHHHHhhCCceeeeehhcchHHhhcchHHHHHHHHHHhhc--CCCc---------------------
Confidence 4445555555544443321 1 134566666666666666666666666543 1222
Q ss_pred HHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 047767 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG--R-SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410 (666)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 410 (666)
-...|-.|...|...+.++.|...+.+... | ..+.+..+...|-.+|..+-|++.|++..+.
T Consensus 251 --------------f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~lrpn~A~a~gNla~iYyeqG~ldlAI~~Ykral~~- 315 (966)
T KOG4626|consen 251 --------------FLDAYINLGNVYKEARIFDRAVSCYLRALNLRPNHAVAHGNLACIYYEQGLLDLAIDTYKRALEL- 315 (966)
T ss_pred --------------chHHHhhHHHHHHHHhcchHHHHHHHHHHhcCCcchhhccceEEEEeccccHHHHHHHHHHHHhc-
Confidence 344555566666666666666665554322 1 3344555555666777777777777776653
Q ss_pred CCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHH
Q 047767 411 IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFT 487 (666)
Q Consensus 411 ~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~ 487 (666)
.|+ =...|+.|..++-..|+..+|...+.+... ....+.+
T Consensus 316 -~P~------------------------------------F~~Ay~NlanALkd~G~V~ea~~cYnkaL~l~p~hadam~ 358 (966)
T KOG4626|consen 316 -QPN------------------------------------FPDAYNNLANALKDKGSVTEAVDCYNKALRLCPNHADAMN 358 (966)
T ss_pred -CCC------------------------------------chHHHhHHHHHHHhccchHHHHHHHHHHHHhCCccHHHHH
Confidence 222 234567777778888999999998887764 4567888
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHH
Q 047767 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLG 565 (666)
Q Consensus 488 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~ 565 (666)
.|...|...|.+++|..+|....+ +.|.-. .++.|...|...|++++|+..|++.. .++|+ ...|+.+...|-
T Consensus 359 NLgni~~E~~~~e~A~~ly~~al~--v~p~~aaa~nNLa~i~kqqgnl~~Ai~~Ykeal---rI~P~fAda~~NmGnt~k 433 (966)
T KOG4626|consen 359 NLGNIYREQGKIEEATRLYLKALE--VFPEFAAAHNNLASIYKQQGNLDDAIMCYKEAL---RIKPTFADALSNMGNTYK 433 (966)
T ss_pred HHHHHHHHhccchHHHHHHHHHHh--hChhhhhhhhhHHHHHHhcccHHHHHHHHHHHH---hcCchHHHHHHhcchHHH
Confidence 999999999999999999999988 778765 78999999999999999999999998 67999 889999999999
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchH
Q 047767 566 RAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638 (666)
Q Consensus 566 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 638 (666)
..|+...|+..+.+.. .+| -...++.|...|...|+..+|+..|+.+++++|+.|.+|-+|+.++.--.+|.+
T Consensus 434 e~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~aLklkPDfpdA~cNllh~lq~vcdw~D 508 (966)
T KOG4626|consen 434 EMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRTALKLKPDFPDAYCNLLHCLQIVCDWTD 508 (966)
T ss_pred HhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHHHHccCCCCchhhhHHHHHHHHHhcccc
Confidence 9999999999998654 777 457889999999999999999999999999999999999999887765555444
No 14
>KOG4626 consensus O-linked N-acetylglucosamine transferase OGT [Carbohydrate transport and metabolism; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=99.89 E-value=3.1e-20 Score=176.41 Aligned_cols=420 Identities=13% Similarity=0.090 Sum_probs=286.4
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc
Q 047767 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA 259 (666)
Q Consensus 180 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 259 (666)
..|..-..+.|++.+|.+.-...-+.+ +.+....-.+-..+....+++...+--....+.. +.-..+|..+.+.+-.
T Consensus 52 l~lah~~yq~gd~~~a~~h~nmv~~~d-~t~~~~llll~ai~~q~~r~d~s~a~~~~a~r~~--~q~ae~ysn~aN~~ke 128 (966)
T KOG4626|consen 52 LELAHRLYQGGDYKQAEKHCNMVGQED-PTNTERLLLLSAIFFQGSRLDKSSAGSLLAIRKN--PQGAEAYSNLANILKE 128 (966)
T ss_pred HHHHHHHHhccCHHHHHHHHhHhhccC-CCcccceeeehhhhhcccchhhhhhhhhhhhhcc--chHHHHHHHHHHHHHH
Confidence 334444555666666665443332221 1111111111122333333443333333333332 3444555556666666
Q ss_pred cCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHh-ccCChhhHHHH
Q 047767 260 CGSLIEAKKSFDFIPV---DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS-RTGNVYFGKQI 335 (666)
Q Consensus 260 ~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~~~~~~a~~~ 335 (666)
.|++++|...++.+.+ ..+..|..+..++...|+.+.|...|.+.++ +.|+.....+-+.-+. ..|.+++|..-
T Consensus 129 rg~~~~al~~y~~aiel~p~fida~inla~al~~~~~~~~a~~~~~~alq--lnP~l~ca~s~lgnLlka~Grl~ea~~c 206 (966)
T KOG4626|consen 129 RGQLQDALALYRAAIELKPKFIDAYINLAAALVTQGDLELAVQCFFEALQ--LNPDLYCARSDLGNLLKAEGRLEEAKAC 206 (966)
T ss_pred hchHHHHHHHHHHHHhcCchhhHHHhhHHHHHHhcCCCcccHHHHHHHHh--cCcchhhhhcchhHHHHhhcccchhHHH
Confidence 6666666666555432 2345666666666666666666666666554 3444443333333222 24555555555
Q ss_pred HHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCC
Q 047767 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE---CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG 412 (666)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 412 (666)
+.++++.. |.-..++..|...+-..|+...|+..|++...-|+. .|-.|...|...+.+++|+..|.+.... .
T Consensus 207 YlkAi~~q--p~fAiawsnLg~~f~~~Gei~~aiq~y~eAvkldP~f~dAYiNLGnV~ke~~~~d~Avs~Y~rAl~l--r 282 (966)
T KOG4626|consen 207 YLKAIETQ--PCFAIAWSNLGCVFNAQGEIWLAIQHYEEAVKLDPNFLDAYINLGNVYKEARIFDRAVSCYLRALNL--R 282 (966)
T ss_pred HHHHHhhC--CceeeeehhcchHHhhcchHHHHHHHHHHhhcCCCcchHHHhhHHHHHHHHhcchHHHHHHHHHHhc--C
Confidence 55554432 223455666666666777777777777766554332 4556666666666677776666655442 3
Q ss_pred CCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CC-HHHHHHH
Q 047767 413 LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PN-VVCFTSI 489 (666)
Q Consensus 413 p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~l 489 (666)
|+ ....+..+...|-..|.++.|+..+++..+ |+ ...|+.|
T Consensus 283 pn------------------------------------~A~a~gNla~iYyeqG~ldlAI~~Ykral~~~P~F~~Ay~Nl 326 (966)
T KOG4626|consen 283 PN------------------------------------HAVAHGNLACIYYEQGLLDLAIDTYKRALELQPNFPDAYNNL 326 (966)
T ss_pred Cc------------------------------------chhhccceEEEEeccccHHHHHHHHHHHHhcCCCchHHHhHH
Confidence 33 223333444557788999999999998874 54 6789999
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhc
Q 047767 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRA 567 (666)
Q Consensus 490 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 567 (666)
..++...|++.+|...+.+... ..|+.. ..+.|...+...|.+++|..+|.... .+.|. ....+.|...|-.+
T Consensus 327 anALkd~G~V~ea~~cYnkaL~--l~p~hadam~NLgni~~E~~~~e~A~~ly~~al---~v~p~~aaa~nNLa~i~kqq 401 (966)
T KOG4626|consen 327 ANALKDKGSVTEAVDCYNKALR--LCPNHADAMNNLGNIYREQGKIEEATRLYLKAL---EVFPEFAAAHNNLASIYKQQ 401 (966)
T ss_pred HHHHHhccchHHHHHHHHHHHH--hCCccHHHHHHHHHHHHHhccchHHHHHHHHHH---hhChhhhhhhhhHHHHHHhc
Confidence 9999999999999999999988 677765 78889999999999999999999987 45787 78899999999999
Q ss_pred CChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHH
Q 047767 568 GILDKAEELLQQTP-GGGD-CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645 (666)
Q Consensus 568 g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 645 (666)
|++++|+..+++.. ++|. ...|+.++..|-..|+.+.|++.+.+++..+|.-+.++.+|+.+|...|+..+|++.|+.
T Consensus 402 gnl~~Ai~~YkealrI~P~fAda~~NmGnt~ke~g~v~~A~q~y~rAI~~nPt~AeAhsNLasi~kDsGni~~AI~sY~~ 481 (966)
T KOG4626|consen 402 GNLDDAIMCYKEALRIKPTFADALSNMGNTYKEMGDVSAAIQCYTRAIQINPTFAEAHSNLASIYKDSGNIPEAIQSYRT 481 (966)
T ss_pred ccHHHHHHHHHHHHhcCchHHHHHHhcchHHHHhhhHHHHHHHHHHHHhcCcHHHHHHhhHHHHhhccCCcHHHHHHHHH
Confidence 99999999998765 7784 579999999999999999999999999999999999999999999999999999999998
Q ss_pred HHhC
Q 047767 646 ALAR 649 (666)
Q Consensus 646 ~~~~ 649 (666)
....
T Consensus 482 aLkl 485 (966)
T KOG4626|consen 482 ALKL 485 (966)
T ss_pred HHcc
Confidence 7653
No 15
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.88 E-value=6.5e-18 Score=169.44 Aligned_cols=578 Identities=13% Similarity=0.101 Sum_probs=402.9
Q ss_pred hhhHHHHhhcCCCCCch-hHHHHHHH--hhcCCChhhHHHHHHHHHhCC--CCCCcccHHHHHHHHHcCCChHHHHHHHH
Q 047767 60 LNSAKKLFDEMPARDMV-TYNLLISG--CGKFRHPKQALYLYDEMVSHG--IKESASTFSSVLSVCSNAGFYTEGIQIHC 134 (666)
Q Consensus 60 ~~~A~~~~~~~~~~~~~-~~~~ll~~--~~~~~~~~~a~~~~~~m~~~~--~~~~~~~~~~ll~~~~~~~~~~~a~~~~~ 134 (666)
.+.|...|....+.+.. ..-.+..+ ....+++..|+.+|+...... .+||+.. .+-.++.+.|+.+.|...|.
T Consensus 146 ~~~A~a~F~~Vl~~sp~Nil~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rI--gig~Cf~kl~~~~~a~~a~~ 223 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQSPDNILALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRI--GIGHCFWKLGMSEKALLAFE 223 (1018)
T ss_pred HHHHHHHHHHHHhhCCcchHHHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccc--hhhhHHHhccchhhHHHHHH
Confidence 68888888888643222 12223333 345789999999999976543 3444433 34466778999999999999
Q ss_pred HHHHhcCCCchhhhhHHHHHhHhcCC---hhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCC
Q 047767 135 RVLSLGFGLNLYIGSPLVDLYMRMGP---SVRALDLFDELPE---RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE 208 (666)
Q Consensus 135 ~~~~~~~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~ 208 (666)
+..+.+. -++.++-.|...-....+ +..+..++...-. .+++..+.|...|...|+++.++.+...+......
T Consensus 224 ralqLdp-~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~~ 302 (1018)
T KOG2002|consen 224 RALQLDP-TCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKENNENPVALNHLANHFYFKKDYERVWHLAEHAIKNTEN 302 (1018)
T ss_pred HHHhcCh-hhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhcCCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhhh
Confidence 9987652 333333333322222333 3344444443322 57788899999999999999999999888765311
Q ss_pred --CCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCch-HHHHHHHHHHHHccCChHHHHHHhccCCC---CChhhHH
Q 047767 209 --PNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN-IFVANALVDFYSACGSLIEAKKSFDFIPV---DDVISWN 282 (666)
Q Consensus 209 --p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~ 282 (666)
.-+..|-.+-+++-..|++++|...|-+..+.. +.+ ...+-.+...|.+.|+++.+...|+.+.. .+..+..
T Consensus 303 ~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~--~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~~p~~~etm~ 380 (1018)
T KOG2002|consen 303 KSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKAD--NDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQLPNNYETMK 380 (1018)
T ss_pred hHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccC--CCCccccccchhHHHHHhchHHHHHHHHHHHHHhCcchHHHHH
Confidence 123457788889999999999999999988875 333 55566788899999999999999988853 3455666
Q ss_pred HHHHHHHcCC----ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHH----HHhCCCCCchhHHhH
Q 047767 283 SIVSIYADYD----LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYV----TKLGFDHGSVHVQSA 354 (666)
Q Consensus 283 ~li~~~~~~g----~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~----~~~~~~~~~~~~~~~ 354 (666)
.|...|...+ ..+.|..++.+....- +.|...|..+-..+.. ++.......+..+ ...+..+ .+.+.+.
T Consensus 381 iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~-~~d~~a~l~laql~e~-~d~~~sL~~~~~A~d~L~~~~~~i-p~E~LNN 457 (1018)
T KOG2002|consen 381 ILGCLYAHSAKKQEKRDKASNVLGKVLEQT-PVDSEAWLELAQLLEQ-TDPWASLDAYGNALDILESKGKQI-PPEVLNN 457 (1018)
T ss_pred HHHhHHHhhhhhhHHHHHHHHHHHHHHhcc-cccHHHHHHHHHHHHh-cChHHHHHHHHHHHHHHHHcCCCC-CHHHHHh
Confidence 6666666664 4566777766665532 3344455555444444 3443445555544 3455555 8899999
Q ss_pred HHHHHHhcCChHHHHHHhccCCCC-------Ccc------cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047767 355 LTDMYGKCNVIESSVAVFESAPGR-------SLE------CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421 (666)
Q Consensus 355 l~~~~~~~~~~~~a~~~~~~~~~~-------~~~------~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 421 (666)
+...+...|.+..|...|+..... +.. +--.+...+-..++++.|.++|..+... .|+-+....-
T Consensus 458 vaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlarl~E~l~~~~~A~e~Yk~Ilke--hp~YId~ylR 535 (1018)
T KOG2002|consen 458 VASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLARLLEELHDTEVAEEMYKSILKE--HPGYIDAYLR 535 (1018)
T ss_pred HHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHHHHHhhhhhhHHHHHHHHHHHH--CchhHHHHHH
Confidence 999999999999999999876443 221 1223445566678999999999999886 5665443333
Q ss_pred hchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----CCHHHHHHHHHHHHH-
Q 047767 422 LKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----PNVVCFTSIMNGYSR- 495 (666)
Q Consensus 422 l~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~- 495 (666)
+.++ ....++...|...+....... ..++..++-+...|.+...+..|..-|..+.+ +|+.+.-+|.+.|.+
T Consensus 536 l~~m-a~~k~~~~ea~~~lk~~l~~d-~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~ 613 (1018)
T KOG2002|consen 536 LGCM-ARDKNNLYEASLLLKDALNID-SSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQA 613 (1018)
T ss_pred hhHH-HHhccCcHHHHHHHHHHHhcc-cCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHH
Confidence 3221 444566667777666655432 23334444456678888888888776655542 566666666665543
Q ss_pred -----------cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHH
Q 047767 496 -----------NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564 (666)
Q Consensus 496 -----------~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 564 (666)
.+..++|+++|++..... +-|...-+.+.-.++..|++..|..+|.++++. ..-...+|-.++++|
T Consensus 614 l~~~~rn~ek~kk~~~KAlq~y~kvL~~d-pkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa--~~~~~dv~lNlah~~ 690 (1018)
T KOG2002|consen 614 LHNPSRNPEKEKKHQEKALQLYGKVLRND-PKNMYAANGIGIVLAEKGRFSEARDIFSQVREA--TSDFEDVWLNLAHCY 690 (1018)
T ss_pred hcccccChHHHHHHHHHHHHHHHHHHhcC-cchhhhccchhhhhhhccCchHHHHHHHHHHHH--HhhCCceeeeHHHHH
Confidence 235678899999888732 335567788888899999999999999999986 234577889999999
Q ss_pred HhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc-------
Q 047767 565 GRAGILDKAEELLQQTP----GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI------- 633 (666)
Q Consensus 565 ~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~------- 633 (666)
..+|++..|+++|+... .+.+....+.|.+++...|.+.+|.+.+..+....|.++.+..+++.+..+.
T Consensus 691 ~e~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~p~~~~v~FN~a~v~kkla~s~lr~ 770 (1018)
T KOG2002|consen 691 VEQGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLAPSNTSVKFNLALVLKKLAESILRL 770 (1018)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCCccchHHhHHHHHHHHHHHHHHhc
Confidence 99999999999998654 3447888999999999999999999999999999999999988877665432
Q ss_pred ------------CCchHHHHHHHHHHhCCCC
Q 047767 634 ------------GEFEVSMQIRETALARKLT 652 (666)
Q Consensus 634 ------------g~~~~A~~~~~~~~~~~~~ 652 (666)
+..+.|.++|+.+...+-+
T Consensus 771 ~k~t~eev~~a~~~le~a~r~F~~ls~~~d~ 801 (1018)
T KOG2002|consen 771 EKRTLEEVLEAVKELEEARRLFTELSKNGDK 801 (1018)
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3456777788877765544
No 16
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.86 E-value=2.9e-18 Score=181.42 Aligned_cols=419 Identities=11% Similarity=-0.010 Sum_probs=267.4
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 047767 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258 (666)
Q Consensus 179 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (666)
+......+.+.|+++.|+..|++..+ +.|+...|..+..++...|++++|...++..++.+ +.+...+..+..+|.
T Consensus 130 ~k~~G~~~~~~~~~~~Ai~~y~~al~--~~p~~~~~~n~a~~~~~l~~~~~Ai~~~~~al~l~--p~~~~a~~~~a~a~~ 205 (615)
T TIGR00990 130 LKEKGNKAYRNKDFNKAIKLYSKAIE--CKPDPVYYSNRAACHNALGDWEKVVEDTTAALELD--PDYSKALNRRANAYD 205 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHhCCHHHHHHHHHHHHHcC--CCCHHHHHHHHHHHH
Confidence 44556677788888999888888776 46777778778778888888888888888888875 666777777888888
Q ss_pred ccCChHHHHHHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHH
Q 047767 259 ACGSLIEAKKSFDFIPVD---DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQI 335 (666)
Q Consensus 259 ~~~~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 335 (666)
..|++++|...|...... +......++..+.. ..+........... .++...... +..+........
T Consensus 206 ~lg~~~eA~~~~~~~~~~~~~~~~~~~~~~~~~l~----~~a~~~~~~~l~~~-~~~~~~~~~-~~~~~~~~~~~~---- 275 (615)
T TIGR00990 206 GLGKYADALLDLTASCIIDGFRNEQSAQAVERLLK----KFAESKAKEILETK-PENLPSVTF-VGNYLQSFRPKP---- 275 (615)
T ss_pred HcCCHHHHHHHHHHHHHhCCCccHHHHHHHHHHHH----HHHHHHHHHHHhcC-CCCCCCHHH-HHHHHHHccCCc----
Confidence 888888887665433211 11111111111111 11112222221111 011111111 111110000000
Q ss_pred HHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCc---ccHHHHHHH---HHhcCChhHHHHHHHHHHHc
Q 047767 336 HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSL---ECCNSLMTS---LLHSGNIKDAVEMFGFMVDE 409 (666)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~---~~~~~~~~~a~~~~~~m~~~ 409 (666)
...-+......+. ..+..+... ....+++++|+..|+...+.
T Consensus 276 --------------------------------~~~~~~~~~~~~~~~~~~~~~l~~~~~e~~~~~~y~~A~~~~~~al~~ 323 (615)
T TIGR00990 276 --------------------------------RPAGLEDSNELDEETGNGQLQLGLKSPESKADESYEEAARAFEKALDL 323 (615)
T ss_pred --------------------------------chhhhhcccccccccccchHHHHHHHHHhhhhhhHHHHHHHHHHHHhc
Confidence 0000000000000 001111100 01235666677777766655
Q ss_pred C-CCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHH
Q 047767 410 G-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVC 485 (666)
Q Consensus 410 ~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~ 485 (666)
+ ..|+.......+ +.+....|+++.|...++...+.. +.....+..+...+...|++++|...|++..+ .+...
T Consensus 324 ~~~~~~~a~a~~~l-g~~~~~~g~~~eA~~~~~kal~l~-P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~~p~~~~~ 401 (615)
T TIGR00990 324 GKLGEKEAIALNLR-GTFKCLKGKHLEALADLSKSIELD-PRVTQSYIKRASMNLELGDPDKAEEDFDKALKLNSEDPDI 401 (615)
T ss_pred CCCChhhHHHHHHH-HHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHH
Confidence 4 233322221111 111455667777777766665543 22345666777788899999999999987763 45788
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDM 563 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 563 (666)
|..+...+...|++++|+..|++..+ +.|+. ..+..+...+.+.|++++|+..+++.... .|+ ...++.+..+
T Consensus 402 ~~~lg~~~~~~g~~~~A~~~~~kal~--l~P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~ 476 (615)
T TIGR00990 402 YYHRAQLHFIKGEFAQAGKDYQKSID--LDPDFIFSHIQLGVTQYKEGSIASSMATFRRCKKN---FPEAPDVYNYYGEL 476 (615)
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHH--cCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCChHHHHHHHHH
Confidence 88999999999999999999999998 56654 46777888899999999999999999864 455 7889999999
Q ss_pred HHhcCChHHHHHHHHhCC-CCCC-HH-------HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC
Q 047767 564 LGRAGILDKAEELLQQTP-GGGD-CM-------MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~-~~~~-~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 634 (666)
+...|++++|++.|++.. ..|+ .. .++..+..+...|++++|.+.++++++++|++..++..++.++...|
T Consensus 477 ~~~~g~~~~A~~~~~~Al~l~p~~~~~~~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g 556 (615)
T TIGR00990 477 LLDQNKFDEAIEKFDTAIELEKETKPMYMNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQG 556 (615)
T ss_pred HHHccCHHHHHHHHHHHHhcCCccccccccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcc
Confidence 999999999999998754 3332 11 11122222344699999999999999999999989999999999999
Q ss_pred CchHHHHHHHHHHhCC
Q 047767 635 EFEVSMQIRETALARK 650 (666)
Q Consensus 635 ~~~~A~~~~~~~~~~~ 650 (666)
++++|++.|+++.+..
T Consensus 557 ~~~eAi~~~e~A~~l~ 572 (615)
T TIGR00990 557 DVDEALKLFERAAELA 572 (615)
T ss_pred CHHHHHHHHHHHHHHh
Confidence 9999999999887543
No 17
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.85 E-value=4.6e-17 Score=175.33 Aligned_cols=392 Identities=10% Similarity=0.025 Sum_probs=234.8
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccC
Q 047767 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261 (666)
Q Consensus 182 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 261 (666)
.+......|+.++|++++.+..... +.+...+..+...+...|++++|..+++..++.. |.+...+..++.++...|
T Consensus 21 ~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~l~~~g 97 (765)
T PRK10049 21 WLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLE--PQNDDYQRGLILTLADAG 97 (765)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCC
Confidence 3444555666666666666655411 2233345555555555666666666666655553 344444444555555555
Q ss_pred ChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHH
Q 047767 262 SLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338 (666)
Q Consensus 262 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 338 (666)
+.++|...+++.. +.+.. +..+...+...|+.++|+..++++.
T Consensus 98 ~~~eA~~~l~~~l~~~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al--------------------------------- 143 (765)
T PRK10049 98 QYDEALVKAKQLVSGAPDKAN-LLALAYVYKRAGRHWDELRAMTQAL--------------------------------- 143 (765)
T ss_pred CHHHHHHHHHHHHHhCCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHH---------------------------------
Confidence 5555555444432 11223 4444444445555555555555444
Q ss_pred HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcc--------cHHHHHHHHH-----hcCCh---hHHHHH
Q 047767 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE--------CCNSLMTSLL-----HSGNI---KDAVEM 402 (666)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~--------~~~~li~~~~-----~~~~~---~~a~~~ 402 (666)
+.. |++..++..+..++...+..+.|...++.... ++. ....++.... ..+++ ++|+..
T Consensus 144 --~~~--P~~~~~~~~la~~l~~~~~~e~Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~ 218 (765)
T PRK10049 144 --PRA--PQTQQYPTEYVQALRNNRLSAPALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQ 218 (765)
T ss_pred --HhC--CCCHHHHHHHHHHHHHCCChHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHH
Confidence 432 22555555666666666777777776665554 211 0111111111 11122 455555
Q ss_pred HHHHHHc-CCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCC
Q 047767 403 FGFMVDE-GIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP 481 (666)
Q Consensus 403 ~~~m~~~-~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 481 (666)
++.+.+. ...|+... ... ......+..+...|++++|+..|+.+.+.
T Consensus 219 ~~~ll~~~~~~p~~~~--~~~------------------------------~a~~d~l~~Ll~~g~~~eA~~~~~~ll~~ 266 (765)
T PRK10049 219 YDALEALWHDNPDATA--DYQ------------------------------RARIDRLGALLARDRYKDVISEYQRLKAE 266 (765)
T ss_pred HHHHHhhcccCCccch--HHH------------------------------HHHHHHHHHHHHhhhHHHHHHHHHHhhcc
Confidence 5555533 11221110 000 00001122345668888898888888752
Q ss_pred C---H-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhC---
Q 047767 482 N---V-VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-----KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG--- 549 (666)
Q Consensus 482 ~---~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--- 549 (666)
+ + ..-..+..+|...|++++|+..|+++.+. .|. ......+..++...|++++|.++++.+.....
T Consensus 267 ~~~~P~~a~~~la~~yl~~g~~e~A~~~l~~~l~~--~p~~~~~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~ 344 (765)
T PRK10049 267 GQIIPPWAQRWVASAYLKLHQPEKAQSILTELFYH--PETIADLSDEELADLFYSLLESENYPGALTVTAHTINNSPPFL 344 (765)
T ss_pred CCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHhhc--CCCCCCCChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceE
Confidence 1 1 11222466788889999999999988763 332 23455666678888999999999988876410
Q ss_pred -------CCCC---chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 550 -------IDAD---RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 550 -------~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
-.|+ ...+..++..+...|++++|+++++++. ..| +...+..+...+...|++++|++.++++++.+|
T Consensus 345 ~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~~~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~P 424 (765)
T PRK10049 345 RLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAYNAPGNQGLRIDYASVLQARGWPRAAENELKKAEVLEP 424 (765)
T ss_pred eecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCC
Confidence 0122 2245567788889999999999998865 344 677888888888899999999999999999999
Q ss_pred CCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 618 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
+++..+..++..+...|++++|..+++.+.+.
T Consensus 425 d~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~ 456 (765)
T PRK10049 425 RNINLEVEQAWTALDLQEWRQMDVLTDDVVAR 456 (765)
T ss_pred CChHHHHHHHHHHHHhCCHHHHHHHHHHHHHh
Confidence 99999999999999999999999999888764
No 18
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.85 E-value=8.2e-19 Score=176.43 Aligned_cols=298 Identities=14% Similarity=0.114 Sum_probs=206.5
Q ss_pred HHHHHcCCChHHHHHHHHHhHhcCCCCC-hhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcC
Q 047767 285 VSIYADYDLIFDALELFFRMQLCRKRPS-IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCN 363 (666)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 363 (666)
...+...|++++|...|+++.+.+ |+ ..++..+...+...|+++.|..+++.+...+..+ +..
T Consensus 42 g~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~-~~~------------- 105 (389)
T PRK11788 42 GLNFLLNEQPDKAIDLFIEMLKVD--PETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLT-REQ------------- 105 (389)
T ss_pred HHHHHhcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCC-HHH-------------
Confidence 334556677777888877777642 32 2234444444444444444444444443321110 000
Q ss_pred ChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHH
Q 047767 364 VIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCA 443 (666)
Q Consensus 364 ~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~ 443 (666)
....+..+...|.+.|++++|..+|+++.+..
T Consensus 106 ---------------~~~~~~~La~~~~~~g~~~~A~~~~~~~l~~~--------------------------------- 137 (389)
T PRK11788 106 ---------------RLLALQELGQDYLKAGLLDRAEELFLQLVDEG--------------------------------- 137 (389)
T ss_pred ---------------HHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCC---------------------------------
Confidence 01234566677777777777777777776531
Q ss_pred HHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CC------HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 047767 444 IKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PN------VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515 (666)
Q Consensus 444 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 515 (666)
+.+..+++.++..+...|++++|.+.++.+.+ |+ ...+..+...+...|++++|...++++.+. .
T Consensus 138 -----~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~ 210 (389)
T PRK11788 138 -----DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARALLKKALAA--D 210 (389)
T ss_pred -----cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHhH--C
Confidence 12233444556667777777777777776653 11 123556777888899999999999999874 4
Q ss_pred CC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHH
Q 047767 516 PD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD--RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSS 591 (666)
Q Consensus 516 p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~ 591 (666)
|+ ...+..+...+.+.|++++|.++++++.+. .|+ ...+..++.+|...|++++|...++++. ..|+...+..
T Consensus 211 p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~---~p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~ 287 (389)
T PRK11788 211 PQCVRASILLGDLALAQGDYAAAIEALERVEEQ---DPEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEYPGADLLLA 287 (389)
T ss_pred cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH---ChhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHH
Confidence 54 447777888899999999999999999865 344 4667889999999999999999998865 5677667788
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh---cCCchHHHHHHHHHHhCCCCcCCCc
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE---IGEFEVSMQIRETALARKLTRDIGH 657 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~---~g~~~~A~~~~~~~~~~~~~~~~~~ 657 (666)
++..+.+.|++++|...++++++..|++. .+..+...+.. .|+.++|+.+++++.+++++++|.+
T Consensus 288 la~~~~~~g~~~~A~~~l~~~l~~~P~~~-~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~~p~~ 355 (389)
T PRK11788 288 LAQLLEEQEGPEAAQALLREQLRRHPSLR-GFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKRKPRY 355 (389)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhCcCHH-HHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhCCCCE
Confidence 88889999999999999999999999875 45555544443 5689999999999999999888874
No 19
>KOG2002 consensus TPR-containing nuclear phosphoprotein that regulates K(+) uptake [Inorganic ion transport and metabolism]
Probab=99.83 E-value=1.1e-15 Score=153.82 Aligned_cols=547 Identities=12% Similarity=0.054 Sum_probs=376.5
Q ss_pred hhhHHHHHHHHHhCCCCCCcccHHHHHHHHH--cCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhh
Q 047767 91 PKQALYLYDEMVSHGIKESASTFSSVLSVCS--NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168 (666)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 168 (666)
.+.|...|....+.. ++|.- ..+.+++. ..+++..|..+|...+.....--+...-.+...+.+.|+.+.|...|
T Consensus 146 ~~~A~a~F~~Vl~~s-p~Nil--~LlGkA~i~ynkkdY~~al~yyk~al~inp~~~aD~rIgig~Cf~kl~~~~~a~~a~ 222 (1018)
T KOG2002|consen 146 MDDADAQFHFVLKQS-PDNIL--ALLGKARIAYNKKDYRGALKYYKKALRINPACKADVRIGIGHCFWKLGMSEKALLAF 222 (1018)
T ss_pred HHHHHHHHHHHHhhC-CcchH--HHHHHHHHHhccccHHHHHHHHHHHHhcCcccCCCccchhhhHHHhccchhhHHHHH
Confidence 467777777776653 33433 34444444 57899999999999776543322223333445667889999999999
Q ss_pred ccCCCCCcccHHHHHHHH---HhcC---CchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCC
Q 047767 169 DELPERNLATWNLMLRAF---CELS---RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW 242 (666)
Q Consensus 169 ~~~~~~~~~~~~~li~~~---~~~~---~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 242 (666)
....+-|+..-++++... .... .+..++.++....... .-|+...+.|-..+...|++..+..+...+.....
T Consensus 223 ~ralqLdp~~v~alv~L~~~~l~~~d~~s~~~~~~ll~~ay~~n-~~nP~~l~~LAn~fyfK~dy~~v~~la~~ai~~t~ 301 (1018)
T KOG2002|consen 223 ERALQLDPTCVSALVALGEVDLNFNDSDSYKKGVQLLQRAYKEN-NENPVALNHLANHFYFKKDYERVWHLAEHAIKNTE 301 (1018)
T ss_pred HHHHhcChhhHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhhc-CCCcHHHHHHHHHHhhcccHHHHHHHHHHHHHhhh
Confidence 988886665545444322 1222 3445556655544432 33566777788889999999999999999887641
Q ss_pred C-CchHHHHHHHHHHHHccCChHHHHHHhccCCC--CC--hhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCCh-hhH
Q 047767 243 V-DVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DD--VISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI-RSF 316 (666)
Q Consensus 243 ~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~--~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-~t~ 316 (666)
. +.-...|-.+.++|...|++++|...|..... +| +..+--+.+.|.+.|+++.+...|+..... .|+. .|.
T Consensus 302 ~~~~~aes~Y~~gRs~Ha~Gd~ekA~~yY~~s~k~~~d~~~l~~~GlgQm~i~~~dle~s~~~fEkv~k~--~p~~~etm 379 (1018)
T KOG2002|consen 302 NKSIKAESFYQLGRSYHAQGDFEKAFKYYMESLKADNDNFVLPLVGLGQMYIKRGDLEESKFCFEKVLKQ--LPNNYETM 379 (1018)
T ss_pred hhHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHccCCCCccccccchhHHHHHhchHHHHHHHHHHHHHh--CcchHHHH
Confidence 1 12234577889999999999999998876653 22 445566788999999999999999998764 3544 444
Q ss_pred HHHHHHHhccC----ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccC--------CCCCcccHH
Q 047767 317 VEFLNFASRTG----NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESA--------PGRSLECCN 384 (666)
Q Consensus 317 ~~ll~~~~~~~----~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~~~~ 384 (666)
..+-..+...+ ..+.|..++....+.- |.+...|-.+..++....-+.. +.++..+ ....+...|
T Consensus 380 ~iLG~Lya~~~~~~~~~d~a~~~l~K~~~~~--~~d~~a~l~laql~e~~d~~~s-L~~~~~A~d~L~~~~~~ip~E~LN 456 (1018)
T KOG2002|consen 380 KILGCLYAHSAKKQEKRDKASNVLGKVLEQT--PVDSEAWLELAQLLEQTDPWAS-LDAYGNALDILESKGKQIPPEVLN 456 (1018)
T ss_pred HHHHhHHHhhhhhhHHHHHHHHHHHHHHhcc--cccHHHHHHHHHHHHhcChHHH-HHHHHHHHHHHHHcCCCCCHHHHH
Confidence 44444444443 3456666666665544 4478888888888876544333 4444322 234566789
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHHc---CCCCCHH-----HHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHH
Q 047767 385 SLMTSLLHSGNIKDAVEMFGFMVDE---GIGLDEV-----TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456 (666)
Q Consensus 385 ~li~~~~~~~~~~~a~~~~~~m~~~---~~~p~~~-----~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 456 (666)
.+...+...|++++|...|.+.... ...+|.. |...-+.. +....++.+.|.+.+..+.+... .=+..|-
T Consensus 457 Nvaslhf~~g~~~~A~~~f~~A~~~~~~~~n~de~~~~~lt~~YNlar-l~E~l~~~~~A~e~Yk~Ilkehp-~YId~yl 534 (1018)
T KOG2002|consen 457 NVASLHFRLGNIEKALEHFKSALGKLLEVANKDEGKSTNLTLKYNLAR-LLEELHDTEVAEEMYKSILKEHP-GYIDAYL 534 (1018)
T ss_pred hHHHHHHHhcChHHHHHHHHHHhhhhhhhcCccccccchhHHHHHHHH-HHHhhhhhhHHHHHHHHHHHHCc-hhHHHHH
Confidence 9999999999999999999988765 2334442 22222222 25666788888888888877542 1122222
Q ss_pred HHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHHHHHHHHHHhc---
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIPDKVTFLCVLAGCN--- 529 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~~~~~l~~~~~--- 529 (666)
.+.-+.-..+...+|...++.... .++..+..+...+.+...+..|.+-|....+.- ..+|..+...|.+.|.
T Consensus 535 Rl~~ma~~k~~~~ea~~~lk~~l~~d~~np~arsl~G~~~l~k~~~~~a~k~f~~i~~~~~~~~D~YsliaLGN~~~~~l 614 (1018)
T KOG2002|consen 535 RLGCMARDKNNLYEASLLLKDALNIDSSNPNARSLLGNLHLKKSEWKPAKKKFETILKKTSTKTDAYSLIALGNVYIQAL 614 (1018)
T ss_pred HhhHHHHhccCcHHHHHHHHHHHhcccCCcHHHHHHHHHHHhhhhhcccccHHHHHHhhhccCCchhHHHHhhHHHHHHh
Confidence 222222233667788888887764 567777778888999889988888777666532 2367666666665443
Q ss_pred ---------CCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCC--CCCHHHHHHHHHHHHh
Q 047767 530 ---------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG--GGDCMMWSSLLRSCRV 598 (666)
Q Consensus 530 ---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~~l~~~~~~ 598 (666)
..+..+.|+++|.++.+. .+-+...-+-+.-+++..|++.+|..+|.++.. .....+|..+...|..
T Consensus 615 ~~~~rn~ek~kk~~~KAlq~y~kvL~~--dpkN~yAANGIgiVLA~kg~~~~A~dIFsqVrEa~~~~~dv~lNlah~~~e 692 (1018)
T KOG2002|consen 615 HNPSRNPEKEKKHQEKALQLYGKVLRN--DPKNMYAANGIGIVLAEKGRFSEARDIFSQVREATSDFEDVWLNLAHCYVE 692 (1018)
T ss_pred cccccChHHHHHHHHHHHHHHHHHHhc--CcchhhhccchhhhhhhccCchHHHHHHHHHHHHHhhCCceeeeHHHHHHH
Confidence 123467888888888753 334477888889999999999999999998872 2256789999999999
Q ss_pred hCChHHHHHHHHHHHhcC--CCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 599 HGNEIIGRRVANILMELE--PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 599 ~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.|++..|++.|+..+... .+++.+..-|+.++.+.|++.+|.+.........
T Consensus 693 ~~qy~~AIqmYe~~lkkf~~~~~~~vl~~Lara~y~~~~~~eak~~ll~a~~~~ 746 (1018)
T KOG2002|consen 693 QGQYRLAIQMYENCLKKFYKKNRSEVLHYLARAWYEAGKLQEAKEALLKARHLA 746 (1018)
T ss_pred HHHHHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC
Confidence 999999999999998843 4578889999999999999999999987766543
No 20
>PRK10049 pgaA outer membrane protein PgaA; Provisional
Probab=99.83 E-value=2.8e-16 Score=169.24 Aligned_cols=407 Identities=11% Similarity=0.002 Sum_probs=240.2
Q ss_pred CcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC---CCcccHHHHHHH
Q 047767 109 SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE---RNLATWNLMLRA 185 (666)
Q Consensus 109 ~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~ 185 (666)
++....-.+......|+.++|++++....... +.+...+..+..++.+.|++++|...|+.... .+...+..+...
T Consensus 14 ~~~~~~d~~~ia~~~g~~~~A~~~~~~~~~~~-~~~a~~~~~lA~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~la~~ 92 (765)
T PRK10049 14 SNNQIADWLQIALWAGQDAEVITVYNRYRVHM-QLPARGYAAVAVAYRNLKQWQNSLTLWQKALSLEPQNDDYQRGLILT 92 (765)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHH
Confidence 33334444455555556666655555554422 23333455555555555555555555555322 233445555666
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHH
Q 047767 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265 (666)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 265 (666)
+...|++++|+..+++..+. -+.+.. +..+..++...|+.++|...++++.+.. |.+...+..+..++...+..++
T Consensus 93 l~~~g~~~eA~~~l~~~l~~-~P~~~~-~~~la~~l~~~g~~~~Al~~l~~al~~~--P~~~~~~~~la~~l~~~~~~e~ 168 (765)
T PRK10049 93 LADAGQYDEALVKAKQLVSG-APDKAN-LLALAYVYKRAGRHWDELRAMTQALPRA--PQTQQYPTEYVQALRNNRLSAP 168 (765)
T ss_pred HHHCCCHHHHHHHHHHHHHh-CCCCHH-HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCChHH
Confidence 66677777777777776654 122333 5555555666677777777777777664 5556666666777777777777
Q ss_pred HHHHhccCCCCChh--------hHHHHHHHHHc-----CCCh---HHHHHHHHHhHhc-CCCCChhhHHHHHHHHhccCC
Q 047767 266 AKKSFDFIPVDDVI--------SWNSIVSIYAD-----YDLI---FDALELFFRMQLC-RKRPSIRSFVEFLNFASRTGN 328 (666)
Q Consensus 266 A~~~~~~~~~~~~~--------~~~~li~~~~~-----~g~~---~~a~~~~~~m~~~-~~~p~~~t~~~ll~~~~~~~~ 328 (666)
|.+.++.... ++. ....++..... .+++ ++|++.++.+... ...|+.
T Consensus 169 Al~~l~~~~~-~p~~~~~l~~~~~~~~~r~~~~~~~~~~~r~~~ad~Al~~~~~ll~~~~~~p~~--------------- 232 (765)
T PRK10049 169 ALGAIDDANL-TPAEKRDLEADAAAELVRLSFMPTRSEKERYAIADRALAQYDALEALWHDNPDA--------------- 232 (765)
T ss_pred HHHHHHhCCC-CHHHHHHHHHHHHHHHHHhhcccccChhHHHHHHHHHHHHHHHHHhhcccCCcc---------------
Confidence 7777766554 211 01111111110 1111 3334344433321 011110
Q ss_pred hhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047767 329 VYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVD 408 (666)
Q Consensus 329 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (666)
... +.. .....+..+...|++++|+..|+++.+
T Consensus 233 --------------------~~~---~~~------------------------a~~d~l~~Ll~~g~~~eA~~~~~~ll~ 265 (765)
T PRK10049 233 --------------------TAD---YQR------------------------ARIDRLGALLARDRYKDVISEYQRLKA 265 (765)
T ss_pred --------------------chH---HHH------------------------HHHHHHHHHHHhhhHHHHHHHHHHhhc
Confidence 000 000 000112233455677777777777766
Q ss_pred cCCC-CCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CC---
Q 047767 409 EGIG-LDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PN--- 482 (666)
Q Consensus 409 ~~~~-p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~--- 482 (666)
.+.. |+.... .+...|...|++++|...|+++.+ |.
T Consensus 266 ~~~~~P~~a~~--------------------------------------~la~~yl~~g~~e~A~~~l~~~l~~~p~~~~ 307 (765)
T PRK10049 266 EGQIIPPWAQR--------------------------------------WVASAYLKLHQPEKAQSILTELFYHPETIAD 307 (765)
T ss_pred cCCCCCHHHHH--------------------------------------HHHHHHHhcCCcHHHHHHHHHHhhcCCCCCC
Confidence 5421 221110 022345556666666666665542 11
Q ss_pred --HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-----------CCCCH---HHHHHHHHHhcCCCcHHHHHHHHHHhHH
Q 047767 483 --VVCFTSIMNGYSRNGMGREALDMLEVMIQRG-----------LIPDK---VTFLCVLAGCNHSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 483 --~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-----------~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 546 (666)
......+..++...|++++|..+++.+.+.. -.|+. ..+..+...+...|+.++|++.++++..
T Consensus 308 ~~~~~~~~L~~a~~~~g~~~eA~~~l~~~~~~~P~~~~~~~~~~~~p~~~~~~a~~~~a~~l~~~g~~~eA~~~l~~al~ 387 (765)
T PRK10049 308 LSDEELADLFYSLLESENYPGALTVTAHTINNSPPFLRLYGSPTSIPNDDWLQGQSLLSQVAKYSNDLPQAEMRARELAY 387 (765)
T ss_pred CChHHHHHHHHHHHhcccHHHHHHHHHHHhhcCCceEeecCCCCCCCCchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 2334555666777888888888888877631 12332 2345666788899999999999999986
Q ss_pred hhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchH
Q 047767 547 VYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623 (666)
Q Consensus 547 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 623 (666)
. .|+ ...+..++..+...|++++|++.++++. ..| +...+..++..+...|++++|+.+++++++..|+++.+.
T Consensus 388 ~---~P~n~~l~~~lA~l~~~~g~~~~A~~~l~~al~l~Pd~~~l~~~~a~~al~~~~~~~A~~~~~~ll~~~Pd~~~~~ 464 (765)
T PRK10049 388 N---APGNQGLRIDYASVLQARGWPRAAENELKKAEVLEPRNINLEVEQAWTALDLQEWRQMDVLTDDVVAREPQDPGVQ 464 (765)
T ss_pred h---CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCHHHH
Confidence 5 455 8889999999999999999999999866 556 466777777788899999999999999999999987554
Q ss_pred H
Q 047767 624 S 624 (666)
Q Consensus 624 ~ 624 (666)
.
T Consensus 465 ~ 465 (765)
T PRK10049 465 R 465 (765)
T ss_pred H
Confidence 3
No 21
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.82 E-value=4.7e-17 Score=171.34 Aligned_cols=329 Identities=11% Similarity=-0.023 Sum_probs=237.8
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHH
Q 047767 280 SWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMY 359 (666)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 359 (666)
....++..+.+.|++++|+.+++........+.. .+..+..+....|+.+.|...++.+.... |.+...+..+...+
T Consensus 44 ~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~~~~-~l~~l~~~~l~~g~~~~A~~~l~~~l~~~--P~~~~a~~~la~~l 120 (656)
T PRK15174 44 NIILFAIACLRKDETDVGLTLLSDRVLTAKNGRD-LLRRWVISPLASSQPDAVLQVVNKLLAVN--VCQPEDVLLVASVL 120 (656)
T ss_pred CHHHHHHHHHhcCCcchhHHHhHHHHHhCCCchh-HHHHHhhhHhhcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHH
Confidence 3445566777788888888888877765433333 33344455556788888888888877754 33677788888888
Q ss_pred HhcCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhH
Q 047767 360 GKCNVIESSVAVFESAPGR---SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSC 436 (666)
Q Consensus 360 ~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a 436 (666)
...|+.++|...+++.... +...+..+...+...|++++|...++.+......+ ......+.. ....|++++|
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l~P~~~~a~~~la~~l~~~g~~~eA~~~~~~~~~~~P~~--~~a~~~~~~--l~~~g~~~eA 196 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLAFSGNSQIFALHLRTLVLMDKELQAISLARTQAQEVPPR--GDMIATCLS--FLNKSRLPED 196 (656)
T ss_pred HHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCCCC--HHHHHHHHH--HHHcCCHHHH
Confidence 8888888888888776542 44567778888888888888888888776653222 222222223 5567788888
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhH----HHHHHHHH
Q 047767 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGRE----ALDMLEVM 509 (666)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~----a~~~~~~m 509 (666)
...+..+.+....++......+...+...|++++|...++.... .+...+..+...+...|++++ |...+++.
T Consensus 197 ~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~~~~A 276 (656)
T PRK15174 197 HDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALARGLDGAALRRSLGLAYYQSGRSREAKLQAAEHWRHA 276 (656)
T ss_pred HHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHcCCchhhHHHHHHHHHHH
Confidence 88777766654333444445556677888999999888887763 356677788888888898885 78888888
Q ss_pred HHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH
Q 047767 510 IQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDC 586 (666)
Q Consensus 510 ~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~ 586 (666)
.+ ..|+.. .+..+...+...|++++|...++++.+. .|+ ...+..+..+|.+.|++++|+..++++. ..|+.
T Consensus 277 l~--l~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l---~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P~~ 351 (656)
T PRK15174 277 LQ--FNSDNVRIVTLYADALIRTGQNEKAIPLLQQSLAT---HPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKGVT 351 (656)
T ss_pred Hh--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccc
Confidence 87 556544 7888888888999999999999988864 555 5667778888999999999999888766 45644
Q ss_pred H-HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCc
Q 047767 587 M-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 587 ~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
. .+..+..++...|+.++|+..|+++++..|++.
T Consensus 352 ~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~~~ 386 (656)
T PRK15174 352 SKWNRYAAAALLQAGKTSEAESVFEHYIQARASHL 386 (656)
T ss_pred hHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChhhc
Confidence 3 333456667888999999999999999888763
No 22
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.82 E-value=1.1e-15 Score=161.07 Aligned_cols=432 Identities=11% Similarity=0.044 Sum_probs=215.7
Q ss_pred hHhcCChhHHHHhhccCCC--CCcc-cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHh---hHHHHHHHhcccCChH
Q 047767 155 YMRMGPSVRALDLFDELPE--RNLA-TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL---SFCYMVRGCSIGMLLD 228 (666)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~--~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~~~ 228 (666)
..+.|+++.|+..|++..+ |+.. ....++..+...|+.++|+..+++.. .|+.. ....+...+...|+++
T Consensus 44 ~~r~Gd~~~Al~~L~qaL~~~P~~~~av~dll~l~~~~G~~~~A~~~~eka~----~p~n~~~~~llalA~ly~~~gdyd 119 (822)
T PRK14574 44 RARAGDTAPVLDYLQEESKAGPLQSGQVDDWLQIAGWAGRDQEVIDVYERYQ----SSMNISSRGLASAARAYRNEKRWD 119 (822)
T ss_pred HHhCCCHHHHHHHHHHHHhhCccchhhHHHHHHHHHHcCCcHHHHHHHHHhc----cCCCCCHHHHHHHHHHHHHcCCHH
Confidence 3455555555555555543 2211 11255555555566666666665555 22211 1111233455556666
Q ss_pred HHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCCh--hhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 047767 229 EGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV--ISWNSIVSIYADYDLIFDALELFFRMQL 306 (666)
Q Consensus 229 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (666)
+|.++++++.+.. |.+..++..++..+...++.++|.+.++.+.+.++ ..+-.++..+...++..+|++.++++.+
T Consensus 120 ~Aiely~kaL~~d--P~n~~~l~gLa~~y~~~~q~~eAl~~l~~l~~~dp~~~~~l~layL~~~~~~~~~AL~~~ekll~ 197 (822)
T PRK14574 120 QALALWQSSLKKD--PTNPDLISGMIMTQADAGRGGVVLKQATELAERDPTVQNYMTLSYLNRATDRNYDALQASSEAVR 197 (822)
T ss_pred HHHHHHHHHHhhC--CCCHHHHHHHHHHHhhcCCHHHHHHHHHHhcccCcchHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence 6666666666654 55566666777777888888888888877764333 3333333333335555568888888877
Q ss_pred cCCCCC-hhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHH
Q 047767 307 CRKRPS-IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNS 385 (666)
Q Consensus 307 ~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 385 (666)
.. |+ ...+.....++.+.|-...|.++.+.-... +.+ .-...| +.+.+....+....++
T Consensus 198 ~~--P~n~e~~~~~~~~l~~~~~~~~a~~l~~~~p~~-f~~---~~~~~l--------~~~~~a~~vr~a~~~~------ 257 (822)
T PRK14574 198 LA--PTSEEVLKNHLEILQRNRIVEPALRLAKENPNL-VSA---EHYRQL--------ERDAAAEQVRMAVLPT------ 257 (822)
T ss_pred hC--CCCHHHHHHHHHHHHHcCCcHHHHHHHHhCccc-cCH---HHHHHH--------HHHHHHHHHhhccccc------
Confidence 52 43 333444455555555544444333321110 000 000000 0011111110000000
Q ss_pred HHHHHHhcC---ChhHHHHHHHHHHHc-CCCCCH-HHH----HHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHH
Q 047767 386 LMTSLLHSG---NIKDAVEMFGFMVDE-GIGLDE-VTL----STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSC 456 (666)
Q Consensus 386 li~~~~~~~---~~~~a~~~~~~m~~~-~~~p~~-~~~----~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 456 (666)
-...+ -.+.|+.-++.+... +-.|.. ..| .--+.+ ....++...+...++.+...+.+....+-.
T Consensus 258 ----~~~~~r~~~~d~ala~~~~l~~~~~~~p~~~~~~~~~~~Drl~a--L~~r~r~~~vi~~y~~l~~~~~~~P~y~~~ 331 (822)
T PRK14574 258 ----RSETERFDIADKALADYQNLLTRWGKDPEAQADYQRARIDRLGA--LLVRHQTADLIKEYEAMEAEGYKMPDYARR 331 (822)
T ss_pred ----ccchhhHHHHHHHHHHHHHHHhhccCCCccchHHHHHHHHHHHH--HHHhhhHHHHHHHHHHhhhcCCCCCHHHHH
Confidence 00011 234455555555542 112321 111 112223 455556666666666666666555555666
Q ss_pred HHHHHHHhhCCHHHHHHHhccCCCC---------CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-----------CC
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIPSP---------NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL-----------IP 516 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~~---------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-----------~p 516 (666)
++.++|...+++++|..+++++..+ +......|..+|...+++++|..+++.+.+.-. .|
T Consensus 332 a~adayl~~~~P~kA~~l~~~~~~~~~~~~~~~~~~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~p 411 (822)
T PRK14574 332 WAASAYIDRRLPEKAAPILSSLYYSDGKTFRNSDDLLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEP 411 (822)
T ss_pred HHHHHHHhcCCcHHHHHHHHHHhhccccccCCCcchHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCC
Confidence 6666666666666666666655321 122234566666666666666666666665210 11
Q ss_pred --CHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHH
Q 047767 517 --DKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSS 591 (666)
Q Consensus 517 --~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ 591 (666)
|-. .+..++..+...|+..+|++.++++... -+-|......+.+.+...|++.+|++.++... ..| +..+...
T Consensus 412 n~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~~--aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~~l~P~~~~~~~~ 489 (822)
T PRK14574 412 NDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSST--APANQNLRIALASIYLARDLPRKAEQELKAVESLAPRSLILERA 489 (822)
T ss_pred CccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhCCccHHHHHH
Confidence 111 1233344555666666666666666542 22335566666666666666666666665443 333 3445555
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCc
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
.+.++...+++++|..+.+.+.+..|+++
T Consensus 490 ~~~~al~l~e~~~A~~~~~~l~~~~Pe~~ 518 (822)
T PRK14574 490 QAETAMALQEWHQMELLTDDVISRSPEDI 518 (822)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhhCCCch
Confidence 55555666666666666666666666665
No 23
>PRK11788 tetratricopeptide repeat protein; Provisional
Probab=99.81 E-value=3e-18 Score=172.38 Aligned_cols=290 Identities=12% Similarity=0.041 Sum_probs=202.9
Q ss_pred HhHhcCCChhhHHHHhhcCCC--C-CchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCC---cccHHHHHHHHHcCCC
Q 047767 52 DDFVKSGHLNSAKKLFDEMPA--R-DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKES---ASTFSSVLSVCSNAGF 125 (666)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~---~~~~~~ll~~~~~~~~ 125 (666)
..+...|++++|...|+++.+ | +..++..+...+...|++++|..+++.+...+..++ ...+..+...+...|+
T Consensus 43 ~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~La~~~~~~g~ 122 (389)
T PRK11788 43 LNFLLNEQPDKAIDLFIEMLKVDPETVELHLALGNLFRRRGEVDRAIRIHQNLLSRPDLTREQRLLALQELGQDYLKAGL 122 (389)
T ss_pred HHHHhcCChHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCcHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHHCCC
Confidence 345567778888888887763 3 344677777777788888888888887776432111 2456677777777888
Q ss_pred hHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCC--Cc------ccHHHHHHHHHhcCCchHHHH
Q 047767 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER--NL------ATWNLMLRAFCELSRPDEVLR 197 (666)
Q Consensus 126 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~--~~------~~~~~li~~~~~~~~~~~a~~ 197 (666)
++.|..+++.+.+.. +.+..++..++..+.+.|++++|.+.++.+.+. +. ..+..+...+.+.|++++|..
T Consensus 123 ~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 201 (389)
T PRK11788 123 LDRAEELFLQLVDEG-DFAEGALQQLLEIYQQEKDWQKAIDVAERLEKLGGDSLRVEIAHFYCELAQQALARGDLDAARA 201 (389)
T ss_pred HHHHHHHHHHHHcCC-cchHHHHHHHHHHHHHhchHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHhCCCHHHHHH
Confidence 888888888877653 345667777788888888888888887776542 11 134456666777888888888
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC--C
Q 047767 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--V 275 (666)
Q Consensus 198 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~ 275 (666)
.|+++.+.. +.+...+..+...+...|++++|.++++.+.+.+ ......+++.++.+|.+.|++++|...++.+. .
T Consensus 202 ~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~~ 279 (389)
T PRK11788 202 LLKKALAAD-PQCVRASILLGDLALAQGDYAAAIEALERVEEQD-PEYLSEVLPKLMECYQALGDEAEGLEFLRRALEEY 279 (389)
T ss_pred HHHHHHhHC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-hhhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 888877642 2234466666677778888888888888887764 23334567777888888888888888777764 3
Q ss_pred CChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhc---cCChhhHHHHHHHHHHhCCCC
Q 047767 276 DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR---TGNVYFGKQIHGYVTKLGFDH 346 (666)
Q Consensus 276 ~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~---~~~~~~a~~~~~~~~~~~~~~ 346 (666)
|+...+..++..+.+.|++++|..+++++.+. .|+..++..++..+.. .|+...+..+++.+.+.++.+
T Consensus 280 p~~~~~~~la~~~~~~g~~~~A~~~l~~~l~~--~P~~~~~~~l~~~~~~~~~~g~~~~a~~~~~~~~~~~~~~ 351 (389)
T PRK11788 280 PGADLLLALAQLLEEQEGPEAAQALLREQLRR--HPSLRGFHRLLDYHLAEAEEGRAKESLLLLRDLVGEQLKR 351 (389)
T ss_pred CCchHHHHHHHHHHHhCCHHHHHHHHHHHHHh--CcCHHHHHHHHHHhhhccCCccchhHHHHHHHHHHHHHhC
Confidence 45555677778888888888888888877664 5777777777776654 457778888888887776665
No 24
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.81 E-value=3.8e-16 Score=142.41 Aligned_cols=443 Identities=13% Similarity=0.095 Sum_probs=256.6
Q ss_pred cchHhHHhhhccCCCccchhhhhhccc-CCCCCchhhhhHHHHhHh--cCCChhh-HHHHhhcCCC--------------
Q 047767 11 RTITTLAPTCTSIVPLSSSLLLDSYCQ-PNPQLNIYSSNRTIDDFV--KSGHLNS-AKKLFDEMPA-------------- 72 (666)
Q Consensus 11 ~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~--~~g~~~~-A~~~~~~~~~-------------- 72 (666)
.+=++|++.. +.+.+..+.-+++.|+ +|.+.+...--.|...-+ ...++-- -++.|-.|..
T Consensus 117 ~~E~nL~kmI-S~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~E~S~~sWK~G~v 195 (625)
T KOG4422|consen 117 ETENNLLKMI-SSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFGEDSTSSWKSGAV 195 (625)
T ss_pred cchhHHHHHH-hhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccccccccccccccH
Confidence 3456666654 4567888999999999 888877766555554433 2223222 2334444442
Q ss_pred ---------CCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCC
Q 047767 73 ---------RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGL 143 (666)
Q Consensus 73 ---------~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 143 (666)
.+..+|..||.++|+.-..+.|.++|++......+.+..+||.+|.+-+-..+ .+++.+|.+..+.|
T Consensus 196 AdL~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~~----K~Lv~EMisqkm~P 271 (625)
T KOG4422|consen 196 ADLLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSVG----KKLVAEMISQKMTP 271 (625)
T ss_pred HHHHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhcc----HHHHHHHHHhhcCC
Confidence 23345555555555555555555555555555445555555555544332211 44555555555555
Q ss_pred chhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcc
Q 047767 144 NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223 (666)
Q Consensus 144 ~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 223 (666)
|..|+|++++...+.|+++.|. ..|++++.+|++.|+.|...+|..+|+.+++
T Consensus 272 nl~TfNalL~c~akfg~F~~ar---------------------------~aalqil~EmKeiGVePsLsSyh~iik~f~r 324 (625)
T KOG4422|consen 272 NLFTFNALLSCAAKFGKFEDAR---------------------------KAALQILGEMKEIGVEPSLSSYHLIIKNFKR 324 (625)
T ss_pred chHhHHHHHHHHHHhcchHHHH---------------------------HHHHHHHHHHHHhCCCcchhhHHHHHHHhcc
Confidence 5555555555544444444332 2345677777777777877777777777777
Q ss_pred cCChHH-HHHHHHHHHH----hC---CCCchHHHHHHHHHHHHccCChHHHHHHhccCCC--------C---ChhhHHHH
Q 047767 224 GMLLDE-GKQLHSHVIK----LG---WVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--------D---DVISWNSI 284 (666)
Q Consensus 224 ~~~~~~-a~~~~~~~~~----~~---~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--------~---~~~~~~~l 284 (666)
.++..+ +..++.++.. +. ..+.|...+..-+..|.+..+.+-|.++-.-... + ...-|..+
T Consensus 325 e~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~ig~~~~~~fYyr~~ 404 (625)
T KOG4422|consen 325 ESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFIGPDQHRNFYYRKF 404 (625)
T ss_pred cCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhcChHHHHHHHHHHH
Confidence 766544 3333333332 11 0223445555566666666676666665543321 1 22345667
Q ss_pred HHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 047767 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364 (666)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 364 (666)
....|.....+.-+..|+.|.-.-+-|+..+...++++....+.++...++|.+++..|... ...+
T Consensus 405 ~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA~~v~~~~e~ipRiw~D~~~~ght~-r~~l------------- 470 (625)
T KOG4422|consen 405 FDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRALDVANRLEVIPRIWKDSKEYGHTF-RSDL------------- 470 (625)
T ss_pred HHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHHHhhcCcchhHHHHHHHHHHhhhhh-hHHH-------------
Confidence 77888889999999999999988888999999999999999999999999999998877543 1111
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH---HHHHHhchhhhhcccchhhHHH-HH
Q 047767 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV---TLSTTLKALSVSASANLGSCRL-LH 440 (666)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---~~~~ll~~~~~~~~~~~~~a~~-~~ 440 (666)
-.+++..|......|+.. .+.....- . ..++.++.+ --
T Consensus 471 ----------------------------------~eeil~~L~~~k~hp~tp~r~Ql~~~~ak---~-aad~~e~~e~~~ 512 (625)
T KOG4422|consen 471 ----------------------------------REEILMLLARDKLHPLTPEREQLQVAFAK---C-AADIKEAYESQP 512 (625)
T ss_pred ----------------------------------HHHHHHHHhcCCCCCCChHHHHHHHHHHH---H-HHHHHHHHHhhH
Confidence 122233333333333322 11111111 0 001111111 11
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----CCHHHHH---HHHHHHHHcCChhHHHHHHHHHHHc
Q 047767 441 CCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----PNVVCFT---SIMNGYSRNGMGREALDMLEVMIQR 512 (666)
Q Consensus 441 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~ 512 (666)
..+. ...-+....+.+...+.+.|+.++|.++|.-+.+ |-....| -++..-.+.+++..|...++-|...
T Consensus 513 ~R~r--~~~~~~t~l~~ia~Ll~R~G~~qkA~e~l~l~~~~~~~ip~~p~lnAm~El~d~a~~~~spsqA~~~lQ~a~~~ 590 (625)
T KOG4422|consen 513 IRQR--AQDWPATSLNCIAILLLRAGRTQKAWEMLGLFLRKHNKIPRSPLLNAMAELMDSAKVSNSPSQAIEVLQLASAF 590 (625)
T ss_pred HHHH--hccCChhHHHHHHHHHHHcchHHHHHHHHHHHHhcCCcCCCCcchhhHHHHHHHHHhcCCHHHHHHHHHHHHHc
Confidence 1222 2334455667777778899999999988887632 3333334 5556667778888899888888765
Q ss_pred CCCCCHHHHHHHHHHhcCCCcHHHHHH
Q 047767 513 GLIPDKVTFLCVLAGCNHSGMVKEGQL 539 (666)
Q Consensus 513 g~~p~~~~~~~l~~~~~~~g~~~~a~~ 539 (666)
+...-...-+.+...|.-...-.++++
T Consensus 591 n~~~~E~La~RI~e~f~iNqeq~~~ls 617 (625)
T KOG4422|consen 591 NLPICEGLAQRIMEDFAINQEQKEALS 617 (625)
T ss_pred CchhhhHHHHHHHHhcCcCHHHHHHHh
Confidence 543333344455555554433333333
No 25
>TIGR00990 3a0801s09 mitochondrial precursor proteins import receptor (72 kDa mitochondrial outermembrane protein) (mitochondrial import receptor for the ADP/ATP carrier) (translocase of outermembrane tom70).
Probab=99.81 E-value=2.8e-16 Score=166.38 Aligned_cols=252 Identities=8% Similarity=-0.029 Sum_probs=176.0
Q ss_pred CChhhHHHHHHHHHHhC-CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCC---cccHHHHHHHHHhcCChhHHHHH
Q 047767 327 GNVYFGKQIHGYVTKLG-FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRS---LECCNSLMTSLLHSGNIKDAVEM 402 (666)
Q Consensus 327 ~~~~~a~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~ 402 (666)
++++.|...++.+.+.+ ..|.....+..+...+...|++++|...|+.....+ ...|..+...+...|++++|...
T Consensus 308 ~~y~~A~~~~~~al~~~~~~~~~a~a~~~lg~~~~~~g~~~eA~~~~~kal~l~P~~~~~~~~la~~~~~~g~~~eA~~~ 387 (615)
T TIGR00990 308 ESYEEAARAFEKALDLGKLGEKEAIALNLRGTFKCLKGKHLEALADLSKSIELDPRVTQSYIKRASMNLELGDPDKAEED 387 (615)
T ss_pred hhHHHHHHHHHHHHhcCCCChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHCCCHHHHHHH
Confidence 45556666666655543 223244555566666666666666666666554322 23455555666666777777777
Q ss_pred HHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--
Q 047767 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-- 480 (666)
Q Consensus 403 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 480 (666)
|++..+. .| .+..++..+...+...|++++|...|++..+
T Consensus 388 ~~~al~~--~p------------------------------------~~~~~~~~lg~~~~~~g~~~~A~~~~~kal~l~ 429 (615)
T TIGR00990 388 FDKALKL--NS------------------------------------EDPDIYYHRAQLHFIKGEFAQAGKDYQKSIDLD 429 (615)
T ss_pred HHHHHHh--CC------------------------------------CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 6666543 22 2344555667778888999999999988764
Q ss_pred -CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCc-h--
Q 047767 481 -PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-Q-- 555 (666)
Q Consensus 481 -~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~-- 555 (666)
.+...+..+..++.+.|++++|+..+++..+ ..|+ ...+..+...+...|++++|++.|++..+. .|+. .
T Consensus 430 P~~~~~~~~la~~~~~~g~~~eA~~~~~~al~--~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~Al~l---~p~~~~~~ 504 (615)
T TIGR00990 430 PDFIFSHIQLGVTQYKEGSIASSMATFRRCKK--NFPEAPDVYNYYGELLLDQNKFDEAIEKFDTAIEL---EKETKPMY 504 (615)
T ss_pred ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHHHHHHHHccCHHHHHHHHHHHHhc---CCcccccc
Confidence 3566777888889999999999999999887 4565 457888888999999999999999998754 3431 1
Q ss_pred -----HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 556 -----HYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 556 -----~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
.++.....+...|++++|.+++++.. ..| +...+..++..+...|++++|+..|+++.++.+....
T Consensus 505 ~~~~~l~~~a~~~~~~~~~~~eA~~~~~kAl~l~p~~~~a~~~la~~~~~~g~~~eAi~~~e~A~~l~~~~~e 577 (615)
T TIGR00990 505 MNVLPLINKALALFQWKQDFIEAENLCEKALIIDPECDIAVATMAQLLLQQGDVDEALKLFERAAELARTEGE 577 (615)
T ss_pred ccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHhccHHH
Confidence 11222223445799999999998753 455 4567888999999999999999999999998876444
No 26
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.81 E-value=5.6e-16 Score=153.82 Aligned_cols=484 Identities=13% Similarity=0.045 Sum_probs=287.9
Q ss_pred cCCCCCCCccchHhHHhhhccCCCccchhhhhhccc-CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCCCCchhHHH
Q 047767 2 LSTKLLPRVRTITTLAPTCTSIVPLSSSLLLDSYCQ-PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNL 80 (666)
Q Consensus 2 ~~~~~~p~~~~~~~ll~~~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 80 (666)
..+|+.|+..||..++..|+..|+.+.|- ++..|+ +..+.+...++.++.+....++.+.+. +|...+|..
T Consensus 17 e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~aDtyt~ 88 (1088)
T KOG4318|consen 17 EISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPLADTYTN 88 (1088)
T ss_pred HHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCchhHHHH
Confidence 46799999999999999999999999998 999999 999999999999999999999988776 788999999
Q ss_pred HHHHhhcCCChhh---HHHHHHHHH----hCCCCCCcccHHH--------------HHHHHHcCCChHHHHHHHHHHHHh
Q 047767 81 LISGCGKFRHPKQ---ALYLYDEMV----SHGIKESASTFSS--------------VLSVCSNAGFYTEGIQIHCRVLSL 139 (666)
Q Consensus 81 ll~~~~~~~~~~~---a~~~~~~m~----~~~~~~~~~~~~~--------------ll~~~~~~~~~~~a~~~~~~~~~~ 139 (666)
|+.+|.+.|+... ..+.++... ..|+..-..-+-. ++......|-++.+.+++..+
T Consensus 89 Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll~~~--- 165 (1088)
T KOG4318|consen 89 LLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLLAKV--- 165 (1088)
T ss_pred HHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHHhhC---
Confidence 9999999999765 222222221 2232211111111 122222233333333333322
Q ss_pred cCCCchhhhhHH---HHHh-HhcCChhHHHHhhccCCC-CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhH
Q 047767 140 GFGLNLYIGSPL---VDLY-MRMGPSVRALDLFDELPE-RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSF 214 (666)
Q Consensus 140 ~~~~~~~~~~~l---l~~~-~~~g~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~ 214 (666)
|....++.. +.-. .....+++-....+...+ ++..+|.+++.+-..+|+.+.|..++.+|++.|++.+..-|
T Consensus 166 ---Pvsa~~~p~~vfLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir~HyF 242 (1088)
T KOG4318|consen 166 ---PVSAWNAPFQVFLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIRAHYF 242 (1088)
T ss_pred ---CcccccchHHHHHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcccccc
Confidence 221111111 1111 112345555555555555 89999999999999999999999999999999999999988
Q ss_pred HHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCC--
Q 047767 215 CYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD-- 292 (666)
Q Consensus 215 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g-- 292 (666)
.-++-+ .++...++.+++-|.+.| +.|+..|+...+..+...|....+....+ ....+++-+..-.-.|
T Consensus 243 wpLl~g---~~~~q~~e~vlrgmqe~g-v~p~seT~adyvip~l~N~~t~~~~e~sq-----~~hg~tAavrsaa~rg~~ 313 (1088)
T KOG4318|consen 243 WPLLLG---INAAQVFEFVLRGMQEKG-VQPGSETQADYVIPQLSNGQTKYGEEGSQ-----LAHGFTAAVRSAACRGLL 313 (1088)
T ss_pred hhhhhc---CccchHHHHHHHHHHHhc-CCCCcchhHHHHHhhhcchhhhhcccccc-----hhhhhhHHHHHHHhcccH
Confidence 888766 888899999999999999 99999999988887777665333322221 1112222222212222
Q ss_pred ---C-----hHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhC--CCCCchhHHhHHHHHHHhc
Q 047767 293 ---L-----IFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG--FDHGSVHVQSALTDMYGKC 362 (666)
Q Consensus 293 ---~-----~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~ 362 (666)
. ..-....+.+..-.|+......|.... -....|.-+.++++...+..-- ..++++..+..++.-|.+.
T Consensus 314 a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~-~l~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~lrqyFrr 392 (1088)
T KOG4318|consen 314 ANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCE-KLRHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALLRQYFRR 392 (1088)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHH-HHHHcCCCchHHHHHhhhcCCccccCcchHHHHHHHHHHHHHH
Confidence 1 111111222222223333332222222 2222455555555555544321 2222333333333333332
Q ss_pred CC----------------------hHHHHHHhccCCC----------------CCcc-----------cHHHHHHHHHhc
Q 047767 363 NV----------------------IESSVAVFESAPG----------------RSLE-----------CCNSLMTSLLHS 393 (666)
Q Consensus 363 ~~----------------------~~~a~~~~~~~~~----------------~~~~-----------~~~~li~~~~~~ 393 (666)
-+ .....+....... +... .-+.++..+++.
T Consensus 393 ~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~~h~irdi~~ql~l~l~se 472 (1088)
T KOG4318|consen 393 IERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLIAHLIRDIANQLHLTLNSE 472 (1088)
T ss_pred HHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhhhhHHHHHHHHHHHHHHHH
Confidence 11 1111111111100 0000 123455555555
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHH--hCCCCchHHHHHHHHHHHhhCCHHHH
Q 047767 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK--SGFESNIAVSCSLMDAYSRCGHIELS 471 (666)
Q Consensus 394 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (666)
-+..+++..-+.....-+. ..|..+|.- |......+.|..+.+.... ..+..+...+..+.+.+.+.+....+
T Consensus 473 ~n~lK~l~~~ekye~~lf~---g~ya~Li~l--~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~m~~l~dLL~r~~~l~dl 547 (1088)
T KOG4318|consen 473 YNKLKILCDEEKYEDLLFA---GLYALLIKL--MDLHDKLEYALSFVDEIDTRDESIHLDLPLMTSLQDLLQRLAILYDL 547 (1088)
T ss_pred HHHHHHHHHHHHHHHHHhh---hHHHHHhhh--HHHHHHHHHHHhchhhhcccchhhhcccHhHHHHHHHHHHhHHHHHH
Confidence 5555555433333222111 457777777 7777777777777776643 34456677778888888888888888
Q ss_pred HHHhccCCC-----CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 047767 472 HQVFEKIPS-----PN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514 (666)
Q Consensus 472 ~~~~~~~~~-----~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 514 (666)
..++.++.+ |+ ..++--+++..+..|+.+...++.+-+...|+
T Consensus 548 ~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl 596 (1088)
T KOG4318|consen 548 STILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGL 596 (1088)
T ss_pred HHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhh
Confidence 888888874 22 23344455556667777776666666655443
No 27
>KOG4422 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.80 E-value=8.2e-15 Score=133.86 Aligned_cols=327 Identities=15% Similarity=0.148 Sum_probs=230.8
Q ss_pred hhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHc--CCChHHH-HHHHHHHHHhcCCCchhhhhHHH
Q 047767 76 VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN--AGFYTEG-IQIHCRVLSLGFGLNLYIGSPLV 152 (666)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~~~~~a-~~~~~~~~~~~~~~~~~~~~~ll 152 (666)
.+=|.|+. +...|..+++.-+|+.|.+.|+..+...-..|++..+- ..++.-| ++-|-.|...| +.+..+|
T Consensus 117 ~~E~nL~k-mIS~~EvKDs~ilY~~m~~e~~~vS~kvq~~L~~LV~~~Ns~~~~~~E~~~Fv~~~~~~-E~S~~sW---- 190 (625)
T KOG4422|consen 117 ETENNLLK-MISSREVKDSCILYERMRSENVDVSEKVQLELFRLVTYYNSSNVPFAEWEEFVGMRNFG-EDSTSSW---- 190 (625)
T ss_pred cchhHHHH-HHhhcccchhHHHHHHHHhcCCCCCHHHHHHHHHHHHhhcCCCCcchhHHHHhhccccc-ccccccc----
Confidence 34555554 44678899999999999999988887776666654443 3333322 22333344443 2333344
Q ss_pred HHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHH
Q 047767 153 DLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQ 232 (666)
Q Consensus 153 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 232 (666)
+.|++.+ ++-+....+..+|.+||.++|+-...+.|.++|++-.....+.+..+||.+|.+.+-.. .++
T Consensus 191 ----K~G~vAd---L~~E~~PKT~et~s~mI~Gl~K~~~~ERA~~L~kE~~~~k~kv~~~aFN~lI~~~S~~~----~K~ 259 (625)
T KOG4422|consen 191 ----KSGAVAD---LLFETLPKTDETVSIMIAGLCKFSSLERARELYKEHRAAKGKVYREAFNGLIGASSYSV----GKK 259 (625)
T ss_pred ----ccccHHH---HHHhhcCCCchhHHHHHHHHHHHHhHHHHHHHHHHHHHhhheeeHHhhhhhhhHHHhhc----cHH
Confidence 3444444 34344445667899999999999999999999999999889999999999998854332 378
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCC
Q 047767 233 LHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312 (666)
Q Consensus 233 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 312 (666)
++.+|.... +.||..|+|+++.+..+.|+++.|.+ .|++++.+|++-|+.|.
T Consensus 260 Lv~EMisqk-m~Pnl~TfNalL~c~akfg~F~~ar~---------------------------aalqil~EmKeiGVePs 311 (625)
T KOG4422|consen 260 LVAEMISQK-MTPNLFTFNALLSCAAKFGKFEDARK---------------------------AALQILGEMKEIGVEPS 311 (625)
T ss_pred HHHHHHHhh-cCCchHhHHHHHHHHHHhcchHHHHH---------------------------HHHHHHHHHHHhCCCcc
Confidence 999999988 99999999999999888888887754 35677888888888888
Q ss_pred hhhHHHHHHHHhccCChhh-HHHHHHHHHHh-------CCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC------
Q 047767 313 IRSFVEFLNFASRTGNVYF-GKQIHGYVTKL-------GFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR------ 378 (666)
Q Consensus 313 ~~t~~~ll~~~~~~~~~~~-a~~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 378 (666)
..+|..+|..+++.++..+ +..++.++... .+.|.+...+..-+..|.+..+.+.|.++..-+...
T Consensus 312 LsSyh~iik~f~re~dp~k~as~~i~dI~N~ltGK~fkp~~p~d~~FF~~AM~Ic~~l~d~~LA~~v~~ll~tg~N~~~i 391 (625)
T KOG4422|consen 312 LSSYHLIIKNFKRESDPQKVASSWINDIQNSLTGKTFKPITPTDNKFFQSAMSICSSLRDLELAYQVHGLLKTGDNWKFI 391 (625)
T ss_pred hhhHHHHHHHhcccCCchhhhHHHHHHHHHhhccCcccCCCCchhHHHHHHHHHHHHhhhHHHHHHHHHHHHcCCchhhc
Confidence 8888888888888777654 33344444332 234546666677777777777777777665433221
Q ss_pred -----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCC
Q 047767 379 -----SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449 (666)
Q Consensus 379 -----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~ 449 (666)
...-|..+....|+....+.-+..|+.|...-+-|+..+...++++ ....+.++-..+++..++..|..
T Consensus 392 g~~~~~~fYyr~~~~licq~es~~~~~~~Y~~lVP~~y~p~~~~m~~~lrA--~~v~~~~e~ipRiw~D~~~~ght 465 (625)
T KOG4422|consen 392 GPDQHRNFYYRKFFDLICQMESIDVTLKWYEDLVPSAYFPHSQTMIHLLRA--LDVANRLEVIPRIWKDSKEYGHT 465 (625)
T ss_pred ChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccceecCCchhHHHHHHH--HhhcCcchhHHHHHHHHHHhhhh
Confidence 1112455666777777888888888888877777888888888887 67777777777777766666543
No 28
>PRK15174 Vi polysaccharide export protein VexE; Provisional
Probab=99.80 E-value=1.1e-16 Score=168.44 Aligned_cols=326 Identities=12% Similarity=-0.008 Sum_probs=265.8
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC---CcccHHHHHHHH
Q 047767 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR---SLECCNSLMTSL 390 (666)
Q Consensus 314 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~ 390 (666)
.....++..+.+.|+.+.|..++..+...... +......++.+....|+++.|...++.+... +...+..+...+
T Consensus 43 ~~~~~~~~~~~~~g~~~~A~~l~~~~l~~~p~--~~~~l~~l~~~~l~~g~~~~A~~~l~~~l~~~P~~~~a~~~la~~l 120 (656)
T PRK15174 43 QNIILFAIACLRKDETDVGLTLLSDRVLTAKN--GRDLLRRWVISPLASSQPDAVLQVVNKLLAVNVCQPEDVLLVASVL 120 (656)
T ss_pred cCHHHHHHHHHhcCCcchhHHHhHHHHHhCCC--chhHHHHHhhhHhhcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHH
Confidence 34556777888999999999999999987666 5666777778888899999999999988653 455788888999
Q ss_pred HhcCChhHHHHHHHHHHHcCCCCCH-HHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHH
Q 047767 391 LHSGNIKDAVEMFGFMVDEGIGLDE-VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469 (666)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~~~~~p~~-~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 469 (666)
...|++++|...+++.... .|+. ..+..+... +...|+.+.|...+..+......+... +..+ ..+...|+++
T Consensus 121 ~~~g~~~~Ai~~l~~Al~l--~P~~~~a~~~la~~--l~~~g~~~eA~~~~~~~~~~~P~~~~a-~~~~-~~l~~~g~~~ 194 (656)
T PRK15174 121 LKSKQYATVADLAEQAWLA--FSGNSQIFALHLRT--LVLMDKELQAISLARTQAQEVPPRGDM-IATC-LSFLNKSRLP 194 (656)
T ss_pred HHcCCHHHHHHHHHHHHHh--CCCcHHHHHHHHHH--HHHCCChHHHHHHHHHHHHhCCCCHHH-HHHH-HHHHHcCCHH
Confidence 9999999999999999875 5554 445555555 888999999999998777665443333 3233 3478899999
Q ss_pred HHHHHhccCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHH----HHHH
Q 047767 470 LSHQVFEKIPS----PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKE----GQLV 540 (666)
Q Consensus 470 ~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~----a~~~ 540 (666)
+|...++.+.+ ++...+..+..++...|++++|+..++++.+. .|+ ...+..+...+...|++++ |...
T Consensus 195 eA~~~~~~~l~~~~~~~~~~~~~l~~~l~~~g~~~eA~~~~~~al~~--~p~~~~~~~~Lg~~l~~~G~~~eA~~~A~~~ 272 (656)
T PRK15174 195 EDHDLARALLPFFALERQESAGLAVDTLCAVGKYQEAIQTGESALAR--GLDGAALRRSLGLAYYQSGRSREAKLQAAEH 272 (656)
T ss_pred HHHHHHHHHHhcCCCcchhHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHHHcCCchhhHHHHHHH
Confidence 99999998764 23344555677889999999999999999984 454 4477788889999999986 8999
Q ss_pred HHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 541 FNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 541 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
++++.+. .|+ ...+..+...+.+.|++++|+..+++.. ..| +...+..+..++...|++++|+..++++.+.+|
T Consensus 273 ~~~Al~l---~P~~~~a~~~lg~~l~~~g~~~eA~~~l~~al~l~P~~~~a~~~La~~l~~~G~~~eA~~~l~~al~~~P 349 (656)
T PRK15174 273 WRHALQF---NSDNVRIVTLYADALIRTGQNEKAIPLLQQSLATHPDLPYVRAMYARALRQVGQYTAASDEFVQLAREKG 349 (656)
T ss_pred HHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc
Confidence 9999854 566 7789999999999999999999999765 455 566788888999999999999999999999999
Q ss_pred CCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 618 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
+++..+..++.++...|+.++|+..|+++.+...+
T Consensus 350 ~~~~~~~~~a~al~~~G~~deA~~~l~~al~~~P~ 384 (656)
T PRK15174 350 VTSKWNRYAAAALLQAGKTSEAESVFEHYIQARAS 384 (656)
T ss_pred cchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhChh
Confidence 98877777899999999999999999998776544
No 29
>PRK14574 hmsH outer membrane protein; Provisional
Probab=99.78 E-value=8e-15 Score=154.64 Aligned_cols=137 Identities=9% Similarity=0.005 Sum_probs=107.2
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCC--C-------------C---HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS--P-------------N---VVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-------------~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 513 (666)
......|.-+|...+++++|..+++.+.+ | | ...+..++..+...|+..+|++.++++..
T Consensus 367 ~~~~~~L~yA~ld~e~~~~A~~~l~~~~~~~p~~~~~~~~~~~~pn~d~~~~~~l~a~~~~~~gdl~~Ae~~le~l~~-- 444 (822)
T PRK14574 367 LLDADDLYYSLNESEQLDKAYQFAVNYSEQTPYQVGVYGLPGKEPNDDWIEGQTLLVQSLVALNDLPTAQKKLEDLSS-- 444 (822)
T ss_pred hHHHHHHHHHHHhcccHHHHHHHHHHHHhcCCcEEeccCCCCCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--
Confidence 33345678889999999999999998874 1 1 12345567788999999999999999988
Q ss_pred CCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHH
Q 047767 514 LIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWS 590 (666)
Q Consensus 514 ~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~ 590 (666)
..| |......+...+...|.+.+|.+.++... .+.|+ ..+....+..+...|++.+|..+.+++. ..|+.....
T Consensus 445 ~aP~n~~l~~~~A~v~~~Rg~p~~A~~~~k~a~---~l~P~~~~~~~~~~~~al~l~e~~~A~~~~~~l~~~~Pe~~~~~ 521 (822)
T PRK14574 445 TAPANQNLRIALASIYLARDLPRKAEQELKAVE---SLAPRSLILERAQAETAMALQEWHQMELLTDDVISRSPEDIPSQ 521 (822)
T ss_pred hCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHh---hhCCccHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhCCCchhHH
Confidence 455 55688889999999999999999997776 44777 6777788899999999999999987765 456544433
Q ss_pred HHH
Q 047767 591 SLL 593 (666)
Q Consensus 591 ~l~ 593 (666)
.|-
T Consensus 522 ~l~ 524 (822)
T PRK14574 522 ELD 524 (822)
T ss_pred HHH
Confidence 333
No 30
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.78 E-value=7.1e-14 Score=139.98 Aligned_cols=585 Identities=12% Similarity=0.034 Sum_probs=339.7
Q ss_pred cCCChhhHHHHhhcCCC---CCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHH
Q 047767 56 KSGHLNSAKKLFDEMPA---RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQI 132 (666)
Q Consensus 56 ~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~ 132 (666)
-+|++++|.+++.++.+ .+...|..|...|-..|+.+++...+-..-..+ +-|...|..+.......|+++.|.-.
T Consensus 151 arg~~eeA~~i~~EvIkqdp~~~~ay~tL~~IyEqrGd~eK~l~~~llAAHL~-p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 151 ARGDLEEAEEILMEVIKQDPRNPIAYYTLGEIYEQRGDIEKALNFWLLAAHLN-PKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred HhCCHHHHHHHHHHHHHhCccchhhHHHHHHHHHHcccHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHhcccHHHHHHH
Confidence 34666666666666653 245566666666666666666666554444332 23445566666666666666666666
Q ss_pred HHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCc----c----cHHHHHHHHHhcCCchHHHHHHHHHHH
Q 047767 133 HCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNL----A----TWNLMLRAFCELSRPDEVLRMYNKMKA 204 (666)
Q Consensus 133 ~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~----~----~~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (666)
|.+.++.. +++....-.-...|-+.|+...|.+-|.++.+.++ . .--.+++.+...++-+.|++.++....
T Consensus 230 y~rAI~~~-p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s 308 (895)
T KOG2076|consen 230 YSRAIQAN-PSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALS 308 (895)
T ss_pred HHHHHhcC-CcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 66666654 34444444455566666666666666655544111 1 112233444445555666666555544
Q ss_pred c-CCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhC--------------------------CCCchHHH-HHHHHHH
Q 047767 205 E-GVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG--------------------------WVDVNIFV-ANALVDF 256 (666)
Q Consensus 205 ~-~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~--------------------------~~~~~~~~-~~~l~~~ 256 (666)
. +-..+..++++++..+.+...++.+........... ...++..+ ...+--.
T Consensus 309 ~~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~ 388 (895)
T KOG2076|consen 309 KEKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLV 388 (895)
T ss_pred hccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhh
Confidence 2 122233345555555555555555555554444310 02333333 1111112
Q ss_pred HHccCChHHHHHHhccC----CCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhH
Q 047767 257 YSACGSLIEAKKSFDFI----PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFG 332 (666)
Q Consensus 257 ~~~~~~~~~A~~~~~~~----~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a 332 (666)
..+.++..++..-|-.. +..++..|.-+..+|...|++.+|+.+|..+.....--+...|-.+..++...|..+.|
T Consensus 389 ~L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 389 HLKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQNAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred cccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCccccchhhhHHHHHHHHHHhhHHHH
Confidence 22333444444333221 12355677788888888889999998888888766555666778888888888888888
Q ss_pred HHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcc------------cHHHHHHHHHhcCChhHHH
Q 047767 333 KQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE------------CCNSLMTSLLHSGNIKDAV 400 (666)
Q Consensus 333 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~------------~~~~li~~~~~~~~~~~a~ 400 (666)
...++.+.... |++..+-..|...+.+.|+.++|.+.+..+..+|.. ..-.....+.+.|+.++=+
T Consensus 469 ~e~y~kvl~~~--p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLILA--PDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDILFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhcC--CCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHHHHHhhhHHHHH
Confidence 88888888754 447788889999999999999999999987766522 1223445677788888876
Q ss_pred HHHHHHHHcC-----CCCCH-----------------HHHHHHhchhhhhcccchhhHHHH------HHHHHHhCCCCch
Q 047767 401 EMFGFMVDEG-----IGLDE-----------------VTLSTTLKALSVSASANLGSCRLL------HCCAIKSGFESNI 452 (666)
Q Consensus 401 ~~~~~m~~~~-----~~p~~-----------------~~~~~ll~~~~~~~~~~~~~a~~~------~~~~~~~~~~~~~ 452 (666)
.+...|...+ +-|+. .+.-.++.+ ....++......- ......+++..+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~--~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsidd 624 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRA--REKATDDNVMEKALSDGTEFRAVELRGLSIDD 624 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHH--HhccCchHHhhhcccchhhhhhhhhccCcHHH
Confidence 6666665432 11111 111111111 1111111111100 0011112222221
Q ss_pred --HHHHHHHHHHHhhCCHHHHHHHhccCCC------CCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHc-CC--CCCH
Q 047767 453 --AVSCSLMDAYSRCGHIELSHQVFEKIPS------PNV---VCFTSIMNGYSRNGMGREALDMLEVMIQR-GL--IPDK 518 (666)
Q Consensus 453 --~~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~--~p~~ 518 (666)
..+.-++..+++.++.++|..+...+.. ++. ..-...+.+.+..+++.+|...++.|... +. .|..
T Consensus 625 wfel~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q 704 (895)
T KOG2076|consen 625 WFELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQ 704 (895)
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHH
Confidence 3455677788899999999998887764 221 23445567778899999999999999874 11 3433
Q ss_pred H-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHH
Q 047767 519 V-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD--RQHYSCMIDMLGRAGILDKAEELLQQT-PGGGDCMMWSSLLR 594 (666)
Q Consensus 519 ~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~ 594 (666)
. .|+..++.+.+.++-.--..++..+... .|+ +..+......+...+.+.-|+..+-.+ ...||.+..+..+.
T Consensus 705 ~~l~n~~~s~~~~~~q~v~~~R~~~~~~~~---~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lg 781 (895)
T KOG2076|consen 705 LNLWNLDFSYFSKYGQRVCYLRLIMRLLVK---NKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLG 781 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---CccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHH
Confidence 3 4554556666655544444444443322 333 233333344556778888888765433 35565444444333
Q ss_pred H-HH----------hhCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 595 S-CR----------VHGNEIIGRRVANILMELEPV--DFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 595 ~-~~----------~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
. +. ++-..-+++.++++..++... ...+++++|.+|-..|=..-|+++|++..+-
T Consensus 782 lafih~a~qr~v~~Rh~~i~qG~afL~RY~~lR~~~~~QEa~YNigRayh~~gl~~LA~~YYekvL~~ 849 (895)
T KOG2076|consen 782 LAFIHLALQRRVSNRHAQIAQGFAFLKRYKELRRCEEKQEAFYNIGRAYHQIGLVHLAVSYYEKVLEV 849 (895)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhCC
Confidence 2 21 112355677888777775544 6789999999999999999999999988764
No 31
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.75 E-value=1.6e-15 Score=139.42 Aligned_cols=170 Identities=14% Similarity=0.137 Sum_probs=142.2
Q ss_pred HHhhCCHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHH
Q 047767 462 YSRCGHIELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEG 537 (666)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a 537 (666)
+-..|++++|+..|-.+. ..+......+.+.|-...++.+|++++-+... +-| |+.....|...|-+.|+-..|
T Consensus 534 ~e~~~~ldeald~f~klh~il~nn~evl~qianiye~led~aqaie~~~q~~s--lip~dp~ilskl~dlydqegdksqa 611 (840)
T KOG2003|consen 534 AEALGNLDEALDCFLKLHAILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIPNDPAILSKLADLYDQEGDKSQA 611 (840)
T ss_pred HHHhcCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCCCCHHHHHHHHHHhhcccchhhh
Confidence 455678888888776654 35666777788888888999999999977665 555 555888899999999999999
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH-hhCChHHHHHHHHHHHhc
Q 047767 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSSLLRSCR-VHGNEIIGRRVANILMEL 615 (666)
Q Consensus 538 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~-~~~~~~~a~~~~~~~~~~ 615 (666)
.+.+..--+ -++-+.++...|...|....-+++|+.+|++.. ..|+..-|..++..|. +.|++..|.++|+.....
T Consensus 612 fq~~ydsyr--yfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 612 FQCHYDSYR--YFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASCFRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred hhhhhhccc--ccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHhcccHHHHHHHHHHHHHh
Confidence 998876543 345558999999999999999999999999765 7899999999998875 569999999999999999
Q ss_pred CCCCcchHHHHHHHHhhcCC
Q 047767 616 EPVDFAVYSQVSNFYSEIGE 635 (666)
Q Consensus 616 ~p~~~~~~~~l~~~~~~~g~ 635 (666)
.|.|..++-.|+.++-..|-
T Consensus 690 fpedldclkflvri~~dlgl 709 (840)
T KOG2003|consen 690 FPEDLDCLKFLVRIAGDLGL 709 (840)
T ss_pred CccchHHHHHHHHHhccccc
Confidence 99999999999999987775
No 32
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.74 E-value=5.6e-12 Score=121.77 Aligned_cols=622 Identities=11% Similarity=0.040 Sum_probs=390.8
Q ss_pred CCCccchHhHHhhh-----ccCCCccchhhhhhccc--CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCC---CCCch
Q 047767 7 LPRVRTITTLAPTC-----TSIVPLSSSLLLDSYCQ--PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP---ARDMV 76 (666)
Q Consensus 7 ~p~~~~~~~ll~~~-----~~~~~~~~a~~~~~~~~--~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~ 76 (666)
..|+..|..=|... ...+|...|+.++...+ ....|+.++-.+.+. -..|.+..|..+..+=- .++..
T Consensus 243 vvDpkgYLtdL~sm~p~~~~dl~DikKaR~llKSvretnP~hp~gWIAsArLE--EvagKl~~Ar~~I~~GCe~cprSeD 320 (913)
T KOG0495|consen 243 VVDPKGYLTDLNSMIPTSGGDLEDIKKARLLLKSVRETNPKHPPGWIASARLE--EVAGKLSVARNLIMKGCEECPRSED 320 (913)
T ss_pred ccCchHHHhHHHhcCCCccCcHHHHHHHHHHHHHHHhcCCCCCchHHHHHHHH--HHhhHHHHHHHHHHHHHhhCCchHH
Confidence 34666666655543 24456788888888887 444455555544443 56788888887775532 23444
Q ss_pred hHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhH
Q 047767 77 TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156 (666)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 156 (666)
.|-.-+ +...++.|..+.-...+. ++-++..|. .+.---.+...=.++++..+++ ++.++..|...+
T Consensus 321 vWLeai----RLhp~d~aK~vvA~Avr~-~P~Sv~lW~---kA~dLE~~~~~K~RVlRKALe~-iP~sv~LWKaAV---- 387 (913)
T KOG0495|consen 321 VWLEAI----RLHPPDVAKTVVANAVRF-LPTSVRLWL---KAADLESDTKNKKRVLRKALEH-IPRSVRLWKAAV---- 387 (913)
T ss_pred HHHHHH----hcCChHHHHHHHHHHHHh-CCCChhhhh---hHHhhhhHHHHHHHHHHHHHHh-CCchHHHHHHHH----
Confidence 444333 334555566665555543 122222222 2222222333334455555544 233333333322
Q ss_pred hcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHH
Q 047767 157 RMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSH 236 (666)
Q Consensus 157 ~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 236 (666)
...+.+.|.-++....+--..+ .-|.-++++..-++.|..++....+. ++.+...|.+-.+.--.+|+.+.+.+++..
T Consensus 388 elE~~~darilL~rAveccp~s-~dLwlAlarLetYenAkkvLNkaRe~-iptd~~IWitaa~LEE~ngn~~mv~kii~r 465 (913)
T KOG0495|consen 388 ELEEPEDARILLERAVECCPQS-MDLWLALARLETYENAKKVLNKAREI-IPTDREIWITAAKLEEANGNVDMVEKIIDR 465 (913)
T ss_pred hccChHHHHHHHHHHHHhccch-HHHHHHHHHHHHHHHHHHHHHHHHhh-CCCChhHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 2333344555544443310000 11223344455556666666665543 455555555555555555666666665554
Q ss_pred HH----HhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC------CCChhhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 047767 237 VI----KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP------VDDVISWNSIVSIYADYDLIFDALELFFRMQL 306 (666)
Q Consensus 237 ~~----~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (666)
-+ ..| +..+..-|..=...+-+.|..-.+..+..... +.--.+|..-...|.+.+.++-|..+|...++
T Consensus 466 gl~~L~~ng-v~i~rdqWl~eAe~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alq 544 (913)
T KOG0495|consen 466 GLSELQANG-VEINRDQWLKEAEACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQ 544 (913)
T ss_pred HHHHHhhcc-eeecHHHHHHHHHHHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHh
Confidence 32 234 55566666555555666665555555544432 11234566666666666666666666666554
Q ss_pred cCCCCC-hhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC---Cccc
Q 047767 307 CRKRPS-IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR---SLEC 382 (666)
Q Consensus 307 ~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~ 382 (666)
- -|. ...+......=-..|..+....+++.+..+-.+ ....+...+..+-..|++..|..++..+-+. +...
T Consensus 545 v--fp~k~slWlra~~~ek~hgt~Esl~Allqkav~~~pk--ae~lwlM~ake~w~agdv~~ar~il~~af~~~pnseei 620 (913)
T KOG0495|consen 545 V--FPCKKSLWLRAAMFEKSHGTRESLEALLQKAVEQCPK--AEILWLMYAKEKWKAGDVPAARVILDQAFEANPNSEEI 620 (913)
T ss_pred h--ccchhHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCCc--chhHHHHHHHHHHhcCCcHHHHHHHHHHHHhCCCcHHH
Confidence 2 232 233444444444456666666666666665443 4555556666666677777777766655332 3445
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 047767 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462 (666)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (666)
|-+-+.....+.+++.|..+|.+.... .|+...|.--... ....++.++|.++++...+. ++.-...|-.+.+.+
T Consensus 621 wlaavKle~en~e~eraR~llakar~~--sgTeRv~mKs~~~--er~ld~~eeA~rllEe~lk~-fp~f~Kl~lmlGQi~ 695 (913)
T KOG0495|consen 621 WLAAVKLEFENDELERARDLLAKARSI--SGTERVWMKSANL--ERYLDNVEEALRLLEEALKS-FPDFHKLWLMLGQIE 695 (913)
T ss_pred HHHHHHHhhccccHHHHHHHHHHHhcc--CCcchhhHHHhHH--HHHhhhHHHHHHHHHHHHHh-CCchHHHHHHHhHHH
Confidence 666666677777777777777776653 4555555444444 45566777777777555543 233345666677888
Q ss_pred HhhCCHHHHHHHhccCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHH
Q 047767 463 SRCGHIELSHQVFEKIPS--P-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539 (666)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 539 (666)
-+.++++.|...|..-.+ | .+..|-.|.+.--+.|..-.|..++++.+-.+ +-|...|...+..-.+.|+.+.|..
T Consensus 696 e~~~~ie~aR~aY~~G~k~cP~~ipLWllLakleEk~~~~~rAR~ildrarlkN-Pk~~~lwle~Ir~ElR~gn~~~a~~ 774 (913)
T KOG0495|consen 696 EQMENIEMAREAYLQGTKKCPNSIPLWLLLAKLEEKDGQLVRARSILDRARLKN-PKNALLWLESIRMELRAGNKEQAEL 774 (913)
T ss_pred HHHHHHHHHHHHHHhccccCCCCchHHHHHHHHHHHhcchhhHHHHHHHHHhcC-CCcchhHHHHHHHHHHcCCHHHHHH
Confidence 889999999999987765 4 46778888888888999999999999988753 3355689999999999999999999
Q ss_pred HHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 540 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
++.+..+. .+.+...|..-|....+.++-.+....+++... |......+...+.....++.|.+.|++++..+|++
T Consensus 775 lmakALQe--cp~sg~LWaEaI~le~~~~rkTks~DALkkce~--dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d~ 850 (913)
T KOG0495|consen 775 LMAKALQE--CPSSGLLWAEAIWLEPRPQRKTKSIDALKKCEH--DPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPDN 850 (913)
T ss_pred HHHHHHHh--CCccchhHHHHHHhccCcccchHHHHHHHhccC--CchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCcc
Confidence 99999885 445577888888888888888888888887774 44555667777888889999999999999999999
Q ss_pred cchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCcCCCceEEEe
Q 047767 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIEV 662 (666)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~ 662 (666)
..+|..+-..+...|.-++-.+++.+... .+|..|..|..|
T Consensus 851 GD~wa~fykfel~hG~eed~kev~~~c~~--~EP~hG~~W~av 891 (913)
T KOG0495|consen 851 GDAWAWFYKFELRHGTEEDQKEVLKKCET--AEPTHGELWQAV 891 (913)
T ss_pred chHHHHHHHHHHHhCCHHHHHHHHHHHhc--cCCCCCcHHHHH
Confidence 99999999999999999999999987764 345666666654
No 33
>KOG0495 consensus HAT repeat protein [RNA processing and modification]
Probab=99.73 E-value=4.5e-12 Score=122.45 Aligned_cols=538 Identities=13% Similarity=0.060 Sum_probs=384.1
Q ss_pred CChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhh
Q 047767 89 RHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLF 168 (666)
Q Consensus 89 ~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~ 168 (666)
++..+|.-+++..++.+ +-++..|.+-.+.--..|.+..|..+...--+. .+.+..+|..- ++....+.|..+.
T Consensus 265 ~DikKaR~llKSvretn-P~hp~gWIAsArLEEvagKl~~Ar~~I~~GCe~-cprSeDvWLea----iRLhp~d~aK~vv 338 (913)
T KOG0495|consen 265 EDIKKARLLLKSVRETN-PKHPPGWIASARLEEVAGKLSVARNLIMKGCEE-CPRSEDVWLEA----IRLHPPDVAKTVV 338 (913)
T ss_pred HHHHHHHHHHHHHHhcC-CCCCchHHHHHHHHHHhhHHHHHHHHHHHHHhh-CCchHHHHHHH----HhcCChHHHHHHH
Confidence 46678888888888776 335666666665555667777776665443332 12333333322 2333444444444
Q ss_pred ccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHH
Q 047767 169 DELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIF 248 (666)
Q Consensus 169 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 248 (666)
-......+.+-..-+.+---..+...-.++++...+. .|++.. |-++.....+.+.|.-++....+. ++.+..
T Consensus 339 A~Avr~~P~Sv~lW~kA~dLE~~~~~K~RVlRKALe~--iP~sv~---LWKaAVelE~~~darilL~rAvec--cp~s~d 411 (913)
T KOG0495|consen 339 ANAVRFLPTSVRLWLKAADLESDTKNKKRVLRKALEH--IPRSVR---LWKAAVELEEPEDARILLERAVEC--CPQSMD 411 (913)
T ss_pred HHHHHhCCCChhhhhhHHhhhhHHHHHHHHHHHHHHh--CCchHH---HHHHHHhccChHHHHHHHHHHHHh--ccchHH
Confidence 3333211111111122211223333344566665554 344432 234445556666688888888887 566666
Q ss_pred HHHHHHHHHHccCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHH----hHhcCCCCChhhHHHHHH
Q 047767 249 VANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFR----MQLCRKRPSIRSFVEFLN 321 (666)
Q Consensus 249 ~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~ 321 (666)
.|.+|. +..-++.|.+++.... +.+...|-+-...=-.+|+.+....++.+ +...|+..+...+..=..
T Consensus 412 LwlAla----rLetYenAkkvLNkaRe~iptd~~IWitaa~LEE~ngn~~mv~kii~rgl~~L~~ngv~i~rdqWl~eAe 487 (913)
T KOG0495|consen 412 LWLALA----RLETYENAKKVLNKAREIIPTDREIWITAAKLEEANGNVDMVEKIIDRGLSELQANGVEINRDQWLKEAE 487 (913)
T ss_pred HHHHHH----HHHHHHHHHHHHHHHHhhCCCChhHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhcceeecHHHHHHHHH
Confidence 666554 4445667777665543 45677777766666778888888887765 456788888888888888
Q ss_pred HHhccCChhhHHHHHHHHHHhCCCCCc-hhHHhHHHHHHHhcCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChh
Q 047767 322 FASRTGNVYFGKQIHGYVTKLGFDHGS-VHVQSALTDMYGKCNVIESSVAVFESAPGR---SLECCNSLMTSLLHSGNIK 397 (666)
Q Consensus 322 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~ 397 (666)
+|...|.+-.+..+....+..|++..+ ..++..-.+.+.+.+.++-|..+|....+. +...|......--..|..+
T Consensus 488 ~~e~agsv~TcQAIi~avigigvEeed~~~tw~~da~~~~k~~~~~carAVya~alqvfp~k~slWlra~~~ek~hgt~E 567 (913)
T KOG0495|consen 488 ACEDAGSVITCQAIIRAVIGIGVEEEDRKSTWLDDAQSCEKRPAIECARAVYAHALQVFPCKKSLWLRAAMFEKSHGTRE 567 (913)
T ss_pred HHhhcCChhhHHHHHHHHHhhccccchhHhHHhhhHHHHHhcchHHHHHHHHHHHHhhccchhHHHHHHHHHHHhcCcHH
Confidence 999999999999999999988886543 367778888899999999999998877653 4456777777777788899
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhcc
Q 047767 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477 (666)
Q Consensus 398 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (666)
....+|++.... ++-....+...... .-..|+...|+.++..+.+.+.. +..++-+-+.......++++|..+|.+
T Consensus 568 sl~Allqkav~~-~pkae~lwlM~ake--~w~agdv~~ar~il~~af~~~pn-seeiwlaavKle~en~e~eraR~llak 643 (913)
T KOG0495|consen 568 SLEALLQKAVEQ-CPKAEILWLMYAKE--KWKAGDVPAARVILDQAFEANPN-SEEIWLAAVKLEFENDELERARDLLAK 643 (913)
T ss_pred HHHHHHHHHHHh-CCcchhHHHHHHHH--HHhcCCcHHHHHHHHHHHHhCCC-cHHHHHHHHHHhhccccHHHHHHHHHH
Confidence 999999998876 23333444433333 56679999999999988887643 778888888889999999999999988
Q ss_pred CC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-
Q 047767 478 IP--SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD- 553 (666)
Q Consensus 478 ~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 553 (666)
.. .++...|.--+....-.++.++|++++++..+ .-|+-. .|..+.+.+-+.++++.|...|..=.. .-|.
T Consensus 644 ar~~sgTeRv~mKs~~~er~ld~~eeA~rllEe~lk--~fp~f~Kl~lmlGQi~e~~~~ie~aR~aY~~G~k---~cP~~ 718 (913)
T KOG0495|consen 644 ARSISGTERVWMKSANLERYLDNVEEALRLLEEALK--SFPDFHKLWLMLGQIEEQMENIEMAREAYLQGTK---KCPNS 718 (913)
T ss_pred HhccCCcchhhHHHhHHHHHhhhHHHHHHHHHHHHH--hCCchHHHHHHHhHHHHHHHHHHHHHHHHHhccc---cCCCC
Confidence 76 47777887777777778999999999999888 567765 677788888899999999998877653 2455
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC-------------
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV------------- 618 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------- 618 (666)
+..|-.|.+.=.+.|.+-+|..++++.. .+| +...|...++.-.+.|+.+.|..+.-++++-.|.
T Consensus 719 ipLWllLakleEk~~~~~rAR~ildrarlkNPk~~~lwle~Ir~ElR~gn~~~a~~lmakALQecp~sg~LWaEaI~le~ 798 (913)
T KOG0495|consen 719 IPLWLLLAKLEEKDGQLVRARSILDRARLKNPKNALLWLESIRMELRAGNKEQAELLMAKALQECPSSGLLWAEAIWLEP 798 (913)
T ss_pred chHHHHHHHHHHHhcchhhHHHHHHHHHhcCCCcchhHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccchhHHHHHHhcc
Confidence 7888888888889999999999999765 344 7889999999999999999999998888887666
Q ss_pred -----------------CcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 619 -----------------DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 619 -----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
|+.+....+..+....++++|.+.|.+....+..
T Consensus 799 ~~~rkTks~DALkkce~dphVllaia~lfw~e~k~~kar~Wf~Ravk~d~d 849 (913)
T KOG0495|consen 799 RPQRKTKSIDALKKCEHDPHVLLAIAKLFWSEKKIEKAREWFERAVKKDPD 849 (913)
T ss_pred CcccchHHHHHHHhccCCchhHHHHHHHHHHHHHHHHHHHHHHHHHccCCc
Confidence 5666777888888889999999999888765543
No 34
>KOG2076 consensus RNA polymerase III transcription factor TFIIIC [Transcription]
Probab=99.71 E-value=8.8e-13 Score=132.32 Aligned_cols=540 Identities=8% Similarity=-0.004 Sum_probs=317.2
Q ss_pred CCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHh
Q 047767 88 FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167 (666)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 167 (666)
.|+.++|..++.+.+... +.+...|.+|...|-..|+.+++...+-...- -.+.|...|..+.......|++++|.-.
T Consensus 152 rg~~eeA~~i~~EvIkqd-p~~~~ay~tL~~IyEqrGd~eK~l~~~llAAH-L~p~d~e~W~~ladls~~~~~i~qA~~c 229 (895)
T KOG2076|consen 152 RGDLEEAEEILMEVIKQD-PRNPIAYYTLGEIYEQRGDIEKALNFWLLAAH-LNPKDYELWKRLADLSEQLGNINQARYC 229 (895)
T ss_pred hCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHcccHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHhcccHHHHHHH
Confidence 488888888888887765 45777888888888888888887765544332 2355667888888888888888888888
Q ss_pred hccCCCCCcccHH---HHHHHHHhcCCchHHHHHHHHHHHcCCCCCHh----hHHHHHHHhcccCChHHHHHHHHHHHHh
Q 047767 168 FDELPERNLATWN---LMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL----SFCYMVRGCSIGMLLDEGKQLHSHVIKL 240 (666)
Q Consensus 168 ~~~~~~~~~~~~~---~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 240 (666)
|.+..+.++.-|- --+..|-+.|+...|.+.|.++.+..-+.|.. +-..+++.+...++-+.|.+.++.....
T Consensus 230 y~rAI~~~p~n~~~~~ers~L~~~~G~~~~Am~~f~~l~~~~p~~d~er~~d~i~~~~~~~~~~~~~e~a~~~le~~~s~ 309 (895)
T KOG2076|consen 230 YSRAIQANPSNWELIYERSSLYQKTGDLKRAMETFLQLLQLDPPVDIERIEDLIRRVAHYFITHNERERAAKALEGALSK 309 (895)
T ss_pred HHHHHhcCCcchHHHHHHHHHHHHhChHHHHHHHHHHHHhhCCchhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhh
Confidence 8877663333232 33445677888888888888887753222222 2222344455566667777777777664
Q ss_pred CCCCchHHHHHHHHHHHHccCChHHHHHHhccCCC----CChhhH----------------------H----HHHHHHHc
Q 047767 241 GWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV----DDVISW----------------------N----SIVSIYAD 290 (666)
Q Consensus 241 ~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~----~~~~~~----------------------~----~li~~~~~ 290 (666)
+.-..+...++.++..+.+...++.|......+.. +|..-| + -+.-++.+
T Consensus 310 ~~~~~~~ed~ni~ael~l~~~q~d~~~~~i~~~~~r~~e~d~~e~~~~~~~~~~~~~~~~~~~~~s~~l~v~rl~icL~~ 389 (895)
T KOG2076|consen 310 EKDEASLEDLNILAELFLKNKQSDKALMKIVDDRNRESEKDDSEWDTDERRREEPNALCEVGKELSYDLRVIRLMICLVH 389 (895)
T ss_pred ccccccccHHHHHHHHHHHhHHHHHhhHHHHHHhccccCCChhhhhhhhhccccccccccCCCCCCccchhHhHhhhhhc
Confidence 43455666777777788888888877776655432 222211 1 11222333
Q ss_pred CCChHHHHHHHHHhHhcCCCC--ChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 047767 291 YDLIFDALELFFRMQLCRKRP--SIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368 (666)
Q Consensus 291 ~g~~~~a~~~~~~m~~~~~~p--~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 368 (666)
....+....+........+.| +...|.-+..++...|.+..|..++..+....... +..+|..+.++|...|..+.|
T Consensus 390 L~~~e~~e~ll~~l~~~n~~~~d~~dL~~d~a~al~~~~~~~~Al~~l~~i~~~~~~~-~~~vw~~~a~c~~~l~e~e~A 468 (895)
T KOG2076|consen 390 LKERELLEALLHFLVEDNVWVSDDVDLYLDLADALTNIGKYKEALRLLSPITNREGYQ-NAFVWYKLARCYMELGEYEEA 468 (895)
T ss_pred ccccchHHHHHHHHHHhcCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHhcCcccc-chhhhHHHHHHHHHHhhHHHH
Confidence 333444444444444444333 34456777777777888888888877777654444 566777778888888888888
Q ss_pred HHHhccCCCCCcccH---HHHHHHHHhcCChhHHHHHHHHHHHc--------CCCCCHHHHHHHhchhhhhcccchhhHH
Q 047767 369 VAVFESAPGRSLECC---NSLMTSLLHSGNIKDAVEMFGFMVDE--------GIGLDEVTLSTTLKALSVSASANLGSCR 437 (666)
Q Consensus 369 ~~~~~~~~~~~~~~~---~~li~~~~~~~~~~~a~~~~~~m~~~--------~~~p~~~~~~~ll~~~~~~~~~~~~~a~ 437 (666)
...|..+..-++... -.|-..+.+.|+.++|++.+..+... +..|+.......... ....|+.+.-.
T Consensus 469 ~e~y~kvl~~~p~~~D~Ri~Lasl~~~~g~~EkalEtL~~~~~~D~~~~e~~a~~~e~ri~~~r~d~--l~~~gk~E~fi 546 (895)
T KOG2076|consen 469 IEFYEKVLILAPDNLDARITLASLYQQLGNHEKALETLEQIINPDGRNAEACAWEPERRILAHRCDI--LFQVGKREEFI 546 (895)
T ss_pred HHHHHHHHhcCCCchhhhhhHHHHHHhcCCHHHHHHHHhcccCCCccchhhccccHHHHHHHHHHHH--HHHhhhHHHHH
Confidence 777777655433333 33445667778888888777775421 122332222222222 34445544444
Q ss_pred HHHHHHHHhC-----CCC-----------------chHHHHHHHHHHHhhCCHHHHHHHhccC--------CCCCH----
Q 047767 438 LLHCCAIKSG-----FES-----------------NIAVSCSLMDAYSRCGHIELSHQVFEKI--------PSPNV---- 483 (666)
Q Consensus 438 ~~~~~~~~~~-----~~~-----------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~--------~~~~~---- 483 (666)
.....+.... +-| .....-.++.+-.+.++......-...- ...+.
T Consensus 547 ~t~~~Lv~~~~~~~~~f~~~~k~r~~~~~~~~~~~~~~~~~~~~~~~~k~~~~~~~~~~l~d~~~~~~~e~~~Lsiddwf 626 (895)
T KOG2076|consen 547 NTASTLVDDFLKKRYIFPRNKKKRRRAIAGTTSKRYSELLKQIIRAREKATDDNVMEKALSDGTEFRAVELRGLSIDDWF 626 (895)
T ss_pred HHHHHHHHHHHHHHHhcchHHHHHHHhhccccccccchhHHHHHHHHhccCchHHhhhcccchhhhhhhhhccCcHHHHH
Confidence 4333333211 101 0011111122222222221111111111 00111
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCH-H-HH-HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC---ch
Q 047767 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGL--IPDK-V-TF-LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD---RQ 555 (666)
Q Consensus 484 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~-~-~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~ 555 (666)
..+.-++.++++.+++++|+.+...+....+ .++. . .+ ...+.++...+++..|...++.|...++...+ ..
T Consensus 627 el~~e~i~~L~k~~r~qeAl~vv~~a~~~~~f~~~~~~~k~l~~~~l~~s~~~~d~~~a~~~lR~~i~~~~~~~~~~q~~ 706 (895)
T KOG2076|consen 627 ELFRELILSLAKLQRVQEALSVVFTALEAYIFFQDSEIRKELQFLGLKASLYARDPGDAFSYLRSVITQFQFYLDVYQLN 706 (895)
T ss_pred HHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhccHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHhhhhhhHHHH
Confidence 2345567788899999999999988876432 2222 1 22 33445667888999999999999877555444 44
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHHHHH--HHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQ-TPGGGDCMMWSSLLR--SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~l~~--~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 632 (666)
.|+.......+.|+-.-=..++.. +..+|+......++. .....+.+.-|+..|-++...+|++|-+-..+|-++.+
T Consensus 707 l~n~~~s~~~~~~q~v~~~R~~~~~~~~~~~~~~~l~~i~gh~~~~~~s~~~Al~~y~ra~~~~pd~Pl~nl~lglafih 786 (895)
T KOG2076|consen 707 LWNLDFSYFSKYGQRVCYLRLIMRLLVKNKDDTPPLALIYGHNLFVNASFKHALQEYMRAFRQNPDSPLINLCLGLAFIH 786 (895)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhccCccCCcceeeeechhHhhccchHHHHHHHHHHHHhCCCCcHHHHHHHHHHHH
Confidence 555455555555543333333333 333443322222333 34567888889999999999999998887777766643
No 35
>KOG4318 consensus Bicoid mRNA stability factor [RNA processing and modification]
Probab=99.71 E-value=1.4e-13 Score=137.23 Aligned_cols=519 Identities=12% Similarity=-0.017 Sum_probs=298.0
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCC
Q 047767 96 YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN 175 (666)
Q Consensus 96 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~ 175 (666)
+++-.+...|+.|+..||..+|..|+..|+.+.|- +|..|.-...+.+..+++.++.+....++.+.+. +|.
T Consensus 11 nfla~~e~~gi~PnRvtyqsLiarYc~~gdieaat-if~fm~~ksLpv~e~vf~~lv~sh~~And~Enpk-------ep~ 82 (1088)
T KOG4318|consen 11 NFLALHEISGILPNRVTYQSLIARYCTKGDIEAAT-IFPFMEIKSLPVREGVFRGLVASHKEANDAENPK-------EPL 82 (1088)
T ss_pred hHHHHHHHhcCCCchhhHHHHHHHHcccCCCcccc-chhhhhcccccccchhHHHHHhcccccccccCCC-------CCc
Confidence 46667777788888888888888888888888777 8888877777777778888888877777776665 577
Q ss_pred cccHHHHHHHHHhcCCchH---HHHHHHHHH----HcCCCCCHhhHHHH--------------HHHhcccCChHHHHHHH
Q 047767 176 LATWNLMLRAFCELSRPDE---VLRMYNKMK----AEGVEPNGLSFCYM--------------VRGCSIGMLLDEGKQLH 234 (666)
Q Consensus 176 ~~~~~~li~~~~~~~~~~~---a~~~~~~m~----~~~~~p~~~t~~~l--------------l~~~~~~~~~~~a~~~~ 234 (666)
..+|..|..+|.+.||... +.+.+.... ..|+---..-+... +......|-++.+.+++
T Consensus 83 aDtyt~Ll~ayr~hGDli~fe~veqdLe~i~~sfs~~Gvgs~e~~fl~k~~c~p~~lpda~n~illlv~eglwaqllkll 162 (1088)
T KOG4318|consen 83 ADTYTNLLKAYRIHGDLILFEVVEQDLESINQSFSDHGVGSPERWFLMKIHCCPHSLPDAENAILLLVLEGLWAQLLKLL 162 (1088)
T ss_pred hhHHHHHHHHHHhccchHHHHHHHHHHHHHHhhhhhhccCcHHHHHHhhcccCcccchhHHHHHHHHHHHHHHHHHHHHH
Confidence 7788888888888887654 222111111 12221111111111 11122233444444444
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHc-cCChHHHHHHhccCC-CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCC
Q 047767 235 SHVIKLGWVDVNIFVANALVDFYSA-CGSLIEAKKSFDFIP-VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 312 (666)
..+....+..|... .++-... ...+++-........ .+++.+|.+++..-..+|+.+.|..++.+|.+.|++.+
T Consensus 163 ~~~Pvsa~~~p~~v----fLrqnv~~ntpvekLl~~cksl~e~~~s~~l~a~l~~alaag~~d~Ak~ll~emke~gfpir 238 (1088)
T KOG4318|consen 163 AKVPVSAWNAPFQV----FLRQNVVDNTPVEKLLNMCKSLVEAPTSETLHAVLKRALAAGDVDGAKNLLYEMKEKGFPIR 238 (1088)
T ss_pred hhCCcccccchHHH----HHHHhccCCchHHHHHHHHHHhhcCCChHHHHHHHHHHHhcCchhhHHHHHHHHHHcCCCcc
Confidence 43332221222221 1222222 122333333333333 37899999999999999999999999999999999999
Q ss_pred hhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHh
Q 047767 313 IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392 (666)
Q Consensus 313 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 392 (666)
.+-|..++-+ .++...++.++.-+...|+.| +..++.-.+..+...|....+.... + ....+++-..+-+-
T Consensus 239 ~HyFwpLl~g---~~~~q~~e~vlrgmqe~gv~p-~seT~adyvip~l~N~~t~~~~e~s----q-~~hg~tAavrsaa~ 309 (1088)
T KOG4318|consen 239 AHYFWPLLLG---INAAQVFEFVLRGMQEKGVQP-GSETQADYVIPQLSNGQTKYGEEGS----Q-LAHGFTAAVRSAAC 309 (1088)
T ss_pred cccchhhhhc---CccchHHHHHHHHHHHhcCCC-CcchhHHHHHhhhcchhhhhccccc----c-hhhhhhHHHHHHHh
Confidence 9888887766 888899999999999999999 7777776666666655533322211 1 11112222222222
Q ss_pred cC-----Ch-----hHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCC---CchHHHHHHH
Q 047767 393 SG-----NI-----KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE---SNIAVSCSLM 459 (666)
Q Consensus 393 ~~-----~~-----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~ 459 (666)
.| +. .-....+++..-.|+......|.....- ...|.-+...++...+...... .+...+..++
T Consensus 310 rg~~a~k~l~~nl~~~v~~s~k~~fLlg~d~~~aiws~c~~l---~hQgk~e~veqlvg~l~npt~r~s~~~V~a~~~~l 386 (1088)
T KOG4318|consen 310 RGLLANKRLRQNLRKSVIGSTKKLFLLGTDILEAIWSMCEKL---RHQGKGEEVEQLVGQLLNPTLRDSGQNVDAFGALL 386 (1088)
T ss_pred cccHhHHHHHHHHHHHHHHHhhHHHHhccccchHHHHHHHHH---HHcCCCchHHHHHhhhcCCccccCcchHHHHHHHH
Confidence 22 11 1122222222223433333333332221 2244444444444444322111 1222232222
Q ss_pred HHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHH---------------cCChhHHHHHHHHHHHc----CCCC----
Q 047767 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSR---------------NGMGREALDMLEVMIQR----GLIP---- 516 (666)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~---------------~~~~~~a~~~~~~m~~~----g~~p---- 516 (666)
.++|.++..+........-.+... .-+...+++-+...... -..|
T Consensus 387 ------------rqyFrr~e~~~~~~i~~~~qgls~~l~se~tp~vsell~~lrkns~lr~lv~Lss~Eler~he~~~~~ 454 (1088)
T KOG4318|consen 387 ------------RQYFRRIERHICSRIYYAGQGLSLNLNSEDTPRVSELLENLRKNSFLRQLVGLSSTELERSHEPWPLI 454 (1088)
T ss_pred ------------HHHHHHHHhhHHHHHHHHHHHHHhhhchhhhHHHHHHHHHhCcchHHHHHhhhhHHHHhcccccchhh
Confidence 233333332221110001111111 11222222222111110 0111
Q ss_pred ---CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCC-----CHHH
Q 047767 517 ---DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG-----DCMM 588 (666)
Q Consensus 517 ---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-----~~~~ 588 (666)
-...-+.++..|++.-+..++...-+..... -+ ...|..|++.+....+.+.|..+.++..... |..-
T Consensus 455 ~h~irdi~~ql~l~l~se~n~lK~l~~~ekye~~-lf---~g~ya~Li~l~~~hdkle~Al~~~~e~d~~d~s~~Ld~~~ 530 (1088)
T KOG4318|consen 455 AHLIRDIANQLHLTLNSEYNKLKILCDEEKYEDL-LF---AGLYALLIKLMDLHDKLEYALSFVDEIDTRDESIHLDLPL 530 (1088)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-Hh---hhHHHHHhhhHHHHHHHHHHHhchhhhcccchhhhcccHh
Confidence 1112445566666666666666655555443 22 2778999999999999999999998877222 5566
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHh---cCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCcC
Q 047767 589 WSSLLRSCRVHGNEIIGRRVANILME---LEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654 (666)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 654 (666)
+..+.+...+.+....+..+++++.+ ..|.-......+.......|+.+.-.++++-+...|+..+
T Consensus 531 m~~l~dLL~r~~~l~dl~tiL~e~ks~a~n~~~~a~~~f~~lns~a~agqqe~Lkkl~d~lvslgl~et 599 (1088)
T KOG4318|consen 531 MTSLQDLLQRLAILYDLSTILYEDKSSAENEPLVAIILFPLLNSGAPAGQQEKLKKLADILVSLGLSET 599 (1088)
T ss_pred HHHHHHHHHHhHHHHHHHHHHhhhhHHhhCCchHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhhc
Confidence 77788888888888889999888776 3344456667777777888999999999999999988773
No 36
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.65 E-value=5.5e-16 Score=147.19 Aligned_cols=214 Identities=17% Similarity=0.109 Sum_probs=114.7
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHH
Q 047767 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLE 507 (666)
Q Consensus 430 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~ 507 (666)
.++.+.|...++.+...+.. ++..+..++.. ...+++++|.+++...-+ ++...+..++..+...++++++..+++
T Consensus 57 ~~~~~~A~~ay~~l~~~~~~-~~~~~~~l~~l-~~~~~~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~ 134 (280)
T PF13429_consen 57 LGDYDEAIEAYEKLLASDKA-NPQDYERLIQL-LQDGDPEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLE 134 (280)
T ss_dssp ---------------------------------------------------------------H-HHHTT-HHHHHHHHH
T ss_pred cccccccccccccccccccc-ccccccccccc-cccccccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHH
Confidence 34444444444444333222 33445555555 678899999988877643 667778888899999999999999999
Q ss_pred HHHHcC-CCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CC
Q 047767 508 VMIQRG-LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP--GG 583 (666)
Q Consensus 508 ~m~~~g-~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~ 583 (666)
++.... .+++...|..+...+.+.|+.++|.+.+++..+. .|+ ......++..+...|+.+++.++++... .+
T Consensus 135 ~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~---~P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~ 211 (280)
T PF13429_consen 135 KLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKALEL---DPDDPDARNALAWLLIDMGDYDEAREALKRLLKAAP 211 (280)
T ss_dssp HHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHHHHH----TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-H
T ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCc
Confidence 987633 3445667888888999999999999999999976 676 7888899999999999999888887654 23
Q ss_pred CCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.+...|..+..++...|+.++|+..++++.+.+|+|+.+..+++.++...|+.++|.++++++..
T Consensus 212 ~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~~~p~d~~~~~~~a~~l~~~g~~~~A~~~~~~~~~ 276 (280)
T PF13429_consen 212 DDPDLWDALAAAYLQLGRYEEALEYLEKALKLNPDDPLWLLAYADALEQAGRKDEALRLRRQALR 276 (280)
T ss_dssp TSCCHCHHHHHHHHHHT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHT-----------------
T ss_pred CHHHHHHHHHHHhcccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence 46677889999999999999999999999999999999999999999999999999999887643
No 37
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.63 E-value=1.9e-12 Score=120.74 Aligned_cols=410 Identities=13% Similarity=0.046 Sum_probs=255.9
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-HhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 047767 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPN-GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258 (666)
Q Consensus 180 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (666)
-....-|.++|.+++|++.|....+. .|| +..|...-.+|...|+|+++.+.-...++.+ |.-...+..-..++-
T Consensus 119 K~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~E 194 (606)
T KOG0547|consen 119 KTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAHE 194 (606)
T ss_pred HhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHHH
Confidence 33445677888899999999888874 677 5666666667788889888888877777765 555667777777888
Q ss_pred ccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHh---------Hhc--CCCCChhhHHHHHHHHhccC
Q 047767 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM---------QLC--RKRPSIRSFVEFLNFASRTG 327 (666)
Q Consensus 259 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m---------~~~--~~~p~~~t~~~ll~~~~~~~ 327 (666)
..|++++|+.- .+-..+...|....-.--+.+++++. ... .+-|+.....+....+...-
T Consensus 195 ~lg~~~eal~D---------~tv~ci~~~F~n~s~~~~~eR~Lkk~a~~ka~e~~k~nr~p~lPS~~fi~syf~sF~~~~ 265 (606)
T KOG0547|consen 195 QLGKFDEALFD---------VTVLCILEGFQNASIEPMAERVLKKQAMKKAKEKLKENRPPVLPSATFIASYFGSFHADP 265 (606)
T ss_pred hhccHHHHHHh---------hhHHHHhhhcccchhHHHHHHHHHHHHHHHHHHhhcccCCCCCCcHHHHHHHHhhccccc
Confidence 88888888642 22333334443333333333333321 111 12233322222222221100
Q ss_pred ChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH
Q 047767 328 NVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV 407 (666)
Q Consensus 328 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 407 (666)
......+ .......+...+.. +... . ...+..|.+.+.+-.
T Consensus 266 ------------~~~~~~~-~~ksDa~l~~~l~~----------l~~~---~-------------~e~Y~~a~~~~te~~ 306 (606)
T KOG0547|consen 266 ------------KPLFDNK-SDKSDAALAEALEA----------LEKG---L-------------EEGYLKAYDKATEEC 306 (606)
T ss_pred ------------cccccCC-CccchhhHHHHHHH----------HHhh---C-------------chhHHHHHHHHHHHh
Confidence 0000000 00011111111100 0000 0 011222222221111
Q ss_pred Hc-CCCCCHH---------HHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhcc
Q 047767 408 DE-GIGLDEV---------TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477 (666)
Q Consensus 408 ~~-~~~p~~~---------~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (666)
.. ...++.. .-..++.+...--.|+.-.+..-++..++....++. .|--+..+|....+.++.+..|..
T Consensus 307 ~~~~~~~~~n~~d~~le~~A~al~~~gtF~fL~g~~~~a~~d~~~~I~l~~~~~~-lyI~~a~~y~d~~~~~~~~~~F~~ 385 (606)
T KOG0547|consen 307 LGSESSLSVNEIDAELEYMAEALLLRGTFHFLKGDSLGAQEDFDAAIKLDPAFNS-LYIKRAAAYADENQSEKMWKDFNK 385 (606)
T ss_pred hhhhhhccccccchhHHHHHHHHHHhhhhhhhcCCchhhhhhHHHHHhcCcccch-HHHHHHHHHhhhhccHHHHHHHHH
Confidence 00 0000000 111122221133345666666666666665544333 154556678888999999999987
Q ss_pred CCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC
Q 047767 478 IPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553 (666)
Q Consensus 478 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 553 (666)
..+ .|+.+|..-...+.-.+++++|..=|++.++ +.|+.. .|..+..+..+.++++++...|++.+.+ ++--
T Consensus 386 A~~ldp~n~dvYyHRgQm~flL~q~e~A~aDF~Kai~--L~pe~~~~~iQl~~a~Yr~~k~~~~m~~Fee~kkk--FP~~ 461 (606)
T KOG0547|consen 386 AEDLDPENPDVYYHRGQMRFLLQQYEEAIADFQKAIS--LDPENAYAYIQLCCALYRQHKIAESMKTFEEAKKK--FPNC 461 (606)
T ss_pred HHhcCCCCCchhHhHHHHHHHHHHHHHHHHHHHHHhh--cChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh--CCCC
Confidence 764 4677788777777888899999999999998 777654 7878887888999999999999999986 4444
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---------HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchH
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGD---------CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 623 (666)
++.|+.....+..++++++|.+.++... ..|+ ..+...++..- -.+++.+|+.+++++++++|....+|
T Consensus 462 ~Evy~~fAeiLtDqqqFd~A~k~YD~ai~LE~~~~~~~v~~~plV~Ka~l~~q-wk~d~~~a~~Ll~KA~e~Dpkce~A~ 540 (606)
T KOG0547|consen 462 PEVYNLFAEILTDQQQFDKAVKQYDKAIELEPREHLIIVNAAPLVHKALLVLQ-WKEDINQAENLLRKAIELDPKCEQAY 540 (606)
T ss_pred chHHHHHHHHHhhHHhHHHHHHHHHHHHhhccccccccccchhhhhhhHhhhc-hhhhHHHHHHHHHHHHccCchHHHHH
Confidence 8999999999999999999999998654 3332 22233333332 34899999999999999999999999
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHH
Q 047767 624 SQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 624 ~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
..|+..-.++|+.++|+++|++..
T Consensus 541 ~tlaq~~lQ~~~i~eAielFEksa 564 (606)
T KOG0547|consen 541 ETLAQFELQRGKIDEAIELFEKSA 564 (606)
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHH
Confidence 999999999999999999999764
No 38
>KOG2003 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.57 E-value=2.7e-11 Score=111.94 Aligned_cols=447 Identities=11% Similarity=0.051 Sum_probs=260.6
Q ss_pred HHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHH-HHHHhcccCChHHHHHHHHHHHHhCCCCch----HHHHHHHHHHHH
Q 047767 184 RAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCY-MVRGCSIGMLLDEGKQLHSHVIKLGWVDVN----IFVANALVDFYS 258 (666)
Q Consensus 184 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~-ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~ 258 (666)
.-|..+....+|+..|+-+.+..+-|+.-.... +-..+.+...+.+|.++++..+..- ...+ ..+.+.+.-.+.
T Consensus 209 qqy~~ndm~~ealntyeiivknkmf~nag~lkmnigni~~kkr~fskaikfyrmaldqv-psink~~rikil~nigvtfi 287 (840)
T KOG2003|consen 209 QQYEANDMTAEALNTYEIIVKNKMFPNAGILKMNIGNIHFKKREFSKAIKFYRMALDQV-PSINKDMRIKILNNIGVTFI 287 (840)
T ss_pred HHhhhhHHHHHHhhhhhhhhcccccCCCceeeeeecceeeehhhHHHHHHHHHHHHhhc-cccchhhHHHHHhhcCeeEE
Confidence 334445556667777777776666666543322 2233556667777777777666552 1112 223333444566
Q ss_pred ccCChHHHHHHhccCC--CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhH--------HHHHHHHhccCC
Q 047767 259 ACGSLIEAKKSFDFIP--VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF--------VEFLNFASRTGN 328 (666)
Q Consensus 259 ~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~--------~~ll~~~~~~~~ 328 (666)
+.|.++.|+..|+... .|+..+--.|+-++...|+-++..+.|.+|..-...||..-| ..++.-..+...
T Consensus 288 q~gqy~dainsfdh~m~~~pn~~a~~nl~i~~f~i~d~ekmkeaf~kli~ip~~~dddkyi~~~ddp~~~ll~eai~nd~ 367 (840)
T KOG2003|consen 288 QAGQYDDAINSFDHCMEEAPNFIAALNLIICAFAIGDAEKMKEAFQKLIDIPGEIDDDKYIKEKDDPDDNLLNEAIKNDH 367 (840)
T ss_pred ecccchhhHhhHHHHHHhCccHHhhhhhhhhheecCcHHHHHHHHHHHhcCCCCCCcccccCCcCCcchHHHHHHHhhHH
Confidence 7777777777776554 344444333444455567777777777777654433333222 122221111111
Q ss_pred hh--------hHHHHH---HHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChh
Q 047767 329 VY--------FGKQIH---GYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397 (666)
Q Consensus 329 ~~--------~a~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 397 (666)
+. .|++.. -.++.--+.|+-..-+..-+...-.....+.|.. .. -.-...+.+.|+++
T Consensus 368 lk~~ek~~ka~aek~i~ta~kiiapvi~~~fa~g~dwcle~lk~s~~~~la~d---------le--i~ka~~~lk~~d~~ 436 (840)
T KOG2003|consen 368 LKNMEKENKADAEKAIITAAKIIAPVIAPDFAAGCDWCLESLKASQHAELAID---------LE--INKAGELLKNGDIE 436 (840)
T ss_pred HHHHHHhhhhhHHHHHHHHHHHhccccccchhcccHHHHHHHHHhhhhhhhhh---------hh--hhHHHHHHhccCHH
Confidence 00 011000 0000001111000000000000000000111110 00 11223577889999
Q ss_pred HHHHHHHHHHHcCCCCCHHHHH--HHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHh
Q 047767 398 DAVEMFGFMVDEGIGLDEVTLS--TTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475 (666)
Q Consensus 398 ~a~~~~~~m~~~~~~p~~~~~~--~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (666)
.|+++++-+.+..-+.-...-+ ..+.- .....++..|..+-+......-- +......-...-...|++++|.+.+
T Consensus 437 ~aieilkv~~~kdnk~~saaa~nl~~l~f--lqggk~~~~aqqyad~aln~dry-n~~a~~nkgn~~f~ngd~dka~~~y 513 (840)
T KOG2003|consen 437 GAIEILKVFEKKDNKTASAAANNLCALRF--LQGGKDFADAQQYADIALNIDRY-NAAALTNKGNIAFANGDLDKAAEFY 513 (840)
T ss_pred HHHHHHHHHHhccchhhHHHhhhhHHHHH--HhcccchhHHHHHHHHHhccccc-CHHHhhcCCceeeecCcHHHHHHHH
Confidence 9999988877654222221111 11221 23344555565555444322110 1111111111223468999999999
Q ss_pred ccCCCCCHHHHHHHHH---HHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCC
Q 047767 476 EKIPSPNVVCFTSIMN---GYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID 551 (666)
Q Consensus 476 ~~~~~~~~~~~~~li~---~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 551 (666)
++....|..+-.+|.+ .+-..|+.++|+..|-.+.. +-. +......+...|....+...|++++-+... -++
T Consensus 514 keal~ndasc~ealfniglt~e~~~~ldeald~f~klh~--il~nn~evl~qianiye~led~aqaie~~~q~~s--lip 589 (840)
T KOG2003|consen 514 KEALNNDASCTEALFNIGLTAEALGNLDEALDCFLKLHA--ILLNNAEVLVQIANIYELLEDPAQAIELLMQANS--LIP 589 (840)
T ss_pred HHHHcCchHHHHHHHHhcccHHHhcCHHHHHHHHHHHHH--HHHhhHHHHHHHHHHHHHhhCHHHHHHHHHHhcc--cCC
Confidence 9999888776655554 35678999999999977765 433 344677788888888999999999988774 355
Q ss_pred CCchHHHHHHHHHHhcCChHHHHHHH-HhCC-CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 047767 552 ADRQHYSCMIDMLGRAGILDKAEELL-QQTP-GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629 (666)
Q Consensus 552 p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 629 (666)
.|+..+..|.+.|-+.|+..+|.... +... ++.+..+...|...|....-.++|+..|+++.-+.|+.......++.+
T Consensus 590 ~dp~ilskl~dlydqegdksqafq~~ydsyryfp~nie~iewl~ayyidtqf~ekai~y~ekaaliqp~~~kwqlmiasc 669 (840)
T KOG2003|consen 590 NDPAILSKLADLYDQEGDKSQAFQCHYDSYRYFPCNIETIEWLAAYYIDTQFSEKAINYFEKAALIQPNQSKWQLMIASC 669 (840)
T ss_pred CCHHHHHHHHHHhhcccchhhhhhhhhhcccccCcchHHHHHHHHHHHhhHHHHHHHHHHHHHHhcCccHHHHHHHHHHH
Confidence 55999999999999999999999874 4455 344777777777778888888999999999999999877666777889
Q ss_pred HhhcCCchHHHHHHHHHHhC
Q 047767 630 YSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 630 ~~~~g~~~~A~~~~~~~~~~ 649 (666)
+.+.|+|.+|.++|+..+.+
T Consensus 670 ~rrsgnyqka~d~yk~~hrk 689 (840)
T KOG2003|consen 670 FRRSGNYQKAFDLYKDIHRK 689 (840)
T ss_pred HHhcccHHHHHHHHHHHHHh
Confidence 99999999999999988754
No 39
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.56 E-value=6e-13 Score=129.33 Aligned_cols=278 Identities=12% Similarity=0.060 Sum_probs=216.1
Q ss_pred ChHHHHHHhccCCCC--Cc-ccHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHhchhhhhcccchhhHHH
Q 047767 364 VIESSVAVFESAPGR--SL-ECCNSLMTSLLHSGNIKDAVEMFGFMVDEG--IGLDEVTLSTTLKALSVSASANLGSCRL 438 (666)
Q Consensus 364 ~~~~a~~~~~~~~~~--~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~~~~~~~~~~~a~~ 438 (666)
...+|...|..++.. |+ .....+..+|...+++++|..+|+.+.+.. .--+...|.+.|-.+ +-+-+..
T Consensus 334 ~~~~A~~~~~klp~h~~nt~wvl~q~GrayFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHL------q~~v~Ls 407 (638)
T KOG1126|consen 334 NCREALNLFEKLPSHHYNTGWVLSQLGRAYFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHL------QDEVALS 407 (638)
T ss_pred HHHHHHHHHHhhHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHH------HhhHHHH
Confidence 456777777775543 22 344567788888999999999999887753 112455666655431 1111122
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC
Q 047767 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP---NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI 515 (666)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~ 515 (666)
.+..-.-..-+..+.+|.++...|.-+++.+.|++.|++..+. ...+|+.+..-+.....++.|...|+..+. +.
T Consensus 408 ~Laq~Li~~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al~--~~ 485 (638)
T KOG1126|consen 408 YLAQDLIDTDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQLDPRFAYAYTLLGHESIATEEFDKAMKSFRKALG--VD 485 (638)
T ss_pred HHHHHHHhhCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhccCCccchhhhhcCChhhhhHHHHhHHHHHHhhhc--CC
Confidence 2222222233667899999999999999999999999998863 456777777778888999999999998876 66
Q ss_pred CCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHH
Q 047767 516 PDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSS 591 (666)
Q Consensus 516 p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~ 591 (666)
|... .|-.+...|.++++++.|+-.|+++. .+.|. ......+...+.+.|+.++|+.+++++. ..| |+..--.
T Consensus 486 ~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~---~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 486 PRHYNAWYGLGTVYLKQEKLEFAEFHFQKAV---EINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred chhhHHHHhhhhheeccchhhHHHHHHHhhh---cCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 6554 67778889999999999999999998 56887 6777788899999999999999999875 344 6655556
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
-+..+...+++++|+..+|++.+..|+++.++..+|.+|.+.|+.+.|+.-|..+.+...+
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~vP~es~v~~llgki~k~~~~~~~Al~~f~~A~~ldpk 623 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELVPQESSVFALLGKIYKRLGNTDLALLHFSWALDLDPK 623 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhCcchHHHHHHHHHHHHHHccchHHHHhhHHHhcCCCc
Confidence 6677788899999999999999999999999999999999999999999999887764443
No 40
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.54 E-value=8.6e-10 Score=102.97 Aligned_cols=450 Identities=10% Similarity=0.061 Sum_probs=308.9
Q ss_pred HhcCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHh-hHHHHHHHhcccCChHHHH
Q 047767 156 MRMGPSVRALDLFDELPE---RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL-SFCYMVRGCSIGMLLDEGK 231 (666)
Q Consensus 156 ~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-t~~~ll~~~~~~~~~~~a~ 231 (666)
...+++..|.++|+.... .+...|--.+..=.++.....|..++++.... .|-.. .|.-.+..--..|++..|.
T Consensus 84 esq~e~~RARSv~ERALdvd~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 84 ESQKEIQRARSVFERALDVDYRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred HhHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 344566667777776655 44555666666667777777777777776653 34332 2222333334567788888
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC--CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhc-C
Q 047767 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--VDDVISWNSIVSIYADYDLIFDALELFFRMQLC-R 308 (666)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~-~ 308 (666)
++|+.-.+ ..|+...|.+.|+.-.+-+.++.|..+++... .|++.+|--...-=-+.|....+..+|+...+. |
T Consensus 162 qiferW~~---w~P~eqaW~sfI~fElRykeieraR~IYerfV~~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~ 238 (677)
T KOG1915|consen 162 QIFERWME---WEPDEQAWLSFIKFELRYKEIERARSIYERFVLVHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLG 238 (677)
T ss_pred HHHHHHHc---CCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHheecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhh
Confidence 88877766 46888888888888888888888888887754 677777777777777788888888888776542 1
Q ss_pred C-CCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHh--------ccCCCCC
Q 047767 309 K-RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVF--------ESAPGRS 379 (666)
Q Consensus 309 ~-~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~--------~~~~~~~ 379 (666)
- ..+...|.++...=.+...++.|.-+++.+.++-.......++..+...--+.|+........ +.....|
T Consensus 239 ~d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n 318 (677)
T KOG1915|consen 239 DDEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN 318 (677)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC
Confidence 0 111223333333334577888899999998887655544667777777666677765554433 2222334
Q ss_pred cc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-----HHHH-hch--hhhhcccchhhHHHHHHHHHHhCC
Q 047767 380 LE---CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT-----LSTT-LKA--LSVSASANLGSCRLLHCCAIKSGF 448 (666)
Q Consensus 380 ~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-----~~~l-l~~--~~~~~~~~~~~a~~~~~~~~~~~~ 448 (666)
+. +|--.+..-...|+.+...++|++.+.. ++|-..- |..+ |+- +.-....|.+.+.+++....+ -+
T Consensus 319 p~nYDsWfdylrL~e~~g~~~~Ire~yErAIan-vpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~-lI 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRLEESVGDKDRIRETYERAIAN-VPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLD-LI 396 (677)
T ss_pred CCCchHHHHHHHHHHhcCCHHHHHHHHHHHHcc-CCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHh-hc
Confidence 43 5555667777789999999999998865 5552211 1111 111 013446788888888888877 45
Q ss_pred CCchHHHHHHHHHH----HhhCCHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHH
Q 047767 449 ESNIAVSCSLMDAY----SRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTF 521 (666)
Q Consensus 449 ~~~~~~~~~l~~~~----~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~ 521 (666)
|....+|.-+--+| .++.++..|.+++....- |...+|...|..-.+.++++.+..++++.++ ..|.. .+|
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG~cPK~KlFk~YIelElqL~efDRcRkLYEkfle--~~Pe~c~~W 474 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIGKCPKDKLFKGYIELELQLREFDRCRKLYEKFLE--FSPENCYAW 474 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhccCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh--cChHhhHHH
Confidence 66666666654444 367888999999887663 8888888889888999999999999999998 55644 578
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHH---
Q 047767 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSSLLRSCR--- 597 (666)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~--- 597 (666)
......-...|+.|.|..+|+-+.++..+..-...|.+.|+.=...|.+++|..+++.+. ..+...+|.+...--.
T Consensus 475 ~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~kvWisFA~fe~s~~ 554 (677)
T KOG1915|consen 475 SKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHVKVWISFAKFEASAS 554 (677)
T ss_pred HHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccchHHHhHHHHhcccc
Confidence 877777778899999999999998763333336677788888889999999999999876 4456667776665433
Q ss_pred --hhC-----------ChHHHHHHHHHHHh
Q 047767 598 --VHG-----------NEIIGRRVANILME 614 (666)
Q Consensus 598 --~~~-----------~~~~a~~~~~~~~~ 614 (666)
..+ +...|..+|+++..
T Consensus 555 ~~~~~~~~~~~e~~~~~~~~AR~iferAn~ 584 (677)
T KOG1915|consen 555 EGQEDEDLAELEITDENIKRARKIFERANT 584 (677)
T ss_pred ccccccchhhhhcchhHHHHHHHHHHHHHH
Confidence 233 56678888888766
No 41
>KOG1915 consensus Cell cycle control protein (crooked neck) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.53 E-value=3e-10 Score=105.89 Aligned_cols=446 Identities=13% Similarity=0.115 Sum_probs=326.7
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHH
Q 047767 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267 (666)
Q Consensus 188 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 267 (666)
..+++..|..+|++..... .-+...|.--+..-.+...+..|..+++..+.. +|.-...|-..+..--..|++..|.
T Consensus 85 sq~e~~RARSv~ERALdvd-~r~itLWlkYae~Emknk~vNhARNv~dRAvt~--lPRVdqlWyKY~ymEE~LgNi~gaR 161 (677)
T KOG1915|consen 85 SQKEIQRARSVFERALDVD-YRNITLWLKYAEFEMKNKQVNHARNVWDRAVTI--LPRVDQLWYKYIYMEEMLGNIAGAR 161 (677)
T ss_pred hHHHHHHHHHHHHHHHhcc-cccchHHHHHHHHHHhhhhHhHHHHHHHHHHHh--cchHHHHHHHHHHHHHHhcccHHHH
Confidence 4567788999999887643 233444555566667888999999999999987 5666677777777777889999999
Q ss_pred HHhccCC--CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHh-CC
Q 047767 268 KSFDFIP--VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-GF 344 (666)
Q Consensus 268 ~~~~~~~--~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~ 344 (666)
.+|+.-. +|+..+|++.|.-=.+-..++.|..+++...- +.|+..+|......=.+.|++..+..++..+++. |-
T Consensus 162 qiferW~~w~P~eqaW~sfI~fElRykeieraR~IYerfV~--~HP~v~~wikyarFE~k~g~~~~aR~VyerAie~~~~ 239 (677)
T KOG1915|consen 162 QIFERWMEWEPDEQAWLSFIKFELRYKEIERARSIYERFVL--VHPKVSNWIKYARFEEKHGNVALARSVYERAIEFLGD 239 (677)
T ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHhhHHHHHHHHHHHHhe--ecccHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhhh
Confidence 9998765 68999999999999999999999999999876 4699999999999889999999999999988773 43
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHhccC----CCCC-cccHHHHHHHHHhcCChh---HHHHH-----HHHHHHcCC
Q 047767 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESA----PGRS-LECCNSLMTSLLHSGNIK---DAVEM-----FGFMVDEGI 411 (666)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~----~~~~-~~~~~~li~~~~~~~~~~---~a~~~-----~~~m~~~~~ 411 (666)
+.....++.+++..-.++..++.|.-+|+-. ++.. ...|.....-=-+-|+.. +++-- ++.+...+
T Consensus 240 d~~~e~lfvaFA~fEe~qkE~ERar~iykyAld~~pk~raeeL~k~~~~fEKqfGd~~gIEd~Iv~KRk~qYE~~v~~n- 318 (677)
T KOG1915|consen 240 DEEAEILFVAFAEFEERQKEYERARFIYKYALDHIPKGRAEELYKKYTAFEKQFGDKEGIEDAIVGKRKFQYEKEVSKN- 318 (677)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHhcchhhhHHHHhhhhhhHHHHHHHhC-
Confidence 3324556667777777788889998887644 3321 223333333333344433 33322 33333332
Q ss_pred CCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCch-HHHHHHH--------HHHHhhCCHHHHHHHhccCCC--
Q 047767 412 GLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNI-AVSCSLM--------DAYSRCGHIELSHQVFEKIPS-- 480 (666)
Q Consensus 412 ~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~l~--------~~~~~~g~~~~A~~~~~~~~~-- 480 (666)
+-|-.++-..+.- ....|+.+...++++.++..-.+.+. ..|...| -.-....+.+.+.++|+...+
T Consensus 319 p~nYDsWfdylrL--~e~~g~~~~Ire~yErAIanvpp~~ekr~W~RYIYLWinYalyeEle~ed~ertr~vyq~~l~lI 396 (677)
T KOG1915|consen 319 PYNYDSWFDYLRL--EESVGDKDRIRETYERAIANVPPASEKRYWRRYIYLWINYALYEELEAEDVERTRQVYQACLDLI 396 (677)
T ss_pred CCCchHHHHHHHH--HHhcCCHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhc
Confidence 3345556666665 56678999999999988765433221 1121111 111346788899999987764
Q ss_pred C-CHHHHHHH----HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-c
Q 047767 481 P-NVVCFTSI----MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-R 554 (666)
Q Consensus 481 ~-~~~~~~~l----i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~ 554 (666)
| ...||..+ ..--.++.+...|.+++...+. .-|-..+|...|..-.+.+++|....++++..+ ..|. .
T Consensus 397 PHkkFtFaKiWlmyA~feIRq~~l~~ARkiLG~AIG--~cPK~KlFk~YIelElqL~efDRcRkLYEkfle---~~Pe~c 471 (677)
T KOG1915|consen 397 PHKKFTFAKIWLMYAQFEIRQLNLTGARKILGNAIG--KCPKDKLFKGYIELELQLREFDRCRKLYEKFLE---FSPENC 471 (677)
T ss_pred CcccchHHHHHHHHHHHHHHHcccHHHHHHHHHHhc--cCCchhHHHHHHHHHHHHhhHHHHHHHHHHHHh---cChHhh
Confidence 3 33444443 3334567899999999988765 789999999999999999999999999999985 3555 8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 630 (666)
.+|...+..=...|+++.|..+|+-....| ....|.+.+.--...|.++.|..+|+++++..+.. .+|...+..-
T Consensus 472 ~~W~kyaElE~~LgdtdRaRaifelAi~qp~ldmpellwkaYIdFEi~~~E~ekaR~LYerlL~rt~h~-kvWisFA~fe 550 (677)
T KOG1915|consen 472 YAWSKYAELETSLGDTDRARAIFELAISQPALDMPELLWKAYIDFEIEEGEFEKARALYERLLDRTQHV-KVWISFAKFE 550 (677)
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhcCcccccHHHHHHHhhhhhhhcchHHHHHHHHHHHHHhcccc-hHHHhHHHHh
Confidence 889888888899999999999999887777 34567777777778899999999999999988864 4887777665
Q ss_pred h-----hcC-----------CchHHHHHHHHHH
Q 047767 631 S-----EIG-----------EFEVSMQIRETAL 647 (666)
Q Consensus 631 ~-----~~g-----------~~~~A~~~~~~~~ 647 (666)
. ..| ....|..+|+.+.
T Consensus 551 ~s~~~~~~~~~~~~~e~~~~~~~~AR~iferAn 583 (677)
T KOG1915|consen 551 ASASEGQEDEDLAELEITDENIKRARKIFERAN 583 (677)
T ss_pred ccccccccccchhhhhcchhHHHHHHHHHHHHH
Confidence 5 344 5567788887654
No 42
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.52 E-value=3.6e-11 Score=119.50 Aligned_cols=223 Identities=10% Similarity=-0.003 Sum_probs=133.3
Q ss_pred HHHHHhcCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccc
Q 047767 356 TDMYGKCNVIESSVAVFESAPGR---SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432 (666)
Q Consensus 356 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 432 (666)
...+...|+.+.|...++...+. ++.....+...|.+.|++++|.+++..+.+.+..++. ....+-.
T Consensus 160 a~l~l~~g~~~~Al~~l~~~~~~~P~~~~al~ll~~~~~~~gdw~~a~~~l~~l~k~~~~~~~-~~~~l~~--------- 229 (398)
T PRK10747 160 VRIQLARNENHAARHGVDKLLEVAPRHPEVLRLAEQAYIRTGAWSSLLDILPSMAKAHVGDEE-HRAMLEQ--------- 229 (398)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHcCCCCHH-HHHHHHH---------
Confidence 45556666666666666555432 4445667778888888888888888888877643221 1111000
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 047767 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVM 509 (666)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m 509 (666)
..|..++.......+.+...++++.+++ .++.....+..++...|+.++|.+++++.
T Consensus 230 --------------------~a~~~l~~~~~~~~~~~~l~~~w~~lp~~~~~~~~~~~~~A~~l~~~g~~~~A~~~L~~~ 289 (398)
T PRK10747 230 --------------------QAWIGLMDQAMADQGSEGLKRWWKNQSRKTRHQVALQVAMAEHLIECDDHDTAQQIILDG 289 (398)
T ss_pred --------------------HHHHHHHHHHHHhcCHHHHHHHHHhCCHHHhCCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 0111122222333445556666666553 45666677777777777777777777777
Q ss_pred HHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH
Q 047767 510 IQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCM 587 (666)
Q Consensus 510 ~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~ 587 (666)
.+ ..||.... ++.+....++.+++.+..+...++ .|+ +..+..+...+.+.|++++|.+.|+... ..|+..
T Consensus 290 l~--~~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~---~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~P~~~ 362 (398)
T PRK10747 290 LK--RQYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQ---HGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQRPDAY 362 (398)
T ss_pred Hh--cCCCHHHH--HHHhhccCCChHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCCHH
Confidence 66 34444221 233334447777777777777654 344 4556666677777777777777766544 456666
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHhc
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILMEL 615 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 615 (666)
.+..+...+.+.|+.++|.+.+++.+.+
T Consensus 363 ~~~~La~~~~~~g~~~~A~~~~~~~l~~ 390 (398)
T PRK10747 363 DYAWLADALDRLHKPEEAAAMRRDGLML 390 (398)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 6666666666667777777666666553
No 43
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.51 E-value=2.8e-11 Score=115.43 Aligned_cols=258 Identities=12% Similarity=0.073 Sum_probs=160.8
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCCcc---cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhch
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE---CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 424 (666)
+..+...-.+-+...+++.+..++++.+...++. .+..-|.++...|+..+-..+=.+|.+.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--------------- 307 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEKDPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--------------- 307 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhhCCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh---------------
Confidence 4444455555555555666666555555443332 3333344555555555555444444443
Q ss_pred hhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CC-HHHHHHHHHHHHHcCChhH
Q 047767 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PN-VVCFTSIMNGYSRNGMGRE 501 (666)
Q Consensus 425 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~ 501 (666)
.|..+.+|-++.-.|.-.|+..+|.+.|.+... |. ...|-.+...|+-.|..++
T Consensus 308 -----------------------yP~~a~sW~aVg~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQ 364 (611)
T KOG1173|consen 308 -----------------------YPSKALSWFAVGCYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQ 364 (611)
T ss_pred -----------------------CCCCCcchhhHHHHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHH
Confidence 233445555565666666777777777776553 22 3567777777777777777
Q ss_pred HHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh
Q 047767 502 ALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQ 579 (666)
Q Consensus 502 a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (666)
|+..+....+. -|.. ..+..+.--|.+.++.+.|.++|.... ++.|+ +..++-+.-.....+.+.+|..+|+.
T Consensus 365 AmaaY~tAarl--~~G~hlP~LYlgmey~~t~n~kLAe~Ff~~A~---ai~P~Dplv~~Elgvvay~~~~y~~A~~~f~~ 439 (611)
T KOG1173|consen 365 AMAAYFTAARL--MPGCHLPSLYLGMEYMRTNNLKLAEKFFKQAL---AIAPSDPLVLHELGVVAYTYEEYPEALKYFQK 439 (611)
T ss_pred HHHHHHHHHHh--ccCCcchHHHHHHHHHHhccHHHHHHHHHHHH---hcCCCcchhhhhhhheeehHhhhHHHHHHHHH
Confidence 77777666552 2221 123344445667777777777777776 45555 66666666666667777777777765
Q ss_pred CC--------CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 580 TP--------GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 580 ~~--------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.. ..+ -.++++.|+.+|++.+.+++|+..+++++.+.|.++.++..+|.+|...|+.+.|++.|.+...
T Consensus 440 ~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~~~~~asig~iy~llgnld~Aid~fhKaL~ 517 (611)
T KOG1173|consen 440 ALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKDASTHASIGYIYHLLGNLDKAIDHFHKALA 517 (611)
T ss_pred HHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCchhHHHHHHHHHHHhcChHHHHHHHHHHHh
Confidence 43 111 2345677777777777888888888888888888877888888888888888888877776653
No 44
>PRK10747 putative protoheme IX biogenesis protein; Provisional
Probab=99.50 E-value=1.3e-11 Score=122.75 Aligned_cols=249 Identities=10% Similarity=0.034 Sum_probs=175.9
Q ss_pred HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHH
Q 047767 390 LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIE 469 (666)
Q Consensus 390 ~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 469 (666)
..+.|+++.|...+.++.+. .|+......+..+-.....|+.+.|...++...+.. +.++.....+...|.+.|+++
T Consensus 128 A~~~g~~~~A~~~l~~A~~~--~~~~~~~~~l~~a~l~l~~g~~~~Al~~l~~~~~~~-P~~~~al~ll~~~~~~~gdw~ 204 (398)
T PRK10747 128 AQQRGDEARANQHLERAAEL--ADNDQLPVEITRVRIQLARNENHAARHGVDKLLEVA-PRHPEVLRLAEQAYIRTGAWS 204 (398)
T ss_pred HHHCCCHHHHHHHHHHHHhc--CCcchHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHHhHH
Confidence 35566666666666666543 344332222221111455566666666666665554 445666777788899999999
Q ss_pred HHHHHhccCCCC---CHH--------HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHH
Q 047767 470 LSHQVFEKIPSP---NVV--------CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538 (666)
Q Consensus 470 ~A~~~~~~~~~~---~~~--------~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 538 (666)
+|.+++..+.+. +.. .|..++.......+.+...++|+.+-+. .+.+......+..++...|+.++|.
T Consensus 205 ~a~~~l~~l~k~~~~~~~~~~~l~~~a~~~l~~~~~~~~~~~~l~~~w~~lp~~-~~~~~~~~~~~A~~l~~~g~~~~A~ 283 (398)
T PRK10747 205 SLLDILPSMAKAHVGDEEHRAMLEQQAWIGLMDQAMADQGSEGLKRWWKNQSRK-TRHQVALQVAMAEHLIECDDHDTAQ 283 (398)
T ss_pred HHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHhCCHH-HhCCHHHHHHHHHHHHHCCCHHHHH
Confidence 999888887741 111 3333444444455666677777776442 3446668888999999999999999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
+.+++..+. .|+.... ++.+....++.+++.+..++.. ..| |...+..+...|...+++++|.+.|+++++..
T Consensus 284 ~~L~~~l~~---~~~~~l~--~l~~~l~~~~~~~al~~~e~~lk~~P~~~~l~l~lgrl~~~~~~~~~A~~~le~al~~~ 358 (398)
T PRK10747 284 QIILDGLKR---QYDERLV--LLIPRLKTNNPEQLEKVLRQQIKQHGDTPLLWSTLGQLLMKHGEWQEASLAFRAALKQR 358 (398)
T ss_pred HHHHHHHhc---CCCHHHH--HHHhhccCCChHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC
Confidence 999998854 5555333 2334446699999999998765 455 66678889999999999999999999999999
Q ss_pred CCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 617 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
|++ ..+..|+.++.+.|+.++|.+++++...
T Consensus 359 P~~-~~~~~La~~~~~~g~~~~A~~~~~~~l~ 389 (398)
T PRK10747 359 PDA-YDYAWLADALDRLHKPEEAAAMRRDGLM 389 (398)
T ss_pred CCH-HHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 975 5678899999999999999999987654
No 45
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.50 E-value=5.8e-11 Score=118.80 Aligned_cols=287 Identities=11% Similarity=0.022 Sum_probs=151.6
Q ss_pred cCCChHHHHHHHHHhHhcCCCCChhh-HHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 047767 290 DYDLIFDALELFFRMQLCRKRPSIRS-FVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368 (666)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~~p~~~t-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 368 (666)
..|+++.|.+.+.+..+. .|++.. +.....+....|+.+.+...+....+....+ ...+.......+...|+.+.|
T Consensus 96 ~~g~~~~A~~~l~~~~~~--~~~~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~-~l~~~~~~a~l~l~~~~~~~A 172 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADH--AAEPVLNLIKAAEAAQQRGDEARANQHLEEAAELAGND-NILVEIARTRILLAQNELHAA 172 (409)
T ss_pred hCCCHHHHHHHHHHHhhc--CCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcC-chHHHHHHHHHHHHCCCHHHH
Confidence 345666666666554432 233222 2223344445566666666665554432221 223334446666666677666
Q ss_pred HHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHH
Q 047767 369 VAVFESAPGR---SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445 (666)
Q Consensus 369 ~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 445 (666)
...++.+.+. ++.....+...+...|++++|.+.+..+.+.++.++ ..+..+-.
T Consensus 173 l~~l~~l~~~~P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k~~~~~~-~~~~~l~~---------------------- 229 (409)
T TIGR00540 173 RHGVDKLLEMAPRHKEVLKLAEEAYIRSGAWQALDDIIDNMAKAGLFDD-EEFADLEQ---------------------- 229 (409)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHHcCCCCH-HHHHHHHH----------------------
Confidence 6666655432 444566677777788888888888888877654322 11111000
Q ss_pred hCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH-
Q 047767 446 SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF- 521 (666)
Q Consensus 446 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~- 521 (666)
..+..++..-......+...+.++..++ .+...+..+...+...|+.++|.+++++..+ ..||....
T Consensus 230 -------~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~--~~pd~~~~~ 300 (409)
T TIGR00540 230 -------KAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLK--KLGDDRAIS 300 (409)
T ss_pred -------HHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHh--hCCCcccch
Confidence 0011111111122233444555555543 3677777777788888888888888888777 34544321
Q ss_pred --HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-c--hHHHHHHHHHHhcCChHHHHHHHHh---CCCCCCHHHHHHHH
Q 047767 522 --LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-R--QHYSCMIDMLGRAGILDKAEELLQQ---TPGGGDCMMWSSLL 593 (666)
Q Consensus 522 --~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~---~~~~~~~~~~~~l~ 593 (666)
..........++.+.+.+.++...+. .|+ + ....++...+.+.|++++|.+.|+. ....|+...+..+.
T Consensus 301 ~~~l~~~~~l~~~~~~~~~~~~e~~lk~---~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~~~~~~La 377 (409)
T TIGR00540 301 LPLCLPIPRLKPEDNEKLEKLIEKQAKN---VDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDANDLAMAA 377 (409)
T ss_pred hHHHHHhhhcCCCChHHHHHHHHHHHHh---CCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCHHHHHHHH
Confidence 11111223345566666666665543 333 2 4445566666666666666666662 22355555555555
Q ss_pred HHHHhhCChHHHHHHHHHHHh
Q 047767 594 RSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~ 614 (666)
..+.+.|+.++|.+++++.+.
T Consensus 378 ~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 378 DAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHcCCHHHHHHHHHHHHH
Confidence 556666666666666665443
No 46
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.48 E-value=3.4e-09 Score=102.86 Aligned_cols=312 Identities=14% Similarity=0.159 Sum_probs=174.9
Q ss_pred cCChHHHHHHHHHHHHhCCCCc------hHHHHHHHHHHHHccCChHHHHHHhccCCCCCh-------hhHHHHHHHHHc
Q 047767 224 GMLLDEGKQLHSHVIKLGWVDV------NIFVANALVDFYSACGSLIEAKKSFDFIPVDDV-------ISWNSIVSIYAD 290 (666)
Q Consensus 224 ~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~-------~~~~~li~~~~~ 290 (666)
.|+..+....+.++++. +.| -...|..+...|-..|+++.|+.+|+...+-+- ..|......=.+
T Consensus 360 e~~~~~~i~tyteAv~~--vdP~ka~Gs~~~Lw~~faklYe~~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElr 437 (835)
T KOG2047|consen 360 EGNAAEQINTYTEAVKT--VDPKKAVGSPGTLWVEFAKLYENNGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELR 437 (835)
T ss_pred cCChHHHHHHHHHHHHc--cCcccCCCChhhHHHHHHHHHHhcCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHh
Confidence 34556666666666654 222 134566777778888888888888877654322 234444444455
Q ss_pred CCChHHHHHHHHHhHhcCCCCC-----------------hhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHh
Q 047767 291 YDLIFDALELFFRMQLCRKRPS-----------------IRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQS 353 (666)
Q Consensus 291 ~g~~~~a~~~~~~m~~~~~~p~-----------------~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 353 (666)
..+++.|+++++......-.|. ...+...++.-...|-++..+.+++.+.+..+- .+.+..
T Consensus 438 h~~~~~Al~lm~~A~~vP~~~~~~~yd~~~pvQ~rlhrSlkiWs~y~DleEs~gtfestk~vYdriidLria--TPqii~ 515 (835)
T KOG2047|consen 438 HENFEAALKLMRRATHVPTNPELEYYDNSEPVQARLHRSLKIWSMYADLEESLGTFESTKAVYDRIIDLRIA--TPQIII 515 (835)
T ss_pred hhhHHHHHHHHHhhhcCCCchhhhhhcCCCcHHHHHHHhHHHHHHHHHHHHHhccHHHHHHHHHHHHHHhcC--CHHHHH
Confidence 6677777777666543211111 111222233333345555555555555555444 334444
Q ss_pred HHHHHHHhcCChHHHHHHhccCCC----CCcc-cHHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHhchh
Q 047767 354 ALTDMYGKCNVIESSVAVFESAPG----RSLE-CCNSLMTSLLH---SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425 (666)
Q Consensus 354 ~l~~~~~~~~~~~~a~~~~~~~~~----~~~~-~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 425 (666)
..+-.+-...-++++.+++++-.. |++. .|+..+..+.+ .-.++.|.++|++..+ |++|...-+..++-+
T Consensus 516 NyAmfLEeh~yfeesFk~YErgI~LFk~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA- 593 (835)
T KOG2047|consen 516 NYAMFLEEHKYFEESFKAYERGISLFKWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYA- 593 (835)
T ss_pred HHHHHHHhhHHHHHHHHHHHcCCccCCCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHH-
Confidence 444444445555555555554332 1221 34444444333 1234555555555554 444433332222222
Q ss_pred hhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----CCHHHHHHHHHHHHHcCChh
Q 047767 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----PNVVCFTSIMNGYSRNGMGR 500 (666)
Q Consensus 426 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~ 500 (666)
..--+.|-...|+.++++... .-...||+.|.--...=.+.
T Consensus 594 ----------------------------------~lEEe~GLar~amsiyerat~~v~~a~~l~myni~I~kaae~yGv~ 639 (835)
T KOG2047|consen 594 ----------------------------------KLEEEHGLARHAMSIYERATSAVKEAQRLDMYNIYIKKAAEIYGVP 639 (835)
T ss_pred ----------------------------------HHHHHhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHhCCc
Confidence 222344667778888887653 23457888887666655667
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHH---HHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 047767 501 EALDMLEVMIQRGLIPDKVTFLCVL---AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~~~~~~~l~---~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (666)
....+|++.++ .-||...-...+ ..-.+.|..++|..++....+-..-+.+...|.+.=..=.+.|+-+...+.+
T Consensus 640 ~TR~iYekaIe--~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 640 RTREIYEKAIE--SLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWDTWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred ccHHHHHHHHH--hCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHHHHHHHHHhcCCHHHHHHHH
Confidence 77889999998 578876544433 3456889999999999887664222334777888777778888854444443
No 47
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.48 E-value=4.2e-10 Score=104.83 Aligned_cols=311 Identities=11% Similarity=0.022 Sum_probs=210.2
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccH-HHHHHHHHhcCChhHHHHHH
Q 047767 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC-NSLMTSLLHSGNIKDAVEMF 403 (666)
Q Consensus 325 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~li~~~~~~~~~~~a~~~~ 403 (666)
..|....|...+...... -+..|.+......-..+.+.+..+...++..+.... -.+..++-...+.++++.-.
T Consensus 176 ~~~~~s~A~~sfv~~v~~-----~P~~W~AWleL~~lit~~e~~~~l~~~l~~~~h~M~~~F~~~a~~el~q~~e~~~k~ 250 (559)
T KOG1155|consen 176 ELGLLSLAIDSFVEVVNR-----YPWFWSAWLELSELITDIEILSILVVGLPSDMHWMKKFFLKKAYQELHQHEEALQKK 250 (559)
T ss_pred hhchHHHHHHHHHHHHhc-----CCcchHHHHHHHHhhchHHHHHHHHhcCcccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 345555555555544432 122233333333333344444443333333211111 11234555556777777777
Q ss_pred HHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCC--CchHHHHHHHHHHHhhCCHH-HHHHHhccCCC
Q 047767 404 GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMDAYSRCGHIE-LSHQVFEKIPS 480 (666)
Q Consensus 404 ~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~-~A~~~~~~~~~ 480 (666)
......|..-+...-+..-.+ .-...|++.|..+|+.+.+...- .+..+|..++-.-....++. .|..+++ +-+
T Consensus 251 e~l~~~gf~~~~~i~~~~A~~--~y~~rDfD~a~s~Feei~knDPYRl~dmdlySN~LYv~~~~skLs~LA~~v~~-idK 327 (559)
T KOG1155|consen 251 ERLSSVGFPNSMYIKTQIAAA--SYNQRDFDQAESVFEEIRKNDPYRLDDMDLYSNVLYVKNDKSKLSYLAQNVSN-IDK 327 (559)
T ss_pred HHHHhccCCccHHHHHHHHHH--HhhhhhHHHHHHHHHHHHhcCCCcchhHHHHhHHHHHHhhhHHHHHHHHHHHH-hcc
Confidence 777776654433222222222 56677888888888888776321 35666665543322222221 2333332 223
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHH
Q 047767 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYS 558 (666)
Q Consensus 481 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~ 558 (666)
--+.|..++.+-|.-.++.++|..+|++..+ +.|... .|+.+..-|...++...|++-++.+.+ +.| |-..|-
T Consensus 328 yR~ETCCiIaNYYSlr~eHEKAv~YFkRALk--LNp~~~~aWTLmGHEyvEmKNt~AAi~sYRrAvd---i~p~DyRAWY 402 (559)
T KOG1155|consen 328 YRPETCCIIANYYSLRSEHEKAVMYFKRALK--LNPKYLSAWTLMGHEYVEMKNTHAAIESYRRAVD---INPRDYRAWY 402 (559)
T ss_pred CCccceeeehhHHHHHHhHHHHHHHHHHHHh--cCcchhHHHHHhhHHHHHhcccHHHHHHHHHHHh---cCchhHHHHh
Confidence 3445666677778888999999999999998 677765 677777889999999999999999985 455 488899
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCc
Q 047767 559 CMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 636 (666)
.|.++|.-.+.+.=|+-+|++.. .+| |...|.+|+..|.+.++.++|++.|.++......+..++..|+.+|-+.++.
T Consensus 403 GLGQaYeim~Mh~YaLyYfqkA~~~kPnDsRlw~aLG~CY~kl~~~~eAiKCykrai~~~dte~~~l~~LakLye~l~d~ 482 (559)
T KOG1155|consen 403 GLGQAYEIMKMHFYALYYFQKALELKPNDSRLWVALGECYEKLNRLEEAIKCYKRAILLGDTEGSALVRLAKLYEELKDL 482 (559)
T ss_pred hhhHHHHHhcchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhccHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHhH
Confidence 99999999999999999999865 556 8899999999999999999999999999998888889999999999999999
Q ss_pred hHHHHHHHHHHh
Q 047767 637 EVSMQIRETALA 648 (666)
Q Consensus 637 ~~A~~~~~~~~~ 648 (666)
++|.+.|++-.+
T Consensus 483 ~eAa~~yek~v~ 494 (559)
T KOG1155|consen 483 NEAAQYYEKYVE 494 (559)
T ss_pred HHHHHHHHHHHH
Confidence 999999998765
No 48
>KOG1155 consensus Anaphase-promoting complex (APC), Cdc23 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.46 E-value=1e-09 Score=102.24 Aligned_cols=122 Identities=10% Similarity=0.141 Sum_probs=69.5
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhc
Q 047767 454 VSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCN 529 (666)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 529 (666)
.|+.+.+-|....+...|.+-++...+ .|-..|-.|.++|.-.+.+.-|+-+|++..+ .+|+ ...|.+|..+|.
T Consensus 366 aWTLmGHEyvEmKNt~AAi~sYRrAvdi~p~DyRAWYGLGQaYeim~Mh~YaLyYfqkA~~--~kPnDsRlw~aLG~CY~ 443 (559)
T KOG1155|consen 366 AWTLMGHEYVEMKNTHAAIESYRRAVDINPRDYRAWYGLGQAYEIMKMHFYALYYFQKALE--LKPNDSRLWVALGECYE 443 (559)
T ss_pred HHHHhhHHHHHhcccHHHHHHHHHHHhcCchhHHHHhhhhHHHHHhcchHHHHHHHHHHHh--cCCCchHHHHHHHHHHH
Confidence 344444555555566666666655443 3455566666666666666666666666665 4453 335666666666
Q ss_pred CCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHh
Q 047767 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQ 579 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (666)
+.++.++|++.|.....- | ..+...+..|++.|-+.++.++|...+++
T Consensus 444 kl~~~~eAiKCykrai~~-~-dte~~~l~~LakLye~l~d~~eAa~~yek 491 (559)
T KOG1155|consen 444 KLNRLEEAIKCYKRAILL-G-DTEGSALVRLAKLYEELKDLNEAAQYYEK 491 (559)
T ss_pred HhccHHHHHHHHHHHHhc-c-ccchHHHHHHHHHHHHHHhHHHHHHHHHH
Confidence 666666666666665543 2 22345556666666666666666655543
No 49
>PF13429 TPR_15: Tetratricopeptide repeat; PDB: 2VQ2_A 2PL2_B.
Probab=99.44 E-value=4.3e-13 Score=127.38 Aligned_cols=221 Identities=16% Similarity=0.098 Sum_probs=81.9
Q ss_pred HHHhhcCCChhhHHHHHHHHHhCCCCC-CcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCC
Q 047767 82 ISGCGKFRHPKQALYLYDEMVSHGIKE-SASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160 (666)
Q Consensus 82 l~~~~~~~~~~~a~~~~~~m~~~~~~~-~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 160 (666)
...+.+.|++++|+++++.......+| +..-|..+...+...++.+.|.+.++.+...+. -++..+..++.. ...++
T Consensus 15 A~~~~~~~~~~~Al~~L~~~~~~~~~~~~~~~~~~~a~La~~~~~~~~A~~ay~~l~~~~~-~~~~~~~~l~~l-~~~~~ 92 (280)
T PF13429_consen 15 ARLLYQRGDYEKALEVLKKAAQKIAPPDDPEYWRLLADLAWSLGDYDEAIEAYEKLLASDK-ANPQDYERLIQL-LQDGD 92 (280)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc-cccccccccccc-ccccc
Confidence 455666777777777775443332123 333344444455566777777777777776552 255556666666 57777
Q ss_pred hhHHHHhhccCCC--CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCCCHhhHHHHHHHhcccCChHHHHHHHHHH
Q 047767 161 SVRALDLFDELPE--RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHV 237 (666)
Q Consensus 161 ~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 237 (666)
+++|.++++..-+ ++...+..++..+.+.++++++.++++.+.... .+++...|..+...+.+.|+.++|...+++.
T Consensus 93 ~~~A~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~a 172 (280)
T PF13429_consen 93 PEEALKLAEKAYERDGDPRYLLSALQLYYRLGDYDEAEELLEKLEELPAAPDSARFWLALAEIYEQLGDPDKALRDYRKA 172 (280)
T ss_dssp -------------------------H-HHHTT-HHHHHHHHHHHHH-T---T-HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred ccccccccccccccccccchhhHHHHHHHHHhHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 7777777665533 455566777777888888888888888876542 3456666777777777888888888888888
Q ss_pred HHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 047767 238 IKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRMQL 306 (666)
Q Consensus 238 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (666)
++.. |.|..+.+.++..+...|+.+++.+++.... +.|+..|..+..++...|+.++|+..|++...
T Consensus 173 l~~~--P~~~~~~~~l~~~li~~~~~~~~~~~l~~~~~~~~~~~~~~~~la~~~~~lg~~~~Al~~~~~~~~ 242 (280)
T PF13429_consen 173 LELD--PDDPDARNALAWLLIDMGDYDEAREALKRLLKAAPDDPDLWDALAAAYLQLGRYEEALEYLEKALK 242 (280)
T ss_dssp HHH---TT-HHHHHHHHHHHCTTCHHHHHHHHHHHHHHH-HTSCCHCHHHHHHHHHHT-HHHHHHHHHHHHH
T ss_pred HHcC--CCCHHHHHHHHHHHHHCCChHHHHHHHHHHHHHCcCHHHHHHHHHHHhcccccccccccccccccc
Confidence 8875 6667777777777777777777665554442 34556667777777777777777777777655
No 50
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.44 E-value=4.3e-10 Score=100.95 Aligned_cols=455 Identities=12% Similarity=0.068 Sum_probs=240.3
Q ss_pred HHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCCh
Q 047767 82 ISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161 (666)
Q Consensus 82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 161 (666)
+.-+..++++..|+.+++--...+-.-...+-.-+..++...|++++|..++..+.+.. .++...+..|.-.+.-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55666777888888888776544432222333344555567888888888888777644 45666666666666666777
Q ss_pred hHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhC
Q 047767 162 VRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG 241 (666)
Q Consensus 162 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 241 (666)
.+|..+-...++ +...-..|+....+.++-++-..+-+.+... ...-.++....-..-.+++|..++..++..+
T Consensus 108 ~eA~~~~~ka~k-~pL~~RLlfhlahklndEk~~~~fh~~LqD~-----~EdqLSLAsvhYmR~HYQeAIdvYkrvL~dn 181 (557)
T KOG3785|consen 108 IEAKSIAEKAPK-TPLCIRLLFHLAHKLNDEKRILTFHSSLQDT-----LEDQLSLASVHYMRMHYQEAIDVYKRVLQDN 181 (557)
T ss_pred HHHHHHHhhCCC-ChHHHHHHHHHHHHhCcHHHHHHHHHHHhhh-----HHHHHhHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 777777665543 2222333344444555555555444443321 0111122222222334566666666665543
Q ss_pred CCCchHHHHHHH-HHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHH
Q 047767 242 WVDVNIFVANAL-VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320 (666)
Q Consensus 242 ~~~~~~~~~~~l-~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 320 (666)
|+....|.. .-+|.+. .-++-+.+++.--.+. -|| .|+..=+
T Consensus 182 ---~ey~alNVy~ALCyyKl-------------------------------DYydvsqevl~vYL~q--~pd-StiA~NL 224 (557)
T KOG3785|consen 182 ---PEYIALNVYMALCYYKL-------------------------------DYYDVSQEVLKVYLRQ--FPD-STIAKNL 224 (557)
T ss_pred ---hhhhhhHHHHHHHHHhc-------------------------------chhhhHHHHHHHHHHh--CCC-cHHHHHH
Confidence 222222222 2233333 3333333333333221 122 1222222
Q ss_pred HHHhc--cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh-----cCChHHHHHHhccCCCCCcccHHHHHHHHHhc
Q 047767 321 NFASR--TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK-----CNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393 (666)
Q Consensus 321 ~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 393 (666)
.+|.. .=+-..++.-.+.+.+.+-.. ...+.-.++ ...-+.|++++-.+.+.-+..--.++--|.+.
T Consensus 225 kacn~fRl~ngr~ae~E~k~ladN~~~~------~~f~~~l~rHNLVvFrngEgALqVLP~L~~~IPEARlNL~iYyL~q 298 (557)
T KOG3785|consen 225 KACNLFRLINGRTAEDEKKELADNIDQE------YPFIEYLCRHNLVVFRNGEGALQVLPSLMKHIPEARLNLIIYYLNQ 298 (557)
T ss_pred HHHHHhhhhccchhHHHHHHHHhccccc------chhHHHHHHcCeEEEeCCccHHHhchHHHhhChHhhhhheeeeccc
Confidence 22221 111112222222222221110 111222222 12334455444433332223333445556777
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHH
Q 047767 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQ 473 (666)
Q Consensus 394 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~ 473 (666)
++..+|..+.+++. |... +..++.+.... ++..-......+.-|.+
T Consensus 299 ~dVqeA~~L~Kdl~-----PttP-~EyilKgvv~a----------------------------alGQe~gSreHlKiAqq 344 (557)
T KOG3785|consen 299 NDVQEAISLCKDLD-----PTTP-YEYILKGVVFA----------------------------ALGQETGSREHLKIAQQ 344 (557)
T ss_pred ccHHHHHHHHhhcC-----CCCh-HHHHHHHHHHH----------------------------HhhhhcCcHHHHHHHHH
Confidence 78888877766652 2211 22222221111 11111222233455666
Q ss_pred HhccCCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhh
Q 047767 474 VFEKIPS-----PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548 (666)
Q Consensus 474 ~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 548 (666)
.|.-.-+ .++..-.++..++.-..++++++.+++.+..--..-|...| .+.++.+..|++.+|+++|-.+...
T Consensus 345 ffqlVG~Sa~ecDTIpGRQsmAs~fFL~~qFddVl~YlnSi~sYF~NdD~Fn~-N~AQAk~atgny~eaEelf~~is~~- 422 (557)
T KOG3785|consen 345 FFQLVGESALECDTIPGRQSMASYFFLSFQFDDVLTYLNSIESYFTNDDDFNL-NLAQAKLATGNYVEAEELFIRISGP- 422 (557)
T ss_pred HHHHhcccccccccccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcchhhh-HHHHHHHHhcChHHHHHHHhhhcCh-
Confidence 6654432 33444555666666667888888888888775444444444 3677888889999999999887644
Q ss_pred CCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHH-HHHHHhhCChHHHHHHHHHHHhcCCCCcchH
Q 047767 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSL-LRSCRVHGNEIIGRRVANILMELEPVDFAVY 623 (666)
Q Consensus 549 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l-~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 623 (666)
.++.+..-...|.++|.+.|+++-|.+++-++..+.+.-+...+ ..-|.+.+.+--|-+.|..+-.++|. |.-|
T Consensus 423 ~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE~lDP~-pEnW 497 (557)
T KOG3785|consen 423 EIKNKILYKSMLARCYIRNKKPQLAWDMMLKTNTPSERFSLLQLIANDCYKANEFYYAAKAFDELEILDPT-PENW 497 (557)
T ss_pred hhhhhHHHHHHHHHHHHhcCCchHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHHccCCC-cccc
Confidence 44444444456778999999999999999888855555544444 44588888888888888888888885 4444
No 51
>TIGR00540 hemY_coli hemY protein. This is an uncharacterized protein encoded next to a heme-biosynthetic enzyme in two gamma division proteobacteria (E. coli and H. influenzae). It is known in no other species. The gene symbol hemY is unfortunate in that an unrelated protein, protoporphyrinogen oxidase, is designated as HemG in E. coli but as HemY in Bacillus subtilis.
Probab=99.44 E-value=1.6e-10 Score=115.76 Aligned_cols=280 Identities=11% Similarity=0.027 Sum_probs=174.5
Q ss_pred ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC--CCc--ccHHHHHHHHHhcCChhHHH
Q 047767 325 RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG--RSL--ECCNSLMTSLLHSGNIKDAV 400 (666)
Q Consensus 325 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~--~~~~~li~~~~~~~~~~~a~ 400 (666)
..|+++.|.+.+....+.... +...+.....++...|+.+.|...+....+ ++. ...-.....+...|+++.|.
T Consensus 96 ~~g~~~~A~~~l~~~~~~~~~--~~~~~llaA~aa~~~g~~~~A~~~l~~a~~~~p~~~l~~~~~~a~l~l~~~~~~~Al 173 (409)
T TIGR00540 96 AEGDYAKAEKLIAKNADHAAE--PVLNLIKAAEAAQQRGDEARANQHLEEAAELAGNDNILVEIARTRILLAQNELHAAR 173 (409)
T ss_pred hCCCHHHHHHHHHHHhhcCCC--CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCcCchHHHHHHHHHHHHCCCHHHHH
Confidence 356677777766655443321 233333445555555666666666655322 111 11122344455556666666
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC
Q 047767 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480 (666)
Q Consensus 401 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (666)
..++.+.+. . |.++.+...+...+...|++++|.+.+....+
T Consensus 174 ~~l~~l~~~-------------------------------------~-P~~~~~l~ll~~~~~~~~d~~~a~~~l~~l~k 215 (409)
T TIGR00540 174 HGVDKLLEM-------------------------------------A-PRHKEVLKLAEEAYIRSGAWQALDDIIDNMAK 215 (409)
T ss_pred HHHHHHHHh-------------------------------------C-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 666555554 2 22334455566677778888877777777663
Q ss_pred ---CCHHHHHH----HHHHHHHcCChhHHHHHHHHHHHcCC---CCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCC
Q 047767 481 ---PNVVCFTS----IMNGYSRNGMGREALDMLEVMIQRGL---IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550 (666)
Q Consensus 481 ---~~~~~~~~----li~~~~~~~~~~~a~~~~~~m~~~g~---~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 550 (666)
.+...+.. ...+....+..+++...+..+.+... +.+...+..+...+...|+.++|.+.+++..++
T Consensus 216 ~~~~~~~~~~~l~~~a~~~~l~~~~~~~~~~~L~~~~~~~p~~~~~~~~l~~~~a~~l~~~g~~~~A~~~l~~~l~~--- 292 (409)
T TIGR00540 216 AGLFDDEEFADLEQKAEIGLLDEAMADEGIDGLLNWWKNQPRHRRHNIALKIALAEHLIDCDDHDSAQEIIFDGLKK--- 292 (409)
T ss_pred cCCCCHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHCCHHHhCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhh---
Confidence 23222211 11111223333334445555555321 126678888889999999999999999999975
Q ss_pred CCCchH---HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CH--HHHHHHHHHHHhhCChHHHHHHHH--HHHhcCCCCcc
Q 047767 551 DADRQH---YSCMIDMLGRAGILDKAEELLQQTP-GGG-DC--MMWSSLLRSCRVHGNEIIGRRVAN--ILMELEPVDFA 621 (666)
Q Consensus 551 ~p~~~~---~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~--~~~~~l~~~~~~~~~~~~a~~~~~--~~~~~~p~~~~ 621 (666)
.||... .....-.....++.+++.+.+++.. ..| |. ....++++.+.+.|++++|.+.|+ .+.+..|++ .
T Consensus 293 ~pd~~~~~~~~l~~~~~l~~~~~~~~~~~~e~~lk~~p~~~~~~ll~sLg~l~~~~~~~~~A~~~le~a~a~~~~p~~-~ 371 (409)
T TIGR00540 293 LGDDRAISLPLCLPIPRLKPEDNEKLEKLIEKQAKNVDDKPKCCINRALGQLLMKHGEFIEAADAFKNVAACKEQLDA-N 371 (409)
T ss_pred CCCcccchhHHHHHhhhcCCCChHHHHHHHHHHHHhCCCChhHHHHHHHHHHHHHcccHHHHHHHHHHhHHhhcCCCH-H
Confidence 555431 1111122234578888888887654 445 44 667789999999999999999999 577788854 5
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 622 VYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 622 ~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.+..|+.++.+.|+.++|.++|++...
T Consensus 372 ~~~~La~ll~~~g~~~~A~~~~~~~l~ 398 (409)
T TIGR00540 372 DLAMAADAFDQAGDKAEAAAMRQDSLG 398 (409)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677999999999999999999997643
No 52
>KOG2047 consensus mRNA splicing factor [RNA processing and modification]
Probab=99.43 E-value=6e-08 Score=94.47 Aligned_cols=555 Identities=12% Similarity=0.084 Sum_probs=288.6
Q ss_pred hhhhHHHHhHhcCCChhhHHHHhhcCC-----CCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHH
Q 047767 45 YSSNRTIDDFVKSGHLNSAKKLFDEMP-----ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119 (666)
Q Consensus 45 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 119 (666)
..|-..+..+.++|++....+.|++.. ......|...+.-....+-++-+..+|++.+.. ++..-+.-+..
T Consensus 103 RIwl~Ylq~l~~Q~~iT~tR~tfdrALraLpvtqH~rIW~lyl~Fv~~~~lPets~rvyrRYLk~----~P~~~eeyie~ 178 (835)
T KOG2047|consen 103 RIWLDYLQFLIKQGLITRTRRTFDRALRALPVTQHDRIWDLYLKFVESHGLPETSIRVYRRYLKV----APEAREEYIEY 178 (835)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHHHHhCchHhhccchHHHHHHHHhCCChHHHHHHHHHHHhc----CHHHHHHHHHH
Confidence 455566777778888888888888754 235667888888888888899999999988763 44456777888
Q ss_pred HHcCCChHHHHHHHHHHHHhc------CCCchhhhhHHHHHhHhcCC---hhHHHHhhccCCC--CC--cccHHHHHHHH
Q 047767 120 CSNAGFYTEGIQIHCRVLSLG------FGLNLYIGSPLVDLYMRMGP---SVRALDLFDELPE--RN--LATWNLMLRAF 186 (666)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~~------~~~~~~~~~~ll~~~~~~g~---~~~a~~~~~~~~~--~~--~~~~~~li~~~ 186 (666)
++..+++++|.+.+...+... .+.+...|.-+....++.-+ --....++..+.. +| ...|++|.+-|
T Consensus 179 L~~~d~~~eaa~~la~vln~d~f~sk~gkSn~qlw~elcdlis~~p~~~~slnvdaiiR~gi~rftDq~g~Lw~SLAdYY 258 (835)
T KOG2047|consen 179 LAKSDRLDEAAQRLATVLNQDEFVSKKGKSNHQLWLELCDLISQNPDKVQSLNVDAIIRGGIRRFTDQLGFLWCSLADYY 258 (835)
T ss_pred HHhccchHHHHHHHHHhcCchhhhhhcccchhhHHHHHHHHHHhCcchhcccCHHHHHHhhcccCcHHHHHHHHHHHHHH
Confidence 889999999998888775321 23455566666665554422 2233344444433 23 34688889999
Q ss_pred HhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHH
Q 047767 187 CELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEA 266 (666)
Q Consensus 187 ~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 266 (666)
.+.|.+++|.++|++.... ..+..-|..+..+|+.-....-+..+- ...+.+.-+.+.. +++-.
T Consensus 259 Ir~g~~ekarDvyeeai~~--v~tvrDFt~ifd~Ya~FEE~~~~~~me-~a~~~~~n~ed~~-------------dl~~~ 322 (835)
T KOG2047|consen 259 IRSGLFEKARDVYEEAIQT--VMTVRDFTQIFDAYAQFEESCVAAKME-LADEESGNEEDDV-------------DLELH 322 (835)
T ss_pred HHhhhhHHHHHHHHHHHHh--heehhhHHHHHHHHHHHHHHHHHHHHh-hhhhcccChhhhh-------------hHHHH
Confidence 9999999999999887764 234455666666654322211111111 0000110011110 11111
Q ss_pred HHHhccCC---------------CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCCh------hhHHHHHHHHhc
Q 047767 267 KKSFDFIP---------------VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI------RSFVEFLNFASR 325 (666)
Q Consensus 267 ~~~~~~~~---------------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~------~t~~~ll~~~~~ 325 (666)
..-|+.+. ..++..|..-+. +..|+..+....+.+.... +.|-. ..+..+...|..
T Consensus 323 ~a~~e~lm~rr~~~lNsVlLRQn~~nV~eW~kRV~--l~e~~~~~~i~tyteAv~~-vdP~ka~Gs~~~Lw~~faklYe~ 399 (835)
T KOG2047|consen 323 MARFESLMNRRPLLLNSVLLRQNPHNVEEWHKRVK--LYEGNAAEQINTYTEAVKT-VDPKKAVGSPGTLWVEFAKLYEN 399 (835)
T ss_pred HHHHHHHHhccchHHHHHHHhcCCccHHHHHhhhh--hhcCChHHHHHHHHHHHHc-cCcccCCCChhhHHHHHHHHHHh
Confidence 22222221 123344443333 2345566666666665442 22211 123344444455
Q ss_pred cCChhhHHHHHHHHHHhCCCCC--chhHHhHHHHHHHhcCChHHHHHHhccCCC-CCcccHHHHHHHHHhcCChhHHHHH
Q 047767 326 TGNVYFGKQIHGYVTKLGFDHG--SVHVQSALTDMYGKCNVIESSVAVFESAPG-RSLECCNSLMTSLLHSGNIKDAVEM 402 (666)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~ 402 (666)
.|+++.|+.+|+...+..+... =..+|-.-+.+-.+..+++.|.++.+.... |.... ..+...+..-++ .
T Consensus 400 ~~~l~~aRvifeka~~V~y~~v~dLa~vw~~waemElrh~~~~~Al~lm~~A~~vP~~~~-----~~~yd~~~pvQ~-r- 472 (835)
T KOG2047|consen 400 NGDLDDARVIFEKATKVPYKTVEDLAEVWCAWAEMELRHENFEAALKLMRRATHVPTNPE-----LEYYDNSEPVQA-R- 472 (835)
T ss_pred cCcHHHHHHHHHHhhcCCccchHHHHHHHHHHHHHHHhhhhHHHHHHHHHhhhcCCCchh-----hhhhcCCCcHHH-H-
Confidence 5555555555555554433320 012333333333444444444444443211 00000 000001100000 0
Q ss_pred HHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--
Q 047767 403 FGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-- 480 (666)
Q Consensus 403 ~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-- 480 (666)
+.-+...|...+.- ....|-++....+++.+.+..+.....+.| ....+-...-++++.+++++-..
T Consensus 473 --------lhrSlkiWs~y~Dl--eEs~gtfestk~vYdriidLriaTPqii~N-yAmfLEeh~yfeesFk~YErgI~LF 541 (835)
T KOG2047|consen 473 --------LHRSLKIWSMYADL--EESLGTFESTKAVYDRIIDLRIATPQIIIN-YAMFLEEHKYFEESFKAYERGISLF 541 (835)
T ss_pred --------HHHhHHHHHHHHHH--HHHhccHHHHHHHHHHHHHHhcCCHHHHHH-HHHHHHhhHHHHHHHHHHHcCCccC
Confidence 00011112222222 334456666666777776665543333332 22223444557888888887663
Q ss_pred --CCH-HHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH--hcCCCcHHHHHHHHHHhHHhhCCCC
Q 047767 481 --PNV-VCFTSIMNGYSR---NGMGREALDMLEVMIQRGLIPDKVTFLCVLAG--CNHSGMVKEGQLVFNSMKSVYGIDA 552 (666)
Q Consensus 481 --~~~-~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~~~~~~~~~~p 552 (666)
|++ ..|+..+.-+.+ ....+.|..+|++..+ |.+|...-+..|+.+ --+.|-...|.++++++.. ++++
T Consensus 542 k~p~v~diW~tYLtkfi~rygg~klEraRdLFEqaL~-~Cpp~~aKtiyLlYA~lEEe~GLar~amsiyerat~--~v~~ 618 (835)
T KOG2047|consen 542 KWPNVYDIWNTYLTKFIKRYGGTKLERARDLFEQALD-GCPPEHAKTIYLLYAKLEEEHGLARHAMSIYERATS--AVKE 618 (835)
T ss_pred CCccHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHh-cCCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh--cCCH
Confidence 554 467766655544 2367888888888888 667665533333322 2345777788888888765 3444
Q ss_pred C--chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHH---HHHHHHhhCChHHHHHHHHHHHhcCCC--CcchHH
Q 047767 553 D--RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSS---LLRSCRVHGNEIIGRRVANILMELEPV--DFAVYS 624 (666)
Q Consensus 553 ~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~---l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~ 624 (666)
. ...|+..|.--...=-+..-.+++++.. .-|+...-.. ....-.+.|..+.|..+|.-..+..|+ ++..|.
T Consensus 619 a~~l~myni~I~kaae~yGv~~TR~iYekaIe~Lp~~~~r~mclrFAdlEtklGEidRARaIya~~sq~~dPr~~~~fW~ 698 (835)
T KOG2047|consen 619 AQRLDMYNIYIKKAAEIYGVPRTREIYEKAIESLPDSKAREMCLRFADLETKLGEIDRARAIYAHGSQICDPRVTTEFWD 698 (835)
T ss_pred HHHHHHHHHHHHHHHHHhCCcccHHHHHHHHHhCChHHHHHHHHHHHHHhhhhhhHHHHHHHHHhhhhcCCCcCChHHHH
Confidence 4 4556665543322222222333333322 2343322221 222234667777787777777775543 344566
Q ss_pred HHHHHHhhcCCchHHHHHH
Q 047767 625 QVSNFYSEIGEFEVSMQIR 643 (666)
Q Consensus 625 ~l~~~~~~~g~~~~A~~~~ 643 (666)
..=..-.+.|+-+.-.+.+
T Consensus 699 twk~FEvrHGnedT~keML 717 (835)
T KOG2047|consen 699 TWKEFEVRHGNEDTYKEML 717 (835)
T ss_pred HHHHHHHhcCCHHHHHHHH
Confidence 6666666777744444433
No 53
>KOG1126 consensus DNA-binding cell division cycle control protein [Cell cycle control, cell division, chromosome partitioning]
Probab=99.42 E-value=1.5e-11 Score=119.77 Aligned_cols=247 Identities=11% Similarity=0.068 Sum_probs=190.8
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH-HHHHHhchhhhhcccchhhHHHHHHHHHHhCC--CCchHHHHHHHHHHHhhCCHH-
Q 047767 394 GNIKDAVEMFGFMVDEGIGLDEV-TLSTTLKALSVSASANLGSCRLLHCCAIKSGF--ESNIAVSCSLMDAYSRCGHIE- 469 (666)
Q Consensus 394 ~~~~~a~~~~~~m~~~~~~p~~~-~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~- 469 (666)
-+..+|+..|...... .++.. ...-+-.+ +-...+++++..+|+.+.+... -.+..+|.+.+--+-+.-.+.
T Consensus 333 y~~~~A~~~~~klp~h--~~nt~wvl~q~Gra--yFEl~~Y~~a~~~F~~~r~~~p~rv~~meiyST~LWHLq~~v~Ls~ 408 (638)
T KOG1126|consen 333 YNCREALNLFEKLPSH--HYNTGWVLSQLGRA--YFELIEYDQAERIFSLVRRIEPYRVKGMEIYSTTLWHLQDEVALSY 408 (638)
T ss_pred HHHHHHHHHHHhhHHh--cCCchHHHHHHHHH--HHHHHHHHHHHHHHHHHHhhccccccchhHHHHHHHHHHhhHHHHH
Confidence 3567888888885443 34444 23333334 7888899999999998876432 245666666554333221111
Q ss_pred HHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhh
Q 047767 470 LSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548 (666)
Q Consensus 470 ~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 548 (666)
.|..+.+ +-+..+.+|.++.++|.-+++.+.|++.|++.++ +.| ...+|+.+..-+.....+|.|...|+...
T Consensus 409 Laq~Li~-~~~~sPesWca~GNcfSLQkdh~~Aik~f~RAiQ--ldp~faYayTLlGhE~~~~ee~d~a~~~fr~Al--- 482 (638)
T KOG1126|consen 409 LAQDLID-TDPNSPESWCALGNCFSLQKDHDTAIKCFKRAIQ--LDPRFAYAYTLLGHESIATEEFDKAMKSFRKAL--- 482 (638)
T ss_pred HHHHHHh-hCCCCcHHHHHhcchhhhhhHHHHHHHHHHHhhc--cCCccchhhhhcCChhhhhHHHHhHHHHHHhhh---
Confidence 1222222 2235678999999999999999999999999998 778 45688888888888899999999999876
Q ss_pred CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 549 GIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 549 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
++.|+ -..|.-|.-.|.++++++.|.-.|+++. .+| +......++..+.+.|+.|+|+.+++++.-++|.|+-.-+.
T Consensus 483 ~~~~rhYnAwYGlG~vy~Kqek~e~Ae~~fqkA~~INP~nsvi~~~~g~~~~~~k~~d~AL~~~~~A~~ld~kn~l~~~~ 562 (638)
T KOG1126|consen 483 GVDPRHYNAWYGLGTVYLKQEKLEFAEFHFQKAVEINPSNSVILCHIGRIQHQLKRKDKALQLYEKAIHLDPKNPLCKYH 562 (638)
T ss_pred cCCchhhHHHHhhhhheeccchhhHHHHHHHhhhcCCccchhHHhhhhHHHHHhhhhhHHHHHHHHHHhcCCCCchhHHH
Confidence 44444 3445557788999999999999999865 677 77788888899999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 626 VSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 626 l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
-+.++...+++++|++.++++++.-
T Consensus 563 ~~~il~~~~~~~eal~~LEeLk~~v 587 (638)
T KOG1126|consen 563 RASILFSLGRYVEALQELEELKELV 587 (638)
T ss_pred HHHHHHhhcchHHHHHHHHHHHHhC
Confidence 9999999999999999999998743
No 54
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.41 E-value=1.4e-09 Score=99.89 Aligned_cols=286 Identities=13% Similarity=0.054 Sum_probs=199.6
Q ss_pred CCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHH
Q 047767 291 YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVA 370 (666)
Q Consensus 291 ~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 370 (666)
.|++..|++++.+-.+.+-.| ...|.....+.-..|+.+.+-..+.++.+..-++ ...+.-+..+.....|+.+.|..
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~AA~qrgd~~~an~yL~eaae~~~~~-~l~v~ltrarlll~~~d~~aA~~ 174 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEAAQQRGDEDRANRYLAEAAELAGDD-TLAVELTRARLLLNRRDYPAARE 174 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHHHHhcccHHHHHHHHHHHhccCCCc-hHHHHHHHHHHHHhCCCchhHHH
Confidence 466666666666655444333 2234444555555666666666666665553333 56666677777777777777776
Q ss_pred HhccC---CCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhC
Q 047767 371 VFESA---PGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG 447 (666)
Q Consensus 371 ~~~~~---~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~ 447 (666)
-.+++ ..+++.......++|.+.|++.....++..|.+.|+--|+..-.
T Consensus 175 ~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~---------------------------- 226 (400)
T COG3071 175 NVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAAR---------------------------- 226 (400)
T ss_pred HHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHH----------------------------
Confidence 66544 33466677888899999999999999999999887544432211
Q ss_pred CCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047767 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524 (666)
Q Consensus 448 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 524 (666)
....+++.+++-....+..+.-...|+..+. .++..-.+++.-+.+.|+.++|.++..+..+++..|.- ..
T Consensus 227 --le~~a~~glL~q~~~~~~~~gL~~~W~~~pr~lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L----~~ 300 (400)
T COG3071 227 --LEQQAWEGLLQQARDDNGSEGLKTWWKNQPRKLRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRL----CR 300 (400)
T ss_pred --HHHHHHHHHHHHHhccccchHHHHHHHhccHHhhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhH----HH
Confidence 1123455555555555666666667777763 56777778888889999999999999998888777762 22
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChH
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSSLLRSCRVHGNEI 603 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~ 603 (666)
.-.+.+-++...-++..+.....++.. +..+.+|...|.+.+.|.+|.+.|+... ..|+..+|.-+..++.+.|+..
T Consensus 301 ~~~~l~~~d~~~l~k~~e~~l~~h~~~--p~L~~tLG~L~~k~~~w~kA~~~leaAl~~~~s~~~~~~la~~~~~~g~~~ 378 (400)
T COG3071 301 LIPRLRPGDPEPLIKAAEKWLKQHPED--PLLLSTLGRLALKNKLWGKASEALEAALKLRPSASDYAELADALDQLGEPE 378 (400)
T ss_pred HHhhcCCCCchHHHHHHHHHHHhCCCC--hhHHHHHHHHHHHhhHHHHHHHHHHHHHhcCCChhhHHHHHHHHHHcCChH
Confidence 335677788888788887777653333 4778888888888888888888888543 6778888888888888888888
Q ss_pred HHHHHHHHHHh
Q 047767 604 IGRRVANILME 614 (666)
Q Consensus 604 ~a~~~~~~~~~ 614 (666)
+|.+..++.+-
T Consensus 379 ~A~~~r~e~L~ 389 (400)
T COG3071 379 EAEQVRREALL 389 (400)
T ss_pred HHHHHHHHHHH
Confidence 88888888765
No 55
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=4.5e-09 Score=96.56 Aligned_cols=307 Identities=8% Similarity=-0.050 Sum_probs=217.2
Q ss_pred CCCChhhHHHHHHHH--hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHH--
Q 047767 309 KRPSIRSFVEFLNFA--SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN-- 384 (666)
Q Consensus 309 ~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-- 384 (666)
+.|...+....+.++ +..++-..+...+-.+.....-+.+.+....+.+++...|+.++|...|++...-|+.+..
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 344444555555544 3456666666666666666656669999999999999999999999999987665554322
Q ss_pred -HHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 047767 385 -SLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463 (666)
Q Consensus 385 -~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (666)
.....+.+.|+.++.-.+...+....-..-...|.. ... .-...+.+.|..+.+..++.. +.+...+-.-..++.
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~~ta~~wfV~-~~~--l~~~K~~~rAL~~~eK~I~~~-~r~~~alilKG~lL~ 345 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVKYTASHWFVH-AQL--LYDEKKFERALNFVEKCIDSE-PRNHEALILKGRLLI 345 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhhcchhhhhhh-hhh--hhhhhhHHHHHHHHHHHhccC-cccchHHHhccHHHH
Confidence 223345677888888777777754321111111111 111 334556666666665555433 223333333345667
Q ss_pred hhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHhcCC-CcHHHHH
Q 047767 464 RCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL-AGCNHS-GMVKEGQ 538 (666)
Q Consensus 464 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~-g~~~~a~ 538 (666)
..++.++|.-.|+.... -+..+|..|+.+|...|++.+|..+-+..... +.-+..+...+. ..|.-. .--++|.
T Consensus 346 ~~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~LtL~g~~V~~~dp~~rEKAK 424 (564)
T KOG1174|consen 346 ALERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLTLFGTLVLFPDPRMREKAK 424 (564)
T ss_pred hccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhhhhcceeeccCchhHHHHH
Confidence 78999999988987663 47899999999999999999999887776653 334445555552 344332 3347899
Q ss_pred HHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 539 LVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 539 ~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
+++++.. .++|+ ....+.+.+.+.+.|+.++++.++++.. ..||....+.|...++..+.+.+|.+.|..++.++
T Consensus 425 kf~ek~L---~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~~~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~ALr~d 501 (564)
T KOG1174|consen 425 KFAEKSL---KINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLIIFPDVNLHNHLGDIMRAQNEPQKAMEYYYKALRQD 501 (564)
T ss_pred HHHHhhh---ccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHhhccccHHHHHHHHHHHHhhhHHHHHHHHHHHHhcC
Confidence 9999887 56888 7888899999999999999999999755 77899999999999999999999999999999999
Q ss_pred CCCcchH
Q 047767 617 PVDFAVY 623 (666)
Q Consensus 617 p~~~~~~ 623 (666)
|++..+.
T Consensus 502 P~~~~sl 508 (564)
T KOG1174|consen 502 PKSKRTL 508 (564)
T ss_pred ccchHHH
Confidence 9875443
No 56
>KOG0547 consensus Translocase of outer mitochondrial membrane complex, subunit TOM70/TOM72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.39 E-value=2.6e-09 Score=100.38 Aligned_cols=85 Identities=12% Similarity=0.033 Sum_probs=65.4
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHhCCCCCC-cccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCc-hhhhhHHHHHh
Q 047767 78 YNLLISGCGKFRHPKQALYLYDEMVSHGIKES-ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLN-LYIGSPLVDLY 155 (666)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~-~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~ll~~~ 155 (666)
+-..-+-|.++|++++|+++|.+.++. .|+ +.-|.....+|...|+|+++.+.-...++.+ |+ +-.+..-..++
T Consensus 118 lK~~GN~~f~~kkY~eAIkyY~~AI~l--~p~epiFYsNraAcY~~lgd~~~Vied~TkALEl~--P~Y~KAl~RRA~A~ 193 (606)
T KOG0547|consen 118 LKTKGNKFFRNKKYDEAIKYYTQAIEL--CPDEPIFYSNRAACYESLGDWEKVIEDCTKALELN--PDYVKALLRRASAH 193 (606)
T ss_pred HHhhhhhhhhcccHHHHHHHHHHHHhc--CCCCchhhhhHHHHHHHHhhHHHHHHHHHHHhhcC--cHHHHHHHHHHHHH
Confidence 444556678899999999999999985 577 7778888889999999999998877777653 33 34555566677
Q ss_pred HhcCChhHHHH
Q 047767 156 MRMGPSVRALD 166 (666)
Q Consensus 156 ~~~g~~~~a~~ 166 (666)
-..|++++|+.
T Consensus 194 E~lg~~~eal~ 204 (606)
T KOG0547|consen 194 EQLGKFDEALF 204 (606)
T ss_pred HhhccHHHHHH
Confidence 77788887763
No 57
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.38 E-value=8.6e-11 Score=109.16 Aligned_cols=197 Identities=11% Similarity=0.009 Sum_probs=164.9
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047767 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 527 (666)
....+..+...+...|++++|.+.+++..+ .+...+..+...+...|++++|.+.+++..+.. +.+...+..+...
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~ 108 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEHDPDDYLAYLALALYYQQLGELEKAEDSFRRALTLN-PNNGDVLNNYGTF 108 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHH
Confidence 355666778889999999999999987763 356778888999999999999999999998853 3344577778888
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIG 605 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 605 (666)
+...|++++|.+.++++............+..+..++...|++++|...+++.. ..| +...+..+...+...|++++|
T Consensus 109 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A 188 (234)
T TIGR02521 109 LCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQYKDA 188 (234)
T ss_pred HHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCHHHH
Confidence 999999999999999998651222235677888999999999999999998765 334 566788888999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
...++++.+..|.++..+..++.++...|+.++|..+.+.+..
T Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~ 231 (234)
T TIGR02521 189 RAYLERYQQTYNQTAESLWLGIRIARALGDVAAAQRYGAQLQK 231 (234)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 9999999999888888999999999999999999999887754
No 58
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.38 E-value=2.8e-08 Score=95.85 Aligned_cols=441 Identities=13% Similarity=0.078 Sum_probs=240.0
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChH
Q 047767 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264 (666)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 264 (666)
.+...|++++|......+...+ +-|...+..-+-++...+.+++|..+.+.-... ..+...+..-+-+..+.+..+
T Consensus 21 ~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~~---~~~~~~~fEKAYc~Yrlnk~D 96 (652)
T KOG2376|consen 21 RHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGAL---LVINSFFFEKAYCEYRLNKLD 96 (652)
T ss_pred HhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcchh---hhcchhhHHHHHHHHHcccHH
Confidence 3444566666666666655543 223334444444455556666655433321110 111111111222334667777
Q ss_pred HHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhH-HHHHHHHhccCChhhHHHHHHHHHHhC
Q 047767 265 EAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF-VEFLNFASRTGNVYFGKQIHGYVTKLG 343 (666)
Q Consensus 265 ~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~-~~ll~~~~~~~~~~~a~~~~~~~~~~~ 343 (666)
+|...++...+.|..+...-.+.+-+.|++++|+++|+.+.+.+..--..-. ..++.+-... . ...+....
T Consensus 97 ealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a~l-------~-~~~~q~v~ 168 (652)
T KOG2376|consen 97 EALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAAAL-------Q-VQLLQSVP 168 (652)
T ss_pred HHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHHhh-------h-HHHHHhcc
Confidence 7777777555445445555566677778888888888877665443221111 1111111000 0 00111111
Q ss_pred CCCC-chhHHhHHHHHHHhcCChHHHHHHhccC--------CCCCcc----------cHHHHHHHHHhcCChhHHHHHHH
Q 047767 344 FDHG-SVHVQSALTDMYGKCNVIESSVAVFESA--------PGRSLE----------CCNSLMTSLLHSGNIKDAVEMFG 404 (666)
Q Consensus 344 ~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~--------~~~~~~----------~~~~li~~~~~~~~~~~a~~~~~ 404 (666)
..+. +...+......+...|++.+|++++... ...|.. .--.+..++-..|+.++|..++.
T Consensus 169 ~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~~iy~ 248 (652)
T KOG2376|consen 169 EVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEASSIYV 248 (652)
T ss_pred CCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHHHHHH
Confidence 1111 3334444555666778888887777655 111111 11234456677899999999999
Q ss_pred HHHHcCCCCCHHHHHHHhchh-hhhcccchhh--HHHHHHH-----------HHHhCCCCchHHHHHHHHHHHhhCCHHH
Q 047767 405 FMVDEGIGLDEVTLSTTLKAL-SVSASANLGS--CRLLHCC-----------AIKSGFESNIAVSCSLMDAYSRCGHIEL 470 (666)
Q Consensus 405 ~m~~~~~~p~~~~~~~ll~~~-~~~~~~~~~~--a~~~~~~-----------~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 470 (666)
..+... .+|.........-+ +.....++-. .+..++. +....-...+..-+.++.+|. +..+.
T Consensus 249 ~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~t--nk~~q 325 (652)
T KOG2376|consen 249 DIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFT--NKMDQ 325 (652)
T ss_pred HHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHh--hhHHH
Confidence 998875 34443222221111 0222222211 1111111 111111112222334444444 45566
Q ss_pred HHHHhccCCCCC-HHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCCCcHHHHHHHHH---
Q 047767 471 SHQVFEKIPSPN-VVCFTSIMNGYS--RNGMGREALDMLEVMIQRGLIPDK--VTFLCVLAGCNHSGMVKEGQLVFN--- 542 (666)
Q Consensus 471 A~~~~~~~~~~~-~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~--- 542 (666)
+.++-...+... ...+.+++.... +...+..+.+++...-+. .|+. ......++.....|+++.|.+++.
T Consensus 326 ~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~s~~v~L~~aQl~is~gn~~~A~~il~~~~ 403 (652)
T KOG2376|consen 326 VRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEKSKVVLLLRAQLKISQGNPEVALEILSLFL 403 (652)
T ss_pred HHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCchhHHHHHHHHHHHHhcCCHHHHHHHHHHHh
Confidence 777766666422 334444444332 233577788888877663 4544 355566677889999999999999
Q ss_pred -----HhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCH-HHHHHHHHHHHhhCChHHHHHH
Q 047767 543 -----SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--------GGGDC-MMWSSLLRSCRVHGNEIIGRRV 608 (666)
Q Consensus 543 -----~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~-~~~~~l~~~~~~~~~~~~a~~~ 608 (666)
.+.+. .-.+.+..+++..|.+.++.+.|..++.+.. ..+.. .++..+...-.+.|+-++|..+
T Consensus 404 ~~~~ss~~~~---~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~ 480 (652)
T KOG2376|consen 404 ESWKSSILEA---KHLPGTVGAIVALYYKIKDNDSASAVLDSAIKWWRKQQTGSIALLSLMREAAEFKLRHGNEEEASSL 480 (652)
T ss_pred hhhhhhhhhh---ccChhHHHHHHHHHHhccCCccHHHHHHHHHHHHHHhcccchHHHhHHHHHhHHHHhcCchHHHHHH
Confidence 44432 3336677778888888887776666665432 22221 2333333334567999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 609 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
++++++.+|++..+...|+.+|+.. +.++|..+-+.+
T Consensus 481 leel~k~n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L 517 (652)
T KOG2376|consen 481 LEELVKFNPNDTDLLVQLVTAYARL-DPEKAESLSKKL 517 (652)
T ss_pred HHHHHHhCCchHHHHHHHHHHHHhc-CHHHHHHHhhcC
Confidence 9999999999999999999999887 567887765543
No 59
>KOG1173 consensus Anaphase-promoting complex (APC), Cdc16 subunit [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=2.8e-09 Score=102.06 Aligned_cols=280 Identities=9% Similarity=-0.014 Sum_probs=174.4
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 047767 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356 (666)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 356 (666)
++.....-..-+...+++.+..++.+...+. .++....+..=|.++...|+..+-..+-..+++. .|..+..|.++.
T Consensus 243 ~~dll~~~ad~~y~~c~f~~c~kit~~lle~-dpfh~~~~~~~ia~l~el~~~n~Lf~lsh~LV~~--yP~~a~sW~aVg 319 (611)
T KOG1173|consen 243 NLDLLAEKADRLYYGCRFKECLKITEELLEK-DPFHLPCLPLHIACLYELGKSNKLFLLSHKLVDL--YPSKALSWFAVG 319 (611)
T ss_pred cHHHHHHHHHHHHHcChHHHHHHHhHHHHhh-CCCCcchHHHHHHHHHHhcccchHHHHHHHHHHh--CCCCCcchhhHH
Confidence 3333444445555666777777777666543 2333334444444555556554444444444432 222555566666
Q ss_pred HHHHhcCChHHHHHHhccCCCCCc---ccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccch
Q 047767 357 DMYGKCNVIESSVAVFESAPGRSL---ECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANL 433 (666)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~ 433 (666)
--|.-.|+..+|.+.|.+...-|. ..|-....+|+-.|..|+|+..+...-+
T Consensus 320 ~YYl~i~k~seARry~SKat~lD~~fgpaWl~fghsfa~e~EhdQAmaaY~tAar------------------------- 374 (611)
T KOG1173|consen 320 CYYLMIGKYSEARRYFSKATTLDPTFGPAWLAFGHSFAGEGEHDQAMAAYFTAAR------------------------- 374 (611)
T ss_pred HHHHHhcCcHHHHHHHHHHhhcCccccHHHHHHhHHhhhcchHHHHHHHHHHHHH-------------------------
Confidence 666666666666666655443322 2455555566666666665555443322
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 047767 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513 (666)
Q Consensus 434 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 513 (666)
++.....|.. | +.--|.+.++...|.++|.+...
T Consensus 375 ----------------------------------------l~~G~hlP~L--Y--lgmey~~t~n~kLAe~Ff~~A~a-- 408 (611)
T KOG1173|consen 375 ----------------------------------------LMPGCHLPSL--Y--LGMEYMRTNNLKLAEKFFKQALA-- 408 (611)
T ss_pred ----------------------------------------hccCCcchHH--H--HHHHHHHhccHHHHHHHHHHHHh--
Confidence 1111111211 1 22235566777788888877766
Q ss_pred CCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhh-CC---C-CCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCC
Q 047767 514 LIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVY-GI---D-ADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGD 585 (666)
Q Consensus 514 ~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~---~-p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~ 585 (666)
+-|+. ...+-+.-.....+.+.+|..+|+...... .+ . ....+++.|+.+|.+.+++++|+..++... .+.+
T Consensus 409 i~P~Dplv~~Elgvvay~~~~y~~A~~~f~~~l~~ik~~~~e~~~w~p~~~NLGH~~Rkl~~~~eAI~~~q~aL~l~~k~ 488 (611)
T KOG1173|consen 409 IAPSDPLVLHELGVVAYTYEEYPEALKYFQKALEVIKSVLNEKIFWEPTLNNLGHAYRKLNKYEEAIDYYQKALLLSPKD 488 (611)
T ss_pred cCCCcchhhhhhhheeehHhhhHHHHHHHHHHHHHhhhccccccchhHHHHhHHHHHHHHhhHHHHHHHHHHHHHcCCCc
Confidence 66644 466666666666778888888888776320 01 1 124568899999999999999999999765 3448
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 047767 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630 (666)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 630 (666)
..++.+++..|...|+++.|++.|.+++.+.|++..+-..|..+.
T Consensus 489 ~~~~asig~iy~llgnld~Aid~fhKaL~l~p~n~~~~~lL~~ai 533 (611)
T KOG1173|consen 489 ASTHASIGYIYHLLGNLDKAIDHFHKALALKPDNIFISELLKLAI 533 (611)
T ss_pred hhHHHHHHHHHHHhcChHHHHHHHHHHHhcCCccHHHHHHHHHHH
Confidence 899999999999999999999999999999999866666665444
No 60
>COG3071 HemY Uncharacterized enzyme of heme biosynthesis [Coenzyme metabolism]
Probab=99.33 E-value=1.3e-09 Score=100.03 Aligned_cols=249 Identities=15% Similarity=0.162 Sum_probs=154.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHH
Q 047767 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472 (666)
Q Consensus 393 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (666)
.|++.+|..+..+-.+.+-.| ...|.....+ ....|+.+.+-.++..+.+..-.++....-+........|+++.|.
T Consensus 97 eG~~~qAEkl~~rnae~~e~p-~l~~l~aA~A--A~qrgd~~~an~yL~eaae~~~~~~l~v~ltrarlll~~~d~~aA~ 173 (400)
T COG3071 97 EGDFQQAEKLLRRNAEHGEQP-VLAYLLAAEA--AQQRGDEDRANRYLAEAAELAGDDTLAVELTRARLLLNRRDYPAAR 173 (400)
T ss_pred cCcHHHHHHHHHHhhhcCcch-HHHHHHHHHH--HHhcccHHHHHHHHHHHhccCCCchHHHHHHHHHHHHhCCCchhHH
Confidence 566777777766665554333 2223333333 5666777777777766666555566666666667777778777777
Q ss_pred HHhccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-------HHHHHHHHHhcCCCcHHHHHHHHH
Q 047767 473 QVFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-------VTFLCVLAGCNHSGMVKEGQLVFN 542 (666)
Q Consensus 473 ~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-------~~~~~l~~~~~~~g~~~~a~~~~~ 542 (666)
.-.+++. ..++.......++|.+.|++.....++..|.+.|.--|. .+|..+++-+...+..+.-...|+
T Consensus 174 ~~v~~ll~~~pr~~~vlrLa~r~y~~~g~~~~ll~~l~~L~ka~~l~~~e~~~le~~a~~glL~q~~~~~~~~gL~~~W~ 253 (400)
T COG3071 174 ENVDQLLEMTPRHPEVLRLALRAYIRLGAWQALLAILPKLRKAGLLSDEEAARLEQQAWEGLLQQARDDNGSEGLKTWWK 253 (400)
T ss_pred HHHHHHHHhCcCChHHHHHHHHHHHHhccHHHHHHHHHHHHHccCCChHHHHHHHHHHHHHHHHHHhccccchHHHHHHH
Confidence 7666554 356677777788888888888888888888887765543 246667776666666666666776
Q ss_pred HhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCC--------------------------------C-CHHHH
Q 047767 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG--------------------------------G-DCMMW 589 (666)
Q Consensus 543 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--------------------------------~-~~~~~ 589 (666)
..-++ .+-++..-.+++.-+.+.|+.++|.+++++...+ | ++..+
T Consensus 254 ~~pr~--lr~~p~l~~~~a~~li~l~~~~~A~~~i~~~Lk~~~D~~L~~~~~~l~~~d~~~l~k~~e~~l~~h~~~p~L~ 331 (400)
T COG3071 254 NQPRK--LRNDPELVVAYAERLIRLGDHDEAQEIIEDALKRQWDPRLCRLIPRLRPGDPEPLIKAAEKWLKQHPEDPLLL 331 (400)
T ss_pred hccHH--hhcChhHHHHHHHHHHHcCChHHHHHHHHHHHHhccChhHHHHHhhcCCCCchHHHHHHHHHHHhCCCChhHH
Confidence 66553 4555666777777777888888887776644311 1 23444
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
.+|++.|.+++.+.+|.+.++.+++..|. ...|..++.++.+.|+..+|.+++++..
T Consensus 332 ~tLG~L~~k~~~w~kA~~~leaAl~~~~s-~~~~~~la~~~~~~g~~~~A~~~r~e~L 388 (400)
T COG3071 332 STLGRLALKNKLWGKASEALEAALKLRPS-ASDYAELADALDQLGEPEEAEQVRREAL 388 (400)
T ss_pred HHHHHHHHHhhHHHHHHHHHHHHHhcCCC-hhhHHHHHHHHHHcCChHHHHHHHHHHH
Confidence 45555555555555555555555555552 3455555555555555555555554443
No 61
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=99.33 E-value=5.2e-08 Score=97.12 Aligned_cols=127 Identities=15% Similarity=0.150 Sum_probs=104.3
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCR 597 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 597 (666)
|......+.+.++.++|...+.+... +.|- ...|......+...|.+++|.+.|.... ..| ++.+..++...+.
T Consensus 653 wllaa~~~~~~~~~~~a~~CL~Ea~~---~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al~ldP~hv~s~~Ala~~ll 729 (799)
T KOG4162|consen 653 WLLAADLFLLSGNDDEARSCLLEASK---IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVALALDPDHVPSMTALAELLL 729 (799)
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHh---cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 45555667788888888877777764 3444 6677777788889999999999887654 556 6778888888899
Q ss_pred hhCChHHHHH--HHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 598 VHGNEIIGRR--VANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 598 ~~~~~~~a~~--~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
..|+...|.. ++..+++.+|.++.+|+.||.++.+.|+.++|.+.|....+..
T Consensus 730 e~G~~~la~~~~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe 784 (799)
T KOG4162|consen 730 ELGSPRLAEKRSLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLE 784 (799)
T ss_pred HhCCcchHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhc
Confidence 9998888877 9999999999999999999999999999999999999877643
No 62
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=99.33 E-value=1.2e-10 Score=98.49 Aligned_cols=161 Identities=13% Similarity=0.056 Sum_probs=140.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDM 563 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 563 (666)
.-.|.-+|...|+...|..-+++.++ ..|+.. ++..+...|.+.|..+.|.+.|++..+ +.|+ ..+.|.....
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~--~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls---l~p~~GdVLNNYG~F 112 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALE--HDPSYYLAHLVRAHYYQKLGENDLADESYRKALS---LAPNNGDVLNNYGAF 112 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh---cCCCccchhhhhhHH
Confidence 44566788999999999999999998 667665 888888999999999999999999885 4666 7888999999
Q ss_pred HHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHH
Q 047767 564 LGRAGILDKAEELLQQTPGGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVS 639 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A 639 (666)
+|..|++++|...|+.....| -..+|..++....+.|+.+.|.+.|++.++.+|+.+.....++......|++-+|
T Consensus 113 LC~qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~A 192 (250)
T COG3063 113 LCAQGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPA 192 (250)
T ss_pred HHhCCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHH
Confidence 999999999999999887677 4568888888888899999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhCCC
Q 047767 640 MQIRETALARKL 651 (666)
Q Consensus 640 ~~~~~~~~~~~~ 651 (666)
...++....++.
T Consensus 193 r~~~~~~~~~~~ 204 (250)
T COG3063 193 RLYLERYQQRGG 204 (250)
T ss_pred HHHHHHHHhccc
Confidence 999988877665
No 63
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.30 E-value=1.8e-07 Score=95.74 Aligned_cols=546 Identities=12% Similarity=0.103 Sum_probs=311.8
Q ss_pred hhHHHHhHhcCCChhhHHHHhhcCCC--CCch-----hHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHH
Q 047767 47 SNRTIDDFVKSGHLNSAKKLFDEMPA--RDMV-----TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119 (666)
Q Consensus 47 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~-----~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 119 (666)
+..+.+.|-+.|-...|++.+..+.. +..+ .=..++ .|.-.-.++.++++++.|...+++-+..+.-.+..-
T Consensus 609 ra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv-~yFg~lsve~s~eclkaml~~NirqNlQi~VQvatk 687 (1666)
T KOG0985|consen 609 RAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLV-NYFGSLSVEDSLECLKAMLSANIRQNLQIVVQVATK 687 (1666)
T ss_pred HHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHH-HHHHhcCHHHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 66788889999999999999888763 1111 112233 333344789999999999999888888877777777
Q ss_pred HHcCCChHHHHHHHHHHHHh-----------cCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC---------------
Q 047767 120 CSNAGFYTEGIQIHCRVLSL-----------GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--------------- 173 (666)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--------------- 173 (666)
|...=..+...++|+..... ++..|+.+.-..|.+.++.|++.+.+++.++-.-
T Consensus 688 y~eqlg~~~li~lFE~fks~eGL~yfLgSivn~seDpevh~KYIqAA~kt~QikEvERicresn~YdpErvKNfLkeAkL 767 (1666)
T KOG0985|consen 688 YHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSEDPEVHFKYIQAACKTGQIKEVERICRESNCYDPERVKNFLKEAKL 767 (1666)
T ss_pred HHHHhCHHHHHHHHHhhccchhHHHHHHHHhccccCchHHHHHHHHHHhhccHHHHHHHHhccccCCHHHHHHHHHhccc
Confidence 76665666667777765432 3567888888899999999999999988765321
Q ss_pred ----C------------CcccH------HHHHHHHHhcCCchHHHH-------------HHHHHH--HcCCCCCHhhHHH
Q 047767 174 ----R------------NLATW------NLMLRAFCELSRPDEVLR-------------MYNKMK--AEGVEPNGLSFCY 216 (666)
Q Consensus 174 ----~------------~~~~~------~~li~~~~~~~~~~~a~~-------------~~~~m~--~~~~~p~~~t~~~ 216 (666)
| |.+.| .-.|..|.+.-++...-. +.+.+. -.|..| ...
T Consensus 768 ~DqlPLiiVCDRf~fVhdlvlYLyrnn~~kyIE~yVQkvNps~~p~VvG~LLD~dC~E~~ik~Li~~v~gq~~----~de 843 (1666)
T KOG0985|consen 768 TDQLPLIIVCDRFDFVHDLVLYLYRNNLQKYIEIYVQKVNPSRTPQVVGALLDVDCSEDFIKNLILSVRGQFP----VDE 843 (1666)
T ss_pred cccCceEEEecccccHHHHHHHHHHhhHHHHHHHHHhhcCCcccchhhhhhhcCCCcHHHHHHHHHHHhccCC----hHH
Confidence 1 11111 112333443322222111 111111 123223 334
Q ss_pred HHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHH
Q 047767 217 MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFD 296 (666)
Q Consensus 217 ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~ 296 (666)
+..-+-+.+++..-...++..+..| ..+..++|+|...|..+++--+- .+.+- ..-=+..+.-||...++.-
T Consensus 844 Lv~EvEkRNRLklLlp~LE~~i~eG--~~d~a~hnAlaKIyIDSNNnPE~--fLkeN----~yYDs~vVGkYCEKRDP~l 915 (1666)
T KOG0985|consen 844 LVEEVEKRNRLKLLLPWLESLIQEG--SQDPATHNALAKIYIDSNNNPER--FLKEN----PYYDSKVVGKYCEKRDPHL 915 (1666)
T ss_pred HHHHHHhhhhHHHHHHHHHHHHhcc--CcchHHHhhhhheeecCCCChHH--hcccC----CcchhhHHhhhhcccCCce
Confidence 5556677788888888888888888 77888999999988887664332 11111 1111111222222222211
Q ss_pred HHHHHHHhHh----cCCCCChhhHHHHHHHHhccCCh-----------hhHHHHHHHHHHhCC-CCCchhHHhHHHHHHH
Q 047767 297 ALELFFRMQL----CRKRPSIRSFVEFLNFASRTGNV-----------YFGKQIHGYVTKLGF-DHGSVHVQSALTDMYG 360 (666)
Q Consensus 297 a~~~~~~m~~----~~~~p~~~t~~~ll~~~~~~~~~-----------~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~ 360 (666)
|.-.+++-.. -.+.-....|-...+-+.+..+. .--+.+.+...+.++ +..|+.-.+.-+.++.
T Consensus 916 A~vaYerGqcD~elI~vcNeNSlfK~~aRYlv~R~D~~LW~~VL~e~n~~rRqLiDqVv~tal~E~~dPe~vS~tVkAfM 995 (1666)
T KOG0985|consen 916 ACVAYERGQCDLELINVCNENSLFKSQARYLVERSDPDLWAKVLNEENPYRRQLIDQVVQTALPETQDPEEVSVTVKAFM 995 (1666)
T ss_pred EEEeecccCCcHHHHHhcCchhHHHHHHHHHHhccChHHHHHHHhccChHHHHHHHHHHHhcCCccCChHHHHHHHHHHH
Confidence 1111100000 00000011111111111111111 112233444444333 2225566666677777
Q ss_pred hcCChHHHHHHhccCC-CCCcc-----cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchh
Q 047767 361 KCNVIESSVAVFESAP-GRSLE-----CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLG 434 (666)
Q Consensus 361 ~~~~~~~a~~~~~~~~-~~~~~-----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~ 434 (666)
..+-..+-.++++++. ++++. .-|.++-...+ -+..+.++..+++-.-. .|+.... +...+-++
T Consensus 996 tadLp~eLIELLEKIvL~~S~Fse~~nLQnLLiLtAik-ad~trVm~YI~rLdnyD-a~~ia~i--------ai~~~LyE 1065 (1666)
T KOG0985|consen 996 TADLPNELIELLEKIVLDNSVFSENRNLQNLLILTAIK-ADRTRVMEYINRLDNYD-APDIAEI--------AIENQLYE 1065 (1666)
T ss_pred hcCCcHHHHHHHHHHhcCCcccccchhhhhhHHHHHhh-cChHHHHHHHHHhccCC-chhHHHH--------HhhhhHHH
Confidence 7777777777776653 22222 12333333333 34455666666554321 2222211 33334445
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 047767 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514 (666)
Q Consensus 435 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 514 (666)
+|..+|... ..+....+.|++ .-+.+++|.++-++..+| ..|..+..+-.+.|.+.+|++-|-+
T Consensus 1066 EAF~ifkkf-----~~n~~A~~VLie---~i~~ldRA~efAe~~n~p--~vWsqlakAQL~~~~v~dAieSyik------ 1129 (1666)
T KOG0985|consen 1066 EAFAIFKKF-----DMNVSAIQVLIE---NIGSLDRAYEFAERCNEP--AVWSQLAKAQLQGGLVKDAIESYIK------ 1129 (1666)
T ss_pred HHHHHHHHh-----cccHHHHHHHHH---HhhhHHHHHHHHHhhCCh--HHHHHHHHHHHhcCchHHHHHHHHh------
Confidence 555554322 223333333332 346677777777776655 4588888888888888888776622
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 047767 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594 (666)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 594 (666)
.-|+..|.-+++.+.+.|.|++-.+++...+++ .-+|.+. +.|+-+|++.++..+-.+++ ..|+......++.
T Consensus 1130 adDps~y~eVi~~a~~~~~~edLv~yL~MaRkk-~~E~~id--~eLi~AyAkt~rl~elE~fi----~gpN~A~i~~vGd 1202 (1666)
T KOG0985|consen 1130 ADDPSNYLEVIDVASRTGKYEDLVKYLLMARKK-VREPYID--SELIFAYAKTNRLTELEEFI----AGPNVANIQQVGD 1202 (1666)
T ss_pred cCCcHHHHHHHHHHHhcCcHHHHHHHHHHHHHh-hcCccch--HHHHHHHHHhchHHHHHHHh----cCCCchhHHHHhH
Confidence 124457888888888888888888888877766 5555544 45778888888877766554 3566666677777
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
-|...|.++.|.-+|.. ..-|..|+..+...|++..|...-+++
T Consensus 1203 rcf~~~~y~aAkl~y~~--------vSN~a~La~TLV~LgeyQ~AVD~aRKA 1246 (1666)
T KOG0985|consen 1203 RCFEEKMYEAAKLLYSN--------VSNFAKLASTLVYLGEYQGAVDAARKA 1246 (1666)
T ss_pred HHhhhhhhHHHHHHHHH--------hhhHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 78888888877766654 345667777777777777777665554
No 64
>PF13041 PPR_2: PPR repeat family
Probab=99.30 E-value=8.9e-12 Score=82.03 Aligned_cols=50 Identities=32% Similarity=0.667 Sum_probs=47.4
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC
Q 047767 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH 530 (666)
Q Consensus 481 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~ 530 (666)
||+.+||++|.+|++.|++++|.++|++|.+.|+.||..||+.++++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78999999999999999999999999999999999999999999999875
No 65
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.29 E-value=1.6e-09 Score=96.41 Aligned_cols=266 Identities=11% Similarity=0.090 Sum_probs=157.6
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCCccc-------HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLEC-------CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~-------~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 420 (666)
...+..+|.+.|.+.|..|.|+++.+.+..+...| ...|..-|...|-+|.|.++|..+.+.|.. -
T Consensus 68 t~e~~ltLGnLfRsRGEvDRAIRiHQ~L~~spdlT~~qr~lAl~qL~~Dym~aGl~DRAE~~f~~L~de~ef-a------ 140 (389)
T COG2956 68 TFEAHLTLGNLFRSRGEVDRAIRIHQTLLESPDLTFEQRLLALQQLGRDYMAAGLLDRAEDIFNQLVDEGEF-A------ 140 (389)
T ss_pred hhHHHHHHHHHHHhcchHHHHHHHHHHHhcCCCCchHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHhcchhh-h------
Confidence 33445566666677777777777666654432222 234556677788888888888888765421 1
Q ss_pred HhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCH--------HHHHHHHHH
Q 047767 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNV--------VCFTSIMNG 492 (666)
Q Consensus 421 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~--------~~~~~li~~ 492 (666)
......|+..|-...+|++|+++-+++.+.+. ..|.-|...
T Consensus 141 -------------------------------~~AlqqLl~IYQ~treW~KAId~A~~L~k~~~q~~~~eIAqfyCELAq~ 189 (389)
T COG2956 141 -------------------------------EGALQQLLNIYQATREWEKAIDVAERLVKLGGQTYRVEIAQFYCELAQQ 189 (389)
T ss_pred -------------------------------HHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCCccchhHHHHHHHHHHHH
Confidence 11122345556666666666666655443211 234445555
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChH
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 571 (666)
+....+.+.|..++.+..+ ..|+.+ .-..+.+.....|+++.|.+.++.+.+. +..--+.+...|..+|...|+.+
T Consensus 190 ~~~~~~~d~A~~~l~kAlq--a~~~cvRAsi~lG~v~~~~g~y~~AV~~~e~v~eQ-n~~yl~evl~~L~~~Y~~lg~~~ 266 (389)
T COG2956 190 ALASSDVDRARELLKKALQ--ADKKCVRASIILGRVELAKGDYQKAVEALERVLEQ-NPEYLSEVLEMLYECYAQLGKPA 266 (389)
T ss_pred HhhhhhHHHHHHHHHHHHh--hCccceehhhhhhHHHHhccchHHHHHHHHHHHHh-ChHHHHHHHHHHHHHHHHhCCHH
Confidence 5566777778888877776 345444 2233445677778888888888888766 32222677777788888888888
Q ss_pred HHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh---hcCCchHHHHHHHHHH
Q 047767 572 KAEELLQQTP-GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS---EIGEFEVSMQIRETAL 647 (666)
Q Consensus 572 ~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~---~~g~~~~A~~~~~~~~ 647 (666)
+...++.++. ..+....-..+...-....-.+.|...+.+-+...|.- ..++.|+.... ..|+..+-+..++.|.
T Consensus 267 ~~~~fL~~~~~~~~g~~~~l~l~~lie~~~G~~~Aq~~l~~Ql~r~Pt~-~gf~rl~~~~l~daeeg~~k~sL~~lr~mv 345 (389)
T COG2956 267 EGLNFLRRAMETNTGADAELMLADLIELQEGIDAAQAYLTRQLRRKPTM-RGFHRLMDYHLADAEEGRAKESLDLLRDMV 345 (389)
T ss_pred HHHHHHHHHHHccCCccHHHHHHHHHHHhhChHHHHHHHHHHHhhCCcH-HHHHHHHHhhhccccccchhhhHHHHHHHH
Confidence 8887776544 34444444444444344444566677777777777753 44444544443 2345666666777776
Q ss_pred hCCCCcCC
Q 047767 648 ARKLTRDI 655 (666)
Q Consensus 648 ~~~~~~~~ 655 (666)
..-++..|
T Consensus 346 ge~l~~~~ 353 (389)
T COG2956 346 GEQLRRKP 353 (389)
T ss_pred HHHHhhcC
Confidence 55444433
No 66
>KOG3785 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.28 E-value=4.4e-08 Score=88.36 Aligned_cols=447 Identities=12% Similarity=0.084 Sum_probs=242.2
Q ss_pred HHhHhcCCChhhHHHHhhcCCCC---CchhHHH-HHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCh
Q 047767 51 IDDFVKSGHLNSAKKLFDEMPAR---DMVTYNL-LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126 (666)
Q Consensus 51 ~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 126 (666)
+.-+....++..|..+++--..- .....+. +...+.+.|++++|..+|+-+.+.. .|+......|.....-.|.+
T Consensus 29 Ledfls~rDytGAislLefk~~~~~EEE~~~~lWia~C~fhLgdY~~Al~~Y~~~~~~~-~~~~el~vnLAcc~FyLg~Y 107 (557)
T KOG3785|consen 29 LEDFLSNRDYTGAISLLEFKLNLDREEEDSLQLWIAHCYFHLGDYEEALNVYTFLMNKD-DAPAELGVNLACCKFYLGQY 107 (557)
T ss_pred HHHHHhcccchhHHHHHHHhhccchhhhHHHHHHHHHHHHhhccHHHHHHHHHHHhccC-CCCcccchhHHHHHHHHHHH
Confidence 55566778899999988766521 1222232 4456678999999999999887754 45666666666666678899
Q ss_pred HHHHHHHHHHHHhcCCCchhhhhH-HHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 047767 127 TEGIQIHCRVLSLGFGLNLYIGSP-LVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205 (666)
Q Consensus 127 ~~a~~~~~~~~~~~~~~~~~~~~~-ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (666)
.+|.++-... |+...... |...-.+.++-++-..+-+++.... ..--+|.......-.+.+|+++|++....
T Consensus 108 ~eA~~~~~ka------~k~pL~~RLlfhlahklndEk~~~~fh~~LqD~~-EdqLSLAsvhYmR~HYQeAIdvYkrvL~d 180 (557)
T KOG3785|consen 108 IEAKSIAEKA------PKTPLCIRLLFHLAHKLNDEKRILTFHSSLQDTL-EDQLSLASVHYMRMHYQEAIDVYKRVLQD 180 (557)
T ss_pred HHHHHHHhhC------CCChHHHHHHHHHHHHhCcHHHHHHHHHHHhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 9998876653 44444444 4455556677777666655555422 12223333333344789999999998875
Q ss_pred CCCCCHhhHHHHHHH-hcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHH
Q 047767 206 GVEPNGLSFCYMVRG-CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284 (666)
Q Consensus 206 ~~~p~~~t~~~ll~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 284 (666)
.|.-...+.-+.. +.+..-++-+.++++.-++. ++.+....|..+....+.-.-..|+.-..++...-...| ..
T Consensus 181 --n~ey~alNVy~ALCyyKlDYydvsqevl~vYL~q--~pdStiA~NLkacn~fRl~ngr~ae~E~k~ladN~~~~~-~f 255 (557)
T KOG3785|consen 181 --NPEYIALNVYMALCYYKLDYYDVSQEVLKVYLRQ--FPDSTIAKNLKACNLFRLINGRTAEDEKKELADNIDQEY-PF 255 (557)
T ss_pred --ChhhhhhHHHHHHHHHhcchhhhHHHHHHHHHHh--CCCcHHHHHHHHHHHhhhhccchhHHHHHHHHhcccccc-hh
Confidence 3555555555554 45777778888888887776 466666666665555443222222211111110000001 11
Q ss_pred HHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC
Q 047767 285 VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV 364 (666)
Q Consensus 285 i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 364 (666)
+.-.++.+ ++--.+-+.|.+++--+.+. -+.+...|+-.|.+.++
T Consensus 256 ~~~l~rHN------------------------------LVvFrngEgALqVLP~L~~~-----IPEARlNL~iYyL~q~d 300 (557)
T KOG3785|consen 256 IEYLCRHN------------------------------LVVFRNGEGALQVLPSLMKH-----IPEARLNLIIYYLNQND 300 (557)
T ss_pred HHHHHHcC------------------------------eEEEeCCccHHHhchHHHhh-----ChHhhhhheeeeccccc
Confidence 11112111 00011223333333333222 23334455666777888
Q ss_pred hHHHHHHhccCCCCCcccHHHHHHHHHhcCC-------hhHHHHHHHHHHHcCCCCC----HHHHHHHhchhhhhcccch
Q 047767 365 IESSVAVFESAPGRSLECCNSLMTSLLHSGN-------IKDAVEMFGFMVDEGIGLD----EVTLSTTLKALSVSASANL 433 (666)
Q Consensus 365 ~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~-------~~~a~~~~~~m~~~~~~p~----~~~~~~ll~~~~~~~~~~~ 433 (666)
+++|..+.+.+...++.-|-.-.-.++..|+ ..-|...|+-.-+++..-| ..+..+. .--..++
T Consensus 301 VqeA~~L~Kdl~PttP~EyilKgvv~aalGQe~gSreHlKiAqqffqlVG~Sa~ecDTIpGRQsmAs~-----fFL~~qF 375 (557)
T KOG3785|consen 301 VQEAISLCKDLDPTTPYEYILKGVVFAALGQETGSREHLKIAQQFFQLVGESALECDTIPGRQSMASY-----FFLSFQF 375 (557)
T ss_pred HHHHHHHHhhcCCCChHHHHHHHHHHHHhhhhcCcHHHHHHHHHHHHHhcccccccccccchHHHHHH-----HHHHHHH
Confidence 8888888777755444433222222333333 2223333333222222211 1111110 1112233
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCC---CHHHHHH-HHHHHHHcCChhHHHHHHHHH
Q 047767 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP---NVVCFTS-IMNGYSRNGMGREALDMLEVM 509 (666)
Q Consensus 434 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~-li~~~~~~~~~~~a~~~~~~m 509 (666)
+...-.+..+...=...|...+| +..+++..|.+.+|+++|-.+..| |-.+|.+ |.++|.+.+.++.|+.++-.+
T Consensus 376 ddVl~YlnSi~sYF~NdD~Fn~N-~AQAk~atgny~eaEelf~~is~~~ikn~~~Y~s~LArCyi~nkkP~lAW~~~lk~ 454 (557)
T KOG3785|consen 376 DDVLTYLNSIESYFTNDDDFNLN-LAQAKLATGNYVEAEELFIRISGPEIKNKILYKSMLARCYIRNKKPQLAWDMMLKT 454 (557)
T ss_pred HHHHHHHHHHHHHhcCcchhhhH-HHHHHHHhcChHHHHHHHhhhcChhhhhhHHHHHHHHHHHHhcCCchHHHHHHHhc
Confidence 33333444443333334444443 667777788888888888777754 3445544 456778888888776655333
Q ss_pred HHcCCCCCHHHHH-HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHH
Q 047767 510 IQRGLIPDKVTFL-CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY 557 (666)
Q Consensus 510 ~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~ 557 (666)
..+.+..+.. .+.+-|.+.+.+=-|-+.|+.+. ...|+++.|
T Consensus 455 ---~t~~e~fsLLqlIAn~CYk~~eFyyaaKAFd~lE---~lDP~pEnW 497 (557)
T KOG3785|consen 455 ---NTPSERFSLLQLIANDCYKANEFYYAAKAFDELE---ILDPTPENW 497 (557)
T ss_pred ---CCchhHHHHHHHHHHHHHHHHHHHHHHHhhhHHH---ccCCCcccc
Confidence 2233333333 33456777777777777777776 346777666
No 67
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.28 E-value=2.3e-10 Score=101.59 Aligned_cols=225 Identities=12% Similarity=0.079 Sum_probs=187.2
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 047767 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463 (666)
Q Consensus 384 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (666)
+.+.++|.+.|.+.+|..-|+.-.++...| .+|-.|-..|.
T Consensus 227 ~Q~gkCylrLgm~r~AekqlqssL~q~~~~---------------------------------------dTfllLskvY~ 267 (478)
T KOG1129|consen 227 QQMGKCYLRLGMPRRAEKQLQSSLTQFPHP---------------------------------------DTFLLLSKVYQ 267 (478)
T ss_pred HHHHHHHHHhcChhhhHHHHHHHhhcCCch---------------------------------------hHHHHHHHHHH
Confidence 567788999999999999888877763333 33334556788
Q ss_pred hhCCHHHHHHHhccCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHH
Q 047767 464 RCGHIELSHQVFEKIPS--P-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQL 539 (666)
Q Consensus 464 ~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~ 539 (666)
+..+++.|..+|.+..+ | |+....-+.+.+-..++.++|.++++...+ ..|.. .....+...|.-.++++-|..
T Consensus 268 ridQP~~AL~~~~~gld~fP~~VT~l~g~ARi~eam~~~~~a~~lYk~vlk--~~~~nvEaiAcia~~yfY~~~PE~Alr 345 (478)
T KOG1129|consen 268 RIDQPERALLVIGEGLDSFPFDVTYLLGQARIHEAMEQQEDALQLYKLVLK--LHPINVEAIACIAVGYFYDNNPEMALR 345 (478)
T ss_pred HhccHHHHHHHHhhhhhcCCchhhhhhhhHHHHHHHHhHHHHHHHHHHHHh--cCCccceeeeeeeeccccCCChHHHHH
Confidence 99999999999998875 4 444455677888889999999999999988 45544 466677778888999999999
Q ss_pred HHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC---CCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP---GGG--DCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 540 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
+|+++.+. |+ -++..|+.+.-++.-.++++-++.-|++.. ..| ....|-.+.......||+..|.+.|+-++.
T Consensus 346 yYRRiLqm-G~-~speLf~NigLCC~yaqQ~D~~L~sf~RAlstat~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrlaL~ 423 (478)
T KOG1129|consen 346 YYRRILQM-GA-QSPELFCNIGLCCLYAQQIDLVLPSFQRALSTATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLALT 423 (478)
T ss_pred HHHHHHHh-cC-CChHHHhhHHHHHHhhcchhhhHHHHHHHHhhccCcchhhhhhhccceeEEeccchHHHHHHHHHHhc
Confidence 99999998 76 468899999999999999999999888655 234 457888898888999999999999999999
Q ss_pred cCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 615 LEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 615 ~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
.+|++..++++|+-.-.+.|+.++|..++..+.+...
T Consensus 424 ~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P 460 (478)
T KOG1129|consen 424 SDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMP 460 (478)
T ss_pred cCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCc
Confidence 9999999999999999999999999999998876544
No 68
>PF13041 PPR_2: PPR repeat family
Probab=99.26 E-value=1.3e-11 Score=81.31 Aligned_cols=50 Identities=20% Similarity=0.661 Sum_probs=47.1
Q ss_pred CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcc
Q 047767 174 RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSI 223 (666)
Q Consensus 174 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~ 223 (666)
||+.+||++|.+|++.|++++|+++|++|.+.|+.||..||+.+|++|++
T Consensus 1 P~~~~yn~li~~~~~~~~~~~a~~l~~~M~~~g~~P~~~Ty~~li~~~~k 50 (50)
T PF13041_consen 1 PDVVTYNTLISGYCKAGKFEEALKLFKEMKKRGIKPDSYTYNILINGLCK 50 (50)
T ss_pred CchHHHHHHHHHHHHCcCHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHcC
Confidence 78899999999999999999999999999999999999999999999874
No 69
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.24 E-value=2.6e-07 Score=90.45 Aligned_cols=234 Identities=11% Similarity=-0.001 Sum_probs=130.7
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHh
Q 047767 78 YNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157 (666)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 157 (666)
|..++..| ..+++...+...+.+... .+-...|.....-.+...|+.++|........+.. ..+...|..+.-.+-.
T Consensus 11 F~~~lk~y-E~kQYkkgLK~~~~iL~k-~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~ 87 (700)
T KOG1156|consen 11 FRRALKCY-ETKQYKKGLKLIKQILKK-FPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRS 87 (700)
T ss_pred HHHHHHHH-HHHHHHhHHHHHHHHHHh-CCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhh
Confidence 44445444 566777777777777663 33344555555555566788888887777766644 3445566666666666
Q ss_pred cCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC-HhhHHHHHHHhcccCChHHHHHH
Q 047767 158 MGPSVRALDLFDELPE---RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN-GLSFCYMVRGCSIGMLLDEGKQL 233 (666)
Q Consensus 158 ~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~ 233 (666)
..++++|.+.|..... .|...|.-+--.-++.++++........+.+. .|+ ...|..+..+.--.|+...|..+
T Consensus 88 dK~Y~eaiKcy~nAl~~~~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql--~~~~ra~w~~~Avs~~L~g~y~~A~~i 165 (700)
T KOG1156|consen 88 DKKYDEAIKCYRNALKIEKDNLQILRDLSLLQIQMRDYEGYLETRNQLLQL--RPSQRASWIGFAVAQHLLGEYKMALEI 165 (700)
T ss_pred hhhHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHh--hhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6777777777765543 33444554444445566777666666655553 333 33455555566667777777777
Q ss_pred HHHHHHhCCCCchHHHHHHHHH------HHHccCChHHHHHHhccCCCC--Chh-hHHHHHHHHHcCCChHHHHHHHHHh
Q 047767 234 HSHVIKLGWVDVNIFVANALVD------FYSACGSLIEAKKSFDFIPVD--DVI-SWNSIVSIYADYDLIFDALELFFRM 304 (666)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~------~~~~~~~~~~A~~~~~~~~~~--~~~-~~~~li~~~~~~g~~~~a~~~~~~m 304 (666)
++...+.....|+...+..... ...+.|..++|.+.+...... |-. .-..-...+.+.+++++|..++..+
T Consensus 166 l~ef~~t~~~~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~Dkla~~e~ka~l~~kl~~lEeA~~~y~~L 245 (700)
T KOG1156|consen 166 LEEFEKTQNTSPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVDKLAFEETKADLLMKLGQLEEAVKVYRRL 245 (700)
T ss_pred HHHHHHhhccCCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHHHHHHhhhHHHHHHHHhhHHhHHHHHHHH
Confidence 7777665422344444433222 233455555555555443321 111 1122334455556666666666666
Q ss_pred HhcCCCCChhhHHH
Q 047767 305 QLCRKRPSIRSFVE 318 (666)
Q Consensus 305 ~~~~~~p~~~t~~~ 318 (666)
+.. .||..-|..
T Consensus 246 l~r--nPdn~~Yy~ 257 (700)
T KOG1156|consen 246 LER--NPDNLDYYE 257 (700)
T ss_pred Hhh--CchhHHHHH
Confidence 543 344444433
No 70
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.21 E-value=1.4e-09 Score=103.31 Aligned_cols=189 Identities=15% Similarity=0.089 Sum_probs=90.8
Q ss_pred HHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcC
Q 047767 455 SCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNH 530 (666)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~ 530 (666)
+..+...|.+.|+.++|...|++..+ .+...|+.+...+...|++++|...|++..+ +.|+. .+|..+..++..
T Consensus 67 ~~~~g~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~--l~P~~~~a~~~lg~~l~~ 144 (296)
T PRK11189 67 HYERGVLYDSLGLRALARNDFSQALALRPDMADAYNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYNYAYLNRGIALYY 144 (296)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHH
Confidence 33344445555666666665555442 2345566666666666666666666666655 44543 345555555555
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHH
Q 047767 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVAN 610 (666)
Q Consensus 531 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 610 (666)
.|++++|.+.++...+. .|+..........+...+++++|.+.+++....-+...|. ........|+...+ +.++
T Consensus 145 ~g~~~eA~~~~~~al~~---~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~~~~~~~~-~~~~~~~lg~~~~~-~~~~ 219 (296)
T PRK11189 145 GGRYELAQDDLLAFYQD---DPNDPYRALWLYLAESKLDPKQAKENLKQRYEKLDKEQWG-WNIVEFYLGKISEE-TLME 219 (296)
T ss_pred CCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhhCCccccH-HHHHHHHccCCCHH-HHHH
Confidence 66666666666665543 3432211111222334455666666664322111111121 11122223333222 1222
Q ss_pred HHH-------hcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 611 ILM-------ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 611 ~~~-------~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.+. ++.|+.+.+|..||.++...|++++|+..|++..+..
T Consensus 220 ~~~~~~~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~ 266 (296)
T PRK11189 220 RLKAGATDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANN 266 (296)
T ss_pred HHHhcCCCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 222 3334445556666666666666666666666555443
No 71
>COG2956 Predicted N-acetylglucosaminyl transferase [Carbohydrate transport and metabolism]
Probab=99.20 E-value=1.4e-08 Score=90.56 Aligned_cols=60 Identities=17% Similarity=0.118 Sum_probs=30.7
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 047767 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343 (666)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 343 (666)
.|..-|...|-+|.|..+|..+.+.+. .-......++..|-...++++|..+-..+.+.+
T Consensus 112 qL~~Dym~aGl~DRAE~~f~~L~de~e-fa~~AlqqLl~IYQ~treW~KAId~A~~L~k~~ 171 (389)
T COG2956 112 QLGRDYMAAGLLDRAEDIFNQLVDEGE-FAEGALQQLLNIYQATREWEKAIDVAERLVKLG 171 (389)
T ss_pred HHHHHHHHhhhhhHHHHHHHHHhcchh-hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcC
Confidence 345566677777777777777665331 112233334444444444444444444444433
No 72
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.19 E-value=3.5e-09 Score=104.68 Aligned_cols=191 Identities=16% Similarity=0.197 Sum_probs=147.8
Q ss_pred HHHHHHHhhCCHHHHHHHhccCCC----------CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHH-----cCCCCCHH-
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIPS----------PN-VVCFTSIMNGYSRNGMGREALDMLEVMIQ-----RGLIPDKV- 519 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~-----~g~~p~~~- 519 (666)
.+...|...+++++|..+|+++.. |. ..+++.|..+|.+.|++++|..++++..+ .|..+..+
T Consensus 246 ~~a~~y~~~~k~~eAv~ly~~AL~i~e~~~G~~h~~va~~l~nLa~ly~~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~ 325 (508)
T KOG1840|consen 246 ILALVYRSLGKYDEAVNLYEEALTIREEVFGEDHPAVAATLNNLAVLYYKQGKFAEAEEYCERALEIYEKLLGASHPEVA 325 (508)
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhccCChHHHHHHHHHHHHHHHHhhccChHHHH
Confidence 466788889999999888887762 22 35677788889999999999888877653 12233222
Q ss_pred -HHHHHHHHhcCCCcHHHHHHHHHHhHHhhC--CCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC-------C--C
Q 047767 520 -TFLCVLAGCNHSGMVKEGQLVFNSMKSVYG--IDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP-------G--G 583 (666)
Q Consensus 520 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~--~ 583 (666)
.++.+...|...+++++|..+++...+.+. ..++ ..+++.|...|...|++++|.++++++. . .
T Consensus 326 ~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~ 405 (508)
T KOG1840|consen 326 AQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLAELYLKMGKYKEAEELYKKAIQILRELLGKKD 405 (508)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhcccCcC
Confidence 466777789999999999999998776543 2222 5678999999999999999999998764 1 1
Q ss_pred C-CHHHHHHHHHHHHhhCChHHHHHHHHHHHh----cCCC---CcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 584 G-DCMMWSSLLRSCRVHGNEIIGRRVANILME----LEPV---DFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 584 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
+ ....++.+...|.+.+++.+|.++|.+... ..|+ -..+|.+|+.+|.+.|++++|.++.+...
T Consensus 406 ~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~nL~~~Y~~~g~~e~a~~~~~~~~ 477 (508)
T KOG1840|consen 406 YGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYLNLAALYRAQGNYEAAEELEEKVL 477 (508)
T ss_pred hhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 2 356778888899999999999988888665 3344 45568899999999999999999988776
No 73
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.18 E-value=5e-06 Score=82.65 Aligned_cols=188 Identities=12% Similarity=0.118 Sum_probs=103.0
Q ss_pred cCCChhhHHHHhhcCCCCCch--hHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHH
Q 047767 56 KSGHLNSAKKLFDEMPARDMV--TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIH 133 (666)
Q Consensus 56 ~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~ 133 (666)
...+|.+|+.+++.+..+++. -|..+..-|+..|+++.|.++|.+. ..++-.|..|.+.|+|..|.++-
T Consensus 744 ~akew~kai~ildniqdqk~~s~yy~~iadhyan~~dfe~ae~lf~e~---------~~~~dai~my~k~~kw~da~kla 814 (1636)
T KOG3616|consen 744 GAKEWKKAISILDNIQDQKTASGYYGEIADHYANKGDFEIAEELFTEA---------DLFKDAIDMYGKAGKWEDAFKLA 814 (1636)
T ss_pred hhhhhhhhHhHHHHhhhhccccccchHHHHHhccchhHHHHHHHHHhc---------chhHHHHHHHhccccHHHHHHHH
Confidence 445566666666655543322 2455555666666666666666432 12445566666666666666655
Q ss_pred HHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhh
Q 047767 134 CRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213 (666)
Q Consensus 134 ~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 213 (666)
++. +|.......|-+-..-+-..|++.+|+++|-.+..|+. .|..|-+.|..+..+++.++-.-. .-..|
T Consensus 815 ~e~--~~~e~t~~~yiakaedldehgkf~eaeqlyiti~~p~~-----aiqmydk~~~~ddmirlv~k~h~d---~l~dt 884 (1636)
T KOG3616|consen 815 EEC--HGPEATISLYIAKAEDLDEHGKFAEAEQLYITIGEPDK-----AIQMYDKHGLDDDMIRLVEKHHGD---HLHDT 884 (1636)
T ss_pred HHh--cCchhHHHHHHHhHHhHHhhcchhhhhheeEEccCchH-----HHHHHHhhCcchHHHHHHHHhChh---hhhHH
Confidence 443 23333334444444445556666666666666666543 345566666666666665442211 11234
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhcc
Q 047767 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDF 272 (666)
Q Consensus 214 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~ 272 (666)
...+.+-+-..|++..|+.-|-+.. -|.+.++.|-.++-+++|.++-..
T Consensus 885 ~~~f~~e~e~~g~lkaae~~flea~----------d~kaavnmyk~s~lw~dayriakt 933 (1636)
T KOG3616|consen 885 HKHFAKELEAEGDLKAAEEHFLEAG----------DFKAAVNMYKASELWEDAYRIAKT 933 (1636)
T ss_pred HHHHHHHHHhccChhHHHHHHHhhh----------hHHHHHHHhhhhhhHHHHHHHHhc
Confidence 4455555666777777766553322 234455666667777777666543
No 74
>PRK12370 invasion protein regulator; Provisional
Probab=99.17 E-value=3.2e-09 Score=110.57 Aligned_cols=245 Identities=11% Similarity=-0.026 Sum_probs=164.7
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhh---------cccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 047767 394 GNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS---------ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464 (666)
Q Consensus 394 ~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---------~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (666)
+.+++|...|++..+. .|+.......+.. ++. ..++.+.|...++.+.+.. +.+...+..+...+..
T Consensus 275 ~~~~~A~~~~~~Al~l--dP~~a~a~~~La~-~~~~~~~~g~~~~~~~~~~A~~~~~~Al~ld-P~~~~a~~~lg~~~~~ 350 (553)
T PRK12370 275 YSLQQALKLLTQCVNM--SPNSIAPYCALAE-CYLSMAQMGIFDKQNAMIKAKEHAIKATELD-HNNPQALGLLGLINTI 350 (553)
T ss_pred HHHHHHHHHHHHHHhc--CCccHHHHHHHHH-HHHHHHHcCCcccchHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHH
Confidence 4467899999998875 5655443333322 122 1233677777777777664 3456667777778888
Q ss_pred hCCHHHHHHHhccCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHH
Q 047767 465 CGHIELSHQVFEKIPS--P-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLV 540 (666)
Q Consensus 465 ~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~ 540 (666)
.|++++|...|++..+ | +...+..+..++...|++++|+..+++..+ +.|+.. .+..++..+...|++++|...
T Consensus 351 ~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~G~~~eAi~~~~~Al~--l~P~~~~~~~~~~~~~~~~g~~eeA~~~ 428 (553)
T PRK12370 351 HSEYIVGSLLFKQANLLSPISADIKYYYGWNLFMAGQLEEALQTINECLK--LDPTRAAAGITKLWITYYHTGIDDAIRL 428 (553)
T ss_pred ccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCChhhHHHHHHHHHhccCHHHHHHH
Confidence 8999999999988763 4 456777788888889999999999999888 566543 333344445667888999999
Q ss_pred HHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 541 FNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGD-CMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 541 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
++++... ..|+ +..+..+..+|...|++++|...++++. ..|+ ...++.+...+...| +.|...++++.+..-
T Consensus 429 ~~~~l~~--~~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~a~~~l~~ll~~~~ 504 (553)
T PRK12370 429 GDELRSQ--HLQDNPILLSMQVMFLSLKGKHELARKLTKEISTQEITGLIAVNLLYAEYCQNS--ERALPTIREFLESEQ 504 (553)
T ss_pred HHHHHHh--ccccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhccchhHHHHHHHHHHHhccH--HHHHHHHHHHHHHhh
Confidence 8887754 2354 5557778888888999999999888765 3443 344445555566666 467777777666332
Q ss_pred CCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 618 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
..+.....+..+|.-.|+.+.+..+ +++.+.
T Consensus 505 ~~~~~~~~~~~~~~~~g~~~~~~~~-~~~~~~ 535 (553)
T PRK12370 505 RIDNNPGLLPLVLVAHGEAIAEKMW-NKFKNE 535 (553)
T ss_pred HhhcCchHHHHHHHHHhhhHHHHHH-HHhhcc
Confidence 2222333367777777887777766 666654
No 75
>TIGR02521 type_IV_pilW type IV pilus biogenesis/stability protein PilW. Members of this family are designated PilF in ref (PubMed:8973346) and PilW in ref (PubMed:15612916). This outer membrane protein is required both for pilus stability and for pilus function such as adherence to human cells. Members of this family contain copies of the TPR (tetratricopeptide repeat) domain.
Probab=99.16 E-value=2.5e-09 Score=99.27 Aligned_cols=164 Identities=12% Similarity=0.113 Sum_probs=142.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHH
Q 047767 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560 (666)
Q Consensus 482 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 560 (666)
....+..+...+...|++++|...+++..+. .|+ ...+..+...+...|++++|.+.+++..+. .+.+...+..+
T Consensus 30 ~~~~~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~ 105 (234)
T TIGR02521 30 AAKIRVQLALGYLEQGDLEVAKENLDKALEH--DPDDYLAYLALALYYQQLGELEKAEDSFRRALTL--NPNNGDVLNNY 105 (234)
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CCCCHHHHHHH
Confidence 3567778889999999999999999999874 454 457788888999999999999999999865 23346778889
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCc
Q 047767 561 IDMLGRAGILDKAEELLQQTPGGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636 (666)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 636 (666)
...+...|++++|.+.+++....+ ....+..+...+...|++++|...++++++..|+++..+..++.++...|++
T Consensus 106 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 185 (234)
T TIGR02521 106 GTFLCQQGKYEQAMQQFEQAIEDPLYPQPARSLENAGLCALKAGDFDKAEKYLTRALQIDPQRPESLLELAELYYLRGQY 185 (234)
T ss_pred HHHHHHcccHHHHHHHHHHHHhccccccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCChHHHHHHHHHHHHcCCH
Confidence 999999999999999999876322 4556777888899999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHhC
Q 047767 637 EVSMQIRETALAR 649 (666)
Q Consensus 637 ~~A~~~~~~~~~~ 649 (666)
++|...+++..+.
T Consensus 186 ~~A~~~~~~~~~~ 198 (234)
T TIGR02521 186 KDARAYLERYQQT 198 (234)
T ss_pred HHHHHHHHHHHHh
Confidence 9999999998876
No 76
>PRK12370 invasion protein regulator; Provisional
Probab=99.16 E-value=3.6e-09 Score=110.22 Aligned_cols=212 Identities=9% Similarity=-0.060 Sum_probs=149.6
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHH
Q 047767 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472 (666)
Q Consensus 393 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (666)
.+++++|...+++..+. .|+.......+.. .+...++++.|...++.+.+.+ +.+...+..+...+...|++++|.
T Consensus 317 ~~~~~~A~~~~~~Al~l--dP~~~~a~~~lg~-~~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~l~~~G~~~eAi 392 (553)
T PRK12370 317 QNAMIKAKEHAIKATEL--DHNNPQALGLLGL-INTIHSEYIVGSLLFKQANLLS-PISADIKYYYGWNLFMAGQLEEAL 392 (553)
T ss_pred chHHHHHHHHHHHHHhc--CCCCHHHHHHHHH-HHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 35578999999998875 4544433333322 2678899999999999998876 445667778889999999999999
Q ss_pred HHhccCCC--CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhh
Q 047767 473 QVFEKIPS--PNV-VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548 (666)
Q Consensus 473 ~~~~~~~~--~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 548 (666)
..+++..+ |+. ..+..++..+...|++++|...+++..+.. .|+.. .+..+..++...|+.++|.+.+.++...
T Consensus 393 ~~~~~Al~l~P~~~~~~~~~~~~~~~~g~~eeA~~~~~~~l~~~-~p~~~~~~~~la~~l~~~G~~~eA~~~~~~~~~~- 470 (553)
T PRK12370 393 QTINECLKLDPTRAAAGITKLWITYYHTGIDDAIRLGDELRSQH-LQDNPILLSMQVMFLSLKGKHELARKLTKEISTQ- 470 (553)
T ss_pred HHHHHHHhcCCCChhhHHHHHHHHHhccCHHHHHHHHHHHHHhc-cccCHHHHHHHHHHHHhCCCHHHHHHHHHHhhhc-
Confidence 99998874 442 233444555777899999999999988743 45444 4667777888999999999999987643
Q ss_pred CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 549 GIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP----GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 549 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
.|+ ....+.+...|...|+ +|...++.+. ..+....+ +...+.-.|+.+.+... +++.+..+
T Consensus 471 --~~~~~~~~~~l~~~~~~~g~--~a~~~l~~ll~~~~~~~~~~~~--~~~~~~~~g~~~~~~~~-~~~~~~~~ 537 (553)
T PRK12370 471 --EITGLIAVNLLYAEYCQNSE--RALPTIREFLESEQRIDNNPGL--LPLVLVAHGEAIAEKMW-NKFKNEDN 537 (553)
T ss_pred --cchhHHHHHHHHHHHhccHH--HHHHHHHHHHHHhhHhhcCchH--HHHHHHHHhhhHHHHHH-HHhhccch
Confidence 455 4555667777888884 7777666544 23333333 34445566777766665 66666543
No 77
>KOG2376 consensus Signal recognition particle, subunit Srp72 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.12 E-value=1.3e-06 Score=84.79 Aligned_cols=443 Identities=13% Similarity=0.072 Sum_probs=203.3
Q ss_pred HHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhH--HHHHh--Hhc
Q 047767 83 SGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSP--LVDLY--MRM 158 (666)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--ll~~~--~~~ 158 (666)
+-+...|++++|.....++...+ +-+...+..-+-++++.+.+++|..+.+.-.. ..+++. +=.+| .+.
T Consensus 20 n~~~~~~e~e~a~k~~~Kil~~~-pdd~~a~~cKvValIq~~ky~~ALk~ikk~~~------~~~~~~~~fEKAYc~Yrl 92 (652)
T KOG2376|consen 20 NRHGKNGEYEEAVKTANKILSIV-PDDEDAIRCKVVALIQLDKYEDALKLIKKNGA------LLVINSFFFEKAYCEYRL 92 (652)
T ss_pred HHhccchHHHHHHHHHHHHHhcC-CCcHhhHhhhHhhhhhhhHHHHHHHHHHhcch------hhhcchhhHHHHHHHHHc
Confidence 34455666777777777766654 44555566666666677777776644432111 011111 12333 355
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-CHhhHHHHHHHhcccCChHHHHHHHHHH
Q 047767 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP-NGLSFCYMVRGCSIGMLLDEGKQLHSHV 237 (666)
Q Consensus 159 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~~~~~~~~~~a~~~~~~~ 237 (666)
+..++|+..++...+.+..+...-...+.+.|++++|+.+|+.+.+++.+- +...-..++.+-. ...+. + +
T Consensus 93 nk~Dealk~~~~~~~~~~~ll~L~AQvlYrl~~ydealdiY~~L~kn~~dd~d~~~r~nl~a~~a----~l~~~-~---~ 164 (652)
T KOG2376|consen 93 NKLDEALKTLKGLDRLDDKLLELRAQVLYRLERYDEALDIYQHLAKNNSDDQDEERRANLLAVAA----ALQVQ-L---L 164 (652)
T ss_pred ccHHHHHHHHhcccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCchHHHHHHHHHHHHHH----hhhHH-H---H
Confidence 677777777775554444455555566667777777777777776654321 1111111111110 00000 0 1
Q ss_pred HHhCCCC-chHHHHHHHHHHHHccCChHHHHHHhccC--------CCCCh-----h-----hHHHHHHHHHcCCChHHHH
Q 047767 238 IKLGWVD-VNIFVANALVDFYSACGSLIEAKKSFDFI--------PVDDV-----I-----SWNSIVSIYADYDLIFDAL 298 (666)
Q Consensus 238 ~~~~~~~-~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--------~~~~~-----~-----~~~~li~~~~~~g~~~~a~ 298 (666)
.....++ .+...+-.....+...|++.+|+++++.. ...|. . .---|...+...|+.++|.
T Consensus 165 q~v~~v~e~syel~yN~Ac~~i~~gky~qA~elL~kA~~~~~e~l~~~d~~eEeie~el~~IrvQlayVlQ~~Gqt~ea~ 244 (652)
T KOG2376|consen 165 QSVPEVPEDSYELLYNTACILIENGKYNQAIELLEKALRICREKLEDEDTNEEEIEEELNPIRVQLAYVLQLQGQTAEAS 244 (652)
T ss_pred HhccCCCcchHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHHHHHHHHhcchHHHH
Confidence 1111011 12222233344556667777777766554 11111 0 1122445667789999999
Q ss_pred HHHHHhHhcCCCCChhhHHHHHH---HHhccCChhh--HHHHHHHHHHhC-------CC-CCchhHHhHHHHHHHhcCCh
Q 047767 299 ELFFRMQLCRKRPSIRSFVEFLN---FASRTGNVYF--GKQIHGYVTKLG-------FD-HGSVHVQSALTDMYGKCNVI 365 (666)
Q Consensus 299 ~~~~~m~~~~~~p~~~t~~~ll~---~~~~~~~~~~--a~~~~~~~~~~~-------~~-~~~~~~~~~l~~~~~~~~~~ 365 (666)
.++...+... .+|......+.+ ++..-.++.. ....++...... +. .....++...+....-.+..
T Consensus 245 ~iy~~~i~~~-~~D~~~~Av~~NNLva~~~d~~~~d~~~l~~k~~~~~~l~~~~l~~Ls~~qk~~i~~N~~lL~l~tnk~ 323 (652)
T KOG2376|consen 245 SIYVDIIKRN-PADEPSLAVAVNNLVALSKDQNYFDGDLLKSKKSQVFKLAEFLLSKLSKKQKQAIYRNNALLALFTNKM 323 (652)
T ss_pred HHHHHHHHhc-CCCchHHHHHhcchhhhccccccCchHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhH
Confidence 9998887764 334333222222 2222222221 111111110000 00 00111122222222223444
Q ss_pred HHHHHHhccCCCCCc-ccHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHH
Q 047767 366 ESSVAVFESAPGRSL-ECCNSLMTSLLH--SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442 (666)
Q Consensus 366 ~~a~~~~~~~~~~~~-~~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 442 (666)
+.+.++....+...+ ..+..++....+ ...+.++.+++...-+. .|..
T Consensus 324 ~q~r~~~a~lp~~~p~~~~~~ll~~~t~~~~~~~~ka~e~L~~~~~~--~p~~--------------------------- 374 (652)
T KOG2376|consen 324 DQVRELSASLPGMSPESLFPILLQEATKVREKKHKKAIELLLQFADG--HPEK--------------------------- 374 (652)
T ss_pred HHHHHHHHhCCccCchHHHHHHHHHHHHHHHHHHhhhHHHHHHHhcc--CCch---------------------------
Confidence 555555544444321 223333332221 12344444444444332 2222
Q ss_pred HHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhc--------cCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 047767 443 AIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE--------KIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512 (666)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--------~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 512 (666)
+..+.-..+......|+++.|.+++. .+.+ ..+.+...++..+.+.++.+.|..++++.+..
T Consensus 375 --------s~~v~L~~aQl~is~gn~~~A~~il~~~~~~~~ss~~~~~~~P~~V~aiv~l~~~~~~~~~a~~vl~~Ai~~ 446 (652)
T KOG2376|consen 375 --------SKVVLLLRAQLKISQGNPEVALEILSLFLESWKSSILEAKHLPGTVGAIVALYYKIKDNDSASAVLDSAIKW 446 (652)
T ss_pred --------hHHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhhhhhhhhccChhHHHHHHHHHHhccCCccHHHHHHHHHHH
Confidence 22233334445555566666666555 2221 22333444555555666666566665555431
Q ss_pred --CCCCCHHHHH----HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 513 --GLIPDKVTFL----CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 513 --g~~p~~~~~~----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
.-.+...... -....-.+.|+-++|..+++++.+. .++|..+...++-+|++. ++++|..+-..+.
T Consensus 447 ~~~~~t~s~~l~~~~~~aa~f~lr~G~~~ea~s~leel~k~--n~~d~~~l~~lV~a~~~~-d~eka~~l~k~L~ 518 (652)
T KOG2376|consen 447 WRKQQTGSIALLSLMREAAEFKLRHGNEEEASSLLEELVKF--NPNDTDLLVQLVTAYARL-DPEKAESLSKKLP 518 (652)
T ss_pred HHHhcccchHHHhHHHHHhHHHHhcCchHHHHHHHHHHHHh--CCchHHHHHHHHHHHHhc-CHHHHHHHhhcCC
Confidence 0112222222 2222333457777777777777653 345567777777776654 4566666666554
No 78
>KOG1129 consensus TPR repeat-containing protein [General function prediction only]
Probab=99.10 E-value=1.1e-09 Score=97.40 Aligned_cols=240 Identities=13% Similarity=0.044 Sum_probs=195.6
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchh
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPG--RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL 425 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~ 425 (666)
|-.--..+.++|.+.|-+.+|.+.|+.... +-+.+|-.+-++|.+.+++..|+.++.+-.+. .|-.+||..-
T Consensus 222 dwwWk~Q~gkCylrLgm~r~AekqlqssL~q~~~~dTfllLskvY~ridQP~~AL~~~~~gld~--fP~~VT~l~g---- 295 (478)
T KOG1129|consen 222 DWWWKQQMGKCYLRLGMPRRAEKQLQSSLTQFPHPDTFLLLSKVYQRIDQPERALLVIGEGLDS--FPFDVTYLLG---- 295 (478)
T ss_pred hHHHHHHHHHHHHHhcChhhhHHHHHHHhhcCCchhHHHHHHHHHHHhccHHHHHHHHhhhhhc--CCchhhhhhh----
Confidence 334446788999999999999998887643 46778899999999999999999999988764 6777776532
Q ss_pred hhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHH
Q 047767 426 SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREA 502 (666)
Q Consensus 426 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a 502 (666)
....+...++.++|.++++...+ .++....++...|.-.++++-|
T Consensus 296 --------------------------------~ARi~eam~~~~~a~~lYk~vlk~~~~nvEaiAcia~~yfY~~~PE~A 343 (478)
T KOG1129|consen 296 --------------------------------QARIHEAMEQQEDALQLYKLVLKLHPINVEAIACIAVGYFYDNNPEMA 343 (478)
T ss_pred --------------------------------hHHHHHHHHhHHHHHHHHHHHHhcCCccceeeeeeeeccccCCChHHH
Confidence 23345566788999999988775 3556666667778888999999
Q ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhC
Q 047767 503 LDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD--RQHYSCMIDMLGRAGILDKAEELLQQT 580 (666)
Q Consensus 503 ~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (666)
+.+++++.+.|+. +...|+.+.-+|.-.+++|-+..-|++.... --.|+ ...|..|.......|++.-|...|+-.
T Consensus 344 lryYRRiLqmG~~-speLf~NigLCC~yaqQ~D~~L~sf~RAlst-at~~~~aaDvWYNlg~vaV~iGD~nlA~rcfrla 421 (478)
T KOG1129|consen 344 LRYYRRILQMGAQ-SPELFCNIGLCCLYAQQIDLVLPSFQRALST-ATQPGQAADVWYNLGFVAVTIGDFNLAKRCFRLA 421 (478)
T ss_pred HHHHHHHHHhcCC-ChHHHhhHHHHHHhhcchhhhHHHHHHHHhh-ccCcchhhhhhhccceeEEeccchHHHHHHHHHH
Confidence 9999999999854 5567888888999999999999999999876 55566 778999999999999999999999976
Q ss_pred C-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 047767 581 P-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627 (666)
Q Consensus 581 ~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 627 (666)
. ..| +...++.|...-.+.|++++|..+++.+....|.-.+...+|+
T Consensus 422 L~~d~~h~ealnNLavL~~r~G~i~~Arsll~~A~s~~P~m~E~~~Nl~ 470 (478)
T KOG1129|consen 422 LTSDAQHGEALNNLAVLAARSGDILGARSLLNAAKSVMPDMAEVTTNLQ 470 (478)
T ss_pred hccCcchHHHHHhHHHHHhhcCchHHHHHHHHHhhhhCcccccccccee
Confidence 5 334 6778999998889999999999999999999998666555554
No 79
>KOG1156 consensus N-terminal acetyltransferase [Chromatin structure and dynamics]
Probab=99.09 E-value=1.6e-06 Score=85.08 Aligned_cols=216 Identities=11% Similarity=0.037 Sum_probs=113.8
Q ss_pred hcCChhHHHHhhccCCCCC---cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHH
Q 047767 157 RMGPSVRALDLFDELPERN---LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQL 233 (666)
Q Consensus 157 ~~g~~~~a~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~ 233 (666)
..+++...++..+.+.+.. ..+.....-.+...|+-++|......-.+.. .-+...|..+--.+....++++|.+.
T Consensus 19 E~kQYkkgLK~~~~iL~k~~eHgeslAmkGL~L~~lg~~~ea~~~vr~glr~d-~~S~vCwHv~gl~~R~dK~Y~eaiKc 97 (700)
T KOG1156|consen 19 ETKQYKKGLKLIKQILKKFPEHGESLAMKGLTLNCLGKKEEAYELVRLGLRND-LKSHVCWHVLGLLQRSDKKYDEAIKC 97 (700)
T ss_pred HHHHHHhHHHHHHHHHHhCCccchhHHhccchhhcccchHHHHHHHHHHhccC-cccchhHHHHHHHHhhhhhHHHHHHH
Confidence 3455555555554444311 1222222233445677777777766554432 12334454444445556778888888
Q ss_pred HHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcC-C
Q 047767 234 HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRMQLCR-K 309 (666)
Q Consensus 234 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~-~ 309 (666)
|..+...+ +.|...+.-+.-.-++.++++.....-.... ......|..++.++.-.|+...|..+++...+.. -
T Consensus 98 y~nAl~~~--~dN~qilrDlslLQ~QmRd~~~~~~tr~~LLql~~~~ra~w~~~Avs~~L~g~y~~A~~il~ef~~t~~~ 175 (700)
T KOG1156|consen 98 YRNALKIE--KDNLQILRDLSLLQIQMRDYEGYLETRNQLLQLRPSQRASWIGFAVAQHLLGEYKMALEILEEFEKTQNT 175 (700)
T ss_pred HHHHHhcC--CCcHHHHHHHHHHHHHHHhhhhHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcc
Confidence 88887775 6777777766666666666655544433322 2345567777777777777777777777776544 2
Q ss_pred CCChhhHHHHHHHH------hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC
Q 047767 310 RPSIRSFVEFLNFA------SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG 377 (666)
Q Consensus 310 ~p~~~t~~~ll~~~------~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 377 (666)
.|+...|......+ ...|..+.|.+.+......-++ ....-..-...+.+.+++++|..++..+..
T Consensus 176 ~~s~~~~e~se~~Ly~n~i~~E~g~~q~ale~L~~~e~~i~D--kla~~e~ka~l~~kl~~lEeA~~~y~~Ll~ 247 (700)
T KOG1156|consen 176 SPSKEDYEHSELLLYQNQILIEAGSLQKALEHLLDNEKQIVD--KLAFEETKADLLMKLGQLEEAVKVYRRLLE 247 (700)
T ss_pred CCCHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHhhhhHHHH--HHHHhhhHHHHHHHHhhHHhHHHHHHHHHh
Confidence 45555554333322 1234434443333333222111 223333444445555555555555555444
No 80
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.09 E-value=2e-06 Score=86.67 Aligned_cols=252 Identities=9% Similarity=0.013 Sum_probs=142.7
Q ss_pred HhHhcCCChhhHHHHhhcCCC--CC-chhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH-c-----
Q 047767 52 DDFVKSGHLNSAKKLFDEMPA--RD-MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS-N----- 122 (666)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~-~----- 122 (666)
..+...|++++|++.++.-.. .| ..........+.+.|+.++|..+|..+++.+ |+...|...+..+. .
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN--Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN--PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhhCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHhhhcccc
Confidence 445778899999888877654 23 4445566777888899999999999888876 45555544444443 2
Q ss_pred CCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChh-HHHHhhccCCCCCc-ccHHHHHHHHHhcCCchHHHHHHH
Q 047767 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV-RALDLFDELPERNL-ATWNLMLRAFCELSRPDEVLRMYN 200 (666)
Q Consensus 123 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~-~a~~~~~~~~~~~~-~~~~~li~~~~~~~~~~~a~~~~~ 200 (666)
..+.+...++++.+.+.- |.......+.-.+..-..+. .+...+..+....+ .+|+.|-..|.......-..+++.
T Consensus 90 ~~~~~~~~~~y~~l~~~y--p~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPslF~~lk~Ly~d~~K~~~i~~l~~ 167 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKY--PRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPSLFSNLKPLYKDPEKAAIIESLVE 167 (517)
T ss_pred cccHHHHHHHHHHHHHhC--ccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCchHHHHHHHHHcChhHHHHHHHHHH
Confidence 224566677777775543 22222222211122111121 12222222222333 344555444443333333344444
Q ss_pred HHHHc----C----------CCCCHh--hHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChH
Q 047767 201 KMKAE----G----------VEPNGL--SFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLI 264 (666)
Q Consensus 201 ~m~~~----~----------~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 264 (666)
..... + -.|+.. ++..+...+...|++++|.+.++..+++. |..+..|..-.+.+-+.|++.
T Consensus 168 ~~~~~l~~~~~~~~~~~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~ht--Pt~~ely~~KarilKh~G~~~ 245 (517)
T PF12569_consen 168 EYVNSLESNGSFSNGDDEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEHT--PTLVELYMTKARILKHAGDLK 245 (517)
T ss_pred HHHHhhcccCCCCCccccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHCCCHH
Confidence 43321 1 123332 33444555667777777777777777764 555667777777777777777
Q ss_pred HHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCC
Q 047767 265 EAKKSFDFIPV---DDVISWNSIVSIYADYDLIFDALELFFRMQLCRK 309 (666)
Q Consensus 265 ~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~ 309 (666)
+|.+.++.... .|...-+-.+..+.+.|++++|.+++......+.
T Consensus 246 ~Aa~~~~~Ar~LD~~DRyiNsK~aKy~LRa~~~e~A~~~~~~Ftr~~~ 293 (517)
T PF12569_consen 246 EAAEAMDEARELDLADRYINSKCAKYLLRAGRIEEAEKTASLFTREDV 293 (517)
T ss_pred HHHHHHHHHHhCChhhHHHHHHHHHHHHHCCCHHHHHHHHHhhcCCCC
Confidence 77776665542 3445555566667777777777777776655543
No 81
>KOG1840 consensus Kinesin light chain [Cytoskeleton]
Probab=99.07 E-value=1.2e-07 Score=94.10 Aligned_cols=201 Identities=14% Similarity=0.156 Sum_probs=146.4
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 047767 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463 (666)
Q Consensus 384 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (666)
+.+...|...+++++|..+|+++..-- +.......+.-..+++.|..+|.
T Consensus 245 ~~~a~~y~~~~k~~eAv~ly~~AL~i~------------------------------e~~~G~~h~~va~~l~nLa~ly~ 294 (508)
T KOG1840|consen 245 NILALVYRSLGKYDEAVNLYEEALTIR------------------------------EEVFGEDHPAVAATLNNLAVLYY 294 (508)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHH------------------------------HHhcCCCCHHHHHHHHHHHHHHh
Confidence 345667888889999999888876420 00000111222345566777889
Q ss_pred hhCCHHHHHHHhccCCC----------CCHH-HHHHHHHHHHHcCChhHHHHHHHHHHHc---CCCCCH----HHHHHHH
Q 047767 464 RCGHIELSHQVFEKIPS----------PNVV-CFTSIMNGYSRNGMGREALDMLEVMIQR---GLIPDK----VTFLCVL 525 (666)
Q Consensus 464 ~~g~~~~A~~~~~~~~~----------~~~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~---g~~p~~----~~~~~l~ 525 (666)
+.|++++|...++...+ |.+. .++.+...++..+++++|..+++...+. -..++. .+++.|.
T Consensus 295 ~~GKf~EA~~~~e~Al~I~~~~~~~~~~~v~~~l~~~~~~~~~~~~~Eea~~l~q~al~i~~~~~g~~~~~~a~~~~nl~ 374 (508)
T KOG1840|consen 295 KQGKFAEAEEYCERALEIYEKLLGASHPEVAAQLSELAAILQSMNEYEEAKKLLQKALKIYLDAPGEDNVNLAKIYANLA 374 (508)
T ss_pred ccCChHHHHHHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHhhccccchHHHHHHHHHH
Confidence 99999888877776542 3332 4566777888999999999999876542 123333 3789999
Q ss_pred HHhcCCCcHHHHHHHHHHhHHhh----C-CCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCC-HHHHH
Q 047767 526 AGCNHSGMVKEGQLVFNSMKSVY----G-IDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP--------GGGD-CMMWS 590 (666)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~-~~~~~ 590 (666)
..|.+.|++++|.++++++.+.. + ..+. ...++.|...|.+.+++.+|.++|.+.. ..|+ ..+|.
T Consensus 375 ~l~~~~gk~~ea~~~~k~ai~~~~~~~~~~~~~~~~~l~~la~~~~~~k~~~~a~~l~~~~~~i~~~~g~~~~~~~~~~~ 454 (508)
T KOG1840|consen 375 ELYLKMGKYKEAEELYKKAIQILRELLGKKDYGVGKPLNQLAEAYEELKKYEEAEQLFEEAKDIMKLCGPDHPDVTYTYL 454 (508)
T ss_pred HHHHHhcchhHHHHHHHHHHHHHHhcccCcChhhhHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHhCCCCCchHHHHH
Confidence 99999999999999999988762 1 1222 5678889999999999999999987643 3333 46899
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHh
Q 047767 591 SLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
.|...|...|+++.|+++.+.+..
T Consensus 455 nL~~~Y~~~g~~e~a~~~~~~~~~ 478 (508)
T KOG1840|consen 455 NLAALYRAQGNYEAAEELEEKVLN 478 (508)
T ss_pred HHHHHHHHcccHHHHHHHHHHHHH
Confidence 999999999999999999998874
No 82
>PF12569 NARP1: NMDA receptor-regulated protein 1 ; InterPro: IPR021183 This group represents N-terminal acetyltransferase A (NatA) auxiliary subunit and represents a non-catalytic component of the NatA N-terminal acetyltransferase, which catalyzes acetylation of proteins beginning with Met-Ser, Met-Gly and Met-Ala. N-terminal acetylation plays a role in normal eukaryotic translation and processing, protect against proteolytic degradation and protein turnover. NAT1 anchors ARD1 and NAT5 to the ribosome and may present the N- terminal of nascent polypeptides for acetylation [], [].
Probab=99.06 E-value=3.2e-07 Score=92.25 Aligned_cols=234 Identities=12% Similarity=0.016 Sum_probs=123.5
Q ss_pred HHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhc----
Q 047767 83 SGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM---- 158 (666)
Q Consensus 83 ~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~---- 158 (666)
..+...|++++|++.++.-... +......+......+.+.|+.++|..++..+++.+ +.|..-|..+..+..-.
T Consensus 12 ~il~e~g~~~~AL~~L~~~~~~-I~Dk~~~~E~rA~ll~kLg~~~eA~~~y~~Li~rN-Pdn~~Yy~~L~~~~g~~~~~~ 89 (517)
T PF12569_consen 12 SILEEAGDYEEALEHLEKNEKQ-ILDKLAVLEKRAELLLKLGRKEEAEKIYRELIDRN-PDNYDYYRGLEEALGLQLQLS 89 (517)
T ss_pred HHHHHCCCHHHHHHHHHhhhhh-CCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHhhhcccc
Confidence 4567889999999999875543 44345556677888899999999999999999986 34444455555554222
Q ss_pred -CChhHHHHhhccCCC--CCcccHHHHHHHHHhcCCch-HHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHH
Q 047767 159 -GPSVRALDLFDELPE--RNLATWNLMLRAFCELSRPD-EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234 (666)
Q Consensus 159 -g~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~-~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 234 (666)
.+.+...++|+++.. |...+...+.-.+.....+. .+...+..+...||++ +|+.+-..|...........++
T Consensus 90 ~~~~~~~~~~y~~l~~~yp~s~~~~rl~L~~~~g~~F~~~~~~yl~~~l~KgvPs---lF~~lk~Ly~d~~K~~~i~~l~ 166 (517)
T PF12569_consen 90 DEDVEKLLELYDELAEKYPRSDAPRRLPLDFLEGDEFKERLDEYLRPQLRKGVPS---LFSNLKPLYKDPEKAAIIESLV 166 (517)
T ss_pred cccHHHHHHHHHHHHHhCccccchhHhhcccCCHHHHHHHHHHHHHHHHhcCCch---HHHHHHHHHcChhHHHHHHHHH
Confidence 245666666666644 32222222222222222232 3444556666667644 3444444444333333333333
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCCh--hhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCC
Q 047767 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDV--ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPS 312 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~--~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~ 312 (666)
....... ...+.+.... -..-..|.. .++..+...|...|++++|++++++.++. .|+
T Consensus 167 ~~~~~~l----------------~~~~~~~~~~--~~~~~~p~~~lw~~~~lAqhyd~~g~~~~Al~~Id~aI~h--tPt 226 (517)
T PF12569_consen 167 EEYVNSL----------------ESNGSFSNGD--DEEKEPPSTLLWTLYFLAQHYDYLGDYEKALEYIDKAIEH--TPT 226 (517)
T ss_pred HHHHHhh----------------cccCCCCCcc--ccccCCchHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCC
Confidence 3332221 0000000000 000012233 34456677778888888888888887764 344
Q ss_pred -hhhHHHHHHHHhccCChhhHHHHHHHHHH
Q 047767 313 -IRSFVEFLNFASRTGNVYFGKQIHGYVTK 341 (666)
Q Consensus 313 -~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (666)
+..|..-...+-+.|++.+|...++.+..
T Consensus 227 ~~ely~~KarilKh~G~~~~Aa~~~~~Ar~ 256 (517)
T PF12569_consen 227 LVELYMTKARILKHAGDLKEAAEAMDEARE 256 (517)
T ss_pred cHHHHHHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 22333333444444444444444444444
No 83
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=99.06 E-value=1.7e-06 Score=85.73 Aligned_cols=358 Identities=14% Similarity=0.119 Sum_probs=180.5
Q ss_pred CChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHH
Q 047767 159 GPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVI 238 (666)
Q Consensus 159 g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 238 (666)
.++.+|+.+|-+-. .-...|..|....+|++|+.+-+. .|.+.-...-.+.++++...|+-++|-++-
T Consensus 545 kkfk~ae~ifleqn-----~te~aigmy~~lhkwde~i~lae~---~~~p~~eklk~sy~q~l~dt~qd~ka~elk---- 612 (1636)
T KOG3616|consen 545 KKFKEAEMIFLEQN-----ATEEAIGMYQELHKWDEAIALAEA---KGHPALEKLKRSYLQALMDTGQDEKAAELK---- 612 (1636)
T ss_pred hhhhHHHHHHHhcc-----cHHHHHHHHHHHHhHHHHHHHHHh---cCChHHHHHHHHHHHHHHhcCchhhhhhhc----
Confidence 45566665553211 112334445555566666554321 222222222233344444555544443321
Q ss_pred HhCCCCchHHHHHHHHHHHHccCChHHHHHHhccC--CCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhH
Q 047767 239 KLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFI--PVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF 316 (666)
Q Consensus 239 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~--~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~ 316 (666)
.+..--.+-|..|.+.|...+|.+....- ...|......+..++.+..-+++|-++|+++.. +
T Consensus 613 ------~sdgd~laaiqlyika~~p~~a~~~a~n~~~l~~de~il~~ia~alik~elydkagdlfeki~d---------~ 677 (1636)
T KOG3616|consen 613 ------ESDGDGLAAIQLYIKAGKPAKAARAALNDEELLADEEILEHIAAALIKGELYDKAGDLFEKIHD---------F 677 (1636)
T ss_pred ------cccCccHHHHHHHHHcCCchHHHHhhcCHHHhhccHHHHHHHHHHHHhhHHHHhhhhHHHHhhC---------H
Confidence 11111234567777888777766544221 123445555555666666666666666666532 1
Q ss_pred HHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCCh
Q 047767 317 VEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNI 396 (666)
Q Consensus 317 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~ 396 (666)
...+.++.+..-+-+|.++-+. .++..-+..-......+...|+++.|...|-+... .-..+.+.....++
T Consensus 678 dkale~fkkgdaf~kaielarf----afp~evv~lee~wg~hl~~~~q~daainhfiea~~-----~~kaieaai~akew 748 (1636)
T KOG3616|consen 678 DKALECFKKGDAFGKAIELARF----AFPEEVVKLEEAWGDHLEQIGQLDAAINHFIEANC-----LIKAIEAAIGAKEW 748 (1636)
T ss_pred HHHHHHHHcccHHHHHHHHHHh----hCcHHHhhHHHHHhHHHHHHHhHHHHHHHHHHhhh-----HHHHHHHHhhhhhh
Confidence 2223333332223333332221 11111122223344455556777777766644321 12234556667788
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhc
Q 047767 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476 (666)
Q Consensus 397 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (666)
.+|+.+++.++++... ..-|..+-.. ++..++++.|.++|-. ...++.-|.+|.+.|+|+.|.++-.
T Consensus 749 ~kai~ildniqdqk~~--s~yy~~iadh--yan~~dfe~ae~lf~e---------~~~~~dai~my~k~~kw~da~kla~ 815 (1636)
T KOG3616|consen 749 KKAISILDNIQDQKTA--SGYYGEIADH--YANKGDFEIAEELFTE---------ADLFKDAIDMYGKAGKWEDAFKLAE 815 (1636)
T ss_pred hhhHhHHHHhhhhccc--cccchHHHHH--hccchhHHHHHHHHHh---------cchhHHHHHHHhccccHHHHHHHHH
Confidence 8888888888765322 2233334444 5666666666666532 2234455666777777777777666
Q ss_pred cCCCCC--HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-
Q 047767 477 KIPSPN--VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD- 553 (666)
Q Consensus 477 ~~~~~~--~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~- 553 (666)
+...|. +..|-+-..-+-.+|++.+|.+++-.+. .|+. .|..|-+.|..+..+++.++- .|+
T Consensus 816 e~~~~e~t~~~yiakaedldehgkf~eaeqlyiti~----~p~~-----aiqmydk~~~~ddmirlv~k~------h~d~ 880 (1636)
T KOG3616|consen 816 ECHGPEATISLYIAKAEDLDEHGKFAEAEQLYITIG----EPDK-----AIQMYDKHGLDDDMIRLVEKH------HGDH 880 (1636)
T ss_pred HhcCchhHHHHHHHhHHhHHhhcchhhhhheeEEcc----CchH-----HHHHHHhhCcchHHHHHHHHh------Chhh
Confidence 665443 3344444444556666666666653321 3442 234556666666666655433 222
Q ss_pred -chHHHHHHHHHHhcCChHHHHHHHHhC
Q 047767 554 -RQHYSCMIDMLGRAGILDKAEELLQQT 580 (666)
Q Consensus 554 -~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (666)
..+...+..-|...|++.+|.+-|-+.
T Consensus 881 l~dt~~~f~~e~e~~g~lkaae~~flea 908 (1636)
T KOG3616|consen 881 LHDTHKHFAKELEAEGDLKAAEEHFLEA 908 (1636)
T ss_pred hhHHHHHHHHHHHhccChhHHHHHHHhh
Confidence 445555666666777777776665443
No 84
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=99.04 E-value=5.4e-06 Score=83.47 Aligned_cols=372 Identities=14% Similarity=0.126 Sum_probs=185.1
Q ss_pred HhcCCChhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhC-C-------CCCCcccHHHHHHHHHcCCC
Q 047767 54 FVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSH-G-------IKESASTFSSVLSVCSNAGF 125 (666)
Q Consensus 54 ~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~-~-------~~~~~~~~~~ll~~~~~~~~ 125 (666)
|.--|+.+.|.+-.+-+.. ...|..|.+-|.+.++.+-|.-.+-.|... | .+-+..+=..+.-.....|.
T Consensus 738 yvtiG~MD~AfksI~~IkS--~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~q~~~e~eakvAvLAieLgM 815 (1416)
T KOG3617|consen 738 YVTIGSMDAAFKSIQFIKS--DSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQQNGEEDEAKVAVLAIELGM 815 (1416)
T ss_pred EEEeccHHHHHHHHHHHhh--hHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHHhCCcchhhHHHHHHHHHhh
Confidence 4445555655544444432 334666666666665555555555554321 1 01011111222222334566
Q ss_pred hHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCC-cccHHHHHHHHHhcCCchHHHHHHHHH--
Q 047767 126 YTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERN-LATWNLMLRAFCELSRPDEVLRMYNKM-- 202 (666)
Q Consensus 126 ~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m-- 202 (666)
+++|+.++.+..+.+ .|-..|-..|.+++|.++-+.-..-. ..||..-...+-..+|.+.|++.|++-
T Consensus 816 lEeA~~lYr~ckR~D---------LlNKlyQs~g~w~eA~eiAE~~DRiHLr~Tyy~yA~~Lear~Di~~AleyyEK~~~ 886 (1416)
T KOG3617|consen 816 LEEALILYRQCKRYD---------LLNKLYQSQGMWSEAFEIAETKDRIHLRNTYYNYAKYLEARRDIEAALEYYEKAGV 886 (1416)
T ss_pred HHHHHHHHHHHHHHH---------HHHHHHHhcccHHHHHHHHhhccceehhhhHHHHHHHHHhhccHHHHHHHHHhcCC
Confidence 666666666655432 23344555566666665554432211 123333333333445555555554431
Q ss_pred --------HHcC---------CCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHH
Q 047767 203 --------KAEG---------VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265 (666)
Q Consensus 203 --------~~~~---------~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 265 (666)
.... -+-|...|...-.-+-..|+.+.|..+|..... |-++++..|-.|+.++
T Consensus 887 hafev~rmL~e~p~~~e~Yv~~~~d~~L~~WWgqYlES~GemdaAl~~Y~~A~D----------~fs~VrI~C~qGk~~k 956 (1416)
T KOG3617|consen 887 HAFEVFRMLKEYPKQIEQYVRRKRDESLYSWWGQYLESVGEMDAALSFYSSAKD----------YFSMVRIKCIQGKTDK 956 (1416)
T ss_pred hHHHHHHHHHhChHHHHHHHHhccchHHHHHHHHHHhcccchHHHHHHHHHhhh----------hhhheeeEeeccCchH
Confidence 1110 012333444444445566777777777765543 3456666777788888
Q ss_pred HHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCC---------------hh
Q 047767 266 AKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGN---------------VY 330 (666)
Q Consensus 266 A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~---------------~~ 330 (666)
|-++-++-. |......+.+.|-..|++.+|..+|.+.. +|...|+.|-..+- .-
T Consensus 957 Aa~iA~esg--d~AAcYhlaR~YEn~g~v~~Av~FfTrAq---------afsnAIRlcKEnd~~d~L~nlal~s~~~d~v 1025 (1416)
T KOG3617|consen 957 AARIAEESG--DKAACYHLARMYENDGDVVKAVKFFTRAQ---------AFSNAIRLCKENDMKDRLANLALMSGGSDLV 1025 (1416)
T ss_pred HHHHHHhcc--cHHHHHHHHHHhhhhHHHHHHHHHHHHHH---------HHHHHHHHHHhcCHHHHHHHHHhhcCchhHH
Confidence 877766544 66666677888888888888888887754 23333333322221 11
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC--------------CCCcccHHHHHHHHHhcCCh
Q 047767 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP--------------GRSLECCNSLMTSLLHSGNI 396 (666)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~--------------~~~~~~~~~li~~~~~~~~~ 396 (666)
.|.+.++ +.|. ....-+..|-+.|.+.+|+++-=+-. ..|+...+.-..-++...++
T Consensus 1026 ~aArYyE---e~g~------~~~~AVmLYHkAGm~~kALelAF~tqQf~aL~lIa~DLd~~sDp~ll~RcadFF~~~~qy 1096 (1416)
T KOG3617|consen 1026 SAARYYE---ELGG------YAHKAVMLYHKAGMIGKALELAFRTQQFSALDLIAKDLDAGSDPKLLRRCADFFENNQQY 1096 (1416)
T ss_pred HHHHHHH---Hcch------hhhHHHHHHHhhcchHHHHHHHHhhcccHHHHHHHHhcCCCCCHHHHHHHHHHHHhHHHH
Confidence 1111121 1111 12234456677777777766421111 12555556666677788888
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhC-CCCc----hHHHHHHHHHHHhhCCHHHH
Q 047767 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSG-FESN----IAVSCSLMDAYSRCGHIELS 471 (666)
Q Consensus 397 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~----~~~~~~l~~~~~~~g~~~~A 471 (666)
++|..++-..++ |...+.- |. ..+..-..++-+.|.... -.|+ ..+...+.+.|.+.|.+..|
T Consensus 1097 ekAV~lL~~ar~---------~~~Alql--C~-~~nv~vtee~aE~mTp~Kd~~~~e~~R~~vLeqvae~c~qQG~Yh~A 1164 (1416)
T KOG3617|consen 1097 EKAVNLLCLARE---------FSGALQL--CK-NRNVRVTEEFAELMTPTKDDMPNEQERKQVLEQVAELCLQQGAYHAA 1164 (1416)
T ss_pred HHHHHHHHHHHH---------HHHHHHH--Hh-cCCCchhHHHHHhcCcCcCCCccHHHHHHHHHHHHHHHHhccchHHH
Confidence 888887755543 1111221 22 222222233333332111 1122 23444556677777777777
Q ss_pred HHHhccC
Q 047767 472 HQVFEKI 478 (666)
Q Consensus 472 ~~~~~~~ 478 (666)
-+-|.+.
T Consensus 1165 tKKfTQA 1171 (1416)
T KOG3617|consen 1165 TKKFTQA 1171 (1416)
T ss_pred HHHHhhh
Confidence 6666544
No 85
>PRK11189 lipoprotein NlpI; Provisional
Probab=99.00 E-value=2.2e-07 Score=88.50 Aligned_cols=199 Identities=11% Similarity=-0.007 Sum_probs=133.4
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--C-CHHHHHHHHHHHHHcCChhHHH
Q 047767 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--P-NVVCFTSIMNGYSRNGMGREAL 503 (666)
Q Consensus 427 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~ 503 (666)
....|+.+.|...+....+.. +.+...|+.+...+...|++++|...|+...+ | +...|..+..++...|++++|+
T Consensus 74 ~~~~g~~~~A~~~~~~Al~l~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~Al~l~P~~~~a~~~lg~~l~~~g~~~eA~ 152 (296)
T PRK11189 74 YDSLGLRALARNDFSQALALR-PDMADAYNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAYLNRGIALYYGGRYELAQ 152 (296)
T ss_pred HHHCCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHH
Confidence 344455555555544444433 33566778888899999999999999998864 4 4678888888999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHH--HHHHHh-C
Q 047767 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA--EELLQQ-T 580 (666)
Q Consensus 504 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A--~~~~~~-~ 580 (666)
+.+++..+ ..|+..........+...++.++|...+++.... ..|+...+ .+.. ...|+..++ .+.+.+ .
T Consensus 153 ~~~~~al~--~~P~~~~~~~~~~l~~~~~~~~~A~~~l~~~~~~--~~~~~~~~-~~~~--~~lg~~~~~~~~~~~~~~~ 225 (296)
T PRK11189 153 DDLLAFYQ--DDPNDPYRALWLYLAESKLDPKQAKENLKQRYEK--LDKEQWGW-NIVE--FYLGKISEETLMERLKAGA 225 (296)
T ss_pred HHHHHHHH--hCCCCHHHHHHHHHHHccCCHHHHHHHHHHHHhh--CCccccHH-HHHH--HHccCCCHHHHHHHHHhcC
Confidence 99999998 5676542222223344567899999999776543 34443322 3333 345555433 333332 2
Q ss_pred CCCC-----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC-cchHHHHHHHHhhc
Q 047767 581 PGGG-----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD-FAVYSQVSNFYSEI 633 (666)
Q Consensus 581 ~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~ 633 (666)
...+ ....|..++..+...|++++|+..|+++++.+|++ ......++......
T Consensus 226 ~~~~~l~~~~~ea~~~Lg~~~~~~g~~~~A~~~~~~Al~~~~~~~~e~~~~~~e~~~~~ 284 (296)
T PRK11189 226 TDNTELAERLCETYFYLAKYYLSLGDLDEAAALFKLALANNVYNFVEHRYALLELALLG 284 (296)
T ss_pred CCcHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHH
Confidence 2122 34578899999999999999999999999999755 33344455554443
No 86
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.00 E-value=9.5e-07 Score=78.05 Aligned_cols=401 Identities=14% Similarity=0.078 Sum_probs=211.0
Q ss_pred cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCC--CChhhHHH-HHHHHHcCCChHHHHHH
Q 047767 224 GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DDVISWNS-IVSIYADYDLIFDALEL 300 (666)
Q Consensus 224 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~-li~~~~~~g~~~~a~~~ 300 (666)
..+++.+.+++..-.+.. +.+....+.|..+|.+..++..|-..++++.. |...-|.. -.+.+-+.+.+.+|+++
T Consensus 23 d~ry~DaI~~l~s~~Er~--p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrlY~AQSLY~A~i~ADALrV 100 (459)
T KOG4340|consen 23 DARYADAIQLLGSELERS--PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRLYQAQSLYKACIYADALRV 100 (459)
T ss_pred HhhHHHHHHHHHHHHhcC--ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 333444444433333332 33444555555555566666666555555432 22222211 13445566777777777
Q ss_pred HHHhHhcCCCCChhhHHHHHHHH--hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC
Q 047767 301 FFRMQLCRKRPSIRSFVEFLNFA--SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR 378 (666)
Q Consensus 301 ~~~m~~~~~~p~~~t~~~ll~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 378 (666)
...|.+. |+...-..-+.+. -..+++..+..+.+.....| +..+.........+.|+.+.|.+-|+...+-
T Consensus 101 ~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~en----~Ad~~in~gCllykegqyEaAvqkFqaAlqv 173 (459)
T KOG4340|consen 101 AFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSEN----EADGQINLGCLLYKEGQYEAAVQKFQAALQV 173 (459)
T ss_pred HHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCCC----ccchhccchheeeccccHHHHHHHHHHHHhh
Confidence 7777542 2222211222222 23455555555554443222 4455555666666777777777777765542
Q ss_pred ----CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHH-HHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchH
Q 047767 379 ----SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVT-LSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453 (666)
Q Consensus 379 ----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~-~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 453 (666)
....||..+ +..+.++++.|++...+++++|++--+.. ......+. ....+..-..++... -+.
T Consensus 174 sGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegi---DvrsvgNt~~lh~Sa-------l~e 242 (459)
T KOG4340|consen 174 SGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGI---DVRSVGNTLVLHQSA-------LVE 242 (459)
T ss_pred cCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccC---chhcccchHHHHHHH-------HHH
Confidence 223444433 34456677777777777777775422110 00000000 000000000011000 012
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhccCCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHH
Q 047767 454 VSCSLMDAYSRCGHIELSHQVFEKIPS-----PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAG 527 (666)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~ 527 (666)
.+|.-.-.+.+.++++.|.+.+..|+. .|++|...+.-. -..+++.+..+-++-+.. +.| ...||..++-.
T Consensus 243 AfNLKaAIeyq~~n~eAA~eaLtDmPPRaE~elDPvTLHN~Al~-n~~~~p~~g~~KLqFLL~--~nPfP~ETFANlLll 319 (459)
T KOG4340|consen 243 AFNLKAAIEYQLRNYEAAQEALTDMPPRAEEELDPVTLHNQALM-NMDARPTEGFEKLQFLLQ--QNPFPPETFANLLLL 319 (459)
T ss_pred HhhhhhhhhhhcccHHHHHHHhhcCCCcccccCCchhhhHHHHh-cccCCccccHHHHHHHHh--cCCCChHHHHHHHHH
Confidence 233333446688999999999999984 577776655432 224567777776766666 344 44599999999
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHH-hcCChHHHHHHHHhCCCCCCHHHHHHHHHH--HHhhCC---
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG-RAGILDKAEELLQQTPGGGDCMMWSSLLRS--CRVHGN--- 601 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~~~~~--- 601 (666)
|++..-++.|..++.+=....-.-.+...|+ |++++. ..-..++|.+-++.+...-........+.. -...++
T Consensus 320 yCKNeyf~lAADvLAEn~~lTyk~L~~Yly~-LLdaLIt~qT~pEea~KKL~~La~~l~~kLRklAi~vQe~r~~~dd~a 398 (459)
T KOG4340|consen 320 YCKNEYFDLAADVLAENAHLTYKFLTPYLYD-LLDALITCQTAPEEAFKKLDGLAGMLTEKLRKLAIQVQEARHNRDDEA 398 (459)
T ss_pred HhhhHHHhHHHHHHhhCcchhHHHhhHHHHH-HHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHH
Confidence 9999888888887754322100012233444 334443 445677777766654411111111112222 112222
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 602 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
...+++-|++.+++.- .+...-++.|++..++.-+.+.|+.-.+..-
T Consensus 399 ~R~ai~~Yd~~LE~YL---PVlMa~AkiyW~~~Dy~~vEk~Fr~SvefC~ 445 (459)
T KOG4340|consen 399 IRKAVNEYDETLEKYL---PVLMAQAKIYWNLEDYPMVEKIFRKSVEFCN 445 (459)
T ss_pred HHHHHHHHHHHHHHHH---HHHHHHHHhhccccccHHHHHHHHHHHhhhc
Confidence 2335566666676553 2677889999999999999999987765443
No 87
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=99.00 E-value=3.7e-07 Score=82.23 Aligned_cols=163 Identities=9% Similarity=-0.009 Sum_probs=77.3
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHH---HH--
Q 047767 454 VSCSLMDAYSRCGHIELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFL---CV-- 524 (666)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~---~l-- 524 (666)
.+..-..+|...|++..|+.-++... ..+...+--+-..+...|+.+.++...++-.+ +.||.. +|. .+
T Consensus 191 l~~~Rakc~i~~~e~k~AI~Dlk~askLs~DnTe~~ykis~L~Y~vgd~~~sL~~iRECLK--ldpdHK~Cf~~YKklkK 268 (504)
T KOG0624|consen 191 LRQARAKCYIAEGEPKKAIHDLKQASKLSQDNTEGHYKISQLLYTVGDAENSLKEIRECLK--LDPDHKLCFPFYKKLKK 268 (504)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHhccccchHHHHHHHHHHHhhhhHHHHHHHHHHHHc--cCcchhhHHHHHHHHHH
Confidence 33334445555566665555444333 23444444444455555666666666655555 555543 111 11
Q ss_pred -------HHHhcCCCcHHHHHHHHHHhHHhhCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 047767 525 -------LAGCNHSGMVKEGQLVFNSMKSVYGIDAD-----RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWS 590 (666)
Q Consensus 525 -------~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 590 (666)
+......++|.++.+-.+...+. .|. ...+..+..++...|++-+|+....++. ..| |+.++.
T Consensus 269 v~K~les~e~~ie~~~~t~cle~ge~vlk~---ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL~~d~~dv~~l~ 345 (504)
T KOG0624|consen 269 VVKSLESAEQAIEEKHWTECLEAGEKVLKN---EPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVLDIDPDDVQVLC 345 (504)
T ss_pred HHHHHHHHHHHHhhhhHHHHHHHHHHHHhc---CCcccceeeeeeheeeecccccCCHHHHHHHHHHHHhcCchHHHHHH
Confidence 01122334444444444444432 233 1223334445555555555555555443 333 344555
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
.-..+|.-...++.|+.-|+++.+.+|+|..
T Consensus 346 dRAeA~l~dE~YD~AI~dye~A~e~n~sn~~ 376 (504)
T KOG0624|consen 346 DRAEAYLGDEMYDDAIHDYEKALELNESNTR 376 (504)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHHhcCcccHH
Confidence 5555555555555555555555555555543
No 88
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=99.00 E-value=5.3e-08 Score=90.98 Aligned_cols=154 Identities=14% Similarity=0.090 Sum_probs=113.5
Q ss_pred HHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh----cCCCcHH
Q 047767 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC----NHSGMVK 535 (666)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~----~~~g~~~ 535 (666)
..+...|++++|.+++... .+.......+..|.+.++++.|.+.++.|.+ +..|.. ...+..++ .-...+.
T Consensus 110 ~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~--~~eD~~-l~qLa~awv~l~~g~e~~~ 184 (290)
T PF04733_consen 110 TILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQ--IDEDSI-LTQLAEAWVNLATGGEKYQ 184 (290)
T ss_dssp HHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHC--CSCCHH-HHHHHHHHHHHHHTTTCCC
T ss_pred HHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCcHH-HHHHHHHHHHHHhCchhHH
Confidence 4566789999998888876 5667777788899999999999999999987 555554 33344433 2234689
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCh-HHHHHHHHHH
Q 047767 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNE-IIGRRVANIL 612 (666)
Q Consensus 536 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~ 612 (666)
+|.-+|+++.+. ..+++.+.+.++.++...|++++|.+++++.. ..| +..++..++......|+. +.+.+.++++
T Consensus 185 ~A~y~f~El~~~--~~~t~~~lng~A~~~l~~~~~~eAe~~L~~al~~~~~~~d~LaNliv~~~~~gk~~~~~~~~l~qL 262 (290)
T PF04733_consen 185 DAFYIFEELSDK--FGSTPKLLNGLAVCHLQLGHYEEAEELLEEALEKDPNDPDTLANLIVCSLHLGKPTEAAERYLSQL 262 (290)
T ss_dssp HHHHHHHHHHCC--S--SHHHHHHHHHHHHHCT-HHHHHHHHHHHCCC-CCHHHHHHHHHHHHHHTT-TCHHHHHHHHHC
T ss_pred HHHHHHHHHHhc--cCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 999999998764 45778888999999999999999999988754 344 666777777777777776 6677888888
Q ss_pred HhcCCCCc
Q 047767 613 MELEPVDF 620 (666)
Q Consensus 613 ~~~~p~~~ 620 (666)
....|+.+
T Consensus 263 ~~~~p~h~ 270 (290)
T PF04733_consen 263 KQSNPNHP 270 (290)
T ss_dssp HHHTTTSH
T ss_pred HHhCCCCh
Confidence 88888865
No 89
>KOG1174 consensus Anaphase-promoting complex (APC), subunit 7 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.9e-06 Score=79.78 Aligned_cols=297 Identities=10% Similarity=0.009 Sum_probs=176.8
Q ss_pred CCCCHhhHHHHHHHhc--ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHH
Q 047767 207 VEPNGLSFCYMVRGCS--IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSI 284 (666)
Q Consensus 207 ~~p~~~t~~~ll~~~~--~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~l 284 (666)
+.|...+....+++++ ..++-..+..++-.+.....++.|+.....+..++...|+.++|...|+....-|+.+...|
T Consensus 190 ~~~~~dwls~wika~Aq~~~~~hs~a~~t~l~le~~~~lr~NvhLl~~lak~~~~~Gdn~~a~~~Fe~~~~~dpy~i~~M 269 (564)
T KOG1174|consen 190 VPDHFDWLSKWIKALAQMFNFKHSDASQTFLMLHDNTTLRCNEHLMMALGKCLYYNGDYFQAEDIFSSTLCANPDNVEAM 269 (564)
T ss_pred cCCCccHHHHHHHHHHHHHhcccchhhhHHHHHHhhccCCccHHHHHHHhhhhhhhcCchHHHHHHHHHhhCChhhhhhH
Confidence 3444445555555533 33444444444444444433789999999999999999999999999998775444433322
Q ss_pred ---HHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh
Q 047767 285 ---VSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK 361 (666)
Q Consensus 285 ---i~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 361 (666)
...+.+.|+.++...+...+....- -+...+..-+..+-...+++.|..+-+..++.. +.+...+-.-..++..
T Consensus 270 D~Ya~LL~~eg~~e~~~~L~~~Lf~~~~-~ta~~wfV~~~~l~~~K~~~rAL~~~eK~I~~~--~r~~~alilKG~lL~~ 346 (564)
T KOG1174|consen 270 DLYAVLLGQEGGCEQDSALMDYLFAKVK-YTASHWFVHAQLLYDEKKFERALNFVEKCIDSE--PRNHEALILKGRLLIA 346 (564)
T ss_pred HHHHHHHHhccCHhhHHHHHHHHHhhhh-cchhhhhhhhhhhhhhhhHHHHHHHHHHHhccC--cccchHHHhccHHHHh
Confidence 3345678888888888877754321 111112111222233556666666666665543 3366666666778888
Q ss_pred cCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhch-hhhhcccchhhHH
Q 047767 362 CNVIESSVAVFESAPG---RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA-LSVSASANLGSCR 437 (666)
Q Consensus 362 ~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~-~~~~~~~~~~~a~ 437 (666)
.|+.++|.-.|+.... -+..+|..++.+|...|.+.+|.-+-+..... ...+..+.+ ++.+ .+......-
T Consensus 347 ~~R~~~A~IaFR~Aq~Lap~rL~~Y~GL~hsYLA~~~~kEA~~~An~~~~~-~~~sA~~Lt-L~g~~V~~~dp~~r---- 420 (564)
T KOG1174|consen 347 LERHTQAVIAFRTAQMLAPYRLEIYRGLFHSYLAQKRFKEANALANWTIRL-FQNSARSLT-LFGTLVLFPDPRMR---- 420 (564)
T ss_pred ccchHHHHHHHHHHHhcchhhHHHHHHHHHHHHhhchHHHHHHHHHHHHHH-hhcchhhhh-hhcceeeccCchhH----
Confidence 9999999988887543 26778999999999999999988776655432 122233322 2211 001111222
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 047767 438 LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGL 514 (666)
Q Consensus 438 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 514 (666)
++|..+++...+ |+ ....+.+...+...|+.++++.+++.... .
T Consensus 421 -------------------------------EKAKkf~ek~L~~~P~Y~~AV~~~AEL~~~Eg~~~D~i~LLe~~L~--~ 467 (564)
T KOG1174|consen 421 -------------------------------EKAKKFAEKSLKINPIYTPAVNLIAELCQVEGPTKDIIKLLEKHLI--I 467 (564)
T ss_pred -------------------------------HHHHHHHHhhhccCCccHHHHHHHHHHHHhhCccchHHHHHHHHHh--h
Confidence 444555544432 32 23344445555556666666666666555 4
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHHHHhH
Q 047767 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMK 545 (666)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 545 (666)
.||....+.|.+.+...+.+.+|...|....
T Consensus 468 ~~D~~LH~~Lgd~~~A~Ne~Q~am~~y~~AL 498 (564)
T KOG1174|consen 468 FPDVNLHNHLGDIMRAQNEPQKAMEYYYKAL 498 (564)
T ss_pred ccccHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 5666666666666666666666666666555
No 90
>KOG4162 consensus Predicted calmodulin-binding protein [Signal transduction mechanisms]
Probab=98.97 E-value=2.2e-06 Score=85.91 Aligned_cols=448 Identities=13% Similarity=0.058 Sum_probs=249.2
Q ss_pred CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCC---CCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCC-CCCcccH
Q 047767 38 PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA---RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGI-KESASTF 113 (666)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~ 113 (666)
..+..+...|..+.-++.+.|+++.+.+.|++... .....|+.+-..+.-.|.-..|..+++.-....- ++++..+
T Consensus 317 ~~~qnd~ai~d~Lt~al~~~g~f~~lae~fE~~~~~~~~~~e~w~~~als~saag~~s~Av~ll~~~~~~~~~ps~~s~~ 396 (799)
T KOG4162|consen 317 KKFQNDAAIFDHLTFALSRCGQFEVLAEQFEQALPFSFGEHERWYQLALSYSAAGSDSKAVNLLRESLKKSEQPSDISVL 396 (799)
T ss_pred hhhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHhccchHHHHHHHhhcccccCCCcchHH
Confidence 45556777777777777788888888888877653 3444677777777777777777777776544321 2234444
Q ss_pred HHHHHHHHc-CCChHHHHHHHHHHHHhc--C--CCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHh
Q 047767 114 SSVLSVCSN-AGFYTEGIQIHCRVLSLG--F--GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCE 188 (666)
Q Consensus 114 ~~ll~~~~~-~~~~~~a~~~~~~~~~~~--~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 188 (666)
...-+.|.. .+.++++..+-.+..... . ...+..|..+.-+|...-. +.+..+ -+
T Consensus 397 Lmasklc~e~l~~~eegldYA~kai~~~~~~~~~l~~~~~l~lGi~y~~~A~------------~a~~~s--------eR 456 (799)
T KOG4162|consen 397 LMASKLCIERLKLVEEGLDYAQKAISLLGGQRSHLKPRGYLFLGIAYGFQAR------------QANLKS--------ER 456 (799)
T ss_pred HHHHHHHHhchhhhhhHHHHHHHHHHHhhhhhhhhhhhHHHHHHHHHHhHhh------------cCCChH--------HH
Confidence 444455543 456666666555555411 0 1111222222222221000 000000 01
Q ss_pred cCCchHHHHHHHHHHHcC-CCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHH
Q 047767 189 LSRPDEVLRMYNKMKAEG-VEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267 (666)
Q Consensus 189 ~~~~~~a~~~~~~m~~~~-~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 267 (666)
.....++++.+++..+.+ -.|+...|.. --++..++++.|....++..+.+ -..+...|..|.-.+...+++.+|+
T Consensus 457 ~~~h~kslqale~av~~d~~dp~~if~la--lq~A~~R~l~sAl~~~~eaL~l~-~~~~~~~whLLALvlSa~kr~~~Al 533 (799)
T KOG4162|consen 457 DALHKKSLQALEEAVQFDPTDPLVIFYLA--LQYAEQRQLTSALDYAREALALN-RGDSAKAWHLLALVLSAQKRLKEAL 533 (799)
T ss_pred HHHHHHHHHHHHHHHhcCCCCchHHHHHH--HHHHHHHhHHHHHHHHHHHHHhc-CCccHHHHHHHHHHHhhhhhhHHHH
Confidence 112245566666665542 3343333322 23556677777777777777775 4667777777777777778887777
Q ss_pred HHhccCCCC---ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCC
Q 047767 268 KSFDFIPVD---DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGF 344 (666)
Q Consensus 268 ~~~~~~~~~---~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 344 (666)
.+.+..... |......-+..-..-++.++++.....+..-- -..- .+....++
T Consensus 534 ~vvd~al~E~~~N~~l~~~~~~i~~~~~~~e~~l~t~~~~L~~w---------------e~~~---~~q~~~~~------ 589 (799)
T KOG4162|consen 534 DVVDAALEEFGDNHVLMDGKIHIELTFNDREEALDTCIHKLALW---------------EAEY---GVQQTLDE------ 589 (799)
T ss_pred HHHHHHHHHhhhhhhhchhhhhhhhhcccHHHHHHHHHHHHHHH---------------Hhhh---hHhhhhhh------
Confidence 776544311 11111111222334677888887777665310 0000 00000000
Q ss_pred CCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhch
Q 047767 345 DHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424 (666)
Q Consensus 345 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 424 (666)
....+....+.- ..++..++....+.+ ..-
T Consensus 590 ---------------------g~~~~lk~~l~l--------------a~~q~~~a~s~sr~l---------------s~l 619 (799)
T KOG4162|consen 590 ---------------------GKLLRLKAGLHL--------------ALSQPTDAISTSRYL---------------SSL 619 (799)
T ss_pred ---------------------hhhhhhhccccc--------------CcccccccchhhHHH---------------HHH
Confidence 000000000000 000111111111111 000
Q ss_pred hhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCC------HHHHHHHHHHHHHcCC
Q 047767 425 LSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN------VVCFTSIMNGYSRNGM 498 (666)
Q Consensus 425 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~------~~~~~~li~~~~~~~~ 498 (666)
+..-.+.-..+.....+.....|+ ...|......+.+.+.
T Consensus 620 ----------------------------------~a~~~~~~~se~~Lp~s~~~~~~~~~~~~~~~lwllaa~~~~~~~~ 665 (799)
T KOG4162|consen 620 ----------------------------------VASQLKSAGSELKLPSSTVLPGPDSLWYLLQKLWLLAADLFLLSGN 665 (799)
T ss_pred ----------------------------------HHhhhhhcccccccCcccccCCCCchHHHHHHHHHHHHHHHHhcCC
Confidence 000000000000001111111111 2345566677888888
Q ss_pred hhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHH-
Q 047767 499 GREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEE- 575 (666)
Q Consensus 499 ~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~- 575 (666)
.++|...+.+... +.|-.. .|......+...|+.++|.+.|.... .+.|+ +.+..++..++.+.|+..-|..
T Consensus 666 ~~~a~~CL~Ea~~--~~~l~~~~~~~~G~~~~~~~~~~EA~~af~~Al---~ldP~hv~s~~Ala~~lle~G~~~la~~~ 740 (799)
T KOG4162|consen 666 DDEARSCLLEASK--IDPLSASVYYLRGLLLEVKGQLEEAKEAFLVAL---ALDPDHVPSMTALAELLLELGSPRLAEKR 740 (799)
T ss_pred chHHHHHHHHHHh--cchhhHHHHHHhhHHHHHHHhhHHHHHHHHHHH---hcCCCCcHHHHHHHHHHHHhCCcchHHHH
Confidence 9999888888777 555444 56666677788899999999998887 56888 8899999999999998777777
Q ss_pred -HHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 576 -LLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 576 -~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
++.++. ..| +...|-.++..+.+.|+.++|.+.|+.+.++.+.+|.
T Consensus 741 ~~L~dalr~dp~n~eaW~~LG~v~k~~Gd~~~Aaecf~aa~qLe~S~PV 789 (799)
T KOG4162|consen 741 SLLSDALRLDPLNHEAWYYLGEVFKKLGDSKQAAECFQAALQLEESNPV 789 (799)
T ss_pred HHHHHHHhhCCCCHHHHHHHHHHHHHccchHHHHHHHHHHHhhccCCCc
Confidence 777654 555 7889999999999999999999999999999887764
No 91
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.95 E-value=3.3e-08 Score=95.40 Aligned_cols=192 Identities=15% Similarity=0.155 Sum_probs=149.5
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH--
Q 047767 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL-- 525 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-- 525 (666)
+...|.-|.......++-..|+..+.+..+ .|....-.|.-.|...|.-.+|+..++.-+... |... .+.
T Consensus 318 haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al~~L~~Wi~~~--p~y~---~l~~a 392 (579)
T KOG1125|consen 318 HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQALKMLDKWIRNK--PKYV---HLVSA 392 (579)
T ss_pred HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC--ccch---hcccc
Confidence 444555566666666777778887877765 456677777788999999999999998887632 2211 111
Q ss_pred ---------HHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 047767 526 ---------AGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLR 594 (666)
Q Consensus 526 ---------~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 594 (666)
..+..........++|-.+....+..+|+.+...|.-.|--.|++++|++.|+... .+| |...|+-|+.
T Consensus 393 ~~~~~~~~~~s~~~~~~l~~i~~~fLeaa~~~~~~~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~v~Pnd~~lWNRLGA 472 (579)
T KOG1125|consen 393 GENEDFENTKSFLDSSHLAHIQELFLEAARQLPTKIDPDVQSGLGVLYNLSGEFDRAVDCFEAALQVKPNDYLLWNRLGA 472 (579)
T ss_pred CccccccCCcCCCCHHHHHHHHHHHHHHHHhCCCCCChhHHhhhHHHHhcchHHHHHHHHHHHHHhcCCchHHHHHHhhH
Confidence 12233334455666666665554767889999999999999999999999999765 666 8889999999
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
+++...+.++|+..|++++++.|.-..+.++||-.|...|.|.||.+.|=.+.
T Consensus 473 tLAN~~~s~EAIsAY~rALqLqP~yVR~RyNlgIS~mNlG~ykEA~~hlL~AL 525 (579)
T KOG1125|consen 473 TLANGNRSEEAISAYNRALQLQPGYVRVRYNLGISCMNLGAYKEAVKHLLEAL 525 (579)
T ss_pred HhcCCcccHHHHHHHHHHHhcCCCeeeeehhhhhhhhhhhhHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999987554
No 92
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.95 E-value=1.1e-05 Score=83.16 Aligned_cols=374 Identities=10% Similarity=-0.010 Sum_probs=173.8
Q ss_pred hHhHHhhhccCCCccchhhhhhcccCCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCCCC---ch--hHHHHHHHhhc
Q 047767 13 ITTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARD---MV--TYNLLISGCGK 87 (666)
Q Consensus 13 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~--~~~~ll~~~~~ 87 (666)
|..|-..|+...+...|...|+....-...+......+.+.|++..+++.|..+.-...+.. .. .|-.+--.|.+
T Consensus 495 f~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qka~a~~~k~nW~~rG~yyLe 574 (1238)
T KOG1127|consen 495 FAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQKAPAFACKENWVQRGPYYLE 574 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhhchHHHHHhhhhhccccccC
Confidence 44444555555556666666665554444455566666666666666666666633332211 11 12222234455
Q ss_pred CCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHh
Q 047767 88 FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167 (666)
Q Consensus 88 ~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 167 (666)
.++..+|+.-|+...+.. +-|...|..+..+|...|++..|.++|.+..... |.+.+.---....-+..|.+.+|...
T Consensus 575 a~n~h~aV~~fQsALR~d-PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~Lr-P~s~y~~fk~A~~ecd~GkYkeald~ 652 (1238)
T KOG1127|consen 575 AHNLHGAVCEFQSALRTD-PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLR-PLSKYGRFKEAVMECDNGKYKEALDA 652 (1238)
T ss_pred ccchhhHHHHHHHHhcCC-chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcC-cHhHHHHHHHHHHHHHhhhHHHHHHH
Confidence 666666666666666544 2355666666666666666666666666655432 11112111122223445666666655
Q ss_pred hccCCC------C----CcccHHHHHHHHHhcCCchHHHHHHHHHHH-------cCCCCCHhhHHHHHHHhcccCChHHH
Q 047767 168 FDELPE------R----NLATWNLMLRAFCELSRPDEVLRMYNKMKA-------EGVEPNGLSFCYMVRGCSIGMLLDEG 230 (666)
Q Consensus 168 ~~~~~~------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------~~~~p~~~t~~~ll~~~~~~~~~~~a 230 (666)
+..+.. + -..++-.+...+...|-...+.+.++.-.+ ....-+...|..+-.+
T Consensus 653 l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asda---------- 722 (1238)
T KOG1127|consen 653 LGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDA---------- 722 (1238)
T ss_pred HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHH----------
Confidence 554432 0 001111111112222222222222222211 1111111111111111
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHHccCCh---H---HHHHHhccCC--CCChhhHHHHHHHHHc------CC--Ch
Q 047767 231 KQLHSHVIKLGWVDVNIFVANALVDFYSACGSL---I---EAKKSFDFIP--VDDVISWNSIVSIYAD------YD--LI 294 (666)
Q Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~---~A~~~~~~~~--~~~~~~~~~li~~~~~------~g--~~ 294 (666)
..+|-+.. . -.|+......+..-.-+.+.. + -+.+.+-.-. ..+..+|..++..|.+ .+ +.
T Consensus 723 c~~f~q~e-~--~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~ 799 (1238)
T KOG1127|consen 723 CYIFSQEE-P--SIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDA 799 (1238)
T ss_pred HHHHHHhc-c--cchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhH
Confidence 11111111 0 011222111111111111111 1 0111110000 1134556656555444 11 22
Q ss_pred HHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhcc
Q 047767 295 FDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374 (666)
Q Consensus 295 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 374 (666)
..|+..+.+..+ ...+...+-..+......|++..+..-|-. ..-..|....+|..+.-.+.+..+++.|...|..
T Consensus 800 ~~Ai~c~KkaV~--L~ann~~~WnaLGVlsg~gnva~aQHCfIk--s~~sep~~~~~W~NlgvL~l~n~d~E~A~~af~~ 875 (1238)
T KOG1127|consen 800 CTAIRCCKKAVS--LCANNEGLWNALGVLSGIGNVACAQHCFIK--SRFSEPTCHCQWLNLGVLVLENQDFEHAEPAFSS 875 (1238)
T ss_pred HHHHHHHHHHHH--HhhccHHHHHHHHHhhccchhhhhhhhhhh--hhhccccchhheeccceeEEecccHHHhhHHHHh
Confidence 356666666554 234445555555666555666555544433 3334444777888888888889999999988887
Q ss_pred CCCC---CcccHHHHHHHHHhcCChhHHHHHHHH
Q 047767 375 APGR---SLECCNSLMTSLLHSGNIKDAVEMFGF 405 (666)
Q Consensus 375 ~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~ 405 (666)
...- |...|-.........|+.-+++.+|..
T Consensus 876 ~qSLdP~nl~~WlG~Ali~eavG~ii~~~~lfaH 909 (1238)
T KOG1127|consen 876 VQSLDPLNLVQWLGEALIPEAVGRIIERLILFAH 909 (1238)
T ss_pred hhhcCchhhHHHHHHHHhHHHHHHHHHHHHHHHh
Confidence 7654 444554444445556777777777765
No 93
>KOG0985 consensus Vesicle coat protein clathrin, heavy chain [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.93 E-value=0.00012 Score=75.87 Aligned_cols=322 Identities=13% Similarity=0.071 Sum_probs=170.1
Q ss_pred hhhHHHHhHhcCCChhhHHHHhhcCCC---CCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHc
Q 047767 46 SSNRTIDDFVKSGHLNSAKKLFDEMPA---RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122 (666)
Q Consensus 46 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 122 (666)
.|-.-...+..+|++++|-++--.-++ ++..|-+.+=..=...|.+.-.+.+|..+...| +.|..--..+.+.-..
T Consensus 362 Lfv~rFneLfaqG~Y~eAAkvAAsSPrgILRt~~Ti~kFq~V~a~~Gq~sPLLqYFg~LLdqG-kLNk~ETLEL~RpVL~ 440 (1666)
T KOG0985|consen 362 LFVRRFNELFAQGEYEEAAKVAASSPRGILRTPGTINKFQSVPAQPGQPSPLLQYFGTLLDQG-KLNKYETLELCRPVLQ 440 (1666)
T ss_pred HHHHHHHHHHhCccHHHHHHHHHhCchhhhcCHHHHHHHHcCCCCCCCCCcHHHHHHHHHhcc-cccHHHHHHHHHHHHh
Confidence 333444455567777777777766665 466666666666666777777888888888777 4454444444555555
Q ss_pred CCChHHHHHHHHHHH-----Hhc--CCCch-----------hhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHH
Q 047767 123 AGFYTEGIQIHCRVL-----SLG--FGLNL-----------YIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR 184 (666)
Q Consensus 123 ~~~~~~a~~~~~~~~-----~~~--~~~~~-----------~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~ 184 (666)
.|+.+.....+.+=. +.| +.|-. .+-+..+.+|+..|+++++.-...+.-. ..-|-.+++
T Consensus 441 Q~RkqLlekWl~EdKLeCSEELGDlVK~~d~~lAL~iYlrAnvp~KVi~cfAE~Gqf~KiilY~kKvGy--TPdymflLq 518 (1666)
T KOG0985|consen 441 QGRKQLLEKWLKEDKLECSEELGDLVKPYDTTLALSIYLRANVPAKVIQCFAETGQFKKIILYAKKVGY--TPDYMFLLQ 518 (1666)
T ss_pred hhHHHHHHHHhhhhhhhhhHHhcCccccCCchHHHHHHHHcCCcHHHHHHHHHhcchhHHHHHHHHcCC--CccHHHHHH
Confidence 565555554443211 122 11110 1112334444444444444433332221 112444455
Q ss_pred HHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhC-------------------C---
Q 047767 185 AFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLG-------------------W--- 242 (666)
Q Consensus 185 ~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~-------------------~--- 242 (666)
...+ -.++.+.++...|.+.. |....+..+...+...+....+..++=.+++.+ .
T Consensus 519 ~l~r-~sPD~~~qFa~~l~Q~~--~~~~die~I~DlFme~N~iQq~TSFLLdaLK~~~Pd~g~LQTrLLE~NL~~aPqVA 595 (1666)
T KOG0985|consen 519 QLKR-SSPDQALQFAMMLVQDE--EPLADIEQIVDLFMELNLIQQCTSFLLDALKLNSPDEGHLQTRLLEMNLVHAPQVA 595 (1666)
T ss_pred HHHc-cChhHHHHHHHHhhccC--CCcccHHHHHHHHHHHHhhhhhHHHHHHHhcCCChhhhhHHHHHHHHHhccchHHH
Confidence 5444 45566666555555421 111122222222222222222222222222211 0
Q ss_pred ------CCchHHHHHHHHHHHHccCChHHHHHHhccCCC--CChhhHH----HHHHHHHcCCChHHHHHHHHHhHhcCCC
Q 047767 243 ------VDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DDVISWN----SIVSIYADYDLIFDALELFFRMQLCRKR 310 (666)
Q Consensus 243 ------~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~----~li~~~~~~g~~~~a~~~~~~m~~~~~~ 310 (666)
---+..-+..+...|.+.|-...|.+.+..+.. +.++.-+ -.+..|...-.++++++.++.|...+++
T Consensus 596 DAILgN~mFtHyDra~IAqLCEKAGL~qraLehytDl~DIKR~vVhth~L~pEwLv~yFg~lsve~s~eclkaml~~Nir 675 (1666)
T KOG0985|consen 596 DAILGNDMFTHYDRAEIAQLCEKAGLLQRALEHYTDLYDIKRVVVHTHLLNPEWLVNYFGSLSVEDSLECLKAMLSANIR 675 (1666)
T ss_pred HHHHhccccccccHHHHHHHHHhcchHHHHHHhcccHHHHHHHHHHhccCCHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence 011111144566677788888888877766641 1111111 1123455556788899999999888888
Q ss_pred CChhhHHHHHHHHhccCChhhHHHHHHHHHHh-----------CCCCCchhHHhHHHHHHHhcCChHHHHHHhcc
Q 047767 311 PSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-----------GFDHGSVHVQSALTDMYGKCNVIESSVAVFES 374 (666)
Q Consensus 311 p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 374 (666)
-+..+...+..-|...-..+...++|+..... ++.. |+.+....+.+.++.|++.+..++-++
T Consensus 676 qNlQi~VQvatky~eqlg~~~li~lFE~fks~eGL~yfLgSivn~se-Dpevh~KYIqAA~kt~QikEvERicre 749 (1666)
T KOG0985|consen 676 QNLQIVVQVATKYHEQLGAQALIELFESFKSYEGLYYFLGSIVNFSE-DPEVHFKYIQAACKTGQIKEVERICRE 749 (1666)
T ss_pred hhhHHHHHHHHHHHHHhCHHHHHHHHHhhccchhHHHHHHHHhcccc-CchHHHHHHHHHHhhccHHHHHHHHhc
Confidence 88777766666665544444444444443321 3444 788888999999999998888876543
No 94
>COG3063 PilF Tfp pilus assembly protein PilF [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=98.93 E-value=2.4e-07 Score=79.00 Aligned_cols=191 Identities=14% Similarity=0.034 Sum_probs=159.7
Q ss_pred HHHHHHHHHhhCCHHHHHHHhccCCC--C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcC
Q 047767 455 SCSLMDAYSRCGHIELSHQVFEKIPS--P-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNH 530 (666)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~ 530 (666)
...|.-.|...|+...|..-+++..+ | +..+|..+...|-+.|+.+.|.+.|++..+ +.|+.- ..|....-+|.
T Consensus 38 rlqLal~YL~~gd~~~A~~nlekAL~~DPs~~~a~~~~A~~Yq~~Ge~~~A~e~YrkAls--l~p~~GdVLNNYG~FLC~ 115 (250)
T COG3063 38 RLQLALGYLQQGDYAQAKKNLEKALEHDPSYYLAHLVRAHYYQKLGENDLADESYRKALS--LAPNNGDVLNNYGAFLCA 115 (250)
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChhhHHHHHHHHHh--cCCCccchhhhhhHHHHh
Confidence 34466789999999999999998885 3 456888899999999999999999999998 677654 67777777888
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHH
Q 047767 531 SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRV 608 (666)
Q Consensus 531 ~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~ 608 (666)
.|++++|.+.|++........--..+|..++-+..++|+.+.|.+.|++.. ..| .......+.......|++..|...
T Consensus 116 qg~~~eA~q~F~~Al~~P~Y~~~s~t~eN~G~Cal~~gq~~~A~~~l~raL~~dp~~~~~~l~~a~~~~~~~~y~~Ar~~ 195 (250)
T COG3063 116 QGRPEEAMQQFERALADPAYGEPSDTLENLGLCALKAGQFDQAEEYLKRALELDPQFPPALLELARLHYKAGDYAPARLY 195 (250)
T ss_pred CCChHHHHHHHHHHHhCCCCCCcchhhhhhHHHHhhcCCchhHHHHHHHHHHhCcCCChHHHHHHHHHHhcccchHHHHH
Confidence 999999999999999873332237899999999999999999999998755 445 566778888889999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 609 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
+++.....+.+.......+.+-...|+.+.|-++=..+.
T Consensus 196 ~~~~~~~~~~~A~sL~L~iriak~~gd~~~a~~Y~~qL~ 234 (250)
T COG3063 196 LERYQQRGGAQAESLLLGIRIAKRLGDRAAAQRYQAQLQ 234 (250)
T ss_pred HHHHHhcccccHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 999999888888888888888889999888777654443
No 95
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.92 E-value=4.4e-05 Score=77.21 Aligned_cols=261 Identities=11% Similarity=0.045 Sum_probs=167.2
Q ss_pred CCCchhHHHHHH--HhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHh-c--------
Q 047767 72 ARDMVTYNLLIS--GCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL-G-------- 140 (666)
Q Consensus 72 ~~~~~~~~~ll~--~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~-------- 140 (666)
.-|..+-..|+. .|.--|+.+.|.+-.+-++ +...|..+.+.|.+.++++-|.-.+-.|... |
T Consensus 723 ~Cd~~TRkaml~FSfyvtiG~MD~AfksI~~Ik------S~~vW~nmA~McVkT~RLDVAkVClGhm~~aRgaRAlR~a~ 796 (1416)
T KOG3617|consen 723 NCDESTRKAMLDFSFYVTIGSMDAAFKSIQFIK------SDSVWDNMASMCVKTRRLDVAKVCLGHMKNARGARALRRAQ 796 (1416)
T ss_pred ccCHHHHHhhhceeEEEEeccHHHHHHHHHHHh------hhHHHHHHHHHhhhhccccHHHHhhhhhhhhhhHHHHHHHH
Confidence 346777777775 5778899999988777665 4567999999999999888888777666431 1
Q ss_pred CCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 047767 141 FGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220 (666)
Q Consensus 141 ~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 220 (666)
-.++ ..-....-.....|.+++|+.+|.+... |..|=..|...|.+++|+++-+.-.+-.+ ..||..-..-
T Consensus 797 q~~~-e~eakvAvLAieLgMlEeA~~lYr~ckR-----~DLlNKlyQs~g~w~eA~eiAE~~DRiHL---r~Tyy~yA~~ 867 (1416)
T KOG3617|consen 797 QNGE-EDEAKVAVLAIELGMLEEALILYRQCKR-----YDLLNKLYQSQGMWSEAFEIAETKDRIHL---RNTYYNYAKY 867 (1416)
T ss_pred hCCc-chhhHHHHHHHHHhhHHHHHHHHHHHHH-----HHHHHHHHHhcccHHHHHHHHhhccceeh---hhhHHHHHHH
Confidence 1121 2333333444566788888888877654 44455566677888888877654322211 2355555555
Q ss_pred hcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHH
Q 047767 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL 300 (666)
Q Consensus 221 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~ 300 (666)
+-..++.+.|.+.|++... +-..+...|.. +........+.+. |...|.-....+-..|+.+.|+.+
T Consensus 868 Lear~Di~~AleyyEK~~~-----hafev~rmL~e------~p~~~e~Yv~~~~--d~~L~~WWgqYlES~GemdaAl~~ 934 (1416)
T KOG3617|consen 868 LEARRDIEAALEYYEKAGV-----HAFEVFRMLKE------YPKQIEQYVRRKR--DESLYSWWGQYLESVGEMDAALSF 934 (1416)
T ss_pred HHhhccHHHHHHHHHhcCC-----hHHHHHHHHHh------ChHHHHHHHHhcc--chHHHHHHHHHHhcccchHHHHHH
Confidence 5566777777777765321 11222222211 1222233333333 445555566666678999999999
Q ss_pred HHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC
Q 047767 301 FFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376 (666)
Q Consensus 301 ~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 376 (666)
|+...+ |-.+++..|-.|+.++|.++-++ .| |..+...|.+.|-..|++.+|..+|.+..
T Consensus 935 Y~~A~D---------~fs~VrI~C~qGk~~kAa~iA~e---sg----d~AAcYhlaR~YEn~g~v~~Av~FfTrAq 994 (1416)
T KOG3617|consen 935 YSSAKD---------YFSMVRIKCIQGKTDKAARIAEE---SG----DKAACYHLARMYENDGDVVKAVKFFTRAQ 994 (1416)
T ss_pred HHHhhh---------hhhheeeEeeccCchHHHHHHHh---cc----cHHHHHHHHHHhhhhHHHHHHHHHHHHHH
Confidence 888764 45566667778888888776543 22 66777888999999999999988886543
No 96
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.90 E-value=1.2e-07 Score=87.71 Aligned_cols=60 Identities=12% Similarity=0.061 Sum_probs=52.0
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVD---FAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.+...+...|++++|+..++++++..|++ +.++..++.++...|++++|..+++.+..+.
T Consensus 171 ~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~ 233 (235)
T TIGR03302 171 YVARFYLKRGAYVAAINRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANY 233 (235)
T ss_pred HHHHHHHHcCChHHHHHHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 45566788999999999999999987765 4689999999999999999999999887543
No 97
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=2.5e-06 Score=82.02 Aligned_cols=175 Identities=13% Similarity=0.003 Sum_probs=122.6
Q ss_pred HHHHHHhhCCHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcH
Q 047767 458 LMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMV 534 (666)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~ 534 (666)
+..+|.+.++++.+...|.+... .+... ..+....++++...+...- +.|+.. -...-...+.+.|++
T Consensus 304 ~g~a~~k~~~~~~ai~~~~kaLte~Rt~~~-------ls~lk~~Ek~~k~~e~~a~--~~pe~A~e~r~kGne~Fk~gdy 374 (539)
T KOG0548|consen 304 LGNAYTKREDYEGAIKYYQKALTEHRTPDL-------LSKLKEAEKALKEAERKAY--INPEKAEEEREKGNEAFKKGDY 374 (539)
T ss_pred hhhhhhhHHhHHHHHHHHHHHhhhhcCHHH-------HHHHHHHHHHHHHHHHHHh--hChhHHHHHHHHHHHHHhccCH
Confidence 44567777888888888887543 12111 2233455666665555444 455543 223335678889999
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHH
Q 047767 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANIL 612 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 612 (666)
..|+..|.+++.. . +-|...|..-.-+|.+.|.+..|++=.+... ..| ....|.--+.++....+++.|.+.|++.
T Consensus 375 ~~Av~~YteAIkr-~-P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~ea 452 (539)
T KOG0548|consen 375 PEAVKHYTEAIKR-D-PEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEA 452 (539)
T ss_pred HHHHHHHHHHHhc-C-CchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999875 2 3348899999999999999999998776544 344 4456666666777778999999999999
Q ss_pred HhcCCCCcchHHHHHHHHhhcCCchHHHHHH
Q 047767 613 MELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643 (666)
Q Consensus 613 ~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 643 (666)
++.+|++......+..+...+...+...++.
T Consensus 453 le~dp~~~e~~~~~~rc~~a~~~~~~~ee~~ 483 (539)
T KOG0548|consen 453 LELDPSNAEAIDGYRRCVEAQRGDETPEETK 483 (539)
T ss_pred HhcCchhHHHHHHHHHHHHHhhcCCCHHHHH
Confidence 9999999888888888877543333333333
No 98
>KOG0548 consensus Molecular co-chaperone STI1 [Posttranslational modification, protein turnover, chaperones]
Probab=98.88 E-value=2.6e-06 Score=81.88 Aligned_cols=206 Identities=12% Similarity=0.102 Sum_probs=133.6
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCC---CHH-------HHHHHHHHHHHcCChh
Q 047767 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSP---NVV-------CFTSIMNGYSRNGMGR 500 (666)
Q Consensus 431 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~-------~~~~li~~~~~~~~~~ 500 (666)
.++..+.+-+....+.. .++.-++....+|...|.+.+....-....+. ... .+..+..+|.+.++++
T Consensus 238 k~f~~a~q~y~~a~el~--~~it~~~n~aA~~~e~~~~~~c~~~c~~a~E~gre~rad~klIak~~~r~g~a~~k~~~~~ 315 (539)
T KOG0548|consen 238 KDFETAIQHYAKALELA--TDITYLNNIAAVYLERGKYAECIELCEKAVEVGRELRADYKLIAKALARLGNAYTKREDYE 315 (539)
T ss_pred hhHHHHHHHHHHHHhHh--hhhHHHHHHHHHHHhccHHHHhhcchHHHHHHhHHHHHHHHHHHHHHHHhhhhhhhHHhHH
Confidence 33444444444443333 33444444555555555555544443332221 011 1222334566667788
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHHHHHhcCChHHHHHHHHh
Q 047767 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILDKAEELLQQ 579 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~ 579 (666)
.++..|++.......|+..+ +....+++....+... -+.|.. .--..=...+.+.|++.+|+..+.+
T Consensus 316 ~ai~~~~kaLte~Rt~~~ls---------~lk~~Ek~~k~~e~~a---~~~pe~A~e~r~kGne~Fk~gdy~~Av~~Yte 383 (539)
T KOG0548|consen 316 GAIKYYQKALTEHRTPDLLS---------KLKEAEKALKEAERKA---YINPEKAEEEREKGNEAFKKGDYPEAVKHYTE 383 (539)
T ss_pred HHHHHHHHHhhhhcCHHHHH---------HHHHHHHHHHHHHHHH---hhChhHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 88888887666554544321 2233344444443333 234442 2222236778899999999999987
Q ss_pred CC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 580 TP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 580 ~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+. ..| |...|......|.+.|.+..|+.-.+..++++|+....|..=+.++....+|++|.+.|++..+..
T Consensus 384 AIkr~P~Da~lYsNRAac~~kL~~~~~aL~Da~~~ieL~p~~~kgy~RKg~al~~mk~ydkAleay~eale~d 456 (539)
T KOG0548|consen 384 AIKRDPEDARLYSNRAACYLKLGEYPEALKDAKKCIELDPNFIKAYLRKGAALRAMKEYDKALEAYQEALELD 456 (539)
T ss_pred HHhcCCchhHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 65 455 788999999999999999999999999999999999999999999999999999999998877654
No 99
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.87 E-value=2e-07 Score=82.22 Aligned_cols=149 Identities=8% Similarity=0.055 Sum_probs=103.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCCh
Q 047767 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570 (666)
Q Consensus 491 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 570 (666)
-.|...|+++.+..-.+.+.. |. ..+...++.+++...++...+. -+.+...|..|...|...|++
T Consensus 24 ~~Y~~~g~~~~v~~~~~~~~~----~~--------~~~~~~~~~~~~i~~l~~~L~~--~P~~~~~w~~Lg~~~~~~g~~ 89 (198)
T PRK10370 24 GSYLLSPKWQAVRAEYQRLAD----PL--------HQFASQQTPEAQLQALQDKIRA--NPQNSEQWALLGEYYLWRNDY 89 (198)
T ss_pred HHHHHcchHHHHHHHHHHHhC----cc--------ccccCchhHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHCCCH
Confidence 456677777665433322211 11 0222356667777777776653 233477888888888888888
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHH-HhhCC--hHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHH
Q 047767 571 DKAEELLQQTP-GGG-DCMMWSSLLRSC-RVHGN--EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645 (666)
Q Consensus 571 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 645 (666)
++|...+++.. ..| +...+..+..++ ...|+ .++|.++++++++.+|+++.++..|+..+...|++++|+..|++
T Consensus 90 ~~A~~a~~~Al~l~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 90 DNALLAYRQALQLRGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 88888888654 444 667777777763 56666 58888888888888888888888888888888888888888888
Q ss_pred HHhCCCCc
Q 047767 646 ALARKLTR 653 (666)
Q Consensus 646 ~~~~~~~~ 653 (666)
+.+.....
T Consensus 170 aL~l~~~~ 177 (198)
T PRK10370 170 VLDLNSPR 177 (198)
T ss_pred HHhhCCCC
Confidence 87655543
No 100
>PF04733 Coatomer_E: Coatomer epsilon subunit; InterPro: IPR006822 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the epsilon subunit of the coatomer complex, which is involved in the regulation of intracellular protein trafficking between the endoplasmic reticulum and the Golgi complex []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006890 retrograde vesicle-mediated transport, Golgi to ER, 0030126 COPI vesicle coat; PDB: 3MV2_B 3MV3_F 3MKR_A.
Probab=98.79 E-value=6.8e-07 Score=83.66 Aligned_cols=56 Identities=16% Similarity=0.026 Sum_probs=39.5
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHc
Q 047767 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDE 409 (666)
Q Consensus 352 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 409 (666)
......++...|++++|++++... .+.......+..|.+.++++.|.+.++.|.+.
T Consensus 105 ~~~~A~i~~~~~~~~~AL~~l~~~--~~lE~~al~Vqi~L~~~R~dlA~k~l~~~~~~ 160 (290)
T PF04733_consen 105 QLLAATILFHEGDYEEALKLLHKG--GSLELLALAVQILLKMNRPDLAEKELKNMQQI 160 (290)
T ss_dssp HHHHHHHHCCCCHHHHHHCCCTTT--TCHHHHHHHHHHHHHTT-HHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHcCCHHHHHHHHHcc--CcccHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 334445566678888887777665 35555666778888899999999888888753
No 101
>KOG1127 consensus TPR repeat-containing protein [RNA processing and modification]
Probab=98.79 E-value=3.1e-05 Score=80.11 Aligned_cols=493 Identities=12% Similarity=0.013 Sum_probs=227.5
Q ss_pred hhhhHHHHHhHhcCChhHHHHhhccCCC---CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCC-CHhhHHHHHHH-
Q 047767 146 YIGSPLVDLYMRMGPSVRALDLFDELPE---RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEP-NGLSFCYMVRG- 220 (666)
Q Consensus 146 ~~~~~ll~~~~~~g~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p-~~~t~~~ll~~- 220 (666)
..|..|...|....+...|.+.|+...+ .+..++......|++..+++.|..+.-..-+. .| -...++.+-++
T Consensus 493 paf~~LG~iYrd~~Dm~RA~kCf~KAFeLDatdaeaaaa~adtyae~~~we~a~~I~l~~~qk--a~a~~~k~nW~~rG~ 570 (1238)
T KOG1127|consen 493 PAFAFLGQIYRDSDDMKRAKKCFDKAFELDATDAEAAAASADTYAEESTWEEAFEICLRAAQK--APAFACKENWVQRGP 570 (1238)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhhhhHHHHHHHhhccccHHHHHHHHHHHhhh--chHHHHHhhhhhccc
Confidence 3566666666666666666666665554 23445666666677777777766663222111 11 11122222222
Q ss_pred -hcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhh-HH--HHHHHHHcCCChHH
Q 047767 221 -CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVIS-WN--SIVSIYADYDLIFD 296 (666)
Q Consensus 221 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~-~~--~li~~~~~~g~~~~ 296 (666)
+...++...+..-|+...+.. |.|...|..+..+|.++|.+..|.++|.+...-++.. |. .....-+..|.+.+
T Consensus 571 yyLea~n~h~aV~~fQsALR~d--PkD~n~W~gLGeAY~~sGry~~AlKvF~kAs~LrP~s~y~~fk~A~~ecd~GkYke 648 (1238)
T KOG1127|consen 571 YYLEAHNLHGAVCEFQSALRTD--PKDYNLWLGLGEAYPESGRYSHALKVFTKASLLRPLSKYGRFKEAVMECDNGKYKE 648 (1238)
T ss_pred cccCccchhhHHHHHHHHhcCC--chhHHHHHHHHHHHHhcCceehHHHhhhhhHhcCcHhHHHHHHHHHHHHHhhhHHH
Confidence 455666666666666666664 6667777777777777777777777775554322211 11 11223345566666
Q ss_pred HHHHHHHhHhc------CCCCChhhHHHHHHHHhccCChhhHHHHHHH-------HHHhC--------------------
Q 047767 297 ALELFFRMQLC------RKRPSIRSFVEFLNFASRTGNVYFGKQIHGY-------VTKLG-------------------- 343 (666)
Q Consensus 297 a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~-------~~~~~-------------------- 343 (666)
++..+...... +..--..++......+...|-...+..+++. ...+.
T Consensus 649 ald~l~~ii~~~s~e~~~q~gLaE~~ir~akd~~~~gf~~kavd~~eksie~f~~~l~h~~~~~~~~Wi~asdac~~f~q 728 (1238)
T KOG1127|consen 649 ALDALGLIIYAFSLERTGQNGLAESVIRDAKDSAITGFQKKAVDFFEKSIESFIVSLIHSLQSDRLQWIVASDACYIFSQ 728 (1238)
T ss_pred HHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHhhhhhHHHHHHHhHHHHHHHH
Confidence 66666554321 1111112222222222222211111111111 11111
Q ss_pred CCC--CchhHHhHHHHHHHhcCCh---H---HHHHHhccCCC--CCcccHHHHHHHHHh----cC----ChhHHHHHHHH
Q 047767 344 FDH--GSVHVQSALTDMYGKCNVI---E---SSVAVFESAPG--RSLECCNSLMTSLLH----SG----NIKDAVEMFGF 405 (666)
Q Consensus 344 ~~~--~~~~~~~~l~~~~~~~~~~---~---~a~~~~~~~~~--~~~~~~~~li~~~~~----~~----~~~~a~~~~~~ 405 (666)
..| ++.++...+..-....+.. + .+.+.+-.-.. .+..+|..++..|.+ .+ +...|+..+..
T Consensus 729 ~e~~~vn~h~l~il~~q~e~~~~l~~~d~l~Lg~~c~~~hlsl~~~~~~WyNLGinylr~f~~l~et~~~~~~Ai~c~Kk 808 (1238)
T KOG1127|consen 729 EEPSIVNMHYLIILSKQLEKTGALKKNDLLFLGYECGIAHLSLAIHMYPWYNLGINYLRYFLLLGETMKDACTAIRCCKK 808 (1238)
T ss_pred hcccchHHHHHHHHHHHHHhcccCcchhHHHHHHHHhhHHHHHhhccchHHHHhHHHHHHHHHcCCcchhHHHHHHHHHH
Confidence 111 0111111111111111111 1 01111100000 133445555544433 12 12245555555
Q ss_pred HHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--C-C
Q 047767 406 MVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--P-N 482 (666)
Q Consensus 406 m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~ 482 (666)
.++. ..+...+-..+.. .+..|++.-+...+-..... .+....+|..+.-.+....+++.|...|..... | |
T Consensus 809 aV~L--~ann~~~WnaLGV--lsg~gnva~aQHCfIks~~s-ep~~~~~W~NlgvL~l~n~d~E~A~~af~~~qSLdP~n 883 (1238)
T KOG1127|consen 809 AVSL--CANNEGLWNALGV--LSGIGNVACAQHCFIKSRFS-EPTCHCQWLNLGVLVLENQDFEHAEPAFSSVQSLDPLN 883 (1238)
T ss_pred HHHH--hhccHHHHHHHHH--hhccchhhhhhhhhhhhhhc-cccchhheeccceeEEecccHHHhhHHHHhhhhcCchh
Confidence 4442 2333333333343 33334444333332221111 122344455555555666666666666666553 1 2
Q ss_pred HHHHHHHH---------------------------------------HHHHHcCChhHHHHHHHHHHHc---------CC
Q 047767 483 VVCFTSIM---------------------------------------NGYSRNGMGREALDMLEVMIQR---------GL 514 (666)
Q Consensus 483 ~~~~~~li---------------------------------------~~~~~~~~~~~a~~~~~~m~~~---------g~ 514 (666)
...|-... .....+|+.++-+...+.+-.. |.
T Consensus 884 l~~WlG~Ali~eavG~ii~~~~lfaHs~el~~~~gka~~f~Yw~c~te~h~~Ng~~e~~I~t~~ki~sAs~al~~yf~~~ 963 (1238)
T KOG1127|consen 884 LVQWLGEALIPEAVGRIIERLILFAHSDELCSKEGKAKKFQYWLCATEIHLQNGNIEESINTARKISSASLALSYYFLGH 963 (1238)
T ss_pred hHHHHHHHHhHHHHHHHHHHHHHHHhhHHhhccccccchhhHHHHHHHHHHhccchHHHHHHhhhhhhhHHHHHHHHhcC
Confidence 22222222 2222334333322222221111 12
Q ss_pred CCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHH----HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHH
Q 047767 515 IPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS----CMIDMLGRAGILDKAEELLQQTPGGGDCMMWS 590 (666)
Q Consensus 515 ~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~----~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 590 (666)
+-+...|.......-+.+.+..|.+...+...-...+.+...|+ .+.+.++..|.++.|..-+......-+..+..
T Consensus 964 p~~~fAy~~~gstlEhL~ey~~a~ela~RliglLe~k~d~sqynvak~~~gRL~lslgefe~A~~a~~~~~~evdEdi~g 1043 (1238)
T KOG1127|consen 964 PQLCFAYAANGSTLEHLEEYRAALELATRLIGLLELKLDESQYNVAKPDAGRLELSLGEFESAKKASWKEWMEVDEDIRG 1043 (1238)
T ss_pred cchhHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhhhhhhhhhhhhcchhhHhhhhcccchhHHHHHhh
Confidence 22333555555555555666666555555433222233333343 45566777888888777766555333333333
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcc---hHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFA---VYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~---~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
+-+.. .-.++++++.+.|++++.+...+.. ....++++...++..+.|...+-+...
T Consensus 1044 t~l~l-Ffkndf~~sl~~fe~aLsis~se~d~vvLl~kva~~~g~~~~k~~A~~lLfe~~~ 1103 (1238)
T KOG1127|consen 1044 TDLTL-FFKNDFFSSLEFFEQALSISNSESDKVVLLCKVAVCMGLARQKNDAQFLLFEVKS 1103 (1238)
T ss_pred hhHHH-HHHhHHHHHHHHHHHHhhhcccccchhhhhHHHHHHHhhcccchHHHHHHHHHHH
Confidence 33322 4457999999999999986655444 334556666777888888877655543
No 102
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=7.3e-08 Score=80.29 Aligned_cols=103 Identities=7% Similarity=-0.105 Sum_probs=48.7
Q ss_pred HHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhC
Q 047767 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHG 600 (666)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 600 (666)
+...+...|++++|...|+.+.. +.|+ ...|..+..++.+.|++++|+..|+... ..| +...+..++.++...|
T Consensus 30 ~g~~~~~~g~~~~A~~~~~~al~---~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~p~~~~a~~~lg~~l~~~g 106 (144)
T PRK15359 30 SGYASWQEGDYSRAVIDFSWLVM---AQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLDASHPEPVYQTGVCLKMMG 106 (144)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHcC
Confidence 34444445555555555555442 2332 4444445555555555555555554433 222 4444444444455555
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 047767 601 NEIIGRRVANILMELEPVDFAVYSQVSNF 629 (666)
Q Consensus 601 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 629 (666)
++++|+..|+++++..|+++..+...+.+
T Consensus 107 ~~~eAi~~~~~Al~~~p~~~~~~~~~~~~ 135 (144)
T PRK15359 107 EPGLAREAFQTAIKMSYADASWSEIRQNA 135 (144)
T ss_pred CHHHHHHHHHHHHHhCCCChHHHHHHHHH
Confidence 55555555555555555555444444443
No 103
>PRK15359 type III secretion system chaperone protein SscB; Provisional
Probab=98.79 E-value=8.7e-08 Score=79.85 Aligned_cols=108 Identities=10% Similarity=-0.030 Sum_probs=92.2
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
.++++..+ +.|+ .+..+...+...|++++|...|+... ..| +...|..+..++...|++++|+..|+++++++
T Consensus 14 ~~~~~al~---~~p~--~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~y~~Al~l~ 88 (144)
T PRK15359 14 DILKQLLS---VDPE--TVYASGYASWQEGDYSRAVIDFSWLVMAQPWSWRAHIALAGTWMMLKEYTTAINFYGHALMLD 88 (144)
T ss_pred HHHHHHHH---cCHH--HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 45555553 3455 35567888999999999999999765 445 78899999999999999999999999999999
Q ss_pred CCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 617 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
|+++.++..++.++...|+.++|++.|+...+...
T Consensus 89 p~~~~a~~~lg~~l~~~g~~~eAi~~~~~Al~~~p 123 (144)
T PRK15359 89 ASHPEPVYQTGVCLKMMGEPGLAREAFQTAIKMSY 123 (144)
T ss_pred CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999999999999877554
No 104
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.77 E-value=6.7e-06 Score=81.63 Aligned_cols=298 Identities=8% Similarity=-0.021 Sum_probs=173.6
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC---CCccc---HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH-HHHH
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPG---RSLEC---CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV-TLST 420 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~---~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~-~~~~ 420 (666)
....+..+...+...|+.+.+...+..... .+... .......+...|++++|...+++..+. .|+.. .+..
T Consensus 5 ~~~a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~~~~a~~~~~~g~~~~A~~~~~~~l~~--~P~~~~a~~~ 82 (355)
T cd05804 5 FALGHAAAALLLLLGGERPAAAAKAAAAAQALAARATERERAHVEALSAWIAGDLPKALALLEQLLDD--YPRDLLALKL 82 (355)
T ss_pred cHHHHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--CCCcHHHHHH
Confidence 334444455555555555554443333211 11111 112233456678889999998888775 34333 2221
Q ss_pred ---HhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHH
Q 047767 421 ---TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYS 494 (666)
Q Consensus 421 ---ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 494 (666)
.... ....+....+...+.. .....+........+...+...|++++|.+.+++..+ .+...+..+..++.
T Consensus 83 ~~~~~~~--~~~~~~~~~~~~~l~~-~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~~~p~~~~~~~~la~i~~ 159 (355)
T cd05804 83 HLGAFGL--GDFSGMRDHVARVLPL-WAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALELNPDDAWAVHAVAHVLE 159 (355)
T ss_pred hHHHHHh--cccccCchhHHHHHhc-cCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCcHHHHHHHHHHH
Confidence 1110 1123334444443333 1112222334444566778899999999999998774 45667888889999
Q ss_pred HcCChhHHHHHHHHHHHcCC-CCCH--HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHH-H--HHHHHHHhcC
Q 047767 495 RNGMGREALDMLEVMIQRGL-IPDK--VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY-S--CMIDMLGRAG 568 (666)
Q Consensus 495 ~~~~~~~a~~~~~~m~~~g~-~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~--~l~~~~~~~g 568 (666)
..|++++|...+++.....- .|+. ..|..+...+...|++++|..++++........+..... + .+...+...|
T Consensus 160 ~~g~~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g 239 (355)
T cd05804 160 MQGRFKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAG 239 (355)
T ss_pred HcCCHHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcC
Confidence 99999999999999887421 1332 245567788899999999999999986431111111111 1 3333444455
Q ss_pred ChHHHHHH---HHhCCCC-C-C--HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC---------CcchHHHHHHHHhh
Q 047767 569 ILDKAEEL---LQQTPGG-G-D--CMMWSSLLRSCRVHGNEIIGRRVANILMELEPV---------DFAVYSQVSNFYSE 632 (666)
Q Consensus 569 ~~~~A~~~---~~~~~~~-~-~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---------~~~~~~~l~~~~~~ 632 (666)
....+..+ ....... + . .........++...|+.+.|...++.+....-. ........+.++..
T Consensus 240 ~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~~~~~~~~~~~~~~~~~l~A~~~~~ 319 (355)
T cd05804 240 HVDVGDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRASSADDNKQPARDVGLPLAEALYAFA 319 (355)
T ss_pred CCChHHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCchhhhHHhhhHHHHHHHHHHH
Confidence 33333332 1111101 1 1 112224556677889999999999887663211 23445667888899
Q ss_pred cCCchHHHHHHHHHHhCC
Q 047767 633 IGEFEVSMQIRETALARK 650 (666)
Q Consensus 633 ~g~~~~A~~~~~~~~~~~ 650 (666)
.|++++|.+.+......+
T Consensus 320 ~g~~~~A~~~L~~al~~a 337 (355)
T cd05804 320 EGNYATALELLGPVRDDL 337 (355)
T ss_pred cCCHHHHHHHHHHHHHHH
Confidence 999999999998877543
No 105
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.72 E-value=3.7e-05 Score=86.81 Aligned_cols=193 Identities=12% Similarity=0.043 Sum_probs=93.4
Q ss_pred HHHHHHHhhCCHHHHHHHhccCCC-------C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCC--HHHH
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIPS-------P----NVVCFTSIMNGYSRNGMGREALDMLEVMIQR--GLIPD--KVTF 521 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~--~~~~ 521 (666)
.+...+...|+++.|...+++... + ....+..+...+...|++++|...+++.... ...+. ...+
T Consensus 536 ~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~ 615 (903)
T PRK04841 536 QQSEILFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCL 615 (903)
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHH
Confidence 344445556666666555544321 0 1122333444455556666666666655432 11121 1123
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHH-----HHHHHHHHhcCChHHHHHHHHhCCCCC--CH----HHHH
Q 047767 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY-----SCMIDMLGRAGILDKAEELLQQTPGGG--DC----MMWS 590 (666)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-----~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~----~~~~ 590 (666)
..+.......|+.+.|...++.+............+ ...+..+...|+.++|..++....... .. ..+.
T Consensus 616 ~~la~~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~ 695 (903)
T PRK04841 616 AMLAKISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWR 695 (903)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHH
Confidence 334445556666666666666654321111110001 011233344666666666665543111 11 1123
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCC------CcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPV------DFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
.+..++...|+.++|...++++++.... ...++..++.++...|+.++|...++++.+.
T Consensus 696 ~~a~~~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 696 NIARAQILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 4445556666777777666666653211 1234555666666777777777766666543
No 106
>KOG4340 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.71 E-value=2.7e-05 Score=69.17 Aligned_cols=350 Identities=16% Similarity=0.055 Sum_probs=175.2
Q ss_pred CCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC--CCcccHHH
Q 047767 104 HGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RNLATWNL 181 (666)
Q Consensus 104 ~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~~~~~~~ 181 (666)
.|+....--+.+++..+.+..++..|.+++....+.. +.+....+.|...|-+..++..|-..++++.. |...-|..
T Consensus 4 ~g~~i~EGeftaviy~lI~d~ry~DaI~~l~s~~Er~-p~~rAgLSlLgyCYY~~Q~f~~AA~CYeQL~ql~P~~~qYrl 82 (459)
T KOG4340|consen 4 SGAQIPEGEFTAVVYRLIRDARYADAIQLLGSELERS-PRSRAGLSLLGYCYYRLQEFALAAECYEQLGQLHPELEQYRL 82 (459)
T ss_pred ccccCCCCchHHHHHHHHHHhhHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHH
Confidence 3444444457777777788888888888877666554 33556667777777777788888877777765 43333332
Q ss_pred -HHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHH--hcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 047767 182 -MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG--CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258 (666)
Q Consensus 182 -li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (666)
-...+.+.+.+..|+++...|... |+...-..-+.+ .-..+++..+..++++.... .+..+.+.......
T Consensus 83 Y~AQSLY~A~i~ADALrV~~~~~D~---~~L~~~~lqLqaAIkYse~Dl~g~rsLveQlp~e----n~Ad~~in~gClly 155 (459)
T KOG4340|consen 83 YQAQSLYKACIYADALRVAFLLLDN---PALHSRVLQLQAAIKYSEGDLPGSRSLVEQLPSE----NEADGQINLGCLLY 155 (459)
T ss_pred HHHHHHHHhcccHHHHHHHHHhcCC---HHHHHHHHHHHHHHhcccccCcchHHHHHhccCC----Cccchhccchheee
Confidence 234556677777787777766542 222221112222 22445555555555554321 23333334444445
Q ss_pred ccCChHHHHHHhccCCCC----ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhH----HHHHHHHhccCChh
Q 047767 259 ACGSLIEAKKSFDFIPVD----DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSF----VEFLNFASRTGNVY 330 (666)
Q Consensus 259 ~~~~~~~A~~~~~~~~~~----~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~----~~ll~~~~~~~~~~ 330 (666)
+.|+.+.|.+-|+...+- ....||..+ ++.+.++++.|++...++.++|++-.+..- +..+++ ...|+.
T Consensus 156 kegqyEaAvqkFqaAlqvsGyqpllAYniAL-aHy~~~qyasALk~iSEIieRG~r~HPElgIGm~tegiDv-rsvgNt- 232 (459)
T KOG4340|consen 156 KEGQYEAAVQKFQAALQVSGYQPLLAYNLAL-AHYSSRQYASALKHISEIIERGIRQHPELGIGMTTEGIDV-RSVGNT- 232 (459)
T ss_pred ccccHHHHHHHHHHHHhhcCCCchhHHHHHH-HHHhhhhHHHHHHHHHHHHHhhhhcCCccCccceeccCch-hcccch-
Confidence 555555555555544321 223344333 233445555555555555555543222110 000000 000000
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcC
Q 047767 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEG 410 (666)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~ 410 (666)
.. -..+.++ ..+|.-...+.+.++++.|.+.+-.|..+.
T Consensus 233 --~~---------------lh~Sal~------------------------eAfNLKaAIeyq~~n~eAA~eaLtDmPPRa 271 (459)
T KOG4340|consen 233 --LV---------------LHQSALV------------------------EAFNLKAAIEYQLRNYEAAQEALTDMPPRA 271 (459)
T ss_pred --HH---------------HHHHHHH------------------------HHhhhhhhhhhhcccHHHHHHHhhcCCCcc
Confidence 00 0000000 112333333455666777776666664332
Q ss_pred -CCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----CCHH
Q 047767 411 -IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----PNVV 484 (666)
Q Consensus 411 -~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~ 484 (666)
-..|++|...+-- ....+++.....-+..+...+ +-...||..++-.||+..-++.|-.++.+-.. .+..
T Consensus 272 E~elDPvTLHN~Al---~n~~~~p~~g~~KLqFLL~~n-PfP~ETFANlLllyCKNeyf~lAADvLAEn~~lTyk~L~~Y 347 (459)
T KOG4340|consen 272 EEELDPVTLHNQAL---MNMDARPTEGFEKLQFLLQQN-PFPPETFANLLLLYCKNEYFDLAADVLAENAHLTYKFLTPY 347 (459)
T ss_pred cccCCchhhhHHHH---hcccCCccccHHHHHHHHhcC-CCChHHHHHHHHHHhhhHHHhHHHHHHhhCcchhHHHhhHH
Confidence 2345555443221 122334444444455555443 24566777788889998888888888876654 2334
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVM 509 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m 509 (666)
.|+.|=......-.+++|++-++.+
T Consensus 348 ly~LLdaLIt~qT~pEea~KKL~~L 372 (459)
T KOG4340|consen 348 LYDLLDALITCQTAPEEAFKKLDGL 372 (459)
T ss_pred HHHHHHHHHhCCCCHHHHHHHHHHH
Confidence 4443322222334555555554443
No 107
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.66 E-value=1.4e-06 Score=76.13 Aligned_cols=155 Identities=14% Similarity=0.060 Sum_probs=105.8
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh
Q 047767 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566 (666)
Q Consensus 487 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 566 (666)
..+-..+...|+-+....+....... ..-|.......+....+.|++..|...+.+... .-++|...|+.+.-+|.+
T Consensus 70 ~~~a~a~~~~G~a~~~l~~~~~~~~~-~~~d~~ll~~~gk~~~~~g~~~~A~~~~rkA~~--l~p~d~~~~~~lgaaldq 146 (257)
T COG5010 70 AKLATALYLRGDADSSLAVLQKSAIA-YPKDRELLAAQGKNQIRNGNFGEAVSVLRKAAR--LAPTDWEAWNLLGAALDQ 146 (257)
T ss_pred HHHHHHHHhcccccchHHHHhhhhcc-CcccHHHHHHHHHHHHHhcchHHHHHHHHHHhc--cCCCChhhhhHHHHHHHH
Confidence 45556666677777777766664431 122333455566677777777777777777765 345557777777777777
Q ss_pred cCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHH
Q 047767 567 AGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 567 ~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 644 (666)
.|+.++|..-+.+.. ..| +....+.+...+.-.|+.+.|..++..+...-+.|..+-.+|+.+....|++++|..+..
T Consensus 147 ~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~gd~~~A~~lll~a~l~~~ad~~v~~NLAl~~~~~g~~~~A~~i~~ 226 (257)
T COG5010 147 LGRFDEARRAYRQALELAPNEPSIANNLGMSLLLRGDLEDAETLLLPAYLSPAADSRVRQNLALVVGLQGDFREAEDIAV 226 (257)
T ss_pred ccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHcCCHHHHHHHHHHHHhCCCCchHHHHHHHHHHhhcCChHHHHhhcc
Confidence 777777777666543 333 566777777777777777777777777777777777777777777777777777777653
No 108
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.66 E-value=1.7e-06 Score=92.01 Aligned_cols=202 Identities=16% Similarity=0.135 Sum_probs=169.4
Q ss_pred CCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 047767 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--------PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520 (666)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 520 (666)
|.+...|-..|..+...++.++|.+++++..+ .-...|.++++.-...|.-+...++|+++.+. --....
T Consensus 1455 PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~kVFeRAcqy--cd~~~V 1532 (1710)
T KOG1070|consen 1455 PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLKKVFERACQY--CDAYTV 1532 (1710)
T ss_pred CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHHHHHHHHHHh--cchHHH
Confidence 55666777788888889999999999988763 23567888888888888888899999999872 222346
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHH
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG---DCMMWSSLLRSC 596 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~ 596 (666)
|..|...|.+.+.+++|.++++.|.++++ -....|..+++.+.+..+-++|..++.+.. .-| ........++.-
T Consensus 1533 ~~~L~~iy~k~ek~~~A~ell~~m~KKF~--q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk~eHv~~IskfAqLE 1610 (1710)
T KOG1070|consen 1533 HLKLLGIYEKSEKNDEADELLRLMLKKFG--QTRKVWIMYADFLLRQNEAEAARELLKRALKSLPKQEHVEFISKFAQLE 1610 (1710)
T ss_pred HHHHHHHHHHhhcchhHHHHHHHHHHHhc--chhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcchhhhHHHHHHHHHHH
Confidence 88899999999999999999999999866 668889999999999999999999998644 444 344555566667
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCcC
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 654 (666)
.+.||.+++..+|+..+.-.|.....|..++..-.+.|+.+.+..+|+++...++.+.
T Consensus 1611 Fk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~k 1668 (1710)
T KOG1070|consen 1611 FKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIK 1668 (1710)
T ss_pred hhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChh
Confidence 8999999999999999999999999999999999999999999999999998877654
No 109
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=98.66 E-value=8.2e-07 Score=72.25 Aligned_cols=97 Identities=8% Similarity=-0.047 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
....-.+...+...|++++|.++|+-.. ..| +...|..|...+...|++++|+..|.++..++|+||.++.+++.++.
T Consensus 35 l~~lY~~A~~ly~~G~l~~A~~~f~~L~~~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L~~ddp~~~~~ag~c~L 114 (157)
T PRK15363 35 LNTLYRYAMQLMEVKEFAGAARLFQLLTIYDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQIKIDAPQAPWAAAECYL 114 (157)
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4445566777889999999999999755 455 78899999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 047767 632 EIGEFEVSMQIRETALARK 650 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~~~ 650 (666)
..|+.+.|.+.|+...+..
T Consensus 115 ~lG~~~~A~~aF~~Ai~~~ 133 (157)
T PRK15363 115 ACDNVCYAIKALKAVVRIC 133 (157)
T ss_pred HcCCHHHHHHHHHHHHHHh
Confidence 9999999999999887765
No 110
>PF12854 PPR_1: PPR repeat
Probab=98.64 E-value=3.1e-08 Score=58.11 Aligned_cols=34 Identities=32% Similarity=0.538 Sum_probs=29.7
Q ss_pred CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCC
Q 047767 38 PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71 (666)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 71 (666)
+|+.||..+|+.||.+|++.|++++|.++|++|+
T Consensus 1 ~G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M~ 34 (34)
T PF12854_consen 1 RGCEPDVVTYNTLIDGYCKAGRVDEAFELFDEMK 34 (34)
T ss_pred CCCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhCc
Confidence 4788999999999999999999999999998885
No 111
>cd05804 StaR_like StaR_like; a well-conserved protein found in bacteria, plants, and animals. A family member from Streptomyces toyocaensis, StaR is part of a gene cluster involved in the biosynthesis of glycopeptide antibiotics (GPAs), specifically A47934. It has been speculated that StaR could be a flavoprotein hydroxylating a tyrosine sidechain. Some family members have been annotated as proteins containing tetratricopeptide (TPR) repeats, which may at least indicate mostly alpha-helical secondary structure.
Probab=98.60 E-value=5.8e-05 Score=74.96 Aligned_cols=266 Identities=14% Similarity=0.059 Sum_probs=168.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHH---
Q 047767 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCS--- 457 (666)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~--- 457 (666)
.|..+...+...|+.+.+...+....+.. ..++.... ..+.++.....++.+.+..+++...+.. +.+...+..
T Consensus 8 a~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~-~~~~a~~~~~~g~~~~A~~~~~~~l~~~-P~~~~a~~~~~~ 85 (355)
T cd05804 8 GHAAAALLLLLGGERPAAAAKAAAAAQALAARATERER-AHVEALSAWIAGDLPKALALLEQLLDDY-PRDLLALKLHLG 85 (355)
T ss_pred HHHHHHHHHHhcCCcchHHHHHHHHHHHhccCCCHHHH-HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHhHH
Confidence 44555666777788888777766655432 22333222 3344544778899999999999887764 333333331
Q ss_pred HHHHHHhhCCHHHHHHHhccCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCc
Q 047767 458 LMDAYSRCGHIELSHQVFEKIPS--PN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGM 533 (666)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~ 533 (666)
........+..+.+.+.+..... |+ ......+...+...|++++|...+++..+ ..|+. ..+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~a~~~~~~G~~~~A~~~~~~al~--~~p~~~~~~~~la~i~~~~g~ 163 (355)
T cd05804 86 AFGLGDFSGMRDHVARVLPLWAPENPDYWYLLGMLAFGLEEAGQYDRAEEAARRALE--LNPDDAWAVHAVAHVLEMQGR 163 (355)
T ss_pred HHHhcccccCchhHHHHHhccCcCCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCcHHHHHHHHHHHHcCC
Confidence 12222234566666666655332 32 34445666788899999999999999999 45554 567888889999999
Q ss_pred HHHHHHHHHHhHHhhCCCCCc--hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC--CHH-HH-H--HHHHHHHhhCChHH
Q 047767 534 VKEGQLVFNSMKSVYGIDADR--QHYSCMIDMLGRAGILDKAEELLQQTP-GGG--DCM-MW-S--SLLRSCRVHGNEII 604 (666)
Q Consensus 534 ~~~a~~~~~~~~~~~~~~p~~--~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~--~~~-~~-~--~l~~~~~~~~~~~~ 604 (666)
+++|...+++........|+. ..|..+...+...|++++|..++++.. ..| ... .. . .++..+...|..+.
T Consensus 164 ~~eA~~~l~~~l~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~g~~~~ 243 (355)
T cd05804 164 FKEGIAFMESWRDTWDCSSMLRGHNWWHLALFYLERGDYEAALAIYDTHIAPSAESDPALDLLDAASLLWRLELAGHVDV 243 (355)
T ss_pred HHHHHHHHHhhhhccCCCcchhHHHHHHHHHHHHHCCCHHHHHHHHHHHhccccCCChHHHHhhHHHHHHHHHhcCCCCh
Confidence 999999999988641112332 346678899999999999999999864 223 111 11 1 22333444554443
Q ss_pred HHHH---HHHHHhcCCCC--cchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 605 GRRV---ANILMELEPVD--FAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 605 a~~~---~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+.+. ........|.. .....+.+.++...|+.++|...++.+.....
T Consensus 244 ~~~w~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~a~~~L~~l~~~~~ 295 (355)
T cd05804 244 GDRWEDLADYAAWHFPDHGLAFNDLHAALALAGAGDKDALDKLLAALKGRAS 295 (355)
T ss_pred HHHHHHHHHHHHhhcCcccchHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHh
Confidence 3333 12211111221 22233678888999999999999998876443
No 112
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.59 E-value=1.5e-05 Score=76.18 Aligned_cols=136 Identities=18% Similarity=0.138 Sum_probs=71.6
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCCh
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFL-CVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGIL 570 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 570 (666)
+...|++++|+..++.++. -.||...|. ...+.+.+.++.++|.+.++++... .|+ ....-.+.++|.+.|++
T Consensus 316 ~~~~~~~d~A~~~l~~L~~--~~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l---~P~~~~l~~~~a~all~~g~~ 390 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIA--AQPDNPYYLELAGDILLEANKAKEAIERLKKALAL---DPNSPLLQLNLAQALLKGGKP 390 (484)
T ss_pred HHHhcccchHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhc---CCCccHHHHHHHHHHHhcCCh
Confidence 3445566666666666555 344444333 2334455566666666666665532 444 44444555666666666
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 571 DKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 571 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.+|+.+++... ..| |+..|..|.++|...|+..++... .++.|.-.|++++|+..+..+++
T Consensus 391 ~eai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A-----------------~AE~~~~~G~~~~A~~~l~~A~~ 453 (484)
T COG4783 391 QEAIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLA-----------------RAEGYALAGRLEQAIIFLMRASQ 453 (484)
T ss_pred HHHHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHH-----------------HHHHHHhCCCHHHHHHHHHHHHH
Confidence 66666655443 222 555666666666666655444333 23344455555666665555554
Q ss_pred CC
Q 047767 649 RK 650 (666)
Q Consensus 649 ~~ 650 (666)
+.
T Consensus 454 ~~ 455 (484)
T COG4783 454 QV 455 (484)
T ss_pred hc
Confidence 43
No 113
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.59 E-value=4.8e-06 Score=87.32 Aligned_cols=126 Identities=12% Similarity=0.060 Sum_probs=61.3
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 047767 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLR 594 (666)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 594 (666)
...+..|.......|++++|..+++.+.+ +.|| ......++..+.+.+++++|...+++.. ..| +......+..
T Consensus 86 ~~~~~~La~i~~~~g~~~ea~~~l~~~~~---~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~~p~~~~~~~~~a~ 162 (694)
T PRK15179 86 ELFQVLVARALEAAHRSDEGLAVWRGIHQ---RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSGGSSSAREILLEAK 162 (694)
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHh---hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhcCCCCHHHHHHHHH
Confidence 33444444445555555555555555542 2444 3334444455555555555555554433 233 2333344444
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
++...|++++|.++|+++++.+|+++.++..++.++...|+.++|...|++.
T Consensus 163 ~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a 214 (694)
T PRK15179 163 SWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAG 214 (694)
T ss_pred HHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4445555555555555555555555555555555555555555555555544
No 114
>PRK10370 formate-dependent nitrite reductase complex subunit NrfG; Provisional
Probab=98.57 E-value=4e-06 Score=74.03 Aligned_cols=153 Identities=9% Similarity=0.133 Sum_probs=118.8
Q ss_pred HHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHH
Q 047767 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEG 537 (666)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a 537 (666)
+..|...|+++.+....+.+..|.. .+...++.+++...+++..+ ..| |...|..+...|...|++++|
T Consensus 23 ~~~Y~~~g~~~~v~~~~~~~~~~~~--------~~~~~~~~~~~i~~l~~~L~--~~P~~~~~w~~Lg~~~~~~g~~~~A 92 (198)
T PRK10370 23 VGSYLLSPKWQAVRAEYQRLADPLH--------QFASQQTPEAQLQALQDKIR--ANPQNSEQWALLGEYYLWRNDYDNA 92 (198)
T ss_pred HHHHHHcchHHHHHHHHHHHhCccc--------cccCchhHHHHHHHHHHHHH--HCCCCHHHHHHHHHHHHHCCCHHHH
Confidence 4568888998887655533322210 12235677888888888877 445 555889999999999999999
Q ss_pred HHHHHHhHHhhCCCCC-chHHHHHHHHH-HhcCC--hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHH
Q 047767 538 QLVFNSMKSVYGIDAD-RQHYSCMIDML-GRAGI--LDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANI 611 (666)
Q Consensus 538 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~-~~~g~--~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~ 611 (666)
...|++..+. .|+ ...+..+..++ .+.|+ .++|.+++++.. ..| +...+..+...+...|++++|+..|++
T Consensus 93 ~~a~~~Al~l---~P~~~~~~~~lA~aL~~~~g~~~~~~A~~~l~~al~~dP~~~~al~~LA~~~~~~g~~~~Ai~~~~~ 169 (198)
T PRK10370 93 LLAYRQALQL---RGENAELYAALATVLYYQAGQHMTPQTREMIDKALALDANEVTALMLLASDAFMQADYAQAIELWQK 169 (198)
T ss_pred HHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCCCcHHHHHHHHHHHHhCCCChhHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999999854 565 88888888874 67787 599999999876 455 778888999999999999999999999
Q ss_pred HHhcCCCCcchHH
Q 047767 612 LMELEPVDFAVYS 624 (666)
Q Consensus 612 ~~~~~p~~~~~~~ 624 (666)
+++..|++..-+.
T Consensus 170 aL~l~~~~~~r~~ 182 (198)
T PRK10370 170 VLDLNSPRVNRTQ 182 (198)
T ss_pred HHhhCCCCccHHH
Confidence 9999988765543
No 115
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.55 E-value=9.7e-07 Score=73.43 Aligned_cols=100 Identities=18% Similarity=0.214 Sum_probs=66.1
Q ss_pred CCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 047767 551 DAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627 (666)
Q Consensus 551 ~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 627 (666)
.|+ ......++..+...|++++|.+.++.+. ..| +...|..+...+...|++++|...++++++.+|+++..+..++
T Consensus 13 ~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~la 92 (135)
T TIGR02552 13 DSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAYDPYNSRYWLGLAACCQMLKEYEEAIDAYALAAALDPDDPRPYFHAA 92 (135)
T ss_pred ChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCChHHHHHHH
Confidence 443 3445556666666777777777766543 233 5566666666666777777777777777777777777777777
Q ss_pred HHHhhcCCchHHHHHHHHHHhCC
Q 047767 628 NFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 628 ~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.+|...|++++|...++...+..
T Consensus 93 ~~~~~~g~~~~A~~~~~~al~~~ 115 (135)
T TIGR02552 93 ECLLALGEPESALKALDLAIEIC 115 (135)
T ss_pred HHHHHcCCHHHHHHHHHHHHHhc
Confidence 77777777777777776666543
No 116
>PLN02789 farnesyltranstransferase
Probab=98.54 E-value=1.8e-05 Score=75.13 Aligned_cols=179 Identities=9% Similarity=0.001 Sum_probs=127.5
Q ss_pred hhC-CHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCCh--hHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHH
Q 047767 464 RCG-HIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMG--REALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKE 536 (666)
Q Consensus 464 ~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~--~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 536 (666)
..| ++++++..++++.+ .+...|+.....+.+.|+. ++++.+++++.+ ..|. ...|.....++...|++++
T Consensus 83 ~L~~~l~eeL~~~~~~i~~npknyqaW~~R~~~l~~l~~~~~~~el~~~~kal~--~dpkNy~AW~~R~w~l~~l~~~~e 160 (320)
T PLN02789 83 ALDADLEEELDFAEDVAEDNPKNYQIWHHRRWLAEKLGPDAANKELEFTRKILS--LDAKNYHAWSHRQWVLRTLGGWED 160 (320)
T ss_pred HcchhHHHHHHHHHHHHHHCCcchHHhHHHHHHHHHcCchhhHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHhhhHHH
Confidence 334 46777777776653 3445566555555555653 677888888887 5564 4578888888888899999
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHHHHHhc---CCh----HHHHHHHH-hCCCCC-CHHHHHHHHHHHHhh----CChH
Q 047767 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRA---GIL----DKAEELLQ-QTPGGG-DCMMWSSLLRSCRVH----GNEI 603 (666)
Q Consensus 537 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~~----~~A~~~~~-~~~~~~-~~~~~~~l~~~~~~~----~~~~ 603 (666)
+++.++++.+. . .-+...|+....++.+. |.. ++++++.. .+...| +...|+.+...+... ++..
T Consensus 161 eL~~~~~~I~~-d-~~N~sAW~~R~~vl~~~~~l~~~~~~~e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~ 238 (320)
T PLN02789 161 ELEYCHQLLEE-D-VRNNSAWNQRYFVITRSPLLGGLEAMRDSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDP 238 (320)
T ss_pred HHHHHHHHHHH-C-CCchhHHHHHHHHHHhccccccccccHHHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccch
Confidence 99999999875 2 23366777766666554 323 45666664 444566 778888888887763 4556
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHhhcC------------------CchHHHHHHHHH
Q 047767 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIG------------------EFEVSMQIRETA 646 (666)
Q Consensus 604 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g------------------~~~~A~~~~~~~ 646 (666)
+|.+...++.+.+|+++.++..|+.+|+... ..++|.++++.+
T Consensus 239 ~~~~~~~~~~~~~~~s~~al~~l~d~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~l 299 (320)
T PLN02789 239 EVSSVCLEVLSKDSNHVFALSDLLDLLCEGLQPTAEFRDTVDTLAEELSDSTLAQAVCSEL 299 (320)
T ss_pred hHHHHHHHhhcccCCcHHHHHHHHHHHHhhhccchhhhhhhhccccccccHHHHHHHHHHH
Confidence 7889999999999999999999999998643 236788888877
No 117
>KOG0624 consensus dsRNA-activated protein kinase inhibitor P58, contains TPR and DnaJ domains [Defense mechanisms]
Probab=98.54 E-value=9.3e-05 Score=67.22 Aligned_cols=84 Identities=14% Similarity=0.082 Sum_probs=66.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCH--H---HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHh
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDK--V---TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGR 566 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~--~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 566 (666)
....++|.++++-.+...+ ..|.. . .+..+-.++...|++.+|++...++. .+.|| +.++.--.++|.-
T Consensus 279 ~ie~~~~t~cle~ge~vlk--~ep~~~~ir~~~~r~~c~C~~~d~~~~eAiqqC~evL---~~d~~dv~~l~dRAeA~l~ 353 (504)
T KOG0624|consen 279 AIEEKHWTECLEAGEKVLK--NEPEETMIRYNGFRVLCTCYREDEQFGEAIQQCKEVL---DIDPDDVQVLCDRAEAYLG 353 (504)
T ss_pred HHhhhhHHHHHHHHHHHHh--cCCcccceeeeeeheeeecccccCCHHHHHHHHHHHH---hcCchHHHHHHHHHHHHhh
Confidence 4556788888888888777 34542 2 24445566778899999999999998 45777 8888888999999
Q ss_pred cCChHHHHHHHHhCC
Q 047767 567 AGILDKAEELLQQTP 581 (666)
Q Consensus 567 ~g~~~~A~~~~~~~~ 581 (666)
...+++|+.-|+...
T Consensus 354 dE~YD~AI~dye~A~ 368 (504)
T KOG0624|consen 354 DEMYDDAIHDYEKAL 368 (504)
T ss_pred hHHHHHHHHHHHHHH
Confidence 999999999998776
No 118
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.51 E-value=7.3e-06 Score=71.09 Aligned_cols=186 Identities=14% Similarity=0.091 Sum_probs=144.0
Q ss_pred hhCCHHHHHHHhccCCC--------CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH-HHHHHhcCCCc
Q 047767 464 RCGHIELSHQVFEKIPS--------PNV-VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL-CVLAGCNHSGM 533 (666)
Q Consensus 464 ~~g~~~~A~~~~~~~~~--------~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~-~l~~~~~~~g~ 533 (666)
...+.++..+++.++.. ++. ..|..++-+....|+.+.|...++++...- |...-.. .-.--+-..|+
T Consensus 24 ~~rnseevv~l~~~~~~~~k~~~~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~f--p~S~RV~~lkam~lEa~~~ 101 (289)
T KOG3060|consen 24 TVRNSEEVVQLGSEVLNYSKSGALGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRF--PGSKRVGKLKAMLLEATGN 101 (289)
T ss_pred cccCHHHHHHHHHHHHHHhhhcccCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhC--CCChhHHHHHHHHHHHhhc
Confidence 34678888888887762 333 346666677788899999999999998863 5543221 11223556789
Q ss_pred HHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHH
Q 047767 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611 (666)
Q Consensus 534 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 611 (666)
+++|.++++.+.++ . +.|..++..=+-..-.+|+.-+|++-+.+.. +..|...|.-+...|...|+++.|.-.+++
T Consensus 102 ~~~A~e~y~~lL~d-d-pt~~v~~KRKlAilka~GK~l~aIk~ln~YL~~F~~D~EAW~eLaeiY~~~~~f~kA~fClEE 179 (289)
T KOG3060|consen 102 YKEAIEYYESLLED-D-PTDTVIRKRKLAILKAQGKNLEAIKELNEYLDKFMNDQEAWHELAEIYLSEGDFEKAAFCLEE 179 (289)
T ss_pred hhhHHHHHHHHhcc-C-cchhHHHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhHhHHHHHHHHHHH
Confidence 99999999999976 2 3447777766777778888889988877655 567999999999999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHhhcC---CchHHHHHHHHHHhCCCCc
Q 047767 612 LMELEPVDFAVYSQVSNFYSEIG---EFEVSMQIRETALARKLTR 653 (666)
Q Consensus 612 ~~~~~p~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~ 653 (666)
++-..|-++-.+..|+.+++..| +++-|.++|.+..+...+.
T Consensus 180 ~ll~~P~n~l~f~rlae~~Yt~gg~eN~~~arkyy~~alkl~~~~ 224 (289)
T KOG3060|consen 180 LLLIQPFNPLYFQRLAEVLYTQGGAENLELARKYYERALKLNPKN 224 (289)
T ss_pred HHHcCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhChHh
Confidence 99999999999999999998876 5567888888777665533
No 119
>COG5010 TadD Flp pilus assembly protein TadD, contains TPR repeats [Intracellular trafficking and secretion]
Probab=98.50 E-value=1.5e-05 Score=69.83 Aligned_cols=92 Identities=17% Similarity=0.133 Sum_probs=43.1
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 633 (666)
....++....+.|++.+|+..+++.. .++|...|+.+..+|.+.|++++|...|.+++++.|+++.++.+|+..|.-.
T Consensus 102 ll~~~gk~~~~~g~~~~A~~~~rkA~~l~p~d~~~~~~lgaaldq~Gr~~~Ar~ay~qAl~L~~~~p~~~nNlgms~~L~ 181 (257)
T COG5010 102 LLAAQGKNQIRNGNFGEAVSVLRKAARLAPTDWEAWNLLGAALDQLGRFDEARRAYRQALELAPNEPSIANNLGMSLLLR 181 (257)
T ss_pred HHHHHHHHHHHhcchHHHHHHHHHHhccCCCChhhhhHHHHHHHHccChhHHHHHHHHHHHhccCCchhhhhHHHHHHHc
Confidence 33334444444444444444444432 2224444444444444444444444444444444444444444444444444
Q ss_pred CCchHHHHHHHHHH
Q 047767 634 GEFEVSMQIRETAL 647 (666)
Q Consensus 634 g~~~~A~~~~~~~~ 647 (666)
|++++|..++....
T Consensus 182 gd~~~A~~lll~a~ 195 (257)
T COG5010 182 GDLEDAETLLLPAY 195 (257)
T ss_pred CCHHHHHHHHHHHH
Confidence 44444444444443
No 120
>PF12854 PPR_1: PPR repeat
Probab=98.49 E-value=2e-07 Score=54.64 Aligned_cols=32 Identities=34% Similarity=0.529 Sum_probs=18.4
Q ss_pred CCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 047767 549 GIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580 (666)
Q Consensus 549 ~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (666)
|+.||..+|+.|+++|++.|++++|.++|++|
T Consensus 2 G~~Pd~~ty~~lI~~~Ck~G~~~~A~~l~~~M 33 (34)
T PF12854_consen 2 GCEPDVVTYNTLIDGYCKAGRVDEAFELFDEM 33 (34)
T ss_pred CCCCcHhHHHHHHHHHHHCCCHHHHHHHHHhC
Confidence 45555555555555555555555555555555
No 121
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.47 E-value=6.8e-06 Score=82.06 Aligned_cols=191 Identities=10% Similarity=0.064 Sum_probs=106.2
Q ss_pred CCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047767 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527 (666)
Q Consensus 448 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 527 (666)
++|-...-..+...+...|-...|..+|+++ ..|.-.|.+|+..|+..+|..+..+-.+ -+||...|..+.+.
T Consensus 394 lpp~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv 466 (777)
T KOG1128|consen 394 LPPIWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV 466 (777)
T ss_pred CCCcchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh
Confidence 3444444445555566666666666666543 3455556666666666666666655555 34555555555554
Q ss_pred hcCCC----------------------------cHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHH
Q 047767 528 CNHSG----------------------------MVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQ 578 (666)
Q Consensus 528 ~~~~g----------------------------~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 578 (666)
..... ++.++.+.|+.-.+. .|- ..+|-.+.-+..+.+++..|.+.|.
T Consensus 467 ~~d~s~yEkawElsn~~sarA~r~~~~~~~~~~~fs~~~~hle~sl~~---nplq~~~wf~~G~~ALqlek~q~av~aF~ 543 (777)
T KOG1128|consen 467 LHDPSLYEKAWELSNYISARAQRSLALLILSNKDFSEADKHLERSLEI---NPLQLGTWFGLGCAALQLEKEQAAVKAFH 543 (777)
T ss_pred ccChHHHHHHHHHhhhhhHHHHHhhccccccchhHHHHHHHHHHHhhc---CccchhHHHhccHHHHHHhhhHHHHHHHH
Confidence 44444 444444444443322 222 4455555555556666666666655
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 579 QTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 579 ~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
... ..| +...|+++-.+|.+.++..+|...++++++.+-.+..+|.+..-+...-|.+++|++.+..+.+
T Consensus 544 rcvtL~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKcn~~~w~iWENymlvsvdvge~eda~~A~~rll~ 615 (777)
T KOG1128|consen 544 RCVTLEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKCNYQHWQIWENYMLVSVDVGEFEDAIKAYHRLLD 615 (777)
T ss_pred HHhhcCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhcCCCCCeeeechhhhhhhcccHHHHHHHHHHHHH
Confidence 433 333 4456666666666666666666666666665555555666666666666666666666665543
No 122
>KOG1128 consensus Uncharacterized conserved protein, contains TPR repeats [General function prediction only]
Probab=98.45 E-value=5.9e-06 Score=82.45 Aligned_cols=214 Identities=11% Similarity=0.035 Sum_probs=137.1
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhh
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSV 427 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~ 427 (666)
-......+...+.+.|-...|..+|+++ ..|..+|.+|+..|+.++|..+..+..+ -+||...|..+... .
T Consensus 397 ~Wq~q~~laell~slGitksAl~I~Erl-----emw~~vi~CY~~lg~~~kaeei~~q~le--k~~d~~lyc~LGDv--~ 467 (777)
T KOG1128|consen 397 IWQLQRLLAELLLSLGITKSALVIFERL-----EMWDPVILCYLLLGQHGKAEEINRQELE--KDPDPRLYCLLGDV--L 467 (777)
T ss_pred cchHHHHHHHHHHHcchHHHHHHHHHhH-----HHHHHHHHHHHHhcccchHHHHHHHHhc--CCCcchhHHHhhhh--c
Confidence 6667778899999999999999999865 3477788899999999999998888777 36777777776666 4
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHH
Q 047767 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALD 504 (666)
Q Consensus 428 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~ 504 (666)
....-+++|.++....... .-..+.....+.++++++.+.|+.-.+ -...+|-.+..+..+.++++.|.+
T Consensus 468 ~d~s~yEkawElsn~~sar-------A~r~~~~~~~~~~~fs~~~~hle~sl~~nplq~~~wf~~G~~ALqlek~q~av~ 540 (777)
T KOG1128|consen 468 HDPSLYEKAWELSNYISAR-------AQRSLALLILSNKDFSEADKHLERSLEINPLQLGTWFGLGCAALQLEKEQAAVK 540 (777)
T ss_pred cChHHHHHHHHHhhhhhHH-------HHHhhccccccchhHHHHHHHHHHHhhcCccchhHHHhccHHHHHHhhhHHHHH
Confidence 4444455555554433221 111122222335666666666664332 234556666666666666666666
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 505 MLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 505 ~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
.|..-.. ..||.. .|+.+-.+|.+.|+-.+|...+.+..+- + .-+...|...+....+.|.+++|++.+.++.
T Consensus 541 aF~rcvt--L~Pd~~eaWnNls~ayi~~~~k~ra~~~l~EAlKc-n-~~~w~iWENymlvsvdvge~eda~~A~~rll 614 (777)
T KOG1128|consen 541 AFHRCVT--LEPDNAEAWNNLSTAYIRLKKKKRAFRKLKEALKC-N-YQHWQIWENYMLVSVDVGEFEDAIKAYHRLL 614 (777)
T ss_pred HHHHHhh--cCCCchhhhhhhhHHHHHHhhhHHHHHHHHHHhhc-C-CCCCeeeechhhhhhhcccHHHHHHHHHHHH
Confidence 6666665 566654 5666666666666666666666666654 3 3334555555566666666666666666544
No 123
>PRK15179 Vi polysaccharide biosynthesis protein TviE; Provisional
Probab=98.45 E-value=2.4e-05 Score=82.19 Aligned_cols=140 Identities=11% Similarity=0.063 Sum_probs=119.8
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHH
Q 047767 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYS 558 (666)
Q Consensus 481 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 558 (666)
.++..+..|.....+.|+.++|..+|+...+ +.||.. ....+...+.+.+++++|...+++.... .|+ .....
T Consensus 84 ~~~~~~~~La~i~~~~g~~~ea~~~l~~~~~--~~Pd~~~a~~~~a~~L~~~~~~eeA~~~~~~~l~~---~p~~~~~~~ 158 (694)
T PRK15179 84 HTELFQVLVARALEAAHRSDEGLAVWRGIHQ--RFPDSSEAFILMLRGVKRQQGIEAGRAEIELYFSG---GSSSAREIL 158 (694)
T ss_pred ccHHHHHHHHHHHHHcCCcHHHHHHHHHHHh--hCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHhhc---CCCCHHHHH
Confidence 4577888899999999999999999999999 889877 6777888999999999999999999854 677 67778
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 559 CMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
.+..++...|++++|.++|+++. ..| +...+..+..++...|+.++|...|+++++...+....|..
T Consensus 159 ~~a~~l~~~g~~~~A~~~y~~~~~~~p~~~~~~~~~a~~l~~~G~~~~A~~~~~~a~~~~~~~~~~~~~ 227 (694)
T PRK15179 159 LEAKSWDEIGQSEQADACFERLSRQHPEFENGYVGWAQSLTRRGALWRARDVLQAGLDAIGDGARKLTR 227 (694)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhhCcchHHHHH
Confidence 88899999999999999999877 444 46788889999999999999999999999977665555443
No 124
>TIGR03302 OM_YfiO outer membrane assembly lipoprotein YfiO. Members of this protein family include YfiO, a near-essential protein of the outer membrane, part of a complex involved in protein insertion into the bacterial outer membrane. Many proteins in this family are annotated as ComL, based on the involvement of this protein in natural transformation with exogenous DNA in Neisseria gonorrhoeae. This protein family shows sequence similarity to, but is distinct from, the tol-pal system protein YbgF (TIGR02795).
Probab=98.43 E-value=8.6e-06 Score=75.27 Aligned_cols=162 Identities=12% Similarity=0.076 Sum_probs=119.5
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHhccCCC--CC-H---HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----H
Q 047767 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PN-V---VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV----T 520 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~ 520 (666)
....+-.+...+...|+++.|...|+++.+ |+ . ..+..+..++.+.|++++|...++++.+. .|+.. +
T Consensus 32 ~~~~~~~~g~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~la~~~~~~~~~~~A~~~~~~~l~~--~p~~~~~~~a 109 (235)
T TIGR03302 32 PAEELYEEAKEALDSGDYTEAIKYFEALESRYPFSPYAEQAQLDLAYAYYKSGDYAEAIAAADRFIRL--HPNHPDADYA 109 (235)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCchHHH
Confidence 444555667778888999999999987764 32 2 35677788889999999999999999873 44322 3
Q ss_pred HHHHHHHhcCC--------CcHHHHHHHHHHhHHhhCCCCCch-HH-----------------HHHHHHHHhcCChHHHH
Q 047767 521 FLCVLAGCNHS--------GMVKEGQLVFNSMKSVYGIDADRQ-HY-----------------SCMIDMLGRAGILDKAE 574 (666)
Q Consensus 521 ~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~~p~~~-~~-----------------~~l~~~~~~~g~~~~A~ 574 (666)
+..+..++... |+.+.|.+.++.+... .|+.. .+ ..+...|.+.|++.+|+
T Consensus 110 ~~~~g~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~a~~~~~~~~~~~~~~~~~~a~~~~~~g~~~~A~ 186 (235)
T TIGR03302 110 YYLRGLSNYNQIDRVDRDQTAAREAFEAFQELIRR---YPNSEYAPDAKKRMDYLRNRLAGKELYVARFYLKRGAYVAAI 186 (235)
T ss_pred HHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHH---CCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCChHHHH
Confidence 44444444433 7788999999999865 45422 11 24567788999999999
Q ss_pred HHHHhCC-C---CC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 575 ELLQQTP-G---GG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 575 ~~~~~~~-~---~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
..++... . .| ....+..++.++...|++++|...++.+....|
T Consensus 187 ~~~~~al~~~p~~~~~~~a~~~l~~~~~~lg~~~~A~~~~~~l~~~~~ 234 (235)
T TIGR03302 187 NRFETVVENYPDTPATEEALARLVEAYLKLGLKDLAQDAAAVLGANYP 234 (235)
T ss_pred HHHHHHHHHCCCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCC
Confidence 9998764 2 23 356888999999999999999999988877665
No 125
>PLN02789 farnesyltranstransferase
Probab=98.41 E-value=1.4e-05 Score=76.01 Aligned_cols=186 Identities=11% Similarity=0.027 Sum_probs=138.6
Q ss_pred HHHHhhCCHHHHHHHhccCCC--C-CHHHHHHHHHHHHHcC-ChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCc-
Q 047767 460 DAYSRCGHIELSHQVFEKIPS--P-NVVCFTSIMNGYSRNG-MGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGM- 533 (666)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~- 533 (666)
..+...++.++|....+++.+ | +...|+..-.++...| ++++++..++++.+. .|+. .+|+.....+.+.|+
T Consensus 45 a~l~~~e~serAL~lt~~aI~lnP~~ytaW~~R~~iL~~L~~~l~eeL~~~~~~i~~--npknyqaW~~R~~~l~~l~~~ 122 (320)
T PLN02789 45 AVYASDERSPRALDLTADVIRLNPGNYTVWHFRRLCLEALDADLEEELDFAEDVAED--NPKNYQIWHHRRWLAEKLGPD 122 (320)
T ss_pred HHHHcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHcchhHHHHHHHHHHHHHH--CCcchHHhHHHHHHHHHcCch
Confidence 344556788889888888774 3 3456666666666677 679999999999984 4544 356655444555554
Q ss_pred -HHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh---CC----h
Q 047767 534 -VKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH---GN----E 602 (666)
Q Consensus 534 -~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~----~ 602 (666)
.+++..+++++.+. .|. ..+|+....++.+.|++++|++.++++. ..| +...|+.....+.+. |. .
T Consensus 123 ~~~~el~~~~kal~~---dpkNy~AW~~R~w~l~~l~~~~eeL~~~~~~I~~d~~N~sAW~~R~~vl~~~~~l~~~~~~~ 199 (320)
T PLN02789 123 AANKELEFTRKILSL---DAKNYHAWSHRQWVLRTLGGWEDELEYCHQLLEEDVRNNSAWNQRYFVITRSPLLGGLEAMR 199 (320)
T ss_pred hhHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCchhHHHHHHHHHHhccccccccccH
Confidence 36788899888854 555 7889988999999999999999999876 334 777888877766554 22 3
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHhhc----CCchHHHHHHHHHHhCC
Q 047767 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEI----GEFEVSMQIRETALARK 650 (666)
Q Consensus 603 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~ 650 (666)
+++++...++++.+|+|..+|..++.++... ++..+|.+.+....+.+
T Consensus 200 e~el~y~~~aI~~~P~N~SaW~Yl~~ll~~~~~~l~~~~~~~~~~~~~~~~~ 251 (320)
T PLN02789 200 DSELKYTIDAILANPRNESPWRYLRGLFKDDKEALVSDPEVSSVCLEVLSKD 251 (320)
T ss_pred HHHHHHHHHHHHhCCCCcCHHHHHHHHHhcCCcccccchhHHHHHHHhhccc
Confidence 5678888999999999999999999999883 45677888887766543
No 126
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=98.40 E-value=4.9e-05 Score=80.68 Aligned_cols=44 Identities=9% Similarity=0.102 Sum_probs=36.7
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
++..+-.-|....++++++.+++.+++.+|.|..+...++.+|.
T Consensus 225 ~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 225 LLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 34444455667788999999999999999999999999999997
No 127
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.39 E-value=0.00016 Score=63.49 Aligned_cols=155 Identities=13% Similarity=0.044 Sum_probs=113.1
Q ss_pred HHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc----CCCcH
Q 047767 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN----HSGMV 534 (666)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~----~~g~~ 534 (666)
...|+..|++++|++...... +....-.=+..+.+..+++-|.+.+++|.+ + -+..|.+.|..++. -.+.+
T Consensus 115 a~i~~~~~~~deAl~~~~~~~--~lE~~Al~VqI~lk~~r~d~A~~~lk~mq~--i-ded~tLtQLA~awv~la~ggek~ 189 (299)
T KOG3081|consen 115 AIIYMHDGDFDEALKALHLGE--NLEAAALNVQILLKMHRFDLAEKELKKMQQ--I-DEDATLTQLAQAWVKLATGGEKI 189 (299)
T ss_pred hHHhhcCCChHHHHHHHhccc--hHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--c-chHHHHHHHHHHHHHHhccchhh
Confidence 345778888888888887733 333333334456677888999999999987 2 24557776766654 34568
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHH-HHHHHHH
Q 047767 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEII-GRRVANI 611 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~-a~~~~~~ 611 (666)
.+|.-+|+++-++ ..|++.+.+..+-+....|++++|..+++... ...++.+...++..-...|...+ ..+.+.+
T Consensus 190 qdAfyifeE~s~k--~~~T~~llnG~Av~~l~~~~~eeAe~lL~eaL~kd~~dpetL~Nliv~a~~~Gkd~~~~~r~l~Q 267 (299)
T KOG3081|consen 190 QDAFYIFEELSEK--TPPTPLLLNGQAVCHLQLGRYEEAESLLEEALDKDAKDPETLANLIVLALHLGKDAEVTERNLSQ 267 (299)
T ss_pred hhHHHHHHHHhcc--cCCChHHHccHHHHHHHhcCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHhCCChHHHHHHHHH
Confidence 8899999999863 67888899999999999999999999998776 23367777777776666675544 4577888
Q ss_pred HHhcCCCCc
Q 047767 612 LMELEPVDF 620 (666)
Q Consensus 612 ~~~~~p~~~ 620 (666)
.....|..+
T Consensus 268 Lk~~~p~h~ 276 (299)
T KOG3081|consen 268 LKLSHPEHP 276 (299)
T ss_pred HHhcCCcch
Confidence 888888765
No 128
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.38 E-value=0.0046 Score=64.10 Aligned_cols=72 Identities=17% Similarity=0.077 Sum_probs=35.4
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCCh
Q 047767 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL 263 (666)
Q Consensus 188 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 263 (666)
+.|..++|..+++.....+.. |..|...+-..|...+..+++..+|++..+.. |+......+..+|.|.+++
T Consensus 55 r~gk~~ea~~~Le~~~~~~~~-D~~tLq~l~~~y~d~~~~d~~~~~Ye~~~~~~---P~eell~~lFmayvR~~~y 126 (932)
T KOG2053|consen 55 RLGKGDEALKLLEALYGLKGT-DDLTLQFLQNVYRDLGKLDEAVHLYERANQKY---PSEELLYHLFMAYVREKSY 126 (932)
T ss_pred HhcCchhHHHHHhhhccCCCC-chHHHHHHHHHHHHHhhhhHHHHHHHHHHhhC---CcHHHHHHHHHHHHHHHHH
Confidence 445555555555444443322 44455555455555555555555555555442 3345555555555555443
No 129
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.37 E-value=5.3e-06 Score=80.26 Aligned_cols=122 Identities=14% Similarity=0.148 Sum_probs=101.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCR 597 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 597 (666)
....|+..+...++++.|.++++++.+. .|+ ....+++.+...++-.+|++++++.. ..| +...+......+.
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~---~pe--v~~~LA~v~l~~~~E~~AI~ll~~aL~~~p~d~~LL~~Qa~fLl 245 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRER---DPE--VAVLLARVYLLMNEEVEAIRLLNEALKENPQDSELLNLQAEFLL 245 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhc---CCc--HHHHHHHHHHhcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 3556677777888999999999999865 355 44558888888888899999988765 445 6666666666788
Q ss_pred hhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
..++++.|+.+.+++.+..|.+..+|..|+.+|...|++++|+-.+..+
T Consensus 246 ~k~~~~lAL~iAk~av~lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~ 294 (395)
T PF09295_consen 246 SKKKYELALEIAKKAVELSPSEFETWYQLAECYIQLGDFENALLALNSC 294 (395)
T ss_pred hcCCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHhcCCHHHHHHHHhcC
Confidence 9999999999999999999999999999999999999999999888755
No 130
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.37 E-value=0.00081 Score=76.13 Aligned_cols=261 Identities=11% Similarity=-0.043 Sum_probs=141.9
Q ss_pred HHHcCCChHHHHHHHHHhHhcCCCCCh----hhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCC----chhHHhHHHHH
Q 047767 287 IYADYDLIFDALELFFRMQLCRKRPSI----RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHG----SVHVQSALTDM 358 (666)
Q Consensus 287 ~~~~~g~~~~a~~~~~~m~~~~~~p~~----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~ 358 (666)
.+...|++++|...++.....-...+. .....+...+...|+++.|...+........... .......+...
T Consensus 461 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~a~~~lg~~~~~~G~~~~A~~~~~~al~~~~~~g~~~~~~~~~~~la~~ 540 (903)
T PRK04841 461 VAINDGDPEEAERLAELALAELPLTWYYSRIVATSVLGEVHHCKGELARALAMMQQTEQMARQHDVYHYALWSLLQQSEI 540 (903)
T ss_pred HHHhCCCHHHHHHHHHHHHhcCCCccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhhhcchHHHHHHHHHHHHH
Confidence 344566777777766665542111111 1223333344556777777666666554311110 12233445566
Q ss_pred HHhcCChHHHHHHhccCCC-------CC----cccHHHHHHHHHhcCChhHHHHHHHHHHHcC--CCCCHHHHHHHhchh
Q 047767 359 YGKCNVIESSVAVFESAPG-------RS----LECCNSLMTSLLHSGNIKDAVEMFGFMVDEG--IGLDEVTLSTTLKAL 425 (666)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~-------~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~~~~~~~ll~~~ 425 (666)
+...|+++.|...+++... ++ ...+..+...+...|++++|...+.+..... ..+..........+.
T Consensus 541 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 620 (903)
T PRK04841 541 LFAQGFLQAAYETQEKAFQLIEEQHLEQLPMHEFLLRIRAQLLWEWARLDEAEQCARKGLEVLSNYQPQQQLQCLAMLAK 620 (903)
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHhHHhhhccCchHHHHHHHHHHH
Confidence 6667777777666544321 01 1122334445566688888877777665421 112211111111122
Q ss_pred hhhcccchhhHHHHHHHHHHhC--CCCch---H-HHHHHHHHHHhhCCHHHHHHHhccCCCCC---H----HHHHHHHHH
Q 047767 426 SVSASANLGSCRLLHCCAIKSG--FESNI---A-VSCSLMDAYSRCGHIELSHQVFEKIPSPN---V----VCFTSIMNG 492 (666)
Q Consensus 426 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~---~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~----~~~~~li~~ 492 (666)
.....|+.+.|...+....... ..... . .....+..+...|+.+.|.+.+.....+. . ..+..+..+
T Consensus 621 ~~~~~G~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~~~~~~~~a~~ 700 (903)
T PRK04841 621 ISLARGDLDNARRYLNRLENLLGNGRYHSDWIANADKVRLIYWQMTGDKEAAANWLRQAPKPEFANNHFLQGQWRNIARA 700 (903)
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhcccccHhHhhHHHHHHHHHHHHCCCHHHHHHHHHhcCCCCCccchhHHHHHHHHHHH
Confidence 2556777777777766654321 11100 0 00112234455788888888886655321 1 113456677
Q ss_pred HHHcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHh
Q 047767 493 YSRNGMGREALDMLEVMIQR----GLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 547 (666)
+...|++++|...+++.... |..++. .+...+..++...|+.++|...+.+..+.
T Consensus 701 ~~~~g~~~~A~~~l~~al~~~~~~g~~~~~a~~~~~la~a~~~~G~~~~A~~~L~~Al~l 760 (903)
T PRK04841 701 QILLGQFDEAEIILEELNENARSLRLMSDLNRNLILLNQLYWQQGRKSEAQRVLLEALKL 760 (903)
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 88889999999998887653 333322 24556667788899999999999988875
No 131
>KOG1125 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.35 E-value=4.7e-05 Score=74.23 Aligned_cols=249 Identities=10% Similarity=0.056 Sum_probs=146.6
Q ss_pred hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHH
Q 047767 324 SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR---SLECCNSLMTSLLHSGNIKDAV 400 (666)
Q Consensus 324 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~ 400 (666)
.+.|++..|.-.|+..++.... +..+|..|.......++-..|+..+.+..+- |......|.-.|...|.-..|+
T Consensus 296 m~nG~L~~A~LafEAAVkqdP~--haeAW~~LG~~qaENE~E~~ai~AL~rcl~LdP~NleaLmaLAVSytNeg~q~~Al 373 (579)
T KOG1125|consen 296 MKNGDLSEAALAFEAAVKQDPQ--HAEAWQKLGITQAENENEQNAISALRRCLELDPTNLEALMALAVSYTNEGLQNQAL 373 (579)
T ss_pred HhcCCchHHHHHHHHHHhhChH--HHHHHHHhhhHhhhccchHHHHHHHHHHHhcCCccHHHHHHHHHHHhhhhhHHHHH
Confidence 4566677777777777776444 7888888888888888888888888877654 4455666777888889889999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC
Q 047767 401 EMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS 480 (666)
Q Consensus 401 ~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 480 (666)
..++.-+... |.- ..+..+ ...++.+.. +-.++...+..+-..|.... ..... +
T Consensus 374 ~~L~~Wi~~~--p~y---~~l~~a---~~~~~~~~~----------~s~~~~~~l~~i~~~fLeaa------~~~~~--~ 427 (579)
T KOG1125|consen 374 KMLDKWIRNK--PKY---VHLVSA---GENEDFENT----------KSFLDSSHLAHIQELFLEAA------RQLPT--K 427 (579)
T ss_pred HHHHHHHHhC--ccc---hhcccc---CccccccCC----------cCCCCHHHHHHHHHHHHHHH------HhCCC--C
Confidence 9998886642 110 000000 000000000 00122222222222221110 00000 2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHH
Q 047767 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYS 558 (666)
Q Consensus 481 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 558 (666)
.|+..+..|.-.|--.|++++|...|+.... ++|+.. .||.|...++...+.++|++.|.++. .++|. ++...
T Consensus 428 ~DpdvQ~~LGVLy~ls~efdraiDcf~~AL~--v~Pnd~~lWNRLGAtLAN~~~s~EAIsAY~rAL---qLqP~yVR~Ry 502 (579)
T KOG1125|consen 428 IDPDVQSGLGVLYNLSGEFDRAVDCFEAALQ--VKPNDYLLWNRLGATLANGNRSEEAISAYNRAL---QLQPGYVRVRY 502 (579)
T ss_pred CChhHHhhhHHHHhcchHHHHHHHHHHHHHh--cCCchHHHHHHhhHHhcCCcccHHHHHHHHHHH---hcCCCeeeeeh
Confidence 4455555666666667777777777777776 566544 67777777777777777777777776 34677 66666
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC---CC---------CCHHHHHHHHHHHHhhCChHHH
Q 047767 559 CMIDMLGRAGILDKAEELLQQTP---GG---------GDCMMWSSLLRSCRVHGNEIIG 605 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~---~~---------~~~~~~~~l~~~~~~~~~~~~a 605 (666)
.|.-.|...|.+++|.+.|-.+. .+ ++...|.+|=.++...++.|.+
T Consensus 503 NlgIS~mNlG~ykEA~~hlL~AL~mq~ks~~~~~~~~~se~iw~tLR~als~~~~~D~l 561 (579)
T KOG1125|consen 503 NLGISCMNLGAYKEAVKHLLEALSMQRKSRNHNKAPMASENIWQTLRLALSAMNRSDLL 561 (579)
T ss_pred hhhhhhhhhhhHHHHHHHHHHHHHhhhcccccccCCcchHHHHHHHHHHHHHcCCchHH
Confidence 67777777777777776654321 11 1235666666555555555533
No 132
>KOG1070 consensus rRNA processing protein Rrp5 [RNA processing and modification]
Probab=98.35 E-value=0.0001 Score=79.15 Aligned_cols=244 Identities=12% Similarity=0.072 Sum_probs=188.6
Q ss_pred ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHh-cCCC---chhhhhHHHHHhHhcCChhHHH
Q 047767 90 HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL-GFGL---NLYIGSPLVDLYMRMGPSVRAL 165 (666)
Q Consensus 90 ~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~---~~~~~~~ll~~~~~~g~~~~a~ 165 (666)
.++.|.++-+..+.. +-+...|..-+......++.+.|.++.++++.. ++.. -..+|.++++.-...|.-+...
T Consensus 1440 ~pesaeDferlvrss--PNSSi~WI~YMaf~LelsEiekAR~iaerAL~tIN~REeeEKLNiWiA~lNlEn~yG~eesl~ 1517 (1710)
T KOG1070|consen 1440 APESAEDFERLVRSS--PNSSILWIRYMAFHLELSEIEKARKIAERALKTINFREEEEKLNIWIAYLNLENAYGTEESLK 1517 (1710)
T ss_pred CCcCHHHHHHHHhcC--CCcchHHHHHHHHHhhhhhhHHHHHHHHHHhhhCCcchhHHHHHHHHHHHhHHHhhCcHHHHH
Confidence 344555555555542 335566888888889999999999999998863 2222 2347778888888888899999
Q ss_pred HhhccCCC-CC-cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCC
Q 047767 166 DLFDELPE-RN-LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWV 243 (666)
Q Consensus 166 ~~~~~~~~-~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 243 (666)
++|++..+ .| ...|..|...|.+.+.+++|.++|+.|.+. .......|...+..+.+.++-+.|..++..+++.-.-
T Consensus 1518 kVFeRAcqycd~~~V~~~L~~iy~k~ek~~~A~ell~~m~KK-F~q~~~vW~~y~~fLl~~ne~~aa~~lL~rAL~~lPk 1596 (1710)
T KOG1070|consen 1518 KVFERACQYCDAYTVHLKLLGIYEKSEKNDEADELLRLMLKK-FGQTRKVWIMYADFLLRQNEAEAARELLKRALKSLPK 1596 (1710)
T ss_pred HHHHHHHHhcchHHHHHHHHHHHHHhhcchhHHHHHHHHHHH-hcchhhHHHHHHHHHhcccHHHHHHHHHHHHHhhcch
Confidence 99999887 33 356899999999999999999999999886 3466778999999999999999999999999988412
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHhccCCC---CChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChh--hHHH
Q 047767 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPV---DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIR--SFVE 318 (666)
Q Consensus 244 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~--t~~~ 318 (666)
..........+..-.+.|+.+.++.+|+.... .-...|+..|..-.+.|+.+.+..+|++....++.|-.. .|..
T Consensus 1597 ~eHv~~IskfAqLEFk~GDaeRGRtlfEgll~ayPKRtDlW~VYid~eik~~~~~~vR~lfeRvi~l~l~~kkmKfffKk 1676 (1710)
T KOG1070|consen 1597 QEHVEFISKFAQLEFKYGDAERGRTLFEGLLSAYPKRTDLWSVYIDMEIKHGDIKYVRDLFERVIELKLSIKKMKFFFKK 1676 (1710)
T ss_pred hhhHHHHHHHHHHHhhcCCchhhHHHHHHHHhhCccchhHHHHHHHHHHccCCHHHHHHHHHHHHhcCCChhHhHHHHHH
Confidence 22667777888888999999999999998762 356789999999999999999999999999988877643 3444
Q ss_pred HHHHHhccCChhhHHHHH
Q 047767 319 FLNFASRTGNVYFGKQIH 336 (666)
Q Consensus 319 ll~~~~~~~~~~~a~~~~ 336 (666)
.|..=-..|+-..++.+-
T Consensus 1677 wLeyEk~~Gde~~vE~VK 1694 (1710)
T KOG1070|consen 1677 WLEYEKSHGDEKNVEYVK 1694 (1710)
T ss_pred HHHHHHhcCchhhHHHHH
Confidence 454444455554444443
No 133
>KOG3060 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.33 E-value=3e-05 Score=67.44 Aligned_cols=180 Identities=16% Similarity=0.149 Sum_probs=135.6
Q ss_pred CCCchH-HHHHHHHHHHhhCCHHHHHHHhccCCC--CCH---HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHH
Q 047767 448 FESNIA-VSCSLMDAYSRCGHIELSHQVFEKIPS--PNV---VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTF 521 (666)
Q Consensus 448 ~~~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~ 521 (666)
..++.. +|.-++-+....|+.+.|...++.+.. |.. .-...| -+-..|++++|+++++.+.+.. +.|.+++
T Consensus 47 ~g~e~w~l~EqV~IAAld~~~~~lAq~C~~~L~~~fp~S~RV~~lkam--~lEa~~~~~~A~e~y~~lL~dd-pt~~v~~ 123 (289)
T KOG3060|consen 47 LGDEIWTLYEQVFIAALDTGRDDLAQKCINQLRDRFPGSKRVGKLKAM--LLEATGNYKEAIEYYESLLEDD-PTDTVIR 123 (289)
T ss_pred cCchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhCCCChhHHHHHHH--HHHHhhchhhHHHHHHHHhccC-cchhHHH
Confidence 345544 455666677788999999999988764 332 222222 2445799999999999999865 4566678
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh
Q 047767 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH 599 (666)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 599 (666)
..-+...-..|+.-+|++-+....+. +..|.+.|.-+.+.|...|++++|.-.++++. ..| +...+..+...+...
T Consensus 124 KRKlAilka~GK~l~aIk~ln~YL~~--F~~D~EAW~eLaeiY~~~~~f~kA~fClEE~ll~~P~n~l~f~rlae~~Yt~ 201 (289)
T KOG3060|consen 124 KRKLAILKAQGKNLEAIKELNEYLDK--FMNDQEAWHELAEIYLSEGDFEKAAFCLEELLLIQPFNPLYFQRLAEVLYTQ 201 (289)
T ss_pred HHHHHHHHHcCCcHHHHHHHHHHHHH--hcCcHHHHHHHHHHHHhHhHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Confidence 77777777778878999988888875 67889999999999999999999999999876 677 566666677765544
Q ss_pred C---ChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh
Q 047767 600 G---NEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632 (666)
Q Consensus 600 ~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 632 (666)
| +.+.|.+.|.++++++|.+...++-+--++..
T Consensus 202 gg~eN~~~arkyy~~alkl~~~~~ral~GI~lc~~~ 237 (289)
T KOG3060|consen 202 GGAENLELARKYYERALKLNPKNLRALFGIYLCGSA 237 (289)
T ss_pred hhHHHHHHHHHHHHHHHHhChHhHHHHHHHHHHHHH
Confidence 4 78889999999999999776666655444433
No 134
>COG4783 Putative Zn-dependent protease, contains TPR repeats [General function prediction only]
Probab=98.30 E-value=7.5e-05 Score=71.58 Aligned_cols=117 Identities=16% Similarity=0.147 Sum_probs=73.7
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHHhhCChHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGD-CMMWSSLLRSCRVHGNEII 604 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~~~~~~~~ 604 (666)
....|++++|+..++.+... .|+ +..+....+.+.+.++.++|.+.++++. ..|+ ...+..+..++.+.|+..+
T Consensus 316 ~~~~~~~d~A~~~l~~L~~~---~P~N~~~~~~~~~i~~~~nk~~~A~e~~~kal~l~P~~~~l~~~~a~all~~g~~~e 392 (484)
T COG4783 316 TYLAGQYDEALKLLQPLIAA---QPDNPYYLELAGDILLEANKAKEAIERLKKALALDPNSPLLQLNLAQALLKGGKPQE 392 (484)
T ss_pred HHHhcccchHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCCccHHHHHHHHHHHhcCChHH
Confidence 33456666677666666643 344 4445555666667777777776666554 4443 4455556666666677667
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 605 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
|+..++.....+|+|+..|..|+.+|...|+..+|.....+..
T Consensus 393 ai~~L~~~~~~~p~dp~~w~~LAqay~~~g~~~~a~~A~AE~~ 435 (484)
T COG4783 393 AIRILNRYLFNDPEDPNGWDLLAQAYAELGNRAEALLARAEGY 435 (484)
T ss_pred HHHHHHHHhhcCCCCchHHHHHHHHHHHhCchHHHHHHHHHHH
Confidence 7777777666777777777777777777777666666655443
No 135
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=98.29 E-value=0.0047 Score=60.27 Aligned_cols=174 Identities=13% Similarity=0.091 Sum_probs=125.1
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCC-chHHHHHHHHHHHhhCCHHHHHH
Q 047767 395 NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFES-NIAVSCSLMDAYSRCGHIELSHQ 473 (666)
Q Consensus 395 ~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~A~~ 473 (666)
+.+...++++++...-..--..+|...++. ..+..-+..|+.+|..+.+.+..+ .+.+.++++..||. ++.+-|.+
T Consensus 346 ~~~~~~~~~~~ll~~~~~~~tLv~~~~mn~--irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~Afr 422 (656)
T KOG1914|consen 346 KEKKVHEIYNKLLKIEDIDLTLVYCQYMNF--IRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFR 422 (656)
T ss_pred hhhhhHHHHHHHHhhhccCCceehhHHHHH--HHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHH
Confidence 355666666666554322223445556666 666777788888888888877776 78888888887775 67888999
Q ss_pred HhccCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCCcHHHHHHHHHHhHHhh
Q 047767 474 VFEKIPS--PN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV--TFLCVLAGCNHSGMVKEGQLVFNSMKSVY 548 (666)
Q Consensus 474 ~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 548 (666)
+|+--.+ +| +.--...+.-+...|+-..+..+|++....++.||.. .|..++..=+..|+...+.++-+++...+
T Consensus 423 IFeLGLkkf~d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af 502 (656)
T KOG1914|consen 423 IFELGLKKFGDSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAF 502 (656)
T ss_pred HHHHHHHhcCCChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhc
Confidence 9986653 44 4444566777788899999999999999987777764 79999999899999999999988887764
Q ss_pred C--CCCCchHHHHHHHHHHhcCChH
Q 047767 549 G--IDADRQHYSCMIDMLGRAGILD 571 (666)
Q Consensus 549 ~--~~p~~~~~~~l~~~~~~~g~~~ 571 (666)
. ..+....-..+++.|.-.+...
T Consensus 503 ~~~qe~~~~~~~~~v~RY~~~d~~~ 527 (656)
T KOG1914|consen 503 PADQEYEGNETALFVDRYGILDLYP 527 (656)
T ss_pred chhhcCCCChHHHHHHHHhhccccc
Confidence 4 3444444455566666555543
No 136
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.27 E-value=2.3e-05 Score=65.67 Aligned_cols=115 Identities=12% Similarity=0.073 Sum_probs=65.2
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCC-CCH----HHHHHHHHHHHhhCChHH
Q 047767 531 SGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTPGG-GDC----MMWSSLLRSCRVHGNEII 604 (666)
Q Consensus 531 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~----~~~~~l~~~~~~~~~~~~ 604 (666)
.++.+.+...++.+...++-.|- ....-.+...+...|++++|...|+.+... |+. .....+...+...|++++
T Consensus 24 ~~~~~~~~~~~~~l~~~~~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~~~d~~l~~~a~l~LA~~~~~~~~~d~ 103 (145)
T PF09976_consen 24 AGDPAKAEAAAEQLAKDYPSSPYAALAALQLAKAAYEQGDYDEAKAALEKALANAPDPELKPLARLRLARILLQQGQYDE 103 (145)
T ss_pred CCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 55666666666666654111100 222333456666667777777776665522 222 233345555666777777
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 605 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
|+..++.. ...+-.+..+..+|.+|...|++++|+..|++.
T Consensus 104 Al~~L~~~-~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~A 144 (145)
T PF09976_consen 104 ALATLQQI-PDEAFKALAAELLGDIYLAQGDYDEARAAYQKA 144 (145)
T ss_pred HHHHHHhc-cCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHh
Confidence 77777552 233334556667777777777777777777653
No 137
>TIGR02552 LcrH_SycD type III secretion low calcium response chaperone LcrH/SycD. ScyD/LcrH contains three central tetratricopeptide-like repeats that are predicted to fold into an all-alpha-helical array.
Probab=98.26 E-value=2e-05 Score=65.52 Aligned_cols=114 Identities=8% Similarity=0.037 Sum_probs=90.6
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 047767 505 MLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-G 582 (666)
Q Consensus 505 ~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 582 (666)
.+++..+ ..|+.. ....+...+...|++++|.+.++.+... + +.+...+..+..+|...|++++|...++... .
T Consensus 5 ~~~~~l~--~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-p~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 80 (135)
T TIGR02552 5 TLKDLLG--LDSEQLEQIYALAYNLYQQGRYDEALKLFQLLAAY-D-PYNSRYWLGLAACCQMLKEYEEAIDAYALAAAL 80 (135)
T ss_pred hHHHHHc--CChhhHHHHHHHHHHHHHcccHHHHHHHHHHHHHh-C-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 4555555 566543 4566677788899999999999998764 2 3357888889999999999999999998764 3
Q ss_pred CC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcch
Q 047767 583 GG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622 (666)
Q Consensus 583 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 622 (666)
.| +...+..+...+...|++++|...++++++.+|++...
T Consensus 81 ~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~ 121 (135)
T TIGR02552 81 DPDDPRPYFHAAECLLALGEPESALKALDLAIEICGENPEY 121 (135)
T ss_pred CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccccchH
Confidence 44 67788888888999999999999999999999987553
No 138
>PF09976 TPR_21: Tetratricopeptide repeat; InterPro: IPR018704 This domain, found in various hypothetical prokaryotic proteins, has no known function.
Probab=98.25 E-value=4.6e-05 Score=63.90 Aligned_cols=125 Identities=15% Similarity=0.132 Sum_probs=93.4
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC--chHHH
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK----VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD--RQHYS 558 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~ 558 (666)
.|..++..+ ..++...+...++.+.+.. |+. .....+...+...|++++|...|+.+... ...|. .....
T Consensus 14 ~y~~~~~~~-~~~~~~~~~~~~~~l~~~~--~~s~ya~~A~l~lA~~~~~~g~~~~A~~~l~~~~~~-~~d~~l~~~a~l 89 (145)
T PF09976_consen 14 LYEQALQAL-QAGDPAKAEAAAEQLAKDY--PSSPYAALAALQLAKAAYEQGDYDEAKAALEKALAN-APDPELKPLARL 89 (145)
T ss_pred HHHHHHHHH-HCCCHHHHHHHHHHHHHHC--CCChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh-CCCHHHHHHHHH
Confidence 345555555 4788888988899998853 333 23444556788899999999999999986 42232 23455
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHH
Q 047767 559 CMIDMLGRAGILDKAEELLQQTPGGG-DCMMWSSLLRSCRVHGNEIIGRRVANILM 613 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 613 (666)
.|..++...|++++|+..++.....+ ....+...+.++...|++++|...|++++
T Consensus 90 ~LA~~~~~~~~~d~Al~~L~~~~~~~~~~~~~~~~Gdi~~~~g~~~~A~~~y~~Al 145 (145)
T PF09976_consen 90 RLARILLQQGQYDEALATLQQIPDEAFKALAAELLGDIYLAQGDYDEARAAYQKAL 145 (145)
T ss_pred HHHHHHHHcCCHHHHHHHHHhccCcchHHHHHHHHHHHHHHCCCHHHHHHHHHHhC
Confidence 67888999999999999998876444 55667778888999999999999998863
No 139
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=98.20 E-value=4e-06 Score=59.86 Aligned_cols=65 Identities=20% Similarity=0.288 Sum_probs=59.8
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC-CchHHHHHHHHHHhC
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG-EFEVSMQIRETALAR 649 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~~ 649 (666)
+...|..++..+...|++++|+..|+++++.+|+++.+|..++.+|...| ++++|++.+++..+.
T Consensus 2 ~a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l 67 (69)
T PF13414_consen 2 NAEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKL 67 (69)
T ss_dssp SHHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHc
Confidence 45678889999999999999999999999999999999999999999999 799999999987653
No 140
>KOG2053 consensus Mitochondrial inheritance and actin cytoskeleton organization protein [Cytoskeleton]
Probab=98.19 E-value=0.013 Score=61.04 Aligned_cols=158 Identities=9% Similarity=0.022 Sum_probs=91.3
Q ss_pred HHHHHHHHHHHcCChhH---HHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHH
Q 047767 485 CFTSIMNGYSRNGMGRE---ALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~---a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 560 (666)
+-+.|+..+.+.++... |+-+++.-.. ..|.. .+=..++..|+-.|-+..|.++|+.+--+ .+..|...|- +
T Consensus 438 av~~Lid~~rktnd~~~l~eaI~LLE~glt--~s~hnf~~KLlLiriY~~lGa~p~a~~~y~tLdIK-~IQ~DTlgh~-~ 513 (932)
T KOG2053|consen 438 AVNHLIDLWRKTNDLTDLFEAITLLENGLT--KSPHNFQTKLLLIRIYSYLGAFPDAYELYKTLDIK-NIQTDTLGHL-I 513 (932)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHhh--cCCccHHHHHHHHHHHHHhcCChhHHHHHHhcchH-HhhhccchHH-H
Confidence 45677788888887663 4444444444 33433 34456677788888888899888888666 6666655443 3
Q ss_pred HHHHHhcCChHHHHHHHHhCC---CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC----CCcchHHHHHHHHhhc
Q 047767 561 IDMLGRAGILDKAEELLQQTP---GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP----VDFAVYSQVSNFYSEI 633 (666)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~ 633 (666)
...+...|++..+...+.... ...-..+-..+..+| +.|.+..-.+...--..+.- .-..+-.......+..
T Consensus 514 ~~~~~t~g~~~~~s~~~~~~lkfy~~~~kE~~eyI~~AY-r~g~ySkI~em~~fr~rL~~S~q~~a~~VE~~~l~ll~~~ 592 (932)
T KOG2053|consen 514 FRRAETSGRSSFASNTFNEHLKFYDSSLKETPEYIALAY-RRGAYSKIPEMLAFRDRLMHSLQKWACRVENLQLSLLCNA 592 (932)
T ss_pred HHHHHhcccchhHHHHHHHHHHHHhhhhhhhHHHHHHHH-HcCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 455667788888877776543 111112222233444 44555554433322222211 1122334566777778
Q ss_pred CCchHHHHHHHHHH
Q 047767 634 GEFEVSMQIRETAL 647 (666)
Q Consensus 634 g~~~~A~~~~~~~~ 647 (666)
++.++-...++.|.
T Consensus 593 ~~~~q~~~~~~~~~ 606 (932)
T KOG2053|consen 593 DRGTQLLKLLESMK 606 (932)
T ss_pred CcHHHHHHHHhccc
Confidence 88887777776665
No 141
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=98.19 E-value=2e-05 Score=63.82 Aligned_cols=95 Identities=13% Similarity=0.004 Sum_probs=57.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC---cchHHHHH
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTP-GGGD----CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD---FAVYSQVS 627 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~ 627 (666)
++..++..+.+.|++++|.+.++.+. ..|+ ...+..+..++...|++++|...++++....|++ +.++..++
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 34455566666666666666666553 2222 2344455666666666677777777666666554 34566666
Q ss_pred HHHhhcCCchHHHHHHHHHHhCC
Q 047767 628 NFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 628 ~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.++...|+.++|.+.++.+.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~ 106 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRY 106 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHC
Confidence 66666677777777666666543
No 142
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=98.17 E-value=4.5e-06 Score=58.67 Aligned_cols=59 Identities=14% Similarity=0.173 Sum_probs=51.9
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+...+...|++++|++.|+++++..|.++.++..++.++...|++++|+.+|+++.+..
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~ 61 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELD 61 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 45678889999999999999999999999999999999999999999999999887643
No 143
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=98.16 E-value=1.8e-05 Score=61.03 Aligned_cols=94 Identities=17% Similarity=0.179 Sum_probs=79.3
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 633 (666)
.+..++..+...|++++|..+++.+. ..| +...+..+...+...+++++|.+.++++.+..|.++..+..++.++...
T Consensus 2 ~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (100)
T cd00189 2 ALLNLGNLYYKLGDYDEALEYYEKALELDPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKL 81 (100)
T ss_pred HHHHHHHHHHHHhcHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHH
Confidence 35667788888999999999998754 344 4467777888888899999999999999999999988999999999999
Q ss_pred CCchHHHHHHHHHHhC
Q 047767 634 GEFEVSMQIRETALAR 649 (666)
Q Consensus 634 g~~~~A~~~~~~~~~~ 649 (666)
|++++|...++...+.
T Consensus 82 ~~~~~a~~~~~~~~~~ 97 (100)
T cd00189 82 GKYEEALEAYEKALEL 97 (100)
T ss_pred HhHHHHHHHHHHHHcc
Confidence 9999999999877653
No 144
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=98.15 E-value=1.3e-05 Score=71.71 Aligned_cols=107 Identities=11% Similarity=0.012 Sum_probs=77.1
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEII 604 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 604 (666)
+.+.+++.+|+..|.+++. +.|+ ...|..=..+|.+.|.++.|++-.+... ..| ...+|..|..+|...|++++
T Consensus 91 ~m~~~~Y~eAv~kY~~AI~---l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 91 LMKNKDYQEAVDKYTEAIE---LDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHhhhHHHHHHHHHHHHh---cCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 4566777888888887774 4555 5556666777888888888887776544 455 45678888888888888888
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHhhcCCch
Q 047767 605 GRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637 (666)
Q Consensus 605 a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 637 (666)
|++.|+++++++|++.....+|-++-.+.+.-.
T Consensus 168 A~~aykKaLeldP~Ne~~K~nL~~Ae~~l~e~~ 200 (304)
T KOG0553|consen 168 AIEAYKKALELDPDNESYKSNLKIAEQKLNEPK 200 (304)
T ss_pred HHHHHHhhhccCCCcHHHHHHHHHHHHHhcCCC
Confidence 888888888888888777677766665555444
No 145
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=98.13 E-value=2.3e-05 Score=70.74 Aligned_cols=111 Identities=15% Similarity=0.106 Sum_probs=91.8
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh---CChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH---GNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 551 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
+-|...|..|...|...|+...|...|.... ..| +...+..+..++... .+..++..++++++..+|.|..+...
T Consensus 153 P~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~iral~l 232 (287)
T COG4235 153 PGDAEGWDLLGRAYMALGRASDALLAYRNALRLAGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIRALSL 232 (287)
T ss_pred CCCchhHHHHHHHHHHhcchhHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHHHHHH
Confidence 3448999999999999999999999998654 334 666777777764433 25778999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHhCCCCcCCCceEEE
Q 047767 626 VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSLIE 661 (666)
Q Consensus 626 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~ 661 (666)
|+..+...|++.+|...|+.|.+.....+|.-+.|+
T Consensus 233 LA~~afe~g~~~~A~~~Wq~lL~~lp~~~~rr~~ie 268 (287)
T COG4235 233 LAFAAFEQGDYAEAAAAWQMLLDLLPADDPRRSLIE 268 (287)
T ss_pred HHHHHHHcccHHHHHHHHHHHHhcCCCCCchHHHHH
Confidence 999999999999999999999998887777665543
No 146
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.12 E-value=4.1e-06 Score=50.20 Aligned_cols=35 Identities=43% Similarity=0.620 Sum_probs=29.0
Q ss_pred hhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCc
Q 047767 76 VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESA 110 (666)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~ 110 (666)
.+||.+|.+|++.|++++|.++|++|.+.|++||.
T Consensus 1 ~~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~~ 35 (35)
T TIGR00756 1 VTYNTLIDGLCKAGRVEEALELFKEMLERGIEPDV 35 (35)
T ss_pred CcHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCCC
Confidence 36888888888888888888888888888888863
No 147
>PF09295 ChAPs: ChAPs (Chs5p-Arf1p-binding proteins); InterPro: IPR015374 ChAPs (Chs5p-Arf1p-binding proteins) are required for the export of specialised cargo from the Golgi. They physically interact with Chs3, Chs5 and the small GTPase Arf1, and they also form interactions with each other [].
Probab=98.12 E-value=6.5e-05 Score=72.86 Aligned_cols=126 Identities=11% Similarity=0.039 Sum_probs=106.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCC
Q 047767 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSG 532 (666)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g 532 (666)
....|+..+...++++.|..+|+++.+.++.....+++.+...++-.+|++++++..+. .| +......-...|.+.+
T Consensus 171 Lv~~Ll~~l~~t~~~~~ai~lle~L~~~~pev~~~LA~v~l~~~~E~~AI~ll~~aL~~--~p~d~~LL~~Qa~fLl~k~ 248 (395)
T PF09295_consen 171 LVDTLLKYLSLTQRYDEAIELLEKLRERDPEVAVLLARVYLLMNEEVEAIRLLNEALKE--NPQDSELLNLQAEFLLSKK 248 (395)
T ss_pred HHHHHHHHHhhcccHHHHHHHHHHHHhcCCcHHHHHHHHHHhcCcHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHhcC
Confidence 34456777888899999999999999866666777889999999999999999999873 44 5456666667789999
Q ss_pred cHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 047767 533 MVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584 (666)
Q Consensus 533 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 584 (666)
+++.|.++.+++.. ..|+ ..+|..|+.+|...|++++|+..++.++..+
T Consensus 249 ~~~lAL~iAk~av~---lsP~~f~~W~~La~~Yi~~~d~e~ALlaLNs~Pm~~ 298 (395)
T PF09295_consen 249 KYELALEIAKKAVE---LSPSEFETWYQLAECYIQLGDFENALLALNSCPMLT 298 (395)
T ss_pred CHHHHHHHHHHHHH---hCchhHHHHHHHHHHHHhcCCHHHHHHHHhcCcCCC
Confidence 99999999999985 4677 7799999999999999999999999888433
No 148
>TIGR00756 PPR pentatricopeptide repeat domain (PPR motif). This family has a similar consensus to the TPR domain (tetratricopeptide), pfam pfam00515, a 33-residue repeat. It is predicted to form a pair of antiparallel helices similar to that of TPR.
Probab=98.11 E-value=5e-06 Score=49.84 Aligned_cols=33 Identities=30% Similarity=0.753 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 517 (666)
+||++|.+|++.|++++|.++|++|.+.|+.||
T Consensus 2 ~~n~li~~~~~~~~~~~a~~~~~~M~~~g~~p~ 34 (35)
T TIGR00756 2 TYNTLIDGLCKAGRVEEALELFKEMLERGIEPD 34 (35)
T ss_pred cHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCC
Confidence 688899999999999999999999998888887
No 149
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=98.09 E-value=2.3e-06 Score=63.88 Aligned_cols=78 Identities=12% Similarity=0.157 Sum_probs=47.0
Q ss_pred cCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHH
Q 047767 567 AGILDKAEELLQQTP-GGG---DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 567 ~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
.|++++|+.+++++. ..| +...+..+...+.+.|++++|..++++ .+.+|.++.....++.+|...|++++|+++
T Consensus 2 ~~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~-~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~ 80 (84)
T PF12895_consen 2 QGNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQK-LKLDPSNPDIHYLLARCLLKLGKYEEAIKA 80 (84)
T ss_dssp TT-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHC-HTHHHCHHHHHHHHHHHHHHTT-HHHHHHH
T ss_pred CccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHH-hCCCCCCHHHHHHHHHHHHHhCCHHHHHHH
Confidence 355666666665544 122 334444566666667777777777766 556666666666667777777777777777
Q ss_pred HHH
Q 047767 643 RET 645 (666)
Q Consensus 643 ~~~ 645 (666)
+++
T Consensus 81 l~~ 83 (84)
T PF12895_consen 81 LEK 83 (84)
T ss_dssp HHH
T ss_pred Hhc
Confidence 664
No 150
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.07 E-value=5.8e-06 Score=49.08 Aligned_cols=33 Identities=45% Similarity=0.775 Sum_probs=26.2
Q ss_pred hhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCC
Q 047767 76 VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKE 108 (666)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~ 108 (666)
.+||.+|.+|++.|+++.|.++|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 577888888888888888888888888877776
No 151
>PF13812 PPR_3: Pentatricopeptide repeat domain
Probab=98.05 E-value=7.5e-06 Score=48.59 Aligned_cols=33 Identities=18% Similarity=0.481 Sum_probs=26.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 047767 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP 516 (666)
Q Consensus 484 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p 516 (666)
.+|+.++.+|++.|+++.|..+|++|.+.|++|
T Consensus 2 ~ty~~ll~a~~~~g~~~~a~~~~~~M~~~gv~P 34 (34)
T PF13812_consen 2 HTYNALLRACAKAGDPDAALQLFDEMKEQGVKP 34 (34)
T ss_pred cHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCC
Confidence 478888888888888888888888888888776
No 152
>KOG3081 consensus Vesicle coat complex COPI, epsilon subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.02 E-value=0.0023 Score=56.52 Aligned_cols=105 Identities=10% Similarity=0.129 Sum_probs=54.4
Q ss_pred hCCHHHHHHHhccCCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHH
Q 047767 465 CGHIELSHQVFEKIPS-PNVVCFTSIMNGYSR----NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQL 539 (666)
Q Consensus 465 ~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~ 539 (666)
..+.+.|.+.++.|.+ .+-.+.+.|..++.+ .+.+.+|.-+|++|.++ ..|+..+.+....++...|++++|..
T Consensus 150 ~~r~d~A~~~lk~mq~ided~tLtQLA~awv~la~ggek~qdAfyifeE~s~k-~~~T~~llnG~Av~~l~~~~~eeAe~ 228 (299)
T KOG3081|consen 150 MHRFDLAEKELKKMQQIDEDATLTQLAQAWVKLATGGEKIQDAFYIFEELSEK-TPPTPLLLNGQAVCHLQLGRYEEAES 228 (299)
T ss_pred HHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHhccchhhhhHHHHHHHHhcc-cCCChHHHccHHHHHHHhcCHHHHHH
Confidence 3444555555555554 223344444444432 23455666666666553 45555666666666666666666666
Q ss_pred HHHHhHHhhCCCCCchHHHHHHHHHHhcCChHH
Q 047767 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572 (666)
Q Consensus 540 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 572 (666)
+++....+ ..-++.+...++-+-...|...+
T Consensus 229 lL~eaL~k--d~~dpetL~Nliv~a~~~Gkd~~ 259 (299)
T KOG3081|consen 229 LLEEALDK--DAKDPETLANLIVLALHLGKDAE 259 (299)
T ss_pred HHHHHHhc--cCCCHHHHHHHHHHHHHhCCChH
Confidence 66666654 22334555555544444554433
No 153
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=98.02 E-value=4.4e-05 Score=74.57 Aligned_cols=107 Identities=8% Similarity=-0.036 Sum_probs=90.0
Q ss_pred HHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhC
Q 047767 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHG 600 (666)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 600 (666)
-...+...|++++|+..|+++.+. .|+ ...|..+..+|.+.|++++|+..++++. ..| +...|..++.+|...|
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~~---~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l~P~~~~a~~~lg~~~~~lg 84 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAIDL---DPNNAELYADRAQANIKLGNFTEAVADANKAIELDPSLAKAYLRKGTACMKLE 84 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhC
Confidence 345567789999999999999864 555 7788889999999999999999998765 445 6778888999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc
Q 047767 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633 (666)
Q Consensus 601 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 633 (666)
++++|+..|+++++++|+++.....+..+..+.
T Consensus 85 ~~~eA~~~~~~al~l~P~~~~~~~~l~~~~~kl 117 (356)
T PLN03088 85 EYQTAKAALEKGASLAPGDSRFTKLIKECDEKI 117 (356)
T ss_pred CHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHH
Confidence 999999999999999999988877776665444
No 154
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.00 E-value=0.014 Score=55.61 Aligned_cols=105 Identities=10% Similarity=0.091 Sum_probs=58.4
Q ss_pred HHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHH
Q 047767 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535 (666)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 535 (666)
+..+.-+...|+...|.++-.+..-|+-..|-..+.+++..++|++-..+... .-. +.-|..++.+|.+.|+..
T Consensus 181 ~~Ti~~li~~~~~k~A~kl~k~Fkv~dkrfw~lki~aLa~~~~w~eL~~fa~s----kKs--PIGyepFv~~~~~~~~~~ 254 (319)
T PF04840_consen 181 NDTIRKLIEMGQEKQAEKLKKEFKVPDKRFWWLKIKALAENKDWDELEKFAKS----KKS--PIGYEPFVEACLKYGNKK 254 (319)
T ss_pred HHHHHHHHHCCCHHHHHHHHHHcCCcHHHHHHHHHHHHHhcCCHHHHHHHHhC----CCC--CCChHHHHHHHHHCCCHH
Confidence 33344455556666666666666556666666666666666666655544321 112 244566666666666666
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 047767 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577 (666)
Q Consensus 536 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (666)
+|..++.++. +..-+..|.+.|++.+|.+.-
T Consensus 255 eA~~yI~k~~-----------~~~rv~~y~~~~~~~~A~~~A 285 (319)
T PF04840_consen 255 EASKYIPKIP-----------DEERVEMYLKCGDYKEAAQEA 285 (319)
T ss_pred HHHHHHHhCC-----------hHHHHHHHHHCCCHHHHHHHH
Confidence 6666665431 133455566666666665543
No 155
>PRK14720 transcript cleavage factor/unknown domain fusion protein; Provisional
Probab=97.96 E-value=0.003 Score=67.68 Aligned_cols=174 Identities=9% Similarity=0.073 Sum_probs=114.6
Q ss_pred HHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCCh
Q 047767 286 SIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVI 365 (666)
Q Consensus 286 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 365 (666)
..+....++.-+..+...|... .-+...+..+..+|.+.|+.+++..+++.+.+.. |.++.+.+.++..|... ++
T Consensus 91 ~~~~~~~~~~~ve~~~~~i~~~--~~~k~Al~~LA~~Ydk~g~~~ka~~~yer~L~~D--~~n~~aLNn~AY~~ae~-dL 165 (906)
T PRK14720 91 DSFSQNLKWAIVEHICDKILLY--GENKLALRTLAEAYAKLNENKKLKGVWERLVKAD--RDNPEIVKKLATSYEEE-DK 165 (906)
T ss_pred hhcccccchhHHHHHHHHHHhh--hhhhHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHh-hH
Confidence 3333344443333333444332 2233355666667777777777777777777765 44899999999999999 99
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHH
Q 047767 366 ESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK 445 (666)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~ 445 (666)
++|...+.+ .+..+...+++.++.++|.++... .|+...+ -..+.+.+..
T Consensus 166 ~KA~~m~~K-----------AV~~~i~~kq~~~~~e~W~k~~~~--~~~d~d~-----------------f~~i~~ki~~ 215 (906)
T PRK14720 166 EKAITYLKK-----------AIYRFIKKKQYVGIEEIWSKLVHY--NSDDFDF-----------------FLRIERKVLG 215 (906)
T ss_pred HHHHHHHHH-----------HHHHHHhhhcchHHHHHHHHHHhc--CcccchH-----------------HHHHHHHHHh
Confidence 999987643 455588888999999999999875 3333322 1222222322
Q ss_pred -hCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHH
Q 047767 446 -SGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYS 494 (666)
Q Consensus 446 -~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~ 494 (666)
.+..--..++-.+-..|-...+++++..+|+.+.+ .|.....-++.+|.
T Consensus 216 ~~~~~~~~~~~~~l~~~y~~~~~~~~~i~iLK~iL~~~~~n~~a~~~l~~~y~ 268 (906)
T PRK14720 216 HREFTRLVGLLEDLYEPYKALEDWDEVIYILKKILEHDNKNNKAREELIRFYK 268 (906)
T ss_pred hhccchhHHHHHHHHHHHhhhhhhhHHHHHHHHHHhcCCcchhhHHHHHHHHH
Confidence 24445566666777888889999999999998874 45556666777765
No 156
>PRK15331 chaperone protein SicA; Provisional
Probab=97.95 E-value=6.6e-05 Score=61.59 Aligned_cols=100 Identities=14% Similarity=0.005 Sum_probs=81.5
Q ss_pred CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 549 GIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 549 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
|++++ ....-....-+-..|++++|..+|+-+. ..-+...|..|...+...+++++|+..|..+..++++||.+++.
T Consensus 31 gis~~~le~iY~~Ay~~y~~Gk~~eA~~~F~~L~~~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l~~~dp~p~f~ 110 (165)
T PRK15331 31 GIPQDMMDGLYAHAYEFYNQGRLDEAETFFRFLCIYDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTLLKNDYRPVFF 110 (165)
T ss_pred CCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCccch
Confidence 44444 2223344455568999999999998654 33377788888888889999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHh
Q 047767 626 VSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 626 l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.+.+|...|+.+.|...|+...+
T Consensus 111 agqC~l~l~~~~~A~~~f~~a~~ 133 (165)
T PRK15331 111 TGQCQLLMRKAAKARQCFELVNE 133 (165)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHh
Confidence 99999999999999999987766
No 157
>KOG0553 consensus TPR repeat-containing protein [General function prediction only]
Probab=97.95 E-value=3.1e-05 Score=69.42 Aligned_cols=88 Identities=11% Similarity=0.141 Sum_probs=79.6
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchH
Q 047767 561 IDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638 (666)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 638 (666)
..-+.+.+++.+|+..|.+.. ..| |.+.|..-..+|.+.|.++.|++-.+.++.++|....+|..|+.+|...|++++
T Consensus 88 GN~~m~~~~Y~eAv~kY~~AI~l~P~nAVyycNRAAAy~~Lg~~~~AVkDce~Al~iDp~yskay~RLG~A~~~~gk~~~ 167 (304)
T KOG0553|consen 88 GNKLMKNKDYQEAVDKYTEAIELDPTNAVYYCNRAAAYSKLGEYEDAVKDCESALSIDPHYSKAYGRLGLAYLALGKYEE 167 (304)
T ss_pred HHHHHHhhhHHHHHHHHHHHHhcCCCcchHHHHHHHHHHHhcchHHHHHHHHHHHhcChHHHHHHHHHHHHHHccCcHHH
Confidence 345678899999999998755 565 888999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q 047767 639 SMQIRETALA 648 (666)
Q Consensus 639 A~~~~~~~~~ 648 (666)
|++.|++..+
T Consensus 168 A~~aykKaLe 177 (304)
T KOG0553|consen 168 AIEAYKKALE 177 (304)
T ss_pred HHHHHHhhhc
Confidence 9999987654
No 158
>TIGR02795 tol_pal_ybgF tol-pal system protein YbgF. Members of this protein family are the product of one of seven genes regularly clustered in operons to encode the proteins of the tol-pal system, which is critical for maintaining the integrity of the bacterial outer membrane. The gene for this periplasmic protein has been designated orf2 and ybgF. All members of the seed alignment were from unique tol-pal gene regions from completed bacterial genomes. The architecture of this protein is a signal sequence, a low-complexity region usually rich in Asn and Gln, a well-conserved region with tandem repeats that resemble the tetratricopeptide (TPR) repeat, involved in protein-protein interaction.
Probab=97.94 E-value=0.00014 Score=58.77 Aligned_cols=105 Identities=10% Similarity=-0.038 Sum_probs=73.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGD----CMMWSSLL 593 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~ 593 (666)
++..+...+...|++++|.+.++.+.+.+.-.|. ...+..++.++.+.|++++|...++.+. ..|+ ...+..+.
T Consensus 4 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~~~ 83 (119)
T TIGR02795 4 AYYDAALLVLKAGDYADAIQAFQAFLKKYPKSTYAPNAHYWLGEAYYAQGKYADAAKAFLAVVKKYPKSPKAPDALLKLG 83 (119)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHHHhhccHHHHHHHHHHHHHHCCCCCcccHHHHHHH
Confidence 3455566677778888888888887765111111 3456667888888888888888887654 2332 45667777
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCcchHH
Q 047767 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 624 (666)
..+...|+.++|...++++++..|+++.+..
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~ 114 (119)
T TIGR02795 84 MSLQELGDKEKAKATLQQVIKRYPGSSAAKL 114 (119)
T ss_pred HHHHHhCChHHHHHHHHHHHHHCcCChhHHH
Confidence 7888888999999999999999888765443
No 159
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.91 E-value=0.00014 Score=63.14 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=67.6
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---C-HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG---D-CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
...+..++..|...|++++|...+++.. ..| + ...+..+...+...|++++|+..++++++..|.++..+..++.
T Consensus 35 a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 114 (172)
T PRK02603 35 AFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALELNPKQPSALNNIAV 114 (172)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHH
Confidence 4456666677777777777777777554 112 1 3567777777888888888888888888888888888888888
Q ss_pred HHhhcCC--------------chHHHHHHHHHHhC
Q 047767 629 FYSEIGE--------------FEVSMQIRETALAR 649 (666)
Q Consensus 629 ~~~~~g~--------------~~~A~~~~~~~~~~ 649 (666)
+|...|+ +++|.++++++...
T Consensus 115 ~~~~~g~~~~a~~~~~~A~~~~~~A~~~~~~a~~~ 149 (172)
T PRK02603 115 IYHKRGEKAEEAGDQDEAEALFDKAAEYWKQAIRL 149 (172)
T ss_pred HHHHcCChHhHhhCHHHHHHHHHHHHHHHHHHHhh
Confidence 8877776 45566666555543
No 160
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.91 E-value=0.0008 Score=55.71 Aligned_cols=133 Identities=8% Similarity=-0.033 Sum_probs=99.2
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHHHH
Q 047767 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG---DCMMW 589 (666)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~ 589 (666)
+.|....-..|..++...|+..+|...|++...- -+.-|....-.+.++....+++.+|...++++- -+| .+.+.
T Consensus 85 ~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG-~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~~ 163 (251)
T COG4700 85 IAPTVQNRYRLANALAELGRYHEAVPHYQQALSG-IFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDGH 163 (251)
T ss_pred hchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhcc-ccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCch
Confidence 5677666777888888888888888888888763 334457777788888888888888888888654 233 34455
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
..+.+++...|.++.|+..|+.++...|. +......+..+.++|+..+|..-+..+.+
T Consensus 164 Ll~aR~laa~g~~a~Aesafe~a~~~ypg-~~ar~~Y~e~La~qgr~~ea~aq~~~v~d 221 (251)
T COG4700 164 LLFARTLAAQGKYADAESAFEVAISYYPG-PQARIYYAEMLAKQGRLREANAQYVAVVD 221 (251)
T ss_pred HHHHHHHHhcCCchhHHHHHHHHHHhCCC-HHHHHHHHHHHHHhcchhHHHHHHHHHHH
Confidence 56777888888888899999988888884 56666777888888887777665554443
No 161
>KOG1914 consensus mRNA cleavage and polyadenylation factor I complex, subunit RNA14 [RNA processing and modification]
Probab=97.89 E-value=0.03 Score=54.92 Aligned_cols=174 Identities=11% Similarity=0.086 Sum_probs=126.9
Q ss_pred HHHHHHHhccCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHHHHHHH
Q 047767 468 IELSHQVFEKIPS----PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEGQLVFN 542 (666)
Q Consensus 468 ~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~ 542 (666)
.+.....+++... .-..+|..+++.-.+..-...|..+|.+..+.+..+ +...+++++.-++. ++..-|.++|+
T Consensus 347 ~~~~~~~~~~ll~~~~~~~tLv~~~~mn~irR~eGlkaaR~iF~kaR~~~r~~hhVfVa~A~mEy~cs-kD~~~AfrIFe 425 (656)
T KOG1914|consen 347 EKKVHEIYNKLLKIEDIDLTLVYCQYMNFIRRAEGLKAARKIFKKAREDKRTRHHVFVAAALMEYYCS-KDKETAFRIFE 425 (656)
T ss_pred hhhhHHHHHHHHhhhccCCceehhHHHHHHHHhhhHHHHHHHHHHHhhccCCcchhhHHHHHHHHHhc-CChhHHHHHHH
Confidence 3444444444432 233467788888888888999999999999988888 55678888887765 68899999999
Q ss_pred HhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG---G--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 543 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
.=..++| -++.-....++.+...++-..|..+|++.... | ....|..++.--..-|+...+.++-++.....|
T Consensus 426 LGLkkf~--d~p~yv~~YldfL~~lNdd~N~R~LFEr~l~s~l~~~ks~~Iw~r~l~yES~vGdL~si~~lekR~~~af~ 503 (656)
T KOG1914|consen 426 LGLKKFG--DSPEYVLKYLDFLSHLNDDNNARALFERVLTSVLSADKSKEIWDRMLEYESNVGDLNSILKLEKRRFTAFP 503 (656)
T ss_pred HHHHhcC--CChHHHHHHHHHHHHhCcchhHHHHHHHHHhccCChhhhHHHHHHHHHHHHhcccHHHHHHHHHHHHHhcc
Confidence 8877643 33455567788889999999999999987633 3 457999999988899999999999999888777
Q ss_pred CCc----chHHHHHHHHhhcCCchHHHHHHH
Q 047767 618 VDF----AVYSQVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 618 ~~~----~~~~~l~~~~~~~g~~~~A~~~~~ 644 (666)
.+- ..-..++.-|--.+.+..-..-++
T Consensus 504 ~~qe~~~~~~~~~v~RY~~~d~~~c~~~elk 534 (656)
T KOG1914|consen 504 ADQEYEGNETALFVDRYGILDLYPCSLDELK 534 (656)
T ss_pred hhhcCCCChHHHHHHHHhhcccccccHHHHH
Confidence 331 233445566666666654444443
No 162
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.87 E-value=1.8e-05 Score=56.28 Aligned_cols=54 Identities=11% Similarity=0.161 Sum_probs=45.3
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
...|++++|++.++++++.+|+++.++..++.+|.+.|++++|.++++++....
T Consensus 2 l~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~ 55 (68)
T PF14559_consen 2 LKQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQD 55 (68)
T ss_dssp HHTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGG
T ss_pred hhccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 467889999999999999999999999999999999999999999887666543
No 163
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.87 E-value=4.6e-05 Score=55.05 Aligned_cols=59 Identities=19% Similarity=0.174 Sum_probs=51.8
Q ss_pred HHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
...+.+.+++++|.++++++++.+|+++..+...|.++...|++++|.+.++...+.+.
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p 60 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSP 60 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCC
Confidence 34678889999999999999999999999999999999999999999999998887655
No 164
>PLN03088 SGT1, suppressor of G2 allele of SKP1; Provisional
Probab=97.87 E-value=0.00018 Score=70.29 Aligned_cols=94 Identities=13% Similarity=-0.020 Sum_probs=73.0
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHh
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGR 566 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~ 566 (666)
....+...|++++|+..|++.++ ..|+. ..|..+..++...|++++|+..++++... .|+ ...|..+..+|..
T Consensus 8 ~a~~a~~~~~~~~Ai~~~~~Al~--~~P~~~~a~~~~a~~~~~~g~~~eAl~~~~~Al~l---~P~~~~a~~~lg~~~~~ 82 (356)
T PLN03088 8 KAKEAFVDDDFALAVDLYTQAID--LDPNNAELYADRAQANIKLGNFTEAVADANKAIEL---DPSLAKAYLRKGTACMK 82 (356)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHH
Confidence 34556678899999999999888 45544 46777778888899999999999988854 555 7778888888999
Q ss_pred cCChHHHHHHHHhCC-CCCCHH
Q 047767 567 AGILDKAEELLQQTP-GGGDCM 587 (666)
Q Consensus 567 ~g~~~~A~~~~~~~~-~~~~~~ 587 (666)
.|++++|+..|++.. ..|+..
T Consensus 83 lg~~~eA~~~~~~al~l~P~~~ 104 (356)
T PLN03088 83 LEEYQTAKAALEKGASLAPGDS 104 (356)
T ss_pred hCCHHHHHHHHHHHHHhCCCCH
Confidence 999999999988755 455433
No 165
>PF13432 TPR_16: Tetratricopeptide repeat; PDB: 3CVP_A 3CVL_A 3CVQ_A 3CV0_A 2GW1_B 3CVN_A 3QKY_A 2PL2_B.
Probab=97.82 E-value=4.3e-05 Score=53.65 Aligned_cols=61 Identities=20% Similarity=0.127 Sum_probs=51.3
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCc
Q 047767 560 MIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
++..+...|++++|++.|+.+. ..| +...|..+...+...|++++|...++++++.+|++|
T Consensus 3 ~a~~~~~~g~~~~A~~~~~~~l~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~a~~~~P~~p 65 (65)
T PF13432_consen 3 LARALYQQGDYDEAIAAFEQALKQDPDNPEAWYLLGRILYQQGRYDEALAYYERALELDPDNP 65 (65)
T ss_dssp HHHHHHHCTHHHHHHHHHHHHHCCSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-H
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCC
Confidence 5677889999999999999865 445 667888899999999999999999999999999875
No 166
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.79 E-value=0.00071 Score=69.10 Aligned_cols=140 Identities=11% Similarity=0.043 Sum_probs=91.0
Q ss_pred CCCHHHHHHHHHHHHHcC-----ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcC--------CCcHHHHHHHHHHhH
Q 047767 480 SPNVVCFTSIMNGYSRNG-----MGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNH--------SGMVKEGQLVFNSMK 545 (666)
Q Consensus 480 ~~~~~~~~~li~~~~~~~-----~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~--------~g~~~~a~~~~~~~~ 545 (666)
..+...|...+++..... +...|..+|++.++ ..|+.. .|..+..++.. ..++..+.+..++..
T Consensus 334 ~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~--ldP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~~a~ 411 (517)
T PRK10153 334 PHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILK--SEPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELDNIV 411 (517)
T ss_pred CCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhh
Confidence 356777777777754322 36688999999998 678764 34433322211 112334444444433
Q ss_pred HhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 546 SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 546 ~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
.......++..|..+.-.+...|++++|...+++.. ..|+...|..++..+...|+.++|.+.+++++.++|.++.
T Consensus 412 al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~ps~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P~~pt 488 (517)
T PRK10153 412 ALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEMSWLNYVLLGKVYELKGDNRLAADAYSTAFNLRPGENT 488 (517)
T ss_pred hcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCch
Confidence 221123345677777766777788888888888755 5667777888888888888888888888888888887764
No 167
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=97.79 E-value=1.4e-05 Score=46.78 Aligned_cols=33 Identities=24% Similarity=0.546 Sum_probs=31.0
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhhcCCchHHHH
Q 047767 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641 (666)
Q Consensus 609 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 641 (666)
|+++++++|+++.+|..|+.+|...|++++|++
T Consensus 2 y~kAie~~P~n~~a~~nla~~~~~~g~~~~A~~ 34 (34)
T PF13431_consen 2 YKKAIELNPNNAEAYNNLANLYLNQGDYEEAIA 34 (34)
T ss_pred hHHHHHHCCCCHHHHHHHHHHHHHCcCHHhhcC
Confidence 789999999999999999999999999999963
No 168
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.78 E-value=0.00018 Score=62.22 Aligned_cols=93 Identities=11% Similarity=-0.045 Sum_probs=75.4
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
...|..++..+...|++++|+..+++.. ..| ...+|..+...+...|++++|+..++++++..|.....+..++.
T Consensus 35 a~~~~~~g~~~~~~g~~~~A~~~~~~al~l~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~ 114 (168)
T CHL00033 35 AFTYYRDGMSAQSEGEYAEALQNYYEAMRLEIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAV 114 (168)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhccccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHH
Confidence 5667777888888899999999888763 222 23578888899999999999999999999999999998888998
Q ss_pred HHh-------hcCCchHHHHHHHHH
Q 047767 629 FYS-------EIGEFEVSMQIRETA 646 (666)
Q Consensus 629 ~~~-------~~g~~~~A~~~~~~~ 646 (666)
++. ..|++++|...+++.
T Consensus 115 i~~~~~~~~~~~g~~~~A~~~~~~a 139 (168)
T CHL00033 115 ICHYRGEQAIEQGDSEIAEAWFDQA 139 (168)
T ss_pred HHHHhhHHHHHcccHHHHHHHHHHH
Confidence 888 788888666666544
No 169
>PRK02603 photosystem I assembly protein Ycf3; Provisional
Probab=97.75 E-value=0.00069 Score=58.75 Aligned_cols=130 Identities=10% Similarity=0.068 Sum_probs=85.0
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC--HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHH
Q 047767 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD--KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYS 558 (666)
Q Consensus 482 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~ 558 (666)
....+..+...+...|++++|...+++..+.+..|+ ...+..+...+.+.|++++|...+++..+. .|+ ...+.
T Consensus 34 ~a~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 110 (172)
T PRK02603 34 EAFVYYRDGMSAQADGEYAEALENYEEALKLEEDPNDRSYILYNMGIIYASNGEHDKALEYYHQALEL---NPKQPSALN 110 (172)
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcccHHHHH
Confidence 344566677777778888888888888776432222 245666777777888888888888877753 444 55566
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCC
Q 047767 559 CMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 635 (666)
.+..+|...|+...+..-++.. ...+++|.+.++++++.+|++ +..++..+...|+
T Consensus 111 ~lg~~~~~~g~~~~a~~~~~~A------------------~~~~~~A~~~~~~a~~~~p~~---~~~~~~~~~~~~~ 166 (172)
T PRK02603 111 NIAVIYHKRGEKAEEAGDQDEA------------------EALFDKAAEYWKQAIRLAPNN---YIEAQNWLKTTGR 166 (172)
T ss_pred HHHHHHHHcCChHhHhhCHHHH------------------HHHHHHHHHHHHHHHhhCchh---HHHHHHHHHhcCc
Confidence 6677777777665554333221 123677899999999999876 4445554544443
No 170
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.74 E-value=3.8e-05 Score=44.33 Aligned_cols=30 Identities=50% Similarity=0.700 Sum_probs=21.7
Q ss_pred hHHHHHHHhhcCCChhhHHHHHHHHHhCCC
Q 047767 77 TYNLLISGCGKFRHPKQALYLYDEMVSHGI 106 (666)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~ 106 (666)
+||.+|++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 577777777777777777777777776653
No 171
>PF12895 Apc3: Anaphase-promoting complex, cyclosome, subunit 3; PDB: 3KAE_D 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2XPI_A 3ULQ_A.
Probab=97.71 E-value=9.1e-05 Score=55.17 Aligned_cols=80 Identities=13% Similarity=0.040 Sum_probs=35.9
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCChHHHHHHHH
Q 047767 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG-DCMMWSSLLRSCRVHGNEIIGRRVAN 610 (666)
Q Consensus 532 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~ 610 (666)
|+++.|+.+++++.+.....|+...+..++.+|.+.|++++|+++++.....| +....-.++.++...|++++|+++++
T Consensus 3 ~~y~~Ai~~~~k~~~~~~~~~~~~~~~~la~~~~~~~~y~~A~~~~~~~~~~~~~~~~~~l~a~~~~~l~~y~eAi~~l~ 82 (84)
T PF12895_consen 3 GNYENAIKYYEKLLELDPTNPNSAYLYNLAQCYFQQGKYEEAIELLQKLKLDPSNPDIHYLLARCLLKLGKYEEAIKALE 82 (84)
T ss_dssp T-HHHHHHHHHHHHHHHCGTHHHHHHHHHHHHHHHTTHHHHHHHHHHCHTHHHCHHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHCCCChhHHHHHHHHHHHHHCCCHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCCHHHHHHHHh
Confidence 45555555555555441111123333345555555555555555555522222 12222233444555555555555555
Q ss_pred H
Q 047767 611 I 611 (666)
Q Consensus 611 ~ 611 (666)
+
T Consensus 83 ~ 83 (84)
T PF12895_consen 83 K 83 (84)
T ss_dssp H
T ss_pred c
Confidence 4
No 172
>PF04840 Vps16_C: Vps16, C-terminal region; InterPro: IPR006925 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.69 E-value=0.031 Score=53.29 Aligned_cols=108 Identities=12% Similarity=0.164 Sum_probs=83.1
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (666)
+.+..+.-|...|+...|.++-.+. ++ |+...|...+.+|+..|+|++-.++... +..+..|..++.+|.+.
T Consensus 179 Sl~~Ti~~li~~~~~k~A~kl~k~F----kv-~dkrfw~lki~aLa~~~~w~eL~~fa~s---kKsPIGyepFv~~~~~~ 250 (319)
T PF04840_consen 179 SLNDTIRKLIEMGQEKQAEKLKKEF----KV-PDKRFWWLKIKALAENKDWDELEKFAKS---KKSPIGYEPFVEACLKY 250 (319)
T ss_pred CHHHHHHHHHHCCCHHHHHHHHHHc----CC-cHHHHHHHHHHHHHhcCCHHHHHHHHhC---CCCCCChHHHHHHHHHC
Confidence 5566667777788887777665544 44 8888899999999999999988887654 33457788889999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHH
Q 047767 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 600 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 644 (666)
|+..+|..+..+ ..+..-+..|.+.|++.+|.+.--
T Consensus 251 ~~~~eA~~yI~k---------~~~~~rv~~y~~~~~~~~A~~~A~ 286 (319)
T PF04840_consen 251 GNKKEASKYIPK---------IPDEERVEMYLKCGDYKEAAQEAF 286 (319)
T ss_pred CCHHHHHHHHHh---------CChHHHHHHHHHCCCHHHHHHHHH
Confidence 999998888877 122566778889999999887643
No 173
>PF01535 PPR: PPR repeat; InterPro: IPR002885 This entry represents the PPR repeat. Pentatricopeptide repeat (PPR) proteins are characterised by tandem repeats of a degenerate 35 amino acid motif []. Most of PPR proteins have roles in mitochondria or plastid []. PPR repeats were discovered while screening Arabidopsis proteins for those predicted to be targeted to mitochondria or chloroplast [, ]. Some of these proteins have been shown to play a role in post-transcriptional processes within organelles and they are thought to be sequence-specific RNA-binding proteins [, , ]. Plant genomes have between one hundred to five hundred PPR genes per genome whereas non-plant genomes encode two to six PPR proteins. Although no PPR structures are yet known, the motif is predicted to fold into a helix-turn-helix structure similar to those found in the tetratricopeptide repeat (TPR) family (see PDOC50005 from PROSITEDOC) []. The plant PPR protein family has been divided in two subfamilies on the basis of their motif content and organisation [, ]. Examples of PPR repeat-containing proteins include PET309 P32522 from SWISSPROT, which may be involved in RNA stabilisation [], and crp1, which is involved in RNA processing []. The repeat is associated with a predicted plant protein O49549 from SWISSPROT that has a domain organisation similar to the human BRCA1 protein.
Probab=97.67 E-value=5.1e-05 Score=43.77 Aligned_cols=30 Identities=33% Similarity=0.712 Sum_probs=23.2
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGL 514 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~ 514 (666)
+|++++++|++.|++++|.++|++|.+.|+
T Consensus 2 ~y~~li~~~~~~~~~~~a~~~~~~M~~~g~ 31 (31)
T PF01535_consen 2 TYNSLISGYCKMGQFEEALEVFDEMRERGI 31 (31)
T ss_pred cHHHHHHHHHccchHHHHHHHHHHHhHCcC
Confidence 677788888888888888888888877663
No 174
>PRK10153 DNA-binding transcriptional activator CadC; Provisional
Probab=97.66 E-value=0.0012 Score=67.39 Aligned_cols=135 Identities=13% Similarity=0.052 Sum_probs=98.9
Q ss_pred CCCCCHHHHHHHHHHhcC--C---CcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhc--------CChHHHHHHHH
Q 047767 513 GLIPDKVTFLCVLAGCNH--S---GMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRA--------GILDKAEELLQ 578 (666)
Q Consensus 513 g~~p~~~~~~~l~~~~~~--~---g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~ 578 (666)
+.+.|...|..++.+... . ++.+.|..+|+++.+. .|+ ...|..+..+|... +++.++.+..+
T Consensus 332 ~~~~~~~Ay~~~lrg~~~~~~~~~~~~~~A~~lle~Ai~l---dP~~a~a~A~la~~~~~~~~~~~~~~~~l~~a~~~~~ 408 (517)
T PRK10153 332 GLPHQGAALTLFYQAHHYLNSGDAKSLNKASDLLEEILKS---EPDFTYAQAEKALADIVRHSQQPLDEKQLAALSTELD 408 (517)
T ss_pred cCCCCHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHHHhcCCccHHHHHHHHHHHH
Confidence 345666788888887432 2 3477999999999864 788 55566555544332 12344455554
Q ss_pred hCC----CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 579 QTP----GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 579 ~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+.. ...+...|..+.......|++++|...++++++++| +...|..+|.++...|+.++|.+.++++.....
T Consensus 409 ~a~al~~~~~~~~~~~ala~~~~~~g~~~~A~~~l~rAl~L~p-s~~a~~~lG~~~~~~G~~~eA~~~~~~A~~L~P 484 (517)
T PRK10153 409 NIVALPELNVLPRIYEILAVQALVKGKTDEAYQAINKAIDLEM-SWLNYVLLGKVYELKGDNRLAADAYSTAFNLRP 484 (517)
T ss_pred HhhhcccCcCChHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 432 222556777777777788999999999999999999 578999999999999999999999998866443
No 175
>COG4700 Uncharacterized protein conserved in bacteria containing a divergent form of TPR repeats [Function unknown]
Probab=97.65 E-value=0.0013 Score=54.60 Aligned_cols=102 Identities=17% Similarity=0.108 Sum_probs=90.0
Q ss_pred hCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCC---CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC--Ccch
Q 047767 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG---GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV--DFAV 622 (666)
Q Consensus 548 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~ 622 (666)
..+.|++..-..|..++.+.|+..||...|++... ..|......+.++....++...|...++.+.+..|. .|..
T Consensus 83 ~~~ApTvqnr~rLa~al~elGr~~EA~~hy~qalsG~fA~d~a~lLglA~Aqfa~~~~A~a~~tLe~l~e~~pa~r~pd~ 162 (251)
T COG4700 83 LAIAPTVQNRYRLANALAELGRYHEAVPHYQQALSGIFAHDAAMLLGLAQAQFAIQEFAAAQQTLEDLMEYNPAFRSPDG 162 (251)
T ss_pred HhhchhHHHHHHHHHHHHHhhhhhhhHHHHHHHhccccCCCHHHHHHHHHHHHhhccHHHHHHHHHHHhhcCCccCCCCc
Confidence 35678888888999999999999999999998763 348888888999999999999999999999998876 5778
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 623 YSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 623 ~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
...++..|...|++.+|...|+.+.+.
T Consensus 163 ~Ll~aR~laa~g~~a~Aesafe~a~~~ 189 (251)
T COG4700 163 HLLFARTLAAQGKYADAESAFEVAISY 189 (251)
T ss_pred hHHHHHHHHhcCCchhHHHHHHHHHHh
Confidence 889999999999999999999988764
No 176
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.62 E-value=0.072 Score=51.27 Aligned_cols=146 Identities=12% Similarity=0.035 Sum_probs=84.8
Q ss_pred HhcCCChhhHHHHhhcCCCC---C------chhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH--Hc
Q 047767 54 FVKSGHLNSAKKLFDEMPAR---D------MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC--SN 122 (666)
Q Consensus 54 ~~~~g~~~~A~~~~~~~~~~---~------~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~--~~ 122 (666)
+-+++++++|.++|.++-+. + ...-+.+|++|... +.+.....+....+. .| ...|-.+..++ -+
T Consensus 16 Lqkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl~-nld~Me~~l~~l~~~--~~-~s~~l~LF~~L~~Y~ 91 (549)
T PF07079_consen 16 LQKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFLN-NLDLMEKQLMELRQQ--FG-KSAYLPLFKALVAYK 91 (549)
T ss_pred HHHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHHh-hHHHHHHHHHHHHHh--cC-CchHHHHHHHHHHHH
Confidence 45889999999999988632 2 22345677777644 556666665555543 22 34455554443 36
Q ss_pred CCChHHHHHHHHHHHHh--cCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHH
Q 047767 123 AGFYTEGIQIHCRVLSL--GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYN 200 (666)
Q Consensus 123 ~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~ 200 (666)
.+.++.|.+.+..-.+. +..+. ..+.=+.- +| +|...-+..+.++...|.+.++..+++
T Consensus 92 ~k~~~kal~~ls~w~~~~~~~~~~--~Ld~ni~~------------l~-----~df~l~~i~a~sLIe~g~f~EgR~iLn 152 (549)
T PF07079_consen 92 QKEYRKALQALSVWKEQIKGTESP--WLDTNIQQ------------LF-----SDFFLDEIEAHSLIETGRFSEGRAILN 152 (549)
T ss_pred hhhHHHHHHHHHHHHhhhcccccc--hhhhhHHH------------Hh-----hHHHHHHHHHHHHHhcCCcchHHHHHH
Confidence 77888888887766554 21111 00000000 00 222333566677788899999888888
Q ss_pred HHHHcCCC----CCHhhHHHHHHHhc
Q 047767 201 KMKAEGVE----PNGLSFCYMVRGCS 222 (666)
Q Consensus 201 ~m~~~~~~----p~~~t~~~ll~~~~ 222 (666)
++...=++ .+..+|+.++-.++
T Consensus 153 ~i~~~llkrE~~w~~d~yd~~vlmls 178 (549)
T PF07079_consen 153 RIIERLLKRECEWNSDMYDRAVLMLS 178 (549)
T ss_pred HHHHHHhhhhhcccHHHHHHHHHHHh
Confidence 87765333 56677776444443
No 177
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.61 E-value=0.0062 Score=57.66 Aligned_cols=141 Identities=12% Similarity=0.178 Sum_probs=81.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-CcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHH
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS-GMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDM 563 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~ 563 (666)
.+..|...|++..|-.++.+ +...|... |+++.|.+.|++..+.+..... ..++..++..
T Consensus 100 A~~~y~~~G~~~~aA~~~~~---------------lA~~ye~~~~d~e~Ai~~Y~~A~~~y~~e~~~~~a~~~~~~~A~l 164 (282)
T PF14938_consen 100 AIEIYREAGRFSQAAKCLKE---------------LAEIYEEQLGDYEKAIEYYQKAAELYEQEGSPHSAAECLLKAADL 164 (282)
T ss_dssp HHHHHHHCT-HHHHHHHHHH---------------HHHHHCCTT--HHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHhcCcHHHHHHHHHH---------------HHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChhhHHHHHHHHHHH
Confidence 44555566666555544443 44456666 7888888888887765432222 4556677888
Q ss_pred HHhcCChHHHHHHHHhCC----CCC----CHH-HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCc-----chHHHHHHH
Q 047767 564 LGRAGILDKAEELLQQTP----GGG----DCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDF-----AVYSQVSNF 629 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~----~~~----~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~-----~~~~~l~~~ 629 (666)
+.+.|++++|+++|+++. ..+ +.. .+...+-.+...||...|.+.+++....+|.-. .....|+.+
T Consensus 165 ~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~~~~~l~~A 244 (282)
T PF14938_consen 165 YARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYKFLEDLLEA 244 (282)
T ss_dssp HHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHH
Confidence 889999999999888643 111 121 223334455677899999999999888887532 234455666
Q ss_pred Hhh--cCCchHHHHHHH
Q 047767 630 YSE--IGEFEVSMQIRE 644 (666)
Q Consensus 630 ~~~--~g~~~~A~~~~~ 644 (666)
+-. ...+.+|+.-|+
T Consensus 245 ~~~~D~e~f~~av~~~d 261 (282)
T PF14938_consen 245 YEEGDVEAFTEAVAEYD 261 (282)
T ss_dssp HHTT-CCCHHHHCHHHT
T ss_pred HHhCCHHHHHHHHHHHc
Confidence 533 223444444443
No 178
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.57 E-value=0.0028 Score=59.70 Aligned_cols=134 Identities=13% Similarity=0.091 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHH
Q 047767 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG-CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562 (666)
Q Consensus 484 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 562 (666)
..|-.+++...+.+..+.|..+|.+.++.+ ......|...... +...++.+.|.++|+...+. +..+...|...++
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~~-~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~--f~~~~~~~~~Y~~ 78 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKDK-RCTYHVYVAYALMEYYCNKDPKRARKIFERGLKK--FPSDPDFWLEYLD 78 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHH--HTT-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcCC-CCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--CCCCHHHHHHHHH
Confidence 467888888888889999999999998643 2223334333333 33346778899999999986 4456788889999
Q ss_pred HHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCc
Q 047767 563 MLGRAGILDKAEELLQQTP-GGGD----CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
.+.+.|+.+.|..+|++.. ..|. ...|...+.--.+.|+.+...++.+++.+..|.+.
T Consensus 79 ~l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~~~~~~ 141 (280)
T PF05843_consen 79 FLIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEELFPEDN 141 (280)
T ss_dssp HHHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHHTTTS-
T ss_pred HHHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhhhh
Confidence 9999999999999999765 3333 35899999988999999999999999999988753
No 179
>cd00189 TPR Tetratricopeptide repeat domain; typically contains 34 amino acids [WLF]-X(2)-[LIM]-[GAS]-X(2)-[YLF]-X(8)-[ASE]-X(3)-[FYL]-X(2)-[ASL]-X(4)-[PKE] is the consensus sequence; found in a variety of organisms including bacteria, cyanobacteria, yeast, fungi, plants, and humans in various subcellular locations; involved in a variety of functions including protein-protein interactions, but common features in the interaction partners have not been defined; involved in chaperone, cell-cycle, transciption, and protein transport complexes; the number of TPR motifs varies among proteins (1,3-11,13 15,16,19); 5-6 tandem repeats generate a right-handed helical structure with an amphipathic channel that is thought to accomodate an alpha-helix of a target protein; it has been proposed that TPR proteins preferably interact with WD-40 repeat proteins, but in many instances several TPR-proteins seem to aggregate to multi-protein complexes; examples of TPR-proteins include, Cdc16p, Cdc23p and C
Probab=97.56 E-value=0.00056 Score=52.44 Aligned_cols=91 Identities=14% Similarity=0.082 Sum_probs=48.9
Q ss_pred HHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhC
Q 047767 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHG 600 (666)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 600 (666)
+...+...|++++|...++.+.+. .|+ ...+..+..++...|++++|.+.++... ..| +...+..+...+...|
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (100)
T cd00189 6 LGNLYYKLGDYDEALEYYEKALEL---DPDNADAYYNLAAAYYKLGKYEEALEDYEKALELDPDNAKAYYNLGLAYYKLG 82 (100)
T ss_pred HHHHHHHHhcHHHHHHHHHHHHhc---CCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcchhHHHHHHHHHHHHH
Confidence 333444455555555555555432 222 2445555555556666666666655432 222 3345555556666666
Q ss_pred ChHHHHHHHHHHHhcCC
Q 047767 601 NEIIGRRVANILMELEP 617 (666)
Q Consensus 601 ~~~~a~~~~~~~~~~~p 617 (666)
+++.|...++++.+..|
T Consensus 83 ~~~~a~~~~~~~~~~~~ 99 (100)
T cd00189 83 KYEEALEAYEKALELDP 99 (100)
T ss_pred hHHHHHHHHHHHHccCC
Confidence 66666666666666555
No 180
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.56 E-value=0.00087 Score=52.97 Aligned_cols=87 Identities=13% Similarity=0.003 Sum_probs=53.7
Q ss_pred HHHHHHHhcCChHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC---CcchHHHHHHHH
Q 047767 559 CMIDMLGRAGILDKAEELLQQTPGG---G--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV---DFAVYSQVSNFY 630 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~ 630 (666)
.+..++-..|+.++|+.++++.... + -...+..+..++...|++++|+.++++.....|+ +......++.++
T Consensus 6 ~~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~p~~~~~~~l~~f~Al~L 85 (120)
T PF12688_consen 6 ELAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEFPDDELNAALRVFLALAL 85 (120)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCccccHHHHHHHHHHH
Confidence 3455566666677777666654411 1 1234555666667777777777777777776666 555556666677
Q ss_pred hhcCCchHHHHHHHH
Q 047767 631 SEIGEFEVSMQIRET 645 (666)
Q Consensus 631 ~~~g~~~~A~~~~~~ 645 (666)
...|+.++|++.+-.
T Consensus 86 ~~~gr~~eAl~~~l~ 100 (120)
T PF12688_consen 86 YNLGRPKEALEWLLE 100 (120)
T ss_pred HHCCCHHHHHHHHHH
Confidence 777777777766543
No 181
>PRK15363 pathogenicity island 2 chaperone protein SscA; Provisional
Probab=97.55 E-value=0.0029 Score=51.93 Aligned_cols=102 Identities=7% Similarity=-0.054 Sum_probs=60.7
Q ss_pred hccCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC
Q 047767 475 FEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA 552 (666)
Q Consensus 475 ~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p 552 (666)
+..+. +.+....-.+..-+...|++++|.++|+-+.. +.|... -|..|.-+|...|++++|+..|...... .|
T Consensus 26 l~~~~~~~~l~~lY~~A~~ly~~G~l~~A~~~f~~L~~--~Dp~~~~y~~gLG~~~Q~~g~~~~AI~aY~~A~~L---~~ 100 (157)
T PRK15363 26 LLDDDVTQPLNTLYRYAMQLMEVKEFAGAARLFQLLTI--YDAWSFDYWFRLGECCQAQKHWGEAIYAYGRAAQI---KI 100 (157)
T ss_pred HHCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--hCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhc---CC
Confidence 33444 34444444555556666777777777766666 555444 3445555566666777777777666643 34
Q ss_pred C-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 553 D-RQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 553 ~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
| +..+-.+..++...|+.+.|.+.|+...
T Consensus 101 ddp~~~~~ag~c~L~lG~~~~A~~aF~~Ai 130 (157)
T PRK15363 101 DAPQAPWAAAECYLACDNVCYAIKALKAVV 130 (157)
T ss_pred CCchHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 4 6666666666666666666666665443
No 182
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.55 E-value=0.079 Score=49.91 Aligned_cols=284 Identities=14% Similarity=0.080 Sum_probs=185.4
Q ss_pred hHHhHHHHHHHh--cCChHHHHHHhccCC---CCCcccHHHHHHH--HHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHh
Q 047767 350 HVQSALTDMYGK--CNVIESSVAVFESAP---GRSLECCNSLMTS--LLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422 (666)
Q Consensus 350 ~~~~~l~~~~~~--~~~~~~a~~~~~~~~---~~~~~~~~~li~~--~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 422 (666)
.-|..|-..+.. .|+-..|.+.-.+.. ..|-...-.++.+ -.-.|+++.|.+-|+.|... ..|-..-|
T Consensus 83 rgyqALStGliAagAGda~lARkmt~~~~~llssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d-----PEtRllGL 157 (531)
T COG3898 83 RGYQALSTGLIAAGAGDASLARKMTARASKLLSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD-----PETRLLGL 157 (531)
T ss_pred hHHHHHhhhhhhhccCchHHHHHHHHHHHhhhhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC-----hHHHHHhH
Confidence 345555555554 567777776654432 2344333444433 34479999999999999863 33332222
Q ss_pred chh--hhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCC-----CCCHH--HHHHHHHHH
Q 047767 423 KAL--SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-----SPNVV--CFTSIMNGY 493 (666)
Q Consensus 423 ~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~--~~~~li~~~ 493 (666)
.++ .....|+.+.+..+-+...... +.-.....+.+...+..|+++.|+++.+.-. ++++. .-..|+.+-
T Consensus 158 RgLyleAqr~GareaAr~yAe~Aa~~A-p~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAk 236 (531)
T COG3898 158 RGLYLEAQRLGAREAARHYAERAAEKA-PQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAK 236 (531)
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhhc-cCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHH
Confidence 221 1456777887777766554433 2335667788899999999999999998655 24432 122233221
Q ss_pred HH---cCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCC
Q 047767 494 SR---NGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569 (666)
Q Consensus 494 ~~---~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 569 (666)
.. .-+...|...-.+..+ +.||-. .-..-..++.+.|+..++-.+++.+-+. .|.+.++...+ +.+.|+
T Consensus 237 A~s~ldadp~~Ar~~A~~a~K--L~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~---ePHP~ia~lY~--~ar~gd 309 (531)
T COG3898 237 AMSLLDADPASARDDALEANK--LAPDLVPAAVVAARALFRDGNLRKGSKILETAWKA---EPHPDIALLYV--RARSGD 309 (531)
T ss_pred HHHHhcCChHHHHHHHHHHhh--cCCccchHHHHHHHHHHhccchhhhhhHHHHHHhc---CCChHHHHHHH--HhcCCC
Confidence 11 2355566666555555 778765 3444556789999999999999999855 67666654433 456666
Q ss_pred hHHHH----HHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc-CCchHHHHHHH
Q 047767 570 LDKAE----ELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI-GEFEVSMQIRE 644 (666)
Q Consensus 570 ~~~A~----~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~ 644 (666)
..... +-++.|+ +.+..+...+..+-...|++..|..-.+.+....|. ..+|..|+.+-... |+-+++.+++-
T Consensus 310 ta~dRlkRa~~L~slk-~nnaes~~~va~aAlda~e~~~ARa~Aeaa~r~~pr-es~~lLlAdIeeAetGDqg~vR~wlA 387 (531)
T COG3898 310 TALDRLKRAKKLESLK-PNNAESSLAVAEAALDAGEFSAARAKAEAAAREAPR-ESAYLLLADIEEAETGDQGKVRQWLA 387 (531)
T ss_pred cHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHhccchHHHHHHHHHHhhhCch-hhHHHHHHHHHhhccCchHHHHHHHH
Confidence 43222 1233444 446677777888888999999999999999999997 46888888888766 99999999886
Q ss_pred HHHh
Q 047767 645 TALA 648 (666)
Q Consensus 645 ~~~~ 648 (666)
+...
T Consensus 388 qav~ 391 (531)
T COG3898 388 QAVK 391 (531)
T ss_pred HHhc
Confidence 6553
No 183
>PF14559 TPR_19: Tetratricopeptide repeat; PDB: 2R5S_A 3QDN_B 3QOU_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 3FP3_A 3LCA_A ....
Probab=97.52 E-value=0.00013 Score=51.83 Aligned_cols=57 Identities=18% Similarity=0.138 Sum_probs=25.9
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcch
Q 047767 566 RAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622 (666)
Q Consensus 566 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 622 (666)
..|++++|+++|+++. ..| +...+..+...|.+.|++++|.+.++++...+|+++..
T Consensus 3 ~~~~~~~A~~~~~~~l~~~p~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 61 (68)
T PF14559_consen 3 KQGDYDEAIELLEKALQRNPDNPEARLLLAQCYLKQGQYDEAEELLERLLKQDPDNPEY 61 (68)
T ss_dssp HTTHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHTT-HHHHHHHHHCCHGGGTTHHHH
T ss_pred hccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCHHHH
Confidence 3444444554444432 222 34444444444555555555555555555555544333
No 184
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.51 E-value=0.00089 Score=50.64 Aligned_cols=79 Identities=16% Similarity=0.104 Sum_probs=66.4
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHhCCC-CCCcccHHHHHHHHHcCC--------ChHHHHHHHHHHHHhcCCCchhhhh
Q 047767 79 NLLISGCGKFRHPKQALYLYDEMVSHGI-KESASTFSSVLSVCSNAG--------FYTEGIQIHCRVLSLGFGLNLYIGS 149 (666)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~-~~~~~~~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 149 (666)
-..|..+...+++.....+|+.+++.|+ -|+..+|+.++.+.++.. .+-..+.+++.|+..++.|+..+|+
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~lKP~~etYn 108 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNKLKPNDETYN 108 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhccCCcHHHHH
Confidence 3456666677999999999999999999 899999999999988653 3456778899999999999999999
Q ss_pred HHHHHhHh
Q 047767 150 PLVDLYMR 157 (666)
Q Consensus 150 ~ll~~~~~ 157 (666)
.++..+.+
T Consensus 109 ivl~~Llk 116 (120)
T PF08579_consen 109 IVLGSLLK 116 (120)
T ss_pred HHHHHHHH
Confidence 99887654
No 185
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=97.50 E-value=0.00043 Score=66.81 Aligned_cols=62 Identities=5% Similarity=-0.131 Sum_probs=29.0
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCH----HHHHHHHHHHHhhCChHHHHHHHHHHHhc
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQT-PGGGDC----MMWSSLLRSCRVHGNEIIGRRVANILMEL 615 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 615 (666)
...++.+..+|...|++++|+..|++. ...|+. .+|..+..+|...|+.++|++.++++++.
T Consensus 75 a~a~~NLG~AL~~lGryeEAIa~f~rALeL~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrALel 141 (453)
T PLN03098 75 AEDAVNLGLSLFSKGRVKDALAQFETALELNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTALRD 141 (453)
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 444444555555555555555555442 233321 12444444455555555555555555544
No 186
>PF13414 TPR_11: TPR repeat; PDB: 2HO1_B 2FI7_B 2DBA_A 3Q4A_B 2C2L_D 3Q47_B 3Q49_B 2PL2_B 3IEG_B 2FBN_A ....
Probab=97.49 E-value=0.00023 Score=50.61 Aligned_cols=64 Identities=11% Similarity=0.062 Sum_probs=52.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhC-ChHHHHHHHHHHHhcCC
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHG-NEIIGRRVANILMELEP 617 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p 617 (666)
...|..++..+...|++++|+..|++.. ..| +...|..+..++...| ++++|++.++++++++|
T Consensus 3 a~~~~~~g~~~~~~~~~~~A~~~~~~ai~~~p~~~~~~~~~g~~~~~~~~~~~~A~~~~~~al~l~P 69 (69)
T PF13414_consen 3 AEAWYNLGQIYFQQGDYEEAIEYFEKAIELDPNNAEAYYNLGLAYMKLGKDYEEAIEDFEKALKLDP 69 (69)
T ss_dssp HHHHHHHHHHHHHTTHHHHHHHHHHHHHHHSTTHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhCccHHHHHHHHHHHHHcCc
Confidence 4567888888888999999998888654 344 6678888888888888 79999999999999887
No 187
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=97.49 E-value=0.0016 Score=61.26 Aligned_cols=163 Identities=13% Similarity=0.044 Sum_probs=100.3
Q ss_pred HHHhhCCHHHHHHHhccCCCCCH-HHHHHHHHH--HHHcCChhHHHHHHHHHHHcCCCCCHHHHHH---H----------
Q 047767 461 AYSRCGHIELSHQVFEKIPSPNV-VCFTSIMNG--YSRNGMGREALDMLEVMIQRGLIPDKVTFLC---V---------- 524 (666)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~-~~~~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~---l---------- 524 (666)
.+.-.|++++|...--.+.+.|. ..+...+++ +--.++.+.+...|++... ..|+...-.. .
T Consensus 178 cl~~~~~~~~a~~ea~~ilkld~~n~~al~vrg~~~yy~~~~~ka~~hf~qal~--ldpdh~~sk~~~~~~k~le~~k~~ 255 (486)
T KOG0550|consen 178 CLAFLGDYDEAQSEAIDILKLDATNAEALYVRGLCLYYNDNADKAINHFQQALR--LDPDHQKSKSASMMPKKLEVKKER 255 (486)
T ss_pred hhhhcccchhHHHHHHHHHhcccchhHHHHhcccccccccchHHHHHHHhhhhc--cChhhhhHHhHhhhHHHHHHHHhh
Confidence 34445666666665555554332 223333333 2345667777777777666 4555442111 1
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHH--HH
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDAD-----RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRS--CR 597 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~--~~ 597 (666)
.+-..+.|++..|.+.|.+.+ ++.|+ ...|.....+..+.|+.++|+.-.+....-.+..++..+.++ +.
T Consensus 256 gN~~fk~G~y~~A~E~Yteal---~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~iD~syikall~ra~c~l 332 (486)
T KOG0550|consen 256 GNDAFKNGNYRKAYECYTEAL---NIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALKIDSSYIKALLRRANCHL 332 (486)
T ss_pred hhhHhhccchhHHHHHHHHhh---cCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhhcCHHHHHHHHHHHHHHH
Confidence 123457889999999998887 55665 555777777788999999999988877623333333333333 55
Q ss_pred hhCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 047767 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 629 (666)
..+++++|++-++++++.... ......|..+
T Consensus 333 ~le~~e~AV~d~~~a~q~~~s-~e~r~~l~~A 363 (486)
T KOG0550|consen 333 ALEKWEEAVEDYEKAMQLEKD-CEIRRTLREA 363 (486)
T ss_pred HHHHHHHHHHHHHHHHhhccc-cchHHHHHHH
Confidence 678899999999999987654 4444444443
No 188
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.48 E-value=0.00086 Score=61.81 Aligned_cols=98 Identities=9% Similarity=0.003 Sum_probs=58.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG----DCMMWS 590 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~ 590 (666)
.|........+.|++++|...|+.+... .|+ +..+..++.+|...|++++|...|+.+. .-| ....+.
T Consensus 145 ~Y~~A~~l~~~~~~y~~Ai~af~~fl~~---yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~ 221 (263)
T PRK10803 145 DYNAAIALVQDKSRQDDAIVAFQNFVKK---YPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMF 221 (263)
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHH---CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHH
Confidence 3544444445557777777777777755 343 2455566666777777777776666553 112 233444
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCc
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
.++..+...|+.+.|...|+++++..|++.
T Consensus 222 klg~~~~~~g~~~~A~~~~~~vi~~yP~s~ 251 (263)
T PRK10803 222 KVGVIMQDKGDTAKAKAVYQQVIKKYPGTD 251 (263)
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHCcCCH
Confidence 455556666677777777777777666543
No 189
>PF08579 RPM2: Mitochondrial ribonuclease P subunit (RPM2); InterPro: IPR013888 Ribonuclease P (RNase P) generates mature tRNA molecules by cleaving their 5' ends. Rpm2 is a protein subunit of the yeast mitochondrial RNase P. It has the ability to act as a transcriptional activator in the nucleus, where it plays a role in defining the steady-state levels of mRNAs for some nucleus-encoded mitochondrial components. Rpm2p is also involved in maturation of Rpm1 and in translation of mitochondrial mRNAs [, , ].
Probab=97.47 E-value=0.0013 Score=49.83 Aligned_cols=79 Identities=10% Similarity=0.050 Sum_probs=64.7
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCC-CCCHhhHHHHHHHhcccC--------ChHHHHHHHHHHHHhCCCCchHHHH
Q 047767 180 NLMLRAFCELSRPDEVLRMYNKMKAEGV-EPNGLSFCYMVRGCSIGM--------LLDEGKQLHSHVIKLGWVDVNIFVA 250 (666)
Q Consensus 180 ~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~t~~~ll~~~~~~~--------~~~~a~~~~~~~~~~~~~~~~~~~~ 250 (666)
...|..+...+++.....+|+.+++.|+ .|+..+|+.++++.++.. .+-....+|+.|+..+ ++|+..+|
T Consensus 29 i~~I~~~~~~~d~N~I~~lYqslkRN~i~lPsv~~Yn~VL~Si~~R~lD~~~ie~kl~~LLtvYqDiL~~~-lKP~~etY 107 (120)
T PF08579_consen 29 IDNINSCFENEDYNIINPLYQSLKRNGITLPSVELYNKVLKSIAKRELDSEDIENKLTNLLTVYQDILSNK-LKPNDETY 107 (120)
T ss_pred HHHHHHHHhhcchHHHHHHHHHHHhcCCCCCcHHHHHHHHHHHHHccccchhHHHHHHHHHHHHHHHHHhc-cCCcHHHH
Confidence 4456666777999999999999999999 999999999999866442 3455678889999888 99999999
Q ss_pred HHHHHHHHc
Q 047767 251 NALVDFYSA 259 (666)
Q Consensus 251 ~~l~~~~~~ 259 (666)
+.++..+.+
T Consensus 108 nivl~~Llk 116 (120)
T PF08579_consen 108 NIVLGSLLK 116 (120)
T ss_pred HHHHHHHHH
Confidence 988887765
No 190
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.44 E-value=0.0008 Score=65.76 Aligned_cols=121 Identities=10% Similarity=0.092 Sum_probs=88.8
Q ss_pred CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCC-C-----CchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcc
Q 047767 38 PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-R-----DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111 (666)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 111 (666)
+..+.+......++..+....+++.+..++-+.+. | ...+.+++|+.|.+.|..+.++++++.=...|+-||..
T Consensus 60 ~~~~vS~~dld~fvn~~~~~~~~d~~~~~L~k~R~s~~~~~~~~~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~ 139 (429)
T PF10037_consen 60 RKKPVSSLDLDIFVNNVESKDDLDEVEDVLYKFRHSPNCSYLLPSTHHALVRQCLELGAEDELLELLKNRLQYGIFPDNF 139 (429)
T ss_pred cCCCCcHHHHHHHHhhcCCHhHHHHHHHHHHHHHcCcccccccCccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChh
Confidence 45566666777777777777777778777777663 2 23355688888888888888888888888888888888
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhc
Q 047767 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158 (666)
Q Consensus 112 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 158 (666)
+++.|+..+.+.|++..|.++...|...+...+..++..-+.+|.+.
T Consensus 140 s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe~~~~~~t~~L~l~~~~~~ 186 (429)
T PF10037_consen 140 SFNLLMDHFLKKGNYKSAAKVATEMMLQEEFDNPSTQALALYSCYKY 186 (429)
T ss_pred hHHHHHHHHhhcccHHHHHHHHHHHHHhhccCCchHHHHHHHHHHHh
Confidence 88888888888888888888888877766556666655555555544
No 191
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.42 E-value=0.14 Score=52.02 Aligned_cols=54 Identities=11% Similarity=0.202 Sum_probs=38.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHH
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFM 406 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 406 (666)
+....-.+.+++.+.|.-++|...|-+...| .+.+..|...+++.+|.++-+..
T Consensus 851 ~s~llp~~a~mf~svGMC~qAV~a~Lr~s~p-----kaAv~tCv~LnQW~~avelaq~~ 904 (1189)
T KOG2041|consen 851 DSELLPVMADMFTSVGMCDQAVEAYLRRSLP-----KAAVHTCVELNQWGEAVELAQRF 904 (1189)
T ss_pred ccchHHHHHHHHHhhchHHHHHHHHHhccCc-----HHHHHHHHHHHHHHHHHHHHHhc
Confidence 6667777888888888888887776554443 34566777788888888776654
No 192
>CHL00033 ycf3 photosystem I assembly protein Ycf3
Probab=97.42 E-value=0.003 Score=54.59 Aligned_cols=97 Identities=14% Similarity=0.042 Sum_probs=43.6
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-C-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 047767 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-D-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCR 597 (666)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 597 (666)
..+...+...|++++|...+++.... ...| + ..++..+..+|...|++++|++.+++.. ..| ....+..+...+.
T Consensus 39 ~~~g~~~~~~g~~~~A~~~~~~al~l-~~~~~~~~~~~~~lg~~~~~~g~~~eA~~~~~~Al~~~~~~~~~~~~la~i~~ 117 (168)
T CHL00033 39 YRDGMSAQSEGEYAEALQNYYEAMRL-EIDPYDRSYILYNIGLIHTSNGEHTKALEYYFQALERNPFLPQALNNMAVICH 117 (168)
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhc-cccchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHH
Confidence 33333344444444444444444422 1011 0 1244444445555555555555544432 122 2223333333333
Q ss_pred -------hhCChH-------HHHHHHHHHHhcCCCC
Q 047767 598 -------VHGNEI-------IGRRVANILMELEPVD 619 (666)
Q Consensus 598 -------~~~~~~-------~a~~~~~~~~~~~p~~ 619 (666)
..|+++ +|..++++++..+|++
T Consensus 118 ~~~~~~~~~g~~~~A~~~~~~a~~~~~~a~~~~p~~ 153 (168)
T CHL00033 118 YRGEQAIEQGDSEIAEAWFDQAAEYWKQAIALAPGN 153 (168)
T ss_pred HhhHHHHHcccHHHHHHHHHHHHHHHHHHHHhCccc
Confidence 445544 6666777777788754
No 193
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=97.41 E-value=0.00028 Score=44.50 Aligned_cols=42 Identities=21% Similarity=0.370 Sum_probs=38.1
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
.+|..+..+|...|++++|++.|+++++.+|+|+.++..|+.
T Consensus 2 ~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~~~~a~~~La~ 43 (44)
T PF13428_consen 2 AAWLALARAYRRLGQPDEAERLLRRALALDPDDPEAWRALAQ 43 (44)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCHHHHHHhhh
Confidence 357788899999999999999999999999999999988875
No 194
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=97.40 E-value=0.12 Score=52.57 Aligned_cols=200 Identities=12% Similarity=0.049 Sum_probs=122.3
Q ss_pred CCCcccHHHHHHHHHcCCChHHHHHHHHHHHH-hcCCC--------chhhhhHHHHHhHhcCChhHHHHhhccCCCCCcc
Q 047767 107 KESASTFSSVLSVCSNAGFYTEGIQIHCRVLS-LGFGL--------NLYIGSPLVDLYMRMGPSVRALDLFDELPERNLA 177 (666)
Q Consensus 107 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~-~~~~~--------~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~ 177 (666)
.|.+..|..+.......-.++.|+..|-+... .|+.. +...-.+=+. +-.|.+++|+++|-.+.++|.
T Consensus 689 nPHprLWrllAe~Al~Kl~l~tAE~AFVrc~dY~Gik~vkrl~~i~s~~~q~aei~--~~~g~feeaek~yld~drrDL- 765 (1189)
T KOG2041|consen 689 NPHPRLWRLLAEYALFKLALDTAEHAFVRCGDYAGIKLVKRLRTIHSKEQQRAEIS--AFYGEFEEAEKLYLDADRRDL- 765 (1189)
T ss_pred CCchHHHHHHHHHHHHHHhhhhHhhhhhhhccccchhHHHHhhhhhhHHHHhHhHh--hhhcchhHhhhhhhccchhhh-
Confidence 47778888887777666677777766655432 12211 1111111122 224789999999988887664
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCC----HhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHH
Q 047767 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPN----GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANAL 253 (666)
Q Consensus 178 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~----~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 253 (666)
.|..+.+.||+-.+.++++. -|-..| ...|+.+-..++....++.|.+.+...-.. ...
T Consensus 766 ----Aielr~klgDwfrV~qL~r~---g~~d~dD~~~e~A~r~ig~~fa~~~~We~A~~yY~~~~~~----------e~~ 828 (1189)
T KOG2041|consen 766 ----AIELRKKLGDWFRVYQLIRN---GGSDDDDEGKEDAFRNIGETFAEMMEWEEAAKYYSYCGDT----------ENQ 828 (1189)
T ss_pred ----hHHHHHhhhhHHHHHHHHHc---cCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccch----------HhH
Confidence 35566677888777666542 111112 235666666777777788888777654332 235
Q ss_pred HHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHH
Q 047767 254 VDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333 (666)
Q Consensus 254 ~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 333 (666)
+.++.+...+++-+.+.+.+++ +....-.+...+.+.|.-++|.+.+-+-.. | ...+.+|...+++.+|.
T Consensus 829 ~ecly~le~f~~LE~la~~Lpe-~s~llp~~a~mf~svGMC~qAV~a~Lr~s~----p-----kaAv~tCv~LnQW~~av 898 (1189)
T KOG2041|consen 829 IECLYRLELFGELEVLARTLPE-DSELLPVMADMFTSVGMCDQAVEAYLRRSL----P-----KAAVHTCVELNQWGEAV 898 (1189)
T ss_pred HHHHHHHHhhhhHHHHHHhcCc-ccchHHHHHHHHHhhchHHHHHHHHHhccC----c-----HHHHHHHHHHHHHHHHH
Confidence 6777777777777777777765 344556677888888888888876654321 1 13455666666666555
Q ss_pred HHH
Q 047767 334 QIH 336 (666)
Q Consensus 334 ~~~ 336 (666)
++-
T Consensus 899 ela 901 (1189)
T KOG2041|consen 899 ELA 901 (1189)
T ss_pred HHH
Confidence 543
No 195
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=97.40 E-value=0.022 Score=52.23 Aligned_cols=56 Identities=7% Similarity=0.017 Sum_probs=46.8
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVD---FAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
+..-|.+.|.+..|..-++.+++..|+. +.+...++.+|...|..++|.++.+.+.
T Consensus 181 ia~~Y~~~~~y~AA~~r~~~v~~~Yp~t~~~~eal~~l~~ay~~lg~~~~a~~~~~~l~ 239 (243)
T PRK10866 181 VAEYYTKRGAYVAVVNRVEQMLRDYPDTQATRDALPLMENAYRQLQLNAQADKVAKIIA 239 (243)
T ss_pred HHHHHHHcCchHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHcCChHHHHHHHHHHh
Confidence 4445888999999999999999988875 4556778899999999999999887654
No 196
>PF14938 SNAP: Soluble NSF attachment protein, SNAP; PDB: 1QQE_A 2IFU_A.
Probab=97.39 E-value=0.093 Score=49.72 Aligned_cols=97 Identities=13% Similarity=0.141 Sum_probs=57.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-----CCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhh-CCCCC--ch
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLI-----PDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVY-GIDAD--RQ 555 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-----p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~--~~ 555 (666)
.+..+...+.+.|++++|.++|++....-.. ++.. .|...+-++...|++..|.+.+++..... ++..+ ..
T Consensus 157 ~~~~~A~l~~~l~~y~~A~~~~e~~~~~~l~~~l~~~~~~~~~l~a~l~~L~~~D~v~A~~~~~~~~~~~~~F~~s~E~~ 236 (282)
T PF14938_consen 157 CLLKAADLYARLGRYEEAIEIYEEVAKKCLENNLLKYSAKEYFLKAILCHLAMGDYVAARKALERYCSQDPSFASSREYK 236 (282)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHTCCCHCTTGHHHHHHHHHHHHHHHHTT-HHHHHHHHHHHGTTSTTSTTSHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHH
Confidence 3455667788888999999998888764322 1221 22233335556788888888888876431 22222 34
Q ss_pred HHHHHHHHHHh--cCChHHHHHHHHhCC
Q 047767 556 HYSCMIDMLGR--AGILDKAEELLQQTP 581 (666)
Q Consensus 556 ~~~~l~~~~~~--~g~~~~A~~~~~~~~ 581 (666)
....|++++-. ...+.+|+.-|+.+.
T Consensus 237 ~~~~l~~A~~~~D~e~f~~av~~~d~~~ 264 (282)
T PF14938_consen 237 FLEDLLEAYEEGDVEAFTEAVAEYDSIS 264 (282)
T ss_dssp HHHHHHHHHHTT-CCCHHHHCHHHTTSS
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHcccC
Confidence 55666777643 234666777777666
No 197
>PF10037 MRP-S27: Mitochondrial 28S ribosomal protein S27; InterPro: IPR019266 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of small ribosomal proteins possessing one of three conserved sequence blocks found in proteins that stimulate the dissociation of guanine nucleotides from G-proteins. This leaves open the possibility that they may be functional partners of GTP-binding ribosomal proteins [].
Probab=97.37 E-value=0.0015 Score=63.87 Aligned_cols=83 Identities=14% Similarity=0.115 Sum_probs=67.4
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 047767 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256 (666)
Q Consensus 177 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (666)
.+..++++.|...|..+.++.+++.=...|+-||..|++.+|..+.+.|++..|.++...|...+ .-.+..++..-+.+
T Consensus 104 ~t~ha~vR~~l~~~~~~~~l~~L~n~~~yGiF~D~~s~n~Lmd~fl~~~~~~~A~~V~~~~~lQe-~~~~~~t~~L~l~~ 182 (429)
T PF10037_consen 104 STHHALVRQCLELGAEDELLELLKNRLQYGIFPDNFSFNLLMDHFLKKGNYKSAAKVATEMMLQE-EFDNPSTQALALYS 182 (429)
T ss_pred ccHHHHHHHHHhcCCHHHHHHHHhChhhcccCCChhhHHHHHHHHhhcccHHHHHHHHHHHHHhh-ccCCchHHHHHHHH
Confidence 35568899999999999999999888888999999999999999999999999999998888877 55555665555555
Q ss_pred HHcc
Q 047767 257 YSAC 260 (666)
Q Consensus 257 ~~~~ 260 (666)
+.+.
T Consensus 183 ~~~~ 186 (429)
T PF10037_consen 183 CYKY 186 (429)
T ss_pred HHHh
Confidence 4444
No 198
>PF07079 DUF1347: Protein of unknown function (DUF1347); InterPro: IPR010764 This family consists of several hypothetical bacterial proteins of around 610 residues in length. Members of this family are highly conserved and seem to be specific to Chlamydia species. The function of this family is unknown.
Probab=97.33 E-value=0.17 Score=48.81 Aligned_cols=136 Identities=15% Similarity=0.083 Sum_probs=87.2
Q ss_pred ccCCCccchhhhhhcccCCCCCc------hhhhhHHHHhHhcCCChhhHHHHhhcCCCC-CchhHHHHHHHh--hcCCCh
Q 047767 21 TSIVPLSSSLLLDSYCQPNPQLN------IYSSNRTIDDFVKSGHLNSAKKLFDEMPAR-DMVTYNLLISGC--GKFRHP 91 (666)
Q Consensus 21 ~~~~~~~~a~~~~~~~~~~~~~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~ll~~~--~~~~~~ 91 (666)
-..+++.++..+|+.+-....-+ ....+.++++|.- .+.+.....+....+. ....|-.+..++ -+.+.+
T Consensus 17 qkq~~~~esEkifskI~~e~~~~~f~lkeEvl~grilnAffl-~nld~Me~~l~~l~~~~~~s~~l~LF~~L~~Y~~k~~ 95 (549)
T PF07079_consen 17 QKQKKFQESEKIFSKIYDEKESSPFLLKEEVLGGRILNAFFL-NNLDLMEKQLMELRQQFGKSAYLPLFKALVAYKQKEY 95 (549)
T ss_pred HHHhhhhHHHHHHHHHHHHhhcchHHHHHHHHhhHHHHHHHH-hhHHHHHHHHHHHHHhcCCchHHHHHHHHHHHHhhhH
Confidence 35678999999999887322223 2334567777753 4556555555555431 244555555544 367899
Q ss_pred hhHHHHHHHHHhC--CCCCC------------cccHHHHHHHHHcCCChHHHHHHHHHHHHhcCC----CchhhhhHHHH
Q 047767 92 KQALYLYDEMVSH--GIKES------------ASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG----LNLYIGSPLVD 153 (666)
Q Consensus 92 ~~a~~~~~~m~~~--~~~~~------------~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~~~~~ll~ 153 (666)
.+|++.+....+. +.+|. -.-=+..+.++...|++.++..+++++...=++ -+..+|+.++-
T Consensus 96 ~kal~~ls~w~~~~~~~~~~~Ld~ni~~l~~df~l~~i~a~sLIe~g~f~EgR~iLn~i~~~llkrE~~w~~d~yd~~vl 175 (549)
T PF07079_consen 96 RKALQALSVWKEQIKGTESPWLDTNIQQLFSDFFLDEIEAHSLIETGRFSEGRAILNRIIERLLKRECEWNSDMYDRAVL 175 (549)
T ss_pred HHHHHHHHHHHhhhcccccchhhhhHHHHhhHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHhhhhhcccHHHHHHHHH
Confidence 9999998887765 32221 111244567778899999999998888765443 67778887666
Q ss_pred HhHh
Q 047767 154 LYMR 157 (666)
Q Consensus 154 ~~~~ 157 (666)
.+++
T Consensus 176 mlsr 179 (549)
T PF07079_consen 176 MLSR 179 (549)
T ss_pred HHhH
Confidence 6655
No 199
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=97.23 E-value=0.00049 Score=50.38 Aligned_cols=62 Identities=15% Similarity=0.208 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHhc---CC-C---CcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILMEL---EP-V---DFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p-~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.+++.+...|...|++++|+..+++++++ .+ + -..++..++.+|...|++++|++++++..+
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~ 74 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALD 74 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 46777777888888888888888887763 12 2 255678889999999999999998887653
No 200
>PRK10803 tol-pal system protein YbgF; Provisional
Probab=97.23 E-value=0.0035 Score=57.82 Aligned_cols=96 Identities=11% Similarity=0.007 Sum_probs=68.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC---cchHHHH
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP-GGGD----CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD---FAVYSQV 626 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l 626 (666)
..|..-+..+.+.|++++|+..|+.+. ..|+ ...+-.++..|...|++++|...|+++++..|++ +.++..+
T Consensus 144 ~~Y~~A~~l~~~~~~y~~Ai~af~~fl~~yP~s~~a~~A~y~LG~~y~~~g~~~~A~~~f~~vv~~yP~s~~~~dAl~kl 223 (263)
T PRK10803 144 TDYNAAIALVQDKSRQDDAIVAFQNFVKKYPDSTYQPNANYWLGQLNYNKGKKDDAAYYFASVVKNYPKSPKAADAMFKV 223 (263)
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhHHHHHH
Confidence 334444444556788888888887665 3342 2456667777888888888888888888877764 5556666
Q ss_pred HHHHhhcCCchHHHHHHHHHHhCC
Q 047767 627 SNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 627 ~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+.++...|++++|...|+.+.+.-
T Consensus 224 g~~~~~~g~~~~A~~~~~~vi~~y 247 (263)
T PRK10803 224 GVIMQDKGDTAKAKAVYQQVIKKY 247 (263)
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHC
Confidence 788888888888888888776543
No 201
>PF13371 TPR_9: Tetratricopeptide repeat
Probab=97.22 E-value=0.0012 Score=47.56 Aligned_cols=65 Identities=17% Similarity=0.077 Sum_probs=52.7
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 561 IDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
...|.+.+++++|.++++.+. ..| +...|......+...|++++|.+.++++++..|+++.....
T Consensus 2 ~~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~~a~~~~~~g~~~~A~~~l~~~l~~~p~~~~~~~~ 68 (73)
T PF13371_consen 2 KQIYLQQEDYEEALEVLERALELDPDDPELWLQRARCLFQLGRYEEALEDLERALELSPDDPDARAL 68 (73)
T ss_pred HHHHHhCCCHHHHHHHHHHHHHhCcccchhhHHHHHHHHHhccHHHHHHHHHHHHHHCCCcHHHHHH
Confidence 456788999999999998765 445 66777788888999999999999999999999987655443
No 202
>COG3898 Uncharacterized membrane-bound protein [Function unknown]
Probab=97.22 E-value=0.2 Score=47.32 Aligned_cols=256 Identities=16% Similarity=0.120 Sum_probs=168.8
Q ss_pred cHHHHHHHHHh--cCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHH--HHH
Q 047767 382 CCNSLMTSLLH--SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAV--SCS 457 (666)
Q Consensus 382 ~~~~li~~~~~--~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~--~~~ 457 (666)
-|.+|-.++.. .|+-..|.++-.+-.+. +..|......+|.+-...-.|+.+.+.+-|+.|... |.... ...
T Consensus 84 gyqALStGliAagAGda~lARkmt~~~~~l-lssDqepLIhlLeAQaal~eG~~~~Ar~kfeAMl~d---PEtRllGLRg 159 (531)
T COG3898 84 GYQALSTGLIAAGAGDASLARKMTARASKL-LSSDQEPLIHLLEAQAALLEGDYEDARKKFEAMLDD---PETRLLGLRG 159 (531)
T ss_pred HHHHHhhhhhhhccCchHHHHHHHHHHHhh-hhccchHHHHHHHHHHHHhcCchHHHHHHHHHHhcC---hHHHHHhHHH
Confidence 36677776665 45666666655544322 566777788888875566789999999999988752 11111 223
Q ss_pred HHHHHHhhCCHHHHHHHhccCCC--CC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhc--
Q 047767 458 LMDAYSRCGHIELSHQVFEKIPS--PN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIPDKV--TFLCVLAGCN-- 529 (666)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~-- 529 (666)
|.-.--+.|..+.|.++-++.-. |. .-.+...+...|..|+|+.|+++++.-++.. +.++.. .-..|+.+-.
T Consensus 160 LyleAqr~GareaAr~yAe~Aa~~Ap~l~WA~~AtLe~r~~~gdWd~AlkLvd~~~~~~vie~~~aeR~rAvLLtAkA~s 239 (531)
T COG3898 160 LYLEAQRLGAREAARHYAERAAEKAPQLPWAARATLEARCAAGDWDGALKLVDAQRAAKVIEKDVAERSRAVLLTAKAMS 239 (531)
T ss_pred HHHHHHhcccHHHHHHHHHHHHhhccCCchHHHHHHHHHHhcCChHHHHHHHHHHHHHHhhchhhHHHHHHHHHHHHHHH
Confidence 33334577888888888776653 33 4567888999999999999999998877643 455543 2233333211
Q ss_pred -CCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCChHHHH
Q 047767 530 -HSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQT-PGGGDCMMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 530 -~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~ 606 (666)
-..+...|...-.+.. .+.|| ...-..-..+|.+.|+..++-.+++.+ +..|.+.++. +....+.|+.....
T Consensus 240 ~ldadp~~Ar~~A~~a~---KL~pdlvPaav~AAralf~d~~~rKg~~ilE~aWK~ePHP~ia~--lY~~ar~gdta~dR 314 (531)
T COG3898 240 LLDADPASARDDALEAN---KLAPDLVPAAVVAARALFRDGNLRKGSKILETAWKAEPHPDIAL--LYVRARSGDTALDR 314 (531)
T ss_pred HhcCChHHHHHHHHHHh---hcCCccchHHHHHHHHHHhccchhhhhhHHHHHHhcCCChHHHH--HHHHhcCCCcHHHH
Confidence 1123444544444333 67888 333444568899999999999999865 4667666653 23344556654332
Q ss_pred -HHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 607 -RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 607 -~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
+-.+++..+.|++......++.+-...|++..|..--+..
T Consensus 315 lkRa~~L~slk~nnaes~~~va~aAlda~e~~~ARa~Aeaa 355 (531)
T COG3898 315 LKRAKKLESLKPNNAESSLAVAEAALDAGEFSAARAKAEAA 355 (531)
T ss_pred HHHHHHHHhcCccchHHHHHHHHHHHhccchHHHHHHHHHH
Confidence 4445556689999999999999999999998887665544
No 203
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=97.21 E-value=0.0043 Score=58.30 Aligned_cols=129 Identities=14% Similarity=0.044 Sum_probs=92.5
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHh---HHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSM---KSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-------GGG-DCM 587 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~ 587 (666)
.|..|.+.|.-.|+++.|+...+.- .+.+|-+.. ...+..|.+++.-.|+++.|.+.++... .+. ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~LAielg~r~vEAQ 276 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNLAIELGNRTVEAQ 276 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHHHHHhcchhHHHH
Confidence 4667777777888999998776542 233454443 6778889999999999999999887432 111 233
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHh----cC--CCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILME----LE--PVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.--+|..+|....+++.|+...++-+. +. -....+++.|+.+|...|..++|+.+.++-.+
T Consensus 277 scYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 277 SCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 334677778777888999988877554 22 22456788999999999999999988776553
No 204
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.18 E-value=0.014 Score=51.49 Aligned_cols=134 Identities=9% Similarity=-0.038 Sum_probs=94.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCc-----hHHHH
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-----QHYSC 559 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~ 559 (666)
.-+.++..+.-.|.+.-.+.++.+.++..-+-+......+.+.-.+.|+.+.|..+|+...+. .-..+. -....
T Consensus 179 Vmy~~~~~llG~kEy~iS~d~~~~vi~~~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~-~~kL~~~q~~~~V~~n 257 (366)
T KOG2796|consen 179 VMYSMANCLLGMKEYVLSVDAYHSVIKYYPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKV-TQKLDGLQGKIMVLMN 257 (366)
T ss_pred HHHHHHHHHhcchhhhhhHHHHHHHHHhCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHH-HhhhhccchhHHHHhh
Confidence 445566666777888888888888888655556667778888888889999999999877654 223333 33333
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCC-C-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 560 MIDMLGRAGILDKAEELLQQTPGG-G-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
....|.-++++.+|...+.+++.. | +....+.-.-...-.|+...|++..+.+.+..|..
T Consensus 258 ~a~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~~ 319 (366)
T KOG2796|consen 258 SAFLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPRH 319 (366)
T ss_pred hhhheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCcc
Confidence 445566777888888888887732 2 45555555555556678888888888888888863
No 205
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.18 E-value=0.0016 Score=55.99 Aligned_cols=99 Identities=14% Similarity=0.177 Sum_probs=77.5
Q ss_pred hHHHHhhcC--CCCCchhHHHHHHHhhc-----CCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcC-----------
Q 047767 62 SAKKLFDEM--PARDMVTYNLLISGCGK-----FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNA----------- 123 (666)
Q Consensus 62 ~A~~~~~~~--~~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~----------- 123 (666)
.-...|+.. ..++-.+|..++..|.+ .|..+=....++.|.+.|+.-|..+|+.||+.+=+.
T Consensus 32 ~~~~~f~~~~~~~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPKg~fvp~n~fQ~~ 111 (228)
T PF06239_consen 32 PHEELFERAPGQAKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPKGKFVPRNFFQAE 111 (228)
T ss_pred chHHHHHHHhhccccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCCCCcccccHHHHH
Confidence 345566666 45677788888887754 577888888899999999999999999999987542
Q ss_pred -----CChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCC
Q 047767 124 -----GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160 (666)
Q Consensus 124 -----~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 160 (666)
.+.+-|++++++|...|+-||..++..|++.+++.+.
T Consensus 112 F~hyp~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 112 FMHYPRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred hccCcHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 2346788889999999998988888888888877654
No 206
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=97.17 E-value=0.0029 Score=59.78 Aligned_cols=96 Identities=13% Similarity=0.063 Sum_probs=80.7
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
..++..|.-+|.+.+++.+|+...+.+. .+++....-.-..++...|+++.|+..|+++++++|.|-.+...|+.+-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P~Nka~~~el~~l~~ 336 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEPSNKAARAELIKLKQ 336 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCCCcHHHHHHHHHHHH
Confidence 4567888999999999999999998765 45577777788889999999999999999999999999999988888887
Q ss_pred hcCCch-HHHHHHHHHHhC
Q 047767 632 EIGEFE-VSMQIRETALAR 649 (666)
Q Consensus 632 ~~g~~~-~A~~~~~~~~~~ 649 (666)
+..++. ...+.|..|-..
T Consensus 337 k~~~~~~kekk~y~~mF~k 355 (397)
T KOG0543|consen 337 KIREYEEKEKKMYANMFAK 355 (397)
T ss_pred HHHHHHHHHHHHHHHHhhc
Confidence 766554 447888888643
No 207
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.13 E-value=0.4 Score=49.48 Aligned_cols=136 Identities=10% Similarity=-0.117 Sum_probs=75.0
Q ss_pred HcCCCCCHhhHHH-----HHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCC---hHHHHHHhccCCC
Q 047767 204 AEGVEPNGLSFCY-----MVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS---LIEAKKSFDFIPV 275 (666)
Q Consensus 204 ~~~~~p~~~t~~~-----ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~~~~~~~~~ 275 (666)
.-|++.+..-|.. +|.-+...+.+..|.++-..+...- ... ..++.....-+.+..+ -+.+..+-+++..
T Consensus 425 ~~gIplT~~qy~~l~~~~vi~Rl~~r~~Y~vaIQva~~l~~p~-~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~ 502 (829)
T KOG2280|consen 425 RIGIPLTHEQYRHLSEEVVIDRLVDRHLYSVAIQVAKLLNLPE-SQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSA 502 (829)
T ss_pred ccCccccHHHHhhhchhhhhHHHHhcchhHHHHHHHHHhCCcc-ccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhcc
Confidence 3466665555444 3445556677777777766654322 122 5566666666665532 2233333334433
Q ss_pred --CChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCC----CCChhhHHHHHHHHhccCChhhHHHHHHHHHH
Q 047767 276 --DDVISWNSIVSIYADYDLIFDALELFFRMQLCRK----RPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341 (666)
Q Consensus 276 --~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~----~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (666)
....+|..+..-....|+.+-|..+++.=...+- -.+..-+...+.-+...|+.+....++-.+..
T Consensus 503 ~~~~~iSy~~iA~~Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~ 574 (829)
T KOG2280|consen 503 KLTPGISYAAIARRAYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKN 574 (829)
T ss_pred cCCCceeHHHHHHHHHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHH
Confidence 3556777777777777888888777764322211 11223345556666677777766666655544
No 208
>PF05843 Suf: Suppressor of forked protein (Suf); InterPro: IPR008847 This domain consists of several eukaryotic suppressor of forked (Suf) like proteins. The Drosophila melanogaster suppressor of forked [Su(f)] protein shares homology with the Saccharomyces cerevisiae RNA14 protein and the 77 kDa subunit of Homo sapiens cleavage stimulation factor, which are proteins involved in mRNA 3' end formation. This suggests a role for Su(f) in mRNA 3' end formation in Drosophila. The su(f) gene produces three transcripts; two of them are polyadenylated at the end of the transcription unit, and one is a truncated transcript, polyadenylated in intron 4. It is thought that su(f) plays a role in the regulation of poly(A) site utilisation and the GU-rich sequence is important for this regulation to occur [].; GO: 0006397 mRNA processing, 0005634 nucleus; PDB: 2L9B_B 2OND_B 2OOE_A 4E85_B 4EBA_C 4E6H_A 2UY1_B.
Probab=97.11 E-value=0.0041 Score=58.57 Aligned_cols=129 Identities=12% Similarity=0.102 Sum_probs=100.5
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh-cCChHHHHHHHHhCC--CCCCHHHHHHHHHH
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR-AGILDKAEELLQQTP--GGGDCMMWSSLLRS 595 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~-~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~ 595 (666)
.+|..++..+.+.+..+.|+.+|.++... -..+..+|...+..-.. .++.+.|.++|+... ...+...|...+.-
T Consensus 2 ~v~i~~m~~~~r~~g~~~aR~vF~~a~~~--~~~~~~vy~~~A~~E~~~~~d~~~A~~Ife~glk~f~~~~~~~~~Y~~~ 79 (280)
T PF05843_consen 2 LVWIQYMRFMRRTEGIEAARKVFKRARKD--KRCTYHVYVAYALMEYYCNKDPKRARKIFERGLKKFPSDPDFWLEYLDF 79 (280)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHCC--CCS-THHHHHHHHHHHHTCS-HHHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCChHHHHHHHHHHHcC--CCCCHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHH
Confidence 46788888888888999999999999853 23345666666665334 567777999999765 44578889999988
Q ss_pred HHhhCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 596 CRVHGNEIIGRRVANILMELEPVDF---AVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 596 ~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
+...++.+.|..+|++++..-|.+. ..|...+..=.+.|+.+.+.++.+++.+.
T Consensus 80 l~~~~d~~~aR~lfer~i~~l~~~~~~~~iw~~~i~fE~~~Gdl~~v~~v~~R~~~~ 136 (280)
T PF05843_consen 80 LIKLNDINNARALFERAISSLPKEKQSKKIWKKFIEFESKYGDLESVRKVEKRAEEL 136 (280)
T ss_dssp HHHTT-HHHHHHHHHHHCCTSSCHHHCHHHHHHHHHHHHHHS-HHHHHHHHHHHHHH
T ss_pred HHHhCcHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 9999999999999999999877654 57888999999999999999999888764
No 209
>PF12688 TPR_5: Tetratrico peptide repeat
Probab=97.09 E-value=0.012 Score=46.61 Aligned_cols=89 Identities=15% Similarity=0.126 Sum_probs=63.3
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHH
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKV--TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMID 562 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~ 562 (666)
+..++-..|+.++|+.+|++....|...... .+..+..++...|++++|..+++.....+ |+ ......+.-
T Consensus 7 ~A~a~d~~G~~~~Ai~~Y~~Al~~gL~~~~~~~a~i~lastlr~LG~~deA~~~L~~~~~~~---p~~~~~~~l~~f~Al 83 (120)
T PF12688_consen 7 LAWAHDSLGREEEAIPLYRRALAAGLSGADRRRALIQLASTLRNLGRYDEALALLEEALEEF---PDDELNAALRVFLAL 83 (120)
T ss_pred HHHHHHhcCCHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC---CCccccHHHHHHHHH
Confidence 3455667888889999998888887665532 56667778888889999999888887652 33 222333445
Q ss_pred HHHhcCChHHHHHHHHhC
Q 047767 563 MLGRAGILDKAEELLQQT 580 (666)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~ 580 (666)
++...|+.++|++.+-..
T Consensus 84 ~L~~~gr~~eAl~~~l~~ 101 (120)
T PF12688_consen 84 ALYNLGRPKEALEWLLEA 101 (120)
T ss_pred HHHHCCCHHHHHHHHHHH
Confidence 677888888888877543
No 210
>PF06239 ECSIT: Evolutionarily conserved signalling intermediate in Toll pathway; InterPro: IPR010418 Activation of NF-kappaB as a consequence of signalling through the Toll and IL-1 receptors is a major element of innate immune responses. ECSIT plays an important role in signalling to NF-kappaB, functioning as the intermediate in the signalling pathways between TRAF-6 and MEKK-1 [].
Probab=97.09 E-value=0.0042 Score=53.59 Aligned_cols=105 Identities=12% Similarity=0.179 Sum_probs=78.5
Q ss_pred CCCcccHHHHHHHHHc-----CCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHH
Q 047767 107 KESASTFSSVLSVCSN-----AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNL 181 (666)
Q Consensus 107 ~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 181 (666)
..+..+|..++..+.. .|.++-....+..|.+.|+..|..+|+.|++.+=+ |.+- |. ..+.+
T Consensus 44 ~k~K~~F~~~V~~f~~~~~~RRGHVeFI~aAL~~M~efgv~kDL~~Y~~LLDvFPK-g~fv-----------p~-n~fQ~ 110 (228)
T PF06239_consen 44 AKDKATFLEAVDIFKQRDVRRRGHVEFIYAALKKMDEFGVEKDLEVYKALLDVFPK-GKFV-----------PR-NFFQA 110 (228)
T ss_pred cccHHHHHHHHHHHHhcCCCCcChHHHHHHHHHHHHHcCCcccHHHHHHHHHhCCC-CCcc-----------cc-cHHHH
Confidence 3577888888888764 57888899999999999999999999999998754 2221 10 01111
Q ss_pred HHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCC
Q 047767 182 MLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGML 226 (666)
Q Consensus 182 li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~ 226 (666)
+...| -.+-+-|++++++|...|+.||..|+..++..+++.+.
T Consensus 111 ~F~hy--p~Qq~c~i~lL~qME~~gV~Pd~Et~~~ll~iFG~~s~ 153 (228)
T PF06239_consen 111 EFMHY--PRQQECAIDLLEQMENNGVMPDKETEQMLLNIFGRKSH 153 (228)
T ss_pred HhccC--cHHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHhccccH
Confidence 11111 23457789999999999999999999999999987664
No 211
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=97.00 E-value=0.37 Score=46.54 Aligned_cols=89 Identities=11% Similarity=0.164 Sum_probs=64.3
Q ss_pred hhhhcccCCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCCCC---chhHHHHHHHhhcCCChhhHHHHHHHHHhCCCC
Q 047767 31 LLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARD---MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIK 107 (666)
Q Consensus 31 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~ 107 (666)
++.+.+ +..+.|+.+|-.||.-|.-+|..++..+++++|..|- ..+|..-|++=....++.....+|.+......
T Consensus 30 rLRerI-kdNPtnI~S~fqLiq~~~tq~s~~~~re~yeq~~~pfp~~~~aw~ly~s~ELA~~df~svE~lf~rCL~k~l- 107 (660)
T COG5107 30 RLRERI-KDNPTNILSYFQLIQYLETQESMDAEREMYEQLSSPFPIMEHAWRLYMSGELARKDFRSVESLFGRCLKKSL- 107 (660)
T ss_pred HHHHHh-hcCchhHHHHHHHHHHHhhhhhHHHHHHHHHHhcCCCccccHHHHHHhcchhhhhhHHHHHHHHHHHHhhhc-
Confidence 333333 4556788899999999999999999999999998774 34677777777777788888888888776543
Q ss_pred CCcccHHHHHHHHHc
Q 047767 108 ESASTFSSVLSVCSN 122 (666)
Q Consensus 108 ~~~~~~~~ll~~~~~ 122 (666)
+...|..-+....+
T Consensus 108 -~ldLW~lYl~YIRr 121 (660)
T COG5107 108 -NLDLWMLYLEYIRR 121 (660)
T ss_pred -cHhHHHHHHHHHHh
Confidence 45555555554443
No 212
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.96 E-value=0.026 Score=50.41 Aligned_cols=150 Identities=15% Similarity=0.078 Sum_probs=77.4
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCC-CC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHh-
Q 047767 491 NGYSRNGMGREALDMLEVMIQRGLI-PD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGR- 566 (666)
Q Consensus 491 ~~~~~~~~~~~a~~~~~~m~~~g~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~- 566 (666)
..+...|++.+|...|+.+....-. |- ......++.++.+.|+++.|...++...+.+.-.|. ...+-.++.++..
T Consensus 13 ~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~~~~ 92 (203)
T PF13525_consen 13 LEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSYYKQ 92 (203)
T ss_dssp HHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHh
Confidence 3344556666666666666553211 11 113344555556666666666666666655333333 1222222222111
Q ss_pred ----------cCChHHHHHHHHhC----CCCC---CHH------------HHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 567 ----------AGILDKAEELLQQT----PGGG---DCM------------MWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 567 ----------~g~~~~A~~~~~~~----~~~~---~~~------------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
.+...+|...|+.+ +..+ +.. .-..+..-|.+.|.+..|..-++.+++..|
T Consensus 93 ~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~~yp 172 (203)
T PF13525_consen 93 IPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIENYP 172 (203)
T ss_dssp HHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHHHST
T ss_pred CccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCC
Confidence 11233444444433 2222 100 011244558899999999999999999999
Q ss_pred CCcc---hHHHHHHHHhhcCCchHHH
Q 047767 618 VDFA---VYSQVSNFYSEIGEFEVSM 640 (666)
Q Consensus 618 ~~~~---~~~~l~~~~~~~g~~~~A~ 640 (666)
+.+. +...++.+|.+.|..+.|.
T Consensus 173 ~t~~~~~al~~l~~~y~~l~~~~~a~ 198 (203)
T PF13525_consen 173 DTPAAEEALARLAEAYYKLGLKQAAD 198 (203)
T ss_dssp TSHHHHHHHHHHHHHHHHTT-HHHHH
T ss_pred CCchHHHHHHHHHHHHHHhCChHHHH
Confidence 8643 4567889999999988544
No 213
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=96.95 E-value=0.062 Score=42.10 Aligned_cols=141 Identities=12% Similarity=0.159 Sum_probs=89.5
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHH
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK 572 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 572 (666)
..-.|..++..+++.+.... .+..-+|.++--....-+-+-..++++.+-.-|.+.| -.....++.+|+..|..
T Consensus 12 ~ildG~V~qGveii~k~v~S---sni~E~NWvICNiiDaa~C~yvv~~LdsIGkiFDis~-C~NlKrVi~C~~~~n~~-- 85 (161)
T PF09205_consen 12 RILDGDVKQGVEIIEKTVNS---SNIKEYNWVICNIIDAADCDYVVETLDSIGKIFDISK-CGNLKRVIECYAKRNKL-- 85 (161)
T ss_dssp HHHTT-HHHHHHHHHHHHHH---S-HHHHTHHHHHHHHH--HHHHHHHHHHHGGGS-GGG--S-THHHHHHHHHTT----
T ss_pred HHHhchHHHHHHHHHHHcCc---CCccccceeeeecchhhchhHHHHHHHHHhhhcCchh-hcchHHHHHHHHHhcch--
Confidence 34568888999998888763 2444566666555555566677777777754433222 22234455666655543
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 573 AEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 573 A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
.......+.+...+|.-++-.++++.+.+.+..+|.....++.+|.+.|+..+|-++++++-++|++
T Consensus 86 -------------se~vD~ALd~lv~~~kkDqLdki~~~l~kn~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 86 -------------SEYVDLALDILVKQGKKDQLDKIYNELKKNEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp --------------HHHHHHHHHHHHTT-HHHHHHHHHHH-----S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred -------------HHHHHHHHHHHHHhccHHHHHHHHHHHhhccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3334455677788999999899999988766668899999999999999999999999999999985
No 214
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=96.95 E-value=0.015 Score=46.88 Aligned_cols=90 Identities=16% Similarity=0.036 Sum_probs=67.0
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcch---HHHHHHHH
Q 047767 559 CMIDMLGRAGILDKAEELLQQTP----GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV---YSQVSNFY 630 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~ 630 (666)
.-.....+.|++++|++.|+.+. ..| ....-..|+.+|.+.+++++|...+++.++++|.++.+ ++..|-++
T Consensus 15 ~~a~~~l~~~~Y~~A~~~le~L~~ryP~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~vdYa~Y~~gL~~ 94 (142)
T PF13512_consen 15 QEAQEALQKGNYEEAIKQLEALDTRYPFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPNVDYAYYMRGLSY 94 (142)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHhcCCCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCCccHHHHHHHHHH
Confidence 34555668899999999998776 222 44566678889999999999999999999999887544 55566666
Q ss_pred hhcCC---------------chHHHHHHHHHHh
Q 047767 631 SEIGE---------------FEVSMQIRETALA 648 (666)
Q Consensus 631 ~~~g~---------------~~~A~~~~~~~~~ 648 (666)
..+.. ..+|..-|+.+.+
T Consensus 95 ~~~~~~~~~~~~~~drD~~~~~~A~~~f~~lv~ 127 (142)
T PF13512_consen 95 YEQDEGSLQSFFRSDRDPTPARQAFRDFEQLVR 127 (142)
T ss_pred HHHhhhHHhhhcccccCcHHHHHHHHHHHHHHH
Confidence 66655 5677777776654
No 215
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.94 E-value=0.62 Score=48.17 Aligned_cols=325 Identities=11% Similarity=0.121 Sum_probs=178.2
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCCh---hhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 047767 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV---YFGKQIHGYVTKLGFDHGSVHVQSALTDM 358 (666)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (666)
..+|.-+...+.+..|.++-..+...-..- ...|........+..+. +.+..+-+.+... . .+...|..++.-
T Consensus 441 ~~vi~Rl~~r~~Y~vaIQva~~l~~p~~~~-~~Vl~~Wa~~kI~~~d~~d~~vld~I~~kls~~-~--~~~iSy~~iA~~ 516 (829)
T KOG2280|consen 441 EVVIDRLVDRHLYSVAIQVAKLLNLPESQG-DRVLLEWARRKIKQSDKMDEEVLDKIDEKLSAK-L--TPGISYAAIARR 516 (829)
T ss_pred hhhhHHHHhcchhHHHHHHHHHhCCccccc-cHHHHHHHHHHHhccCccchHHHHHHHHHhccc-C--CCceeHHHHHHH
Confidence 345667777788888888877774322222 45565555555554322 2222222222221 1 244556666777
Q ss_pred HHhcCChHHHHHHhccCCCC--------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcc
Q 047767 359 YGKCNVIESSVAVFESAPGR--------SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430 (666)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~--------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 430 (666)
.-.+|+.+.|..+++.=+.. +..-+...+.-..+.|+.+-...++-+|..+ .+...|...+
T Consensus 517 Ay~~GR~~LA~kLle~E~~~~~qV~lLL~m~~~~~AL~kaies~d~~Li~~Vllhlk~~---~~~s~l~~~l-------- 585 (829)
T KOG2280|consen 517 AYQEGRFELARKLLELEPRSGEQVPLLLKMKDSSLALKKAIESGDTDLIIQVLLHLKNK---LNRSSLFMTL-------- 585 (829)
T ss_pred HHhcCcHHHHHHHHhcCCCccchhHHHhccchHHHHHHHHHhcCCchhHHHHHHHHHHH---HHHHHHHHHH--------
Confidence 77789999998888754432 2223555666677778877777777666553 1111111111
Q ss_pred cchhhHHHHHHHHHH-hCCCCchHHHHHHHHHHHhhCCHHHHHHHhc--cC-----CCCCHHHHHHHHHHHHHcCCh---
Q 047767 431 ANLGSCRLLHCCAIK-SGFESNIAVSCSLMDAYSRCGHIELSHQVFE--KI-----PSPNVVCFTSIMNGYSRNGMG--- 499 (666)
Q Consensus 431 ~~~~~a~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~--~~-----~~~~~~~~~~li~~~~~~~~~--- 499 (666)
.+...|..++....+ .+... +-+ +-+.++-..+...|. .. ..+-.........++.+....
T Consensus 586 ~~~p~a~~lY~~~~r~~~~~~-------l~d-~y~q~dn~~~~a~~~~q~~~~~~~~~~r~~~lk~~a~~~a~sk~~s~e 657 (829)
T KOG2280|consen 586 RNQPLALSLYRQFMRHQDRAT-------LYD-FYNQDDNHQALASFHLQASYAAETIEGRIPALKTAANAFAKSKEKSFE 657 (829)
T ss_pred HhchhhhHHHHHHHHhhchhh-------hhh-hhhcccchhhhhhhhhhhhhhhhhhcccchhHHHHHHHHhhhhhhhhH
Confidence 111222222222221 11100 000 111111111111111 10 011112222333444443331
Q ss_pred -------hHHHHHHHHHHH-cCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChH
Q 047767 500 -------REALDMLEVMIQ-RGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571 (666)
Q Consensus 500 -------~~a~~~~~~m~~-~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 571 (666)
.+-+++.+.+.. .|..-...+.+--+.-+...|+..+|.++-.+.+ -||...|..-+.+++..++|+
T Consensus 658 ~ka~ed~~kLl~lQ~~Le~q~~~~f~dlSl~dTv~~li~~g~~k~a~ql~~~Fk-----ipdKr~~wLk~~aLa~~~kwe 732 (829)
T KOG2280|consen 658 AKALEDQMKLLKLQRTLEDQFGGSFVDLSLHDTVTTLILIGQNKRAEQLKSDFK-----IPDKRLWWLKLTALADIKKWE 732 (829)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHccchHHHHHHHHhcC-----CcchhhHHHHHHHHHhhhhHH
Confidence 112222233322 2333444456666777788889899888877664 488888888889999999999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHH
Q 047767 572 KAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645 (666)
Q Consensus 572 ~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 645 (666)
+-+++-+.... +.-|.-...+|.+.|+.++|.+..-+.-.+ ...+.+|.+.|++.+|.++--+
T Consensus 733 eLekfAkskks---PIGy~PFVe~c~~~~n~~EA~KYiprv~~l--------~ekv~ay~~~~~~~eAad~A~~ 795 (829)
T KOG2280|consen 733 ELEKFAKSKKS---PIGYLPFVEACLKQGNKDEAKKYIPRVGGL--------QEKVKAYLRVGDVKEAADLAAE 795 (829)
T ss_pred HHHHHHhccCC---CCCchhHHHHHHhcccHHHHhhhhhccCCh--------HHHHHHHHHhccHHHHHHHHHH
Confidence 88888777762 445666778899999999988876553221 1678889999999999887543
No 216
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=96.93 E-value=0.0029 Score=53.13 Aligned_cols=68 Identities=13% Similarity=0.112 Sum_probs=53.4
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH-----hCCCCcCC
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL-----ARKLTRDI 655 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~ 655 (666)
....++..+...|++++|+..+++++..+|.+...|..|+.+|...|+..+|+++|+++. +.|+.|.+
T Consensus 64 ~~~~l~~~~~~~~~~~~a~~~~~~~l~~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~ 136 (146)
T PF03704_consen 64 ALERLAEALLEAGDYEEALRLLQRALALDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSP 136 (146)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----H
T ss_pred HHHHHHHHHHhccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCH
Confidence 445566677889999999999999999999999999999999999999999999999875 34776654
No 217
>PRK11619 lytic murein transglycosylase; Provisional
Probab=96.89 E-value=0.81 Score=48.64 Aligned_cols=113 Identities=11% Similarity=-0.061 Sum_probs=51.7
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHH
Q 047767 497 GMGREALDMLEVMIQRG-LIPDKV--TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573 (666)
Q Consensus 497 ~~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 573 (666)
.+.+.|..++....... +.+... .+..+.......+..+++...++..... ..+......-+....+.++++.+
T Consensus 255 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~lA~~~a~~~~~~~a~~w~~~~~~~---~~~~~~~e~r~r~Al~~~dw~~~ 331 (644)
T PRK11619 255 QDAENARLMIPSLVRAQKLNEDQRQELRDIVAWRLMGNDVTDEQAKWRDDVIMR---SQSTSLLERRVRMALGTGDRRGL 331 (644)
T ss_pred hCHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHhccCCHHHHHHHHhcccc---cCCcHHHHHHHHHHHHccCHHHH
Confidence 44566666666553322 222221 2333333333332234555555543321 22344444444455566666666
Q ss_pred HHHHHhCCC--CCCHHHHHHHHHHHHhhCChHHHHHHHHHH
Q 047767 574 EELLQQTPG--GGDCMMWSSLLRSCRVHGNEIIGRRVANIL 612 (666)
Q Consensus 574 ~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 612 (666)
...+..|+. .....-.--+.+++...|+.++|...|+++
T Consensus 332 ~~~i~~L~~~~~~~~rw~YW~aRa~~~~g~~~~A~~~~~~~ 372 (644)
T PRK11619 332 NTWLARLPMEAKEKDEWRYWQADLLLEQGRKAEAEEILRQL 372 (644)
T ss_pred HHHHHhcCHhhccCHhhHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 666666541 111122222444545566666666666665
No 218
>PRK11906 transcriptional regulator; Provisional
Probab=96.87 E-value=0.015 Score=56.63 Aligned_cols=154 Identities=9% Similarity=0.052 Sum_probs=95.4
Q ss_pred HHHHHHHHHcC-----ChhHHHHHHHHHHH-cCCCCCHH-HHHHHHHHhcC---------CCcHHHHHHHHHHhHHhhCC
Q 047767 487 TSIMNGYSRNG-----MGREALDMLEVMIQ-RGLIPDKV-TFLCVLAGCNH---------SGMVKEGQLVFNSMKSVYGI 550 (666)
Q Consensus 487 ~~li~~~~~~~-----~~~~a~~~~~~m~~-~g~~p~~~-~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~ 550 (666)
..++++..... ..+.|+.+|.+... ..+.|+.. .|..+..++.. .....+|.+.-++..+. -
T Consensus 257 d~ylrg~~~~~~~t~~~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAvel--d 334 (458)
T PRK11906 257 DEMLAGKKELYDFTPESIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDI--T 334 (458)
T ss_pred HHHHHHHHHhhccCHHHHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhc--C
Confidence 44555544321 34567888888872 22677655 55555554321 12344555666666543 1
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH-
Q 047767 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS- 627 (666)
Q Consensus 551 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~- 627 (666)
+-|+.....+..++.-.|+++.|..+|++.. ..| ....|-.....+...|+.++|.+.++++++++|....+-..-.
T Consensus 335 ~~Da~a~~~~g~~~~~~~~~~~a~~~f~rA~~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~ 414 (458)
T PRK11906 335 TVDGKILAIMGLITGLSGQAKVSHILFEQAKIHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKEC 414 (458)
T ss_pred CCCHHHHHHHHHHHHhhcchhhHHHHHHHHhhcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHH
Confidence 3336666677777777777888888888755 455 4566666666777788888888888888888887654443322
Q ss_pred -HHHhhcCCchHHHHHH
Q 047767 628 -NFYSEIGEFEVSMQIR 643 (666)
Q Consensus 628 -~~~~~~g~~~~A~~~~ 643 (666)
..|+.. ..++|+.+|
T Consensus 415 ~~~~~~~-~~~~~~~~~ 430 (458)
T PRK11906 415 VDMYVPN-PLKNNIKLY 430 (458)
T ss_pred HHHHcCC-chhhhHHHH
Confidence 245554 457777765
No 219
>COG4235 Cytochrome c biogenesis factor [Posttranslational modification, protein turnover, chaperones]
Probab=96.87 E-value=0.03 Score=51.14 Aligned_cols=109 Identities=17% Similarity=0.116 Sum_probs=86.0
Q ss_pred CC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcC---ChHHHHHHHHhCC-CCC-CHH
Q 047767 515 IP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAG---ILDKAEELLQQTP-GGG-DCM 587 (666)
Q Consensus 515 ~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~~-~~~ 587 (666)
.| |...|..|...|...|+.+.|..-|....+. .|+ +..+..+..++..+. ...++..+|+++. ..| |..
T Consensus 152 nP~d~egW~~Lg~~ym~~~~~~~A~~AY~~A~rL---~g~n~~~~~g~aeaL~~~a~~~~ta~a~~ll~~al~~D~~~ir 228 (287)
T COG4235 152 NPGDAEGWDLLGRAYMALGRASDALLAYRNALRL---AGDNPEILLGLAEALYYQAGQQMTAKARALLRQALALDPANIR 228 (287)
T ss_pred CCCCchhHHHHHHHHHHhcchhHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCCcccHHHHHHHHHHHhcCCccHH
Confidence 44 5568999999999999999999999999864 444 777777887776543 4678889999876 444 777
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 627 (666)
....|...+...|++.+|...|+.+++..|.+. .+..++
T Consensus 229 al~lLA~~afe~g~~~~A~~~Wq~lL~~lp~~~-~rr~~i 267 (287)
T COG4235 229 ALSLLAFAAFEQGDYAEAAAAWQMLLDLLPADD-PRRSLI 267 (287)
T ss_pred HHHHHHHHHHHcccHHHHHHHHHHHHhcCCCCC-chHHHH
Confidence 887888889999999999999999999998764 343333
No 220
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=96.86 E-value=0.12 Score=49.78 Aligned_cols=160 Identities=14% Similarity=0.089 Sum_probs=103.4
Q ss_pred HHHHHHHhhCCHHHHHHHhccCCCC-------CHHHHHHHHHHHHH---cCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIPSP-------NVVCFTSIMNGYSR---NGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~~-------~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 526 (666)
.++-.|-...+++...++.+.+..+ ....-....-++.+ .|+.++|+.++..+....-.++..+|..+..
T Consensus 146 ~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~~~~~~~d~~gL~GR 225 (374)
T PF13281_consen 146 NLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLESDENPDPDTLGLLGR 225 (374)
T ss_pred HHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhccCCCChHHHHHHHH
Confidence 4555677888888888888888752 22222334455666 7899999999988666656777778777665
Q ss_pred Hhc---------CCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCC-hH---HHHHHH---HhC-----C--CC
Q 047767 527 GCN---------HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI-LD---KAEELL---QQT-----P--GG 583 (666)
Q Consensus 527 ~~~---------~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~---~A~~~~---~~~-----~--~~ 583 (666)
.|- .....+.|+..|.+.- .++|+..+=-.++-.+...|. .+ +..++. ... . ..
T Consensus 226 IyKD~~~~s~~~d~~~ldkAi~~Y~kgF---e~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 226 IYKDLFLESNFTDRESLDKAIEWYRKGF---EIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHcCccchHHHHHHHHHHHHHH---cCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 542 2334778888888765 456774443333444444443 22 222222 111 1 12
Q ss_pred CCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 584 GDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
.+--.+.+++.++.-.||.+.|.+.++++.+..|+.
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l~~~~ 338 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKLKPPA 338 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhcCCcc
Confidence 244566678888999999999999999999998763
No 221
>KOG2796 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.81 E-value=0.12 Score=46.01 Aligned_cols=130 Identities=11% Similarity=0.040 Sum_probs=77.9
Q ss_pred HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCC--------CCCHHHHHHHH
Q 047767 522 LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG--------GGDCMMWSSLL 593 (666)
Q Consensus 522 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--------~~~~~~~~~l~ 593 (666)
+.++..+.-.|.+.-....+.++++. .-+.++.....|++.-...|+.+.|...|+++.. ...........
T Consensus 181 y~~~~~llG~kEy~iS~d~~~~vi~~-~~e~~p~L~s~Lgr~~MQ~GD~k~a~~yf~~vek~~~kL~~~q~~~~V~~n~a 259 (366)
T KOG2796|consen 181 YSMANCLLGMKEYVLSVDAYHSVIKY-YPEQEPQLLSGLGRISMQIGDIKTAEKYFQDVEKVTQKLDGLQGKIMVLMNSA 259 (366)
T ss_pred HHHHHHHhcchhhhhhHHHHHHHHHh-CCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHhhhhccchhHHHHhhhh
Confidence 34444555556666666666666664 3344566666677777777777777777764431 11222222223
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
..+.-.+|+..|...+.++.+.+|.++...++-+-+..-.|+..+|++..+.|++.-+.
T Consensus 260 ~i~lg~nn~a~a~r~~~~i~~~D~~~~~a~NnKALcllYlg~l~DAiK~~e~~~~~~P~ 318 (366)
T KOG2796|consen 260 FLHLGQNNFAEAHRFFTEILRMDPRNAVANNNKALCLLYLGKLKDALKQLEAMVQQDPR 318 (366)
T ss_pred hheecccchHHHHHHHhhccccCCCchhhhchHHHHHHHHHHHHHHHHHHHHHhccCCc
Confidence 33445566777777777777777777766666666666677777777777776654433
No 222
>PRK10866 outer membrane biogenesis protein BamD; Provisional
Probab=96.76 E-value=0.27 Score=45.14 Aligned_cols=21 Identities=24% Similarity=0.355 Sum_probs=11.6
Q ss_pred HHHhcCChhHHHHHHHHHHHc
Q 047767 389 SLLHSGNIKDAVEMFGFMVDE 409 (666)
Q Consensus 389 ~~~~~~~~~~a~~~~~~m~~~ 409 (666)
.+...|++++|.+.|+++...
T Consensus 41 ~~~~~g~y~~Ai~~f~~l~~~ 61 (243)
T PRK10866 41 QKLQDGNWKQAITQLEALDNR 61 (243)
T ss_pred HHHHCCCHHHHHHHHHHHHHh
Confidence 344455666666666665553
No 223
>KOG0550 consensus Molecular chaperone (DnaJ superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=96.72 E-value=0.6 Score=44.71 Aligned_cols=84 Identities=11% Similarity=0.023 Sum_probs=49.6
Q ss_pred HHhhCCHHHHHHHhccCCC-------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCc
Q 047767 462 YSRCGHIELSHQVFEKIPS-------PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGM 533 (666)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~ 533 (666)
..+.|++..|.+.+.+... ++...|.....+..+.|+..+|+.--++..+ +.|... .|..-..++...++
T Consensus 259 ~fk~G~y~~A~E~Yteal~idP~n~~~naklY~nra~v~~rLgrl~eaisdc~~Al~--iD~syikall~ra~c~l~le~ 336 (486)
T KOG0550|consen 259 AFKNGNYRKAYECYTEALNIDPSNKKTNAKLYGNRALVNIRLGRLREAISDCNEALK--IDSSYIKALLRRANCHLALEK 336 (486)
T ss_pred HhhccchhHHHHHHHHhhcCCccccchhHHHHHHhHhhhcccCCchhhhhhhhhhhh--cCHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777766652 3445555555666667777777776666654 333322 23333344555666
Q ss_pred HHHHHHHHHHhHHh
Q 047767 534 VKEGQLVFNSMKSV 547 (666)
Q Consensus 534 ~~~a~~~~~~~~~~ 547 (666)
|++|.+-++...+.
T Consensus 337 ~e~AV~d~~~a~q~ 350 (486)
T KOG0550|consen 337 WEEAVEDYEKAMQL 350 (486)
T ss_pred HHHHHHHHHHHHhh
Confidence 77777777766654
No 224
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=96.69 E-value=0.014 Score=45.38 Aligned_cols=88 Identities=22% Similarity=0.185 Sum_probs=50.2
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC----cchHHHHHHHHhhcCCc
Q 047767 563 MLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD----FAVYSQVSNFYSEIGEF 636 (666)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~----~~~~~~l~~~~~~~g~~ 636 (666)
++...|+.+.|++.|.+.. .-| ....|+.-.+++.-.|+.++|++-+++++++.-+. ...|..-+.+|...|+-
T Consensus 52 alaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleLag~~trtacqa~vQRg~lyRl~g~d 131 (175)
T KOG4555|consen 52 ALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALELAGDQTRTACQAFVQRGLLYRLLGND 131 (175)
T ss_pred HHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHHHhCch
Confidence 3455666666666665433 222 45566666666666666666666666666644221 22355556666666666
Q ss_pred hHHHHHHHHHHhCC
Q 047767 637 EVSMQIRETALARK 650 (666)
Q Consensus 637 ~~A~~~~~~~~~~~ 650 (666)
+.|..-|+...+.|
T Consensus 132 d~AR~DFe~AA~LG 145 (175)
T KOG4555|consen 132 DAARADFEAAAQLG 145 (175)
T ss_pred HHHHHhHHHHHHhC
Confidence 66666666555443
No 225
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.66 E-value=0.093 Score=52.70 Aligned_cols=208 Identities=11% Similarity=0.105 Sum_probs=121.3
Q ss_pred HHHHHHHHHhcCC--hhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHH
Q 047767 383 CNSLMTSLLHSGN--IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMD 460 (666)
Q Consensus 383 ~~~li~~~~~~~~--~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 460 (666)
++..-.+|.+..+ +-+.+.-+++|++.|-.|+....... |+-.|.+.+|.++|.. .|.+ |.-++
T Consensus 601 f~~ARkAY~rVRdl~~L~li~EL~~~k~rge~P~~iLlA~~-----~Ay~gKF~EAAklFk~---~G~e------nRAlE 666 (1081)
T KOG1538|consen 601 FETARKAYIRVRDLRYLELISELEERKKRGETPNDLLLADV-----FAYQGKFHEAAKLFKR---SGHE------NRALE 666 (1081)
T ss_pred hHHHHHHHHHHhccHHHHHHHHHHHHHhcCCCchHHHHHHH-----HHhhhhHHHHHHHHHH---cCch------hhHHH
Confidence 4445556666554 33455667888888888987655443 6667777777776632 3322 22344
Q ss_pred HHHhhCCHHHHHHHhccCCC--------------CCHHHHHHHHHHHHHcCChhHHHHHHH------HHHHcCCCC---C
Q 047767 461 AYSRCGHIELSHQVFEKIPS--------------PNVVCFTSIMNGYSRNGMGREALDMLE------VMIQRGLIP---D 517 (666)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~--------------~~~~~~~~li~~~~~~~~~~~a~~~~~------~m~~~g~~p---~ 517 (666)
+|.....++.|.+++..... .++.--.+-...+...|+.++|..+.- -+.+-+-+. +
T Consensus 667 myTDlRMFD~aQE~~~~g~~~eKKmL~RKRA~WAr~~kePkaAAEmLiSaGe~~KAi~i~~d~gW~d~lidI~rkld~~e 746 (1081)
T KOG1538|consen 667 MYTDLRMFDYAQEFLGSGDPKEKKMLIRKRADWARNIKEPKAAAEMLISAGEHVKAIEICGDHGWVDMLIDIARKLDKAE 746 (1081)
T ss_pred HHHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHhhhcCCcHHHHHHhhcccchhhhhhhhhcccHHHHHHHHHhhcchhh
Confidence 55555555566555554331 111111123344556677777766531 122222222 2
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHH---------
Q 047767 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCM--------- 587 (666)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~--------- 587 (666)
..+...+...+.+...+.-|-++|.+|-. ..++++.....++|.+|..+-++.+ ..||+.
T Consensus 747 re~l~~~a~ylk~l~~~gLAaeIF~k~gD----------~ksiVqlHve~~~W~eAFalAe~hPe~~~dVy~pyaqwLAE 816 (1081)
T KOG1538|consen 747 REPLLLCATYLKKLDSPGLAAEIFLKMGD----------LKSLVQLHVETQRWDEAFALAEKHPEFKDDVYMPYAQWLAE 816 (1081)
T ss_pred hhHHHHHHHHHhhccccchHHHHHHHhcc----------HHHHhhheeecccchHhHhhhhhCccccccccchHHHHhhh
Confidence 23555555566677778888888888753 2467888899999999999988877 333321
Q ss_pred --HHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 588 --MWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 588 --~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
-+...-.+|.+.|+..+|..+++++-.
T Consensus 817 ~DrFeEAqkAfhkAGr~~EA~~vLeQLtn 845 (1081)
T KOG1538|consen 817 NDRFEEAQKAFHKAGRQREAVQVLEQLTN 845 (1081)
T ss_pred hhhHHHHHHHHHHhcchHHHHHHHHHhhh
Confidence 222233456677777777777776543
No 226
>KOG1130 consensus Predicted G-alpha GTPase interaction protein, contains GoLoco domain [Signal transduction mechanisms]
Probab=96.65 E-value=0.0073 Score=56.82 Aligned_cols=129 Identities=12% Similarity=0.024 Sum_probs=83.8
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHH----HHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCC-----CCc
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVM----IQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID-----ADR 554 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m----~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----p~~ 554 (666)
.|..|.+.|.-.|+++.|+...+.= ++-|-+.. ...+..+.+++.-.|+++.|.+.|+..... .++ ...
T Consensus 197 a~GnLGNTyYlLGdf~~ai~~H~~RL~ia~efGDrAaeRRA~sNlgN~hiflg~fe~A~ehYK~tl~L-Aielg~r~vEA 275 (639)
T KOG1130|consen 197 AYGNLGNTYYLLGDFDQAIHFHKLRLEIAQEFGDRAAERRAHSNLGNCHIFLGNFELAIEHYKLTLNL-AIELGNRTVEA 275 (639)
T ss_pred hhcccCceeeeeccHHHHHHHHHHHHHHHHHhhhHHHHHHhhcccchhhhhhcccHhHHHHHHHHHHH-HHHhcchhHHH
Confidence 4555555566667888777654432 22232222 235677778888888888888888765432 221 224
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP--------GGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
.+..+|.+.|.-..++++|+.++.+-. .-+....+.+|..++-..|..++|+.+.++.++
T Consensus 276 QscYSLgNtytll~e~~kAI~Yh~rHLaIAqeL~DriGe~RacwSLgna~~alg~h~kAl~fae~hl~ 343 (639)
T KOG1130|consen 276 QSCYSLGNTYTLLKEVQKAITYHQRHLAIAQELEDRIGELRACWSLGNAFNALGEHRKALYFAELHLR 343 (639)
T ss_pred HHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhhhhHHHHHHHHHHHHH
Confidence 445577888888888889988876422 223556677888888888888888887777665
No 227
>PF13424 TPR_12: Tetratricopeptide repeat; PDB: 3RO2_A 3Q15_A 3ASG_A 3ASD_A 3AS5_A 3AS4_A 3ASH_B 4A1S_B 3CEQ_B 3EDT_H ....
Probab=96.49 E-value=0.0034 Score=45.89 Aligned_cols=61 Identities=13% Similarity=0.122 Sum_probs=41.2
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-----CC---CC-HHHHHHHHHHHHhhCChHHHHHHHHHHHhc
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP-----GG---GD-CMMWSSLLRSCRVHGNEIIGRRVANILMEL 615 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 615 (666)
.+++.+..+|...|++++|++.+++.. .. |+ ..++..+...+...|++++|++.+++++++
T Consensus 6 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~al~i 75 (78)
T PF13424_consen 6 NAYNNLARVYRELGRYDEALDYYEKALDIEEQLGDDHPDTANTLNNLGECYYRLGDYEEALEYYQKALDI 75 (78)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 456677777777777777777766543 11 12 456677777788888888888888887664
No 228
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.42 E-value=0.55 Score=41.53 Aligned_cols=88 Identities=10% Similarity=0.072 Sum_probs=51.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCCH-HHHHHHHHHHHhhCChHHHHHHHHHHHh----cCCCCcch
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP-------GGGDC-MMWSSLLRSCRVHGNEIIGRRVANILME----LEPVDFAV 622 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~----~~p~~~~~ 622 (666)
..+....+.|.+..++++|-..+.+-. .-|+. ..+...+-.+....|+..|.+.++.-.+ ..|.+..+
T Consensus 151 el~gk~sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~~qip~f~~sed~r~ 230 (308)
T KOG1585|consen 151 ELYGKCSRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDCSQIPAFLKSEDSRS 230 (308)
T ss_pred HHHHHhhhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcchhcCccccChHHHHH
Confidence 334455566667777766665554321 22222 2344444455556677777777777554 44666677
Q ss_pred HHHHHHHHhhcCCchHHHHHH
Q 047767 623 YSQVSNFYSEIGEFEVSMQIR 643 (666)
Q Consensus 623 ~~~l~~~~~~~g~~~~A~~~~ 643 (666)
..+|..+| ..|+.+++..+.
T Consensus 231 lenLL~ay-d~gD~E~~~kvl 250 (308)
T KOG1585|consen 231 LENLLTAY-DEGDIEEIKKVL 250 (308)
T ss_pred HHHHHHHh-ccCCHHHHHHHH
Confidence 77777766 556666666554
No 229
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.41 E-value=0.019 Score=51.64 Aligned_cols=102 Identities=16% Similarity=0.054 Sum_probs=64.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhCC----CCC-CHHHHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTP----GGG-DCMMWSSLL 593 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~-~~~~~~~l~ 593 (666)
.|+.-+.. .+.|++..|...|....+.|.-.+ ....+-.|.+++...|++++|..+|..+. ..| -+..+.-|.
T Consensus 144 ~Y~~A~~~-~ksgdy~~A~~~F~~fi~~YP~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg 222 (262)
T COG1729 144 LYNAALDL-YKSGDYAEAEQAFQAFIKKYPNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLG 222 (262)
T ss_pred HHHHHHHH-HHcCCHHHHHHHHHHHHHcCCCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHH
Confidence 45555543 345667778777777776521111 14555667777777777777777765443 333 345666666
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCcch
Q 047767 594 RSCRVHGNEIIGRRVANILMELEPVDFAV 622 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 622 (666)
......|+.++|...|+++.+..|..+.+
T Consensus 223 ~~~~~l~~~d~A~atl~qv~k~YP~t~aA 251 (262)
T COG1729 223 VSLGRLGNTDEACATLQQVIKRYPGTDAA 251 (262)
T ss_pred HHHHHhcCHHHHHHHHHHHHHHCCCCHHH
Confidence 66777777777777777777777765433
No 230
>KOG0543 consensus FKBP-type peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=96.27 E-value=0.017 Score=54.82 Aligned_cols=66 Identities=14% Similarity=0.103 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
..+++.+...+.+.+++..|++.-+++++.+|+|.-+++.-|.+|...|+++.|+..|+++.+.-.
T Consensus 257 ~~~~lNlA~c~lKl~~~~~Ai~~c~kvLe~~~~N~KALyRrG~A~l~~~e~~~A~~df~ka~k~~P 322 (397)
T KOG0543|consen 257 LACHLNLAACYLKLKEYKEAIESCNKVLELDPNNVKALYRRGQALLALGEYDLARDDFQKALKLEP 322 (397)
T ss_pred HHHhhHHHHHHHhhhhHHHHHHHHHHHHhcCCCchhHHHHHHHHHHhhccHHHHHHHHHHHHHhCC
Confidence 456778888899999999999999999999999999999999999999999999999999986443
No 231
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=96.26 E-value=0.31 Score=44.56 Aligned_cols=117 Identities=10% Similarity=0.039 Sum_probs=63.0
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH---HHHHHHhhCCh
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSS---LLRSCRVHGNE 602 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~---l~~~~~~~~~~ 602 (666)
.....|+..+|...|+..... .|. ....-.|+++|...|+.+.|..++..++..-...-+.. -+..+.+..+.
T Consensus 143 ~~~~~e~~~~a~~~~~~al~~---~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~~~~~~~~~l~a~i~ll~qaa~~ 219 (304)
T COG3118 143 ELIEAEDFGEAAPLLKQALQA---APENSEAKLLLAECLLAAGDVEAAQAILAALPLQAQDKAAHGLQAQIELLEQAAAT 219 (304)
T ss_pred hhhhccchhhHHHHHHHHHHh---CcccchHHHHHHHHHHHcCChHHHHHHHHhCcccchhhHHHHHHHHHHHHHHHhcC
Confidence 344556666666666666643 222 45555666666677777777777666663332222222 11222222222
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 603 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
.+ ...+++-...+|+|...-..|+..+...|+.++|.+.+=.+.
T Consensus 220 ~~-~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l 263 (304)
T COG3118 220 PE-IQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALL 263 (304)
T ss_pred CC-HHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 223444455666666666677777777777777666654443
No 232
>PF13525 YfiO: Outer membrane lipoprotein; PDB: 3TGO_A 3Q5M_A 2YHC_A.
Probab=96.23 E-value=0.12 Score=46.18 Aligned_cols=127 Identities=11% Similarity=0.013 Sum_probs=86.8
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC----CCCCHH-HHHHHHHHH
Q 047767 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP----GGGDCM-MWSSLLRSC 596 (666)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~-~~~~l~~~~ 596 (666)
.....+...|++++|.+.|+.+...+...|- ....-.++.++.+.|++++|...+++.. ..|... .+-.++.++
T Consensus 10 ~~a~~~~~~g~y~~Ai~~f~~l~~~~P~s~~a~~A~l~la~a~y~~~~y~~A~~~~~~fi~~yP~~~~~~~A~Y~~g~~~ 89 (203)
T PF13525_consen 10 QKALEALQQGDYEEAIKLFEKLIDRYPNSPYAPQAQLMLAYAYYKQGDYEEAIAAYERFIKLYPNSPKADYALYMLGLSY 89 (203)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHTT-HHHHHHHHHHHHHH-TT-TTHHHHHHHHHHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHH
Confidence 3444566789999999999999987444443 5666778899999999999999988754 333221 222222222
Q ss_pred H-----------hhCChHHHHHHHHHHHhcCCCCcchH-----------------HHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 597 R-----------VHGNEIIGRRVANILMELEPVDFAVY-----------------SQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 597 ~-----------~~~~~~~a~~~~~~~~~~~p~~~~~~-----------------~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
. ..+...+|...++..++..|+++.+- ..++..|.+.|++.-|+.-++.+.+
T Consensus 90 ~~~~~~~~~~~~D~~~~~~A~~~~~~li~~yP~S~y~~~A~~~l~~l~~~la~~e~~ia~~Y~~~~~y~aA~~r~~~v~~ 169 (203)
T PF13525_consen 90 YKQIPGILRSDRDQTSTRKAIEEFEELIKRYPNSEYAEEAKKRLAELRNRLAEHELYIARFYYKRGKYKAAIIRFQYVIE 169 (203)
T ss_dssp HHHHHHHH-TT---HHHHHHHHHHHHHHHH-TTSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHCTT-HHHHHHHHHHHHH
T ss_pred HHhCccchhcccChHHHHHHHHHHHHHHHHCcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHH
Confidence 1 12345688999999999999976552 4578899999999999999988765
Q ss_pred C
Q 047767 649 R 649 (666)
Q Consensus 649 ~ 649 (666)
.
T Consensus 170 ~ 170 (203)
T PF13525_consen 170 N 170 (203)
T ss_dssp H
T ss_pred H
Confidence 3
No 233
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=96.14 E-value=0.062 Score=43.07 Aligned_cols=50 Identities=10% Similarity=0.259 Sum_probs=36.7
Q ss_pred CCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHH
Q 047767 514 LIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563 (666)
Q Consensus 514 ~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 563 (666)
..|+..+..+++.+|+..|++..|.++++...+.|+++.+..+|..|++-
T Consensus 48 l~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y~I~i~~~~W~~Ll~W 97 (126)
T PF12921_consen 48 LYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKYPIPIPKEFWRRLLEW 97 (126)
T ss_pred CCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 55777777777777777777777777777777777777667777766653
No 234
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=96.09 E-value=0.73 Score=46.68 Aligned_cols=90 Identities=18% Similarity=0.122 Sum_probs=50.3
Q ss_pred ccHHHHHHHHHhcCCchHHHHH---------HHHHHHcCCCCCHhhHHHHHHHhcccCChHHHH--HHHHHHHHhCCCCc
Q 047767 177 ATWNLMLRAFCELSRPDEVLRM---------YNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGK--QLHSHVIKLGWVDV 245 (666)
Q Consensus 177 ~~~~~li~~~~~~~~~~~a~~~---------~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~--~~~~~~~~~~~~~~ 245 (666)
..+.+-+..|...|.+++|.++ |+.+... ..+...+++.-++|.+..+..--+ .-++++.+.| -.|
T Consensus 557 vp~~~~m~q~Ieag~f~ea~~iaclgVv~~DW~~LA~~--ALeAL~f~~ARkAY~rVRdl~~L~li~EL~~~k~rg-e~P 633 (1081)
T KOG1538|consen 557 VPQSAPMYQYIERGLFKEAYQIACLGVTDTDWRELAME--ALEALDFETARKAYIRVRDLRYLELISELEERKKRG-ETP 633 (1081)
T ss_pred ccccccchhhhhccchhhhhcccccceecchHHHHHHH--HHhhhhhHHHHHHHHHHhccHHHHHHHHHHHHHhcC-CCc
Confidence 3455556667778888777654 2222211 123344555556666655544333 3345566666 445
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHhcc
Q 047767 246 NIFVANALVDFYSACGSLIEAKKSFDF 272 (666)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~A~~~~~~ 272 (666)
+... +...++-.|++.+|-++|.+
T Consensus 634 ~~iL---lA~~~Ay~gKF~EAAklFk~ 657 (1081)
T KOG1538|consen 634 NDLL---LADVFAYQGKFHEAAKLFKR 657 (1081)
T ss_pred hHHH---HHHHHHhhhhHHHHHHHHHH
Confidence 5543 44556677888888777643
No 235
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=96.09 E-value=0.51 Score=40.86 Aligned_cols=176 Identities=15% Similarity=0.133 Sum_probs=106.0
Q ss_pred hCCHHHHHHHhccCC--CCC-HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH--HhcCCCcHHHHHH
Q 047767 465 CGHIELSHQVFEKIP--SPN-VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA--GCNHSGMVKEGQL 539 (666)
Q Consensus 465 ~g~~~~A~~~~~~~~--~~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~--~~~~~g~~~~a~~ 539 (666)
.|-+..|.--|.+.. .|+ +..||-|.--+...|+++.|.+.|+...+ +.|... |..+-+ ++.-.|++.-|.+
T Consensus 78 lGL~~LAR~DftQaLai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~E--LDp~y~-Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLE--LDPTYN-YAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhhhcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhc--cCCcch-HHHhccceeeeecCchHhhHH
Confidence 344444444444433 243 56788888888999999999999999988 455432 322322 4556789998887
Q ss_pred HHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHH-HhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 540 VFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL-QQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 540 ~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
-+-..-+...-.|=...|-.+. .+.-++.+|..-+ ++.. ..|..-|..-+..+.- |... -+.+++++.+...+
T Consensus 155 d~~~fYQ~D~~DPfR~LWLYl~---E~k~dP~~A~tnL~qR~~-~~d~e~WG~~iV~~yL-gkiS-~e~l~~~~~a~a~~ 228 (297)
T COG4785 155 DLLAFYQDDPNDPFRSLWLYLN---EQKLDPKQAKTNLKQRAE-KSDKEQWGWNIVEFYL-GKIS-EETLMERLKADATD 228 (297)
T ss_pred HHHHHHhcCCCChHHHHHHHHH---HhhCCHHHHHHHHHHHHH-hccHhhhhHHHHHHHH-hhcc-HHHHHHHHHhhccc
Confidence 7766654411122122332222 2344677777554 4444 4455556555544332 2221 13444455443333
Q ss_pred C-------cchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 619 D-------FAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 619 ~-------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
+ ..+|.-|+..|...|+.++|..+|+.....
T Consensus 229 n~~~Ae~LTEtyFYL~K~~l~~G~~~~A~~LfKLaian 266 (297)
T COG4785 229 NTSLAEHLTETYFYLGKYYLSLGDLDEATALFKLAVAN 266 (297)
T ss_pred hHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHH
Confidence 3 457888999999999999999999977654
No 236
>PLN03098 LPA1 LOW PSII ACCUMULATION1; Provisional
Probab=96.04 E-value=0.04 Score=53.72 Aligned_cols=59 Identities=14% Similarity=0.057 Sum_probs=31.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCc----hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR----QHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
.++.+..+|.+.|++++|+..|++..+ +.|+. ..|..+..+|...|+.++|++.+++..
T Consensus 77 a~~NLG~AL~~lGryeEAIa~f~rALe---L~Pd~aeA~~A~yNLAcaya~LGr~dEAla~LrrAL 139 (453)
T PLN03098 77 DAVNLGLSLFSKGRVKDALAQFETALE---LNPNPDEAQAAYYNKACCHAYREEGKKAADCLRTAL 139 (453)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHh---hCCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 455555555555555555555555553 24442 235555555555555555555555443
No 237
>COG1729 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.97 E-value=0.06 Score=48.58 Aligned_cols=84 Identities=20% Similarity=0.216 Sum_probs=40.5
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH----HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCCh
Q 047767 496 NGMGREALDMLEVMIQRGLIPDK----VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGIL 570 (666)
Q Consensus 496 ~~~~~~a~~~~~~m~~~g~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 570 (666)
.|++.+|..-|...++.. |+. ..+-.|..++...|++++|..+|..+.+.++-.|. ++.+-.|..+..+.|+.
T Consensus 154 sgdy~~A~~~F~~fi~~Y--P~s~~~~nA~yWLGe~~y~qg~y~~Aa~~f~~~~k~~P~s~KApdallKlg~~~~~l~~~ 231 (262)
T COG1729 154 SGDYAEAEQAFQAFIKKY--PNSTYTPNAYYWLGESLYAQGDYEDAAYIFARVVKDYPKSPKAPDALLKLGVSLGRLGNT 231 (262)
T ss_pred cCCHHHHHHHHHHHHHcC--CCCcccchhHHHHHHHHHhcccchHHHHHHHHHHHhCCCCCCChHHHHHHHHHHHHhcCH
Confidence 344555555555555432 111 12333455555555555555555555554443333 35555555555555555
Q ss_pred HHHHHHHHhCC
Q 047767 571 DKAEELLQQTP 581 (666)
Q Consensus 571 ~~A~~~~~~~~ 581 (666)
++|..+|+++.
T Consensus 232 d~A~atl~qv~ 242 (262)
T COG1729 232 DEACATLQQVI 242 (262)
T ss_pred HHHHHHHHHHH
Confidence 55555555443
No 238
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=95.83 E-value=0.025 Score=32.99 Aligned_cols=32 Identities=22% Similarity=0.230 Sum_probs=21.4
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
.|..+...+...|++++|++.++++++++|+|
T Consensus 3 ~~~~lg~~~~~~~~~~~A~~~~~~al~l~p~~ 34 (34)
T PF07719_consen 3 AWYYLGQAYYQLGNYEEAIEYFEKALELDPNN 34 (34)
T ss_dssp HHHHHHHHHHHTT-HHHHHHHHHHHHHHSTTS
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHHHHCcCC
Confidence 45566666777777777777777777777754
No 239
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=95.81 E-value=0.019 Score=33.61 Aligned_cols=32 Identities=16% Similarity=0.058 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
.+|..++..+...|++++|+..++++++++|+
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~ 33 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELDPD 33 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHCcC
Confidence 35667777777778888888888888887775
No 240
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=95.80 E-value=0.042 Score=49.23 Aligned_cols=112 Identities=14% Similarity=0.156 Sum_probs=86.0
Q ss_pred hHHHHhhcCC--CCCchhHHHHHHHhhc-----CCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCC----------
Q 047767 62 SAKKLFDEMP--ARDMVTYNLLISGCGK-----FRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG---------- 124 (666)
Q Consensus 62 ~A~~~~~~~~--~~~~~~~~~ll~~~~~-----~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~---------- 124 (666)
..+..|...+ ++|-.+|-..+..+.. .+.++-....++.|.+.|+.-|..+|+.||+.+-+..
T Consensus 52 ~~e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~ 131 (406)
T KOG3941|consen 52 HVEKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKV 131 (406)
T ss_pred chhhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHH
Confidence 4556677776 5777788888887754 4667777888999999999999999999999875432
Q ss_pred ------ChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCC-hhHHHHhhccCCC
Q 047767 125 ------FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP-SVRALDLFDELPE 173 (666)
Q Consensus 125 ------~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~~~~~~~~~ 173 (666)
.-+-+.+++++|..+|+.||..+-..|+.++.+.+- ..+..++.-.|++
T Consensus 132 F~HYP~QQ~C~I~vLeqME~hGVmPdkE~e~~lvn~FGr~~~p~~K~~Rm~yWmPk 187 (406)
T KOG3941|consen 132 FLHYPQQQNCAIKVLEQMEWHGVMPDKEIEDILVNAFGRWNFPTKKVKRMLYWMPK 187 (406)
T ss_pred HhhCchhhhHHHHHHHHHHHcCCCCchHHHHHHHHHhccccccHHHHHHHHHhhhh
Confidence 234578899999999999999999999999988765 3344555545543
No 241
>COG3118 Thioredoxin domain-containing protein [Posttranslational modification, protein turnover, chaperones]
Probab=95.77 E-value=0.73 Score=42.25 Aligned_cols=153 Identities=14% Similarity=0.120 Sum_probs=110.7
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCC
Q 047767 491 NGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569 (666)
Q Consensus 491 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 569 (666)
......|++.+|..+|+..... .|.. ..-..+..++...|+.+.|..++..+-.. .-.........-+..+.+...
T Consensus 142 ~~~~~~e~~~~a~~~~~~al~~--~~~~~~~~~~la~~~l~~g~~e~A~~iL~~lP~~-~~~~~~~~l~a~i~ll~qaa~ 218 (304)
T COG3118 142 KELIEAEDFGEAAPLLKQALQA--APENSEAKLLLAECLLAAGDVEAAQAILAALPLQ-AQDKAAHGLQAQIELLEQAAA 218 (304)
T ss_pred hhhhhccchhhHHHHHHHHHHh--CcccchHHHHHHHHHHHcCChHHHHHHHHhCccc-chhhHHHHHHHHHHHHHHHhc
Confidence 3456788999999999998873 3433 45667788899999999999999887644 111112223345667777777
Q ss_pred hHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC--CCCcchHHHHHHHHhhcCCchHHHHH-HHH
Q 047767 570 LDKAEELLQQTPGGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELE--PVDFAVYSQVSNFYSEIGEFEVSMQI-RET 645 (666)
Q Consensus 570 ~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~ 645 (666)
..+...+-++.-..| |...-..+...+...|+.+.|.+.+=.++..+ -+|..+--.|+.++..-|..+.+... .++
T Consensus 219 ~~~~~~l~~~~aadPdd~~aa~~lA~~~~~~g~~e~Ale~Ll~~l~~d~~~~d~~~Rk~lle~f~~~g~~Dp~~~~~RRk 298 (304)
T COG3118 219 TPEIQDLQRRLAADPDDVEAALALADQLHLVGRNEAALEHLLALLRRDRGFEDGEARKTLLELFEAFGPADPLVLAYRRK 298 (304)
T ss_pred CCCHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccCcHHHHHHHHHHHhcCCCCHHHHHHHHH
Confidence 777777777777677 67777788888999999999998888887754 55677888899988888865554443 334
Q ss_pred H
Q 047767 646 A 646 (666)
Q Consensus 646 ~ 646 (666)
|
T Consensus 299 L 299 (304)
T COG3118 299 L 299 (304)
T ss_pred H
Confidence 4
No 242
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=95.76 E-value=1.1 Score=40.42 Aligned_cols=56 Identities=14% Similarity=0.104 Sum_probs=42.8
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCcchH---HHHHHHHhhcCCchHHHHHHHHHH
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVY---SQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
+..-|.+.|.+..|..-++++++..|+.+.+. .-+..+|...|-.++|.+.-+-+.
T Consensus 173 IaryY~kr~~~~AA~nR~~~v~e~y~~t~~~~eaL~~l~eaY~~lgl~~~a~~~~~vl~ 231 (254)
T COG4105 173 IARYYLKRGAYVAAINRFEEVLENYPDTSAVREALARLEEAYYALGLTDEAKKTAKVLG 231 (254)
T ss_pred HHHHHHHhcChHHHHHHHHHHHhccccccchHHHHHHHHHHHHHhCChHHHHHHHHHHH
Confidence 44567888899999999999998877765554 456688888999888888765554
No 243
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=95.71 E-value=0.68 Score=47.36 Aligned_cols=160 Identities=9% Similarity=0.001 Sum_probs=107.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCCH-----HHHHHHHHHhcC----CCcHHHHHHHHHHhHHhhCCCCCch
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRG-LIPDK-----VTFLCVLAGCNH----SGMVKEGQLVFNSMKSVYGIDADRQ 555 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~-----~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~ 555 (666)
+..++....-.||-+.+++.+.+..+.+ +.-.. ..|..++..+.. ....+.|.++++.+.+. -|+..
T Consensus 191 ~~kll~~vGF~gdR~~GL~~L~~~~~~~~i~~~la~L~LL~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~~---yP~s~ 267 (468)
T PF10300_consen 191 VLKLLSFVGFSGDRELGLRLLWEASKSENIRSPLAALVLLWYHLVVPSFLGIDGEDVPLEEAEELLEEMLKR---YPNSA 267 (468)
T ss_pred HHHHHhhcCcCCcHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHcCCcccCCCHHHHHHHHHHHHHh---CCCcH
Confidence 3345555556678888888777765522 22111 124444443332 45788899999999875 57755
Q ss_pred HHHH-HHHHHHhcCChHHHHHHHHhCCC-CC-----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchH-HHHH
Q 047767 556 HYSC-MIDMLGRAGILDKAEELLQQTPG-GG-----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY-SQVS 627 (666)
Q Consensus 556 ~~~~-l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~-~~l~ 627 (666)
.|.. -.+.+...|++++|++.|++... +. ....+--++..+....++++|.+.+.++.+.+.-+...| +..+
T Consensus 268 lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a 347 (468)
T PF10300_consen 268 LFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCYFELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAA 347 (468)
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHHHHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHH
Confidence 5543 34667788999999999997552 11 334455566777888999999999999998765444444 4566
Q ss_pred HHHhhcCCc-------hHHHHHHHHHHh
Q 047767 628 NFYSEIGEF-------EVSMQIRETALA 648 (666)
Q Consensus 628 ~~~~~~g~~-------~~A~~~~~~~~~ 648 (666)
-++...|+. ++|.++|++...
T Consensus 348 ~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 348 ACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 777788988 888888887654
No 244
>PF03704 BTAD: Bacterial transcriptional activator domain; InterPro: IPR005158 Found in the DNRI/REDD/AFSR family of regulators, this region of AFSR (P25941 from SWISSPROT) along with the C-terminal region is capable of independently directing actinorhodin production. It is important for the formation of secondary metabolites.; PDB: 2FF4_B 2FEZ_A.
Probab=95.68 E-value=0.099 Score=43.81 Aligned_cols=70 Identities=19% Similarity=0.299 Sum_probs=42.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHH----hhCCCCCchHH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKS----VYGIDADRQHY 557 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~ 557 (666)
...++..+...|++++|..+++.+.. ..| |...|..+|.++...|+...|.+.|+.+.. ..|+.|+..+-
T Consensus 65 ~~~l~~~~~~~~~~~~a~~~~~~~l~--~dP~~E~~~~~lm~~~~~~g~~~~A~~~Y~~~~~~l~~elg~~Ps~~~~ 139 (146)
T PF03704_consen 65 LERLAEALLEAGDYEEALRLLQRALA--LDPYDEEAYRLLMRALAAQGRRAEALRVYERYRRRLREELGIEPSPETR 139 (146)
T ss_dssp HHHHHHHHHHTT-HHHHHHHHHHHHH--HSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHHHS----HHHH
T ss_pred HHHHHHHHHhccCHHHHHHHHHHHHh--cCCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHHhCcCcCHHHH
Confidence 44456666677777777777777777 344 455777777777777777777777776643 24777775543
No 245
>PRK11906 transcriptional regulator; Provisional
Probab=95.62 E-value=0.54 Score=46.30 Aligned_cols=145 Identities=12% Similarity=0.060 Sum_probs=98.3
Q ss_pred CHHHHHHHhccCC---CCC---HHHHHHHHHHHHHc---------CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 047767 467 HIELSHQVFEKIP---SPN---VVCFTSIMNGYSRN---------GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531 (666)
Q Consensus 467 ~~~~A~~~~~~~~---~~~---~~~~~~li~~~~~~---------~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 531 (666)
..+.|..+|.+.. +-| ...|..+..++... .+..+|.++.++..+.+ +-|......+..+....
T Consensus 273 ~~~~Al~lf~ra~~~~~ldp~~a~a~~~lA~~h~~~~~~g~~~~~~~~~~a~~~A~rAveld-~~Da~a~~~~g~~~~~~ 351 (458)
T PRK11906 273 SIYRAMTIFDRLQNKSDIQTLKTECYCLLAECHMSLALHGKSELELAAQKALELLDYVSDIT-TVDGKILAIMGLITGLS 351 (458)
T ss_pred HHHHHHHHHHHHhhcccCCcccHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHhh
Confidence 4568888898877 433 45565555554332 23456777777777743 33556777777777778
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHh-CCCCCC---HHHHHHHHHHHHhhCChHHHH
Q 047767 532 GMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQ-TPGGGD---CMMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 532 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~---~~~~~~l~~~~~~~~~~~~a~ 606 (666)
++.+.|...|++.. .+.|+ ...|........-.|+.++|.+.+++ +...|. .......+..|.. ...+.|+
T Consensus 352 ~~~~~a~~~f~rA~---~L~Pn~A~~~~~~~~~~~~~G~~~~a~~~i~~alrLsP~~~~~~~~~~~~~~~~~-~~~~~~~ 427 (458)
T PRK11906 352 GQAKVSHILFEQAK---IHSTDIASLYYYRALVHFHNEKIEEARICIDKSLQLEPRRRKAVVIKECVDMYVP-NPLKNNI 427 (458)
T ss_pred cchhhHHHHHHHHh---hcCCccHHHHHHHHHHHHHcCCHHHHHHHHHHHhccCchhhHHHHHHHHHHHHcC-CchhhhH
Confidence 88999999999998 45888 66676777777889999999999998 567773 2233333334544 4677788
Q ss_pred HHHHHHHhcC
Q 047767 607 RVANILMELE 616 (666)
Q Consensus 607 ~~~~~~~~~~ 616 (666)
++|-+-.+..
T Consensus 428 ~~~~~~~~~~ 437 (458)
T PRK11906 428 KLYYKETESE 437 (458)
T ss_pred HHHhhccccc
Confidence 8877644433
No 246
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=95.56 E-value=1.4 Score=43.69 Aligned_cols=17 Identities=12% Similarity=0.002 Sum_probs=12.9
Q ss_pred HHHHHHHHHHhcCCCCc
Q 047767 604 IGRRVANILMELEPVDF 620 (666)
Q Consensus 604 ~a~~~~~~~~~~~p~~~ 620 (666)
.|++++.++++.+|.-|
T Consensus 364 ~aveAi~RAvefNPHVp 380 (539)
T PF04184_consen 364 NAVEAIHRAVEFNPHVP 380 (539)
T ss_pred HHHHHHHHHHHhCCCCc
Confidence 36788889988888643
No 247
>PRK15331 chaperone protein SicA; Provisional
Probab=95.49 E-value=0.28 Score=40.86 Aligned_cols=93 Identities=9% Similarity=-0.053 Sum_probs=64.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhc
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 567 (666)
...-+-..|++++|..+|+-+.- ..|... -+..|..+|...++++.|+..|...... + .-|+..+-....+|...
T Consensus 43 ~Ay~~y~~Gk~~eA~~~F~~L~~--~d~~n~~Y~~GLaa~~Q~~k~y~~Ai~~Y~~A~~l-~-~~dp~p~f~agqC~l~l 118 (165)
T PRK15331 43 HAYEFYNQGRLDEAETFFRFLCI--YDFYNPDYTMGLAAVCQLKKQFQKACDLYAVAFTL-L-KNDYRPVFFTGQCQLLM 118 (165)
T ss_pred HHHHHHHCCCHHHHHHHHHHHHH--hCcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-c-cCCCCccchHHHHHHHh
Confidence 34445677888888888888776 334333 3455666666778888888888877654 2 23455566678888888
Q ss_pred CChHHHHHHHHhCCCCCC
Q 047767 568 GILDKAEELLQQTPGGGD 585 (666)
Q Consensus 568 g~~~~A~~~~~~~~~~~~ 585 (666)
|+.++|+..|+....+|.
T Consensus 119 ~~~~~A~~~f~~a~~~~~ 136 (165)
T PRK15331 119 RKAAKARQCFELVNERTE 136 (165)
T ss_pred CCHHHHHHHHHHHHhCcc
Confidence 888888888887765554
No 248
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.44 E-value=4.3 Score=42.99 Aligned_cols=63 Identities=13% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHH----HHHHHHHcCCCCCHH
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALD----MLEVMIQRGLIPDKV 519 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~----~~~~m~~~g~~p~~~ 519 (666)
.++..+....+.+.+..+.+...+.++..|-.++..+++.+.++.-.+ +++.......-|...
T Consensus 710 dl~~~~~q~~d~E~~it~~~~~g~~~p~l~~~~L~yF~~~~~i~~~~~~v~~vl~~I~~~~~ippl~ 776 (933)
T KOG2114|consen 710 DLMLYFQQISDPETVITLCERLGKEDPSLWLHALKYFVSEESIEDCYEIVYKVLEAIEMQERIPPLH 776 (933)
T ss_pred HHHHHHHHhhChHHHHHHHHHhCccChHHHHHHHHHHhhhcchhhHHHHHHHHHHHHHhcccCCHHH
Confidence 356667777888888888888887788889999998888876555444 444444433334333
No 249
>KOG4555 consensus TPR repeat-containing protein [Function unknown]
Probab=95.40 E-value=0.055 Score=42.25 Aligned_cols=57 Identities=14% Similarity=0.040 Sum_probs=52.4
Q ss_pred HHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
..+....|+.+.|++.|.+++.+.|.++.+|++-+.++.-+|+.++|++-+.+..+.
T Consensus 50 ~valaE~g~Ld~AlE~F~qal~l~P~raSayNNRAQa~RLq~~~e~ALdDLn~AleL 106 (175)
T KOG4555|consen 50 AIALAEAGDLDGALELFGQALCLAPERASAYNNRAQALRLQGDDEEALDDLNKALEL 106 (175)
T ss_pred HHHHHhccchHHHHHHHHHHHHhcccchHhhccHHHHHHHcCChHHHHHHHHHHHHh
Confidence 345678899999999999999999999999999999999999999999999988764
No 250
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=95.28 E-value=0.23 Score=46.40 Aligned_cols=162 Identities=10% Similarity=0.042 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHH-cCCCCCH---HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chH
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQ-RGLIPDK---VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQH 556 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~-~g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~ 556 (666)
.|..+.+++.+.-++.+++.+-+.-.. .|..|.. ....++..++...+.++++.+.|+....--.-.-| ..+
T Consensus 85 a~lnlar~~e~l~~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqv 164 (518)
T KOG1941|consen 85 AYLNLARSNEKLCEFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQV 164 (518)
T ss_pred HHHHHHHHHHHHHHhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeeh
Confidence 444455555555555555555443332 2333311 12334555666667778888877776543111111 456
Q ss_pred HHHHHHHHHhcCChHHHHHHHHh-------CCCCC-----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC------CC
Q 047767 557 YSCMIDMLGRAGILDKAEELLQQ-------TPGGG-----DCMMWSSLLRSCRVHGNEIIGRRVANILMELE------PV 618 (666)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~-------~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~ 618 (666)
+..|...|.+..++++|.-+..+ ..... .....-.+..++...|....|.+.-+++.++. |-
T Consensus 165 cv~Lgslf~~l~D~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~klal~~Gdra~ 244 (518)
T KOG1941|consen 165 CVSLGSLFAQLKDYEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMKLALQHGDRAL 244 (518)
T ss_pred hhhHHHHHHHHHhhhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHHHHHHhCChHH
Confidence 77777888888887776654432 22111 11223334556777787777777777766622 22
Q ss_pred CcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 619 DFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
.+.....++++|...|+.+.|..-|+.+
T Consensus 245 ~arc~~~~aDIyR~~gd~e~af~rYe~A 272 (518)
T KOG1941|consen 245 QARCLLCFADIYRSRGDLERAFRRYEQA 272 (518)
T ss_pred HHHHHHHHHHHHHhcccHhHHHHHHHHH
Confidence 3344556788888888888877776654
No 251
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.20 E-value=0.17 Score=43.09 Aligned_cols=86 Identities=7% Similarity=0.001 Sum_probs=39.2
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCCCchHHH-----HHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhC
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS-----CMIDMLGRAGILDKAEELLQQTPGGG-DCMMWSSLLRSCRVHG 600 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~ 600 (666)
.+...+++++|..-++..... |....+. .|.+.....|.+++|.+.++....+. .......-+.++...|
T Consensus 98 ~~ve~~~~d~A~aqL~~~l~~----t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w~~~~~elrGDill~kg 173 (207)
T COG2976 98 AEVEANNLDKAEAQLKQALAQ----TKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESWAAIVAELRGDILLAKG 173 (207)
T ss_pred HHHhhccHHHHHHHHHHHHcc----chhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccHHHHHHHHhhhHHHHcC
Confidence 345555555555555544422 1112222 23344455555555555555544221 1222223334455555
Q ss_pred ChHHHHHHHHHHHhcC
Q 047767 601 NEIIGRRVANILMELE 616 (666)
Q Consensus 601 ~~~~a~~~~~~~~~~~ 616 (666)
+.++|...|+++++..
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 5555555555555544
No 252
>PF13512 TPR_18: Tetratricopeptide repeat
Probab=95.16 E-value=0.44 Score=38.72 Aligned_cols=112 Identities=17% Similarity=0.034 Sum_probs=53.0
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCC
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIP---DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 569 (666)
..+.|++++|.+.|+.+...- +. ....-..++.++.+.++++.|...+++.++.+.-.|+ .-|.....+++....
T Consensus 20 ~l~~~~Y~~A~~~le~L~~ry-P~g~ya~qAqL~l~yayy~~~~y~~A~a~~~rFirLhP~hp~-vdYa~Y~~gL~~~~~ 97 (142)
T PF13512_consen 20 ALQKGNYEEAIKQLEALDTRY-PFGEYAEQAQLDLAYAYYKQGDYEEAIAAYDRFIRLHPTHPN-VDYAYYMRGLSYYEQ 97 (142)
T ss_pred HHHhCCHHHHHHHHHHHHhcC-CCCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCCC-ccHHHHHHHHHHHHH
Confidence 344566666666666655531 11 1123444555566666666666666666544222222 122222222222111
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 570 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
.+ ..+..+. ..-.-.+....|...|+++++..|++..
T Consensus 98 ~~---~~~~~~~------------~~drD~~~~~~A~~~f~~lv~~yP~S~y 134 (142)
T PF13512_consen 98 DE---GSLQSFF------------RSDRDPTPARQAFRDFEQLVRRYPNSEY 134 (142)
T ss_pred hh---hHHhhhc------------ccccCcHHHHHHHHHHHHHHHHCcCChh
Confidence 11 1111111 0001112366889999999999998753
No 253
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=95.15 E-value=3.8 Score=45.19 Aligned_cols=117 Identities=12% Similarity=0.046 Sum_probs=66.4
Q ss_pred HHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcH
Q 047767 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534 (666)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 534 (666)
|...++.--+.|.+.+|..++..-.+.-...|.+....+...+.+++|.-.|+..-+ ..--+.+|...|+|
T Consensus 911 ~~e~~n~I~kh~Ly~~aL~ly~~~~e~~k~i~~~ya~hL~~~~~~~~Aal~Ye~~Gk---------lekAl~a~~~~~dW 981 (1265)
T KOG1920|consen 911 FPECKNYIKKHGLYDEALALYKPDSEKQKVIYEAYADHLREELMSDEAALMYERCGK---------LEKALKAYKECGDW 981 (1265)
T ss_pred cHHHHHHHHhcccchhhhheeccCHHHHHHHHHHHHHHHHHhccccHHHHHHHHhcc---------HHHHHHHHHHhccH
Confidence 333444445556666666655433333334444455555566677777666654322 22345566777777
Q ss_pred HHHHHHHHHhHHhhCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 047767 535 KEGQLVFNSMKSVYGIDAD--RQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 584 (666)
.+|..+..++.. .-| ..+-..|+.-+..++++-+|-++..+....|
T Consensus 982 r~~l~~a~ql~~----~~de~~~~a~~L~s~L~e~~kh~eAa~il~e~~sd~ 1029 (1265)
T KOG1920|consen 982 REALSLAAQLSE----GKDELVILAEELVSRLVEQRKHYEAAKILLEYLSDP 1029 (1265)
T ss_pred HHHHHHHHhhcC----CHHHHHHHHHHHHHHHHHcccchhHHHHHHHHhcCH
Confidence 777777766532 111 2222556677777788777777777766555
No 254
>PF13281 DUF4071: Domain of unknown function (DUF4071)
Probab=95.10 E-value=3.6 Score=40.04 Aligned_cols=163 Identities=13% Similarity=0.084 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCC--CCCH-HHHHHHHHHhcC---CCcHHHHHHHHHHhHHhhCCCCCchHHHH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGL--IPDK-VTFLCVLAGCNH---SGMVKEGQLVFNSMKSVYGIDADRQHYSC 559 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~--~p~~-~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~p~~~~~~~ 559 (666)
...++-+|....+++..+++.+.|...-. .++. ..-.....++.+ .|+.++|.+++..+... .-.+++.+|..
T Consensus 144 v~~lllSyRdiqdydamI~Lve~l~~~p~~~~~~~~~i~~~yafALnRrn~~gdre~Al~il~~~l~~-~~~~~~d~~gL 222 (374)
T PF13281_consen 144 VINLLLSYRDIQDYDAMIKLVETLEALPTCDVANQHNIKFQYAFALNRRNKPGDREKALQILLPVLES-DENPDPDTLGL 222 (374)
T ss_pred HHHHHHHhhhhhhHHHHHHHHHHhhccCccchhcchHHHHHHHHHHhhcccCCCHHHHHHHHHHHHhc-cCCCChHHHHH
Confidence 33556679999999999999999987310 1111 122234445666 89999999999996665 66788889988
Q ss_pred HHHHHH----h-----cCChHHHHHHHHhC-CCCCCHHHHHHHHHHHHhhCC-hH---HHHHHH----HHHHh---c-CC
Q 047767 560 MIDMLG----R-----AGILDKAEELLQQT-PGGGDCMMWSSLLRSCRVHGN-EI---IGRRVA----NILME---L-EP 617 (666)
Q Consensus 560 l~~~~~----~-----~g~~~~A~~~~~~~-~~~~~~~~~~~l~~~~~~~~~-~~---~a~~~~----~~~~~---~-~p 617 (666)
+++.|- . ....++|+..+.+. ...|+..+--.++......|. .+ +..++- ..+.+ . .-
T Consensus 223 ~GRIyKD~~~~s~~~d~~~ldkAi~~Y~kgFe~~~~~Y~GIN~AtLL~~~g~~~~~~~el~~i~~~l~~llg~kg~~~~~ 302 (374)
T PF13281_consen 223 LGRIYKDLFLESNFTDRESLDKAIEWYRKGFEIEPDYYSGINAATLLMLAGHDFETSEELRKIGVKLSSLLGRKGSLEKM 302 (374)
T ss_pred HHHHHHHHHHHcCccchHHHHHHHHHHHHHHcCCccccchHHHHHHHHHcCCcccchHHHHHHHHHHHHHHHhhcccccc
Confidence 887763 2 22467888888754 345644332223222333332 21 112222 11111 1 12
Q ss_pred CCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 618 VDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 618 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
.+...+.+++.++.-.|++++|.+..++|...
T Consensus 303 ~dYWd~ATl~Ea~vL~~d~~ka~~a~e~~~~l 334 (374)
T PF13281_consen 303 QDYWDVATLLEASVLAGDYEKAIQAAEKAFKL 334 (374)
T ss_pred ccHHHHHHHHHHHHHcCCHHHHHHHHHHHhhc
Confidence 24455668889999999999999999998754
No 255
>COG2976 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=95.00 E-value=1.4 Score=37.66 Aligned_cols=90 Identities=18% Similarity=0.051 Sum_probs=68.8
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHH-----HHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC
Q 047767 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSS-----LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634 (666)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~-----l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 634 (666)
+...+..+|++++|+.-++.....|....+.. |.+.....|.+|+|+..++...+-.- .+.....-|+++...|
T Consensus 95 lAk~~ve~~~~d~A~aqL~~~l~~t~De~lk~l~~lRLArvq~q~~k~D~AL~~L~t~~~~~w-~~~~~elrGDill~kg 173 (207)
T COG2976 95 LAKAEVEANNLDKAEAQLKQALAQTKDENLKALAALRLARVQLQQKKADAALKTLDTIKEESW-AAIVAELRGDILLAKG 173 (207)
T ss_pred HHHHHHhhccHHHHHHHHHHHHccchhHHHHHHHHHHHHHHHHHhhhHHHHHHHHhccccccH-HHHHHHHhhhHHHHcC
Confidence 45678899999999999997765553333333 44556788999999998887554332 2344667799999999
Q ss_pred CchHHHHHHHHHHhCC
Q 047767 635 EFEVSMQIRETALARK 650 (666)
Q Consensus 635 ~~~~A~~~~~~~~~~~ 650 (666)
+.++|+..|++..+.+
T Consensus 174 ~k~~Ar~ay~kAl~~~ 189 (207)
T COG2976 174 DKQEARAAYEKALESD 189 (207)
T ss_pred chHHHHHHHHHHHHcc
Confidence 9999999999999887
No 256
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.99 E-value=0.5 Score=47.52 Aligned_cols=154 Identities=17% Similarity=0.085 Sum_probs=81.0
Q ss_pred HHHhhCCHHHHHHHhc--cCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHH
Q 047767 461 AYSRCGHIELSHQVFE--KIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEG 537 (666)
Q Consensus 461 ~~~~~g~~~~A~~~~~--~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a 537 (666)
...-.++++++.+..+ ++. .-+....+.++.-+-+.|-++.|+.+.+.-. .-|. ...+.|+++.|
T Consensus 270 ~av~~~d~~~v~~~i~~~~ll~~i~~~~~~~i~~fL~~~G~~e~AL~~~~D~~--------~rFe----LAl~lg~L~~A 337 (443)
T PF04053_consen 270 TAVLRGDFEEVLRMIAASNLLPNIPKDQGQSIARFLEKKGYPELALQFVTDPD--------HRFE----LALQLGNLDIA 337 (443)
T ss_dssp HHHHTT-HHH-----HHHHTGGG--HHHHHHHHHHHHHTT-HHHHHHHSS-HH--------HHHH----HHHHCT-HHHH
T ss_pred HHHHcCChhhhhhhhhhhhhcccCChhHHHHHHHHHHHCCCHHHHHhhcCChH--------HHhH----HHHhcCCHHHH
Confidence 3444567777544443 111 1123446666666677777777776543211 1122 23356777777
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 538 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
.++.+.. ++...|..|.+...++|+++-|.+.+++.. -+..|+-.|...|+.+.-.++.+.+.+...
T Consensus 338 ~~~a~~~-------~~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~------d~~~L~lLy~~~g~~~~L~kl~~~a~~~~~ 404 (443)
T PF04053_consen 338 LEIAKEL-------DDPEKWKQLGDEALRQGNIELAEECYQKAK------DFSGLLLLYSSTGDREKLSKLAKIAEERGD 404 (443)
T ss_dssp HHHCCCC-------STHHHHHHHHHHHHHTTBHHHHHHHHHHCT-------HHHHHHHHHHCT-HHHHHHHHHHHHHTT-
T ss_pred HHHHHhc-------CcHHHHHHHHHHHHHcCCHHHHHHHHHhhc------CccccHHHHHHhCCHHHHHHHHHHHHHccC
Confidence 6665332 356678888888888888888888887766 244555566677776655555555444322
Q ss_pred CCcchHHHHHHHHhhcCCchHHHHHHH
Q 047767 618 VDFAVYSQVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 618 ~~~~~~~~l~~~~~~~g~~~~A~~~~~ 644 (666)
++..-.++.-.|+.++-.+++.
T Consensus 405 -----~n~af~~~~~lgd~~~cv~lL~ 426 (443)
T PF04053_consen 405 -----INIAFQAALLLGDVEECVDLLI 426 (443)
T ss_dssp -----HHHHHHHHHHHT-HHHHHHHHH
T ss_pred -----HHHHHHHHHHcCCHHHHHHHHH
Confidence 2223334445577777776664
No 257
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.91 E-value=1.4 Score=36.45 Aligned_cols=125 Identities=9% Similarity=0.086 Sum_probs=66.7
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh
Q 047767 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566 (666)
Q Consensus 487 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 566 (666)
..++..+...+.+.....+++.+...+ ..+...++.++..+++.+ .....+.++. .++.......++.+.+
T Consensus 11 ~~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~~-~~~ll~~l~~-------~~~~yd~~~~~~~c~~ 81 (140)
T smart00299 11 SEVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKYD-PQKEIERLDN-------KSNHYDIEKVGKLCEK 81 (140)
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHHC-HHHHHHHHHh-------ccccCCHHHHHHHHHH
Confidence 345555666666777777777776655 244445666666666542 2333333331 1223333445556666
Q ss_pred cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh-CChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 567 AGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH-GNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 567 ~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
.+.++++.-++.++.. +...+..+... ++.+.|++.+++ +.++..|..++..+.
T Consensus 82 ~~l~~~~~~l~~k~~~------~~~Al~~~l~~~~d~~~a~~~~~~-----~~~~~lw~~~~~~~l 136 (140)
T smart00299 82 AKLYEEAVELYKKDGN------FKDAIVTLIEHLGNYEKAIEYFVK-----QNNPELWAEVLKALL 136 (140)
T ss_pred cCcHHHHHHHHHhhcC------HHHHHHHHHHcccCHHHHHHHHHh-----CCCHHHHHHHHHHHH
Confidence 6666666666665541 11222223333 666667666654 335566666666554
No 258
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.90 E-value=3 Score=38.10 Aligned_cols=192 Identities=18% Similarity=0.144 Sum_probs=106.9
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhccCC-----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-
Q 047767 453 AVSCSLMDAYSRCGHIELSHQVFEKIP-----SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA- 526 (666)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~- 526 (666)
.........+...+.+..+...+.... ......+......+...+++..+...+.........+. ........
T Consensus 60 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~ 138 (291)
T COG0457 60 GLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALALDPDPD-LAEALLALG 138 (291)
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCCCCcc-hHHHHHHHH
Confidence 344444555555666666555555432 23344455555556666666677777766665332221 11222222
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCC----CchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHhh
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDA----DRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG--DCMMWSSLLRSCRVH 599 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~ 599 (666)
.+...|+++.|...+++... ..| ....+......+...++.++|...+.... ..+ ....+..+...+...
T Consensus 139 ~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 139 ALYELGDYEEALELYEKALE---LDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHcCCHHHHHHHHHHHHh---cCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 56666777777777776642 222 13333333344556667777777666544 222 245555666666666
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 600 GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 600 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
++++.|...+..+....|.....+..++..+...|..+++...+.....
T Consensus 216 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 264 (291)
T COG0457 216 GKYEEALEYYEKALELDPDNAEALYNLALLLLELGRYEEALEALEKALE 264 (291)
T ss_pred ccHHHHHHHHHHHHhhCcccHHHHhhHHHHHHHcCCHHHHHHHHHHHHH
Confidence 6777777777777777776555566666666655666777666655543
No 259
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.89 E-value=0.29 Score=45.29 Aligned_cols=159 Identities=17% Similarity=0.136 Sum_probs=116.5
Q ss_pred HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHH----HHHHHHhcCCh
Q 047767 495 RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSC----MIDMLGRAGIL 570 (666)
Q Consensus 495 ~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~----l~~~~~~~g~~ 570 (666)
.+|+..+|-..|+++.+. .+.|-..+...=.+|...|+.+.-...++++..+ -.||...|.. +.-++...|-+
T Consensus 115 ~~g~~h~a~~~wdklL~d-~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~--wn~dlp~~sYv~GmyaFgL~E~g~y 191 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDD-YPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK--WNADLPCYSYVHGMYAFGLEECGIY 191 (491)
T ss_pred ccccccHHHHHHHHHHHh-CchhhhhhhhhhhHHHhccchhhhhhHHHHhccc--cCCCCcHHHHHHHHHHhhHHHhccc
Confidence 468888999999998875 4667778888888999999999999999888753 4677655543 34456789999
Q ss_pred HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC----CcchHHHHHHHHhhcCCchHHHHHHH
Q 047767 571 DKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV----DFAVYSQVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 571 ~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~ 644 (666)
++|++.-++.. .++ |.-...++.......|+.+++.++.++--..=.. -..-|.+.+-.+...+.++.|+++|+
T Consensus 192 ~dAEk~A~ralqiN~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 192 DDAEKQADRALQINRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred hhHHHHHHhhccCCCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999998766 333 5555566666777889999999887764432111 13456778888889999999999998
Q ss_pred HHHhCCCCcCCC
Q 047767 645 TALARKLTRDIG 656 (666)
Q Consensus 645 ~~~~~~~~~~~~ 656 (666)
.=.-...+++.+
T Consensus 272 ~ei~k~l~k~Da 283 (491)
T KOG2610|consen 272 REIWKRLEKDDA 283 (491)
T ss_pred HHHHHHhhccch
Confidence 554444444433
No 260
>KOG2610 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.72 E-value=1.1 Score=41.57 Aligned_cols=156 Identities=11% Similarity=0.051 Sum_probs=108.0
Q ss_pred hhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH----HHHHHhcCCCcHHH
Q 047767 464 RCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL----CVLAGCNHSGMVKE 536 (666)
Q Consensus 464 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~----~l~~~~~~~g~~~~ 536 (666)
-.|+..+|-..++++.+ .|...++.-=.+|...|+...-...++++.-. ..||.+.|. .+..++...|-+++
T Consensus 115 ~~g~~h~a~~~wdklL~d~PtDlla~kfsh~a~fy~G~~~~~k~ai~kIip~-wn~dlp~~sYv~GmyaFgL~E~g~y~d 193 (491)
T KOG2610|consen 115 GRGKHHEAAIEWDKLLDDYPTDLLAVKFSHDAHFYNGNQIGKKNAIEKIIPK-WNADLPCYSYVHGMYAFGLEECGIYDD 193 (491)
T ss_pred ccccccHHHHHHHHHHHhCchhhhhhhhhhhHHHhccchhhhhhHHHHhccc-cCCCCcHHHHHHHHHHhhHHHhccchh
Confidence 45777777777877774 57788888888999999999988888888764 356664433 33345668899999
Q ss_pred HHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCC---C---CHHHHHHHHHHHHhhCChHHHHHHHH
Q 047767 537 GQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGG---G---DCMMWSSLLRSCRVHGNEIIGRRVAN 610 (666)
Q Consensus 537 a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~---~~~~~~~l~~~~~~~~~~~~a~~~~~ 610 (666)
|++.-++..+- -+.|.-...++...+.-.|+..++.++..+-... . -...|-...--+...+.++.|+++|+
T Consensus 194 AEk~A~ralqi--N~~D~Wa~Ha~aHVlem~~r~Keg~eFM~~ted~Wr~s~mlasHNyWH~Al~~iE~aeye~aleIyD 271 (491)
T KOG2610|consen 194 AEKQADRALQI--NRFDCWASHAKAHVLEMNGRHKEGKEFMYKTEDDWRQSWMLASHNYWHTALFHIEGAEYEKALEIYD 271 (491)
T ss_pred HHHHHHhhccC--CCcchHHHHHHHHHHHhcchhhhHHHHHHhcccchhhhhHHHhhhhHHHHHhhhcccchhHHHHHHH
Confidence 99999888743 1233555667778888899999999998865511 1 11122222333445589999999998
Q ss_pred HHH--hcCCCCcch
Q 047767 611 ILM--ELEPVDFAV 622 (666)
Q Consensus 611 ~~~--~~~p~~~~~ 622 (666)
.-+ ++..+|+.+
T Consensus 272 ~ei~k~l~k~Da~a 285 (491)
T KOG2610|consen 272 REIWKRLEKDDAVA 285 (491)
T ss_pred HHHHHHhhccchhh
Confidence 643 366666643
No 261
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=94.68 E-value=0.058 Score=32.01 Aligned_cols=26 Identities=23% Similarity=0.535 Sum_probs=21.0
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 622 VYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 622 ~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
+|..|+.+|.+.|++++|++++++..
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL 26 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQAL 26 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 46788999999999999999998754
No 262
>PF12921 ATP13: Mitochondrial ATPase expression; InterPro: IPR024319 ATPase expression protein 2 (also known as ATP13 in some species) is necessary for the expression of subunit 9 of mitochondrial ATPase. The protein has a basic amino terminal signal sequence that is cleaved upon import into mitochondria [].
Probab=94.67 E-value=0.33 Score=38.94 Aligned_cols=78 Identities=13% Similarity=0.088 Sum_probs=39.7
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhH--------------HhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC---
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMK--------------SVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--- 581 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~--------------~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--- 581 (666)
.++..++.++++.|+.+....+++..- ......|+..+..+++.+|+..|++..|+++++.+.
T Consensus 3 ~~~~~ii~al~r~g~~~~i~~~i~~~WgI~~~~~~~~~~~~~~spl~Pt~~lL~AIv~sf~~n~~i~~al~~vd~fs~~Y 82 (126)
T PF12921_consen 3 ELLCNIIYALGRSGQLDSIKSYIKSVWGIDVNGKKKEGDYPPSSPLYPTSRLLIAIVHSFGYNGDIFSALKLVDFFSRKY 82 (126)
T ss_pred HHHHHHHHHHhhcCCHHHHHHHHHHhcCCCCCCccccCccCCCCCCCCCHHHHHHHHHHHHhcccHHHHHHHHHHHHHHc
Confidence 344455555555555555555444332 111344556666666666666666666666655432
Q ss_pred -CCCCHHHHHHHHHHH
Q 047767 582 -GGGDCMMWSSLLRSC 596 (666)
Q Consensus 582 -~~~~~~~~~~l~~~~ 596 (666)
.+-+...|..|+.-+
T Consensus 83 ~I~i~~~~W~~Ll~W~ 98 (126)
T PF12921_consen 83 PIPIPKEFWRRLLEWA 98 (126)
T ss_pred CCCCCHHHHHHHHHHH
Confidence 222455555555543
No 263
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=94.46 E-value=10 Score=42.21 Aligned_cols=92 Identities=18% Similarity=0.197 Sum_probs=62.4
Q ss_pred HHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH--HHHHHHHhcCCCcHHHH
Q 047767 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT--FLCVLAGCNHSGMVKEG 537 (666)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~--~~~l~~~~~~~g~~~~a 537 (666)
-+|.++|+.++|.. +|...|+|.+|+.+..++.. .-|... -..|..-+...++.-+|
T Consensus 960 l~Ye~~GklekAl~------------------a~~~~~dWr~~l~~a~ql~~---~~de~~~~a~~L~s~L~e~~kh~eA 1018 (1265)
T KOG1920|consen 960 LMYERCGKLEKALK------------------AYKECGDWREALSLAAQLSE---GKDELVILAEELVSRLVEQRKHYEA 1018 (1265)
T ss_pred HHHHHhccHHHHHH------------------HHHHhccHHHHHHHHHhhcC---CHHHHHHHHHHHHHHHHHcccchhH
Confidence 35667777777744 45667899999888877643 223222 25566778888888888
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 538 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
-++..+..++ ..--+..|+++..|++|..+.....
T Consensus 1019 a~il~e~~sd---------~~~av~ll~ka~~~~eAlrva~~~~ 1053 (1265)
T KOG1920|consen 1019 AKILLEYLSD---------PEEAVALLCKAKEWEEALRVASKAK 1053 (1265)
T ss_pred HHHHHHHhcC---------HHHHHHHHhhHhHHHHHHHHHHhcc
Confidence 8888776543 3344567778888888888776544
No 264
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=94.37 E-value=1.4 Score=44.37 Aligned_cols=103 Identities=12% Similarity=0.089 Sum_probs=70.1
Q ss_pred HHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHH
Q 047767 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540 (666)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 540 (666)
...+.|+++.|.+..++.. +...|..|.....+.|+++-|.+.|++..+ |..|+-.|.-.|+.+.-.++
T Consensus 327 LAl~lg~L~~A~~~a~~~~--~~~~W~~Lg~~AL~~g~~~lAe~c~~k~~d---------~~~L~lLy~~~g~~~~L~kl 395 (443)
T PF04053_consen 327 LALQLGNLDIALEIAKELD--DPEKWKQLGDEALRQGNIELAEECYQKAKD---------FSGLLLLYSSTGDREKLSKL 395 (443)
T ss_dssp HHHHCT-HHHHHHHCCCCS--THHHHHHHHHHHHHTTBHHHHHHHHHHCT----------HHHHHHHHHHCT-HHHHHHH
T ss_pred HHHhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHcCCHHHHHHHHHhhcC---------ccccHHHHHHhCCHHHHHHH
Confidence 3456688888888877665 566888888888888888888888877544 55666667777777777777
Q ss_pred HHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 541 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
.+..... |. ++.-..++.-.|+.++..+++.+..
T Consensus 396 ~~~a~~~-~~------~n~af~~~~~lgd~~~cv~lL~~~~ 429 (443)
T PF04053_consen 396 AKIAEER-GD------INIAFQAALLLGDVEECVDLLIETG 429 (443)
T ss_dssp HHHHHHT-T-------HHHHHHHHHHHT-HHHHHHHHHHTT
T ss_pred HHHHHHc-cC------HHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 7666554 32 4555556666777777777776654
No 265
>PF04184 ST7: ST7 protein; InterPro: IPR007311 The ST7 (for suppression of tumorigenicity 7) protein is thought to be a tumour suppressor gene. The molecular function of this protein is uncertain.
Probab=94.29 E-value=1.9 Score=42.83 Aligned_cols=71 Identities=7% Similarity=-0.040 Sum_probs=44.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC-CCCcchHH
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG---DCMMWSSLLRSCRVHGNEIIGRRVANILMELE-PVDFAVYS 624 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-p~~~~~~~ 624 (666)
..+-..|..+..+.|+.++|++.++++. ..| .......|+..+...+.+.++..++.+--+.. |..+...+
T Consensus 259 ~y~KrRLAmCarklGr~~EAIk~~rdLlke~p~~~~l~IrenLie~LLelq~Yad~q~lL~kYdDi~lpkSAti~Y 334 (539)
T PF04184_consen 259 VYAKRRLAMCARKLGRLREAIKMFRDLLKEFPNLDNLNIRENLIEALLELQAYADVQALLAKYDDISLPKSATICY 334 (539)
T ss_pred hhhHHHHHHHHHHhCChHHHHHHHHHHHhhCCccchhhHHHHHHHHHHhcCCHHHHHHHHHHhccccCCchHHHHH
Confidence 3344456667777788888887777764 233 23466667777777777777777777754432 44443333
No 266
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=94.26 E-value=1.4 Score=36.69 Aligned_cols=109 Identities=13% Similarity=0.049 Sum_probs=62.7
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHHHHHhcCChHHHHHHHHhCCCCC-CHHHHHHHHHHHHhhCChHHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILDKAEELLQQTPGGG-DCMMWSSLLRSCRVHGNEIIG 605 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a 605 (666)
-.+.++.+++..+++.+.- ++|.. ..-..-+..+.+.|+|.+|+.+|+++...+ ....-..|+..|.....-..=
T Consensus 20 al~~~~~~D~e~lL~ALrv---LRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~CL~~~~D~~W 96 (160)
T PF09613_consen 20 ALRLGDPDDAEALLDALRV---LRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALCLYALGDPSW 96 (160)
T ss_pred HHccCChHHHHHHHHHHHH---hCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHHHHHcCChHH
Confidence 3456688888888888873 46662 222333456778888888888888877433 444444555555544332223
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHH
Q 047767 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 641 (666)
....+++++..++ +.+ ..|+..+....+...|.+
T Consensus 97 r~~A~evle~~~d-~~a-~~Lv~~Ll~~~~~~~a~~ 130 (160)
T PF09613_consen 97 RRYADEVLESGAD-PDA-RALVRALLARADLEPAHE 130 (160)
T ss_pred HHHHHHHHhcCCC-hHH-HHHHHHHHHhccccchhh
Confidence 4445556666553 333 344455555545455444
No 267
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=94.26 E-value=0.09 Score=30.60 Aligned_cols=31 Identities=16% Similarity=0.099 Sum_probs=22.5
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
+|..+...+...|++++|.+.|+++++++|+
T Consensus 3 ~~~~lg~~y~~~~~~~~A~~~~~~a~~~~~~ 33 (34)
T PF13181_consen 3 AYYNLGKIYEQLGDYEEALEYFEKALELNPD 33 (34)
T ss_dssp HHHHHHHHHHHTTSHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 4566667777777777777777777777774
No 268
>PF13428 TPR_14: Tetratricopeptide repeat
Probab=94.23 E-value=0.086 Score=33.07 Aligned_cols=33 Identities=18% Similarity=0.241 Sum_probs=28.9
Q ss_pred cchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
|.++..|+.+|...|++++|+++++++.+....
T Consensus 1 p~~~~~la~~~~~~G~~~~A~~~~~~~l~~~P~ 33 (44)
T PF13428_consen 1 PAAWLALARAYRRLGQPDEAERLLRRALALDPD 33 (44)
T ss_pred CHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcC
Confidence 467899999999999999999999999876543
No 269
>smart00299 CLH Clathrin heavy chain repeat homology.
Probab=94.23 E-value=2.7 Score=34.74 Aligned_cols=43 Identities=21% Similarity=0.297 Sum_probs=19.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhc
Q 047767 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRM 158 (666)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~ 158 (666)
.++..+...+.......+++.+...+ ..+...++.++..|++.
T Consensus 12 ~vv~~~~~~~~~~~l~~yLe~~~~~~-~~~~~~~~~li~ly~~~ 54 (140)
T smart00299 12 EVVELFEKRNLLEELIPYLESALKLN-SENPALQTKLIELYAKY 54 (140)
T ss_pred HHHHHHHhCCcHHHHHHHHHHHHccC-ccchhHHHHHHHHHHHH
Confidence 34444444444555555555544443 23444444455554443
No 270
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=94.22 E-value=5.4 Score=39.33 Aligned_cols=150 Identities=11% Similarity=-0.026 Sum_probs=84.9
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC--ch
Q 047767 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP---DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD--RQ 555 (666)
Q Consensus 481 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~ 555 (666)
....+|..+...+.+.|.++.|...+.++...+..+ +......-+..+-..|+.++|...++..... .+..+ ..
T Consensus 144 ~~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~-~~~~~~~~~ 222 (352)
T PF02259_consen 144 ELAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC-RLSKNIDSI 222 (352)
T ss_pred HHHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH-Hhhhccccc
Confidence 455678888888889999999998888887643211 2223334455566678888888888887763 12211 11
Q ss_pred HHHHHHHHHHhcCChHHHHHH-HHhCCCCCCHHHHHHHHHHHHhh------CChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 556 HYSCMIDMLGRAGILDKAEEL-LQQTPGGGDCMMWSSLLRSCRVH------GNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~-~~~~~~~~~~~~~~~l~~~~~~~------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
....+...+.. ..+..... .......--...+..+..-+... ++.+++...|+++.+..|.....|..++.
T Consensus 223 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~a~~~l~~a~w~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~k~~~~~a~ 300 (352)
T PF02259_consen 223 SNAELKSGLLE--SLEVISSTNLDKESKELKAKAFLLLAKWLDELYSKLSSESSDEILKYYKEATKLDPSWEKAWHSWAL 300 (352)
T ss_pred cHHHHhhcccc--ccccccccchhhhhHHHHHHHHHHHHHHHHhhccccccccHHHHHHHHHHHHHhChhHHHHHHHHHH
Confidence 11111111100 00000000 00000000122333333333344 78899999999999999999999998888
Q ss_pred HHhhc
Q 047767 629 FYSEI 633 (666)
Q Consensus 629 ~~~~~ 633 (666)
.+.+.
T Consensus 301 ~~~~~ 305 (352)
T PF02259_consen 301 FNDKL 305 (352)
T ss_pred HHHHH
Confidence 77654
No 271
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=94.20 E-value=0.25 Score=45.49 Aligned_cols=60 Identities=18% Similarity=0.147 Sum_probs=28.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
.++..++..+...|+.+.+.+.+++.. ..| +...|..++.+|.+.|+...|+..|+++..
T Consensus 154 ~~l~~lae~~~~~~~~~~~~~~l~~Li~~dp~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~ 215 (280)
T COG3629 154 KALTKLAEALIACGRADAVIEHLERLIELDPYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKK 215 (280)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCchHHHHHHHHHHH
Confidence 344444555555555555555444433 222 444555555555555555555555554443
No 272
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=94.16 E-value=7.6 Score=39.66 Aligned_cols=180 Identities=14% Similarity=0.088 Sum_probs=118.9
Q ss_pred CchHHHHHHHHHHHhhCCHHHHHHHhccCCCCC---HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--CCHHHHHHH
Q 047767 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPN---VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI--PDKVTFLCV 524 (666)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p~~~~~~~l 524 (666)
++..+|+..+..-.+.|+.+.+.-.|+...-|= ...|-..+.-....|+.+-|..++....+-..+ |....+.+.
T Consensus 295 aql~nw~~yLdf~i~~g~~~~~~~l~ercli~cA~Y~efWiky~~~m~~~~~~~~~~~~~~~~~~i~~k~~~~i~L~~a~ 374 (577)
T KOG1258|consen 295 AQLKNWRYYLDFEITLGDFSRVFILFERCLIPCALYDEFWIKYARWMESSGDVSLANNVLARACKIHVKKTPIIHLLEAR 374 (577)
T ss_pred HHHHHHHHHhhhhhhcccHHHHHHHHHHHHhHHhhhHHHHHHHHHHHHHcCchhHHHHHHHhhhhhcCCCCcHHHHHHHH
Confidence 346677777777888899999988888877532 223444444444558888888887766653222 222222222
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHH---HHHHhCC-CCCCHHHHHHH----HHH
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAE---ELLQQTP-GGGDCMMWSSL----LRS 595 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~---~~~~~~~-~~~~~~~~~~l----~~~ 595 (666)
-+-..|+++.|..+++.+.+. . |+ ...-..-+....+.|+.+.+. +++.... .+-+......+ .+-
T Consensus 375 --f~e~~~n~~~A~~~lq~i~~e--~-pg~v~~~l~~~~~e~r~~~~~~~~~~~~l~s~~~~~~~~~~i~~~l~~~~~r~ 449 (577)
T KOG1258|consen 375 --FEESNGNFDDAKVILQRIESE--Y-PGLVEVVLRKINWERRKGNLEDANYKNELYSSIYEGKENNGILEKLYVKFARL 449 (577)
T ss_pred --HHHhhccHHHHHHHHHHHHhh--C-CchhhhHHHHHhHHHHhcchhhhhHHHHHHHHhcccccCcchhHHHHHHHHHH
Confidence 245678999999999999986 3 66 333333455567888888888 5555443 12222222222 221
Q ss_pred -HHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC
Q 047767 596 -CRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634 (666)
Q Consensus 596 -~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 634 (666)
+...++.+.|..++.++.+..|++-..|..+......++
T Consensus 450 ~~~i~~d~~~a~~~l~~~~~~~~~~k~~~~~~~~~~~~~~ 489 (577)
T KOG1258|consen 450 RYKIREDADLARIILLEANDILPDCKVLYLELIRFELIQP 489 (577)
T ss_pred HHHHhcCHHHHHHHHHHhhhcCCccHHHHHHHHHHHHhCC
Confidence 345679999999999999999999999999988887765
No 273
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=94.15 E-value=0.28 Score=41.77 Aligned_cols=103 Identities=9% Similarity=-0.057 Sum_probs=74.1
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC-HHHHHHHHHHHH
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDAD-----RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGD-CMMWSSLLRSCR 597 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~-~~~~~~l~~~~~ 597 (666)
..-+.+.|++++|..-|..+... .++. ...|..-.-++.+.+.++.|++-..+.. ..|. ......-..+|-
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaiel~pty~kAl~RRAeaye 179 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIELNPTYEKALERRAEAYE 179 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHhcCchhHHHHHHHHHHHH
Confidence 45578899999999999999875 2332 3445555677889999999998876654 4552 233333445677
Q ss_pred hhCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 047767 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 629 (666)
+...+++|++-|+++++.+|....+....+.+
T Consensus 180 k~ek~eealeDyKki~E~dPs~~ear~~i~rl 211 (271)
T KOG4234|consen 180 KMEKYEEALEDYKKILESDPSRREAREAIARL 211 (271)
T ss_pred hhhhHHHHHHHHHHHHHhCcchHHHHHHHHhc
Confidence 88899999999999999999876555544443
No 274
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=94.10 E-value=9.1 Score=40.36 Aligned_cols=30 Identities=20% Similarity=0.340 Sum_probs=17.4
Q ss_pred CChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC
Q 047767 568 GILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG 600 (666)
Q Consensus 568 g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~ 600 (666)
++.++|+++.+ ...|...|..|+..+...=
T Consensus 675 ~die~AIefvK---eq~D~eLWe~LI~~~ldkP 704 (846)
T KOG2066|consen 675 RDIEKAIEFVK---EQDDSELWEDLINYSLDKP 704 (846)
T ss_pred hCHHHHHHHHH---hcCCHHHHHHHHHHhhcCc
Confidence 34444444433 3458888888887765543
No 275
>COG4105 ComL DNA uptake lipoprotein [General function prediction only]
Probab=94.09 E-value=3.5 Score=37.30 Aligned_cols=139 Identities=14% Similarity=0.141 Sum_probs=78.9
Q ss_pred HHHHcCChhHHHHHHHHHHHcCC-CC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCC
Q 047767 492 GYSRNGMGREALDMLEVMIQRGL-IP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569 (666)
Q Consensus 492 ~~~~~~~~~~a~~~~~~m~~~g~-~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 569 (666)
.-.+.|++++|.+.|+.+..... .| ...+-..++.++.+.++++.|+...++....++-.|+.. |...+.+++
T Consensus 43 ~~L~~gn~~~A~~~fe~l~~~~p~s~~~~qa~l~l~yA~Yk~~~y~~A~~~~drFi~lyP~~~n~d-Y~~YlkgLs---- 117 (254)
T COG4105 43 TELQKGNYEEAIKYFEALDSRHPFSPYSEQAQLDLAYAYYKNGEYDLALAYIDRFIRLYPTHPNAD-YAYYLKGLS---- 117 (254)
T ss_pred HHHhcCCHHHHHHHHHHHHHcCCCCcccHHHHHHHHHHHHhcccHHHHHHHHHHHHHhCCCCCChh-HHHHHHHHH----
Confidence 34556777777777777765321 11 223455556666777777777777777776655555532 222333333
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcch-----------------HHHHHHHHhh
Q 047767 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV-----------------YSQVSNFYSE 632 (666)
Q Consensus 570 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----------------~~~l~~~~~~ 632 (666)
.|..+. .++ ....-...|...++..++..|++..+ =...+..|.+
T Consensus 118 ------~~~~i~-~~~-----------rDq~~~~~A~~~f~~~i~ryPnS~Ya~dA~~~i~~~~d~LA~~Em~IaryY~k 179 (254)
T COG4105 118 ------YFFQID-DVT-----------RDQSAARAAFAAFKELVQRYPNSRYAPDAKARIVKLNDALAGHEMAIARYYLK 179 (254)
T ss_pred ------HhccCC-ccc-----------cCHHHHHHHHHHHHHHHHHCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 000 00111334556666666667764332 2457888999
Q ss_pred cCCchHHHHHHHHHHhCCCCcC
Q 047767 633 IGEFEVSMQIRETALARKLTRD 654 (666)
Q Consensus 633 ~g~~~~A~~~~~~~~~~~~~~~ 654 (666)
.|.+.-|..-++.+.+. .+.+
T Consensus 180 r~~~~AA~nR~~~v~e~-y~~t 200 (254)
T COG4105 180 RGAYVAAINRFEEVLEN-YPDT 200 (254)
T ss_pred hcChHHHHHHHHHHHhc-cccc
Confidence 99999999999988876 4433
No 276
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=94.09 E-value=0.99 Score=39.05 Aligned_cols=76 Identities=13% Similarity=0.140 Sum_probs=59.7
Q ss_pred HHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC----CcchHHHHHHHHhhcCCch
Q 047767 564 LGRAGILDKAEELLQQTPGGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV----DFAVYSQVSNFYSEIGEFE 637 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~ 637 (666)
..+.|+ ++|.+.|-.+...| +.......+.+|....|.++++.++.+++++.+. |+.++..|+.+|.+.|+++
T Consensus 117 Wsr~~d-~~A~~~fL~~E~~~~l~t~elq~aLAtyY~krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e 195 (203)
T PF11207_consen 117 WSRFGD-QEALRRFLQLEGTPELETAELQYALATYYTKRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYE 195 (203)
T ss_pred hhccCc-HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchh
Confidence 345566 78888888888666 4444555556667788999999999999995533 5889999999999999999
Q ss_pred HHH
Q 047767 638 VSM 640 (666)
Q Consensus 638 ~A~ 640 (666)
+|-
T Consensus 196 ~AY 198 (203)
T PF11207_consen 196 QAY 198 (203)
T ss_pred hhh
Confidence 874
No 277
>COG0457 NrfG FOG: TPR repeat [General function prediction only]
Probab=94.03 E-value=4.6 Score=36.74 Aligned_cols=166 Identities=17% Similarity=0.099 Sum_probs=126.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCc-hHHHHH
Q 047767 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQR-GLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCM 560 (666)
Q Consensus 483 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l 560 (666)
...+......+...+++..+...+...... ........+......+...+++..+.+.+...... .++. ......
T Consensus 59 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~ 135 (291)
T COG0457 59 AGLLLLLALALLKLGRLEEALELLEKALELELLPNLAEALLNLGLLLEALGKYEEALELLEKALAL---DPDPDLAEALL 135 (291)
T ss_pred hHHHHHHHHHHHHcccHHHHHHHHHHHHhhhhccchHHHHHHHHHHHHHHhhHHHHHHHHHHHHcC---CCCcchHHHHH
Confidence 567777888888999999999988887753 23344456777777778888899999999988754 3332 333333
Q ss_pred HH-HHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC-CcchHHHHHHHHhhc
Q 047767 561 ID-MLGRAGILDKAEELLQQTP-GGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYSEI 633 (666)
Q Consensus 561 ~~-~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~ 633 (666)
.. .+...|++++|...++... ..| ....+......+...++.+.+...+.++....|. ....+..++..+...
T Consensus 136 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (291)
T COG0457 136 ALGALYELGDYEEALELYEKALELDPELNELAEALLALGALLEALGRYEEALELLEKALKLNPDDDAEALLNLGLLYLKL 215 (291)
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCccchHHHHHHhhhHHHHhcCHHHHHHHHHHHHhhCcccchHHHHHhhHHHHHc
Confidence 34 7899999999999998764 222 2334444444467789999999999999999998 688999999999999
Q ss_pred CCchHHHHHHHHHHhCCC
Q 047767 634 GEFEVSMQIRETALARKL 651 (666)
Q Consensus 634 g~~~~A~~~~~~~~~~~~ 651 (666)
+++++|...+........
T Consensus 216 ~~~~~a~~~~~~~~~~~~ 233 (291)
T COG0457 216 GKYEEALEYYEKALELDP 233 (291)
T ss_pred ccHHHHHHHHHHHHhhCc
Confidence 999999999988776443
No 278
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=94.01 E-value=10 Score=40.65 Aligned_cols=51 Identities=16% Similarity=0.089 Sum_probs=27.2
Q ss_pred HhcCChhHHHHHHHHHHHcCC-C-----CCHHHHHHHhchhhhhcccchhhHHHHHH
Q 047767 391 LHSGNIKDAVEMFGFMVDEGI-G-----LDEVTLSTTLKALSVSASANLGSCRLLHC 441 (666)
Q Consensus 391 ~~~~~~~~a~~~~~~m~~~~~-~-----p~~~~~~~ll~~~~~~~~~~~~~a~~~~~ 441 (666)
+-.+++..|...++.|.+..- . .....+...+.++.+...|+.+.|...|.
T Consensus 372 ~~~~~~~~a~~~l~~~~~~~~~~~~~~~~~~~~~~~yL~gl~~q~~g~l~~A~~~y~ 428 (608)
T PF10345_consen 372 FIRGDWSKATQELEFMRQLCQRSPSKLYESLYPLLHYLLGLYYQSTGDLEAALYQYQ 428 (608)
T ss_pred HHCcCHHHHHHHHHHHHHHHhcCccchhhhhhHHHHHHHHHHHHHcCCHHHHHHHHh
Confidence 335677778777777765421 1 12234444444444445555555555554
No 279
>PF10300 DUF3808: Protein of unknown function (DUF3808); InterPro: IPR019412 This entry represents a family of proteins conserved from fungi to humans. In humans this protein is expressed in primary breast carcinomas but not in normal breast tissue, and has a putative eukaryotic RNP-1 RNA binding region and a candidate anchoring transmembrane domain. The human protein is coordinately regulated with oestrogen receptor, but is not necessarily oestradiol-responsive []. Members of this family carry a tetratricopeptide repeat (IPR013105 from INTERPRO) at their C terminus.
Probab=93.89 E-value=0.98 Score=46.23 Aligned_cols=128 Identities=14% Similarity=0.107 Sum_probs=75.5
Q ss_pred HHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHhcCCCcHHHHHHHHHHhHHhhCC--CCCchHH
Q 047767 485 CFTSIMNGYSR----NGMGREALDMLEVMIQRGLIPDKVTFLCVL-AGCNHSGMVKEGQLVFNSMKSVYGI--DADRQHY 557 (666)
Q Consensus 485 ~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~--~p~~~~~ 557 (666)
.|+..+..++. ..+.+.|.++++.+.+ .-|+...|...- +.+...|++++|++.++.......- +.....+
T Consensus 231 ~y~~~~~~~~~~~~~~~~~~~a~~lL~~~~~--~yP~s~lfl~~~gR~~~~~g~~~~Ai~~~~~a~~~q~~~~Ql~~l~~ 308 (468)
T PF10300_consen 231 WYHLVVPSFLGIDGEDVPLEEAEELLEEMLK--RYPNSALFLFFEGRLERLKGNLEEAIESFERAIESQSEWKQLHHLCY 308 (468)
T ss_pred HHHHHHHHHcCCcccCCCHHHHHHHHHHHHH--hCCCcHHHHHHHHHHHHHhcCHHHHHHHHHHhccchhhHHhHHHHHH
Confidence 34444444433 3455677888888877 457766554332 3466678888888888865431011 1113445
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHH-HhhCCh-------HHHHHHHHHHHh
Q 047767 558 SCMIDMLGRAGILDKAEELLQQTPGGG--DCMMWSSLLRSC-RVHGNE-------IIGRRVANILME 614 (666)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~-~~~~~~-------~~a~~~~~~~~~ 614 (666)
.-++..+.-.++|++|.+.|..+.... ....|.-+..+| ...|+. ++|.+++.++-.
T Consensus 309 ~El~w~~~~~~~w~~A~~~f~~L~~~s~WSka~Y~Y~~a~c~~~l~~~~~~~~~~~~a~~l~~~vp~ 375 (468)
T PF10300_consen 309 FELAWCHMFQHDWEEAAEYFLRLLKESKWSKAFYAYLAAACLLMLGREEEAKEHKKEAEELFRKVPK 375 (468)
T ss_pred HHHHHHHHHHchHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhccchhhhhhHHHHHHHHHHHHH
Confidence 556677778888888888888776322 334444444443 345666 677777776554
No 280
>PF13176 TPR_7: Tetratricopeptide repeat; PDB: 3SF4_C 3RO3_A 3RO2_A.
Probab=93.68 E-value=0.12 Score=30.70 Aligned_cols=27 Identities=15% Similarity=0.051 Sum_probs=20.4
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
+|..|...|.+.|++++|+++|++++.
T Consensus 1 al~~Lg~~~~~~g~~~~Ai~~y~~aL~ 27 (36)
T PF13176_consen 1 ALNNLGRIYRQQGDYEKAIEYYEQALA 27 (36)
T ss_dssp HHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 466788888888888888888888554
No 281
>PF07719 TPR_2: Tetratricopeptide repeat; InterPro: IPR013105 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. This repeat includes outlying Tetratricopeptide-like repeats (TPR) that are not matched by IPR001440 from INTERPRO.; PDB: 1XNF_B 3Q15_A 4ABN_A 1OUV_A 3U4T_A 3MA5_C 2KCV_A 2KCL_A 2XEV_A 3NF1_A ....
Probab=93.60 E-value=0.11 Score=30.18 Aligned_cols=31 Identities=19% Similarity=0.360 Sum_probs=26.0
Q ss_pred cchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 620 FAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 620 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+.++..+|.+|...|++++|++.+++..+..
T Consensus 1 a~~~~~lg~~~~~~~~~~~A~~~~~~al~l~ 31 (34)
T PF07719_consen 1 AEAWYYLGQAYYQLGNYEEAIEYFEKALELD 31 (34)
T ss_dssp HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHC
Confidence 3578899999999999999999999887643
No 282
>KOG4234 consensus TPR repeat-containing protein [General function prediction only]
Probab=93.37 E-value=1.1 Score=38.42 Aligned_cols=90 Identities=10% Similarity=0.002 Sum_probs=62.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHH------HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHH
Q 047767 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKV------TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMID 562 (666)
Q Consensus 490 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 562 (666)
.+-+...|++++|..-|.+.++. -|... .|..-..++.+.+.++.|+.-..+.++ +.|+ ......-..
T Consensus 102 GN~~F~ngdyeeA~skY~~Ale~--cp~~~~e~rsIly~Nraaa~iKl~k~e~aI~dcsKaie---l~pty~kAl~RRAe 176 (271)
T KOG4234|consen 102 GNELFKNGDYEEANSKYQEALES--CPSTSTEERSILYSNRAAALIKLRKWESAIEDCSKAIE---LNPTYEKALERRAE 176 (271)
T ss_pred HHHhhhcccHHHHHHHHHHHHHh--CccccHHHHHHHHhhhHHHHHHhhhHHHHHHHHHhhHh---cCchhHHHHHHHHH
Confidence 34577889999999999998883 34322 244444567788889998888887774 3554 334444456
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC
Q 047767 563 MLGRAGILDKAEELLQQTP-GGG 584 (666)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~-~~~ 584 (666)
+|.+..++++|++=++++. ..|
T Consensus 177 ayek~ek~eealeDyKki~E~dP 199 (271)
T KOG4234|consen 177 AYEKMEKYEEALEDYKKILESDP 199 (271)
T ss_pred HHHhhhhHHHHHHHHHHHHHhCc
Confidence 7888888999988888766 444
No 283
>KOG3941 consensus Intermediate in Toll signal transduction pathway (ECSIT) [Signal transduction mechanisms]
Probab=93.33 E-value=1 Score=40.77 Aligned_cols=98 Identities=14% Similarity=0.166 Sum_probs=76.2
Q ss_pred HHHhccCC--CCCHHHHHHHHHHHHHc-----CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCc-----------
Q 047767 472 HQVFEKIP--SPNVVCFTSIMNGYSRN-----GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM----------- 533 (666)
Q Consensus 472 ~~~~~~~~--~~~~~~~~~li~~~~~~-----~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~----------- 533 (666)
+..|.... +.|-.+|-..+..+... +.++-....++.|.+-|+.-|..+|+.|++.+-+..-
T Consensus 54 e~~F~aa~~~~RdK~sfl~~V~~F~E~sVr~R~HveFIy~ALk~m~eyGVerDl~vYk~LlnvfPKgkfiP~nvfQ~~F~ 133 (406)
T KOG3941|consen 54 EKQFEAAEPEKRDKDSFLAAVATFKEKSVRGRTHVEFIYTALKYMKEYGVERDLDVYKGLLNVFPKGKFIPQNVFQKVFL 133 (406)
T ss_pred hhhhhccCcccccHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhcchhhHHHHHHHHHhCcccccccHHHHHHHHh
Confidence 44555555 56777888887777543 4556666778889999999999999999988866432
Q ss_pred -----HHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCCh
Q 047767 534 -----VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570 (666)
Q Consensus 534 -----~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 570 (666)
-.=++.++++|... |+.||.++-..|++++.+.+-.
T Consensus 134 HYP~QQ~C~I~vLeqME~h-GVmPdkE~e~~lvn~FGr~~~p 174 (406)
T KOG3941|consen 134 HYPQQQNCAIKVLEQMEWH-GVMPDKEIEDILVNAFGRWNFP 174 (406)
T ss_pred hCchhhhHHHHHHHHHHHc-CCCCchHHHHHHHHHhcccccc
Confidence 23478899999887 9999999999999999988864
No 284
>PRK11619 lytic murein transglycosylase; Provisional
Probab=93.03 E-value=15 Score=39.44 Aligned_cols=93 Identities=6% Similarity=-0.154 Sum_probs=48.0
Q ss_pred HHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC---CCCcchHHHHHHHHhhcCCch
Q 047767 561 IDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE---PVDFAVYSQVSNFYSEIGEFE 637 (666)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~ 637 (666)
+..+...|+..+|...+..+....+......+.......|..+.++....+....+ -.-|..|......+...-..+
T Consensus 414 a~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~A~~~g~~~~ai~~~~~~~~~~~~~~rfp~~~~~~~~~~a~~~~v~ 493 (644)
T PRK11619 414 VRELMYWNMDNTARSEWANLVASRSKTEQAQLARYAFNQQWWDLSVQATIAGKLWDHLEERFPLAWNDEFRRYTSGKGIP 493 (644)
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHCCCHHHHHHHHhhchhHHHHHHhCCcchHHHHHHHHHHcCCC
Confidence 34455667777777776655434444445555555556677777776665433211 011334555555555555555
Q ss_pred HHHHHHHHHHhCCCCc
Q 047767 638 VSMQIRETALARKLTR 653 (666)
Q Consensus 638 ~A~~~~~~~~~~~~~~ 653 (666)
.++-.-=.-.|.+..+
T Consensus 494 ~~lv~ai~rqES~f~p 509 (644)
T PRK11619 494 QSYAMAIARQESAWNP 509 (644)
T ss_pred HHHHHHHHHHhcCCCC
Confidence 5553222223444443
No 285
>PF00515 TPR_1: Tetratricopeptide repeat; InterPro: IPR001440 The tetratrico peptide repeat (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees; within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. ; GO: 0005515 protein binding; PDB: 3SF4_C 2LNI_A 1ELW_A 2C0M_A 1FCH_B 3R9A_B 2J9Q_A 2C0L_A 1KT1_A 3FWV_A ....
Probab=92.85 E-value=0.16 Score=29.52 Aligned_cols=30 Identities=23% Similarity=0.504 Sum_probs=25.8
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 621 AVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.+|..+|.+|...|++++|++.|++..+..
T Consensus 2 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~ 31 (34)
T PF00515_consen 2 EAYYNLGNAYFQLGDYEEALEYYQRALELD 31 (34)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHHHhCCchHHHHHHHHHHHHC
Confidence 578999999999999999999999887643
No 286
>PF10345 Cohesin_load: Cohesin loading factor; InterPro: IPR019440 Cohesin loading factor is a conserved protein that has been characterised in fungi. It is associated with the cohesin complex and is required in G1 for cohesin binding to chromosomes, but is dispensable in G2 when cohesion has been established. It is often referred to as Ssl3 in Schizosaccharomyces pombe (Fission yeast), and Scc4 in Saccharomyces cerevisiae (Baker's yeast). It complexes with Mis4 [].
Probab=92.79 E-value=16 Score=39.22 Aligned_cols=49 Identities=10% Similarity=0.105 Sum_probs=31.0
Q ss_pred hCChHHHHHHHHHHHhcC---CCCcc-hHH-----HHHHHHhhcCCchHHHHHHHHHH
Q 047767 599 HGNEIIGRRVANILMELE---PVDFA-VYS-----QVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 599 ~~~~~~a~~~~~~~~~~~---p~~~~-~~~-----~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
.|+..+............ |+... .|. .+...|...|+.++|....++..
T Consensus 547 ~~~~~e~~~~s~~a~~~A~k~~d~~~~LW~~v~~~~l~~~~~~~G~~~ka~~~~~~~~ 604 (608)
T PF10345_consen 547 EGDVGEQAKKSARAFQLAKKSSDYSDQLWHLVASGMLADSYEVQGDRDKAEEARQQLD 604 (608)
T ss_pred cCCHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHcCcHHHHHHHHHHHH
Confidence 678777666655555422 33222 332 34556778899999999887664
No 287
>PF09205 DUF1955: Domain of unknown function (DUF1955); InterPro: IPR015288 Members of this family are found in hypothetical proteins synthesised by the Archaeal organism Sulfolobus. Their exact function has not, as yet, been determined. ; PDB: 1WY6_A.
Probab=92.66 E-value=4.3 Score=32.31 Aligned_cols=66 Identities=9% Similarity=0.043 Sum_probs=45.2
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 047767 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345 (666)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 345 (666)
...+..+..+..+|+-+.-.+++.++.. .-.+++.....+..+|.+.|+..++..++..+-+.|+.
T Consensus 87 e~vD~ALd~lv~~~kkDqLdki~~~l~k-n~~~~p~~L~kia~Ay~klg~~r~~~ell~~ACekG~k 152 (161)
T PF09205_consen 87 EYVDLALDILVKQGKKDQLDKIYNELKK-NEEINPEFLVKIANAYKKLGNTREANELLKEACEKGLK 152 (161)
T ss_dssp HHHHHHHHHHHHTT-HHHHHHHHHHH------S-HHHHHHHHHHHHHTT-HHHHHHHHHHHHHTT-H
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHhh-ccCCCHHHHHHHHHHHHHhcchhhHHHHHHHHHHhchH
Confidence 3455667778888888888888888764 34677777888888888888888888888888877754
No 288
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=92.53 E-value=18 Score=39.09 Aligned_cols=27 Identities=7% Similarity=0.048 Sum_probs=14.7
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 625 QVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 625 ~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
.|+.++...|+.++|.....++.....
T Consensus 623 ~LA~l~~~~Gdl~~A~~~l~~~~~l~~ 649 (894)
T COG2909 623 MLAELEFLRGDLDKALAQLDELERLLL 649 (894)
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHHhc
Confidence 455555556666666555555544333
No 289
>COG5107 RNA14 Pre-mRNA 3'-end processing (cleavage and polyadenylation) factor [RNA processing and modification]
Probab=92.51 E-value=12 Score=36.88 Aligned_cols=124 Identities=14% Similarity=0.147 Sum_probs=62.9
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhhC-CCCCchHHHHHHHHHHhcCChHHHHHHHHh-CCCCCCHHHHHH-HHHHHH
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYG-IDADRQHYSCMIDMLGRAGILDKAEELLQQ-TPGGGDCMMWSS-LLRSCR 597 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~-~~~~~~~~~~~~-l~~~~~ 597 (666)
|...+++-.+..-++.|..+|-++... + +.+++.++++++..++ .|+...|..+|+- |..-||...|.. .+.-+.
T Consensus 400 ~C~~~N~v~r~~Gl~aaR~~F~k~rk~-~~~~h~vyi~~A~~E~~~-~~d~~ta~~ifelGl~~f~d~~~y~~kyl~fLi 477 (660)
T COG5107 400 FCVHLNYVLRKRGLEAARKLFIKLRKE-GIVGHHVYIYCAFIEYYA-TGDRATAYNIFELGLLKFPDSTLYKEKYLLFLI 477 (660)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHhcc-CCCCcceeeeHHHHHHHh-cCCcchHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 444555555555566666666666655 4 4455666666665543 4555666666653 333444443332 222233
Q ss_pred hhCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 598 VHGNEIIGRRVANILMELEPVD--FAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
..++-..|..+|+..++.-..+ ..+|..++..-..-|+.+-|..+=+.+
T Consensus 478 ~inde~naraLFetsv~r~~~~q~k~iy~kmi~YEs~~G~lN~v~sLe~rf 528 (660)
T COG5107 478 RINDEENARALFETSVERLEKTQLKRIYDKMIEYESMVGSLNNVYSLEERF 528 (660)
T ss_pred HhCcHHHHHHHHHHhHHHHHHhhhhHHHHHHHHHHHhhcchHHHHhHHHHH
Confidence 4455555666666544422211 345555555555555555555444444
No 290
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=92.39 E-value=3.4 Score=34.62 Aligned_cols=128 Identities=11% Similarity=0.045 Sum_probs=85.4
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 047767 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561 (666)
Q Consensus 483 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 561 (666)
...|..-++ +++.+..++|+.-|.++.+.|...-++ .-..........|+...|...|+++-.. .|.+....-+.
T Consensus 59 gd~flaAL~-lA~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~d---t~~P~~~rd~A 134 (221)
T COG4649 59 GDAFLAALK-LAQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAAD---TSIPQIGRDLA 134 (221)
T ss_pred hHHHHHHHH-HHHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhcc---CCCcchhhHHH
Confidence 334444443 467788999999999998877554333 2223334567889999999999998755 33333332222
Q ss_pred -----HHHHhcCChHHHHHHHHhCCCC--C-CHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 562 -----DMLGRAGILDKAEELLQQTPGG--G-DCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 562 -----~~~~~~g~~~~A~~~~~~~~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
..+...|.+++...-++-+... | ....-..|..+-.+.|++..|...|+++..
T Consensus 135 Rlraa~lLvD~gsy~dV~srvepLa~d~n~mR~sArEALglAa~kagd~a~A~~~F~qia~ 195 (221)
T COG4649 135 RLRAAYLLVDNGSYDDVSSRVEPLAGDGNPMRHSAREALGLAAYKAGDFAKAKSWFVQIAN 195 (221)
T ss_pred HHHHHHHHhccccHHHHHHHhhhccCCCChhHHHHHHHHhHHHHhccchHHHHHHHHHHHc
Confidence 3456778888888877766522 2 334556677777888899999988888776
No 291
>PF09613 HrpB1_HrpK: Bacterial type III secretion protein (HrpB1_HrpK); InterPro: IPR013394 This family of proteins is encoded by genes found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.04 E-value=1.1 Score=37.32 Aligned_cols=81 Identities=20% Similarity=0.031 Sum_probs=54.4
Q ss_pred hHHHHHHHHH---HhcCChHHHHHHHHhCC-CCCCHHHHH-HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 047767 555 QHYSCMIDML---GRAGILDKAEELLQQTP-GGGDCMMWS-SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629 (666)
Q Consensus 555 ~~~~~l~~~~---~~~g~~~~A~~~~~~~~-~~~~~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 629 (666)
.+.+.|++.. .+.++.+++..+++.+. ..|...... .-...+...|++.+|+.+++.+.+..|..+.+--.++.+
T Consensus 8 ~iv~gLie~~~~al~~~~~~D~e~lL~ALrvLRP~~~e~~~~~~~l~i~r~~w~dA~rlLr~l~~~~~~~p~~kALlA~C 87 (160)
T PF09613_consen 8 EIVGGLIEVLSVALRLGDPDDAEALLDALRVLRPEFPELDLFDGWLHIVRGDWDDALRLLRELEERAPGFPYAKALLALC 87 (160)
T ss_pred HHHHHHHHHHHHHHccCChHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhCCHHHHHHHHHHHhccCCCChHHHHHHHHH
Confidence 3444555443 46778888888888765 455433332 233446678888888888888877778777777777777
Q ss_pred HhhcCC
Q 047767 630 YSEIGE 635 (666)
Q Consensus 630 ~~~~g~ 635 (666)
+...|+
T Consensus 88 L~~~~D 93 (160)
T PF09613_consen 88 LYALGD 93 (160)
T ss_pred HHHcCC
Confidence 777766
No 292
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=92.02 E-value=0.98 Score=36.78 Aligned_cols=70 Identities=11% Similarity=-0.089 Sum_probs=33.2
Q ss_pred hcCChHHHHHHHHhCC-CCCCHHHH-HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCC
Q 047767 566 RAGILDKAEELLQQTP-GGGDCMMW-SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635 (666)
Q Consensus 566 ~~g~~~~A~~~~~~~~-~~~~~~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 635 (666)
..++++++..+++.+. ..|+..-. ..-...+...|++++|.++++.+.+..|..+..--.++.++...|+
T Consensus 22 ~~~d~~D~e~lLdALrvLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~~~~p~~kAL~A~CL~al~D 93 (153)
T TIGR02561 22 RSADPYDAQAMLDALRVLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSAGAPPYGKALLALCLNAKGD 93 (153)
T ss_pred hcCCHHHHHHHHHHHHHhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccCCCchHHHHHHHHHHHhcCC
Confidence 3555555555555443 23322111 1122234455566666666666555555444444445555555544
No 293
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.99 E-value=20 Score=38.40 Aligned_cols=81 Identities=12% Similarity=0.044 Sum_probs=44.9
Q ss_pred HHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHH
Q 047767 186 FCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIE 265 (666)
Q Consensus 186 ~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 265 (666)
+.+.|++++|...|-+-... +.|. .+++-+........-..+++.+.+.| -.+...-+.|+.+|.+.++.++
T Consensus 378 Ly~Kgdf~~A~~qYI~tI~~-le~s-----~Vi~kfLdaq~IknLt~YLe~L~~~g--la~~dhttlLLncYiKlkd~~k 449 (933)
T KOG2114|consen 378 LYGKGDFDEATDQYIETIGF-LEPS-----EVIKKFLDAQRIKNLTSYLEALHKKG--LANSDHTTLLLNCYIKLKDVEK 449 (933)
T ss_pred HHhcCCHHHHHHHHHHHccc-CChH-----HHHHHhcCHHHHHHHHHHHHHHHHcc--cccchhHHHHHHHHHHhcchHH
Confidence 44567777777666443321 2231 23334444444445555666666666 3334444667777777777777
Q ss_pred HHHHhccCC
Q 047767 266 AKKSFDFIP 274 (666)
Q Consensus 266 A~~~~~~~~ 274 (666)
-.+..+...
T Consensus 450 L~efI~~~~ 458 (933)
T KOG2114|consen 450 LTEFISKCD 458 (933)
T ss_pred HHHHHhcCC
Confidence 666665554
No 294
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=91.95 E-value=0.5 Score=43.85 Aligned_cols=91 Identities=12% Similarity=0.091 Sum_probs=54.8
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhCCCCC--CHHHHHHHHHHHHhhCChH
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTPGGG--DCMMWSSLLRSCRVHGNEI 603 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~ 603 (666)
-|.++|.+++|+..|.... .+.| ++.++..-..+|.+..++..|..-......-. -...|..-+.+-...|+..
T Consensus 106 ~yFKQgKy~EAIDCYs~~i---a~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~ 182 (536)
T KOG4648|consen 106 TYFKQGKYEEAIDCYSTAI---AVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNM 182 (536)
T ss_pred hhhhccchhHHHHHhhhhh---ccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHH
Confidence 3556666677766666655 3345 45556556666666666666665554433111 2334555555555667777
Q ss_pred HHHHHHHHHHhcCCCCc
Q 047767 604 IGRRVANILMELEPVDF 620 (666)
Q Consensus 604 ~a~~~~~~~~~~~p~~~ 620 (666)
+|.+-++.++++.|++-
T Consensus 183 EAKkD~E~vL~LEP~~~ 199 (536)
T KOG4648|consen 183 EAKKDCETVLALEPKNI 199 (536)
T ss_pred HHHHhHHHHHhhCcccH
Confidence 77888888888887743
No 295
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=91.85 E-value=5.7 Score=33.62 Aligned_cols=136 Identities=8% Similarity=0.049 Sum_probs=82.9
Q ss_pred HHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcc-CChHHHHHHhccCC
Q 047767 196 LRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC-GSLIEAKKSFDFIP 274 (666)
Q Consensus 196 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~A~~~~~~~~ 274 (666)
.+.++.+.+.+++|+...+..++..+.+.|......+++. .+-++++..+...|+..-.+. .-..-|.+.+.++.
T Consensus 14 lEYirSl~~~~i~~~~~L~~lli~lLi~~~~~~~L~qllq----~~Vi~DSk~lA~~LLs~~~~~~~~~Ql~lDMLkRL~ 89 (167)
T PF07035_consen 14 LEYIRSLNQHNIPVQHELYELLIDLLIRNGQFSQLHQLLQ----YHVIPDSKPLACQLLSLGNQYPPAYQLGLDMLKRLG 89 (167)
T ss_pred HHHHHHHHHcCCCCCHHHHHHHHHHHHHcCCHHHHHHHHh----hcccCCcHHHHHHHHHhHccChHHHHHHHHHHHHhh
Confidence 4556667777888888888888888888887665544443 331333333333333322111 01233344444433
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhC
Q 047767 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLG 343 (666)
Q Consensus 275 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 343 (666)
..+..++..+...|++-+|+++.+.... .+......++.+....+|...-..+++...+.+
T Consensus 90 ----~~~~~iievLL~~g~vl~ALr~ar~~~~----~~~~~~~~fLeAA~~~~D~~lf~~V~~ff~~~n 150 (167)
T PF07035_consen 90 ----TAYEEIIEVLLSKGQVLEALRYARQYHK----VDSVPARKFLEAAANSNDDQLFYAVFRFFEERN 150 (167)
T ss_pred ----hhHHHHHHHHHhCCCHHHHHHHHHHcCC----cccCCHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 2466677888999999999998877522 233344667778777777776666666666544
No 296
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=91.66 E-value=12 Score=35.32 Aligned_cols=18 Identities=6% Similarity=-0.239 Sum_probs=11.5
Q ss_pred HHhhCChHHHHHHHHHHH
Q 047767 596 CRVHGNEIIGRRVANILM 613 (666)
Q Consensus 596 ~~~~~~~~~a~~~~~~~~ 613 (666)
+.+.++++.|.+.|+-++
T Consensus 256 ~~~~k~y~~A~~w~~~al 273 (278)
T PF08631_consen 256 HYKAKNYDEAIEWYELAL 273 (278)
T ss_pred HHhhcCHHHHHHHHHHHH
Confidence 445667777777776543
No 297
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=91.58 E-value=4.2 Score=38.53 Aligned_cols=94 Identities=13% Similarity=0.217 Sum_probs=57.8
Q ss_pred HHHHHHHhccCCC-------CCHHHHHHHHHHHHHcCC----hhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCCc-
Q 047767 468 IELSHQVFEKIPS-------PNVVCFTSIMNGYSRNGM----GREALDMLEVMIQRGLIPDKV--TFLCVLAGCNHSGM- 533 (666)
Q Consensus 468 ~~~A~~~~~~~~~-------~~~~~~~~li~~~~~~~~----~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~- 533 (666)
..+|..+|+.|++ ++-.++..|+.. ..++ .+.+..+|+.+.+.|+..+.. ....++..+.....
T Consensus 119 ~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~ 196 (297)
T PF13170_consen 119 IQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDVEELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQE 196 (297)
T ss_pred HHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchH
Confidence 3456667776664 334445555433 2222 345678888888888877554 33334433332222
Q ss_pred -HHHHHHHHHHhHHhhCCCCCchHHHHHHHHH
Q 047767 534 -VKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564 (666)
Q Consensus 534 -~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 564 (666)
+.++.++++.+.+. |+++....|..++-.-
T Consensus 197 ~v~r~~~l~~~l~~~-~~kik~~~yp~lGlLa 227 (297)
T PF13170_consen 197 KVARVIELYNALKKN-GVKIKYMHYPTLGLLA 227 (297)
T ss_pred HHHHHHHHHHHHHHc-CCccccccccHHHHHH
Confidence 45788899999888 9998888787665443
No 298
>COG4649 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=91.35 E-value=7.9 Score=32.57 Aligned_cols=117 Identities=10% Similarity=0.065 Sum_probs=48.5
Q ss_pred HhhCCHHHHHHHhccCCCCCHHHHHHHHH-----HHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHH--HHHhcCCCcH
Q 047767 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMN-----GYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCV--LAGCNHSGMV 534 (666)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~-----~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l--~~~~~~~g~~ 534 (666)
.+.+..++|..-|.++.+.+--.|-.|.. ...+.|+...|...|+++-...-.|-.. -...| ...+...|.+
T Consensus 69 A~~~k~d~Alaaf~~lektg~g~YpvLA~mr~at~~a~kgdta~AV~aFdeia~dt~~P~~~rd~ARlraa~lLvD~gsy 148 (221)
T COG4649 69 AQENKTDDALAAFTDLEKTGYGSYPVLARMRAATLLAQKGDTAAAVAAFDEIAADTSIPQIGRDLARLRAAYLLVDNGSY 148 (221)
T ss_pred HHcCCchHHHHHHHHHHhcCCCcchHHHHHHHHHHHhhcccHHHHHHHHHHHhccCCCcchhhHHHHHHHHHHHhccccH
Confidence 34445555555555554433333333221 2334455555555555544422222211 11111 1123444555
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 047767 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (666)
+.....++-+... +-+.....-.+|.-+-.+.|++.+|.++|..+
T Consensus 149 ~dV~srvepLa~d-~n~mR~sArEALglAa~kagd~a~A~~~F~qi 193 (221)
T COG4649 149 DDVSSRVEPLAGD-GNPMRHSAREALGLAAYKAGDFAKAKSWFVQI 193 (221)
T ss_pred HHHHHHhhhccCC-CChhHHHHHHHHhHHHHhccchHHHHHHHHHH
Confidence 5554444444332 22222333344444444555555555555543
No 299
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=91.34 E-value=0.43 Score=27.30 Aligned_cols=27 Identities=19% Similarity=0.030 Sum_probs=14.1
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
+...+.+.|+.++|.+.++++++..|+
T Consensus 6 ~a~~~~~~g~~~~A~~~~~~~~~~~P~ 32 (33)
T PF13174_consen 6 LARCYYKLGDYDEAIEYFQRLIKRYPD 32 (33)
T ss_dssp HHHHHHHHCHHHHHHHHHHHHHHHSTT
T ss_pred HHHHHHHccCHHHHHHHHHHHHHHCcC
Confidence 344444555555555555555555553
No 300
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=91.32 E-value=0.31 Score=41.02 Aligned_cols=27 Identities=11% Similarity=0.144 Sum_probs=10.4
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 605 GRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 605 a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
|+.-|++++.++|+...++..||.+|.
T Consensus 54 AisK~eeAL~I~P~~hdAlw~lGnA~t 80 (186)
T PF06552_consen 54 AISKFEEALKINPNKHDALWCLGNAYT 80 (186)
T ss_dssp HHHHHHHHHHH-TT-HHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHH
Confidence 333333444444444444444444443
No 301
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.31 E-value=1.9 Score=37.99 Aligned_cols=111 Identities=14% Similarity=0.164 Sum_probs=57.1
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCH-HHHHHHHHHHHhhCChHHHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDC-MMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~ 606 (666)
+.-.+.+++|.+++.+....+.+. ..|+.-..+|+ +|-++.-+...+.|. .+|... .-|.+.++.++|.
T Consensus 24 fgg~~k~eeAadl~~~Aan~ykla---K~w~~AG~afl------kaA~~h~k~~skhDaat~YveA-~~cykk~~~~eAv 93 (288)
T KOG1586|consen 24 FGGSNKYEEAAELYERAANMYKLA---KNWSAAGDAFL------KAADLHLKAGSKHDAATTYVEA-ANCYKKVDPEEAV 93 (288)
T ss_pred cCCCcchHHHHHHHHHHHHHHHHH---HhHHHHHHHHH------HHHHHHHhcCCchhHHHHHHHH-HHHhhccChHHHH
Confidence 344457888888887765443221 11222222221 222222222222222 223222 2345556778888
Q ss_pred HHHHHHHhcCCCC------cchHHHHHHHHhhc-CCchHHHHHHHHHHh
Q 047767 607 RVANILMELEPVD------FAVYSQVSNFYSEI-GEFEVSMQIRETALA 648 (666)
Q Consensus 607 ~~~~~~~~~~p~~------~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~ 648 (666)
..+++++++..+- +..+..++.+|-.. -++++|+..|+...+
T Consensus 94 ~cL~~aieIyt~~Grf~~aAk~~~~iaEiyEsdl~d~ekaI~~YE~Aae 142 (288)
T KOG1586|consen 94 NCLEKAIEIYTDMGRFTMAAKHHIEIAEIYESDLQDFEKAIAHYEQAAE 142 (288)
T ss_pred HHHHHHHHHHHhhhHHHHHHhhhhhHHHHHhhhHHHHHHHHHHHHHHHH
Confidence 8888777755432 22234677777655 677777777776654
No 302
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=91.31 E-value=0.82 Score=42.95 Aligned_cols=181 Identities=14% Similarity=0.063 Sum_probs=115.3
Q ss_pred CCHHHHHHHhccCCC------CCHHHHHHHHHHHHHcCChhHHHHHH----HHHHHcCCCCCH---HHHHHHHHHhcCCC
Q 047767 466 GHIELSHQVFEKIPS------PNVVCFTSIMNGYSRNGMGREALDML----EVMIQRGLIPDK---VTFLCVLAGCNHSG 532 (666)
Q Consensus 466 g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~g~~p~~---~~~~~l~~~~~~~g 532 (666)
.+.++|+..|..... .-..+|..+..+.+..|++++++..- +...+ ..-.. ..|..+..++.+..
T Consensus 20 ~~~~~al~~w~~~L~~l~~~~~Rf~~lG~l~~a~s~~g~y~~mL~~a~sqi~~a~~--~~ds~~~~ea~lnlar~~e~l~ 97 (518)
T KOG1941|consen 20 NQTEKALQVWTKVLEKLSDLMGRFRVLGCLVTAHSEMGRYKEMLKFAVSQIDTARE--LEDSDFLLEAYLNLARSNEKLC 97 (518)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhHHHHHHHHHHHHHHHHHHH--HHHHHHHHHHHHHHHHHHHHHH
Confidence 444555555544332 12345666777778888877765432 22222 11111 24555556666666
Q ss_pred cHHHHHHHHHHhHHhhCCCCC---chHHHHHHHHHHhcCChHHHHHHHHhCC------CCC--CHHHHHHHHHHHHhhCC
Q 047767 533 MVKEGQLVFNSMKSVYGIDAD---RQHYSCMIDMLGRAGILDKAEELLQQTP------GGG--DCMMWSSLLRSCRVHGN 601 (666)
Q Consensus 533 ~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~------~~~--~~~~~~~l~~~~~~~~~ 601 (666)
++.+++.+-..-....|..|. -.....+..++...+.++++++.|+... ..| ....+-.|...|....|
T Consensus 98 ~f~kt~~y~k~~l~lpgt~~~~~~gq~~l~~~~Ahlgls~fq~~Lesfe~A~~~A~~~~D~~LElqvcv~Lgslf~~l~D 177 (518)
T KOG1941|consen 98 EFHKTISYCKTCLGLPGTRAGQLGGQVSLSMGNAHLGLSVFQKALESFEKALRYAHNNDDAMLELQVCVSLGSLFAQLKD 177 (518)
T ss_pred HhhhHHHHHHHHhcCCCCCcccccchhhhhHHHHhhhHHHHHHHHHHHHHHHHHhhccCCceeeeehhhhHHHHHHHHHh
Confidence 667777776665544455552 2334457778888889999999998643 122 34467778888889999
Q ss_pred hHHHHHHHHHHHhcCCC----C------cchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 602 EIIGRRVANILMELEPV----D------FAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 602 ~~~a~~~~~~~~~~~p~----~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
+++|..+..++.++... | .-+.++++-++...|+..+|.+.-++..+
T Consensus 178 ~~Kal~f~~kA~~lv~s~~l~d~~~kyr~~~lyhmaValR~~G~LgdA~e~C~Ea~k 234 (518)
T KOG1941|consen 178 YEKALFFPCKAAELVNSYGLKDWSLKYRAMSLYHMAVALRLLGRLGDAMECCEEAMK 234 (518)
T ss_pred hhHHhhhhHhHHHHHHhcCcCchhHHHHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 99999888888774322 2 23457788899999999999988776543
No 303
>COG4785 NlpI Lipoprotein NlpI, contains TPR repeats [General function prediction only]
Probab=91.05 E-value=1.7 Score=37.77 Aligned_cols=87 Identities=15% Similarity=0.045 Sum_probs=46.6
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHH
Q 047767 531 SGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRR 607 (666)
Q Consensus 531 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~ 607 (666)
.|-++-|+--|.... .+.|+ +..||.|.--+...|+++.|.+.|+... ..| ...+...-.-++.--|++..|.+
T Consensus 78 lGL~~LAR~DftQaL---ai~P~m~~vfNyLG~Yl~~a~~fdaa~eaFds~~ELDp~y~Ya~lNRgi~~YY~gR~~LAq~ 154 (297)
T COG4785 78 LGLRALARNDFSQAL---AIRPDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRYKLAQD 154 (297)
T ss_pred hhHHHHHhhhhhhhh---hcCCCcHHHHHHHHHHHHhcccchHHHHHhhhHhccCCcchHHHhccceeeeecCchHhhHH
Confidence 344444444444443 45666 5666666666666677777776666544 222 22222222223344566666666
Q ss_pred HHHHHHhcCCCCc
Q 047767 608 VANILMELEPVDF 620 (666)
Q Consensus 608 ~~~~~~~~~p~~~ 620 (666)
-+.+--+.+|+||
T Consensus 155 d~~~fYQ~D~~DP 167 (297)
T COG4785 155 DLLAFYQDDPNDP 167 (297)
T ss_pred HHHHHHhcCCCCh
Confidence 6666666666654
No 304
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=91.03 E-value=0.87 Score=41.89 Aligned_cols=102 Identities=14% Similarity=0.151 Sum_probs=80.1
Q ss_pred CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCC-CC-----chhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcc
Q 047767 38 PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPA-RD-----MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111 (666)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~-----~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 111 (666)
.|.+.+..+...++..-....+++++...+-+.+. |+ ..+-...++.+. .-+++.++.++..=+..|+-||..
T Consensus 58 ~g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf 136 (418)
T KOG4570|consen 58 RGLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQF 136 (418)
T ss_pred cCCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchh
Confidence 67778888888888887788899999998888874 21 111222333333 337889999999999999999999
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHhc
Q 047767 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLG 140 (666)
Q Consensus 112 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 140 (666)
+++.++..+.+.+++..|.++...|....
T Consensus 137 ~~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 137 TFCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred hHHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 99999999999999999999888887654
No 305
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=91.00 E-value=0.28 Score=26.45 Aligned_cols=24 Identities=4% Similarity=0.005 Sum_probs=18.8
Q ss_pred chHHHHHHHHhhcCCchHHHHHHH
Q 047767 621 AVYSQVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~A~~~~~ 644 (666)
.+...|+.++...|+.++|..+++
T Consensus 2 ~a~~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 2 RARLALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHh
Confidence 456778888888888888888765
No 306
>PF02259 FAT: FAT domain; InterPro: IPR003151 The FAT domain is a domain present in the PIK-related kinases. Members of the family of PIK-related kinases may act as intracellular sensors that govern radial and horizontal pathways [].; GO: 0005515 protein binding
Probab=90.98 E-value=8.3 Score=38.02 Aligned_cols=65 Identities=22% Similarity=0.241 Sum_probs=55.8
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC----CCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP----VDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p----~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
...+|..+...+.+.|.++.|...+.++....+ ..+.+...-+..+...|+..+|+..++...+.
T Consensus 145 ~~~~~l~~a~~aRk~g~~~~A~~~l~~~~~~~~~~~~~~~~v~~e~akllw~~g~~~~Ai~~L~~~~~~ 213 (352)
T PF02259_consen 145 LAETWLKFAKLARKAGNFQLALSALNRLFQLNPSSESLLPRVFLEYAKLLWAQGEQEEAIQKLRELLKC 213 (352)
T ss_pred HHHHHHHHHHHHHHCCCcHHHHHHHHHHhccCCcccCCCcchHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 557888999999999999999999999988652 24677788899999999999999999888773
No 307
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=90.93 E-value=2.6 Score=36.44 Aligned_cols=95 Identities=16% Similarity=0.079 Sum_probs=60.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCc------hH
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV--TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR------QH 556 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~------~~ 556 (666)
.+..+..-|++.|+.+.|++.+.++.+....|... .+..++..+...+++..+...+.++........|. ..
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk~ 117 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDYCTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLKV 117 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHHH
Confidence 45667777888888888888888877765555543 45666777777778888777777776541111111 11
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 557 YSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
|.. -.+...+++.+|-+.|-+..
T Consensus 118 ~~g--L~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 118 YEG--LANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHH--HHHHHhchHHHHHHHHHccC
Confidence 222 22345778888888876654
No 308
>PF13181 TPR_8: Tetratricopeptide repeat; PDB: 3GW4_B 3MA5_C 2KCV_A 2KCL_A 3FP3_A 3LCA_A 3FP4_A 3FP2_A 1W3B_B 1ELW_A ....
Probab=90.83 E-value=0.45 Score=27.54 Aligned_cols=29 Identities=24% Similarity=0.563 Sum_probs=26.0
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 621 AVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
.+|..++.+|...|++++|.+.|++..+.
T Consensus 2 ~~~~~lg~~y~~~~~~~~A~~~~~~a~~~ 30 (34)
T PF13181_consen 2 EAYYNLGKIYEQLGDYEEALEYFEKALEL 30 (34)
T ss_dssp HHHHHHHHHHHHTTSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 47889999999999999999999988753
No 309
>TIGR02561 HrpB1_HrpK type III secretion protein HrpB1/HrpK. This gene is found within type III secretion operons in a limited range of species including Xanthomonas, Ralstonia and Burkholderia.
Probab=90.66 E-value=6.6 Score=32.21 Aligned_cols=52 Identities=13% Similarity=0.139 Sum_probs=32.9
Q ss_pred CCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCC
Q 047767 530 HSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTPGGG 584 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 584 (666)
..++.+++..+++.+. -+.|+ ...-..-+..+...|+|.+|+.+|+++...+
T Consensus 22 ~~~d~~D~e~lLdALr---vLrP~~~e~d~~dg~l~i~rg~w~eA~rvlr~l~~~~ 74 (153)
T TIGR02561 22 RSADPYDAQAMLDALR---VLRPNLKELDMFDGWLLIARGNYDEAARILRELLSSA 74 (153)
T ss_pred hcCCHHHHHHHHHHHH---HhCCCccccchhHHHHHHHcCCHHHHHHHHHhhhccC
Confidence 3667777777777776 34565 2222223445667788888888888777444
No 310
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=90.33 E-value=0.4 Score=29.38 Aligned_cols=29 Identities=24% Similarity=0.465 Sum_probs=23.6
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 621 AVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
.++.+|+.+|...|++++|..++++..+.
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~~ 31 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALEI 31 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHHH
Confidence 46788999999999999999999887653
No 311
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=90.29 E-value=15 Score=33.93 Aligned_cols=57 Identities=11% Similarity=0.085 Sum_probs=51.9
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
.....|..+|.+.+|.++-++++.++|-+...+-.|...+...|+.-.|.+.++.+.
T Consensus 284 kva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya 340 (361)
T COG3947 284 KVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYA 340 (361)
T ss_pred HHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHH
Confidence 344568899999999999999999999999999999999999999999999998775
No 312
>PF13174 TPR_6: Tetratricopeptide repeat; PDB: 3QKY_A 2XEV_A 3URZ_B 2Q7F_A.
Probab=90.20 E-value=0.35 Score=27.71 Aligned_cols=28 Identities=11% Similarity=0.430 Sum_probs=25.3
Q ss_pred hHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 622 VYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 622 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
++..++.++...|++++|.+.|+++.+.
T Consensus 2 a~~~~a~~~~~~g~~~~A~~~~~~~~~~ 29 (33)
T PF13174_consen 2 ALYRLARCYYKLGDYDEAIEYFQRLIKR 29 (33)
T ss_dssp HHHHHHHHHHHHCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 5788999999999999999999998764
No 313
>PF13170 DUF4003: Protein of unknown function (DUF4003)
Probab=89.87 E-value=3.8 Score=38.85 Aligned_cols=125 Identities=17% Similarity=0.197 Sum_probs=64.0
Q ss_pred hhhHHHHHHHHHhCCCCCCcccHHHHHHHHHc--CC----ChHHHHHHHHHHHHhcCC---CchhhhhHHHHHhHhcCCh
Q 047767 91 PKQALYLYDEMVSHGIKESASTFSSVLSVCSN--AG----FYTEGIQIHCRVLSLGFG---LNLYIGSPLVDLYMRMGPS 161 (666)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~--~~----~~~~a~~~~~~~~~~~~~---~~~~~~~~ll~~~~~~g~~ 161 (666)
++..+.+++.|++.|.+-+..+|.+..-.... .. ....+..+++.|.+.-+- ++-..+..++.. ..++.
T Consensus 78 ~~~~~~~y~~L~~~gFk~~~y~~laA~~i~~~~~~~~~~~~~~ra~~iy~~mKk~H~fLTs~~D~~~a~lLA~--~~~~~ 155 (297)
T PF13170_consen 78 FKEVLDIYEKLKEAGFKRSEYLYLAALIILEEEEKEDYDEIIQRAKEIYKEMKKKHPFLTSPEDYPFAALLAM--TSEDV 155 (297)
T ss_pred HHHHHHHHHHHHHhccCccChHHHHHHHHHHhcccccHHHHHHHHHHHHHHHHHhCccccCccchhHHHHHhc--ccccH
Confidence 35567788999999988777777664433333 22 345677888888875432 222334444332 22332
Q ss_pred ----hHHHHhhccCCC-----CCcccHHHHHHHHHhc-CC--chHHHHHHHHHHHcCCCCCHhhHHHH
Q 047767 162 ----VRALDLFDELPE-----RNLATWNLMLRAFCEL-SR--PDEVLRMYNKMKAEGVEPNGLSFCYM 217 (666)
Q Consensus 162 ----~~a~~~~~~~~~-----~~~~~~~~li~~~~~~-~~--~~~a~~~~~~m~~~~~~p~~~t~~~l 217 (666)
+.++..|+.+.+ .|..-+-+-+-++... .. ...+.++++.+.+.|+++....|..+
T Consensus 156 e~l~~~~E~~Y~~L~~~~f~kgn~LQ~LS~iLaL~~~~~~~~v~r~~~l~~~l~~~~~kik~~~yp~l 223 (297)
T PF13170_consen 156 EELAERMEQCYQKLADAGFKKGNDLQFLSHILALSEGDDQEKVARVIELYNALKKNGVKIKYMHYPTL 223 (297)
T ss_pred HHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHHHhccccchHHHHHHHHHHHHHHHcCCccccccccHH
Confidence 233444443332 1221122222222211 11 33566677777777777666665544
No 314
>KOG1586 consensus Protein required for fusion of vesicles in vesicular transport, alpha-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.70 E-value=14 Score=32.86 Aligned_cols=91 Identities=11% Similarity=0.108 Sum_probs=48.8
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-c---hHHHHHHHHHHhcCChHHHHHHHHhCC---C-CC----CHHHHHHHHHHHHhh
Q 047767 532 GMVKEGQLVFNSMKSVYGIDAD-R---QHYSCMIDMLGRAGILDKAEELLQQTP---G-GG----DCMMWSSLLRSCRVH 599 (666)
Q Consensus 532 g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~---~-~~----~~~~~~~l~~~~~~~ 599 (666)
.+++.|+..|+..-+-+...-. . ..+-.....-...+++.+|+++|+++. . ++ ...-|..-...|.-.
T Consensus 128 ~d~ekaI~~YE~Aae~yk~ees~ssANKC~lKvA~yaa~leqY~~Ai~iyeqva~~s~~n~LLKys~KdyflkAgLChl~ 207 (288)
T KOG1586|consen 128 QDFEKAIAHYEQAAEYYKGEESVSSANKCLLKVAQYAAQLEQYSKAIDIYEQVARSSLDNNLLKYSAKDYFLKAGLCHLC 207 (288)
T ss_pred HHHHHHHHHHHHHHHHHcchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHhHHHHHHHHHHHHhHh
Confidence 4556666666655543322222 1 222233333456678888888888654 1 11 122222222223333
Q ss_pred -CChHHHHHHHHHHHhcCCCCcch
Q 047767 600 -GNEIIGRRVANILMELEPVDFAV 622 (666)
Q Consensus 600 -~~~~~a~~~~~~~~~~~p~~~~~ 622 (666)
.|.-.+...+++-.+.+|.-..+
T Consensus 208 ~~D~v~a~~ALeky~~~dP~F~ds 231 (288)
T KOG1586|consen 208 KADEVNAQRALEKYQELDPAFTDS 231 (288)
T ss_pred cccHHHHHHHHHHHHhcCCccccc
Confidence 67777888888888888874443
No 315
>PF07035 Mic1: Colon cancer-associated protein Mic1-like; InterPro: IPR009755 This entry represents the C terminus (approximately 160 residues) of a number of proteins that resemble colon cancer-associated protein Mic1.
Probab=89.34 E-value=12 Score=31.65 Aligned_cols=42 Identities=10% Similarity=0.152 Sum_probs=26.8
Q ss_pred HHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC
Q 047767 232 QLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274 (666)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 274 (666)
+.++.+.+.+ ++++...+..+++.+.+.|++.....++..-.
T Consensus 15 EYirSl~~~~-i~~~~~L~~lli~lLi~~~~~~~L~qllq~~V 56 (167)
T PF07035_consen 15 EYIRSLNQHN-IPVQHELYELLIDLLIRNGQFSQLHQLLQYHV 56 (167)
T ss_pred HHHHHHHHcC-CCCCHHHHHHHHHHHHHcCCHHHHHHHHhhcc
Confidence 3444555566 77777777777777777777666655554433
No 316
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=89.33 E-value=26 Score=35.27 Aligned_cols=177 Identities=8% Similarity=0.076 Sum_probs=114.9
Q ss_pred CCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047767 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526 (666)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 526 (666)
+.+....-+++..++....+.-.+.+-.+|.. .+-..|..++.+|..+ ..++-..+|+++.+ ..-|...+..-+.
T Consensus 63 ~l~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~e~kmal~el~q~y~en-~n~~l~~lWer~ve--~dfnDvv~~ReLa 139 (711)
T COG1747 63 LLDDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYGESKMALLELLQCYKEN-GNEQLYSLWERLVE--YDFNDVVIGRELA 139 (711)
T ss_pred cccchHHHHHHHHhccchHHHHHHHHHHHHHHhcchHHHHHHHHHHHHhc-CchhhHHHHHHHHH--hcchhHHHHHHHH
Confidence 34455556677777777777777777777763 5667788888888887 66778888888888 4445554444343
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCCC------chHHHHHHHHHHhcCChHHHHHHHHhCCCCC----CHHHHHHHHHHH
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDAD------RQHYSCMIDMLGRAGILDKAEELLQQTPGGG----DCMMWSSLLRSC 596 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~----~~~~~~~l~~~~ 596 (666)
.+...++...+..+|.++... +-|. .+.|..|...- ..+.+....+..++.... -...+..+..-|
T Consensus 140 ~~yEkik~sk~a~~f~Ka~yr--fI~~~q~~~i~evWeKL~~~i--~dD~D~fl~l~~kiqt~lg~~~~~Vl~qdv~~~Y 215 (711)
T COG1747 140 DKYEKIKKSKAAEFFGKALYR--FIPRRQNAAIKEVWEKLPELI--GDDKDFFLRLQKKIQTKLGEGRGSVLMQDVYKKY 215 (711)
T ss_pred HHHHHhchhhHHHHHHHHHHH--hcchhhhhhHHHHHHHHHHhc--cccHHHHHHHHHHHHHhhccchHHHHHHHHHHHh
Confidence 344447778888888887764 3332 23444444321 345666666666655221 233444444556
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 632 (666)
....|+++|++++.-+++.+..|..+.-.++..+..
T Consensus 216 s~~eN~~eai~Ilk~il~~d~k~~~ar~~~i~~lRd 251 (711)
T COG1747 216 SENENWTEAIRILKHILEHDEKDVWARKEIIENLRD 251 (711)
T ss_pred ccccCHHHHHHHHHHHhhhcchhhhHHHHHHHHHHH
Confidence 677889999999998888888777777777766654
No 317
>KOG4570 consensus Uncharacterized conserved protein [Function unknown]
Probab=89.19 E-value=4 Score=37.79 Aligned_cols=101 Identities=15% Similarity=0.149 Sum_probs=71.0
Q ss_pred cCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC-CC-----cccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhh
Q 047767 140 GFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE-RN-----LATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS 213 (666)
Q Consensus 140 ~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t 213 (666)
|.+....+...++..-....+++.+...+-.+.. |+ ..+-.+.++.+. .-++++++.++..=.+-|+-||..+
T Consensus 59 g~~~s~~~Vd~~V~v~~~~~~idd~~~~LyKlRhs~~a~~~~~~~~~~~irlll-ky~pq~~i~~l~npIqYGiF~dqf~ 137 (418)
T KOG4570|consen 59 GLPVSSLTVDRLVDVISSREEIDDAEYYLYKLRHSPNAWYLRNWTIHTWIRLLL-KYDPQKAIYTLVNPIQYGIFPDQFT 137 (418)
T ss_pred CCCcceeehhhhhhccccccchhHHHHHHHHHhcCcchhhhccccHHHHHHHHH-ccChHHHHHHHhCcchhccccchhh
Confidence 4444444555555555555667777766655543 21 122233444444 3477899999988888999999999
Q ss_pred HHHHHHHhcccCChHHHHHHHHHHHHhC
Q 047767 214 FCYMVRGCSIGMLLDEGKQLHSHVIKLG 241 (666)
Q Consensus 214 ~~~ll~~~~~~~~~~~a~~~~~~~~~~~ 241 (666)
++.+|..+.+.+++..|..+.-.|+...
T Consensus 138 ~c~l~D~flk~~n~~~aa~vvt~~~~qe 165 (418)
T KOG4570|consen 138 FCLLMDSFLKKENYKDAASVVTEVMMQE 165 (418)
T ss_pred HHHHHHHHHhcccHHHHHHHHHHHHHHH
Confidence 9999999999999999999988888775
No 318
>KOG4648 consensus Uncharacterized conserved protein, contains LRR repeats [Function unknown]
Probab=89.09 E-value=0.96 Score=42.12 Aligned_cols=88 Identities=11% Similarity=0.004 Sum_probs=72.7
Q ss_pred HHHHHhcCChHHHHHHHHh-CCCCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchH
Q 047767 561 IDMLGRAGILDKAEELLQQ-TPGGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638 (666)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~-~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 638 (666)
.+-|.++|++++|+..+.. |...| +..++..-..+|.+...+..|+.--+.++.++..-..+|..-+.+-...|+..+
T Consensus 104 GN~yFKQgKy~EAIDCYs~~ia~~P~NpV~~~NRA~AYlk~K~FA~AE~DC~~AiaLd~~Y~KAYSRR~~AR~~Lg~~~E 183 (536)
T KOG4648|consen 104 GNTYFKQGKYEEAIDCYSTAIAVYPHNPVYHINRALAYLKQKSFAQAEEDCEAAIALDKLYVKAYSRRMQARESLGNNME 183 (536)
T ss_pred hhhhhhccchhHHHHHhhhhhccCCCCccchhhHHHHHHHHHHHHHHHHhHHHHHHhhHHHHHHHHHHHHHHHHHhhHHH
Confidence 4568899999999999976 44566 888888889999999999999999999999887777778877877778888888
Q ss_pred HHHHHHHHHh
Q 047767 639 SMQIRETALA 648 (666)
Q Consensus 639 A~~~~~~~~~ 648 (666)
|.+-++...+
T Consensus 184 AKkD~E~vL~ 193 (536)
T KOG4648|consen 184 AKKDCETVLA 193 (536)
T ss_pred HHHhHHHHHh
Confidence 8877765543
No 319
>PRK09687 putative lyase; Provisional
Probab=88.94 E-value=21 Score=33.71 Aligned_cols=137 Identities=12% Similarity=0.004 Sum_probs=75.2
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC-cHHHHHHHHHHhHHhhCCCCCchHHHH
Q 047767 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG-MVKEGQLVFNSMKSVYGIDADRQHYSC 559 (666)
Q Consensus 481 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~p~~~~~~~ 559 (666)
++...-...+.++.+.++ .+++..+-.+.+ .+|...-...+.++.+.+ ....+...+-.+.. .++..+-..
T Consensus 140 ~~~~VR~~a~~aLg~~~~-~~ai~~L~~~L~---d~~~~VR~~A~~aLg~~~~~~~~~~~~L~~~L~----D~~~~VR~~ 211 (280)
T PRK09687 140 KSTNVRFAVAFALSVIND-EAAIPLLINLLK---DPNGDVRNWAAFALNSNKYDNPDIREAFVAMLQ----DKNEEIRIE 211 (280)
T ss_pred CCHHHHHHHHHHHhccCC-HHHHHHHHHHhc---CCCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhc----CCChHHHHH
Confidence 444444455555555554 345555555554 344444444444454432 13345555555543 355566666
Q ss_pred HHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 047767 560 MIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630 (666)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 630 (666)
-+.++.+.|+ .+|+..+-+....++. ....+.+....|+. +|+..++++.+.+| |+.+-....+++
T Consensus 212 A~~aLg~~~~-~~av~~Li~~L~~~~~--~~~a~~ALg~ig~~-~a~p~L~~l~~~~~-d~~v~~~a~~a~ 277 (280)
T PRK09687 212 AIIGLALRKD-KRVLSVLIKELKKGTV--GDLIIEAAGELGDK-TLLPVLDTLLYKFD-DNEIITKAIDKL 277 (280)
T ss_pred HHHHHHccCC-hhHHHHHHHHHcCCch--HHHHHHHHHhcCCH-hHHHHHHHHHhhCC-ChhHHHHHHHHH
Confidence 6777777776 4555555444434442 33455666666664 67888888887777 555555555554
No 320
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=88.93 E-value=1.2 Score=33.17 Aligned_cols=52 Identities=12% Similarity=-0.040 Sum_probs=26.3
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHhhcCCc
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD--FAVYSQVSNFYSEIGEF 636 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~ 636 (666)
|......+...+...|++++|++.+-.+++.+|.. ..+--.|+.++...|.-
T Consensus 21 D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~~dr~~~~~~ar~~ll~~f~~lg~~ 74 (90)
T PF14561_consen 21 DLDARYALADALLAAGDYEEALDQLLELVRRDRDYEDDAARKRLLDIFELLGPG 74 (90)
T ss_dssp -HHHHHHHHHHHHHTT-HHHHHHHHHHHHCC-TTCCCCHHHHHHHHHHHHH-TT
T ss_pred CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCccccccHHHHHHHHHHHHcCCC
Confidence 44455555555666666666666666666554432 44445555555555553
No 321
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=88.87 E-value=0.7 Score=38.47 Aligned_cols=79 Identities=14% Similarity=0.259 Sum_probs=37.3
Q ss_pred HHHHhHhcCCChhhHHHHhhcCC----CCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCC
Q 047767 49 RTIDDFVKSGHLNSAKKLFDEMP----ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124 (666)
Q Consensus 49 ~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 124 (666)
.+|+.+.+.+.++...+.++.+. ..+....+.++..|++.++++...++++. .+..-...+++.|.+.|
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~-------~~~yd~~~~~~~c~~~~ 84 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKT-------SNNYDLDKALRLCEKHG 84 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTS-------SSSS-CTHHHHHHHTTT
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHccc-------ccccCHHHHHHHHHhcc
Confidence 34555555555555555554443 12344555566666666555555555541 11122334455555555
Q ss_pred ChHHHHHHHH
Q 047767 125 FYTEGIQIHC 134 (666)
Q Consensus 125 ~~~~a~~~~~ 134 (666)
.++++.-++.
T Consensus 85 l~~~a~~Ly~ 94 (143)
T PF00637_consen 85 LYEEAVYLYS 94 (143)
T ss_dssp SHHHHHHHHH
T ss_pred hHHHHHHHHH
Confidence 5555444433
No 322
>KOG1258 consensus mRNA processing protein [RNA processing and modification]
Probab=88.85 E-value=31 Score=35.54 Aligned_cols=129 Identities=12% Similarity=0.144 Sum_probs=76.9
Q ss_pred CchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCccc-HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHH
Q 047767 74 DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST-FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLV 152 (666)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~-~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll 152 (666)
+...|..+|.---.....+.+..++..+... -|.... |......=.+.|..+.+.++|++.+. +++.+...|...+
T Consensus 44 ~f~~wt~li~~~~~~~~~~~~r~~y~~fL~k--yPl~~gyW~kfA~~E~klg~~~~s~~Vfergv~-aip~SvdlW~~Y~ 120 (577)
T KOG1258|consen 44 DFDAWTTLIQENDSIEDVDALREVYDIFLSK--YPLCYGYWKKFADYEYKLGNAENSVKVFERGVQ-AIPLSVDLWLSYL 120 (577)
T ss_pred cccchHHHHhccCchhHHHHHHHHHHHHHhh--CccHHHHHHHHHHHHHHhhhHHHHHHHHHHHHH-hhhhHHHHHHHHH
Confidence 3445666665544555556666677776643 243332 22333333456777778888877765 3455666665555
Q ss_pred HHhH-hcCChhHHHHhhccCCC------CCcccHHHHHHHHHhcCCchHHHHHHHHHHHc
Q 047767 153 DLYM-RMGPSVRALDLFDELPE------RNLATWNLMLRAFCELSRPDEVLRMYNKMKAE 205 (666)
Q Consensus 153 ~~~~-~~g~~~~a~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 205 (666)
..+. ..|+.+...+.|+.... .....|...|.--...+++.....+|++..+.
T Consensus 121 ~f~~n~~~d~~~lr~~fe~A~~~vG~dF~S~~lWdkyie~en~qks~k~v~~iyeRilei 180 (577)
T KOG1258|consen 121 AFLKNNNGDPETLRDLFERAKSYVGLDFLSDPLWDKYIEFENGQKSWKRVANIYERILEI 180 (577)
T ss_pred HHHhccCCCHHHHHHHHHHHHHhcccchhccHHHHHHHHHHhccccHHHHHHHHHHHHhh
Confidence 4433 33666666666665543 23445777777666777788888888887764
No 323
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=88.76 E-value=8.5 Score=39.27 Aligned_cols=101 Identities=14% Similarity=0.060 Sum_probs=65.1
Q ss_pred HhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHH
Q 047767 463 SRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542 (666)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 542 (666)
.+.|+++.|.++..+. .+..-|..|.++..+.+++..|.+.|....+ |..|+-.+...|+-+....+-.
T Consensus 648 l~lgrl~iA~~la~e~--~s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la~ 716 (794)
T KOG0276|consen 648 LKLGRLDIAFDLAVEA--NSEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLAS 716 (794)
T ss_pred hhcCcHHHHHHHHHhh--cchHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHHH
Confidence 3457777777665543 3556688888888888888888888877655 4456666666666655555544
Q ss_pred HhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 543 SMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 543 ~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
...+. |. .|.-.-+|...|+++++.+++.+-.
T Consensus 717 ~~~~~-g~------~N~AF~~~~l~g~~~~C~~lLi~t~ 748 (794)
T KOG0276|consen 717 LAKKQ-GK------NNLAFLAYFLSGDYEECLELLISTQ 748 (794)
T ss_pred HHHhh-cc------cchHHHHHHHcCCHHHHHHHHHhcC
Confidence 44443 32 2333445667788888888776544
No 324
>PF13374 TPR_10: Tetratricopeptide repeat; PDB: 3CEQ_B 3EDT_H 3NF1_A.
Probab=88.40 E-value=1.1 Score=27.35 Aligned_cols=28 Identities=14% Similarity=0.124 Sum_probs=19.0
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
.+++.+...|...|++++|+.+++++++
T Consensus 3 ~~~~~la~~~~~~g~~~~A~~~~~~al~ 30 (42)
T PF13374_consen 3 SALNNLANAYRAQGRYEEALELLEEALE 30 (42)
T ss_dssp HHHHHHHHHHHHCT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhhcchhhHHHHHHHH
Confidence 4566677777777777777777777665
No 325
>COG3629 DnrI DNA-binding transcriptional activator of the SARP family [Signal transduction mechanisms]
Probab=88.19 E-value=4.3 Score=37.63 Aligned_cols=78 Identities=15% Similarity=0.242 Sum_probs=49.3
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHH----hhCCCCCchHHHHH
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS----VYGIDADRQHYSCM 560 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~l 560 (666)
++..++..+...|+++.+.+.++++.... +-|...|..++.+|.+.|+...|+..|+.+.+ ..|+.|...+...+
T Consensus 155 ~l~~lae~~~~~~~~~~~~~~l~~Li~~d-p~~E~~~~~lm~~y~~~g~~~~ai~~y~~l~~~~~edlgi~P~~~~~~~y 233 (280)
T COG3629 155 ALTKLAEALIACGRADAVIEHLERLIELD-PYDEPAYLRLMEAYLVNGRQSAAIRAYRQLKKTLAEELGIDPAPELRALY 233 (280)
T ss_pred HHHHHHHHHHhcccHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCchHHHHHHHHHHHHhhhhcCCCccHHHHHHH
Confidence 45556666666777777777777777632 23555677777777777777777776666554 23666666655554
Q ss_pred HHH
Q 047767 561 IDM 563 (666)
Q Consensus 561 ~~~ 563 (666)
.+.
T Consensus 234 ~~~ 236 (280)
T COG3629 234 EEI 236 (280)
T ss_pred HHH
Confidence 444
No 326
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=87.99 E-value=1.6 Score=43.97 Aligned_cols=101 Identities=11% Similarity=-0.016 Sum_probs=76.2
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDAD--RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEI 603 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~ 603 (666)
..-.|+...|...+..... ..|- ......|.+.+.+.|...+|-.++.... ....+.++..+++++....+++
T Consensus 617 wr~~gn~~~a~~cl~~a~~---~~p~~~~v~~v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~ 693 (886)
T KOG4507|consen 617 WRAVGNSTFAIACLQRALN---LAPLQQDVPLVNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNIS 693 (886)
T ss_pred eeecCCcHHHHHHHHHHhc---cChhhhcccHHHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhH
Confidence 4567888888888877763 3444 4445567888888888888888876543 2335567777888888889999
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 604 IGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 604 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
.|++.++.+++++|+++.+-..|..+-+
T Consensus 694 ~a~~~~~~a~~~~~~~~~~~~~l~~i~c 721 (886)
T KOG4507|consen 694 GALEAFRQALKLTTKCPECENSLKLIRC 721 (886)
T ss_pred HHHHHHHHHHhcCCCChhhHHHHHHHHH
Confidence 9999999999999999888887766555
No 327
>KOG1585 consensus Protein required for fusion of vesicles in vesicular transport, gamma-SNAP [Intracellular trafficking, secretion, and vesicular transport]
Probab=87.80 E-value=8.1 Score=34.59 Aligned_cols=54 Identities=6% Similarity=-0.202 Sum_probs=24.2
Q ss_pred HHHHHhhCChHHHHHHHHHHHhcCCCC---cch---HHHHHHHHhhcCCchHHHHHHHHH
Q 047767 593 LRSCRVHGNEIIGRRVANILMELEPVD---FAV---YSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~---~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
.+.+.+...+++|-..+.+-....-.- +.. +..++-+|....++..|...++.-
T Consensus 157 sr~lVrl~kf~Eaa~a~lKe~~~~~~~~~y~~~~k~~va~ilv~L~~~Dyv~aekc~r~~ 216 (308)
T KOG1585|consen 157 SRVLVRLEKFTEAATAFLKEGVAADKCDAYNSQCKAYVAAILVYLYAHDYVQAEKCYRDC 216 (308)
T ss_pred hhHhhhhHHhhHHHHHHHHhhhHHHHHhhcccHHHHHHHHHHHHhhHHHHHHHHHHhcch
Confidence 344555555555555544422222211 001 333444445555666666665543
No 328
>PF13431 TPR_17: Tetratricopeptide repeat
Probab=87.74 E-value=0.76 Score=26.73 Aligned_cols=31 Identities=29% Similarity=0.298 Sum_probs=20.4
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHccCChHHHH
Q 047767 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 267 (666)
++.++.. |.+...|+.+...|...|++++|+
T Consensus 3 ~kAie~~--P~n~~a~~nla~~~~~~g~~~~A~ 33 (34)
T PF13431_consen 3 KKAIELN--PNNAEAYNNLANLYLNQGDYEEAI 33 (34)
T ss_pred HHHHHHC--CCCHHHHHHHHHHHHHCcCHHhhc
Confidence 3444443 666777777777777777777764
No 329
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=87.46 E-value=1.6 Score=28.51 Aligned_cols=33 Identities=24% Similarity=0.220 Sum_probs=26.0
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchH
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 623 (666)
.+..++.+.|++++|.+..+.+++.+|+|..+-
T Consensus 6 ~lAig~ykl~~Y~~A~~~~~~lL~~eP~N~Qa~ 38 (53)
T PF14853_consen 6 YLAIGHYKLGEYEKARRYCDALLEIEPDNRQAQ 38 (53)
T ss_dssp HHHHHHHHTT-HHHHHHHHHHHHHHTTS-HHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhhCCCcHHHH
Confidence 456678899999999999999999999885443
No 330
>PRK09687 putative lyase; Provisional
Probab=87.41 E-value=26 Score=33.06 Aligned_cols=23 Identities=17% Similarity=0.264 Sum_probs=11.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHH
Q 047767 488 SIMNGYSRNGMGREALDMLEVMIQ 511 (666)
Q Consensus 488 ~li~~~~~~~~~~~a~~~~~~m~~ 511 (666)
..+.++...|+. +|+..+.++.+
T Consensus 240 ~a~~ALg~ig~~-~a~p~L~~l~~ 262 (280)
T PRK09687 240 LIIEAAGELGDK-TLLPVLDTLLY 262 (280)
T ss_pred HHHHHHHhcCCH-hHHHHHHHHHh
Confidence 344455555553 45555555554
No 331
>PRK10941 hypothetical protein; Provisional
Probab=87.16 E-value=3.7 Score=38.17 Aligned_cols=62 Identities=11% Similarity=0.091 Sum_probs=42.5
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+.+-.+|.+.++++.|+++.+.++...|+++.-+...|-+|.+.|.+..|..=++...+...
T Consensus 185 ~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P 246 (269)
T PRK10941 185 DTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCP 246 (269)
T ss_pred HHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCC
Confidence 34445566777777777777777777777777777777777777777777776666655443
No 332
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=87.13 E-value=83 Score=38.57 Aligned_cols=67 Identities=10% Similarity=0.084 Sum_probs=58.6
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCc
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 653 (666)
-..+|....+..+..|.++.|...+-.+.+..+ +.++.-.+..+...|+...|+.++++..+.....
T Consensus 1669 ~ge~wLqsAriaR~aG~~q~A~nall~A~e~r~--~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~ 1735 (2382)
T KOG0890|consen 1669 LGECWLQSARIARLAGHLQRAQNALLNAKESRL--PEIVLERAKLLWQTGDELNALSVLQEILSKNFPD 1735 (2382)
T ss_pred hHHHHHHHHHHHHhcccHHHHHHHHHhhhhccc--chHHHHHHHHHHhhccHHHHHHHHHHHHHhhccc
Confidence 356899999999999999999999988888875 4789999999999999999999999988765543
No 333
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=87.01 E-value=2.6 Score=37.36 Aligned_cols=83 Identities=8% Similarity=-0.097 Sum_probs=35.7
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHHHHHhcCChHHHHHHHHhC-CCCCCHH-HHHHHHHHHHhhCChHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILDKAEELLQQT-PGGGDCM-MWSSLLRSCRVHGNEII 604 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~-~~~~~~~-~~~~l~~~~~~~~~~~~ 604 (666)
|....+++.|+..|.+.. .+.|+. .-|..=+.++.+..+++.+..-..+. ...|+.. ..-.+.........+++
T Consensus 20 ~f~~k~y~~ai~~y~raI---~~nP~~~~Y~tnralchlk~~~~~~v~~dcrralql~~N~vk~h~flg~~~l~s~~~~e 96 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAI---CINPTVASYYTNRALCHLKLKHWEPVEEDCRRALQLDPNLVKAHYFLGQWLLQSKGYDE 96 (284)
T ss_pred ccchhhhchHHHHHHHHH---hcCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHHhcChHHHHHHHHHHHHHHhhccccH
Confidence 444455555555554444 345554 22333444444555554444333322 2333322 22222223333444555
Q ss_pred HHHHHHHHH
Q 047767 605 GRRVANILM 613 (666)
Q Consensus 605 a~~~~~~~~ 613 (666)
|+..++++.
T Consensus 97 aI~~Lqra~ 105 (284)
T KOG4642|consen 97 AIKVLQRAY 105 (284)
T ss_pred HHHHHHHHH
Confidence 555555543
No 334
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=86.84 E-value=1.4 Score=24.47 Aligned_cols=24 Identities=21% Similarity=0.509 Sum_probs=11.3
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHH
Q 047767 623 YSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 623 ~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
+..++.++...|++++|...++..
T Consensus 4 ~~~~a~~~~~~~~~~~a~~~~~~~ 27 (34)
T smart00028 4 LYNLGNAYLKLGDYDEALEYYEKA 27 (34)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHH
Confidence 444444444444444444444433
No 335
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=86.35 E-value=8.5 Score=34.85 Aligned_cols=121 Identities=15% Similarity=0.111 Sum_probs=72.1
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhCC--------CCCCHHHHHHHHHHHHhhCC
Q 047767 532 GMVKEGQLVFNSMKSVYGIDAD--RQHYSCMIDMLGRAGILDKAEELLQQTP--------GGGDCMMWSSLLRSCRVHGN 601 (666)
Q Consensus 532 g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~~l~~~~~~~~~ 601 (666)
..+++|+.-|++..+..|-+-+ ......++..+.+.|++++..+.+.++. .+-...+.++++.--....+
T Consensus 41 ~~p~~Al~sF~kVlelEgEKgeWGFKALKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDyiStS~~ 120 (440)
T KOG1464|consen 41 DEPKEALSSFQKVLELEGEKGEWGFKALKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDYISTSKN 120 (440)
T ss_pred cCHHHHHHHHHHHHhcccccchhHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHhhhhh
Confidence 3556666666665543111111 3334455666677777777666665543 22245566666666556666
Q ss_pred hHHHHHHHHHHHh--cCCCCcchH----HHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 602 EIIGRRVANILME--LEPVDFAVY----SQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 602 ~~~a~~~~~~~~~--~~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
.+.-.++|+..++ .+..+...| ..|+.+|...|.+.+-.+++++++.....
T Consensus 121 m~LLQ~FYeTTL~ALkdAKNeRLWFKTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~ 177 (440)
T KOG1464|consen 121 MDLLQEFYETTLDALKDAKNERLWFKTNTKLGKLYFDRGEYTKLQKILKQLHQSCQT 177 (440)
T ss_pred hHHHHHHHHHHHHHHHhhhcceeeeeccchHhhhheeHHHHHHHHHHHHHHHHHhcc
Confidence 6666666665544 122222333 46899999999999999999888765443
No 336
>PF10602 RPN7: 26S proteasome subunit RPN7; InterPro: IPR019585 This entry represents the regulatory subunit RPN7 (known as the non-ATPase regulatory subunit 6 in higher eukaryotes) of the 26S proteasome. This entry also matches the evolutionarily related subunit 1 of the COP9 signalosome complex (CSN) from Arabidopsis []. The 26S proteasome plays a major role in ATP-dependent degradation of ubiquitinated proteins. Substrate specificity is conferred by the regulatory particle (RP), which can dissociate into stable lid and base subcomplexes. The regulatory subunit RPN7 is one of the lid subunits of the 26S proteasome and has been shown in Saccharomyces cerevisiae (Baker's yeast) to be required for structural integrity []. The COP9 signalosome is a conserved protein complex composed of eight subunits, where Individual subunits of the complex have been linked to various signal transduction pathways leading to gene expression and cell cycle control []. The overall organisation and the amino acid sequences of the COP9 signalosome subunits resemble the lid subcomplex of the 19 S regulatory particle for the 26 S proteasome []. COP9 subunit 1 (CSN1 or GPS1) of the COP9 complex is an essential subunit of the complex with regard to both structural integrity and functionality. The N-terminal region of subunit 1 (CSN1-N) can inhibit c-fos expression from either a transfected template or a chromosomal transgene (fos-lacZ), and may contain the activity domain that confers most of the repression functions of CSN1. The C-terminal region of subunit 1 (CSN1-C) allows integration of the protein into the COP9 signalosome.
Probab=85.98 E-value=7.8 Score=33.51 Aligned_cols=93 Identities=8% Similarity=-0.004 Sum_probs=59.4
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC--chHHHHHHHHHHhcCChHHHHHHHHhCC---CCC-CHHHHH--H
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD--RQHYSCMIDMLGRAGILDKAEELLQQTP---GGG-DCMMWS--S 591 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~-~~~~~~--~ 591 (666)
.+..+..-|.+.|+.+.|.+.|.++.+. ...|. ...+-.+++...-.|++..+...+.++. ..+ |...-+ .
T Consensus 38 ~~~~l~~~~~~~Gd~~~A~k~y~~~~~~-~~~~~~~id~~l~~irv~i~~~d~~~v~~~i~ka~~~~~~~~d~~~~nrlk 116 (177)
T PF10602_consen 38 ALEDLADHYCKIGDLEEALKAYSRARDY-CTSPGHKIDMCLNVIRVAIFFGDWSHVEKYIEKAESLIEKGGDWERRNRLK 116 (177)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhhh-cCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhccchHHHHHHHH
Confidence 5677777888888888888888887765 55555 5666777888888888888887776554 222 222111 1
Q ss_pred HHH--HHHhhCChHHHHHHHHHHH
Q 047767 592 LLR--SCRVHGNEIIGRRVANILM 613 (666)
Q Consensus 592 l~~--~~~~~~~~~~a~~~~~~~~ 613 (666)
... .+...+++..|-+.|-...
T Consensus 117 ~~~gL~~l~~r~f~~AA~~fl~~~ 140 (177)
T PF10602_consen 117 VYEGLANLAQRDFKEAAELFLDSL 140 (177)
T ss_pred HHHHHHHHHhchHHHHHHHHHccC
Confidence 111 2345567777666655443
No 337
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=85.74 E-value=0.56 Score=43.78 Aligned_cols=85 Identities=12% Similarity=-0.017 Sum_probs=43.9
Q ss_pred CCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCH-HHHHHHHHHHHhhCChHHHH
Q 047767 530 HSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDC-MMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~-~~~~~l~~~~~~~~~~~~a~ 606 (666)
..|.++.|++.+...+.. .|+ ...|..-..++.+.+++..|+.=+.... ++||. ..|..-..+-+..|++++|-
T Consensus 126 n~G~~~~ai~~~t~ai~l---np~~a~l~~kr~sv~lkl~kp~~airD~d~A~ein~Dsa~~ykfrg~A~rllg~~e~aa 202 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIEL---NPPLAILYAKRASVFLKLKKPNAAIRDCDFAIEINPDSAKGYKFRGYAERLLGNWEEAA 202 (377)
T ss_pred cCcchhhhhccccccccc---CCchhhhcccccceeeeccCCchhhhhhhhhhccCcccccccchhhHHHHHhhchHHHH
Confidence 445566666666655532 333 3444444455556666666665554332 34432 23444444445556666666
Q ss_pred HHHHHHHhcCC
Q 047767 607 RVANILMELEP 617 (666)
Q Consensus 607 ~~~~~~~~~~p 617 (666)
..+..+.+++-
T Consensus 203 ~dl~~a~kld~ 213 (377)
T KOG1308|consen 203 HDLALACKLDY 213 (377)
T ss_pred HHHHHHHhccc
Confidence 66666665543
No 338
>PF08631 SPO22: Meiosis protein SPO22/ZIP4 like; InterPro: IPR013940 SPO22 is a meiosis-specific protein with similarity to phospholipase A2, involved in completion of nuclear divisions during meiosis; induced early in meiosis []. It is also involved in sporulation [].
Probab=85.15 E-value=35 Score=32.29 Aligned_cols=17 Identities=18% Similarity=0.384 Sum_probs=11.9
Q ss_pred HHHhcCChhHHHHHHHH
Q 047767 389 SLLHSGNIKDAVEMFGF 405 (666)
Q Consensus 389 ~~~~~~~~~~a~~~~~~ 405 (666)
.+.+.++++.|.+.|+-
T Consensus 255 ~~~~~k~y~~A~~w~~~ 271 (278)
T PF08631_consen 255 KHYKAKNYDEAIEWYEL 271 (278)
T ss_pred HHHhhcCHHHHHHHHHH
Confidence 44567778888887764
No 339
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=84.90 E-value=37 Score=32.38 Aligned_cols=116 Identities=10% Similarity=-0.114 Sum_probs=60.3
Q ss_pred cHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcC-------ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCC
Q 047767 533 MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG-------ILDKAEELLQQTPGGGDCMMWSSLLRSCRV----HGN 601 (666)
Q Consensus 533 ~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-------~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~ 601 (666)
+..+|..+++++.+. |..+-......+...|...+ +...|...+.++....+......+...|.. ..|
T Consensus 128 d~~~A~~~~~~Aa~~-g~~~a~~~~~~l~~~~~~g~~~~~~~~~~~~A~~~~~~aa~~~~~~a~~~lg~~y~~G~Gv~~d 206 (292)
T COG0790 128 DLVKALKYYEKAAKL-GNVEAALAMYRLGLAYLSGLQALAVAYDDKKALYLYRKAAELGNPDAQLLLGRMYEKGLGVPRD 206 (292)
T ss_pred CHHHHHHHHHHHHHc-CChhHHHHHHHHHHHHHcChhhhcccHHHHhHHHHHHHHHHhcCHHHHHHHHHHHHcCCCCCcC
Confidence 555566666655554 43332222333333333321 123566666655544444444444444322 236
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC---------------CchHHHHHHHHHHhCCCC
Q 047767 602 EIIGRRVANILMELEPVDFAVYSQVSNFYSEIG---------------EFEVSMQIRETALARKLT 652 (666)
Q Consensus 602 ~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g---------------~~~~A~~~~~~~~~~~~~ 652 (666)
.++|...|+++.+... ......++ .+...| +...|...++.....|..
T Consensus 207 ~~~A~~wy~~Aa~~g~--~~a~~~~~-~~~~~g~g~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 269 (292)
T COG0790 207 LKKAFRWYKKAAEQGD--GAACYNLG-LMYLNGEGVKKAAFLTAAKEEDKKQALEWLQKACELGFD 269 (292)
T ss_pred HHHHHHHHHHHHHCCC--HHHHHHHH-HHHhcCCCchhhhhcccccCCCHHHHHHHHHHHHHcCCh
Confidence 7777777777777665 44555555 444444 666677777766655544
No 340
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=84.48 E-value=1.9 Score=26.90 Aligned_cols=27 Identities=19% Similarity=0.382 Sum_probs=21.0
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 624 SQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 624 ~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
..|+.+|...|+.+.|.+++++..+.|
T Consensus 3 LdLA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 3 LDLARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred hHHHHHHHHcCChHHHHHHHHHHHHcC
Confidence 467888888888888888888777543
No 341
>PF00637 Clathrin: Region in Clathrin and VPS; InterPro: IPR000547 Proteins synthesized on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. These vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transport []. Clathrin coats contain both clathrin (acts as a scaffold) and adaptor complexes that link clathrin to receptors in coated vesicles. Clathrin-associated protein complexes are believed to interact with the cytoplasmic tails of membrane proteins, leading to their selection and concentration. The two major types of clathrin adaptor complexes are the heterotetrameric adaptor protein (AP) complexes, and the monomeric GGA (Golgi-localising, Gamma-adaptin ear domain homology, ARF-binding proteins) adaptors [, ]. Clathrin is a trimer composed of three heavy chains and three light chains, each monomer projecting outwards like a leg; this three-legged structure is known as a triskelion [, ]. The heavy chains form the legs, their N-terminal beta-propeller regions extending outwards, while their C-terminal alpha-alpha-superhelical regions form the central hub of the triskelion. Peptide motifs can bind between the beta-propeller blades. The light chains appear to have a regulatory role, and may help orient the assembly and disassembly of clathrin coats as they interact with hsc70 uncoating ATPase []. Clathrin triskelia self-polymerise into a curved lattice by twisting individual legs together. The clathrin lattice forms around a vesicle as it buds from the TGN, plasma membrane or endosomes, acting to stabilise the vesicle and facilitate the budding process []. The multiple blades created when the triskelia polymerise are involved in multiple protein interactions, enabling the recruitment of different cargo adaptors and membrane attachment proteins []. This entry represents the 7-fold alpha-alpha-superhelical ARM-type repeat found at the C-terminal of clathrin heavy chains and in VPS (vacuolar protein sorting-associated) proteins. In clathrin heavy chains, the C-terminal 7-fold ARM-type repeats interact to form the central hub of the triskelion. VPS proteins are required for vacuolar assembly and vacuolar traffick, and contain one clathrin-type repeat []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0006886 intracellular protein transport, 0016192 vesicle-mediated transport; PDB: 3LVH_A 3LVG_C 1B89_A 3QIL_L.
Probab=83.95 E-value=0.77 Score=38.21 Aligned_cols=86 Identities=17% Similarity=0.205 Sum_probs=52.1
Q ss_pred HHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchH
Q 047767 115 SVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDE 194 (666)
Q Consensus 115 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~ 194 (666)
.+++.+.+.+.......+++.+...+...+....+.++..|++.++.++..++++.... .-...++..|.+.|.++.
T Consensus 12 ~vi~~~~~~~~~~~l~~yLe~~~~~~~~~~~~~~~~L~~ly~~~~~~~~l~~~L~~~~~---yd~~~~~~~c~~~~l~~~ 88 (143)
T PF00637_consen 12 EVISAFEERNQPEELIEYLEALVKENKENNPDLHTLLLELYIKYDPYEKLLEFLKTSNN---YDLDKALRLCEKHGLYEE 88 (143)
T ss_dssp CCHHHCTTTT-GGGCTCCHHHHHHTSTC-SHHHHHHHHHHHHCTTTCCHHHHTTTSSSS---S-CTHHHHHHHTTTSHHH
T ss_pred HHHHHHHhCCCHHHHHHHHHHHHhcccccCHHHHHHHHHHHHhcCCchHHHHHcccccc---cCHHHHHHHHHhcchHHH
Confidence 34555556666666767777777665555666777777777777776777777763332 333455666666666666
Q ss_pred HHHHHHHHH
Q 047767 195 VLRMYNKMK 203 (666)
Q Consensus 195 a~~~~~~m~ 203 (666)
+.-++.++.
T Consensus 89 a~~Ly~~~~ 97 (143)
T PF00637_consen 89 AVYLYSKLG 97 (143)
T ss_dssp HHHHHHCCT
T ss_pred HHHHHHHcc
Confidence 666655543
No 342
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=83.27 E-value=60 Score=34.36 Aligned_cols=152 Identities=13% Similarity=0.083 Sum_probs=95.5
Q ss_pred HHHcCChhHHHHHHHHHHH-------cCCCCCHHHHHHHHHHhcCC----C-cHHHHHHHHHHhHHhhCCCCCchHHHHH
Q 047767 493 YSRNGMGREALDMLEVMIQ-------RGLIPDKVTFLCVLAGCNHS----G-MVKEGQLVFNSMKSVYGIDADRQHYSCM 560 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~-------~g~~p~~~~~~~l~~~~~~~----g-~~~~a~~~~~~~~~~~~~~p~~~~~~~l 560 (666)
+...+|.+.|+.+++.+.+ .|..+ ....+..+|.+. . +.+.|..++....+. | .|+.. -.|
T Consensus 259 ~g~~~d~e~a~~~l~~aa~~~~~~a~~~~~~---a~~~lg~~Y~~g~~~~~~d~~~A~~~~~~aA~~-g-~~~a~--~~l 331 (552)
T KOG1550|consen 259 YGVTQDLESAIEYLKLAAESFKKAATKGLPP---AQYGLGRLYLQGLGVEKIDYEKALKLYTKAAEL-G-NPDAQ--YLL 331 (552)
T ss_pred ccccccHHHHHHHHHHHHHHHHHHHhhcCCc---cccHHHHHHhcCCCCccccHHHHHHHHHHHHhc-C-CchHH--HHH
Confidence 3345677888888877766 55222 344444455442 2 677788888888765 3 23332 233
Q ss_pred HHHHHhc---CChHHHHHHHHhCCCCCCHHHHHHHHHHHH----hhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc
Q 047767 561 IDMLGRA---GILDKAEELLQQTPGGGDCMMWSSLLRSCR----VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633 (666)
Q Consensus 561 ~~~~~~~---g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 633 (666)
..+|... .+...|.++|...-..+.....-.+...|. ...+.+.|...++++.+..+ +.+...++..+...
T Consensus 332 g~~~~~g~~~~d~~~A~~yy~~Aa~~G~~~A~~~la~~y~~G~gv~r~~~~A~~~~k~aA~~g~--~~A~~~~~~~~~~g 409 (552)
T KOG1550|consen 332 GVLYETGTKERDYRRAFEYYSLAAKAGHILAIYRLALCYELGLGVERNLELAFAYYKKAAEKGN--PSAAYLLGAFYEYG 409 (552)
T ss_pred HHHHHcCCccccHHHHHHHHHHHHHcCChHHHHHHHHHHHhCCCcCCCHHHHHHHHHHHHHccC--hhhHHHHHHHHHHc
Confidence 4444333 357889999988776665554444443332 23488899999999999883 34555555555433
Q ss_pred -CCchHHHHHHHHHHhCCCCc
Q 047767 634 -GEFEVSMQIRETALARKLTR 653 (666)
Q Consensus 634 -g~~~~A~~~~~~~~~~~~~~ 653 (666)
++++.+.-.+..+.+.|.+.
T Consensus 410 ~~~~~~~~~~~~~~a~~g~~~ 430 (552)
T KOG1550|consen 410 VGRYDTALALYLYLAELGYEV 430 (552)
T ss_pred cccccHHHHHHHHHHHhhhhH
Confidence 88888888888777766643
No 343
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=83.02 E-value=6.5 Score=29.67 Aligned_cols=60 Identities=15% Similarity=0.297 Sum_probs=38.5
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHH
Q 047767 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 562 (666)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++++.++.+-+ +....|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K~~--~~~~~Y~~~lq 87 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDKCG--NKKEIYPYILQ 87 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHHTT--T-TTHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--ChHHHHHHHHH
Confidence 3445555666666788888888888888888888888888888877633 33336766654
No 344
>smart00028 TPR Tetratricopeptide repeats. Repeats present in 4 or more copies in proteins. Contain a minimum of 34 amino acids each and self-associate via a "knobs and holes" mechanism.
Probab=83.00 E-value=2 Score=23.69 Aligned_cols=32 Identities=16% Similarity=0.017 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
..|..+...+...|+++.|...++++++..|.
T Consensus 2 ~~~~~~a~~~~~~~~~~~a~~~~~~~~~~~~~ 33 (34)
T smart00028 2 EALYNLGNAYLKLGDYDEALEYYEKALELDPN 33 (34)
T ss_pred hHHHHHHHHHHHHhhHHHHHHHHHHHHccCCC
Confidence 35677888889999999999999999988773
No 345
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=83.00 E-value=6.4 Score=35.27 Aligned_cols=66 Identities=14% Similarity=0.181 Sum_probs=42.8
Q ss_pred HHHHHHHHHHhhCChH-------HHHHHHHHHHhcC--CC----CcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCc
Q 047767 588 MWSSLLRSCRVHGNEI-------IGRRVANILMELE--PV----DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~-------~a~~~~~~~~~~~--p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 653 (666)
.+..+.+.|...|+.+ .|.+.|+++.+.. |. +....+.+|.+..+.|++++|.+.|.++...+-..
T Consensus 120 l~LrlAWlyR~~~~~~~E~~fl~~Al~~y~~a~~~e~~~~~~~~~~~l~YLigeL~rrlg~~~eA~~~fs~vi~~~~~s 198 (214)
T PF09986_consen 120 LCLRLAWLYRDLGDEENEKRFLRKALEFYEEAYENEDFPIEGMDEATLLYLIGELNRRLGNYDEAKRWFSRVIGSKKAS 198 (214)
T ss_pred HHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHHhCcCCCCCchHHHHHHHHHHHHHHhCCHHHHHHHHHHHHcCCCCC
Confidence 4444555566666644 4455555555433 22 24567788999999999999999999887655433
No 346
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=82.95 E-value=8.3 Score=28.78 Aligned_cols=47 Identities=13% Similarity=0.077 Sum_probs=36.0
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 047767 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240 (666)
Q Consensus 194 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 240 (666)
++.+-++.+....+.|++......+++|.+.+++..|..+++.+..+
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K 71 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDK 71 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 45555666666678888888888888888888888888888877744
No 347
>PF07721 TPR_4: Tetratricopeptide repeat; InterPro: IPR011717 This entry includes tetratricopeptide-like repeats not detected by the IPR001440 from INTERPRO, IPR013105 from INTERPRO and IPR011716 from INTERPRO models. The tetratricopeptide repeat (TPR) motif is a protein-protein interaction module found in multiple copies in a number of functionally different proteins that facilitates specific interactions with a partner protein(s) [].; GO: 0042802 identical protein binding
Probab=82.35 E-value=2.8 Score=22.47 Aligned_cols=21 Identities=33% Similarity=0.327 Sum_probs=11.0
Q ss_pred HHHHHHHHhcCChHHHHHHHH
Q 047767 558 SCMIDMLGRAGILDKAEELLQ 578 (666)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~ 578 (666)
..+...+...|++++|..+++
T Consensus 5 ~~la~~~~~~G~~~eA~~~l~ 25 (26)
T PF07721_consen 5 LALARALLAQGDPDEAERLLR 25 (26)
T ss_pred HHHHHHHHHcCCHHHHHHHHh
Confidence 344555555555555555543
No 348
>cd00923 Cyt_c_Oxidase_Va Cytochrome c oxidase subunit Va. Cytochrome c oxidase (CcO), the terminal oxidase in the respiratory chains of eukaryotes and most bacteria, is a multi-chain transmembrane protein located in the inner membrane of mitochondria and the cell membrane of prokaryotes. It catalyzes the reduction of O2 and simultaneously pumps protons across the membrane. The number of subunits varies from three to five in bacteria and up to 13 in mammalian mitochondria. Subunits I, II, and III of mammalian CcO are encoded within the mitochondrial genome and the remaining 10 subunits are encoded within the nuclear genome. Found only in eukaryotes, subunit Va is one of three mammalian subunits that lacks a transmembrane region. Subunit Va is located on the matrix side of the membrane and binds thyroid hormone T2, releasing allosteric inhibition caused by the binding of ATP to subunit IV and allowing high turnover at elevated intramitochondrial ATP/ADP ratios.
Probab=81.87 E-value=8.6 Score=28.71 Aligned_cols=59 Identities=17% Similarity=0.319 Sum_probs=39.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 047767 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 561 (666)
++.+-++.+....+.|+.....+.+.+|.+.+++..|.++++.++.+.+ .+...|..++
T Consensus 25 e~rr~mN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~vK~K~~--~~~~~y~~~l 83 (103)
T cd00923 25 ELRRGLNNLFGYDLVPEPKVIEAALRACRRVNDFALAVRILEAIKDKCG--AHKEIYPYIL 83 (103)
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHcc--CchhhHHHHH
Confidence 3445555666666778888888888888888888888888877775422 2334555554
No 349
>KOG0551 consensus Hsp90 co-chaperone CNS1 (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=81.86 E-value=8.4 Score=36.18 Aligned_cols=91 Identities=12% Similarity=0.125 Sum_probs=71.1
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC----CCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP----GGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
..|.-=.+-|.+..++..|...|.+-. ..| +...|+.-..+-...||+..|+.-..+++..+|.+..+|+.=+.
T Consensus 82 en~KeeGN~~fK~Kryk~A~~~Yt~Glk~kc~D~dlnavLY~NRAAa~~~l~NyRs~l~Dcs~al~~~P~h~Ka~~R~Ak 161 (390)
T KOG0551|consen 82 ENYKEEGNEYFKEKRYKDAVESYTEGLKKKCADPDLNAVLYTNRAAAQLYLGNYRSALNDCSAALKLKPTHLKAYIRGAK 161 (390)
T ss_pred HHHHHHhHHHHHhhhHHHHHHHHHHHHhhcCCCccHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCcchhhhhhhhhH
Confidence 334444667888899999999887543 233 45677777777778899999999999999999999999999999
Q ss_pred HHhhcCCchHHHHHHHH
Q 047767 629 FYSEIGEFEVSMQIRET 645 (666)
Q Consensus 629 ~~~~~g~~~~A~~~~~~ 645 (666)
++....++.+|..+.+.
T Consensus 162 c~~eLe~~~~a~nw~ee 178 (390)
T KOG0551|consen 162 CLLELERFAEAVNWCEE 178 (390)
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999887766665543
No 350
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=81.63 E-value=20 Score=27.02 Aligned_cols=87 Identities=20% Similarity=0.167 Sum_probs=58.4
Q ss_pred ChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHH
Q 047767 125 FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA 204 (666)
Q Consensus 125 ~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 204 (666)
..++|..+-+.+...+-. ...+--.-+..+...|++++|..+.+.+.-||...|-+|-.. +.|..+.+..-+.+|..
T Consensus 20 cHqEA~tIAdwL~~~~~~-~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce~--rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 20 CHQEANTIADWLHLKGES-EEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCEW--RLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHHhcCCch-HHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHHH--hhccHHHHHHHHHHHHh
Confidence 456666666666554311 223333344567788999999999999988999988877653 66777777777777777
Q ss_pred cCCCCCHhhHH
Q 047767 205 EGVEPNGLSFC 215 (666)
Q Consensus 205 ~~~~p~~~t~~ 215 (666)
.| .|...+|.
T Consensus 97 sg-~p~lq~Fa 106 (115)
T TIGR02508 97 SG-DPRLQTFV 106 (115)
T ss_pred CC-CHHHHHHH
Confidence 65 45444443
No 351
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=81.34 E-value=13 Score=29.91 Aligned_cols=71 Identities=15% Similarity=0.010 Sum_probs=51.5
Q ss_pred CCCchHHHHHHHHHHhcCChH---HHHHHHHhCC--CCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 551 DADRQHYSCMIDMLGRAGILD---KAEELLQQTP--GGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 551 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~--~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
.++..+--.+..++.+..+.+ +.+.+++++. ..| +....--|.-++.+.++++.+.++.+..++.+|+|..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e~~n~Q 106 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETEPNNRQ 106 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhCCCcHH
Confidence 566677777888888877644 5566777655 334 2334445666788999999999999999999998743
No 352
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=81.25 E-value=6.3 Score=34.53 Aligned_cols=73 Identities=21% Similarity=0.122 Sum_probs=56.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCc---chHHHHHH
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQ-QTPGGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF---AVYSQVSN 628 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~ 628 (666)
+.+.-+..+.+.+.+.+|+...+ .++.+| |...-..+++.++-.|++++|..-++-+-++.|++. ..|.+++.
T Consensus 3 Tl~~t~seLL~~~sL~dai~~a~~qVkakPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~l~p~~t~~a~lyr~lir 80 (273)
T COG4455 3 TLRDTISELLDDNSLQDAIGLARDQVKAKPTDAGGRHFLFQLLCVAGDWEKALAQLNLAATLSPQDTVGASLYRHLIR 80 (273)
T ss_pred chHHHHHHHHHhccHHHHHHHHHHHHhcCCccccchhHHHHHHhhcchHHHHHHHHHHHhhcCcccchHHHHHHHHHH
Confidence 34455677888999999998876 466677 777888888999999999999999999999998763 33444444
No 353
>smart00386 HAT HAT (Half-A-TPR) repeats. Present in several RNA-binding proteins. Structurally and sequentially thought to be similar to TPRs.
Probab=80.90 E-value=3.5 Score=23.16 Aligned_cols=30 Identities=17% Similarity=0.304 Sum_probs=24.9
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 047767 600 GNEIIGRRVANILMELEPVDFAVYSQVSNF 629 (666)
Q Consensus 600 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 629 (666)
|+.+.+..+|++++...|.++..|...+..
T Consensus 1 ~~~~~~r~i~e~~l~~~~~~~~~W~~y~~~ 30 (33)
T smart00386 1 GDIERARKIYERALEKFPKSVELWLKYAEF 30 (33)
T ss_pred CcHHHHHHHHHHHHHHCCCChHHHHHHHHH
Confidence 567889999999999999888888877654
No 354
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=80.77 E-value=86 Score=33.66 Aligned_cols=29 Identities=17% Similarity=0.195 Sum_probs=24.1
Q ss_pred HHHHHHHHhhCCHHHHHHHhccCCCCCHH
Q 047767 456 CSLMDAYSRCGHIELSHQVFEKIPSPNVV 484 (666)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 484 (666)
..|+..|...++++.|.+.+-...++++.
T Consensus 509 e~La~LYl~d~~Y~~Al~~ylklk~~~vf 537 (846)
T KOG2066|consen 509 EVLAHLYLYDNKYEKALPIYLKLQDKDVF 537 (846)
T ss_pred HHHHHHHHHccChHHHHHHHHhccChHHH
Confidence 34888999999999999999888876554
No 355
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=80.26 E-value=13 Score=36.83 Aligned_cols=129 Identities=11% Similarity=0.057 Sum_probs=91.0
Q ss_pred HHHcCChhHHHH-HHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChH
Q 047767 493 YSRNGMGREALD-MLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571 (666)
Q Consensus 493 ~~~~~~~~~a~~-~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 571 (666)
....|+...|.+ ++..++...-.|+.....+.| +...|+++.+.+.+...... +-....+..++++...+.|+++
T Consensus 299 ~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~i--~~~lg~ye~~~~~~s~~~~~--~~s~~~~~~~~~r~~~~l~r~~ 374 (831)
T PRK15180 299 QLADGDIIAASQQLFAALRNQQQDPVLIQLRSVI--FSHLGYYEQAYQDISDVEKI--IGTTDSTLRCRLRSLHGLARWR 374 (831)
T ss_pred HhhccCHHHHHHHHHHHHHhCCCCchhhHHHHHH--HHHhhhHHHHHHHhhchhhh--hcCCchHHHHHHHhhhchhhHH
Confidence 345677776654 566666644556665444443 66789999999999887643 4455778888999999999999
Q ss_pred HHHHHHHhCCCCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 572 KAEELLQQTPGGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 572 ~A~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
+|..+-+.|...- +..............|-++++...|++++.++|+...-|.+
T Consensus 375 ~a~s~a~~~l~~eie~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~ 430 (831)
T PRK15180 375 EALSTAEMMLSNEIEDEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVN 430 (831)
T ss_pred HHHHHHHHHhccccCChhheeeecccHHHHhHHHHHHHHHHHHhccCChhccccee
Confidence 9999988776222 33344334445567789999999999999999775444443
No 356
>PF02284 COX5A: Cytochrome c oxidase subunit Va; InterPro: IPR003204 Cytochrome c oxidase (1.9.3.1 from EC) is an oligomeric enzymatic complex which is a component of the respiratory chain complex and is involved in the transfer of electrons from cytochrome c to oxygen []. In eukaryotes this enzyme complex is located in the mitochondrial inner membrane; in aerobic prokaryotes it is found in the plasma membrane. In eukaryotes, in addition to the three large subunits, I, II and III, that form the catalytic centre of the enzyme complex, there are a variable number of small polypeptidic subunits. One of these subunits is known as Va.; GO: 0004129 cytochrome-c oxidase activity; PDB: 2DYR_R 3AG1_E 3ABL_E 1V54_R 2EIJ_R 1OCR_E 2DYS_E 2EIM_E 2OCC_E 3ASN_R ....
Probab=80.06 E-value=8.6 Score=29.05 Aligned_cols=47 Identities=13% Similarity=0.067 Sum_probs=31.8
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 047767 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240 (666)
Q Consensus 194 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 240 (666)
+..+-++.+....+.|++......+++|.+.+++..|..+++.+..+
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aALrAcRRvND~a~AVR~lE~iK~K 74 (108)
T PF02284_consen 28 ELRRGLNNLFGYDLVPEPKIIEAALRACRRVNDFALAVRILEGIKDK 74 (108)
T ss_dssp HHHHHHHHHTTSSB---HHHHHHHHHHHHHTT-HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCChHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 44555666666677788888888888888888888888888877765
No 357
>KOG4507 consensus Uncharacterized conserved protein, contains TPR repeats [Function unknown]
Probab=79.73 E-value=9.3 Score=38.82 Aligned_cols=131 Identities=12% Similarity=0.053 Sum_probs=88.1
Q ss_pred CCHHHHHHHHHHhcCC--CcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHH-hcCChHHHHHHHHhCC-CCC--CHHHH
Q 047767 516 PDKVTFLCVLAGCNHS--GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG-RAGILDKAEELLQQTP-GGG--DCMMW 589 (666)
Q Consensus 516 p~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~-~~~--~~~~~ 589 (666)
|+..+..+++.-.... ..-+-+-.++-.| .. .+-|--.+.| +...|. ..|+...|.+.+.... ..| .....
T Consensus 569 ~~~~~~k~~~~r~~~~~i~e~e~~~~~~~~~-~~-~~~p~w~~ln-~aglywr~~gn~~~a~~cl~~a~~~~p~~~~v~~ 645 (886)
T KOG4507|consen 569 PDDHARKILLSRINNYTIPEEEIGSFLFHAI-NK-PNAPIWLILN-EAGLYWRAVGNSTFAIACLQRALNLAPLQQDVPL 645 (886)
T ss_pred chHHHHHHHHHHHhcccCcHHHHHHHHHHHh-cC-CCCCeEEEee-cccceeeecCCcHHHHHHHHHHhccChhhhcccH
Confidence 5666555554433221 1122333333333 22 3334333333 233444 4789999999887654 556 33455
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
-.|.....+.|-.-.|-.++.+.+.+....|-+++.+|.+|....+.+.|++.|+.+.+.
T Consensus 646 v~la~~~~~~~~~~da~~~l~q~l~~~~sepl~~~~~g~~~l~l~~i~~a~~~~~~a~~~ 705 (886)
T KOG4507|consen 646 VNLANLLIHYGLHLDATKLLLQALAINSSEPLTFLSLGNAYLALKNISGALEAFRQALKL 705 (886)
T ss_pred HHHHHHHHHhhhhccHHHHHHHHHhhcccCchHHHhcchhHHHHhhhHHHHHHHHHHHhc
Confidence 567777788888888999999999998888999999999999999999999999987654
No 358
>KOG1464 consensus COP9 signalosome, subunit CSN2 [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=79.49 E-value=50 Score=30.19 Aligned_cols=218 Identities=13% Similarity=0.213 Sum_probs=117.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHc---C--CCCCHHHHHHHhchhhhhcccchhhHHHHHHHHH----Hh-CCCCch
Q 047767 383 CNSLMTSLLHSGNIKDAVEMFGFMVDE---G--IGLDEVTLSTTLKALSVSASANLGSCRLLHCCAI----KS-GFESNI 452 (666)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~---~--~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~----~~-~~~~~~ 452 (666)
...+|....+.+++++.++.+.+|..- . ..-+..+.++++.- .+...+.+....+++--. .. +-..-.
T Consensus 68 LKQmiKI~f~l~~~~eMm~~Y~qlLTYIkSAVTrNySEKsIN~IlDy--iStS~~m~LLQ~FYeTTL~ALkdAKNeRLWF 145 (440)
T KOG1464|consen 68 LKQMIKINFRLGNYKEMMERYKQLLTYIKSAVTRNYSEKSINSILDY--ISTSKNMDLLQEFYETTLDALKDAKNERLWF 145 (440)
T ss_pred HHHHHHHHhccccHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHH--HhhhhhhHHHHHHHHHHHHHHHhhhcceeee
Confidence 345666777777777777777776431 1 12345556666665 444444444444433221 11 111122
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhccCCC---------------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCC
Q 047767 453 AVSCSLMDAYSRCGHIELSHQVFEKIPS---------------PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIP 516 (666)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p 516 (666)
.+-+.|...|...|.+.+...+++++.+ .-...|..-|..|...++-..-..++++...-. .-|
T Consensus 146 KTNtKLgkl~fd~~e~~kl~KIlkqLh~SCq~edGedD~kKGtQLLEiYAlEIQmYT~qKnNKkLK~lYeqalhiKSAIP 225 (440)
T KOG1464|consen 146 KTNTKLGKLYFDRGEYTKLQKILKQLHQSCQTEDGEDDQKKGTQLLEIYALEIQMYTEQKNNKKLKALYEQALHIKSAIP 225 (440)
T ss_pred eccchHhhhheeHHHHHHHHHHHHHHHHHhccccCchhhhccchhhhhHhhHhhhhhhhcccHHHHHHHHHHHHhhccCC
Confidence 2334466667777777777777776642 123467777888888888888888888766422 234
Q ss_pred CHHHHHHHHHHh-----cCCCcHHHHHHHHHHhHHhhCC--CCC-c--hHHHHHHHHHHhcCChHHHHHHHHhCC-----
Q 047767 517 DKVTFLCVLAGC-----NHSGMVKEGQLVFNSMKSVYGI--DAD-R--QHYSCMIDMLGRAGILDKAEELLQQTP----- 581 (666)
Q Consensus 517 ~~~~~~~l~~~~-----~~~g~~~~a~~~~~~~~~~~~~--~p~-~--~~~~~l~~~~~~~g~~~~A~~~~~~~~----- 581 (666)
.+. ...+++-| .+.|++++|..-|-++...+.- .|. . --|-.|++.+.+.|- .=|+.-.
T Consensus 226 HPl-ImGvIRECGGKMHlreg~fe~AhTDFFEAFKNYDEsGspRRttCLKYLVLANMLmkS~i-----NPFDsQEAKPyK 299 (440)
T KOG1464|consen 226 HPL-IMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYLVLANMLMKSGI-----NPFDSQEAKPYK 299 (440)
T ss_pred chH-HHhHHHHcCCccccccchHHHHHhHHHHHHhcccccCCcchhHHHHHHHHHHHHHHcCC-----CCCcccccCCCC
Confidence 433 33445544 4678888876544444333221 222 2 224455666666652 1122211
Q ss_pred CCCCHHHHHHHHHHHHhhCChHHHHHHH
Q 047767 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVA 609 (666)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 609 (666)
..|.......++.+|..+ +..+-++++
T Consensus 300 NdPEIlAMTnlv~aYQ~N-dI~eFE~Il 326 (440)
T KOG1464|consen 300 NDPEILAMTNLVAAYQNN-DIIEFERIL 326 (440)
T ss_pred CCHHHHHHHHHHHHHhcc-cHHHHHHHH
Confidence 334556667777777553 443333333
No 359
>COG4455 ImpE Protein of avirulence locus involved in temperature-dependent protein secretion [General function prediction only]
Probab=78.80 E-value=47 Score=29.47 Aligned_cols=72 Identities=10% Similarity=0.098 Sum_probs=42.5
Q ss_pred HHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHH
Q 047767 487 TSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMI 561 (666)
Q Consensus 487 ~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~ 561 (666)
+..+..+.+.+...+++...++-++. +| |..+-..+++.++-.|+|++|..-++-..+ +.|+ ..+|..++
T Consensus 5 ~~t~seLL~~~sL~dai~~a~~qVka--kPtda~~RhflfqLlcvaGdw~kAl~Ql~l~a~---l~p~~t~~a~lyr~li 79 (273)
T COG4455 5 RDTISELLDDNSLQDAIGLARDQVKA--KPTDAGGRHFLFQLLCVAGDWEKALAQLNLAAT---LSPQDTVGASLYRHLI 79 (273)
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHhc--CCccccchhHHHHHHhhcchHHHHHHHHHHHhh---cCcccchHHHHHHHHH
Confidence 44455666667777777777666553 34 333556666677777777777766665543 2333 45555555
Q ss_pred HH
Q 047767 562 DM 563 (666)
Q Consensus 562 ~~ 563 (666)
++
T Consensus 80 r~ 81 (273)
T COG4455 80 RC 81 (273)
T ss_pred HH
Confidence 43
No 360
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=77.86 E-value=7.1 Score=29.49 Aligned_cols=54 Identities=11% Similarity=0.116 Sum_probs=39.8
Q ss_pred HHhhCChHHHHHHHHHHHhcCCCC---------cchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 596 CRVHGNEIIGRRVANILMELEPVD---------FAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 596 ~~~~~~~~~a~~~~~~~~~~~p~~---------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
..+.||+..|.+.+.+..+..... ..+...++.+....|+.++|.+.+++..+.
T Consensus 8 ~~~~~dy~~A~d~L~~~fD~~~~~~~~~~~~~~~~all~lA~~~~~~G~~~~A~~~l~eAi~~ 70 (94)
T PF12862_consen 8 ALRSGDYSEALDALHRYFDYAKQSNNSSSNSGLAYALLNLAELHRRFGHYEEALQALEEAIRL 70 (94)
T ss_pred HHHcCCHHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 456788889988888877633221 234566888889999999999999987653
No 361
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=77.78 E-value=19 Score=32.34 Aligned_cols=104 Identities=12% Similarity=-0.040 Sum_probs=67.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhh-----CCCCC-----------chHHHHHHHHHHhcCChHHHHHHHHhCC-CC
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVY-----GIDAD-----------RQHYSCMIDMLGRAGILDKAEELLQQTP-GG 583 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-----------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~ 583 (666)
...-.+-+.+.|++.+|..-|.++.... .-+|. ...+..+..++...|++-++++...++. ..
T Consensus 181 l~q~GN~lfk~~~ykEA~~~YreAi~~l~~L~lkEkP~e~eW~eLdk~~tpLllNy~QC~L~~~e~yevleh~seiL~~~ 260 (329)
T KOG0545|consen 181 LHQEGNRLFKLGRYKEASSKYREAIICLRNLQLKEKPGEPEWLELDKMITPLLLNYCQCLLKKEEYYEVLEHCSEILRHH 260 (329)
T ss_pred HHHhhhhhhhhccHHHHHHHHHHHHHHHHHHHhccCCCChHHHHHHHhhhHHHHhHHHHHhhHHHHHHHHHHHHHHHhcC
Confidence 4444556778888888888887754210 11232 2334455567777888888888777765 22
Q ss_pred C-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHH
Q 047767 584 G-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 584 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 624 (666)
| +...|---..+....-+.++|.+-+.++++++|.-..+..
T Consensus 261 ~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldpslasvVs 302 (329)
T KOG0545|consen 261 PGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDPSLASVVS 302 (329)
T ss_pred CchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcChhhHHHHH
Confidence 3 5666666666666667888888888888888886544443
No 362
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=77.78 E-value=61 Score=30.23 Aligned_cols=91 Identities=11% Similarity=0.009 Sum_probs=47.8
Q ss_pred HHHcCCChHHHHHHHHH----hHhcCCCCChhhHHHHHHHHhccCChh-hHHHHHHHHHHh----CCCCCchhHHhHHHH
Q 047767 287 IYADYDLIFDALELFFR----MQLCRKRPSIRSFVEFLNFASRTGNVY-FGKQIHGYVTKL----GFDHGSVHVQSALTD 357 (666)
Q Consensus 287 ~~~~~g~~~~a~~~~~~----m~~~~~~p~~~t~~~ll~~~~~~~~~~-~a~~~~~~~~~~----~~~~~~~~~~~~l~~ 357 (666)
.+.+.|+...|-++..- ..+.+.+++......++..+...+.-+ .-..+.+.+.+. +.+.+++.....+..
T Consensus 19 ~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~r~~fi~~ai~WS~~~~~~~Gdp~LH~~~a~ 98 (260)
T PF04190_consen 19 ILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPERKKFIKAAIKWSKFGSYKFGDPELHHLLAE 98 (260)
T ss_dssp HHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TTHHHHHHHHHHHHHTSS-TT--HHHHHHHHH
T ss_pred HHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHccCCCCCCCHHHHHHHHH
Confidence 34555655554444333 334566666666556655554443221 233333333332 344458899999999
Q ss_pred HHHhcCChHHHHHHhccCCC
Q 047767 358 MYGKCNVIESSVAVFESAPG 377 (666)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~ 377 (666)
.|.+.|++.+|...|-...+
T Consensus 99 ~~~~e~~~~~A~~Hfl~~~~ 118 (260)
T PF04190_consen 99 KLWKEGNYYEAERHFLLGTD 118 (260)
T ss_dssp HHHHTT-HHHHHHHHHTS-H
T ss_pred HHHhhccHHHHHHHHHhcCC
Confidence 99999999999987754433
No 363
>COG0790 FOG: TPR repeat, SEL1 subfamily [General function prediction only]
Probab=77.62 E-value=67 Score=30.59 Aligned_cols=116 Identities=10% Similarity=-0.011 Sum_probs=79.1
Q ss_pred CCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHH---HHHHHHHHHhh---
Q 047767 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR----AGILDKAEELLQQTPGGGDCMM---WSSLLRSCRVH--- 599 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~---~~~l~~~~~~~--- 599 (666)
...+...|..++....+. |. +.....|...|.. ..+..+|..++++.....+... ...+...+..-
T Consensus 89 v~~~~~~A~~~~~~~a~~-g~---~~a~~~lg~~~~~G~gv~~d~~~A~~~~~~Aa~~g~~~a~~~~~~l~~~~~~g~~~ 164 (292)
T COG0790 89 VSRDKTKAADWYRCAAAD-GL---AEALFNLGLMYANGRGVPLDLVKALKYYEKAAKLGNVEAALAMYRLGLAYLSGLQA 164 (292)
T ss_pred ccccHHHHHHHHHHHhhc-cc---HHHHHhHHHHHhcCCCcccCHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHcChhh
Confidence 344578888888866554 33 3344446666655 3488999999998775555543 44444444432
Q ss_pred -C---ChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh----cCCchHHHHHHHHHHhCCC
Q 047767 600 -G---NEIIGRRVANILMELEPVDFAVYSQVSNFYSE----IGEFEVSMQIRETALARKL 651 (666)
Q Consensus 600 -~---~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 651 (666)
+ +...|...+.++.+.. ++.....|+..|.. ..+..+|..+|++..+.|-
T Consensus 165 ~~~~~~~~~A~~~~~~aa~~~--~~~a~~~lg~~y~~G~Gv~~d~~~A~~wy~~Aa~~g~ 222 (292)
T COG0790 165 LAVAYDDKKALYLYRKAAELG--NPDAQLLLGRMYEKGLGVPRDLKKAFRWYKKAAEQGD 222 (292)
T ss_pred hcccHHHHhHHHHHHHHHHhc--CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCCC
Confidence 1 3447888898888876 55788889988855 3378999999999888775
No 364
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=76.74 E-value=41 Score=27.74 Aligned_cols=82 Identities=10% Similarity=0.046 Sum_probs=52.4
Q ss_pred hHHHHHHHhhcCCChhhHHHHHHHHHhCCC-----CCCcccHHHHHHHHHcCCC-hHHHHHHHHHHHHhcCCCchhhhhH
Q 047767 77 TYNLLISGCGKFRHPKQALYLYDEMVSHGI-----KESASTFSSVLSVCSNAGF-YTEGIQIHCRVLSLGFGLNLYIGSP 150 (666)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~-----~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~ 150 (666)
-.|.++.-....+++...+.+++.+..-.. ..+..+|..++++.+...- --.+..+|..+.+.+.+.++.-|..
T Consensus 41 fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~~ 120 (145)
T PF13762_consen 41 FINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYSC 120 (145)
T ss_pred HHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHHH
Confidence 356677666667777777777766632110 2355667777777766554 4456667777777667777777777
Q ss_pred HHHHhHhc
Q 047767 151 LVDLYMRM 158 (666)
Q Consensus 151 ll~~~~~~ 158 (666)
++.++.+-
T Consensus 121 li~~~l~g 128 (145)
T PF13762_consen 121 LIKAALRG 128 (145)
T ss_pred HHHHHHcC
Confidence 77766553
No 365
>PRK10941 hypothetical protein; Provisional
Probab=76.72 E-value=11 Score=35.00 Aligned_cols=68 Identities=10% Similarity=-0.134 Sum_probs=50.9
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHH
Q 047767 557 YSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 624 (666)
.+.|-.+|.+.++++.|..+.+.+. ..| +..-+.--+..|.+.|....|..-++..++..|++|.+-.
T Consensus 184 l~nLK~~~~~~~~~~~AL~~~e~ll~l~P~dp~e~RDRGll~~qL~c~~~A~~DL~~fl~~~P~dp~a~~ 253 (269)
T PRK10941 184 LDTLKAALMEEKQMELALRASEALLQFDPEDPYEIRDRGLIYAQLDCEHVALSDLSYFVEQCPEDPISEM 253 (269)
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCcHHHHHHHHHHHHhCCCchhHHH
Confidence 3456667788888888888888765 444 5556666777788888888888888888888888765543
No 366
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=75.93 E-value=67 Score=29.76 Aligned_cols=158 Identities=14% Similarity=0.040 Sum_probs=86.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHH-------HHHHHHHhcCCCcHHHHHHHHHHh---HHhhCCCCCchHHHH
Q 047767 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVT-------FLCVLAGCNHSGMVKEGQLVFNSM---KSVYGIDADRQHYSC 559 (666)
Q Consensus 490 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~-------~~~l~~~~~~~g~~~~a~~~~~~~---~~~~~~~p~~~~~~~ 559 (666)
.+-..+.+++++|+..+.++...|+..|..+ ...+...|...|+.....+..... ...+.-+-......+
T Consensus 10 a~~~v~~~~~~~ai~~yk~iL~kg~s~dek~~nEqE~tvlel~~lyv~~g~~~~l~~~i~~sre~m~~ftk~k~~Kiirt 89 (421)
T COG5159 10 ANNAVKSNDIEKAIGEYKRILGKGVSKDEKTLNEQEATVLELFKLYVSKGDYCSLGDTITSSREAMEDFTKPKITKIIRT 89 (421)
T ss_pred HHHhhhhhhHHHHHHHHHHHhcCCCChhhhhhhHHHHHHHHHHHHHHhcCCcchHHHHHHhhHHHHHHhcchhHHHHHHH
Confidence 3445567888888888888888887776544 445556677777765544443322 222121222445555
Q ss_pred HHHHHHhc-CChHHHHHHHHhCC---CCC-----CHHHHHHHHHHHHhhCChHHHHHHHHHHH----hcC--CCCcchHH
Q 047767 560 MIDMLGRA-GILDKAEELLQQTP---GGG-----DCMMWSSLLRSCRVHGNEIIGRRVANILM----ELE--PVDFAVYS 624 (666)
Q Consensus 560 l~~~~~~~-g~~~~A~~~~~~~~---~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~--p~~~~~~~ 624 (666)
|++.+-.. ..++.-+++..... .+- ....-.-++..+.+.|.+.+|+....-++ +.+ |+-..++.
T Consensus 90 Liekf~~~~dsl~dqi~v~~~~iewA~rEkr~fLr~~Le~Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhl 169 (421)
T COG5159 90 LIEKFPYSSDSLEDQIKVLTALIEWADREKRKFLRLELECKLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHL 169 (421)
T ss_pred HHHhcCCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhh
Confidence 55555432 23455554444322 000 11111235556777888888876655443 222 44444555
Q ss_pred HHHHHHhhcCCchHHHHHHHHHH
Q 047767 625 QVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 625 ~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
.-..+|....+..++..-+..++
T Consensus 170 lESKvyh~irnv~KskaSLTaAr 192 (421)
T COG5159 170 LESKVYHEIRNVSKSKASLTAAR 192 (421)
T ss_pred hhHHHHHHHHhhhhhhhHHHHHH
Confidence 55677777777777766665554
No 367
>PF12968 DUF3856: Domain of Unknown Function (DUF3856); InterPro: IPR024552 This domain of unknown function is found in a small group of tetratricopeptide-like proteins, which includes the uncharacterised protein Q8KAL8 from SWISSPROT. The structure of Q8KAL8 is known and belongs to the SCOP all alpha class, TPR-like superfamily, CT2138-like family.; PDB: 2HR2_D.
Probab=75.75 E-value=37 Score=26.69 Aligned_cols=62 Identities=13% Similarity=0.035 Sum_probs=40.3
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHh-------cCCCCcchHH----HHHHHHhhcCCchHHHHHHHHH
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILME-------LEPVDFAVYS----QVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-------~~p~~~~~~~----~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
|..++..|..++...|++++++...++++. ++.+....|. +-+.++-..|+.++|++.|++.
T Consensus 54 DA~chA~Ls~A~~~Lgry~e~L~sA~~aL~YFNRRGEL~qdeGklWIaaVfsra~Al~~~Gr~~eA~~~fr~a 126 (144)
T PF12968_consen 54 DAFCHAGLSGALAGLGRYDECLQSADRALRYFNRRGELHQDEGKLWIAAVFSRAVALEGLGRKEEALKEFRMA 126 (144)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHHHHHHH--TTSTHHHHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHhcCChHHHHHHHHHH
Confidence 445566666777777887777665555543 5555544443 4566777889999999999854
No 368
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=75.48 E-value=41 Score=31.37 Aligned_cols=120 Identities=12% Similarity=0.160 Sum_probs=71.8
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHh-CCCCCCcccHHHHHHHHHc-CC-ChHHHHHHHHHHHH-hcCCCchhhhhHHHH
Q 047767 78 YNLLISGCGKFRHPKQALYLYDEMVS-HGIKESASTFSSVLSVCSN-AG-FYTEGIQIHCRVLS-LGFGLNLYIGSPLVD 153 (666)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~-~~~~~~~~~~~~ll~~~~~-~~-~~~~a~~~~~~~~~-~~~~~~~~~~~~ll~ 153 (666)
|..|+. ++.-..+|+.+|+.... ..+--|..+...+++.... .+ ....-.++.+.+.. .+..++..+...++.
T Consensus 134 Y~~LVk---~N~~Vv~aL~L~~~~~~~~~Ii~d~evislLL~sMv~~~~~~l~alYEvV~~l~~t~~~~l~~~vi~~Il~ 210 (292)
T PF13929_consen 134 YWDLVK---RNKIVVEALKLYDGLNPDESIIFDEEVISLLLKSMVIDENTKLNALYEVVDFLVSTFSKSLTRNVIISILE 210 (292)
T ss_pred HHHHHH---hhHHHHHHHHHhhccCcccceeeChHHHHHHHHHHHhccccchhhHHHHHHHHHhccccCCChhHHHHHHH
Confidence 555552 33445667777763322 2244466666666666655 22 33333344444443 234566667777777
Q ss_pred HhHhcCChhHHHHhhccCCC-----CCcccHHHHHHHHHhcCCchHHHHHHH
Q 047767 154 LYMRMGPSVRALDLFDELPE-----RNLATWNLMLRAFCELSRPDEVLRMYN 200 (666)
Q Consensus 154 ~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~ 200 (666)
.++..+++.+-.++++.... .|...|..+|......|+..-...+.+
T Consensus 211 ~L~~~~dW~kl~~fW~~~~~~~~~~~D~rpW~~FI~li~~sgD~~~~~kiI~ 262 (292)
T PF13929_consen 211 ILAESRDWNKLFQFWEQCIPNSVPGNDPRPWAEFIKLIVESGDQEVMRKIID 262 (292)
T ss_pred HHHhcccHHHHHHHHHHhcccCCCCCCCchHHHHHHHHHHcCCHHHHHHHhh
Confidence 77888888877777765443 466678888888888888765555543
No 369
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.24 E-value=5 Score=28.62 Aligned_cols=47 Identities=9% Similarity=0.005 Sum_probs=28.2
Q ss_pred CCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHH
Q 047767 530 HSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEEL 576 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~ 576 (666)
...+.+.|+..|....++..-.|+ ..++..|+.+|+..|++++++++
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~f 65 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAF 65 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 455566777777776665222222 45556666777777777666654
No 370
>PF10579 Rapsyn_N: Rapsyn N-terminal myristoylation and linker region; InterPro: IPR019568 Neuromuscular junction formation relies upon the clustering of acetylcholine receptors and other proteins in the muscle membrane. Rapsyn is a peripheral membrane protein that is selectively concentrated at the neuromuscular junction and is essential for the formation of synaptic acetylcholine receptor aggregates. Acetylcholine receptors fail to aggregate beneath nerve terminals in mice where rapsyn has been knocked out. The N-terminal six amino acids of rapsyn are its myristoylation site, and myristoylation is necessary for the targeting of the protein to the membrane []. ; GO: 0008270 zinc ion binding, 0033130 acetylcholine receptor binding, 0007268 synaptic transmission, 0005856 cytoskeleton, 0030054 cell junction, 0045211 postsynaptic membrane
Probab=75.06 E-value=6.1 Score=28.21 Aligned_cols=46 Identities=7% Similarity=-0.029 Sum_probs=35.0
Q ss_pred hhCChHHHHHHHHHHHhcCCCCcchHHHHH---HHHhhcCCchHHHHHH
Q 047767 598 VHGNEIIGRRVANILMELEPVDFAVYSQVS---NFYSEIGEFEVSMQIR 643 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~---~~~~~~g~~~~A~~~~ 643 (666)
...+.++|+..++++++..++.+..+..|| .+|+..|++.+++++-
T Consensus 18 ~~~~~~~Al~~W~~aL~k~~~~~~rf~~lG~l~qA~~e~Gkyr~~L~fA 66 (80)
T PF10579_consen 18 HQNETQQALQKWRKALEKITDREDRFRVLGYLIQAHMEWGKYREMLAFA 66 (80)
T ss_pred ccchHHHHHHHHHHHHhhcCChHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 566788899999999998877766666554 5667788888877763
No 371
>PRK15180 Vi polysaccharide biosynthesis protein TviD; Provisional
Probab=74.44 E-value=17 Score=35.94 Aligned_cols=137 Identities=18% Similarity=0.185 Sum_probs=86.2
Q ss_pred HHHHhhCCHHHHH-HHhccCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcH
Q 047767 460 DAYSRCGHIELSH-QVFEKIPS----PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMV 534 (666)
Q Consensus 460 ~~~~~~g~~~~A~-~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~ 534 (666)
.--...|++-.|- +++..+.. |+.+...+. .+...|+++.+...+...... +.....+...++....+.|++
T Consensus 297 ~k~~~~gd~~aas~~~~~~lr~~~~~p~~i~l~~~--i~~~lg~ye~~~~~~s~~~~~-~~s~~~~~~~~~r~~~~l~r~ 373 (831)
T PRK15180 297 TKQLADGDIIAASQQLFAALRNQQQDPVLIQLRSV--IFSHLGYYEQAYQDISDVEKI-IGTTDSTLRCRLRSLHGLARW 373 (831)
T ss_pred HHHhhccCHHHHHHHHHHHHHhCCCCchhhHHHHH--HHHHhhhHHHHHHHhhchhhh-hcCCchHHHHHHHhhhchhhH
Confidence 3334567776654 44444432 554444333 456789999999988766543 445556888999999999999
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHH--HHhhCC
Q 047767 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRS--CRVHGN 601 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~--~~~~~~ 601 (666)
++|...-+.|... .++ +++....-.-..-..|-++++...++++. .+|....|-..+.. |...|+
T Consensus 374 ~~a~s~a~~~l~~-eie-~~ei~~iaa~sa~~l~~~d~~~~~wk~~~~~~~~~~~g~v~~~~~~~~~~~~~ 442 (831)
T PRK15180 374 REALSTAEMMLSN-EIE-DEEVLTVAAGSADALQLFDKSYHYWKRVLLLNPETQSGWVNFLSSTQYFNDGN 442 (831)
T ss_pred HHHHHHHHHHhcc-ccC-ChhheeeecccHHHHhHHHHHHHHHHHHhccCChhcccceeeeccceeccCcc
Confidence 9999999999865 443 33333322223334577889998888765 44444555555544 344443
No 372
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=74.28 E-value=1.3e+02 Score=33.46 Aligned_cols=112 Identities=14% Similarity=0.098 Sum_probs=57.5
Q ss_pred hhhHHHHhHhcCCChhhHHHHhhcCCCCC-------chhHHHHHHHhhcCCCh--hhHHHHHHHHHhCCCCCCcccHHH-
Q 047767 46 SSNRTIDDFVKSGHLNSAKKLFDEMPARD-------MVTYNLLISGCGKFRHP--KQALYLYDEMVSHGIKESASTFSS- 115 (666)
Q Consensus 46 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-------~~~~~~ll~~~~~~~~~--~~a~~~~~~m~~~~~~~~~~~~~~- 115 (666)
-|..|+..|...|+.++|+++|......+ ..-+..++.-+-+.+.. +-++++-....+....-....|..
T Consensus 506 ~y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~wvl~~~p~~gi~Ift~~ 585 (877)
T KOG2063|consen 506 KYRELIELYATKGMHEKALQLLRDLVDEDSDTDSFQLDGLEKIIEYLKKLGAENLDLILEYADWVLNKNPEAGIQIFTSE 585 (877)
T ss_pred cHHHHHHHHHhccchHHHHHHHHHHhccccccccchhhhHHHHHHHHHHhcccchhHHHHHhhhhhccCchhheeeeecc
Confidence 45667777777777777777776665311 11233344444444443 444444444433321111111111
Q ss_pred -----------HHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHh
Q 047767 116 -----------VLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157 (666)
Q Consensus 116 -----------ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 157 (666)
.+-.+......+.+...++.+....-.++....+.++..|++
T Consensus 586 ~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly~e 638 (877)
T KOG2063|consen 586 DKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLYLE 638 (877)
T ss_pred ChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHHHH
Confidence 122334445566666666666665555566666666666654
No 373
>PF06552 TOM20_plant: Plant specific mitochondrial import receptor subunit TOM20; InterPro: IPR010547 This family consists of several plant specific mitochondrial import receptor subunit TOM20 (translocase of outer membrane 20 kDa subunit) proteins. Most mitochondrial proteins are encoded by the nuclear genome, and are synthesised in the cytosol. TOM20 is a general import receptor that binds to mitochondrial pre-sequences in the early step of protein import into the mitochondria [].; GO: 0045040 protein import into mitochondrial outer membrane, 0005742 mitochondrial outer membrane translocase complex; PDB: 1ZU2_A.
Probab=74.16 E-value=38 Score=29.04 Aligned_cols=44 Identities=7% Similarity=0.017 Sum_probs=26.7
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 601 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
.+++|.+.|+++.+.+|.|. .|..-.... .+|-++..++...+.
T Consensus 95 ~F~kA~~~FqkAv~~~P~ne-~Y~ksLe~~------~kap~lh~e~~~~~~ 138 (186)
T PF06552_consen 95 YFEKATEYFQKAVDEDPNNE-LYRKSLEMA------AKAPELHMEIHKQGL 138 (186)
T ss_dssp HHHHHHHHHHHHHHH-TT-H-HHHHHHHHH------HTHHHHHHHHHHSSS
T ss_pred HHHHHHHHHHHHHhcCCCcH-HHHHHHHHH------HhhHHHHHHHHHHHh
Confidence 36778888888888999874 454433333 356666666655543
No 374
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=73.99 E-value=6.1 Score=34.90 Aligned_cols=55 Identities=22% Similarity=0.181 Sum_probs=30.3
Q ss_pred HhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 565 GRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 565 ~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
.+.|+.+.|.+++.+.. ..| ....|..+.....+.|+++.|.+.|++.++++|+|
T Consensus 6 ~~~~D~~aaaely~qal~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L~ldp~D 62 (287)
T COG4976 6 AESGDAEAAAELYNQALELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVLELDPED 62 (287)
T ss_pred cccCChHHHHHHHHHHhhcCchhhhhhhhcchhhhhcccHHHHHHHHHHHHcCCccc
Confidence 44555555555555544 223 34455555555555666666666666666666654
No 375
>PF14561 TPR_20: Tetratricopeptide repeat; PDB: 3QOU_A 2R5S_A 3QDN_B.
Probab=73.60 E-value=32 Score=25.67 Aligned_cols=43 Identities=9% Similarity=0.145 Sum_probs=24.6
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
+..+++.++.+|+|....+.|+..+...|++++|++.+-.+..
T Consensus 8 ~~al~~~~a~~P~D~~ar~~lA~~~~~~g~~e~Al~~Ll~~v~ 50 (90)
T PF14561_consen 8 IAALEAALAANPDDLDARYALADALLAAGDYEEALDQLLELVR 50 (90)
T ss_dssp HHHHHHHHHHSTT-HHHHHHHHHHHHHTT-HHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 3445555566666666666666666666666666666555544
No 376
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=73.34 E-value=70 Score=28.77 Aligned_cols=48 Identities=19% Similarity=0.335 Sum_probs=36.8
Q ss_pred HHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH
Q 047767 471 SHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV 519 (666)
Q Consensus 471 A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~ 519 (666)
+..+|+-.-+|.+.....++..|. .+++++|.++++++.+.|+.|...
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Di 274 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDI 274 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHH
Confidence 445566566688888888887655 478999999999999999888654
No 377
>KOG1498 consensus 26S proteasome regulatory complex, subunit RPN5/PSMD12 [Posttranslational modification, protein turnover, chaperones]
Probab=73.29 E-value=96 Score=30.32 Aligned_cols=181 Identities=10% Similarity=0.074 Sum_probs=105.9
Q ss_pred CCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHH-H-HHHHHcCCCCCHHHHHHH
Q 047767 447 GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDM-L-EVMIQRGLIPDKVTFLCV 524 (666)
Q Consensus 447 ~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~-~-~~m~~~g~~p~~~~~~~l 524 (666)
....+..++..++..|...++|+.--+.. ....-++|+...|..- . +-|.-..-.||..|-..+
T Consensus 47 D~~s~~kv~~~i~~lc~~~~~w~~Lne~i--------------~~Lskkrgqlk~ai~~Mvq~~~~y~~~~~d~~~k~~l 112 (439)
T KOG1498|consen 47 DMASNTKVLEEIMKLCFSAKDWDLLNEQI--------------RLLSKKRGQLKQAIQSMVQQAMTYIDGTPDLETKIKL 112 (439)
T ss_pred hHHHHHHHHHHHHHHHhccccHHHHHHHH--------------HHHHHHhhHHHHHHHHHHHHHHHhccCCCCchhHHHH
Confidence 44455666666777777777766533221 1122345555555432 1 222222234555555555
Q ss_pred HHHhcC--CCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCC--------CHHHHHHHHH
Q 047767 525 LAGCNH--SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGG--------DCMMWSSLLR 594 (666)
Q Consensus 525 ~~~~~~--~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--------~~~~~~~l~~ 594 (666)
+..+.. .|+ +|-+..+ ...-..|.+.+...|+.++|..++.+.+... -.....--++
T Consensus 113 i~tLr~Vtegk------IyvEvER-------arlTk~L~~ike~~Gdi~~Aa~il~el~VETygsm~~~ekV~fiLEQmr 179 (439)
T KOG1498|consen 113 IETLRTVTEGK------IYVEVER-------ARLTKMLAKIKEEQGDIAEAADILCELQVETYGSMEKSEKVAFILEQMR 179 (439)
T ss_pred HHHHHHhhcCc------eEEeehH-------HHHHHHHHHHHHHcCCHHHHHHHHHhcchhhhhhhHHHHHHHHHHHHHH
Confidence 544321 111 1111110 2334567788889999999999998877222 1222223456
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCcc-------hHHHHHHHHhhcCCchHHHHHHHHHHhCCCCcC
Q 047767 595 SCRVHGNEIIGRRVANILMELEPVDFA-------VYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654 (666)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 654 (666)
.|...+|+-.|.-+-+++....-+++. .|..++....+.+.+=.+.+.|+...+-|-.+.
T Consensus 180 KOG~~~D~vra~i~skKI~~K~F~~~~~~~lKlkyY~lmI~l~lh~~~Yl~v~~~Yraiy~t~~vk~ 246 (439)
T KOG1498|consen 180 LCLLRLDYVRAQIISKKINKKFFEKPDVQELKLKYYELMIRLGLHDRAYLNVCRSYRAIYDTGNVKE 246 (439)
T ss_pred HHHHhhhHHHHHHHHHHhhHHhcCCccHHHHHHHHHHHHHHhcccccchhhHHHHHHHHhccccccc
Confidence 788889999998888887664322222 366777888899999999999998877654443
No 378
>TIGR03504 FimV_Cterm FimV C-terminal domain. This protein is found at the extreme C-terminus of FimV from Pseudomonas aeruginosa, and of TspA of Neisseria meningitidis. Disruption of the former blocks twitching motility from type IV pili; Semmler, et al. suggest a role in peptidoglycan layer remodelling required by type IV fimbrial systems.
Probab=73.19 E-value=8.5 Score=24.00 Aligned_cols=25 Identities=28% Similarity=0.422 Sum_probs=17.9
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcC
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRG 513 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g 513 (666)
|..+|...|+.+.|.+++++....|
T Consensus 5 LA~ayie~Gd~e~Ar~lL~evl~~~ 29 (44)
T TIGR03504 5 LARAYIEMGDLEGARELLEEVIEEG 29 (44)
T ss_pred HHHHHHHcCChHHHHHHHHHHHHcC
Confidence 5567777777777777777777543
No 379
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=72.86 E-value=1.5e+02 Score=32.50 Aligned_cols=182 Identities=12% Similarity=-0.012 Sum_probs=94.6
Q ss_pred hhCCHHHHHHHhccCCC--------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH---HHHHH--HHhcC
Q 047767 464 RCGHIELSHQVFEKIPS--------PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT---FLCVL--AGCNH 530 (666)
Q Consensus 464 ~~g~~~~A~~~~~~~~~--------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l~--~~~~~ 530 (666)
..|+++.|..+-+...+ +.+..+..+..+..-.|++++|..+.++..+..-.-+... |..+. ..+..
T Consensus 470 ~~~~~e~a~~lar~al~~L~~~~~~~r~~~~sv~~~a~~~~G~~~~Al~~~~~a~~~a~~~~~~~l~~~~~~~~s~il~~ 549 (894)
T COG2909 470 NRGDPEEAEDLARLALVQLPEAAYRSRIVALSVLGEAAHIRGELTQALALMQQAEQMARQHDVYHLALWSLLQQSEILEA 549 (894)
T ss_pred hcCCHHHHHHHHHHHHHhcccccchhhhhhhhhhhHHHHHhchHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHH
Confidence 45777777666554431 5667777788888888999999888877665422223322 22222 23556
Q ss_pred CCcHHH--HHHHHHHhHHhhCCC-C----CchHHHHHHHHHHhc-CChHHHHHHHHhC---CCCCCHH--HHHHHHHHHH
Q 047767 531 SGMVKE--GQLVFNSMKSVYGID-A----DRQHYSCMIDMLGRA-GILDKAEELLQQT---PGGGDCM--MWSSLLRSCR 597 (666)
Q Consensus 531 ~g~~~~--a~~~~~~~~~~~~~~-p----~~~~~~~l~~~~~~~-g~~~~A~~~~~~~---~~~~~~~--~~~~l~~~~~ 597 (666)
.|+... ....+......+... | -..++..+..++.+. +...+|..-++-- ...|-.. .+..|+....
T Consensus 550 qGq~~~a~~~~~~~~~~~q~l~q~~~~~f~~~~r~~ll~~~~r~~~~~~ear~~~~~~~~~~~~~~~~~~~~~~LA~l~~ 629 (894)
T COG2909 550 QGQVARAEQEKAFNLIREQHLEQKPRHEFLVRIRAQLLRAWLRLDLAEAEARLGIEVGSVYTPQPLLSRLALSMLAELEF 629 (894)
T ss_pred hhHHHHHHHHHHHHHHHHHHhhhcccchhHHHHHHHHHHHHHHHhhhhHHhhhcchhhhhcccchhHHHHHHHHHHHHHH
Confidence 664333 333333333321111 1 123444455555551 1122222222211 1122111 2224566677
Q ss_pred hhCChHHHHHHHHHHHhcCCCC-cchHH----HHHH--HHhhcCCchHHHHHHHH
Q 047767 598 VHGNEIIGRRVANILMELEPVD-FAVYS----QVSN--FYSEIGEFEVSMQIRET 645 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~-~~~~~----~l~~--~~~~~g~~~~A~~~~~~ 645 (666)
..|+.+.|...+.++..+--+. +.+++ .++. ....+|+.++|.....+
T Consensus 630 ~~Gdl~~A~~~l~~~~~l~~~~~~~~~~~a~~~~v~~~lwl~qg~~~~a~~~l~~ 684 (894)
T COG2909 630 LRGDLDKALAQLDELERLLLNGQYHVDYLAAAYKVKLILWLAQGDKELAAEWLLK 684 (894)
T ss_pred hcCCHHHHHHHHHHHHHHhcCCCCCchHHHHHHHhhHHHhcccCCHHHHHHHHHh
Confidence 8899999998888877733222 22221 2222 23467888888877654
No 380
>COG4941 Predicted RNA polymerase sigma factor containing a TPR repeat domain [Transcription]
Probab=72.39 E-value=92 Score=29.73 Aligned_cols=122 Identities=7% Similarity=-0.014 Sum_probs=83.6
Q ss_pred ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc------CCCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHHHHHhcCCh
Q 047767 498 MGREALDMLEVMIQRGLIPDKVTFLCVLAGCN------HSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGIL 570 (666)
Q Consensus 498 ~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~------~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~ 570 (666)
-+++++.++++....+ .|........|.+|- ..-+|.....+|+.+... .|++ .+.|- .-+.....-+
T Consensus 271 lI~eg~all~rA~~~~-~pGPYqlqAAIaa~HA~a~~aedtDW~~I~aLYdaL~~~---apSPvV~LNR-AVAla~~~Gp 345 (415)
T COG4941 271 LIDEGLALLDRALASR-RPGPYQLQAAIAALHARARRAEDTDWPAIDALYDALEQA---APSPVVTLNR-AVALAMREGP 345 (415)
T ss_pred HHHHHHHHHHHHHHcC-CCChHHHHHHHHHHHHhhcccCCCChHHHHHHHHHHHHh---CCCCeEeehH-HHHHHHhhhH
Confidence 3678888898888876 488887777776652 234688888889888754 5663 33333 2334444556
Q ss_pred HHHHHHHHhCCCCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHH
Q 047767 571 DKAEELLQQTPGGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 571 ~~A~~~~~~~~~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 624 (666)
+.++..++.+...| -...+..-...+.+.|..++|...|++++++.++.+..-+
T Consensus 346 ~agLa~ve~L~~~~~L~gy~~~h~~RadlL~rLgr~~eAr~aydrAi~La~~~aer~~ 403 (415)
T COG4941 346 AAGLAMVEALLARPRLDGYHLYHAARADLLARLGRVEEARAAYDRAIALARNAAERAF 403 (415)
T ss_pred HhHHHHHHHhhcccccccccccHHHHHHHHHHhCChHHHHHHHHHHHHhcCChHHHHH
Confidence 77788887776554 2233334445578899999999999999999887654433
No 381
>TIGR02508 type_III_yscG type III secretion protein, YscG family. YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designate Yops (Yersinia outer proteins) in Yersinia. This family consists of YscG of Yersinia, and functionally equivalent type III secretion machinery protein in other species: AscG in Aeromonas, LscG in Photorhabdus luminescens, etc.
Probab=72.33 E-value=40 Score=25.54 Aligned_cols=78 Identities=12% Similarity=0.023 Sum_probs=51.3
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 047767 227 LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQL 306 (666)
Q Consensus 227 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (666)
.++|..+-+.+...+ .....+-..-+..+...|++++|..+.+.+.-||...|-+|.. .+.|.-+....-+..|..
T Consensus 21 HqEA~tIAdwL~~~~--~~~E~v~lIRlsSLmNrG~Yq~Al~l~~~~~~pdlepw~ALce--~rlGl~s~l~~rl~rla~ 96 (115)
T TIGR02508 21 HQEANTIADWLHLKG--ESEEAVQLIRLSSLMNRGDYQSALQLGNKLCYPDLEPWLALCE--WRLGLGSALESRLNRLAA 96 (115)
T ss_pred HHHHHHHHHHHhcCC--chHHHHHHHHHHHHHccchHHHHHHhcCCCCCchHHHHHHHHH--HhhccHHHHHHHHHHHHh
Confidence 455555555554443 2233333344456778899999999999998899999987765 355666666666666665
Q ss_pred cC
Q 047767 307 CR 308 (666)
Q Consensus 307 ~~ 308 (666)
+|
T Consensus 97 sg 98 (115)
T TIGR02508 97 SG 98 (115)
T ss_pred CC
Confidence 54
No 382
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=71.43 E-value=24 Score=30.18 Aligned_cols=47 Identities=15% Similarity=0.129 Sum_probs=25.2
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHH
Q 047767 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
.|.+.|.+++|.+++++... +|++...-..|..+-.....+..-++.
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~-d~~~~~~r~kL~~II~~Kd~~h~~lqn 166 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFS-DPESQKLRMKLLMIIREKDPAHPVLQN 166 (200)
T ss_pred HHHhcCchHHHHHHHHHHhc-CCCchhHHHHHHHHHHccccccHHHHh
Confidence 45566666666666666555 555544444444444444444444443
No 383
>PF11207 DUF2989: Protein of unknown function (DUF2989); InterPro: IPR021372 Some members in this bacterial family of proteins are annotated as lipoproteins however this cannot be confirmed.
Probab=71.25 E-value=31 Score=30.19 Aligned_cols=74 Identities=5% Similarity=-0.050 Sum_probs=38.9
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhh--CCCCCchHHHHHHHHHHhcCChHHHH
Q 047767 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY--GIDADRQHYSCMIDMLGRAGILDKAE 574 (666)
Q Consensus 500 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--~~~p~~~~~~~l~~~~~~~g~~~~A~ 574 (666)
+.|.+.|-++...+.--+......|...|. ..+.+++.+++-+..+.. +-.+|+..+.+|+..|.+.|+++.|-
T Consensus 123 ~~A~~~fL~~E~~~~l~t~elq~aLAtyY~-krD~~Kt~~ll~~~L~l~~~~~~~n~eil~sLas~~~~~~~~e~AY 198 (203)
T PF11207_consen 123 QEALRRFLQLEGTPELETAELQYALATYYT-KRDPEKTIQLLLRALELSNPDDNFNPEILKSLASIYQKLKNYEQAY 198 (203)
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHH-ccCHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHhcchhhhh
Confidence 445555555555443333333333443333 455666666666655432 11345666666666666666666553
No 384
>KOG2471 consensus TPR repeat-containing protein [General function prediction only]
Probab=70.97 E-value=1.1e+02 Score=30.87 Aligned_cols=105 Identities=5% Similarity=-0.074 Sum_probs=66.3
Q ss_pred hcCCCcHHHHHHHHHHhHHh--hCC--CCC---chHHHHHHHHHHhcCChHHHHHHHHhCC----------CCC------
Q 047767 528 CNHSGMVKEGQLVFNSMKSV--YGI--DAD---RQHYSCMIDMLGRAGILDKAEELLQQTP----------GGG------ 584 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~--~~~--~p~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~------ 584 (666)
+.-.|++..|.+++-..--. .|. .|. ...||.|.-.+.+.|.+.-+..+|.+.. .+|
T Consensus 250 eY~~gn~~kA~KlL~~sni~~~~g~~~T~q~~~cif~NNlGcIh~~~~~y~~~~~~F~kAL~N~c~qL~~g~~~~~~~tl 329 (696)
T KOG2471|consen 250 EYAHGNHPKAMKLLLVSNIHKEAGGTITPQLSSCIFNNNLGCIHYQLGCYQASSVLFLKALRNSCSQLRNGLKPAKTFTL 329 (696)
T ss_pred HHHhcchHHHHHHHHhcccccccCccccchhhhheeecCcceEeeehhhHHHHHHHHHHHHHHHHHHHhccCCCCcceeh
Confidence 33457777777776543110 011 111 2224555555666676666666655432 122
Q ss_pred ----C-HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc
Q 047767 585 ----D-CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633 (666)
Q Consensus 585 ----~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 633 (666)
. ..+| ..+-.+...|+.-.|.+.|.++....-.+|..|..|+.+|...
T Consensus 330 s~nks~eilY-NcG~~~Lh~grPl~AfqCf~~av~vfh~nPrlWLRlAEcCima 382 (696)
T KOG2471|consen 330 SQNKSMEILY-NCGLLYLHSGRPLLAFQCFQKAVHVFHRNPRLWLRLAECCIMA 382 (696)
T ss_pred hcccchhhHH-hhhHHHHhcCCcHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 1 1233 2344678889999999999999998888999999999999754
No 385
>KOG1550 consensus Extracellular protein SEL-1 and related proteins [Cell wall/membrane/envelope biogenesis; Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=70.40 E-value=1.5e+02 Score=31.43 Aligned_cols=148 Identities=10% Similarity=0.052 Sum_probs=84.2
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHH---Hh----cCC
Q 047767 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML---GR----AGI 569 (666)
Q Consensus 497 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~---~~----~g~ 569 (666)
.+...|..++++..+.| .|-..--...+..+.. ++++.+...+..+.+. |.+.....-..+.... .. ..+
T Consensus 378 r~~~~A~~~~k~aA~~g-~~~A~~~~~~~~~~g~-~~~~~~~~~~~~~a~~-g~~~~q~~a~~l~~~~~~~~~~~~~~~~ 454 (552)
T KOG1550|consen 378 RNLELAFAYYKKAAEKG-NPSAAYLLGAFYEYGV-GRYDTALALYLYLAEL-GYEVAQSNAAYLLDQSEEDLFSRGVIST 454 (552)
T ss_pred CCHHHHHHHHHHHHHcc-ChhhHHHHHHHHHHcc-ccccHHHHHHHHHHHh-hhhHHhhHHHHHHHhccccccccccccc
Confidence 36667777777777776 3332222222233333 5566655555555544 3322211111111111 11 124
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHHhh----CChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc-CC--chHHHHH
Q 047767 570 LDKAEELLQQTPGGGDCMMWSSLLRSCRVH----GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI-GE--FEVSMQI 642 (666)
Q Consensus 570 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~--~~~A~~~ 642 (666)
.+.+..++.......+......+...|..- .+.+.|...|.++.... +....+|++.+-.- |- +..|.++
T Consensus 455 ~~~~~~~~~~a~~~g~~~a~~~lgd~y~~g~g~~~d~~~a~~~y~~a~~~~---~~~~~nlg~~~e~g~g~~~~~~a~~~ 531 (552)
T KOG1550|consen 455 LERAFSLYSRAAAQGNADAILKLGDYYYYGLGTGRDPEKAAAQYARASEQG---AQALFNLGYMHEHGEGIKVLHLAKRY 531 (552)
T ss_pred hhHHHHHHHHHHhccCHHHHhhhcceeeecCCCCCChHHHHHHHHHHHHhh---hHHHhhhhhHHhcCcCcchhHHHHHH
Confidence 555666666666666766666666665433 36888888888887776 67888888888642 22 5788888
Q ss_pred HHHHHhCC
Q 047767 643 RETALARK 650 (666)
Q Consensus 643 ~~~~~~~~ 650 (666)
+.+..+.+
T Consensus 532 ~~~~~~~~ 539 (552)
T KOG1550|consen 532 YDQASEED 539 (552)
T ss_pred HHHHHhcC
Confidence 88776543
No 386
>PRK12798 chemotaxis protein; Reviewed
Probab=69.79 E-value=1.2e+02 Score=30.08 Aligned_cols=179 Identities=11% Similarity=0.139 Sum_probs=119.2
Q ss_pred hCCHHHHHHHhccCCC----CCHHHHHHHHHHH-HHcCChhHHHHHHHHHHHcCCCCCHH----HHHHHHHHhcCCCcHH
Q 047767 465 CGHIELSHQVFEKIPS----PNVVCFTSIMNGY-SRNGMGREALDMLEVMIQRGLIPDKV----TFLCVLAGCNHSGMVK 535 (666)
Q Consensus 465 ~g~~~~A~~~~~~~~~----~~~~~~~~li~~~-~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~l~~~~~~~g~~~ 535 (666)
.|+.++|.+.|..+.. +....|-.|+.+- ....++.+|+++|++.+- .-|-.. ....-+......|+.+
T Consensus 125 ~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP~~Al~~lD~aRL--laPGTLvEEAALRRsi~la~~~g~~~ 202 (421)
T PRK12798 125 SGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDPATALKLLDQARL--LAPGTLVEEAALRRSLFIAAQLGDAD 202 (421)
T ss_pred cCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCHHHHHHHHHHHHH--hCCchHHHHHHHHHhhHHHHhcCcHH
Confidence 5899999999998874 4566777777664 456789999999999886 556543 2333444567889999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHH-HHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHH
Q 047767 536 EGQLVFNSMKSVYGIDADRQHYS-CMIDMLGRAG---ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611 (666)
Q Consensus 536 ~a~~~~~~~~~~~~~~p~~~~~~-~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 611 (666)
++..+-..-...|...|=..-|. .++..+.+.+ +.+.-..++..|...-....|..+.+.-...|+.+.|.-.-++
T Consensus 203 rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~ 282 (421)
T PRK12798 203 KFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRDARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASER 282 (421)
T ss_pred HHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccHHHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHH
Confidence 98887777777655555533332 2333444333 3444555566666333567899999999999999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHh-----hcCCchHHHHHHHHH
Q 047767 612 LMELEPVDFAVYSQVSNFYS-----EIGEFEVSMQIRETA 646 (666)
Q Consensus 612 ~~~~~p~~~~~~~~l~~~~~-----~~g~~~~A~~~~~~~ 646 (666)
++.+... ...-...+.+|. -..+.++|.+.+..+
T Consensus 283 A~~L~~~-~~~~~~ra~LY~aaa~v~s~~~~~al~~L~~I 321 (421)
T PRK12798 283 ALKLADP-DSADAARARLYRGAALVASDDAESALEELSQI 321 (421)
T ss_pred HHHhccC-CCcchHHHHHHHHHHccCcccHHHHHHHHhcC
Confidence 9987743 233333444443 234566666655544
No 387
>PHA02537 M terminase endonuclease subunit; Provisional
Probab=68.27 E-value=93 Score=28.16 Aligned_cols=106 Identities=14% Similarity=0.106 Sum_probs=56.0
Q ss_pred HHHcCChhHHHHHHHHHHHcCCC-CCHH--HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCC
Q 047767 493 YSRNGMGREALDMLEVMIQRGLI-PDKV--TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI 569 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~-p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 569 (666)
+...|+++.|+++.+-+++.|.+ |+.+ ++-+++ .|+....-...... |-..++.....+...-..
T Consensus 93 ~~D~Gd~~~AL~ia~yAI~~~l~~Pd~f~R~~~t~v--------aeev~~~A~~~~~a-g~~~e~~~~~~~~~l~~~--- 160 (230)
T PHA02537 93 RFDIGDFDGALEIAEYALEHGLTMPDQFRRTLANFV--------AEEVANAALKAASA-GESVEPYFLRVFLDLTTE--- 160 (230)
T ss_pred eeeccCHHHHHHHHHHHHHcCCCCCccccCCchHHH--------HHHHHHHHHHHHHc-CCCCChHHHHHHHHHHhc---
Confidence 35678999999999999988854 4432 222222 12222222222222 333333332222111110
Q ss_pred hHHHHHHHHhCCCCCCHHHHHHHHHHHH---------hhCChHHHHHHHHHHHhcCCC
Q 047767 570 LDKAEELLQQTPGGGDCMMWSSLLRSCR---------VHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 570 ~~~A~~~~~~~~~~~~~~~~~~l~~~~~---------~~~~~~~a~~~~~~~~~~~p~ 618 (666)
.+|+.......|..++..+. ..++...|..+++++++++|+
T Consensus 161 --------~dmpd~vrAKl~K~~G~~llr~~~g~~~~d~~~l~~Al~~L~rA~~l~~k 210 (230)
T PHA02537 161 --------WDMPDEVRAKLYKAAGYLLLRNEKGEPIGDAETLQLALALLQRAFQLNDK 210 (230)
T ss_pred --------CCCChHHHHHHHHHHHHHHhhcccCCCccCcccHHHHHHHHHHHHHhCCC
Confidence 02222223445555555553 345778899999999999986
No 388
>PF13762 MNE1: Mitochondrial splicing apparatus component
Probab=68.26 E-value=29 Score=28.58 Aligned_cols=82 Identities=10% Similarity=0.202 Sum_probs=65.9
Q ss_pred hhhhHHHHhHhcCCChhhHHHHhhcCCC---------CCchhHHHHHHHhhcCCC-hhhHHHHHHHHHhCCCCCCcccHH
Q 047767 45 YSSNRTIDDFVKSGHLNSAKKLFDEMPA---------RDMVTYNLLISGCGKFRH-PKQALYLYDEMVSHGIKESASTFS 114 (666)
Q Consensus 45 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~ll~~~~~~~~-~~~a~~~~~~m~~~~~~~~~~~~~ 114 (666)
...|.++.-.+..+++.-..++++.+.. .+-..|+.++.+..+... ---+..+|..|++.+.++++.-|.
T Consensus 40 ~fiN~iL~hl~~~~nf~~~v~~L~~l~~l~~~~~~~~~~~ssf~~if~SlsnSsSaK~~~~~Lf~~Lk~~~~~~t~~dy~ 119 (145)
T PF13762_consen 40 IFINCILNHLASYQNFSGVVSILEHLHFLNTDNIIGWLDNSSFHIIFKSLSNSSSAKLTSLTLFNFLKKNDIEFTPSDYS 119 (145)
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhHHHHhhhcccchHHHHHHHHccChHHHHHHHHHHHHHHHcCCCCCHHHHH
Confidence 4567788877888889988888888752 366789999999977766 345678899999888999999999
Q ss_pred HHHHHHHcCCCh
Q 047767 115 SVLSVCSNAGFY 126 (666)
Q Consensus 115 ~ll~~~~~~~~~ 126 (666)
.++.++.+....
T Consensus 120 ~li~~~l~g~~~ 131 (145)
T PF13762_consen 120 CLIKAALRGYFH 131 (145)
T ss_pred HHHHHHHcCCCC
Confidence 999999875433
No 389
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=67.32 E-value=57 Score=33.72 Aligned_cols=76 Identities=17% Similarity=0.054 Sum_probs=46.4
Q ss_pred HHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHH
Q 047767 257 YSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIH 336 (666)
Q Consensus 257 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 336 (666)
..+.|+++.|.++..+.. +..-|..|..+..+.+++..|.+.|....+ |..|+-.+...|+-+....+-
T Consensus 647 al~lgrl~iA~~la~e~~--s~~Kw~~Lg~~al~~~~l~lA~EC~~~a~d---------~~~LlLl~t~~g~~~~l~~la 715 (794)
T KOG0276|consen 647 ALKLGRLDIAFDLAVEAN--SEVKWRQLGDAALSAGELPLASECFLRARD---------LGSLLLLYTSSGNAEGLAVLA 715 (794)
T ss_pred hhhcCcHHHHHHHHHhhc--chHHHHHHHHHHhhcccchhHHHHHHhhcc---------hhhhhhhhhhcCChhHHHHHH
Confidence 345667777766655444 566778888888888888888877776543 334455555555555444444
Q ss_pred HHHHHhC
Q 047767 337 GYVTKLG 343 (666)
Q Consensus 337 ~~~~~~~ 343 (666)
....+.|
T Consensus 716 ~~~~~~g 722 (794)
T KOG0276|consen 716 SLAKKQG 722 (794)
T ss_pred HHHHhhc
Confidence 4444444
No 390
>PHA02875 ankyrin repeat protein; Provisional
Probab=66.14 E-value=1.5e+02 Score=29.90 Aligned_cols=19 Identities=16% Similarity=0.116 Sum_probs=9.5
Q ss_pred HHHhHhcCChhHHHHhhcc
Q 047767 152 VDLYMRMGPSVRALDLFDE 170 (666)
Q Consensus 152 l~~~~~~g~~~~a~~~~~~ 170 (666)
+...+..|+.+.+..+++.
T Consensus 72 L~~A~~~g~~~~v~~Ll~~ 90 (413)
T PHA02875 72 LHDAVEEGDVKAVEELLDL 90 (413)
T ss_pred HHHHHHCCCHHHHHHHHHc
Confidence 3344455555555555543
No 391
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=65.16 E-value=62 Score=29.98 Aligned_cols=83 Identities=10% Similarity=-0.016 Sum_probs=39.3
Q ss_pred HHHHHhhCCHHHHHH----HhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH-----Hhc
Q 047767 459 MDAYSRCGHIELSHQ----VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA-----GCN 529 (666)
Q Consensus 459 ~~~~~~~g~~~~A~~----~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~-----~~~ 529 (666)
|.+++..+++.++.. .|+.-.+-.......-|-.|.+.+.+..+.++-..-...--.-+...|..++. .+.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyLl~VLl 169 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYLLHVLL 169 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHHHHHHh
Confidence 556666666666543 23332232333344444456666666666555555444211111223444433 333
Q ss_pred CCCcHHHHHHHH
Q 047767 530 HSGMVKEGQLVF 541 (666)
Q Consensus 530 ~~g~~~~a~~~~ 541 (666)
=.|.+++|+++.
T Consensus 170 PLG~~~eAeelv 181 (309)
T PF07163_consen 170 PLGHFSEAEELV 181 (309)
T ss_pred ccccHHHHHHHH
Confidence 456666666655
No 392
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=65.08 E-value=4.9 Score=39.76 Aligned_cols=99 Identities=7% Similarity=-0.075 Sum_probs=71.0
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHH-HHHHHHHHhcCChHHHHHHHH-hCCCCCC-HHHHHHHHHHHHhhCC
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY-SCMIDMLGRAGILDKAEELLQ-QTPGGGD-CMMWSSLLRSCRVHGN 601 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~-~~l~~~~~~~g~~~~A~~~~~-~~~~~~~-~~~~~~l~~~~~~~~~ 601 (666)
+......+.++.|..++.++++ +.|+...| ..=..++.+.+++..|+.=+. .+...|. ...|-.-+.+|.+.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~---ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~dP~~~K~Y~rrg~a~m~l~~ 87 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE---LDPNCAIYFANRALAHLKVESFGGALHDALKAIELDPTYIKAYVRRGTAVMALGE 87 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh---cCCcceeeechhhhhheeechhhhHHHHHHhhhhcCchhhheeeeccHHHHhHHH
Confidence 4556677889999999999985 47874443 333477888888888886544 4445553 3455555566777788
Q ss_pred hHHHHHHHHHHHhcCCCCcchHHHH
Q 047767 602 EIIGRRVANILMELEPVDFAVYSQV 626 (666)
Q Consensus 602 ~~~a~~~~~~~~~~~p~~~~~~~~l 626 (666)
+.+|+..|+......|+++.+-..+
T Consensus 88 ~~~A~~~l~~~~~l~Pnd~~~~r~~ 112 (476)
T KOG0376|consen 88 FKKALLDLEKVKKLAPNDPDATRKI 112 (476)
T ss_pred HHHHHHHHHHhhhcCcCcHHHHHHH
Confidence 9999999999999999987655444
No 393
>KOG2063 consensus Vacuolar assembly/sorting proteins VPS39/VAM6/VPS3 [Intracellular trafficking, secretion, and vesicular transport]
Probab=64.41 E-value=2.4e+02 Score=31.51 Aligned_cols=127 Identities=17% Similarity=0.129 Sum_probs=63.5
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCC--CchHHHHHHHH
Q 047767 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE--SNIAVSCSLMD 460 (666)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~ 460 (666)
|..|+.-|...|+.++|+++|.+..+..-.-| ....+.-..+.+.+.+.+-+ +-+..|...
T Consensus 507 y~~Li~LY~~kg~h~~AL~ll~~l~d~~~~~d---------------~~~~~~~e~ii~YL~~l~~~~~~Li~~y~~w-- 569 (877)
T KOG2063|consen 507 YRELIELYATKGMHEKALQLLRDLVDEDSDTD---------------SFQLDGLEKIIEYLKKLGAENLDLILEYADW-- 569 (877)
T ss_pred HHHHHHHHHhccchHHHHHHHHHHhccccccc---------------cchhhhHHHHHHHHHHhcccchhHHHHHhhh--
Confidence 78889999999999999999998876320000 00001111123333333322 222222221
Q ss_pred HHHhhCCHHHHHHHhccCCCCCHHHHH-HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047767 461 AYSRCGHIELSHQVFEKIPSPNVVCFT-SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528 (666)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 528 (666)
.-..+.+...++|..-.+....+.+ --+-.|......+-+..+++.+....-.++..-.+.++..|
T Consensus 570 --vl~~~p~~gi~Ift~~~~~~~~sis~~~Vl~~l~~~~~~l~I~YLE~li~~~~~~~~~lht~ll~ly 636 (877)
T KOG2063|consen 570 --VLNKNPEAGIQIFTSEDKQEAESISRDDVLNYLKSKEPKLLIPYLEHLISDNRLTSTLLHTVLLKLY 636 (877)
T ss_pred --hhccCchhheeeeeccChhhhccCCHHHHHHHhhhhCcchhHHHHHHHhHhccccchHHHHHHHHHH
Confidence 1234455566666551110001110 11233556667777888888887765555555555555444
No 394
>PF04097 Nic96: Nup93/Nic96; InterPro: IPR007231 Nup93/Nic96 is a component of the nuclear pore complex. It is required for the correct assembly of the nuclear pore complex []. In Saccharomyces cerevisiae, Nic96 has been shown to be involved in the distribution and cellular concentration of the GTPase Gsp1 []. The structure of Nic96 has revealed a mostly alpha helical structure [].; GO: 0006810 transport, 0005643 nuclear pore; PDB: 2QX5_B 2RFO_A.
Probab=63.40 E-value=2.1e+02 Score=30.82 Aligned_cols=278 Identities=13% Similarity=0.048 Sum_probs=0.0
Q ss_pred HHHHHHHhcCChHHHHHHh---ccCCCCCcccHHHHHHHHHhcCChh-------HHHHHHHHHHHcCC--CCCHHHHHHH
Q 047767 354 ALTDMYGKCNVIESSVAVF---ESAPGRSLECCNSLMTSLLHSGNIK-------DAVEMFGFMVDEGI--GLDEVTLSTT 421 (666)
Q Consensus 354 ~l~~~~~~~~~~~~a~~~~---~~~~~~~~~~~~~li~~~~~~~~~~-------~a~~~~~~m~~~~~--~p~~~~~~~l 421 (666)
+++-.+.++|++++|.++. +...++....+...+..|....+.. +...-|++...... .|=....-.+
T Consensus 116 a~Iyy~LR~G~~~~A~~~~~~~~~~~~~~~~~f~~~l~~~~~s~~~~l~~~~~~~l~~ey~~~~r~~~~~DpyK~AvY~i 195 (613)
T PF04097_consen 116 ALIYYCLRCGDYDEALEVANENRNQFQKIERSFPTYLKAYASSPDRRLPPELRDKLKLEYNQRIRNSTDGDPYKRAVYKI 195 (613)
T ss_dssp HHHHHHHTTT-HHHHHHHHHHTGGGS-TTTTHHHHHHHHCTTTTSS---TCCCHHHHHHHHHHTTT-TTS-HHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHhhhhhcchhHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHHhcCCCCCChHHHHHHHH
Q ss_pred hchhhhhcccc--------hhhHHHHHHHHHHhCCCCchH-----HHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHH
Q 047767 422 LKALSVSASAN--------LGSCRLLHCCAIKSGFESNIA-----VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTS 488 (666)
Q Consensus 422 l~~~~~~~~~~--------~~~a~~~~~~~~~~~~~~~~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 488 (666)
|.. |.-... .+.-..+.-.+.+.....+.. ++..|-....+-|. ..|.. ..++..|
T Consensus 196 lg~--cD~~~~~~~~V~~tiED~LW~~L~~vr~~~~~~~~~~e~~~L~~LQ~~i~~~Ge-----~~F~~--~~~p~~Y-- 264 (613)
T PF04097_consen 196 LGR--CDLSRRHLPEVARTIEDWLWLQLSLVREDERSSSSAYERYTLEDLQKLILKYGE-----SHFNA--GSNPLLY-- 264 (613)
T ss_dssp HHT----CCC-S-TTC--SHHHHHHHHHHH---TTSSSSSSS----HHHHHHHHHHH-G-----GGCTT--------H--
T ss_pred Hhc--CCccccchHHHhCcHHHHHHHHHHhhccCCCccccccccccHHHHHHHHHHhch-----hhccc--chhHHHH--
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHH---
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG--- 565 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~--- 565 (666)
...+.-.|.++.|++++-+ ..+...|.+.+...+..+.-.+-.+... ..+.....-.|..-.+..|+..|+
T Consensus 265 -f~~LlLtgqFE~AI~~L~~--~~~~~~dAVH~AIaL~~~gLL~~~~~~~---~~lls~~~~~~~~ln~arLI~~Y~~~F 338 (613)
T PF04097_consen 265 -FQVLLLTGQFEAAIEFLYR--NEFNRVDAVHFAIALAYYGLLRVSDSSS---APLLSVDPGDPPPLNFARLIGQYTRSF 338 (613)
T ss_dssp -HHHHHHTT-HHHHHHHHHT----T-HHHHHHHHHHHHHTT---------------------------HHHHHHHHHHTT
T ss_pred -HHHHHHHhhHHHHHHHHHh--hccCcccHHHHHHHHHHcCCCCCCCccc---cceeeecCCCCCCcCHHHHHHHHHHHH
Q ss_pred hcCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHhhC-----------ChHHHHHHHHH------HHhcCCCCcchHH
Q 047767 566 RAGILDKAEELLQQTPGGGD----CMMWSSLLRSCRVHG-----------NEIIGRRVANI------LMELEPVDFAVYS 624 (666)
Q Consensus 566 ~~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~~~-----------~~~~a~~~~~~------~~~~~p~~~~~~~ 624 (666)
+..++.+|.+++--+...++ ...+..+-......+ +...---++++ .......-..+..
T Consensus 339 ~~td~~~Al~Y~~li~~~~~~~~~~l~~~~l~eLvletref~~LLG~i~~dG~r~~G~i~~~~~Li~~~~~~~~~~~i~~ 418 (613)
T PF04097_consen 339 EITDPREALQYLYLICLFKDPEQRNLFHECLRELVLETREFDLLLGDINPDGSRTPGLIERRLSLIKFDDDEDFLREIIE 418 (613)
T ss_dssp TTT-HHHHHHHHHGGGGS-SCCHHHHHHHHHHHHHHHH--HHHHHEEE-TTS-EEE-HHHHTGGGGT-SSSSHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHcCCchHHHHHHHHHHHHHHccCCHHHHCCCCCCCCccccceeeccccccCCCCcHHHHHHHHH
Q ss_pred HHHHHHhhcCCchHHHHHHHHHHh
Q 047767 625 QVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 625 ~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
..+.-+...|++++|+.+|..+.+
T Consensus 419 ~~A~~~e~~g~~~dAi~Ly~La~~ 442 (613)
T PF04097_consen 419 QAAREAEERGRFEDAILLYHLAEE 442 (613)
T ss_dssp HHHHHHHHCT-HHHHHHHHHHTT-
T ss_pred HHHHHHHHCCCHHHHHHHHHHHhh
No 395
>PF10366 Vps39_1: Vacuolar sorting protein 39 domain 1; InterPro: IPR019452 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised.
Probab=63.16 E-value=70 Score=24.91 Aligned_cols=75 Identities=8% Similarity=0.047 Sum_probs=0.0
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCch
Q 047767 558 SCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637 (666)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 637 (666)
++|+++|... +......+++.-. .-+.++.++.+++ ..-|..|+..|...|..+
T Consensus 3 TaLlk~Yl~~-~~~~l~~llr~~N-----------------~C~~~~~e~~L~~--------~~~~~eL~~lY~~kg~h~ 56 (108)
T PF10366_consen 3 TALLKCYLET-NPSLLGPLLRLPN-----------------YCDLEEVEEVLKE--------HGKYQELVDLYQGKGLHR 56 (108)
T ss_pred HHHHHHHHHh-CHHHHHHHHccCC-----------------cCCHHHHHHHHHH--------cCCHHHHHHHHHccCccH
Q ss_pred HHHHHHHHHHhCCCCcCCCce
Q 047767 638 VSMQIRETALARKLTRDIGHS 658 (666)
Q Consensus 638 ~A~~~~~~~~~~~~~~~~~~~ 658 (666)
+|++++.++.+.......+..
T Consensus 57 ~AL~ll~~l~~~~~~~~~~~~ 77 (108)
T PF10366_consen 57 KALELLKKLADEEDSDEEDPF 77 (108)
T ss_pred HHHHHHHHHhccccccccccc
No 396
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=62.38 E-value=30 Score=30.46 Aligned_cols=33 Identities=15% Similarity=0.104 Sum_probs=13.0
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
+...+..++.++...|+.++|.+..+++....|
T Consensus 143 ~~~~~~~~a~~l~~~G~~~eA~~~~~~~~~lyP 175 (193)
T PF11846_consen 143 DPNVYQRYALALALLGDPEEARQWLARARRLYP 175 (193)
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 333333333333333444444444444444444
No 397
>PF09670 Cas_Cas02710: CRISPR-associated protein (Cas_Cas02710)
Probab=62.15 E-value=1.1e+02 Score=30.40 Aligned_cols=52 Identities=15% Similarity=0.062 Sum_probs=28.8
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHHHhc--CCCcHHHHHHHHHHhHH
Q 047767 494 SRNGMGREALDMLEVMIQRGLIPDKV--TFLCVLAGCN--HSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 494 ~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~~~~--~~g~~~~a~~~~~~~~~ 546 (666)
...+++..|.++++++... ++++.. .+..+..+|. ..-++++|.+.++....
T Consensus 142 ~n~~~y~aA~~~l~~l~~r-l~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~l~~~~~ 197 (379)
T PF09670_consen 142 FNRYDYGAAARILEELLRR-LPGREEYQRYKDLCEGYDAWDRFDHKEALEYLEKLLK 197 (379)
T ss_pred HhcCCHHHHHHHHHHHHHh-CCchhhHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 3556777777777776665 444443 2333334433 34456666666666554
No 398
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=61.98 E-value=72 Score=24.61 Aligned_cols=80 Identities=14% Similarity=0.076 Sum_probs=50.8
Q ss_pred CChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHh
Q 047767 225 MLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRM 304 (666)
Q Consensus 225 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m 304 (666)
...++|..+.+.+...+ .....+.-.-+..+.+.|++++|...=.....||...|-+|.. .+.|--+++...+.++
T Consensus 20 HcH~EA~tIa~wL~~~~--~~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 20 HCHQEANTIADWLEQEG--EMEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp T-HHHHHHHHHHHHHTT--TTHHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCC--cHHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 45677777777777765 3444555555667788888888865556666778888877654 5677777777777777
Q ss_pred HhcC
Q 047767 305 QLCR 308 (666)
Q Consensus 305 ~~~~ 308 (666)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 5543
No 399
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=61.53 E-value=1.2e+02 Score=26.84 Aligned_cols=29 Identities=14% Similarity=0.130 Sum_probs=19.7
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 047767 484 VCFTSIMNGYSRNGMGREALDMLEVMIQR 512 (666)
Q Consensus 484 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 512 (666)
...+.++..+...|+++.|-+.|.-++..
T Consensus 42 ~~L~~lLh~~llr~d~~rA~Raf~lLiR~ 70 (199)
T PF04090_consen 42 RVLTDLLHLCLLRGDWDRAYRAFGLLIRC 70 (199)
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHcC
Confidence 34556666677777777777777776653
No 400
>KOG4642 consensus Chaperone-dependent E3 ubiquitin protein ligase (contains TPR repeats) [Posttranslational modification, protein turnover, chaperones]
Probab=61.05 E-value=1.3e+02 Score=27.30 Aligned_cols=114 Identities=11% Similarity=-0.050 Sum_probs=73.4
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHH-HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCCh
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDKVTF-LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGIL 570 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~ 570 (666)
|....++..|+..|.+.+. +.|+..+| ..=+.++.+..+++.+.+-..+.. .+.|+ +....-+...+.....+
T Consensus 20 ~f~~k~y~~ai~~y~raI~--~nP~~~~Y~tnralchlk~~~~~~v~~dcrral---ql~~N~vk~h~flg~~~l~s~~~ 94 (284)
T KOG4642|consen 20 CFIPKRYDDAIDCYSRAIC--INPTVASYYTNRALCHLKLKHWEPVEEDCRRAL---QLDPNLVKAHYFLGQWLLQSKGY 94 (284)
T ss_pred ccchhhhchHHHHHHHHHh--cCCCcchhhhhHHHHHHHhhhhhhhhhhHHHHH---hcChHHHHHHHHHHHHHHhhccc
Confidence 4445678888887777777 77877654 444556667777877776666665 45666 44444566677777788
Q ss_pred HHHHHHHHhC-------CCCCCHHHHHHHHHHHHhhCChHHHHHHHHH
Q 047767 571 DKAEELLQQT-------PGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611 (666)
Q Consensus 571 ~~A~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 611 (666)
++|+..+++. +.++....+..|..+-...-...++.++.++
T Consensus 95 ~eaI~~Lqra~sl~r~~~~~~~~di~~~L~~ak~~~w~v~e~~Ri~Q~ 142 (284)
T KOG4642|consen 95 DEAIKVLQRAYSLLREQPFTFGDDIPKALRDAKKKRWEVSEEKRIRQE 142 (284)
T ss_pred cHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHhCccchhHHHHHHHH
Confidence 8888877654 2344556676666665555555555555554
No 401
>PF07720 TPR_3: Tetratricopeptide repeat; InterPro: IPR011716 This entry includes tetratricopeptide-like repeats found in the LcrH/SycD-like chaperones [].; PDB: 3KS2_O 3GZ2_A 3GZ1_A 3GYZ_A 4AM9_A 2VGX_A 2VGY_A.
Probab=60.40 E-value=33 Score=20.26 Aligned_cols=20 Identities=5% Similarity=0.298 Sum_probs=9.8
Q ss_pred HHHHHHHHhhcCCchHHHHH
Q 047767 623 YSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 623 ~~~l~~~~~~~g~~~~A~~~ 642 (666)
+..++-.+..+|++++|+++
T Consensus 4 ~y~~a~~~y~~~ky~~A~~~ 23 (36)
T PF07720_consen 4 LYGLAYNFYQKGKYDEAIHF 23 (36)
T ss_dssp HHHHHHHHHHTT-HHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHH
Confidence 34445555555555555555
No 402
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=60.03 E-value=60 Score=25.84 Aligned_cols=46 Identities=11% Similarity=0.063 Sum_probs=34.0
Q ss_pred HHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 047767 195 VLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240 (666)
Q Consensus 195 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 240 (666)
..+-+..+..-.+.|++.....-+++|.+.+|+..|..+|+.+..+
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K 113 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK 113 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444555556677888888888888888888888888888877665
No 403
>PF14853 Fis1_TPR_C: Fis1 C-terminal tetratricopeptide repeat; PDB: 1IYG_A 1PC2_A 1NZN_A 3UUX_C 1Y8M_A 2PQR_A 2PQN_A 3O48_A.
Probab=60.00 E-value=30 Score=22.69 Aligned_cols=33 Identities=15% Similarity=0.198 Sum_probs=20.8
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLC 523 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~ 523 (666)
+.-++.+.|++++|.+..+.+.+ +.|+..-...
T Consensus 7 lAig~ykl~~Y~~A~~~~~~lL~--~eP~N~Qa~~ 39 (53)
T PF14853_consen 7 LAIGHYKLGEYEKARRYCDALLE--IEPDNRQAQS 39 (53)
T ss_dssp HHHHHHHTT-HHHHHHHHHHHHH--HTTS-HHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHh--hCCCcHHHHH
Confidence 44566777777777777777777 6676554333
No 404
>PRK13342 recombination factor protein RarA; Reviewed
Probab=59.96 E-value=2e+02 Score=29.14 Aligned_cols=111 Identities=10% Similarity=0.084 Sum_probs=58.4
Q ss_pred hhHHHHHHHHHhC---CC-CCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHh
Q 047767 92 KQALYLYDEMVSH---GI-KESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDL 167 (666)
Q Consensus 92 ~~a~~~~~~m~~~---~~-~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~ 167 (666)
++...+++..... |+ ..+......++..+ .|+...+..+++.+...+...+ .+...++
T Consensus 154 e~i~~lL~~~l~~~~~~~i~i~~~al~~l~~~s--~Gd~R~aln~Le~~~~~~~~It----------------~~~v~~~ 215 (413)
T PRK13342 154 EDIEQLLKRALEDKERGLVELDDEALDALARLA--NGDARRALNLLELAALGVDSIT----------------LELLEEA 215 (413)
T ss_pred HHHHHHHHHHHHHhhcCCCCCCHHHHHHHHHhC--CCCHHHHHHHHHHHHHccCCCC----------------HHHHHHH
Confidence 4555555554322 33 44444444554432 6777777777776654311111 1112222
Q ss_pred hccC---CCCCcccHHHHHHHHHh---cCCchHHHHHHHHHHHcCCCCCHhhHHHHHHH
Q 047767 168 FDEL---PERNLATWNLMLRAFCE---LSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRG 220 (666)
Q Consensus 168 ~~~~---~~~~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~ 220 (666)
+... ...+......++.++.+ .++++.|+.++..|.+.|..|....-..++.+
T Consensus 216 ~~~~~~~~d~~~~~~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 216 LQKRAARYDKDGDEHYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HhhhhhccCCCccHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 2211 11222234444555544 57899999999999999888765554444444
No 405
>PF07163 Pex26: Pex26 protein; InterPro: IPR010797 This family consists of Pex26 and related mammalian proteins. Pex26 is a type II peroxisomal membrane protein that recruits Pex6-Pex1 complexes to peroxisomes []. Mutations in Pex26 can lead to human disorders [].; GO: 0032403 protein complex binding, 0045046 protein import into peroxisome membrane, 0005779 integral to peroxisomal membrane
Probab=59.34 E-value=60 Score=30.07 Aligned_cols=75 Identities=11% Similarity=0.027 Sum_probs=38.3
Q ss_pred HHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhH
Q 047767 82 ISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156 (666)
Q Consensus 82 l~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 156 (666)
|.++++.+++.+++...-+.-+..=+.-+.....-|-.|++.+....+.++-..-+...-..+..-|.++...|.
T Consensus 90 IQALAEmnrWreVLsWvlqyYq~pEklPpkIleLCILLysKv~Ep~amlev~~~WL~~p~Nq~lp~y~~vaELyL 164 (309)
T PF07163_consen 90 IQALAEMNRWREVLSWVLQYYQVPEKLPPKILELCILLYSKVQEPAAMLEVASAWLQDPSNQSLPEYGTVAELYL 164 (309)
T ss_pred HHHHHHHhhHHHHHHHHHHHhcCcccCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHhCcccCCchhhHHHHHHHH
Confidence 567777777777766554443321112223344445556677777666666655554322222233444444443
No 406
>COG4976 Predicted methyltransferase (contains TPR repeat) [General function prediction only]
Probab=59.13 E-value=18 Score=32.19 Aligned_cols=51 Identities=14% Similarity=0.193 Sum_probs=33.9
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
..+.++.+.+.+++.+.. ++.|+ ...|-.+...-.++|+++.|.+.+++..
T Consensus 5 ~~~~~D~~aaaely~qal---~lap~w~~gwfR~g~~~ekag~~daAa~a~~~~L 56 (287)
T COG4976 5 LAESGDAEAAAELYNQAL---ELAPEWAAGWFRLGEYTEKAGEFDAAAAAYEEVL 56 (287)
T ss_pred hcccCChHHHHHHHHHHh---hcCchhhhhhhhcchhhhhcccHHHHHHHHHHHH
Confidence 445667777777777766 34454 6667677777777777777777776544
No 407
>KOG0376 consensus Serine-threonine phosphatase 2A, catalytic subunit [General function prediction only]
Probab=59.03 E-value=21 Score=35.63 Aligned_cols=104 Identities=13% Similarity=0.011 Sum_probs=75.9
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH-HHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhc
Q 047767 490 MNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL-AGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRA 567 (666)
Q Consensus 490 i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~-~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~ 567 (666)
...+...++++.|..++.+.++ +.||...|...= .++.+.+++..|..=...+.+. .|+ ...|--=..++.+.
T Consensus 11 an~~l~~~~fd~avdlysKaI~--ldpnca~~~anRa~a~lK~e~~~~Al~Da~kaie~---dP~~~K~Y~rrg~a~m~l 85 (476)
T KOG0376|consen 11 ANEALKDKVFDVAVDLYSKAIE--LDPNCAIYFANRALAHLKVESFGGALHDALKAIEL---DPTYIKAYVRRGTAVMAL 85 (476)
T ss_pred HhhhcccchHHHHHHHHHHHHh--cCCcceeeechhhhhheeechhhhHHHHHHhhhhc---CchhhheeeeccHHHHhH
Confidence 4455667899999999999999 789887654443 7888999999998888887754 465 44444444566677
Q ss_pred CChHHHHHHHHhCC-CCCCHHHHHHHHHHHHh
Q 047767 568 GILDKAEELLQQTP-GGGDCMMWSSLLRSCRV 598 (666)
Q Consensus 568 g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~ 598 (666)
+++.+|...|+... ..|+..-....+.-|-.
T Consensus 86 ~~~~~A~~~l~~~~~l~Pnd~~~~r~~~Ec~~ 117 (476)
T KOG0376|consen 86 GEFKKALLDLEKVKKLAPNDPDATRKIDECNK 117 (476)
T ss_pred HHHHHHHHHHHHhhhcCcCcHHHHHHHHHHHH
Confidence 78888888888655 67776666666666544
No 408
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=58.37 E-value=3.3e+02 Score=31.14 Aligned_cols=257 Identities=9% Similarity=-0.064 Sum_probs=143.9
Q ss_pred hHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcC
Q 047767 62 SAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGF 141 (666)
Q Consensus 62 ~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~ 141 (666)
....+.+.+..++...-..-+..+.+.+... +...+....+. ++...-...+.++...+........+..++.
T Consensus 622 ~~~~L~~~L~D~d~~VR~~Av~~L~~~~~~~-~~~~L~~aL~D---~d~~VR~~Aa~aL~~l~~~~~~~~~L~~~L~--- 694 (897)
T PRK13800 622 SVAELAPYLADPDPGVRRTAVAVLTETTPPG-FGPALVAALGD---GAAAVRRAAAEGLRELVEVLPPAPALRDHLG--- 694 (897)
T ss_pred hHHHHHHHhcCCCHHHHHHHHHHHhhhcchh-HHHHHHHHHcC---CCHHHHHHHHHHHHHHHhccCchHHHHHHhc---
Confidence 3445556666788888888888888877644 55555555542 3444444555555544322111223333333
Q ss_pred CCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHh
Q 047767 142 GLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC 221 (666)
Q Consensus 142 ~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 221 (666)
.+|..+....+.++...+..+ ...+...+..+|...-...+.++.+.+..+.. .... -.++...-.....++
T Consensus 695 ~~d~~VR~~A~~aL~~~~~~~-~~~l~~~L~D~d~~VR~~Av~aL~~~~~~~~l----~~~l---~D~~~~VR~~aa~aL 766 (897)
T PRK13800 695 SPDPVVRAAALDVLRALRAGD-AALFAAALGDPDHRVRIEAVRALVSVDDVESV----AGAA---TDENREVRIAVAKGL 766 (897)
T ss_pred CCCHHHHHHHHHHHHhhccCC-HHHHHHHhcCCCHHHHHHHHHHHhcccCcHHH----HHHh---cCCCHHHHHHHHHHH
Confidence 256666666666665543211 23344556667776666667777666554322 2222 245555555666666
Q ss_pred cccCChHH-HHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHH-HHhccCCCCChhhHHHHHHHHHcCCChHHHHH
Q 047767 222 SIGMLLDE-GKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK-KSFDFIPVDDVISWNSIVSIYADYDLIFDALE 299 (666)
Q Consensus 222 ~~~~~~~~-a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~-~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~ 299 (666)
...+..+. +...+..+.+ .++..+....+.++.+.|....+. .+...+..+|...-...+.++...+. +++..
T Consensus 767 ~~~~~~~~~~~~~L~~ll~----D~d~~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~ 841 (897)
T PRK13800 767 ATLGAGGAPAGDAVRALTG----DPDPLVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVP 841 (897)
T ss_pred HHhccccchhHHHHHHHhc----CCCHHHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHH
Confidence 66554332 2333444432 456778888888888888765542 34444455565555666777777765 44556
Q ss_pred HHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHH
Q 047767 300 LFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTK 341 (666)
Q Consensus 300 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~ 341 (666)
.+..+.+ .|+...=...+.++.+......+...+..+.+
T Consensus 842 ~L~~~L~---D~~~~VR~~A~~aL~~~~~~~~a~~~L~~al~ 880 (897)
T PRK13800 842 ALVEALT---DPHLDVRKAAVLALTRWPGDPAARDALTTALT 880 (897)
T ss_pred HHHHHhc---CCCHHHHHHHHHHHhccCCCHHHHHHHHHHHh
Confidence 6665554 35655656667777775434455555555544
No 409
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=58.36 E-value=89 Score=25.17 Aligned_cols=42 Identities=17% Similarity=0.246 Sum_probs=31.6
Q ss_pred HHHHHHHHHHh--cCCCCcchHHHHHHHHhhcCCchHHHHHHHH
Q 047767 604 IGRRVANILME--LEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645 (666)
Q Consensus 604 ~a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 645 (666)
.+.++|+.+.. +.-..+..|...+..+...|++++|.++|+.
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~~ 124 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQL 124 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHHh
Confidence 67788887776 4455677788888888888888888888864
No 410
>PF10516 SHNi-TPR: SHNi-TPR; InterPro: IPR019544 The tetratrico peptide repeat region (TPR) is a structural motif present in a wide range of proteins [, , ]. It mediates protein-protein interactions and the assembly of multiprotein complexes []. The TPR motif consists of 3-16 tandem-repeats of 34 amino acids residues, although individual TPR motifs can be dispersed in the protein sequence. Sequence alignment of the TPR domains reveals a consensus sequence defined by a pattern of small and large amino acids. TPR motifs have been identified in various different organisms, ranging from bacteria to humans. Proteins containing TPRs are involved in a variety of biological processes, such as cell cycle regulation, transcriptional control, mitochondrial and peroxisomal protein transport, neurogenesis and protein folding. The X-ray structure of a domain containing three TPRs from protein phosphatase 5 revealed that TPR adopts a helix-turn-helix arrangement, with adjacent TPR motifs packing in a parallel fashion, resulting in a spiral of repeating anti-parallel alpha-helices []. The two helices are denoted helix A and helix B. The packing angle between helix A and helix B is ~24 degrees within a single TPR and generates a right-handed superhelical shape. Helix A interacts with helix B and with helix A' of the next TPR. Two protein surfaces are generated: the inner concave surface is contributed to mainly by residue on helices A, and the other surface presents residues from both helices A and B. This entry represents SHNi-TPR (Sim3-Hif1-NASP interrupted TPR), a sequence that is an interrupted form of TPR repeat [].
Probab=58.33 E-value=23 Score=21.28 Aligned_cols=28 Identities=29% Similarity=0.355 Sum_probs=22.9
Q ss_pred chHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 621 AVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.+|..||.+-...+++++|++=|++..+
T Consensus 2 dv~~~Lgeisle~e~f~qA~~D~~~aL~ 29 (38)
T PF10516_consen 2 DVYDLLGEISLENENFEQAIEDYEKALE 29 (38)
T ss_pred cHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 5788889999999999999888876654
No 411
>COG3947 Response regulator containing CheY-like receiver and SARP domains [Signal transduction mechanisms]
Probab=57.80 E-value=43 Score=31.13 Aligned_cols=58 Identities=19% Similarity=0.054 Sum_probs=42.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 557 YSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
++.....|..+|.+.+|.++.+... ..| +...|..+++.+...||--.+.+.++++.+
T Consensus 282 lgkva~~yle~g~~neAi~l~qr~ltldpL~e~~nk~lm~~la~~gD~is~~khyerya~ 341 (361)
T COG3947 282 LGKVARAYLEAGKPNEAIQLHQRALTLDPLSEQDNKGLMASLATLGDEISAIKHYERYAE 341 (361)
T ss_pred HHHHHHHHHHcCChHHHHHHHHHHhhcChhhhHHHHHHHHHHHHhccchhhhhHHHHHHH
Confidence 4555677888888888888888765 444 677788888888888887777776666543
No 412
>PRK13800 putative oxidoreductase/HEAT repeat-containing protein; Provisional
Probab=56.59 E-value=3.5e+02 Score=30.92 Aligned_cols=158 Identities=9% Similarity=-0.003 Sum_probs=73.4
Q ss_pred ccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHH-HHHHHHHhHHhhCCCCCc
Q 047767 476 EKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKE-GQLVFNSMKSVYGIDADR 554 (666)
Q Consensus 476 ~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~~~~p~~ 554 (666)
..+..+|...-...+.++.+.+..+. + .... -.++...-.....++...+..+. +...+..+.. .+|.
T Consensus 721 ~~L~D~d~~VR~~Av~aL~~~~~~~~---l-~~~l---~D~~~~VR~~aa~aL~~~~~~~~~~~~~L~~ll~----D~d~ 789 (897)
T PRK13800 721 AALGDPDHRVRIEAVRALVSVDDVES---V-AGAA---TDENREVRIAVAKGLATLGAGGAPAGDAVRALTG----DPDP 789 (897)
T ss_pred HHhcCCCHHHHHHHHHHHhcccCcHH---H-HHHh---cCCCHHHHHHHHHHHHHhccccchhHHHHHHHhc----CCCH
Confidence 34445555555555555555443321 1 1111 23444444444555554443322 2233333332 3455
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 634 (666)
..-...+.++...|..+.+...+..+...++...-...+.++...+. +++...+..+++ +| +..+....++++.+.+
T Consensus 790 ~VR~aA~~aLg~~g~~~~~~~~l~~aL~d~d~~VR~~Aa~aL~~l~~-~~a~~~L~~~L~-D~-~~~VR~~A~~aL~~~~ 866 (897)
T PRK13800 790 LVRAAALAALAELGCPPDDVAAATAALRASAWQVRQGAARALAGAAA-DVAVPALVEALT-DP-HLDVRKAAVLALTRWP 866 (897)
T ss_pred HHHHHHHHHHHhcCCcchhHHHHHHHhcCCChHHHHHHHHHHHhccc-cchHHHHHHHhc-CC-CHHHHHHHHHHHhccC
Confidence 55666666666666655444444444445555555555555555543 234444444442 22 3455555555555543
Q ss_pred CchHHHHHHHHHH
Q 047767 635 EFEVSMQIRETAL 647 (666)
Q Consensus 635 ~~~~A~~~~~~~~ 647 (666)
.-.++...+..+.
T Consensus 867 ~~~~a~~~L~~al 879 (897)
T PRK13800 867 GDPAARDALTTAL 879 (897)
T ss_pred CCHHHHHHHHHHH
Confidence 2345555554443
No 413
>PHA02875 ankyrin repeat protein; Provisional
Probab=56.20 E-value=2.2e+02 Score=28.83 Aligned_cols=73 Identities=14% Similarity=-0.060 Sum_probs=30.7
Q ss_pred CCCccchhhhhhcccCCCCCchhh--hhHHHHhHhcCCChhhHHHHhhcCCCCCch--hHHHHHHHhhcCCChhhHHHHH
Q 047767 23 IVPLSSSLLLDSYCQPNPQLNIYS--SNRTIDDFVKSGHLNSAKKLFDEMPARDMV--TYNLLISGCGKFRHPKQALYLY 98 (666)
Q Consensus 23 ~~~~~~a~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~--~~~~ll~~~~~~~~~~~a~~~~ 98 (666)
.|+.+.+..+.+ .|..|+... ..+.+...++.|+.+-+..+++.=..++.. .....+...++.|+.+.+..++
T Consensus 12 ~g~~~iv~~Ll~---~g~~~n~~~~~g~tpL~~A~~~~~~~~v~~Ll~~ga~~~~~~~~~~t~L~~A~~~g~~~~v~~Ll 88 (413)
T PHA02875 12 FGELDIARRLLD---IGINPNFEIYDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELL 88 (413)
T ss_pred hCCHHHHHHHHH---CCCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhCCCCccccCCCcccHHHHHHHCCCHHHHHHHH
Confidence 345544444443 333333321 223444445666666555555432222211 1112233444556655444433
No 414
>KOG4521 consensus Nuclear pore complex, Nup160 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=55.49 E-value=3e+02 Score=31.52 Aligned_cols=120 Identities=10% Similarity=-0.014 Sum_probs=75.6
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCCC-CCCHHHHHHHHHH
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTPG-GGDCMMWSSLLRS 595 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~~l~~~ 595 (666)
|...++.+-..+-.+.+.++-..+.+. +.++ ..+++.+.+-....|.+-+|.+.+-..+. .-...+...++..
T Consensus 986 Ylkv~rlle~hn~~E~vcQlA~~AIe~--l~dd~ps~a~~~t~vFnhhldlgh~~qAy~ai~~npdserrrdcLRqlviv 1063 (1480)
T KOG4521|consen 986 YLKVVRLLEEHNHAEEVCQLAVKAIEN--LPDDNPSVALISTTVFNHHLDLGHWFQAYKAILRNPDSERRRDCLRQLVIV 1063 (1480)
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHh--CCCcchhHHHHHHHHHHhhhchhhHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 666777777777788888887777764 3333 55677888888888888888877654431 1123455556666
Q ss_pred HHhhCChH------------HHHH-HHHHHHhcCCCCcchHHHHHHHH-hhcCCchHHHHH
Q 047767 596 CRVHGNEI------------IGRR-VANILMELEPVDFAVYSQVSNFY-SEIGEFEVSMQI 642 (666)
Q Consensus 596 ~~~~~~~~------------~a~~-~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~ 642 (666)
...+|..+ +... +.+.+-+..|-.-.-|+.|..+| ...+++-+|..+
T Consensus 1064 Lfecg~l~~L~~fpfigl~~eve~~l~esaaRs~~~mk~nyYelLYAfh~~RhN~Rkaatv 1124 (1480)
T KOG4521|consen 1064 LFECGELEALATFPFIGLEQEVEDFLRESAARSSPSMKKNYYELLYAFHVARHNFRKAATV 1124 (1480)
T ss_pred HHhccchHHHhhCCccchHHHHHHHHHHHHhhcCccccccHHHHHHHHHHhhcchhHHHHH
Confidence 65555543 2333 44444455555544555555554 567888888776
No 415
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=55.14 E-value=75 Score=23.45 Aligned_cols=36 Identities=8% Similarity=-0.001 Sum_probs=20.4
Q ss_pred ccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChH
Q 047767 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295 (666)
Q Consensus 259 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 295 (666)
..|+.+.|+.++..++ +.+..|..++.++-..|.-+
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~ 83 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHE 83 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchh
Confidence 3455556666666555 55556666666665555443
No 416
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=55.09 E-value=19 Score=24.53 Aligned_cols=30 Identities=20% Similarity=0.251 Sum_probs=15.5
Q ss_pred CHHHHHHHHHHhcCCCcHHHHHHHHHHhHH
Q 047767 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 546 (666)
|-...-.++.++...|++++|.++++.+..
T Consensus 22 D~~NhLqvI~gllqlg~~~~a~eYi~~~~~ 51 (62)
T PF14689_consen 22 DFLNHLQVIYGLLQLGKYEEAKEYIKELSK 51 (62)
T ss_dssp HHHHHHHHHHHHHHTT-HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 333444455555566666666655555543
No 417
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=54.83 E-value=2.4e+02 Score=28.33 Aligned_cols=56 Identities=20% Similarity=0.373 Sum_probs=30.0
Q ss_pred HHHHHHhhCCHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC
Q 047767 458 LMDAYSRCGHIELSHQVFEKIPSP---NVVCFTSIMNGYSRNGMGREALDMLEVMIQRG 513 (666)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g 513 (666)
|+.-|...|++.+|.+.++++--| ..+.+.+++.+.-+.|+-...+.++++.-..|
T Consensus 515 LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sg 573 (645)
T KOG0403|consen 515 LLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSG 573 (645)
T ss_pred HHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 445555566666666666555433 34455555555555555555555555544443
No 418
>KOG4077 consensus Cytochrome c oxidase, subunit Va/COX6 [Energy production and conversion]
Probab=54.76 E-value=71 Score=25.45 Aligned_cols=58 Identities=16% Similarity=0.285 Sum_probs=40.1
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 047767 502 ALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561 (666)
Q Consensus 502 a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 561 (666)
..+-++....-.+.|+......-+.+|.+.+++..|..+|+-++.+ ..+....|..++
T Consensus 68 vrkglN~l~~yDlVP~pkvIEaaLRA~RRvNDfa~aVRilE~iK~K--~g~~k~~Y~y~v 125 (149)
T KOG4077|consen 68 VRKGLNNLFDYDLVPSPKVIEAALRACRRVNDFATAVRILEAIKDK--CGAQKQVYPYYV 125 (149)
T ss_pred HHHHHHhhhccccCCChHHHHHHHHHHHHhccHHHHHHHHHHHHHh--cccHHHHHHHHH
Confidence 3444555566667888888888888888888888888888888765 223333455544
No 419
>KOG4814 consensus Uncharacterized conserved protein [Function unknown]
Probab=54.75 E-value=37 Score=35.29 Aligned_cols=61 Identities=7% Similarity=-0.156 Sum_probs=42.1
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
+.-.|....+.|.|.++++++-+.+|.++-.-.....+....|+-++|+.......+.-.+
T Consensus 400 l~~CYL~L~QLD~A~E~~~EAE~~d~~~~l~q~~~~~~~~~E~~Se~AL~~~~~~~s~~~~ 460 (872)
T KOG4814|consen 400 LQVCYLKLEQLDNAVEVYQEAEEVDRQSPLCQLLMLQSFLAEDKSEEALTCLQKIKSSEDE 460 (872)
T ss_pred HHHHHhhHHHHHHHHHHHHHHHhhccccHHHHHHHHHHHHHhcchHHHHHHHHHHHhhhcc
Confidence 3334556667777888888877777777666666667777777777887777766654443
No 420
>PF11846 DUF3366: Domain of unknown function (DUF3366); InterPro: IPR021797 This domain is functionally uncharacterised. This domain is found in bacteria. This presumed domain is about 200 amino acids in length.
Probab=54.26 E-value=40 Score=29.69 Aligned_cols=57 Identities=12% Similarity=0.001 Sum_probs=41.2
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
+.......+.+......+.+.+.....|++..|..++.++...|+.++|..+.+++.
T Consensus 115 l~~~~~~~~~~~l~~~~~~a~~~l~~~P~~~~~~~~a~~l~~~G~~~eA~~~~~~~~ 171 (193)
T PF11846_consen 115 LLLARLPPDPEMLEAYIEWAERLLRRRPDPNVYQRYALALALLGDPEEARQWLARAR 171 (193)
T ss_pred HHhhcCCCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 333345666666555555555544668899999999999999999999988887765
No 421
>KOG3364 consensus Membrane protein involved in organellar division [Cell wall/membrane/envelope biogenesis]
Probab=54.17 E-value=67 Score=26.08 Aligned_cols=68 Identities=10% Similarity=-0.010 Sum_probs=49.4
Q ss_pred CCCHHHHHHHHHHHHhhC---ChHHHHHHHHHHHh-cCCCC-cchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 583 GGDCMMWSSLLRSCRVHG---NEIIGRRVANILME-LEPVD-FAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.+...+-..+..++.+.. +..+.+.+++.+.+ -.|.. ....+-|+-.+++.|+|++++++.+.+.+..
T Consensus 29 ~~s~~s~f~lAwaLV~S~~~~dv~~GI~iLe~l~~~~~~~~rRe~lyYLAvg~yRlkeY~~s~~yvd~ll~~e 101 (149)
T KOG3364|consen 29 DVSKQSQFNLAWALVRSRDTEDVQEGIVILEDLLKSAHPERRRECLYYLAVGHYRLKEYSKSLRYVDALLETE 101 (149)
T ss_pred cchHHHHHHHHHHHHcccchHHHHHhHHHHHHHhhhcCcccchhhhhhhHHHHHHHhhHHHHHHHHHHHHhhC
Confidence 444455555666666554 57778999999997 44443 4556678889999999999999998887643
No 422
>PF09477 Type_III_YscG: Bacterial type II secretion system chaperone protein (type_III_yscG); InterPro: IPR013348 YscG is a molecular chaperone for YscE, where both are part of the type III secretion system that in Yersinia is designated Ysc (Yersinia secretion). The secretion system delivers effector proteins, designated Yops (Yersinia outer proteins), in Yersinia. This entry consists of YscG from Yersinia, and functionally equivalent type III secretion proteins in other species: e.g. AscG in Aeromonas and LscG in Photorhabdus luminescens.; GO: 0009405 pathogenesis; PDB: 3PH0_D 2UWJ_G 2P58_C.
Probab=54.04 E-value=1e+02 Score=23.85 Aligned_cols=81 Identities=15% Similarity=0.091 Sum_probs=49.7
Q ss_pred CCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHH
Q 047767 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM 202 (666)
Q Consensus 123 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 202 (666)
....++|..+.+.+...+- ....+--..+..+.+.|++++|+..=.....||...|-+|-. .+.|-.+++...+.++
T Consensus 19 ~HcH~EA~tIa~wL~~~~~-~~E~v~lIr~~sLmNrG~Yq~ALl~~~~~~~pdL~p~~AL~a--~klGL~~~~e~~l~rl 95 (116)
T PF09477_consen 19 HHCHQEANTIADWLEQEGE-MEEVVALIRLSSLMNRGDYQEALLLPQCHCYPDLEPWAALCA--WKLGLASALESRLTRL 95 (116)
T ss_dssp TT-HHHHHHHHHHHHHTTT-THHHHHHHHHHHHHHTT-HHHHHHHHTTS--GGGHHHHHHHH--HHCT-HHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHhhHHHHHHHHhcccCCCccHHHHHHHHH--HhhccHHHHHHHHHHH
Confidence 3467788888887777653 333334444556778888888855555555678777766654 4677778888777777
Q ss_pred HHcC
Q 047767 203 KAEG 206 (666)
Q Consensus 203 ~~~~ 206 (666)
..+|
T Consensus 96 a~~g 99 (116)
T PF09477_consen 96 ASSG 99 (116)
T ss_dssp CT-S
T ss_pred HhCC
Confidence 6654
No 423
>COG2912 Uncharacterized conserved protein [Function unknown]
Probab=53.79 E-value=55 Score=30.23 Aligned_cols=55 Identities=18% Similarity=0.191 Sum_probs=36.8
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.++...++++.|....++.+.++|.++.-+..-|-+|.+.|-+.-|++-++...+
T Consensus 189 ~~~~~e~~~~~al~~~~r~l~l~P~dp~eirDrGliY~ql~c~~vAl~dl~~~~~ 243 (269)
T COG2912 189 AALLRELQWELALRVAERLLDLNPEDPYEIRDRGLIYAQLGCYHVALEDLSYFVE 243 (269)
T ss_pred HHHHHhhchHHHHHHHHHHHhhCCCChhhccCcHHHHHhcCCchhhHHHHHHHHH
Confidence 3455666777777777777777777766666677777777777777666665444
No 424
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=53.69 E-value=31 Score=32.11 Aligned_cols=59 Identities=12% Similarity=0.124 Sum_probs=30.3
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHH
Q 047767 566 RAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 566 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 624 (666)
+.|+.++|..+|+... ..| ++.....++...-..++.-+|-..|-+++...|.+..+..
T Consensus 128 ~~Gk~ekA~~lfeHAlalaP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP~nseALv 188 (472)
T KOG3824|consen 128 KDGKLEKAMTLFEHALALAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISPGNSEALV 188 (472)
T ss_pred hccchHHHHHHHHHHHhcCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCCCchHHHh
Confidence 5566666666665322 333 3333333333334445556666666666666666555443
No 425
>KOG4279 consensus Serine/threonine protein kinase [Signal transduction mechanisms]
Probab=53.34 E-value=2.9e+02 Score=29.79 Aligned_cols=181 Identities=14% Similarity=0.247 Sum_probs=91.4
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHH----------HHHHHhchhhhhcccchhhHHHHHHHHHHhC--CCC
Q 047767 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEV----------TLSTTLKALSVSASANLGSCRLLHCCAIKSG--FES 450 (666)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~----------~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--~~~ 450 (666)
...++-.|....+++..+++.+.++.- ||.. .|...+.- ....||-++|+...--+.+.. +.|
T Consensus 204 V~nlmlSyRDvQdY~amirLVe~Lk~i---P~t~~vve~~nv~f~YaFALNR--RNr~GDRakAL~~~l~lve~eg~vap 278 (1226)
T KOG4279|consen 204 VSNLMLSYRDVQDYDAMIRLVEDLKRI---PDTLKVVETHNVRFHYAFALNR--RNRPGDRAKALNTVLPLVEKEGPVAP 278 (1226)
T ss_pred HHHHHhhhccccchHHHHHHHHHHHhC---cchhhhhccCceEEEeeehhcc--cCCCccHHHHHHHHHHHHHhcCCCCC
Confidence 345556666677777777777777652 3221 13333333 444556666655544333322 222
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH---HHHHHHH
Q 047767 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT---FLCVLAG 527 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~---~~~l~~~ 527 (666)
| +||-+|++ |+.|- +-..|...+..+.|.+.|++.-+ +.|+..+ +..|+.+
T Consensus 279 D---------m~Cl~GRI------YKDmF---------~~S~ytDa~s~~~a~~WyrkaFe--veP~~~sGIN~atLL~a 332 (1226)
T KOG4279|consen 279 D---------MYCLCGRI------YKDMF---------IASNYTDAESLNHAIEWYRKAFE--VEPLEYSGINLATLLRA 332 (1226)
T ss_pred c---------eeeeechh------hhhhh---------hccCCcchhhHHHHHHHHHHHhc--cCchhhccccHHHHHHH
Confidence 2 23333432 22211 11123334445566677776666 6676542 4444443
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRR 607 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 607 (666)
-.+. ++...++ +.- |+ .|-..+.+.|.+++-.++++-.. .+.+-.-.+|+.+|++
T Consensus 333 aG~~--Fens~El----q~I-gm--------kLn~LlgrKG~leklq~YWdV~~----------y~~asVLAnd~~kaiq 387 (1226)
T KOG4279|consen 333 AGEH--FENSLEL----QQI-GM--------KLNSLLGRKGALEKLQEYWDVAT----------YFEASVLANDYQKAIQ 387 (1226)
T ss_pred hhhh--ccchHHH----HHH-HH--------HHHHHhhccchHHHHHHHHhHHH----------hhhhhhhccCHHHHHH
Confidence 3221 2211111 111 11 23344567777777766664321 2345556678888899
Q ss_pred HHHHHHhcCCCC
Q 047767 608 VANILMELEPVD 619 (666)
Q Consensus 608 ~~~~~~~~~p~~ 619 (666)
+.+.+.+++|+.
T Consensus 388 Aae~mfKLk~P~ 399 (1226)
T KOG4279|consen 388 AAEMMFKLKPPV 399 (1226)
T ss_pred HHHHHhccCCce
Confidence 999999988864
No 426
>PF13934 ELYS: Nuclear pore complex assembly
Probab=53.04 E-value=1.6e+02 Score=26.80 Aligned_cols=105 Identities=17% Similarity=0.182 Sum_probs=55.2
Q ss_pred HHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHH
Q 047767 486 FTSIMNGYS--RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563 (666)
Q Consensus 486 ~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 563 (666)
|..+++++- .++++++|.+++-.- .+.|+.. .-++.++...|+.+.|..++..+... -.+......+...
T Consensus 79 ~~~~~~g~W~LD~~~~~~A~~~L~~p---s~~~~~~--~~Il~~L~~~~~~~lAL~y~~~~~p~---l~s~~~~~~~~~~ 150 (226)
T PF13934_consen 79 YIKFIQGFWLLDHGDFEEALELLSHP---SLIPWFP--DKILQALLRRGDPKLALRYLRAVGPP---LSSPEALTLYFVA 150 (226)
T ss_pred HHHHHHHHHHhChHhHHHHHHHhCCC---CCCcccH--HHHHHHHHHCCChhHHHHHHHhcCCC---CCCHHHHHHHHHH
Confidence 445555543 445666666665221 1222222 13556666677777777777665311 1112223333333
Q ss_pred HHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhh
Q 047767 564 LGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVH 599 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~ 599 (666)
...+.+.||..+.+.....-....+..++..+...
T Consensus 151 -La~~~v~EAf~~~R~~~~~~~~~l~e~l~~~~~~~ 185 (226)
T PF13934_consen 151 -LANGLVTEAFSFQRSYPDELRRRLFEQLLEHCLEE 185 (226)
T ss_pred -HHcCCHHHHHHHHHhCchhhhHHHHHHHHHHHHHH
Confidence 55677777777777666322345666666665543
No 427
>PF14863 Alkyl_sulf_dimr: Alkyl sulfatase dimerisation; PDB: 2YHE_C 2CG2_A 2CG3_A 2CFU_A 2CFZ_A.
Probab=52.68 E-value=64 Score=26.59 Aligned_cols=65 Identities=8% Similarity=0.040 Sum_probs=44.3
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchH
Q 047767 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638 (666)
Q Consensus 571 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 638 (666)
+.|.++.+-|- ...............|++..|.++.+.++..+|+|..+-...+.+|.+.|...+
T Consensus 58 ~~A~~~v~l~G---G~d~vl~~A~~~~~~gd~~wA~~L~d~l~~adp~n~~ar~l~A~al~~lg~~~~ 122 (141)
T PF14863_consen 58 EEAKRYVELAG---GADKVLERAQAALAAGDYQWAAELLDHLVFADPDNEEARQLKADALEQLGYQSE 122 (141)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHCT-HHHHHHHHHHHHHH-TT-HHHHHHHHHHHHHHHHH-S
T ss_pred HHHHHHHHHcC---CHHHHHHHHHHHHHCCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHhcc
Confidence 44555555442 333444455567788999999999999999999999988888888877765443
No 428
>KOG0530 consensus Protein farnesyltransferase, alpha subunit/protein geranylgeranyltransferase type I, alpha subunit [Posttranslational modification, protein turnover, chaperones]
Probab=52.47 E-value=1.9e+02 Score=26.68 Aligned_cols=72 Identities=7% Similarity=0.207 Sum_probs=39.3
Q ss_pred CHHHHHHHHHHHHhhCChH-HHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCcCCC
Q 047767 585 DCMMWSSLLRSCRVHGNEI-IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDIG 656 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ 656 (666)
+-..|..--......|+.. .-+++.+.++..+..+..+|..--|++..-+.+++-+.+..++.+..+.+..+
T Consensus 111 NYQvWHHRr~ive~l~d~s~rELef~~~~l~~DaKNYHaWshRqW~~r~F~~~~~EL~y~~~Lle~Di~NNSA 183 (318)
T KOG0530|consen 111 NYQVWHHRRVIVELLGDPSFRELEFTKLMLDDDAKNYHAWSHRQWVLRFFKDYEDELAYADELLEEDIRNNSA 183 (318)
T ss_pred chhHHHHHHHHHHHhcCcccchHHHHHHHHhccccchhhhHHHHHHHHHHhhHHHHHHHHHHHHHHhhhccch
Confidence 4444443333333344444 44556666666666666666666666666666666666666666555554443
No 429
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.37 E-value=19 Score=28.89 Aligned_cols=32 Identities=13% Similarity=0.332 Sum_probs=21.6
Q ss_pred cCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 047767 87 KFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120 (666)
Q Consensus 87 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 120 (666)
..|.-.+|..+|++|++.|-+|| .|+.|+..+
T Consensus 107 ~ygsk~DaY~VF~kML~~G~pPd--dW~~Ll~~a 138 (140)
T PF11663_consen 107 AYGSKTDAYAVFRKMLERGNPPD--DWDALLKEA 138 (140)
T ss_pred hhccCCcHHHHHHHHHhCCCCCc--cHHHHHHHh
Confidence 34566777888888888887665 466666543
No 430
>PF11663 Toxin_YhaV: Toxin with endonuclease activity YhaV; InterPro: IPR021679 YhaV causes reversible bacteriostasis and is part of a toxin-antitoxin system in Escherichia coli along with PrlF. The toxicity of YhaV is counteracted by PrlF by the formation of a tight complex which binds to the promoter of the prlF-yhaV operon. In vitro, YhaV also has endonuclease activity [].
Probab=52.17 E-value=19 Score=28.87 Aligned_cols=33 Identities=24% Similarity=0.418 Sum_probs=26.2
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047767 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528 (666)
Q Consensus 494 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 528 (666)
...|.-.+|-.+|+.|.+.|-+||. |+.|+..+
T Consensus 106 R~ygsk~DaY~VF~kML~~G~pPdd--W~~Ll~~a 138 (140)
T PF11663_consen 106 RAYGSKTDAYAVFRKMLERGNPPDD--WDALLKEA 138 (140)
T ss_pred hhhccCCcHHHHHHHHHhCCCCCcc--HHHHHHHh
Confidence 4457788899999999999999985 66666544
No 431
>PF08424 NRDE-2: NRDE-2, necessary for RNA interference; InterPro: IPR013633 This is domain is found in eukaryotic proteins of unknown function.
Probab=52.12 E-value=2.3e+02 Score=27.46 Aligned_cols=75 Identities=11% Similarity=0.129 Sum_probs=45.5
Q ss_pred hhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHHHHh---cCChHHH
Q 047767 499 GREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDMLGR---AGILDKA 573 (666)
Q Consensus 499 ~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~---~g~~~~A 573 (666)
.+.-+.++++..+. .|+. .....++..+.+..+.+...+-++++... .| +...|...++.... .-.+++.
T Consensus 47 ~E~klsilerAL~~--np~~~~L~l~~l~~~~~~~~~~~l~~~we~~l~~---~~~~~~LW~~yL~~~q~~~~~f~v~~~ 121 (321)
T PF08424_consen 47 AERKLSILERALKH--NPDSERLLLGYLEEGEKVWDSEKLAKKWEELLFK---NPGSPELWREYLDFRQSNFASFTVSDV 121 (321)
T ss_pred HHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH---CCCChHHHHHHHHHHHHHhccCcHHHH
Confidence 34556777777775 4443 35666677777777777777777777764 34 36666666655433 2234555
Q ss_pred HHHHH
Q 047767 574 EELLQ 578 (666)
Q Consensus 574 ~~~~~ 578 (666)
..+|.
T Consensus 122 ~~~y~ 126 (321)
T PF08424_consen 122 RDVYE 126 (321)
T ss_pred HHHHH
Confidence 55544
No 432
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=51.69 E-value=2.5e+02 Score=27.76 Aligned_cols=54 Identities=17% Similarity=0.230 Sum_probs=34.4
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCC-CcchHHHHHHHHh-hcCCchHHHHHHHHHH
Q 047767 594 RSCRVHGNEIIGRRVANILMELEPV-DFAVYSQVSNFYS-EIGEFEVSMQIRETAL 647 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~ 647 (666)
....+.|-+..|.+..+-++.++|. ||......+..|+ +.++++--+++.+...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 3455667777777777777777777 6666666665554 4566665666655443
No 433
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=51.32 E-value=52 Score=20.97 Aligned_cols=34 Identities=26% Similarity=0.172 Sum_probs=25.2
Q ss_pred HHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHH
Q 047767 288 YADYDLIFDALELFFRMQLCRKRPSIRSFVEFLN 321 (666)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 321 (666)
..+.|-.+++..++++|.+.|+..++..|..++.
T Consensus 12 Ak~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 12 AKRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 4566777788888888888888777777766654
No 434
>cd08819 CARD_MDA5_2 Caspase activation and recruitment domain found in MDA5, second repeat. Caspase activation and recruitment domain (CARD) found in MDA5 (melanoma-differentiation-associated gene 5), second repeat. MDA5, also known as IFIH1, contains two N-terminal CARD domains and a C-terminal RNA helicase domain. MDA5 is a cytoplasmic DEAD box RNA helicase that plays an important role in host antiviral response by sensing incoming viral RNA. Upon activation, the signal is transferred to downstream pathways via the adaptor molecule IPS-1 (MAVS, VISA, CARDIF), leading to the induction of type I interferons. Although very similar in sequence, MDA5 recognizes different sets of viruses compared to RIG-I, a related RNA helicase. MDA5 associates with IPS-1 through a CARD-CARD interaction. In general, CARDs are death domains (DDs) found associated with caspases. They are known to be important in the signaling pathways for apoptosis, inflammation, and host-defense mechanisms. DDs are protei
Probab=51.31 E-value=93 Score=22.97 Aligned_cols=38 Identities=5% Similarity=0.016 Sum_probs=23.8
Q ss_pred hcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHH
Q 047767 361 KCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDA 399 (666)
Q Consensus 361 ~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a 399 (666)
..|+.+.|..+++.++ +.+..|...+.++...|+-+-|
T Consensus 48 ~~g~~~~ar~LL~~L~-rg~~aF~~Fl~aLreT~~~~LA 85 (88)
T cd08819 48 NHGNESGARELLKRIV-QKEGWFSKFLQALRETEHHELA 85 (88)
T ss_pred ccCcHHHHHHHHHHhc-cCCcHHHHHHHHHHHcCchhhh
Confidence 4466666666666666 6666666667666666654443
No 435
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=50.29 E-value=63 Score=26.85 Aligned_cols=65 Identities=14% Similarity=0.081 Sum_probs=44.8
Q ss_pred HHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCCh
Q 047767 96 YLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161 (666)
Q Consensus 96 ~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 161 (666)
++.+.+++.|+++++. -..+++.+...++.-.|.++++.+.+.+...+..|-..-+..+...|-+
T Consensus 7 ~~~~~lk~~glr~T~q-R~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~Glv 71 (145)
T COG0735 7 DAIERLKEAGLRLTPQ-RLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAGLV 71 (145)
T ss_pred HHHHHHHHcCCCcCHH-HHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCCCE
Confidence 3455666777776544 3566777777777788888888888887776666665566666666543
No 436
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=50.17 E-value=1.6e+02 Score=27.78 Aligned_cols=77 Identities=9% Similarity=0.012 Sum_probs=54.6
Q ss_pred HHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----------cCChHH
Q 047767 298 LELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK----------CNVIES 367 (666)
Q Consensus 298 ~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----------~~~~~~ 367 (666)
.++++.|...++.|.-..|..+.-.+...=.+..+..+|+.+.. |+.-+..|+..|+. .|++..
T Consensus 263 ~EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s------D~~rfd~Ll~iCcsmlil~Re~il~~DF~~ 336 (370)
T KOG4567|consen 263 EELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS------DPQRFDFLLYICCSMLILVRERILEGDFTV 336 (370)
T ss_pred HHHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc------ChhhhHHHHHHHHHHHHHHHHHHHhcchHH
Confidence 46777788888888888888888778888888888888888776 55556666666654 466666
Q ss_pred HHHHhccCCCCCc
Q 047767 368 SVAVFESAPGRSL 380 (666)
Q Consensus 368 a~~~~~~~~~~~~ 380 (666)
..++++.-+.-|.
T Consensus 337 nmkLLQ~yp~tdi 349 (370)
T KOG4567|consen 337 NMKLLQNYPTTDI 349 (370)
T ss_pred HHHHHhcCCCCCH
Confidence 6666665554443
No 437
>PF11838 ERAP1_C: ERAP1-like C-terminal domain; InterPro: IPR024571 This entry represents the uncharacterised C-terminal domain of zinc metallopeptidases belonging to MEROPS peptidase family M1 (aminopeptidase N, clan MA), with a single member characterised in Streptomyces lividans: aminopeptidase G []. The rest of the members of this family are identified as aminopeptidase N of the actinomycete-type. The spectrum of activity may differ somewhat from the aminopeptidase N clade of Escherichia coli and most other proteobacteria, which are well separated phylogenetically within the M1 family. ; PDB: 3MDJ_A 2YD0_A 3QNF_C 3RJO_A 1Z5H_A 3Q7J_A 1Z1W_A 3SE6_B.
Probab=50.06 E-value=2.5e+02 Score=27.16 Aligned_cols=186 Identities=10% Similarity=0.042 Sum_probs=0.0
Q ss_pred HHhHhcCC--ChhhHHHHhhcC--CCCCchhHHHHHHHhhcCC-----ChhhHHHHHHH---------HHhCCCCCC--c
Q 047767 51 IDDFVKSG--HLNSAKKLFDEM--PARDMVTYNLLISGCGKFR-----HPKQALYLYDE---------MVSHGIKES--A 110 (666)
Q Consensus 51 ~~~~~~~g--~~~~A~~~~~~~--~~~~~~~~~~ll~~~~~~~-----~~~~a~~~~~~---------m~~~~~~~~--~ 110 (666)
+-++++.| .+..+..++..+ .+++...|..++..+.... ..+.....|+. +.+.|..+. .
T Consensus 45 ~~al~~~g~~~~~~~l~l~~~~~~~E~~~~vw~~~~~~l~~l~~~l~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~~~ 124 (324)
T PF11838_consen 45 LFALARAGRLSYSDFLDLLEYLLPNETDYVVWSTALSNLSSLRNRLYAEDEELQEAFRKFVRRLLEPLYERLGWDPRPGE 124 (324)
T ss_dssp HHHHHHTTSS-HHHHHHHHGGG-GT--SHHHHHHHHHHHHHHHHHHCSC-HHHHHHHHHHHHHHHHHHHHH--SSSS--S
T ss_pred HHHHHHcCCCCHHHHHHHHHHhccCCCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHcCCCCcccc
Q ss_pred ccHHHHHHHH-HcCCC-----hHHHHHHHHHHHHhcC----CCchhhhhHHHHHhHhcCChhHHHHhhccCCC-CCcccH
Q 047767 111 STFSSVLSVC-SNAGF-----YTEGIQIHCRVLSLGF----GLNLYIGSPLVDLYMRMGPSVRALDLFDELPE-RNLATW 179 (666)
Q Consensus 111 ~~~~~ll~~~-~~~~~-----~~~a~~~~~~~~~~~~----~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-~~~~~~ 179 (666)
......++.. ....- .+.|.+.++.....+. ..++.....++....+.|+.+.-..+++.... ++....
T Consensus 125 ~~~~~~lr~~~~~~a~~~~~~~~~a~~~~~~~~~~~~~~~~~i~~dlr~~v~~~~~~~g~~~~~~~l~~~~~~~~~~~~k 204 (324)
T PF11838_consen 125 DHNDRLLRALLLSLACGDPECVAEARELFKAWLDGNDSPESSIPPDLRWAVYCAGVRNGDEEEWDFLWELYKNSTSPEEK 204 (324)
T ss_dssp CHHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHHTTT-TTSTS-HHHHHHHHHHHTTS--HHHHHHHHHHHHTTSTHHHH
T ss_pred cHHHHHHHHHHHHHhccchhHHHHHHHHHHHHhcCCcccccccchHHHHHHHHHHHHHhhHhhHHHHHHHHhccCCHHHH
Q ss_pred HHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHh-cccCChHHHHHHHHH
Q 047767 180 NLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGC-SIGMLLDEGKQLHSH 236 (666)
Q Consensus 180 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~-~~~~~~~~a~~~~~~ 236 (666)
..++.+++...+.+...++++.....+..++...+..+.... ......+.+.+.+..
T Consensus 205 ~~~l~aLa~~~d~~~~~~~l~~~l~~~~v~~~d~~~~~~~~~~~~~~~~~~~~~~~~~ 262 (324)
T PF11838_consen 205 RRLLSALACSPDPELLKRLLDLLLSNDKVRSQDIRYVLAGLASSNPVGRDLAWEFFKE 262 (324)
T ss_dssp HHHHHHHTT-S-HHHHHHHHHHHHCTSTS-TTTHHHHHHHHH-CSTTCHHHHHHHHHH
T ss_pred HHHHHhhhccCCHHHHHHHHHHHcCCcccccHHHHHHHHHHhcCChhhHHHHHHHHHH
No 438
>cd00280 TRFH Telomeric Repeat binding Factor or TTAGGG Repeat binding Factor, central (dimerization) domain Homology; TRFH. Telomeres are protein/DNA complexes that make up the physical ends of eukaryotic linear chromosomes and are essential for chromosome stability, protecting the chromosome ends from degradation and end-to-end fusion. Proteins TRF1, TRF2 and Taz1 bind telomeric DNA and are also involved in recruiting interacting proteins, TIN2, and Rap1, to the telomeres. It has also been demonstrated that PARP1 associates with TRF2 and is capable of poly(ADP-ribosyl)ation of TRF2, which affects binding of TRF2 to telomeric DNA. TRF1, TRF2 and Taz1 proteins contain three functional domains: an N-terminal acidic domain, a central TRF-specific/dimerization domain, and a C-terminal DNA binding domain with a single Myb-like repeat. Homodimerization, a prerequisite to DNA binding, results in the juxtaposition of two Myb DNA binding domains.
Probab=49.87 E-value=79 Score=27.23 Aligned_cols=24 Identities=25% Similarity=0.297 Sum_probs=12.7
Q ss_pred HHHhcCChHHHHHHHHhCCCCCCH
Q 047767 563 MLGRAGILDKAEELLQQTPGGGDC 586 (666)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~~~~~~ 586 (666)
.|.+.|.+++|.+++++....|+.
T Consensus 120 VCm~~g~Fk~A~eiLkr~~~d~~~ 143 (200)
T cd00280 120 VCMENGEFKKAEEVLKRLFSDPES 143 (200)
T ss_pred HHHhcCchHHHHHHHHHHhcCCCc
Confidence 445555555555555555444433
No 439
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=49.52 E-value=33 Score=32.09 Aligned_cols=77 Identities=6% Similarity=-0.007 Sum_probs=50.5
Q ss_pred CCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHH-HHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 047767 551 DADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSS-LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627 (666)
Q Consensus 551 ~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~-l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 627 (666)
.-|+..|...+.-..+.|.+.+.-.++.+.. ..| ++..|-. -..-+...++++.+..++.+.+..+|++|..|....
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~~glR~N~~~p~iw~eyf 183 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFLKGLRMNSRSPRIWIEYF 183 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHHhhhccCCCCchHHHHHH
Confidence 3445566555555455566666666666544 444 5556533 112245678999999999999999999998886543
No 440
>PF11848 DUF3368: Domain of unknown function (DUF3368); InterPro: IPR021799 This domain is functionally uncharacterised. This domain is found in bacteria and archaea. This presumed domain is about 50 amino acids in length.
Probab=48.70 E-value=69 Score=20.42 Aligned_cols=33 Identities=21% Similarity=0.238 Sum_probs=24.5
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047767 494 SRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526 (666)
Q Consensus 494 ~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 526 (666)
.+.|-.+++..++++|.+.|+..+...|..++.
T Consensus 13 k~~GlI~~~~~~l~~l~~~g~~is~~l~~~~L~ 45 (48)
T PF11848_consen 13 KRRGLISEVKPLLDRLQQAGFRISPKLIEEILR 45 (48)
T ss_pred HHcCChhhHHHHHHHHHHcCcccCHHHHHHHHH
Confidence 456777788888888888888777777766654
No 441
>KOG2758 consensus Translation initiation factor 3, subunit e (eIF-3e) [Translation, ribosomal structure and biogenesis]
Probab=46.54 E-value=2.7e+02 Score=26.58 Aligned_cols=164 Identities=12% Similarity=0.056 Sum_probs=93.2
Q ss_pred HHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCC-CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC
Q 047767 439 LHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD 517 (666)
Q Consensus 439 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~ 517 (666)
+++.+..+++-+.......-++.+.+.+..+-+..+++... ..+.. +.+. .+-.+++.-++++.+. +.|=
T Consensus 22 LlEFl~~r~iy~~keLle~k~~ll~~TNMiDy~md~~k~l~~sed~p--~a~~------ekr~~Vla~lkeLe~e-v~pi 92 (432)
T KOG2758|consen 22 LLEFLSLRQIYDEKELLEAKLQLLNKTNMIDYVMDTYKNLHTSEDMP--NALV------EKRTEVLAELKELEEE-VAPI 92 (432)
T ss_pred HHHHhhhhccCCHHHHHHHHHHHHcccchHHHHHHHHhcccccccch--HHHH------HHHHHHHHHHHHHHHH-HHHH
Confidence 44555566666666666677777778888888888887763 11111 1111 1122233333333332 1111
Q ss_pred HHHH--HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHH---hCCCCCCHHHHHH
Q 047767 518 KVTF--LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQ---QTPGGGDCMMWSS 591 (666)
Q Consensus 518 ~~~~--~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~---~~~~~~~~~~~~~ 591 (666)
...+ --++.... .-.+....++.+.+.+++.|+ ..+.-.+......+|++..|-.++- .....||....++
T Consensus 93 v~~le~Pd~~~~~~---~~k~~~~~l~~L~e~ynf~~e~i~~lykyakfqyeCGNY~gAs~yLY~~r~l~~~~d~n~lsa 169 (432)
T KOG2758|consen 93 VKVLENPDLIAALR---SDKDRVQNLQHLQEHYNFTPERIETLYKYAKFQYECGNYSGASDYLYFYRALVSDPDRNYLSA 169 (432)
T ss_pred HHHHcCHHHHHHHH---hhhhHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhccCcccHHHHHHHHHHhcCCcchhhHHH
Confidence 1000 00111111 123336788888888899998 7777778888889999999888753 4445556544333
Q ss_pred HHHHH---HhhCChHHHHHHHHHHHh
Q 047767 592 LLRSC---RVHGNEIIGRRVANILME 614 (666)
Q Consensus 592 l~~~~---~~~~~~~~a~~~~~~~~~ 614 (666)
+-+-+ .-..+++.|.+-+.++.+
T Consensus 170 lwGKlASEIL~qnWd~A~edL~rLre 195 (432)
T KOG2758|consen 170 LWGKLASEILTQNWDGALEDLTRLRE 195 (432)
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHH
Confidence 32222 234588888888877766
No 442
>PF07575 Nucleopor_Nup85: Nup85 Nucleoporin; InterPro: IPR011502 This is a family of nucleoporins conserved from yeast to human. Nup85 Nucleoporin is an essential component of the nuclear pore complex (NPC) that seems to be required for NPC assembly and maintenance. As part of the NPC Nup107-160 subcomplex plays a role in RNA export and in tethering NUP98/Nup98 and NUP153 to the nucleus. The Nup107-160 complex seems to be required for spindle assembly during mitosis. NUP85 is required for membrane clustering of CCL2-activated CCR2. Seems to be involved in CCR2-mediated chemotaxis of monocytes and may link activated CCR2 to the phosphatidyl-inositol-3-kinase-Rac-lammellipodium protrusion cascade [, , ]. ; PDB: 3F3F_D 3F3P_G 3F3G_G 3EWE_B.
Probab=46.35 E-value=4e+02 Score=28.49 Aligned_cols=75 Identities=16% Similarity=0.103 Sum_probs=29.7
Q ss_pred HHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHH
Q 047767 264 IEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340 (666)
Q Consensus 264 ~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 340 (666)
.....++.+.+-++...-.-++..|.+.|-.+.+.++.+.+-..-. ...-|...+.-+.+.|+...+..+...+.
T Consensus 391 ~~i~~lL~~~p~~t~~~~~k~l~iC~~~~L~~~a~~I~~~~~~~~~--~~~~~g~AL~~~~ra~d~~~v~~i~~~ll 465 (566)
T PF07575_consen 391 ERIEELLPRVPLDTNDDAEKLLEICAELGLEDVAREICKILGQRLL--KEGRYGEALSWFIRAGDYSLVTRIADRLL 465 (566)
T ss_dssp HHHHHHGGG----SHHHHHHHHHHHHHHT-HHHHHHHHHHHHHHHH--HHHHHHHHHHHHH----------------
T ss_pred HHHHHHHhhCCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH--HCCCHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334455555544555555666666667776666666665533322 12345566666666666655555544444
No 443
>PF14689 SPOB_a: Sensor_kinase_SpoOB-type, alpha-helical domain; PDB: 1F51_C 2FTK_B 1IXM_B.
Probab=46.06 E-value=28 Score=23.73 Aligned_cols=44 Identities=18% Similarity=0.200 Sum_probs=22.3
Q ss_pred HHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 047767 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580 (666)
Q Consensus 534 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (666)
++...++++.++.. +-|....-.++.+|...|++++|.++++++
T Consensus 6 ~~~~~~~~~~lR~~---RHD~~NhLqvI~gllqlg~~~~a~eYi~~~ 49 (62)
T PF14689_consen 6 LEELEELIDSLRAQ---RHDFLNHLQVIYGLLQLGKYEEAKEYIKEL 49 (62)
T ss_dssp HHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHTT-HHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH---hHHHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 34444444444432 223333345566667777777777666544
No 444
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.87 E-value=40 Score=31.61 Aligned_cols=38 Identities=13% Similarity=0.260 Sum_probs=29.5
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHH
Q 047767 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215 (666)
Q Consensus 178 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 215 (666)
-||..|....+.||+++|+.++++.++.|+.--..+|.
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFi 296 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFI 296 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHH
Confidence 37788888888888888888888888888765444543
No 445
>PRK10564 maltose regulon periplasmic protein; Provisional
Probab=44.55 E-value=45 Score=31.32 Aligned_cols=42 Identities=14% Similarity=0.245 Sum_probs=34.6
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 047767 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLK 423 (666)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 423 (666)
-|+..|....+.|++++|+.++++.+..|+.--..+|...++
T Consensus 259 Yy~~aI~~AVk~gDi~KAL~LldEAe~LG~~~Ar~tFik~V~ 300 (303)
T PRK10564 259 YFNQAIKQAVKKGDVDKALKLLDEAERLGSTSARSTFISSVK 300 (303)
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCchHHHHHHHHhh
Confidence 378899999999999999999999999998766666655443
No 446
>KOG2659 consensus LisH motif-containing protein [Cytoskeleton]
Probab=43.85 E-value=1.6e+02 Score=26.51 Aligned_cols=91 Identities=19% Similarity=0.242 Sum_probs=0.0
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIP-----DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCM 560 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l 560 (666)
+|.|+--|.-...+.+|-+.| +.+.|+.| +...=..-+......|+.++|++....+... -+.-|...+-.|
T Consensus 29 ~n~LVmnylv~eg~~EaA~~F--a~e~~i~~~~~d~~~~~eR~~Ir~~I~~G~Ie~Aie~in~l~Pe-iLd~n~~l~F~L 105 (228)
T KOG2659|consen 29 LNRLVMNYLVHEGYVEAAEKF--AKESGIKPPSIDLDSMDERLQIRRAIEEGQIEEAIEKVNQLNPE-ILDTNRELFFHL 105 (228)
T ss_pred HHHHHHHHHHhccHHHHHHHh--ccccCCCCccCchhhHhHHHHHHHHHHhccHHHHHHHHHHhChH-HHccchhHHHHH
Q ss_pred HHH----HHhcCChHHHHHHHHh
Q 047767 561 IDM----LGRAGILDKAEELLQQ 579 (666)
Q Consensus 561 ~~~----~~~~g~~~~A~~~~~~ 579 (666)
... +.|.|..++|+++.+.
T Consensus 106 q~q~lIEliR~~~~eeal~F~q~ 128 (228)
T KOG2659|consen 106 QQLHLIELIREGKTEEALEFAQT 128 (228)
T ss_pred HHHHHHHHHHhhhHHHHHHHHHH
No 447
>KOG0545 consensus Aryl-hydrocarbon receptor-interacting protein [Posttranslational modification, protein turnover, chaperones]
Probab=43.34 E-value=2.6e+02 Score=25.56 Aligned_cols=59 Identities=8% Similarity=-0.197 Sum_probs=42.2
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 047767 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG 584 (666)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 584 (666)
.+-+++...|++-++++-..++... .|+ ...|-.-..+.+..-+..+|..=|..+. ..|
T Consensus 235 Ny~QC~L~~~e~yevleh~seiL~~---~~~nvKA~frRakAhaa~Wn~~eA~~D~~~vL~ldp 295 (329)
T KOG0545|consen 235 NYCQCLLKKEEYYEVLEHCSEILRH---HPGNVKAYFRRAKAHAAVWNEAEAKADLQKVLELDP 295 (329)
T ss_pred hHHHHHhhHHHHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHhhcCHHHHHHHHHHHHhcCh
Confidence 3345566788888998888888854 444 6777666777777778888888777655 444
No 448
>KOG2581 consensus 26S proteasome regulatory complex, subunit RPN3/PSMD3 [Posttranslational modification, protein turnover, chaperones]
Probab=43.32 E-value=1.8e+02 Score=28.80 Aligned_cols=134 Identities=11% Similarity=0.027 Sum_probs=0.0
Q ss_pred CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHH--------HHHHhcCChHHHHHHHHhCC-------
Q 047767 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI--------DMLGRAGILDKAEELLQQTP------- 581 (666)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~--------~~~~~~g~~~~A~~~~~~~~------- 581 (666)
+...+..++--+..++++.+|.++-+..... -..-+..++..+. ..|...|+...-..++....
T Consensus 125 ~aY~~lLv~Lfl~d~K~~kea~~~~~~~l~~-i~~~nrRtlD~i~ak~~fy~~l~~E~~~~l~~~rs~l~~~lrtAtLrh 203 (493)
T KOG2581|consen 125 EAYLYLLVLLFLIDQKEYKEADKISDALLAS-ISIQNRRTLDLIAAKLYFYLYLSYELEGRLADIRSFLHALLRTATLRH 203 (493)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHHHHHHHH-HHhcchhhHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHhhhcC
Q ss_pred -CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHH----hcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 582 -GGGDCMMWSSLLRSCRVHGNEIIGRRVANILM----ELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 582 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~----~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
........+.|++-|...+-++.|..+..+.. ..+...+..++-+|.+.+-+++|+.|.+.|-.+..+.+
T Consensus 204 d~e~qavLiN~LLr~yL~n~lydqa~~lvsK~~~pe~~snne~ARY~yY~GrIkaiqldYssA~~~~~qa~rkap 278 (493)
T KOG2581|consen 204 DEEGQAVLINLLLRNYLHNKLYDQADKLVSKSVYPEAASNNEWARYLYYLGRIKAIQLDYSSALEYFLQALRKAP 278 (493)
T ss_pred cchhHHHHHHHHHHHHhhhHHHHHHHHHhhcccCccccccHHHHHHHHHHhhHHHhhcchhHHHHHHHHHHHhCc
No 449
>PF08311 Mad3_BUB1_I: Mad3/BUB1 homology region 1; InterPro: IPR013212 Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of BUB1 and MAD3 to CDC20p [].; PDB: 3ESL_B 4AEZ_I 4A1G_B 2LAH_A 2WVI_A 3SI5_B.
Probab=43.05 E-value=1.8e+02 Score=23.48 Aligned_cols=43 Identities=7% Similarity=0.142 Sum_probs=31.8
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhc
Q 047767 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFE 373 (666)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 373 (666)
.+..+|..+...|+-..-...|...+..+...|++++|.++|+
T Consensus 81 ~~~~if~~l~~~~IG~~~A~fY~~wA~~le~~~~~~~A~~I~~ 123 (126)
T PF08311_consen 81 DPREIFKFLYSKGIGTKLALFYEEWAEFLEKRGNFKKADEIYQ 123 (126)
T ss_dssp HHHHHHHHHHHHTTSTTBHHHHHHHHHHHHHTT-HHHHHHHHH
T ss_pred CHHHHHHHHHHcCccHHHHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 6777777777777766567777777777878888888777765
No 450
>PF12862 Apc5: Anaphase-promoting complex subunit 5
Probab=42.93 E-value=78 Score=23.77 Aligned_cols=26 Identities=15% Similarity=0.074 Sum_probs=19.4
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
.+.......|+.++|+..+++++++.
T Consensus 46 ~lA~~~~~~G~~~~A~~~l~eAi~~A 71 (94)
T PF12862_consen 46 NLAELHRRFGHYEEALQALEEAIRLA 71 (94)
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 34455677789999999999888743
No 451
>PRK13342 recombination factor protein RarA; Reviewed
Probab=42.54 E-value=3.8e+02 Score=27.18 Aligned_cols=42 Identities=14% Similarity=0.133 Sum_probs=29.9
Q ss_pred HHHHHHHHHh---cCChhHHHHHHHHHHHcCCCCCHHHHHHHhch
Q 047767 383 CNSLMTSLLH---SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKA 424 (666)
Q Consensus 383 ~~~li~~~~~---~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~ 424 (666)
+..++.++.+ ..+.+.|+..+..|.+.|..|....-..+..+
T Consensus 230 ~~~~isa~~ks~rgsd~~aal~~l~~~l~~G~d~~~i~rrl~~~a 274 (413)
T PRK13342 230 HYDLISALHKSIRGSDPDAALYYLARMLEAGEDPLFIARRLVIIA 274 (413)
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 3444555554 57899999999999999988876655555444
No 452
>COG5159 RPN6 26S proteasome regulatory complex component [Posttranslational modification, protein turnover, chaperones]
Probab=41.81 E-value=3e+02 Score=25.79 Aligned_cols=90 Identities=12% Similarity=0.041 Sum_probs=48.0
Q ss_pred HHHHHHHhhCCHHHHHHHhccCC--------CCCHHHHHHH-HHHHHHcCChhHHHHHHHHHHHc----CCCCCHHHHHH
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIP--------SPNVVCFTSI-MNGYSRNGMGREALDMLEVMIQR----GLIPDKVTFLC 523 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~--------~~~~~~~~~l-i~~~~~~~~~~~a~~~~~~m~~~----g~~p~~~~~~~ 523 (666)
-++..+.+.|.+.+|......+. +++..+...+ -.+|...++..++..-+...+.. -.+|-...-.-
T Consensus 130 Kli~l~y~~~~YsdalalIn~ll~ElKk~DDK~~Li~vhllESKvyh~irnv~KskaSLTaArt~Ans~YCPpqlqa~lD 209 (421)
T COG5159 130 KLIYLLYKTGKYSDALALINPLLHELKKYDDKINLITVHLLESKVYHEIRNVSKSKASLTAARTLANSAYCPPQLQAQLD 209 (421)
T ss_pred HHHHHHHhcccHHHHHHHHHHHHHHHHhhcCccceeehhhhhHHHHHHHHhhhhhhhHHHHHHHHhhccCCCHHHHHHHH
Confidence 46777888888888887665443 2333322222 13444555555554444443321 12333333333
Q ss_pred HHHH--hcCCCcHHHHHHHHHHhHH
Q 047767 524 VLAG--CNHSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 524 l~~~--~~~~g~~~~a~~~~~~~~~ 546 (666)
++++ .+...++..|..+|-+..+
T Consensus 210 L~sGIlhcdd~dyktA~SYF~Ea~E 234 (421)
T COG5159 210 LLSGILHCDDRDYKTASSYFIEALE 234 (421)
T ss_pred HhccceeeccccchhHHHHHHHHHh
Confidence 4444 3455677888888777765
No 453
>KOG2062 consensus 26S proteasome regulatory complex, subunit RPN2/PSMD1 [Posttranslational modification, protein turnover, chaperones]
Probab=41.71 E-value=4.9e+02 Score=28.25 Aligned_cols=499 Identities=10% Similarity=-0.023 Sum_probs=0.0
Q ss_pred HHHHHHHhhcCCChhhHHHHHHHHHhCCC--------CCCcccHHHHHHHHHcCCC-hHHHHHHHHHHHHhcCCCchhhh
Q 047767 78 YNLLISGCGKFRHPKQALYLYDEMVSHGI--------KESASTFSSVLSVCSNAGF-YTEGIQIHCRVLSLGFGLNLYIG 148 (666)
Q Consensus 78 ~~~ll~~~~~~~~~~~a~~~~~~m~~~~~--------~~~~~~~~~ll~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~ 148 (666)
.+.++..|...+++..|+.+.-+..+.++ ..+....+.++..+....+ .+--.++++.+.+.-.+.....|
T Consensus 134 v~rmi~kcl~d~e~~~aiGia~E~~rld~ie~Ail~~d~~~~~~~yll~l~~s~v~~~efR~~vlr~lv~~y~~~~~PDy 213 (929)
T KOG2062|consen 134 VERMIQKCLDDNEYKQAIGIAFETRRLDIIEEAILKSDSVIGNLTYLLELLISLVNNREFRNKVLRLLVKTYLKLPSPDY 213 (929)
T ss_pred HHHHHHHhhhhhHHHHHHhHHhhhhhHHHHHHHhccccccchHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHccCCCCCe
Q ss_pred hHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHH-------------cCCCCCHhhHH
Q 047767 149 SPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKA-------------EGVEPNGLSFC 215 (666)
Q Consensus 149 ~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~-------------~~~~p~~~t~~ 215 (666)
..+.++|.-..+.+.+.++++.+.+.|......-|.-.....-.++-+....+-.. .+|--...|..
T Consensus 214 ~~vc~c~v~Ldd~~~va~ll~kL~~e~~~llayQIAFDL~esasQefL~~v~~~l~~d~~~de~p~~kii~ILSGe~tik 293 (929)
T KOG2062|consen 214 FSVCQCYVFLDDAEAVADLLEKLVKEDDLLLAYQIAFDLYESASQEFLDSVLDRLPADDARDEKPMEKIISILSGEETIK 293 (929)
T ss_pred eeeeeeeEEcCCHHHHHHHHHHHHhcchhhhHHHHHHHHhhccCHHHHHHHHHHcccccccccChHHHHHHHhcCchHHH
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccC----------------------------------
Q 047767 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG---------------------------------- 261 (666)
Q Consensus 216 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---------------------------------- 261 (666)
..+..+.+.++.+ ..+++...+.- -..-.++...+.+++.+.|
T Consensus 294 ~~l~FL~~~N~tD--~~iL~~iK~s~-r~sv~H~A~~iAN~fMh~GTT~D~FlR~NL~WlskAtNWaKFtAtAsLGvIH~ 370 (929)
T KOG2062|consen 294 LYLQFLLRHNNTD--LLILEEIKESV-RNSVCHTATLIANAFMHAGTTSDTFLRNNLDWLSKATNWAKFTATASLGVIHR 370 (929)
T ss_pred HHHHHHHHcCCch--HHHHHHHHHHH-HHhhhhHHHHHHHHHHhcCCcchHHHHhchhHHhhcchHhhhhhhhhcceeec
Q ss_pred -ChHHHHHHhccCCCCC---hhhH----HHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHH
Q 047767 262 -SLIEAKKSFDFIPVDD---VISW----NSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGK 333 (666)
Q Consensus 262 -~~~~A~~~~~~~~~~~---~~~~----~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~ 333 (666)
+..+|.+++..-.+.+ ...| ..+.-++.+.|..+++.+.+...++..-.+....=..+--++...|.-
T Consensus 371 G~~~~~~~ll~pYLP~~~~~~s~y~EGGalyAlGLIhA~hG~~~~~yL~~~Lk~~~~e~v~hG~cLGlGLa~mGSa---- 446 (929)
T KOG2062|consen 371 GHENQAMKLLAPYLPKEAGEGSGYKEGGALYALGLIHANHGRGITDYLLQQLKTAENEVVRHGACLGLGLAGMGSA---- 446 (929)
T ss_pred cccchHHHHhhhhCCccCCCCCCccccchhhhhhccccCcCccHHHHHHHHHHhccchhhhhhhhhhccchhcccc----
Q ss_pred HHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 047767 334 QIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413 (666)
Q Consensus 334 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p 413 (666)
+..+|..+-..+-.. +.++-.+-.-+..-..--..-.+.+++|..
T Consensus 447 --------------~~eiYe~lKevLy~D----------------~AvsGEAAgi~MGl~mlGt~~~eaiedm~~----- 491 (929)
T KOG2062|consen 447 --------------NEEIYEKLKEVLYND----------------SAVSGEAAGIAMGLLMLGTANQEAIEDMLT----- 491 (929)
T ss_pred --------------cHHHHHHHHHHHhcc----------------chhhhhHHHHhhhhHhhCcCcHHHHHHHHH-----
Q ss_pred CHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCC-CCCHHH----HHH
Q 047767 414 DEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-SPNVVC----FTS 488 (666)
Q Consensus 414 ~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~----~~~ 488 (666)
++...+.++..+-+ .+.-++.--|+-++|..+.+++. ..|+.. .-+
T Consensus 492 -------------Ya~ETQHeki~RGl----------------~vGiaL~~ygrqe~Ad~lI~el~~dkdpilR~~Gm~t 542 (929)
T KOG2062|consen 492 -------------YAQETQHEKIIRGL----------------AVGIALVVYGRQEDADPLIKELLRDKDPILRYGGMYT 542 (929)
T ss_pred -------------HhhhhhHHHHHHHH----------------HHhHHHHHhhhhhhhHHHHHHHhcCCchhhhhhhHHH
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcC
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG 568 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 568 (666)
+.-+|+-.|+..-..+++.-.... ..-|..-+..+.-++.-..+++....+++-+.+.|+....-.+--+|.-+|+-.|
T Consensus 543 ~alAy~GTgnnkair~lLh~aVsD-~nDDVrRaAVialGFVl~~dp~~~~s~V~lLses~N~HVRyGaA~ALGIaCAGtG 621 (929)
T KOG2062|consen 543 LALAYVGTGNNKAIRRLLHVAVSD-VNDDVRRAAVIALGFVLFRDPEQLPSTVSLLSESYNPHVRYGAAMALGIACAGTG 621 (929)
T ss_pred HHHHHhccCchhhHHHhhcccccc-cchHHHHHHHHHheeeEecChhhchHHHHHHhhhcChhhhhhHHHHHhhhhcCCC
Q ss_pred ChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhC-ChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 569 ILDKAEELLQQTPGGGDCMMWSSLLRSCRVHG-NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 569 ~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
. .+|+.+++-|...|. .+.++| -...|.-..+.--+.+|+-....-.+...-... .++...-|....
T Consensus 622 ~-~eAi~lLepl~~D~~---------~fVRQgAlIa~amIm~Q~t~~~~pkv~~frk~l~kvI~dK--hEd~~aK~GAil 689 (929)
T KOG2062|consen 622 L-KEAINLLEPLTSDPV---------DFVRQGALIALAMIMIQQTEQLCPKVNGFRKQLEKVINDK--HEDGMAKFGAIL 689 (929)
T ss_pred c-HHHHHHHhhhhcChH---------HHHHHHHHHHHHHHHHhcccccCchHHHHHHHHHHHhhhh--hhHHHHHHHHHH
Q ss_pred hCCCCcCCCceEE
Q 047767 648 ARKLTRDIGHSLI 660 (666)
Q Consensus 648 ~~~~~~~~~~~~~ 660 (666)
..|+-.-.|-+..
T Consensus 690 AqGildaGGrNvt 702 (929)
T KOG2062|consen 690 AQGILDAGGRNVT 702 (929)
T ss_pred HhhhhhcCCceEE
No 454
>PRK09857 putative transposase; Provisional
Probab=41.05 E-value=1.4e+02 Score=28.41 Aligned_cols=64 Identities=13% Similarity=0.115 Sum_probs=48.1
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCcC
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTRD 654 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~ 654 (666)
.++......++.++-.++++...+..|.......+++.-+.+.|..++++++.++|...|+..+
T Consensus 211 ~ll~Yi~~~~~~~~~~~~~~~l~~~~~~~~e~iMTiAEqL~qeG~qe~~~~ia~~ml~~g~~~~ 274 (292)
T PRK09857 211 GLFNYILQTGDAVRFNDFIDGVAERSPKHKESLMTIAERLRQEGEQSKALHIAKIMLESGVPLA 274 (292)
T ss_pred HHHHHHhhccccchHHHHHHHHHHhCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCHH
Confidence 3444434567776667777777777777777778888888888988889999999998888643
No 455
>PF13929 mRNA_stabil: mRNA stabilisation
Probab=40.84 E-value=3.2e+02 Score=25.81 Aligned_cols=62 Identities=6% Similarity=-0.100 Sum_probs=32.6
Q ss_pred CCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHh-CCCCCchhHHhHHHHHHHhcCChHHHHH
Q 047767 308 RKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKL-GFDHGSVHVQSALTDMYGKCNVIESSVA 370 (666)
Q Consensus 308 ~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 370 (666)
|..++..+...++..++..+++....+++...... +... |...+..+++.-...|+..-..+
T Consensus 197 ~~~l~~~vi~~Il~~L~~~~dW~kl~~fW~~~~~~~~~~~-D~rpW~~FI~li~~sgD~~~~~k 259 (292)
T PF13929_consen 197 SKSLTRNVIISILEILAESRDWNKLFQFWEQCIPNSVPGN-DPRPWAEFIKLIVESGDQEVMRK 259 (292)
T ss_pred ccCCChhHHHHHHHHHHhcccHHHHHHHHHHhcccCCCCC-CCchHHHHHHHHHHcCCHHHHHH
Confidence 35566666666666666666666666666555544 2222 44444444444444444333333
No 456
>PF04781 DUF627: Protein of unknown function (DUF627); InterPro: IPR006866 This domain represents the N-terminal region of several plant proteins of unknown function.
Probab=40.40 E-value=1.6e+02 Score=22.97 Aligned_cols=40 Identities=8% Similarity=0.052 Sum_probs=26.5
Q ss_pred HHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHH
Q 047767 604 IGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643 (666)
Q Consensus 604 ~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 643 (666)
.+++.+.+...+.|+.+..++.|+.-+-...-|+++..--
T Consensus 62 ~sve~~s~a~~Lsp~~A~~L~~la~~l~s~~~Ykk~v~ka 101 (111)
T PF04781_consen 62 GSVECFSRAVELSPDSAHSLFELASQLGSVKYYKKAVKKA 101 (111)
T ss_pred HhHHHHHHHhccChhHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4677788888888888777777776554444555555433
No 457
>PF10255 Paf67: RNA polymerase I-associated factor PAF67; InterPro: IPR019382 RNA polymerase I is a multi-subunit enzyme and its transcription competence is dependent on the presence of PAF67 [].
Probab=40.36 E-value=1.4e+02 Score=29.84 Aligned_cols=95 Identities=12% Similarity=0.054 Sum_probs=0.0
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHhCCCCC---------------CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 553 DRQHYSCMIDMLGRAGILDKAEELLQQTPGGG---------------DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
+......++..+....++.+-.+..+....+. .--+...|++..+-.||+..|+++++-+-=...
T Consensus 74 ~~~~VLnvL~sLv~kS~I~e~l~~~~~~~~~~~~~~~~g~~~l~~~LGYFSligLlRvh~LLGDY~~Alk~l~~idl~~~ 153 (404)
T PF10255_consen 74 NVYSVLNVLYSLVDKSQINEQLEAEKRGEDPDEVAGEYGSSPLYKMLGYFSLIGLLRVHCLLGDYYQALKVLENIDLNKK 153 (404)
T ss_pred cHHHHHHHHHHHHHHHhHHHHHHHhhccCCchhhhcccccccHHHHhhHHHHHHHHHHHHhccCHHHHHHHhhccCcccc
Q ss_pred C--------CcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 618 V--------DFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 618 ~--------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
. ...+++.+|.+|...++|.+|++.|....
T Consensus 154 ~l~~~V~~~~is~~YyvGFaylMlrRY~DAir~f~~iL 191 (404)
T PF10255_consen 154 GLYTKVPACHISTYYYVGFAYLMLRRYADAIRTFSQIL 191 (404)
T ss_pred hhhccCcchheehHHHHHHHHHHHHHHHHHHHHHHHHH
No 458
>PF04910 Tcf25: Transcriptional repressor TCF25; InterPro: IPR006994 This entry appears to represent a novel family of basic helix-loop-helix (bHLH) proteins that control differentiation and development of a variety of organs [, ]. Human Nulp1 (Q2MK75 from SWISSPROT) is a basic helix-loop-helix protein expressed broadly during early embryonic organogenesis. Over expression of human Nulp1 in COS-7 cells inhibits the transcriptional activity of serum response factor (SRF), suggesting that Nulp1 may act as a novel bHLH transcriptional repressor in the SRF signalling pathway to mediate cellular functions [].
Probab=39.75 E-value=3.9e+02 Score=26.48 Aligned_cols=55 Identities=16% Similarity=0.030 Sum_probs=24.3
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCcHHHHHHHHHHhH
Q 047767 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC-NHSGMVKEGQLVFNSMK 545 (666)
Q Consensus 491 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~~~~~~~ 545 (666)
..+.+.|.+..|+++.+-+......-|......+|+.| .+.++++--+.+.+...
T Consensus 111 ~~L~~RG~~rTAlE~~KlLlsLdp~~DP~g~ll~ID~~ALrs~~y~~Li~~~~~~~ 166 (360)
T PF04910_consen 111 QSLGRRGCWRTALEWCKLLLSLDPDEDPLGVLLFIDYYALRSRQYQWLIDFSESPL 166 (360)
T ss_pred HHHHhcCcHHHHHHHHHHHHhcCCCCCcchhHHHHHHHHHhcCCHHHHHHHHHhHh
Confidence 34445555555555555555522111233333333332 24445555555554443
No 459
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=39.62 E-value=3e+02 Score=25.21 Aligned_cols=163 Identities=9% Similarity=0.097 Sum_probs=82.5
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC-CCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh
Q 047767 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH-SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566 (666)
Q Consensus 488 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~-~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 566 (666)
.+++..-+.++++++...++++...+...+..--+.+..+|-. .|....+++++..+.++..-..+ .....++.-|.+
T Consensus 6 ~~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~~~~~~~~-~~~~~~i~~yk~ 84 (236)
T PF00244_consen 6 YLAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQKEENKGN-EKQVKLIKDYKK 84 (236)
T ss_dssp HHHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTT-HHHHHHHHHHHH
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhhhhcccch-hHHHHHHHHHHH
Confidence 3566677888999999999999887666665555555555422 23444555566555544111211 223333333221
Q ss_pred cC------ChHHHHHHHHhCC----CCCCHHHHHHHHHH--HH---h--hC-----ChHHHHHHHHHHHh-----cCCCC
Q 047767 567 AG------ILDKAEELLQQTP----GGGDCMMWSSLLRS--CR---V--HG-----NEIIGRRVANILME-----LEPVD 619 (666)
Q Consensus 567 ~g------~~~~A~~~~~~~~----~~~~~~~~~~l~~~--~~---~--~~-----~~~~a~~~~~~~~~-----~~p~~ 619 (666)
.= --.+.+.+++... ..+....+-.-+.+ |+ . .| -.+.|.+.|+++.+ +.|.+
T Consensus 85 kie~EL~~~C~eii~lId~~Lip~~~~~eskvfy~KmkgDyyRYlaE~~~~~~~~~~~~~a~~aY~~A~~~a~~~L~~~~ 164 (236)
T PF00244_consen 85 KIEDELIDICNEIIRLIDKSLIPSATSPESKVFYYKMKGDYYRYLAEFDSGDEKKEAAEKALEAYEEALEIAKKELPPTH 164 (236)
T ss_dssp HHHHHHHHHHHHHHHHHHHTCHHHS-SHHHHHHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHHSCTTS
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccchhHHHHHHHHhccccccccccccchhhHHHHHHHHHhhhhHHHHHhcccCCCC
Confidence 10 1134555555543 11222222222211 11 1 11 24677888888766 55666
Q ss_pred cchHH---HH-HHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 620 FAVYS---QV-SNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 620 ~~~~~---~l-~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
|.-.. +. +..|-..|+.++|.++.+.+-+.++
T Consensus 165 p~rLgl~LN~svF~yei~~~~~~A~~ia~~afd~a~ 200 (236)
T PF00244_consen 165 PLRLGLALNYSVFYYEILNDPEKAIEIAKQAFDEAI 200 (236)
T ss_dssp HHHHHHHHHHHHHHHHTSS-HHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 54332 22 2334558999999999887765544
No 460
>KOG1839 consensus Uncharacterized protein CLU1/cluA/TIF31 involved in mitochondrial morphology/distribution, also found associated with eIF-3 [General function prediction only]
Probab=39.15 E-value=1.7e+02 Score=33.78 Aligned_cols=121 Identities=13% Similarity=0.104 Sum_probs=86.3
Q ss_pred HHhcCCCcHHHHHH------HHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC---------CCC-CHHH
Q 047767 526 AGCNHSGMVKEGQL------VFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP---------GGG-DCMM 588 (666)
Q Consensus 526 ~~~~~~g~~~~a~~------~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~-~~~~ 588 (666)
..+...|.+.++.+ ++...... ..|+ ...|..|...+-+.|+.++|+..-.+.. ..| +...
T Consensus 940 q~~~~e~~~~~~~~~~~slnl~~~v~~~--~h~~~~~~~~~La~l~~~~~d~~~Ai~~~~ka~ii~eR~~g~ds~~t~~~ 1017 (1236)
T KOG1839|consen 940 QEALLEDGFSEAYELPESLNLLNNVMGV--LHPEVASKYRSLAKLSNRLGDNQEAIAQQRKACIISERVLGKDSPNTKLA 1017 (1236)
T ss_pred hhhhcccchhhhhhhhhhhhHHHHhhhh--cchhHHHHHHHHHHHHhhhcchHHHHHhcccceeeechhccCCCHHHHHH
Confidence 34455566666666 55543322 2444 7888999999999999999998876543 223 4456
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHh--------cCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 589 WSSLLRSCRVHGNEIIGRRVANILME--------LEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~~~~~~--------~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
|..+.-.+...++...|...+.++.+ ..|+-.....++..++...++++.|+++.+.+..
T Consensus 1018 y~nlal~~f~~~~~~~al~~~~ra~~l~~Ls~ge~hP~~a~~~~nle~l~~~v~e~d~al~~le~A~a 1085 (1236)
T KOG1839|consen 1018 YGNLALYEFAVKNLSGALKSLNRALKLKLLSSGEDHPPTALSFINLELLLLGVEEADTALRYLESALA 1085 (1236)
T ss_pred hhHHHHHHHhccCccchhhhHHHHHHhhccccCCCCCchhhhhhHHHHHHhhHHHHHHHHHHHHHHHH
Confidence 66666667777788888888888776 2455555667788888888999999999998876
No 461
>COG0735 Fur Fe2+/Zn2+ uptake regulation proteins [Inorganic ion transport and metabolism]
Probab=38.44 E-value=1.4e+02 Score=24.78 Aligned_cols=62 Identities=21% Similarity=0.091 Sum_probs=40.3
Q ss_pred HHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCC
Q 047767 63 AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124 (666)
Q Consensus 63 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 124 (666)
+.+.+.+---+-+..-..++..+.+.+.+-.|.++|+.+.+.+...+..|.-..++.+...|
T Consensus 8 ~~~~lk~~glr~T~qR~~vl~~L~~~~~~~sAeei~~~l~~~~p~islaTVYr~L~~l~e~G 69 (145)
T COG0735 8 AIERLKEAGLRLTPQRLAVLELLLEADGHLSAEELYEELREEGPGISLATVYRTLKLLEEAG 69 (145)
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcCCCCCHHHHHHHHHHhCCCCCHhHHHHHHHHHHHCC
Confidence 33444333323334456678888888888999999999999876666555555555555544
No 462
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=38.41 E-value=1.4e+02 Score=25.57 Aligned_cols=59 Identities=8% Similarity=-0.054 Sum_probs=27.7
Q ss_pred HhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCCh
Q 047767 102 VSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161 (666)
Q Consensus 102 ~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 161 (666)
+..|++++..- ..++..+...++.-.|.++++.+.+.+...+..|-..-+..+...|-+
T Consensus 18 ~~~GlR~T~qR-~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv 76 (169)
T PRK11639 18 AQRNVRLTPQR-LEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFV 76 (169)
T ss_pred HHcCCCCCHHH-HHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCE
Confidence 34444433332 233444444444445555555555555444444444444555554443
No 463
>PF13934 ELYS: Nuclear pore complex assembly
Probab=37.81 E-value=3.2e+02 Score=24.88 Aligned_cols=97 Identities=15% Similarity=0.129 Sum_probs=50.4
Q ss_pred HhhCCHHHHHHHhccCCC-CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHH
Q 047767 463 SRCGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541 (666)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 541 (666)
...+++++|.+.+..-.- |+- -.-++.++...|+.+.|+.+++.+.-....+ .....++.. ...+.+.+|..+-
T Consensus 89 LD~~~~~~A~~~L~~ps~~~~~--~~~Il~~L~~~~~~~lAL~y~~~~~p~l~s~--~~~~~~~~~-La~~~v~EAf~~~ 163 (226)
T PF13934_consen 89 LDHGDFEEALELLSHPSLIPWF--PDKILQALLRRGDPKLALRYLRAVGPPLSSP--EALTLYFVA-LANGLVTEAFSFQ 163 (226)
T ss_pred hChHhHHHHHHHhCCCCCCccc--HHHHHHHHHHCCChhHHHHHHHhcCCCCCCH--HHHHHHHHH-HHcCCHHHHHHHH
Confidence 345667777777644421 111 1236666666788888887777643221111 122222333 3446777777766
Q ss_pred HHhHHhhCCCCCchHHHHHHHHHHhcC
Q 047767 542 NSMKSVYGIDADRQHYSCMIDMLGRAG 568 (666)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~l~~~~~~~g 568 (666)
+...+. -....+..++..+....
T Consensus 164 R~~~~~----~~~~l~e~l~~~~~~~~ 186 (226)
T PF13934_consen 164 RSYPDE----LRRRLFEQLLEHCLEEC 186 (226)
T ss_pred HhCchh----hhHHHHHHHHHHHHHHh
Confidence 655432 11345666666555433
No 464
>TIGR02710 CRISPR-associated protein, TIGR02710 family. Members of this family are found, exclusively in the vicinity of CRISPR repeats and other CRISPR-associated (cas) genes, in Methanothermobacter thermautotrophicus (Archaea), Thermus thermophilus (Deinococcus-Thermus), Chloroflexus aurantiacus (Chloroflexi), and Thermomicrobium roseum (Thermomicrobia).
Probab=37.56 E-value=4.3e+02 Score=26.31 Aligned_cols=53 Identities=17% Similarity=-0.053 Sum_probs=29.0
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHH----HHHHHHhc--CCCcHHHHHHHHHH
Q 047767 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTF----LCVLAGCN--HSGMVKEGQLVFNS 543 (666)
Q Consensus 491 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~----~~l~~~~~--~~g~~~~a~~~~~~ 543 (666)
..+.+.+++..|.++|+++.....+|+...+ ..+..+|. ..-++++|.+.++.
T Consensus 138 r~l~n~~dy~aA~~~~~~L~~r~l~~~~~~~~~~~~~l~~~y~~WD~fd~~~A~~~L~~ 196 (380)
T TIGR02710 138 RRAINAFDYLFAHARLETLLRRLLSAVNHTFYEAMIKLTRAYLHWDRFEHEEALDYLND 196 (380)
T ss_pred HHHHHhcChHHHHHHHHHHHhcccChhhhhHHHHHHHHHHHHHHHHccCHHHHHHHHhh
Confidence 3455677778888888887776555444332 22222222 23345556665553
No 465
>PRK12798 chemotaxis protein; Reviewed
Probab=37.45 E-value=4.4e+02 Score=26.43 Aligned_cols=187 Identities=14% Similarity=0.107 Sum_probs=121.1
Q ss_pred HHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHH--HcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH-hcCCCcH
Q 047767 458 LMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYS--RNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG-CNHSGMV 534 (666)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~--~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~-~~~~g~~ 534 (666)
.+-....-|+++-...++..-..++.. +.++.+.. -.|+..++.+.|..+...-.++....|..|+.+ .....+.
T Consensus 87 a~iy~lSGGnP~vlr~L~~~d~~~~~d--~~L~~g~laY~~Gr~~~a~~~La~i~~~~l~~~lg~~laLv~a~l~~~~dP 164 (421)
T PRK12798 87 ALIYLLSGGNPATLRKLLARDKLGNFD--QRLADGALAYLSGRGREARKLLAGVAPEYLPAELGAYLALVQGNLMVATDP 164 (421)
T ss_pred HHhhHhcCCCHHHHHHHHHcCCCChhh--HHHHHHHHHHHcCCHHHHHHHhhcCChhhcCchhhhHHHHHHHHHhcccCH
Confidence 333445667787777777766654332 12222221 268999999999988776666666778888776 4556789
Q ss_pred HHHHHHHHHhHHhhCCCCCc----hHHHHHHHHHHhcCChHHHHH----HHHhCCCCCCH-HHHHHHHHHHHhhCChHHH
Q 047767 535 KEGQLVFNSMKSVYGIDADR----QHYSCMIDMLGRAGILDKAEE----LLQQTPGGGDC-MMWSSLLRSCRVHGNEIIG 605 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g~~~~A~~----~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a 605 (666)
..|+++|+..+- .-|.. ....--+......|+.+++.. ++++....|-. ..+..+..+..+.++-..-
T Consensus 165 ~~Al~~lD~aRL---laPGTLvEEAALRRsi~la~~~g~~~rf~~la~~Y~rRF~~S~YA~~F~~~F~~~~~~~~d~~~~ 241 (421)
T PRK12798 165 ATALKLLDQARL---LAPGTLVEEAALRRSLFIAAQLGDADKFEALARNYLRRFRHSPYASQFAQRFVDLVVRLDDEIRD 241 (421)
T ss_pred HHHHHHHHHHHH---hCCchHHHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHhccCchHHHHHHHHHHHHHhccccccH
Confidence 999999999873 35652 233444456678899888665 45666666633 3344444445555433332
Q ss_pred HHHHHHHHh-cCCCC-cchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 606 RRVANILME-LEPVD-FAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 606 ~~~~~~~~~-~~p~~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+.+..++. ++|.. ...|..++..-.-.|+.+-|.-.-++.....
T Consensus 242 -~~l~~~ls~~d~~~q~~lYL~iAR~Ali~Gk~~lA~~As~~A~~L~ 287 (421)
T PRK12798 242 -ARLVEILSFMDPERQRELYLRIARAALIDGKTELARFASERALKLA 287 (421)
T ss_pred -HHHHHHHHhcCchhHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHhc
Confidence 33555554 55543 5677888888899999999988888776544
No 466
>COG4259 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=37.18 E-value=1.4e+02 Score=22.59 Aligned_cols=34 Identities=15% Similarity=-0.054 Sum_probs=19.7
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHH
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 624 (666)
.|...|...|+.+.+.+-|+.=..+.|.+....+
T Consensus 77 hLGlLys~~G~~e~a~~eFetEKalFPES~~fmD 110 (121)
T COG4259 77 HLGLLYSNSGKDEQAVREFETEKALFPESGVFMD 110 (121)
T ss_pred HHHHHHhhcCChHHHHHHHHHhhhhCccchhHHH
Confidence 3444556666666666666666666665543333
No 467
>KOG4567 consensus GTPase-activating protein [General function prediction only]
Probab=37.17 E-value=2.8e+02 Score=26.38 Aligned_cols=69 Identities=12% Similarity=0.142 Sum_probs=33.3
Q ss_pred HHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHH----------hcCCchHHHHHHH
Q 047767 131 QIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFC----------ELSRPDEVLRMYN 200 (666)
Q Consensus 131 ~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~----------~~~~~~~a~~~~~ 200 (666)
++++.+.+.++.|.-+.+.-+.-.+...=.+..+..+++.+.. |..-|..|+..|| -.|++..-+++++
T Consensus 264 EL~~~L~~~~i~PqfyaFRWitLLLsQEF~lpDvi~lWDsl~s-D~~rfd~Ll~iCcsmlil~Re~il~~DF~~nmkLLQ 342 (370)
T KOG4567|consen 264 ELWRHLEEKEIHPQFYAFRWITLLLSQEFPLPDVIRLWDSLLS-DPQRFDFLLYICCSMLILVRERILEGDFTVNMKLLQ 342 (370)
T ss_pred HHHHHHHhcCCCccchhHHHHHHHHhccCCchhHHHHHHHHhc-ChhhhHHHHHHHHHHHHHHHHHHHhcchHHHHHHHh
Confidence 3455555555555555554444444555555555555555443 1111344443333 2466666665554
No 468
>KOG0687 consensus 26S proteasome regulatory complex, subunit RPN7/PSMD6 [Posttranslational modification, protein turnover, chaperones]
Probab=37.17 E-value=3.9e+02 Score=25.72 Aligned_cols=37 Identities=11% Similarity=0.025 Sum_probs=22.9
Q ss_pred hHHHHHHHHHcCCChHHHHHHHHHhHh----cCCCCChhhH
Q 047767 280 SWNSIVSIYADYDLIFDALELFFRMQL----CRKRPSIRSF 316 (666)
Q Consensus 280 ~~~~li~~~~~~g~~~~a~~~~~~m~~----~~~~p~~~t~ 316 (666)
.+-....-|++.|+.+.|++.+++-.+ .|.+.|..-+
T Consensus 106 a~~~kaeYycqigDkena~~~~~~t~~ktvs~g~kiDVvf~ 146 (393)
T KOG0687|consen 106 AMLRKAEYYCQIGDKENALEALRKTYEKTVSLGHKIDVVFY 146 (393)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHHHhhcccchhhHHH
Confidence 444555678888888888887766533 3444444333
No 469
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=37.02 E-value=3.6e+02 Score=25.35 Aligned_cols=97 Identities=15% Similarity=0.115 Sum_probs=50.2
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHH----HcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCch-H
Q 047767 483 VVCFTSIMNGYSRNGMGREALDMLEVMI----QRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ-H 556 (666)
Q Consensus 483 ~~~~~~li~~~~~~~~~~~a~~~~~~m~----~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~-~ 556 (666)
...|..+..-|++.++.+.+.+..++.. ..|.+.|.. +-..+.-.|....-+++.++..+.+.++ |-..+.. -
T Consensus 115 ~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEk-GgDWeRrNR 193 (412)
T COG5187 115 SEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEK-GGDWERRNR 193 (412)
T ss_pred HHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHh-CCCHHhhhh
Confidence 3455666667777777777666554433 345555554 2223333444444566777777777776 5544421 1
Q ss_pred HHHHHHHH-HhcCChHHHHHHHHhC
Q 047767 557 YSCMIDML-GRAGILDKAEELLQQT 580 (666)
Q Consensus 557 ~~~l~~~~-~~~g~~~~A~~~~~~~ 580 (666)
|...-..| ....++.+|-.++.+.
T Consensus 194 yK~Y~Gi~~m~~RnFkeAa~Ll~d~ 218 (412)
T COG5187 194 YKVYKGIFKMMRRNFKEAAILLSDI 218 (412)
T ss_pred HHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 21111111 2334566666665543
No 470
>KOG0890 consensus Protein kinase of the PI-3 kinase family involved in mitotic growth, DNA repair and meiotic recombination [Signal transduction mechanisms; Chromatin structure and dynamics; Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=36.93 E-value=9.9e+02 Score=30.37 Aligned_cols=108 Identities=12% Similarity=0.009 Sum_probs=71.0
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CC----------C--
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GG----------G-- 584 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~----------~-- 584 (666)
.+|....+.+.+.|.++.|...+-.+.+. + -+..+--.++.+...|+...|+.++++.. .. |
T Consensus 1671 e~wLqsAriaR~aG~~q~A~nall~A~e~-r---~~~i~~E~AK~lW~~gd~~~Al~~Lq~~l~~~~~~~~~~~~~~p~~ 1746 (2382)
T KOG0890|consen 1671 ECWLQSARIARLAGHLQRAQNALLNAKES-R---LPEIVLERAKLLWQTGDELNALSVLQEILSKNFPDLHTPYTDTPQS 1746 (2382)
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHhhhhc-c---cchHHHHHHHHHHhhccHHHHHHHHHHHHHhhcccccCCccccchh
Confidence 36888888888899999999887777654 2 24556666788889999999999987543 11 1
Q ss_pred -CHHHHH--H-HHHHH-HhhCC--hHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 047767 585 -DCMMWS--S-LLRSC-RVHGN--EIIGRRVANILMELEPVDFAVYSQVSNFY 630 (666)
Q Consensus 585 -~~~~~~--~-l~~~~-~~~~~--~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 630 (666)
+..... - ++.-| ...++ .+.-++.|+.+.+..|.....++.|+..|
T Consensus 1747 ~n~~i~~~~~L~~~~~~~es~n~~s~~ilk~Y~~~~ail~ewe~~hy~l~~yy 1799 (2382)
T KOG0890|consen 1747 VNLLIFKKAKLKITKYLEESGNFESKDILKYYHDAKAILPEWEDKHYHLGKYY 1799 (2382)
T ss_pred hhhhhhhhHHHHHHHHHHHhcchhHHHHHHHHHHHHHHcccccCceeeHHHHH
Confidence 111222 1 11112 22344 33456888899999997777777777433
No 471
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=36.47 E-value=1.9e+02 Score=26.74 Aligned_cols=49 Identities=8% Similarity=-0.063 Sum_probs=22.6
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCC------CcchHHHHHHHHhhcCCchHHHHH
Q 047767 594 RSCRVHGNEIIGRRVANILMELEPV------DFAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
..|...|++++|.++|+.+...... ...+...|..++...|+.++.+.+
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~~~yr~egW~~l~~~~l~~l~~Ca~~~~~~~~~l~~ 240 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAASSYRREGWWSLLTEVLWRLLECAKRLGDVEDYLTT 240 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 3344445555555555544332111 122334455555556665555554
No 472
>KOG3824 consensus Huntingtin interacting protein HYPE [General function prediction only]
Probab=35.60 E-value=54 Score=30.65 Aligned_cols=54 Identities=9% Similarity=0.052 Sum_probs=33.7
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG 584 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~ 584 (666)
..+.|+.++|..+|+.... +.|+ +....-+.......+++-+|-.++-+.. ..|
T Consensus 126 ~~~~Gk~ekA~~lfeHAla---laP~~p~~L~e~G~f~E~~~~iv~ADq~Y~~ALtisP 181 (472)
T KOG3824|consen 126 SRKDGKLEKAMTLFEHALA---LAPTNPQILIEMGQFREMHNEIVEADQCYVKALTISP 181 (472)
T ss_pred HHhccchHHHHHHHHHHHh---cCCCCHHHHHHHhHHHHhhhhhHhhhhhhheeeeeCC
Confidence 3477888999999988874 4666 5555555554444555666666554433 444
No 473
>PHA03100 ankyrin repeat protein; Provisional
Probab=35.34 E-value=5.2e+02 Score=26.71 Aligned_cols=241 Identities=12% Similarity=0.054 Sum_probs=116.6
Q ss_pred hHHhhhccCCCccchhhhhhcccCCCCCchh--hhhHHHHh-----HhcCCChhhHHHHhhcCCC---CCchhHHHHHHH
Q 047767 15 TLAPTCTSIVPLSSSLLLDSYCQPNPQLNIY--SSNRTIDD-----FVKSGHLNSAKKLFDEMPA---RDMVTYNLLISG 84 (666)
Q Consensus 15 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~l~~~-----~~~~g~~~~A~~~~~~~~~---~~~~~~~~ll~~ 84 (666)
+.+-...+.++.+.+..+.+.-. .|+.. .....+.. .+..|..+-+.-+++.-.. ++..-.+.+.-+
T Consensus 37 t~L~~A~~~~~~~ivk~Ll~~g~---~~~~~~~~~~t~L~~~~~~~a~~~~~~~iv~~Ll~~ga~i~~~d~~g~tpL~~A 113 (480)
T PHA03100 37 LPLYLAKEARNIDVVKILLDNGA---DINSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYA 113 (480)
T ss_pred hhhhhhhccCCHHHHHHHHHcCC---CCCCccccCcCHHHHHHHHHHHhhchHHHHHHHHHCCCCCCCCCCCCCchhhHH
Confidence 34445566677888888876543 22221 11233444 5667777777666665433 222233444433
Q ss_pred hh-cCCChhhHHHHHHHHHhCCCCCCccc--HHHHHHHHHcCC--ChHHHHHHHHHHHHhcCCCchhh--hhHHHHHhHh
Q 047767 85 CG-KFRHPKQALYLYDEMVSHGIKESAST--FSSVLSVCSNAG--FYTEGIQIHCRVLSLGFGLNLYI--GSPLVDLYMR 157 (666)
Q Consensus 85 ~~-~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~ 157 (666)
.. ..|+.+ +++.+.+.|..++... -...+..++..| +.+ +.+.+.+.|..++... -.+-+...+.
T Consensus 114 ~~~~~~~~~----iv~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~----iv~~Ll~~g~din~~d~~g~tpL~~A~~ 185 (480)
T PHA03100 114 ISKKSNSYS----IVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLK----ILKLLIDKGVDINAKNRYGYTPLHIAVE 185 (480)
T ss_pred HhcccChHH----HHHHHHHcCCCCCccCCCCCcHHHHHHHcCCChHH----HHHHHHHCCCCcccccCCCCCHHHHHHH
Confidence 32 455544 4444455565443221 123455555556 443 4445556665554322 2344566677
Q ss_pred cCChhHHHHhhccCCCCCcc---c-----HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHh---hHHHHHHHhcccCC
Q 047767 158 MGPSVRALDLFDELPERNLA---T-----WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL---SFCYMVRGCSIGML 226 (666)
Q Consensus 158 ~g~~~~a~~~~~~~~~~~~~---~-----~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~---t~~~ll~~~~~~~~ 226 (666)
.|+.+-+.-+++.-..++.. . +...+...+..|+ ...++.+.+.+.|..++.. -.+. +...+..|+
T Consensus 186 ~~~~~iv~~Ll~~ga~~~~~~~~~~~~~~~~t~l~~a~~~~~--~~~~iv~~Ll~~g~din~~d~~g~Tp-L~~A~~~~~ 262 (480)
T PHA03100 186 KGNIDVIKFLLDNGADINAGDIETLLFTIFETPLHIAACYNE--ITLEVVNYLLSYGVPINIKDVYGFTP-LHYAVYNNN 262 (480)
T ss_pred hCCHHHHHHHHHcCCCccCCCCCCCcHHHHHhHHHHHHHhCc--CcHHHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcCC
Confidence 78877777777655443321 1 1333444445554 1123444455566554322 2222 333344555
Q ss_pred hHHHHHHHHHHHHhCCCCchHHHH--HHHHHHHHccCChHHHHHHhccCC
Q 047767 227 LDEGKQLHSHVIKLGWVDVNIFVA--NALVDFYSACGSLIEAKKSFDFIP 274 (666)
Q Consensus 227 ~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~A~~~~~~~~ 274 (666)
.+ +++.+.+.| ..++.... ..-+....+.+..+-+..+++.-.
T Consensus 263 ~~----iv~~Ll~~g-ad~n~~d~~g~tpl~~A~~~~~~~iv~~Ll~~g~ 307 (480)
T PHA03100 263 PE----FVKYLLDLG-ANPNLVNKYGDTPLHIAILNNNKEIFKLLLNNGP 307 (480)
T ss_pred HH----HHHHHHHcC-CCCCccCCCCCcHHHHHHHhCCHHHHHHHHhcCC
Confidence 44 344444555 33332211 122334455667766666666544
No 474
>KOG2908 consensus 26S proteasome regulatory complex, subunit RPN9/PSMD13 [Posttranslational modification, protein turnover, chaperones]
Probab=35.33 E-value=4.2e+02 Score=25.63 Aligned_cols=18 Identities=22% Similarity=0.209 Sum_probs=8.2
Q ss_pred cCCCcHHHHHHHHHHhHH
Q 047767 529 NHSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 529 ~~~g~~~~a~~~~~~~~~ 546 (666)
...|+.+++.+.++...+
T Consensus 126 L~i~DLk~~kk~ldd~~~ 143 (380)
T KOG2908|consen 126 LEINDLKEIKKLLDDLKS 143 (380)
T ss_pred HhcccHHHHHHHHHHHHH
Confidence 344444444444444443
No 475
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=35.04 E-value=4e+02 Score=27.76 Aligned_cols=23 Identities=26% Similarity=0.541 Sum_probs=17.9
Q ss_pred HHHHHHHhhCCHHHHHHHhccCC
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIP 479 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~ 479 (666)
.++.-|.+.+++++|..++..|.
T Consensus 413 eL~~~yl~~~qi~eAi~lL~smn 435 (545)
T PF11768_consen 413 ELISQYLRCDQIEEAINLLLSMN 435 (545)
T ss_pred HHHHHHHhcCCHHHHHHHHHhCC
Confidence 45667888888888888888776
No 476
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=34.95 E-value=39 Score=36.55 Aligned_cols=43 Identities=23% Similarity=0.251 Sum_probs=20.2
Q ss_pred hcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHH
Q 047767 566 RAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANI 611 (666)
Q Consensus 566 ~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 611 (666)
..|+++.|++.-.++- |..+|..|+.....+|+.+-|+..|++
T Consensus 655 e~gnle~ale~akkld---d~d~w~rLge~Al~qgn~~IaEm~yQ~ 697 (1202)
T KOG0292|consen 655 ECGNLEVALEAAKKLD---DKDVWERLGEEALRQGNHQIAEMCYQR 697 (1202)
T ss_pred hcCCHHHHHHHHHhcC---cHHHHHHHHHHHHHhcchHHHHHHHHH
Confidence 3444444444443332 444455555554555555444444444
No 477
>cd07153 Fur_like Ferric uptake regulator(Fur) and related metalloregulatory proteins; typically iron-dependent, DNA-binding repressors and activators. Ferric uptake regulator (Fur) and related metalloregulatory proteins are iron-dependent, DNA-binding repressors and activators mainly involved in iron metabolism. A general model for Fur repression under iron-rich conditions is that activated Fur (a dimer having one Fe2+ coordinated per monomer) binds to specific DNA sequences (Fur boxes) in the promoter region of iron-responsive genes, hindering access of RNA polymerase, and repressing transcription. Positive regulation by Fur can be direct or indirect, as in the Fur repression of an anti-sense regulatory small RNA. Some members sense metal ions other than Fe2+. For example, the zinc uptake regulator (Zur) responds to Zn2+, the manganese uptake regulator (Mur) responds to Mn2+, and the nickel uptake regulator (Nur) responds to Ni2+. Other members sense signals other than metal ions.
Probab=34.50 E-value=87 Score=24.61 Aligned_cols=46 Identities=17% Similarity=0.159 Sum_probs=27.9
Q ss_pred HHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCh
Q 047767 81 LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126 (666)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 126 (666)
++..+...+.+-.|.++++.+.+.+..++..|.-..|+.+...|-+
T Consensus 6 Il~~l~~~~~~~sa~ei~~~l~~~~~~i~~~TVYR~L~~L~~~Gli 51 (116)
T cd07153 6 ILEVLLESDGHLTAEEIYERLRKKGPSISLATVYRTLELLEEAGLV 51 (116)
T ss_pred HHHHHHhCCCCCCHHHHHHHHHhcCCCCCHHHHHHHHHHHHhCCCE
Confidence 4555555566667777777777766555655555555555555443
No 478
>COG1747 Uncharacterized N-terminal domain of the transcription elongation factor GreA [Function unknown]
Probab=34.35 E-value=5.4e+02 Score=26.58 Aligned_cols=92 Identities=16% Similarity=0.142 Sum_probs=67.9
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 047767 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356 (666)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 356 (666)
|....-+++..+..+.+..-+..+..+|...| .+...|..++.++... ..+.-..+|+.+.+..+. +...-..|+
T Consensus 65 ~d~~l~~~~~~f~~n~k~~~veh~c~~~l~~~--e~kmal~el~q~y~en-~n~~l~~lWer~ve~dfn--Dvv~~ReLa 139 (711)
T COG1747 65 DDSCLVTLLTIFGDNHKNQIVEHLCTRVLEYG--ESKMALLELLQCYKEN-GNEQLYSLWERLVEYDFN--DVVIGRELA 139 (711)
T ss_pred cchHHHHHHHHhccchHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHhc-CchhhHHHHHHHHHhcch--hHHHHHHHH
Confidence 44456677888888888888888888888754 5667788888888877 556777888888887666 666677777
Q ss_pred HHHHhcCChHHHHHHhcc
Q 047767 357 DMYGKCNVIESSVAVFES 374 (666)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~ 374 (666)
..|-+ ++.+.+...|..
T Consensus 140 ~~yEk-ik~sk~a~~f~K 156 (711)
T COG1747 140 DKYEK-IKKSKAAEFFGK 156 (711)
T ss_pred HHHHH-hchhhHHHHHHH
Confidence 77766 666666666544
No 479
>COG5187 RPN7 26S proteasome regulatory complex component, contains PCI domain [Posttranslational modification, protein turnover, chaperones]
Probab=33.94 E-value=4.1e+02 Score=25.03 Aligned_cols=66 Identities=9% Similarity=0.138 Sum_probs=36.6
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCC--------CcccHH-HHHHHHHhcCChhHHHHHHHHHHHcCCCC
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGR--------SLECCN-SLMTSLLHSGNIKDAVEMFGFMVDEGIGL 413 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--------~~~~~~-~li~~~~~~~~~~~a~~~~~~m~~~~~~p 413 (666)
...++..+.+.|++.++.+.+.+..++...+ |+...- .+.-.|....-.++.++..+.|.+.|..-
T Consensus 114 ~~ea~~n~aeyY~qi~D~~ng~~~~~~~~~~a~stg~KiDv~l~kiRlg~~y~d~~vV~e~lE~~~~~iEkGgDW 188 (412)
T COG5187 114 GSEADRNIAEYYCQIMDIQNGFEWMRRLMRDAMSTGLKIDVFLCKIRLGLIYGDRKVVEESLEVADDIIEKGGDW 188 (412)
T ss_pred HHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHhcccchhhHHHHHHHHHhhccHHHHHHHHHHHHHHHHhCCCH
Confidence 4556667777788877777777766554332 211111 11122333333567777777777776543
No 480
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=33.64 E-value=6.7e+02 Score=27.98 Aligned_cols=130 Identities=12% Similarity=0.067 Sum_probs=89.6
Q ss_pred HHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHH
Q 047767 461 AYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540 (666)
Q Consensus 461 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 540 (666)
....+|+++.|.+.-..+- +..+|..|.......|+.+-|.-.|++.+. |..|--.|.-.|+.++-.++
T Consensus 652 LaLe~gnle~ale~akkld--d~d~w~rLge~Al~qgn~~IaEm~yQ~~kn---------fekLsfLYliTgn~eKL~Km 720 (1202)
T KOG0292|consen 652 LALECGNLEVALEAAKKLD--DKDVWERLGEEALRQGNHQIAEMCYQRTKN---------FEKLSFLYLITGNLEKLSKM 720 (1202)
T ss_pred eehhcCCHHHHHHHHHhcC--cHHHHHHHHHHHHHhcchHHHHHHHHHhhh---------hhheeEEEEEeCCHHHHHHH
Confidence 3556788888888776654 566799999999999999999999988765 55555567788999988887
Q ss_pred HHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 541 FNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 541 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
.+.+..+ .|.... ..--.-.|+.++-.++++..-..|- .| ..-..+|.-++|.++.++.-.
T Consensus 721 ~~iae~r----~D~~~~---~qnalYl~dv~ervkIl~n~g~~~l--ay----lta~~~G~~~~ae~l~ee~~~ 781 (1202)
T KOG0292|consen 721 MKIAEIR----NDATGQ---FQNALYLGDVKERVKILENGGQLPL--AY----LTAAAHGLEDQAEKLGEELEK 781 (1202)
T ss_pred HHHHHhh----hhhHHH---HHHHHHhccHHHHHHHHHhcCcccH--HH----HHHhhcCcHHHHHHHHHhhcc
Confidence 7766543 332211 1112236888888888877653331 11 123456888888888887765
No 481
>PF09986 DUF2225: Uncharacterized protein conserved in bacteria (DUF2225); InterPro: IPR018708 This conserved bacterial family has no known function.
Probab=33.56 E-value=3.6e+02 Score=24.27 Aligned_cols=25 Identities=16% Similarity=0.016 Sum_probs=19.2
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
++....+.|+.++|.+.+.+++...
T Consensus 171 igeL~rrlg~~~eA~~~fs~vi~~~ 195 (214)
T PF09986_consen 171 IGELNRRLGNYDEAKRWFSRVIGSK 195 (214)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHcCC
Confidence 4444678899999999999888744
No 482
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=33.25 E-value=3.8e+02 Score=24.44 Aligned_cols=52 Identities=13% Similarity=0.228 Sum_probs=37.1
Q ss_pred HHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 047767 368 SVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420 (666)
Q Consensus 368 a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 420 (666)
+..+|+-...|.+.....++..+. .+++++|.+++.++-+.|..|....-+.
T Consensus 227 ~enVfKv~d~PhP~~v~~ml~~~~-~~~~~~A~~il~~lw~lgysp~Dii~~~ 278 (333)
T KOG0991|consen 227 QENVFKVCDEPHPLLVKKMLQACL-KRNIDEALKILAELWKLGYSPEDIITTL 278 (333)
T ss_pred hhhhhhccCCCChHHHHHHHHHHH-hccHHHHHHHHHHHHHcCCCHHHHHHHH
Confidence 345566666666666666666544 5679999999999999999987655443
No 483
>PF04190 DUF410: Protein of unknown function (DUF410) ; InterPro: IPR007317 This is a family of conserved eukaryotic proteins with undetermined function.; PDB: 3LKU_E 2WPV_G.
Probab=33.14 E-value=4.1e+02 Score=24.81 Aligned_cols=144 Identities=17% Similarity=0.201 Sum_probs=59.9
Q ss_pred HHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHH---hCC--CCchHHHHHH
Q 047767 388 TSLLHSGNIKDAVEMF----GFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIK---SGF--ESNIAVSCSL 458 (666)
Q Consensus 388 ~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~---~~~--~~~~~~~~~l 458 (666)
..+.+.|+...|-++. +-..+.+.++|......++..+........+ -..+...+.+ .+- .-++..-..+
T Consensus 18 ~~ll~~~Q~~sg~DL~~lliev~~~~~~~~~~~~~~rl~~l~~~~~~~~p~-r~~fi~~ai~WS~~~~~~~Gdp~LH~~~ 96 (260)
T PF04190_consen 18 LILLKHGQYGSGADLALLLIEVYEKSEDPVDEESIARLIELISLFPPEEPE-RKKFIKAAIKWSKFGSYKFGDPELHHLL 96 (260)
T ss_dssp HHHHHTT-HHHHHHHHHHHHHHHHHTT---SHHHHHHHHHHHHHS-TT-TT-HHHHHHHHHHHHHTSS-TT--HHHHHHH
T ss_pred HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCcch-HHHHHHHHHHHHccCCCCCCCHHHHHHH
Confidence 3455566655554443 3333446666665555554442111111111 2222222222 111 1345556666
Q ss_pred HHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHH
Q 047767 459 MDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQ 538 (666)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~ 538 (666)
...|.+.|++.+|+..|---.+++...+..++.-....|...++ |...-..++ -|.-.++...|.
T Consensus 97 a~~~~~e~~~~~A~~Hfl~~~~~~~~~~~~ll~~~~~~~~~~e~--------------dlfi~RaVL-~yL~l~n~~~A~ 161 (260)
T PF04190_consen 97 AEKLWKEGNYYEAERHFLLGTDPSAFAYVMLLEEWSTKGYPSEA--------------DLFIARAVL-QYLCLGNLRDAN 161 (260)
T ss_dssp HHHHHHTT-HHHHHHHHHTS-HHHHHHHHHHHHHHHHHTSS--H--------------HHHHHHHHH-HHHHTTBHHHHH
T ss_pred HHHHHhhccHHHHHHHHHhcCChhHHHHHHHHHHHHHhcCCcch--------------hHHHHHHHH-HHHHhcCHHHHH
Confidence 77777777777777666444333333332233222222222222 111122222 244456777777
Q ss_pred HHHHHhHHh
Q 047767 539 LVFNSMKSV 547 (666)
Q Consensus 539 ~~~~~~~~~ 547 (666)
..++...+.
T Consensus 162 ~~~~~f~~~ 170 (260)
T PF04190_consen 162 ELFDTFTSK 170 (260)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777666544
No 484
>smart00777 Mad3_BUB1_I Mad3/BUB1 hoMad3/BUB1 homology region 1. Proteins containing this domain are checkpoint proteins involved in cell division. This region has been shown to be essential for the binding of the binding of BUB1 and MAD3 to CDC20p.
Probab=32.97 E-value=2e+02 Score=23.16 Aligned_cols=40 Identities=30% Similarity=0.410 Sum_probs=17.7
Q ss_pred HHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHH
Q 047767 538 QLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQ 578 (666)
Q Consensus 538 ~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~ 578 (666)
.++|..|..+ ++-.. ...|...+..+...|++.+|.++++
T Consensus 83 ~~if~~L~~~-~IG~~~AlfYe~~A~~lE~~g~~~~A~~iy~ 123 (125)
T smart00777 83 RELFQFLYSK-GIGTKLALFYEEWAQLLEAAGRYKKADEVYQ 123 (125)
T ss_pred HHHHHHHHHC-CcchhhHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 3344444443 33333 3334444444445555555555443
No 485
>PF04090 RNA_pol_I_TF: RNA polymerase I specific initiation factor; InterPro: IPR007224 The RNA polymerase I specific transcription initiation factor Rrn11 is a member of a multiprotein complex essential for the initiation of transcription by RNA polymerase I. Binding to the DNA template is dependent on the initial binding of other factors [].
Probab=32.92 E-value=2.3e+02 Score=25.01 Aligned_cols=59 Identities=19% Similarity=0.246 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH-HHHhhcCCchHHHHHHHHH
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS-NFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~-~~~~~~g~~~~A~~~~~~~ 646 (666)
....++..|...||++.|-++|--++...+-|......+| .++.+.+.-....+.++.|
T Consensus 43 ~L~~lLh~~llr~d~~rA~Raf~lLiR~~~VDiR~~W~iG~eIL~~~~~~~~~~~fl~~l 102 (199)
T PF04090_consen 43 VLTDLLHLCLLRGDWDRAYRAFGLLIRCPEVDIRSLWGIGAEILMRRGEQNSELEFLEWL 102 (199)
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHcCCCCChHhcchHHHHHHHcCCCcchHHHHHHHH
Confidence 3344555555556666666666655555444433333333 4444444443333444444
No 486
>KOG0128 consensus RNA-binding protein SART3 (RRM superfamily) [RNA processing and modification]
Probab=32.71 E-value=7.2e+02 Score=27.50 Aligned_cols=107 Identities=17% Similarity=0.164 Sum_probs=52.7
Q ss_pred HHHHHHHHHhHHhhCCCCCchHHHHHHHHHH-hcCChHHHHHHHHhCCCCCC--HH-HHHHHHHHHHhhCChHHHHHHHH
Q 047767 535 KEGQLVFNSMKSVYGIDADRQHYSCMIDMLG-RAGILDKAEELLQQTPGGGD--CM-MWSSLLRSCRVHGNEIIGRRVAN 610 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~-~~g~~~~A~~~~~~~~~~~~--~~-~~~~l~~~~~~~~~~~~a~~~~~ 610 (666)
..|...|...... ...+...........+. -+++.+.+..+++.+...+. .. .|...++.-+..|+...+..+++
T Consensus 443 ~~A~~eLt~~~~~-~~Dt~~~~~q~wA~~E~sl~~nmd~~R~iWn~imty~~~~iag~Wle~~~lE~~~g~~~~~R~~~R 521 (881)
T KOG0128|consen 443 NHAWEELTELYGD-QLDTRTEVLQLWAQVEASLLKNMDKAREIWNFIMTYGGGSIAGKWLEAINLEREYGDGPSARKVLR 521 (881)
T ss_pred HHHHHHHHHHhhh-hhhhHHHHHHHHHHHHHHHhhchhhhhHhhhccccCCcchHHHHHHHHHhHHHHhCCchhHHHHHH
Confidence 3444444444332 22333334444444433 34567778888877764442 22 45555555566677777777666
Q ss_pred HHHh--cCCCC-cchHHHHHHHHhhcCCchHHHHH
Q 047767 611 ILME--LEPVD-FAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 611 ~~~~--~~p~~-~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
++.- .+|++ -.++..+-..-...|.++.+...
T Consensus 522 ~ay~~~~~~~~~~ev~~~~~r~Ere~gtl~~~~~~ 556 (881)
T KOG0128|consen 522 KAYSQVVDPEDALEVLEFFRRFEREYGTLESFDLC 556 (881)
T ss_pred HHHhcCcCchhHHHHHHHHHHHHhccccHHHHhhh
Confidence 6554 22321 12223333333445555544433
No 487
>PF11817 Foie-gras_1: Foie gras liver health family 1; InterPro: IPR021773 Mutating the gene foie gras in zebrafish has been shown to affect development; the mutants develop large, lipid-filled hepatocytes in the liver, resembling those in individuals with fatty liver disease []. Foie-gras protein is long and has several well-defined domains though none of them has a known function. We have annotated this one as the first []. THe C terminus of this region contains TPR repeats.
Probab=32.08 E-value=1.1e+02 Score=28.36 Aligned_cols=20 Identities=5% Similarity=-0.012 Sum_probs=9.7
Q ss_pred HHhcCCCcHHHHHHHHHHhH
Q 047767 526 AGCNHSGMVKEGQLVFNSMK 545 (666)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~~~ 545 (666)
.-|.+.|++++|.++|+.+.
T Consensus 186 ~ey~~~g~~~~A~~~l~~~~ 205 (247)
T PF11817_consen 186 EEYFRLGDYDKALKLLEPAA 205 (247)
T ss_pred HHHHHCCCHHHHHHHHHHHH
Confidence 33444555555555555443
No 488
>KOG1308 consensus Hsp70-interacting protein Hip/Transient component of progesterone receptor complexes and an Hsp70-binding protein [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=32.05 E-value=65 Score=30.84 Aligned_cols=82 Identities=13% Similarity=0.041 Sum_probs=46.6
Q ss_pred HcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHH
Q 047767 495 RNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDK 572 (666)
Q Consensus 495 ~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~ 572 (666)
..|.++.|++.+...+. ..|. ...|.--.+++.+.+.+..|++=++... .+.|| ..-|-.=..+....|+|++
T Consensus 126 n~G~~~~ai~~~t~ai~--lnp~~a~l~~kr~sv~lkl~kp~~airD~d~A~---ein~Dsa~~ykfrg~A~rllg~~e~ 200 (377)
T KOG1308|consen 126 NDGEFDTAIELFTSAIE--LNPPLAILYAKRASVFLKLKKPNAAIRDCDFAI---EINPDSAKGYKFRGYAERLLGNWEE 200 (377)
T ss_pred cCcchhhhhcccccccc--cCCchhhhcccccceeeeccCCchhhhhhhhhh---ccCcccccccchhhHHHHHhhchHH
Confidence 45666777777766666 3333 3345555566666677777766666665 34555 2223322333445667777
Q ss_pred HHHHHHhCC
Q 047767 573 AEELLQQTP 581 (666)
Q Consensus 573 A~~~~~~~~ 581 (666)
|...+....
T Consensus 201 aa~dl~~a~ 209 (377)
T KOG1308|consen 201 AAHDLALAC 209 (377)
T ss_pred HHHHHHHHH
Confidence 766666544
No 489
>PRK11639 zinc uptake transcriptional repressor; Provisional
Probab=32.01 E-value=1.9e+02 Score=24.74 Aligned_cols=68 Identities=18% Similarity=0.068 Sum_probs=46.4
Q ss_pred hhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChH
Q 047767 60 LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYT 127 (666)
Q Consensus 60 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~ 127 (666)
.+.+.+++...--+.+..-..++..+...++.-.|.++++.+.+.+..++..|.-..|..+...|-+.
T Consensus 10 ~~~~~~~L~~~GlR~T~qR~~IL~~l~~~~~hlSa~eI~~~L~~~~~~is~aTVYRtL~~L~e~Glv~ 77 (169)
T PRK11639 10 LAQAEKLCAQRNVRLTPQRLEVLRLMSLQPGAISAYDLLDLLREAEPQAKPPTVYRALDFLLEQGFVH 77 (169)
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhcCCCCCHHHHHHHHHhhCCCCCcchHHHHHHHHHHCCCEE
Confidence 33445555444334455556677777777778899999999998887777777666677777766553
No 490
>PF12926 MOZART2: Mitotic-spindle organizing gamma-tubulin ring associated; InterPro: IPR024332 The MOZART2 family of proteins (also known as FAM128 and Mitotic-spindle organizing protein 2) operate as part of the gamma-tubulin ring complex, gamma-TuRC, one of the complexes necessary for chromosome segregation. This complex is located at centrosomes and mediates the formation of bipolar spindles in mitosis; it consists of six subunits. However, unlike the other four known subunits, the MOZART proteins, both 1 and 2, do not carry the conserved 'Spc97-Spc98' GCP domain, so the TUBGCP nomenclature cannot be used for it. The exact function of MOZART2 is not clear [].
Probab=31.76 E-value=90 Score=22.93 Aligned_cols=41 Identities=10% Similarity=-0.017 Sum_probs=35.6
Q ss_pred hhhhccc-CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCC
Q 047767 31 LLDSYCQ-PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP 71 (666)
Q Consensus 31 ~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 71 (666)
++|+..+ .|+..|...|..+++.+.-+=.++...++++.|.
T Consensus 29 EL~ELa~~AGv~~dp~VFriildLL~~nVsP~AI~qmLK~m~ 70 (88)
T PF12926_consen 29 ELYELAQLAGVPMDPEVFRIILDLLRLNVSPDAIFQMLKSMC 70 (88)
T ss_pred HHHHHHHHhCCCcChHHHHHHHHHHHcCCCHHHHHHHHHHHH
Confidence 7888888 8999999999999998888888888888888775
No 491
>PF09454 Vps23_core: Vps23 core domain; InterPro: IPR017916 The Endosomal Sorting Complex Required for Transport (ESCRT) complexes form the machinery driving protein sorting from endosomes to lysosomes. ESCRT complexes are central to receptor down-regulation, lysosome biogenesis, and budding of HIV. Yeast ESCRT-I consists of three protein subunits, VPS23, VPS28, and VPS37. In humans, ESCRT-I comprises TSG101, VPS28, and one of four potential human VPS37 homologues. The main role of ESCRT-I is to recognise ubiquitinated cargo via the UEV domain of the VPS23/TSG101 subunit. The assembly of the ESCRT-I complex is directed by the C-terminal steadiness box (SB) of VPS23, the N-terminal half of VPS28, and the C-terminal half of VPS37. The structure is primarily composed of three long, parallel helical hairpins, each corresponding to a different subunit. The additional domains and motifs extending beyond the core serve as gripping tools for ESCRT-I critical functions [, ]. This entry represents the Steadiness box domain.; PDB: 2CAZ_A 2F66_D 2F6M_A 2P22_A.
Probab=31.71 E-value=69 Score=22.14 Aligned_cols=50 Identities=14% Similarity=0.126 Sum_probs=32.6
Q ss_pred CCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHc
Q 047767 72 ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122 (666)
Q Consensus 72 ~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 122 (666)
.|....++.++..+++-.-.++++..+.+....|. .+..+|.--++.+++
T Consensus 5 ~~~~~l~~Ql~el~Aed~AieDtiy~L~~al~~g~-I~~d~~lK~vR~LaR 54 (65)
T PF09454_consen 5 VAEDPLSNQLYELVAEDHAIEDTIYYLDRALQRGS-IDLDTFLKQVRSLAR 54 (65)
T ss_dssp E-SSHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTS-S-HHHHHHHHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHH
Confidence 34556677777777777777778888887777774 455666555555544
No 492
>COG5191 Uncharacterized conserved protein, contains HAT (Half-A-TPR) repeat [General function prediction only]
Probab=31.57 E-value=74 Score=29.93 Aligned_cols=73 Identities=12% Similarity=0.032 Sum_probs=54.3
Q ss_pred CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH-HHHHHhhcCCchHHHHHHHHHHhCCCCcCCCceE
Q 047767 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ-VSNFYSEIGEFEVSMQIRETALARKLTRDIGHSL 659 (666)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~ 659 (666)
..|+..|...+.--.+.|.+.+-..++.+++...|.|...|.. -..-|...++++-+..+|. +|++-.+..+.
T Consensus 104 f~D~k~w~~y~~Y~~k~k~y~~~~nI~~~~l~khP~nvdlWI~~c~~e~~~~ani~s~Ra~f~----~glR~N~~~p~ 177 (435)
T COG5191 104 FNDPKIWSQYAAYVIKKKMYGEMKNIFAECLTKHPLNVDLWIYCCAFELFEIANIESSRAMFL----KGLRMNSRSPR 177 (435)
T ss_pred CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCceeeeeeccchhhhhccHHHHHHHHH----hhhccCCCCch
Confidence 3478888777766677788999999999999999999988875 3445566788888777764 55555555443
No 493
>PF12796 Ank_2: Ankyrin repeats (3 copies); InterPro: IPR020683 This entry represents the ankyrin repeat-containing domain. These domains contain multiple repeats of a beta(2)-alpha(2) motif. The ankyrin repeat is one of the most common protein-protein interaction motifs in nature. Ankyrin repeats are tandemly repeated modules of about 33 amino acids. They occur in a large number of functionally diverse proteins mainly from eukaryotes. The few known examples from prokaryotes and viruses may be the result of horizontal gene transfers []. The repeat has been found in proteins of diverse function such as transcriptional initiators, cell-cycle regulators, cytoskeletal, ion transporters and signal transducers. The ankyrin fold appears to be defined by its structure rather than its function since there is no specific sequence or structure which is universally recognised by it. The conserved fold of the ankyrin repeat unit is known from several crystal and solution structures [, , , ]. Each repeat folds into a helix-loop-helix structure with a beta-hairpin/loop region projecting out from the helices at a 90o angle. The repeats stack together to form an L-shaped structure [, ].; PDB: 3AAA_C 3F6Q_A 2KBX_A 3IXE_A 3TWR_D 3TWV_A 3TWT_B 3TWQ_A 3TWS_A 3TWX_B ....
Probab=31.20 E-value=1.5e+02 Score=21.61 Aligned_cols=14 Identities=29% Similarity=0.496 Sum_probs=6.9
Q ss_pred hcCCChhhHHHHhh
Q 047767 55 VKSGHLNSAKKLFD 68 (666)
Q Consensus 55 ~~~g~~~~A~~~~~ 68 (666)
++.|+++-+..+++
T Consensus 5 ~~~~~~~~~~~ll~ 18 (89)
T PF12796_consen 5 AQNGNLEILKFLLE 18 (89)
T ss_dssp HHTTTHHHHHHHHH
T ss_pred HHcCCHHHHHHHHH
Confidence 34455555555544
No 494
>PF00244 14-3-3: 14-3-3 protein; InterPro: IPR023410 The 14-3-3 proteins are a large family of approximately 30kDa acidic proteins which exist primarily as homo- and heterodimeric within all eukaryotic cells [, ]. There is a high degree of sequence identity and conservation between all the 14-3-3 isotypes, particularly in the regions which form the dimer interface or line the central ligand binding channel of the dimeric molecule. Each 14-3-3 protein sequence can be roughly divided into three sections: a divergent amino terminus, the conserved core region and a divergent carboxyl terminus. The conserved middle core region of the 14-3-3s encodes an amphipathic groove that forms the main functional domain, a cradle for interacting with client proteins. The monomer consists of nine helices organised in an antiparallel manner, forming an L-shaped structure. The interior of the L-structure is composed of four helices: H3 and H5, which contain many charged and polar amino acids, and H7 and H9, which contain hydrophobic amino acids. These four helices form the concave amphipathic groove that interacts with target peptides. 14-3-3 proteins mainly bind proteins containing phosphothreonine or phosphoserine motifs however exceptions to this rule do exist. Extensive investigation of the 14-3-3 binding site of the mammalian serine/threonine kinase Raf-1 has produced a consensus sequence for 14-3-3-binding, RSxpSxP (in the single-letter amino-acid code, where x denotes any amino acid and p indicates that the next residue is phosphorylated). 14-3-3 proteins appear to effect intracellular signalling in one of three ways - by direct regulation of the catalytic activity of the bound protein, by regulating interactions between the bound protein and other molecules in the cell by sequestration or modification or by controlling the subcellular localisation of the bound ligand. Proteins appear to initially bind to a single dominant site and then subsequently to many, much weaker secondary interaction sites. The 14-3-3 dimer is capable of changing the conformation of its bound ligand whilst itself undergoing minimal structural alteration. This entry represents the structural domain found in 14-3-3 proteins.; PDB: 2O8P_A 3AXY_D 2C74_A 2C63_A 4DX0_A 1YWT_A 3P1O_A 3P1N_A 4DAU_A 3U9X_A ....
Probab=31.00 E-value=3.1e+02 Score=25.18 Aligned_cols=58 Identities=7% Similarity=0.011 Sum_probs=37.9
Q ss_pred HHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHc-CCChHHHHHHHHHHHH
Q 047767 81 LISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN-AGFYTEGIQIHCRVLS 138 (666)
Q Consensus 81 ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~-~~~~~~a~~~~~~~~~ 138 (666)
+....-+.|+++++.+.++++...+...+..--+.+..+|-. .|....+.+++..+..
T Consensus 7 ~Aklaeq~eRy~dmv~~mk~~~~~~~eLt~eERnLlsvayKn~i~~~R~s~R~l~~~e~ 65 (236)
T PF00244_consen 7 LAKLAEQAERYDDMVEYMKQLIEMNPELTEEERNLLSVAYKNVIGSRRASWRILSSIEQ 65 (236)
T ss_dssp HHHHHHHTTHHHHHHHHHHHHHHTSS---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhccccchHHHHhhhhHhh
Confidence 455667788899999999998888777777766666666643 3445556666655554
No 495
>PF06957 COPI_C: Coatomer (COPI) alpha subunit C-terminus; InterPro: IPR010714 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the C terminus (approximately 500 residues) of the eukaryotic coatomer alpha subunit [, ]. This domain is found along with the IPR006692 from INTERPRO domain. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0005515 protein binding, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030126 COPI vesicle coat; PDB: 3MKR_B 3MV2_E 3MKQ_B 3MV3_A.
Probab=30.12 E-value=3e+02 Score=27.79 Aligned_cols=109 Identities=14% Similarity=0.111 Sum_probs=57.4
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhc---CC
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA---GI 569 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~---g~ 569 (666)
+...|++.+|+..|+.++. ...+.......+.+++.+++...++- +...-++.-.+. ..
T Consensus 214 ~~t~gKF~eA~~~Fr~iL~----------~i~l~vv~~~~E~~e~~eli~icrEY--------ilgl~iEl~Rr~l~~~~ 275 (422)
T PF06957_consen 214 LFTAGKFEEAIEIFRSILH----------SIPLLVVESREEEDEAKELIEICREY--------ILGLSIELERRELPKDP 275 (422)
T ss_dssp HHHTT-HHHHHHHHHHHHH----------HHHC--BSSCHHHHHHHHHHHHHHHH--------HHHHHHHHHHCTS-TTT
T ss_pred HHhcCCHHHHHHHHHHHHH----------HhheeeecCHHHHHHHHHHHHHHHHH--------HHHHHHHHHHHhccccc
Confidence 3567888888888887653 22222333334455566665554431 111112221111 11
Q ss_pred hHHH------HHHHHhCCCCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 570 LDKA------EELLQQTPGGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 570 ~~~A------~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
.++. ..+|-.....| -..++..-+..+.+.+|+..|-.+.++++++.|+.
T Consensus 276 ~~~~kR~lELAAYFThc~LQp~H~~LaLr~AM~~~~K~KNf~tAa~FArRLLel~p~~ 333 (422)
T PF06957_consen 276 VEDQKRNLELAAYFTHCKLQPSHLILALRSAMSQAFKLKNFITAASFARRLLELNPSP 333 (422)
T ss_dssp HHHHHHHHHHHHHHCCS---HHHHHHHHHHHHHHCCCTTBHHHHHHHHHHHHCT--SC
T ss_pred hhhHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHcCCCH
Confidence 1222 22344444444 34566667777889999999999999999999864
No 496
>PF07064 RIC1: RIC1; InterPro: IPR009771 This entry represents RIC1 (Ribosomal control protein1) and has been identified in yeast as a Golgi protein involved in retrograde transport to the cis-Golgi network. It forms a heterodimer with Rgp1 and functions as a guanyl-nucleotide exchange factor [] which activates YPT6 by exchanging bound GDP for free GTP. RIC1 is thereby required for efficient fusion of endosome-derived vesicles with the Golgi. The RIC1-RGP1 complex participates in the recycling of SNC1, presumably by mediating fusion of endosomal vesicles with the Golgi compartment and may also be indirectly involved in the transcription of both ribosomal protein genes and ribosomal RNA [, , ].
Probab=29.87 E-value=4.6e+02 Score=24.43 Aligned_cols=156 Identities=12% Similarity=-0.089 Sum_probs=75.5
Q ss_pred hHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCh-----HHHHHHHHHHHHhcCCCchhhhhHH
Q 047767 77 TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY-----TEGIQIHCRVLSLGFGLNLYIGSPL 151 (666)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~-----~~a~~~~~~~~~~~~~~~~~~~~~l 151 (666)
-.+.+|+.+.+.+....|+++.+.+... +-=..+...++......... ......+....+.- .. ...|-.+
T Consensus 84 ~L~~iL~~lL~~~~~~~a~~i~~~y~~l--~~F~~~LE~LLh~vL~~e~~~~~~~~~~~~~L~~v~~ll-~~-f~~~l~I 159 (258)
T PF07064_consen 84 FLHHILRHLLRRNLDEEALEIASKYRSL--PYFSHALELLLHTVLEEEADSSEDSPIPDALLPRVISLL-QE-FPEYLEI 159 (258)
T ss_pred chHHHHHHHHhcCCcHHHHHHHHHhccC--CCcHHHHHHHHHHHHhhcccccccccchHHHHHHHHHHH-Hc-CcchHHH
Confidence 3556777777777777777777776542 22223333333332221111 11111222221110 00 1123344
Q ss_pred HHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC-CCC-----CHhhHHHHHHHhcccC
Q 047767 152 VDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG-VEP-----NGLSFCYMVRGCSIGM 225 (666)
Q Consensus 152 l~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p-----~~~t~~~ll~~~~~~~ 225 (666)
+..|.|.=+...=..+|+.+..| ..|+..|.+.|+.+.|-.++--+.... ... +...-..++......+
T Consensus 160 vv~C~RKtE~~~W~~LF~~lg~P-----~dLf~~cl~~~~l~tAa~yLlVl~~~e~~~~~~~~~~~~~al~LL~~a~~~~ 234 (258)
T PF07064_consen 160 VVNCARKTEVRYWPYLFDYLGSP-----RDLFEECLENGNLKTAASYLLVLQNLEGSSVVKDEESRQCALRLLVMALESG 234 (258)
T ss_pred HHHHHHhhHHHHHHHHHHhcCCH-----HHHHHHHHHcCcHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHhcc
Confidence 44455544444444455544322 356666777777777766655554332 111 2233344555566677
Q ss_pred ChHHHHHHHHHHHHhC
Q 047767 226 LLDEGKQLHSHVIKLG 241 (666)
Q Consensus 226 ~~~~a~~~~~~~~~~~ 241 (666)
+++.+.++.+-+...+
T Consensus 235 ~w~Lc~eL~RFL~~ld 250 (258)
T PF07064_consen 235 DWDLCFELVRFLKALD 250 (258)
T ss_pred cHHHHHHHHHHHHHhC
Confidence 7777777777666544
No 497
>KOG2422 consensus Uncharacterized conserved protein [Function unknown]
Probab=29.72 E-value=6.8e+02 Score=26.34 Aligned_cols=53 Identities=13% Similarity=0.083 Sum_probs=25.9
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc-CCCcHHHHHHHHHHh
Q 047767 492 GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN-HSGMVKEGQLVFNSM 544 (666)
Q Consensus 492 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~-~~g~~~~a~~~~~~~ 544 (666)
.+.+.|.+..|+++.+-+.+....-|+.....+|+.|+ +..++.-.+++++..
T Consensus 351 ~l~~RGC~rTA~E~cKlllsLdp~eDPl~~l~~ID~~ALrareYqwiI~~~~~~ 404 (665)
T KOG2422|consen 351 SLAQRGCWRTALEWCKLLLSLDPSEDPLGILYLIDIYALRAREYQWIIELSNEP 404 (665)
T ss_pred HHHhcCChHHHHHHHHHHhhcCCcCCchhHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 34455666666666555555222213334444444432 445555555555554
No 498
>KOG0403 consensus Neoplastic transformation suppressor Pdcd4/MA-3, contains MA3 domain [Signal transduction mechanisms]
Probab=29.02 E-value=6.2e+02 Score=25.61 Aligned_cols=59 Identities=10% Similarity=0.123 Sum_probs=45.6
Q ss_pred hHHHHHHHhcCChHHHHHHhccCCCC---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC
Q 047767 353 SALTDMYGKCNVIESSVAVFESAPGR---SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI 411 (666)
Q Consensus 353 ~~l~~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~ 411 (666)
..|+.-|...|++.+|...++++.-| ..+.+.+++.+.-+.|+-...+++++..-..|.
T Consensus 513 ~~LLeEY~~~GdisEA~~CikeLgmPfFhHEvVkkAlVm~mEkk~d~t~~ldLLk~cf~sgl 574 (645)
T KOG0403|consen 513 DMLLEEYELSGDISEACHCIKELGMPFFHHEVVKKALVMVMEKKGDSTMILDLLKECFKSGL 574 (645)
T ss_pred HHHHHHHHhccchHHHHHHHHHhCCCcchHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcCc
Confidence 35677788888888888888877655 445678888888888888888888888777663
No 499
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=28.80 E-value=2.7e+02 Score=28.60 Aligned_cols=51 Identities=8% Similarity=0.060 Sum_probs=27.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELL 577 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 577 (666)
.|-.++.-+...++|++|.++.....+ ...|.+++....+..+..-++..+
T Consensus 575 py~~iL~e~~sssKWeqavRLCrfv~e-------qTMWAtlAa~Av~~~~m~~~EiAY 625 (737)
T KOG1524|consen 575 PYPEILHEYLSSSKWEQAVRLCRFVQE-------QTMWATLAAVAVRKHQMQISEIAY 625 (737)
T ss_pred ccHHHHHHHhccchHHHHHHHHHhccc-------hHHHHHHHHHHHhhccccHHHHHH
Confidence 355555566666666666666654433 244555555555544443333333
No 500
>PRK09462 fur ferric uptake regulator; Provisional
Probab=28.76 E-value=2.2e+02 Score=23.70 Aligned_cols=61 Identities=13% Similarity=0.199 Sum_probs=35.8
Q ss_pred HHHhCCCCCCcccHHHHHHHHHcC-CChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCCh
Q 047767 100 EMVSHGIKESASTFSSVLSVCSNA-GFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161 (666)
Q Consensus 100 ~m~~~~~~~~~~~~~~ll~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 161 (666)
.+.+.|++++..- ..++..+... +..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 7 ~l~~~glr~T~qR-~~Il~~l~~~~~~h~sa~eI~~~l~~~~~~i~~aTVYR~L~~L~e~Gli 68 (148)
T PRK09462 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (148)
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCCE
Confidence 3455566544433 3445555543 45667777777777776666666655556666665544
Done!