Query 047767
Match_columns 666
No_of_seqs 584 out of 3172
Neff 11.6
Searched_HMMs 29240
Date Mon Mar 25 04:28:43 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047767.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047767hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 2.1E-40 7.2E-45 353.8 40.2 500 52-631 61-595 (597)
2 2xpi_A Anaphase-promoting comp 100.0 4.2E-39 1.4E-43 343.8 37.8 482 155-651 63-581 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 1.7E-25 5.9E-30 224.5 39.4 370 183-635 6-388 (388)
4 4g26_A Pentatricopeptide repea 100.0 2E-27 6.7E-32 241.6 23.0 182 382-566 28-222 (501)
5 4g26_A Pentatricopeptide repea 100.0 1.8E-27 6.1E-32 241.9 18.6 184 76-260 27-223 (501)
6 1w3b_A UDP-N-acetylglucosamine 99.9 7.6E-25 2.6E-29 219.8 36.7 348 220-649 8-368 (388)
7 2gw1_A Mitochondrial precursor 99.9 2.5E-23 8.6E-28 217.4 30.3 438 178-651 8-480 (514)
8 2gw1_A Mitochondrial precursor 99.9 6.4E-21 2.2E-25 199.2 37.7 454 44-628 6-491 (514)
9 2y4t_A DNAJ homolog subfamily 99.9 9.4E-22 3.2E-26 201.7 30.5 344 244-652 23-413 (450)
10 3fp2_A TPR repeat-containing p 99.9 6.4E-22 2.2E-26 207.9 29.3 420 177-650 26-492 (537)
11 3fp2_A TPR repeat-containing p 99.9 9.7E-20 3.3E-24 191.3 34.9 446 75-624 25-500 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 6.8E-20 2.3E-24 187.8 32.3 146 489-639 263-444 (450)
13 3ieg_A DNAJ homolog subfamily 99.8 2.1E-17 7.3E-22 163.5 32.2 172 454-630 156-350 (359)
14 1xi4_A Clathrin heavy chain; a 99.8 4.9E-15 1.7E-19 159.5 50.0 500 77-642 841-1377(1630)
15 1xi4_A Clathrin heavy chain; a 99.8 7E-15 2.4E-19 158.3 50.7 541 38-641 981-1584(1630)
16 3ieg_A DNAJ homolog subfamily 99.8 4.1E-17 1.4E-21 161.5 30.7 311 277-651 2-337 (359)
17 2ooe_A Cleavage stimulation fa 99.8 5.8E-16 2E-20 161.6 38.1 411 210-650 12-493 (530)
18 3hym_B Cell division cycle pro 99.8 5E-17 1.7E-21 158.8 28.2 287 277-637 21-322 (330)
19 1b89_A Protein (clathrin heavy 99.8 2.7E-17 9.2E-22 158.7 23.6 285 56-373 15-306 (449)
20 3mkr_A Coatomer subunit epsilo 99.8 6.3E-17 2.2E-21 153.6 24.1 247 351-643 36-288 (291)
21 2xm6_A Protein corresponding t 99.8 1.8E-15 6.1E-20 156.2 36.9 371 210-633 38-453 (490)
22 3hym_B Cell division cycle pro 99.8 1.3E-16 4.4E-21 155.8 25.7 216 428-649 67-299 (330)
23 2xm6_A Protein corresponding t 99.8 3.7E-15 1.3E-19 153.8 37.3 305 326-651 92-434 (490)
24 1fch_A Peroxisomal targeting s 99.7 1E-16 3.4E-21 159.3 22.7 278 360-646 36-356 (368)
25 4eqf_A PEX5-related protein; a 99.7 1.6E-16 5.5E-21 157.6 22.1 232 379-650 64-311 (365)
26 1b89_A Protein (clathrin heavy 99.7 6.4E-16 2.2E-20 149.2 21.9 285 259-580 15-308 (449)
27 4g1t_A Interferon-induced prot 99.7 6.4E-15 2.2E-19 151.7 29.4 216 430-660 226-470 (472)
28 2pl2_A Hypothetical conserved 99.7 4.7E-16 1.6E-20 141.0 16.8 193 449-647 2-212 (217)
29 3mkr_A Coatomer subunit epsilo 99.7 8.4E-16 2.9E-20 145.8 18.7 245 357-651 7-266 (291)
30 4eqf_A PEX5-related protein; a 99.7 1.1E-15 3.6E-20 151.7 20.3 157 485-645 179-352 (365)
31 2ooe_A Cleavage stimulation fa 99.7 4.7E-14 1.6E-18 147.1 33.1 405 175-618 12-495 (530)
32 3cv0_A Peroxisome targeting si 99.7 1.4E-15 5E-20 148.1 19.6 256 383-646 24-312 (327)
33 1fch_A Peroxisomal targeting s 99.7 1.8E-15 6.3E-20 150.2 20.3 293 55-372 36-353 (368)
34 3spa_A Mtrpol, DNA-directed RN 99.7 4.3E-17 1.5E-21 169.9 8.5 149 42-190 125-286 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.6 8.9E-17 3E-21 167.5 6.5 132 448-580 123-262 (1134)
36 4g1t_A Interferon-induced prot 99.6 9.5E-14 3.3E-18 142.9 25.9 134 482-627 333-471 (472)
37 3uq3_A Heat shock protein STI1 99.6 2.3E-14 7.9E-19 134.2 18.9 218 382-650 7-237 (258)
38 3cv0_A Peroxisome targeting si 99.6 1.9E-14 6.6E-19 140.1 18.2 272 43-337 20-310 (327)
39 3uq3_A Heat shock protein STI1 99.6 1.2E-13 4.1E-18 129.3 19.1 238 348-629 4-256 (258)
40 2ho1_A Type 4 fimbrial biogene 99.6 2E-13 7E-18 127.2 20.5 198 452-651 37-240 (252)
41 2vq2_A PILW, putative fimbrial 99.6 4.4E-13 1.5E-17 122.4 21.7 200 450-651 6-213 (225)
42 3vtx_A MAMA; tetratricopeptide 99.6 1.9E-13 6.4E-18 120.5 18.3 164 482-650 4-171 (184)
43 3e4b_A ALGK; tetratricopeptide 99.6 1.4E-12 4.9E-17 132.1 26.8 371 221-648 13-420 (452)
44 1ouv_A Conserved hypothetical 99.5 1.1E-12 3.7E-17 123.9 23.9 224 379-651 5-253 (273)
45 2q7f_A YRRB protein; TPR, prot 99.5 1.2E-13 4.2E-18 127.9 16.8 198 451-651 22-224 (243)
46 1xnf_A Lipoprotein NLPI; TPR, 99.5 2.8E-13 9.6E-18 128.1 19.1 208 427-643 53-269 (275)
47 3e4b_A ALGK; tetratricopeptide 99.5 3.5E-12 1.2E-16 129.3 26.9 344 284-652 9-390 (452)
48 3u4t_A TPR repeat-containing p 99.5 3.8E-13 1.3E-17 127.0 17.7 243 352-634 6-269 (272)
49 2q7f_A YRRB protein; TPR, prot 99.5 5.4E-13 1.8E-17 123.5 17.1 215 379-634 22-241 (243)
50 2h6f_A Protein farnesyltransfe 99.5 5.9E-13 2E-17 130.5 17.8 223 382-648 99-347 (382)
51 3u4t_A TPR repeat-containing p 99.5 9.1E-13 3.1E-17 124.4 18.6 228 382-652 5-253 (272)
52 2ho1_A Type 4 fimbrial biogene 99.5 3.7E-12 1.3E-16 118.6 22.4 203 382-624 39-247 (252)
53 2h6f_A Protein farnesyltransfe 99.5 3.8E-13 1.3E-17 131.8 15.8 243 348-633 96-366 (382)
54 4abn_A Tetratricopeptide repea 99.5 3.6E-13 1.2E-17 137.5 14.0 191 450-645 100-317 (474)
55 2vq2_A PILW, putative fimbrial 99.5 7E-12 2.4E-16 114.3 21.4 206 380-626 8-222 (225)
56 1ouv_A Conserved hypothetical 99.5 6.1E-12 2.1E-16 118.7 20.6 226 348-620 5-256 (273)
57 2pl2_A Hypothetical conserved 99.4 2E-12 7E-17 116.9 16.4 195 74-274 4-212 (217)
58 4gyw_A UDP-N-acetylglucosamine 99.4 1.5E-12 5E-17 138.1 17.7 162 482-648 8-173 (723)
59 4a1s_A PINS, partner of inscut 99.4 1E-12 3.5E-17 132.5 15.0 197 452-648 126-371 (411)
60 1xnf_A Lipoprotein NLPI; TPR, 99.4 1.9E-12 6.5E-17 122.4 16.0 215 430-650 18-245 (275)
61 3sf4_A G-protein-signaling mod 99.4 2.4E-12 8.2E-17 129.5 16.6 266 349-647 9-334 (406)
62 3ro2_A PINS homolog, G-protein 99.4 4.9E-12 1.7E-16 123.4 17.1 199 452-650 83-333 (338)
63 3sf4_A G-protein-signaling mod 99.4 1.9E-12 6.6E-17 130.1 13.5 300 277-638 8-365 (406)
64 3vtx_A MAMA; tetratricopeptide 99.4 7.3E-12 2.5E-16 110.1 15.5 166 450-620 3-175 (184)
65 3as5_A MAMA; tetratricopeptide 99.4 7E-12 2.4E-16 110.4 14.6 163 486-651 11-175 (186)
66 4e6h_A MRNA 3'-END-processing 99.4 3.8E-09 1.3E-13 110.6 36.5 225 398-630 327-584 (679)
67 4e6h_A MRNA 3'-END-processing 99.4 1.6E-09 5.5E-14 113.4 33.1 436 191-652 47-573 (679)
68 4i17_A Hypothetical protein; T 99.4 2E-11 6.8E-16 111.6 16.6 167 482-651 6-211 (228)
69 3nf1_A KLC 1, kinesin light ch 99.4 7.5E-12 2.6E-16 120.6 14.5 223 427-649 37-307 (311)
70 4abn_A Tetratricopeptide repea 99.3 8.9E-12 3E-16 127.2 13.6 178 468-650 84-288 (474)
71 4i17_A Hypothetical protein; T 99.3 1.4E-10 4.9E-15 105.8 18.7 175 452-631 7-225 (228)
72 2ond_A Cleavage stimulation fa 99.3 1.7E-10 5.9E-15 110.7 20.0 219 397-620 33-275 (308)
73 3ulq_A Response regulator aspa 99.3 1.8E-10 6.1E-15 114.6 20.4 162 486-648 187-367 (383)
74 4a1s_A PINS, partner of inscut 99.3 1.8E-11 6.3E-16 123.2 13.2 270 315-618 50-375 (411)
75 3ro2_A PINS homolog, G-protein 99.3 4.2E-11 1.4E-15 116.7 15.4 274 283-618 10-335 (338)
76 3ulq_A Response regulator aspa 99.3 1.7E-11 5.7E-16 122.1 11.9 293 323-617 22-370 (383)
77 3as5_A MAMA; tetratricopeptide 99.3 3.8E-10 1.3E-14 99.1 18.9 168 452-622 8-180 (186)
78 2ond_A Cleavage stimulation fa 99.2 1.4E-09 4.9E-14 104.2 23.4 213 434-652 33-273 (308)
79 1hz4_A MALT regulatory protein 99.2 4.5E-09 1.5E-13 104.0 26.0 194 455-648 96-321 (373)
80 3edt_B KLC 2, kinesin light ch 99.2 2.1E-10 7.2E-15 108.6 14.2 222 427-648 11-280 (283)
81 3nf1_A KLC 1, kinesin light ch 99.2 5.5E-11 1.9E-15 114.5 9.9 168 451-618 110-310 (311)
82 2yhc_A BAMD, UPF0169 lipoprote 99.2 1.1E-09 3.8E-14 99.5 18.0 65 591-655 152-219 (225)
83 4ga2_A E3 SUMO-protein ligase 99.2 5E-11 1.7E-15 100.3 7.6 139 492-635 6-149 (150)
84 3q15_A PSP28, response regulat 99.1 4.8E-09 1.6E-13 104.0 22.3 54 355-408 107-169 (378)
85 3qky_A Outer membrane assembly 99.1 8.3E-10 2.9E-14 103.1 15.5 180 452-649 15-224 (261)
86 4gyw_A UDP-N-acetylglucosamine 99.1 2.7E-10 9.1E-15 120.9 13.3 165 449-618 6-177 (723)
87 3q15_A PSP28, response regulat 99.1 3.3E-10 1.1E-14 112.3 13.2 221 427-648 111-364 (378)
88 3mv2_B Coatomer subunit epsilo 99.1 9.4E-09 3.2E-13 95.2 20.7 39 359-397 23-62 (310)
89 2fo7_A Synthetic consensus TPR 99.1 1.6E-09 5.5E-14 89.2 13.8 128 521-650 4-133 (136)
90 3qou_A Protein YBBN; thioredox 99.1 1.4E-09 4.7E-14 102.9 14.9 172 472-648 106-283 (287)
91 4ga2_A E3 SUMO-protein ligase 99.1 2.4E-10 8.3E-15 96.1 8.6 123 524-649 3-129 (150)
92 3gyz_A Chaperone protein IPGC; 99.1 6E-10 2.1E-14 93.0 10.2 103 549-651 30-135 (151)
93 3qky_A Outer membrane assembly 99.1 2.3E-09 7.9E-14 100.1 15.4 194 427-640 25-252 (261)
94 3mv2_B Coatomer subunit epsilo 99.1 1.1E-08 3.7E-13 94.7 19.4 158 458-622 106-289 (310)
95 2pzi_A Probable serine/threoni 99.1 3.2E-10 1.1E-14 121.1 10.0 167 463-635 402-583 (681)
96 1qqe_A Vesicular transport pro 99.1 1E-09 3.4E-14 104.3 12.5 188 459-646 44-266 (292)
97 2r5s_A Uncharacterized protein 99.0 1.2E-09 4.3E-14 94.8 11.0 156 488-648 11-172 (176)
98 3rjv_A Putative SEL1 repeat pr 99.0 3E-08 1E-12 88.8 20.4 162 481-651 16-199 (212)
99 3edt_B KLC 2, kinesin light ch 99.0 3.1E-09 1.1E-13 100.4 13.7 225 390-616 11-282 (283)
100 2vsy_A XCC0866; transferase, g 99.0 2.5E-09 8.5E-14 112.4 14.0 158 465-627 2-169 (568)
101 4gco_A Protein STI-1; structur 99.0 3.2E-09 1.1E-13 85.9 11.5 113 514-629 8-124 (126)
102 4gco_A Protein STI-1; structur 99.0 2E-09 6.8E-14 87.1 10.2 103 549-651 7-112 (126)
103 2fo7_A Synthetic consensus TPR 99.0 1.7E-08 5.7E-13 83.0 15.3 131 485-618 3-135 (136)
104 1qqe_A Vesicular transport pro 99.0 6.1E-09 2.1E-13 98.8 14.1 171 467-648 32-227 (292)
105 3urz_A Uncharacterized protein 98.9 6.5E-09 2.2E-13 93.0 12.6 157 456-618 8-189 (208)
106 3u3w_A Transcriptional activat 98.9 1.1E-07 3.7E-12 90.3 21.6 161 488-648 80-265 (293)
107 2vgx_A Chaperone SYCD; alterna 98.9 2.2E-09 7.7E-14 89.8 8.5 96 554-649 21-118 (148)
108 1hz4_A MALT regulatory protein 98.9 1.4E-07 4.9E-12 93.2 22.7 257 84-340 23-320 (373)
109 3urz_A Uncharacterized protein 98.9 1E-08 3.4E-13 91.7 13.0 161 486-652 7-189 (208)
110 2pzi_A Probable serine/threoni 98.9 1.9E-09 6.6E-14 115.1 9.7 149 494-648 402-562 (681)
111 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.1E-08 7.2E-13 90.2 14.4 130 484-619 7-154 (213)
112 2vsy_A XCC0866; transferase, g 98.9 2.2E-08 7.7E-13 105.1 15.4 152 496-652 2-160 (568)
113 3qou_A Protein YBBN; thioredox 98.9 2.8E-08 9.7E-13 93.8 14.5 134 516-652 114-251 (287)
114 2ifu_A Gamma-SNAP; membrane fu 98.8 6.7E-08 2.3E-12 92.4 16.2 220 393-642 4-254 (307)
115 2ifu_A Gamma-SNAP; membrane fu 98.8 1.4E-08 4.9E-13 97.1 10.8 196 430-647 4-222 (307)
116 2xcb_A PCRH, regulatory protei 98.8 2.2E-08 7.5E-13 83.2 10.5 96 554-649 18-115 (142)
117 2qfc_A PLCR protein; TPR, HTH, 98.8 8.9E-08 3.1E-12 90.9 15.8 163 485-647 77-264 (293)
118 2e2e_A Formate-dependent nitri 98.8 1.9E-08 6.4E-13 87.4 10.2 120 496-619 23-148 (177)
119 1a17_A Serine/threonine protei 98.8 6.5E-08 2.2E-12 82.8 13.1 127 520-648 15-145 (166)
120 2r5s_A Uncharacterized protein 98.8 5.3E-08 1.8E-12 84.4 11.6 129 521-652 9-140 (176)
121 1p5q_A FKBP52, FK506-binding p 98.8 4.1E-08 1.4E-12 94.9 12.0 94 554-647 196-292 (336)
122 2yhc_A BAMD, UPF0169 lipoprote 98.8 1.3E-07 4.3E-12 85.8 14.6 162 455-621 7-219 (225)
123 2kck_A TPR repeat; tetratricop 98.8 5.8E-08 2E-12 76.6 10.9 99 554-652 6-109 (112)
124 2vyi_A SGTA protein; chaperone 98.7 9.7E-08 3.3E-12 77.8 12.1 117 519-637 13-131 (131)
125 2lni_A Stress-induced-phosphop 98.7 7.8E-08 2.7E-12 78.7 11.5 113 520-635 18-133 (133)
126 3gyz_A Chaperone protein IPGC; 98.7 1.2E-07 4E-12 79.0 12.2 104 514-620 31-138 (151)
127 4f3v_A ESX-1 secretion system 98.7 2.1E-08 7.3E-13 91.5 8.3 184 464-652 18-240 (282)
128 3upv_A Heat shock protein STI1 98.7 7.6E-08 2.6E-12 78.0 10.9 95 555-649 5-101 (126)
129 1na0_A Designed protein CTPR3; 98.7 1.3E-07 4.5E-12 76.2 12.4 114 519-634 10-125 (125)
130 1hxi_A PEX5, peroxisome target 98.7 3.9E-08 1.3E-12 78.8 8.9 96 555-650 18-115 (121)
131 2c2l_A CHIP, carboxy terminus 98.7 1.4E-08 4.7E-13 95.6 7.0 191 451-649 3-199 (281)
132 1hh8_A P67PHOX, NCF-2, neutrop 98.7 3.7E-07 1.3E-11 81.9 15.7 131 454-585 8-153 (213)
133 2vgx_A Chaperone SYCD; alterna 98.7 3.2E-08 1.1E-12 82.7 8.0 115 505-624 9-127 (148)
134 4gcn_A Protein STI-1; structur 98.7 7.4E-08 2.5E-12 78.0 8.7 93 556-648 10-111 (127)
135 3q49_B STIP1 homology and U bo 98.7 1.9E-07 6.4E-12 76.9 11.4 96 554-649 9-106 (137)
136 2fbn_A 70 kDa peptidylprolyl i 98.7 1.9E-08 6.7E-13 89.1 5.4 96 555-650 89-187 (198)
137 3dra_A Protein farnesyltransfe 98.6 3.9E-06 1.3E-10 78.6 21.1 148 497-647 124-285 (306)
138 3sz7_A HSC70 cochaperone (SGT) 98.6 1.6E-07 5.6E-12 80.1 10.9 110 518-630 11-123 (164)
139 3rjv_A Putative SEL1 repeat pr 98.6 1.7E-07 5.7E-12 84.0 11.0 142 500-649 3-158 (212)
140 1elw_A TPR1-domain of HOP; HOP 98.6 2.8E-07 9.5E-12 73.4 10.9 92 557-648 7-100 (118)
141 2xcb_A PCRH, regulatory protei 98.6 9.1E-08 3.1E-12 79.4 8.0 112 514-628 13-128 (142)
142 3gw4_A Uncharacterized protein 98.6 7.3E-07 2.5E-11 79.2 13.8 152 495-648 4-175 (203)
143 2lni_A Stress-induced-phosphop 98.6 3E-07 1E-11 75.1 10.2 97 554-650 16-114 (133)
144 1na0_A Designed protein CTPR3; 98.6 4.8E-07 1.7E-11 72.8 11.1 98 554-651 9-108 (125)
145 2uy1_A Cleavage stimulation fa 98.6 0.00011 3.6E-09 74.8 30.6 369 88-510 7-411 (493)
146 2e2e_A Formate-dependent nitri 98.5 6E-07 2.1E-11 77.7 12.0 124 527-653 19-148 (177)
147 2dba_A Smooth muscle cell asso 98.5 1.3E-06 4.5E-11 72.8 13.6 111 519-632 29-145 (148)
148 3sz7_A HSC70 cochaperone (SGT) 98.5 5.6E-07 1.9E-11 76.8 11.4 95 554-648 11-107 (164)
149 1elw_A TPR1-domain of HOP; HOP 98.5 1E-06 3.5E-11 69.9 12.3 110 519-630 5-116 (118)
150 3upv_A Heat shock protein STI1 98.5 5.3E-07 1.8E-11 72.9 10.5 109 520-631 6-123 (126)
151 3u3w_A Transcriptional activat 98.5 4.4E-06 1.5E-10 79.1 18.4 158 458-615 81-266 (293)
152 3dra_A Protein farnesyltransfe 98.5 3E-05 1E-09 72.7 23.4 224 396-628 49-301 (306)
153 2hr2_A Hypothetical protein; a 98.5 3.4E-07 1.2E-11 75.2 8.6 62 587-648 58-130 (159)
154 2dba_A Smooth muscle cell asso 98.5 8.1E-07 2.8E-11 74.1 11.2 99 553-651 27-130 (148)
155 4f3v_A ESX-1 secretion system 98.5 8E-07 2.7E-11 81.2 11.7 138 486-628 105-249 (282)
156 2vyi_A SGTA protein; chaperone 98.5 9.7E-07 3.3E-11 71.7 11.0 98 554-651 12-111 (131)
157 2qfc_A PLCR protein; TPR, HTH, 98.5 1.8E-06 6E-11 81.9 14.2 163 453-615 76-266 (293)
158 2xev_A YBGF; tetratricopeptide 98.5 4.9E-07 1.7E-11 73.4 8.9 93 526-621 10-111 (129)
159 2uy1_A Cleavage stimulation fa 98.5 7.6E-05 2.6E-09 75.8 26.9 199 435-648 197-412 (493)
160 3k9i_A BH0479 protein; putativ 98.5 1.4E-07 4.9E-12 75.1 5.4 81 568-648 4-89 (117)
161 3gw4_A Uncharacterized protein 98.4 2.4E-06 8.1E-11 75.8 13.3 155 463-617 3-178 (203)
162 1wao_1 Serine/threonine protei 98.4 5E-07 1.7E-11 91.7 9.8 119 523-644 11-134 (477)
163 1kt0_A FKBP51, 51 kDa FK506-bi 98.4 1.3E-06 4.5E-11 88.3 12.5 94 554-647 317-413 (457)
164 3q49_B STIP1 homology and U bo 98.4 1.3E-06 4.5E-11 71.7 10.1 111 517-630 8-126 (137)
165 1a17_A Serine/threonine protei 98.4 1.6E-06 5.6E-11 73.9 10.9 98 554-651 13-112 (166)
166 2if4_A ATFKBP42; FKBP-like, al 98.4 7.1E-07 2.4E-11 86.3 9.4 149 483-651 179-330 (338)
167 3rkv_A Putative peptidylprolyl 98.4 6.6E-07 2.3E-11 76.1 8.2 101 520-620 13-131 (162)
168 1elr_A TPR2A-domain of HOP; HO 98.4 9.2E-07 3.1E-11 71.8 8.5 110 520-632 6-124 (131)
169 2fbn_A 70 kDa peptidylprolyl i 98.4 3E-07 1E-11 81.4 5.3 97 554-650 38-152 (198)
170 1hxi_A PEX5, peroxisome target 98.3 2E-06 6.7E-11 68.7 9.0 97 521-620 20-119 (121)
171 2c2l_A CHIP, carboxy terminus 98.3 2.5E-06 8.6E-11 80.0 11.1 112 517-631 3-117 (281)
172 2xev_A YBGF; tetratricopeptide 98.3 7.5E-06 2.6E-10 66.2 12.4 94 557-650 5-106 (129)
173 4gcn_A Protein STI-1; structur 98.3 2.3E-06 7.7E-11 69.1 9.1 102 520-625 10-121 (127)
174 3lvg_A Clathrin heavy chain 1; 98.3 3.5E-06 1.2E-10 80.6 11.4 432 43-540 53-534 (624)
175 3ro3_A PINS homolog, G-protein 98.3 2.7E-06 9.2E-11 72.1 9.9 128 521-648 12-157 (164)
176 4b4t_Q 26S proteasome regulato 98.3 5.1E-06 1.8E-10 83.8 13.2 189 460-648 12-244 (434)
177 1ihg_A Cyclophilin 40; ppiase 98.3 2.3E-06 7.9E-11 83.6 9.9 137 484-642 224-363 (370)
178 1p5q_A FKBP52, FK506-binding p 98.3 5.4E-06 1.9E-10 80.0 12.4 127 483-614 147-293 (336)
179 2kck_A TPR repeat; tetratricop 98.3 4.8E-06 1.7E-10 65.2 9.7 99 520-620 8-111 (112)
180 1elr_A TPR2A-domain of HOP; HO 98.3 3.7E-06 1.3E-10 68.1 9.1 96 555-650 5-109 (131)
181 3rkv_A Putative peptidylprolyl 98.3 1.6E-06 5.5E-11 73.7 7.1 94 557-650 14-127 (162)
182 3k9i_A BH0479 protein; putativ 98.2 1.1E-06 3.7E-11 69.9 5.5 93 531-624 3-99 (117)
183 2l6j_A TPR repeat-containing p 98.2 4.1E-07 1.4E-11 71.5 3.0 92 553-644 3-102 (111)
184 3ma5_A Tetratricopeptide repea 98.2 5.4E-06 1.8E-10 63.5 8.7 65 585-649 6-70 (100)
185 1klx_A Cysteine rich protein B 98.2 7.6E-06 2.6E-10 67.0 9.6 112 532-651 9-128 (138)
186 1dce_A Protein (RAB geranylger 98.2 5.3E-05 1.8E-09 78.3 18.0 168 466-638 43-244 (567)
187 3n71_A Histone lysine methyltr 98.2 5.6E-06 1.9E-10 83.3 10.3 126 527-652 318-467 (490)
188 3q7a_A Farnesyltransferase alp 98.2 0.00055 1.9E-08 64.8 23.0 223 79-306 58-330 (349)
189 2hr2_A Hypothetical protein; a 98.2 2.4E-06 8.4E-11 70.1 6.1 102 523-627 16-143 (159)
190 2if4_A ATFKBP42; FKBP-like, al 98.1 6.8E-06 2.3E-10 79.3 9.5 149 452-620 179-333 (338)
191 1zu2_A Mitochondrial import re 98.1 2E-06 6.8E-11 70.4 4.5 84 568-651 16-122 (158)
192 1na3_A Designed protein CTPR2; 98.1 1.2E-05 4.2E-10 60.1 8.7 81 554-634 9-91 (91)
193 3dss_A Geranylgeranyl transfer 98.1 0.00048 1.6E-08 64.9 21.2 177 469-648 91-303 (331)
194 2kat_A Uncharacterized protein 98.1 6.9E-06 2.3E-10 64.9 7.3 63 585-647 18-80 (115)
195 3ro3_A PINS homolog, G-protein 98.1 1.8E-05 6.1E-10 66.9 10.3 133 485-617 11-160 (164)
196 1ihg_A Cyclophilin 40; ppiase 98.0 1.1E-05 3.7E-10 78.8 9.0 66 585-650 272-337 (370)
197 4b4t_Q 26S proteasome regulato 98.0 2.4E-05 8.1E-10 78.9 11.6 159 490-648 11-203 (434)
198 3q7a_A Farnesyltransferase alp 98.0 0.00011 3.8E-09 69.5 14.9 154 493-651 64-239 (349)
199 3bee_A Putative YFRE protein; 98.0 3.7E-05 1.3E-09 57.3 9.1 69 584-652 4-75 (93)
200 1kt0_A FKBP51, 51 kDa FK506-bi 98.0 2.5E-05 8.6E-10 78.9 10.2 66 586-651 317-382 (457)
201 3dss_A Geranylgeranyl transfer 97.9 0.00047 1.6E-08 65.0 17.2 183 464-650 41-268 (331)
202 2l6j_A TPR repeat-containing p 97.9 4E-05 1.4E-09 59.8 8.3 67 585-651 3-69 (111)
203 1wao_1 Serine/threonine protei 97.9 3.5E-05 1.2E-09 78.2 9.5 94 558-651 10-105 (477)
204 1dce_A Protein (RAB geranylger 97.9 0.00011 3.7E-09 76.0 13.0 153 494-651 39-223 (567)
205 1na3_A Designed protein CTPR2; 97.8 8.1E-05 2.8E-09 55.4 7.9 66 585-650 8-73 (91)
206 1zu2_A Mitochondrial import re 97.8 3.8E-05 1.3E-09 62.9 6.2 108 533-650 17-148 (158)
207 1klx_A Cysteine rich protein B 97.7 0.00032 1.1E-08 57.1 11.6 112 497-617 9-128 (138)
208 2kat_A Uncharacterized protein 97.7 0.00015 5.3E-09 56.9 8.2 81 536-619 3-86 (115)
209 2kc7_A BFR218_protein; tetratr 97.6 6.1E-05 2.1E-09 57.3 4.9 78 560-645 6-86 (99)
210 2kc7_A BFR218_protein; tetratr 97.5 0.00023 8E-09 54.0 7.3 60 592-651 6-66 (99)
211 3lvg_A Clathrin heavy chain 1; 97.5 0.00035 1.2E-08 67.2 9.4 239 143-401 52-325 (624)
212 3n71_A Histone lysine methyltr 97.5 0.00017 5.7E-09 72.7 7.0 87 562-648 317-421 (490)
213 3ma5_A Tetratricopeptide repea 97.4 0.00029 1E-08 53.6 6.5 65 554-618 7-73 (100)
214 3qww_A SET and MYND domain-con 97.4 0.00019 6.5E-09 70.9 6.2 85 530-614 310-410 (433)
215 3ly7_A Transcriptional activat 97.3 0.0037 1.3E-07 59.1 13.7 136 481-618 192-342 (372)
216 3ly7_A Transcriptional activat 97.3 0.0016 5.6E-08 61.5 11.2 134 514-651 190-341 (372)
217 3qwp_A SET and MYND domain-con 97.3 0.00035 1.2E-08 69.2 7.0 100 525-624 294-414 (429)
218 3qww_A SET and MYND domain-con 97.2 0.0015 5E-08 64.6 10.3 62 587-648 341-410 (433)
219 1qsa_A Protein (soluble lytic 97.2 0.14 4.6E-06 52.9 25.1 115 497-614 228-347 (618)
220 1wy6_A Hypothetical protein ST 97.1 0.054 1.9E-06 41.9 15.7 147 487-652 9-157 (172)
221 2v5f_A Prolyl 4-hydroxylase su 97.0 0.0029 9.9E-08 48.3 8.3 75 553-627 4-87 (104)
222 3qwp_A SET and MYND domain-con 97.0 0.0022 7.5E-08 63.5 9.5 88 492-579 296-396 (429)
223 3u64_A Protein TP_0956; tetrat 96.9 0.003 1E-07 57.0 8.8 71 586-656 199-276 (301)
224 3mkq_A Coatomer beta'-subunit; 96.8 0.041 1.4E-06 60.2 18.9 102 462-581 662-763 (814)
225 3bee_A Putative YFRE protein; 96.8 0.0099 3.4E-07 44.0 9.2 69 551-619 3-76 (93)
226 1pc2_A Mitochondria fission pr 96.8 0.0045 1.5E-07 50.0 7.7 91 532-624 12-109 (152)
227 1pc2_A Mitochondria fission pr 96.5 0.0047 1.6E-07 49.9 6.1 80 571-650 15-101 (152)
228 2v5f_A Prolyl 4-hydroxylase su 96.2 0.017 5.7E-07 44.0 7.6 64 587-650 6-76 (104)
229 3mkq_B Coatomer subunit alpha; 95.9 0.27 9.3E-06 40.8 13.9 102 462-581 15-116 (177)
230 3mkq_A Coatomer beta'-subunit; 95.8 0.25 8.7E-06 53.9 17.8 41 259-301 611-652 (814)
231 1nzn_A CGI-135 protein, fissio 95.7 0.17 5.9E-06 39.2 11.1 89 534-624 17-112 (126)
232 3mkq_B Coatomer subunit alpha; 95.4 0.54 1.9E-05 39.0 13.9 128 491-646 13-141 (177)
233 4h7y_A Dual specificity protei 95.2 0.1 3.5E-06 41.4 8.3 104 517-622 12-130 (161)
234 4gns_B Protein CSD3, chitin bi 95.2 0.058 2E-06 56.6 9.1 52 595-646 346-397 (754)
235 3u64_A Protein TP_0956; tetrat 95.1 0.037 1.3E-06 50.1 6.4 81 535-618 180-272 (301)
236 1wy6_A Hypothetical protein ST 94.2 1.5 5.1E-05 34.1 13.1 139 188-345 19-157 (172)
237 2wpv_A GET4, UPF0363 protein Y 94.0 3.8 0.00013 37.8 20.7 135 247-392 33-177 (312)
238 4ady_A RPN2, 26S proteasome re 93.9 8.4 0.00029 41.6 29.8 261 254-520 381-663 (963)
239 1nzn_A CGI-135 protein, fissio 93.9 0.11 3.7E-06 40.3 5.7 81 570-650 17-104 (126)
240 3lpz_A GET4 (YOR164C homolog); 93.4 5.1 0.00017 37.3 22.0 135 248-393 36-180 (336)
241 2ff4_A Probable regulatory pro 93.2 0.21 7.2E-06 48.6 8.0 65 591-655 176-245 (388)
242 1qsa_A Protein (soluble lytic 92.9 9.7 0.00033 39.3 35.9 372 244-640 69-470 (618)
243 3ffl_A Anaphase-promoting comp 92.2 0.93 3.2E-05 36.9 8.9 121 512-646 12-148 (167)
244 1y8m_A FIS1; mitochondria, unk 91.8 1.6 5.4E-05 34.5 9.6 72 551-622 36-113 (144)
245 3ffl_A Anaphase-promoting comp 91.1 0.97 3.3E-05 36.8 8.0 29 555-583 123-151 (167)
246 3o48_A Mitochondria fission 1 90.7 0.71 2.4E-05 35.9 6.6 73 551-623 37-115 (134)
247 3o48_A Mitochondria fission 1 90.0 1.8 6.3E-05 33.6 8.3 45 604-648 61-106 (134)
248 1y8m_A FIS1; mitochondria, unk 89.8 2.7 9.4E-05 33.1 9.3 66 583-648 36-105 (144)
249 4h7y_A Dual specificity protei 89.7 6.6 0.00023 31.3 12.7 55 190-246 74-128 (161)
250 4b4t_P 26S proteasome regulato 89.0 19 0.00064 35.5 24.7 172 282-481 141-324 (445)
251 4ady_A RPN2, 26S proteasome re 88.5 31 0.0011 37.4 35.6 252 356-613 381-656 (963)
252 2uwj_G Type III export protein 87.3 6.7 0.00023 28.4 9.2 88 123-215 19-106 (115)
253 3lpz_A GET4 (YOR164C homolog); 87.0 19 0.00067 33.4 21.8 171 349-546 35-215 (336)
254 4b4t_P 26S proteasome regulato 86.9 25 0.00085 34.6 17.5 97 485-581 139-245 (445)
255 2p58_C Putative type III secre 86.4 7.2 0.00025 28.3 8.6 88 123-215 20-107 (116)
256 3ltj_A Alpharep-4; protein eng 86.3 15 0.0005 31.3 13.9 43 48-90 32-74 (201)
257 2ff4_A Probable regulatory pro 85.9 5.2 0.00018 38.7 10.9 73 486-559 174-250 (388)
258 3ltm_A Alpha-REP4; protein eng 85.8 16 0.00055 31.3 14.0 92 143-239 93-184 (211)
259 1zbp_A Hypothetical protein VP 85.4 8.4 0.00029 34.3 10.8 117 493-621 7-135 (273)
260 1v54_E Cytochrome C oxidase po 85.4 3.7 0.00013 30.0 6.9 60 501-562 28-87 (109)
261 2wpv_A GET4, UPF0363 protein Y 84.7 24 0.00083 32.5 19.9 173 348-547 32-217 (312)
262 1zbp_A Hypothetical protein VP 84.3 2.2 7.6E-05 38.0 6.6 58 562-619 5-64 (273)
263 3txn_A 26S proteasome regulato 83.4 33 0.0011 32.9 15.5 23 457-479 24-46 (394)
264 1v54_E Cytochrome C oxidase po 83.0 4.9 0.00017 29.3 6.7 48 193-240 27-74 (109)
265 4gns_B Protein CSD3, chitin bi 82.6 4 0.00014 43.0 8.9 52 491-544 345-397 (754)
266 4fhn_B Nucleoporin NUP120; pro 80.8 38 0.0013 38.2 16.8 159 49-225 817-985 (1139)
267 2y69_E Cytochrome C oxidase su 78.1 8.5 0.00029 29.9 6.9 60 501-562 71-130 (152)
268 1wdy_A 2-5A-dependent ribonucl 77.8 25 0.00087 31.6 12.2 20 50-69 42-61 (285)
269 4fhn_B Nucleoporin NUP120; pro 77.3 38 0.0013 38.2 15.4 83 556-639 901-990 (1139)
270 3esl_A Checkpoint serine/threo 76.8 23 0.0008 29.9 10.0 46 570-615 95-144 (202)
271 4b4t_R RPN7, 26S proteasome re 76.2 12 0.00042 36.6 9.8 93 554-646 131-234 (429)
272 1wdy_A 2-5A-dependent ribonucl 74.8 42 0.0014 30.0 12.8 117 49-173 7-130 (285)
273 2y69_E Cytochrome C oxidase su 74.4 11 0.00037 29.3 6.7 59 194-254 71-129 (152)
274 3ltm_A Alpha-REP4; protein eng 74.1 40 0.0014 28.7 16.9 154 42-204 31-184 (211)
275 4b4t_R RPN7, 26S proteasome re 73.2 9.8 0.00034 37.3 8.2 95 454-548 133-238 (429)
276 2uwj_G Type III export protein 69.6 30 0.001 25.2 10.1 60 460-522 47-106 (115)
277 3bqo_A Telomeric repeat-bindin 69.1 20 0.00068 29.9 7.6 72 571-642 95-173 (211)
278 2p58_C Putative type III secre 68.4 32 0.0011 25.1 10.2 60 460-522 48-107 (116)
279 3txn_A 26S proteasome regulato 66.8 92 0.0032 29.8 18.8 91 457-547 104-210 (394)
280 4a1g_A Mitotic checkpoint seri 65.7 50 0.0017 26.5 9.2 49 605-653 84-134 (152)
281 2wvi_A Mitotic checkpoint seri 61.5 58 0.002 26.5 9.0 31 585-615 95-125 (164)
282 3esl_A Checkpoint serine/threo 60.4 67 0.0023 27.2 9.4 56 497-553 93-149 (202)
283 3hra_A Ankyrin repeat family p 57.3 73 0.0025 26.5 10.0 150 53-210 11-172 (201)
284 3mv2_A Coatomer subunit alpha; 57.1 1.1E+02 0.0039 28.0 11.0 59 577-649 196-256 (325)
285 4b4t_S RPN3, 26S proteasome re 54.1 34 0.0012 34.0 7.7 24 521-544 234-257 (523)
286 1k1a_A B-cell lymphoma 3-encod 52.7 99 0.0034 26.6 10.4 17 52-68 51-67 (241)
287 1ya0_A SMG-7 transcript varian 52.3 38 0.0013 33.8 7.9 53 592-644 158-210 (497)
288 4b4t_S RPN3, 26S proteasome re 48.2 39 0.0013 33.6 7.1 68 554-621 231-305 (523)
289 3eu9_A Huntingtin-interacting 45.5 42 0.0014 29.0 6.7 212 14-240 11-236 (240)
290 1k1a_A B-cell lymphoma 3-encod 45.0 1.1E+02 0.0039 26.2 9.5 26 84-109 15-40 (241)
291 3ltj_A Alpharep-4; protein eng 44.7 1.4E+02 0.0046 24.9 18.4 47 246-292 120-166 (201)
292 4a1g_A Mitotic checkpoint seri 43.7 1.2E+02 0.0042 24.2 8.4 81 469-553 52-135 (152)
293 3kea_A K1L; tropism, ANK repea 43.6 1.8E+02 0.0062 26.0 11.0 15 300-314 210-224 (285)
294 3hra_A Ankyrin repeat family p 43.0 83 0.0028 26.2 8.0 15 298-312 158-172 (201)
295 4gq2_M Nucleoporin NUP120; bet 40.4 1.6E+02 0.0054 32.4 11.2 27 588-614 899-925 (950)
296 3ljn_A Hypothetical protein; a 38.2 1.3E+02 0.0045 28.1 9.3 14 258-271 181-194 (364)
297 2d2s_A Exocyst complex compone 37.9 63 0.0022 28.3 6.2 85 490-578 25-115 (235)
298 4aez_C MAD3, mitotic spindle c 37.5 80 0.0027 27.2 6.5 32 585-616 149-180 (223)
299 2wvi_A Mitotic checkpoint seri 36.9 1.7E+02 0.0058 23.8 9.3 81 469-553 47-130 (164)
300 2fu4_A Ferric uptake regulatio 34.7 80 0.0027 21.8 5.3 62 99-161 6-68 (83)
301 3ljn_A Hypothetical protein; a 34.3 1E+02 0.0034 29.0 7.8 19 53-71 59-77 (364)
302 3jxi_A Vanilloid receptor-rela 33.8 92 0.0031 27.4 7.0 52 85-136 12-72 (260)
303 2fe3_A Peroxide operon regulat 33.7 86 0.0029 24.8 5.9 61 100-161 12-72 (145)
304 2zu6_B Programmed cell death p 33.5 2.5E+02 0.0085 25.7 9.6 202 250-456 6-241 (307)
305 3i5p_A Nucleoporin NUP170; hel 33.3 3.8E+02 0.013 26.8 12.2 69 581-649 173-246 (525)
306 3aji_A 26S proteasome non-ATPa 33.3 2.2E+02 0.0076 24.1 10.2 14 55-68 48-61 (231)
307 2rfa_A Transient receptor pote 31.5 2.4E+02 0.0082 23.9 10.7 19 51-69 7-25 (232)
308 3eu9_A Huntingtin-interacting 31.4 1.8E+02 0.006 24.8 8.4 111 52-171 14-132 (240)
309 3bu8_A Telomeric repeat-bindin 30.6 50 0.0017 28.1 3.9 51 534-584 88-144 (235)
310 2d2s_A Exocyst complex compone 30.5 1.8E+02 0.0062 25.4 7.9 29 619-647 90-118 (235)
311 3t8k_A Uncharacterized protein 30.4 2E+02 0.007 23.6 8.2 50 296-345 131-183 (186)
312 3ygs_P Procaspase 9; apoptosis 30.4 51 0.0017 24.0 3.7 37 58-94 51-87 (97)
313 3kea_A K1L; tropism, ANK repea 30.3 2.9E+02 0.01 24.6 10.4 19 51-69 35-53 (285)
314 3aji_A 26S proteasome non-ATPa 29.4 2.6E+02 0.0088 23.6 11.0 113 50-171 9-129 (231)
315 1n11_A Ankyrin; clathrin, BAND 28.3 4E+02 0.014 25.5 15.3 20 152-171 117-136 (437)
316 3b7b_A Euchromatic histone-lys 27.6 2.8E+02 0.0097 23.5 9.4 204 18-239 16-235 (237)
317 2xig_A Ferric uptake regulatio 27.6 1.5E+02 0.0052 23.5 6.5 64 98-162 15-78 (150)
318 3mkr_B Coatomer subunit alpha; 26.7 3.8E+02 0.013 24.6 9.4 59 577-649 187-247 (320)
319 2zu6_B Programmed cell death p 26.7 3.7E+02 0.013 24.6 10.4 62 179-241 169-232 (307)
320 4ets_A Ferric uptake regulatio 26.5 99 0.0034 25.1 5.2 70 92-162 14-86 (162)
321 2xig_A Ferric uptake regulatio 26.4 1.2E+02 0.0041 24.1 5.7 54 73-126 24-77 (150)
322 1ug3_A EIF4GI, eukaryotic prot 25.5 2.9E+02 0.0098 25.7 8.9 59 251-309 15-77 (339)
323 3mwm_A ZUR, putative metal upt 25.4 89 0.003 24.5 4.6 41 80-120 18-58 (139)
324 1wgl_A TOLL-interacting protei 25.3 74 0.0025 20.5 3.3 47 607-655 11-58 (59)
325 4gq2_M Nucleoporin NUP120; bet 25.3 3E+02 0.01 30.2 10.3 52 50-102 816-867 (950)
326 3b7b_A Euchromatic histone-lys 25.2 2.7E+02 0.0092 23.7 8.5 20 321-340 215-234 (237)
327 2o03_A Probable zinc uptake re 25.1 93 0.0032 24.0 4.6 45 80-124 15-59 (131)
328 2nsz_A Programmed cell death p 24.8 2.1E+02 0.0071 22.0 6.5 24 150-173 12-35 (129)
329 4aez_C MAD3, mitotic spindle c 24.6 2.6E+02 0.009 24.0 7.5 53 500-553 131-184 (223)
330 1mzb_A Ferric uptake regulatio 24.5 1.5E+02 0.0051 23.0 5.8 62 100-162 8-70 (136)
331 3eyy_A Putative iron uptake re 24.4 1.3E+02 0.0044 23.8 5.4 58 101-160 10-67 (145)
332 2fe3_A Peroxide operon regulat 24.2 1.6E+02 0.0053 23.3 5.9 67 60-126 6-72 (145)
333 2crb_A Nuclear receptor bindin 23.8 80 0.0028 22.5 3.4 22 590-611 19-40 (97)
334 2ion_A PDCD4, programmed cell 23.5 2.2E+02 0.0074 22.7 6.5 63 455-517 12-79 (152)
335 4ets_A Ferric uptake regulatio 23.4 1.7E+02 0.0059 23.6 6.1 54 73-126 30-85 (162)
336 2nsz_A Programmed cell death p 22.6 2.6E+02 0.0091 21.4 7.9 63 455-517 10-77 (129)
337 2w57_A Ferric uptake regulatio 22.2 1.8E+02 0.0062 23.1 5.9 62 100-162 7-69 (150)
338 3eyy_A Putative iron uptake re 22.1 94 0.0032 24.6 4.2 61 63-124 6-66 (145)
339 3bu8_A Telomeric repeat-bindin 22.1 2.6E+02 0.009 23.8 6.7 66 499-567 88-160 (235)
340 3ygs_P Procaspase 9; apoptosis 21.9 80 0.0027 22.9 3.4 38 363-400 51-88 (97)
341 2w57_A Ferric uptake regulatio 21.2 1.6E+02 0.0056 23.3 5.5 54 73-126 14-68 (150)
342 2dzn_A Probable 26S proteasome 20.4 3E+02 0.01 23.1 7.7 50 20-70 9-59 (228)
343 1mzb_A Ferric uptake regulatio 20.4 2.4E+02 0.0082 21.8 6.2 52 74-125 16-68 (136)
344 2ion_A PDCD4, programmed cell 20.3 2.7E+02 0.0093 22.2 6.5 24 150-173 14-37 (152)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=2.1e-40 Score=353.84 Aligned_cols=500 Identities=9% Similarity=-0.037 Sum_probs=355.5
Q ss_pred HhHhcCCChhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHH
Q 047767 52 DDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQ 131 (666)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~ 131 (666)
..+.+.|.+..+...|..++.++...|+.++..|.+.|++++|..+|++|.. ..|+..++..++.+|...|++++|..
T Consensus 61 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~ 138 (597)
T 2xpi_A 61 NNTSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKC 138 (597)
T ss_dssp ---------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHH
Confidence 3456778888899999999989999999999999999999999999999985 45788999999999999999999999
Q ss_pred HHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCC-------------------CcccHHHHHHHHHhcCCc
Q 047767 132 IHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPER-------------------NLATWNLMLRAFCELSRP 192 (666)
Q Consensus 132 ~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~-------------------~~~~~~~li~~~~~~~~~ 192 (666)
+++.+... +++..+++.++.+|.+.|++++|.++|+++... +..+|+.++.+|.+.|++
T Consensus 139 ~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 216 (597)
T 2xpi_A 139 LLTKEDLY--NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNF 216 (597)
T ss_dssp HHHHTCGG--GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc--ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCH
Confidence 99988643 688899999999999999999999999965433 367899999999999999
Q ss_pred hHHHHHHHHHHHcCCCCC-HhhHHHHHHHhcccCChHHH--HHH-HHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHH
Q 047767 193 DEVLRMYNKMKAEGVEPN-GLSFCYMVRGCSIGMLLDEG--KQL-HSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKK 268 (666)
Q Consensus 193 ~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a--~~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 268 (666)
++|++.|++|.+.+ |+ ...+..+...+...+..+.+ ..+ +..+...+ ......+++.++..|.+.|++++|.+
T Consensus 217 ~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~~~~~~~~~~~g~~~~A~~ 293 (597)
T 2xpi_A 217 DRAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKED-AAFLRSLYMLKLNKTSHEDELRRAED 293 (597)
T ss_dssp HHHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGG-HHHHHHHHHTTSCTTTTHHHHHHHHH
T ss_pred HHHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccch-HHHHHHHHHHHHHHHcCcchHHHHHH
Confidence 99999999998864 43 44555555544443332222 122 44455545 55666777888888999999999999
Q ss_pred HhccCCC--CChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCC
Q 047767 269 SFDFIPV--DDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH 346 (666)
Q Consensus 269 ~~~~~~~--~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~ 346 (666)
+|+.+.. ++..+|+.++..|.+.|++++|..+|+++.+.+. .+..++..++.++.+.|+.++|..+++.+.+....
T Consensus 294 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~- 371 (597)
T 2xpi_A 294 YLSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEIDP-YNLDVYPLHLASLHESGEKNKLYLISNDLVDRHPE- 371 (597)
T ss_dssp HHHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-
T ss_pred HHHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcCc-ccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhhCcc-
Confidence 9999876 7888999999999999999999999999987542 24556666666666666666666666666543211
Q ss_pred CchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhh
Q 047767 347 GSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALS 426 (666)
Q Consensus 347 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~ 426 (666)
+..+|+.++..|.+.|++++|.++|+++.+..
T Consensus 372 --------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~---------------- 403 (597)
T 2xpi_A 372 --------------------------------KAVTWLAVGIYYLCVNKISEARRYFSKSSTMD---------------- 403 (597)
T ss_dssp --------------------------------SHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC----------------
T ss_pred --------------------------------cHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC----------------
Confidence 23334444555555555555555555554321
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChhHHH
Q 047767 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMGREAL 503 (666)
Q Consensus 427 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~ 503 (666)
+.+..+++.++..|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|.
T Consensus 404 ----------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 461 (597)
T 2xpi_A 404 ----------------------PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLFQGTHLPYLFLGMQHMQLGNILLAN 461 (597)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTTTCSHHHHHHHHHHHHHTCHHHHH
T ss_pred ----------------------CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCCHHHHH
Confidence 1223344555555666666666666666544 235667777778888888888888
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhh---CCCCC--chHHHHHHHHHHhcCChHHHHHHHH
Q 047767 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY---GIDAD--RQHYSCMIDMLGRAGILDKAEELLQ 578 (666)
Q Consensus 504 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~--~~~~~~l~~~~~~~g~~~~A~~~~~ 578 (666)
++|+++.+.. +.+..+|..++..|.+.|++++|.++|+++.+.. +..|+ ..+|..++.+|.+.|++++|.++++
T Consensus 462 ~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 540 (597)
T 2xpi_A 462 EYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALN 540 (597)
T ss_dssp HHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 8888877742 3356677788888888888888888888776542 44666 5678888888888888888888887
Q ss_pred hCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 579 QTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 579 ~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
++. ..| +..+|..++.+|...|++++|.+.++++++.+|+++.++..|+.+|.
T Consensus 541 ~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~ 595 (597)
T 2xpi_A 541 QGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISPNEIMASDLLKRALE 595 (597)
T ss_dssp HHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTC
T ss_pred HHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCCCChHHHHHHHHHHh
Confidence 754 233 67788888888888888888888888888888888888888887764
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=4.2e-39 Score=343.83 Aligned_cols=482 Identities=9% Similarity=-0.026 Sum_probs=395.3
Q ss_pred hHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHH
Q 047767 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234 (666)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 234 (666)
+...|....+...+..++.++...|+.++..|.+.|++++|+.+|++|.. ..|+..++..+..+|...|++++|..++
T Consensus 63 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~A~~~~ 140 (597)
T 2xpi_A 63 TSTDGSFLKERNAQNTDSLSREDYLRLWRHDALMQQQYKCAAFVGEKVLD--ITGNPNDAFWLAQVYCCTGDYARAKCLL 140 (597)
T ss_dssp -------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HHCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ccccCccCCCCCccccchHHHHHHHHHHHHHHHHccCchHHHHHHHHHHh--hCCCchHHHHHHHHHHHcCcHHHHHHHH
Confidence 45567777788888888888899999999999999999999999999985 4688899999999999999999999999
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCC-------------------ChhhHHHHHHHHHcCCChH
Q 047767 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVD-------------------DVISWNSIVSIYADYDLIF 295 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~-------------------~~~~~~~li~~~~~~g~~~ 295 (666)
+.+... +++..+++.++.+|.+.|++++|.++|+++.+. +..+|+.++.+|.+.|+++
T Consensus 141 ~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 217 (597)
T 2xpi_A 141 TKEDLY---NRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFD 217 (597)
T ss_dssp HHTCGG---GTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHhcc---ccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHHcCCHH
Confidence 988653 678899999999999999999999999965433 4789999999999999999
Q ss_pred HHHHHHHHhHhcCCCCCh-hhHHHHHHHHhccCChhhHH--HH-HHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH
Q 047767 296 DALELFFRMQLCRKRPSI-RSFVEFLNFASRTGNVYFGK--QI-HGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV 371 (666)
Q Consensus 296 ~a~~~~~~m~~~~~~p~~-~t~~~ll~~~~~~~~~~~a~--~~-~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 371 (666)
+|.+.|++|.+.+ |+. ..+..+...+...+..+... .+ +..+...+... ...++..++..|.+.|++++|.++
T Consensus 218 ~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~~A~~~ 294 (597)
T 2xpi_A 218 RAKECYKEALMVD--AKCYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAF-LRSLYMLKLNKTSHEDELRRAEDY 294 (597)
T ss_dssp HHHHHHHHHHHHC--TTCHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHH-HHHHHHTTSCTTTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHhC--chhhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHH-HHHHHHHHHHHHcCcchHHHHHHH
Confidence 9999999998754 443 33443433333322222111 11 23333333333 445566678889999999999999
Q ss_pred hccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCC
Q 047767 372 FESAPG--RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFE 449 (666)
Q Consensus 372 ~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~ 449 (666)
|+.+.. ++..+|+.++.+|.+.|++++|+.+|+++.+.+ +.+..++..++.+ +...|+.+.|..++..+.+.. +
T Consensus 295 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~~~~~~-~ 370 (597)
T 2xpi_A 295 LSSINGLEKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLAS--LHESGEKNKLYLISNDLVDRH-P 370 (597)
T ss_dssp HHTSTTGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHH--HHHHTCHHHHHHHHHHHHHHC-T
T ss_pred HHHhhcCCchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHH--HHHhCCHHHHHHHHHHHHhhC-c
Confidence 999987 688899999999999999999999999999875 3366778888888 889999999999999998654 5
Q ss_pred CchHHHHHHHHHHHhhCCHHHHHHHhccCC---CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047767 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526 (666)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 526 (666)
.+..+++.++..|.+.|++++|.++|+++. ..+..+|+.++.+|.+.|++++|+++|+++.+.+ +.+..+|..++.
T Consensus 371 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~ 449 (597)
T 2xpi_A 371 EKAVTWLAVGIYYLCVNKISEARRYFSKSSTMDPQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF-QGTHLPYLFLGM 449 (597)
T ss_dssp TSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT-TTCSHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHH
Confidence 678899999999999999999999999876 3568899999999999999999999999999853 346679999999
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-------CCCC--HHHHHHHHHHHH
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-------GGGD--CMMWSSLLRSCR 597 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~--~~~~~~l~~~~~ 597 (666)
+|.+.|++++|.++|+++.+. .+.+..+|..++.+|.+.|++++|+++|+++. ..|+ ..+|..++.+|.
T Consensus 450 ~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~ 527 (597)
T 2xpi_A 450 QHMQLGNILLANEYLQSSYAL--FQYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYR 527 (597)
T ss_dssp HHHHHTCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHH
Confidence 999999999999999999975 23458899999999999999999999999873 3676 789999999999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+.|++++|++.++++++.+|+++.+|..++.+|...|++++|.++++++.+...
T Consensus 528 ~~g~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~~p 581 (597)
T 2xpi_A 528 KLKMYDAAIDALNQGLLLSTNDANVHTAIALVYLHKKIPGLAITHLHESLAISP 581 (597)
T ss_dssp HTTCHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhcCC
Confidence 999999999999999999999999999999999999999999999999987544
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.96 E-value=1.7e-25 Score=224.47 Aligned_cols=370 Identities=14% Similarity=0.118 Sum_probs=259.3
Q ss_pred HHHHHhcCCchHHHHHHHHHHHcCCCCC-HhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccC
Q 047767 183 LRAFCELSRPDEVLRMYNKMKAEGVEPN-GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACG 261 (666)
Q Consensus 183 i~~~~~~~~~~~a~~~~~~m~~~~~~p~-~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 261 (666)
...+.+.|++++|.+.++.+.+. .|+ ...+..+...+...|++++|...++...+.. +.+..++..+...+.+.|
T Consensus 6 a~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~--p~~~~~~~~lg~~~~~~g 81 (388)
T 1w3b_A 6 AHREYQAGDFEAAERHCMQLWRQ--EPDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN--PLLAEAYSNLGNVYKERG 81 (388)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHHCC
Confidence 34455677777777777766654 333 3334444444566677777777776666654 555556666666666666
Q ss_pred ChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHH
Q 047767 262 SLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338 (666)
Q Consensus 262 ~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 338 (666)
++++|...|+.+. +.+..+|..+...+.+.|++++|...|+++.+. .|+
T Consensus 82 ~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~-------------------------- 133 (388)
T 1w3b_A 82 QLQEAIEHYRHALRLKPDFIDGYINLAAALVAAGDMEGAVQAYVSALQY--NPD-------------------------- 133 (388)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH--CTT--------------------------
T ss_pred CHHHHHHHHHHHHHcCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh--CCC--------------------------
Confidence 6666666555443 223345555555566666666666666555442 232
Q ss_pred HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCH
Q 047767 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPG---RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDE 415 (666)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~ 415 (666)
...++..+...+...|++++|...|+++.. .+..+|..+...+...|++++|...|+++.+.+ |+
T Consensus 134 ---------~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~- 201 (388)
T 1w3b_A 134 ---------LYCVRSDLGNLLKALGRLEEAKACYLKAIETQPNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PN- 201 (388)
T ss_dssp ---------CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TT-
T ss_pred ---------cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CC-
Confidence 334444444444455555555554444322 134456667777777777777777777776532 22
Q ss_pred HHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHH
Q 047767 416 VTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNG 492 (666)
Q Consensus 416 ~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~ 492 (666)
+...+..+...+...|++++|...|++..+ .+..++..+..+
T Consensus 202 -----------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 202 -----------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLSPNHAVVHGNLACV 246 (388)
T ss_dssp -----------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred -----------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcCCHHHHHHHHHH
Confidence 233444566667778888888888776552 357788899999
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChH
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILD 571 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 571 (666)
+...|++++|+..++++.+ ..|+ ..+|..+...+.+.|++++|.+.++++.+. .+.+..++..++..+.+.|+++
T Consensus 247 ~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~g~~~ 322 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIE--LQPHFPDAYCNLANALKEKGSVAEAEDCYNTALRL--CPTHADSLNNLANIKREQGNIE 322 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHH--TCSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTTTCHH
T ss_pred HHHcCCHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CcccHHHHHHHHHHHHHcCCHH
Confidence 9999999999999999998 4564 458889999999999999999999999875 3445888999999999999999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCC
Q 047767 572 KAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635 (666)
Q Consensus 572 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 635 (666)
+|++.++++. ..| +..++..++..+.+.|++++|++.++++++.+|+++.+|..++.++...|+
T Consensus 323 ~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~a~~~lg~~~~~~~~ 388 (388)
T 1w3b_A 323 EAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRISPTFADAYSNMGNTLKEMQD 388 (388)
T ss_dssp HHHHHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTCC
T ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCCHHHHHhHHHHHHHccC
Confidence 9999999865 345 678899999999999999999999999999999999999999999887764
No 4
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=2e-27 Score=241.59 Aligned_cols=182 Identities=10% Similarity=0.169 Sum_probs=151.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcc---------cchhhHHHHHHHHHHhCCCCch
Q 047767 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS---------ANLGSCRLLHCCAIKSGFESNI 452 (666)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~ 452 (666)
.++.+|.+|++.|++++|+++|++|.+.|+.||..||+++|.+ |... +..+.|..+++.|...|+.||.
T Consensus 28 ~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~--c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~ 105 (501)
T 4g26_A 28 LLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYV--CSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNE 105 (501)
T ss_dssp HHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHH--HTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHH--HHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCH
Confidence 3566777788888888888888888888888888888888887 5433 3367788888888888888888
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhccCC----CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047767 453 AVSCSLMDAYSRCGHIELSHQVFEKIP----SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528 (666)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 528 (666)
.+|+++|.+|++.|++++|.++|++|. .||..+|+++|.+|++.|++++|.++|++|.+.|+.||..||+.|+.+|
T Consensus 106 ~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~ 185 (501)
T 4g26_A 106 ATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVS 185 (501)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHH
Confidence 888888888888888888888888876 3888888888888888888888888888888888888888888888888
Q ss_pred cCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh
Q 047767 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR 566 (666)
Q Consensus 529 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 566 (666)
++.|++++|.+++++|.+. +..|+..+|+.++..+.+
T Consensus 186 ~~~g~~d~A~~ll~~Mr~~-g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 186 MDTKNADKVYKTLQRLRDL-VRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp HHTTCHHHHHHHHHHHHHH-TSSBCHHHHHHHHHHHHS
T ss_pred hhCCCHHHHHHHHHHHHHh-CCCcCHHHHHHHHHHHhc
Confidence 8888888888888888887 888888888888888765
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.95 E-value=1.8e-27 Score=241.90 Aligned_cols=184 Identities=17% Similarity=0.195 Sum_probs=158.5
Q ss_pred hhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCC---------hHHHHHHHHHHHHhcCCCchh
Q 047767 76 VTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF---------YTEGIQIHCRVLSLGFGLNLY 146 (666)
Q Consensus 76 ~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~---------~~~a~~~~~~~~~~~~~~~~~ 146 (666)
..++.+|.+|++.|++++|+++|++|.+.|++||..||+.||.+|++.+. ++.|.++|++|.+.|+.||..
T Consensus 27 ~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~~lf~~M~~~G~~Pd~~ 106 (501)
T 4g26_A 27 ALLKQKLDMCSKKGDVLEALRLYDEARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSRGFDIFKQMIVDKVVPNEA 106 (501)
T ss_dssp HHHHHHHHHTTTSCCHHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHHHHHHHHHHTTCCCCHH
T ss_pred HHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHHHHHHHHHHHHhCCCCCHH
Confidence 35777888888888888888888888888888888888888888876554 577888888888888888888
Q ss_pred hhhHHHHHhHhcCChhHHHHhhccCCC----CCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhc
Q 047767 147 IGSPLVDLYMRMGPSVRALDLFDELPE----RNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222 (666)
Q Consensus 147 ~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 222 (666)
+|+.||.+|++.|++++|.++|++|.+ ||..+||+||.+|++.|++++|.++|++|.+.|+.||..||+.+|.+|+
T Consensus 107 tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~G~~Pd~~ty~~Li~~~~ 186 (501)
T 4g26_A 107 TFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVESEVVPEEPELAALLKVSM 186 (501)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHh
Confidence 888888888888888888888887754 7888899999999999999999999999999999999999999999999
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHcc
Q 047767 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSAC 260 (666)
Q Consensus 223 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 260 (666)
+.|++++|.+++++|.+.+ ..|+..||+.++..++..
T Consensus 187 ~~g~~d~A~~ll~~Mr~~g-~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 187 DTKNADKVYKTLQRLRDLV-RQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp HTTCHHHHHHHHHHHHHHT-SSBCHHHHHHHHHHHHSH
T ss_pred hCCCHHHHHHHHHHHHHhC-CCcCHHHHHHHHHHHhcC
Confidence 9999999999999999999 899999988888887753
No 6
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=99.95 E-value=7.6e-25 Score=219.77 Aligned_cols=348 Identities=14% Similarity=0.095 Sum_probs=261.3
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHH
Q 047767 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFD 296 (666)
Q Consensus 220 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~ 296 (666)
.+...|++++|.+.++.+.+.. |.+...+..+...+...|++++|...++... +.+..+|..+...+.+.|++++
T Consensus 8 ~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~p~~~~~~~~lg~~~~~~g~~~~ 85 (388)
T 1w3b_A 8 REYQAGDFEAAERHCMQLWRQE--PDNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQNPLLAEAYSNLGNVYKERGQLQE 85 (388)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHH
Confidence 3456677788888777777764 5555566666666666666666666655432 2344556666666666666666
Q ss_pred HHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCC
Q 047767 297 ALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAP 376 (666)
Q Consensus 297 a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 376 (666)
|...|+++... .|+ +...+..++.++.+.|++++|...|+++.
T Consensus 86 A~~~~~~al~~--~p~-----------------------------------~~~~~~~l~~~~~~~g~~~~A~~~~~~al 128 (388)
T 1w3b_A 86 AIEHYRHALRL--KPD-----------------------------------FIDGYINLAAALVAAGDMEGAVQAYVSAL 128 (388)
T ss_dssp HHHHHHHHHHH--CTT-----------------------------------CHHHHHHHHHHHHHHSCSSHHHHHHHHHH
T ss_pred HHHHHHHHHHc--Ccc-----------------------------------hHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666665442 122 44445555555555555555555554432
Q ss_pred C--C-CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchH
Q 047767 377 G--R-SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIA 453 (666)
Q Consensus 377 ~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 453 (666)
. | +...+..+...+...|++++|...|+++.+. . +.+..
T Consensus 129 ~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~------------------------------------p~~~~ 170 (388)
T 1w3b_A 129 QYNPDLYCVRSDLGNLLKALGRLEEAKACYLKAIET--Q------------------------------------PNFAV 170 (388)
T ss_dssp HHCTTCTHHHHHHHHHHHTTSCHHHHHHHHHHHHHH--C------------------------------------TTCHH
T ss_pred HhCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHh--C------------------------------------CCCHH
Confidence 2 1 2334455555666666666666666666543 1 23455
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhc
Q 047767 454 VSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCN 529 (666)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~ 529 (666)
++..+...+...|++++|...|+++.+ .+...|..+...+...|++++|+..+++..+ ..|+ ..++..+...+.
T Consensus 171 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~ 248 (388)
T 1w3b_A 171 AWSNLGCVFNAQGEIWLAIHHFEKAVTLDPNFLDAYINLGNVLKEARIFDRAVAAYLRALS--LSPNHAVVHGNLACVYY 248 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHH--HCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCcCCHHHHHHHHHHHH
Confidence 666777889999999999999998763 4577899999999999999999999999988 4565 568899999999
Q ss_pred CCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHH
Q 047767 530 HSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 606 (666)
..|++++|.+.++++.+. .|+ ..+|..++.+|.+.|++++|++.++++. .+++..+|..+...+...|++++|+
T Consensus 249 ~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 325 (388)
T 1w3b_A 249 EQGLIDLAIDTYRRAIEL---QPHFPDAYCNLANALKEKGSVAEAEDCYNTALRLCPTHADSLNNLANIKREQGNIEEAV 325 (388)
T ss_dssp HTTCHHHHHHHHHHHHHT---CSSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHhh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCcccHHHHHHHHHHHHHcCCHHHHH
Confidence 999999999999999864 555 7889999999999999999999999875 3457889999999999999999999
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 607 RVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 607 ~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
+.++++++..|+++.++..++.+|...|++++|++.++++.+.
T Consensus 326 ~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 368 (388)
T 1w3b_A 326 RLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI 368 (388)
T ss_dssp HHHHHHTTSCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 9999999999999999999999999999999999999999864
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.92 E-value=2.5e-23 Score=217.44 Aligned_cols=438 Identities=10% Similarity=-0.043 Sum_probs=269.8
Q ss_pred cHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 047767 178 TWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFY 257 (666)
Q Consensus 178 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 257 (666)
.+......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...++.+.+.+ |.+..++..+..++
T Consensus 8 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~ 83 (514)
T 2gw1_A 8 ALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK--PDYSKVLLRRASAN 83 (514)
T ss_dssp HHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC--hHHHHHHHHHHHHH
Confidence 34555666777788888888888777754 677777777777777788888888887777765 55666667777777
Q ss_pred HccCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHH
Q 047767 258 SACGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQ 334 (666)
Q Consensus 258 ~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~ 334 (666)
.+.|++++|...|+.+. +++......++..+........+.+.+..+...+..|+...+..-..........
T Consensus 84 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 158 (514)
T 2gw1_A 84 EGLGKFADAMFDLSVLSLNGDFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENL----- 158 (514)
T ss_dssp HHTTCHHHHHHHHHHHHHSSSCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CC-----
T ss_pred HHHhhHHHHHHHHHHHHhcCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCC-----
Confidence 77777777766665543 1222333333333333222222222222222221111111111000000000000
Q ss_pred HHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC-CcccHHHHHHHHHh---cCChhHHHHHHHHHHH--
Q 047767 335 IHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLH---SGNIKDAVEMFGFMVD-- 408 (666)
Q Consensus 335 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~---~~~~~~a~~~~~~m~~-- 408 (666)
| ....... +.......... ..+..+ +...+......+.. .|++++|+..|+++.+
T Consensus 159 -----------~-~~~~~~~----~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~ 219 (514)
T 2gw1_A 159 -----------P-SVTSMAS----FFGIFKPELTF---ANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLF 219 (514)
T ss_dssp -----------C-CHHHHHH----HHTTSCCCCCC---SSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHH
T ss_pred -----------c-hhHHHHH----HHhhcCHHHHH---HHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHh
Confidence 0 0000000 00000000000 000001 11222223333332 5666666666666665
Q ss_pred ---cCCCCC--------HHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhcc
Q 047767 409 ---EGIGLD--------EVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477 (666)
Q Consensus 409 ---~~~~p~--------~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (666)
....|+ ...+..+... +...|+++.|...+..+.+.... ...+..+...+...|++++|...++.
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~ 295 (514)
T 2gw1_A 220 EEQLDKNNEDEKLKEKLAISLEHTGIF--KFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDK 295 (514)
T ss_dssp HHHTTTSTTCHHHHHHHHHHHHHHHHH--HHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHH
T ss_pred hhhhccCccccccChHHHHHHHHHHHH--HHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 211221 1222233333 55666777777777666665533 66677778888888888888888887
Q ss_pred CCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC
Q 047767 478 IPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553 (666)
Q Consensus 478 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 553 (666)
..+ .+...|..+...+...|++++|...++++.+. .| +...+..+...+...|++++|...++++.+. .+.+
T Consensus 296 ~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~ 371 (514)
T 2gw1_A 296 ALKLDSNNSSVYYHRGQMNFILQNYDQAGKDFDKAKEL--DPENIFPYIQLACLAYRENKFDDCETLFSEAKRK--FPEA 371 (514)
T ss_dssp HHTTCTTCTHHHHHHHHHHHHTTCTTHHHHHHHHHHHT--CSSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHH--STTC
T ss_pred HhhcCcCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHh--ChhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH--cccC
Confidence 653 45678888888999999999999999998884 44 4457888888899999999999999998865 2334
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHh---hCChHHHHHHHHHHHhcCCCCcch
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP----GGGD----CMMWSSLLRSCRV---HGNEIIGRRVANILMELEPVDFAV 622 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~~~p~~~~~ 622 (666)
...+..++..|.+.|++++|...++++. ..++ ...|..++..+.. .|++++|...++++++..|+++.+
T Consensus 372 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 451 (514)
T 2gw1_A 372 PEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLDPRSEQA 451 (514)
T ss_dssp SHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCTTCHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhCcccHHH
Confidence 7788889999999999999999888764 2222 3478888888888 899999999999999999999999
Q ss_pred HHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 623 YSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 623 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+..++.+|...|++++|.+.++++.+...
T Consensus 452 ~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 480 (514)
T 2gw1_A 452 KIGLAQMKLQQEDIDEAITLFEESADLAR 480 (514)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999998876543
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.90 E-value=6.4e-21 Score=199.15 Aligned_cols=454 Identities=9% Similarity=-0.060 Sum_probs=268.3
Q ss_pred hhhhhHHHHhHhcCCChhhHHHHhhcCC--CCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 047767 44 IYSSNRTIDDFVKSGHLNSAKKLFDEMP--ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121 (666)
Q Consensus 44 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 121 (666)
...+..+...+.+.|++++|...|+++. .|+...|..+..++.+.|++++|+..++++.+.+ +.+...+..+..++.
T Consensus 6 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~ 84 (514)
T 2gw1_A 6 ALALKDKGNQFFRNKKYDDAIKYYNWALELKEDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANE 84 (514)
T ss_dssp HHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHH
Confidence 3455667777888888888888888875 4777788888888888888888888888887764 345667888888888
Q ss_pred cCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC----CCcccHHHHHHHHHhcCCchHHHH
Q 047767 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE----RNLATWNLMLRAFCELSRPDEVLR 197 (666)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~ 197 (666)
..|++++|...|+.+.+.+ +++......++..+........+.+.+..+.. ++...++.-...............
T Consensus 85 ~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 163 (514)
T 2gw1_A 85 GLGKFADAMFDLSVLSLNG-DFNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTS 163 (514)
T ss_dssp HTTCHHHHHHHHHHHHHSS-SCCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHH
T ss_pred HHhhHHHHHHHHHHHHhcC-CCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHH
Confidence 8888888888888888765 34444444455544444333333333322211 111111111111111111111111
Q ss_pred HHHHHHHcCCC--------CC-HhhHHHHHHHhc---ccCChHHHHHHHHHHHH-----hCCCCchHHHHHHHHHHHHcc
Q 047767 198 MYNKMKAEGVE--------PN-GLSFCYMVRGCS---IGMLLDEGKQLHSHVIK-----LGWVDVNIFVANALVDFYSAC 260 (666)
Q Consensus 198 ~~~~m~~~~~~--------p~-~~t~~~ll~~~~---~~~~~~~a~~~~~~~~~-----~~~~~~~~~~~~~l~~~~~~~ 260 (666)
+...+...... |+ ...+......+. +.|+++.|...++.+.+ .. ..|+....
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~-~~~~~~~~---------- 232 (514)
T 2gw1_A 164 MASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLD-KNNEDEKL---------- 232 (514)
T ss_dssp HHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTT-TSTTCHHH----------
T ss_pred HHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhc-cCcccccc----------
Confidence 11111111111 11 222222222222 35666666666666655 21 01110000
Q ss_pred CChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHH
Q 047767 261 GSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVT 340 (666)
Q Consensus 261 ~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~ 340 (666)
...+...+..+...+...|++++|...++++.... |+...+..+...+...|+++.|...++.+.
T Consensus 233 -------------~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 297 (514)
T 2gw1_A 233 -------------KEKLAISLEHTGIFKFLKNDPLGAHEDIKKAIELF--PRVNSYIYMALIMADRNDSTEYYNYFDKAL 297 (514)
T ss_dssp -------------HHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHTSSCCTTGGGHHHHHH
T ss_pred -------------ChHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhC--ccHHHHHHHHHHHHHCCCHHHHHHHHHHHh
Confidence 00134566677777888888888888888877653 224445445555555555555555554444
Q ss_pred HhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHH
Q 047767 341 KLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLST 420 (666)
Q Consensus 341 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ 420 (666)
+.... +...+..+...+...|++++|+..+++..+.. |
T Consensus 298 ~~~~~---------------------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~------- 335 (514)
T 2gw1_A 298 KLDSN---------------------------------NSSVYYHRGQMNFILQNYDQAGKDFDKAKELD--P------- 335 (514)
T ss_dssp TTCTT---------------------------------CTHHHHHHHHHHHHTTCTTHHHHHHHHHHHTC--S-------
T ss_pred hcCcC---------------------------------CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--h-------
Confidence 32211 22234444555555556666666555554421 1
Q ss_pred HhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChh
Q 047767 421 TLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGR 500 (666)
Q Consensus 421 ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 500 (666)
.+...+..+...+...|+++
T Consensus 336 ------------------------------------------------------------~~~~~~~~l~~~~~~~~~~~ 355 (514)
T 2gw1_A 336 ------------------------------------------------------------ENIFPYIQLACLAYRENKFD 355 (514)
T ss_dssp ------------------------------------------------------------SCSHHHHHHHHHTTTTTCHH
T ss_pred ------------------------------------------------------------hhHHHHHHHHHHHHHcCCHH
Confidence 12334555666667777777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHh---cCChHHH
Q 047767 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGR---AGILDKA 573 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~---~g~~~~A 573 (666)
+|...++++.+.. +.+...+..+...+...|++++|...++++.....-.++ ...+..++.+|.. .|++++|
T Consensus 356 ~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A 434 (514)
T 2gw1_A 356 DCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDFDKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEA 434 (514)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHH
T ss_pred HHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHH
Confidence 7777777777632 223456777777888888888888888887765222222 3378888888888 8899999
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 574 EELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 574 ~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
.+.++++. ..| +...+..+...+...|++++|...++++++.+|.++..+..+..
T Consensus 435 ~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 491 (514)
T 2gw1_A 435 TNLLEKASKLDPRSEQAKIGLAQMKLQQEDIDEAITLFEESADLARTMEEKLQAITF 491 (514)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSHHHHHHHHHH
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhccccHHHHHHHHH
Confidence 88888764 233 67788888899999999999999999999999998888776643
No 9
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.90 E-value=9.4e-22 Score=201.66 Aligned_cols=344 Identities=11% Similarity=0.053 Sum_probs=228.0
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHhccCC---CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHH
Q 047767 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIP---VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFL 320 (666)
Q Consensus 244 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll 320 (666)
+.+...+..+...+.+.|++++|...|+.+. +.+...|..+...+...|++++|...|+++.+.+ +.+...+..+.
T Consensus 23 p~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 23 MADVEKHLELGKKLLAAGQLADALSQFHAAVDGDPDNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 4444555555555555555555555555432 2244555555555555566666666655555432 11223333333
Q ss_pred HHHhccCChhhHHHHHHHHHHhCCCCCch---hHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChh
Q 047767 321 NFASRTGNVYFGKQIHGYVTKLGFDHGSV---HVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIK 397 (666)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~ 397 (666)
..+...|+++.|...++.+.+.. |.+. ..+..+...+...+ +..+...+...|+++
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~l~~~~~~~~-------------------~~~~a~~~~~~~~~~ 160 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN--PSENEEKEAQSQLIKSDEMQR-------------------LRSQALNAFGSGDYT 160 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHHH-------------------HHHHHHHHHHHTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC--CCChhhHHHHHHHHHHHHHHH-------------------HHHHHHHHHHcCCHH
Confidence 44444444444444444433321 1122 33333333221111 122334466677777
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhcc
Q 047767 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEK 477 (666)
Q Consensus 398 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 477 (666)
+|+..|+++.+.. +.+...+..+...|.+.|++++|.+.|++
T Consensus 161 ~A~~~~~~~~~~~--------------------------------------~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 202 (450)
T 2y4t_A 161 AAIAFLDKILEVC--------------------------------------VWDAELRELRAECFIKEGEPRKAISDLKA 202 (450)
T ss_dssp HHHHHHHHHHHHC--------------------------------------TTCHHHHHHHHHHHHHTTCGGGGHHHHHH
T ss_pred HHHHHHHHHHHhC--------------------------------------CCChHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 7777777776532 22445566677778888888888888887
Q ss_pred CCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHH------------HHHhcCCCcHHHHHHHH
Q 047767 478 IPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCV------------LAGCNHSGMVKEGQLVF 541 (666)
Q Consensus 478 ~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l------------~~~~~~~g~~~~a~~~~ 541 (666)
+.+ .+...|..+..+|...|++++|+..++++.+ ..|+.. .+..+ ...|.+.|++++|...+
T Consensus 203 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~ 280 (450)
T 2y4t_A 203 ASKLKNDNTEAFYKISTLYYQLGDHELSLSEVRECLK--LDQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 280 (450)
T ss_dssp HHHHHCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCChHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 763 5678899999999999999999999999987 456544 44443 77889999999999999
Q ss_pred HHhHHhhCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 542 NSMKSVYGIDAD-----RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 542 ~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
+++.+. .|+ ...+..++.++.+.|++++|++.++++. ..| +...|..++.+|...|++++|...++++++
T Consensus 281 ~~~l~~---~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 281 ESVMKT---EPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHHHH---CCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHhc---CCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 999875 455 3478889999999999999999999865 334 788999999999999999999999999999
Q ss_pred cCCCCcchHHHHH------------HHHhhcC-----CchHHHHHHHH-HHhCCCC
Q 047767 615 LEPVDFAVYSQVS------------NFYSEIG-----EFEVSMQIRET-ALARKLT 652 (666)
Q Consensus 615 ~~p~~~~~~~~l~------------~~~~~~g-----~~~~A~~~~~~-~~~~~~~ 652 (666)
.+|+++.++..++ ..|...| +.+++.+.+++ .......
T Consensus 358 ~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd 413 (450)
T 2y4t_A 358 HNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPD 413 (450)
T ss_dssp TSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGG
T ss_pred hCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCC
Confidence 9999999999999 4455556 56777888876 4444333
No 10
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.90 E-value=6.4e-22 Score=207.95 Aligned_cols=420 Identities=9% Similarity=-0.008 Sum_probs=270.0
Q ss_pred ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 047767 177 ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDF 256 (666)
Q Consensus 177 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 256 (666)
..|..+...+.+.|++++|+..|+++.+.. +.+...+..+..++...|++++|...++.+.+.+ +.+..++..+..+
T Consensus 26 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~ 102 (537)
T 3fp2_A 26 VQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK--PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CchHHHHHHHHHH
Confidence 456777888889999999999999988763 3467778888888889999999999999998886 6778888888888
Q ss_pred HHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhc------CCCCChhhHHHHHHHHhccCChh
Q 047767 257 YSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLC------RKRPSIRSFVEFLNFASRTGNVY 330 (666)
Q Consensus 257 ~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~------~~~p~~~t~~~ll~~~~~~~~~~ 330 (666)
+...|++++|...|+.+. .++...+..+..+...+...+|...++.+... ...|+...+
T Consensus 103 ~~~~g~~~~A~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~-------------- 167 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLS-LNGDFDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSL-------------- 167 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHH--------------
T ss_pred HHHcCCHHHHHHHHHHHh-cCCCCChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHH--------------
Confidence 999999999988886442 22222333344455555667788888777543 122222222
Q ss_pred hHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcc---cHHHHHHHHH--------hcCChhHH
Q 047767 331 FGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE---CCNSLMTSLL--------HSGNIKDA 399 (666)
Q Consensus 331 ~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li~~~~--------~~~~~~~a 399 (666)
..+....+.+.+...+......+.. ....+...+. ..|++++|
T Consensus 168 --------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A 221 (537)
T 3fp2_A 168 --------------------------ASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKS 221 (537)
T ss_dssp --------------------------HHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHH
T ss_pred --------------------------HHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHH
Confidence 2222233333333333333332222 1111111111 12355666
Q ss_pred HHHHHHHHHcCCCCCHH--------HHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHH
Q 047767 400 VEMFGFMVDEGIGLDEV--------TLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELS 471 (666)
Q Consensus 400 ~~~~~~m~~~~~~p~~~--------~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 471 (666)
..+++++.+. .|+.. ++..+-.. +...++++.|...+..+.+... +...+..+...+...|++++|
T Consensus 222 ~~~~~~~l~~--~p~~~~~~~~~~~~~~~~g~~--~~~~~~~~~A~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A 295 (537)
T 3fp2_A 222 TDMYHSLLSA--NTVDDPLRENAALALCYTGIF--HFLKNNLLDAQVLLQESINLHP--TPNSYIFLALTLADKENSQEF 295 (537)
T ss_dssp HHHHHHHHC----CCCHHHHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHCC--CHHHHHHHHHHTCCSSCCHHH
T ss_pred HHHHHHHHHH--CCCcchhhHHHHHHHHHHHHH--HHhcccHHHHHHHHHHHHhcCC--CchHHHHHHHHHHHhcCHHHH
Confidence 6666666543 23211 12222222 5556666666666666666542 355666677777777888888
Q ss_pred HHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHh
Q 047767 472 HQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547 (666)
Q Consensus 472 ~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 547 (666)
...|++..+ .+...|..+...+...|++++|...++++.+. .|+ ...+..+...+...|++++|.+.++++.+.
T Consensus 296 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~ 373 (537)
T 3fp2_A 296 FKFFQKAVDLNPEYPPTYYHRGQMYFILQDYKNAKEDFQKAQSL--NPENVYPYIQLACLLYKQGKFTESEAFFNETKLK 373 (537)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 777776652 45667777888888888888888888888773 343 456777777888888888888888888765
Q ss_pred hCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-C---CC----CHHHHHHHHHHHHhh----------CChHHHHHHH
Q 047767 548 YGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-G---GG----DCMMWSSLLRSCRVH----------GNEIIGRRVA 609 (666)
Q Consensus 548 ~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~---~~----~~~~~~~l~~~~~~~----------~~~~~a~~~~ 609 (666)
.+.+...+..++.+|...|++++|.+.++++. . .+ ....+..+...+... |++++|+..+
T Consensus 374 --~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~ 451 (537)
T 3fp2_A 374 --FPTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLL 451 (537)
T ss_dssp --CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHH
T ss_pred --CCCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHH
Confidence 12336677788888888888888888877653 1 11 222234445556666 8888888888
Q ss_pred HHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 610 NILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 610 ~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+++++.+|+++.++..++.+|...|++++|.+.|+++.+..
T Consensus 452 ~~a~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 492 (537)
T 3fp2_A 452 TKACELDPRSEQAKIGLAQLKLQMEKIDEAIELFEDSAILA 492 (537)
T ss_dssp HHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC
Confidence 88888888888888888888888888888888888776644
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.88 E-value=9.7e-20 Score=191.32 Aligned_cols=446 Identities=9% Similarity=-0.047 Sum_probs=292.3
Q ss_pred chhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHH
Q 047767 75 MVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDL 154 (666)
Q Consensus 75 ~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~ 154 (666)
...|..+...+.+.|++++|+..|+++.+.. +.++..+..+..++...|++++|.+.++.+.+.+ +.+..++..+...
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~ 102 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASA 102 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHH
Confidence 4567777888888899999999998888764 3467788888888888899999999998888775 4456677777777
Q ss_pred hHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHH
Q 047767 155 YMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLH 234 (666)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~ 234 (666)
+...|++++|...|+.+.. +....+..+..+...+....|...++.+.... |+..
T Consensus 103 ~~~~g~~~~A~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~a~~~~~~~l~~~--~~~~---------------------- 157 (537)
T 3fp2_A 103 NESLGNFTDAMFDLSVLSL-NGDFDGASIEPMLERNLNKQAMKVLNENLSKD--EGRG---------------------- 157 (537)
T ss_dssp HHHHTCHHHHHHHHHHHC------------CHHHHHHHHHHHHHHHHHCC------------------------------
T ss_pred HHHcCCHHHHHHHHHHHhc-CCCCChHHHHHHHHHHHHHHHHHHHHHHHHhC--cccc----------------------
Confidence 7777777777777753322 11122222334444444566666666654421 1000
Q ss_pred HHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChh---hHHHHHHHHHcC--------CChHHHHHHHHH
Q 047767 235 SHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVI---SWNSIVSIYADY--------DLIFDALELFFR 303 (666)
Q Consensus 235 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~---~~~~li~~~~~~--------g~~~~a~~~~~~ 303 (666)
.. ..|+. ..+..+....+.+.+...+......+.. ....+...+... |++++|..++++
T Consensus 158 -----~~-~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~ 227 (537)
T 3fp2_A 158 -----SQ-VLPSN----TSLASFFGIFDSHLEVSSVNTSSNYDTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHS 227 (537)
T ss_dssp ------C-CCCCH----HHHHHHHHTSCHHHHHHTSCCCCSSCSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHH
T ss_pred -----cc-ccchH----hHHHHHHHhcChHHHHHHHhhccccccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 00 11221 2223344455556666666555543332 233333222222 355666666666
Q ss_pred hHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccH
Q 047767 304 MQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECC 383 (666)
Q Consensus 304 m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 383 (666)
+.+. .|+ +..++..+.. ++
T Consensus 228 ~l~~--~p~-----------------------------------~~~~~~~~~~------------------------~~ 246 (537)
T 3fp2_A 228 LLSA--NTV-----------------------------------DDPLRENAAL------------------------AL 246 (537)
T ss_dssp HHC----CC-----------------------------------CHHHHHHHHH------------------------HH
T ss_pred HHHH--CCC-----------------------------------cchhhHHHHH------------------------HH
Confidence 5542 122 2221111111 12
Q ss_pred HHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHH
Q 047767 384 NSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYS 463 (666)
Q Consensus 384 ~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 463 (666)
..+...+...|++++|...|++..+. .|+...+..+-.. +...++++.|...+..+.+.. +.+..++..+...+.
T Consensus 247 ~~~g~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 321 (537)
T 3fp2_A 247 CYTGIFHFLKNNLLDAQVLLQESINL--HPTPNSYIFLALT--LADKENSQEFFKFFQKAVDLN-PEYPPTYYHRGQMYF 321 (537)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHHHH--TCCSSCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHhcccHHHHHHHHHHHHhc--CCCchHHHHHHHH--HHHhcCHHHHHHHHHHHhccC-CCCHHHHHHHHHHHH
Confidence 33445566667777777777777664 3444445444444 667777777777777776654 345667888889999
Q ss_pred hhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHH
Q 047767 464 RCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540 (666)
Q Consensus 464 ~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 540 (666)
..|++++|...|++..+ .+...|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.+.
T Consensus 322 ~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~ 400 (537)
T 3fp2_A 322 ILQDYKNAKEDFQKAQSLNPENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQ 400 (537)
T ss_dssp HTTCHHHHHHHHHHHHHHCTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHH
Confidence 99999999999998763 456789999999999999999999999999853 23445888889999999999999999
Q ss_pred HHHhHHhhCCCCC----chHHHHHHHHHHhc----------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHH
Q 047767 541 FNSMKSVYGIDAD----RQHYSCMIDMLGRA----------GILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEII 604 (666)
Q Consensus 541 ~~~~~~~~~~~p~----~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~ 604 (666)
++++.+...-.++ ...+..+..+|.+. |++++|+..++++. ..| +...+..+...+...|++++
T Consensus 401 ~~~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~~~g~~~~ 480 (537)
T 3fp2_A 401 YDIAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELDPRSEQAKIGLAQLKLQMEKIDE 480 (537)
T ss_dssp HHHHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccHHH
Confidence 9998865211122 23355566778888 99999999999865 334 67889999999999999999
Q ss_pred HHHHHHHHHhcCCCCcchHH
Q 047767 605 GRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 605 a~~~~~~~~~~~p~~~~~~~ 624 (666)
|.+.++++++..|.++....
T Consensus 481 A~~~~~~al~~~~~~~~~~~ 500 (537)
T 3fp2_A 481 AIELFEDSAILARTMDEKLQ 500 (537)
T ss_dssp HHHHHHHHHHHC--CHHHHH
T ss_pred HHHHHHHHHHhCCCcHHHHH
Confidence 99999999999998876654
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.88 E-value=6.8e-20 Score=187.78 Aligned_cols=146 Identities=10% Similarity=0.086 Sum_probs=104.4
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHcCCCCC-----HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHH
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQRGLIPD-----KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMID 562 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~g~~p~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~ 562 (666)
+...+...|++++|...|+++.+ +.|+ ...+..+...+.+.|++++|...++++.+. .| +...|..++.
T Consensus 263 ~~~~~~~~g~~~~A~~~~~~~l~--~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~l~~ 337 (450)
T 2y4t_A 263 SAEELIRDGRYTDATSKYESVMK--TEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQM---EPDNVNALKDRAE 337 (450)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHH--HCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--cCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh---CcccHHHHHHHHH
Confidence 47778888889999999888887 4555 336777788888889999999999888765 34 4788888888
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH------------HHhhC-----ChHHHHHHHHH-HHhcCCCCcc-
Q 047767 563 MLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRS------------CRVHG-----NEIIGRRVANI-LMELEPVDFA- 621 (666)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~------------~~~~~-----~~~~a~~~~~~-~~~~~p~~~~- 621 (666)
+|...|++++|...++++. ..| +...+..+..+ |...| +.+++.+.+++ +++..|++..
T Consensus 338 ~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~~~pd~~~~ 417 (450)
T 2y4t_A 338 AYLIEEMYDEAIQDYETAQEHNENDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQWHPDNFQN 417 (450)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHHSCGGGCCS
T ss_pred HHHHhcCHHHHHHHHHHHHHhCcchHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHHhCCCCCCC
Confidence 8999999999998888764 445 45566555533 33333 56778888886 7777776432
Q ss_pred ---------hHHHHHHHHhhcCCchHH
Q 047767 622 ---------VYSQVSNFYSEIGEFEVS 639 (666)
Q Consensus 622 ---------~~~~l~~~~~~~g~~~~A 639 (666)
.+..++.+|...|+.+++
T Consensus 418 ~~~~~~a~~~~~~i~~ay~~L~d~~~r 444 (450)
T 2y4t_A 418 EEEKKKAEKKFIDIAAAKEVLSDPEMR 444 (450)
T ss_dssp HHHHHHHHHHHHHHHHHHHHSSGGGGC
T ss_pred chHHHHHHHHHHHHHHHHHHhCCHHHH
Confidence 344556666666555443
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.82 E-value=2.1e-17 Score=163.49 Aligned_cols=172 Identities=8% Similarity=-0.006 Sum_probs=83.9
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHH-------
Q 047767 454 VSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFL------- 522 (666)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~------- 522 (666)
.+..+...+...|++++|...+++..+ .+...+..+...+...|++++|...+++..+. .|+.. .+.
T Consensus 156 ~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~ 233 (359)
T 3ieg_A 156 LRELRAECFIKEGEPRKAISDLKAASKLKSDNTEAFYKISTLYYQLGDHELSLSEVRECLKL--DQDHKRCFAHYKQVKK 233 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTTCSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh--CccchHHHHHHHHHHH
Confidence 334444455555555555555554432 34455555555555555555555555555552 23221 111
Q ss_pred -----HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCc-----hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHH
Q 047767 523 -----CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-----QHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWS 590 (666)
Q Consensus 523 -----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-----~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~ 590 (666)
.+...+.+.|++++|...++++.+. .|+. ..+..+..+|...|++++|++.+++.. ..| +...|.
T Consensus 234 ~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~ 310 (359)
T 3ieg_A 234 LNKLIESAEELIRDGRYTDATSKYESVMKT---EPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALK 310 (359)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhc---CCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHH
Confidence 1133344555555555555555543 2221 123334455555555555555555433 122 444555
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 630 (666)
.++..+...|++++|.+.++++++.+|+++.++..|..++
T Consensus 311 ~~~~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~ 350 (359)
T 3ieg_A 311 DRAEAYLIEEMYDEAIQDYEAAQEHNENDQQIREGLEKAQ 350 (359)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhcCCCChHHHHHHHHHH
Confidence 5555555555555555555555555555555555444444
No 14
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=4.9e-15 Score=159.50 Aligned_cols=500 Identities=12% Similarity=0.089 Sum_probs=347.4
Q ss_pred hHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhH
Q 047767 77 TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYM 156 (666)
Q Consensus 77 ~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~ 156 (666)
.-+.|+...-+.++..-...+++.-...|. .++.++|+|.+.|...++-.+.. + .-|.+--..++.-||
T Consensus 841 ~~~~lv~~~ekrnrLkll~p~LE~~~~~g~-~~~~~hnalakiyid~n~npe~f------L----~~n~~yd~~~vgkyc 909 (1630)
T 1xi4_A 841 STDELVAEVEKRNRLKLLLPWLEARIHEGC-EEPATHNALAKIYIDSNNNPERF------L----RENPYYDSRVVGKYC 909 (1630)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCHHHHHHHHHHHhccCCCHHHH------h----hccCcccHHHHHHHH
Confidence 345555555666666666677777777774 58888999999888765433211 1 122222233344455
Q ss_pred hcCChhHHHHhhccCC------------------------CCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcC--CCCC
Q 047767 157 RMGPSVRALDLFDELP------------------------ERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEG--VEPN 210 (666)
Q Consensus 157 ~~g~~~~a~~~~~~~~------------------------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~--~~p~ 210 (666)
...|..-|.-.|++-. +.|...|..++.- +-+-=.++.+...... -.-|
T Consensus 910 e~rDp~la~iay~~g~~d~eli~vt~~n~l~k~~arylv~r~d~~lW~~vl~~-----~n~~RR~Lidqv~a~aL~e~~~ 984 (1630)
T 1xi4_A 910 EKRDPHLACVAYERGQCDLELINVCNENSLFKSLSRYLVRRKDPELWGSVLLE-----SNPYRRPLIDQVVQTALSETQD 984 (1630)
T ss_pred HhcCcchHHHHhcccCCcHHHHHHHhcchhHHHHHHHHHHhcCHHHHHHHhcC-----CcHHHHHHHHHHHHhhcccccC
Confidence 5555544444444311 1233333333310 0011112222211111 1123
Q ss_pred HhhHHHHHHHhcccCChHHHHHHHHHHHHhCC-CCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHH
Q 047767 211 GLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGW-VDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYA 289 (666)
Q Consensus 211 ~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~ 289 (666)
+.-.....+++...|...++.++++++.-.+. +..+....+.++.+..+. +..+..+.......-+ ...+...+.
T Consensus 985 PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~d---~~eIA~Iai 1060 (1630)
T 1xi4_A 985 PEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNYD---APDIANIAI 1060 (1630)
T ss_pred HHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhcc---HHHHHHHHH
Confidence 33445577888899999999999999985431 234566777788777777 5566666665554323 445777888
Q ss_pred cCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHh-ccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH
Q 047767 290 DYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFAS-RTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS 368 (666)
Q Consensus 290 ~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 368 (666)
..|.+++|..+|++.. .+...+..+. ..+++++|.++.+.+ .++.+|..+..++...|++++|
T Consensus 1061 ~lglyEEAf~IYkKa~---------~~~~A~~VLie~i~nldrAiE~Aerv-------n~p~vWsqLAKAql~~G~~kEA 1124 (1630)
T 1xi4_A 1061 SNELFEEAFAIFRKFD---------VNTSAVQVLIEHIGNLDRAYEFAERC-------NEPAVWSQLAKAQLQKGMVKEA 1124 (1630)
T ss_pred hCCCHHHHHHHHHHcC---------CHHHHHHHHHHHHhhHHHHHHHHHhc-------CCHHHHHHHHHHHHhCCCHHHH
Confidence 9999999999999962 1122222222 677788888877744 2788999999999999999999
Q ss_pred HHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCC
Q 047767 369 VAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGF 448 (666)
Q Consensus 369 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~ 448 (666)
...|.+. .|...|..++.++.+.|++++|++.|...++..-.|...+ .+..+ +++.++++....+. .
T Consensus 1125 IdsYiKA--dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~~e~~Idt--~Lafa--YAKl~rleele~fI----~--- 1191 (1630)
T 1xi4_A 1125 IDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARESYVET--ELIFA--LAKTNRLAELEEFI----N--- 1191 (1630)
T ss_pred HHHHHhc--CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhcccccccH--HHHHH--HHhhcCHHHHHHHH----h---
Confidence 9999775 5677788899999999999999999998777542222333 34444 66667777544332 1
Q ss_pred CCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047767 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528 (666)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 528 (666)
.++...+..+...|...|++++|..+|... ..|..+..++++.|++++|.+.+++. -+..+|..+..+|
T Consensus 1192 ~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA-----~ny~rLA~tLvkLge~q~AIEaarKA------~n~~aWkev~~ac 1260 (1630)
T 1xi4_A 1192 GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV-----SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFAC 1260 (1630)
T ss_pred CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh-----hHHHHHHHHHHHhCCHHHHHHHHHHh------CCHHHHHHHHHHH
Confidence 345566777999999999999999999985 58999999999999999999999876 3457899999999
Q ss_pred cCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHh--hCChHH
Q 047767 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRV--HGNEII 604 (666)
Q Consensus 529 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~--~~~~~~ 604 (666)
...|++..|....-. +..++..+..++..|.+.|.+++|+.+++... ..+ ....|..+...+.+ -++..+
T Consensus 1261 ve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~LeraH~gmftELaiLyaKy~peklmE 1334 (1630)
T 1xi4_A 1261 VDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGLERAHMGMFTELAILYSKFKPQKMRE 1334 (1630)
T ss_pred hhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccChhHhHHHHHHHHHHHhCCHHHHHH
Confidence 999999999887653 33456778899999999999999999998765 333 45577666666655 457777
Q ss_pred HHHHHHHHHhcCC-----CCcchHHHHHHHHhhcCCchHHHHH
Q 047767 605 GRRVANILMELEP-----VDFAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 605 a~~~~~~~~~~~p-----~~~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
+.+.|..-....| .++..|..++.+|.+.|+++.|...
T Consensus 1335 hlk~f~~rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~t 1377 (1630)
T 1xi4_A 1335 HLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIIT 1377 (1630)
T ss_pred HHHHHHHhcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHH
Confidence 8888887777666 6788999999999999999999943
No 15
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=7e-15 Score=158.35 Aligned_cols=541 Identities=10% Similarity=0.052 Sum_probs=352.4
Q ss_pred CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCC-CC-----CchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcc
Q 047767 38 PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMP-AR-----DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAS 111 (666)
Q Consensus 38 ~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-----~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 111 (666)
....|+.. ...+.+|...|.+.+|+++++++. +| +....|.++.+-.+. +..+..++.++.... +
T Consensus 981 e~~~PeeV--s~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd~~----d-- 1051 (1630)
T 1xi4_A 981 ETQDPEEV--SVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLDNY----D-- 1051 (1630)
T ss_pred cccCHHHh--HHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhhhc----c--
Confidence 44445555 557888889999999999999886 22 235566677776666 556666666665421 1
Q ss_pred cHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCC
Q 047767 112 TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSR 191 (666)
Q Consensus 112 ~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~ 191 (666)
...+...+...|.+++|..+|++.. ......+.+ +-..|++++|.++.++... ..+|..+..++...|+
T Consensus 1052 -~~eIA~Iai~lglyEEAf~IYkKa~-----~~~~A~~VL---ie~i~nldrAiE~Aervn~--p~vWsqLAKAql~~G~ 1120 (1630)
T 1xi4_A 1052 -APDIANIAISNELFEEAFAIFRKFD-----VNTSAVQVL---IEHIGNLDRAYEFAERCNE--PAVWSQLAKAQLQKGM 1120 (1630)
T ss_pred -HHHHHHHHHhCCCHHHHHHHHHHcC-----CHHHHHHHH---HHHHhhHHHHHHHHHhcCC--HHHHHHHHHHHHhCCC
Confidence 3447777888899999999988752 111112222 2267888998888887744 4567888888999999
Q ss_pred chHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhc
Q 047767 192 PDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFD 271 (666)
Q Consensus 192 ~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 271 (666)
+++|++.|.+. -|...|..++.++.+.|+++++.+.+....+.. ++..+.+.++.+|++.+++++.....
T Consensus 1121 ~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~---~e~~Idt~LafaYAKl~rleele~fI- 1190 (1630)
T 1xi4_A 1121 VKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA---RESYVETELIFALAKTNRLAELEEFI- 1190 (1630)
T ss_pred HHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc---ccccccHHHHHHHHhhcCHHHHHHHH-
Confidence 99999888553 467788888888999999999999998877764 33333445888888888888655554
Q ss_pred cCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhH
Q 047767 272 FIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351 (666)
Q Consensus 272 ~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 351 (666)
..++...|..+...|...|++++|..+|... ..|..+..++.+.|+++.|.+.++... +..+
T Consensus 1191 --~~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIEaarKA~-------n~~a 1252 (1630)
T 1xi4_A 1191 --NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKAN-------STRT 1252 (1630)
T ss_pred --hCCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHHHHHHhC-------CHHH
Confidence 3445666777888888999999999999885 378888889999999888888887762 6788
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhccc
Q 047767 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431 (666)
Q Consensus 352 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 431 (666)
|..+..+|...|++..|...... ...++..+..++..|.+.|.+++|+.+++...... +.....|+-+-..++....+
T Consensus 1253 Wkev~~acve~~Ef~LA~~cgl~-Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmftELaiLyaKy~pe 1330 (1630)
T 1xi4_A 1253 WKEVCFACVDGKEFRLAQMCGLH-IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKFKPQ 1330 (1630)
T ss_pred HHHHHHHHhhhhHHHHHHHHHHh-hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHHHHHHHHHhCCHH
Confidence 88888888888888888887664 22355566788888999999999999997766432 22223333333332255555
Q ss_pred chhhHHHHHHHHHHhCCCC------chHHHHHHHHHHHhhCCHHHHHHHhccC-------------C--CCCHHHHHHHH
Q 047767 432 NLGSCRLLHCCAIKSGFES------NIAVSCSLMDAYSRCGHIELSHQVFEKI-------------P--SPNVVCFTSIM 490 (666)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~-------------~--~~~~~~~~~li 490 (666)
+..++.+.|.. +.++++ +...|..++..|.+.|+++.|....-+- . ..|+..|...+
T Consensus 1331 klmEhlk~f~~--rini~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~tm~~h~~~a~~~~~Fk~~i~kv~n~elyykai 1408 (1630)
T 1xi4_A 1331 KMREHLELFWS--RVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITMMNHPTDAWKEGQFKDIITKVANVELYYRAI 1408 (1630)
T ss_pred HHHHHHHHHHH--hcccchHhHHHHHHHHHHHHHHHHHhcccHHHHHHHHHhccHhhhhhHHHHHHhcccccHHHHHHHH
Confidence 55555555442 233333 5677889999999999999888333222 1 14666666666
Q ss_pred HHHHHcC---------------ChhHHHHHHHHHHHcCCCCCHHHH-------------HHHHHHhcCCCcHHHHHHHHH
Q 047767 491 NGYSRNG---------------MGREALDMLEVMIQRGLIPDKVTF-------------LCVLAGCNHSGMVKEGQLVFN 542 (666)
Q Consensus 491 ~~~~~~~---------------~~~~a~~~~~~m~~~g~~p~~~~~-------------~~l~~~~~~~g~~~~a~~~~~ 542 (666)
.-|...+ +++++.++|.. .|.-|-...| ..+...+....+++.-+...+
T Consensus 1409 ~Fyl~~~P~~lndLl~~l~~rlD~~R~V~l~~~---~~~l~lik~yl~~vq~~n~~~Vneal~el~ieeed~~~Lr~si~ 1485 (1630)
T 1xi4_A 1409 QFYLEFKPLLLNDLLMVLSPRLDHTRAVNYFSK---VKQLPLVKPYLRSVQNHNNKSVNESLNNLFITEEDYQALRTSID 1485 (1630)
T ss_pred HHHHhhChHHHHHHHHHhhhcCChHHHHHHHHH---cCChHHhHHHHHHHHHhcchhhhHHHHHHhcCccchHHHHHHHh
Confidence 6666555 66666666642 1111211111 222233333333322111111
Q ss_pred HhHH------hhCCC-CCchHHHHHHH-HHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 543 SMKS------VYGID-ADRQHYSCMID-MLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 543 ~~~~------~~~~~-p~~~~~~~l~~-~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
.--. ...++ -+..-+..+.. .|-+.|+|++|.+++.+-. .|.-.+.+..+.|+.+.+.+++.-..+
T Consensus 1486 ~~~nfd~~~La~~lekheLl~frrIAa~ly~~n~~~~~ai~l~k~d~------l~~dAm~~a~~S~d~e~~e~ll~~F~~ 1559 (1630)
T 1xi4_A 1486 AYDNFDNISLAQRLEKHELIEFRRIAAYLFKGNNRWKQSVELCKKDS------LYKDAMQYASESKDTELAEELLQWFLQ 1559 (1630)
T ss_pred hccCcCHHHHHHHhhhhhHHHHHHHHHHHHHhcCcHHHHHHHHHhcc------CHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 1000 00000 01111233333 4455599999999987655 244556677788888888888777766
Q ss_pred cCCCCcchHHHHHHHHhhcCCchHHHH
Q 047767 615 LEPVDFAVYSQVSNFYSEIGEFEVSMQ 641 (666)
Q Consensus 615 ~~p~~~~~~~~l~~~~~~~g~~~~A~~ 641 (666)
. .+..+|......|+..=+.+-+++
T Consensus 1560 ~--~~~E~f~a~Ly~cy~l~~pd~vle 1584 (1630)
T 1xi4_A 1560 E--EKRECFGACLFTCYDLLRPDVVLE 1584 (1630)
T ss_pred c--CChhHHHHHHHHHhccCCchHHHH
Confidence 6 445666666666666555555554
No 16
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.80 E-value=4.1e-17 Score=161.48 Aligned_cols=311 Identities=13% Similarity=0.051 Sum_probs=226.1
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 047767 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356 (666)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 356 (666)
|+..+..+...+...|++++|...|+++.+.. +.+...+..+...+...|+++.|...++.+.+....
T Consensus 2 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~----------- 69 (359)
T 3ieg_A 2 DVEKHLELGKKLLAAGQLADALSQFHAAVDGD-PDNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD----------- 69 (359)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-----------
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-----------
Confidence 34566677777888888888888888876642 123344444455555555555555555555443211
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCC---CHHHHHHHhchhhhhcccch
Q 047767 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGL---DEVTLSTTLKALSVSASANL 433 (666)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p---~~~~~~~ll~~~~~~~~~~~ 433 (666)
+...+..+...+...|++++|...|++..+. .| +.......+.. .
T Consensus 70 ----------------------~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~~~l~~--------~ 117 (359)
T 3ieg_A 70 ----------------------FTAARLQRGHLLLKQGKLDEAEDDFKKVLKS--NPSEQEEKEAESQLVK--------A 117 (359)
T ss_dssp ----------------------CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHH--------H
T ss_pred ----------------------cchHHHHHHHHHHHcCChHHHHHHHHHHHhc--CCcccChHHHHHHHHH--------H
Confidence 3345666677777778888888888877654 34 22221111110 0
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 047767 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMI 510 (666)
Q Consensus 434 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 510 (666)
. ....+..+...+...|++++|.+.++++.+ .+...+..+...+...|++++|...++++.
T Consensus 118 ~----------------~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 181 (359)
T 3ieg_A 118 D----------------EMQRLRSQALDAFDGADYTAAITFLDKILEVCVWDAELRELRAECFIKEGEPRKAISDLKAAS 181 (359)
T ss_dssp H----------------HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred H----------------HHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 0 011223345678899999999999998763 567889999999999999999999999999
Q ss_pred HcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHH------------HHHHHHHhcCChHHHHHHH
Q 047767 511 QRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYS------------CMIDMLGRAGILDKAEELL 577 (666)
Q Consensus 511 ~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~------------~l~~~~~~~g~~~~A~~~~ 577 (666)
+.. +.+...+..+...+...|++++|...++++.+. .|+ ...+. .++..+.+.|++++|.+.+
T Consensus 182 ~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~ 257 (359)
T 3ieg_A 182 KLK-SDNTEAFYKISTLYYQLGDHELSLSEVRECLKL---DQDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKY 257 (359)
T ss_dssp TTC-SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 842 335568889999999999999999999999875 455 33332 3367799999999999999
Q ss_pred HhCC-CCCC-H----HHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 578 QQTP-GGGD-C----MMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 578 ~~~~-~~~~-~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+++. ..|+ . ..+..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|.+.++++.+...
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~p 337 (359)
T 3ieg_A 258 ESVMKTEPSVAEYTVRSKERICHCFSKDEKPVEAIRICSEVLQMEPDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHNE 337 (359)
T ss_dssp HHHHHHCCSSHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCT
T ss_pred HHHHhcCCCchHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 8765 3343 3 23556778899999999999999999999999999999999999999999999999999987543
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.79 E-value=5.8e-16 Score=161.58 Aligned_cols=411 Identities=7% Similarity=0.032 Sum_probs=257.9
Q ss_pred CHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCC--CChhhHHHHHHH
Q 047767 210 NGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPV--DDVISWNSIVSI 287 (666)
Q Consensus 210 ~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~--~~~~~~~~li~~ 287 (666)
|...|..++.. ...|+++.|..+++.+++. .|.+...|..++..+.+.|++++|..+|++... |++..|...+..
T Consensus 12 ~~~~w~~l~~~-~~~~~~~~a~~~~e~al~~--~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~p~~~lw~~~~~~ 88 (530)
T 2ooe_A 12 DLDAWSILIRE-AQNQPIDKARKTYERLVAQ--FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKVLHIDLWKCYLSY 88 (530)
T ss_dssp CHHHHHHHHHH-HHSSCHHHHHHHHHHHHTT--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTCCCHHHHHHHHHH
T ss_pred CHHHHHHHHHH-HHhCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcCCChHHHHHHHHH
Confidence 45566666663 5567777777777777776 366666777777777777777777777766542 455555554432
Q ss_pred -HHcCCChHHHHH----HHHHhHh-cCCCCC-hhhHHHHHHHHhc---------cCChhhHHHHHHHHHHhCCCCCchhH
Q 047767 288 -YADYDLIFDALE----LFFRMQL-CRKRPS-IRSFVEFLNFASR---------TGNVYFGKQIHGYVTKLGFDHGSVHV 351 (666)
Q Consensus 288 -~~~~g~~~~a~~----~~~~m~~-~~~~p~-~~t~~~ll~~~~~---------~~~~~~a~~~~~~~~~~~~~~~~~~~ 351 (666)
....|+.++|.+ +|+.... .|..|+ ...|...+....+ .|+++.|..+++.+.+..... ...+
T Consensus 89 ~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~-~~~~ 167 (530)
T 2ooe_A 89 VRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMIN-IEQL 167 (530)
T ss_dssp HHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTT-HHHH
T ss_pred HHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhh-HHHH
Confidence 223455555443 4444433 243332 2233333333222 455555555555555411000 1112
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHH------HcC---CCCCH-------
Q 047767 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMV------DEG---IGLDE------- 415 (666)
Q Consensus 352 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~------~~~---~~p~~------- 415 (666)
+..........|. ..+.. ++. .+.+++..|..+++.+. +.. +.|+.
T Consensus 168 ~~~~~~~e~~~~~-~~~~~---------------~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~ 229 (530)
T 2ooe_A 168 WRDYNKYEEGINI-HLAKK---------------MIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQ 229 (530)
T ss_dssp HHHHHHHHHHHCH-HHHHH---------------HHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHH
T ss_pred HHHHHHHHHhhch-hHHHH---------------HHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHH
Confidence 2211111000000 00000 000 12345566666665532 111 23331
Q ss_pred -HHHHHHhchhhhhc----ccch----hhHHHHHHHHHHhCCCCchHHHHHHHHHHHh-------hCCHH-------HHH
Q 047767 416 -VTLSTTLKALSVSA----SANL----GSCRLLHCCAIKSGFESNIAVSCSLMDAYSR-------CGHIE-------LSH 472 (666)
Q Consensus 416 -~~~~~ll~~~~~~~----~~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~g~~~-------~A~ 472 (666)
..|...+.. ... .++. ..+..+++.+.... +.+...|..+...+.+ .|+++ +|.
T Consensus 230 ~~~w~~~~~~--e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~ 306 (530)
T 2ooe_A 230 VDMWKKYIQW--EKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAA 306 (530)
T ss_dssp HHHHHHHHHH--HHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--HHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHH
Confidence 233333322 111 1122 25556777776652 4567777777777775 68887 899
Q ss_pred HHhccCCC---C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH--HHHHHHHHHhcCCCcHHHHHHHHHHhHH
Q 047767 473 QVFEKIPS---P-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK--VTFLCVLAGCNHSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 473 ~~~~~~~~---~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~--~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 546 (666)
.+|++..+ | +...|..++..+.+.|++++|..+|+++.+ +.|+. ..|..++..+.+.|++++|.++|++..+
T Consensus 307 ~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~ 384 (530)
T 2ooe_A 307 NIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARE 384 (530)
T ss_dssp HHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--SSSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhC--ccccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 99997763 4 578899999999999999999999999998 56753 4788888888889999999999999985
Q ss_pred hhCCCCC-chHHHHHHHH-HHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcc-
Q 047767 547 VYGIDAD-RQHYSCMIDM-LGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA- 621 (666)
Q Consensus 547 ~~~~~p~-~~~~~~l~~~-~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~- 621 (666)
. .|+ ...|...+.. +...|++++|.++|+... ..| +...|..++..+.+.|+.++|..+|+++++..|.++.
T Consensus 385 ~---~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~ 461 (530)
T 2ooe_A 385 D---ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEK 461 (530)
T ss_dssp C---TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGG
T ss_pred c---cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHCCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHH
Confidence 4 444 3444333322 346899999999999754 344 6789999999999999999999999999998877665
Q ss_pred ---hHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 622 ---VYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 622 ---~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.|...+......|+.+.+..+++++.+.-
T Consensus 462 ~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~ 493 (530)
T 2ooe_A 462 SGEIWARFLAFESNIGDLASILKVEKRRFTAF 493 (530)
T ss_dssp CHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC
Confidence 78888888889999999999999887644
No 18
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.79 E-value=5e-17 Score=158.77 Aligned_cols=287 Identities=9% Similarity=-0.076 Sum_probs=193.8
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHH
Q 047767 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALT 356 (666)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 356 (666)
++..+..+...+...|++++|..+++++.... +.+...+..+..++...|+++.|...++.+.+.... +
T Consensus 21 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~--~-------- 89 (330)
T 3hym_B 21 NLDVVVSLAERHYYNCDFKMCYKLTSVVMEKD-PFHASCLPVHIGTLVELNKANELFYLSHKLVDLYPS--N-------- 89 (330)
T ss_dssp CCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT--S--------
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCcC--C--------
Confidence 45556666666667777777777777765542 122233334444445555555555555555443221 2
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcC-ChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhh
Q 047767 357 DMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSG-NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGS 435 (666)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~-~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~ 435 (666)
...|..+...+...| ++++|...|++..+..
T Consensus 90 -----------------------~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~------------------------- 121 (330)
T 3hym_B 90 -----------------------PVSWFAVGCYYLMVGHKNEHARRYLSKATTLE------------------------- 121 (330)
T ss_dssp -----------------------THHHHHHHHHHHHSCSCHHHHHHHHHHHHTTC-------------------------
T ss_pred -----------------------HHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-------------------------
Confidence 223344444444444 4555555555544321
Q ss_pred HHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 047767 436 CRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQR 512 (666)
Q Consensus 436 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 512 (666)
+.+...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|...+++..+.
T Consensus 122 -------------~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~ 188 (330)
T 3hym_B 122 -------------KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI 188 (330)
T ss_dssp -------------TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred -------------CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 11233444555666677777777777766552 33556677888888899999999999988873
Q ss_pred CCCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhC-------CCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--C
Q 047767 513 GLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG-------IDADRQHYSCMIDMLGRAGILDKAEELLQQTP--G 582 (666)
Q Consensus 513 g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-------~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~ 582 (666)
.| +...+..+...+...|++++|...++++.+... .+.....+..++.+|...|++++|++.++++. .
T Consensus 189 --~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~ 266 (330)
T 3hym_B 189 --APEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLI 266 (330)
T ss_dssp --CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS
T ss_pred --CCCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhC
Confidence 44 455788888888899999999999988876521 13336788999999999999999999998765 2
Q ss_pred CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH-hhcCCch
Q 047767 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY-SEIGEFE 637 (666)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~ 637 (666)
+.+...|..+...+...|++++|.+.++++++.+|+++.++..++.++ ...|+.+
T Consensus 267 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~g~~~ 322 (330)
T 3hym_B 267 PQNASTYSAIGYIHSLMGNFENAVDYFHTALGLRRDDTFSVTMLGHCIEMYIGDSE 322 (330)
T ss_dssp TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTTCSCCHHHHHHHHHHHHTTTTC--
T ss_pred ccchHHHHHHHHHHHHhccHHHHHHHHHHHHccCCCchHHHHHHHHHHHHHhCchh
Confidence 336778888999999999999999999999999999999999999988 5566543
No 19
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.78 E-value=2.7e-17 Score=158.72 Aligned_cols=285 Identities=11% Similarity=0.073 Sum_probs=123.1
Q ss_pred cCCChhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHH
Q 047767 56 KSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCR 135 (666)
Q Consensus 56 ~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~ 135 (666)
+.|++++|.+.++++..|+ +|..|..++.+.|++++|++.|.+ .+|..+|..++.++...|++++|...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~~--vWs~La~A~l~~g~~~eAIdsfik------a~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEPA--VWSQLAKAQLQKGMVKEAIDSYIK------ADDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCChH--HHHHHHHHHHHcCCHHHHHHHHHc------CCCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 6778899999999996664 888999999999999999999865 25777899999999999999999997777
Q ss_pred HHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHH
Q 047767 136 VLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFC 215 (666)
Q Consensus 136 ~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~ 215 (666)
.++. .+++.+.+.|+.+|.+.|+++++.++++. |+..+|+.+...|...|.+++|...|..+ ..|.
T Consensus 87 ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~~ 152 (449)
T 1b89_A 87 ARKK--ARESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFG 152 (449)
T ss_dssp ------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCHH
T ss_pred HHHh--CccchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhHH
Confidence 7664 45577888899999999999998888864 77778999999999999999999999876 4688
Q ss_pred HHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChH
Q 047767 216 YMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIF 295 (666)
Q Consensus 216 ~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~ 295 (666)
.+..++.+.|++++|.+.++.+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|.++
T Consensus 153 ~LA~~L~~Lg~yq~AVea~~KA-------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~~e 224 (449)
T 1b89_A 153 RLASTLVHLGEYQAAVDGARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGYFE 224 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHH-------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHhccHHHHHHHHHHc-------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCCHH
Confidence 8899999999999999988876 267888999999999999999988777655 34444556888899999999
Q ss_pred HHHHHHHHhHhcCCCCChhhHHHHHHHHhcc--CChhhHHHHHHHHHHhCCCC-----CchhHHhHHHHHHHhcCChHHH
Q 047767 296 DALELFFRMQLCRKRPSIRSFVEFLNFASRT--GNVYFGKQIHGYVTKLGFDH-----GSVHVQSALTDMYGKCNVIESS 368 (666)
Q Consensus 296 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~--~~~~~a~~~~~~~~~~~~~~-----~~~~~~~~l~~~~~~~~~~~~a 368 (666)
+|..+++...... +-....|+.+--.+++- +++.+..+.|. .+.++++ .....|..++-.|...++++.|
T Consensus 225 Eai~lLe~aL~le-~ah~~~ftel~il~~ky~p~k~~ehl~~~~--~~ini~k~~~~~~~~~~w~e~~~ly~~~~e~d~A 301 (449)
T 1b89_A 225 ELITMLEAALGLE-RAHMGMFTELAILYSKFKPQKMREHLELFW--SRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNA 301 (449)
T ss_dssp HHHHHHHHHTTST-TCCHHHHHHHHHHHHTTCHHHHHHHHHHHS--TTSCHHHHHHHHHTTTCHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHhCCc-HHHHHHHHHHHHHHHhcCHHHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHHHHHHHhhchHHHH
Confidence 9999998876543 33344455554444442 33333333222 1112222 2566777778888888888877
Q ss_pred HHHhc
Q 047767 369 VAVFE 373 (666)
Q Consensus 369 ~~~~~ 373 (666)
....-
T Consensus 302 ~~tm~ 306 (449)
T 1b89_A 302 IITMM 306 (449)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66543
No 20
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.77 E-value=6.3e-17 Score=153.59 Aligned_cols=247 Identities=10% Similarity=0.035 Sum_probs=192.0
Q ss_pred HHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcc
Q 047767 351 VQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS 430 (666)
Q Consensus 351 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~ 430 (666)
....+.++|...|+++.|...++....++..++..+...+...++.++|++.++++...+..|+...+.
T Consensus 36 ~~~~l~r~yi~~g~~~~al~~~~~~~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~----------- 104 (291)
T 3mkr_A 36 RDVFLYRAYLAQRKYGVVLDEIKPSSAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFL----------- 104 (291)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHSCTTSCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHH-----------
T ss_pred HHHHHHHHHHHCCCHHHHHHHhcccCChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHH-----------
Confidence 344567778888888888887766544455567777778888888888888888888776666644433
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 047767 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510 (666)
Q Consensus 431 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 510 (666)
..+...+...|++++|.+.+++ ..+...+..++..+.+.|++++|.+.++++.
T Consensus 105 -------------------------~~la~~~~~~g~~~~Al~~l~~--~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~ 157 (291)
T 3mkr_A 105 -------------------------LMAASIYFYDQNPDAALRTLHQ--GDSLECMAMTVQILLKLDRLDLARKELKKMQ 157 (291)
T ss_dssp -------------------------HHHHHHHHHTTCHHHHHHHHTT--CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred -------------------------HHHHHHHHHCCCHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 2344578899999999999998 5678899999999999999999999999999
Q ss_pred HcCCCCCHHHH---HHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C
Q 047767 511 QRGLIPDKVTF---LCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-D 585 (666)
Q Consensus 511 ~~g~~p~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~ 585 (666)
+. .|+.... ..++..+...|++++|..+|+++.+. .+.+...++.++.++.+.|++++|++.++++. ..| +
T Consensus 158 ~~--~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~--~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~ 233 (291)
T 3mkr_A 158 DQ--DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADK--CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGH 233 (291)
T ss_dssp HH--CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHH--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTC
T ss_pred hh--CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHh--CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCC
Confidence 84 5665322 22334455679999999999999986 34558889999999999999999999999865 445 7
Q ss_pred HHHHHHHHHHHHhhCChHH-HHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHH
Q 047767 586 CMMWSSLLRSCRVHGNEII-GRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643 (666)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~-a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 643 (666)
..++..++..+...|+.++ +.++++++++.+|+++.+.. ...+.+.++++..-|
T Consensus 234 ~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P~~~~~~d----~~~~~~~fd~~~~~~ 288 (291)
T 3mkr_A 234 PETLINLVVLSQHLGKPPEVTNRYLSQLKDAHRSHPFIKE----YRAKENDFDRLVLQY 288 (291)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCTTCHHHHH----HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCCCChHHHH----HHHHHHHHHHHHHHc
Confidence 7889999999999999876 57899999999999986654 344555566655544
No 21
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.77 E-value=1.8e-15 Score=156.17 Aligned_cols=371 Identities=10% Similarity=-0.029 Sum_probs=231.8
Q ss_pred CHhhHHHHHHHhcc----cCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHc----cCChHHHHHHhccCCC-CChhh
Q 047767 210 NGLSFCYMVRGCSI----GMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSA----CGSLIEAKKSFDFIPV-DDVIS 280 (666)
Q Consensus 210 ~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~A~~~~~~~~~-~~~~~ 280 (666)
+...+..+-..+.. .+++++|...++...+.| +...+..|...|.. .++.++|.+.|+.... .++..
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a 113 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG----YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKGLPQA 113 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHH
Confidence 33444444444443 566667777776666554 23344455555555 5566666665554432 24555
Q ss_pred HHHHHHHHHc----CCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhc----cCChhhHHHHHHHHHHhCCCCCchhHH
Q 047767 281 WNSIVSIYAD----YDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASR----TGNVYFGKQIHGYVTKLGFDHGSVHVQ 352 (666)
Q Consensus 281 ~~~li~~~~~----~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 352 (666)
+..|...|.. .+++++|...|++..+.| +...+..+-..+.. .++.+.|...++...+.| +...+
T Consensus 114 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~----~~~a~ 186 (490)
T 2xm6_A 114 QQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG----NVWSC 186 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHH
T ss_pred HHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 6666666665 566777777776665543 23334344444433 445555555555554432 34444
Q ss_pred hHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhh----
Q 047767 353 SALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS---- 428 (666)
Q Consensus 353 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~---- 428 (666)
..+..+|... ....+++++|+..|++..+.| +...+..+-.. +.
T Consensus 187 ~~Lg~~y~~g---------------------------~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~--y~~g~g 234 (490)
T 2xm6_A 187 NQLGYMYSRG---------------------------LGVERNDAISAQWYRKSATSG---DELGQLHLADM--YYFGIG 234 (490)
T ss_dssp HHHHHHHHHT---------------------------SSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH--HHHTSS
T ss_pred HHHHHHHhcC---------------------------CCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHH--HHcCCC
Confidence 4444444440 000445555555555554433 11222222111 11
Q ss_pred cccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----hCCHHHHHHHhccCCC-CCHHHHHHHHHHHHHc-----CC
Q 047767 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR----CGHIELSHQVFEKIPS-PNVVCFTSIMNGYSRN-----GM 498 (666)
Q Consensus 429 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~~-----~~ 498 (666)
..++.+.|...+....+.+ +...+..+...|.. .++.++|...|+...+ .+...+..|...|... ++
T Consensus 235 ~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~~~~g~~~~ 311 (490)
T 2xm6_A 235 VTQDYTQSRVLFSQSAEQG---NSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQGNSDGQYYLAHLYDKGAEGVAKN 311 (490)
T ss_dssp SCCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHCBTTBCCC
T ss_pred CCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHcCCCCCcCC
Confidence 1445555555555544433 23344445555665 7888999988887664 4667777888888887 89
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC---cHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh----cCChH
Q 047767 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG---MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR----AGILD 571 (666)
Q Consensus 499 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~ 571 (666)
+++|+..+++..+.| +...+..+...+...| +.++|.++|++..+. .++..+..|...|.. .++++
T Consensus 312 ~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~g~g~~~~~~ 384 (490)
T 2xm6_A 312 REQAISWYTKSAEQG---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAK----GEKAAQFNLGNALLQGKGVKKDEQ 384 (490)
T ss_dssp HHHHHHHHHHHHHTT---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHTSSSCCCHH
T ss_pred HHHHHHHHHHHHhcC---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHC----CCHHHHHHHHHHHHcCCCCCCCHH
Confidence 999999999998865 3345556666665545 789999999998875 357788889999988 88999
Q ss_pred HHHHHHHhCCCCCCHHHHHHHHHHHHh----hCChHHHHHHHHHHHhcCCC---CcchHHHHHHHHhhc
Q 047767 572 KAEELLQQTPGGGDCMMWSSLLRSCRV----HGNEIIGRRVANILMELEPV---DFAVYSQVSNFYSEI 633 (666)
Q Consensus 572 ~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~ 633 (666)
+|++++++.....+...+..+...|.. .++.++|...|+++.+..|+ ++.+...|+.++...
T Consensus 385 ~A~~~~~~A~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~~~ 453 (490)
T 2xm6_A 385 QAAIWMRKAAEQGLSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTAKQ 453 (490)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCHHH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCHhH
Confidence 999999987756678888888888887 78999999999999998854 777888887776543
No 22
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.76 E-value=1.3e-16 Score=155.81 Aligned_cols=216 Identities=14% Similarity=0.065 Sum_probs=177.9
Q ss_pred hcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhC-CHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHH
Q 047767 428 SASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG-HIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREAL 503 (666)
Q Consensus 428 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 503 (666)
...++.+.|..++..+.+.. +.+...+..+...+...| ++++|...|++..+ .+...|..+...+...|++++|+
T Consensus 67 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 145 (330)
T 3hym_B 67 VELNKANELFYLSHKLVDLY-PSNPVSWFAVGCYYLMVGHKNEHARRYLSKATTLEKTYGPAWIAYGHSFAVESEHDQAM 145 (330)
T ss_dssp HHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHHHHHHHSCSCHHHHHHHHHHHHTTCTTCTHHHHHHHHHHHHHTCHHHHH
T ss_pred HHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHccCHHHHH
Confidence 34444444444444444432 234556667778889999 99999999998763 45778999999999999999999
Q ss_pred HHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 504 DMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 504 ~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
..++++.+. .|+ ...+..+...+...|++++|.+.++++.+. .|+ ...+..++..|...|++++|...++++.
T Consensus 146 ~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~ 220 (330)
T 3hym_B 146 AAYFTAAQL--MKGCHLPMLYIGLEYGLTNNSKLAERFFSQALSI---APEDPFVMHEVGVVAFQNGEWKTAEKWFLDAL 220 (330)
T ss_dssp HHHHHHHHH--TTTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHTT---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHh--ccccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcccHHHHHHHHHHHH
Confidence 999999984 343 456777888999999999999999999854 455 7889999999999999999999998654
Q ss_pred C-----------CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 582 G-----------GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 582 ~-----------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
. +.....|..+...+...|++++|+..++++++..|+++.++..++.+|...|++++|.+.++++.+.
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 299 (330)
T 3hym_B 221 EKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYAEALDYHRQALVLIPQNASTYSAIGYIHSLMGNFENAVDYFHTALGL 299 (330)
T ss_dssp HHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTTT
T ss_pred HHhhhccccccccHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHhhCccchHHHHHHHHHHHHhccHHHHHHHHHHHHcc
Confidence 1 2246789999999999999999999999999999999999999999999999999999999877654
No 23
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.76 E-value=3.7e-15 Score=153.77 Aligned_cols=305 Identities=14% Similarity=0.024 Sum_probs=230.8
Q ss_pred cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHh----cCChHHHHHHhccCCCC-CcccHHHHHHHHHh----cCCh
Q 047767 326 TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGK----CNVIESSVAVFESAPGR-SLECCNSLMTSLLH----SGNI 396 (666)
Q Consensus 326 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~ 396 (666)
.++.+.|...++...+.| ++..+..|..+|.. .++.++|...|+..... ++..+..+...|.. .+++
T Consensus 92 ~~~~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~d~ 167 (490)
T 2xm6_A 92 PQDYAQAVIWYKKAALKG----LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQGRDSGQQSMGDAYFEGDGVTRDY 167 (490)
T ss_dssp CCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCH
T ss_pred CCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCH
Confidence 444444444444444432 44455555555555 55666666666554332 44455666666666 6788
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhc----ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----hCCH
Q 047767 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA----SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR----CGHI 468 (666)
Q Consensus 397 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~ 468 (666)
++|+..|++..+.| +...+..+-.. +.. .++.+.|...+....+.+ +...+..+...|.. .+++
T Consensus 168 ~~A~~~~~~a~~~~---~~~a~~~Lg~~--y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~ 239 (490)
T 2xm6_A 168 VMAREWYSKAAEQG---NVWSCNQLGYM--YSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDY 239 (490)
T ss_dssp HHHHHHHHHHHHTT---CHHHHHHHHHH--HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCH
T ss_pred HHHHHHHHHHHHCC---CHHHHHHHHHH--HhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCH
Confidence 89999998888765 33444433333 333 789999999999888865 45667777777776 7899
Q ss_pred HHHHHHhccCCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC-----CcHHHHH
Q 047767 469 ELSHQVFEKIPS-PNVVCFTSIMNGYSR----NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS-----GMVKEGQ 538 (666)
Q Consensus 469 ~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~-----g~~~~a~ 538 (666)
++|...|+...+ .+...+..+...|.. .+++++|+..|++..+.| +...+..+...+... +++++|.
T Consensus 240 ~~A~~~~~~a~~~~~~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~~~~g~~~~~~~A~ 316 (490)
T 2xm6_A 240 TQSRVLFSQSAEQGNSIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG---NSDGQYYLAHLYDKGAEGVAKNREQAI 316 (490)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT---CHHHHHHHHHHHHHCBTTBCCCHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHcCCCCCcCCHHHHH
Confidence 999999998764 567778888888888 899999999999998765 344556666666665 8999999
Q ss_pred HHHHHhHHhhCCCCCchHHHHHHHHHHhcC---ChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCChHHHHHHHHH
Q 047767 539 LVFNSMKSVYGIDADRQHYSCMIDMLGRAG---ILDKAEELLQQTPGGGDCMMWSSLLRSCRV----HGNEIIGRRVANI 611 (666)
Q Consensus 539 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~ 611 (666)
..+++..+. + +...+..|...|...| ++++|++++++.....+...+..+...|.. .+++++|++.+++
T Consensus 317 ~~~~~a~~~-~---~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~ 392 (490)
T 2xm6_A 317 SWYTKSAEQ-G---DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKGEKAAQFNLGNALLQGKGVKKDEQQAAIWMRK 392 (490)
T ss_dssp HHHHHHHHT-T---CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHH
T ss_pred HHHHHHHhc-C---CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 999999875 3 4567888899998877 789999999987766788899999999988 8999999999999
Q ss_pred HHhcCCCCcchHHHHHHHHhh----cCCchHHHHHHHHHHhCCC
Q 047767 612 LMELEPVDFAVYSQVSNFYSE----IGEFEVSMQIRETALARKL 651 (666)
Q Consensus 612 ~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 651 (666)
+.+.. ++.++..|+.+|.. .+++++|..+|++..+.+.
T Consensus 393 A~~~~--~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 393 AAEQG--LSAAQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHTT--CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHhCC--CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 99864 57899999999998 8999999999999988774
No 24
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.75 E-value=1e-16 Score=159.31 Aligned_cols=278 Identities=10% Similarity=-0.009 Sum_probs=215.0
Q ss_pred HhcCChHHHHH-HhccCCCC-------CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhccc
Q 047767 360 GKCNVIESSVA-VFESAPGR-------SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431 (666)
Q Consensus 360 ~~~~~~~~a~~-~~~~~~~~-------~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 431 (666)
...|+++.|.. .+++.... +...+..+...+.+.|++++|+..|+++.+.. +.+...+..+-.. +...|
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~--~~~~g 112 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTT--QAENE 112 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHH--HHHTT
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH--HHHCc
Confidence 34467777776 66644321 24467778888888889999999988888763 2344455555555 77888
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--C-CHHHHHH---------------HHHHH
Q 047767 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--P-NVVCFTS---------------IMNGY 493 (666)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~---------------li~~~ 493 (666)
+++.|...+..+.+.. +.+..++..+...+...|++++|...|+++.+ | +...+.. .+..+
T Consensus 113 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 191 (368)
T 1fch_A 113 QELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEGAGGAGLGPSKRILGSL 191 (368)
T ss_dssp CHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC---------------CTTHHH
T ss_pred CHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHhhhhcccHHHHHHHHH
Confidence 8888888888888765 44677888889999999999999999987653 2 2222211 13333
Q ss_pred HHcCChhHHHHHHHHHHHcCCCCC---HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCC
Q 047767 494 SRNGMGREALDMLEVMIQRGLIPD---KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGI 569 (666)
Q Consensus 494 ~~~~~~~~a~~~~~~m~~~g~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 569 (666)
...|++++|...++++.+. .|+ ..++..+...+...|++++|...++++... .|+ ...+..++.+|...|+
T Consensus 192 ~~~~~~~~A~~~~~~a~~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~g~ 266 (368)
T 1fch_A 192 LSDSLFLEVKELFLAAVRL--DPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSV---RPNDYLLWNKLGATLANGNQ 266 (368)
T ss_dssp HHHHHHHHHHHHHHHHHHH--STTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred hhcccHHHHHHHHHHHHHh--CcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CcCCHHHHHHHHHHHHHcCC
Confidence 4889999999999999984 454 678899999999999999999999999875 454 7889999999999999
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC-----------cchHHHHHHHHhhcCCc
Q 047767 570 LDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD-----------FAVYSQVSNFYSEIGEF 636 (666)
Q Consensus 570 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-----------~~~~~~l~~~~~~~g~~ 636 (666)
+++|++.++++. ..| +...+..+...+...|++++|...++++++..|++ +.+|..++.+|...|++
T Consensus 267 ~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 346 (368)
T 1fch_A 267 SEEAVAAYRRALELQPGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQS 346 (368)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCG
T ss_pred HHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCCh
Confidence 999999999865 334 67899999999999999999999999999999887 78999999999999999
Q ss_pred hHHHHHHHHH
Q 047767 637 EVSMQIRETA 646 (666)
Q Consensus 637 ~~A~~~~~~~ 646 (666)
++|..++++.
T Consensus 347 ~~A~~~~~~~ 356 (368)
T 1fch_A 347 DAYGAADARD 356 (368)
T ss_dssp GGHHHHHTTC
T ss_pred HhHHHhHHHH
Confidence 9999988643
No 25
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.74 E-value=1.6e-16 Score=157.59 Aligned_cols=232 Identities=10% Similarity=0.044 Sum_probs=189.9
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHH
Q 047767 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458 (666)
Q Consensus 379 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 458 (666)
+...+..+...+.+.|++++|+..|+++.+.. | .+...+..+
T Consensus 64 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p------------------------------------~~~~~~~~l 105 (365)
T 4eqf_A 64 DWPGAFEEGLKRLKEGDLPVTILFMEAAILQD--P------------------------------------GDAEAWQFL 105 (365)
T ss_dssp TCTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC--T------------------------------------TCHHHHHHH
T ss_pred chhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--c------------------------------------CCHHHHHHH
Confidence 44568888899999999999999999987642 2 234455667
Q ss_pred HHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-----------HHHHH
Q 047767 459 MDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-----------TFLCV 524 (666)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-----------~~~~l 524 (666)
...|...|++++|...|++..+ .+...|..+..+|...|++++|+..++++.+ ..|+.. .+..+
T Consensus 106 g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~l 183 (365)
T 4eqf_A 106 GITQAENENEQAAIVALQRCLELQPNNLKALMALAVSYTNTSHQQDACEALKNWIK--QNPKYKYLVKNKKGSPGLTRRM 183 (365)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHCC--------------
T ss_pred HHHHHHCCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHccccHHHHHHHHHHHHH--hCccchHHHhhhccchHHHHHH
Confidence 7788899999999999988763 4578899999999999999999999999988 445433 22345
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhhCCh
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-G-GGDCMMWSSLLRSCRVHGNE 602 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~ 602 (666)
...+...|++++|.+.++++.+.....++..++..++..|...|++++|++.++++. . +.+..+|..++..+...|++
T Consensus 184 ~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~ 263 (365)
T 4eqf_A 184 SKSPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVRPEDYSLWNRLGATLANGDRS 263 (365)
T ss_dssp -----CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCH
Confidence 778899999999999999999862222257899999999999999999999999865 3 34788999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 603 IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 603 ~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
++|+..++++++..|+++.++..++.+|...|++++|++.++++.+..
T Consensus 264 ~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 311 (365)
T 4eqf_A 264 EEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQ 311 (365)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999999999987643
No 26
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.72 E-value=6.4e-16 Score=149.19 Aligned_cols=285 Identities=12% Similarity=0.063 Sum_probs=110.6
Q ss_pred ccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHH
Q 047767 259 ACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGY 338 (666)
Q Consensus 259 ~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~ 338 (666)
+.|++++|.++++++..| ..|..++.++.+.|++++|++.|.+. +|..+|..++.++...|+++++...++.
T Consensus 15 ~~~~ld~A~~fae~~~~~--~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~yl~~ 86 (449)
T 1b89_A 15 HIGNLDRAYEFAERCNEP--AVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQM 86 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCCCh--HHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHHHHHH
Confidence 445566666666666433 36666666666666666666666442 4555666666666666666666665555
Q ss_pred HHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHH
Q 047767 339 VTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTL 418 (666)
Q Consensus 339 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~ 418 (666)
..+. .+ ++.+...++.+|.+.|+++++.++++. ++..+|+.+...|...|++++|...|..+ ..|
T Consensus 87 ark~--~~-~~~i~~~Li~~Y~Klg~l~e~e~f~~~---pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a---------~n~ 151 (449)
T 1b89_A 87 ARKK--AR-ESYVETELIFALAKTNRLAELEEFING---PNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNF 151 (449)
T ss_dssp -------------------------CHHHHTTTTTC---C----------------CTTTHHHHHHHT---------TCH
T ss_pred HHHh--Cc-cchhHHHHHHHHHHhCCHHHHHHHHcC---CcHHHHHHHHHHHHHcCCHHHHHHHHHHh---------hhH
Confidence 5542 12 445566666667777776666666643 44456666677777777777777776655 234
Q ss_pred HHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Q 047767 419 STTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498 (666)
Q Consensus 419 ~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 498 (666)
..+..+ ....|+++.|.+.+..+ .++.+|..++.+|...|+++.|......+. .++.....++..|.+.|+
T Consensus 152 ~~LA~~--L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~L~-~~ad~l~~lv~~Yek~G~ 222 (449)
T 1b89_A 152 GRLAST--LVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLHIV-VHADELEELINYYQDRGY 222 (449)
T ss_dssp HHHHHH--HHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTTTT-TCHHHHHHHHHHHHHTTC
T ss_pred HHHHHH--HHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHHHH-hCHhhHHHHHHHHHHCCC
Confidence 444444 55566666665555544 256677777777888888888877666654 344445567888888888
Q ss_pred hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcC--CCcHHHHHHHHHHhHHhhCCCC------CchHHHHHHHHHHhcCC
Q 047767 499 GREALDMLEVMIQRGLIPD-KVTFLCVLAGCNH--SGMVKEGQLVFNSMKSVYGIDA------DRQHYSCMIDMLGRAGI 569 (666)
Q Consensus 499 ~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~--~g~~~~a~~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~ 569 (666)
+++|..+++.... ..+. ...|+-+.-++++ -++..+..+.|.. +-+++| +...|..++-.|...++
T Consensus 223 ~eEai~lLe~aL~--le~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~k~~~~~~~~~~w~e~~~ly~~~~e 297 (449)
T 1b89_A 223 FEELITMLEAALG--LERAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIPKVLRAAEQAHLWAELVFLYDKYEE 297 (449)
T ss_dssp HHHHHHHHHHHTT--STTCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHHHHHHHHHTTTCHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCcHHHHHHHHHHHHHHHHHHHHhhch
Confidence 8888888888765 3332 3355555555544 3344444444432 224444 36778888888888888
Q ss_pred hHHHHHHHHhC
Q 047767 570 LDKAEELLQQT 580 (666)
Q Consensus 570 ~~~A~~~~~~~ 580 (666)
++.|...+-+-
T Consensus 298 ~d~A~~tm~~h 308 (449)
T 1b89_A 298 YDNAIITMMNH 308 (449)
T ss_dssp HHHHHHHHHHS
T ss_pred HHHHHHHHHhC
Confidence 88888765443
No 27
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=6.4e-15 Score=151.69 Aligned_cols=216 Identities=12% Similarity=-0.026 Sum_probs=123.8
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--C-CHHHHHHHHHHHHH-----------
Q 047767 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--P-NVVCFTSIMNGYSR----------- 495 (666)
Q Consensus 430 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~li~~~~~----------- 495 (666)
.++.+.|...++...... +.+..++..+...|...|++++|...|++..+ | +...+..+..+|..
T Consensus 226 ~~~~~~a~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~y~~~~~~~~~~~~~ 304 (472)
T 4g1t_A 226 GEEEGEGEKLVEEALEKA-PGVTDVLRSAAKFYRRKDEPDKAIELLKKALEYIPNNAYLHCQIGCCYRAKVFQVMNLREN 304 (472)
T ss_dssp ----CHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHC---
T ss_pred hhHHHHHHHHHHHHHHhC-ccHHHHHHHHHHHHHHcCchHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 345556666665555443 33455566677777777777777777776652 3 34455555544432
Q ss_pred --------cCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCch----HHHHHHH
Q 047767 496 --------NGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ----HYSCMID 562 (666)
Q Consensus 496 --------~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~ 562 (666)
.+.++.|...+++..+ ..|+. .++..+...+...|++++|.+.|++..+. .|+.. .+..+..
T Consensus 305 ~~~~~~~~~~~~~~A~~~~~~a~~--~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~---~~~~~~~~~~~~~~~~ 379 (472)
T 4g1t_A 305 GMYGKRKLLELIGHAVAHLKKADE--ANDNLFRVCSILASLHALADQYEEAEYYFQKEFSK---ELTPVAKQLLHLRYGN 379 (472)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHH--HCTTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHS---CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhh--cCCchhhhhhhHHHHHHHhccHHHHHHHHHHHHhc---CCCChHHHHHHHHHHH
Confidence 1235667777777776 34443 36777888888889999999998888764 34322 2333333
Q ss_pred H-HHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHH
Q 047767 563 M-LGRAGILDKAEELLQQTP-GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640 (666)
Q Consensus 563 ~-~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 640 (666)
. +...|++++|+..+++.. ..|+...+. +....+.+++++.++.+|+++.+|..||.+|...|++++|+
T Consensus 380 ~~~~~~~~~~~Ai~~y~kal~i~~~~~~~~---------~~~~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~ 450 (472)
T 4g1t_A 380 FQLYQMKCEDKAIHHFIEGVKINQKSREKE---------KMKDKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQAD 450 (472)
T ss_dssp HHHHTSSCHHHHHHHHHHHHHSCCCCHHHH---------HHHHHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC---
T ss_pred HHHHHCCCHHHHHHHHHHHHhcCcccHHHH---------HHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHH
Confidence 2 346788888888887654 455433221 22344567778888899999999999999999999999999
Q ss_pred HHHHHHHhCCCCcCCCceEE
Q 047767 641 QIRETALARKLTRDIGHSLI 660 (666)
Q Consensus 641 ~~~~~~~~~~~~~~~~~~~~ 660 (666)
+.|+++.+.|.....+.+|+
T Consensus 451 ~~y~kALe~~~~~p~a~~~~ 470 (472)
T 4g1t_A 451 EDSERGLESGSLIPSASSWN 470 (472)
T ss_dssp --------------------
T ss_pred HHHHHHHhcCCCCCcHhhcC
Confidence 99999998776655555553
No 28
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.69 E-value=4.7e-16 Score=140.96 Aligned_cols=193 Identities=13% Similarity=0.060 Sum_probs=158.9
Q ss_pred CCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHH
Q 047767 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCV 524 (666)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 524 (666)
+++...+..+...+.+.|++++|...|++..+ .+...|..+..++.+.|++++|+..+++..+ ..|+. ..+..+
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~l 79 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKENPQDPEALYWLARTQLKLGLVNPALENGKTLVA--RTPRYLGGYMVL 79 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCcHHHHHHH
Confidence 55667778888899999999999999998764 4678899999999999999999999999998 55654 578888
Q ss_pred HHHhcCC-----------CcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHH
Q 047767 525 LAGCNHS-----------GMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWS 590 (666)
Q Consensus 525 ~~~~~~~-----------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~ 590 (666)
...+... |++++|+..+++..+. .|+ ...+..+..+|...|++++|++.+++.. . .+...+.
T Consensus 80 g~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~ 155 (217)
T 2pl2_A 80 SEAYVALYRQAEDRERGKGYLEQALSVLKDAERV---NPRYAPLHLQRGLVYALLGERDKAEASLKQALALE-DTPEIRS 155 (217)
T ss_dssp HHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCHHHHH
T ss_pred HHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHh---CcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc-cchHHHH
Confidence 8899999 9999999999999975 566 7889999999999999999999999765 4 7788999
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
.+...+...|++++|+..++++++.+|+++.++..++.++...|++++|++.+++..
T Consensus 156 ~la~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 156 ALAELYLSMGRLDEALAQYAKALEQAPKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999999999999999999998654
No 29
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.69 E-value=8.4e-16 Score=145.83 Aligned_cols=245 Identities=7% Similarity=-0.034 Sum_probs=192.2
Q ss_pred HHHHhcCChHHHHHHhccCCCCCcc----cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccc
Q 047767 357 DMYGKCNVIESSVAVFESAPGRSLE----CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASAN 432 (666)
Q Consensus 357 ~~~~~~~~~~~a~~~~~~~~~~~~~----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~ 432 (666)
+-....|+++.|+..++.....++. ....+.++|...|+++.|+..++..
T Consensus 7 ~~~~~~g~y~~ai~~~~~~~~~~p~~~~e~~~~l~r~yi~~g~~~~al~~~~~~-------------------------- 60 (291)
T 3mkr_A 7 KNAFYIGSYQQCINEAQRVKPSSPERDVERDVFLYRAYLAQRKYGVVLDEIKPS-------------------------- 60 (291)
T ss_dssp HHHHHTTCHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHHHTTCHHHHHHHSCTT--------------------------
T ss_pred HHHHHHHHHHHHHHHHHhcccCCchhhHHHHHHHHHHHHHCCCHHHHHHHhccc--------------------------
Confidence 3445678888888887766554332 3344567788888888777654331
Q ss_pred hhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCC----CC-CHHHHHHHHHHHHHcCChhHHHHHHH
Q 047767 433 LGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIP----SP-NVVCFTSIMNGYSRNGMGREALDMLE 507 (666)
Q Consensus 433 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~~~~~~li~~~~~~~~~~~a~~~~~ 507 (666)
-+|+...+..+...+...++.++|.+.++++. .| +...+..+..++...|++++|++.++
T Consensus 61 ---------------~~~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~ 125 (291)
T 3mkr_A 61 ---------------SAPELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLH 125 (291)
T ss_dssp ---------------SCHHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHT
T ss_pred ---------------CChhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHh
Confidence 13344555667778889999999999998764 24 56677778899999999999999998
Q ss_pred HHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHH---HHHHHHHHhcCChHHHHHHHHhCC--C
Q 047767 508 VMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHY---SCMIDMLGRAGILDKAEELLQQTP--G 582 (666)
Q Consensus 508 ~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~--~ 582 (666)
+ +.+...+..++..+.+.|++++|.+.++++.+. .|+.... ..++..+...|++++|..+|+++. .
T Consensus 126 ~------~~~~~~~~~l~~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~ 196 (291)
T 3mkr_A 126 Q------GDSLECMAMTVQILLKLDRLDLARKELKKMQDQ---DEDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC 196 (291)
T ss_dssp T------CCSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS
T ss_pred C------CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC
Confidence 7 456678888999999999999999999999976 4664322 234455556699999999999876 3
Q ss_pred CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchH-HHHHHHHHHhCCC
Q 047767 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV-SMQIRETALARKL 651 (666)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~~~~ 651 (666)
+++...|+.+..++...|++++|++.++++++.+|+++.++.+++.++...|+.++ +.++++++.+..+
T Consensus 197 p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~~~P 266 (291)
T 3mkr_A 197 SPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKDSGHPETLINLVVLSQHLGKPPEVTNRYLSQLKDAHR 266 (291)
T ss_dssp CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCT
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCC
Confidence 44788999999999999999999999999999999999999999999999999976 5688888876443
No 30
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.69 E-value=1.1e-15 Score=151.67 Aligned_cols=157 Identities=11% Similarity=-0.057 Sum_probs=128.5
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC---CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHH
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIP---DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMI 561 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~ 561 (666)
.+..+...+...|++++|+.+++++.+. .| +..++..+...+...|++++|.+.++++.+. .+.+..+|..++
T Consensus 179 ~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~--~p~~~~~~~~l~ 254 (365)
T 4eqf_A 179 LTRRMSKSPVDSSVLEGVKELYLEAAHQ--NGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTV--RPEDYSLWNRLG 254 (365)
T ss_dssp ----------CCHHHHHHHHHHHHHHHH--SCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHH
T ss_pred HHHHHHHHHhhhhhHHHHHHHHHHHHHh--CcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHh--CCCCHHHHHHHH
Confidence 4455677888999999999999999984 44 4678889999999999999999999999875 233488899999
Q ss_pred HHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC------------CcchHHHHH
Q 047767 562 DMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV------------DFAVYSQVS 627 (666)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------------~~~~~~~l~ 627 (666)
.+|...|++++|++.++++. ..| +...|..+...|...|++++|...++++++..|+ +..+|..|+
T Consensus 255 ~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~ 334 (365)
T 4eqf_A 255 ATLANGDRSEEAVEAYTRALEIQPGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALR 334 (365)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHH
Confidence 99999999999999999765 344 6889999999999999999999999999998877 367899999
Q ss_pred HHHhhcCCchHHHHHHHH
Q 047767 628 NFYSEIGEFEVSMQIRET 645 (666)
Q Consensus 628 ~~~~~~g~~~~A~~~~~~ 645 (666)
.++...|+.+.|..+.++
T Consensus 335 ~~~~~~g~~~~a~~~~~~ 352 (365)
T 4eqf_A 335 IALSLMDQPELFQAANLG 352 (365)
T ss_dssp HHHHHHTCHHHHHHHHTT
T ss_pred HHHHHcCcHHHHHHHHHh
Confidence 999999999999887653
No 31
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.69 E-value=4.7e-14 Score=147.14 Aligned_cols=405 Identities=11% Similarity=0.106 Sum_probs=275.9
Q ss_pred CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 047767 175 NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254 (666)
Q Consensus 175 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 254 (666)
+...|..++. +.+.|+++.|..+|+++.+. .+-+...|...+..+.+.|+.+.|..+|+.+++.. |+...|..++
T Consensus 12 ~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~~---p~~~lw~~~~ 86 (530)
T 2ooe_A 12 DLDAWSILIR-EAQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMKV---LHIDLWKCYL 86 (530)
T ss_dssp CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTTC---CCHHHHHHHH
T ss_pred CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcC---CChHHHHHHH
Confidence 5668888888 47899999999999999875 34456678888999999999999999999999874 4777787777
Q ss_pred HHH-HccCChHHHHH----HhccCC------CCChhhHHHHHHHHHc---------CCChHHHHHHHHHhHhcCCCCCh-
Q 047767 255 DFY-SACGSLIEAKK----SFDFIP------VDDVISWNSIVSIYAD---------YDLIFDALELFFRMQLCRKRPSI- 313 (666)
Q Consensus 255 ~~~-~~~~~~~~A~~----~~~~~~------~~~~~~~~~li~~~~~---------~g~~~~a~~~~~~m~~~~~~p~~- 313 (666)
... ...|+.++|.+ +|+... .++...|...+....+ .|+++.|..+|++.+.. |..
T Consensus 87 ~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~---P~~~ 163 (530)
T 2ooe_A 87 SYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVN---PMIN 163 (530)
T ss_dssp HHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTS---CCTT
T ss_pred HHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhc---hhhh
Confidence 533 45677776654 555431 2356678877776554 68899999999999873 432
Q ss_pred --hhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHH----------hccCC---CC
Q 047767 314 --RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAV----------FESAP---GR 378 (666)
Q Consensus 314 --~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~----------~~~~~---~~ 378 (666)
..|..........|. ..+..++. .+.+++..|..+ ++... .+
T Consensus 164 ~~~~~~~~~~~e~~~~~-~~~~~~l~----------------------~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p 220 (530)
T 2ooe_A 164 IEQLWRDYNKYEEGINI-HLAKKMIE----------------------DRSRDYMNARRVAKEYETVMKGLDRNAPSVPP 220 (530)
T ss_dssp HHHHHHHHHHHHHHHCH-HHHHHHHH----------------------TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCC
T ss_pred HHHHHHHHHHHHHhhch-hHHHHHHH----------------------HhhHHHHHHHHHHHHHHHHHHHhccccccCCC
Confidence 222222211101110 00111110 011222233222 22110 11
Q ss_pred C--------cccHHHHHHHHHhc----CCh----hHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhc-------ccchh-
Q 047767 379 S--------LECCNSLMTSLLHS----GNI----KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSA-------SANLG- 434 (666)
Q Consensus 379 ~--------~~~~~~li~~~~~~----~~~----~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~-------~~~~~- 434 (666)
+ ...|...+...... ++. .++..+|++..... +-+...|...... +.. .|+.+
T Consensus 221 ~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~-p~~~~~w~~~~~~--~~~~~~~~~~~g~~~~ 297 (530)
T 2ooe_A 221 QNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVL-GHHPDIWYEAAQY--LEQSSKLLAEKGDMNN 297 (530)
T ss_dssp C--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHH-TTCHHHHHHHHHH--HHHHHHHHHTTTCCHH
T ss_pred CCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHH--HHHhchhhhhccchhh
Confidence 1 12344433322221 222 36778888887752 2244455544444 332 57776
Q ss_pred ------hHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CC-H-HHHHHHHHHHHHcCChhHHHH
Q 047767 435 ------SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PN-V-VCFTSIMNGYSRNGMGREALD 504 (666)
Q Consensus 435 ------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~-~-~~~~~li~~~~~~~~~~~a~~ 504 (666)
.|..+++...+.-.+.+...+..++..+.+.|++++|..+|+++.+ |+ . ..|..++..+.+.|+.++|..
T Consensus 298 a~~~~~~A~~~~~~Al~~~~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~ 377 (530)
T 2ooe_A 298 AKLFSDEAANIYERAISTLLKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRM 377 (530)
T ss_dssp HHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSSSSCHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhhhHHHHHHHHHHHHHhCcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCccccCchHHHHHHHHHHHHhcCHHHHHH
Confidence 7888888877643456788899999999999999999999998763 43 3 589999999999999999999
Q ss_pred HHHHHHHcCCCCC-HHHHHHHHHH-hcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 505 MLEVMIQRGLIPD-KVTFLCVLAG-CNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 505 ~~~~m~~~g~~p~-~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
+|++..+. .|+ ...|...... +...|+.++|..+|+...+. .|+ +..|..++..+.+.|+.++|..+|++..
T Consensus 378 ~~~~Al~~--~~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~---~p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al 452 (530)
T 2ooe_A 378 IFKKARED--ARTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVL 452 (530)
T ss_dssp HHHHHHTC--TTCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHH---HTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHH
T ss_pred HHHHHHhc--cCCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHH---CCCCHHHHHHHHHHHHhCCCHhhHHHHHHHHH
Confidence 99999884 443 2233322222 33589999999999999876 354 7889999999999999999999999765
Q ss_pred -C---CC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 582 -G---GG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 582 -~---~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
. .| ....|...+......|+.+.+..+++++.+..|.
T Consensus 453 ~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~~p~ 495 (530)
T 2ooe_A 453 TSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTAFRE 495 (530)
T ss_dssp HSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHTHH
T ss_pred hccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCch
Confidence 2 23 2448888888888899999999999999999885
No 32
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.68 E-value=1.4e-15 Score=148.11 Aligned_cols=256 Identities=9% Similarity=-0.029 Sum_probs=186.9
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHH
Q 047767 383 CNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAY 462 (666)
Q Consensus 383 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 462 (666)
+..+...+...|++++|..+|+++.+.. +.+...+..+... +...++++.|...+..+.+.. +.+...+..+...+
T Consensus 24 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~--~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 99 (327)
T 3cv0_A 24 PMEEGLSMLKLANLAEAALAFEAVCQAA-PEREEAWRSLGLT--QAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSH 99 (327)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHH--HHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHHH
Confidence 4444455555555555555555555432 1123333333333 455555555555555555543 33455666777778
Q ss_pred HhhCCHHHHHHHhccCCC--C-CHHHHHHH--------------HH-HHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047767 463 SRCGHIELSHQVFEKIPS--P-NVVCFTSI--------------MN-GYSRNGMGREALDMLEVMIQRGLIPDKVTFLCV 524 (666)
Q Consensus 463 ~~~g~~~~A~~~~~~~~~--~-~~~~~~~l--------------i~-~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l 524 (666)
...|++++|.+.+++..+ | +...+..+ .. .+...|++++|...++++.+.. +.+...+..+
T Consensus 100 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l 178 (327)
T 3cv0_A 100 TNEHNANAALASLRAWLLSQPQYEQLGSVNLQADVDIDDLNVQSEDFFFAAPNEYRECRTLLHAALEMN-PNDAQLHASL 178 (327)
T ss_dssp HHTTCHHHHHHHHHHHHHTSTTTTTC--------------------CCTTSHHHHHHHHHHHHHHHHHS-TTCHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhCCccHHHHHHHhHHHHHHHHHHHHHHhHHHHHcccHHHHHHHHHHHHhhC-CCCHHHHHHH
Confidence 888888888888876652 2 22222222 22 3677889999999999999853 3356688899
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCC
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGN 601 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 601 (666)
...+...|++++|.+.++++.+. .|+ ...+..++.+|...|++++|.+.++++. ..| +...|..+...+...|+
T Consensus 179 a~~~~~~~~~~~A~~~~~~~~~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~g~ 255 (327)
T 3cv0_A 179 GVLYNLSNNYDSAAANLRRAVEL---RPDDAQLWNKLGATLANGNRPQEALDAYNRALDINPGYVRVMYNMAVSYSNMSQ 255 (327)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHhccHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcc
Confidence 99999999999999999999875 344 7889999999999999999999999765 334 67889999999999999
Q ss_pred hHHHHHHHHHHHhcCCC------------CcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 602 EIIGRRVANILMELEPV------------DFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 602 ~~~a~~~~~~~~~~~p~------------~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
+++|.+.++++++..|. ++.++..++.++...|++++|..++++.
T Consensus 256 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 312 (327)
T 3cv0_A 256 YDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYAQN 312 (327)
T ss_dssp HHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 99999999999999998 7889999999999999999999998744
No 33
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.68 E-value=1.8e-15 Score=150.15 Aligned_cols=293 Identities=13% Similarity=-0.005 Sum_probs=147.8
Q ss_pred hcCCChhhHHH-HhhcCCC-----C--CchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCh
Q 047767 55 VKSGHLNSAKK-LFDEMPA-----R--DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126 (666)
Q Consensus 55 ~~~g~~~~A~~-~~~~~~~-----~--~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 126 (666)
.-.|++++|.+ .|++... | +...+..+...+.+.|++++|...|+++.+.. +.+...+..+...+...|++
T Consensus 36 ~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~ 114 (368)
T 1fch_A 36 PWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQD-PKHMEAWQYLGTTQAENEQE 114 (368)
T ss_dssp ----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHCcCH
Confidence 34467777776 6665431 1 34556677777777777777777777777654 34566677777777777777
Q ss_pred HHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC--CC-cccHHHHHHHHHhcCCchHHHHHHHHHH
Q 047767 127 TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE--RN-LATWNLMLRAFCELSRPDEVLRMYNKMK 203 (666)
Q Consensus 127 ~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~--~~-~~~~~~li~~~~~~~~~~~a~~~~~~m~ 203 (666)
++|...++.+.+.. +.+..++..+...|...|++++|.+.|+.+.. |+ ...+..+... ..
T Consensus 115 ~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~-------~~--------- 177 (368)
T 1fch_A 115 LLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPAYAHLVTPAEEG-------AG--------- 177 (368)
T ss_dssp HHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTTTGGGCC-----------------------
T ss_pred HHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHH-------hh---------
Confidence 77777777777664 34555566666666666666666666655432 11 1111111000 00
Q ss_pred HcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCc--hHHHHHHHHHHHHccCChHHHHHHhccCC---CCCh
Q 047767 204 AEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDV--NIFVANALVDFYSACGSLIEAKKSFDFIP---VDDV 278 (666)
Q Consensus 204 ~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~A~~~~~~~~---~~~~ 278 (666)
...+. ..+. .+..+...|++++|...++.+.+.. +. +..++..+...+.+.|++++|...|+... +.+.
T Consensus 178 --~~~~~-~~~~-~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~ 251 (368)
T 1fch_A 178 --GAGLG-PSKR-ILGSLLSDSLFLEVKELFLAAVRLD--PTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVRPNDY 251 (368)
T ss_dssp -----------C-TTHHHHHHHHHHHHHHHHHHHHHHS--TTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCH
T ss_pred --hhccc-HHHH-HHHHHhhcccHHHHHHHHHHHHHhC--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCCH
Confidence 00000 0000 1111224555555555555555553 22 45555555555555555555555555432 2244
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCC---------Cch
Q 047767 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDH---------GSV 349 (666)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~---------~~~ 349 (666)
..|..+...+...|++++|...++++.... +.+...+..+...+...|+++.|...++.+.+..... ...
T Consensus 252 ~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 330 (368)
T 1fch_A 252 LLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAMSE 330 (368)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCCCH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccchhh
Confidence 556666666666666666666666655432 1233445555555555555555555555554432211 013
Q ss_pred hHHhHHHHHHHhcCChHHHHHHh
Q 047767 350 HVQSALTDMYGKCNVIESSVAVF 372 (666)
Q Consensus 350 ~~~~~l~~~~~~~~~~~~a~~~~ 372 (666)
.++..+..+|...|+.+.|..++
T Consensus 331 ~~~~~l~~~~~~~g~~~~A~~~~ 353 (368)
T 1fch_A 331 NIWSTLRLALSMLGQSDAYGAAD 353 (368)
T ss_dssp HHHHHHHHHHHHHTCGGGHHHHH
T ss_pred HHHHHHHHHHHHhCChHhHHHhH
Confidence 44555555555555555555444
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.68 E-value=4.3e-17 Score=169.88 Aligned_cols=149 Identities=11% Similarity=0.030 Sum_probs=129.7
Q ss_pred CchhhhhHHHHhHhcCCChhhHHHHhhcCC-------CCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHH
Q 047767 42 LNIYSSNRTIDDFVKSGHLNSAKKLFDEMP-------ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFS 114 (666)
Q Consensus 42 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~ 114 (666)
--..+|++||++|++.|++++|.++|++|. .||+.+||+||.+||+.|++++|.++|++|.+.|+.||..||+
T Consensus 125 ~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYn 204 (1134)
T 3spa_A 125 GQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYA 204 (1134)
T ss_dssp HHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHH
Confidence 344689999999999999999999997764 5899999999999999999999999999999999999999999
Q ss_pred HHHHHHHcCCCh-HHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC-----CCcccHHHHHHHHHh
Q 047767 115 SVLSVCSNAGFY-TEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE-----RNLATWNLMLRAFCE 188 (666)
Q Consensus 115 ~ll~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~-----~~~~~~~~li~~~~~ 188 (666)
++|.++++.|+. +.|.++|++|.+.|+.||..+|+.++....+.+-++.+.++...+.. +.+.+...|...|.+
T Consensus 205 tLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f~p~~~~~~~~~t~~LL~dl~s~ 284 (1134)
T 3spa_A 205 AALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRATVLKAVHKVKPTFSLPPQLPPPVNTSKLLRDVYAK 284 (1134)
T ss_dssp HHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCCCCCCCCCCCCCCCTTTHHHHCC
T ss_pred HHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHHHHHHHHHHhCcccCCCCCCcccccchHHHHHHHcc
Confidence 999999999985 78999999999999999999999999998888777777777665553 123455566666666
Q ss_pred cC
Q 047767 189 LS 190 (666)
Q Consensus 189 ~~ 190 (666)
.+
T Consensus 285 d~ 286 (1134)
T 3spa_A 285 DG 286 (1134)
T ss_dssp CS
T ss_pred CC
Confidence 55
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.64 E-value=8.9e-17 Score=167.53 Aligned_cols=132 Identities=14% Similarity=0.224 Sum_probs=115.1
Q ss_pred CCCchHHHHHHHHHHHhhCCHHHHHHHhccCC-------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHH
Q 047767 448 FESNIAVSCSLMDAYSRCGHIELSHQVFEKIP-------SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVT 520 (666)
Q Consensus 448 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~ 520 (666)
...-..+||++|++|++.|++++|.++|++|. .||+++||+||.+||+.|++++|.++|++|.+.|+.||.+|
T Consensus 123 ~~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvT 202 (1134)
T 3spa_A 123 LSGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLS 202 (1134)
T ss_dssp CCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHH
T ss_pred HHhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHH
Confidence 34456789999999999999999999997653 59999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcCCCc-HHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 047767 521 FLCVLAGCNHSGM-VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580 (666)
Q Consensus 521 ~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (666)
|+++|.++++.|+ .++|.++|++|.+. |+.||..+|++++....+.+-++...++..++
T Consensus 203 YntLI~glcK~G~~~e~A~~Ll~EM~~k-G~~PD~vtY~~ll~~~eR~~vL~~Vrkv~P~f 262 (1134)
T 3spa_A 203 YAAALQCMGRQDQDAGTIERCLEQMSQE-GLKLQALFTAVLLSEEDRATVLKAVHKVKPTF 262 (1134)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHH-TCCSHHHHHHSCCCHHHHHHHHHHHGGGCCCC
T ss_pred HHHHHHHHHhCCCcHHHHHHHHHHHHHc-CCCCChhhcccccChhhHHHHHHHHHHhCccc
Confidence 9999999999998 47899999999999 99999999999988777665444444443333
No 36
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.62 E-value=9.5e-14 Score=142.89 Aligned_cols=134 Identities=11% Similarity=-0.052 Sum_probs=71.7
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH--HHHHHHH-HhcCCCcHHHHHHHHHHhHHhhCCCCCchHHH
Q 047767 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV--TFLCVLA-GCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS 558 (666)
Q Consensus 482 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~ 558 (666)
+...+..+...+...|++++|+..|++..+....|... .+..+.. .....|+.++|++.|++..+ +.|+.....
T Consensus 333 ~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~---i~~~~~~~~ 409 (472)
T 4g1t_A 333 LFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVK---INQKSREKE 409 (472)
T ss_dssp TCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHH---SCCCCHHHH
T ss_pred hhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHh---cCcccHHHH
Confidence 34556677788888889999999998888743332221 2222222 24567889999999998874 467654333
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 047767 559 CMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 627 (666)
... ..+.++++... ..| +..+|..++..+...|++++|++.|+++++..|.+|.+..-+|
T Consensus 410 ~~~---------~~l~~~~~~~l~~~p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~~~~p~a~~~~G 471 (472)
T 4g1t_A 410 KMK---------DKLQKIAKMRLSKNGADSEALHVLAFLQELNEKMQQADEDSERGLESGSLIPSASSWNG 471 (472)
T ss_dssp HHH---------HHHHHHHHHHHHHCC-CTTHHHHHHHHHHHHHHCC------------------------
T ss_pred HHH---------HHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCCcHhhcCC
Confidence 222 22333443322 234 6788999999999999999999999999999999888776655
No 37
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.61 E-value=2.3e-14 Score=134.16 Aligned_cols=218 Identities=10% Similarity=0.006 Sum_probs=175.1
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 047767 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461 (666)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 461 (666)
.+..+...+...|++++|+..|++..+.. . +...+..+...
T Consensus 7 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~-------------------------------------~~~~~~~~~~~ 47 (258)
T 3uq3_A 7 KEKAEGNKFYKARQFDEAIEHYNKAWELH--K-------------------------------------DITYLNNRAAA 47 (258)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--C-------------------------------------CTHHHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHHhh--c-------------------------------------cHHHHHHHHHH
Confidence 45666667777777777777777776553 2 33444556666
Q ss_pred HHhhCCHHHHHHHhccCCC--C----C----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCC
Q 047767 462 YSRCGHIELSHQVFEKIPS--P----N----VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHS 531 (666)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~--~----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~ 531 (666)
+...|++++|...|++..+ | + ...|..+...+...|++++|...+++..+ +.|+.. .+...
T Consensus 48 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~--~~~~~~-------~~~~~ 118 (258)
T 3uq3_A 48 EYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARIGNAYHKLGDLKKTIEYYQKSLT--EHRTAD-------ILTKL 118 (258)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCCCHH-------HHHHH
T ss_pred HHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHh--cCchhH-------HHHHH
Confidence 7778888888888877653 1 1 57788889999999999999999999998 556643 34455
Q ss_pred CcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHH
Q 047767 532 GMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRV 608 (666)
Q Consensus 532 g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~ 608 (666)
|++++|.+.++.+... .|+ ...+..++..+...|++++|++.++++. .+.+...|..+...+...|++++|+..
T Consensus 119 ~~~~~a~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 195 (258)
T 3uq3_A 119 RNAEKELKKAEAEAYV---NPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIAD 195 (258)
T ss_dssp HHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHc---CcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHhCCHHHHHHH
Confidence 7899999999998753 454 7788889999999999999999998765 334678899999999999999999999
Q ss_pred HHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 609 ANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 609 ~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
++++++..|+++.++..++.+|...|++++|.+.++++.+..
T Consensus 196 ~~~al~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~ 237 (258)
T 3uq3_A 196 CNKAIEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKD 237 (258)
T ss_dssp HHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC
Confidence 999999999999999999999999999999999999887644
No 38
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.60 E-value=1.9e-14 Score=140.09 Aligned_cols=272 Identities=9% Similarity=-0.044 Sum_probs=144.9
Q ss_pred chhhhhHHHHhHhcCCChhhHHHHhhcCC---CCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHH
Q 047767 43 NIYSSNRTIDDFVKSGHLNSAKKLFDEMP---ARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSV 119 (666)
Q Consensus 43 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~ 119 (666)
+...+..+...+.+.|++++|..+|+++. ..+...|..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~ 98 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVS 98 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHHH
Confidence 44556677778888888888888888875 2356677778888888888888888888887764 3466777888888
Q ss_pred HHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHH--HHHhcCCchHHHH
Q 047767 120 CSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLR--AFCELSRPDEVLR 197 (666)
Q Consensus 120 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~--~~~~~~~~~~a~~ 197 (666)
+...|++++|.+.++.+.+.. +.+...+..+.... ++......+.. .+...|++++|..
T Consensus 99 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~------------------~~~~~~~~~~~~~~~~~~~~~~~A~~ 159 (327)
T 3cv0_A 99 HTNEHNANAALASLRAWLLSQ-PQYEQLGSVNLQAD------------------VDIDDLNVQSEDFFFAAPNEYRECRT 159 (327)
T ss_dssp HHHTTCHHHHHHHHHHHHHTS-TTTTTC--------------------------------------CCTTSHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CccHHHHHHHhHHH------------------HHHHHHHHHHHhHHHHHcccHHHHHH
Confidence 888888888888888887754 22222332220000 00000001101 1333344444444
Q ss_pred HHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC---
Q 047767 198 MYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP--- 274 (666)
Q Consensus 198 ~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~--- 274 (666)
.++++.+.. +.+...+..+...+...|++++|...++.+.+.. +.+..++..+...+...|++++|...|+...
T Consensus 160 ~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 236 (327)
T 3cv0_A 160 LLHAALEMN-PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYNRALDIN 236 (327)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHhhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 444444331 1133344444444444444444444444444442 3334444444445555555555544444432
Q ss_pred CCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCC-----------ChhhHHHHHHHHhccCChhhHHHHHH
Q 047767 275 VDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRP-----------SIRSFVEFLNFASRTGNVYFGKQIHG 337 (666)
Q Consensus 275 ~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p-----------~~~t~~~ll~~~~~~~~~~~a~~~~~ 337 (666)
+.+...+..+...+...|++++|...+++........ +...+..+..++...|+.+.|..+++
T Consensus 237 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 310 (327)
T 3cv0_A 237 PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTYA 310 (327)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHTT
T ss_pred CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 2234445555555555555555555555544322111 23444555555555555555555544
No 39
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.57 E-value=1.2e-13 Score=129.26 Aligned_cols=238 Identities=10% Similarity=0.027 Sum_probs=192.4
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC--CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCCHHHHHHHhc
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPG--RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI--GLDEVTLSTTLK 423 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~~~~~~~ll~ 423 (666)
....+..+...+...|++++|...|+.... .+...+..+...+...|++++|+..+++..+... .|+..
T Consensus 4 ~a~~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~------- 76 (258)
T 3uq3_A 4 MADKEKAEGNKFYKARQFDEAIEHYNKAWELHKDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYK------- 76 (258)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHH-------
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchH-------
Confidence 456788899999999999999999976532 5677888999999999999999999999876320 11110
Q ss_pred hhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChhH
Q 047767 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGRE 501 (666)
Q Consensus 424 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~ 501 (666)
.....+..+...+...|++++|...|++..+ |+. ..+...|++++
T Consensus 77 --------------------------~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~-------~~~~~~~~~~~ 123 (258)
T 3uq3_A 77 --------------------------VISKSFARIGNAYHKLGDLKKTIEYYQKSLTEHRTA-------DILTKLRNAEK 123 (258)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCH-------HHHHHHHHHHH
T ss_pred --------------------------HHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCchh-------HHHHHHhHHHH
Confidence 0134566677888899999999999987764 443 34666788999
Q ss_pred HHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhC
Q 047767 502 ALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQT 580 (666)
Q Consensus 502 a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (666)
|...++++.. ..|+.. .+..+...+...|++++|...++++.+. .+.+...+..++.+|...|++++|++.++++
T Consensus 124 a~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a 199 (258)
T 3uq3_A 124 ELKKAEAEAY--VNPEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKR--APEDARGYSNRAAALAKLMSFPEAIADCNKA 199 (258)
T ss_dssp HHHHHHHHHH--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHH--cCcchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 9999999988 556554 7888888999999999999999999875 2334788999999999999999999999876
Q ss_pred C-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC------CCCcchHHHHHHH
Q 047767 581 P-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELE------PVDFAVYSQVSNF 629 (666)
Q Consensus 581 ~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~ 629 (666)
. ..| +...|..+...+...|++++|...++++++.. |++..++..+..+
T Consensus 200 l~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~p~~~~~~~~l~~~ 256 (258)
T 3uq3_A 200 IEKDPNFVRAYIRKATAQIAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKA 256 (258)
T ss_dssp HHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHT
T ss_pred HHhCHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhChhhcCCCchHHHHHHHHHh
Confidence 5 334 67889999999999999999999999999998 8887777766654
No 40
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.57 E-value=2e-13 Score=127.22 Aligned_cols=198 Identities=5% Similarity=-0.103 Sum_probs=168.4
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 528 (666)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|.+.++++.+.. +.+...+..+...+
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 115 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEIDPSSADAHAALAVVFQTEMEPKLADEEYRKALASD-SRNARVLNNYGGFL 115 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcCCChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHH
Confidence 45566777888889999999998887763 467788889999999999999999999998853 23556788888899
Q ss_pred cCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHH
Q 047767 529 NHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIG 605 (666)
Q Consensus 529 ~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a 605 (666)
...|++++|.++++++... +..|+ ...+..++.+|...|++++|.+.++++. ..| +...+..+...+...|++++|
T Consensus 116 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 194 (252)
T 2ho1_A 116 YEQKRYEEAYQRLLEASQD-TLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLNRNQPSVALEMADLLYKEREYVPA 194 (252)
T ss_dssp HHTTCHHHHHHHHHHHTTC-TTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHhHHHHHHHHHHHHHhC-ccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHcCCHHHH
Confidence 9999999999999998862 34565 7788889999999999999999998765 233 678888899999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
...++++++..|+++..+..++.++...|++++|.++++++.+...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~p 240 (252)
T 2ho1_A 195 RQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLYP 240 (252)
T ss_dssp HHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCC
Confidence 9999999999999999999999999999999999999999887654
No 41
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.56 E-value=4.4e-13 Score=122.38 Aligned_cols=200 Identities=9% Similarity=-0.083 Sum_probs=172.4
Q ss_pred CchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHH
Q 047767 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLA 526 (666)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~ 526 (666)
.+...+..+...+...|++++|.+.|++..+ .+...+..+...+...|++++|...++++.+.. +.+..++..+..
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~ 84 (225)
T 2vq2_A 6 QVSNIKTQLAMEYMRGQDYRQATASIEDALKSDPKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK-PDSAEINNNYGW 84 (225)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCChHHHHHHHH
Confidence 3456677788889999999999999987763 467889999999999999999999999999843 335568888999
Q ss_pred HhcCC-CcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCh
Q 047767 527 GCNHS-GMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNE 602 (666)
Q Consensus 527 ~~~~~-g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~ 602 (666)
.+... |++++|...++++.+. +..|+ ...+..++.++...|++++|++.++++. ..| +...+..+...+...|++
T Consensus 85 ~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~ 163 (225)
T 2vq2_A 85 FLCGRLNRPAESMAYFDKALAD-PTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQPQFPPAFKELARTKMLAGQL 163 (225)
T ss_dssp HHHTTTCCHHHHHHHHHHHHTS-TTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCH
T ss_pred HHHHhcCcHHHHHHHHHHHHcC-cCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCchHHHHHHHHHHHcCCH
Confidence 99999 9999999999999873 34555 6788899999999999999999998765 334 678888999999999999
Q ss_pred HHHHHHHHHHHhcCC-CCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 603 IIGRRVANILMELEP-VDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 603 ~~a~~~~~~~~~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
++|...++++++..| .++..+..++.++...|+.++|..+++.+.+...
T Consensus 164 ~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~p 213 (225)
T 2vq2_A 164 GDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQANFP 213 (225)
T ss_dssp HHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHhCC
Confidence 999999999999999 9999999999999999999999999998876543
No 42
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.56 E-value=1.9e-13 Score=120.45 Aligned_cols=164 Identities=12% Similarity=0.074 Sum_probs=144.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHH
Q 047767 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSC 559 (666)
Q Consensus 482 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 559 (666)
+...|..+...|...|++++|+..|++..+ +.|+. ..+..+...+.+.|++++|...+...... .|+ ...+..
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~---~~~~~~~~~~ 78 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLK--ADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL---DTTSAEAYYI 78 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCCCHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CchhHHHHHH
Confidence 567788899999999999999999999998 55654 47888889999999999999999999865 444 777888
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCch
Q 047767 560 MIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637 (666)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 637 (666)
+...+...+++++|.+.+++.. ..| +...+..+...+...|++++|++.++++++.+|.++.+|..+|.+|...|+++
T Consensus 79 ~~~~~~~~~~~~~a~~~~~~a~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 79 LGSANFMIDEKQAAIDALQRAIALNTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCHH
Confidence 8899999999999999998765 334 77888899999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhCC
Q 047767 638 VSMQIRETALARK 650 (666)
Q Consensus 638 ~A~~~~~~~~~~~ 650 (666)
+|++.|+++.+..
T Consensus 159 ~A~~~~~~al~~~ 171 (184)
T 3vtx_A 159 EAVKYFKKALEKE 171 (184)
T ss_dssp HHHHHHHHHHHTT
T ss_pred HHHHHHHHHHhCC
Confidence 9999999987643
No 43
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.55 E-value=1.4e-12 Score=132.15 Aligned_cols=371 Identities=10% Similarity=0.006 Sum_probs=214.4
Q ss_pred hcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCCh---HHHHHHhccCCCCChhhHHHHHHHHHcCC-----
Q 047767 221 CSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL---IEAKKSFDFIPVDDVISWNSIVSIYADYD----- 292 (666)
Q Consensus 221 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~---~~A~~~~~~~~~~~~~~~~~li~~~~~~g----- 292 (666)
+.+.|++++|.++|+...+.| .+ ..+..|...|...|+. ++|...|+...+.++..+..+...+...+
T Consensus 13 ~~~~g~~~~A~~~~~~aa~~g--~~--~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~~~~A~~~Lg~~~~~~~~~~~~ 88 (452)
T 3e4b_A 13 ALKRGDTVTAQQNYQQLAELG--YS--EAQVGLADIQVGTRDPAQIKQAEATYRAAADTSPRAQARLGRLLAAKPGATEA 88 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHT--CC--TGGGTCC----------------------------CHHHHHHHHHTC--CCHH
T ss_pred HHhCCCHHHHHHHHHHHHHCC--CH--HHHHHHHHHHHccCCCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHhCCCCCCc
Confidence 344555666666666655554 11 2233344445556666 77887777776556667777776555554
Q ss_pred ChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhh---HHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCC----h
Q 047767 293 LIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYF---GKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNV----I 365 (666)
Q Consensus 293 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~---a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----~ 365 (666)
++++|+..|++..+.|... .+..+-..+...+..+. +...+......| ++.....+...|...+. .
T Consensus 89 ~~~~A~~~~~~Aa~~g~~~---A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g----~~~a~~~Lg~~y~~~~~~~~~~ 161 (452)
T 3e4b_A 89 EHHEAESLLKKAFANGEGN---TLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG----YPEAGLAQVLLYRTQGTYDQHL 161 (452)
T ss_dssp HHHHHHHHHHHHHHTTCSS---CHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT----CTTHHHHHHHHHHHHTCGGGGH
T ss_pred CHHHHHHHHHHHHHCCCHH---HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC----CHHHHHHHHHHHHcCCCcccCH
Confidence 6788999999888765433 45555555555444333 334444444444 55677778888887774 4
Q ss_pred HHHHHHhccCCCCCcccHHHHHHHHHhcC---ChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHH
Q 047767 366 ESSVAVFESAPGRSLECCNSLMTSLLHSG---NIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCC 442 (666)
Q Consensus 366 ~~a~~~~~~~~~~~~~~~~~li~~~~~~~---~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~ 442 (666)
+.+..+++.....++..+..+...|...| +.++|+..|++..+.|... ...
T Consensus 162 ~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~-a~~------------------------- 215 (452)
T 3e4b_A 162 DDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVT-AQR------------------------- 215 (452)
T ss_dssp HHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSC-HHH-------------------------
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHH-HHH-------------------------
Confidence 44555566666666777788888888888 7888888888887765322 221
Q ss_pred HHHhCCCCchHHHHHHHHHHHhh----CCHHHHHHHhccCCCCCHHHHHHHHHH-H--HHcCChhHHHHHHHHHHHcCCC
Q 047767 443 AIKSGFESNIAVSCSLMDAYSRC----GHIELSHQVFEKIPSPNVVCFTSIMNG-Y--SRNGMGREALDMLEVMIQRGLI 515 (666)
Q Consensus 443 ~~~~~~~~~~~~~~~l~~~~~~~----g~~~~A~~~~~~~~~~~~~~~~~li~~-~--~~~~~~~~a~~~~~~m~~~g~~ 515 (666)
+..+...|... +++++|...|+.....+...+..|... + ...+++++|+..|++..+.|
T Consensus 216 ------------~~~Lg~~y~~g~~~~~d~~~A~~~~~~aa~g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g-- 281 (452)
T 3e4b_A 216 ------------VDSVARVLGDATLGTPDEKTAQALLEKIAPGYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD-- 281 (452)
T ss_dssp ------------HHHHHHHHTCGGGSSCCHHHHHHHHHHHGGGSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT--
T ss_pred ------------HHHHHHHHhCCCCCCCCHHHHHHHHHHHcCCCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC--
Confidence 11222223222 566667666665553345555566555 3 35678888888888888766
Q ss_pred CCHHHHHHHHHHhcC----CCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHH
Q 047767 516 PDKVTFLCVLAGCNH----SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR----AGILDKAEELLQQTPGGGDCM 587 (666)
Q Consensus 516 p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~ 587 (666)
+...+..+...|.. ..++++|.++|++.. .-++..+..|...|.. ..++++|..+|++....++..
T Consensus 282 -~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~~~ 355 (452)
T 3e4b_A 282 -QPRAELLLGKLYYEGKWVPADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNGQNS 355 (452)
T ss_dssp -CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTTCTT
T ss_pred -CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhChHH
Confidence 44455555555542 238888888888775 2346677777777766 348888888888776566666
Q ss_pred HHHHHHHHHHh----hCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 588 MWSSLLRSCRV----HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 588 ~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
....|...|.. ..|.++|...|+++.+..+.++......+......++..+|..+.++-++
T Consensus 356 A~~~Lg~~y~~G~g~~~d~~~A~~~~~~A~~~g~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 356 ADFAIAQLFSQGKGTKPDPLNAYVFSQLAKAQDTPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp HHHHHHHHHHSCTTBCCCHHHHHHHHHHHHTTCCHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 66677776653 35888888888888887665433333333333445566777777665543
No 44
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.55 E-value=1.1e-12 Score=123.88 Aligned_cols=224 Identities=10% Similarity=-0.072 Sum_probs=178.1
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHH
Q 047767 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458 (666)
Q Consensus 379 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 458 (666)
++.++..+...+...|++++|+..|++..+.+ +...+..+
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~----------------------------------------~~~a~~~l 44 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLK----------------------------------------ENSGCFNL 44 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT----------------------------------------CHHHHHHH
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCC----------------------------------------CHHHHHHH
Confidence 33445566667777788888888887776621 11223334
Q ss_pred HHHHHh----hCCHHHHHHHhccCCC-CCHHHHHHHHHHHHH----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 047767 459 MDAYSR----CGHIELSHQVFEKIPS-PNVVCFTSIMNGYSR----NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529 (666)
Q Consensus 459 ~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 529 (666)
...|.. .+++++|...|++..+ .+...+..+...|.. .+++++|+..|++..+.+ +...+..+...+.
T Consensus 45 g~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 121 (273)
T 1ouv_A 45 GVLYYQGQGVEKNLKKAASFYAKACDLNYSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLK---YAEGCASLGGIYH 121 (273)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHHHHcCCCcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcC---CccHHHHHHHHHH
Confidence 555666 7888888888876653 467778888888888 899999999999998865 5667777888887
Q ss_pred C----CCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh----cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh---
Q 047767 530 H----SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR----AGILDKAEELLQQTPGGGDCMMWSSLLRSCRV--- 598 (666)
Q Consensus 530 ~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~--- 598 (666)
. .+++++|.+.+++..+. + +...+..+...|.. .+++++|++.+++.....+...+..+...+..
T Consensus 122 ~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 122 DGKVVTRDFKKAVEYFTKACDL-N---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLKDSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp HCSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCS
T ss_pred cCCCcccCHHHHHHHHHHHHhc-C---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCC
Confidence 7 89999999999999875 3 56778888888888 89999999999887655677888888888988
Q ss_pred -hCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh----cCCchHHHHHHHHHHhCCC
Q 047767 599 -HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE----IGEFEVSMQIRETALARKL 651 (666)
Q Consensus 599 -~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 651 (666)
.+++++|+..++++.+..| +.++..|+.+|.. .|++++|.+.+++..+.|.
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~--~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~ 253 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELEN--GGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGA 253 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTC
T ss_pred CCccHHHHHHHHHHHHhCCC--HHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCC
Confidence 8999999999999999876 6789999999999 9999999999999887664
No 45
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.55 E-value=1.2e-13 Score=127.90 Aligned_cols=198 Identities=13% Similarity=0.041 Sum_probs=151.3
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHH
Q 047767 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAG 527 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~ 527 (666)
....+..+...+...|++++|...|++..+ .+...+..+...+...|++++|+..++++.+.. +.+...+..+...
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 100 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEENKEDAIPYINFANLLSSVNELERALAFYDKALELD-SSAATAYYGAGNV 100 (243)
T ss_dssp --------------------CCTTHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CcchHHHHHHHHH
Confidence 445566677778888999999888887753 467788888999999999999999999998842 3355678888888
Q ss_pred hcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHH
Q 047767 528 CNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIG 605 (666)
Q Consensus 528 ~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a 605 (666)
+...|++++|.+.++++.+. .+.+...+..++..|.+.|++++|.+.++++. .+.+...+..++..+...|++++|
T Consensus 101 ~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A 178 (243)
T 2q7f_A 101 YVVKEMYKEAKDMFEKALRA--GMENGDLFYMLGTVLVKLEQPKLALPYLQRAVELNENDTEARFQFGMCLANEGMLDEA 178 (243)
T ss_dssp HHHTTCHHHHHHHHHHHHHH--TCCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCHHH
T ss_pred HHHhccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHcCCHHHH
Confidence 99999999999999999875 23357788889999999999999999998765 234677888889999999999999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 606 RRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+..++++++..|+++.++..++.+|...|++++|.+.++++.+...
T Consensus 179 ~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~p 224 (243)
T 2q7f_A 179 LSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAIDIQP 224 (243)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHHccCc
Confidence 9999999999999999999999999999999999999998877543
No 46
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.54 E-value=2.8e-13 Score=128.13 Aligned_cols=208 Identities=11% Similarity=-0.061 Sum_probs=159.1
Q ss_pred hhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHH
Q 047767 427 VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREAL 503 (666)
Q Consensus 427 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 503 (666)
+...|+++.|...+..+.+.. +.+...+..+...+...|++++|...|++..+ .+...+..+...+...|++++|.
T Consensus 53 ~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~g~~~~A~ 131 (275)
T 1xnf_A 53 YDSLGLRALARNDFSQALAIR-PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELDPTYNYAHLNRGIALYYGGRDKLAQ 131 (275)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHcccHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCccccHHHHHHHHHHHHhccHHHHH
Confidence 445555555555555555443 33566777788889999999999999998763 46788999999999999999999
Q ss_pred HHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCC-
Q 047767 504 DMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG- 582 (666)
Q Consensus 504 ~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~- 582 (666)
..++++.+ ..|+.......+..+...|++++|...++..... .+++...+ .++..+...++.++|.+.+++...
T Consensus 132 ~~~~~a~~--~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~ 206 (275)
T 1xnf_A 132 DDLLAFYQ--DDPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEK--SDKEQWGW-NIVEFYLGNISEQTLMERLKADATD 206 (275)
T ss_dssp HHHHHHHH--HCTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHH--SCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCS
T ss_pred HHHHHHHH--hCCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcc
Confidence 99999998 4566655555555566779999999999888875 23444444 477788888999999999987662
Q ss_pred CC-----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHH
Q 047767 583 GG-----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643 (666)
Q Consensus 583 ~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 643 (666)
.| +...|..++..+...|++++|...++++++.+|++... .+.++...|++++|++.+
T Consensus 207 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~---~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 207 NTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANNVHNFVE---HRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCTTCHH---HHHHHHHHHHHHHC----
T ss_pred cccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCchhHHH---HHHHHHHHHHHHhhHHHH
Confidence 23 25788889999999999999999999999999977544 477888899999998876
No 47
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.53 E-value=3.5e-12 Score=129.31 Aligned_cols=344 Identities=9% Similarity=-0.032 Sum_probs=219.6
Q ss_pred HHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCCh---hhHHHHHHHHHHhCCCCCchhHHhHHHHHHH
Q 047767 284 IVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNV---YFGKQIHGYVTKLGFDHGSVHVQSALTDMYG 360 (666)
Q Consensus 284 li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 360 (666)
+...+.+.|++++|+.+|++..+.|- ...+..+-..+...|+. ++|...++...+. ++..+..+..++.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g~---~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~-----~~~A~~~Lg~~~~ 80 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELGY---SEAQVGLADIQVGTRDPAQIKQAEATYRAAADT-----SPRAQARLGRLLA 80 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHTC---CTGGGTCC---------------------------------CHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC-----CHHHHHHHHHHHH
Confidence 56677788999999999999887763 22333344444556666 7888888887754 3445566666444
Q ss_pred hcC-----ChHHHHHHhccCCCC-CcccHHHHHHHHHhcCChh---HHHHHHHHHHHcCCCCCHHHHHHHhchhhhhccc
Q 047767 361 KCN-----VIESSVAVFESAPGR-SLECCNSLMTSLLHSGNIK---DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431 (666)
Q Consensus 361 ~~~-----~~~~a~~~~~~~~~~-~~~~~~~li~~~~~~~~~~---~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 431 (666)
..+ +.++|...|++...+ ++..+..+...|...+..+ ++...+....+.|.. ..... +-.. +...+
T Consensus 81 ~~~~~~~~~~~~A~~~~~~Aa~~g~~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g~~-~a~~~--Lg~~--y~~~~ 155 (452)
T 3e4b_A 81 AKPGATEAEHHEAESLLKKAFANGEGNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAGYP-EAGLA--QVLL--YRTQG 155 (452)
T ss_dssp TC--CCHHHHHHHHHHHHHHHHTTCSSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHTCT-THHHH--HHHH--HHHHT
T ss_pred hCCCCCCcCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCCCH-HHHHH--HHHH--HHcCC
Confidence 444 677888888776544 4557777777777765533 455555555555542 22221 1111 33444
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhC---CHHHHHHHhccCCC---CCHHHHHHHHHHHHHc----CChhH
Q 047767 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCG---HIELSHQVFEKIPS---PNVVCFTSIMNGYSRN----GMGRE 501 (666)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~----~~~~~ 501 (666)
.++.+........+.-...++..+..+...|...| +.++|.+.|+...+ ++...+..|...|... +++++
T Consensus 156 ~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~~~a~~~~~Lg~~y~~g~~~~~d~~~ 235 (452)
T 3e4b_A 156 TYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGTVTAQRVDSVARVLGDATLGTPDEKT 235 (452)
T ss_dssp CGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHTCGGGSSCCHHH
T ss_pred CcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCCCHHH
Confidence 44444444333333333344447778888888888 88899998887653 4455556677777554 68899
Q ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHH-h--cCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcC-----ChHHH
Q 047767 502 ALDMLEVMIQRGLIPDKVTFLCVLAG-C--NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG-----ILDKA 573 (666)
Q Consensus 502 a~~~~~~m~~~g~~p~~~~~~~l~~~-~--~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-----~~~~A 573 (666)
|+..|++.. .| +...+..+... + ...+++++|.++|++..+. | +...+..|...|. .| ++++|
T Consensus 236 A~~~~~~aa-~g---~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~-g---~~~A~~~Lg~~y~-~G~g~~~d~~~A 306 (452)
T 3e4b_A 236 AQALLEKIA-PG---YPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAA-D---QPRAELLLGKLYY-EGKWVPADAKAA 306 (452)
T ss_dssp HHHHHHHHG-GG---STHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHH-HCSSSCCCHHHH
T ss_pred HHHHHHHHc-CC---CHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHH-cCCCCCCCHHHH
Confidence 999999887 43 22344444443 2 4588999999999998865 4 5777888888887 55 89999
Q ss_pred HHHHHhCCCCCCHHHHHHHHHHHHh----hCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh----cCCchHHHHHHHH
Q 047767 574 EELLQQTPGGGDCMMWSSLLRSCRV----HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE----IGEFEVSMQIRET 645 (666)
Q Consensus 574 ~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 645 (666)
+++|++.. ..+...+..|...|.. ..|+++|...|+++.+. .++.+...|+.+|.. ..+.++|..+|++
T Consensus 307 ~~~~~~Aa-~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~--g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~ 383 (452)
T 3e4b_A 307 EAHFEKAV-GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARN--GQNSADFAIAQLFSQGKGTKPDPLNAYVFSQL 383 (452)
T ss_dssp HHHHHTTT-TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTT--TCTTHHHHHHHHHHSCTTBCCCHHHHHHHHHH
T ss_pred HHHHHHHh-CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhh--ChHHHHHHHHHHHHhCCCCCCCHHHHHHHHHH
Confidence 99999888 7788888888877766 34899999999998874 456789999999975 4588999999999
Q ss_pred HHhCCCC
Q 047767 646 ALARKLT 652 (666)
Q Consensus 646 ~~~~~~~ 652 (666)
..+.|..
T Consensus 384 A~~~g~~ 390 (452)
T 3e4b_A 384 AKAQDTP 390 (452)
T ss_dssp HHTTCCH
T ss_pred HHHCCCH
Confidence 8887753
No 48
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.51 E-value=3.8e-13 Score=127.02 Aligned_cols=243 Identities=10% Similarity=0.022 Sum_probs=157.2
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhh
Q 047767 352 QSALTDMYGKCNVIESSVAVFESAPG---RSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS 428 (666)
Q Consensus 352 ~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~ 428 (666)
.......+...|++++|...|+.+.. .+...+..+...+...|++++|+..+++..+.+..|+.
T Consensus 6 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~------------- 72 (272)
T 3u4t_A 6 EFRYADFLFKNNNYAEAIEVFNKLEAKKYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKA------------- 72 (272)
T ss_dssp HHHHHHHHHTTTCHHHHHHHHHHHHHTTCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTC-------------
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhH-------------
Confidence 33445555555555555555554422 23445666666777777777777777776653211111
Q ss_pred cccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHH
Q 047767 429 ASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDM 505 (666)
Q Consensus 429 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~ 505 (666)
....+..+...+...|++++|...|+...+ .+...|..+...|...|++++|+..
T Consensus 73 ----------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~ 130 (272)
T 3u4t_A 73 ----------------------KSADFEYYGKILMKKGQDSLAIQQYQAAVDRDTTRLDMYGQIGSYFYNKGNFPLAIQY 130 (272)
T ss_dssp ----------------------CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHH
T ss_pred ----------------------HHHHHHHHHHHHHHcccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHccCHHHHHHH
Confidence 122344556667777777777777776552 3556777788888888888888888
Q ss_pred HHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCC---hHHHHHHHHhC
Q 047767 506 LEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGI---LDKAEELLQQT 580 (666)
Q Consensus 506 ~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~---~~~A~~~~~~~ 580 (666)
+++..+. .|+. ..+..+...+...+++++|.+.++++.+. .|+ ...+..+..++...|+ +++|...++++
T Consensus 131 ~~~al~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a 205 (272)
T 3u4t_A 131 MEKQIRP--TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLEL---KPNIYIGYLWRARANAAQDPDTKQGLAKPYYEKL 205 (272)
T ss_dssp HGGGCCS--SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHH
T ss_pred HHHHhhc--CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHcCcchhhHHHHHHHHHH
Confidence 8877763 4543 45555552333345888888888888765 444 6677777788877777 77777777654
Q ss_pred C----CCCC------HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC
Q 047767 581 P----GGGD------CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634 (666)
Q Consensus 581 ~----~~~~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 634 (666)
. ..|+ ...|..+...|...|++++|.+.++++++.+|+++.++..++.+....+
T Consensus 206 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~l~~~~~~~~ 269 (272)
T 3u4t_A 206 IEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPTNKKAIDGLKMKLEHHH 269 (272)
T ss_dssp HHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHC-------
T ss_pred HHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCccHHHHHHHhhhhhcccc
Confidence 3 2233 2467778888888999999999999999999999888888777665543
No 49
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.50 E-value=5.4e-13 Score=123.54 Aligned_cols=215 Identities=13% Similarity=0.104 Sum_probs=156.5
Q ss_pred CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHH
Q 047767 379 SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSL 458 (666)
Q Consensus 379 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 458 (666)
....|..+...+...|++++|...|+++.+. .|+ +...+..+
T Consensus 22 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~--~~~------------------------------------~~~~~~~l 63 (243)
T 2q7f_A 22 ASMTGGQQMGRGSEFGDYEKAAEAFTKAIEE--NKE------------------------------------DAIPYINF 63 (243)
T ss_dssp --------------------CCTTHHHHHTT--CTT------------------------------------CHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhCHHHHHHHHHHHHHh--Ccc------------------------------------cHHHHHHH
Confidence 3345666677777888888888888887753 222 23444556
Q ss_pred HHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHH
Q 047767 459 MDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK 535 (666)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~ 535 (666)
...+...|++++|...|++..+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 64 a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~ 142 (243)
T 2q7f_A 64 ANLLSSVNELERALAFYDKALELDSSAATAYYGAGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPK 142 (243)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCcchHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHH
Confidence 6677888888888888887653 467888889999999999999999999999853 335668888889999999999
Q ss_pred HHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHH
Q 047767 536 EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILM 613 (666)
Q Consensus 536 ~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 613 (666)
+|...++++.+. .+.+...+..++..|.+.|++++|++.++++. .+.+..+|..+...+...|++++|...+++++
T Consensus 143 ~A~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~ 220 (243)
T 2q7f_A 143 LALPYLQRAVEL--NENDTEARFQFGMCLANEGMLDEALSQFAAVTEQDPGHADAFYNAGVTYAYKENREKALEMLDKAI 220 (243)
T ss_dssp HHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTHHHHHHHHHH
T ss_pred HHHHHHHHHHHh--CCccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 999999999875 23357888999999999999999999998765 23467889999999999999999999999999
Q ss_pred hcCCCCcchHHHHHHHHhhcC
Q 047767 614 ELEPVDFAVYSQVSNFYSEIG 634 (666)
Q Consensus 614 ~~~p~~~~~~~~l~~~~~~~g 634 (666)
+.+|+++.++..++.+....|
T Consensus 221 ~~~p~~~~~~~~~~~l~~~~~ 241 (243)
T 2q7f_A 221 DIQPDHMLALHAKKLLGHHHH 241 (243)
T ss_dssp HHCTTCHHHHHHHTC------
T ss_pred ccCcchHHHHHHHHHHHhhcc
Confidence 999999998888776655443
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.50 E-value=5.9e-13 Score=130.47 Aligned_cols=223 Identities=8% Similarity=-0.030 Sum_probs=185.4
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 047767 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461 (666)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 461 (666)
.|+.+...+.+.|++++|+..+++.... .|+ +...|+.+...
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l--~P~------------------------------------~~~a~~~~g~~ 140 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIEL--NAA------------------------------------NYTVWHFRRVL 140 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHH--CTT------------------------------------CHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHh--Ccc------------------------------------CHHHHHHHHHH
Confidence 5677778888889999999999988764 333 34445556667
Q ss_pred HHhhCC-HHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHH
Q 047767 462 YSRCGH-IELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKE 536 (666)
Q Consensus 462 ~~~~g~-~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~ 536 (666)
+...|+ +++|+..|++..+ .+...|..+..++...|++++|+..|+++++ +.|+ ...|..+..++...|++++
T Consensus 141 l~~~g~d~~eAl~~~~~al~l~P~~~~a~~~~g~~~~~~g~~~eAl~~~~kal~--ldP~~~~a~~~lg~~~~~~g~~~e 218 (382)
T 2h6f_A 141 LKSLQKDLHEEMNYITAIIEEQPKNYQVWHHRRVLVEWLRDPSQELEFIADILN--QDAKNYHAWQHRQWVIQEFKLWDN 218 (382)
T ss_dssp HHHTTCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCCTT
T ss_pred HHHcccCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCccCHHHHHHHHHHHHHcCChHH
Confidence 888896 9999999998773 4678999999999999999999999999999 5664 4589999999999999999
Q ss_pred HHHHHHHhHHhhCCCCC-chHHHHHHHHHHh-cCChHHH-----HHHHHhCC-CCC-CHHHHHHHHHHHHhhC--ChHHH
Q 047767 537 GQLVFNSMKSVYGIDAD-RQHYSCMIDMLGR-AGILDKA-----EELLQQTP-GGG-DCMMWSSLLRSCRVHG--NEIIG 605 (666)
Q Consensus 537 a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~-~g~~~~A-----~~~~~~~~-~~~-~~~~~~~l~~~~~~~~--~~~~a 605 (666)
|+..++++.+. .|+ ...|+.+..+|.+ .|..++| ++.+++.. ..| +...|..+...+...| ++++|
T Consensus 219 Al~~~~~al~l---~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l~P~~~~a~~~l~~ll~~~g~~~~~~a 295 (382)
T 2h6f_A 219 ELQYVDQLLKE---DVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKLVPHNESAWNYLKGILQDRGLSKYPNL 295 (382)
T ss_dssp HHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHTTTCGGGCHHH
T ss_pred HHHHHHHHHHh---CCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHccCccchHHH
Confidence 99999999975 565 8889999999999 6665888 46776654 455 7789999999988888 68999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhcC--------C-chHHHHHHHHH-Hh
Q 047767 606 RRVANILMELEPVDFAVYSQVSNFYSEIG--------E-FEVSMQIRETA-LA 648 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~g--------~-~~~A~~~~~~~-~~ 648 (666)
++.++++ +.+|+++.++..|+.+|.+.| + +++|+++++++ .+
T Consensus 296 ~~~~~~~-~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~ 347 (382)
T 2h6f_A 296 LNQLLDL-QPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKE 347 (382)
T ss_dssp HHHHHHH-TTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHh-ccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHH
Confidence 9999998 999999999999999999875 2 58999999988 44
No 51
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.49 E-value=9.1e-13 Score=124.37 Aligned_cols=228 Identities=10% Similarity=0.011 Sum_probs=179.8
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 047767 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461 (666)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 461 (666)
.+......+...|++++|+..|++..+.. |+ +...+..+...
T Consensus 5 ~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--p~------------------------------------~~~~~~~l~~~ 46 (272)
T 3u4t_A 5 VEFRYADFLFKNNNYAEAIEVFNKLEAKK--YN------------------------------------SPYIYNRRAVC 46 (272)
T ss_dssp CHHHHHHHHHTTTCHHHHHHHHHHHHHTT--CC------------------------------------CSTTHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CC------------------------------------cHHHHHHHHHH
Confidence 34556677888888888888888887642 22 22344556667
Q ss_pred HHhhCCHHHHHHHhccCCC--CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcH
Q 047767 462 YSRCGHIELSHQVFEKIPS--PN----VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMV 534 (666)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~ 534 (666)
|...|++++|...|++..+ ++ ...|..+...+...|++++|+..+++..+. .| +...+..+...+...|++
T Consensus 47 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~l~~~~~~~~~~ 124 (272)
T 3u4t_A 47 YYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDR--DTTRLDMYGQIGSYFYNKGNF 124 (272)
T ss_dssp HHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCTHHHHHHHHHHHHTTCH
T ss_pred HHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhc--CcccHHHHHHHHHHHHHccCH
Confidence 8889999999998887654 22 335888999999999999999999999984 44 445888999999999999
Q ss_pred HHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCC---hHHHHHH
Q 047767 535 KEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGN---EIIGRRV 608 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~---~~~a~~~ 608 (666)
++|.+.+++..+. .|+ ...+..+...+...+++++|++.++++. ..| +...+..+...+...|+ +++|...
T Consensus 125 ~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~~A~~~ 201 (272)
T 3u4t_A 125 PLAIQYMEKQIRP---TTTDPKVFYELGQAYYYNKEYVKADSSFVKVLELKPNIYIGYLWRARANAAQDPDTKQGLAKPY 201 (272)
T ss_dssp HHHHHHHGGGCCS---SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHSTTCSSCTTHHH
T ss_pred HHHHHHHHHHhhc---CCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHHHcCcchhhHHHHHH
Confidence 9999999999853 555 7777788834444569999999999765 344 57788888888888888 8889999
Q ss_pred HHHHHhcC---CCC-----cchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 609 ANILMELE---PVD-----FAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 609 ~~~~~~~~---p~~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
++++++.. |+. ..+|..++.+|...|++++|.+.++++.+....
T Consensus 202 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~ 253 (272)
T 3u4t_A 202 YEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILALDPT 253 (272)
T ss_dssp HHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCcc
Confidence 99999865 442 257889999999999999999999999875543
No 52
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.49 E-value=3.7e-12 Score=118.63 Aligned_cols=203 Identities=14% Similarity=0.057 Sum_probs=164.5
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 047767 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461 (666)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 461 (666)
.|..+...+...|++++|...|+++.+.. | .+...+..+...
T Consensus 39 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~------------------------------------~~~~~~~~la~~ 80 (252)
T 2ho1_A 39 AYIQLGLGYLQRGNTEQAKVPLRKALEID--P------------------------------------SSADAHAALAVV 80 (252)
T ss_dssp HHHHHHHHHHHTTCTGGGHHHHHHHHHHC--T------------------------------------TCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHhcC--C------------------------------------ChHHHHHHHHHH
Confidence 45666777788888888888888876542 2 233445556677
Q ss_pred HHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHH
Q 047767 462 YSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEG 537 (666)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a 537 (666)
+...|++++|.+.|++..+ .+...+..+...+...|++++|..+++++.+.+..|+. ..+..+...+...|++++|
T Consensus 81 ~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 160 (252)
T 2ho1_A 81 FQTEMEPKLADEEYRKALASDSRNARVLNNYGGFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQA 160 (252)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHH
Confidence 8888999999998887653 46778888999999999999999999999874455654 4788888899999999999
Q ss_pred HHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CC-CCHHHHHHHHHHHHhhCChHHHHHHHHHHHhc
Q 047767 538 QLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GG-GDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615 (666)
Q Consensus 538 ~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 615 (666)
.+.++++.+. . +.+...+..++..|...|++++|...++++. .. .+...+..+...+...|+.++|.+.++++.+.
T Consensus 161 ~~~~~~~~~~-~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~ 238 (252)
T 2ho1_A 161 KEYFEKSLRL-N-RNQPSVALEMADLLYKEREYVPARQYYDLFAQGGGQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL 238 (252)
T ss_dssp HHHHHHHHHH-C-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhc-C-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH
Confidence 9999999876 2 2347888999999999999999999998764 33 36778888888899999999999999999999
Q ss_pred CCCCcchHH
Q 047767 616 EPVDFAVYS 624 (666)
Q Consensus 616 ~p~~~~~~~ 624 (666)
.|+++....
T Consensus 239 ~p~~~~~~~ 247 (252)
T 2ho1_A 239 YPGSLEYQE 247 (252)
T ss_dssp CTTSHHHHH
T ss_pred CCCCHHHHH
Confidence 999876554
No 53
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.49 E-value=3.8e-13 Score=131.81 Aligned_cols=243 Identities=8% Similarity=-0.022 Sum_probs=189.7
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCC---CCcccHHHHHHHHHhcCC-hhHHHHHHHHHHHcCCCCCHHHHHHHhc
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPG---RSLECCNSLMTSLLHSGN-IKDAVEMFGFMVDEGIGLDEVTLSTTLK 423 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~li~~~~~~~~-~~~a~~~~~~m~~~~~~p~~~~~~~ll~ 423 (666)
...++..+..++...|++++|+..++++.. .+...|+.+...+...|+ +++|+..|++.... .|+
T Consensus 96 ~~~a~~~lg~~~~~~g~~~~Al~~~~~al~l~P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l--~P~--------- 164 (382)
T 2h6f_A 96 FRDVYDYFRAVLQRDERSERAFKLTRDAIELNAANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE--QPK--------- 164 (382)
T ss_dssp HHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH--CTT---------
T ss_pred hHHHHHHHHHHHHHCCChHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH--CCC---------
Confidence 455666677777777777777777776543 245577778888888886 99999998888764 222
Q ss_pred hhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChh
Q 047767 424 ALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGR 500 (666)
Q Consensus 424 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~ 500 (666)
+...|..+..++...|++++|+..|+++.+ .+...|..+..++...|+++
T Consensus 165 ---------------------------~~~a~~~~g~~~~~~g~~~eAl~~~~kal~ldP~~~~a~~~lg~~~~~~g~~~ 217 (382)
T 2h6f_A 165 ---------------------------NYQVWHHRRVLVEWLRDPSQELEFIADILNQDAKNYHAWQHRQWVIQEFKLWD 217 (382)
T ss_dssp ---------------------------CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCCT
T ss_pred ---------------------------CHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCccCHHHHHHHHHHHHHcCChH
Confidence 344455566667778888888888887763 56788999999999999999
Q ss_pred HHHHHHHHHHHcCCCCC-HHHHHHHHHHhcC-CCcHHHH-----HHHHHHhHHhhCCCCC-chHHHHHHHHHHhcC--Ch
Q 047767 501 EALDMLEVMIQRGLIPD-KVTFLCVLAGCNH-SGMVKEG-----QLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAG--IL 570 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~-~g~~~~a-----~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g--~~ 570 (666)
+|+..++++++ +.|+ ...|+.+..++.. .|..++| ++.+++.... .|+ ...|..+..+|...| ++
T Consensus 218 eAl~~~~~al~--l~P~~~~a~~~lg~~l~~l~~~~~eA~~~~el~~~~~Al~l---~P~~~~a~~~l~~ll~~~g~~~~ 292 (382)
T 2h6f_A 218 NELQYVDQLLK--EDVRNNSVWNQRYFVISNTTGYNDRAVLEREVQYTLEMIKL---VPHNESAWNYLKGILQDRGLSKY 292 (382)
T ss_dssp THHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCSCSHHHHHHHHHHHHHHHHH---STTCHHHHHHHHHHHTTTCGGGC
T ss_pred HHHHHHHHHHH--hCCCCHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHccCccch
Confidence 99999999999 5564 4578888888888 6665777 5888888865 566 778999999999988 68
Q ss_pred HHHHHHHHhCCCCC-CHHHHHHHHHHHHhhC---------ChHHHHHHHHHH-HhcCCCCcchHHHHHHHHhhc
Q 047767 571 DKAEELLQQTPGGG-DCMMWSSLLRSCRVHG---------NEIIGRRVANIL-MELEPVDFAVYSQVSNFYSEI 633 (666)
Q Consensus 571 ~~A~~~~~~~~~~~-~~~~~~~l~~~~~~~~---------~~~~a~~~~~~~-~~~~p~~~~~~~~l~~~~~~~ 633 (666)
++|++.++++...| +...+..++..|...| ..++|+++++++ .+.+|.....|..++..+..+
T Consensus 293 ~~a~~~~~~~~~~p~~~~al~~La~~~~~~~~~~~~~~~~~~~~A~~~~~~l~~~~DP~r~~~w~~~~~~l~~~ 366 (382)
T 2h6f_A 293 PNLLNQLLDLQPSHSSPYLIAFLVDIYEDMLENQCDNKEDILNKALELCEILAKEKDTIRKEYWRYIGRSLQSK 366 (382)
T ss_dssp HHHHHHHHHHTTTCCCHHHHHHHHHHHHHHHHTTCSSHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccCCCCHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHH
Confidence 99999998875455 5678888888888764 258999999999 999999999999888877654
No 54
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.46 E-value=3.6e-13 Score=137.49 Aligned_cols=191 Identities=8% Similarity=-0.055 Sum_probs=170.5
Q ss_pred CchHHHHHHHHHHHhhCCH-HHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHH
Q 047767 450 SNIAVSCSLMDAYSRCGHI-ELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVL 525 (666)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~-~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~ 525 (666)
.+...+..+...+...|++ ++|.+.|++..+ .+...|..+..+|...|++++|...|++..+ +.|+...+..+.
T Consensus 100 ~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~lg 177 (474)
T 4abn_A 100 VEAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEPELVEAWNQLGEVYWKKGDVTSAHTCFSGALT--HCKNKVSLQNLS 177 (474)
T ss_dssp CCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCCCHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCHHHHHHHH
Confidence 4566777788888899999 999999988763 4578999999999999999999999999998 678878899999
Q ss_pred HHhcCC---------CcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhc--------CChHHHHHHHHhCC-CCC--
Q 047767 526 AGCNHS---------GMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRA--------GILDKAEELLQQTP-GGG-- 584 (666)
Q Consensus 526 ~~~~~~---------g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~--------g~~~~A~~~~~~~~-~~~-- 584 (666)
..+... |++++|.+.++++.+. .|+ ...|..+..+|... |++++|++.|++.. ..|
T Consensus 178 ~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~ 254 (474)
T 4abn_A 178 MVLRQLQTDSGDEHSRHVMDSVRQAKLAVQM---DVLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVDRKA 254 (474)
T ss_dssp HHHTTCCCSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHCGGG
T ss_pred HHHHHhccCChhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhCCCc
Confidence 999999 9999999999999975 455 88899999999999 99999999999765 344
Q ss_pred --CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHH
Q 047767 585 --DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRET 645 (666)
Q Consensus 585 --~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 645 (666)
+...|..+...+...|++++|++.|+++++.+|+++.++..++.++...|++++|++.+++
T Consensus 255 ~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 255 SSNPDLHLNRATLHKYEESYGEALEGFSQAAALDPAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred ccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 7789999999999999999999999999999999999999999999999999999986554
No 55
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.46 E-value=7e-12 Score=114.33 Aligned_cols=206 Identities=9% Similarity=-0.009 Sum_probs=164.4
Q ss_pred cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHH
Q 047767 380 LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLM 459 (666)
Q Consensus 380 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 459 (666)
+..+..+...+...|++++|+..|+++.+.. | .+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~------------------------------------~~~~~~~~l~ 49 (225)
T 2vq2_A 8 SNIKTQLAMEYMRGQDYRQATASIEDALKSD--P------------------------------------KNELAWLVRA 49 (225)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--T------------------------------------TCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--c------------------------------------cchHHHHHHH
Confidence 3345667777788888888888888776642 2 1233455566
Q ss_pred HHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHc-CChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcH
Q 047767 460 DAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRN-GMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMV 534 (666)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~-~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~ 534 (666)
..+...|++++|...|++..+ .+...+..+...+... |++++|...++++.+.+..|+. ..+..+...+...|++
T Consensus 50 ~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 129 (225)
T 2vq2_A 50 EIYQYLKVNDKAQESFRQALSIKPDSAEINNNYGWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQF 129 (225)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCChHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCH
Confidence 678888888888888887652 4677888899999999 9999999999999884444553 4788888899999999
Q ss_pred HHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC--CC-CCHHHHHHHHHHHHhhCChHHHHHHHH
Q 047767 535 KEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP--GG-GDCMMWSSLLRSCRVHGNEIIGRRVAN 610 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~-~~~~~~~~l~~~~~~~~~~~~a~~~~~ 610 (666)
++|...++++.+. .|+ ...+..++.+|.+.|++++|.+.++++. .+ .+...+..+...+...|+.+.|...++
T Consensus 130 ~~A~~~~~~~~~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~ 206 (225)
T 2vq2_A 130 GLAEAYLKRSLAA---QPQFPPAFKELARTKMLAGQLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEA 206 (225)
T ss_dssp HHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHH
Confidence 9999999999875 344 7888999999999999999999998765 23 466677777777889999999999999
Q ss_pred HHHhcCCCCcchHHHH
Q 047767 611 ILMELEPVDFAVYSQV 626 (666)
Q Consensus 611 ~~~~~~p~~~~~~~~l 626 (666)
.+.+..|+++.....+
T Consensus 207 ~~~~~~p~~~~~~~~l 222 (225)
T 2vq2_A 207 QLQANFPYSEELQTVL 222 (225)
T ss_dssp HHHHHCTTCHHHHHHH
T ss_pred HHHHhCCCCHHHHHHh
Confidence 9999999987766544
No 56
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.45 E-value=6.1e-12 Score=118.71 Aligned_cols=226 Identities=12% Similarity=-0.038 Sum_probs=175.7
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCC-CcccHHHHHHHHHh----cCChhHHHHHHHHHHHcCCCCCHHHHHHHh
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLECCNSLMTSLLH----SGNIKDAVEMFGFMVDEGIGLDEVTLSTTL 422 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~~~~li~~~~~----~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll 422 (666)
++..+..+...|...|++++|...|+....+ +...+..+...|.. .+++++|+..|++..+.+ +
T Consensus 5 ~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~-------- 73 (273)
T 1ouv_A 5 DPKELVGLGAKSYKEKDFTQAKKYFEKACDLKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN---Y-------- 73 (273)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---C--------
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC---C--------
Confidence 5666677777777778888888777765544 44566677777777 888888888888877653 2
Q ss_pred chhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHh----hCCHHHHHHHhccCCC-CCHHHHHHHHHHHHH--
Q 047767 423 KALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSR----CGHIELSHQVFEKIPS-PNVVCFTSIMNGYSR-- 495 (666)
Q Consensus 423 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~-~~~~~~~~li~~~~~-- 495 (666)
...+..+...|.. .+++++|...|++..+ .+...+..+...|..
T Consensus 74 -----------------------------~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a~~~lg~~~~~~~ 124 (273)
T 1ouv_A 74 -----------------------------SNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDLKYAEGCASLGGIYHDGK 124 (273)
T ss_dssp -----------------------------HHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCS
T ss_pred -----------------------------HHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHcCCccHHHHHHHHHHcCC
Confidence 2223334455666 7788888877776653 467778888888888
Q ss_pred --cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcC----CCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh---
Q 047767 496 --NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNH----SGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR--- 566 (666)
Q Consensus 496 --~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~--- 566 (666)
.+++++|+..+++..+.+ +...+..+...+.. .+++++|...+++..+. + +...+..+..+|..
T Consensus 125 ~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~-~---~~~a~~~lg~~~~~g~~ 197 (273)
T 1ouv_A 125 VVTRDFKKAVEYFTKACDLN---DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDL-K---DSPGCFNAGNMYHHGEG 197 (273)
T ss_dssp SSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT-T---CHHHHHHHHHHHHHTCS
T ss_pred CcccCHHHHHHHHHHHHhcC---cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHC-C---CHHHHHHHHHHHHcCCC
Confidence 899999999999999865 45566667777766 89999999999999875 3 46788889999999
Q ss_pred -cCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCChHHHHHHHHHHHhcCCCCc
Q 047767 567 -AGILDKAEELLQQTPGGGDCMMWSSLLRSCRV----HGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 567 -~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
.+++++|++.+++.....+...+..+...+.. .+++++|.+.++++.+..|+++
T Consensus 198 ~~~~~~~A~~~~~~a~~~~~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~~~~a 256 (273)
T 1ouv_A 198 ATKNFKEALARYSKACELENGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLGAKGA 256 (273)
T ss_dssp SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHTCHHH
T ss_pred CCccHHHHHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcCCHHH
Confidence 99999999999987645567788888888988 8999999999999999998753
No 57
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.45 E-value=2e-12 Score=116.87 Aligned_cols=195 Identities=10% Similarity=-0.029 Sum_probs=124.3
Q ss_pred CchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHH
Q 047767 74 DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVD 153 (666)
Q Consensus 74 ~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~ 153 (666)
+...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|...+++..+.. +.+...+..+..
T Consensus 4 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~ 81 (217)
T 2pl2_A 4 AEQNPLRLGVQLYALGRYDAALTLFERALKEN-PQDPEALYWLARTQLKLGLVNPALENGKTLVART-PRYLGGYMVLSE 81 (217)
T ss_dssp CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHH
Confidence 34455556666666666666666666666543 2345556666666666666666666666666654 334555666666
Q ss_pred HhHhc-----------CChhHHHHhhccCCC--C-CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHH
Q 047767 154 LYMRM-----------GPSVRALDLFDELPE--R-NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVR 219 (666)
Q Consensus 154 ~~~~~-----------g~~~~a~~~~~~~~~--~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~ 219 (666)
.+... |++++|...|+...+ | +...|..+...+...|++++|+..|++..+.. .+...+..+..
T Consensus 82 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~ 159 (217)
T 2pl2_A 82 AYVALYRQAEDRERGKGYLEQALSVLKDAERVNPRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAE 159 (217)
T ss_dssp HHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHH
T ss_pred HHHHhhhhhhhhcccccCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHH
Confidence 66666 667777766665543 3 34567777778888888888888888888776 67777778888
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC
Q 047767 220 GCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP 274 (666)
Q Consensus 220 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~ 274 (666)
++...|++++|...++.+.+.. |.+...+..+...+.+.|++++|...|+...
T Consensus 160 ~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 160 LYLSMGRLDEALAQYAKALEQA--PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 8888888888888888888875 6677777788888888888888877776654
No 58
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.45 E-value=1.5e-12 Score=138.10 Aligned_cols=162 Identities=12% Similarity=0.096 Sum_probs=147.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHH
Q 047767 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSC 559 (666)
Q Consensus 482 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~ 559 (666)
+...|+.|...|.+.|++++|++.|++.++ +.|+. ..+..+..++.+.|++++|++.|++..+. .|+ ...|..
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~--l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l---~P~~~~a~~n 82 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALE--VFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIRI---SPTFADAYSN 82 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHH
Confidence 356788899999999999999999999998 66764 58899999999999999999999999865 676 789999
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCch
Q 047767 560 MIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637 (666)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 637 (666)
+..+|.+.|++++|++.+++.. ..| +...|..++.++...|++++|++.|+++++++|+++.++..|+.+|...|+++
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~~~ 162 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQINPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCDWT 162 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhcccHH
Confidence 9999999999999999999765 455 67899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHh
Q 047767 638 VSMQIRETALA 648 (666)
Q Consensus 638 ~A~~~~~~~~~ 648 (666)
+|.+.++++.+
T Consensus 163 ~A~~~~~kal~ 173 (723)
T 4gyw_A 163 DYDERMKKLVS 173 (723)
T ss_dssp THHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 99999998764
No 59
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.44 E-value=1e-12 Score=132.50 Aligned_cols=197 Identities=14% Similarity=0.031 Sum_probs=152.2
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCC---------CCHHHHHHHHHHHHHcCC-----------------hhHHHHH
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS---------PNVVCFTSIMNGYSRNGM-----------------GREALDM 505 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---------~~~~~~~~li~~~~~~~~-----------------~~~a~~~ 505 (666)
...+..+...|...|++++|...+++..+ .....+..+...|...|+ +++|+..
T Consensus 126 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~ 205 (411)
T 4a1s_A 126 AKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEF 205 (411)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHH
Confidence 45566777888888999998888887653 124467788888899999 8999988
Q ss_pred HHHHHHc----CCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHHHHH
Q 047767 506 LEVMIQR----GLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKAEEL 576 (666)
Q Consensus 506 ~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~ 576 (666)
+++..+. +-.|.. .++..+...+...|++++|...+++..+...-.++ ...+..+..+|...|++++|.+.
T Consensus 206 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 285 (411)
T 4a1s_A 206 YQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEH 285 (411)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHH
Confidence 8876542 222222 36777888899999999999999998765211122 33788899999999999999999
Q ss_pred HHhCC----CCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHhhcCCchHHHHH
Q 047767 577 LQQTP----GGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD------FAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 577 ~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
+++.. ..+ ...++..+...+...|++++|...++++++..+.. ..++..++.+|...|++++|.+.
T Consensus 286 ~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 365 (411)
T 4a1s_A 286 YKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELGDRIGEARACWSLGNAHSAIGGHERALKY 365 (411)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCChHHHHHHHHHHHHHHHHhccHHHHHHH
Confidence 98654 111 25677888888999999999999999999865443 44888999999999999999999
Q ss_pred HHHHHh
Q 047767 643 RETALA 648 (666)
Q Consensus 643 ~~~~~~ 648 (666)
+++..+
T Consensus 366 ~~~al~ 371 (411)
T 4a1s_A 366 AEQHLQ 371 (411)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 998864
No 60
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.43 E-value=1.9e-12 Score=122.36 Aligned_cols=215 Identities=12% Similarity=0.019 Sum_probs=170.5
Q ss_pred ccchhhHHHHHHHHHHhCC---CCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHH
Q 047767 430 SANLGSCRLLHCCAIKSGF---ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREAL 503 (666)
Q Consensus 430 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~ 503 (666)
.++++.|...+..+.+... +.+..++..+...+...|++++|...|++..+ .+...|..+...+...|++++|.
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~ 97 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIRPDMPEVFNYLGIYLTQAGNFDAAY 97 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHccCHHHHH
Confidence 3444555555554444321 12456677788999999999999999998763 46889999999999999999999
Q ss_pred HHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 047767 504 DMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP- 581 (666)
Q Consensus 504 ~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 581 (666)
..++++.+. .| +...+..+...+...|++++|...++++.+. .|+......+...+...|++++|...+++..
T Consensus 98 ~~~~~al~~--~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 172 (275)
T 1xnf_A 98 EAFDSVLEL--DPTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFE 172 (275)
T ss_dssp HHHHHHHHH--CTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHH
T ss_pred HHHHHHHhc--CccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHh
Confidence 999999984 45 4568889999999999999999999999875 5765555556666678899999999996544
Q ss_pred CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC----CcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 582 GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV----DFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 582 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~----~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
..| +...+ .++..+...++.++|...++++++..|. ++.++..++.+|...|++++|...++++.+..
T Consensus 173 ~~~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 245 (275)
T 1xnf_A 173 KSDKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVANN 245 (275)
T ss_dssp HSCCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred cCCcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC
Confidence 233 33333 4667778888999999999999887764 36889999999999999999999999998764
No 61
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.42 E-value=2.4e-12 Score=129.47 Aligned_cols=266 Identities=14% Similarity=0.076 Sum_probs=143.0
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCC---C----cccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHH
Q 047767 349 VHVQSALTDMYGKCNVIESSVAVFESAPGR---S----LECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTT 421 (666)
Q Consensus 349 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~l 421 (666)
...+......+...|++++|...|+++... + ...+..+...+...|++++|...+++.....
T Consensus 9 ~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~----------- 77 (406)
T 3sf4_A 9 CLELALEGERLCKSGDCRAGVSFFEAAVQVGTEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA----------- 77 (406)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-----------
Confidence 344455566666666666666666554321 1 1244555566666666666666666654321
Q ss_pred hchhhhhcccchhhHHHHHHHHHHhCCC-CchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----CC----HHHHHHHHH
Q 047767 422 LKALSVSASANLGSCRLLHCCAIKSGFE-SNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----PN----VVCFTSIMN 491 (666)
Q Consensus 422 l~~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~ 491 (666)
...+.. ....++..+...|...|++++|...+++..+ ++ ..++..+..
T Consensus 78 ----------------------~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~ 135 (406)
T 3sf4_A 78 ----------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGN 135 (406)
T ss_dssp ----------------------HHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred ----------------------HhccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHH
Confidence 000111 1133344455556666666666666655442 11 235555666
Q ss_pred HHHHcCC--------------------hhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHH
Q 047767 492 GYSRNGM--------------------GREALDMLEVMIQR----GLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 492 ~~~~~~~--------------------~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 546 (666)
.|...|+ +++|...+++..+. +..|.. .++..+...+...|++++|...+++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 215 (406)
T 3sf4_A 136 VYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLL 215 (406)
T ss_dssp HHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHH
T ss_pred HHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 6666666 66666666554431 111111 2455555666666666666666666654
Q ss_pred hhCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 547 VYGIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP----GGGD----CMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 547 ~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
...-.++ ..++..++..|...|++++|...+++.. ..++ ..++..+...+...|++++|...++++++
T Consensus 216 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 295 (406)
T 3sf4_A 216 IAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLA 295 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 3111122 2355666666666666666666665432 1111 34555566666666666666666666666
Q ss_pred cCCCC------cchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 615 LEPVD------FAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 615 ~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
..+.. +.++..++.+|...|++++|.+.+++..
T Consensus 296 ~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 334 (406)
T 3sf4_A 296 IAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHL 334 (406)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 43332 3456666666666666666666666554
No 62
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.41 E-value=4.9e-12 Score=123.41 Aligned_cols=199 Identities=15% Similarity=0.088 Sum_probs=154.1
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCC-----CC----HHHHHHHHHHHHHcCC--------------------hhHH
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS-----PN----VVCFTSIMNGYSRNGM--------------------GREA 502 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~--------------------~~~a 502 (666)
..++..+...+...|++++|...+++..+ ++ ..++..+...+...|+ +++|
T Consensus 83 ~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A 162 (338)
T 3ro2_A 83 AKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAA 162 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHH
Confidence 45566778888899999999988887653 22 3477888888999999 8999
Q ss_pred HHHHHHHHHc----CCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHH
Q 047767 503 LDMLEVMIQR----GLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKA 573 (666)
Q Consensus 503 ~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A 573 (666)
...+++..+. +..|.. ..+..+...+...|++++|...+++..+...-.++ ..++..++..|...|++++|
T Consensus 163 ~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A 242 (338)
T 3ro2_A 163 VDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETA 242 (338)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHH
Confidence 9988886542 212222 36777888899999999999999988754211122 34788899999999999999
Q ss_pred HHHHHhCC----CCCC----HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHhhcCCchHH
Q 047767 574 EELLQQTP----GGGD----CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD------FAVYSQVSNFYSEIGEFEVS 639 (666)
Q Consensus 574 ~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A 639 (666)
.+.+++.. ..++ ..++..+...+...|++++|...++++++..|.. ..++..++.+|...|++++|
T Consensus 243 ~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A 322 (338)
T 3ro2_A 243 SEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQA 322 (338)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHH
Confidence 99998654 1122 5577788888999999999999999999865543 44788999999999999999
Q ss_pred HHHHHHHHhCC
Q 047767 640 MQIRETALARK 650 (666)
Q Consensus 640 ~~~~~~~~~~~ 650 (666)
.+.++++.+..
T Consensus 323 ~~~~~~a~~~~ 333 (338)
T 3ro2_A 323 MHFAEKHLEIS 333 (338)
T ss_dssp HHHHHHHHHC-
T ss_pred HHHHHHHHHHH
Confidence 99999987643
No 63
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.39 E-value=1.9e-12 Score=130.13 Aligned_cols=300 Identities=13% Similarity=0.009 Sum_probs=194.3
Q ss_pred ChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCCh-----hhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhH
Q 047767 277 DVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSI-----RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHV 351 (666)
Q Consensus 277 ~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 351 (666)
....+......+...|++++|...|++..+.+ |+. ..+..+...+...|+++.|...++.+........+..
T Consensus 8 ~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~- 84 (406)
T 3sf4_A 8 SCLELALEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL- 84 (406)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHH-
T ss_pred HHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccH-
Confidence 34445566677778888888888888877652 321 2344445555555666655555555433210000000
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCC-CCHHHHHHHhchhhhhcc
Q 047767 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIG-LDEVTLSTTLKALSVSAS 430 (666)
Q Consensus 352 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~-p~~~~~~~ll~~~~~~~~ 430 (666)
....++..+...+...|++++|+..+++..+.... ++..
T Consensus 85 --------------------------~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~-------------- 124 (406)
T 3sf4_A 85 --------------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKV-------------- 124 (406)
T ss_dssp --------------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH--------------
T ss_pred --------------------------HHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhccccc--------------
Confidence 01224556667777778888888777776542100 0100
Q ss_pred cchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCC--------------------HHHHHHHhccCCC-----C----
Q 047767 431 ANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGH--------------------IELSHQVFEKIPS-----P---- 481 (666)
Q Consensus 431 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~---- 481 (666)
....++..+...|...|+ +++|...+++..+ +
T Consensus 125 -------------------~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~ 185 (406)
T 3sf4_A 125 -------------------GEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAA 185 (406)
T ss_dssp -------------------HHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred -------------------chHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHH
Confidence 012234445555566666 6666666554431 1
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC-CCCC----HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC---
Q 047767 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRG-LIPD----KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD--- 553 (666)
Q Consensus 482 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--- 553 (666)
....+..+...+...|++++|...+++..+.. -.++ ..++..+...+...|++++|...+++......-.++
T Consensus 186 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 265 (406)
T 3sf4_A 186 QGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAV 265 (406)
T ss_dssp HHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchH
Confidence 23467788888999999999999998887521 0122 126778888899999999999999988754211122
Q ss_pred -chHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC------C
Q 047767 554 -RQHYSCMIDMLGRAGILDKAEELLQQTP----GGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP------V 618 (666)
Q Consensus 554 -~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p------~ 618 (666)
..++..++..|...|++++|.+.+++.. ..+ ...++..+...+...|++++|.+.++++++..+ .
T Consensus 266 ~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 345 (406)
T 3sf4_A 266 EAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSG 345 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcc
Confidence 5678889999999999999999988654 112 255778888899999999999999999988633 3
Q ss_pred CcchHHHHHHHHhhcCCchH
Q 047767 619 DFAVYSQVSNFYSEIGEFEV 638 (666)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~ 638 (666)
...++..++.++...|+...
T Consensus 346 ~~~~~~~l~~~~~~~g~~~~ 365 (406)
T 3sf4_A 346 ELTARLNLSDLQMVLGLSYS 365 (406)
T ss_dssp HHHHHHHHHHHHHHHHTTSC
T ss_pred hhHHHHHHHHHHHHhhHhHH
Confidence 35678889999999887643
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.39 E-value=7.3e-12 Score=110.14 Aligned_cols=166 Identities=12% Similarity=0.054 Sum_probs=144.8
Q ss_pred CchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHH
Q 047767 450 SNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVL 525 (666)
Q Consensus 450 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~ 525 (666)
.+..+|..+...|...|++++|.+.|++..+ .+...|..+..+|.+.|++++|+..++..... .|+ ...+..+.
T Consensus 3 e~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~~ 80 (184)
T 3vtx_A 3 ETTTIYMDIGDKKRTKGDFDGAIRAYKKVLKADPNNVETLLKLGKTYMDIGLPNDAIESLKKFVVL--DTTSAEAYYILG 80 (184)
T ss_dssp -CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCCCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CchhHHHHHHHH
Confidence 3567888899999999999999999998763 46788999999999999999999999999884 444 45677777
Q ss_pred HHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCh
Q 047767 526 AGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNE 602 (666)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~ 602 (666)
..+...++++.|.+.+.+.... .|+ ...+..+..+|.+.|++++|++.+++.. ..| +...|..++..+...|++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~---~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIAL---NTVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIKPGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHcCCHHHHHHHHHHHHHh---CccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhcchhhhHHHHHHHHHHHCCCH
Confidence 8889999999999999999875 444 7889999999999999999999999765 344 778999999999999999
Q ss_pred HHHHHHHHHHHhcCCCCc
Q 047767 603 IIGRRVANILMELEPVDF 620 (666)
Q Consensus 603 ~~a~~~~~~~~~~~p~~~ 620 (666)
++|++.++++++.+|+++
T Consensus 158 ~~A~~~~~~al~~~p~~a 175 (184)
T 3vtx_A 158 DEAVKYFKKALEKEEKKA 175 (184)
T ss_dssp HHHHHHHHHHHHTTHHHH
T ss_pred HHHHHHHHHHHhCCccCH
Confidence 999999999999999764
No 65
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=7e-12 Score=110.36 Aligned_cols=163 Identities=14% Similarity=0.035 Sum_probs=112.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLG 565 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~ 565 (666)
|..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+. .+.+...+..++..|.
T Consensus 11 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~ 87 (186)
T 3as5_A 11 YRDKGISHAKAGRYSQAVMLLEQVYDAD-AFDVDVALHLGIAYVKTGAVDRGTELLERSLAD--APDNVKVATVLGLTYV 87 (186)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTTTCCTT-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHhC-ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCCCHHHHHHHHHHHH
Confidence 4444555555566666666665554421 123345555666666666666666666666554 1223566666777777
Q ss_pred hcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHH
Q 047767 566 RAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIR 643 (666)
Q Consensus 566 ~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~ 643 (666)
..|++++|.+.++++. .+.+...+..++..+...|++++|...++++++..|.++.++..++.++...|++++|.+.+
T Consensus 88 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~ 167 (186)
T 3as5_A 88 QVQKYDLAVPLLIKVAEANPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEALPHF 167 (186)
T ss_dssp HHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHhcCcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHHHHH
Confidence 7777777777776554 23356677778888888889999999999999988888888999999999999999999999
Q ss_pred HHHHhCCC
Q 047767 644 ETALARKL 651 (666)
Q Consensus 644 ~~~~~~~~ 651 (666)
+++.+...
T Consensus 168 ~~~~~~~~ 175 (186)
T 3as5_A 168 KKANELDE 175 (186)
T ss_dssp HHHHHHHH
T ss_pred HHHHHcCC
Confidence 88876543
No 66
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=3.8e-09 Score=110.58 Aligned_cols=225 Identities=11% Similarity=0.001 Sum_probs=161.3
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHH-HHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhc
Q 047767 398 DAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCR-LLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFE 476 (666)
Q Consensus 398 ~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 476 (666)
.+..+|++.... +.-....|.....- +...++.+.|. .+++...... +.+...+-..+....+.|+++.|..+|+
T Consensus 327 Rv~~~Ye~aL~~-~p~~~~lW~~ya~~--~~~~~~~~~a~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iye 402 (679)
T 4e6h_A 327 RMTYVYMQAAQH-VCFAPEIWFNMANY--QGEKNTDSTVITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTIL 402 (679)
T ss_dssp HHHHHHHHHHHH-TTTCHHHHHHHHHH--HHHHSCCTTHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHH-cCCCHHHHHHHHHH--HHhcCcHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 455667777665 23345555555554 55667777886 8888887643 5566677778888888999999999998
Q ss_pred cCCC-------------CC------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHc-C-CCCCHHHHHHHHHHhc
Q 047767 477 KIPS-------------PN------------VVCFTSIMNGYSRNGMGREALDMLEVMIQR-G-LIPDKVTFLCVLAGCN 529 (666)
Q Consensus 477 ~~~~-------------~~------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g-~~p~~~~~~~l~~~~~ 529 (666)
.+.+ |+ ...|...++...+.|+.+.|..+|++.++. + ..+......+.+.-.
T Consensus 403 k~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~- 481 (679)
T 4e6h_A 403 SCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYH- 481 (679)
T ss_dssp HHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHT-
T ss_pred HHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHH-
Confidence 7763 31 236888888888889999999999999885 2 122222333333322
Q ss_pred CCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----CHHHHHHHHHHHHhhCChHH
Q 047767 530 HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG----DCMMWSSLLRSCRVHGNEII 604 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~~~~~~ 604 (666)
..++.+.|.++|+...+.+ +-+...|...++.....|+.+.|..+|++.. ..| ....|...+.--...|+.+.
T Consensus 482 ~~~d~e~Ar~ife~~Lk~~--p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~ 559 (679)
T 4e6h_A 482 ISKDTKTACKVLELGLKYF--ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNS 559 (679)
T ss_dssp TTSCCHHHHHHHHHHHHHH--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHH
T ss_pred hCCCHHHHHHHHHHHHHHC--CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHH
Confidence 2356899999999999873 3346667788898889999999999999865 233 34678888888888999999
Q ss_pred HHHHHHHHHhcCCCCcchHHHHHHHH
Q 047767 605 GRRVANILMELEPVDFAVYSQVSNFY 630 (666)
Q Consensus 605 a~~~~~~~~~~~p~~~~~~~~l~~~~ 630 (666)
+..+.+++.+..|+++ ....++.-|
T Consensus 560 ~~~v~~R~~~~~P~~~-~~~~f~~ry 584 (679)
T 4e6h_A 560 VRTLEKRFFEKFPEVN-KLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHSTTCC-HHHHHHHHT
T ss_pred HHHHHHHHHHhCCCCc-HHHHHHHHh
Confidence 9999999999999864 333334444
No 67
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.36 E-value=1.6e-09 Score=113.44 Aligned_cols=436 Identities=10% Similarity=0.007 Sum_probs=267.4
Q ss_pred CchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCC---hHHHH
Q 047767 191 RPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGS---LIEAK 267 (666)
Q Consensus 191 ~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---~~~A~ 267 (666)
...+.+..|++....+ +-|..+|..++..+...+.++.+..+|+.++.. +|.....|...+..-.+.++ ++.+.
T Consensus 47 ~~~d~i~~lE~~l~~n-p~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~--fP~~~~lW~~Yi~~E~~~~~~~~~~~v~ 123 (679)
T 4e6h_A 47 DESDVIGKLNDMIEEQ-PTDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR--FPLMANIWCMRLSLEFDKMEELDAAVIE 123 (679)
T ss_dssp CCSCHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHTC--CCCHHHHH
T ss_pred CCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHhhCCcchHHHHH
Confidence 3445555555555543 457888989999888888999999999999988 58888888888888888888 88888
Q ss_pred HHhccCCC-----CChhhHHHHHHHHHcCCCh--------HHHHHHHHHhHh-cCC-CCCh-hhHHHHHHHHhc------
Q 047767 268 KSFDFIPV-----DDVISWNSIVSIYADYDLI--------FDALELFFRMQL-CRK-RPSI-RSFVEFLNFASR------ 325 (666)
Q Consensus 268 ~~~~~~~~-----~~~~~~~~li~~~~~~g~~--------~~a~~~~~~m~~-~~~-~p~~-~t~~~ll~~~~~------ 325 (666)
.+|++... +++..|...+.-..+.++. +.+.++|+.... .|. .|+. ..|...+.....
T Consensus 124 ~lfeRal~~~~~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 124 PVLARCLSKELGNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHHHHHTCSSSCCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHHHHHhcCCCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 88877642 6677777766654444432 223356665443 355 4433 344444443321
Q ss_pred ---cCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHH
Q 047767 326 ---TGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM 402 (666)
Q Consensus 326 ---~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~ 402 (666)
.++.+.+..+++.+....... ...++......-... +..+...++.- ...+++.|...
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~-~~~~w~~Y~~fe~~~----------------~~~~a~~~~~e--~~~~y~~Ar~~ 264 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDC-LESMWQRYTQWEQDV----------------NQLTARRHIGE--LSAQYMNARSL 264 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSS-HHHHHHHHHHHHHHH----------------CTTTHHHHHHH--HHHHHHHHHHH
T ss_pred HHHHhHHHHHHHHHHHHHhCccHH-HHHHHHHHHHHHHhc----------------CcchHHHHHHH--hhHHHHHHHHH
Confidence 233455666666665321111 112222111111000 00000111110 11233344444
Q ss_pred HHHHHHc--CCC---------------C-----CH---HHHHHHhchhhhhccc-------chhhHHHHHHHHHHhCCCC
Q 047767 403 FGFMVDE--GIG---------------L-----DE---VTLSTTLKALSVSASA-------NLGSCRLLHCCAIKSGFES 450 (666)
Q Consensus 403 ~~~m~~~--~~~---------------p-----~~---~~~~~ll~~~~~~~~~-------~~~~a~~~~~~~~~~~~~~ 450 (666)
+.++... ++. | +. ..|...+.- ....+ ..++...+++.+... ++.
T Consensus 265 ~~e~~~~~~~l~r~~p~~~~~~~~~~~p~~~~~~~~ql~lW~~yi~f--Ek~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~ 341 (679)
T 4e6h_A 265 YQDWLNITKGLKRNLPITLNQATESNLPKPNEYDVQQLLIWLEWIRW--ESDNKLELSDDLHKARMTYVYMQAAQH-VCF 341 (679)
T ss_dssp HHHHHHHTTTCCCCCCSSSTTCCTTTSCCTTCCCHHHHHHHHHHHHH--HHTCTTCCCHHHHHHHHHHHHHHHHHH-TTT
T ss_pred HHHHHHHHHhHhhccccccccchhccCCCCchhHHHHHHHHHHHHHH--HHhCCccccchhhHHHHHHHHHHHHHH-cCC
Confidence 4443221 110 1 00 112222221 11111 122344556666554 344
Q ss_pred chHHHHHHHHHHHhhCCHHHHH-HHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---------CCCC
Q 047767 451 NIAVSCSLMDAYSRCGHIELSH-QVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRG---------LIPD 517 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~-~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---------~~p~ 517 (666)
...+|-..+..+...|+.++|. .+|+.... .+...|-..+....+.|++++|.++|+++.+.. -.|+
T Consensus 342 ~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~ 421 (679)
T 4e6h_A 342 APEIWFNMANYQGEKNTDSTVITKYLKLGQQCIPNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPT 421 (679)
T ss_dssp CHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTT
T ss_pred CHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCc
Confidence 6777777777788889888886 88887663 456667778888889999999999999988631 0142
Q ss_pred ------------HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhc-CChHHHHHHHHhCC--C
Q 047767 518 ------------KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA-GILDKAEELLQQTP--G 582 (666)
Q Consensus 518 ------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~--~ 582 (666)
...|...+....+.|+.+.|..+|+++.+. .-.+....|...+..-.+. ++++.|.++|+... .
T Consensus 422 ~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~-~~~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~~ 500 (679)
T 4e6h_A 422 NESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRL-KKLVTPDIYLENAYIEYHISKDTKTACKVLELGLKYF 500 (679)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHT-GGGSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHH
T ss_pred chhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-cCCCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHC
Confidence 235777777777888999999999999864 1122344554444444444 45899999998765 2
Q ss_pred CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC---CcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 583 GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV---DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~---~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
+.+...|...+......|+.+.|..+|++++...|+ ....|...+..-...|+.+.+.++.+++.+.-.+
T Consensus 501 p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~P~ 573 (679)
T 4e6h_A 501 ATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKFPE 573 (679)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHSTT
T ss_pred CCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC
Confidence 336667778888778889999999999999998873 4456777888888899999999999999876543
No 68
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.35 E-value=2e-11 Score=111.59 Aligned_cols=167 Identities=8% Similarity=-0.053 Sum_probs=105.3
Q ss_pred CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHH
Q 047767 482 NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCM 560 (666)
Q Consensus 482 ~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l 560 (666)
|+..+......+...|++++|+..|++..+..-.++...+..+..++...|++++|++.+++..+. .|+ ...+..+
T Consensus 6 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~l 82 (228)
T 4i17_A 6 DPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKK---NYNLANAYIGK 82 (228)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT---TCSHHHHHHHH
T ss_pred CHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHh---CcchHHHHHHH
Confidence 344555556666666666666666666666432245555555666666666666666666666643 444 5556666
Q ss_pred HHHHHhcCChHHHHHHHHhCC-CCC-CH-------HHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 047767 561 IDMLGRAGILDKAEELLQQTP-GGG-DC-------MMWSSLLRSCRVHGNEIIGRRVANILMELEPV--DFAVYSQVSNF 629 (666)
Q Consensus 561 ~~~~~~~g~~~~A~~~~~~~~-~~~-~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 629 (666)
..+|...|++++|++.+++.. ..| +. ..|..+...+...|++++|++.++++++.+|+ ++.++..++.+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~ 162 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAVPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGVL 162 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHHH
Confidence 666666666666666666543 223 33 34555666666667777777777777777776 66666677777
Q ss_pred HhhcCCc---------------------------hHHHHHHHHHHhCCC
Q 047767 630 YSEIGEF---------------------------EVSMQIRETALARKL 651 (666)
Q Consensus 630 ~~~~g~~---------------------------~~A~~~~~~~~~~~~ 651 (666)
|...|+. ++|+..+++..+...
T Consensus 163 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p 211 (228)
T 4i17_A 163 FYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSP 211 (228)
T ss_dssp HHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence 6666666 899999998887544
No 69
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.35 E-value=7.5e-12 Score=120.63 Aligned_cols=223 Identities=12% Similarity=0.096 Sum_probs=114.0
Q ss_pred hhcccchhhHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----------CCHHHHHH
Q 047767 427 VSASANLGSCRLLHCCAIKS-------GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----------PNVVCFTS 488 (666)
Q Consensus 427 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~ 488 (666)
+...|+++.|..++..+.+. ..+.....+..+...|...|++++|...+++..+ .....+..
T Consensus 37 ~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 116 (311)
T 3nf1_A 37 YASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKDHPAVAATLNN 116 (311)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHH
Confidence 55556666666665555442 2233344455555556666666666555554431 11334555
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc------CCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhh-----CCCCC-ch
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQR------GLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVY-----GIDAD-RQ 555 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~ 555 (666)
+...+...|++++|...++++.+. +-.|+. ..+..+...+...|++++|.++++++.... +..|. ..
T Consensus 117 l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~ 196 (311)
T 3nf1_A 117 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAK 196 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHH
T ss_pred HHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHH
Confidence 555555666666666666555542 112222 245555555556666666666665554421 00111 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCCC----------CC-C------HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTPG----------GG-D------CMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~~----------~~-~------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
++..++.+|...|++++|.+.++++.. .+ . ...+..+...+...+.+.++...++++....|.
T Consensus 197 ~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~ 276 (311)
T 3nf1_A 197 TKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDSPT 276 (311)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC---------CHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCCch
Confidence 455555566666666666655554320 01 0 111111122223334444455555555556788
Q ss_pred CcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
++.++..++.+|...|++++|.+++++..+.
T Consensus 277 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 277 VTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 8889999999999999999999999988653
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.32 E-value=8.9e-12 Score=127.17 Aligned_cols=178 Identities=10% Similarity=-0.025 Sum_probs=156.5
Q ss_pred HHHHHHHhccCC---CCCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHH
Q 047767 468 IELSHQVFEKIP---SPNVVCFTSIMNGYSRNGMG-REALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFN 542 (666)
Q Consensus 468 ~~~A~~~~~~~~---~~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~ 542 (666)
++++.+.+++.. ..+...+..+..++...|++ ++|+..|++..+ ..|+ ...|..+...+...|++++|.+.|+
T Consensus 84 ~~~al~~l~~~~~~~~~~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~ 161 (474)
T 4abn_A 84 MEKTLQQMEEVLGSAQVEAQALMLKGKALNVTPDYSPEAEVLLSKAVK--LEPELVEAWNQLGEVYWKKGDVTSAHTCFS 161 (474)
T ss_dssp HHHHHHHHHHHHTTCCCCHHHHHHHHHHHTSSSSCCHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhccCchhHHHHHHHHHHHHhccccHHHHHHHHHHHHh--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 455555555443 24778899999999999999 999999999998 4565 5689999999999999999999999
Q ss_pred HhHHhhCCCCCchHHHHHHHHHHhc---------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh--------CChH
Q 047767 543 SMKSVYGIDADRQHYSCMIDMLGRA---------GILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH--------GNEI 603 (666)
Q Consensus 543 ~~~~~~~~~p~~~~~~~l~~~~~~~---------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~--------~~~~ 603 (666)
++.+ +.|+...+..+..+|... |++++|++.+++.. ..| +...|..+..++... |+++
T Consensus 162 ~al~---~~p~~~~~~~lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~~~~g~~~ 238 (474)
T 4abn_A 162 GALT---HCKNKVSLQNLSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMDVLDGRSWYILGNAYLSLYFNTGQNPKISQ 238 (474)
T ss_dssp HHHT---TCCCHHHHHHHHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHh---hCCCHHHHHHHHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHhhccccchHH
Confidence 9985 468889999999999999 99999999999765 344 788999999999998 9999
Q ss_pred HHHHHHHHHHhcCC---CCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 604 IGRRVANILMELEP---VDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 604 ~a~~~~~~~~~~~p---~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+|+..|+++++.+| .++.+|..++.+|...|++++|++.|+++.+..
T Consensus 239 ~A~~~~~~al~~~p~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~ 288 (474)
T 4abn_A 239 QALSAYAQAEKVDRKASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD 288 (474)
T ss_dssp HHHHHHHHHHHHCGGGGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHhCCCcccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC
Confidence 99999999999999 999999999999999999999999999987654
No 71
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.29 E-value=1.4e-10 Score=105.82 Aligned_cols=175 Identities=11% Similarity=-0.023 Sum_probs=120.5
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCC----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHH
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS----PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLA 526 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~ 526 (666)
+..+......+...|++++|...|++..+ ++...+..+..++...|++++|+..+++..+ ..|+.. .+..+..
T Consensus 7 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~l~~ 84 (228)
T 4i17_A 7 PNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIK--KNYNLANAYIGKSA 84 (228)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--TTCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHH--hCcchHHHHHHHHH
Confidence 34555556666777777777777765542 4555666677777777777777777777776 455543 5666667
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCCC-c-------hHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC---HHHHHHHHH
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDAD-R-------QHYSCMIDMLGRAGILDKAEELLQQTP-GGGD---CMMWSSLLR 594 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p~-~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~---~~~~~~l~~ 594 (666)
.+...|++++|.+.+++..+. .|+ . ..|..+...+...|++++|++.++++. ..|+ ...|..+..
T Consensus 85 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 161 (228)
T 4i17_A 85 AYRDMKNNQEYIATLTEGIKA---VPGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVTSKKWKTDALYSLGV 161 (228)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSSCHHHHHHHHHHHHH
T ss_pred HHHHcccHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcCCCcccHHHHHHHHH
Confidence 777777777777777777654 343 3 346666677777777777777777654 3443 356666666
Q ss_pred HHHhhCCh---------------------------HHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 595 SCRVHGNE---------------------------IIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 595 ~~~~~~~~---------------------------~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
.+...|+. ++|+..++++++++|+++.+...+..+..
T Consensus 162 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~l~p~~~~~~~~l~~i~~ 225 (228)
T 4i17_A 162 LFYNNGADVLRKATPLASSNKEKYASEKAKADAAFKKAVDYLGEAVTLSPNRTEIKQMQDQVKA 225 (228)
T ss_dssp HHHHHHHHHHHHHGGGTTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHhcccCCHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCCCHHHHHHHHHHHH
Confidence 66666655 99999999999999999988888877654
No 72
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.29 E-value=1.7e-10 Score=110.67 Aligned_cols=219 Identities=10% Similarity=0.008 Sum_probs=108.1
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHhchhhhh-----cccch-------hhHHHHHHHHHHhCCCCchHHHHHHHHHHHh
Q 047767 397 KDAVEMFGFMVDEGIGLDEVTLSTTLKALSVS-----ASANL-------GSCRLLHCCAIKSGFESNIAVSCSLMDAYSR 464 (666)
Q Consensus 397 ~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~-----~~~~~-------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 464 (666)
++|..+|++..... +-+...|......+... ..|+. +.|..+++...+.-.+.+...+..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 67777787777642 22333444433331000 12443 5555555555542223344455555555555
Q ss_pred hCCHHHHHHHhccCCC--CC-HH-HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh-cCCCcHHHHHH
Q 047767 465 CGHIELSHQVFEKIPS--PN-VV-CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC-NHSGMVKEGQL 539 (666)
Q Consensus 465 ~g~~~~A~~~~~~~~~--~~-~~-~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~-~~~g~~~~a~~ 539 (666)
.|++++|..+|++..+ |+ .. .|..++..+.+.|++++|..+|++..+.. +++...|....... ...|++++|.+
T Consensus 112 ~~~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~~~A~~ 190 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLAIEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFK 190 (308)
T ss_dssp TTCHHHHHHHHHHHHTSSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCHHHHHH
T ss_pred cCCHHHHHHHHHHHHhccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCHHHHHH
Confidence 5666666665555442 21 22 45555555555556666666665555521 11222232222221 12455566666
Q ss_pred HHHHhHHhhCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhCCC----CC--CHHHHHHHHHHHHhhCChHHHHHHHHHH
Q 047767 540 VFNSMKSVYGIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTPG----GG--DCMMWSSLLRSCRVHGNEIIGRRVANIL 612 (666)
Q Consensus 540 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~----~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 612 (666)
+|++..+. .| +...|..++..+.+.|++++|..+|++... .| ....|..++......|+.+.|..+++++
T Consensus 191 ~~~~al~~---~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~a 267 (308)
T 2ond_A 191 IFELGLKK---YGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRR 267 (308)
T ss_dssp HHHHHHHH---HTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred HHHHHHHh---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66555543 22 245555555555555666666655554431 22 2345555555555555666666666666
Q ss_pred HhcCCCCc
Q 047767 613 MELEPVDF 620 (666)
Q Consensus 613 ~~~~p~~~ 620 (666)
++..|+++
T Consensus 268 ~~~~p~~~ 275 (308)
T 2ond_A 268 FTAFREEY 275 (308)
T ss_dssp HHHTTTTT
T ss_pred HHHccccc
Confidence 55555543
No 73
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.29 E-value=1.8e-10 Score=114.62 Aligned_cols=162 Identities=12% Similarity=-0.008 Sum_probs=83.3
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhh---CCCCC-chH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQR----GLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVY---GIDAD-RQH 556 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~ 556 (666)
++.+...|...|++++|+..+++..+. +-.+.. .++..+...+...|++++|.+.+++..+.. +..|. ..+
T Consensus 187 ~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 266 (383)
T 3ulq_A 187 HSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQA 266 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHH
Confidence 334444444445555555544444431 101111 145555555566666666666665554410 11122 455
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC------CCC-CHHHHHHHHHHHHhhCC---hHHHHHHHHHHHhcCCCCcchHHHH
Q 047767 557 YSCMIDMLGRAGILDKAEELLQQTP------GGG-DCMMWSSLLRSCRVHGN---EIIGRRVANILMELEPVDFAVYSQV 626 (666)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~------~~~-~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l 626 (666)
+..++.+|.+.|++++|.+.+++.. ..| ....+..+...+...|+ .++|+..+++. ...|....++..|
T Consensus 267 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~l 345 (383)
T 3ulq_A 267 YFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK-MLYADLEDFAIDV 345 (383)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC-cCHHHHHHHHHHH
Confidence 5666666666666666666665433 111 11223445555556666 55555555554 2223344566677
Q ss_pred HHHHhhcCCchHHHHHHHHHHh
Q 047767 627 SNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 627 ~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
+.+|...|++++|.+.+++..+
T Consensus 346 a~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 346 AKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCHHHHHHHHHHHHH
Confidence 7777777777777777776654
No 74
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.28 E-value=1.8e-11 Score=123.21 Aligned_cols=270 Identities=11% Similarity=0.021 Sum_probs=188.3
Q ss_pred hHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCch----hHHhHHHHHHHhcCChHHHHHHhccCCCC---------Ccc
Q 047767 315 SFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSV----HVQSALTDMYGKCNVIESSVAVFESAPGR---------SLE 381 (666)
Q Consensus 315 t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---------~~~ 381 (666)
.+..+...+...|+++.|...++.+.+.... +. .++..+...|...|++++|...+++.... ...
T Consensus 50 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~~~--~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 50 ELALEGERLCNAGDCRAGVAFFQAAIQAGTE--DLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCCS--CHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhCcHHHHHHHHHHHHHhccc--ChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 3444555677788888888888888886433 33 45667777777777777777776554221 223
Q ss_pred cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHH
Q 047767 382 CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDA 461 (666)
Q Consensus 382 ~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 461 (666)
++..+...|...|++++|...+++..+.. ...+ ..+....++..+...
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~-----------------~~~~---------------~~~~~~~~~~~l~~~ 175 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLA-----------------RQLG---------------DRLSEGRALYNLGNV 175 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHH-----------------HHHT---------------CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHH-----------------HHhh---------------chHHHHHHHHHHHHH
Confidence 45566666677777777777776665420 0000 001123455566777
Q ss_pred HHhhCC-----------------HHHHHHHhccCCC-----C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-
Q 047767 462 YSRCGH-----------------IELSHQVFEKIPS-----P----NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL- 514 (666)
Q Consensus 462 ~~~~g~-----------------~~~A~~~~~~~~~-----~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~- 514 (666)
|...|+ +++|.+.+++..+ . ....+..+...+...|++++|+..+++..+...
T Consensus 176 ~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 255 (411)
T 4a1s_A 176 YHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIARE 255 (411)
T ss_dssp HHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 777788 7888777766542 1 234778888899999999999999998876311
Q ss_pred CCC----HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCCC----
Q 047767 515 IPD----KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTPG---- 582 (666)
Q Consensus 515 ~p~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---- 582 (666)
.++ ...+..+...+...|++++|...+++......-..+ ..++..+..+|...|++++|.+.+++...
T Consensus 256 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 335 (411)
T 4a1s_A 256 FGDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQE 335 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred cCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence 112 126778888999999999999999988765211112 56788899999999999999999987641
Q ss_pred CC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 583 GG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 583 ~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
.+ ...++..+...+...|++++|.+.+++++++.+.
T Consensus 336 ~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~ 375 (411)
T 4a1s_A 336 LGDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQLAXX 375 (411)
T ss_dssp HTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCH
T ss_pred CCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHhh
Confidence 11 2457778888999999999999999999998764
No 75
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.28 E-value=4.2e-11 Score=116.70 Aligned_cols=274 Identities=13% Similarity=-0.005 Sum_probs=167.9
Q ss_pred HHHHHHHcCCChHHHHHHHHHhHhcCCCCCh-----hhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHH
Q 047767 283 SIVSIYADYDLIFDALELFFRMQLCRKRPSI-----RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTD 357 (666)
Q Consensus 283 ~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 357 (666)
.....+...|++++|...|+++.+.. |+. ..+..+...+...|+++.|...++.+.......++..
T Consensus 10 ~~g~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~------- 80 (338)
T 3ro2_A 10 LEGERLCKSGDCRAGVSFFEAAVQVG--TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQL------- 80 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHH-------
T ss_pred HHHHHHHHhccHHHHHHHHHHHHhhC--cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccH-------
Confidence 34455666777777777777766542 221 2344444445555555555555544433210000000
Q ss_pred HHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCC-CCCHHHHHHHhchhhhhcccchhhH
Q 047767 358 MYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGI-GLDEVTLSTTLKALSVSASANLGSC 436 (666)
Q Consensus 358 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~-~p~~~~~~~ll~~~~~~~~~~~~~a 436 (666)
....++..+...+...|++++|...+++..+... .++...
T Consensus 81 --------------------~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~------------------- 121 (338)
T 3ro2_A 81 --------------------GEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVG------------------- 121 (338)
T ss_dssp --------------------HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH-------------------
T ss_pred --------------------HHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchH-------------------
Confidence 0122345566677777777777777776654210 011000
Q ss_pred HHHHHHHHHhCCCCchHHHHHHHHHHHhhCC--------------------HHHHHHHhccCCC-----C----CHHHHH
Q 047767 437 RLLHCCAIKSGFESNIAVSCSLMDAYSRCGH--------------------IELSHQVFEKIPS-----P----NVVCFT 487 (666)
Q Consensus 437 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------------------~~~A~~~~~~~~~-----~----~~~~~~ 487 (666)
...++..+...+...|+ +++|...+++..+ + ....+.
T Consensus 122 --------------~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~ 187 (338)
T 3ro2_A 122 --------------EARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFG 187 (338)
T ss_dssp --------------HHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHH
T ss_pred --------------HHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHH
Confidence 11233344455555555 6666666554431 1 234677
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHH
Q 047767 488 SIMNGYSRNGMGREALDMLEVMIQR----GLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYS 558 (666)
Q Consensus 488 ~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 558 (666)
.+...+...|++++|...+++..+. +..+. ..++..+...+...|++++|...+++......-.++ ..++.
T Consensus 188 ~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 267 (338)
T 3ro2_A 188 NLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCY 267 (338)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHH
Confidence 7888888899999999999887752 11111 126777888888999999999999988754211222 56778
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 559 CMIDMLGRAGILDKAEELLQQTP----GGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
.+...|...|++++|...+++.. ..+ ...++..+...+...|++++|...++++++..+.
T Consensus 268 ~la~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~~ 335 (338)
T 3ro2_A 268 SLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISRE 335 (338)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHC---
T ss_pred HHHHHHHHhcCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHh
Confidence 88999999999999999988654 111 2457778888999999999999999999998764
No 76
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.27 E-value=1.7e-11 Score=122.11 Aligned_cols=293 Identities=8% Similarity=-0.053 Sum_probs=205.0
Q ss_pred HhccCChhhHHHHHHHHHHhC--CCC-CchhHHhHHHHHH--HhcCChHHHH-----------HHhccCCCC--Cccc--
Q 047767 323 ASRTGNVYFGKQIHGYVTKLG--FDH-GSVHVQSALTDMY--GKCNVIESSV-----------AVFESAPGR--SLEC-- 382 (666)
Q Consensus 323 ~~~~~~~~~a~~~~~~~~~~~--~~~-~~~~~~~~l~~~~--~~~~~~~~a~-----------~~~~~~~~~--~~~~-- 382 (666)
+.+.++++.|..+.+.+.+.- .+. .+...|..++..- ...+.++.+. ..++.+... +...
T Consensus 22 ~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~y~~ll~~r~~~~~~~~~~~~~~~~e~~~~~~~~~~~i~~~~~~~~~~l 101 (383)
T 3ulq_A 22 YIRRFSIPDAEYLRREIKQELDQMEEDQDLHLYYSLMEFRHNLMLEYLEPLEKMRIEEQPRLSDLLLEIDKKQARLTGLL 101 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHHHHHGGGGGSCGGGSCCHHHHHHHHHHHTHHHHHHH
T ss_pred HHHHcCHHHHHHHHHHHHHHHHhhccchHHHHHHHHHHHHHHHHHhhcCcccccccccccchhhHHHHHHhcCCCchhHH
Confidence 467899999999999997753 222 1333333333221 1223333333 444433211 1111
Q ss_pred ----HHHHHHHHHhcCChhHHHHHHHHHHHcC-CCCCH----HHHHHHhchhhhhcccchhhHHHHHHHHHHhC--C---
Q 047767 383 ----CNSLMTSLLHSGNIKDAVEMFGFMVDEG-IGLDE----VTLSTTLKALSVSASANLGSCRLLHCCAIKSG--F--- 448 (666)
Q Consensus 383 ----~~~li~~~~~~~~~~~a~~~~~~m~~~~-~~p~~----~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~--~--- 448 (666)
+......+...|++++|+..|++..+.- -.++. .++..+-.. +...|+.+.|...+....+.. .
T Consensus 102 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~--~~~~~~~~~A~~~~~~al~~~~~~~~~ 179 (383)
T 3ulq_A 102 EYYFNFFRGMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSES--YYYMKQTYFSMDYARQAYEIYKEHEAY 179 (383)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHTCSTT
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHH--HHHcCCHHHHHHHHHHHHHHHHhCccc
Confidence 1124456778999999999999998641 12332 233333333 788999999999998876531 1
Q ss_pred -CCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CC
Q 047767 449 -ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----PN----VVCFTSIMNGYSRNGMGREALDMLEVMIQR----GL 514 (666)
Q Consensus 449 -~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~ 514 (666)
+....+++.+...|...|++++|...|++..+ ++ ..++..+...|...|++++|+..+++..+. +.
T Consensus 180 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~ 259 (383)
T 3ulq_A 180 NIRLLQCHSLFATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNI 259 (383)
T ss_dssp HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhcc
Confidence 12345778888999999999999999987763 22 247888999999999999999999998862 33
Q ss_pred CCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC---chHHHHHHHHHHhcCC---hHHHHHHHHhCCCCCC-H
Q 047767 515 IPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD---RQHYSCMIDMLGRAGI---LDKAEELLQQTPGGGD-C 586 (666)
Q Consensus 515 ~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~g~---~~~A~~~~~~~~~~~~-~ 586 (666)
.|+. .++..+...+.+.|++++|...+++..+...-..+ ...+..+...|...|+ +++|+.++++....|+ .
T Consensus 260 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~~~~~~~~ 339 (383)
T 3ulq_A 260 LPSLPQAYFLITQIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESKMLYADLE 339 (383)
T ss_dssp GGGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred chhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCcCHHHHH
Confidence 2444 47888999999999999999999998764211112 3346778889999999 8999999999875553 4
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
..+..+...|...|++++|...++++++...
T Consensus 340 ~~~~~la~~y~~~g~~~~A~~~~~~al~~~~ 370 (383)
T 3ulq_A 340 DFAIDVAKYYHERKNFQKASAYFLKVEQVRQ 370 (383)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH
Confidence 5777888899999999999999999988543
No 77
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.26 E-value=3.8e-10 Score=99.09 Aligned_cols=168 Identities=9% Similarity=-0.038 Sum_probs=143.6
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHh
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGC 528 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~ 528 (666)
...+..+...+...|++++|...|+++.+ .+...+..+...+...|++++|...++++.+.. +.+...+..+...+
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 86 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDADAFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGLTY 86 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHH
Confidence 34456677788999999999999999875 467889999999999999999999999999852 33556888888999
Q ss_pred cCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHH
Q 047767 529 NHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 529 ~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~ 606 (666)
...|++++|.+.++++... .+.+...+..++.+|...|++++|.+.++++. .+.+...+..+...+...|++++|.
T Consensus 87 ~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~ 164 (186)
T 3as5_A 87 VQVQKYDLAVPLLIKVAEA--NPINFNVRFRLGVALDNLGRFDEAIDSFKIALGLRPNEGKVHRAIAFSYEQMGRHEEAL 164 (186)
T ss_dssp HHHTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHhcCHHHHHHHHHHHHhc--CcHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcCccchHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999999875 23457888899999999999999999998765 3336788999999999999999999
Q ss_pred HHHHHHHhcCCCCcch
Q 047767 607 RVANILMELEPVDFAV 622 (666)
Q Consensus 607 ~~~~~~~~~~p~~~~~ 622 (666)
..++++++..|+++..
T Consensus 165 ~~~~~~~~~~~~~~~~ 180 (186)
T 3as5_A 165 PHFKKANELDEGASVE 180 (186)
T ss_dssp HHHHHHHHHHHCCCGG
T ss_pred HHHHHHHHcCCCchhh
Confidence 9999999999887643
No 78
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.24 E-value=1.4e-09 Score=104.22 Aligned_cols=213 Identities=8% Similarity=0.053 Sum_probs=165.7
Q ss_pred hhHHHHHHHHHHhCCCCchHHHHHHHHHHH-------hhCCH-------HHHHHHhccCCC---C-CHHHHHHHHHHHHH
Q 047767 434 GSCRLLHCCAIKSGFESNIAVSCSLMDAYS-------RCGHI-------ELSHQVFEKIPS---P-NVVCFTSIMNGYSR 495 (666)
Q Consensus 434 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~g~~-------~~A~~~~~~~~~---~-~~~~~~~li~~~~~ 495 (666)
++|..+++.+.... +.+...|..++..+. +.|++ ++|..+|++..+ | +...|..++..+.+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~p~~~~~~~~~~~~~~~ 111 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLLKKNMLLYFAYADYEES 111 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhCcccHHHHHHHHHHHHh
Confidence 45666676666643 456667777776665 35775 899999987653 3 56689999999999
Q ss_pred cCChhHHHHHHHHHHHcCCCCCH-H-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHH-hcCChH
Q 047767 496 NGMGREALDMLEVMIQRGLIPDK-V-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLG-RAGILD 571 (666)
Q Consensus 496 ~~~~~~a~~~~~~m~~~g~~p~~-~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~-~~g~~~ 571 (666)
.|++++|..+|++..+ +.|+. . .|..++..+.+.|++++|..+|++..+. .|+ ...|...+.... ..|+++
T Consensus 112 ~~~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~---~p~~~~~~~~~a~~~~~~~~~~~ 186 (308)
T 2ond_A 112 RMKYEKVHSIYNRLLA--IEDIDPTLVYIQYMKFARRAEGIKSGRMIFKKARED---ARTRHHVYVTAALMEYYCSKDKS 186 (308)
T ss_dssp TTCHHHHHHHHHHHHT--SSSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTS---TTCCTHHHHHHHHHHHHTSCCHH
T ss_pred cCCHHHHHHHHHHHHh--ccccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhc---CCCCHHHHHHHHHHHHHHcCCHH
Confidence 9999999999999998 66754 2 7888888888999999999999999854 343 555554444322 379999
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhc---CCC-CcchHHHHHHHHhhcCCchHHHHHHHH
Q 047767 572 KAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMEL---EPV-DFAVYSQVSNFYSEIGEFEVSMQIRET 645 (666)
Q Consensus 572 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~ 645 (666)
+|.++|++.. ..| +...|..++..+...|++++|..+|+++++. .|+ ....|..++..+...|+.++|..++++
T Consensus 187 ~A~~~~~~al~~~p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~~~ 266 (308)
T 2ond_A 187 VAFKIFELGLKKYGDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKR 266 (308)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 9999998765 334 6788888998899999999999999999995 443 566888899999999999999999999
Q ss_pred HHhCCCC
Q 047767 646 ALARKLT 652 (666)
Q Consensus 646 ~~~~~~~ 652 (666)
+.+....
T Consensus 267 a~~~~p~ 273 (308)
T 2ond_A 267 RFTAFRE 273 (308)
T ss_dssp HHHHTTT
T ss_pred HHHHccc
Confidence 8876554
No 79
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.21 E-value=4.5e-09 Score=104.05 Aligned_cols=194 Identities=13% Similarity=0.024 Sum_probs=129.0
Q ss_pred HHHHHHHHHhhCCHHHHHHHhccCCC----------C-CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC--C--CHH
Q 047767 455 SCSLMDAYSRCGHIELSHQVFEKIPS----------P-NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI--P--DKV 519 (666)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~----------~-~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~--p--~~~ 519 (666)
+..+...+...|++++|...+++..+ | ....+..+...+...|++++|...+++..+..-. | ...
T Consensus 96 ~~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 175 (373)
T 1hz4_A 96 LIQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQ 175 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHH
Confidence 44566677778888888877776542 1 1234556777788888888888888887763211 1 123
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHH-----HHHHHHHhcCChHHHHHHHHhCCC-CCC-----HHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYS-----CMIDMLGRAGILDKAEELLQQTPG-GGD-----CMM 588 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~-~~~-----~~~ 588 (666)
++..+...+...|++++|...+++......-......+. ..+..+...|++++|..++++... .|. ...
T Consensus 176 ~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~ 255 (373)
T 1hz4_A 176 CLAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQ 255 (373)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHH
Confidence 566777778888888888888888765411111111222 233447788888888888887652 111 224
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHhcCCCC------cchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 589 WSSLLRSCRVHGNEIIGRRVANILMELEPVD------FAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
+..+...+...|++++|...++++.+..+.. ..++..++.++...|+.++|...+++..+
T Consensus 256 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al~ 321 (373)
T 1hz4_A 256 WRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDALK 321 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence 5666777888888888888888887754321 13666778888888888888888887654
No 80
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.18 E-value=2.1e-10 Score=108.57 Aligned_cols=222 Identities=13% Similarity=0.132 Sum_probs=149.3
Q ss_pred hhcccchhhHHHHHHHHHHh-------CCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----------CCHHHHHH
Q 047767 427 VSASANLGSCRLLHCCAIKS-------GFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----------PNVVCFTS 488 (666)
Q Consensus 427 ~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~ 488 (666)
....++++.|...++...+. ..+....++..+...|...|++++|...+++..+ ....++..
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~ 90 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNN 90 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHH
Confidence 45677888888877766542 2234566778888888889999988888887652 12456778
Q ss_pred HHHHHHHcCChhHHHHHHHHHHHc------CCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhh-----CCCCC-ch
Q 047767 489 IMNGYSRNGMGREALDMLEVMIQR------GLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY-----GIDAD-RQ 555 (666)
Q Consensus 489 li~~~~~~~~~~~a~~~~~~m~~~------g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~p~-~~ 555 (666)
+...|...|++++|...+++..+. .-.|+ ..++..+...+...|++++|...++++.+.. +..|+ ..
T Consensus 91 l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 170 (283)
T 3edt_B 91 LAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAK 170 (283)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHH
Confidence 888888889999999988888763 11233 3367778888888899999999888887541 11222 56
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----------CCC-CHHHHHHHHHHHHhhCC------hHHHHHHHHHHHhcCCC
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTP----------GGG-DCMMWSSLLRSCRVHGN------EIIGRRVANILMELEPV 618 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~----------~~~-~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~p~ 618 (666)
++..++.+|...|++++|.++++++. ..+ ....|..+...+...+. +..+...++......|.
T Consensus 171 ~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 250 (283)
T 3edt_B 171 TKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDSPT 250 (283)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCCHH
Confidence 77788888888999999888887553 122 23344444433333332 33333333333334466
Q ss_pred CcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 619 DFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.+.++..++.+|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 677899999999999999999999998765
No 81
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.18 E-value=5.5e-11 Score=114.53 Aligned_cols=168 Identities=9% Similarity=0.024 Sum_probs=113.2
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHhccCCC-----------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------C
Q 047767 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----------PNVVCFTSIMNGYSRNGMGREALDMLEVMIQR------G 513 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g 513 (666)
....+..+...|...|++++|...|++..+ .....+..+...+...|++++|+.+++++.+. +
T Consensus 110 ~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~ 189 (311)
T 3nf1_A 110 VAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTKLGP 189 (311)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTSCT
T ss_pred HHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCC
Confidence 355667778888888999888888887652 12456778888999999999999999998874 2
Q ss_pred CCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhh------CCCCC-chHHHH------HHHHHHhcCChHHHHHHHHh
Q 047767 514 LIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVY------GIDAD-RQHYSC------MIDMLGRAGILDKAEELLQQ 579 (666)
Q Consensus 514 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~------l~~~~~~~g~~~~A~~~~~~ 579 (666)
..|+.. ++..+...+...|++++|.+.++++.+.. ...+. ...+.. +...+...+.+.+|...++.
T Consensus 190 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~ 269 (311)
T 3nf1_A 190 DDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGWYKA 269 (311)
T ss_dssp TCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC-----
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHHHhh
Confidence 244433 67888889999999999999999988631 11222 222222 22334445555666666666
Q ss_pred CC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 580 TP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 580 ~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
.. ..| ...++..+...|...|++++|.+.+++++++.|.
T Consensus 270 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l~~~ 310 (311)
T 3nf1_A 270 CKVDSPTVTTTLKNLGALYRRQGKFEAAETLEEAAMRSRKQ 310 (311)
T ss_dssp ----CHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHC-
T ss_pred cCCCCchHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHhhc
Confidence 55 233 5678888999999999999999999999998775
No 82
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.18 E-value=1.1e-09 Score=99.47 Aligned_cols=65 Identities=9% Similarity=-0.015 Sum_probs=57.3
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCc---chHHHHHHHHhhcCCchHHHHHHHHHHhCCCCcCC
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDF---AVYSQVSNFYSEIGEFEVSMQIRETALARKLTRDI 655 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~ 655 (666)
.+...+...|++++|+..++++++..|+++ .++..++.+|.+.|++++|++.++.+...+...+.
T Consensus 152 ~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 152 SVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred HHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 456678899999999999999999999876 56899999999999999999999999887766543
No 83
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.16 E-value=5e-11 Score=100.28 Aligned_cols=139 Identities=9% Similarity=-0.098 Sum_probs=97.8
Q ss_pred HHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCC
Q 047767 492 GYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGI 569 (666)
Q Consensus 492 ~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~ 569 (666)
.+...|++++|++.++.... ..|+.. .+..+...|.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|+
T Consensus 6 ~~~~~~~~e~ai~~~~~a~~--~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~---~p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 6 MRRSKADVERYIASVQGSTP--SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINV---QERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp -CCCHHHHHHHHHHHHHHSC--SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTC
T ss_pred HHHHcChHHHHHHHHHHhcc--cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCc
Confidence 34455677777777776654 344433 4556677777778888888888877754 454 6777778888888888
Q ss_pred hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHH-HHHHHHhcCCCCcchHHHHHHHHhhcCC
Q 047767 570 LDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRR-VANILMELEPVDFAVYSQVSNFYSEIGE 635 (666)
Q Consensus 570 ~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~-~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 635 (666)
+++|+..|++.. ..| +...|..+...+...|++++|.+ .++++++++|+++.+|...+.++...|+
T Consensus 81 ~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFPGSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHSTTCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHhCc
Confidence 888888877654 344 56777777777888887766554 4578888888888888877887777765
No 84
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.14 E-value=4.8e-09 Score=103.96 Aligned_cols=54 Identities=7% Similarity=-0.057 Sum_probs=29.5
Q ss_pred HHHHHHhcCChHHHHHHhccCCCC-----C----cccHHHHHHHHHhcCChhHHHHHHHHHHH
Q 047767 355 LTDMYGKCNVIESSVAVFESAPGR-----S----LECCNSLMTSLLHSGNIKDAVEMFGFMVD 408 (666)
Q Consensus 355 l~~~~~~~~~~~~a~~~~~~~~~~-----~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~ 408 (666)
....+...|++++|...|++.... + ..++..+...|...|+++.|+..+++..+
T Consensus 107 ~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~ 169 (378)
T 3q15_A 107 RGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALD 169 (378)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 344455566666666666543221 1 12455555666666666666666665543
No 85
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.14 E-value=8.3e-10 Score=103.09 Aligned_cols=180 Identities=9% Similarity=-0.049 Sum_probs=89.8
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCC--C-C---HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCC-HHHHHH
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS--P-N---VVCFTSIMNGYSRNGMGREALDMLEVMIQRGL-IPD-KVTFLC 523 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~-~---~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~-~~~~~~ 523 (666)
...+-.+...+.+.|++++|...|+++.+ | + ...+..+..+|.+.|++++|+..|++..+..- .|. ...+..
T Consensus 15 ~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~ 94 (261)
T 3qky_A 15 PQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYE 94 (261)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHH
T ss_pred HHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHH
Confidence 33344444455555555555555555442 2 1 33444555555555555555555555555210 111 123334
Q ss_pred HHHHhcC--------CCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHH
Q 047767 524 VLAGCNH--------SGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLR 594 (666)
Q Consensus 524 l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~ 594 (666)
+..++.. .|++++|...|+++.+. .|+ ......+.......+.. ...+..++.
T Consensus 95 lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~p~~~~~~~a~~~~~~~~~~~---------------~~~~~~la~ 156 (261)
T 3qky_A 95 RAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR---YPNHELVDDATQKIRELRAKL---------------ARKQYEAAR 156 (261)
T ss_dssp HHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH---CTTCTTHHHHHHHHHHHHHHH---------------HHHHHHHHH
T ss_pred HHHHHHHhcccccccchhHHHHHHHHHHHHHH---CcCchhHHHHHHHHHHHHHHH---------------HHHHHHHHH
Confidence 4444444 55555555555555543 232 22221110000000000 001244556
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCC---cchHHHHHHHHhhc----------CCchHHHHHHHHHHhC
Q 047767 595 SCRVHGNEIIGRRVANILMELEPVD---FAVYSQVSNFYSEI----------GEFEVSMQIRETALAR 649 (666)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~~~~~~----------g~~~~A~~~~~~~~~~ 649 (666)
.+...|++++|+..++++++..|++ +.++..++.+|... |++++|+..++++.+.
T Consensus 157 ~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~ 224 (261)
T 3qky_A 157 LYERRELYEAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI 224 (261)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH
Confidence 6677777777777777777777763 34666777777655 6677777777766653
No 86
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.13 E-value=2.7e-10 Score=120.86 Aligned_cols=165 Identities=10% Similarity=0.042 Sum_probs=146.1
Q ss_pred CCchHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHH
Q 047767 449 ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCV 524 (666)
Q Consensus 449 ~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l 524 (666)
+.+...++.+...|.+.|++++|++.|++..+ .+...|..+..+|.+.|++++|+..|++.++ +.|+. ..|..+
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~--l~P~~~~a~~nL 83 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVFPEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNM 83 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHH
Confidence 34567788899999999999999999998773 4578999999999999999999999999998 66764 589999
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCC
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGN 601 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~ 601 (666)
..++...|++++|++.|++..+. .|+ ...|..+..+|...|++++|++.|++.. ..| +...|..++..+...|+
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l---~P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQI---NPAFADAHSNLASIHKDSGNIPEAIASYRTALKLKPDFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHhhhhhHHHhccc
Confidence 99999999999999999999865 666 7899999999999999999999999765 455 67899999999999999
Q ss_pred hHHHHHHHHHHHhcCCC
Q 047767 602 EIIGRRVANILMELEPV 618 (666)
Q Consensus 602 ~~~a~~~~~~~~~~~p~ 618 (666)
+++|.+.+++++++.|+
T Consensus 161 ~~~A~~~~~kal~l~~~ 177 (723)
T 4gyw_A 161 WTDYDERMKKLVSIVAD 177 (723)
T ss_dssp CTTHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhChh
Confidence 99999999999886543
No 87
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.13 E-value=3.3e-10 Score=112.35 Aligned_cols=221 Identities=13% Similarity=0.000 Sum_probs=154.5
Q ss_pred hhcccchhhHHHHHHHHHHhC--C---CCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-----C-----CHHHHHHHHH
Q 047767 427 VSASANLGSCRLLHCCAIKSG--F---ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-----P-----NVVCFTSIMN 491 (666)
Q Consensus 427 ~~~~~~~~~a~~~~~~~~~~~--~---~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~-----~~~~~~~li~ 491 (666)
+...|+++.|...+..+.+.. . +....++..+...|...|+++.|...+++..+ + ...+++.+..
T Consensus 111 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~ 190 (378)
T 3q15_A 111 EFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIAG 190 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHH
T ss_pred HHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHHH
Confidence 334445555555444443321 0 11244566777888889999888887776542 2 2456788889
Q ss_pred HHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhC--CCCC-chHHHHHHHH
Q 047767 492 GYSRNGMGREALDMLEVMIQR----GLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYG--IDAD-RQHYSCMIDM 563 (666)
Q Consensus 492 ~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~p~-~~~~~~l~~~ 563 (666)
+|...|++++|...+++..+. +-.+. ..++..+...+...|++++|.+.+++..+... ..|. ..++..++.+
T Consensus 191 ~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 270 (378)
T 3q15_A 191 NYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSWT 270 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHHH
Confidence 999999999999999887762 11111 23677788889999999999999999886211 1233 6778889999
Q ss_pred HHhcCChHHHHHHHHhCC----C--CCC-HHHHHHHHHHHHhhCC---hHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc
Q 047767 564 LGRAGILDKAEELLQQTP----G--GGD-CMMWSSLLRSCRVHGN---EIIGRRVANILMELEPVDFAVYSQVSNFYSEI 633 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~----~--~~~-~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~ 633 (666)
|.+.|++++|.+.+++.. . .|. ...+..+...+...++ +.+|+..+++. ...|.....+..++.+|...
T Consensus 271 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~-~~~~~~~~~~~~la~~y~~~ 349 (378)
T 3q15_A 271 LCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK-NLHAYIEACARSAAAVFESS 349 (378)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHHHHHT
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC-CChhHHHHHHHHHHHHHHHC
Confidence 999999999999988643 1 222 2345555556667777 77777777762 23344456778899999999
Q ss_pred CCchHHHHHHHHHHh
Q 047767 634 GEFEVSMQIRETALA 648 (666)
Q Consensus 634 g~~~~A~~~~~~~~~ 648 (666)
|++++|.+.|++..+
T Consensus 350 g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 350 CHFEQAAAFYRKVLK 364 (378)
T ss_dssp TCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHH
Confidence 999999999998764
No 88
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.11 E-value=9.4e-09 Score=95.15 Aligned_cols=39 Identities=10% Similarity=-0.062 Sum_probs=19.0
Q ss_pred HHhcCChHHHHHHhccCCCCCccc-HHHHHHHHHhcCChh
Q 047767 359 YGKCNVIESSVAVFESAPGRSLEC-CNSLMTSLLHSGNIK 397 (666)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~~~~~-~~~li~~~~~~~~~~ 397 (666)
..-.|.+..++.-...+...+... ---+.++|...|+++
T Consensus 23 ~fy~G~yq~~i~e~~~~~~~~~~~~~~~~~Rs~iAlg~~~ 62 (310)
T 3mv2_B 23 NYYTGNFVQCLQEIEKFSKVTDNTLLFYKAKTLLALGQYQ 62 (310)
T ss_dssp HHTTTCHHHHTHHHHTSSCCCCHHHHHHHHHHHHHTTCCC
T ss_pred HHHhhHHHHHHHHHHhcCccchHHHHHHHHHHHHHcCCCc
Confidence 334567766666544443322221 122335666666655
No 89
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.09 E-value=1.6e-09 Score=89.23 Aligned_cols=128 Identities=14% Similarity=0.185 Sum_probs=85.5
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHh
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRV 598 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~ 598 (666)
+..+...+...|++++|..+++++.+. . +.+...+..++..+...|++++|.++++++. .+.+...+..+...+..
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~ 81 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYK 81 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHc-C-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHCCCchHHHHHHHHHHHH
Confidence 334444555555555555555555543 1 1234455556666666666666666666543 22345566677777788
Q ss_pred hCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 599 HGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 599 ~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.|++++|.+.++++.+..|.++.++..++.++...|++++|.+.++++.+..
T Consensus 82 ~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 133 (136)
T 2fo7_A 82 QGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 133 (136)
T ss_dssp TTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHS
T ss_pred hcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccC
Confidence 8888888888888888888888888888888888888888888888776543
No 90
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.09 E-value=1.4e-09 Score=102.86 Aligned_cols=172 Identities=10% Similarity=-0.009 Sum_probs=139.3
Q ss_pred HHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCC
Q 047767 472 HQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGI 550 (666)
Q Consensus 472 ~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 550 (666)
...+......+...+..+...+...|++++|...|++..+ ..|+. ..+..+...+...|++++|...++++...
T Consensus 106 ~~~l~~~lp~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~--- 180 (287)
T 3qou_A 106 RALLDXVLPREEELXAQQAMQLMQESNYTDALPLLXDAWQ--LSNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ--- 180 (287)
T ss_dssp HHHHHHHSCCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HTTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---
T ss_pred HHHHHHHcCCchhhHHHHHHHHHhCCCHHHHHHHHHHHHH--hCCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---
Confidence 3334443444556677788888999999999999999998 56654 47888889999999999999999998754
Q ss_pred CCCchHHHH-HHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC--cchHHH
Q 047767 551 DADRQHYSC-MIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD--FAVYSQ 625 (666)
Q Consensus 551 ~p~~~~~~~-l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~ 625 (666)
.|+...... ....+.+.++.++|++.+++.. ..| +...+..+...+...|++++|+..++++++.+|++ +.++..
T Consensus 181 ~p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~ 260 (287)
T 3qou_A 181 DQDTRYQGLVAQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXT 260 (287)
T ss_dssp GCSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHH
T ss_pred hcchHHHHHHHHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHH
Confidence 566433332 3334677888888998888755 344 77899999999999999999999999999999998 889999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHh
Q 047767 626 VSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 626 l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
|+.++...|+.++|...+++...
T Consensus 261 l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 261 FQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp HHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHcCCCCcHHHHHHHHHH
Confidence 99999999999999999987653
No 91
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.09 E-value=2.4e-10 Score=96.06 Aligned_cols=123 Identities=10% Similarity=-0.071 Sum_probs=104.0
Q ss_pred HHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhC
Q 047767 524 VLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHG 600 (666)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~ 600 (666)
|...+...|++++|++.++.... ..|+ ...+..+..+|.+.|++++|++.|++.. ..| +...|..+...+...|
T Consensus 3 LG~~~~~~~~~e~ai~~~~~a~~---~~p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~~ 79 (150)
T 4ga2_A 3 LGSMRRSKADVERYIASVQGSTP---SPRQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQERDPKAHRFLGLLYELEE 79 (150)
T ss_dssp ----CCCHHHHHHHHHHHHHHSC---SHHHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred hHHHHHHcChHHHHHHHHHHhcc---cCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcC
Confidence 44567778899999999988763 3555 5566789999999999999999999865 445 7889999999999999
Q ss_pred ChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHH-HHHHHhC
Q 047767 601 NEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI-RETALAR 649 (666)
Q Consensus 601 ~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~-~~~~~~~ 649 (666)
++++|+..|+++++++|+++.++..++.+|...|++++|.+. ++++.+.
T Consensus 80 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l 129 (150)
T 4ga2_A 80 NTDKAVECYRRSVELNPTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKL 129 (150)
T ss_dssp CHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHh
Confidence 999999999999999999999999999999999999988776 4777654
No 92
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=99.07 E-value=6e-10 Score=92.98 Aligned_cols=103 Identities=9% Similarity=-0.020 Sum_probs=90.6
Q ss_pred CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 549 GIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 549 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
.+.|+ ...+..+...+.+.|++++|+..|+++. ..| +...|..+..++...|++++|+..|+++++++|+++.+|..
T Consensus 30 ~l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~~~ 109 (151)
T 3gyz_A 30 AIPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYDFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPVFH 109 (151)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHHHH
Confidence 45565 6678888889999999999999998765 444 78899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 626 VSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 626 l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+|.+|...|++++|+..|+++.+...
T Consensus 110 lg~~~~~lg~~~eA~~~~~~al~l~~ 135 (151)
T 3gyz_A 110 TGQCQLRLKAPLKAKECFELVIQHSN 135 (151)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhCC
Confidence 99999999999999999999887553
No 93
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.07 E-value=2.3e-09 Score=100.06 Aligned_cols=194 Identities=10% Similarity=0.053 Sum_probs=139.2
Q ss_pred hhcccchhhHHHHHHHHHHhCCCC--chHHHHHHHHHHHhhCCHHHHHHHhccCCC--C---C-HHHHHHHHHHHHH---
Q 047767 427 VSASANLGSCRLLHCCAIKSGFES--NIAVSCSLMDAYSRCGHIELSHQVFEKIPS--P---N-VVCFTSIMNGYSR--- 495 (666)
Q Consensus 427 ~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~---~-~~~~~~li~~~~~--- 495 (666)
+...|+++.|...+..+.+..... ....+..+...|.+.|++++|...|+...+ | . ...+..+..++..
T Consensus 25 ~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~ 104 (261)
T 3qky_A 25 FYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQAEYERAMCYYKLSP 104 (261)
T ss_dssp HHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHHHHHHHHHCC
T ss_pred HHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHHHHHHHHHHHHhcc
Confidence 788999999999999998765322 166777888999999999999999998763 3 2 4567778888888
Q ss_pred -----cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCCh
Q 047767 496 -----NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570 (666)
Q Consensus 496 -----~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 570 (666)
.|++++|+..|++..+. .|+... ...+...+..+... -...+..++.+|.+.|++
T Consensus 105 ~~~~~~~~~~~A~~~~~~~l~~--~p~~~~-------------~~~a~~~~~~~~~~-----~~~~~~~la~~~~~~g~~ 164 (261)
T 3qky_A 105 PYELDQTDTRKAIEAFQLFIDR--YPNHEL-------------VDDATQKIRELRAK-----LARKQYEAARLYERRELY 164 (261)
T ss_dssp CTTSCCHHHHHHHHHHHHHHHH--CTTCTT-------------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHTTCH
T ss_pred cccccchhHHHHHHHHHHHHHH--CcCchh-------------HHHHHHHHHHHHHH-----HHHHHHHHHHHHHHccCH
Confidence 99999999999999984 565321 11111111111111 012256678888999999
Q ss_pred HHHHHHHHhCC-CCC----CHHHHHHHHHHHHhh----------CChHHHHHHHHHHHhcCCCCcch---HHHHHHHHhh
Q 047767 571 DKAEELLQQTP-GGG----DCMMWSSLLRSCRVH----------GNEIIGRRVANILMELEPVDFAV---YSQVSNFYSE 632 (666)
Q Consensus 571 ~~A~~~~~~~~-~~~----~~~~~~~l~~~~~~~----------~~~~~a~~~~~~~~~~~p~~~~~---~~~l~~~~~~ 632 (666)
++|+..++++. ..| ....+..++.++... |++++|+..++++++..|+++.+ ...+..++..
T Consensus 165 ~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~a~~~l~~~~~~ 244 (261)
T 3qky_A 165 EAAAVTYEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQIFPDSPLLRTAEELYTRARQR 244 (261)
T ss_dssp HHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHHCTTCTHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHHCCCChHHHHHHHHHHHHHHH
Confidence 99999888764 233 245677777777765 88999999999999999998643 4456666666
Q ss_pred cCCchHHH
Q 047767 633 IGEFEVSM 640 (666)
Q Consensus 633 ~g~~~~A~ 640 (666)
.|+++++.
T Consensus 245 ~~~~~~~~ 252 (261)
T 3qky_A 245 LTELEGDA 252 (261)
T ss_dssp HHHHHTCT
T ss_pred HHHhhhhh
Confidence 66555443
No 94
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.07 E-value=1.1e-08 Score=94.70 Aligned_cols=158 Identities=9% Similarity=0.024 Sum_probs=74.6
Q ss_pred HHHHHHhhCCHHHHHHHhccCCC-----CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCC-----CHHHHHHHHHH
Q 047767 458 LMDAYSRCGHIELSHQVFEKIPS-----PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIP-----DKVTFLCVLAG 527 (666)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p-----~~~~~~~l~~~ 527 (666)
+..++...|++++|.+++.+... .+...+..++..+.+.|+.+.|.+.+++|.+ ..| +..+...+..+
T Consensus 106 la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~~--~~~d~~~~~d~~l~~Laea 183 (310)
T 3mv2_B 106 LATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYTN--AIEDTVSGDNEMILNLAES 183 (310)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCccccccchHHHHHHHHH
Confidence 33445555555555555555421 1334445555555556666666666665555 344 23333333333
Q ss_pred --hc--CCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCC-----------CC-CHHHHHH
Q 047767 528 --CN--HSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPG-----------GG-DCMMWSS 591 (666)
Q Consensus 528 --~~--~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----------~~-~~~~~~~ 591 (666)
.. ..+++.+|..+|+++.+. .|+..+...+..++.+.|++++|.+.++.+.. .| +..++..
T Consensus 184 ~v~l~~g~~~~q~A~~~f~El~~~---~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~~~~p~~~~k~~~~p~~~~~LaN 260 (310)
T 3mv2_B 184 YIKFATNKETATSNFYYYEELSQT---FPTWKTQLGLLNLHLQQRNIAEAQGIVELLLSDYYSVEQKENAVLYKPTFLAN 260 (310)
T ss_dssp HHHHHHTCSTTTHHHHHHHHHHTT---SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHHSHHHHTTTCHHHHSSHHHHHHH
T ss_pred HHHHHhCCccHHHHHHHHHHHHHh---CCCcccHHHHHHHHHHcCCHHHHHHHHHHHHHhcccccccccCCCCCHHHHHH
Confidence 11 122555556666555432 23322222233355555666666555553321 12 3344434
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCcch
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAV 622 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 622 (666)
++......|+ +|.++++++.+..|++|.+
T Consensus 261 ~i~l~~~lgk--~a~~l~~qL~~~~P~hp~i 289 (310)
T 3mv2_B 261 QITLALMQGL--DTEDLTNQLVKLDHEHAFI 289 (310)
T ss_dssp HHHHHHHTTC--TTHHHHHHHHHTTCCCHHH
T ss_pred HHHHHHHhCh--HHHHHHHHHHHhCCCChHH
Confidence 4433334444 4555555555555555433
No 95
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.06 E-value=3.2e-10 Score=121.08 Aligned_cols=167 Identities=9% Similarity=-0.096 Sum_probs=139.4
Q ss_pred HhhCCHHHHHHHhccCC-----------CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcC
Q 047767 463 SRCGHIELSHQVFEKIP-----------SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNH 530 (666)
Q Consensus 463 ~~~g~~~~A~~~~~~~~-----------~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~ 530 (666)
...|++++|.+.+++.. ..+...+..+..++...|++++|+..+++..+ ..|+ ...|..+..++..
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~--~~p~~~~a~~~lg~~~~~ 479 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDFSESVELPLMEVRALLDLGDVAKATRKLDDLAE--RVGWRWRLVWYRAVAELL 479 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HHCCCHHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhcccccccccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhc--cCcchHHHHHHHHHHHHH
Confidence 56788888888888765 24567788888999999999999999999988 4554 4578888888999
Q ss_pred CCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHH
Q 047767 531 SGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRR 607 (666)
Q Consensus 531 ~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~ 607 (666)
.|++++|.+.|+++.+. .|+ ...+..+..+|.+.|++++ ++.++++. ..| +...|..+..++...|++++|++
T Consensus 480 ~g~~~~A~~~~~~al~l---~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 480 TGDYDSATKHFTEVLDT---FPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HTCHHHHHHHHHHHHHH---STTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred cCCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 99999999999999865 565 7888999999999999999 98888765 344 67889999999999999999999
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHhhcCC
Q 047767 608 VANILMELEPVDFAVYSQVSNFYSEIGE 635 (666)
Q Consensus 608 ~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 635 (666)
.|+++++++|+++.++..++.++...|+
T Consensus 556 ~~~~al~l~P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 556 TLDEVPPTSRHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHTSCTTSTTHHHHHHHHHHHTC----
T ss_pred HHHhhcccCcccHHHHHHHHHHHHccCC
Confidence 9999999999999999999999977665
No 96
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.06 E-value=1e-09 Score=104.26 Aligned_cols=188 Identities=10% Similarity=-0.008 Sum_probs=137.5
Q ss_pred HHHHHhhCCHHHHHHHhccCCC-------C--CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--HHHHHHH
Q 047767 459 MDAYSRCGHIELSHQVFEKIPS-------P--NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGL---IPD--KVTFLCV 524 (666)
Q Consensus 459 ~~~~~~~g~~~~A~~~~~~~~~-------~--~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~~~~~~l 524 (666)
...|...|++++|...|.+..+ + ...+|+.+..+|...|++++|+..+++..+... .+. ..++..+
T Consensus 44 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~l 123 (292)
T 1qqe_A 44 ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGANFKFEL 123 (292)
T ss_dssp HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4567788999999888876642 1 146788999999999999999999998876211 111 2368888
Q ss_pred HHHhcCC-CcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CH-----HHHH
Q 047767 525 LAGCNHS-GMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG---DC-----MMWS 590 (666)
Q Consensus 525 ~~~~~~~-g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~-----~~~~ 590 (666)
...|... |++++|+..|++..+...-..+ ..++..++..|.+.|++++|++.+++.. ..| .. ..|.
T Consensus 124 g~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 203 (292)
T 1qqe_A 124 GEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSLKDYFL 203 (292)
T ss_dssp HHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGHHHHHH
T ss_pred HHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHHHHHHH
Confidence 8899986 9999999999998865211111 3568889999999999999999998754 223 21 1567
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcch-----HHHHHHHHh--hcCCchHHHHHHHHH
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAV-----YSQVSNFYS--EIGEFEVSMQIRETA 646 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~-----~~~l~~~~~--~~g~~~~A~~~~~~~ 646 (666)
.++..+...|++++|+..++++++++|..+.. +..++.++. ..+++++|+..|+.+
T Consensus 204 ~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~l~~l~~~~~~~~~~~~~~A~~~~~~~ 266 (292)
T 1qqe_A 204 KKGLCQLAATDAVAAARTLQEGQSEDPNFADSRESNFLKSLIDAVNEGDSEQLSEHCKEFDNF 266 (292)
T ss_dssp HHHHHHHHTTCHHHHHHHHHGGGCC---------HHHHHHHHHHHHTTCTTTHHHHHHHHTTS
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHhccC
Confidence 78888899999999999999999999986553 445666664 456788888887544
No 97
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.03 E-value=1.2e-09 Score=94.77 Aligned_cols=156 Identities=10% Similarity=0.036 Sum_probs=106.6
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHH-HH
Q 047767 488 SIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM-LG 565 (666)
Q Consensus 488 ~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~-~~ 565 (666)
.+...+...|++++|...+++..+ ..|+ ...+..+...+...|++++|...++++... .|++..+..+... +.
T Consensus 11 ~~a~~~~~~g~~~~A~~~~~~al~--~~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~---~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 11 KQVSELLQQGEHAQALNVIQTLSD--ELQSRGDVKLAKADCLLETKQFELAQELLATIPLE---YQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTSCH--HHHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGG---GCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHH--HCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhc---cCChHHHHHHHHHHHH
Confidence 344556666777777777666655 3343 335666666666777777777777766543 3333222222211 11
Q ss_pred hcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC--cchHHHHHHHHhhcCCchHHHH
Q 047767 566 RAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD--FAVYSQVSNFYSEIGEFEVSMQ 641 (666)
Q Consensus 566 ~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~--~~~~~~l~~~~~~~g~~~~A~~ 641 (666)
..+...+|++.+++.. ..| +...+..+...+...|++++|+..++++++.+|+. +.++..++.++...|+.++|..
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~ 165 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIAS 165 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHH
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHH
Confidence 2223334666666544 345 67888899999999999999999999999999875 5589999999999999999999
Q ss_pred HHHHHHh
Q 047767 642 IRETALA 648 (666)
Q Consensus 642 ~~~~~~~ 648 (666)
.|++...
T Consensus 166 ~y~~al~ 172 (176)
T 2r5s_A 166 KYRRQLY 172 (176)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9987754
No 98
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.03 E-value=3e-08 Score=88.81 Aligned_cols=162 Identities=8% Similarity=-0.044 Sum_probs=136.7
Q ss_pred CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCC----cHHHHHHHHHHhHHhhCCCCCchH
Q 047767 481 PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSG----MVKEGQLVFNSMKSVYGIDADRQH 556 (666)
Q Consensus 481 ~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g----~~~~a~~~~~~~~~~~~~~p~~~~ 556 (666)
.++..+..|...|...+++++|+..|++..+.| +...+..+...|.. + ++++|.++|++..+. + ++..
T Consensus 16 g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g---~~~a~~~lg~~y~~-~g~~~~~~~A~~~~~~A~~~-g---~~~a 87 (212)
T 3rjv_A 16 GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG---DGDALALLAQLKIR-NPQQADYPQARQLAEKAVEA-G---SKSG 87 (212)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT---CHHHHHHHHHHTTS-STTSCCHHHHHHHHHHHHHT-T---CHHH
T ss_pred CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC---CHHHHHHHHHHHHc-CCCCCCHHHHHHHHHHHHHC-C---CHHH
Confidence 466677778888888999999999999998865 45567777777777 6 899999999999764 3 5778
Q ss_pred HHHHHHHHHh----cCChHHHHHHHHhCCCCCC----HHHHHHHHHHHHh----hCChHHHHHHHHHHHhcCCCCcchHH
Q 047767 557 YSCMIDMLGR----AGILDKAEELLQQTPGGGD----CMMWSSLLRSCRV----HGNEIIGRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 557 ~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~----~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~~~~~~~ 624 (666)
+..|...|.. .+++++|++++++.....+ ...+..|...|.. .++.++|+..++++.+. |.++.++.
T Consensus 88 ~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~-~~~~~a~~ 166 (212)
T 3rjv_A 88 EIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKGSSSL-SRTGYAEY 166 (212)
T ss_dssp HHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHT-SCTTHHHH
T ss_pred HHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHc-CCCHHHHH
Confidence 8889999987 8899999999998775554 7888899999888 78999999999999998 67788999
Q ss_pred HHHHHHhhc-C-----CchHHHHHHHHHHhCCC
Q 047767 625 QVSNFYSEI-G-----EFEVSMQIRETALARKL 651 (666)
Q Consensus 625 ~l~~~~~~~-g-----~~~~A~~~~~~~~~~~~ 651 (666)
.|+.+|... | ++++|+++|++..+.|.
T Consensus 167 ~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g~ 199 (212)
T 3rjv_A 167 WAGMMFQQGEKGFIEPNKQKALHWLNVSCLEGF 199 (212)
T ss_dssp HHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcCC
Confidence 999999764 3 89999999999988765
No 99
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.01 E-value=3.1e-09 Score=100.40 Aligned_cols=225 Identities=9% Similarity=-0.006 Sum_probs=159.9
Q ss_pred HHhcCChhHHHHHHHHHHHc-----C-CCCC-HHHHHHHhchhhhhcccchhhHHHHHHHHHHh------CC-CCchHHH
Q 047767 390 LLHSGNIKDAVEMFGFMVDE-----G-IGLD-EVTLSTTLKALSVSASANLGSCRLLHCCAIKS------GF-ESNIAVS 455 (666)
Q Consensus 390 ~~~~~~~~~a~~~~~~m~~~-----~-~~p~-~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~ 455 (666)
....|++++|+..+++..+. + -.|+ ...+..+-.. +...++++.|...+..+.+. +- +....++
T Consensus 11 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 88 (283)
T 3edt_B 11 SSGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALV--YRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATL 88 (283)
T ss_dssp --CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHH--HHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHH
T ss_pred cCCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHH--HHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHH
Confidence 45678999999999999873 1 1122 2334444444 88899999999999888764 22 3456778
Q ss_pred HHHHHHHHhhCCHHHHHHHhccCCC-------C----CHHHHHHHHHHHHHcCChhHHHHHHHHHHHc------CCCCCH
Q 047767 456 CSLMDAYSRCGHIELSHQVFEKIPS-------P----NVVCFTSIMNGYSRNGMGREALDMLEVMIQR------GLIPDK 518 (666)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~------g~~p~~ 518 (666)
..+...|...|++++|...|++..+ + ....+..+...+...|++++|...+++..+. +-.|+.
T Consensus 89 ~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 168 (283)
T 3edt_B 89 NNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNV 168 (283)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHH
T ss_pred HHHHHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHH
Confidence 8899999999999999999987752 1 2457888899999999999999999999874 114433
Q ss_pred -HHHHHHHHHhcCCCcHHHHHHHHHHhHHhh------CCCCC-chHHHHHHHHHHhcCC------hHHHHHHHHhCCC-C
Q 047767 519 -VTFLCVLAGCNHSGMVKEGQLVFNSMKSVY------GIDAD-RQHYSCMIDMLGRAGI------LDKAEELLQQTPG-G 583 (666)
Q Consensus 519 -~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~p~-~~~~~~l~~~~~~~g~------~~~A~~~~~~~~~-~ 583 (666)
.++..+...+...|++++|..+++++.+.. ...+. ...+..+...+...+. +.++...++.... .
T Consensus 169 ~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 248 (283)
T 3edt_B 169 AKTKNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKVDS 248 (283)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCCCC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCCCC
Confidence 478888999999999999999999988641 12233 4555555555544443 3444444554442 2
Q ss_pred C-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 584 G-DCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 584 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
| ...++..+...+...|++++|...++++++..
T Consensus 249 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 282 (283)
T 3edt_B 249 PTVNTTLRSLGALYRRQGKLEAAHTLEDCASRNR 282 (283)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhh
Confidence 3 45678889999999999999999999998753
No 100
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=2.5e-09 Score=112.35 Aligned_cols=158 Identities=8% Similarity=-0.062 Sum_probs=122.6
Q ss_pred hCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHH
Q 047767 465 CGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLV 540 (666)
Q Consensus 465 ~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~ 540 (666)
.|++++|.+.|++..+ .+...|..+...+...|++++|.+.+++..+ ..|+ ...+..+...+...|++++|.+.
T Consensus 2 ~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~ 79 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLA--LHPGHPEAVARLGRVRWTQQRHAEAAVL 79 (568)
T ss_dssp -------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TSTTCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHCCCHHHHHHH
Confidence 4788999999988774 4577888999999999999999999999988 4565 45788888999999999999999
Q ss_pred HHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh---CChHHHHHHHHHHHh
Q 047767 541 FNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH---GNEIIGRRVANILME 614 (666)
Q Consensus 541 ~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---~~~~~a~~~~~~~~~ 614 (666)
+++..+. .|+ ...+..+..+|.+.|++++|.+.+++.. ..| +...+..+...+... |++++|.+.++++++
T Consensus 80 ~~~al~~---~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 80 LQQASDA---APEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHhc---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 9999875 455 7788999999999999999999998765 334 677888899999999 999999999999999
Q ss_pred cCCCCcchHHHHH
Q 047767 615 LEPVDFAVYSQVS 627 (666)
Q Consensus 615 ~~p~~~~~~~~l~ 627 (666)
.+|.+...+..++
T Consensus 157 ~~p~~~~~~~~l~ 169 (568)
T 2vsy_A 157 QGVGAVEPFAFLS 169 (568)
T ss_dssp HTCCCSCHHHHTT
T ss_pred cCCcccChHHHhC
Confidence 9999988888777
No 101
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=3.2e-09 Score=85.94 Aligned_cols=113 Identities=11% Similarity=-0.034 Sum_probs=68.0
Q ss_pred CCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHH
Q 047767 514 LIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMW 589 (666)
Q Consensus 514 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~ 589 (666)
+.|+.. .+......+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.+++.. ..| +...|
T Consensus 8 inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~ 84 (126)
T 4gco_A 8 INPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKR---DPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGY 84 (126)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred HCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHH
Confidence 344432 4555556666666666666666666543 333 5566666666666666666666666543 223 45566
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHH
Q 047767 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNF 629 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~ 629 (666)
..++.++...|++++|++.|+++++++|+++.++..|+.+
T Consensus 85 ~~lg~~~~~~~~~~~A~~~~~~al~l~P~~~~a~~~l~~~ 124 (126)
T 4gco_A 85 IRKAACLVAMREWSKAQRAYEDALQVDPSNEEAREGVRNC 124 (126)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHCcCCHHHHHHHHHh
Confidence 6666666666666666666666666666666666666554
No 102
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=99.00 E-value=2e-09 Score=87.15 Aligned_cols=103 Identities=11% Similarity=0.014 Sum_probs=92.7
Q ss_pred CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 549 GIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 549 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
-+.|+ ...+...+..|.+.|++++|++.|++.. ..| +...|..+..++...|++++|+..++++++++|+++.+|..
T Consensus 7 ~inP~~a~~~~~~G~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~p~~~~a~~~ 86 (126)
T 4gco_A 7 YINPELAQEEKNKGNEYFKKGDYPTAMRHYNEAVKRDPENAILYSNRAACLTKLMEFQRALDDCDTCIRLDSKFIKGYIR 86 (126)
T ss_dssp CCCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHH
T ss_pred HHCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhhhhhhHHHHH
Confidence 35666 6778889999999999999999999865 444 78899999999999999999999999999999999999999
Q ss_pred HHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 626 VSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 626 l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+|.+|...|++++|++.|++..+..+
T Consensus 87 lg~~~~~~~~~~~A~~~~~~al~l~P 112 (126)
T 4gco_A 87 KAACLVAMREWSKAQRAYEDALQVDP 112 (126)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHCc
Confidence 99999999999999999999887543
No 103
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=98.97 E-value=1.7e-08 Score=82.96 Aligned_cols=131 Identities=14% Similarity=0.153 Sum_probs=106.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHH
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 564 (666)
.|..+...+...|++++|..+++++.+.+ +.+...+..+...+...|++++|..+++++... . +.+...+..++..+
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~l~~~~ 79 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PRSAEAWYNLGNAY 79 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHH-C-CCchHHHHHHHHHH
Confidence 46677888888899999999999888753 234557777888888889999999999998865 2 33467788888999
Q ss_pred HhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 565 GRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 565 ~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
...|++++|.++++++. .+.+...+..+...+...|++++|...++++++.+|+
T Consensus 80 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~ 135 (136)
T 2fo7_A 80 YKQGDYDEAIEYYQKALELDPRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPR 135 (136)
T ss_dssp HTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHSTT
T ss_pred HHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHccHHHHHHHHHHHHccCCC
Confidence 99999999999998765 2336778888888999999999999999999998886
No 104
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=98.97 E-value=6.1e-09 Score=98.82 Aligned_cols=171 Identities=8% Similarity=-0.046 Sum_probs=137.3
Q ss_pred CHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCC-HHHHHHHHHHhcCCCcHHHHHHHH
Q 047767 467 HIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR----GLIPD-KVTFLCVLAGCNHSGMVKEGQLVF 541 (666)
Q Consensus 467 ~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~ 541 (666)
++++|...|+. ....|...|++++|...|++..+. |-.++ ..+|..+..+|...|++++|+..+
T Consensus 32 ~~~~A~~~~~~-----------a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~ 100 (292)
T 1qqe_A 32 KFEEAADLCVQ-----------AATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSL 100 (292)
T ss_dssp HHHHHHHHHHH-----------HHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred cHHHHHHHHHH-----------HHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 47777777654 366788899999999999988763 32222 347889999999999999999999
Q ss_pred HHhHHhhCCCCC----chHHHHHHHHHHhc-CChHHHHHHHHhCC-CCC---C----HHHHHHHHHHHHhhCChHHHHHH
Q 047767 542 NSMKSVYGIDAD----RQHYSCMIDMLGRA-GILDKAEELLQQTP-GGG---D----CMMWSSLLRSCRVHGNEIIGRRV 608 (666)
Q Consensus 542 ~~~~~~~~~~p~----~~~~~~l~~~~~~~-g~~~~A~~~~~~~~-~~~---~----~~~~~~l~~~~~~~~~~~~a~~~ 608 (666)
++..+.+.-..+ ..++..+..+|... |++++|++.+++.. ..| + ..++..++..+...|++++|+..
T Consensus 101 ~~Al~l~~~~g~~~~~a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~ 180 (292)
T 1qqe_A 101 ENAIQIFTHRGQFRRGANFKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDI 180 (292)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHH
Confidence 998865211112 45788999999996 99999999998764 111 1 35788889999999999999999
Q ss_pred HHHHHhcCCCCcc-------hHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 609 ANILMELEPVDFA-------VYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 609 ~~~~~~~~p~~~~-------~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
++++++..|+++. .+..++.++...|++++|+..+++..+
T Consensus 181 ~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 181 YSKLIKSSMGNRLSQWSLKDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHTTSSCTTTGGGHHHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHhcCCcccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 9999999988754 478899999999999999999987764
No 105
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.95 E-value=6.5e-09 Score=92.98 Aligned_cols=157 Identities=11% Similarity=-0.012 Sum_probs=112.1
Q ss_pred HHHHHHHHhhCCHHHHHHHhccCCC--C-CHHHHHH----------------HHHHHHHcCChhHHHHHHHHHHHcCCCC
Q 047767 456 CSLMDAYSRCGHIELSHQVFEKIPS--P-NVVCFTS----------------IMNGYSRNGMGREALDMLEVMIQRGLIP 516 (666)
Q Consensus 456 ~~l~~~~~~~g~~~~A~~~~~~~~~--~-~~~~~~~----------------li~~~~~~~~~~~a~~~~~~m~~~g~~p 516 (666)
-.....+...|++++|...|++..+ | +...|.. +..+|.+.|++++|+..+++..+ +.|
T Consensus 8 ~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~--~~p 85 (208)
T 3urz_A 8 LQKVSAAIEAGQNGQAVSYFRQTIALNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQ--KAP 85 (208)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCT
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHhCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HCC
Confidence 3344566788889999888888764 3 3445555 77888888888888888888888 456
Q ss_pred C-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCC--hHHHHHHHHhCCCCCCH--HHHH
Q 047767 517 D-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGI--LDKAEELLQQTPGGGDC--MMWS 590 (666)
Q Consensus 517 ~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~--~~~A~~~~~~~~~~~~~--~~~~ 590 (666)
+ ...+..+...+...|++++|...|+++.+. .|+ ...+..+..+|...|+ .+++...++... .|+. ..+.
T Consensus 86 ~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~a~~ 161 (208)
T 3urz_A 86 NNVDCLEACAEMQVCRGQEKDALRMYEKILQL---EADNLAANIFLGNYYYLTAEQEKKKLETDYKKLS-SPTKMQYARY 161 (208)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC----CCCHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHh-CCCchhHHHH
Confidence 4 457788888888888888888888888865 555 6778888887766554 445566666655 3332 3444
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
....++...|++++|+..|+++++++|+
T Consensus 162 ~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 162 RDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 4566667778888888888888888886
No 106
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.94 E-value=1.1e-07 Score=90.27 Aligned_cols=161 Identities=11% Similarity=-0.031 Sum_probs=125.4
Q ss_pred HHHHHHHHcCChhHHHHHHHHHHHcC-CCCCHH----HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHH
Q 047767 488 SIMNGYSRNGMGREALDMLEVMIQRG-LIPDKV----TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYS 558 (666)
Q Consensus 488 ~li~~~~~~~~~~~a~~~~~~m~~~g-~~p~~~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~ 558 (666)
..+..+...|++++|..++++..+.. ..|+.. .+..+...+...|++++|...++++.....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 34677889999999999999988732 223321 2334667778889999999999999874122233 23689
Q ss_pred HHHHHHHhcCChHHHHHHHHhCC-------CC-C-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC------cchH
Q 047767 559 CMIDMLGRAGILDKAEELLQQTP-------GG-G-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD------FAVY 623 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~~~-------~~-~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~ 623 (666)
.++.+|...|++++|+..++++. .. + ...++..++..|...|++++|+..++++++..+.. +.+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 99999999999999999988654 11 1 23478889999999999999999999999865433 6789
Q ss_pred HHHHHHHhhcCC-chHHHHHHHHHHh
Q 047767 624 SQVSNFYSEIGE-FEVSMQIRETALA 648 (666)
Q Consensus 624 ~~l~~~~~~~g~-~~~A~~~~~~~~~ 648 (666)
..+|.+|...|+ +++|.+.++++.+
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 999999999995 6999999998764
No 107
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.94 E-value=2.2e-09 Score=89.76 Aligned_cols=96 Identities=9% Similarity=-0.038 Sum_probs=65.9
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..+...+.+.|++++|+..|++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..++.+|.
T Consensus 21 ~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 21 LEQLYSLAFNQYQSGXYEDAHXVFQALCVLDHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMDIXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHHcCcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCchHHHHHHHHHH
Confidence 4555566666777777777777776543 233 56666667777777777777777777777777777777777777777
Q ss_pred hcCCchHHHHHHHHHHhC
Q 047767 632 EIGEFEVSMQIRETALAR 649 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~~ 649 (666)
..|++++|++.|++..+.
T Consensus 101 ~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 777777777777766554
No 108
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=98.93 E-value=1.4e-07 Score=93.15 Aligned_cols=257 Identities=10% Similarity=-0.036 Sum_probs=132.6
Q ss_pred HhhcCCChhhHHHHHHHHHhCCCCCCcc----cHHHHHHHHHcCCChHHHHHHHHHHHHhcCC-Cc----hhhhhHHHHH
Q 047767 84 GCGKFRHPKQALYLYDEMVSHGIKESAS----TFSSVLSVCSNAGFYTEGIQIHCRVLSLGFG-LN----LYIGSPLVDL 154 (666)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~ll~~ 154 (666)
.+...|++++|...+++........+.. .++.+...+...|+++.|...+++..+.... .+ ..++..+...
T Consensus 23 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~ 102 (373)
T 1hz4_A 23 VAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEI 102 (373)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH
Confidence 3445666666666666655532111111 2344445555566666666666665542110 11 1223445555
Q ss_pred hHhcCChhHHHHhhccCCC-------C----CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCC--C--CHhhHHHHHH
Q 047767 155 YMRMGPSVRALDLFDELPE-------R----NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVE--P--NGLSFCYMVR 219 (666)
Q Consensus 155 ~~~~g~~~~a~~~~~~~~~-------~----~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~--p--~~~t~~~ll~ 219 (666)
+...|++++|...++.... + ....+..+...+...|++++|...+++.....-. + ...++..+..
T Consensus 103 ~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 182 (373)
T 1hz4_A 103 LFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQ 182 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHH
Confidence 5566666666655544322 1 1123445556667777777777777766543211 1 1234555566
Q ss_pred HhcccCChHHHHHHHHHHHHhCCCCch-HHHHH----HHHHHHHccCChHHHHHHhccCCCCC-------hhhHHHHHHH
Q 047767 220 GCSIGMLLDEGKQLHSHVIKLGWVDVN-IFVAN----ALVDFYSACGSLIEAKKSFDFIPVDD-------VISWNSIVSI 287 (666)
Q Consensus 220 ~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~----~l~~~~~~~~~~~~A~~~~~~~~~~~-------~~~~~~li~~ 287 (666)
.+...|++++|...++........... ..... ..+..+...|+.++|...++....++ ...+..+...
T Consensus 183 ~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~ 262 (373)
T 1hz4_A 183 CSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARA 262 (373)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHH
Confidence 666777777777777777654201111 11111 23344667788888877776665322 1134556677
Q ss_pred HHcCCChHHHHHHHHHhHhc----CCCCCh-hhHHHHHHHHhccCChhhHHHHHHHHH
Q 047767 288 YADYDLIFDALELFFRMQLC----RKRPSI-RSFVEFLNFASRTGNVYFGKQIHGYVT 340 (666)
Q Consensus 288 ~~~~g~~~~a~~~~~~m~~~----~~~p~~-~t~~~ll~~~~~~~~~~~a~~~~~~~~ 340 (666)
+...|++++|...++..... |..++. ..+..+..++...|+.+.|...+....
T Consensus 263 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 263 QILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYWQAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 77778888888777766432 111111 123333334444555555555544443
No 109
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=98.93 E-value=1e-08 Score=91.73 Aligned_cols=161 Identities=8% Similarity=-0.020 Sum_probs=127.1
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHH----------------HHHHhcCCCcHHHHHHHHHHhHHhh
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLC----------------VLAGCNHSGMVKEGQLVFNSMKSVY 548 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~----------------l~~~~~~~g~~~~a~~~~~~~~~~~ 548 (666)
+-.....+...|++++|+..|++..+ ..|+.. .|.. +..++...|++++|...+++..+.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~- 83 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIA--LNIDRTEMYYWTNVDKNSEISSKLATELALAYKKNRNYDKAYLFYKELLQK- 83 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH--HCHHHHHHHHHHHSCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHH--hCCCChHHHHHhhhcchhhhhHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH-
Confidence 34455667889999999999999998 567654 5666 888899999999999999999975
Q ss_pred CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCC--hHHHHHHHHHHHhcCCCCcchH
Q 047767 549 GIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGN--EIIGRRVANILMELEPVDFAVY 623 (666)
Q Consensus 549 ~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~--~~~a~~~~~~~~~~~p~~~~~~ 623 (666)
.|+ ...+..+..+|...|++++|+..|+++. ..| +...|..++..+...|+ .+.+...++++....|. ...+
T Consensus 84 --~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~a~ 160 (208)
T 3urz_A 84 --APNNVDCLEACAEMQVCRGQEKDALRMYEKILQLEADNLAANIFLGNYYYLTAEQEKKKLETDYKKLSSPTKM-QYAR 160 (208)
T ss_dssp --CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHHHHHHHC---CCCHH-HHHH
T ss_pred --CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHhHHHHHHHHHHHHHHhCCCch-hHHH
Confidence 565 8889999999999999999999999875 445 77889889888866653 45566777776544332 2456
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 624 SQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 624 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
..++.++...|++++|+..|+++.+....
T Consensus 161 ~~~g~~~~~~~~~~~A~~~~~~al~l~P~ 189 (208)
T 3urz_A 161 YRDGLSKLFTTRYEKARNSLQKVILRFPS 189 (208)
T ss_dssp HHHHHHHHHHHTHHHHHHHHHHHTTTSCC
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHhCCC
Confidence 77899999999999999999998865543
No 110
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=98.93 E-value=1.9e-09 Score=115.08 Aligned_cols=149 Identities=9% Similarity=-0.067 Sum_probs=132.4
Q ss_pred HHcCChhHHHHHHHHHH--------HcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHH
Q 047767 494 SRNGMGREALDMLEVMI--------QRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDM 563 (666)
Q Consensus 494 ~~~~~~~~a~~~~~~m~--------~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~ 563 (666)
...|++++|++.+++.. + ..|+ ...+..+..++...|++++|.+.++++.+. .|+ ...|..+..+
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~--~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~~ 476 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGV--DFSESVELPLMEVRALLDLGDVAKATRKLDDLAER---VGWRWRLVWYRAVA 476 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC---------CCTTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---HCCCHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccc--ccccchhHHHHHHHHHHhcCCHHHHHHHHHHHhcc---CcchHHHHHHHHHH
Confidence 67899999999999998 4 4454 457888888999999999999999999875 455 7889999999
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHH
Q 047767 564 LGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQ 641 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~ 641 (666)
|...|++++|++.|++.. ..| +...|..+...+...|++++ ++.|+++++.+|+++.+|..++.+|...|++++|++
T Consensus 477 ~~~~g~~~~A~~~~~~al~l~P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~ 555 (681)
T 2pzi_A 477 ELLTGDYDSATKHFTEVLDTFPGELAPKLALAATAELAGNTDE-HKFYQTVWSTNDGVISAAFGLARARSAEGDRVGAVR 555 (681)
T ss_dssp HHHHTCHHHHHHHHHHHHHHSTTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhCCchHHHHHHHHHHHHHcCCHHHHHH
Confidence 999999999999999865 445 67889999999999999999 999999999999999999999999999999999999
Q ss_pred HHHHHHh
Q 047767 642 IRETALA 648 (666)
Q Consensus 642 ~~~~~~~ 648 (666)
.|+++.+
T Consensus 556 ~~~~al~ 562 (681)
T 2pzi_A 556 TLDEVPP 562 (681)
T ss_dssp HHHTSCT
T ss_pred HHHhhcc
Confidence 9986654
No 111
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.90 E-value=2.1e-08 Score=90.16 Aligned_cols=130 Identities=8% Similarity=-0.061 Sum_probs=96.2
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHH
Q 047767 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563 (666)
Q Consensus 484 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 563 (666)
..+..+...+...|++++|+..+++. +.|+...+..+...+...|++++|.+.+++..+. . +.+...+..++.+
T Consensus 7 ~~~~~~g~~~~~~~~~~~A~~~~~~a----~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~-~-~~~~~~~~~lg~~ 80 (213)
T 1hh8_A 7 ISLWNEGVLAADKKDWKGALDAFSAV----QDPHSRICFNIGCMYTILKNMTEAEKAFTRSINR-D-KHLAVAYFQRGML 80 (213)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTS----SSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHH----cCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-C-ccchHHHHHHHHH
Confidence 34555667777888888888888766 4567777888888888888888888888888765 1 2336777788888
Q ss_pred HHhcCChHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 564 LGRAGILDKAEELLQQTP-GGG-D----------------CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
|...|++++|++.+++.. ..| + ...+..+...+...|++++|.+.++++++..|++
T Consensus 81 ~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~ 154 (213)
T 1hh8_A 81 YYQTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSEP 154 (213)
T ss_dssp HHHTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSG
T ss_pred HHHcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCccc
Confidence 888888888888887654 122 2 2667777777888888888888888888888875
No 112
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.87 E-value=2.2e-08 Score=105.06 Aligned_cols=152 Identities=14% Similarity=0.082 Sum_probs=99.9
Q ss_pred cCChhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHH
Q 047767 496 NGMGREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKA 573 (666)
Q Consensus 496 ~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A 573 (666)
.|++++|+..+++..+ ..|+ ...+..+...+...|++++|.+.+++..+. .|+ ...+..+..+|...|++++|
T Consensus 2 ~g~~~~A~~~~~~al~--~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A 76 (568)
T 2vsy_A 2 TADGPRELLQLRAAVR--HRPQDFVAWLMLADAELGMGDTTAGEMAVQRGLAL---HPGHPEAVARLGRVRWTQQRHAEA 76 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---STTCHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHCCCHHHH
Confidence 3677778888877776 4454 446777777777788888888888887743 454 66777788888888888888
Q ss_pred HHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc---CCchHHHHHHHHHHh
Q 047767 574 EELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI---GEFEVSMQIRETALA 648 (666)
Q Consensus 574 ~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~---g~~~~A~~~~~~~~~ 648 (666)
.+.+++.. ..| +...|..+...+...|++++|.+.++++++.+|+++.++..++.++... |++++|.+.++++.+
T Consensus 77 ~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al~ 156 (568)
T 2vsy_A 77 AVLLQQASDAAPEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLLPEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAVA 156 (568)
T ss_dssp HHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHhcCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHHh
Confidence 88877654 233 5667777777788888888888888888888888888888888888888 888888888877766
Q ss_pred CCCC
Q 047767 649 RKLT 652 (666)
Q Consensus 649 ~~~~ 652 (666)
.+..
T Consensus 157 ~~p~ 160 (568)
T 2vsy_A 157 QGVG 160 (568)
T ss_dssp HTCC
T ss_pred cCCc
Confidence 5543
No 113
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=98.87 E-value=2.8e-08 Score=93.79 Aligned_cols=134 Identities=12% Similarity=0.057 Sum_probs=113.7
Q ss_pred CCH-HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHH
Q 047767 516 PDK-VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSSL 592 (666)
Q Consensus 516 p~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l 592 (666)
|+. ..+..+...+...|++++|...|+++.+. .|+ ...+..++.+|.+.|++++|...++++. ..|+.......
T Consensus 114 p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~~p~~~~~~~~ 190 (287)
T 3qou_A 114 PREEELXAQQAMQLMQESNYTDALPLLXDAWQL---SNQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQDQDTRYQGLV 190 (287)
T ss_dssp CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---TTSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGGGCSHHHHHHH
T ss_pred CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHh---CCcchhHHHHHHHHHHHCCCHHHHHHHHHhCchhhcchHHHHHH
Confidence 444 46777888889999999999999999876 565 7889999999999999999999999987 45655433333
Q ss_pred H-HHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 593 L-RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 593 ~-~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
. ..+...++.+.|+..++++++.+|+++.++..|+.+|...|++++|+..++++.+....
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAENPEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHhhcccCccHHHHHHHHhcCCccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 3 33677888999999999999999999999999999999999999999999999876543
No 114
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.84 E-value=6.7e-08 Score=92.39 Aligned_cols=220 Identities=10% Similarity=-0.004 Sum_probs=154.7
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHH
Q 047767 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472 (666)
Q Consensus 393 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (666)
.|++++|.+++++..+..- .. + +...++++.|...+.. ....|...|++++|.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~-~~------~-----~~~~~~~~~A~~~~~~---------------a~~~~~~~g~~~~A~ 56 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLK-TS------F-----MKWKPDYDSAASEYAK---------------AAVAFKNAKQLEQAK 56 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHC-CC------S-----SSCSCCHHHHHHHHHH---------------HHHHHHHTTCHHHHH
T ss_pred cchHHHHHHHHHHHHHHcc-cc------c-----cCCCCCHHHHHHHHHH---------------HHHHHHHcCCHHHHH
Confidence 4667788888877665311 10 0 1113566666665544 345677889998888
Q ss_pred HHhccCCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcC---CCCC--HHHHHHHHHHhcCCCcHHHHH
Q 047767 473 QVFEKIPS-----PN----VVCFTSIMNGYSRNGMGREALDMLEVMIQRG---LIPD--KVTFLCVLAGCNHSGMVKEGQ 538 (666)
Q Consensus 473 ~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g---~~p~--~~~~~~l~~~~~~~g~~~~a~ 538 (666)
..|.+..+ .+ ...|+.+...|...|++++|+..+++..+.- -.|. ..++..+...|.. |++++|+
T Consensus 57 ~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~ 135 (307)
T 2ifu_A 57 DAYLQEAEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAV 135 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHH
Confidence 88876652 11 4578888899999999999999999877531 1222 2367788888888 9999999
Q ss_pred HHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCChHHHH
Q 047767 539 LVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP----GGGD----CMMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 539 ~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~~~~a~ 606 (666)
..+++..+.+.-..+ ..++..+..+|.+.|++++|++.+++.. ..++ ...+..++..+...|++++|.
T Consensus 136 ~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~ 215 (307)
T 2ifu_A 136 HLYQQAAAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQ 215 (307)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHH
Confidence 999998765211111 4678889999999999999999998764 1122 235666677778889999999
Q ss_pred HHHHHHHhcCCCCcch-----HHHHHHHHhhcCCchHHHHH
Q 047767 607 RVANILMELEPVDFAV-----YSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 607 ~~~~~~~~~~p~~~~~-----~~~l~~~~~~~g~~~~A~~~ 642 (666)
..+++++ .+|..... ...++.++ ..|+.+++.++
T Consensus 216 ~~~~~al-~~p~~~~~~e~~~l~~l~~~~-~~~d~~~~~~~ 254 (307)
T 2ifu_A 216 KCVRESY-SIPGFSGSEDCAALEDLLQAY-DEQDEEQLLRV 254 (307)
T ss_dssp HHHHHHT-TSTTSTTSHHHHHHHHHHHHH-HTTCHHHHHHH
T ss_pred HHHHHHh-CCCCCCCCHHHHHHHHHHHHH-HhcCHHHHHHH
Confidence 9999999 99976543 34556655 56777666653
No 115
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.82 E-value=1.4e-08 Score=97.07 Aligned_cols=196 Identities=8% Similarity=-0.093 Sum_probs=147.2
Q ss_pred ccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHH
Q 047767 430 SANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVM 509 (666)
Q Consensus 430 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 509 (666)
.+++++|..++....+..-. . + +...++++.|...|. .....|...|++++|...+.+.
T Consensus 4 ~~~~~eA~~~~~~a~k~~~~-~------~---~~~~~~~~~A~~~~~-----------~a~~~~~~~g~~~~A~~~~~~a 62 (307)
T 2ifu_A 4 AQKISEAHEHIAKAEKYLKT-S------F---MKWKPDYDSAASEYA-----------KAAVAFKNAKQLEQAKDAYLQE 62 (307)
T ss_dssp HHHHHHHHHHHHHHHHHHCC-C------S---SSCSCCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHH
T ss_pred cchHHHHHHHHHHHHHHccc-c------c---cCCCCCHHHHHHHHH-----------HHHHHHHHcCCHHHHHHHHHHH
Confidence 46677788877776653221 1 0 111467777777655 3567788999999999999887
Q ss_pred HHc----CCCCC-HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCC--CC--chHHHHHHHHHHhcCChHHHHHHHHhC
Q 047767 510 IQR----GLIPD-KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGID--AD--RQHYSCMIDMLGRAGILDKAEELLQQT 580 (666)
Q Consensus 510 ~~~----g~~p~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--p~--~~~~~~l~~~~~~~g~~~~A~~~~~~~ 580 (666)
.+. |-.+. ..+|..+...|...|++++|+..+++..+.+.-. |. ..++..+..+|.. |++++|++.+++.
T Consensus 63 l~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~A 141 (307)
T 2ifu_A 63 AEAHANNRSLFHAAKAFEQAGMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQA 141 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHH
Confidence 753 21111 2368888889999999999999999887652111 11 4678889999988 9999999999865
Q ss_pred C----CCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCc------chHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 581 P----GGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF------AVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 581 ~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~------~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
. ... ...++..+...+...|++++|+..++++++..|.+. ..+..++.++...|++++|+..|++.
T Consensus 142 l~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~A~~~~~~a 221 (307)
T 2ifu_A 142 AAVFENEERLRQAAELIGKASRLLVRQQKFDEAAASLQKEKSMYKEMENYPTCYKKCIAQVLVQLHRADYVAAQKCVRES 221 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChhHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4 111 146788889999999999999999999999876553 36778889999999999999999988
Q ss_pred H
Q 047767 647 L 647 (666)
Q Consensus 647 ~ 647 (666)
.
T Consensus 222 l 222 (307)
T 2ifu_A 222 Y 222 (307)
T ss_dssp T
T ss_pred h
Confidence 7
No 116
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.82 E-value=2.2e-08 Score=83.21 Aligned_cols=96 Identities=11% Similarity=-0.053 Sum_probs=64.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..+...+.+.|++++|+..|++.. ..| +...|..+...+...|++++|+..++++++.+|+++..+..++.+|.
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLDHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHHHHHHHHHH
Confidence 4445556666667777777777776543 233 55666666667777777777777777777777777777777777777
Q ss_pred hcCCchHHHHHHHHHHhC
Q 047767 632 EIGEFEVSMQIRETALAR 649 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~~ 649 (666)
..|++++|++.|+++.+.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 777777777777766543
No 117
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.81 E-value=8.9e-08 Score=90.87 Aligned_cols=163 Identities=11% Similarity=-0.038 Sum_probs=123.1
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-H----HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----ch
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-K----VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQ 555 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 555 (666)
.+...+..+...|++++|.+.+++..+.....+ . ..+..+...+...|++++|...+++......-..+ ..
T Consensus 77 ~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~ 156 (293)
T 2qfc_A 77 QFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLY 156 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHHH
Confidence 344566778889999999999988887432211 1 12344556678889999999999988754111112 34
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCCC-----HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC------Cc
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTP----GGGD-----CMMWSSLLRSCRVHGNEIIGRRVANILMELEPV------DF 620 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~ 620 (666)
+++.++..|...|++++|+..+++.. ..|+ ..++..++..|...|++++|+..++++++..+. -+
T Consensus 157 ~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~~ 236 (293)
T 2qfc_A 157 IENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIG 236 (293)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHHH
Confidence 78899999999999999999988654 2222 258888999999999999999999999886532 15
Q ss_pred chHHHHHHHHhhcCCchHH-HHHHHHHH
Q 047767 621 AVYSQVSNFYSEIGEFEVS-MQIRETAL 647 (666)
Q Consensus 621 ~~~~~l~~~~~~~g~~~~A-~~~~~~~~ 647 (666)
.+|..+|.+|...|++++| ...+++..
T Consensus 237 ~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 237 QLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 6789999999999999999 77787665
No 118
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.81 E-value=1.9e-08 Score=87.39 Aligned_cols=120 Identities=8% Similarity=0.061 Sum_probs=52.3
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHH-HHhcCCh--H
Q 047767 496 NGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDM-LGRAGIL--D 571 (666)
Q Consensus 496 ~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~-~~~~g~~--~ 571 (666)
.|++++|...+++..+.. +.+...+..+...+...|++++|...++++.+. .| +...+..++.+ |...|++ +
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQL---RGENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---HCSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCCHHHHHHHHHHHHHhcCCcchH
Confidence 344455555555544421 112334444444555555555555555554433 12 23344444444 4444444 5
Q ss_pred HHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 572 KAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 572 ~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
+|+..++++. ..| +...+..+...+...|++++|...++++++..|++
T Consensus 99 ~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 99 QTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp HHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred HHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 5554444332 122 33444444444444455555555555555554444
No 119
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=6.5e-08 Score=82.80 Aligned_cols=127 Identities=9% Similarity=-0.077 Sum_probs=101.0
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-G-GGDCMMWSSLLRSCR 597 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~ 597 (666)
.+..+...+...|++++|...+++..+. .+.+...+..++.++...|++++|++.+++.. . +.+...|..++..+.
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIEL--NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4556666777788888888888887765 12347778888888888888888888887654 2 336778888888999
Q ss_pred hhCChHHHHHHHHHHHhcCCCCcchHHHHHH--HHhhcCCchHHHHHHHHHHh
Q 047767 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSN--FYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~--~~~~~g~~~~A~~~~~~~~~ 648 (666)
..|++++|...++++++..|.++..+..++. .+...|++++|++.++...+
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~ 145 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDEHKRS 145 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHcccchHH
Confidence 9999999999999999999999888855544 48889999999999987653
No 120
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.76 E-value=5.3e-08 Score=84.37 Aligned_cols=129 Identities=16% Similarity=0.129 Sum_probs=103.7
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHH-HH
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSSLLRS-CR 597 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~-~~ 597 (666)
+......+...|++++|...++++.+. .|+ ...+..+..+|.+.|++++|+..++++. ..|+...+..+... +.
T Consensus 9 ~~~~a~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~~ 85 (176)
T 2r5s_A 9 LLKQVSELLQQGEHAQALNVIQTLSDE---LQSRGDVKLAKADCLLETKQFELAQELLATIPLEYQDNSYKSLIAKLELH 85 (176)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSCHH---HHTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGGCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhccCChHHHHHHHHHHHH
Confidence 445566788899999999999998865 455 7889999999999999999999999886 34444333332222 22
Q ss_pred hhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 598 VHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
..+....|+..++++++.+|+++..+..++.++...|++++|+..++++.+....
T Consensus 86 ~~~~~~~a~~~~~~al~~~P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~ 140 (176)
T 2r5s_A 86 QQAAESPELKRLEQELAANPDNFELACELAVQYNQVGRDEEALELLWNILKVNLG 140 (176)
T ss_dssp HHHTSCHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTT
T ss_pred hhcccchHHHHHHHHHHhCCCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcc
Confidence 3334456899999999999999999999999999999999999999999876554
No 121
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.76 E-value=4.1e-08 Score=94.93 Aligned_cols=94 Identities=10% Similarity=-0.071 Sum_probs=82.6
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...|..+..+|.+.|++++|+..++++. ..| +...|..+..++...|++++|+..|+++++++|+++.++..++.++.
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 275 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELDSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQ 275 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHH
Confidence 3678889999999999999999998765 334 77889999999999999999999999999999999999999999999
Q ss_pred hcCCchHH-HHHHHHHH
Q 047767 632 EIGEFEVS-MQIRETAL 647 (666)
Q Consensus 632 ~~g~~~~A-~~~~~~~~ 647 (666)
..|++++| ...++.|.
T Consensus 276 ~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 276 RIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999 45666664
No 122
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.76 E-value=1.3e-07 Score=85.76 Aligned_cols=162 Identities=9% Similarity=0.012 Sum_probs=120.1
Q ss_pred HHHHHHHHHhhCCHHHHHHHhccCCC--CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH----HHHHH
Q 047767 455 SCSLMDAYSRCGHIELSHQVFEKIPS--PN----VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV----TFLCV 524 (666)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~--~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~----~~~~l 524 (666)
+..+...+.+.|++++|...|+++.+ |+ ...+..+..++.+.|++++|+..|+++.+. .|+.. .+..+
T Consensus 7 ~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~--~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 7 IYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRL--NPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHH--CcCCCcHHHHHHHH
Confidence 34455667788899999888888763 32 246777788888899999999999998873 34321 23333
Q ss_pred HHHhc------------------CCCcHHHHHHHHHHhHHhhCCCCC-chHH-----------------HHHHHHHHhcC
Q 047767 525 LAGCN------------------HSGMVKEGQLVFNSMKSVYGIDAD-RQHY-----------------SCMIDMLGRAG 568 (666)
Q Consensus 525 ~~~~~------------------~~g~~~~a~~~~~~~~~~~~~~p~-~~~~-----------------~~l~~~~~~~g 568 (666)
..++. ..|++++|...|+++.+. .|+ ...+ ..++..|.+.|
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~---~P~~~~a~~a~~~l~~~~~~~~~~~~~~a~~~~~~~ 161 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRG---YPNSQYTTDATKRLVFLKDRLAKYEYSVAEYYTERG 161 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTT---CTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHH---CcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 33332 468899999999999865 455 3332 34667889999
Q ss_pred ChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 569 ILDKAEELLQQTP-GGGD----CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 569 ~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
++++|+..++++. ..|+ ...+..+..++.+.|+.++|++.++++....|++..
T Consensus 162 ~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~~~~~~ 219 (225)
T 2yhc_A 162 AWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANSSNTLE 219 (225)
T ss_dssp CHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCCSCCCC
T ss_pred cHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhCCCchh
Confidence 9999999999765 3343 256888899999999999999999999999888644
No 123
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.76 E-value=5.8e-08 Score=76.58 Aligned_cols=99 Identities=10% Similarity=0.008 Sum_probs=86.8
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC--CcchHHHHHHH
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV--DFAVYSQVSNF 629 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~ 629 (666)
...+..++..+...|++++|+..+++.. .+.+...|..+...+...|++++|+..++++++..|. ++.++..++.+
T Consensus 6 ~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 6 PEEYYLEGVLQYDAGNYTESIDLFEKAIQLDPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp TTGGGGHHHHHHSSCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 5667788888999999999999988754 2346778888999999999999999999999999999 99999999999
Q ss_pred Hhhc-CCchHHHHHHHHHHhCCCC
Q 047767 630 YSEI-GEFEVSMQIRETALARKLT 652 (666)
Q Consensus 630 ~~~~-g~~~~A~~~~~~~~~~~~~ 652 (666)
+... |++++|++.++...+....
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~ 109 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHH 109 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccC
Confidence 9999 9999999999988876554
No 124
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.75 E-value=9.7e-08 Score=77.75 Aligned_cols=117 Identities=7% Similarity=-0.064 Sum_probs=94.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSC 596 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 596 (666)
..+..+...+...|++++|...++++... .+.+...+..++.++...|++++|++.+++.. ..| +...+..+...+
T Consensus 13 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~ 90 (131)
T 2vyi_A 13 ERLKTEGNEQMKVENFEAAVHFYGKAIEL--NPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLAL 90 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHc--CCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHH
Confidence 35666677777788888888888887765 12346777788888888888888888887654 233 577888888899
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCch
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFE 637 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~ 637 (666)
...|++++|...++++++..|+++..+..++.++...|+++
T Consensus 91 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~~~ 131 (131)
T 2vyi_A 91 SSLNKHVEAVAYYKKALELDPDNETYKSNLKIAELKLREAP 131 (131)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTTCC
T ss_pred HHhCCHHHHHHHHHHHHhcCccchHHHHHHHHHHHHHhcCC
Confidence 99999999999999999999999999999999999888763
No 125
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=7.8e-08 Score=78.68 Aligned_cols=113 Identities=7% Similarity=-0.090 Sum_probs=76.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTP-G-GGDCMMWSSLLRSC 596 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~ 596 (666)
.+..+...+...|++++|...+++..+. .| +...+..++.+|...|++++|++.+++.. . +.+...+..+...+
T Consensus 18 ~~~~~~~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~ 94 (133)
T 2lni_A 18 MVKNKGNECFQKGDYPQAMKHYTEAIKR---NPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHTTCSHHHHHHHHHHHTT---CTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHc---CCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 4555555566666666666666666532 33 35556666666666666666666666543 2 23566777777778
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCC
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 635 (666)
...|++++|++.++++++.+|.++.++..++.++...|+
T Consensus 95 ~~~~~~~~A~~~~~~~~~~~p~~~~~~~~l~~~~~~~~~ 133 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALDLDSSCKEAADGYQRCMMAQYN 133 (133)
T ss_dssp HHTTCHHHHHHHHHHHHHHCGGGTHHHHHHHHHHHHHTC
T ss_pred HHHhhHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHhcC
Confidence 888888888888888888888888888888888877654
No 126
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=1.2e-07 Score=79.00 Aligned_cols=104 Identities=9% Similarity=0.018 Sum_probs=90.3
Q ss_pred CCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHH
Q 047767 514 LIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMW 589 (666)
Q Consensus 514 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~ 589 (666)
+.|+.. .+..+...+.+.|++++|...|+++... .|+ ...|..+..+|...|++++|++.|++.. ..| +...|
T Consensus 31 l~p~~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~---~P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~P~~~~~~ 107 (151)
T 3gyz_A 31 IPDDMMDDIYSYAYDFYNKGRIEEAEVFFRFLCIY---DFYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALGKNDYTPV 107 (151)
T ss_dssp SCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSSSCCHHH
T ss_pred CCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCCCCcHHH
Confidence 456554 6777888899999999999999999975 565 8889999999999999999999999765 444 67889
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCCCCc
Q 047767 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
..+..++...|++++|+..|++++++.|+++
T Consensus 108 ~~lg~~~~~lg~~~eA~~~~~~al~l~~~~~ 138 (151)
T 3gyz_A 108 FHTGQCQLRLKAPLKAKECFELVIQHSNDEK 138 (151)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHCCCHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCHH
Confidence 9999999999999999999999999999754
No 127
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.73 E-value=2.1e-08 Score=91.51 Aligned_cols=184 Identities=9% Similarity=-0.073 Sum_probs=138.7
Q ss_pred hhCCHHHHHHHhccCCC--C-CHHHHHHH-------HHHHHHcCChhHHHHHHHHHHHcCCCCCHH--------------
Q 047767 464 RCGHIELSHQVFEKIPS--P-NVVCFTSI-------MNGYSRNGMGREALDMLEVMIQRGLIPDKV-------------- 519 (666)
Q Consensus 464 ~~g~~~~A~~~~~~~~~--~-~~~~~~~l-------i~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-------------- 519 (666)
..++...|.+.|.+... | ....|..+ ...+...++..+++..++.-.. +.|+..
T Consensus 18 ~~~d~~~A~~~F~~a~~~dP~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~--l~p~~l~a~~~~~g~y~~~~ 95 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYDESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQ--ISMSTLNARIAIGGLYGDIT 95 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTT--CCGGGGCCEEECCTTTCCCE
T ss_pred cCCCHHHHHHHHHHHHHhChhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhc--CChhhhhhhhccCCcccccc
Confidence 57889999999988873 3 46778777 4566666666666666655444 333321
Q ss_pred --------HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCC----HH
Q 047767 520 --------TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGD----CM 587 (666)
Q Consensus 520 --------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~----~~ 587 (666)
....+...+...|++++|.++|+.+... .|+......+...+.+.|++++|+..|+.....|+ ..
T Consensus 96 ~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~---~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~d~~~~~~ 172 (282)
T 4f3v_A 96 YPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVA---GSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWPDKFLAGA 172 (282)
T ss_dssp EECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCT---TCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCSCHHHHHH
T ss_pred cccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhc---CCchHHHHHHHHHHHHcCCHHHHHHHHHHhhccCCcccHHH
Confidence 2334566788899999999999988753 46533666777889999999999999987664443 23
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHhcC--CC-CcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILMELE--PV-DFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
.+..+..++...|++++|+..|+++.... |. .+.....++.++.+.|+.++|..+|+++.+....
T Consensus 173 a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~ 240 (282)
T 4f3v_A 173 AGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE 240 (282)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc
Confidence 67778888999999999999999998644 54 4567889999999999999999999999876543
No 128
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.73 E-value=7.6e-08 Score=77.97 Aligned_cols=95 Identities=9% Similarity=-0.040 Sum_probs=65.5
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 632 (666)
..+..+...+.+.|++++|++.|++.. ..| +...|..+...+...|++++|+..++++++.+|+++.+|..++.++..
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~ 84 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRAPEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQIA 84 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHH
Confidence 345556666667777777777776543 233 566677777777777777777777777777777777777777777777
Q ss_pred cCCchHHHHHHHHHHhC
Q 047767 633 IGEFEVSMQIRETALAR 649 (666)
Q Consensus 633 ~g~~~~A~~~~~~~~~~ 649 (666)
.|++++|++.+++..+.
T Consensus 85 ~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 85 VKEYASALETLDAARTK 101 (126)
T ss_dssp TTCHHHHHHHHHHHHHH
T ss_pred HhCHHHHHHHHHHHHHh
Confidence 77777777777766553
No 129
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.73 E-value=1.3e-07 Score=76.19 Aligned_cols=114 Identities=13% Similarity=0.136 Sum_probs=86.9
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHH
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSC 596 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~ 596 (666)
..+..+...+...|++++|.+.++++... . +.+...+..++..+.+.|++++|..+++++. .+.+...+..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~-~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALEL-D-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHH-C-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHH
Confidence 45666667777777777777777777754 1 2336667777888888888888888877654 233667788888888
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 634 (666)
...|++++|...++++++..|.++..+..++.++...|
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 125 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQKQG 125 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHC
T ss_pred HHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhcc
Confidence 88999999999999999999999888888888876654
No 130
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.73 E-value=3.9e-08 Score=78.80 Aligned_cols=96 Identities=13% Similarity=-0.009 Sum_probs=84.8
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 632 (666)
..+..+...+.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..++++++++|+++.++..|+.+|..
T Consensus 18 ~~~~~~g~~~~~~g~~~~A~~~~~~al~~~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 18 ENPMEEGLSMLKLANLAEAALAFEAVCQKEPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHTN 97 (121)
T ss_dssp SCHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHH
Confidence 345667888999999999999999765 344 788899999999999999999999999999999999999999999999
Q ss_pred cCCchHHHHHHHHHHhCC
Q 047767 633 IGEFEVSMQIRETALARK 650 (666)
Q Consensus 633 ~g~~~~A~~~~~~~~~~~ 650 (666)
.|++++|+..++++.+..
T Consensus 98 ~g~~~~A~~~~~~al~~~ 115 (121)
T 1hxi_A 98 EHNANAALASLRAWLLSQ 115 (121)
T ss_dssp HHHHHHHHHHHHHHHC--
T ss_pred cCCHHHHHHHHHHHHHhC
Confidence 999999999999887643
No 131
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.72 E-value=1.4e-08 Score=95.57 Aligned_cols=191 Identities=8% Similarity=-0.075 Sum_probs=136.1
Q ss_pred chHHHHHHHHHHHhhCCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC-HHHHHHHHH
Q 047767 451 NIAVSCSLMDAYSRCGHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD-KVTFLCVLA 526 (666)
Q Consensus 451 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~-~~~~~~l~~ 526 (666)
+...+..+...+...|++++|...|++..+ .+...|..+..+|.+.|++++|+..+++..+ +.|+ ...+..+..
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~--~~p~~~~~~~~lg~ 80 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALE--LDGQSVKAHFFLGQ 80 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTT--SCTTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 345566677888899999999999997763 4788899999999999999999999999988 5565 457888889
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCCCc-hHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHH
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDADR-QHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIG 605 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p~~-~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 605 (666)
++...|++++|...|++..+. .|+. ..+...+....+..+...... .......++......+. .+ ..|+.++|
T Consensus 81 ~~~~~g~~~~A~~~~~~al~l---~p~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~i~~~l~-~l-~~~~~~~A 154 (281)
T 2c2l_A 81 CQLEMESYDEAIANLQRAYSL---AKEQRLNFGDDIPSALRIAKKKRWNS-IEERRIHQESELHSYLT-RL-IAAERERE 154 (281)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH---HHHTTCCCCSHHHHHHHHHHHHHHHH-HHHTCCCCCCHHHHHHH-HH-HHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHh---CccchhhHHHHHHHHHHHHHHHHHHH-HHHHHHhhhHHHHHHHH-HH-HHHHHHHH
Confidence 999999999999999998765 2321 111112222222111111111 22223233444433332 22 36899999
Q ss_pred HHHHHHHHhcCCCCcchHHHHHHHHhhc-CCchHHHHHHHHHHhC
Q 047767 606 RRVANILMELEPVDFAVYSQVSNFYSEI-GEFEVSMQIRETALAR 649 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~ 649 (666)
++.++++++.+|++......+...+... +++++|.++|+++.+.
T Consensus 155 ~~~~~~al~~~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~~ 199 (281)
T 2c2l_A 155 LEECQRNHEGHEDDGHIRAQQACIEAKHDKYMADMDELFSQVDEK 199 (281)
T ss_dssp HTTTSGGGTTTSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSCT
T ss_pred HHHHHhhhccccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhcc
Confidence 9999999999999888888888877776 7889999999887653
No 132
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.71 E-value=3.7e-07 Score=81.89 Aligned_cols=131 Identities=11% Similarity=-0.088 Sum_probs=101.2
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCc
Q 047767 454 VSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM 533 (666)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~ 533 (666)
.+..+...+...|++++|...|++..+++...|..+..++...|++++|+..+++..+.. +.+...+..+..++...|+
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~~~~~ 86 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQDPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYYQTEK 86 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSSSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHcCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHccc
Confidence 344566777888999999999988888888888888888999999999999998888742 2344578888888888999
Q ss_pred HHHHHHHHHHhHHhhCC-------------CCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC
Q 047767 534 VKEGQLVFNSMKSVYGI-------------DAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGGD 585 (666)
Q Consensus 534 ~~~a~~~~~~~~~~~~~-------------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~ 585 (666)
+++|.+.++++.+...- .|+ ...+..+..+|...|++++|.+.+++.. ..|+
T Consensus 87 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~ 153 (213)
T 1hh8_A 87 YDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMKSE 153 (213)
T ss_dssp HHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcCcc
Confidence 99999999888864111 111 2678888888999999999998888654 4454
No 133
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.71 E-value=3.2e-08 Score=82.65 Aligned_cols=115 Identities=11% Similarity=0.038 Sum_probs=92.6
Q ss_pred HHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 047767 505 MLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTP- 581 (666)
Q Consensus 505 ~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~- 581 (666)
.++++.+ +.|+.. .+..+...+...|++++|...|+.+... .| +...|..+..+|...|++++|++.+++..
T Consensus 9 ~~~~al~--~~p~~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 83 (148)
T 2vgx_A 9 TIAMLNE--ISSDTLEQLYSLAFNQYQSGXYEDAHXVFQALCVL---DHYDSRFFLGLGACRQAMGQYDLAIHSYSYGAV 83 (148)
T ss_dssp SHHHHTT--CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHc--CCHhhHHHHHHHHHHHHHcCChHHHHHHHHHHHHc---CcccHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 3444444 456544 6677778888999999999999998865 45 47788889999999999999999998765
Q ss_pred CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHH
Q 047767 582 GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 582 ~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~ 624 (666)
..| +...|..+..++...|++++|+..|+++++..|+++....
T Consensus 84 l~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~ 127 (148)
T 2vgx_A 84 MDIXEPRFPFHAAECLLQXGELAEAESGLFLAQELIANXPEFXE 127 (148)
T ss_dssp HSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTCGGGHH
T ss_pred cCCCCchHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCCCcchH
Confidence 334 6778888999999999999999999999999998876644
No 134
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.66 E-value=7.4e-08 Score=77.99 Aligned_cols=93 Identities=9% Similarity=0.001 Sum_probs=59.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcc-------hHHHH
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFA-------VYSQV 626 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-------~~~~l 626 (666)
.+..++..+.+.|++++|++.|++.. ..| +...|..+..+|...|++++|++.++++++++|+++. +|..+
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~l 89 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELDPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSRA 89 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHHH
Confidence 34556666666666666666666543 233 5566666666677777777777777777766665432 45566
Q ss_pred HHHHhhcCCchHHHHHHHHHHh
Q 047767 627 SNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 627 ~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
|.++...|++++|++.|++..+
T Consensus 90 g~~~~~~~~~~~A~~~~~kal~ 111 (127)
T 4gcn_A 90 GNAFQKQNDLSLAVQWFHRSLS 111 (127)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHh
Confidence 6666677777777777766654
No 135
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.66 E-value=1.9e-07 Score=76.91 Aligned_cols=96 Identities=7% Similarity=-0.063 Sum_probs=64.1
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..+...+...|++++|+..+++.. ..| +...|..+...+...|++++|+..++++++.+|+++.++..++.+|.
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~ 88 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRNPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLGQCQL 88 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhCcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHHHHHH
Confidence 5556666666666667766666666543 223 45666666666777777777777777777777777777777777777
Q ss_pred hcCCchHHHHHHHHHHhC
Q 047767 632 EIGEFEVSMQIRETALAR 649 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~~ 649 (666)
..|++++|+..|+++.+.
T Consensus 89 ~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 89 EMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHHHHHHHHHH
Confidence 777777777777666543
No 136
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.65 E-value=1.9e-08 Score=89.14 Aligned_cols=96 Identities=7% Similarity=-0.075 Sum_probs=75.0
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP-G-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 632 (666)
..+..+..+|.+.|++++|+..+++.. . +.+...+..+..++...|++++|+..++++++.+|+++.++..++.++..
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 168 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKIDKNNVKALYKLGVANMYFGFLEEAKENLYKAASLNPNNLDIRNSYELCVNK 168 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHH
Confidence 567888889999999999999988765 3 33678888999999999999999999999999999999999999999999
Q ss_pred cCCchHHH-HHHHHHHhCC
Q 047767 633 IGEFEVSM-QIRETALARK 650 (666)
Q Consensus 633 ~g~~~~A~-~~~~~~~~~~ 650 (666)
.|+.+++. ..++.+-..|
T Consensus 169 ~~~~~~~~~~~~~~~f~~~ 187 (198)
T 2fbn_A 169 LKEARKKDKLTFGGMFDKG 187 (198)
T ss_dssp HHHHHC-------------
T ss_pred HHHHHHHHHHHHHHHhccc
Confidence 99888887 5566554433
No 137
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.65 E-value=3.9e-06 Score=78.60 Aligned_cols=148 Identities=9% Similarity=0.064 Sum_probs=69.6
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHH--HHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCC-----
Q 047767 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVK--EGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI----- 569 (666)
Q Consensus 497 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~--~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~----- 569 (666)
+++++++.+++.+.+.. +-|...|+.-...+.+.|.++ +++++++++.+. . .-+...|+.-..++.+.|+
T Consensus 124 ~~~~~EL~~~~~~l~~~-pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~-d-~~N~sAW~~R~~ll~~l~~~~~~~ 200 (306)
T 3dra_A 124 FDPYREFDILEAMLSSD-PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDT-D-LKNNSAWSHRFFLLFSKKHLATDN 200 (306)
T ss_dssp CCTHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHH-C-TTCHHHHHHHHHHHHSSGGGCCHH
T ss_pred CCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHh-C-CCCHHHHHHHHHHHHhccccchhh
Confidence 44555555555555521 113334444443444444444 555555555543 1 1224444444444444443
Q ss_pred -hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCCh-HHHHHHHHHHHhcC---CCCcchHHHHHHHHhhcCCchHHHHH
Q 047767 570 -LDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNE-IIGRRVANILMELE---PVDFAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 570 -~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~---p~~~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
++++++.++++. ..| |...|+.+...+.+.|+. +....+.+++.+.+ |.++.++..|+.+|.+.|+.++|+++
T Consensus 201 ~~~eEl~~~~~aI~~~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~ 280 (306)
T 3dra_A 201 TIDEELNYVKDKIVKCPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTV 280 (306)
T ss_dssp HHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHhCCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHH
Confidence 455555554433 222 455555555555444442 22334444444443 55555555555555555555555555
Q ss_pred HHHHH
Q 047767 643 RETAL 647 (666)
Q Consensus 643 ~~~~~ 647 (666)
++.+.
T Consensus 281 ~~~l~ 285 (306)
T 3dra_A 281 YDLLK 285 (306)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55554
No 138
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.64 E-value=1.6e-07 Score=80.12 Aligned_cols=110 Identities=10% Similarity=-0.101 Sum_probs=93.7
Q ss_pred HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHH
Q 047767 518 KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLR 594 (666)
Q Consensus 518 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~ 594 (666)
...+..+...+...|++++|++.|++..+. .| +...|..+..+|.+.|++++|+..+++.. ..| +...|..+..
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~ 87 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSI---APANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHH
Confidence 346788888899999999999999999875 45 47888999999999999999999998765 344 6788999999
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 047767 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630 (666)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 630 (666)
++...|++++|+..|+++++++|+++..+...+...
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~ 123 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAEGNGGSDAMKRGLET 123 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHSSSCCHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhCCCchHHHHHHHHHH
Confidence 999999999999999999999999988776665443
No 139
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.63 E-value=1.7e-07 Score=83.95 Aligned_cols=142 Identities=10% Similarity=-0.007 Sum_probs=122.7
Q ss_pred hHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcC----ChHHHHH
Q 047767 500 REALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG----ILDKAEE 575 (666)
Q Consensus 500 ~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g----~~~~A~~ 575 (666)
.+|++.|++..+.| +...+..+...+...+++++|.++|++..+. + ++..+..|...|.. + ++++|++
T Consensus 3 ~eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~-g---~~~a~~~lg~~y~~-~g~~~~~~~A~~ 74 (212)
T 3rjv_A 3 TEPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ-G---DGDALALLAQLKIR-NPQQADYPQARQ 74 (212)
T ss_dssp -CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT-T---CHHHHHHHHHHTTS-STTSCCHHHHHH
T ss_pred chHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc-C---CHHHHHHHHHHHHc-CCCCCCHHHHHH
Confidence 35778888888864 5667777888888899999999999999875 3 57788889999988 6 8999999
Q ss_pred HHHhCCCCCCHHHHHHHHHHHHh----hCChHHHHHHHHHHHhcCCC--CcchHHHHHHHHhh----cCCchHHHHHHHH
Q 047767 576 LLQQTPGGGDCMMWSSLLRSCRV----HGNEIIGRRVANILMELEPV--DFAVYSQVSNFYSE----IGEFEVSMQIRET 645 (666)
Q Consensus 576 ~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p~--~~~~~~~l~~~~~~----~g~~~~A~~~~~~ 645 (666)
+|++.....+...+..|...|.. .+++++|++.|+++.+..|. ++.++..|+.+|.. .+++++|+++|++
T Consensus 75 ~~~~A~~~g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~ 154 (212)
T 3rjv_A 75 LAEKAVEAGSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYFKG 154 (212)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHHHH
Confidence 99988766788888899988877 78999999999999999883 48899999999999 8899999999999
Q ss_pred HHhC
Q 047767 646 ALAR 649 (666)
Q Consensus 646 ~~~~ 649 (666)
..+.
T Consensus 155 A~~~ 158 (212)
T 3rjv_A 155 SSSL 158 (212)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 9876
No 140
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.62 E-value=2.8e-07 Score=73.37 Aligned_cols=92 Identities=14% Similarity=0.053 Sum_probs=44.4
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC
Q 047767 557 YSCMIDMLGRAGILDKAEELLQQTP-G-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIG 634 (666)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g 634 (666)
+..++..+...|++++|...+++.. . +.+...+..+...+...|++++|...++++++..|.++.++..++.++...|
T Consensus 7 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~ 86 (118)
T 1elw_A 7 LKEKGNKALSVGNIDDALQCYSEAIKLDPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAALEFLN 86 (118)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHcccHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHHHHHh
Confidence 3444444444455555554444432 1 1234444444444555555555555555555555555555555555555555
Q ss_pred CchHHHHHHHHHHh
Q 047767 635 EFEVSMQIRETALA 648 (666)
Q Consensus 635 ~~~~A~~~~~~~~~ 648 (666)
++++|.+.+++..+
T Consensus 87 ~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 87 RFEEAKRTYEEGLK 100 (118)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHH
Confidence 55555555554443
No 141
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.61 E-value=9.1e-08 Score=79.40 Aligned_cols=112 Identities=10% Similarity=-0.029 Sum_probs=86.6
Q ss_pred CCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHH
Q 047767 514 LIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMW 589 (666)
Q Consensus 514 ~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~ 589 (666)
+.|+.. .+..+...+...|++++|...|+.+... .|+ ...|..+..+|.+.|++++|+..+++.. ..| +...|
T Consensus 13 ~~p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~ 89 (142)
T 2xcb_A 13 LSEDTLEQLYALGFNQYQAGKWDDAQKIFQALCML---DHYDARYFLGLGACRQSLGLYEQALQSYSYGALMDINEPRFP 89 (142)
T ss_dssp CCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTHHH
T ss_pred CCHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCcHHH
Confidence 445443 4556667778888888888888888765 454 7778888888899999999998888765 334 66778
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
..+..++...|++++|+..++++++..|+++........
T Consensus 90 ~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~ 128 (142)
T 2xcb_A 90 FHAAECHLQLGDLDGAESGFYSARALAAAQPAHEALAAR 128 (142)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHTCGGGHHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhCCCCcchHHHHHH
Confidence 888888999999999999999999999988766554433
No 142
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.58 E-value=7.3e-07 Score=79.17 Aligned_cols=152 Identities=9% Similarity=-0.046 Sum_probs=82.1
Q ss_pred HcCChhHHHHHHHHHHHcCCCC-CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhh---CCCCC-chHHHHHHHHHHhcCC
Q 047767 495 RNGMGREALDMLEVMIQRGLIP-DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVY---GIDAD-RQHYSCMIDMLGRAGI 569 (666)
Q Consensus 495 ~~~~~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~ 569 (666)
..|++++|.++++.+.. .++ ....+..+...+...|++++|...+++..... +..|. ...+..+...|...|+
T Consensus 4 ~~g~~~~A~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 4 EAHDYALAERQAQALLA--HPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ---CHHHHHHHHHHHHT--STTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred ccccHHHHHHHHHHhcC--ChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 34555555553333322 111 22345555555556666666666665554421 11111 3455566666666666
Q ss_pred hHHHHHHHHhCC----CCC-C----HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC--CC----cchHHHHHHHHhhcC
Q 047767 570 LDKAEELLQQTP----GGG-D----CMMWSSLLRSCRVHGNEIIGRRVANILMELEP--VD----FAVYSQVSNFYSEIG 634 (666)
Q Consensus 570 ~~~A~~~~~~~~----~~~-~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p--~~----~~~~~~l~~~~~~~g 634 (666)
+++|.+.+++.. ..+ + ...+..+...+...|++++|...++++++..+ .+ ..++..++.++...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 666666665432 111 1 23455666667777777777777777765322 11 223467777777777
Q ss_pred CchHHHHHHHHHHh
Q 047767 635 EFEVSMQIRETALA 648 (666)
Q Consensus 635 ~~~~A~~~~~~~~~ 648 (666)
++++|.+.+++..+
T Consensus 162 ~~~~A~~~~~~al~ 175 (203)
T 3gw4_A 162 NLLEAQQHWLRARD 175 (203)
T ss_dssp CHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHH
Confidence 77777777776653
No 143
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.58 E-value=3e-07 Score=75.13 Aligned_cols=97 Identities=11% Similarity=0.067 Sum_probs=88.6
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..++..+.+.|++++|++.+++.. ..| +...+..+...+...|++++|+..++++++..|.++.++..++.+|.
T Consensus 16 ~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~ 95 (133)
T 2lni_A 16 ALMVKNKGNECFQKGDYPQAMKHYTEAIKRNPKDAKLYSNRAACYTKLLEFQLALKDCEECIQLEPTFIKGYTRKAAALE 95 (133)
T ss_dssp HHHHHHHHHHHHHTTCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCCchHHHHHHHHHHH
Confidence 6778889999999999999999999754 344 77889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCC
Q 047767 632 EIGEFEVSMQIRETALARK 650 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~~~ 650 (666)
..|++++|++.+++..+..
T Consensus 96 ~~~~~~~A~~~~~~~~~~~ 114 (133)
T 2lni_A 96 AMKDYTKAMDVYQKALDLD 114 (133)
T ss_dssp HTTCHHHHHHHHHHHHHHC
T ss_pred HHhhHHHHHHHHHHHHHhC
Confidence 9999999999999887654
No 144
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.56 E-value=4.8e-07 Score=72.78 Aligned_cols=98 Identities=16% Similarity=0.235 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..++..+...|++++|.++++++. .+.+...+..+...+...|++++|+..++++++..|.++.++..++.+|.
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~la~~~~ 88 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYY 88 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCcCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHH
Confidence 5678889999999999999999998765 33467888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 047767 632 EIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~~~~ 651 (666)
..|++++|.+.++++.+...
T Consensus 89 ~~~~~~~A~~~~~~~~~~~~ 108 (125)
T 1na0_A 89 KQGDYDEAIEYYQKALELDP 108 (125)
T ss_dssp HTTCHHHHHHHHHHHHHHCT
T ss_pred HhcCHHHHHHHHHHHHHhCC
Confidence 99999999999999877543
No 145
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.56 E-value=0.00011 Score=74.77 Aligned_cols=369 Identities=7% Similarity=-0.002 Sum_probs=166.4
Q ss_pred CC-ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCC-hhHHH
Q 047767 88 FR-HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP-SVRAL 165 (666)
Q Consensus 88 ~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~-~~~a~ 165 (666)
.| +...|..+|+.+... -|. |+++.+..+|++.... .|+...|...+....+.++ .+...
T Consensus 7 ~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i~ 68 (493)
T 2uy1_A 7 MGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKLY 68 (493)
T ss_dssp -----CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CTH
T ss_pred cCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHHH
Confidence 45 377777777777653 233 7888888888888764 4677777777776666553 23334
Q ss_pred HhhccCCC------CCcccHHHHHHHHH----hcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHH
Q 047767 166 DLFDELPE------RNLATWNLMLRAFC----ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHS 235 (666)
Q Consensus 166 ~~~~~~~~------~~~~~~~~li~~~~----~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~ 235 (666)
.+|+.... .+...|...+.-+. ..++.+.+..+|++........-...|..... +....+...+..++.
T Consensus 69 ~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~-fE~~~~~~~~~~~~~ 147 (493)
T 2uy1_A 69 EVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFEN-FELELNKITGKKIVG 147 (493)
T ss_dssp HHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHH-HHHHHCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHH-HHHHhccccHHHHHH
Confidence 44443221 23344555554332 23455666667766665211111111111111 111111222222221
Q ss_pred HHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC----CCChhhHHHHHHHHHcCC--C-----hHHHHHHHHHh
Q 047767 236 HVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP----VDDVISWNSIVSIYADYD--L-----IFDALELFFRM 304 (666)
Q Consensus 236 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~----~~~~~~~~~li~~~~~~g--~-----~~~a~~~~~~m 304 (666)
... +.+..|..+++.+. ..+...|...+.--...+ - .+.+..+|+++
T Consensus 148 ~~~----------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~ye~a 205 (493)
T 2uy1_A 148 DTL----------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIHNYI 205 (493)
T ss_dssp HHH----------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHH
T ss_pred HHh----------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHHHHH
Confidence 111 01111221111111 112334544444322211 1 23456677776
Q ss_pred HhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHH-HHHhccCC--C----
Q 047767 305 QLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESS-VAVFESAP--G---- 377 (666)
Q Consensus 305 ~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~--~---- 377 (666)
+... +.++..+...+..+.+.|+.+.|..+++..... |.+..++...... .+.++. ..+.+... .
T Consensus 206 l~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~y~~~----~e~~~~~~~l~~~~~~~~~~~~ 277 (493)
T 2uy1_A 206 LDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLYYGLV----MDEEAVYGDLKRKYSMGEAESA 277 (493)
T ss_dssp HHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHHHHHH----TTCTHHHHHHHHHTC-------
T ss_pred HHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHHHHhh----cchhHHHHHHHHHHHhhccchh
Confidence 6542 334555666666667778888888888888777 3244333322221 111111 11111100 0
Q ss_pred ---C---CcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCc
Q 047767 378 ---R---SLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESN 451 (666)
Q Consensus 378 ---~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 451 (666)
+ ....|...+....+.++.+.|..+|++. ... ..+...|...... -....++.+.|..+++...+.. +.+
T Consensus 278 ~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~l-E~~~~~d~~~ar~ife~al~~~-~~~ 353 (493)
T 2uy1_A 278 EKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFI-EYYATGSRATPYNIFSSGLLKH-PDS 353 (493)
T ss_dssp ---CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHH-HHHHHCCSHHHHHHHHHHHHHC-TTC
T ss_pred hhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHH-HHHHCCChHHHHHHHHHHHHHC-CCC
Confidence 0 1123444555555566677777777766 211 1222233211111 0111224666666666655542 222
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHH
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMI 510 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~ 510 (666)
+..+...++...+.|+.+.|..+|+.+. .....|...+.--...|+.+.+.++++++.
T Consensus 354 ~~~~~~yid~e~~~~~~~~aR~l~er~~-k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~ 411 (493)
T 2uy1_A 354 TLLKEEFFLFLLRIGDEENARALFKRLE-KTSRMWDSMIEYEFMVGSMELFRELVDQKM 411 (493)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHSC-CBHHHHHHHHHHHHHHSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHH-HHHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 3334444555555566666666666553 234445555544444555555555555544
No 146
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.55 E-value=6e-07 Score=77.72 Aligned_cols=124 Identities=5% Similarity=0.046 Sum_probs=103.5
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhhCCh
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRS-CRVHGNE 602 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~ 602 (666)
.+...|++++|...++..... .| +...+..++.+|...|++++|+..+++.. ..| +...+..+... +...|++
T Consensus 19 ~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~la~~l~~~~~~~ 95 (177)
T 2e2e_A 19 QFASQQNPEAQLQALQDKIRA---NPQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLRGENAELYAALATVLYYQASQH 95 (177)
T ss_dssp CCC-----CCCCHHHHHHHHH---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred hhhhccCHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhcCCc
Confidence 356788999999999998875 34 47889999999999999999999999765 333 67788888888 7788998
Q ss_pred --HHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCc
Q 047767 603 --IIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653 (666)
Q Consensus 603 --~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 653 (666)
++|+..++++++.+|+++.++..++.+|...|++++|...++++.+.....
T Consensus 96 ~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~~ 148 (177)
T 2e2e_A 96 MTAQTRAMIDKALALDSNEITALMLLASDAFMQANYAQAIELWQKVMDLNSPR 148 (177)
T ss_dssp CCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCTT
T ss_pred chHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhCCCC
Confidence 999999999999999999999999999999999999999999998766543
No 147
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.54 E-value=1.3e-06 Score=72.79 Aligned_cols=111 Identities=13% Similarity=-0.036 Sum_probs=68.8
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHH
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSL 592 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l 592 (666)
..+..+...+...|++++|.+.|++..+ ..|+ ...+..+..+|...|++++|+..+++.. ..| +...|..+
T Consensus 29 ~~~~~~a~~~~~~~~~~~A~~~~~~a~~---~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~ 105 (148)
T 2dba_A 29 EQLRKEGNELFKCGDYGGALAAYTQALG---LDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRR 105 (148)
T ss_dssp HHHHHHHHHHHTTTCHHHHHHHHHHHHT---SCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHH
T ss_pred HHHHHHHHHHHHhCCHHHHHHHHHHHHH---HcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHH
Confidence 3455555555556666666666665553 2344 4555566666666666666666665543 223 45566667
Q ss_pred HHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh
Q 047767 593 LRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632 (666)
Q Consensus 593 ~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 632 (666)
...+...|++++|...++++++.+|+++.++..+..+...
T Consensus 106 a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~ 145 (148)
T 2dba_A 106 SQALEKLGRLDQAVLDLQRCVSLEPKNKVFQEALRNISGP 145 (148)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHHcCCCcHHHHHHHHHHHhh
Confidence 7777777777777777777777777777666666665543
No 148
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.54 E-value=5.6e-07 Score=76.77 Aligned_cols=95 Identities=11% Similarity=0.062 Sum_probs=56.4
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..+...+.+.|++++|++.|++.. ..| +...|..+...+...|++++|+..++++++++|+++.+|..++.+|.
T Consensus 11 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~ 90 (164)
T 3sz7_A 11 SDKLKSEGNAAMARKEYSKAIDLYTQALSIAPANPIYLSNRAAAYSASGQHEKAAEDAELATVVDPKYSKAWSRLGLARF 90 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4445555566666666666666665543 223 45555566666666666666666666666666666666666666666
Q ss_pred hcCCchHHHHHHHHHHh
Q 047767 632 EIGEFEVSMQIRETALA 648 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~ 648 (666)
..|++++|++.|++..+
T Consensus 91 ~~g~~~~A~~~~~~al~ 107 (164)
T 3sz7_A 91 DMADYKGAKEAYEKGIE 107 (164)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HccCHHHHHHHHHHHHH
Confidence 66666666666665544
No 149
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=1e-06 Score=69.93 Aligned_cols=110 Identities=11% Similarity=-0.068 Sum_probs=86.3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSC 596 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 596 (666)
..+..+...+...|++++|...+++.... .+.+...+..++.++...|++++|...+++.. ..| +...+..+...+
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKL--DPHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLKPDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHH--CCCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhCcccHHHHHHHHHHH
Confidence 35566666777788888888888887764 12246777788888888888888888887654 233 677888888899
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY 630 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~ 630 (666)
...|++++|.+.++++++.+|+++..+..++.+.
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~ 116 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHEANNPQLKEGLQNME 116 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHHcCCCCHHHHHHHHHhh
Confidence 9999999999999999999999988888877664
No 150
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.53 E-value=5.3e-07 Score=72.87 Aligned_cols=109 Identities=5% Similarity=-0.155 Sum_probs=87.6
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSC 596 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~ 596 (666)
.+..+...+.+.|++++|...|++..+. .|+ ...|..+..+|.+.|++++|+..+++.. ..| +...|..+..++
T Consensus 6 ~~~~~g~~~~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 6 EARLEGKEYFTKSDWPNAVKAYTEMIKR---APEDARGYSNRAAALAKLMSFPEAIADCNKAIEKDPNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHh---CCCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCcHHHHHHHHHHH
Confidence 5666677778888888888888888765 344 7788888888889999999998888755 344 677888899999
Q ss_pred HhhCChHHHHHHHHHHHhcC------CCCcchHHHHHHHHh
Q 047767 597 RVHGNEIIGRRVANILMELE------PVDFAVYSQVSNFYS 631 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~------p~~~~~~~~l~~~~~ 631 (666)
...|++++|+..++++++.+ |.++.++..+..+..
T Consensus 83 ~~~~~~~~A~~~~~~al~~~p~~~~~p~~~~~~~~l~~~~~ 123 (126)
T 3upv_A 83 IAVKEYASALETLDAARTKDAEVNNGSSAREIDQLYYKASQ 123 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHHHTTTTHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHhCcccCCchhHHHHHHHHHHHHH
Confidence 99999999999999999999 888777777766553
No 151
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.53 E-value=4.4e-06 Score=79.09 Aligned_cols=158 Identities=7% Similarity=-0.115 Sum_probs=121.1
Q ss_pred HHHHHHhhCCHHHHHHHhccCCC-----CC----HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCC-CC----HHHHHH
Q 047767 458 LMDAYSRCGHIELSHQVFEKIPS-----PN----VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLI-PD----KVTFLC 523 (666)
Q Consensus 458 l~~~~~~~g~~~~A~~~~~~~~~-----~~----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~-p~----~~~~~~ 523 (666)
.+..+...|++++|...+++..+ ++ ...+..+...+...+++++|+..+++..+.... ++ ..+++.
T Consensus 81 ~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~~ 160 (293)
T 3u3w_A 81 QVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIENA 160 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHHH
T ss_pred HHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHHH
Confidence 46678899999999999987653 22 123344666777788999999999999984222 22 226888
Q ss_pred HHHHhcCCCcHHHHHHHHHHhHHhhC----CCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHHHHH
Q 047767 524 VLAGCNHSGMVKEGQLVFNSMKSVYG----IDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-------GGG-DCMMWS 590 (666)
Q Consensus 524 l~~~~~~~g~~~~a~~~~~~~~~~~~----~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~ 590 (666)
+...|...|++++|...++++.+... ..+. ..++..++.+|.+.|++++|++.+++.. ..+ -..+|.
T Consensus 161 lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~~ 240 (293)
T 3u3w_A 161 IANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLYY 240 (293)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHHH
Confidence 99999999999999999999985321 1112 4578899999999999999999988654 112 256888
Q ss_pred HHHHHHHhhCC-hHHHHHHHHHHHhc
Q 047767 591 SLLRSCRVHGN-EIIGRRVANILMEL 615 (666)
Q Consensus 591 ~l~~~~~~~~~-~~~a~~~~~~~~~~ 615 (666)
.++..+...|+ +++|.+.+++++++
T Consensus 241 ~lg~~~~~~g~~~~~A~~~~~~Al~i 266 (293)
T 3u3w_A 241 QRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCcHHHHHHHHHHHHHH
Confidence 89999999995 69999999998873
No 152
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.53 E-value=3e-05 Score=72.65 Aligned_cols=224 Identities=9% Similarity=-0.017 Sum_probs=158.7
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHH-HHHhchhhhhccc--chhhHHHHHHHHHHhCCCCchHHHHHHHHHH----Hhh---
Q 047767 396 IKDAVEMFGFMVDEGIGLDEVTL-STTLKALSVSASA--NLGSCRLLHCCAIKSGFESNIAVSCSLMDAY----SRC--- 465 (666)
Q Consensus 396 ~~~a~~~~~~m~~~~~~p~~~~~-~~ll~~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~--- 465 (666)
.++|+.+++.+... .|+..|. +.--.. ....+ +++.+..+++.+...+.+ +..+|+.-...+ ...
T Consensus 49 s~~aL~~t~~~L~~--nP~~~taWn~R~~~--L~~l~~~~~~eeL~~~~~~L~~nPk-~y~aW~~R~~iL~~~~~~l~~~ 123 (306)
T 3dra_A 49 SERALHITELGINE--LASHYTIWIYRFNI--LKNLPNRNLYDELDWCEEIALDNEK-NYQIWNYRQLIIGQIMELNNND 123 (306)
T ss_dssp SHHHHHHHHHHHHH--CTTCHHHHHHHHHH--HHTCTTSCHHHHHHHHHHHHHHCTT-CCHHHHHHHHHHHHHHHHTTTC
T ss_pred CHHHHHHHHHHHHH--CcHHHHHHHHHHHH--HHHcccccHHHHHHHHHHHHHHCcc-cHHHHHHHHHHHHHHHHhcccc
Confidence 35677777777664 4554442 221111 33344 677777777777665432 233333222222 344
Q ss_pred CCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCChh--HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCc------H
Q 047767 466 GHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGMGR--EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM------V 534 (666)
Q Consensus 466 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~~~--~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~------~ 534 (666)
++++++..+++.+.+ .+...|+.-.-.+.+.|+++ ++++.++++++.. .-|...|+.-...+.+.+. +
T Consensus 124 ~~~~~EL~~~~~~l~~~pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 124 FDPYREFDILEAMLSSDPKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp CCTHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 788999999988874 57788888888888889988 9999999999954 2355577766666666666 8
Q ss_pred HHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHH-HHHHHHhCCC-----CCCHHHHHHHHHHHHhhCChHHHHH
Q 047767 535 KEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDK-AEELLQQTPG-----GGDCMMWSSLLRSCRVHGNEIIGRR 607 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~-A~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~ 607 (666)
+++++.++.+... .|+ ...|+.+...+.+.|+..+ +.++++++.. ..+...+..++.++.+.|+.++|++
T Consensus 203 ~eEl~~~~~aI~~---~p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~ 279 (306)
T 3dra_A 203 DEELNYVKDKIVK---CPQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRT 279 (306)
T ss_dssp HHHHHHHHHHHHH---CSSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHh---CCCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHH
Confidence 9999999999875 455 8889899999999888544 5567776552 2367888889999999999999999
Q ss_pred HHHHHHh-cCCCCcchHHHHHH
Q 047767 608 VANILME-LEPVDFAVYSQVSN 628 (666)
Q Consensus 608 ~~~~~~~-~~p~~~~~~~~l~~ 628 (666)
+++.+.+ .+|-....|...+.
T Consensus 280 ~~~~l~~~~Dpir~~yW~~~~~ 301 (306)
T 3dra_A 280 VYDLLKSKYNPIRSNFWDYQIS 301 (306)
T ss_dssp HHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHHhccChHHHHHHHHHHh
Confidence 9999997 79988777765554
No 153
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.51 E-value=3.4e-07 Score=75.16 Aligned_cols=62 Identities=6% Similarity=-0.061 Sum_probs=53.4
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHhc-------CCCCcchH----HHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILMEL-------EPVDFAVY----SQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~p~~~~~~----~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
..|..+..++...|++++|+..+++++++ +|+++..| +..|.++...|++++|+..|++..+
T Consensus 58 ~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 58 FCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 37888888888888888888888888888 99888888 8999999999999999999988765
No 154
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.50 E-value=8.1e-07 Score=74.09 Aligned_cols=99 Identities=9% Similarity=-0.023 Sum_probs=89.0
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHhCC-CCCC----HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 047767 553 DRQHYSCMIDMLGRAGILDKAEELLQQTP-GGGD----CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627 (666)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 627 (666)
+...+..+...+...|++++|++.+++.. ..|+ ...|..+...+...|++++|+..++++++..|+++.++..++
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a 106 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLDATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKDGGDVKALYRRS 106 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHcccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhCccCHHHHHHHH
Confidence 36778889999999999999999999754 5565 678888899999999999999999999999999999999999
Q ss_pred HHHhhcCCchHHHHHHHHHHhCCC
Q 047767 628 NFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 628 ~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
.+|...|++++|.+.+++..+...
T Consensus 107 ~~~~~~~~~~~A~~~~~~al~~~p 130 (148)
T 2dba_A 107 QALEKLGRLDQAVLDLQRCVSLEP 130 (148)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHCS
T ss_pred HHHHHcCCHHHHHHHHHHHHHcCC
Confidence 999999999999999999887543
No 155
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.50 E-value=8e-07 Score=81.18 Aligned_cols=138 Identities=12% Similarity=-0.014 Sum_probs=102.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC--chHHHHHHHH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD--RQHYSCMIDM 563 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~--~~~~~~l~~~ 563 (666)
+-.+...+...|++++|.++|+.+.. ..|+......+...+.+.+++++|+..|+..... . .|. ...+..+..+
T Consensus 105 ~LayA~~L~~~g~y~eA~~~l~~~~~--~~p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~-~-d~~~~~~a~~~LG~a 180 (282)
T 4f3v_A 105 TMGFAACEAAQGNYADAMEALEAAPV--AGSEHLVAWMKAVVYGAAERWTDVIDQVKSAGKW-P-DKFLAGAAGVAHGVA 180 (282)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHTSSCC--TTCHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGC-S-CHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHh--cCCchHHHHHHHHHHHHcCCHHHHHHHHHHhhcc-C-CcccHHHHHHHHHHH
Confidence 33456667788888888888888776 3465555555556788889999999999855432 1 111 2467788899
Q ss_pred HHhcCChHHHHHHHHhCCCC---C--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 564 LGRAGILDKAEELLQQTPGG---G--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~~~~~~---~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
+.+.|++++|+..|++.... | ....+.....++.+.|+.++|...|+++.+.+|+ +.++..|..
T Consensus 181 l~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~~P~-~~~~~aL~~ 249 (282)
T 4f3v_A 181 AANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTTHPE-PKVAAALKD 249 (282)
T ss_dssp HHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSCC-HHHHHHHHC
T ss_pred HHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc-HHHHHHHhC
Confidence 99999999999999977422 3 2346677788889999999999999999999998 776666644
No 156
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.49 E-value=9.7e-07 Score=71.65 Aligned_cols=98 Identities=8% Similarity=0.046 Sum_probs=88.3
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..++..+...|++++|++.+++.. .+.+...+..+...+...|++++|+..++++++..|+++.++..++.++.
T Consensus 12 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (131)
T 2vyi_A 12 AERLKTEGNEQMKVENFEAAVHFYGKAIELNPANAVYFCNRAAAYSKLGNYAGAVQDCERAICIDPAYSKAYGRMGLALS 91 (131)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHccCHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcCccCHHHHHHHHHHHH
Confidence 5677888999999999999999999765 33477888899999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 047767 632 EIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~~~~ 651 (666)
..|++++|.+.+++..+...
T Consensus 92 ~~~~~~~A~~~~~~~~~~~p 111 (131)
T 2vyi_A 92 SLNKHVEAVAYYKKALELDP 111 (131)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhCCHHHHHHHHHHHHhcCc
Confidence 99999999999999887543
No 157
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.48 E-value=1.8e-06 Score=81.87 Aligned_cols=163 Identities=6% Similarity=-0.166 Sum_probs=122.7
Q ss_pred HHHHHHHHHHHhhCCHHHHHHHhccCCC---CCH------HHHHHHHHHHHHcCChhHHHHHHHHHHHcCC---CCC--H
Q 047767 453 AVSCSLMDAYSRCGHIELSHQVFEKIPS---PNV------VCFTSIMNGYSRNGMGREALDMLEVMIQRGL---IPD--K 518 (666)
Q Consensus 453 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~---~~~------~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~---~p~--~ 518 (666)
..+...+..+...|++++|.+.+.+..+ ... ..+..+...+...|++++|+..+++..+... .+. .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 3444567778899999999998875432 111 2344466667888999999999999886321 222 3
Q ss_pred HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-----chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-------C
Q 047767 519 VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-----RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-------D 585 (666)
Q Consensus 519 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-----~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-------~ 585 (666)
.+++.+...|...|++++|...++++.+.....|+ ..++..++.+|...|++++|++.+++.. ..+ -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47888999999999999999999998843222333 2588899999999999999999998654 111 2
Q ss_pred HHHHHHHHHHHHhhCChHHH-HHHHHHHHhc
Q 047767 586 CMMWSSLLRSCRVHGNEIIG-RRVANILMEL 615 (666)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~ 615 (666)
..+|..++..+...|++++| ...+++++++
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~~ 266 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASFF 266 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHHH
Confidence 56888899999999999999 7889988763
No 158
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.48 E-value=4.9e-07 Score=73.44 Aligned_cols=93 Identities=11% Similarity=-0.039 Sum_probs=43.2
Q ss_pred HHhcCCCcHHHHHHHHHHhHHhhCCCCC-c---hHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C---HHHHHHHHHHH
Q 047767 526 AGCNHSGMVKEGQLVFNSMKSVYGIDAD-R---QHYSCMIDMLGRAGILDKAEELLQQTP-GGG-D---CMMWSSLLRSC 596 (666)
Q Consensus 526 ~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~---~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~---~~~~~~l~~~~ 596 (666)
..+...|++++|...++.+.+. .|+ . ..+..++.+|.+.|++++|+..++++. ..| + ...+..+...+
T Consensus 10 ~~~~~~~~~~~A~~~~~~~~~~---~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~~~ 86 (129)
T 2xev_A 10 FDALKNGKYDDASQLFLSFLEL---YPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGLSQ 86 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH---CSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHH---CCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHH
Confidence 3444455555555555555443 222 1 244444555555555555555554432 112 1 33344444444
Q ss_pred HhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 597 RVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 597 ~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
...|++++|...++++++..|+++.
T Consensus 87 ~~~g~~~~A~~~~~~~~~~~p~~~~ 111 (129)
T 2xev_A 87 YGEGKNTEAQQTLQQVATQYPGSDA 111 (129)
T ss_dssp HHTTCHHHHHHHHHHHHHHSTTSHH
T ss_pred HHcCCHHHHHHHHHHHHHHCCCChH
Confidence 5555555555555555555554433
No 159
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=98.48 E-value=7.6e-05 Score=75.82 Aligned_cols=199 Identities=9% Similarity=-0.020 Sum_probs=102.1
Q ss_pred hHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-CCH-HHHHHHHHHHHHcCChhHHHHHHHHHHHc
Q 047767 435 SCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNV-VCFTSIMNGYSRNGMGREALDMLEVMIQR 512 (666)
Q Consensus 435 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~-~~~~~li~~~~~~~~~~~a~~~~~~m~~~ 512 (666)
.+..+++.+.... +.+...|-..+..+.+.|+.+.|..+|++... |+. ..|. .|....+.++. ++.+.+.
T Consensus 197 Rv~~~ye~al~~~-p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~P~~~~l~~----~y~~~~e~~~~---~~~l~~~ 268 (493)
T 2uy1_A 197 RMHFIHNYILDSF-YYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEMSDGMFLSL----YYGLVMDEEAV---YGDLKRK 268 (493)
T ss_dssp HHHHHHHHHHHHT-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCSSHHHH----HHHHHTTCTHH---HHHHHHH
T ss_pred HHHHHHHHHHHcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhCCCcHHHHH----HHHhhcchhHH---HHHHHHH
Confidence 3445566555532 34455666666666677777777777764432 222 1221 12222122222 2222221
Q ss_pred C---------CCCC---HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcC-ChHHHHHHHHh
Q 047767 513 G---------LIPD---KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG-ILDKAEELLQQ 579 (666)
Q Consensus 513 g---------~~p~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g-~~~~A~~~~~~ 579 (666)
- ..+. ...|...+....+.++.+.|..+|+++ .. . ..+...|...+..-...+ +.+.|..+|+.
T Consensus 269 ~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~-~-~~~~~v~i~~A~lE~~~~~d~~~ar~ife~ 345 (493)
T 2uy1_A 269 YSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GN-E-GVGPHVFIYCAFIEYYATGSRATPYNIFSS 345 (493)
T ss_dssp TC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TT-S-CCCHHHHHHHHHHHHHHHCCSHHHHHHHHH
T ss_pred HHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hC-C-CCChHHHHHHHHHHHHHCCChHHHHHHHHH
Confidence 0 0111 123455555555566677777777777 22 1 123334433232222223 57777777765
Q ss_pred CC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 580 TP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 580 ~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.. .-| +...|...+.-....|+.+.|..+++++ +.....|...+..-...|+.+.+..+++++.+
T Consensus 346 al~~~~~~~~~~~~yid~e~~~~~~~~aR~l~er~----~k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 346 GLLKHPDSTLLKEEFFLFLLRIGDEENARALFKRL----EKTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp HHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHS----CCBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred HHHHCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHH----HHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 43 112 3344555555556667777777777776 23345566666666667777777777776653
No 160
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.47 E-value=1.4e-07 Score=75.06 Aligned_cols=81 Identities=14% Similarity=0.094 Sum_probs=39.5
Q ss_pred CChHHHHHHHHhCCCC----C-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHH
Q 047767 568 GILDKAEELLQQTPGG----G-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 568 g~~~~A~~~~~~~~~~----~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
|++++|+..|++.... | +...|..+...+...|++++|+..++++++.+|+++.++..++.+|...|++++|++.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 83 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGVEL 83 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHHHH
Confidence 4444455544443311 2 2334444555555555555555555555555555555555555555555555555555
Q ss_pred HHHHHh
Q 047767 643 RETALA 648 (666)
Q Consensus 643 ~~~~~~ 648 (666)
+++..+
T Consensus 84 ~~~al~ 89 (117)
T 3k9i_A 84 LLKIIA 89 (117)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 554443
No 161
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.44 E-value=2.4e-06 Score=75.77 Aligned_cols=155 Identities=11% Similarity=-0.012 Sum_probs=113.4
Q ss_pred HhhCCHHHHHH---HhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHc----CCCCCH-HHHHHHHHHhcCCCcH
Q 047767 463 SRCGHIELSHQ---VFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQR----GLIPDK-VTFLCVLAGCNHSGMV 534 (666)
Q Consensus 463 ~~~g~~~~A~~---~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~----g~~p~~-~~~~~l~~~~~~~g~~ 534 (666)
...|++++|.+ .+..........+..+...+...|++++|...+++..+. |..|.. ..+..+...+...|++
T Consensus 3 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 82 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAHPATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGNW 82 (203)
T ss_dssp ----CHHHHHHHHHHHHTSTTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCH
T ss_pred cccccHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCCH
Confidence 34688888888 665544445678888888999999999999999887752 222222 3677788889999999
Q ss_pred HHHHHHHHHhHHhhCCCC-C----chHHHHHHHHHHhcCChHHHHHHHHhCC----CCCC----HHHHHHHHHHHHhhCC
Q 047767 535 KEGQLVFNSMKSVYGIDA-D----RQHYSCMIDMLGRAGILDKAEELLQQTP----GGGD----CMMWSSLLRSCRVHGN 601 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p-~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~~----~~~~~~l~~~~~~~~~ 601 (666)
++|...+++..+...-.+ + ...+..+...+...|++++|...+++.. ..++ ..++..+...+...|+
T Consensus 83 ~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~ 162 (203)
T 3gw4_A 83 DAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEKN 162 (203)
T ss_dssp HHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCcC
Confidence 999999998876522223 2 4557888899999999999999987653 1222 2346778888999999
Q ss_pred hHHHHHHHHHHHhcCC
Q 047767 602 EIIGRRVANILMELEP 617 (666)
Q Consensus 602 ~~~a~~~~~~~~~~~p 617 (666)
+++|.+.+++++++..
T Consensus 163 ~~~A~~~~~~al~~~~ 178 (203)
T 3gw4_A 163 LLEAQQHWLRARDIFA 178 (203)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999999888543
No 162
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.44 E-value=5e-07 Score=91.74 Aligned_cols=119 Identities=9% Similarity=-0.058 Sum_probs=100.9
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh
Q 047767 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH 599 (666)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 599 (666)
.+...+.+.|++++|.+.++++.+. .|+ ...|..+..+|.+.|++++|++.+++.. ..| +...|..+..++...
T Consensus 11 ~lg~~~~~~g~~~~A~~~~~~Al~~---~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~ 87 (477)
T 1wao_1 11 TQANDYFKAKDYENAIKFYSQAIEL---NPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMAL 87 (477)
T ss_dssp SSSSSTTTTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHc
Confidence 3445677889999999999999875 555 7889999999999999999999998765 445 678899999999999
Q ss_pred CChHHHHHHHHHHHhcCCCCcchHHHHHHH--HhhcCCchHHHHHHH
Q 047767 600 GNEIIGRRVANILMELEPVDFAVYSQVSNF--YSEIGEFEVSMQIRE 644 (666)
Q Consensus 600 ~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~--~~~~g~~~~A~~~~~ 644 (666)
|++++|++.++++++.+|+++.++..++.+ +...|++++|++.++
T Consensus 88 g~~~eA~~~~~~al~~~p~~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 88 GKFRAALRDYETVVKVKPHDKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp TCHHHHHHHHHHHHHHSTTCTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred CCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999999999999999999999999988 889999999999987
No 163
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.43 E-value=1.3e-06 Score=88.31 Aligned_cols=94 Identities=11% Similarity=-0.055 Sum_probs=77.2
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...|..+..+|.+.|++++|+..++++. ..| +...|..+..+|...|++++|+..|+++++++|+++.++..++.++.
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~ 396 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNPQNKAARLQISMCQK 396 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC----CHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 4678889999999999999999998765 334 77889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHH-HHHHHH
Q 047767 632 EIGEFEVSMQ-IRETAL 647 (666)
Q Consensus 632 ~~g~~~~A~~-~~~~~~ 647 (666)
..|++++|.+ .++.|-
T Consensus 397 ~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 397 KAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 9999988774 355443
No 164
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.41 E-value=1.3e-06 Score=71.72 Aligned_cols=111 Identities=6% Similarity=-0.201 Sum_probs=85.4
Q ss_pred CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 047767 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLL 593 (666)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 593 (666)
+...+..+...+...|++++|...|+..... .|+ ...+..+..+|...|++++|+..+++.. ..| +...|..+.
T Consensus 8 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~---~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~ 84 (137)
T 3q49_B 8 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 84 (137)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHH
T ss_pred cHHHHHHHHHHHHHhCcHHHHHHHHHHHHhh---CcCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCchhHHHHHHHH
Confidence 4556777777888888888888888888765 344 6778888888888888888888887654 334 677888888
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCC-----CcchHHHHHHHH
Q 047767 594 RSCRVHGNEIIGRRVANILMELEPV-----DFAVYSQVSNFY 630 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~p~-----~~~~~~~l~~~~ 630 (666)
..+...|++++|+..++++++..|+ +..+...+..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~~~~l~~~~ 126 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSALRIAK 126 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCTTHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHHChhHHHHHHHHHHHHHHHHH
Confidence 8899999999999999999998887 455555555444
No 165
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.41 E-value=1.6e-06 Score=73.87 Aligned_cols=98 Identities=12% Similarity=0.031 Sum_probs=87.7
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..++..+...|++++|...+++.. ..| +...|..+...+...|++++|+..++++++.+|.++.++..++.++.
T Consensus 13 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~a~~~~ 92 (166)
T 1a17_A 13 AEELKTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNM 92 (166)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcccHHHHHHHHHHHH
Confidence 4557788889999999999999998765 334 77889999999999999999999999999999999999999999999
Q ss_pred hcCCchHHHHHHHHHHhCCC
Q 047767 632 EIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 632 ~~g~~~~A~~~~~~~~~~~~ 651 (666)
..|++++|.+.++++.+...
T Consensus 93 ~~~~~~~A~~~~~~a~~~~p 112 (166)
T 1a17_A 93 ALGKFRAALRDYETVVKVKP 112 (166)
T ss_dssp HTTCHHHHHHHHHHHHHHST
T ss_pred HhccHHHHHHHHHHHHHhCC
Confidence 99999999999999887544
No 166
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.40 E-value=7.1e-07 Score=86.25 Aligned_cols=149 Identities=12% Similarity=-0.012 Sum_probs=84.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHH
Q 047767 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562 (666)
Q Consensus 483 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 562 (666)
...+..+...+.+.|++++|+..|++... ..|+... +...|+.+++...+. ...|..+..
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nla~ 238 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIA--YMGDDFM-------FQLYGKYQDMALAVK-----------NPCHLNIAA 238 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHH--HSCHHHH-------HTCCHHHHHHHHHHH-----------THHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHH--Hhccchh-------hhhcccHHHHHHHHH-----------HHHHHHHHH
Confidence 44566677777788888888888888777 4565442 233444444433221 236888999
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH-hhcCCchHH
Q 047767 563 MLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY-SEIGEFEVS 639 (666)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A 639 (666)
+|.+.|++++|+..+++.. ..| +...|..+..++...|++++|+..|+++++++|+++.++..|+.+. ...+..+++
T Consensus 239 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 239 CLIKLKRYDEAIGHCNIVLTEEEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp HHHTTTCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 344 7788999999999999999999999999999999999999999884 456778888
Q ss_pred HHHHHHHHhCCC
Q 047767 640 MQIRETALARKL 651 (666)
Q Consensus 640 ~~~~~~~~~~~~ 651 (666)
...|++|.+...
T Consensus 319 ~~~~~~~l~~~p 330 (338)
T 2if4_A 319 KEMYKGIFKGKD 330 (338)
T ss_dssp ------------
T ss_pred HHHHHHhhCCCC
Confidence 889988865443
No 167
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.40 E-value=6.6e-07 Score=76.12 Aligned_cols=101 Identities=12% Similarity=-0.051 Sum_probs=56.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhC-----C----------CCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-C
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYG-----I----------DAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-G 582 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~----------~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~ 582 (666)
.+......+.+.|++++|+..|.+...... - .|. ...|..+..+|.+.|++++|+..++++. .
T Consensus 13 ~~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~ 92 (162)
T 3rkv_A 13 ALRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKR 92 (162)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhc
Confidence 455566667777777777777777664300 0 111 2445555555556666666665555433 2
Q ss_pred CC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCc
Q 047767 583 GG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 583 ~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
.| +...|..++.++...|++++|+..++++++++|+++
T Consensus 93 ~p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~p~~~ 131 (162)
T 3rkv_A 93 EETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNHPAAA 131 (162)
T ss_dssp STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCGGGH
T ss_pred CCcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcCCCCH
Confidence 22 445555555555555666666666666666665554
No 168
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.39 E-value=9.2e-07 Score=71.83 Aligned_cols=110 Identities=9% Similarity=-0.048 Sum_probs=75.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CC----CC----HHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GG----GD----CMMWS 590 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~----~~----~~~~~ 590 (666)
.+..+...+...|++++|...+++.... .+.+...+..++.+|...|++++|...++++. .. ++ ...+.
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKEL--DPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhc--CCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 5666677777778888888888877764 12346667777777777888888877777654 11 12 55666
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhh
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSE 632 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~ 632 (666)
.+...+...|++++|.+.++++++..| ++.....+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~l~~~~~~ 124 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEHR-TPDVLKKCQQAEKI 124 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhCC-CHHHHHHHHHHHHH
Confidence 777777777788888888887777777 46666666655543
No 169
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.37 E-value=3e-07 Score=81.39 Aligned_cols=97 Identities=6% Similarity=-0.129 Sum_probs=80.3
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-C----------------HHHHHHHHHHHHhhCChHHHHHHHHHHHhc
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-D----------------CMMWSSLLRSCRVHGNEIIGRRVANILMEL 615 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~----------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 615 (666)
...+..+...+.+.|++++|++.+++.. ..| + ...|..+...+...|++++|+..++++++.
T Consensus 38 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~ 117 (198)
T 2fbn_A 38 AFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCNLNLATCYNKNKDYPKAIDHASKVLKI 117 (198)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 4456666777777777777777776543 122 2 267888889999999999999999999999
Q ss_pred CCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 616 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+|+++.++..++.+|...|++++|++.|++..+..
T Consensus 118 ~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~ 152 (198)
T 2fbn_A 118 DKNNVKALYKLGVANMYFGFLEEAKENLYKAASLN 152 (198)
T ss_dssp STTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred CcccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC
Confidence 99999999999999999999999999999887653
No 170
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.34 E-value=2e-06 Score=68.74 Aligned_cols=97 Identities=10% Similarity=-0.047 Sum_probs=72.9
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHH
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCR 597 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~ 597 (666)
+..+...+.+.|++++|...++++.+. .|+ ...|..+..++...|++++|+..+++.. ..| +...|..+...+.
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~---~P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQK---EPEREEAWRSLGLTQAENEKDGLAIIALNHARMLDPKDIAVHAALAVSHT 96 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHH---STTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHH
Confidence 444556677788888888888888865 454 7778888888888899998888888755 344 6678888888899
Q ss_pred hhCChHHHHHHHHHHHhcCCCCc
Q 047767 598 VHGNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 598 ~~~~~~~a~~~~~~~~~~~p~~~ 620 (666)
..|++++|+..++++++.+|.++
T Consensus 97 ~~g~~~~A~~~~~~al~~~P~~~ 119 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLSQPQYE 119 (121)
T ss_dssp HHHHHHHHHHHHHHHHC------
T ss_pred HcCCHHHHHHHHHHHHHhCcCCC
Confidence 99999999999999999988764
No 171
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.34 E-value=2.5e-06 Score=80.03 Aligned_cols=112 Identities=5% Similarity=-0.207 Sum_probs=88.0
Q ss_pred CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCC-CchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHH
Q 047767 517 DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDA-DRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLL 593 (666)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~ 593 (666)
+...+..+...+...|++++|...|+++... .| +...|..+..+|.+.|++++|++.+++.. ..| +...+..++
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg 79 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITR---NPLVAVYYTNRALCYLKMQQPEQALADCRRALELDGQSVKAHFFLG 79 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSCTTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHH
Confidence 3456777778888889999999999988865 45 47778888888999999999999888754 445 667888888
Q ss_pred HHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 594 RSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
.++...|++++|+..++++++++|+++..+..+++...
T Consensus 80 ~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~~~~~~~ 117 (281)
T 2c2l_A 80 QCQLEMESYDEAIANLQRAYSLAKEQRLNFGDDIPSAL 117 (281)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCCSHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhCccchhhHHHHHHHHH
Confidence 88888899999999999999888877655555555444
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.32 E-value=7.5e-06 Score=66.23 Aligned_cols=94 Identities=12% Similarity=-0.111 Sum_probs=77.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-CCC-CH---HHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC---cchHHHHHH
Q 047767 557 YSCMIDMLGRAGILDKAEELLQQTP-GGG-DC---MMWSSLLRSCRVHGNEIIGRRVANILMELEPVD---FAVYSQVSN 628 (666)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~---~~~~~~l~~ 628 (666)
+..++..+...|++++|++.++.+. ..| +. ..+..+...+...|++++|+..++++++..|++ +.++..++.
T Consensus 5 ~~~~a~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~~~~~~~~~~~la~ 84 (129)
T 2xev_A 5 AYNVAFDALKNGKYDDASQLFLSFLELYPNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPTHDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCSSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCCCcccHHHHHHHHH
Confidence 4456778889999999999988765 234 23 477778888889999999999999999999988 777899999
Q ss_pred HHhhcCCchHHHHHHHHHHhCC
Q 047767 629 FYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 629 ~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+|...|++++|+..++++.+..
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~~~ 106 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVATQY 106 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS
T ss_pred HHHHcCCHHHHHHHHHHHHHHC
Confidence 9999999999999999887654
No 173
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.32 E-value=2.3e-06 Score=69.11 Aligned_cols=102 Identities=5% Similarity=-0.036 Sum_probs=69.3
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC----C----HHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG----D----CMMW 589 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~----~----~~~~ 589 (666)
.+..+...+.+.|++++|++.|++..+. .|+ ...|..+..+|.+.|++++|++.+++.. ..| + ..+|
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~---~p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~ 86 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIEL---DPSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAM 86 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHh---CCCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHH
Confidence 4555666666777777777777776654 444 5666677777777777777777766543 111 1 2356
Q ss_pred HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHH
Q 047767 590 SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQ 625 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~ 625 (666)
..++..+...|++++|++.|+++++..|+ +.....
T Consensus 87 ~~lg~~~~~~~~~~~A~~~~~kal~~~~~-~~~~~~ 121 (127)
T 4gcn_A 87 SRAGNAFQKQNDLSLAVQWFHRSLSEFRD-PELVKK 121 (127)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHSCC-HHHHHH
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHhhCcC-HHHHHH
Confidence 67778888899999999999999988774 444433
No 174
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=98.32 E-value=3.5e-06 Score=80.58 Aligned_cols=432 Identities=11% Similarity=0.078 Sum_probs=275.8
Q ss_pred chhhhhHHHHhHhcCCChhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHc
Q 047767 43 NIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSN 122 (666)
Q Consensus 43 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~ 122 (666)
.+..|..|..+..+.+++.+|+..| ++..|+..|..+|.+..+.|.+++-+.++...++.. -++..=+.|+-+|++
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy--IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~--ke~~IDteLi~ayAk 128 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY--IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAK 128 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS--CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTC--CSTTTTHHHHHHHHT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH--HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHh--cccccHHHHHHHHHh
Confidence 4566788999999999999998776 445667789999999999999999999998777653 344555689999999
Q ss_pred CCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCC------------------------CCccc
Q 047767 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPE------------------------RNLAT 178 (666)
Q Consensus 123 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~------------------------~~~~~ 178 (666)
.++..+-++++. .||..-...+.+-|...|.++.|.-+|..+.. .++.+
T Consensus 129 ~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~kt 201 (624)
T 3lvg_A 129 TNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRT 201 (624)
T ss_dssp SCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCS
T ss_pred hCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhH
Confidence 998876555442 47777777788888888888888888777653 46789
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHH
Q 047767 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYS 258 (666)
Q Consensus 179 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 258 (666)
|-.+-.+|...+.+.-|.-.--.+.- .|| ....++..|-..|.+++-..+++...... .....+++-|.-.|+
T Consensus 202 WKeV~~ACvd~~EfrLAqicGLniIv---had--eL~elv~~YE~~G~f~ELIsLlEaglglE--rAHmGmFTELaILYs 274 (624)
T 3lvg_A 202 WKEVCFACVDGKEFRLAQMCGLHIVV---HAD--ELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYS 274 (624)
T ss_dssp HHHHTHHHHHSCTTTTTTHHHHHHHC---CSS--CCSGGGSSSSTTCCCTTSTTTHHHHTTST--TCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCchHHHHHHHhcchhcc---cHH--HHHHHHHHHHhCCCHHHHHHHHHHHhCCC--chhHHHHHHHHHHHH
Confidence 99999999999999877654333331 222 23345667889999999999999988653 678889999999999
Q ss_pred ccCChHHHHHHhccC----CCC-------ChhhHHHHHHHHHcCCChHHHHHHHHHhHhc--------------CCCCCh
Q 047767 259 ACGSLIEAKKSFDFI----PVD-------DVISWNSIVSIYADYDLIFDALELFFRMQLC--------------RKRPSI 313 (666)
Q Consensus 259 ~~~~~~~A~~~~~~~----~~~-------~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~--------------~~~p~~ 313 (666)
+- +.++.++-++.. .-| ....|.-++-.|.+-..++.|.... .+. .-..+.
T Consensus 275 KY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~ltM---i~h~~~Aw~h~~Fkdii~KVaN~ 350 (624)
T 3lvg_A 275 KF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAIITM---MNHPTDAWKEGQFKDIITKVANV 350 (624)
T ss_dssp SS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHHTT---TSCHHHHCCGGGGTTTGGGCSCS
T ss_pred hc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHHHH---HhCChhhccHHHHHHHHHHcchH
Confidence 87 445554444332 222 4456888888888888888765432 111 013444
Q ss_pred hhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHH-HHHHHHHh
Q 047767 314 RSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCN-SLMTSLLH 392 (666)
Q Consensus 314 ~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~li~~~~~ 392 (666)
..|-..+..|....-. ....++.-+ ...+++ ...++.+.+.|.+......+......|...-| ++-..|..
T Consensus 351 EiyYKAi~FYL~e~P~-lL~DLL~vL-~prlDh------~RvV~~~~k~~~LpLIkpYL~~Vq~~N~~aVNeAln~L~IE 422 (624)
T 3lvg_A 351 ELYYRAIQFYLEFKPL-LLNDLLMVL-SPRLDH------TRAVNYFSKVKQLPLVKPYLRSVQNHNNKSVNESLNNLFIT 422 (624)
T ss_dssp HHHHHHHHHHTTSCCT-TSHHHHHHH-CTTCCS------TTTHHHHHTTTCGGGGTGGGTSCCCSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhChH-HHHHHHHhc-cccCCh------HHHHHHHHhcCCchhhHHHHHHHHHhhHHHHHHHHHHHHhh
Confidence 4555555555443211 111111111 111111 24456666677777777777777666655444 34455666
Q ss_pred cCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHH
Q 047767 393 SGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSH 472 (666)
Q Consensus 393 ~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~ 472 (666)
..+++.-... +.. +..-...+.|.++- ++ +-...-..-...|.+.++|+.+.
T Consensus 423 EEDy~~LR~S-------------------Id~--ydNFD~i~LA~rLE----kH---eL~eFRrIAA~LYkkn~rw~qsi 474 (624)
T 3lvg_A 423 EEDYQALRTS-------------------IDA--YDNFDNISLAQRLE----KH---ELIEFRRIAAYLFKGNNRWKQSV 474 (624)
T ss_dssp TTCCHHHHHT-------------------TSS--CCCSCTTHHHHHHH----TC---SSHHHHHHHHHHHHTTCHHHHHS
T ss_pred hhhHHHHHHH-------------------HHH--hccccHHHHHHHHh----hC---chHHHHHHHHHHHHhcccHHHHH
Confidence 6665532211 111 22222222222221 00 11111122344577788888887
Q ss_pred HHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHH
Q 047767 473 QVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLV 540 (666)
Q Consensus 473 ~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~ 540 (666)
.+.++-. .|.-.|...+..|+.+-|.++++-..+.| +...|.+.+..|...=++|-+.++
T Consensus 475 ~l~KkDk-----lykDAietAa~S~~~elaeeLL~yFv~~g---~~EcF~a~LytCYdLlrpDvVlEl 534 (624)
T 3lvg_A 475 ELCKKDS-----LYKDAMQYASESKDTELAEELLQWFLQEE---KRECFGACLFTCYDLLRPDVVLET 534 (624)
T ss_dssp SCSSTTC-----CTTGGGTTTTTCCCTTHHHHHHHHHHHHC---STHHHHHHHHHTSSSSSCHHHHHH
T ss_pred HHHHhcc-----cHHHHHHHHHHcCCHHHHHHHHHHHHHcC---chHHHHHHHHHHhhccChHHHHHH
Confidence 7665433 11122344456788888888888888866 445688888888887777776665
No 175
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.31 E-value=2.7e-06 Score=72.11 Aligned_cols=128 Identities=14% Similarity=0.070 Sum_probs=79.2
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHHH
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP----GGG----DCMM 588 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~ 588 (666)
+..+...+...|++++|...+++..+...-.++ ..++..+...|...|++++|.+.+++.. ..+ ....
T Consensus 12 ~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~ 91 (164)
T 3ro3_A 12 FGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQS 91 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHH
Confidence 444444445555555555555554432110111 1345566666666666666666665432 111 1345
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHhcCCC------CcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 589 WSSLLRSCRVHGNEIIGRRVANILMELEPV------DFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~------~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
+..+...+...|++++|.+.++++++..+. .+.++..++.+|...|++++|.+.+++..+
T Consensus 92 ~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 157 (164)
T 3ro3_A 92 CYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 157 (164)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHH
Confidence 666777788888888888888888764321 245678889999999999999999987765
No 176
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.29 E-value=5.1e-06 Score=83.82 Aligned_cols=189 Identities=4% Similarity=-0.114 Sum_probs=138.7
Q ss_pred HHHHhhCCHHHHHHHhccCCC--C---C---------------HHHHHHHHHHHHHcCChhHHHHHHHHHHHc-CCCCCH
Q 047767 460 DAYSRCGHIELSHQVFEKIPS--P---N---------------VVCFTSIMNGYSRNGMGREALDMLEVMIQR-GLIPDK 518 (666)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~--~---~---------------~~~~~~li~~~~~~~~~~~a~~~~~~m~~~-g~~p~~ 518 (666)
..+.+.|++++|.+.|..+.+ + + ...+..+...|...|++++|.++++++... +..++.
T Consensus 12 ~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~ 91 (434)
T 4b4t_Q 12 RRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKS 91 (434)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHH
T ss_pred HHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccch
Confidence 345677888888888876542 1 0 124677889999999999999999887752 112222
Q ss_pred H----HHHHHHHHhcCCCcHHHHHHHHHHhHHhh---CCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-------CC
Q 047767 519 V----TFLCVLAGCNHSGMVKEGQLVFNSMKSVY---GIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-------GG 583 (666)
Q Consensus 519 ~----~~~~l~~~~~~~g~~~~a~~~~~~~~~~~---~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~ 583 (666)
. ..+.+...+...|+.+.|..+++...... +..+. ..++..|+..|...|++++|..++++.. .+
T Consensus 92 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~ 171 (434)
T 4b4t_Q 92 KTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDK 171 (434)
T ss_dssp HHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCS
T ss_pred HHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccc
Confidence 1 23444455667899999999998876431 22233 5678889999999999999999987643 12
Q ss_pred C-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC---CCC----cchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 584 G-DCMMWSSLLRSCRVHGNEIIGRRVANILMELE---PVD----FAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 584 ~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---p~~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
+ ....+..++..|...|++++|...++++.... +.+ ...+..++..+...|++++|...|....+
T Consensus 172 ~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~~ 244 (434)
T 4b4t_Q 172 PSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESFE 244 (434)
T ss_dssp THHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 2 35688888999999999999999999988743 222 34567788999999999999998877653
No 177
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.28 E-value=2.3e-06 Score=83.56 Aligned_cols=137 Identities=7% Similarity=-0.101 Sum_probs=101.3
Q ss_pred HHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHH
Q 047767 484 VCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMID 562 (666)
Q Consensus 484 ~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~ 562 (666)
..|..+...+.+.|++++|+..|++..+. .|+.. .... .+... ...|. ...|..+..
T Consensus 224 ~~~~~~g~~~~~~g~~~~Ai~~y~kAl~~--~~~~~----------~~~~-------~~~~~---~~~~~~~~~~~nla~ 281 (370)
T 1ihg_A 224 EDLKNIGNTFFKSQNWEMAIKKYTKVLRY--VEGSR----------AAAE-------DADGA---KLQPVALSCVLNIGA 281 (370)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HHHHH----------HHSC-------HHHHG---GGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHH--hhcCc----------cccC-------hHHHH---HHHHHHHHHHHHHHH
Confidence 34666666777777777777777766651 11110 0000 01111 12232 677888999
Q ss_pred HHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHH
Q 047767 563 MLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSM 640 (666)
Q Consensus 563 ~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~ 640 (666)
+|.+.|++++|++.++++. ..| +...|..+..++...|++++|++.|+++++++|+++.++..++.++...++.+++.
T Consensus 282 ~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P~~~~~~~~l~~~~~~~~~~~~a~ 361 (370)
T 1ihg_A 282 CKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAPEDKAIQAELLKVKQKIKAQKDKE 361 (370)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999998765 445 67888899999999999999999999999999999999999999999998888776
Q ss_pred HH
Q 047767 641 QI 642 (666)
Q Consensus 641 ~~ 642 (666)
+.
T Consensus 362 k~ 363 (370)
T 1ihg_A 362 KA 363 (370)
T ss_dssp HC
T ss_pred HH
Confidence 54
No 178
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.28 E-value=5.4e-06 Score=79.99 Aligned_cols=127 Identities=9% Similarity=-0.019 Sum_probs=100.6
Q ss_pred HHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhcCCCcHHHHHHHHHHhHH
Q 047767 483 VVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPD----------------KVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 483 ~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 546 (666)
...|..+...+.+.|++++|+..|++..+ +.|+ ...|..+..++.+.|++++|+..++++.+
T Consensus 147 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~--~~p~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~g~~~~A~~~~~~al~ 224 (336)
T 1p5q_A 147 STIVKERGTVYFKEGKYKQALLQYKKIVS--WLEYESSFSNEEAQKAQALRLASHLNLAMCHLKLQAFSAAIESCNKALE 224 (336)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHH--HTTTCCCCCSHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCCCHHHHHHHHHHHHH--HhhccccCChHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 45667777788888888888888888887 3444 36788888889999999999999999886
Q ss_pred hhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHH-HHHHHHHHh
Q 047767 547 VYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIG-RRVANILME 614 (666)
Q Consensus 547 ~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~ 614 (666)
. .|+ ...|..+..+|...|++++|+..|+++. ..| +...+..+...+...|+.++| ...+++++.
T Consensus 225 ~---~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P~~~~a~~~l~~~~~~~~~~~~a~~~~~~~~~~ 293 (336)
T 1p5q_A 225 L---DSNNEKGLSRRGEAHLAVNDFELARADFQKVLQLYPNNKAAKTQLAVCQQRIRRQLAREKKLYANMFE 293 (336)
T ss_dssp H---CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred h---CCCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5 454 7888889999999999999999998765 344 677888888888888888888 456777665
No 179
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.26 E-value=4.8e-06 Score=65.22 Aligned_cols=99 Identities=9% Similarity=-0.027 Sum_probs=77.2
Q ss_pred HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC---CHHHHHHHHHH
Q 047767 520 TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG---DCMMWSSLLRS 595 (666)
Q Consensus 520 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~---~~~~~~~l~~~ 595 (666)
.+..+...+...|++++|...++++.+. .+.+...+..+..+|...|++++|++.+++.. ..| +...|..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQL--DPEESKYWLMKGKALYNLERYEEAVDCYNYVINVIEDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHH--CCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSCCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHh--CcCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCcccchHHHHHHHHHH
Confidence 4566667777888888888888888765 12346777888888888888888888887654 233 46788888888
Q ss_pred HHhh-CChHHHHHHHHHHHhcCCCCc
Q 047767 596 CRVH-GNEIIGRRVANILMELEPVDF 620 (666)
Q Consensus 596 ~~~~-~~~~~a~~~~~~~~~~~p~~~ 620 (666)
+... |++++|++.++++++..|.++
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~~~p~~~ 111 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKLEHHHHH 111 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGGGCCCCC
T ss_pred HHHHhCCHHHHHHHHHHHhhcccCCC
Confidence 8899 999999999999999888764
No 180
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.25 E-value=3.7e-06 Score=68.11 Aligned_cols=96 Identities=10% Similarity=0.086 Sum_probs=66.6
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC-------cchHHH
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD-------FAVYSQ 625 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~-------~~~~~~ 625 (666)
..+..++..+...|++++|...+++.. .+.+...+..+...+...|++++|+..++++++..|.+ +.++..
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELDPTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 445666777777777777777776544 22355666677777777777777777777777766655 666777
Q ss_pred HHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 626 VSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 626 l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
++.+|...|++++|.+.++++.+..
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~~ 109 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAEH 109 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC
Confidence 7777777777777777777766543
No 181
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.25 E-value=1.6e-06 Score=73.70 Aligned_cols=94 Identities=5% Similarity=-0.054 Sum_probs=71.7
Q ss_pred HHHHHHHHHhcCChHHHHHHHHhCC-C------------------CC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 557 YSCMIDMLGRAGILDKAEELLQQTP-G------------------GG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 557 ~~~l~~~~~~~g~~~~A~~~~~~~~-~------------------~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
+...+..+.+.|++++|+..|++.. . .| +...|..+..++...|++++|+..++++++++
T Consensus 14 ~~~~G~~~~~~~~~~~A~~~y~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~nla~~~~~~~~~~~A~~~~~~al~~~ 93 (162)
T 3rkv_A 14 LRQKGNELFVQKDYKEAIDAYRDALTRLDTLILREKPGEPEWVELDRKNIPLYANMSQCYLNIGDLHEAEETSSEVLKRE 93 (162)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSCTTSHHHHHHHHTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC
Confidence 4556777788888888888877543 1 12 23577777778888888888888888888888
Q ss_pred CCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 617 PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 617 p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
|+++.+|..+|.+|...|++++|+..|++..+..
T Consensus 94 p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l~ 127 (162)
T 3rkv_A 94 ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRNH 127 (162)
T ss_dssp TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhcC
Confidence 8888888888888888888888888888776643
No 182
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=1.1e-06 Score=69.90 Aligned_cols=93 Identities=14% Similarity=0.065 Sum_probs=68.6
Q ss_pred CCcHHHHHHHHHHhHHhhCC-CCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHH
Q 047767 531 SGMVKEGQLVFNSMKSVYGI-DAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 531 ~g~~~~a~~~~~~~~~~~~~-~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~ 606 (666)
.|++++|+..|++..+. +. .|+ ...+..+..+|...|++++|++.+++.. ..| +...+..+..++...|++++|+
T Consensus 3 ~g~~~~A~~~~~~al~~-~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIAS-GLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSS-CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHc-CCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCchHHHHHHHHHHHHcCCHHHHH
Confidence 46777788888777743 10 233 6677788888888888888888888765 334 6778888888899999999999
Q ss_pred HHHHHHHhcCCCCcchHH
Q 047767 607 RVANILMELEPVDFAVYS 624 (666)
Q Consensus 607 ~~~~~~~~~~p~~~~~~~ 624 (666)
..++++++..|+++....
T Consensus 82 ~~~~~al~~~p~~~~~~~ 99 (117)
T 3k9i_A 82 ELLLKIIAETSDDETIQS 99 (117)
T ss_dssp HHHHHHHHHHCCCHHHHH
T ss_pred HHHHHHHHhCCCcHHHHH
Confidence 999999999998876544
No 183
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=98.24 E-value=4.1e-07 Score=71.52 Aligned_cols=92 Identities=8% Similarity=-0.001 Sum_probs=78.0
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC------cchHH
Q 047767 553 DRQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD------FAVYS 624 (666)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~------~~~~~ 624 (666)
+...+..+...+.+.|++++|++.+++.. ..| +...|..+...+...|++++|++.++++++.+|++ +.++.
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~ 82 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTSTAEHVAIRSKLQY 82 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCSSTTSHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCccHHHHHHHHHH
Confidence 34567788888899999999999988754 334 67888899999999999999999999999999998 78888
Q ss_pred HHHHHHhhcCCchHHHHHHH
Q 047767 625 QVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 625 ~l~~~~~~~g~~~~A~~~~~ 644 (666)
.++.++...|++++|++.++
T Consensus 83 ~~~~~~~~~~~~~~a~~~~~ 102 (111)
T 2l6j_A 83 RLELAQGAVGSVQIPVVEVD 102 (111)
T ss_dssp HHHHHHHHHHCCCCCSSSSS
T ss_pred HHHHHHHHHHhHhhhHhHHH
Confidence 99999999998888876654
No 184
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=98.22 E-value=5.4e-06 Score=63.50 Aligned_cols=65 Identities=14% Similarity=0.199 Sum_probs=56.8
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|++.+++..+.
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l 70 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEV 70 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh
Confidence 66778888888889999999999999999999999999999999999999999999998877643
No 185
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.19 E-value=7.6e-06 Score=67.00 Aligned_cols=112 Identities=7% Similarity=-0.168 Sum_probs=84.8
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHh----hCChHHHHH
Q 047767 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRV----HGNEIIGRR 607 (666)
Q Consensus 532 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~ 607 (666)
+++++|.++|++..+. + .| ... |...|...+.+++|+++|++.....+...+..|...|.. .+|+++|++
T Consensus 9 ~d~~~A~~~~~~aa~~-g-~~--~a~--lg~~y~~g~~~~~A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~ 82 (138)
T 1klx_A 9 KDLKKAIQYYVKACEL-N-EM--FGC--LSLVSNSQINKQKLFQYLSKACELNSGNGCRFLGDFYENGKYVKKDLRKAAQ 82 (138)
T ss_dssp HHHHHHHHHHHHHHHT-T-CT--THH--HHHHTCTTSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCSSSCCCHHHHHH
T ss_pred cCHHHHHHHHHHHHcC-C-CH--hhh--HHHHHHcCCCHHHHHHHHHHHHcCCCHHHHHHHHHHHHcCCCCCccHHHHHH
Confidence 4567777888777765 4 22 222 777777777777788888776656777777777777776 678888888
Q ss_pred HHHHHHhcCCCCcchHHHHHHHHhh----cCCchHHHHHHHHHHhCCC
Q 047767 608 VANILMELEPVDFAVYSQVSNFYSE----IGEFEVSMQIRETALARKL 651 (666)
Q Consensus 608 ~~~~~~~~~p~~~~~~~~l~~~~~~----~g~~~~A~~~~~~~~~~~~ 651 (666)
.|+++.+. .++.++..|+.+|.. .++.++|.++|++..+.|.
T Consensus 83 ~~~~Aa~~--g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 83 YYSKACGL--NDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHT--TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcC--CCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 88888876 457788888888888 7888899988888887764
No 186
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.19 E-value=5.3e-05 Score=78.29 Aligned_cols=168 Identities=8% Similarity=-0.063 Sum_probs=136.5
Q ss_pred CCHHHHHHHhccCCC---CCHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCCC-HHHHHHHHHHhcCC
Q 047767 466 GHIELSHQVFEKIPS---PNVVCFTSIMNGYSRNGM----------GREALDMLEVMIQRGLIPD-KVTFLCVLAGCNHS 531 (666)
Q Consensus 466 g~~~~A~~~~~~~~~---~~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p~-~~~~~~l~~~~~~~ 531 (666)
...++|.+.++.+.. .+...|+.--.++...|+ ++++++.++++.+ ..|. ...|..-...+.+.
T Consensus 43 ~~~eeal~~~~~~l~~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~--~~pK~y~aW~hR~w~l~~l 120 (567)
T 1dce_A 43 ELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLLSRL 120 (567)
T ss_dssp CCSHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHTC
T ss_pred CCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHc
Confidence 334677888887763 355677777777777776 8999999999998 4554 45787777778888
Q ss_pred C--cHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcC-ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh------
Q 047767 532 G--MVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAG-ILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH------ 599 (666)
Q Consensus 532 g--~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g-~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------ 599 (666)
| +++++.+.++++.+. .|. ...|+.-..++.+.| .++++++.++++. ..| +...|+.....+...
T Consensus 121 ~~~~~~~el~~~~k~l~~---d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 121 PEPNWARELELCARFLEA---DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp SSCCHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSCCCCS
T ss_pred ccccHHHHHHHHHHHHhh---ccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcccccc
Confidence 8 779999999999976 444 778888888888889 8999999998876 445 788998888887663
Q ss_pred --------CChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchH
Q 047767 600 --------GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEV 638 (666)
Q Consensus 600 --------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~ 638 (666)
+.++++++.++++++.+|++..+|..+.+++.+.|+.++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHCSSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhCCCCccHHHHHHHHHhcCCCccc
Confidence 557999999999999999999999999999999988655
No 187
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=98.18 E-value=5.6e-06 Score=83.33 Aligned_cols=126 Identities=10% Similarity=-0.006 Sum_probs=97.4
Q ss_pred HhcCCCcHHHHHHHHHHhHHhhC--CCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-HHHHH
Q 047767 527 GCNHSGMVKEGQLVFNSMKSVYG--IDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP---------GGGD-CMMWS 590 (666)
Q Consensus 527 ~~~~~g~~~~a~~~~~~~~~~~~--~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~ 590 (666)
.+...|++++|+.++++..+... +-|+ ..+++.|+.+|..+|++++|+.++++.. ..|+ ..+++
T Consensus 318 ~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~ 397 (490)
T 3n71_A 318 KARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVM 397 (490)
T ss_dssp HHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHH
T ss_pred HHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHH
Confidence 35577888888888877765421 1222 5678888899999999999988887543 3343 46888
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHh-----cCCCCcchH---HHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 591 SLLRSCRVHGNEIIGRRVANILME-----LEPVDFAVY---SQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~---~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
.|...|...|++++|+.+++++++ +.|++|.+- ..|..++...|++++|...++.++++..+
T Consensus 398 nLa~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~~~~~ 467 (490)
T 3n71_A 398 RAGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMREAALN 467 (490)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 899999999999999999999887 567765554 57889999999999999999999876533
No 188
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.17 E-value=0.00055 Score=64.77 Aligned_cols=223 Identities=13% Similarity=0.066 Sum_probs=148.5
Q ss_pred HHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCC-ChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHh
Q 047767 79 NLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG-FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMR 157 (666)
Q Consensus 79 ~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~ 157 (666)
+.+-....+.+..++|++++++++..+ +-+...|+.--..+...| .++++++.++.++... +-+..+|+.....+.+
T Consensus 58 ~~~r~~~~~~e~se~AL~lt~~~L~~n-P~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~ 135 (349)
T 3q7a_A 58 DYFRAIAAKEEKSERALELTEIIVRMN-PAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDR 135 (349)
T ss_dssp HHHHHHHHTTCCSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCCCHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 333334445556678888888888764 234555666666666667 5888888888888765 4566677777777766
Q ss_pred c-C-ChhHHHHhhccCCCC---CcccHHHHHHHHHhcCCch--------HHHHHHHHHHHcCCCCCHhhHHHHHHHhccc
Q 047767 158 M-G-PSVRALDLFDELPER---NLATWNLMLRAFCELSRPD--------EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIG 224 (666)
Q Consensus 158 ~-g-~~~~a~~~~~~~~~~---~~~~~~~li~~~~~~~~~~--------~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~ 224 (666)
. + +.+++++.++.+.+. |..+|+.-...+.+.|.++ ++++.++++.+.. .-|...|+.....+.+.
T Consensus 136 l~~~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l 214 (349)
T 3q7a_A 136 ISPQDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSR 214 (349)
T ss_dssp HCCSCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTS
T ss_pred hcCCChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhc
Confidence 6 6 778888888887763 4445655555555555555 8888888888864 33666777766666666
Q ss_pred CC-------hHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCCh--------------------HHHHHHhccCC---
Q 047767 225 ML-------LDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSL--------------------IEAKKSFDFIP--- 274 (666)
Q Consensus 225 ~~-------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~--------------------~~A~~~~~~~~--- 274 (666)
+. ++++.+.++.++... +.|...|+-+-..+.+.|.. .........+.
T Consensus 215 ~~~~~~~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 292 (349)
T 3q7a_A 215 PGAETSSRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDP 292 (349)
T ss_dssp TTCCCCHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-C
T ss_pred cccccchHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcc
Confidence 64 678888888888885 78888888777777766653 22333333332
Q ss_pred ------CCChhhHHHHHHHHHcCCChHHHHHHHHHhHh
Q 047767 275 ------VDDVISWNSIVSIYADYDLIFDALELFFRMQL 306 (666)
Q Consensus 275 ------~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~ 306 (666)
.+++.....++..|...|+.++|.++++.+.+
T Consensus 293 ~~~~~~~~s~~al~~l~d~~~~~~~~~~a~~~~~~l~~ 330 (349)
T 3q7a_A 293 LPEDTPLPVPLALEYLADSFIEQNRVDDAAKVFEKLSS 330 (349)
T ss_dssp CCSSCCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cccccCCCcHHHHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 13455666777777777777777777777653
No 189
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.17 E-value=2.4e-06 Score=70.09 Aligned_cols=102 Identities=9% Similarity=-0.044 Sum_probs=73.9
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC-------------chHHHHHHHHHHhcCChHHHHHHHHhCC-C------
Q 047767 523 CVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD-------------RQHYSCMIDMLGRAGILDKAEELLQQTP-G------ 582 (666)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~-------------~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~------ 582 (666)
.....+.+.|++++|+..|++..+. .|+ ...|..+..++.+.|++++|+..+++.. .
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l---~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e 92 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEI---SHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGE 92 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH---HTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhh---CCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhcccc
Confidence 3344455555666666666655543 232 2277888888888888888888777544 3
Q ss_pred -CC-CHHHH----HHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHH
Q 047767 583 -GG-DCMMW----SSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVS 627 (666)
Q Consensus 583 -~~-~~~~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~ 627 (666)
.| +...| .....++...|++++|+..|+++++++|+|..++..+.
T Consensus 93 ~~pd~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~ 143 (159)
T 2hr2_A 93 LNQDEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKE 143 (159)
T ss_dssp TTSTHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHH
T ss_pred CCCchHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHH
Confidence 67 45688 89999999999999999999999999999877665443
No 190
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.13 E-value=6.8e-06 Score=79.32 Aligned_cols=149 Identities=9% Similarity=-0.072 Sum_probs=81.7
Q ss_pred hHHHHHHHHHHHhhCCHHHHHHHhccCCC--CCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhc
Q 047767 452 IAVSCSLMDAYSRCGHIELSHQVFEKIPS--PNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCN 529 (666)
Q Consensus 452 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~--~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~ 529 (666)
...+..+...+.+.|++++|...|++... |+... +...++..++...+ . ...|..+..++.
T Consensus 179 a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~p~~~~-------~~~~~~~~~~~~~l---~-------~~~~~nla~~~~ 241 (338)
T 2if4_A 179 ADRRKMDGNSLFKEEKLEEAMQQYEMAIAYMGDDFM-------FQLYGKYQDMALAV---K-------NPCHLNIAACLI 241 (338)
T ss_dssp HHHHHHHHHHTCSSSCCHHHHHHHHHHHHHSCHHHH-------HTCCHHHHHHHHHH---H-------THHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHHhccchh-------hhhcccHHHHHHHH---H-------HHHHHHHHHHHH
Confidence 45566777888899999999999987653 33221 12223333333222 1 136778888899
Q ss_pred CCCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHH-HHhhCChHHH
Q 047767 530 HSGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRS-CRVHGNEIIG 605 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~-~~~~~~~~~a 605 (666)
+.|++++|+..+++..+. .|+ ...|..+..+|...|++++|+..|+++. ..| +...+..+... ....+..+.+
T Consensus 242 ~~g~~~~A~~~~~~al~~---~p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~~~~a~~~L~~l~~~~~~~~~~a 318 (338)
T 2if4_A 242 KLKRYDEAIGHCNIVLTE---EEKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPDDKAIRRELRALAEQEKALYQKQ 318 (338)
T ss_dssp TTTCCHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC--------------------------
T ss_pred HcCCHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999875 454 7889999999999999999999999876 455 44555555555 3345678888
Q ss_pred HHHHHHHHhcCCCCc
Q 047767 606 RRVANILMELEPVDF 620 (666)
Q Consensus 606 ~~~~~~~~~~~p~~~ 620 (666)
...|++++...|.++
T Consensus 319 ~~~~~~~l~~~p~~~ 333 (338)
T 2if4_A 319 KEMYKGIFKGKDEGG 333 (338)
T ss_dssp ---------------
T ss_pred HHHHHHhhCCCCCCC
Confidence 999999999998765
No 191
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=98.12 E-value=2e-06 Score=70.45 Aligned_cols=84 Identities=10% Similarity=0.033 Sum_probs=54.2
Q ss_pred CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCC----------hHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcC-
Q 047767 568 GILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGN----------EIIGRRVANILMELEPVDFAVYSQVSNFYSEIG- 634 (666)
Q Consensus 568 g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g- 634 (666)
+.+++|++.++... ..| +...|..+..++...++ +++|+..|+++++++|+++.+|+.||.+|...|
T Consensus 16 ~~feeA~~~~~~Ai~l~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~lg~ 95 (158)
T 1zu2_A 16 LLFEQIRQDAENTYKSNPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSFAF 95 (158)
T ss_dssp HHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHhcc
Confidence 33444444444332 222 44444444444444433 568888888888888888888888888888764
Q ss_pred ----------CchHHHHHHHHHHhCCC
Q 047767 635 ----------EFEVSMQIRETALARKL 651 (666)
Q Consensus 635 ----------~~~~A~~~~~~~~~~~~ 651 (666)
++++|++.|+++.+...
T Consensus 96 l~P~~~~a~g~~~eA~~~~~kAl~l~P 122 (158)
T 1zu2_A 96 LTPDETEAKHNFDLATQFFQQAVDEQP 122 (158)
T ss_dssp HCCCHHHHHHHHHHHHHHHHHHHHHCT
T ss_pred cCcchhhhhccHHHHHHHHHHHHHhCC
Confidence 78888888888776543
No 192
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=98.11 E-value=1.2e-05 Score=60.09 Aligned_cols=81 Identities=16% Similarity=0.151 Sum_probs=64.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHh
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYS 631 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~ 631 (666)
...+..+...+...|++++|++.+++.. ..| +...+..+...+...|++++|+..++++++.+|.++.++..++.++.
T Consensus 9 ~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~l~~~~~ 88 (91)
T 1na3_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAKQNLGNAKQ 88 (91)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCCCHHHHHHHHHHHH
Confidence 4566777788888888888888887654 233 66778888888888899999999999999999988888888888887
Q ss_pred hcC
Q 047767 632 EIG 634 (666)
Q Consensus 632 ~~g 634 (666)
..|
T Consensus 89 ~~g 91 (91)
T 1na3_A 89 KQG 91 (91)
T ss_dssp HHC
T ss_pred hcC
Confidence 654
No 193
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.11 E-value=0.00048 Score=64.89 Aligned_cols=177 Identities=12% Similarity=-0.027 Sum_probs=95.1
Q ss_pred HHHHHHhccCCC---CCHHHHHHHHHHHHHcC--ChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCc-HHHHHHHHH
Q 047767 469 ELSHQVFEKIPS---PNVVCFTSIMNGYSRNG--MGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGM-VKEGQLVFN 542 (666)
Q Consensus 469 ~~A~~~~~~~~~---~~~~~~~~li~~~~~~~--~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~-~~~a~~~~~ 542 (666)
+++..+++.+.. .+...|+.-.-.+...+ ++++++.+++.+.+.. +-|...|+.-...+...|. ++++++.++
T Consensus 91 ~~EL~~~~~~L~~~PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~ 169 (331)
T 3dss_A 91 KAELGFLESCLRVNPKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTD 169 (331)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHH
Confidence 444444444432 34555555555555555 3566777777666632 2234455554444445555 466666666
Q ss_pred HhHHhhCCCCCchHHHHHHHHHHhc--------------CChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh-------
Q 047767 543 SMKSVYGIDADRQHYSCMIDMLGRA--------------GILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH------- 599 (666)
Q Consensus 543 ~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~------- 599 (666)
.+.+. . +-+...|+.....+.+. +.++++++.++... ..| |...|+-+-..+...
T Consensus 170 ~~I~~-~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~ 247 (331)
T 3dss_A 170 SLITR-N-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELS 247 (331)
T ss_dssp HHHHH-C-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCC
T ss_pred HHHHH-C-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccc
Confidence 66654 1 22355555555444443 34566666666543 333 566665444444333
Q ss_pred ----CChHHHHHHHHHHHhcCCCCcchHHHHHHHH---hhcCCchHHHHHHHHHHh
Q 047767 600 ----GNEIIGRRVANILMELEPVDFAVYSQVSNFY---SEIGEFEVSMQIRETALA 648 (666)
Q Consensus 600 ----~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~---~~~g~~~~A~~~~~~~~~ 648 (666)
+.++++++.++++++..|++..++..++... ...|..++..+.+.++.+
T Consensus 248 ~~~~~~l~~el~~~~elle~~pd~~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~ 303 (331)
T 3dss_A 248 VEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKA 303 (331)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHhhCcccchHHHHHHHHHHhhcccccHHHHHHHHHHHHH
Confidence 3456777777777777777644444433322 234566666667666654
No 194
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=98.10 E-value=6.9e-06 Score=64.90 Aligned_cols=63 Identities=11% Similarity=0.103 Sum_probs=34.0
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
+...|..+...+...|++++|+..++++++.+|+++.+|..++.+|...|++++|+..|++..
T Consensus 18 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~al 80 (115)
T 2kat_A 18 NMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESGL 80 (115)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 344455555555555555555555555555555555555555555555555555555555443
No 195
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.09 E-value=1.8e-05 Score=66.86 Aligned_cols=133 Identities=14% Similarity=0.007 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHcCC-CCCH----HHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC----ch
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQRGL-IPDK----VTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD----RQ 555 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~g~-~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~----~~ 555 (666)
++..+...+...|++++|+..+++..+... .++. .++..+...+...|++++|...+++..+...-.++ ..
T Consensus 11 ~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~ 90 (164)
T 3ro3_A 11 AFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQ 90 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHH
Confidence 456666677777778877777777665210 0111 25666777788888888888888887654211122 45
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CCC----CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCC
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTP----GGG----DCMMWSSLLRSCRVHGNEIIGRRVANILMELEP 617 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p 617 (666)
.+..+..++...|++++|.+.+++.. ..+ ....+..+...+...|++++|.+.++++++...
T Consensus 91 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 160 (164)
T 3ro3_A 91 SCYSLGNTYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISR 160 (164)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHH
Confidence 67778888888999998888887543 111 234677788888899999999999999887544
No 196
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.04 E-value=1.1e-05 Score=78.80 Aligned_cols=66 Identities=6% Similarity=-0.052 Sum_probs=61.8
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+...|..+...+.+.|++++|++.++++++.+|+++.++..++.+|...|++++|++.++++.+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~ 337 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEIDPSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA 337 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhCchhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC
Confidence 567888899999999999999999999999999999999999999999999999999999988754
No 197
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.03 E-value=2.4e-05 Score=78.87 Aligned_cols=159 Identities=10% Similarity=-0.067 Sum_probs=120.8
Q ss_pred HHHHHHcCChhHHHHHHHHHHHcCCCCC----------------HHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC
Q 047767 490 MNGYSRNGMGREALDMLEVMIQRGLIPD----------------KVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553 (666)
Q Consensus 490 i~~~~~~~~~~~a~~~~~~m~~~g~~p~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 553 (666)
.+.+.+.|++++|++.|.++.+..-... ...+..+...|...|++++|.+++..+....+..++
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 3456788999999999999987432111 124677889999999999999999998865333333
Q ss_pred c----hHHHHHHHHHHhcCChHHHHHHHHhCC-------CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhc------
Q 047767 554 R----QHYSCMIDMLGRAGILDKAEELLQQTP-------GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMEL------ 615 (666)
Q Consensus 554 ~----~~~~~l~~~~~~~g~~~~A~~~~~~~~-------~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------ 615 (666)
. .+.+.+...+...|++++|.++++... ..+ -..++..+...+...|++++|...++++...
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 2 234455566677899999999887543 222 3567888999999999999999999998773
Q ss_pred CCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 616 EPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 616 ~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.|....++..++.+|...|++++|..++++...
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~ 203 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAART 203 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHH
Confidence 222356788999999999999999999998764
No 198
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.01 E-value=0.00011 Score=69.47 Aligned_cols=154 Identities=8% Similarity=0.046 Sum_probs=122.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCC-cHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhc-C
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSG-MVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRA-G 568 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g 568 (666)
..+.+..++|++++++++. +.|+.. .|+.--..+...| .+++++++++.+... .|. ..+|+.-..++.+. +
T Consensus 64 ~~~~e~se~AL~lt~~~L~--~nP~~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~---nPKny~aW~hR~wlL~~l~~ 138 (349)
T 3q7a_A 64 AAKEEKSERALELTEIIVR--MNPAHYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQ---NLKSYQVWHHRLLLLDRISP 138 (349)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHT---TCCCHHHHHHHHHHHHHHCC
T ss_pred HHhCCCCHHHHHHHHHHHH--hCchhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHh---CCCcHHHHHHHHHHHHHhcC
Confidence 3444556789999999999 677665 5666666666667 599999999999864 555 66777777777776 7
Q ss_pred -ChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChH--------HHHHHHHHHHhcCCCCcchHHHHHHHHhhcCC--
Q 047767 569 -ILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEI--------IGRRVANILMELEPVDFAVYSQVSNFYSEIGE-- 635 (666)
Q Consensus 569 -~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~-- 635 (666)
++++++++++++. ..| +...|..-.....+.|.++ ++++.++++++.+|.|..+|...+.++.+.|+
T Consensus 139 ~~~~~EL~~~~k~L~~dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~N~SAW~~R~~lL~~l~~~~ 218 (349)
T 3q7a_A 139 QDPVSEIEYIHGSLLPDPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGRNNSAWGWRWYLRVSRPGAE 218 (349)
T ss_dssp SCCHHHHHHHHHHTSSCTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHTTSTTCC
T ss_pred CChHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccccc
Confidence 8899999999876 444 7888888777777766666 89999999999999999999999999999887
Q ss_pred -----chHHHHHHHHHHhCCC
Q 047767 636 -----FEVSMQIRETALARKL 651 (666)
Q Consensus 636 -----~~~A~~~~~~~~~~~~ 651 (666)
++++++.++++.....
T Consensus 219 ~~~~~~~eELe~~~~aI~~~P 239 (349)
T 3q7a_A 219 TSSRSLQDELIYILKSIHLIP 239 (349)
T ss_dssp CCHHHHHHHHHHHHHHHHHCT
T ss_pred cchHHHHHHHHHHHHHHHhCC
Confidence 6888888887765443
No 199
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=98.00 E-value=3.7e-05 Score=57.28 Aligned_cols=69 Identities=12% Similarity=-0.052 Sum_probs=59.7
Q ss_pred CCHHHHHHHHHHHHhhCC---hHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCC
Q 047767 584 GDCMMWSSLLRSCRVHGN---EIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLT 652 (666)
Q Consensus 584 ~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~ 652 (666)
++...+..+..++...++ .++|..+++++++.+|+++.+...+|..+...|++++|+..|+++.+....
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~ 75 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDP 75 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCC
Confidence 466777778887755444 799999999999999999999999999999999999999999999887655
No 200
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=97.96 E-value=2.5e-05 Score=78.90 Aligned_cols=66 Identities=11% Similarity=-0.032 Sum_probs=61.2
Q ss_pred HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 586 CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 586 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
...|..+..++.+.|++++|+..++++++++|+++.+|+.++.+|...|++++|+..|+++.+...
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~P 382 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLDSANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVNP 382 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcCCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC
Confidence 578888999999999999999999999999999999999999999999999999999999887543
No 201
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=97.92 E-value=0.00047 Score=64.96 Aligned_cols=183 Identities=7% Similarity=-0.029 Sum_probs=135.4
Q ss_pred hhCCH-HHHHHHhccCCC--C-CHHHHHHHHHHHHHcCC----------hhHHHHHHHHHHHcCCCC-CHHHHHHHHHHh
Q 047767 464 RCGHI-ELSHQVFEKIPS--P-NVVCFTSIMNGYSRNGM----------GREALDMLEVMIQRGLIP-DKVTFLCVLAGC 528 (666)
Q Consensus 464 ~~g~~-~~A~~~~~~~~~--~-~~~~~~~li~~~~~~~~----------~~~a~~~~~~m~~~g~~p-~~~~~~~l~~~~ 528 (666)
+.|.+ ++|...++.+.. | +...|+.--..+...+. +++++.+++.+.. ..| +..+|+.-...+
T Consensus 41 ~~~e~s~eaL~~t~~~L~~nP~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~--~~PKny~aW~hR~wlL 118 (331)
T 3dss_A 41 QAGELDESVLELTSQILGANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLR--VNPKSYGTWHHRCWLL 118 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHCchhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHH
Confidence 44554 478888887764 3 34455554444433333 5789999999988 445 455676666666
Q ss_pred cCCC--cHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCC-hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh----
Q 047767 529 NHSG--MVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGI-LDKAEELLQQTP-GGG-DCMMWSSLLRSCRVH---- 599 (666)
Q Consensus 529 ~~~g--~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~-~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~---- 599 (666)
...| .++++..+++.+.+. -+-+...|+.-..++...|. ++++++.++++. ..| |...|+.........
T Consensus 119 ~~l~~~~~~~EL~~~~k~l~~--dprNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~p~N~SAW~~R~~ll~~l~~~~ 196 (331)
T 3dss_A 119 SRLPEPNWARELELCARFLEA--DERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHPQP 196 (331)
T ss_dssp HHCSSCCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHHSCCC
T ss_pred hccCcccHHHHHHHHHHHHHh--CCCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHCCCCHHHHHHHHHHHHHhhhcc
Confidence 6666 589999999999976 23347778877788888888 589999988765 444 888898887776655
Q ss_pred ----------CChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc-----------CCchHHHHHHHHHHhCC
Q 047767 600 ----------GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEI-----------GEFEVSMQIRETALARK 650 (666)
Q Consensus 600 ----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-----------g~~~~A~~~~~~~~~~~ 650 (666)
+.++++++.+++++..+|+|..+|+-+.+++... +.++++++.++++.+..
T Consensus 197 ~~~~~~~~~~~~~~eEle~~~~ai~~~P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle~~ 268 (331)
T 3dss_A 197 DSGPQGRLPENVLLKELELVQNAFFTDPNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQELE 268 (331)
T ss_dssp ------CCCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHHHC
T ss_pred ccccccccchHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHhhC
Confidence 4578999999999999999999998887777766 45789999999887644
No 202
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.90 E-value=4e-05 Score=59.82 Aligned_cols=67 Identities=15% Similarity=0.085 Sum_probs=61.7
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
+...|..+...+...|++++|++.++++++.+|+++.++..++.+|...|++++|++.++++.+...
T Consensus 3 ~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p 69 (111)
T 2l6j_A 3 QFEKQKEQGNSLFKQGLYREAVHCYDQLITAQPQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRYTS 69 (111)
T ss_dssp HHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSCS
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCC
Confidence 4567788889999999999999999999999999999999999999999999999999999887544
No 203
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=97.88 E-value=3.5e-05 Score=78.21 Aligned_cols=94 Identities=13% Similarity=0.027 Sum_probs=83.8
Q ss_pred HHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCC
Q 047767 558 SCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGE 635 (666)
Q Consensus 558 ~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~ 635 (666)
..+...+.+.|++++|++.+++.. ..| +...|..+..++...|++++|++.++++++.+|+++.++..++.+|...|+
T Consensus 10 ~~lg~~~~~~g~~~~A~~~~~~Al~~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~p~~~~~~~~lg~~~~~~g~ 89 (477)
T 1wao_1 10 KTQANDYFKAKDYENAIKFYSQAIELNPSNAIYYGNRSLAYLRTECYGYALGDATRAIELDKKYIKGYYRRAASNMALGK 89 (477)
T ss_dssp SSSSSSTTTTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSCTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCC
Confidence 344566788999999999999765 344 688999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHhCCC
Q 047767 636 FEVSMQIRETALARKL 651 (666)
Q Consensus 636 ~~~A~~~~~~~~~~~~ 651 (666)
+++|++.++++.+...
T Consensus 90 ~~eA~~~~~~al~~~p 105 (477)
T 1wao_1 90 FRAALRDYETVVKVKP 105 (477)
T ss_dssp HHHHHHHHHHHHHHST
T ss_pred HHHHHHHHHHHHHhCC
Confidence 9999999999887543
No 204
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=97.86 E-value=0.00011 Score=75.95 Aligned_cols=153 Identities=12% Similarity=0.107 Sum_probs=124.2
Q ss_pred HHcCC-hhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCc----------HHHHHHHHHHhHHhhCCCCC-chHHHHH
Q 047767 494 SRNGM-GREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGM----------VKEGQLVFNSMKSVYGIDAD-RQHYSCM 560 (666)
Q Consensus 494 ~~~~~-~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~----------~~~a~~~~~~~~~~~~~~p~-~~~~~~l 560 (666)
.+.|. .++|++.++++.. +.|+.. .|+.--..+...|+ ++++.+.++.+.+. .|. ..+|..-
T Consensus 39 ~~~~~~~eeal~~~~~~l~--~nP~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~---~pK~y~aW~hR 113 (567)
T 1dce_A 39 RQAGELDESVLELTSQILG--ANPDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRV---NPKSYGTWHHR 113 (567)
T ss_dssp HHTTCCSHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHH---CTTCHHHHHHH
T ss_pred HHcCCCCHHHHHHHHHHHH--HCchhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHh---CCCCHHHHHHH
Confidence 34454 4678999999999 677765 56555555555555 89999999999976 455 7788888
Q ss_pred HHHHHhcC--ChHHHHHHHHhCC-C-CCCHHHHHHHHHHHHhhC-ChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhc--
Q 047767 561 IDMLGRAG--ILDKAEELLQQTP-G-GGDCMMWSSLLRSCRVHG-NEIIGRRVANILMELEPVDFAVYSQVSNFYSEI-- 633 (666)
Q Consensus 561 ~~~~~~~g--~~~~A~~~~~~~~-~-~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~-- 633 (666)
..++.+.| +++++++.++++. . ..+..+|+.-.....+.| .++++++.++++++.+|.|..+|...+.++...
T Consensus 114 ~w~l~~l~~~~~~~el~~~~k~l~~d~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~p~n~saW~~r~~ll~~l~~ 193 (567)
T 1dce_A 114 CWLLSRLPEPNWARELELCARFLEADERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRNFSNYSSWHYRSCLLPQLHP 193 (567)
T ss_dssp HHHHHTCSSCCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTTCCCHHHHHHHHHHHHHHSC
T ss_pred HHHHHHcccccHHHHHHHHHHHHhhccccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHCCCCccHHHHHHHHHHhhcc
Confidence 88888999 7799999999876 3 348889999988888888 899999999999999999999999999998874
Q ss_pred ------------CCchHHHHHHHHHHhCCC
Q 047767 634 ------------GEFEVSMQIRETALARKL 651 (666)
Q Consensus 634 ------------g~~~~A~~~~~~~~~~~~ 651 (666)
+++++|++.++++.....
T Consensus 194 ~~~~~~~~~~~~~~~~eel~~~~~ai~~~P 223 (567)
T 1dce_A 194 QPDSGPQGRLPENVLLKELELVQNAFFTDP 223 (567)
T ss_dssp CCCSSSCCSSCHHHHHHHHHHHHHHHHHCS
T ss_pred cccccccccccHHHHHHHHHHHHHHHhhCC
Confidence 567899999988876443
No 205
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.78 E-value=8.1e-05 Score=55.43 Aligned_cols=66 Identities=17% Similarity=0.288 Sum_probs=60.8
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
+...+..+...+...|++++|+..++++++..|.++.++..++.++...|++++|++.+++..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~ 73 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELDPNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD 73 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC
Confidence 456778888889999999999999999999999999999999999999999999999999988754
No 206
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.77 E-value=3.8e-05 Score=62.88 Aligned_cols=108 Identities=6% Similarity=-0.065 Sum_probs=62.3
Q ss_pred cHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCCh----------HHHHHHHHhCC-CCC-CHHHHHHHHHHHHhh
Q 047767 533 MVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGIL----------DKAEELLQQTP-GGG-DCMMWSSLLRSCRVH 599 (666)
Q Consensus 533 ~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~----------~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~ 599 (666)
.+++|.+.++...+. .|+ ...|..+..++...+++ ++|+..|++.. ..| +...|..+..+|...
T Consensus 17 ~feeA~~~~~~Ai~l---~P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~~~~A~~~LG~ay~~l 93 (158)
T 1zu2_A 17 LFEQIRQDAENTYKS---NPLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPKKDEAVWCIGNAYTSF 93 (158)
T ss_dssp HHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH---CCCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcCcHHHHHHHHHHHHHh
Confidence 445555555555543 333 45555555555555443 36666665543 333 445666666666554
Q ss_pred -----------CChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 600 -----------GNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 600 -----------~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
|++++|++.|+++++++|++......+ . ..++|-++.-.....+
T Consensus 94 g~l~P~~~~a~g~~~eA~~~~~kAl~l~P~~~~y~~al-~------~~~ka~el~~~~~~~~ 148 (158)
T 1zu2_A 94 AFLTPDETEAKHNFDLATQFFQQAVDEQPDNTHYLKSL-E------MTAKAPQLHAEAYKQG 148 (158)
T ss_dssp HHHCCCHHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHH-H------HHHTHHHHHHHHHHSS
T ss_pred cccCcchhhhhccHHHHHHHHHHHHHhCCCCHHHHHHH-H------HHHhCHhccCcccccc
Confidence 589999999999999999875332222 2 2355555555454443
No 207
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.74 E-value=0.00032 Score=57.15 Aligned_cols=112 Identities=11% Similarity=-0.106 Sum_probs=96.1
Q ss_pred CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHh----cCChHH
Q 047767 497 GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGR----AGILDK 572 (666)
Q Consensus 497 ~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~ 572 (666)
+++++|+..|++..+.| .|+.. +...|...+.+++|.++|++..+. -++..+..|...|.. .+++++
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~----g~~~a~~~Lg~~y~~G~g~~~d~~~ 79 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACEL----NSGNGCRFLGDFYENGKYVKKDLRK 79 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcC----CCHHHHHHHHHHHHcCCCCCccHHH
Confidence 47889999999999987 44444 777788888899999999999875 357888889999988 899999
Q ss_pred HHHHHHhCCCCCCHHHHHHHHHHHHh----hCChHHHHHHHHHHHhcCC
Q 047767 573 AEELLQQTPGGGDCMMWSSLLRSCRV----HGNEIIGRRVANILMELEP 617 (666)
Q Consensus 573 A~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~p 617 (666)
|+++|++.....+...+..|...|.. .+|.++|.+.++++.+...
T Consensus 80 A~~~~~~Aa~~g~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g~ 128 (138)
T 1klx_A 80 AAQYYSKACGLNDQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLGS 128 (138)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCCC
Confidence 99999988767888889999999988 8899999999999998754
No 208
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.66 E-value=0.00015 Score=56.90 Aligned_cols=81 Identities=11% Similarity=0.003 Sum_probs=59.8
Q ss_pred HHHHHHHHhHHhhCCCCC-chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHH
Q 047767 536 EGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANIL 612 (666)
Q Consensus 536 ~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 612 (666)
.|++.+++..+ ..|+ ...+..+..+|...|++++|+..+++.. ..| +...|..+...+...|++++|...++++
T Consensus 3 ~a~~~~~~al~---~~p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 3 AITERLEAMLA---QGTDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFDPTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CHHHHHHHHHT---TTCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHH---hCCCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35566666654 3444 6777778888888888888888887654 333 5677888888888888888898888888
Q ss_pred HhcCCCC
Q 047767 613 MELEPVD 619 (666)
Q Consensus 613 ~~~~p~~ 619 (666)
++..|.+
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8877743
No 209
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.60 E-value=6.1e-05 Score=57.31 Aligned_cols=78 Identities=14% Similarity=0.037 Sum_probs=59.7
Q ss_pred HHHHHHhcCChHHHHHHHHhCC-CCC-CHH-HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCc
Q 047767 560 MIDMLGRAGILDKAEELLQQTP-GGG-DCM-MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEF 636 (666)
Q Consensus 560 l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~ 636 (666)
.+..+.+.|++++|++.++++. ..| +.. .|..+...+...|++++|++.++++++.+|+++.++.. +.+
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~--------~~~ 77 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNPDSPALQAR--------KMV 77 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTHHHHH--------HHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCCcHHHHHH--------HHH
Confidence 4567788899999999888765 344 566 78888888899999999999999999999998877633 445
Q ss_pred hHHHHHHHH
Q 047767 637 EVSMQIRET 645 (666)
Q Consensus 637 ~~A~~~~~~ 645 (666)
.++...+++
T Consensus 78 ~~a~~~~~~ 86 (99)
T 2kc7_A 78 MDILNFYNK 86 (99)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHHHHH
Confidence 555555543
No 210
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.53 E-value=0.00023 Score=53.98 Aligned_cols=60 Identities=15% Similarity=0.282 Sum_probs=55.2
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCcc-hHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDFA-VYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~-~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
....+...|++++|+..++++++.+|+++. ++..++.+|...|++++|++.|+++.+...
T Consensus 6 ~a~~~~~~~~~~~A~~~~~~al~~~p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p 66 (99)
T 2kc7_A 6 TIKELINQGDIENALQALEEFLQTEPVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIELNP 66 (99)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCSSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHCCCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCC
Confidence 456678899999999999999999999999 999999999999999999999999887654
No 211
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.51 E-value=0.00035 Score=67.17 Aligned_cols=239 Identities=12% Similarity=0.050 Sum_probs=161.1
Q ss_pred CchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhc
Q 047767 143 LNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222 (666)
Q Consensus 143 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 222 (666)
..+.+|..|..+..+.|.+.+|.+-|=.. .|+..|..+|.+..+.|.+++-+..+...++..-.| ..=+.|+-+|+
T Consensus 52 n~p~VWs~LgkAqL~~~~v~eAIdsyIkA--~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~IDteLi~ayA 127 (624)
T 3lvg_A 52 NEPAVWSQLAKAQLQKGMVKEAIDSYIKA--DDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVETELIFALA 127 (624)
T ss_dssp CCCCCSSSHHHHTTTSSSCTTTTTSSCCC--SCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTTHHHHHHHH
T ss_pred CCccHHHHHHHHHHccCchHHHHHHHHhC--CChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccHHHHHHHHH
Confidence 34567888888888888877776655333 466678888888888899988888887665543333 34456777888
Q ss_pred ccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHHHHhccCC------------------------CCCh
Q 047767 223 IGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAKKSFDFIP------------------------VDDV 278 (666)
Q Consensus 223 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~------------------------~~~~ 278 (666)
+.+++.+.++++ -.||..-...+.+-|...|.++.|.-+|..+. ..++
T Consensus 128 k~~rL~elEefl--------~~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ 199 (624)
T 3lvg_A 128 KTNRLAELEEFI--------NGPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANST 199 (624)
T ss_dssp TSCSSSTTTSTT--------SCCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSS
T ss_pred hhCcHHHHHHHH--------cCCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCCh
Confidence 888776655544 34555555666777777787877777776653 1367
Q ss_pred hhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHH
Q 047767 279 ISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDM 358 (666)
Q Consensus 279 ~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 358 (666)
.+|-.+-.+|...+.+.-|.-.--.+.- .......++..|...|.+++...+++... |++......++.|.-.
T Consensus 200 ktWKeV~~ACvd~~EfrLAqicGLniIv-----hadeL~elv~~YE~~G~f~ELIsLlEagl--glErAHmGmFTELaIL 272 (624)
T 3lvg_A 200 RTWKEVCFACVDGKEFRLAQMCGLHIVV-----HADELEELINYYQDRGYFEELITMLEAAL--GLERAHMGMFTELAIL 272 (624)
T ss_dssp CSHHHHTHHHHHSCTTTTTTHHHHHHHC-----CSSCCSGGGSSSSTTCCCTTSTTTHHHHT--TSTTCCHHHHHHHHHH
T ss_pred hHHHHHHHHHhCchHHHHHHHhcchhcc-----cHHHHHHHHHHHHhCCCHHHHHHHHHHHh--CCCchhHHHHHHHHHH
Confidence 7888888888888877655443222221 11122334555777888888777777665 5665578888999988
Q ss_pred HHhcCChHHHHHHhccCCCC-----------CcccHHHHHHHHHhcCChhHHHH
Q 047767 359 YGKCNVIESSVAVFESAPGR-----------SLECCNSLMTSLLHSGNIKDAVE 401 (666)
Q Consensus 359 ~~~~~~~~~a~~~~~~~~~~-----------~~~~~~~li~~~~~~~~~~~a~~ 401 (666)
|++- +.++..+.++....+ ....|.-++-.|.+-.+++.|..
T Consensus 273 YsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 273 YSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 8886 455555555443322 34468888888888888887653
No 212
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.46 E-value=0.00017 Score=72.65 Aligned_cols=87 Identities=11% Similarity=-0.026 Sum_probs=71.0
Q ss_pred HHHHhcCChHHHHHHHHhCC---------CCCC-HHHHHHHHHHHHhhCChHHHHHHHHHHHh-----cCCCC---cchH
Q 047767 562 DMLGRAGILDKAEELLQQTP---------GGGD-CMMWSSLLRSCRVHGNEIIGRRVANILME-----LEPVD---FAVY 623 (666)
Q Consensus 562 ~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~ 623 (666)
..+..+|++++|+.++++.. ..|+ ..+++.|+.+|...|++++|+.+++++++ +.|++ ...+
T Consensus 317 ~~~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l 396 (490)
T 3n71_A 317 DKARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAV 396 (490)
T ss_dssp HHHHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHH
T ss_pred HHHHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHH
Confidence 44668899999998887542 2332 46888999999999999999999999987 44555 4457
Q ss_pred HHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 624 SQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 624 ~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
++|+.+|..+|++++|+.+++++.+
T Consensus 397 ~nLa~~~~~~G~~~eA~~~~~~Al~ 421 (490)
T 3n71_A 397 MRAGLTNWHAGHIEVGHGMICKAYA 421 (490)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 8999999999999999999998764
No 213
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.41 E-value=0.00029 Score=53.58 Aligned_cols=65 Identities=6% Similarity=-0.150 Sum_probs=48.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
...+..+..+|...|++++|++.|++.. ..| +...|..+..++...|++++|++.+++++++.|.
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~~~ 73 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETDPDYVGTYYHLGKLYERLDRTDDAIDTYAQGIEVARE 73 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSTTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhhhc
Confidence 5667777788888888888888877654 333 5667777888888888888888888888876654
No 214
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.38 E-value=0.00019 Score=70.94 Aligned_cols=85 Identities=12% Similarity=-0.027 Sum_probs=44.1
Q ss_pred CCCcHHHHHHHHHHhHHhh--CCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-HHHHHHHH
Q 047767 530 HSGMVKEGQLVFNSMKSVY--GIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP---------GGGD-CMMWSSLL 593 (666)
Q Consensus 530 ~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~~~~l~ 593 (666)
..|++++|..++++..+.. -+-|+ ..+++.|+.+|..+|++++|+.++++.. ..|+ ..+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 4566777777666655431 11222 3445555666666666666665554332 2222 23455555
Q ss_pred HHHHhhCChHHHHHHHHHHHh
Q 047767 594 RSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 594 ~~~~~~~~~~~a~~~~~~~~~ 614 (666)
..|...|++++|+.+++++++
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 555555555555555555555
No 215
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.0037 Score=59.08 Aligned_cols=136 Identities=10% Similarity=-0.022 Sum_probs=62.0
Q ss_pred CCHHHHHHHHHHHH--HcC---ChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcC----C----CcHHHHHHHHHHhHH
Q 047767 481 PNVVCFTSIMNGYS--RNG---MGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNH----S----GMVKEGQLVFNSMKS 546 (666)
Q Consensus 481 ~~~~~~~~li~~~~--~~~---~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~----~----g~~~~a~~~~~~~~~ 546 (666)
.+...|...+++.. ..+ +..+|..+|++.++ ..|+.. .|..+..++.. . .........++....
T Consensus 192 ~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~--lDP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a~~a 269 (372)
T 3ly7_A 192 HRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQ--SSPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDNIVT 269 (372)
T ss_dssp SSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHH--hCCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHHh
Confidence 45666666665543 333 34678889998888 677643 44433333320 0 000001111111100
Q ss_pred hhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC-CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCC
Q 047767 547 VYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP-GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPV 618 (666)
Q Consensus 547 ~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~ 618 (666)
....+.++.+|..+...+...|++++|+..++++. ..|+...|..+...+...|+.++|.+.+++++.++|.
T Consensus 270 ~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P~ 342 (372)
T 3ly7_A 270 LPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEMSWLNYVLLGKVYEMKGMNREAADAYLTAFNLRPG 342 (372)
T ss_dssp CGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSCS
T ss_pred cccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC
Confidence 00112234444444444444455555555554433 2344444444444444555555555555555555554
No 216
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.30 E-value=0.0016 Score=61.47 Aligned_cols=134 Identities=10% Similarity=0.050 Sum_probs=94.3
Q ss_pred CCCCHHHHHHHHHHhc--C---CCcHHHHHHHHHHhHHhhCCCCC-chHHHHHHHHHHh---cC-C-------hHHHHHH
Q 047767 514 LIPDKVTFLCVLAGCN--H---SGMVKEGQLVFNSMKSVYGIDAD-RQHYSCMIDMLGR---AG-I-------LDKAEEL 576 (666)
Q Consensus 514 ~~p~~~~~~~l~~~~~--~---~g~~~~a~~~~~~~~~~~~~~p~-~~~~~~l~~~~~~---~g-~-------~~~A~~~ 576 (666)
.+.+...|..++++.. . ..+..+|..+|+++.+. .|+ ...|..+..+|.- .+ . ...+.+.
T Consensus 190 ~p~~~~Aydl~Lra~~~l~~~~~~~~~~A~~l~e~Al~l---DP~~a~A~A~la~a~~~~~~~~~~~~~~~~~l~~a~~a 266 (372)
T 3ly7_A 190 LPHRGALLTNFYQAHDYLLHGDDKSLNRASELLGEIVQS---SPEFTYARAEKALVDIVRHSQHPLDEKQLAALNTEIDN 266 (372)
T ss_dssp SCSSGGGHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHH---CTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHh---CCCCHHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHH
Confidence 3445556777776542 2 23468899999999965 788 4555555544431 11 1 1122222
Q ss_pred HHhCCC-CCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCC
Q 047767 577 LQQTPG-GGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKL 651 (666)
Q Consensus 577 ~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~ 651 (666)
...+.. ..+..+|..+...+...|++++|...++++++++| +...|..+++++.-.|+.++|++.++++.....
T Consensus 267 ~~a~~~~~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln~-s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL~P 341 (372)
T 3ly7_A 267 IVTLPELNNLSIIYQIKAVSALVKGKTDESYQAINTGIDLEM-SWLNYVLLGKVYEMKGMNREAADAYLTAFNLRP 341 (372)
T ss_dssp HHTCGGGTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHSC
T ss_pred HHhcccCCcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcCC-CHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC
Confidence 223332 33778888888778888999999999999999997 467788999999999999999999998876544
No 217
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.29 E-value=0.00035 Score=69.24 Aligned_cols=100 Identities=8% Similarity=-0.060 Sum_probs=57.2
Q ss_pred HHHhcCCCcHHHHHHHHHHhHHhh--CCCCC----chHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCC-HHH
Q 047767 525 LAGCNHSGMVKEGQLVFNSMKSVY--GIDAD----RQHYSCMIDMLGRAGILDKAEELLQQTP---------GGGD-CMM 588 (666)
Q Consensus 525 ~~~~~~~g~~~~a~~~~~~~~~~~--~~~p~----~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~-~~~ 588 (666)
+..+.+.|++++|..++++..+.. -+.|+ ..+++.|+.+|..+|++++|+.++++.. ..|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 444556667777777777665431 12222 3456666666666677766666665432 2222 245
Q ss_pred HHHHHHHHHhhCChHHHHHHHHHHHh-----cCCCCcchHH
Q 047767 589 WSSLLRSCRVHGNEIIGRRVANILME-----LEPVDFAVYS 624 (666)
Q Consensus 589 ~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~~~~~~ 624 (666)
++.|...|...|++++|+.+++++++ ..|++|.+-.
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~ 414 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFDIMRVTHGREHSLIED 414 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhcCCCChHHHH
Confidence 66666666666666666666666666 4455554443
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=97.20 E-value=0.0015 Score=64.62 Aligned_cols=62 Identities=8% Similarity=0.102 Sum_probs=40.5
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHh-----cCCCC---cchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILME-----LEPVD---FAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~p~~---~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.+++.|+.+|...|++++|+.+++++++ +.|++ ...+++|+.+|..+|++++|+.+++++.+
T Consensus 341 ~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 341 HMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGRLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHhccCHHHHHHHHHHHHH
Confidence 4666677777777777777777777665 23333 33466677777777777777777776543
No 219
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=97.20 E-value=0.14 Score=52.94 Aligned_cols=115 Identities=13% Similarity=-0.025 Sum_probs=74.2
Q ss_pred CChhHHHHHHHHHHHcC-CCCCHH--HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHH
Q 047767 497 GMGREALDMLEVMIQRG-LIPDKV--TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKA 573 (666)
Q Consensus 497 ~~~~~a~~~~~~m~~~g-~~p~~~--~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A 573 (666)
.+.+.|...|......+ +.+... ....+.......+...++...+...... .++.......+....+.|+++.|
T Consensus 228 ~d~~~A~~~~~~~~~~~~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~e~~~r~Alr~~d~~~a 304 (618)
T 1qsa_A 228 QDAENARLMIPSLAQAQQLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMR---SQSTSLIERRVRMALGTGDRRGL 304 (618)
T ss_dssp HCHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHT---CCCHHHHHHHHHHHHHHTCHHHH
T ss_pred cCHHHHHHHHHhhhhccCCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhcccc---CCChHHHHHHHHHHHHCCCHHHH
Confidence 47788998888886543 222222 2344444556666456666677665432 34444445555556678999999
Q ss_pred HHHHHhCCCCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 574 EELLQQTPGGG--DCMMWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 574 ~~~~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
...|+.|...+ .....--+.++....|+.++|..+|+++.+
T Consensus 305 ~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~ 347 (618)
T 1qsa_A 305 NTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQ 347 (618)
T ss_dssp HHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhc
Confidence 99999988543 232233456667788999999999999875
No 220
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=97.14 E-value=0.054 Score=41.87 Aligned_cols=147 Identities=10% Similarity=0.097 Sum_probs=104.7
Q ss_pred HHHHHH--HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHH
Q 047767 487 TSIMNG--YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDML 564 (666)
Q Consensus 487 ~~li~~--~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~ 564 (666)
..|+.+ +.-.|..++..++..+.... .+..-||.++--....-+-+-..++++.+-.-|.+.+- .....++.+|
T Consensus 9 kkLmeAK~~ildG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiFDis~C-~NlKrVi~C~ 84 (172)
T 1wy6_A 9 RKLMDAKKFLLDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYFDLDKC-QNLKSVVECG 84 (172)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGSCGGGC-SCTHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhcCcHhh-hcHHHHHHHH
Confidence 344544 34568899999999888763 34455666666666666777778888877554333221 2233445555
Q ss_pred HhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHH
Q 047767 565 GRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 565 ~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 644 (666)
.+.|. +.......+.....+|..++-.+++..++...|.+|.....++.+|.+.|+..+|.+++.
T Consensus 85 ~~~n~---------------~se~vd~ALd~lv~~~KkDqLdki~~~~l~n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~ 149 (172)
T 1wy6_A 85 VINNT---------------LNEHVNKALDILVIQGKRDKLEEIGREILKNNEVSASILVAIANALRRVGDERDATTLLI 149 (172)
T ss_dssp HHTTC---------------CCHHHHHHHHHHHHTTCHHHHHHHHHHHC--CCSCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHhcc---------------hHHHHHHHHHHHHHhccHhHHHHHHHHHhccCCCChHHHHHHHHHHHHhcchhhHHHHHH
Confidence 54443 334445566778889999999999999877888889999999999999999999999999
Q ss_pred HHHhCCCC
Q 047767 645 TALARKLT 652 (666)
Q Consensus 645 ~~~~~~~~ 652 (666)
++-++|++
T Consensus 150 ~AC~kG~k 157 (172)
T 1wy6_A 150 EACKKGEK 157 (172)
T ss_dssp HHHHTTCH
T ss_pred HHHHhhhH
Confidence 99999985
No 221
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=97.01 E-value=0.0029 Score=48.29 Aligned_cols=75 Identities=11% Similarity=0.012 Sum_probs=58.7
Q ss_pred CchHHHHHHHHHHhcCChHHHHHHHHhCC---------CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchH
Q 047767 553 DRQHYSCMIDMLGRAGILDKAEELLQQTP---------GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623 (666)
Q Consensus 553 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~---------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 623 (666)
+..-+..|+..+...|++..|+.+++... ..+....+..+..++.+.|+++.|...++++++..|+++.+.
T Consensus 4 sa~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~P~~~~~~ 83 (104)
T 2v5f_A 4 TAEDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELDPEHQRAN 83 (104)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCHHHH
T ss_pred CHHHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcCCCCHHHH
Confidence 34445567777788888888888776543 112466888899999999999999999999999999998887
Q ss_pred HHHH
Q 047767 624 SQVS 627 (666)
Q Consensus 624 ~~l~ 627 (666)
.++.
T Consensus 84 ~n~~ 87 (104)
T 2v5f_A 84 GNLK 87 (104)
T ss_dssp HHHH
T ss_pred hhHH
Confidence 7665
No 222
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=97.00 E-value=0.0022 Score=63.48 Aligned_cols=88 Identities=14% Similarity=0.140 Sum_probs=40.7
Q ss_pred HHHHcCChhHHHHHHHHHHHcC---CCCCH----HHHHHHHHHhcCCCcHHHHHHHHHHhHHhh----C-CCCC-chHHH
Q 047767 492 GYSRNGMGREALDMLEVMIQRG---LIPDK----VTFLCVLAGCNHSGMVKEGQLVFNSMKSVY----G-IDAD-RQHYS 558 (666)
Q Consensus 492 ~~~~~~~~~~a~~~~~~m~~~g---~~p~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~-~~p~-~~~~~ 558 (666)
.+.+.|++++|+.++++..+.. +.|+. .+++.+..+|...|++++|+.+++++..-+ | ..|+ ..+++
T Consensus 296 ~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~l~ 375 (429)
T 3qwp_A 296 ELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQVM 375 (429)
T ss_dssp HHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHH
T ss_pred HHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHHHH
Confidence 3344455555555555554321 11221 134555555555555555555555544321 1 1111 33455
Q ss_pred HHHHHHHhcCChHHHHHHHHh
Q 047767 559 CMIDMLGRAGILDKAEELLQQ 579 (666)
Q Consensus 559 ~l~~~~~~~g~~~~A~~~~~~ 579 (666)
.|...|..+|++++|+.++++
T Consensus 376 nLa~~~~~~g~~~eA~~~~~~ 396 (429)
T 3qwp_A 376 KVGKLQLHQGMFPQAMKNLRL 396 (429)
T ss_dssp HHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHH
Confidence 555555555555555555543
No 223
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.94 E-value=0.003 Score=56.99 Aligned_cols=71 Identities=10% Similarity=-0.069 Sum_probs=50.1
Q ss_pred HHHHHHHHHHHHh-----hCChHHHHHHHHHHHhcCCCC-cchHHHHHHHHhhc-CCchHHHHHHHHHHhCCCCcCCC
Q 047767 586 CMMWSSLLRSCRV-----HGNEIIGRRVANILMELEPVD-FAVYSQVSNFYSEI-GEFEVSMQIRETALARKLTRDIG 656 (666)
Q Consensus 586 ~~~~~~l~~~~~~-----~~~~~~a~~~~~~~~~~~p~~-~~~~~~l~~~~~~~-g~~~~A~~~~~~~~~~~~~~~~~ 656 (666)
...|..++..|.. -|+.++|.+.|+++++++|+. ..+++..++.++.. |++++|.+.+++..+......|+
T Consensus 199 GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~a~~~L~kAL~a~p~~~P~ 276 (301)
T 3u64_A 199 GAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAGFDEALDRALAIDPESVPH 276 (301)
T ss_dssp HHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHHHHHHHHHHHHCCGGGCSS
T ss_pred CHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHHHHHHHHHHHcCCCCCCCC
Confidence 4456666666665 377788888888888888864 77777788777774 77788888887777766654444
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.83 E-value=0.041 Score=60.24 Aligned_cols=102 Identities=9% Similarity=0.082 Sum_probs=70.6
Q ss_pred HHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHH
Q 047767 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541 (666)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 541 (666)
....|+++.|.++.+.+ .+...|..+...+.+.++++.|.+.|.++.+ |..+...+...|+.+...++-
T Consensus 662 ~l~~~~~~~A~~~~~~~--~~~~~W~~la~~al~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~ 730 (814)
T 3mkq_A 662 ALKVGQLTLARDLLTDE--SAEMKWRALGDASLQRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLA 730 (814)
T ss_dssp HHHHTCHHHHHHHHTTC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHH
T ss_pred hhhcCCHHHHHHHHHhh--CcHhHHHHHHHHHHHcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHH
Confidence 45678899998888776 3567889999999999999999999987754 444444455567777666655
Q ss_pred HHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
+..... |. ++.-..+|.+.|++++|++++.++.
T Consensus 731 ~~a~~~-~~------~~~A~~~~~~~g~~~~a~~~~~~~~ 763 (814)
T 3mkq_A 731 KDAETT-GK------FNLAFNAYWIAGDIQGAKDLLIKSQ 763 (814)
T ss_dssp HHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHc-Cc------hHHHHHHHHHcCCHHHHHHHHHHcC
Confidence 555443 21 3444556667778777777776554
No 225
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.77 E-value=0.0099 Score=43.98 Aligned_cols=69 Identities=10% Similarity=-0.064 Sum_probs=55.8
Q ss_pred CCCchHHHHHHHHHHhcCC---hHHHHHHHHhCC-CCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 551 DADRQHYSCMIDMLGRAGI---LDKAEELLQQTP-GGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 551 ~p~~~~~~~l~~~~~~~g~---~~~A~~~~~~~~-~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
+.++..+..+..++...++ .++|..++++.. ..| +...+..++..+...|++++|+..|+++++.+|++
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~dp~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~p~~ 76 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLEPYNEAALSLIANDHFISFRFQEAIDTWVLLLDSNDPN 76 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCCCTT
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHCcCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhCCCC
Confidence 3457778888888865554 789999998765 444 67788888888999999999999999999999984
No 226
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.77 E-value=0.0045 Score=50.00 Aligned_cols=91 Identities=15% Similarity=-0.008 Sum_probs=67.3
Q ss_pred CcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcC---ChHHHHHHHHhCC-CC-C--CHHHHHHHHHHHHhhCChHH
Q 047767 532 GMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAG---ILDKAEELLQQTP-GG-G--DCMMWSSLLRSCRVHGNEII 604 (666)
Q Consensus 532 g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---~~~~A~~~~~~~~-~~-~--~~~~~~~l~~~~~~~~~~~~ 604 (666)
.....+.+-|.+.... + .++..+...+..++++.+ +.++++.++++.. .. | ....+-.+..++.+.|++++
T Consensus 12 ~~l~~~~~~y~~e~~~-~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~ 89 (152)
T 1pc2_A 12 EDLLKFEKKFQSEKAA-G-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEK 89 (152)
T ss_dssp HHHHHHHHHHHHHHHT-T-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHH
T ss_pred HHHHHHHHHHHHHHcc-C-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHH
Confidence 3455666666666553 3 367888888888888888 5668888888655 22 4 34566677788899999999
Q ss_pred HHHHHHHHHhcCCCCcchHH
Q 047767 605 GRRVANILMELEPVDFAVYS 624 (666)
Q Consensus 605 a~~~~~~~~~~~p~~~~~~~ 624 (666)
|.+.++++++.+|++..+..
T Consensus 90 A~~y~~~lL~ieP~n~QA~~ 109 (152)
T 1pc2_A 90 ALKYVRGLLQTEPQNNQAKE 109 (152)
T ss_dssp HHHHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHHhcCCCCHHHHH
Confidence 99999999999998754443
No 227
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.50 E-value=0.0047 Score=49.90 Aligned_cols=80 Identities=11% Similarity=-0.054 Sum_probs=64.3
Q ss_pred HHHHHHHHhCC--CCCCHHHHHHHHHHHHhhC---ChHHHHHHHHHHHhcC-C-CCcchHHHHHHHHhhcCCchHHHHHH
Q 047767 571 DKAEELLQQTP--GGGDCMMWSSLLRSCRVHG---NEIIGRRVANILMELE-P-VDFAVYSQVSNFYSEIGEFEVSMQIR 643 (666)
Q Consensus 571 ~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~~ 643 (666)
..+.+.|.+.. ..++..+...+..++.+.+ +.++++.+++.+++.+ | ++...++.|+-+|++.|++++|.+++
T Consensus 15 ~~~~~~y~~e~~~~~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~~p~~~rd~lY~LAv~~~kl~~Y~~A~~y~ 94 (152)
T 1pc2_A 15 LKFEKKFQSEKAAGSVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKYV 94 (152)
T ss_dssp HHHHHHHHHHHHTTCCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTSCHHHHHHHH
T ss_pred HHHHHHHHHHHccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCccchHHHHHHHHHHHHHccCHHHHHHHH
Confidence 34444444322 3457888888899999877 6779999999999998 7 56889999999999999999999999
Q ss_pred HHHHhCC
Q 047767 644 ETALARK 650 (666)
Q Consensus 644 ~~~~~~~ 650 (666)
+.+.+.-
T Consensus 95 ~~lL~ie 101 (152)
T 1pc2_A 95 RGLLQTE 101 (152)
T ss_dssp HHHHHHC
T ss_pred HHHHhcC
Confidence 9887643
No 228
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.20 E-value=0.017 Score=43.95 Aligned_cols=64 Identities=8% Similarity=-0.027 Sum_probs=54.0
Q ss_pred HHHHHHHHHHHhhCChHHHHHHHHHHHhcC-------CCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCC
Q 047767 587 MMWSSLLRSCRVHGNEIIGRRVANILMELE-------PVDFAVYSQVSNFYSEIGEFEVSMQIRETALARK 650 (666)
Q Consensus 587 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~ 650 (666)
.-...++..+...|++..|+..++++++.. +..+.++..|+.+|.+.|++++|+.+++++.+..
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~l~ 76 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLELD 76 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC
Confidence 334578888999999999999999999843 3346789999999999999999999999887643
No 229
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.92 E-value=0.27 Score=40.76 Aligned_cols=102 Identities=9% Similarity=0.024 Sum_probs=56.1
Q ss_pred HHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHH
Q 047767 462 YSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVF 541 (666)
Q Consensus 462 ~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 541 (666)
....|+++.|.++.+++ .+...|..|.......|+++-|.+.|++..+ |..+.-.|...|+.+...++-
T Consensus 15 AL~lg~l~~A~e~a~~l--~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~~e~L~kla 83 (177)
T 3mkq_B 15 ALEYGNLDAALDEAKKL--NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGDVNKLSKMQ 83 (177)
T ss_dssp HHHTTCHHHHHHHHHHH--CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTCHHHHHHHH
T ss_pred HHhcCCHHHHHHHHHHh--CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCCHHHHHHHH
Confidence 34556666666665554 3455666666666666776666666665443 333333444455555544444
Q ss_pred HHhHHhhCCCCCchHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 542 NSMKSVYGIDADRQHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 542 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
+....+ |- ++.-...+.-.|+++++++++.+..
T Consensus 84 ~iA~~~-g~------~n~af~~~l~lGdv~~~i~lL~~~~ 116 (177)
T 3mkq_B 84 NIAQTR-ED------FGSMLLNTFYNNSTKERSSIFAEGG 116 (177)
T ss_dssp HHHHHT-TC------HHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHC-cc------HHHHHHHHHHcCCHHHHHHHHHHCC
Confidence 443332 21 3444445555666666666665544
No 230
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=95.80 E-value=0.25 Score=53.87 Aligned_cols=41 Identities=17% Similarity=0.136 Sum_probs=20.9
Q ss_pred ccCChHHHHH-HhccCCCCChhhHHHHHHHHHcCCChHHHHHHH
Q 047767 259 ACGSLIEAKK-SFDFIPVDDVISWNSIVSIYADYDLIFDALELF 301 (666)
Q Consensus 259 ~~~~~~~A~~-~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~ 301 (666)
..+++++|.+ ++..++ +......++..+.+.|..+.|+++.
T Consensus 611 ~~~~~~~a~~~~l~~i~--~~~~~~~~~~~l~~~~~~~~a~~~~ 652 (814)
T 3mkq_A 611 LRGEIEEAIENVLPNVE--GKDSLTKIARFLEGQEYYEEALNIS 652 (814)
T ss_dssp HTTCHHHHHHHTGGGCC--CHHHHHHHHHHHHHTTCHHHHHHHC
T ss_pred HhCCHHHHHHHHHhcCC--chHHHHHHHHHHHhCCChHHheecC
Confidence 4556666666 544433 0112255555555666666666543
No 231
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.69 E-value=0.17 Score=39.16 Aligned_cols=89 Identities=15% Similarity=-0.036 Sum_probs=63.2
Q ss_pred HHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHH---HHHHHHhCCCC--C--CHHHHHHHHHHHHhhCChHHHH
Q 047767 534 VKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDK---AEELLQQTPGG--G--DCMMWSSLLRSCRVHGNEIIGR 606 (666)
Q Consensus 534 ~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~---A~~~~~~~~~~--~--~~~~~~~l~~~~~~~~~~~~a~ 606 (666)
...+.+-|...... |. |+..+-..+..++.+..+..+ ++.+++++... | .....-.|..++.+.|++++|.
T Consensus 17 l~~~~~~y~~e~~~-~~-~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~ 94 (126)
T 1nzn_A 17 LLKFEKKFQSEKAA-GS-VSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKAL 94 (126)
T ss_dssp HHHHHHHHHHHHHH-SC-CCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHHHhcc-CC-CcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHH
Confidence 34445555555443 33 777777778888888887665 78888876522 3 2334445677899999999999
Q ss_pred HHHHHHHhcCCCCcchHH
Q 047767 607 RVANILMELEPVDFAVYS 624 (666)
Q Consensus 607 ~~~~~~~~~~p~~~~~~~ 624 (666)
+.++.+++..|+|..+..
T Consensus 95 ~~~~~lL~~eP~n~QA~~ 112 (126)
T 1nzn_A 95 KYVRGLLQTEPQNNQAKE 112 (126)
T ss_dssp HHHHHHHHHCTTCHHHHH
T ss_pred HHHHHHHHhCCCCHHHHH
Confidence 999999999998865544
No 232
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=95.45 E-value=0.54 Score=38.99 Aligned_cols=128 Identities=13% Similarity=0.098 Sum_probs=91.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCCh
Q 047767 491 NGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGIL 570 (666)
Q Consensus 491 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 570 (666)
......|+++.|.++.+++ -+...|..|.......|+++-|.+.|.+... +..+.-.|...|+.
T Consensus 13 ~LAL~lg~l~~A~e~a~~l------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D----------~~~L~~Ly~~tg~~ 76 (177)
T 3mkq_B 13 DLALEYGNLDAALDEAKKL------NDSITWERLIQEALAQGNASLAEMIYQTQHS----------FDKLSFLYLVTGDV 76 (177)
T ss_dssp HHHHHTTCHHHHHHHHHHH------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC----------HHHHHHHHHHHTCH
T ss_pred HHHHhcCCHHHHHHHHHHh------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC----------HHHHHHHHHHhCCH
Confidence 3446789999999998765 3567899999999999999999999988853 56677778888888
Q ss_pred HHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHH-hhcCCchHHHHHHHHH
Q 047767 571 DKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFY-SEIGEFEVSMQIRETA 646 (666)
Q Consensus 571 ~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~ 646 (666)
++-.++-+......+ ++.....+...|++++++++|.+.-. + .++..+ ...|-.+.|.++.+.+
T Consensus 77 e~L~kla~iA~~~g~---~n~af~~~l~lGdv~~~i~lL~~~~r--------~-~eA~~~A~t~g~~~~a~~~~~~~ 141 (177)
T 3mkq_B 77 NKLSKMQNIAQTRED---FGSMLLNTFYNNSTKERSSIFAEGGS--------L-PLAYAVAKANGDEAAASAFLEQA 141 (177)
T ss_dssp HHHHHHHHHHHHTTC---HHHHHHHHHHHTCHHHHHHHHHHTTC--------H-HHHHHHHHHTTCHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHCcc---HHHHHHHHHHcCCHHHHHHHHHHCCC--------h-HHHHHHHHHcCcHHHHHHHHHHh
Confidence 777666554443333 34455667788999999999876322 1 223233 3356777888877655
No 233
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.18 E-value=0.1 Score=41.44 Aligned_cols=104 Identities=12% Similarity=0.088 Sum_probs=59.0
Q ss_pred CHHHHHHHHHHhcCCCcH------HHHHHHHHHhHHhhCCCCCc-hHHHHHHH------HHHhcCChHHHHHHHHhCC--
Q 047767 517 DKVTFLCVLAGCNHSGMV------KEGQLVFNSMKSVYGIDADR-QHYSCMID------MLGRAGILDKAEELLQQTP-- 581 (666)
Q Consensus 517 ~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~~p~~-~~~~~l~~------~~~~~g~~~~A~~~~~~~~-- 581 (666)
|..+|...+....+.|+. ++.+.+|++.... ++|+. ..|...+. .+...++.++|.++|+.+.
T Consensus 12 ~yd~W~~yl~llE~~g~p~~d~~l~rlrd~YerAia~--~Pp~k~~~wrrYI~LWIrYA~~~ei~D~d~aR~vy~~a~~~ 89 (161)
T 4h7y_A 12 NPEDWLSLLLKLEKNSVPLSDALLNKLIGRYSQAIEA--LPPDKYGQNESFARIQVRFAELKAIQEPDDARDYFQMARAN 89 (161)
T ss_dssp SHHHHHHHHHHHHHHTCSCCHHHHHHHHHHHHHHHHH--SCGGGGTTCHHHHHHHHHHHHHHHHHCGGGCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCCchhhHHHHHHHHHHHHHHc--CCccccccHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHH
Confidence 334666666666666777 7777777777764 55541 11111111 1223466777777766553
Q ss_pred CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcch
Q 047767 582 GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622 (666)
Q Consensus 582 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 622 (666)
.+.-...|.....--.++|+.+.|.+++.+++.+.|.+...
T Consensus 90 hKkFAKiwi~~AqFEiRqgnl~kARkILg~AiG~~~k~~~~ 130 (161)
T 4h7y_A 90 CKKFAFVHISFAQFELSQGNVKKSKQLLQKAVERGAVPLEM 130 (161)
T ss_dssp CTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBCHHH
T ss_pred hHHHHHHHHHHHHHHHHcccHHHHHHHHHHHhccCCCcHHH
Confidence 12224455555555566777777777777777777654433
No 234
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=95.16 E-value=0.058 Score=56.63 Aligned_cols=52 Identities=15% Similarity=0.126 Sum_probs=48.4
Q ss_pred HHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 595 SCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 595 ~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
-|...|+++.|+++.+++....|.+..+|..|+.+|...|+++.|+-.+..+
T Consensus 346 FLl~K~~~elAL~~Ak~AV~~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 346 FLLNRGDYELALGVSNTSTELALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHhccCcHHHHHHHHHHHHhcCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 3667899999999999999999999999999999999999999999888755
No 235
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=95.10 E-value=0.037 Score=50.05 Aligned_cols=81 Identities=9% Similarity=0.084 Sum_probs=44.0
Q ss_pred HHHHHHHHHhHHhhCCCCC---chHHHHHHHHHHhc-----CChHHHHHHHHhCC-CCC--CHHHHHHHHHHHHh-hCCh
Q 047767 535 KEGQLVFNSMKSVYGIDAD---RQHYSCMIDMLGRA-----GILDKAEELLQQTP-GGG--DCMMWSSLLRSCRV-HGNE 602 (666)
Q Consensus 535 ~~a~~~~~~~~~~~~~~p~---~~~~~~l~~~~~~~-----g~~~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~-~~~~ 602 (666)
..|...+++..+ +.|+ ...|..|...|... |+.++|.+.|++.. ..| +..++......++. .|+.
T Consensus 180 ~~A~a~lerAle---LDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 180 HAAVMMLERACD---LWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHH---HCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHH---hCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 444444444443 2454 34555556556553 66666666666543 334 24455455555444 3666
Q ss_pred HHHHHHHHHHHhcCCC
Q 047767 603 IIGRRVANILMELEPV 618 (666)
Q Consensus 603 ~~a~~~~~~~~~~~p~ 618 (666)
+++.+.++++++..|.
T Consensus 257 ~~a~~~L~kAL~a~p~ 272 (301)
T 3u64_A 257 AGFDEALDRALAIDPE 272 (301)
T ss_dssp HHHHHHHHHHHHCCGG
T ss_pred HHHHHHHHHHHcCCCC
Confidence 6666666666666654
No 236
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=94.24 E-value=1.5 Score=34.11 Aligned_cols=139 Identities=11% Similarity=-0.046 Sum_probs=81.6
Q ss_pred hcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHHHHHHccCChHHHH
Q 047767 188 ELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALVDFYSACGSLIEAK 267 (666)
Q Consensus 188 ~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~ 267 (666)
-.|..++..++..+.... .+..-|+.+|.-....-+-+...++++.+-+.- |. ..+|++....
T Consensus 19 ldG~v~qGveii~k~~~s---sni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKrVi 81 (172)
T 1wy6_A 19 LDGYIDEGVKIVLEITKS---STKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKSVV 81 (172)
T ss_dssp HTTCHHHHHHHHHHHHHH---SCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHHHH
T ss_pred HhhhHHHHHHHHHHHcCC---CCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHHHH
Confidence 356666666666665543 233444444444433334344444443332221 11 1233333333
Q ss_pred HHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 047767 268 KSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFASRTGNVYFGKQIHGYVTKLGFD 345 (666)
Q Consensus 268 ~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 345 (666)
..+-.+.. +....+..+..+..+|+.++-.+++..+.. +.+|++.....+..+|.+.|+..++..++.++-+.|++
T Consensus 82 ~C~~~~n~-~se~vd~ALd~lv~~~KkDqLdki~~~~l~-n~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~kG~k 157 (172)
T 1wy6_A 82 ECGVINNT-LNEHVNKALDILVIQGKRDKLEEIGREILK-NNEVSASILVAIANALRRVGDERDATTLLIEACKKGEK 157 (172)
T ss_dssp HHHHHTTC-CCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHhcc-hHHHHHHHHHHHHHhccHhHHHHHHHHHhc-cCCCChHHHHHHHHHHHHhcchhhHHHHHHHHHHhhhH
Confidence 33322221 444566777888888988888888888543 45677888888888999999988888888888887765
No 237
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=93.95 E-value=3.8 Score=37.79 Aligned_cols=135 Identities=9% Similarity=0.004 Sum_probs=85.9
Q ss_pred HHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHH----HHHhHhcCCCCChhhHHHHHHH
Q 047767 247 IFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALEL----FFRMQLCRKRPSIRSFVEFLNF 322 (666)
Q Consensus 247 ~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~----~~~m~~~~~~p~~~t~~~ll~~ 322 (666)
...|.++..-|.+.+++++|.+++.. -...+.+.|+...|-++ ++...+.+++++..+...++..
T Consensus 33 hQ~~Rtl~~Ry~~~~~~~eAidlL~~-----------ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~l 101 (312)
T 2wpv_A 33 HQTLRTIANRYVRSKSYEHAIELISQ-----------GALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVRL 101 (312)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 34455566667788888888876532 23345667777666654 4555667889998888888877
Q ss_pred HhccCChh-hHHHHHHHHHH----hC-CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHh
Q 047767 323 ASRTGNVY-FGKQIHGYVTK----LG-FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLH 392 (666)
Q Consensus 323 ~~~~~~~~-~a~~~~~~~~~----~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~ 392 (666)
+......+ .-.++.+.+++ .| .+.+++.....+...|.+.|++.+|...|-.....+...+..++.-+..
T Consensus 102 ~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~ 177 (312)
T 2wpv_A 102 IAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLC 177 (312)
T ss_dssp HTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHH
T ss_pred HHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHH
Confidence 76633222 22344444443 32 2455889999999999999999999988763322234444444443333
No 238
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=93.91 E-value=8.4 Score=41.56 Aligned_cols=261 Identities=11% Similarity=-0.018 Sum_probs=134.2
Q ss_pred HHHHHccCChHHHHHHhccCCC----CChh--hHHHHHHHHHcCCChHHHHHHHHHhHhcCC--CCC---h-hh-HHHHH
Q 047767 254 VDFYSACGSLIEAKKSFDFIPV----DDVI--SWNSIVSIYADYDLIFDALELFFRMQLCRK--RPS---I-RS-FVEFL 320 (666)
Q Consensus 254 ~~~~~~~~~~~~A~~~~~~~~~----~~~~--~~~~li~~~~~~g~~~~a~~~~~~m~~~~~--~p~---~-~t-~~~ll 320 (666)
.-+....|+.+++...+..-.. .+.. .-..+.-+....|..+++..++.......- .-+ . .. -..+-
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLG 460 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLG 460 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHH
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHH
Confidence 3446677888888888877653 1222 222334456667766778887777654321 000 1 11 11111
Q ss_pred HHH--hccCChhhHHHHHHHHHHhCCCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCC-Cccc--HHHHHHHHHhcCC
Q 047767 321 NFA--SRTGNVYFGKQIHGYVTKLGFDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGR-SLEC--CNSLMTSLLHSGN 395 (666)
Q Consensus 321 ~~~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-~~~~--~~~li~~~~~~~~ 395 (666)
-++ ...++. ++...+..+....-.........++...+.-.|+-+....++..+... +... ...+.-++...|+
T Consensus 461 LGla~~GS~~e-ev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 461 IGLAAMGSANI-EVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHSTTCCCH-HHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHhcCCCCH-HHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 122 223333 333334333332100000122224444555567766666665543221 1112 2233344557788
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHh
Q 047767 396 IKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVF 475 (666)
Q Consensus 396 ~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 475 (666)
.+.+..+++.+... ..|-...-..+..+++|+..|+......++..+.... ..+....-.+.-++...|+.+.+.+++
T Consensus 540 ~e~~~~li~~L~~~-~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rlv 617 (963)
T 4ady_A 540 QELADDLITKMLAS-DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRIV 617 (963)
T ss_dssp GGGGHHHHHHHHHC-SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHHT
T ss_pred hHHHHHHHHHHHhC-CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHHH
Confidence 88888888888764 2333333333444556889999888888888777542 222332222333344456666677777
Q ss_pred ccCCC---CCHHHHHHHHHHHHHcCCh-hHHHHHHHHHHHcCCCCCHHH
Q 047767 476 EKIPS---PNVVCFTSIMNGYSRNGMG-REALDMLEVMIQRGLIPDKVT 520 (666)
Q Consensus 476 ~~~~~---~~~~~~~~li~~~~~~~~~-~~a~~~~~~m~~~g~~p~~~~ 520 (666)
+.+.+ |.+..-..+.-+....|.. .+++.++..+.. .+|..+
T Consensus 618 ~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~~---D~d~~V 663 (963)
T 4ady_A 618 QLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK---DPVDFV 663 (963)
T ss_dssp TTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT---CSSHHH
T ss_pred HHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc---CCCHHH
Confidence 65442 3333333444445555554 578888888864 455543
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=93.91 E-value=0.11 Score=40.27 Aligned_cols=81 Identities=12% Similarity=-0.049 Sum_probs=61.3
Q ss_pred hHHHHHHHHhCC--CCCCHHHHHHHHHHHHhhCChHH---HHHHHHHHHhcC-C-CCcchHHHHHHHHhhcCCchHHHHH
Q 047767 570 LDKAEELLQQTP--GGGDCMMWSSLLRSCRVHGNEII---GRRVANILMELE-P-VDFAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 570 ~~~A~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~~-p-~~~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
...+.+-+.+.. ..++..+-..+.+++.+..+... ++.+++.+.... | ......+.|+-++++.|+|++|.+.
T Consensus 17 l~~~~~~y~~e~~~~~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~~p~~~Rd~lY~LAvg~yklg~Y~~A~~~ 96 (126)
T 1nzn_A 17 LLKFEKKFQSEKAAGSVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKGSKEEQRDYVFYLAVGNYRLKEYEKALKY 96 (126)
T ss_dssp HHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHHhccCCCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHhhhHHHHHHH
Confidence 334444444332 24667777778888888776555 999999999977 5 4677889999999999999999999
Q ss_pred HHHHHhCC
Q 047767 643 RETALARK 650 (666)
Q Consensus 643 ~~~~~~~~ 650 (666)
++.+.+..
T Consensus 97 ~~~lL~~e 104 (126)
T 1nzn_A 97 VRGLLQTE 104 (126)
T ss_dssp HHHHHHHC
T ss_pred HHHHHHhC
Confidence 99887643
No 240
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=93.35 E-value=5.1 Score=37.26 Aligned_cols=135 Identities=12% Similarity=0.022 Sum_probs=86.4
Q ss_pred HHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHH----HHhHhcCCCCChhhHHHHHHHH
Q 047767 248 FVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELF----FRMQLCRKRPSIRSFVEFLNFA 323 (666)
Q Consensus 248 ~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~----~~m~~~~~~p~~~t~~~ll~~~ 323 (666)
.++.++..-|.+.+++++|.+++.. -...+.+.|+...+-++. +...+.++++|..+...++..+
T Consensus 36 Q~~RTi~~Ry~~~k~y~eAidLL~~-----------GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L~ 104 (336)
T 3lpz_A 36 QETRLVAARYSKQGNWAAAVDILAS-----------VSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGCL 104 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHH-----------HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHH-----------HHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHHH
Confidence 3455566667888888888876522 233456677776665554 5556778999998888888887
Q ss_pred hccCChh-hHHHHHHHHH----HhC-CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhc
Q 047767 324 SRTGNVY-FGKQIHGYVT----KLG-FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHS 393 (666)
Q Consensus 324 ~~~~~~~-~a~~~~~~~~----~~~-~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~ 393 (666)
......+ .-..+.+.++ +.| .+.+++.....+...|.+.+++.+|...|-...+..+..+..++.-+...
T Consensus 105 ~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~ 180 (336)
T 3lpz_A 105 RLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQ 180 (336)
T ss_dssp TTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHT
T ss_pred HhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHh
Confidence 7655322 1233333333 333 35558899999999999999999999988432222234554444444333
No 241
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=93.21 E-value=0.21 Score=48.56 Aligned_cols=65 Identities=8% Similarity=-0.062 Sum_probs=46.7
Q ss_pred HHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHh-----CCCCcCC
Q 047767 591 SLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALA-----RKLTRDI 655 (666)
Q Consensus 591 ~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-----~~~~~~~ 655 (666)
.++.++...|++++++..++.++..+|-+...|..|+.+|.+.|+..+|++.|+.+.. .|++|.|
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~ 245 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEHPYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGP 245 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCH
Confidence 3455566777777777777777777777777777778888888888888777776643 3665544
No 242
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.91 E-value=9.7 Score=39.29 Aligned_cols=372 Identities=9% Similarity=-0.049 Sum_probs=177.2
Q ss_pred CchHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCCChHHHHHHHHHhHhcCCCCChhhHHHHHHHH
Q 047767 244 DVNIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYDLIFDALELFFRMQLCRKRPSIRSFVEFLNFA 323 (666)
Q Consensus 244 ~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~ 323 (666)
+.....-..-+..+.+.+++......+.. +..+...-.....+....|+..+|....+.+-..| ...+.....++..+
T Consensus 69 p~~~~Lr~~~l~~l~~~~~w~~~l~~~~~-~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~ 146 (618)
T 1qsa_A 69 PPARTLQSRFVNELARREDWRGLLAFSPE-KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVW 146 (618)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHCCS-CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHhCCCHHHHHHhccC-CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHH
Confidence 33444555566667777788887776666 44455555556667777788777777666664443 23344555666666
Q ss_pred hccCChhh--HHHHHHHHHHhC-----------CCCCchhHHhHHHHHHHhcCChHHHHHHhccCCCCCcc---cHHHHH
Q 047767 324 SRTGNVYF--GKQIHGYVTKLG-----------FDHGSVHVQSALTDMYGKCNVIESSVAVFESAPGRSLE---CCNSLM 387 (666)
Q Consensus 324 ~~~~~~~~--a~~~~~~~~~~~-----------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~---~~~~li 387 (666)
.+.|.+.. ...=+..+...| +.++.......++..+... ..+........ ++.. .+...+
T Consensus 147 ~~~g~lt~~~~~~R~~~al~~~~~~~a~~l~~~l~~~~~~~a~~~~al~~~p---~~~~~~~~~~~-~~~~~~~~~~~~~ 222 (618)
T 1qsa_A 147 RASGKQDPLAYLERIRLAMKAGNTGLVTVLAGQMPADYQTIASAIISLANNP---NTVLTFARTTG-ATDFTRQMAAVAF 222 (618)
T ss_dssp HHTTCSCHHHHHHHHHHHHHTTCHHHHHHHHHTCCGGGHHHHHHHHHHHHCG---GGHHHHHHHSC-CCHHHHHHHHHHH
T ss_pred HHCCCCCHHHHHHHHHHHHHCCCHHHHHHHHHhCCHHHHHHHHHHHHHHhCh---HhHHHHHhccC-CChhhHHHHHHHH
Confidence 55444322 111111111111 1110111112222222211 12222221111 1111 111122
Q ss_pred HHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchh--hhhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhh
Q 047767 388 TSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKAL--SVSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC 465 (666)
Q Consensus 388 ~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~--~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 465 (666)
.-+.+ .+.+.|...+......+ ..+......+-..+ .....+....+...+....... .+.....-.+....+.
T Consensus 223 ~rlar-~d~~~A~~~~~~~~~~~-~~~~~~~~~~~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~ 298 (618)
T 1qsa_A 223 ASVAR-QDAENARLMIPSLAQAQ-QLNEDQIQELRDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGT 298 (618)
T ss_dssp HHHHH-HCHHHHHHHHHHHHHHT-TCCHHHHHHHHHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHH
T ss_pred HHHHh-cCHHHHHHHHHhhhhcc-CCCHHHHHHHHHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHC
Confidence 23333 36788888888886543 22333322222221 1233332334444444433332 2222333444455677
Q ss_pred CCHHHHHHHhccCCCC---CHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHH
Q 047767 466 GHIELSHQVFEKIPSP---NVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFN 542 (666)
Q Consensus 466 g~~~~A~~~~~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~ 542 (666)
|+++.|...|+.+... .....-=+.+++...|+.++|..+|+.+... . +|-.++.+ .+.|..-.
T Consensus 299 ~d~~~a~~~~~~l~~~~~~~~r~~YW~~ra~~~~g~~~~a~~~~~~~a~~---~---~fYg~lAa-~~Lg~~~~------ 365 (618)
T 1qsa_A 299 GDRRGLNTWLARLPMEAKEKDEWRYWQADLLLERGREAEAKEILHQLMQQ---R---GFYPMVAA-QRIGEEYE------ 365 (618)
T ss_dssp TCHHHHHHHHHHSCTTGGGSHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS---C---SHHHHHHH-HHTTCCCC------
T ss_pred CCHHHHHHHHHHccccccccHhHHHHHHHHHHHcCCHHHHHHHHHHHhcC---C---ChHHHHHH-HHcCCCCC------
Confidence 9999999999988752 2222333556777889999999999888642 2 23222211 11111000
Q ss_pred HhHHhhCCCCC-ch-----HHHHHHHHHHhcCChHHHHHHHHhCCCCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 543 SMKSVYGIDAD-RQ-----HYSCMIDMLGRAGILDKAEELLQQTPGGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 543 ~~~~~~~~~p~-~~-----~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
.... .+.+. .. .-..-+..+...|....|...+..+....+......+.......|..+.++....+....+
T Consensus 366 -~~~~-~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~~~~~~~~~la~~a~~~~~~~~~v~~~~~~~~~~ 443 (618)
T 1qsa_A 366 -LKID-KAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKSKSKTEQAQLARYAFNNQWWDLSVQATIAGKLWD 443 (618)
T ss_dssp -CCCC-CCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHTTCTT
T ss_pred -CCCC-CCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCChHHHHHHHHHHHhhc
Confidence 0000 00110 11 1112345567888888888777665433444444444444556777777776554432211
Q ss_pred C---CCcchHHHHHHHHhhcCCchHHH
Q 047767 617 P---VDFAVYSQVSNFYSEIGEFEVSM 640 (666)
Q Consensus 617 p---~~~~~~~~l~~~~~~~g~~~~A~ 640 (666)
. .-|..|...+.-+.+.-.++.++
T Consensus 444 ~~~~~~P~~y~~~i~~~a~~~gv~~~l 470 (618)
T 1qsa_A 444 HLEERFPLAYNDLFKRYTSGKEIPQSY 470 (618)
T ss_dssp CHHHHSCCTTHHHHHHHHTTSSSCHHH
T ss_pred chhhhCCcchHHHHHHHHHHcCCCHHH
Confidence 0 01234555555555554555444
No 243
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=92.15 E-value=0.93 Score=36.92 Aligned_cols=121 Identities=12% Similarity=0.069 Sum_probs=59.7
Q ss_pred cCCCCCHHH--HHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCc-------hHHHHHHHHHHhcCChHHHHHHHHhCC-
Q 047767 512 RGLIPDKVT--FLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADR-------QHYSCMIDMLGRAGILDKAEELLQQTP- 581 (666)
Q Consensus 512 ~g~~p~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~-------~~~~~l~~~~~~~g~~~~A~~~~~~~~- 581 (666)
.|+.|.... +..-+..+...|.++.|+-+.+.+....+.+|+. .++..+++++...|++..|...|++..
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 455555443 3333445666677777777666655443333442 245556666677777777766665432
Q ss_pred ------CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHH
Q 047767 582 ------GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 582 ------~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
..+.. ...+. ...... .-.. .+.+.++-+.++.+|.+.|++++|+.+++.+
T Consensus 92 ~~k~l~k~~s~--~~~~~----~~ss~p-------~s~~-~~~e~Elkykia~C~~~l~~~~~Ai~~Le~I 148 (167)
T 3ffl_A 92 QKKALSKTSKV--RPSTG----NSASTP-------QSQC-LPSEIEVKYKLAECYTVLKQDKDAIAILDGI 148 (167)
T ss_dssp HHHCC---------------------------------C-CCCHHHHHHHHHHHHHHTTCHHHHHHHHHTS
T ss_pred HHHHHhcCCCc--ccccc----ccCCCc-------cccc-ccchHHHHHHHHHHHHHHCCHHHHHHHHhcC
Confidence 11111 00000 000000 0001 1234467788999999999999999998754
No 244
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=91.85 E-value=1.6 Score=34.49 Aligned_cols=72 Identities=17% Similarity=0.050 Sum_probs=54.7
Q ss_pred CCCchHHHHHHHHHHhcCChH---HHHHHHHhCC-CCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcch
Q 047767 551 DADRQHYSCMIDMLGRAGILD---KAEELLQQTP-GGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAV 622 (666)
Q Consensus 551 ~p~~~~~~~l~~~~~~~g~~~---~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~ 622 (666)
.|+..+--.+..++.+..+.+ +++.+++++. ..| .....-.|..++.+.|++++|.+..+.+++..|+|..+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~eP~n~QA 113 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQV 113 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHTCCCCHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCcHHH
Confidence 577788888888999888654 5777777654 334 23444456778899999999999999999999987543
No 245
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=91.10 E-value=0.97 Score=36.81 Aligned_cols=29 Identities=10% Similarity=-0.007 Sum_probs=20.7
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCCCC
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTPGG 583 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 583 (666)
+.--.+..+|.+.|++++|+.+++.++.+
T Consensus 123 Elkykia~C~~~l~~~~~Ai~~Le~Ip~k 151 (167)
T 3ffl_A 123 EVKYKLAECYTVLKQDKDAIAILDGIPSR 151 (167)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHTSCGG
T ss_pred HHHHHHHHHHHHHCCHHHHHHHHhcCCch
Confidence 44445777788888888888888877733
No 246
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.72 E-value=0.71 Score=35.92 Aligned_cols=73 Identities=16% Similarity=0.019 Sum_probs=54.4
Q ss_pred CCCchHHHHHHHHHHhcCCh---HHHHHHHHhCC-CCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchH
Q 047767 551 DADRQHYSCMIDMLGRAGIL---DKAEELLQQTP-GGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVY 623 (666)
Q Consensus 551 ~p~~~~~~~l~~~~~~~g~~---~~A~~~~~~~~-~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~ 623 (666)
.|++.+--.++.++.+..+. .+++.+++++. ..| ....+-.|..++.+.|++++|.+..+.+++..|+|..+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~eP~N~QA~ 115 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEHERNNKQVG 115 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTCTTCHHHH
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhhCCCCHHHH
Confidence 56777777788888888765 45777777654 334 244555677788999999999999999999999875443
No 247
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=90.02 E-value=1.8 Score=33.63 Aligned_cols=45 Identities=9% Similarity=0.147 Sum_probs=22.7
Q ss_pred HHHHHHHHHHhcCCC-CcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 604 IGRRVANILMELEPV-DFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 604 ~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
+++.+++.+....|. ....++.|+-++.+.|++++|.++.+.+.+
T Consensus 61 ~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~ 106 (134)
T 3o48_A 61 LGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 106 (134)
T ss_dssp HHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 455555555554442 244445555555555555555555554443
No 248
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=89.83 E-value=2.7 Score=33.14 Aligned_cols=66 Identities=8% Similarity=0.033 Sum_probs=38.5
Q ss_pred CCCHHHHHHHHHHHHhhC---ChHHHHHHHHHHHhcCCC-CcchHHHHHHHHhhcCCchHHHHHHHHHHh
Q 047767 583 GGDCMMWSSLLRSCRVHG---NEIIGRRVANILMELEPV-DFAVYSQVSNFYSEIGEFEVSMQIRETALA 648 (666)
Q Consensus 583 ~~~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~ 648 (666)
.|...+-..+.+++.+.. +..+++.+++.+....|. .....+.|+-.+++.|+|++|.++.+.+.+
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~ 105 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE 105 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh
Confidence 344444445555555443 344566666666666553 345556666666666666666666666654
No 249
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=89.74 E-value=6.6 Score=31.35 Aligned_cols=55 Identities=13% Similarity=0.077 Sum_probs=38.0
Q ss_pred CCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCch
Q 047767 190 SRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVN 246 (666)
Q Consensus 190 ~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 246 (666)
+|+++|.++|+.+...+-+- ...|......-.+.|++..|.+++...+..+ ..|.
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~-~k~~ 128 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG-AVPL 128 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT-CBCH
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC-CCcH
Confidence 78888888888887652222 4444444444567889999999999888887 4443
No 250
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=88.98 E-value=19 Score=35.51 Aligned_cols=172 Identities=9% Similarity=0.027 Sum_probs=85.0
Q ss_pred HHHHHHHHcCCChHHHHHHHHHhHhcCCCCCh-----hhHHHHHHHHhccCChhhHHHHHHHHHHh---CCCCCc--hhH
Q 047767 282 NSIVSIYADYDLIFDALELFFRMQLCRKRPSI-----RSFVEFLNFASRTGNVYFGKQIHGYVTKL---GFDHGS--VHV 351 (666)
Q Consensus 282 ~~li~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~t~~~ll~~~~~~~~~~~a~~~~~~~~~~---~~~~~~--~~~ 351 (666)
..|...|...|++.+|.+++..+...-...+. ..+...+..|...+++..|..+...+... ...+++ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 45677788888999998888887542111221 23455556666677777777776665432 111101 123
Q ss_pred HhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhccc
Q 047767 352 QSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSASA 431 (666)
Q Consensus 352 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~~ 431 (666)
+...+..+...+++.+|.+.| ..+...+...++.......+..+.- ..+ .+..+
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y-----------~e~~~~~~~~~d~~~~~~~L~~~v~--------------~~i-La~~~ 274 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYL-----------QEIYQTDAIKSDEAKWKPVLSHIVY--------------FLV-LSPYG 274 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHH-----------HHHHHHHHHHSCHHHHHHHHHHHHH--------------HHH-HSSCS
T ss_pred HHHHHHHHHHhhhHHHHHHHH-----------HHHHhcccccCCHHHHHHHHHHHHH--------------HHH-hCCCC
Confidence 334444444455555544433 2222333333333332222222211 000 11111
Q ss_pred chhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhh--CCHHHHHHHhccCCCC
Q 047767 432 NLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRC--GHIELSHQVFEKIPSP 481 (666)
Q Consensus 432 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--g~~~~A~~~~~~~~~~ 481 (666)
. .-..+.........-++...+..++.+|... .+++...+.|.....+
T Consensus 275 -~-~~~~ll~~~~~~~~~~~l~~~~~L~k~f~~~~L~~~~~~~~~~~~~L~~ 324 (445)
T 4b4t_P 275 -N-LQNDLIHKIQNDNNLKKLESQESLVKLFTTNELMRWPIVQKTYEPVLNE 324 (445)
T ss_dssp -S-TTHHHHHSHHHHSSCHHHHHHHHHHHHHHHCCSSSHHHHHHHTCSSTTT
T ss_pred -c-hHHHHHHHHhhcccccccHHHHHHHHHHHhchHhhhHHHHHHHHHHhcc
Confidence 1 1112222222333335667788888888764 4678888888776643
No 251
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=88.47 E-value=31 Score=37.35 Aligned_cols=252 Identities=12% Similarity=0.023 Sum_probs=127.0
Q ss_pred HHHHHhcCChHHHHHHhccCCCC----Ccc--cHHHHHHHHHhcCChhHHHHHHHHHHHcCC--CCC---H-HHHHHHhc
Q 047767 356 TDMYGKCNVIESSVAVFESAPGR----SLE--CCNSLMTSLLHSGNIKDAVEMFGFMVDEGI--GLD---E-VTLSTTLK 423 (666)
Q Consensus 356 ~~~~~~~~~~~~a~~~~~~~~~~----~~~--~~~~li~~~~~~~~~~~a~~~~~~m~~~~~--~p~---~-~~~~~ll~ 423 (666)
.-+....|+.+++..+++..... +.. .-..+.-+....|..++++.++.......- .-+ . ......+
T Consensus 381 SLGlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaL- 459 (963)
T 4ady_A 381 SLGVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASL- 459 (963)
T ss_dssp HHHHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHH-
T ss_pred HhhhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHH-
Confidence 33455667777888888776542 211 122233445566666677777776554321 000 1 1111111
Q ss_pred hhh--hhcccchhhHHHHHHHHHHhCCCCchHHHHHHHHHHHhhCCHHHHHHHhccCCC-CCHHHHHHH--HHHHHHcCC
Q 047767 424 ALS--VSASANLGSCRLLHCCAIKSGFESNIAVSCSLMDAYSRCGHIELSHQVFEKIPS-PNVVCFTSI--MNGYSRNGM 498 (666)
Q Consensus 424 ~~~--~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~-~~~~~~~~l--i~~~~~~~~ 498 (666)
++. +...++.+....+...+....-......--++...+.-.|+-+....++..+.+ .+......+ .-++...|+
T Consensus 460 GLGla~~GS~~eev~e~L~~~L~dd~~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 460 GIGLAAMGSANIEVYEALKEVLYNDSATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQHGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHHHHSTTCCCHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCSCHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHhcCCCCHHHHHHHHHHHhcCCHHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccCcHHHHHHHHHHHHhhhCCC
Confidence 222 233344333333333333221000001111233334455666666665554332 222333333 334456789
Q ss_pred hhHHHHHHHHHHHcCCCCCHH-HHH---HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhcCChHHHH
Q 047767 499 GREALDMLEVMIQRGLIPDKV-TFL---CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRAGILDKAE 574 (666)
Q Consensus 499 ~~~a~~~~~~m~~~g~~p~~~-~~~---~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~A~ 574 (666)
.+.+..+++.+... .+.. -|. ++.-+|+..|+.....+++..+... ...++.-...+.-++...|+.+.+.
T Consensus 540 ~e~~~~li~~L~~~---~dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d--~~d~VRraAViaLGlI~~g~~e~v~ 614 (963)
T 4ady_A 540 QELADDLITKMLAS---DESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSD--SNDDVRRAAVIALGFVLLRDYTTVP 614 (963)
T ss_dssp GGGGHHHHHHHHHC---SCHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHC--SCHHHHHHHHHHHHHHTSSSCSSHH
T ss_pred hHHHHHHHHHHHhC---CCHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccC--CcHHHHHHHHHHHHhhccCCHHHHH
Confidence 89888888888762 2332 333 3445788889988877788888763 2223443344444555677777677
Q ss_pred HHHHhCCCCCCHHHHHH--HHHHHHhhCCh-HHHHHHHHHHH
Q 047767 575 ELLQQTPGGGDCMMWSS--LLRSCRVHGNE-IIGRRVANILM 613 (666)
Q Consensus 575 ~~~~~~~~~~~~~~~~~--l~~~~~~~~~~-~~a~~~~~~~~ 613 (666)
++++.+....|..+-.. +..+....|+. .+++..+..+.
T Consensus 615 rlv~~L~~~~d~~VR~gAalALGli~aGn~~~~aid~L~~L~ 656 (963)
T 4ady_A 615 RIVQLLSKSHNAHVRCGTAFALGIACAGKGLQSAIDVLDPLT 656 (963)
T ss_dssp HHTTTGGGCSCHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHH
T ss_pred HHHHHHHhcCCHHHHHHHHHHHHHhccCCCcHHHHHHHHHHc
Confidence 77765553344433332 33333334443 56777777765
No 252
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=87.28 E-value=6.7 Score=28.42 Aligned_cols=88 Identities=16% Similarity=0.120 Sum_probs=63.9
Q ss_pred CCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHH
Q 047767 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM 202 (666)
Q Consensus 123 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 202 (666)
....++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-. .+.|-.+++...+.++
T Consensus 19 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~l 94 (115)
T 2uwj_G 19 QHCHEEALCIAEWLERLGQ--DEAARLIRISSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGL 94 (115)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHH
Confidence 3467788888877776653 33333344556788999999999999999999999887765 4778888888888788
Q ss_pred HHcCCCCCHhhHH
Q 047767 203 KAEGVEPNGLSFC 215 (666)
Q Consensus 203 ~~~~~~p~~~t~~ 215 (666)
...| .|....|.
T Consensus 95 a~sg-~p~~q~Fa 106 (115)
T 2uwj_G 95 GGSS-DPALADFA 106 (115)
T ss_dssp HTCS-SHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7765 44444443
No 253
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.95 E-value=19 Score=33.39 Aligned_cols=171 Identities=13% Similarity=0.111 Sum_probs=102.3
Q ss_pred hhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHHH----HHHHHcCCCCCHHHHHHHhch
Q 047767 349 VHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEMF----GFMVDEGIGLDEVTLSTTLKA 424 (666)
Q Consensus 349 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~----~~m~~~~~~p~~~~~~~ll~~ 424 (666)
...+.++..=|.+.+++++|.+++ ..-...+.+.|+...+-++- +-..+.++++|..+...++..
T Consensus 35 HQ~~RTi~~Ry~~~k~y~eAidLL-----------~~GA~~ll~~~Q~~sg~DL~~llvevy~~~~~~~~~~~~~rL~~L 103 (336)
T 3lpz_A 35 AQETRLVAARYSKQGNWAAAVDIL-----------ASVSQTLLRSGQGGSGGDLAVLLVDTFRQAGQRVDGASRGKLLGC 103 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHH-----------HHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCCCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcCHHHHHHHH-----------HHHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHHH
Confidence 345566677788889999998876 23345567778876665554 556667889998888777776
Q ss_pred hhhhcccchhhHHHHHHHHH----HhC--CCCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCC
Q 047767 425 LSVSASANLGSCRLLHCCAI----KSG--FESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGM 498 (666)
Q Consensus 425 ~~~~~~~~~~~a~~~~~~~~----~~~--~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~ 498 (666)
+........++ ..+...++ +.| ..-++..-..+...|.+.+++.+|+..|---.++.+..|..++.-+...+.
T Consensus 104 ~~~~~~~~p~r-~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~Ae~H~ilg~~~s~~~~a~mL~ew~~~~~ 182 (336)
T 3lpz_A 104 LRLFQPGEPVR-KRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEAAEKHLVLGTKESPEVLARMEYEWYKQDE 182 (336)
T ss_dssp HTTSCTTCHHH-HHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHTTSCTTHHHHHHHHHHHHHHTSC
T ss_pred HHhCCCCCcHH-HHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHhcCCchHHHHHHHHHHHHHhcC
Confidence 43333223332 23333332 333 234566667788889999999999888853333444566555544444433
Q ss_pred hhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHH
Q 047767 499 GREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS 546 (666)
Q Consensus 499 ~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 546 (666)
..++ |...-..++. |.-.++...|..+++...+
T Consensus 183 ~~e~--------------dlfiaRaVL~-yL~l~n~~~A~~~~~~f~~ 215 (336)
T 3lpz_A 183 SHTA--------------PLYCARAVLP-YLLVANVRAANTAYRIFTS 215 (336)
T ss_dssp GGGH--------------HHHHHHHHHH-HHHTTCHHHHHHHHHHHHH
T ss_pred CccH--------------HHHHHHHHHH-HHHhCCHHHHHHHHHHHHH
Confidence 2221 2222222332 4445678888887776664
No 254
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=86.92 E-value=25 Score=34.61 Aligned_cols=97 Identities=11% Similarity=0.024 Sum_probs=70.6
Q ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCCH---HHHHHHHHHhcCCCcHHHHHHHHHHhHHhh-CCCCC----c
Q 047767 485 CFTSIMNGYSRNGMGREALDMLEVMIQR--GLIPDK---VTFLCVLAGCNHSGMVKEGQLVFNSMKSVY-GIDAD----R 554 (666)
Q Consensus 485 ~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~p~----~ 554 (666)
....|...+...|++.+|..+++++... |.-+.. ..+...+..|...+++.+|..++.++.... ...+. .
T Consensus 139 l~~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~ 218 (445)
T 4b4t_P 139 VTKDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKL 218 (445)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHH
Confidence 4566888899999999999999998743 222221 246666778899999999999999875421 22222 3
Q ss_pred hHHHHHHHHHHhcCChHHHHHHHHhCC
Q 047767 555 QHYSCMIDMLGRAGILDKAEELLQQTP 581 (666)
Q Consensus 555 ~~~~~l~~~~~~~g~~~~A~~~~~~~~ 581 (666)
..+...+..+...+++.+|-..|.++.
T Consensus 219 ~~~~~~~~~~~~e~~y~~a~~~y~e~~ 245 (445)
T 4b4t_P 219 EYYNLLVKISLHKREYLEVAQYLQEIY 245 (445)
T ss_dssp HHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 556778888889999999988876654
No 255
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=86.39 E-value=7.2 Score=28.33 Aligned_cols=88 Identities=16% Similarity=0.133 Sum_probs=62.8
Q ss_pred CCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHH
Q 047767 123 AGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKM 202 (666)
Q Consensus 123 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m 202 (666)
....++|..+-+.+...+- ...+--.-+..+...|++++|..+.+...-||...|-+|-.. +.|-.+++...+.++
T Consensus 20 ~H~HqEA~tIAdwL~~~~~--~E~v~lIR~sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce~--rlGl~s~le~rL~~l 95 (116)
T 2p58_C 20 NHYHEEANCIAEWLHLKGE--EEAVQLIRLSSLMNRGDYASALQQGNKLAYPDLEPWLALCEY--RLGLGSALESRLNRL 95 (116)
T ss_dssp TTCHHHHHHHHHHHHHTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHHH--HHTCHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHhCCc--HHHHHHHHHHHHHcchhHHHHHHhcCCCCCchHHHHHHHHHH--hcccHHHHHHHHHHH
Confidence 4467788888777776653 333333445567889999999999999999999998877654 677778887777777
Q ss_pred HHcCCCCCHhhHH
Q 047767 203 KAEGVEPNGLSFC 215 (666)
Q Consensus 203 ~~~~~~p~~~t~~ 215 (666)
...| .|....|.
T Consensus 96 a~sg-~p~~q~Fa 107 (116)
T 2p58_C 96 ARSQ-DPRIQTFV 107 (116)
T ss_dssp TTCC-CHHHHHHH
T ss_pred HhCC-CHHHHHHH
Confidence 7665 44444443
No 256
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=86.28 E-value=15 Score=31.28 Aligned_cols=43 Identities=12% Similarity=0.121 Sum_probs=17.9
Q ss_pred hHHHHhHhcCCChhhHHHHhhcCCCCCchhHHHHHHHhhcCCC
Q 047767 48 NRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRH 90 (666)
Q Consensus 48 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~ 90 (666)
...+..+++.|..+....+.+.+..++...-...+.++.+.+.
T Consensus 32 ~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~~L~~~~~ 74 (201)
T 3ltj_A 32 RAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGD 74 (201)
T ss_dssp HHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHhcCChhHHHHHHHHHcCCCHHHHHHHHHHHHhhCC
Confidence 3344444444443333334444444444433344444444443
No 257
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=85.90 E-value=5.2 Score=38.70 Aligned_cols=73 Identities=12% Similarity=0.080 Sum_probs=55.7
Q ss_pred HHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHH----hhCCCCCchHHHH
Q 047767 486 FTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKS----VYGIDADRQHYSC 559 (666)
Q Consensus 486 ~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~~~~p~~~~~~~ 559 (666)
...++..+...|++.+++..++.+.... +-+...+..++.++.+.|+..+|.+.|+.+.+ ..|+.|...+-..
T Consensus 174 ~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l~~l 250 (388)
T 2ff4_A 174 HTAKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTLRAL 250 (388)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHHHHH
Confidence 3446677778899999998888887742 34667888999999999999999988888654 3588888665443
No 258
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=85.78 E-value=16 Score=31.31 Aligned_cols=92 Identities=8% Similarity=-0.030 Sum_probs=38.1
Q ss_pred CchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhc
Q 047767 143 LNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCS 222 (666)
Q Consensus 143 ~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~ 222 (666)
++..+-...+.++.+.|+.+....+.+.+..++...-...+.++.+.|+.+ +...+..+.. .++...-...+.++.
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---d~~~~vr~~a~~aL~ 168 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAVEPLIKALKDEDWFVRIAAAFALGEIGDER-AVEPLIKALK---DEDGWVRQSAADALG 168 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 333444444444444444333333333333444444444444444444432 2233333322 234444444444444
Q ss_pred ccCChHHHHHHHHHHHH
Q 047767 223 IGMLLDEGKQLHSHVIK 239 (666)
Q Consensus 223 ~~~~~~~a~~~~~~~~~ 239 (666)
+.+. ..+...+..+.+
T Consensus 169 ~~~~-~~~~~~L~~~l~ 184 (211)
T 3ltm_A 169 EIGG-ERVRAAMEKLAE 184 (211)
T ss_dssp HHCS-HHHHHHHHHHHH
T ss_pred HhCc-hhHHHHHHHHHh
Confidence 4444 233334444443
No 259
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=85.45 E-value=8.4 Score=34.33 Aligned_cols=117 Identities=13% Similarity=0.022 Sum_probs=63.2
Q ss_pred HHHcCChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCch----HHHHHHHHHHhcC
Q 047767 493 YSRNGMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQ----HYSCMIDMLGRAG 568 (666)
Q Consensus 493 ~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~----~~~~l~~~~~~~g 568 (666)
..+.|+.+++++.+..-++.. +-|...-..+++.+|-.|++++|.+-++.+.+. .|+.. .|..+|++
T Consensus 7 ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l---~p~~~~~a~~yr~lI~a----- 77 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL---FPEYLPGASQLRHLVKA----- 77 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH---CGGGHHHHHHHHHHHHH-----
T ss_pred HHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh---CchhhHHHHHHHHHHHH-----
Confidence 455677777777776666632 334445566667777777777777777777654 55522 23333322
Q ss_pred ChHHHH-HHHHhCCCCC----CHHHHH-HHHHHH--HhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 569 ILDKAE-ELLQQTPGGG----DCMMWS-SLLRSC--RVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 569 ~~~~A~-~~~~~~~~~~----~~~~~~-~l~~~~--~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
+... ++|..-. .| ....|. .++.+. ...|+.++|.++-+++.+.-|..+.
T Consensus 78 --E~~R~~vfaG~~-~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ap~~~G 135 (273)
T 1zbp_A 78 --AQARKDFAQGAA-TAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEELRQEKGF 135 (273)
T ss_dssp --HHHHHHHTTSCC-CEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCCCCCE
T ss_pred --HHHHHHHHcCCC-CCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhcCcccCC
Confidence 1111 1222111 11 222233 333332 3457777777777777777666543
No 260
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=85.42 E-value=3.7 Score=29.96 Aligned_cols=60 Identities=13% Similarity=0.269 Sum_probs=43.2
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHH
Q 047767 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 562 (666)
+..+-++.+....+.|+.....+.+.+|.+.+++..|.++++.++.+- .+...+|..+++
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~--~~~~~iY~~~lq 87 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVIQ 87 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh--cCchhhHHHHHH
Confidence 455556666666778888888888888888888888888888887762 333556766654
No 261
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=84.71 E-value=24 Score=32.47 Aligned_cols=173 Identities=5% Similarity=0.007 Sum_probs=99.9
Q ss_pred chhHHhHHHHHHHhcCChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHHHH----HHHHHHcCCCCCHHHHHHHhc
Q 047767 348 SVHVQSALTDMYGKCNVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAVEM----FGFMVDEGIGLDEVTLSTTLK 423 (666)
Q Consensus 348 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~----~~~m~~~~~~p~~~~~~~ll~ 423 (666)
-...+.++..=|.+.+++++|.+++. .-...+.+.|+...|-++ ++...+.+++++..+...++.
T Consensus 32 AhQ~~Rtl~~Ry~~~~~~~eAidlL~-----------~ga~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl~~ 100 (312)
T 2wpv_A 32 AHQTLRTIANRYVRSKSYEHAIELIS-----------QGALSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARLVR 100 (312)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHH-----------HHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhcCHHHHHHHHH-----------HHHHHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHHHH
Confidence 33455666777888888888888762 334556777887766654 555566788999888777776
Q ss_pred hhhhhcccchhhHHHHHHHHH----HhCC--CCchHHHHHHHHHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHc-
Q 047767 424 ALSVSASANLGSCRLLHCCAI----KSGF--ESNIAVSCSLMDAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRN- 496 (666)
Q Consensus 424 ~~~~~~~~~~~~a~~~~~~~~----~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~- 496 (666)
.+........ .-..+...++ +.|- .-++.....+...|.+.|++.+|+..|---...+...+..++.-+...
T Consensus 101 l~~~~p~~~~-~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i~~~~~s~~~~a~~l~~w~~~~ 179 (312)
T 2wpv_A 101 LIAELDPSEP-NLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFMLGTHDSMIKYVDLLWDWLCQV 179 (312)
T ss_dssp HHTTCCTTCT-THHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHHTSCHHHHHHHHHHHHHHHHHT
T ss_pred HHHHCCCCCc-hHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHHhCCCccHHHHHHHHHHHHHhc
Confidence 6322111222 2233334343 2222 235667777888888888988888877532222344444444333333
Q ss_pred --CChhHHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHh
Q 047767 497 --GMGREALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSV 547 (666)
Q Consensus 497 --~~~~~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 547 (666)
|...++-- ..-..++ -|.-.|+...|..+++...+.
T Consensus 180 ~~~~~~e~dl--------------f~~RaVL-~yL~l~n~~~A~~~~~~f~~~ 217 (312)
T 2wpv_A 180 DDIEDSTVAE--------------FFSRLVF-NYLFISNISFAHESKDIFLER 217 (312)
T ss_dssp TCCCHHHHHH--------------HHHHHHH-HHHHTTBHHHHHHHHHHHHHH
T ss_pred CCCCcchHHH--------------HHHHHHH-HHHHhcCHHHHHHHHHHHHHH
Confidence 32222111 1112222 244567888888888877654
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.26 E-value=2.2 Score=37.97 Aligned_cols=58 Identities=21% Similarity=0.125 Sum_probs=44.0
Q ss_pred HHHHhcCChHHHHHHHH-hCCCCC-CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCC
Q 047767 562 DMLGRAGILDKAEELLQ-QTPGGG-DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVD 619 (666)
Q Consensus 562 ~~~~~~g~~~~A~~~~~-~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~ 619 (666)
..+.+.|.+++|++.+. .++.+| |...-..++..++-.|++++|.+-++...+++|..
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l~p~~ 64 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKASPKDASLRSSFIELLCIDGDFERADEQLMQSIKLFPEY 64 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTCTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCGGG
T ss_pred HHHHhCCCHHHHHHHHHHHHHhCCcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhCchh
Confidence 34567888888887765 455566 67777778888888888888888888888888864
No 263
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=83.42 E-value=33 Score=32.93 Aligned_cols=23 Identities=9% Similarity=0.098 Sum_probs=14.2
Q ss_pred HHHHHHHhhCCHHHHHHHhccCC
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIP 479 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~ 479 (666)
.|...|.+.|+.++..+++....
T Consensus 24 ~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 24 QQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHH
Confidence 45566666666666666665554
No 264
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=82.97 E-value=4.9 Score=29.35 Aligned_cols=48 Identities=13% Similarity=0.030 Sum_probs=36.5
Q ss_pred hHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHh
Q 047767 193 DEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKL 240 (666)
Q Consensus 193 ~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~ 240 (666)
-+..+-++.+....+.|++......+++|.+.+++..|..+++.+..+
T Consensus 27 ~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K 74 (109)
T 1v54_E 27 WELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK 74 (109)
T ss_dssp HHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHH
Confidence 345556666666677888888888888888888888888888887765
No 265
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=82.57 E-value=4 Score=43.04 Aligned_cols=52 Identities=17% Similarity=0.101 Sum_probs=36.8
Q ss_pred HHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHh
Q 047767 491 NGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSM 544 (666)
Q Consensus 491 ~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~ 544 (666)
+-+...|+++-|+++-++... ..|+.+ +|..|..+|...|+++.|+-.+..+
T Consensus 345 ~FLl~K~~~elAL~~Ak~AV~--~aPseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 345 NFLLNRGDYELALGVSNTSTE--LALDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH--HCSSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHhccCcHHHHHHHHHHHHh--cCchhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334556777777777777776 566554 7777777777777777777777766
No 266
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=80.83 E-value=38 Score=38.23 Aligned_cols=159 Identities=11% Similarity=0.035 Sum_probs=74.8
Q ss_pred HHHHhHhcCCChhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCChHH
Q 047767 49 RTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFYTE 128 (666)
Q Consensus 49 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~ 128 (666)
.++..+.+.+..+.|.++....+..... .-.+..++...|++++|.++|++.-. |+..+......+ ..
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~~~~~~~-~yl~g~~~L~~ge~~~A~~~F~kaa~-~~~~~~~l~~~~----------~~ 884 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWLNSDPIA-VYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAVL----------RE 884 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHSCCCHHH-HHHHHHHHHHTTCHHHHHHHHHTCCC-SCTTCCCSCSSH----------HH
T ss_pred HHHHHHHHhhhHHHHHHHhhhccCCcHH-HHHHHHHHHhcCCHHHHHHHHHHHhh-hhcccchhhhhh----------cc
Confidence 4555566667777776666555543332 23445566777888888887766421 221111100000 00
Q ss_pred HHHHHHHHHHhcC--CCchhhhhHHHHHhHhcCChhHHHHhhccC----CCCC----cccHHHHHHHHHhcCCchHHHHH
Q 047767 129 GIQIHCRVLSLGF--GLNLYIGSPLVDLYMRMGPSVRALDLFDEL----PERN----LATWNLMLRAFCELSRPDEVLRM 198 (666)
Q Consensus 129 a~~~~~~~~~~~~--~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~----~~~~----~~~~~~li~~~~~~~~~~~a~~~ 198 (666)
+..+..... ..-..-|..++..+-+.+.++.+.++-... ...+ ...|..+...+...|++++|...
T Consensus 885 ----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~a 960 (1139)
T 4fhn_B 885 ----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVA 960 (1139)
T ss_dssp ----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHH
T ss_pred ----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHH
Confidence 000010000 011123455555555555555544433221 1111 11466677777777777777777
Q ss_pred HHHHHHcCCCCCHhhHHHHHHHhcccC
Q 047767 199 YNKMKAEGVEPNGLSFCYMVRGCSIGM 225 (666)
Q Consensus 199 ~~~m~~~~~~p~~~t~~~ll~~~~~~~ 225 (666)
+-.+.....+ ......++..++..+
T Consensus 961 L~~~pd~~~r--~~cLr~LV~~lce~~ 985 (1139)
T 4fhn_B 961 LMVLSTTPLK--KSCLLDFVNQLTKQG 985 (1139)
T ss_dssp HHHHHHSSSC--HHHHHHHHHHHHHHC
T ss_pred HHhCCCHHHH--HHHHHHHHHHHHhCC
Confidence 7666554322 233444444444333
No 267
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=78.08 E-value=8.5 Score=29.86 Aligned_cols=60 Identities=13% Similarity=0.277 Sum_probs=44.4
Q ss_pred HHHHHHHHHHHcCCCCCHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHH
Q 047767 501 EALDMLEVMIQRGLIPDKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMID 562 (666)
Q Consensus 501 ~a~~~~~~m~~~g~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~ 562 (666)
+..+-++.+....+.|+.......+.+|.+.+++..|..+++-++.+ ..+...+|..+++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K--~~~~~~iY~y~lq 130 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDK--AGPHKEIYPYVIQ 130 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--TTTCTTHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHh--cCCchhhHHHHHH
Confidence 34455566666678888888888888888888888888888888876 3344566776664
No 268
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=77.83 E-value=25 Score=31.57 Aligned_cols=20 Identities=10% Similarity=0.179 Sum_probs=11.2
Q ss_pred HHHhHhcCCChhhHHHHhhc
Q 047767 50 TIDDFVKSGHLNSAKKLFDE 69 (666)
Q Consensus 50 l~~~~~~~g~~~~A~~~~~~ 69 (666)
.+...++.|+.+-+..+++.
T Consensus 42 ~L~~A~~~g~~~~v~~Ll~~ 61 (285)
T 1wdy_A 42 PLHNAVQMSREDIVELLLRH 61 (285)
T ss_dssp HHHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHHcCCHHHHHHHHHc
Confidence 34444556666666655554
No 269
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=77.34 E-value=38 Score=38.22 Aligned_cols=83 Identities=12% Similarity=0.013 Sum_probs=44.4
Q ss_pred HHHHHHHHHHhcCChHHHHHHHHhCC----CC-CC--HHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHH
Q 047767 556 HYSCMIDMLGRAGILDKAEELLQQTP----GG-GD--CMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSN 628 (666)
Q Consensus 556 ~~~~l~~~~~~~g~~~~A~~~~~~~~----~~-~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~ 628 (666)
-|..++..+.+.|.++.++++-+... .. ++ ...|..+...+...|++++|-..+-.+-...- .......|+.
T Consensus 901 YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~ye~Ay~aL~~~pd~~~-r~~cLr~LV~ 979 (1139)
T 4fhn_B 901 YYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKFDAAHVALMVLSTTPL-KKSCLLDFVN 979 (1139)
T ss_dssp HHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCSGGGGHHHHHHHHSSS-CHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCHHHHHHHHHhCCCHHH-HHHHHHHHHH
Confidence 35556666666666666665544221 11 11 12456666666666777776666654433221 2345566666
Q ss_pred HHhhcCCchHH
Q 047767 629 FYSEIGEFEVS 639 (666)
Q Consensus 629 ~~~~~g~~~~A 639 (666)
.++..|..++-
T Consensus 980 ~lce~~~~~~L 990 (1139)
T 4fhn_B 980 QLTKQGKINQL 990 (1139)
T ss_dssp HHHHHCCHHHH
T ss_pred HHHhCCChhhh
Confidence 66666654443
No 270
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=76.77 E-value=23 Score=29.90 Aligned_cols=46 Identities=7% Similarity=0.033 Sum_probs=24.5
Q ss_pred hHHHHHHHHhCC----CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhc
Q 047767 570 LDKAEELLQQTP----GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615 (666)
Q Consensus 570 ~~~A~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 615 (666)
..++.++|.-|. ...-...|......+...|++.+|.++|+..++.
T Consensus 95 ~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~ 144 (202)
T 3esl_A 95 FHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN 144 (202)
T ss_dssp HHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 445555554443 2224455555555555666666666666666553
No 271
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=76.19 E-value=12 Score=36.65 Aligned_cols=93 Identities=11% Similarity=0.097 Sum_probs=55.4
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCC-----CCCCHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC--CCCcchH---
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTP-----GGGDCMMWSSLLRSCRVHGNEIIGRRVANILMELE--PVDFAVY--- 623 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--p~~~~~~--- 623 (666)
..++..+++.|.+.|++++|.+.+.++. ...-...+..+++.+...+|+..+...++++.... ..++...
T Consensus 131 ~~~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~l 210 (429)
T 4b4t_R 131 AQAWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRY 210 (429)
T ss_dssp SSCCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHH
Confidence 3455667777777777777777776654 11134566666677777777777777777765522 1122221
Q ss_pred -HHHHHHHhhcCCchHHHHHHHHH
Q 047767 624 -SQVSNFYSEIGEFEVSMQIRETA 646 (666)
Q Consensus 624 -~~l~~~~~~~g~~~~A~~~~~~~ 646 (666)
..-|..+...+++.+|.+.|-..
T Consensus 211 k~~~gl~~l~~r~f~~Aa~~f~e~ 234 (429)
T 4b4t_R 211 KTYYGIHCLAVRNFKEAAKLLVDS 234 (429)
T ss_dssp HHHHHHGGGGTSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhChHHHHHHHHHHH
Confidence 22344555667777777776554
No 272
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=74.78 E-value=42 Score=30.02 Aligned_cols=117 Identities=11% Similarity=0.033 Sum_probs=61.4
Q ss_pred HHHHhHhcCCChhhHHHHhhcCCCCCch---hHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCccc--HHHHHHHHHcC
Q 047767 49 RTIDDFVKSGHLNSAKKLFDEMPARDMV---TYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST--FSSVLSVCSNA 123 (666)
Q Consensus 49 ~l~~~~~~~g~~~~A~~~~~~~~~~~~~---~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~ 123 (666)
..+...++.|+++.+..+++.-...+.. .-.+.+...+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 82 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLLEGGANVNFQEEEGGWTPLHNAVQMSRED----IVELLLRHGADPVLRKKNGATPFLLAAIA 82 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHHHTTCCTTCCCTTTCCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTCCCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHHHcCCCcccccCCCCCcHHHHHHHcCCHH----HHHHHHHcCCCCcccCCCCCCHHHHHHHc
Confidence 4555667888888888888765433221 1112344444566654 4455555665554321 11233444455
Q ss_pred CChHHHHHHHHHHHHhcCCCchhh--hhHHHHHhHhcCChhHHHHhhccCCC
Q 047767 124 GFYTEGIQIHCRVLSLGFGLNLYI--GSPLVDLYMRMGPSVRALDLFDELPE 173 (666)
Q Consensus 124 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~~~ 173 (666)
|+.+- ++.+.+.|..++... -.+.+...+..|+.+-+..+++.-..
T Consensus 83 ~~~~~----v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g~~ 130 (285)
T 1wdy_A 83 GSVKL----LKLFLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGAN 130 (285)
T ss_dssp TCHHH----HHHHHHTTCCTTCBCTTCCBHHHHHHHTTCHHHHHHHHHTTCC
T ss_pred CCHHH----HHHHHHcCCCCCccCcccCCHHHHHHHhCCHHHHHHHHHhCCC
Confidence 66544 444455665544321 12334445667777777777665444
No 273
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=74.44 E-value=11 Score=29.27 Aligned_cols=59 Identities=10% Similarity=0.036 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHcCCCCCHhhHHHHHHHhcccCChHHHHHHHHHHHHhCCCCchHHHHHHHH
Q 047767 194 EVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGMLLDEGKQLHSHVIKLGWVDVNIFVANALV 254 (666)
Q Consensus 194 ~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 254 (666)
+..+-++.+....+.|++......+++|.+.+|+..|..+++-+..+- .+...+|..++
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~K~--~~~~~iY~y~l 129 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA--GPHKEIYPYVI 129 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TTCTTHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--CCchhhHHHHH
Confidence 345556666666788888888888888888888888888888877663 33333444443
No 274
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=74.11 E-value=40 Score=28.66 Aligned_cols=154 Identities=12% Similarity=0.053 Sum_probs=72.8
Q ss_pred CchhhhhHHHHhHhcCCChhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHH
Q 047767 42 LNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCS 121 (666)
Q Consensus 42 ~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~ 121 (666)
++...-...+..+++.|..+....+.+.+..++...-...+.++.+.++.+ +...+..+.. .++...-...+.++.
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~~~~~L~~~l~~~~~~vr~~a~~aL~~~~~~~-~~~~L~~~l~---~~~~~vr~~a~~aL~ 106 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDERAVEPLIKALKDEDAWVRRAAADALGQIGDER-AVEPLIKALK---DEDGWVRQSAAVALG 106 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSCHHHHHHHHHHHHHHCCGG-GHHHHHHHTT---CSSHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCCccHHHHHHHHHcCCCHHHHHHHHHHHHhhCCHH-HHHHHHHHHc---CCCHHHHHHHHHHHH
Confidence 344445555556666665544455555555555555555555555555432 2333333332 244445555555555
Q ss_pred cCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChhHHHHhhccCCCCCcccHHHHHHHHHhcCCchHHHHHHHH
Q 047767 122 NAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSVRALDLFDELPERNLATWNLMLRAFCELSRPDEVLRMYNK 201 (666)
Q Consensus 122 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~ 201 (666)
..++.+....+.+ +. -.++..+....+.++.+.|+.+....+.+.+..++...-...+.++.+.+. ..+...+..
T Consensus 107 ~~~~~~~~~~L~~-~l---~d~~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~a~~aL~~~~~-~~~~~~L~~ 181 (211)
T 3ltm_A 107 QIGDERAVEPLIK-AL---KDEDWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIGG-ERVRAAMEK 181 (211)
T ss_dssp HHCCGGGHHHHHH-HT---TCSSHHHHHHHHHHHHHHCCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHCS-HHHHHHHHH
T ss_pred HhCcHHHHHHHHH-HH---hCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhCc-hhHHHHHHH
Confidence 5555433222222 22 134555555555555555554433334444444554444444555555544 334444444
Q ss_pred HHH
Q 047767 202 MKA 204 (666)
Q Consensus 202 m~~ 204 (666)
+.+
T Consensus 182 ~l~ 184 (211)
T 3ltm_A 182 LAE 184 (211)
T ss_dssp HHH
T ss_pred HHh
Confidence 433
No 275
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=73.22 E-value=9.8 Score=37.35 Aligned_cols=95 Identities=13% Similarity=0.023 Sum_probs=68.0
Q ss_pred HHHHHHHHHHhhCCHHHHHHHhccCCC------CCHHHHHHHHHHHHHcCChhHHHHHHHHHHH---cCCCCCHHH--HH
Q 047767 454 VSCSLMDAYSRCGHIELSHQVFEKIPS------PNVVCFTSIMNGYSRNGMGREALDMLEVMIQ---RGLIPDKVT--FL 522 (666)
Q Consensus 454 ~~~~l~~~~~~~g~~~~A~~~~~~~~~------~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~---~g~~p~~~~--~~ 522 (666)
+...+...|.+.|+++.|.+.|.++.. .-+..+-..++.+...+++..+...+++... .+-.|+... ..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~~~~~~d~~~~~~lk~ 212 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSMIEKGGDWERRNRYKT 212 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTCCCTHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhhhcCCCHHHHHHHHH
Confidence 455688889999999999999988763 3356777788888889999999998888764 233343321 11
Q ss_pred HHHHHhcCCCcHHHHHHHHHHhHHhh
Q 047767 523 CVLAGCNHSGMVKEGQLVFNSMKSVY 548 (666)
Q Consensus 523 ~l~~~~~~~g~~~~a~~~~~~~~~~~ 548 (666)
.-...+...+++..|.+.|-+....+
T Consensus 213 ~~gl~~l~~r~f~~Aa~~f~e~~~t~ 238 (429)
T 4b4t_R 213 YYGIHCLAVRNFKEAAKLLVDSLATF 238 (429)
T ss_dssp HHHHGGGGTSCHHHHHHHHHHHHHHS
T ss_pred HHHHHHHHhChHHHHHHHHHHHhccC
Confidence 12223556788999999998887763
No 276
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=69.60 E-value=30 Score=25.20 Aligned_cols=60 Identities=13% Similarity=0.119 Sum_probs=46.6
Q ss_pred HHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 047767 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522 (666)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 522 (666)
..+.+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++..+| .|....|.
T Consensus 47 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 106 (115)
T 2uwj_G 47 SSLANQGRYQEALAFAHGNPWPALEPWFALCE--WHLGLGAALDRRLAGLGGSS-DPALADFA 106 (115)
T ss_dssp HHHHHTTCHHHHHGGGTTCCCGGGHHHHHHHH--HHTTCHHHHHHHHHHHHTCS-SHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45678899999999999999999999987754 46788888887777887776 55544554
No 277
>3bqo_A Telomeric repeat-binding factor 1; TRF1 TRFH domain dimerization domain TIN2, ADP-ribosylation, alternative splicing, cell cycle, cell division; 2.00A {Homo sapiens} SCOP: a.146.1.1 PDB: 3l82_A 1h6o_A
Probab=69.13 E-value=20 Score=29.90 Aligned_cols=72 Identities=14% Similarity=0.084 Sum_probs=43.2
Q ss_pred HHHHHHHHhCCCCCCHH-------HHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHH
Q 047767 571 DKAEELLQQTPGGGDCM-------MWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQI 642 (666)
Q Consensus 571 ~~A~~~~~~~~~~~~~~-------~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~ 642 (666)
+.|+.+++.+...-+.. .-......|.+.|.+++|.+++++.....|.+...-..|..+-.+...+..-++.
T Consensus 95 ESAl~v~~~I~~e~~~lheei~~Llk~qAV~VCiekg~Fk~A~eiLkr~f~~~~~~~~lr~kL~~II~~Kd~~H~~lqn 173 (211)
T 3bqo_A 95 ESALMIWGSIEKEHDKLHEEIQNLIKIQAIAVCMENGNFKEAEEVFERIFGDPNSHMPFKSKLLMIISQKDTFHSFFQH 173 (211)
T ss_dssp HHHHHHHTTSCSCCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHC-----CCTTHHHHHHHHHTTCTTCHHHHH
T ss_pred HHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcCCCCchHHHHHHHHHHHccCCCcHHHHH
Confidence 55666666665222210 1112334588888888888888888887777766777777777777766666655
No 278
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=68.39 E-value=32 Score=25.09 Aligned_cols=60 Identities=18% Similarity=0.238 Sum_probs=45.3
Q ss_pred HHHHhhCCHHHHHHHhccCCCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHHHHH
Q 047767 460 DAYSRCGHIELSHQVFEKIPSPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKVTFL 522 (666)
Q Consensus 460 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~~~~ 522 (666)
..+.+.|++++|..+.+....||...|-+|-. .+.|-.+++..-+.++..+| .|....|.
T Consensus 48 sSLmNrG~Yq~Al~l~~~~c~pdlepw~ALce--~rlGl~s~le~rL~~la~sg-~p~~q~Fa 107 (116)
T 2p58_C 48 SSLMNRGDYASALQQGNKLAYPDLEPWLALCE--YRLGLGSALESRLNRLARSQ-DPRIQTFV 107 (116)
T ss_dssp HHHHHTTCHHHHHHHHTTSCCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTCC-CHHHHHHH
T ss_pred HHHHcchhHHHHHHhcCCCCCchHHHHHHHHH--HhcccHHHHHHHHHHHHhCC-CHHHHHHH
Confidence 45678899999999999999999999987754 36677777777777777665 45444443
No 279
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=66.77 E-value=92 Score=29.83 Aligned_cols=91 Identities=9% Similarity=-0.142 Sum_probs=51.2
Q ss_pred HHHHHHHhhCCHHHHHHHhccCCC----CC-----HHHHHHHHHHHHHcCChhHHHHHHHHHHHc--CCCCCHHHHHH--
Q 047767 457 SLMDAYSRCGHIELSHQVFEKIPS----PN-----VVCFTSIMNGYSRNGMGREALDMLEVMIQR--GLIPDKVTFLC-- 523 (666)
Q Consensus 457 ~l~~~~~~~g~~~~A~~~~~~~~~----~~-----~~~~~~li~~~~~~~~~~~a~~~~~~m~~~--g~~p~~~~~~~-- 523 (666)
.++..|...|++.+|.+.+.++.+ .| +..+-.-++.|...+++.++...+...... .+.|++..-..
T Consensus 104 kL~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~ 183 (394)
T 3txn_A 104 RLIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALD 183 (394)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHH
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHH
Confidence 456677777777777666665542 11 223444556677777777777777666532 23233332111
Q ss_pred --HHHHhc-CCCcHHHHHHHHHHhHHh
Q 047767 524 --VLAGCN-HSGMVKEGQLVFNSMKSV 547 (666)
Q Consensus 524 --l~~~~~-~~g~~~~a~~~~~~~~~~ 547 (666)
-...+. ..+++..|...|-+..+.
T Consensus 184 ~~~Gi~~l~~~rdyk~A~~~F~eaf~~ 210 (394)
T 3txn_A 184 LQSGILHAADERDFKTAFSYFYEAFEG 210 (394)
T ss_dssp HHHHHHHHHTTSCHHHHHHHHHHHHHH
T ss_pred HHhhHHHHHhccCHHHHHHHHHHHHhc
Confidence 112244 677777777776666543
No 280
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=65.69 E-value=50 Score=26.48 Aligned_cols=49 Identities=8% Similarity=0.173 Sum_probs=28.0
Q ss_pred HHHHHHHHHh--cCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhCCCCc
Q 047767 605 GRRVANILME--LEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALARKLTR 653 (666)
Q Consensus 605 a~~~~~~~~~--~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~ 653 (666)
+.++|+.+.. +.-.-+..|...+..+...|++.+|.++|+.-.+++-+|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 5555555554 234445556666666666666666666666555554443
No 281
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=61.54 E-value=58 Score=26.50 Aligned_cols=31 Identities=6% Similarity=-0.082 Sum_probs=16.6
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhc
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMEL 615 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 615 (666)
-...|......+-..|++.+|.++|+..++.
T Consensus 95 ~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~ 125 (164)
T 2wvi_A 95 LAQFYISWAEEYEARENFRKADAIFQEGIQQ 125 (164)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 3444544555555555555555555555553
No 282
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=60.39 E-value=67 Score=27.15 Aligned_cols=56 Identities=7% Similarity=0.011 Sum_probs=37.0
Q ss_pred CChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC
Q 047767 497 GMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553 (666)
Q Consensus 497 ~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 553 (666)
+...++..+|..|...|+--... -|......+...|++.+|.++|+.-.+. +-+|-
T Consensus 93 ~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~-~A~P~ 149 (202)
T 3esl_A 93 NNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAEN-NCRPY 149 (202)
T ss_dssp TCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCBSH
T ss_pred cccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 33557777777777776655433 4666666666777777777777777665 55553
No 283
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=57.32 E-value=73 Score=26.54 Aligned_cols=150 Identities=9% Similarity=0.001 Sum_probs=69.2
Q ss_pred hHhcCCChhhHHHHhhcCC-C---CCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCccc--HHHHHHHHHcCCCh
Q 047767 53 DFVKSGHLNSAKKLFDEMP-A---RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST--FSSVLSVCSNAGFY 126 (666)
Q Consensus 53 ~~~~~g~~~~A~~~~~~~~-~---~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~~~~ 126 (666)
..+..|+.+.+..+++.-. . ++..-++.|. ..++.|+. ++++.+.+.|..++... -.+.+...+..|+.
T Consensus 11 ~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~ 85 (201)
T 3hra_A 11 EAANQRDTKKVKEILQDTTYQVDEVDTEGNTPLN-IAVHNNDI----EIAKALIDRGADINLQNSISDSPYLYAGAQGRT 85 (201)
T ss_dssp HHHHTTCHHHHHHHHTCTTCCTTCCCTTSCCHHH-HHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCH
T ss_pred HHHHhccHHHHHHHHHcCCCCCCCCCCCCCCHHH-HHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCH
Confidence 3456777777777776554 2 2222223333 23344553 34444455555544322 11233344455666
Q ss_pred HHHHHHHHHHHHhcCCCchh--hhhHHHHHhHhcCChhHHHHhhccC-CC---CCcccHHHHHHHHHhcCCchHHHHHHH
Q 047767 127 TEGIQIHCRVLSLGFGLNLY--IGSPLVDLYMRMGPSVRALDLFDEL-PE---RNLATWNLMLRAFCELSRPDEVLRMYN 200 (666)
Q Consensus 127 ~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~~~~~~-~~---~~~~~~~~li~~~~~~~~~~~a~~~~~ 200 (666)
+-+..+++. .+..++.. .-.+.+...++.|+.+-+..+++.- .. ++..-++.|..+.........-.++.+
T Consensus 86 ~~~~~Ll~~---~~~~~~~~~~~g~t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~~g~t~L~~A~~~~~~~~~~~~~v~ 162 (201)
T 3hra_A 86 EILAYMLKH---ATPDLNKHNRYGGNALIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVK 162 (201)
T ss_dssp HHHHHHHHH---SCCCTTCCCTTSCCSHHHHHHTTCHHHHHHHHHHCCCCTTCCCTTSCCHHHHHHHSSCCSHHHHHHHH
T ss_pred HHHHHHHhc---cCcccccccCCCCcHHHHHHHcCCHHHHHHHHHcCCCCcCCCCCCCCCHHHHHHHhccchhhHHHHHH
Confidence 554444422 22222211 1112334445667776666666554 22 333334444444333222333355666
Q ss_pred HHHHcCCCCC
Q 047767 201 KMKAEGVEPN 210 (666)
Q Consensus 201 ~m~~~~~~p~ 210 (666)
.+.+.|..|+
T Consensus 163 ~Ll~~ga~~~ 172 (201)
T 3hra_A 163 LLMENGADQS 172 (201)
T ss_dssp HHHHTTCCTT
T ss_pred HHHHCCCCCC
Confidence 6666666554
No 284
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=57.07 E-value=1.1e+02 Score=28.02 Aligned_cols=59 Identities=10% Similarity=0.008 Sum_probs=42.3
Q ss_pred HHhCCCCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 577 LQQTPGGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 577 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
|-.....| -..++...+....+.+|+..|-.+.++++++.|+.. ..++|.++...-.+.
T Consensus 196 FT~c~LQp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~~--------------~a~qArkil~~ce~~ 256 (325)
T 3mv2_A 196 FTKAKLSPIHRTNALQVAMSQHFKHKNFLQASYFAGEFLKIISSGP--------------RAEQARKIKNKADSM 256 (325)
T ss_dssp GGGSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCCSSH--------------HHHHHHHHHHHHHTS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCHH--------------HHHHHHHHHHHHhcC
Confidence 44444555 345677777788999999999999999999998522 346677776655433
No 285
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=54.11 E-value=34 Score=34.02 Aligned_cols=24 Identities=13% Similarity=0.164 Sum_probs=12.0
Q ss_pred HHHHHHHhcCCCcHHHHHHHHHHh
Q 047767 521 FLCVLAGCNHSGMVKEGQLVFNSM 544 (666)
Q Consensus 521 ~~~l~~~~~~~g~~~~a~~~~~~~ 544 (666)
++.+++.|...+.++.|..+..+.
T Consensus 234 ~nllLRnYL~~~~y~qA~~lvsk~ 257 (523)
T 4b4t_S 234 INLILRDFLNNGEVDSASDFISKL 257 (523)
T ss_dssp HHHHHHHHHHSSCSTTHHHHHHHH
T ss_pred HHHHHHHHHccCcHHHHHHHHhcC
Confidence 444444555555555555555444
No 286
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=52.75 E-value=99 Score=26.63 Aligned_cols=17 Identities=12% Similarity=-0.070 Sum_probs=7.9
Q ss_pred HhHhcCCChhhHHHHhh
Q 047767 52 DDFVKSGHLNSAKKLFD 68 (666)
Q Consensus 52 ~~~~~~g~~~~A~~~~~ 68 (666)
...+..|+.+-+..+++
T Consensus 51 ~~A~~~~~~~~v~~Ll~ 67 (241)
T 1k1a_A 51 HLAVITTLPSVVRLLVT 67 (241)
T ss_dssp HHHHHTTCHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHH
Confidence 33344555554444444
No 287
>1ya0_A SMG-7 transcript variant 2; alpha-helical repeat, tetratricopetide repeat (TPR), 14-3-3, signaling protein; 2.55A {Homo sapiens} SCOP: a.118.8.1
Probab=52.30 E-value=38 Score=33.78 Aligned_cols=53 Identities=15% Similarity=0.080 Sum_probs=33.3
Q ss_pred HHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHH
Q 047767 592 LLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRE 644 (666)
Q Consensus 592 l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~ 644 (666)
|+...+-....+.|...|+++..+.|.+...|+.||.+....|+.-+|.-.|-
T Consensus 158 LGDL~RY~~~~~~A~~~Y~~A~~~~P~~G~~~nqLavla~~~~~~l~a~y~y~ 210 (497)
T 1ya0_A 158 LGDIARYRNQTSQAESYYRHAAQLVPSNGQPYNQLAILASSKGDHLTTIFYYC 210 (497)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHCTTBSHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHHHhCCCCCchHHHHHHHHhcccccHHHHHHHH
Confidence 33344444556667777777777777777777777777766666666655443
No 288
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=48.20 E-value=39 Score=33.57 Aligned_cols=68 Identities=7% Similarity=0.001 Sum_probs=50.5
Q ss_pred chHHHHHHHHHHhcCChHHHHHHHHhCCCCCC------HHHHH-HHHHHHHhhCChHHHHHHHHHHHhcCCCCcc
Q 047767 554 RQHYSCMIDMLGRAGILDKAEELLQQTPGGGD------CMMWS-SLLRSCRVHGNEIIGRRVANILMELEPVDFA 621 (666)
Q Consensus 554 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~------~~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~ 621 (666)
...++.+++.|...+.++.|..++.+...+.. ...|. .+++.+...+++.+|.+.+..++...|.+..
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rkap~~~~ 305 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRKAPHNSK 305 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSSCSCSSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCcchh
Confidence 56788888999999999999999988763321 11222 2445567788999999999999998887643
No 289
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=45.50 E-value=42 Score=29.02 Aligned_cols=212 Identities=9% Similarity=-0.064 Sum_probs=103.8
Q ss_pred HhHHhhhccCCCccchhhhhhcccCCCCCchhhhhHHHHhHhcCCChhhHHHHhhcCCCCCchh---HHHHHHHhhcCCC
Q 047767 14 TTLAPTCTSIVPLSSSLLLDSYCQPNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEMPARDMVT---YNLLISGCGKFRH 90 (666)
Q Consensus 14 ~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~---~~~ll~~~~~~~~ 90 (666)
+.|.. .+..|+++....+.+.-..-..++.. -...+...++.|+++-+..+++.-...+... -...+...+..|+
T Consensus 11 ~~l~~-A~~~g~~~~~~~Ll~~g~~~~~~~~~-g~t~L~~A~~~~~~~~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 11 WDIVK-ATQYGIYERCRELVEAGYDVRQPDKE-NVTLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp CCHHH-HHHTTCHHHHHHHHHTTCCTTCCCTT-SCCHHHHHHHTTCHHHHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred hHHHH-HHHcCChHHHHHHHHcCCCcCCCCCC-CCCHHHHHHHhCCHHHHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 34444 34567777776666643311112222 2345666778899999888888765432111 1123334445566
Q ss_pred hhhHHHHHHHHHhCCCCCCcccH--HHHHHHHHcCCChHHHHHHHHHHHHhcCCCch---hhhhHHHHHhHhcCChhHHH
Q 047767 91 PKQALYLYDEMVSHGIKESASTF--SSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNL---YIGSPLVDLYMRMGPSVRAL 165 (666)
Q Consensus 91 ~~~a~~~~~~m~~~~~~~~~~~~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~ll~~~~~~g~~~~a~ 165 (666)
.+ +++.+.+.|..++.... ...+...+..|+.+- ++.+.+.|..++. .-.+.+..+.. .+......
T Consensus 89 ~~----~v~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~----~~~Ll~~~~~~~~~~~~g~t~l~~a~~-~~~~~~~~ 159 (240)
T 3eu9_A 89 LS----MVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSI----VAYLIAKGQDVDMMDQNGMTPLMWAAY-RTHSVDPT 159 (240)
T ss_dssp HH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHH----HHHHHHTTCCTTCCCTTSCCHHHHHHH-HCCSSTTH
T ss_pred HH----HHHHHHHcCCCCcccCCCCCCHHHHHHHcCHHHH----HHHHHhcCCCccccCCCCCcHHHHHHH-hCChHHHH
Confidence 54 44455556655543221 133445556677654 4445556655433 23344444443 44433333
Q ss_pred Hhh-ccCCCC---CcccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhh--HHHHHHHhcccCChHHHHHHHHHHHH
Q 047767 166 DLF-DELPER---NLATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLS--FCYMVRGCSIGMLLDEGKQLHSHVIK 239 (666)
Q Consensus 166 ~~~-~~~~~~---~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t--~~~ll~~~~~~~~~~~a~~~~~~~~~ 239 (666)
+++ +.-..+ +...-.+.+...+..|+.+-+. .+.+.|..|+... -.+.+......|+.+-++.+++...+
T Consensus 160 ~~L~~~~~~~~~~~~~~g~t~L~~A~~~~~~~~v~----~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~~~~ 235 (240)
T 3eu9_A 160 RLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVIS----LLLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEARQA 235 (240)
T ss_dssp HHHHHTTCCTTCCCTTTCCCHHHHHHHHTCHHHHH----HHHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHHC--
T ss_pred HHHHhcCCCcchhhccCCCcHHHHHHHcCCHHHHH----HHHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHhhhc
Confidence 443 332222 2211223344555667765443 3444565554321 11345555667787777776665544
Q ss_pred h
Q 047767 240 L 240 (666)
Q Consensus 240 ~ 240 (666)
.
T Consensus 236 ~ 236 (240)
T 3eu9_A 236 K 236 (240)
T ss_dssp -
T ss_pred c
Confidence 3
No 290
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=44.97 E-value=1.1e+02 Score=26.23 Aligned_cols=26 Identities=8% Similarity=-0.174 Sum_probs=14.0
Q ss_pred HhhcCCChhhHHHHHHHHHhCCCCCC
Q 047767 84 GCGKFRHPKQALYLYDEMVSHGIKES 109 (666)
Q Consensus 84 ~~~~~~~~~~a~~~~~~m~~~~~~~~ 109 (666)
..++.|+.+.+..+++.+.+.|..++
T Consensus 15 ~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 15 IAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 33455666666666655555554443
No 291
>3ltj_A Alpharep-4; protein engineering, heat-like repeat, protein binding; 1.80A {Synthetic}
Probab=44.73 E-value=1.4e+02 Score=24.93 Aligned_cols=47 Identities=13% Similarity=0.034 Sum_probs=18.7
Q ss_pred hHHHHHHHHHHHHccCChHHHHHHhccCCCCChhhHHHHHHHHHcCC
Q 047767 246 NIFVANALVDFYSACGSLIEAKKSFDFIPVDDVISWNSIVSIYADYD 292 (666)
Q Consensus 246 ~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~li~~~~~~g 292 (666)
+..+-...+.++.+.++.+....+...+..++...-...+.++.+.|
T Consensus 120 ~~~vr~~a~~aL~~~~~~~~~~~L~~~l~d~~~~vr~~A~~aL~~~~ 166 (201)
T 3ltj_A 120 DWFVRIAAAFALGEIGDERAVEPLIKALKDEDGWVRQSAADALGEIG 166 (201)
T ss_dssp SHHHHHHHHHHHHHHTCGGGHHHHHHHTTCSSHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHcCCCHHHHHHHHHHHHHhC
Confidence 34444444444444444333323333333334333333444444443
No 292
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=43.71 E-value=1.2e+02 Score=24.19 Aligned_cols=81 Identities=7% Similarity=0.060 Sum_probs=47.6
Q ss_pred HHHHHHhccCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhH
Q 047767 469 ELSHQVFEKIP--SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMK 545 (666)
Q Consensus 469 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 545 (666)
+.+.+.|.... +.|+.-...-+.- + ...+++..+|..|..+|+--... -|......+...|++.+|.++|+.-.
T Consensus 52 Erc~~~f~~~~~YknD~RyLklWl~y-a--~~~~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi 128 (152)
T 4a1g_A 52 EHLMKEFLDKKKYHNDPRFISYCLKF-A--EYNSDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGI 128 (152)
T ss_dssp HHHHHHHTTCGGGTTCHHHHHHHHHH-H--TTBSCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhcccccccCCHHHHHHHHHH-H--HhcCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555444 2454433322221 1 22344777888888777655443 56666666777788888888887777
Q ss_pred HhhCCCCC
Q 047767 546 SVYGIDAD 553 (666)
Q Consensus 546 ~~~~~~p~ 553 (666)
+. +-+|-
T Consensus 129 ~~-~A~P~ 135 (152)
T 4a1g_A 129 QN-QAEPR 135 (152)
T ss_dssp HT-TCBSH
T ss_pred Hc-CCccH
Confidence 66 55553
No 293
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=43.61 E-value=1.8e+02 Score=26.04 Aligned_cols=15 Identities=0% Similarity=-0.215 Sum_probs=6.9
Q ss_pred HHHHhHhcCCCCChh
Q 047767 300 LFFRMQLCRKRPSIR 314 (666)
Q Consensus 300 ~~~~m~~~~~~p~~~ 314 (666)
+.+.+.+.|..|+..
T Consensus 210 ~v~~Ll~~gad~~~~ 224 (285)
T 3kea_A 210 MLQALFKYDINIYSA 224 (285)
T ss_dssp HHHHHTTSCBCSTTT
T ss_pred HHHHHHHcCCCCCCC
Confidence 334444455555444
No 294
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=42.96 E-value=83 Score=26.16 Aligned_cols=15 Identities=7% Similarity=-0.086 Sum_probs=7.6
Q ss_pred HHHHHHhHhcCCCCC
Q 047767 298 LELFFRMQLCRKRPS 312 (666)
Q Consensus 298 ~~~~~~m~~~~~~p~ 312 (666)
.++++.+.+.|..++
T Consensus 158 ~~~v~~Ll~~ga~~~ 172 (201)
T 3hra_A 158 QDIVKLLMENGADQS 172 (201)
T ss_dssp HHHHHHHHHTTCCTT
T ss_pred HHHHHHHHHCCCCCC
Confidence 445555555555444
No 295
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=40.37 E-value=1.6e+02 Score=32.42 Aligned_cols=27 Identities=7% Similarity=-0.081 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhhCChHHHHHHHHHHHh
Q 047767 588 MWSSLLRSCRVHGNEIIGRRVANILME 614 (666)
Q Consensus 588 ~~~~l~~~~~~~~~~~~a~~~~~~~~~ 614 (666)
.|..++..+-+.+-++.++++.+.+++
T Consensus 899 YY~hV~~LFE~~~a~~~vi~fA~lAI~ 925 (950)
T 4gq2_M 899 YYLHLSKKLFEESAYIDALEFSLLADA 925 (950)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcCCHHHHHHHHHHHHh
Confidence 566666667777777777777777776
No 296
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=38.18 E-value=1.3e+02 Score=28.12 Aligned_cols=14 Identities=7% Similarity=-0.118 Sum_probs=6.9
Q ss_pred HccCChHHHHHHhc
Q 047767 258 SACGSLIEAKKSFD 271 (666)
Q Consensus 258 ~~~~~~~~A~~~~~ 271 (666)
+..|+.+-+..+++
T Consensus 181 ~~~g~~~~v~~Ll~ 194 (364)
T 3ljn_A 181 MEFRNREALDLMMD 194 (364)
T ss_dssp HHTTCHHHHHHHHH
T ss_pred HHcCCHHHHHHHHh
Confidence 34455555555544
No 297
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=37.94 E-value=63 Score=28.28 Aligned_cols=85 Identities=11% Similarity=0.036 Sum_probs=45.1
Q ss_pred HHHHHHcCChhHHHHHHHHHHHc--CCCC----CHHHHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHH
Q 047767 490 MNGYSRNGMGREALDMLEVMIQR--GLIP----DKVTFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDM 563 (666)
Q Consensus 490 i~~~~~~~~~~~a~~~~~~m~~~--g~~p----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~ 563 (666)
+..+....++++|..++++..+. ++++ +.......+..-.....-.-+..+.+.+. -.+++......+..
T Consensus 25 LDv~IA~r~feeAv~lle~~~~~l~~~~~~~~~~~~~~~~~l~~ki~eR~~~L~~~L~~~l~----~~~~~~~~r~~v~~ 100 (235)
T 2d2s_A 25 IDIELARLRFESAVETLLDIESQLEDLSERISDEELMLLNLISLKIEQRREAISSKLSQSIL----SSNEIVHLKSGTEN 100 (235)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHHHHTC-------CHHHHHHHHHHHHHHHHHHHHHHHHHH----TCSSHHHHHHHHHH
T ss_pred HHHHHHHHhHHHHHHHHHHHHHHHHhCcccccccchHHHHHHHHHHHHHHHHHHHHHHHHHH----hcCCHHHHHHHHHH
Confidence 55667777888888777766531 2222 11111222222222222222333333331 14456666677788
Q ss_pred HHhcCChHHHHHHHH
Q 047767 564 LGRAGILDKAEELLQ 578 (666)
Q Consensus 564 ~~~~g~~~~A~~~~~ 578 (666)
+.+.|+.++|.++|-
T Consensus 101 L~rLg~~~~A~~lfL 115 (235)
T 2d2s_A 101 MIKLGLPEQALDLFL 115 (235)
T ss_dssp HHHTTCHHHHHHHHH
T ss_pred HHHCCChhHHHHHHH
Confidence 888999999988874
No 298
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=37.52 E-value=80 Score=27.21 Aligned_cols=32 Identities=6% Similarity=0.006 Sum_probs=23.6
Q ss_pred CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcC
Q 047767 585 DCMMWSSLLRSCRVHGNEIIGRRVANILMELE 616 (666)
Q Consensus 585 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 616 (666)
-...|......+...|++.+|.++|+..++..
T Consensus 149 ~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~ 180 (223)
T 4aez_C 149 SSIFYEEYANYFESRGLFQKADEVYQKGKRMK 180 (223)
T ss_dssp BHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC
Confidence 56667777777777788888888888877754
No 299
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=36.95 E-value=1.7e+02 Score=23.78 Aligned_cols=81 Identities=9% Similarity=0.048 Sum_probs=46.3
Q ss_pred HHHHHHhccCC--CCCHHHHHHHHHHHHHcCChhHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhH
Q 047767 469 ELSHQVFEKIP--SPNVVCFTSIMNGYSRNGMGREALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMK 545 (666)
Q Consensus 469 ~~A~~~~~~~~--~~~~~~~~~li~~~~~~~~~~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~ 545 (666)
+.+.+.|.... +.|+.....-+.---.. +++..+|..|..+|+--... -|......+...|++.+|.++|..-.
T Consensus 47 Erc~~~f~~~~~YknD~RyLklWl~ya~~~---~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi 123 (164)
T 2wvi_A 47 ERAVEALQGEKRYYSDPRFLNLWLKLGRLC---NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGI 123 (164)
T ss_dssp HHHHHHTTTCGGGTTCHHHHHHHHHHHHHC---SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHhhhhhhhccCHHHHHHHHHHHHhc---CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 44455555444 24544333333211112 34666777777777655433 45666666667777888888887777
Q ss_pred HhhCCCCC
Q 047767 546 SVYGIDAD 553 (666)
Q Consensus 546 ~~~~~~p~ 553 (666)
+. +-.|-
T Consensus 124 ~~-~A~P~ 130 (164)
T 2wvi_A 124 QQ-KAEPL 130 (164)
T ss_dssp HT-TCBSH
T ss_pred Hc-CCCcH
Confidence 66 55564
No 300
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.67 E-value=80 Score=21.78 Aligned_cols=62 Identities=13% Similarity=0.194 Sum_probs=36.2
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHcCC-ChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCCh
Q 047767 99 DEMVSHGIKESASTFSSVLSVCSNAG-FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161 (666)
Q Consensus 99 ~~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 161 (666)
+.+.+.|+..+..- ..++..+...+ ..-.+.++++.+.+.+...+..|....+..+...|-+
T Consensus 6 ~~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 6 TALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 34556676655443 44555555543 4556677777776665555556666666666655543
No 301
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural genomics of pathogenic protozoa consortium, SGPP, ANK repeat; 2.90A {Leishmania major}
Probab=34.31 E-value=1e+02 Score=28.98 Aligned_cols=19 Identities=26% Similarity=0.085 Sum_probs=9.1
Q ss_pred hHhcCCChhhHHHHhhcCC
Q 047767 53 DFVKSGHLNSAKKLFDEMP 71 (666)
Q Consensus 53 ~~~~~g~~~~A~~~~~~~~ 71 (666)
..+..|+.+-+..+++.-.
T Consensus 59 ~A~~~g~~~~v~~Ll~~g~ 77 (364)
T 3ljn_A 59 LACKFGCVDTAKYLASVGE 77 (364)
T ss_dssp HHHHHCCHHHHHHHHHHCC
T ss_pred HHHHcCCHHHHHHHHHCCC
Confidence 3344555555555554433
No 302
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.84 E-value=92 Score=27.37 Aligned_cols=52 Identities=10% Similarity=-0.080 Sum_probs=26.2
Q ss_pred hhcCCChhhHHHHHHHHHhCCCCCCccc-------HHHHHHHHH--cCCChHHHHHHHHHH
Q 047767 85 CGKFRHPKQALYLYDEMVSHGIKESAST-------FSSVLSVCS--NAGFYTEGIQIHCRV 136 (666)
Q Consensus 85 ~~~~~~~~~a~~~~~~m~~~~~~~~~~~-------~~~ll~~~~--~~~~~~~a~~~~~~~ 136 (666)
.++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 12 A~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 12 IVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 3455666666666666655554444222 223333322 456666655555543
No 303
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=33.70 E-value=86 Score=24.83 Aligned_cols=61 Identities=8% Similarity=0.009 Sum_probs=31.0
Q ss_pred HHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCCh
Q 047767 100 EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPS 161 (666)
Q Consensus 100 ~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~ 161 (666)
.+.+.|+++++.- ..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+
T Consensus 12 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 12 TLKETGVRITPQR-HAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3455555544332 234444444444555666666665555444555555555555555543
No 304
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=33.55 E-value=2.5e+02 Score=25.72 Aligned_cols=202 Identities=11% Similarity=0.021 Sum_probs=96.5
Q ss_pred HHHHHHHHHccCChHHHHHHhccCCCCC--hhhHHHHHHHHHcCCC--hHHHHHHHHHhHhcCCCCChhh---HHHHHHH
Q 047767 250 ANALVDFYSACGSLIEAKKSFDFIPVDD--VISWNSIVSIYADYDL--IFDALELFFRMQLCRKRPSIRS---FVEFLNF 322 (666)
Q Consensus 250 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~li~~~~~~g~--~~~a~~~~~~m~~~~~~p~~~t---~~~ll~~ 322 (666)
...++.-|...|+.++|...++++..|. ......+|..-...++ .+.+-.++..+.. ++-+.... |..++..
T Consensus 6 ~~~ii~EYf~~~d~~Ea~~~l~el~~p~~~~~~v~~~i~~aldr~~~erE~~s~LLs~L~~-~~ls~~~i~~gf~~ll~~ 84 (307)
T 2zu6_B 6 LTPIIQEYFEHGDTNEVAEMLRDLNLGEMKSGVPVLAVSLALEGKASHREMTSKLLSDLCG-TVMSTTDVEKSFDKLLKD 84 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTCCGGGGGGHHHHHHHHHHTSCHHHHHHHHHHHHHHHH-HTBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCcchHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHh
Confidence 4678888999999999999999998654 2223334443333333 3445566677753 33333322 3334433
Q ss_pred HhccC-ChhhHHHHHHHHHH----hCCCCCchhHHhHHHHHHHhcCC--hHHHHHHhcc------CC---C-CCc----c
Q 047767 323 ASRTG-NVYFGKQIHGYVTK----LGFDHGSVHVQSALTDMYGKCNV--IESSVAVFES------AP---G-RSL----E 381 (666)
Q Consensus 323 ~~~~~-~~~~a~~~~~~~~~----~~~~~~~~~~~~~l~~~~~~~~~--~~~a~~~~~~------~~---~-~~~----~ 381 (666)
+.... |...|...+..+.. .+.-|+.. +...........|. +..|..++.. +. . .+. .
T Consensus 85 ldDl~lD~P~a~~~la~flaraV~d~~l~~~~-l~~~~~~~~~~~g~~~l~~a~~~l~~~~~~~~~~~~WG~~~~~~~~e 163 (307)
T 2zu6_B 85 LPELALDTPRAPQLVGQFIARAVGDGILCNTY-IDSYKGTVDCVQARAALDKATVLLSMSKGGKRKDSVWGSGGGQQSVN 163 (307)
T ss_dssp HHHHHHHCTTHHHHHHHHHHHHHHTTSSCTTT-TGGGTTTCCCHHHHHHHHHHHHHHHTCC----CCCSSCCCSTTSCHH
T ss_pred hhHhcccccchHHHHHHHHHHHHHhCCCCHHH-HHHHHhcccchHHHHHHHHHHHHhcccccHhHHhhhcCCCCCCCCHH
Confidence 33322 33444444444333 23222111 10000000000000 2223223311 10 0 011 0
Q ss_pred ----cHHHHHHHHHhcCChhHHHHHHHHHHHcCCCCCHHHHHHHhchhhhhcc--cchhhHHHHHHHHHHhCCCCchHHH
Q 047767 382 ----CCNSLMTSLLHSGNIKDAVEMFGFMVDEGIGLDEVTLSTTLKALSVSAS--ANLGSCRLLHCCAIKSGFESNIAVS 455 (666)
Q Consensus 382 ----~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~~~~~ll~~~~~~~~--~~~~~a~~~~~~~~~~~~~~~~~~~ 455 (666)
..+.++.-|...|+.++|...++++..-...+ ......+..+ ..+. ...+....++..+.+.|+-+.....
T Consensus 164 elkkki~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~a--lE~~~~~~re~~~~LL~~L~~~~~ls~~q~~ 240 (307)
T 2zu6_B 164 HLVKEIDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMV--LESTGESTFKMILDLLKSLWKSSTITVDQMK 240 (307)
T ss_dssp HHHHHHHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHH--HTCCSSHHHHHHHHHHHHHHHHCSSCHHHHH
T ss_pred HHHHHHHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHH--HccCChHHHHHHHHHHHHHHHCCCCCHHHHH
Confidence 24678888888999999999998885221111 1222233333 2222 2244555666666666665554443
Q ss_pred H
Q 047767 456 C 456 (666)
Q Consensus 456 ~ 456 (666)
.
T Consensus 241 ~ 241 (307)
T 2zu6_B 241 R 241 (307)
T ss_dssp H
T ss_pred H
Confidence 3
No 305
>3i5p_A Nucleoporin NUP170; helical stack, membrane, mRNA transport, nuclear pore complex, nucleus, phosphoprotein, protein transport; 3.20A {Saccharomyces cerevisiae}
Probab=33.28 E-value=3.8e+02 Score=26.78 Aligned_cols=69 Identities=14% Similarity=0.007 Sum_probs=41.9
Q ss_pred CCCCCHHHHHHHHHHHHhhCChHHHHH----HHHH-HHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 581 PGGGDCMMWSSLLRSCRVHGNEIIGRR----VANI-LMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 581 ~~~~~~~~~~~l~~~~~~~~~~~~a~~----~~~~-~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
...+|......+..-+..+|-.++-++ .++. +.+..|++......|...|.+.|++-+|.+++-.+...
T Consensus 173 l~s~DelFH~~LYdWli~~gl~d~LL~i~sPfle~yL~r~~~~~~~~~dLLWryy~k~~~~~~AA~VL~~LA~s 246 (525)
T 3i5p_A 173 LKYNDRLFHYHMYDWLVSQNREEKLLDIETPFILPYLMEKAGSSLKISNILWVYYSRRSKFFESAEILYRLATS 246 (525)
T ss_dssp SSSCCHHHHHHHHHHHHHTTCGGGGGGCCCTTHHHHHHHTCC---CHHHHHHTHHHHCCSHHHHHHHHHHHHSS
T ss_pred HcCChHHHHHHHHHHHHhCCCcchhhcCCCchHHHHHHhcCccchhHHHHHHHHHHHcccHHHHHHHHHHHHhC
Confidence 345566666666666666665444321 1111 11244666666777778888899999999998888766
No 306
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=33.28 E-value=2.2e+02 Score=24.08 Aligned_cols=14 Identities=21% Similarity=0.394 Sum_probs=6.3
Q ss_pred hcCCChhhHHHHhh
Q 047767 55 VKSGHLNSAKKLFD 68 (666)
Q Consensus 55 ~~~g~~~~A~~~~~ 68 (666)
+..|+.+-+..+++
T Consensus 48 ~~~g~~~~v~~Ll~ 61 (231)
T 3aji_A 48 CSAGHTEIVEFLLQ 61 (231)
T ss_dssp HHHTCHHHHHHHHH
T ss_pred HHcCcHHHHHHHHH
Confidence 34444444444444
No 307
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6, ankyrin reapeat, ANK RE calcium channel, calcium transport, calmodulin-binding; 1.70A {Mus musculus}
Probab=31.49 E-value=2.4e+02 Score=23.91 Aligned_cols=19 Identities=16% Similarity=0.092 Sum_probs=11.4
Q ss_pred HHhHhcCCChhhHHHHhhc
Q 047767 51 IDDFVKSGHLNSAKKLFDE 69 (666)
Q Consensus 51 ~~~~~~~g~~~~A~~~~~~ 69 (666)
+...++.|+.+.+..+++.
T Consensus 7 L~~A~~~g~~~~v~~Ll~~ 25 (232)
T 2rfa_A 7 LLLAAKENDVQALSKLLKF 25 (232)
T ss_dssp HHHHHHTTCHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHHh
Confidence 3444566666666666664
No 308
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=31.40 E-value=1.8e+02 Score=24.81 Aligned_cols=111 Identities=14% Similarity=0.099 Sum_probs=55.5
Q ss_pred HhHhcCCChhhHHHHhhcCCCC---CchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCccc---HHHHHHHHHcCCC
Q 047767 52 DDFVKSGHLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST---FSSVLSVCSNAGF 125 (666)
Q Consensus 52 ~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~---~~~ll~~~~~~~~ 125 (666)
...++.|+++.+..+++.-..+ +..-. ..+...++.|+.+ +++.+.+.|..++... -...+...+..|+
T Consensus 14 ~~A~~~g~~~~~~~Ll~~g~~~~~~~~~g~-t~L~~A~~~~~~~----~v~~Ll~~~~~~~~~~~~~~~t~L~~A~~~~~ 88 (240)
T 3eu9_A 14 VKATQYGIYERCRELVEAGYDVRQPDKENV-TLLHWAAINNRID----LVKYYISKGAIVDQLGGDLNSTPLHWATRQGH 88 (240)
T ss_dssp HHHHHTTCHHHHHHHHHTTCCTTCCCTTSC-CHHHHHHHTTCHH----HHHHHHHTTCCTTCCBTTTTBCHHHHHHHHTC
T ss_pred HHHHHcCChHHHHHHHHcCCCcCCCCCCCC-CHHHHHHHhCCHH----HHHHHHHcCCcchhhcCCcCCChhHHHHHcCC
Confidence 3456788888888888764332 22212 2344445566654 4444445554333221 1233444455566
Q ss_pred hHHHHHHHHHHHHhcCCCchhh--hhHHHHHhHhcCChhHHHHhhccC
Q 047767 126 YTEGIQIHCRVLSLGFGLNLYI--GSPLVDLYMRMGPSVRALDLFDEL 171 (666)
Q Consensus 126 ~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~ 171 (666)
.+-+ +.+.+.|..++... -...+...+..|+.+-+..+++.-
T Consensus 89 ~~~v----~~Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~~~~Ll~~~ 132 (240)
T 3eu9_A 89 LSMV----VQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLIAKG 132 (240)
T ss_dssp HHHH----HHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred HHHH----HHHHHcCCCCcccCCCCCCHHHHHHHcCHHHHHHHHHhcC
Confidence 5543 44445555544321 123344455667776666666543
No 309
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.57 E-value=50 Score=28.05 Aligned_cols=51 Identities=10% Similarity=0.167 Sum_probs=29.8
Q ss_pred HHHHHHHHHHhHHhhCCCCC-chHHH-----HHHHHHHhcCChHHHHHHHHhCCCCC
Q 047767 534 VKEGQLVFNSMKSVYGIDAD-RQHYS-----CMIDMLGRAGILDKAEELLQQTPGGG 584 (666)
Q Consensus 534 ~~~a~~~~~~~~~~~~~~p~-~~~~~-----~l~~~~~~~g~~~~A~~~~~~~~~~~ 584 (666)
++.|+.+|+.+.....+..+ ..... ..+-.|.+.|.+++|.+++++...++
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~~ 144 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSKD 144 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTTC
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcCC
Confidence 56777788777765221111 11111 23345677888888888888766443
No 310
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=30.48 E-value=1.8e+02 Score=25.36 Aligned_cols=29 Identities=7% Similarity=0.017 Sum_probs=19.8
Q ss_pred CcchHHHHHHHHhhcCCchHHHHHHHHHH
Q 047767 619 DFAVYSQVSNFYSEIGEFEVSMQIRETAL 647 (666)
Q Consensus 619 ~~~~~~~l~~~~~~~g~~~~A~~~~~~~~ 647 (666)
++......+..+.+.|+-++|.++|=+.+
T Consensus 90 ~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 90 EIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 44555666677777788888887776554
No 311
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein structure initiati midwest center F or structural genomics, MCSG; 1.77A {Leptotrichia buccalis}
Probab=30.39 E-value=2e+02 Score=23.64 Aligned_cols=50 Identities=16% Similarity=0.217 Sum_probs=24.3
Q ss_pred HHHHHHHHhHh-cCCCCChhhH--HHHHHHHhccCChhhHHHHHHHHHHhCCC
Q 047767 296 DALELFFRMQL-CRKRPSIRSF--VEFLNFASRTGNVYFGKQIHGYVTKLGFD 345 (666)
Q Consensus 296 ~a~~~~~~m~~-~~~~p~~~t~--~~ll~~~~~~~~~~~a~~~~~~~~~~~~~ 345 (666)
.-..+++.+.+ .|..++.... .+-+....+.|..+.+.-+.+...+.+..
T Consensus 131 ~~~~iv~~Ll~~~gad~~~~d~~G~TpL~~A~~~~~~~~v~~L~~~~~~~~~~ 183 (186)
T 3t8k_A 131 EMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMEDYIKKYNLK 183 (186)
T ss_dssp HHHHHHHHHHTSTTCCTTCCCTTSCCHHHHHHTTTCHHHHHHHHHHHHHHTCC
T ss_pred hHHHHHHHHHHhcCCCCcccCCCCCCHHHHHHHcCCHHHHHHHHHHHHHHhcc
Confidence 34455566666 6655543221 12333444556555555555555554443
No 312
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=30.37 E-value=51 Score=23.95 Aligned_cols=37 Identities=19% Similarity=0.194 Sum_probs=23.5
Q ss_pred CChhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhH
Q 047767 58 GHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQA 94 (666)
Q Consensus 58 g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a 94 (666)
.+.+.|.++++.++++...+|..++.++...|+..-|
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La 87 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLA 87 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHH
Confidence 3566677777777766666777777777655554433
No 313
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=30.29 E-value=2.9e+02 Score=24.57 Aligned_cols=19 Identities=5% Similarity=0.015 Sum_probs=10.1
Q ss_pred HHhHhcCCChhhHHHHhhc
Q 047767 51 IDDFVKSGHLNSAKKLFDE 69 (666)
Q Consensus 51 ~~~~~~~g~~~~A~~~~~~ 69 (666)
+...++.|+++-+..+++.
T Consensus 35 L~~A~~~g~~~~v~~Ll~~ 53 (285)
T 3kea_A 35 SYYAIADNNVRLVCTLLNA 53 (285)
T ss_dssp HHHHHHTTCHHHHHHHHHT
T ss_pred HHHHHHcCCHHHHHHHHhC
Confidence 3334455666666555554
No 314
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A 2dwz_A* 1tr4_A 1uoh_A 1qym_A
Probab=29.42 E-value=2.6e+02 Score=23.64 Aligned_cols=113 Identities=18% Similarity=0.118 Sum_probs=54.8
Q ss_pred HHHhHhcCCChhhHHHHhhcCCC----CCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCccc--HHHHHHHHHcC
Q 047767 50 TIDDFVKSGHLNSAKKLFDEMPA----RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESAST--FSSVLSVCSNA 123 (666)
Q Consensus 50 l~~~~~~~g~~~~A~~~~~~~~~----~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~--~~~ll~~~~~~ 123 (666)
.+...++.|+++....+++.-+. ++..-++.|. ..+..|+.+ +++.+.+.|..++... -.+.+...+..
T Consensus 9 ~l~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t~L~-~A~~~g~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~ 83 (231)
T 3aji_A 9 MICNLAYSGKLDELKERILADKSLATRTDQDSRTALH-WACSAGHTE----IVEFLLQLGVPVNDKDDAGWSPLHIAASA 83 (231)
T ss_dssp HHHHHHHHTCHHHHHHHHHHCGGGGGCCCTTSCCHHH-HHHHHTCHH----HHHHHHHTTCCSCCCCTTSCCHHHHHHHH
T ss_pred hHHHHHHhCCHHHHHHHHHhchhhhhcCCCCCCCHHH-HHHHcCcHH----HHHHHHHhCCCCCCcCCCCCCHHHHHHHc
Confidence 45566778888888888766432 2332233333 334455543 4444455555444321 11233334455
Q ss_pred CChHHHHHHHHHHHHhcCCCchhh--hhHHHHHhHhcCChhHHHHhhccC
Q 047767 124 GFYTEGIQIHCRVLSLGFGLNLYI--GSPLVDLYMRMGPSVRALDLFDEL 171 (666)
Q Consensus 124 ~~~~~a~~~~~~~~~~~~~~~~~~--~~~ll~~~~~~g~~~~a~~~~~~~ 171 (666)
|+.+ +++.+.+.|..++... -.+.+...+..|+.+-+..+++.-
T Consensus 84 ~~~~----~v~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~Ll~~g 129 (231)
T 3aji_A 84 GXDE----IVKALLVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGG 129 (231)
T ss_dssp TCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHTTCHHHHHHHHHTT
T ss_pred CHHH----HHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCHHHHHHHHHcC
Confidence 6654 3344445554443221 122334445556666666555543
No 315
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=28.29 E-value=4e+02 Score=25.49 Aligned_cols=20 Identities=20% Similarity=0.303 Sum_probs=10.7
Q ss_pred HHHhHhcCChhHHHHhhccC
Q 047767 152 VDLYMRMGPSVRALDLFDEL 171 (666)
Q Consensus 152 l~~~~~~g~~~~a~~~~~~~ 171 (666)
+...++.|+.+-+..+++.-
T Consensus 117 L~~A~~~g~~~~v~~Ll~~~ 136 (437)
T 1n11_A 117 LHIAAREGHVETVLALLEKE 136 (437)
T ss_dssp HHHHHHHTCHHHHHHHHHTT
T ss_pred HHHHHHcCCHHHHHHHHhCC
Confidence 33445556666666555543
No 316
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=27.60 E-value=2.8e+02 Score=23.50 Aligned_cols=204 Identities=11% Similarity=-0.010 Sum_probs=98.7
Q ss_pred hhhccCCCccchhhhhhcccCCCCCch---hhhhHHHHhHhcCCChhhHHHHhhcCCCC---CchhHHHHHHHhhcCCCh
Q 047767 18 PTCTSIVPLSSSLLLDSYCQPNPQLNI---YSSNRTIDDFVKSGHLNSAKKLFDEMPAR---DMVTYNLLISGCGKFRHP 91 (666)
Q Consensus 18 ~~~~~~~~~~~a~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~A~~~~~~~~~~---~~~~~~~ll~~~~~~~~~ 91 (666)
...+..|+.+.+..+.+. |..++. ..+ ..+...++.|+.+-+..+++.-..+ +..-.+. +...+..|+.
T Consensus 16 ~~A~~~g~~~~v~~Ll~~---g~~~~~~~~~g~-t~L~~A~~~~~~~~v~~Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~ 90 (237)
T 3b7b_A 16 HAAAEAGHVDICHMLVQA---GANIDTCSEDQR-TPLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTC-LHLAAKKGHY 90 (237)
T ss_dssp HHHHHHTCHHHHHHHHHT---TCCTTCCCTTCC-CHHHHHHHTTCHHHHHHHHTTTCCCCCCCTTSCCH-HHHHHHTTCH
T ss_pred HHHHHcCcHHHHHHHHHc---CCCcCccCCCCC-CHHHHHHHhCCHHHHHHHHhCCCCCCCCCCCCCcH-HHHHHHcCCH
Confidence 333445666655555543 332222 222 3445556778888887777654322 2222222 2233345554
Q ss_pred hhHHHHHHHHHhCC-CCCCccc--HHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchh--hhhHHHHHhHhcCChhHHHH
Q 047767 92 KQALYLYDEMVSHG-IKESAST--FSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLY--IGSPLVDLYMRMGPSVRALD 166 (666)
Q Consensus 92 ~~a~~~~~~m~~~~-~~~~~~~--~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~ll~~~~~~g~~~~a~~ 166 (666)
+ +++.+.+.| ..++... -.+.+...+..|+.+ +++.+.+.|..++.. .-.+.+...+..|+.+-+.-
T Consensus 91 ~----~~~~Ll~~~~~~~~~~~~~g~t~L~~A~~~~~~~----~~~~Ll~~g~~~~~~~~~g~t~L~~A~~~~~~~~~~~ 162 (237)
T 3b7b_A 91 E----VVQYLLSNGQMDVNCQDDGGWTPMIWATEYKHVD----LVKLLLSKGSDINIRDNEENICLHWAAFSGCVDIAEI 162 (237)
T ss_dssp H----HHHHHHTTTCCCTTCCCTTSCCHHHHHHHTTCHH----HHHHHHHTTCCTTCCCTTSCCHHHHHHHHCCHHHHHH
T ss_pred H----HHHHHHhCCCCCcccCCCCCCCHHHHHHHcCCHH----HHHHHHHCCCCCCccCCCCCCHHHHHHHCCCHHHHHH
Confidence 4 444444444 2222111 112334444556654 444455566554432 12234455566778777777
Q ss_pred hhccCCCCCc---ccHHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHh--hHHHHHHHhcccCChHHHHHHHHHHHH
Q 047767 167 LFDELPERNL---ATWNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGL--SFCYMVRGCSIGMLLDEGKQLHSHVIK 239 (666)
Q Consensus 167 ~~~~~~~~~~---~~~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~--t~~~ll~~~~~~~~~~~a~~~~~~~~~ 239 (666)
+++.-..++. .-.+. +...++.|+.+ +++.+.+.|..++.. .-.+.+......|+...+.++.+.+.+
T Consensus 163 Ll~~g~~~~~~~~~g~t~-L~~A~~~~~~~----~v~~Ll~~gad~~~~d~~g~t~l~~A~~~~~~~~~~~l~~~l~d 235 (237)
T 3b7b_A 163 LLAAKCDLHAVNIHGDSP-LHIAARENRYD----CVVLFLSRDSDVTLKNKEGETPLQCASLNSQVWSALQMSKALQD 235 (237)
T ss_dssp HHTTTCCTTCCCTTCCCH-HHHHHHTTCHH----HHHHHHTTTCCTTCCCTTSCCHHHHSCTTCHHHHHHHHHHHHHH
T ss_pred HHHcCCCCCCcCCCCCCH-HHHHHHhCCHh----HHHHHHHcCCCCCccCCCCCCHHHHHHHHHHHHHHHHHHHHhhc
Confidence 7665444322 22223 33344556554 334444556554322 112344455666777777777766654
No 317
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=27.59 E-value=1.5e+02 Score=23.51 Aligned_cols=64 Identities=13% Similarity=0.053 Sum_probs=41.2
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChh
Q 047767 98 YDEMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162 (666)
Q Consensus 98 ~~~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 162 (666)
-+.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 15 ~~~l~~~g~r~T~q-R~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 15 RMSIKKNGLKNSKQ-REEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHHCC--CHHH-HHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 34466677765443 34556666666667788888888887776667666666677777766543
No 318
>3mkr_B Coatomer subunit alpha; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=26.73 E-value=3.8e+02 Score=24.63 Aligned_cols=59 Identities=14% Similarity=0.019 Sum_probs=41.5
Q ss_pred HHhCCCCC--CHHHHHHHHHHHHhhCChHHHHHHHHHHHhcCCCCcchHHHHHHHHhhcCCchHHHHHHHHHHhC
Q 047767 577 LQQTPGGG--DCMMWSSLLRSCRVHGNEIIGRRVANILMELEPVDFAVYSQVSNFYSEIGEFEVSMQIRETALAR 649 (666)
Q Consensus 577 ~~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 649 (666)
|-.....| -..++...+....+.+|+..|-.+.++++++.|+. . ..++|.++...-.+.
T Consensus 187 FT~c~Lqp~H~~LaLr~AM~~a~K~KNy~tAa~fArrLLel~p~~-~-------------~~~qArkil~~ce~~ 247 (320)
T 3mkr_B 187 FTHSNLQPVHMILVLRTALNLFFKLKNFRTAAAFARRLLELGPKP-E-------------VAQQTRKILSACEKN 247 (320)
T ss_dssp HTTSCCCHHHHHHHHHHHHHHHHHTTBHHHHHHHHHHHHHTCCCH-H-------------HHHHHHHHHHHHHHS
T ss_pred hccCCCcHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHhcCCCH-H-------------HHHHHHHHHHHHhcC
Confidence 44444455 34566677778899999999999999999998752 1 335577776655443
No 319
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=26.73 E-value=3.7e+02 Score=24.56 Aligned_cols=62 Identities=8% Similarity=0.033 Sum_probs=37.1
Q ss_pred HHHHHHHHHhcCCchHHHHHHHHHHHcCCCCCHhhHHHHHHHhcccC--ChHHHHHHHHHHHHhC
Q 047767 179 WNLMLRAFCELSRPDEVLRMYNKMKAEGVEPNGLSFCYMVRGCSIGM--LLDEGKQLHSHVIKLG 241 (666)
Q Consensus 179 ~~~li~~~~~~~~~~~a~~~~~~m~~~~~~p~~~t~~~ll~~~~~~~--~~~~a~~~~~~~~~~~ 241 (666)
.+.++.-|...|+.++|.+.++++......+ ......+..++-+.+ ..+....++..+.+.|
T Consensus 169 i~~lL~EY~~~~D~~EA~~ci~EL~~p~f~~-e~V~~ai~~alE~~~~~~re~~~~LL~~L~~~~ 232 (307)
T 2zu6_B 169 IDMLLKEYLLSGDISEAEHCLKELEVPHFHH-ELVYEAIIMVLESTGESTFKMILDLLKSLWKSS 232 (307)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCGGGHH-HHHHHHHHHHHTCCSSHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHcCCCcchH-HHHHHHHHHHHccCChHHHHHHHHHHHHHHHCC
Confidence 5678888888899999999988876321111 122233333343432 2455667777777666
No 320
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=26.49 E-value=99 Score=25.08 Aligned_cols=70 Identities=7% Similarity=0.002 Sum_probs=47.0
Q ss_pred hhHHHHHH-HHHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHh--cCCCchhhhhHHHHHhHhcCChh
Q 047767 92 KQALYLYD-EMVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSL--GFGLNLYIGSPLVDLYMRMGPSV 162 (666)
Q Consensus 92 ~~a~~~~~-~m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~ll~~~~~~g~~~ 162 (666)
+.+++-+. .+++.|++++.. -..++..+...+..-.|.++++.+.+. +...+..|-..-+..+...|-+.
T Consensus 14 ~~~~~~~~~~L~~~g~r~T~q-R~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 14 DVLLERFKKILRQGGLKYTKQ-REVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHTCCCCHH-HHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 44454444 345667776543 456677777777778888888888877 66666666666677777777544
No 321
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=26.38 E-value=1.2e+02 Score=24.12 Aligned_cols=54 Identities=9% Similarity=0.038 Sum_probs=35.9
Q ss_pred CCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCh
Q 047767 73 RDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126 (666)
Q Consensus 73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 126 (666)
+....-..++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 24 r~T~qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 77 (150)
T 2xig_A 24 KNSKQREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFI 77 (150)
T ss_dssp -CHHHHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcE
Confidence 334445567777777777889999999998876556666655555555555443
No 322
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=25.46 E-value=2.9e+02 Score=25.73 Aligned_cols=59 Identities=10% Similarity=0.096 Sum_probs=34.2
Q ss_pred HHHHHHHHccCChHHHHHHhccCCCCCh---hhHHHHHHHHHcCC-ChHHHHHHHHHhHhcCC
Q 047767 251 NALVDFYSACGSLIEAKKSFDFIPVDDV---ISWNSIVSIYADYD-LIFDALELFFRMQLCRK 309 (666)
Q Consensus 251 ~~l~~~~~~~~~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~g-~~~~a~~~~~~m~~~~~ 309 (666)
..++.-|...|+.++|.+.++++..|.- .....+..++-+.. ..+.+..++..+.+.|+
T Consensus 15 ~~ll~Ey~~~~d~~Ea~~ci~el~~p~~~~~~v~~~i~~~le~~~~~re~~~~Ll~~L~~~~~ 77 (339)
T 1ug3_A 15 KAIIEEYLHLNDMKEAVQCVQELASPSLLFIFVRHGVESTLERSAIAREHMGQLLHQLLCAGH 77 (339)
T ss_dssp HHHHHHHHHHCCHHHHHHHHHTTCCGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHTTS
T ss_pred HHHHHHHHhCCCHHHHHHHHHHcCCcccHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHCCC
Confidence 5567778888999999999999876531 11222222222211 23455566666665554
No 323
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=25.36 E-value=89 Score=24.51 Aligned_cols=41 Identities=15% Similarity=0.056 Sum_probs=19.6
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 047767 80 LLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVC 120 (666)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~ 120 (666)
.++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+
T Consensus 18 ~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L 58 (139)
T 3mwm_A 18 AVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSL 58 (139)
T ss_dssp HHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHH
Confidence 34444444445555666666655554444444433333333
No 324
>1wgl_A TOLL-interacting protein; CUE domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, immune system; NMR {Homo sapiens} SCOP: a.5.2.4
Probab=25.32 E-value=74 Score=20.54 Aligned_cols=47 Identities=4% Similarity=-0.038 Sum_probs=25.2
Q ss_pred HHHHHHHhcCCCCcchHHHHHHHH-hhcCCchHHHHHHHHHHhCCCCcCC
Q 047767 607 RVANILMELEPVDFAVYSQVSNFY-SEIGEFEVSMQIRETALARKLTRDI 655 (666)
Q Consensus 607 ~~~~~~~~~~p~~~~~~~~l~~~~-~~~g~~~~A~~~~~~~~~~~~~~~~ 655 (666)
+.++.+.++.|+- ....+-.++ ...|+.+.|+..+-.|...+..++.
T Consensus 11 e~l~~L~emFP~l--d~~~I~~vL~a~~gdvd~aI~~LL~m~~~~~~~~~ 58 (59)
T 1wgl_A 11 EDLKAIQDMFPNM--DQEVIRSVLEAQRGNKDAAINSLLQMGEEPSGPSS 58 (59)
T ss_dssp HHHHHHHHHCSSS--CHHHHHHHHTTTTTCHHHHHHHHHHSSCCCCSCCC
T ss_pred HHHHHHHHHCCCC--CHHHHHHHHHHcCCCHHHHHHHHHcCcCCCCCCCC
Confidence 3444455566642 222333333 4456777777777666655555443
No 325
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=25.31 E-value=3e+02 Score=30.18 Aligned_cols=52 Identities=10% Similarity=0.065 Sum_probs=40.2
Q ss_pred HHHhHhcCCChhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHH
Q 047767 50 TIDDFVKSGHLNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMV 102 (666)
Q Consensus 50 l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~ 102 (666)
++..|...|..+-|.++....+.....+ -.+..+|...|++++|.++|++.-
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~~~t~~~~-yv~gr~~L~~ge~~~A~~~F~kAA 867 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWLNSDPIAV-YLKALIYLKSKEAVKAVRCFKTTS 867 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGCCSSHHHH-HHHHHHHHHTTCHHHHHHHHHTCC
T ss_pred HHHHHHHhcHHHHHHHHHhhcCCChHHH-HHHHHHHHHcCCHHHHHHHHHHHh
Confidence 7777888889888888887777643333 356678889999999999998753
No 326
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat, alternative splicing, ANK repeat, chromatin regulator, nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP: k.37.1.1 PDB: 3b95_A*
Probab=25.24 E-value=2.7e+02 Score=23.66 Aligned_cols=20 Identities=20% Similarity=0.177 Sum_probs=9.5
Q ss_pred HHHhccCChhhHHHHHHHHH
Q 047767 321 NFASRTGNVYFGKQIHGYVT 340 (666)
Q Consensus 321 ~~~~~~~~~~~a~~~~~~~~ 340 (666)
......|+...+.++.+.+.
T Consensus 215 ~~A~~~~~~~~~~~l~~~l~ 234 (237)
T 3b7b_A 215 QCASLNSQVWSALQMSKALQ 234 (237)
T ss_dssp HHSCTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHhh
Confidence 33444455555555544443
No 327
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=25.12 E-value=93 Score=24.05 Aligned_cols=45 Identities=18% Similarity=0.154 Sum_probs=24.9
Q ss_pred HHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCC
Q 047767 80 LLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124 (666)
Q Consensus 80 ~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 124 (666)
.++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 15 ~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 15 AISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 345555555556667777777666654445545444444444444
No 328
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=24.85 E-value=2.1e+02 Score=22.03 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=11.8
Q ss_pred HHHHHhHhcCChhHHHHhhccCCC
Q 047767 150 PLVDLYMRMGPSVRALDLFDELPE 173 (666)
Q Consensus 150 ~ll~~~~~~g~~~~a~~~~~~~~~ 173 (666)
.++.-|...|+.++|.+.++++..
T Consensus 12 ~ll~EY~~~~D~~Ea~~cl~eL~~ 35 (129)
T 2nsz_A 12 MLLKEYLLSGDISEAEHCLKELEV 35 (129)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHcCCCHHHHHHHHHHhCC
Confidence 344445555555555555555443
No 329
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=24.58 E-value=2.6e+02 Score=24.02 Aligned_cols=53 Identities=8% Similarity=0.136 Sum_probs=34.9
Q ss_pred hHHHHHHHHHHHcCCCCCHH-HHHHHHHHhcCCCcHHHHHHHHHHhHHhhCCCCC
Q 047767 500 REALDMLEVMIQRGLIPDKV-TFLCVLAGCNHSGMVKEGQLVFNSMKSVYGIDAD 553 (666)
Q Consensus 500 ~~a~~~~~~m~~~g~~p~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~ 553 (666)
+++..+|..|...|+--... -|......+...|++.+|.++|+.-.+. +-.|-
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~-~A~P~ 184 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRM-KAKPF 184 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-TCBSH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCccH
Confidence 46667777777776655433 4566666666777777777777777666 55553
No 330
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=24.49 E-value=1.5e+02 Score=23.03 Aligned_cols=62 Identities=15% Similarity=0.158 Sum_probs=38.3
Q ss_pred HHHhCCCCCCcccHHHHHHHHHcCC-ChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChh
Q 047767 100 EMVSHGIKESASTFSSVLSVCSNAG-FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162 (666)
Q Consensus 100 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 162 (666)
.+++.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 8 ~l~~~g~r~T~qR-~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLPR-VKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 4566676655443 34555565555 56677888888877766666666666666666666543
No 331
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=24.38 E-value=1.3e+02 Score=23.79 Aligned_cols=58 Identities=16% Similarity=0.152 Sum_probs=27.7
Q ss_pred HHhCCCCCCcccHHHHHHHHHcCCChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCC
Q 047767 101 MVSHGIKESASTFSSVLSVCSNAGFYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGP 160 (666)
Q Consensus 101 m~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~ 160 (666)
+++.|++++..- ..++..+...+ .-.|.++++.+.+.+...+..|...-+..+...|-
T Consensus 10 L~~~g~r~T~qR-~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Gl 67 (145)
T 3eyy_A 10 LRQRGYRLTPQR-QLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGL 67 (145)
T ss_dssp HHTTTCCCCHHH-HHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTS
T ss_pred HHHcCCCcCHHH-HHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCc
Confidence 444555544332 23333333333 44555666655555544455444444555555554
No 332
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=24.20 E-value=1.6e+02 Score=23.26 Aligned_cols=67 Identities=16% Similarity=0.076 Sum_probs=41.9
Q ss_pred hhhHHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCh
Q 047767 60 LNSAKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126 (666)
Q Consensus 60 ~~~A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 126 (666)
.+.+.+.+..---+....-..++..+...+.+-.|.++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 6 ~~~~~~~l~~~g~r~T~qR~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 72 (145)
T 2fe3_A 6 LKEALETLKETGVRITPQRHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLV 72 (145)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSE
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCE
Confidence 3444455544333444555667777777777888899999988776555666655555555555543
No 333
>2crb_A Nuclear receptor binding factor 2; NRBF-2, MIT domain, helix bundle, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: a.7.16.1
Probab=23.80 E-value=80 Score=22.50 Aligned_cols=22 Identities=9% Similarity=-0.174 Sum_probs=12.7
Q ss_pred HHHHHHHHhhCChHHHHHHHHH
Q 047767 590 SSLLRSCRVHGNEIIGRRVANI 611 (666)
Q Consensus 590 ~~l~~~~~~~~~~~~a~~~~~~ 611 (666)
.-....+.+.|++++|++..++
T Consensus 19 ~RrAe~ll~~gkydeAIech~k 40 (97)
T 2crb_A 19 SRRADRLLAAGKYEEAISCHRK 40 (97)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHH
T ss_pred hhHHHHHHhcCCHHHHHHHHHH
Confidence 3344555666666666666555
No 334
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=23.49 E-value=2.2e+02 Score=22.75 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHhccCCCCCH---HHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCC
Q 047767 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNV---VCFTSIMNGYSRNGM--GREALDMLEVMIQRGLIPD 517 (666)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 517 (666)
.+.++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+...|+-+.
T Consensus 12 i~~lL~EY~~~~D~~EA~~cl~EL~~p~f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 12 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHhCCCcchHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 45577788889999999999999876532 233444444444322 3456777777777665443
No 335
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=23.39 E-value=1.7e+02 Score=23.62 Aligned_cols=54 Identities=13% Similarity=0.079 Sum_probs=36.0
Q ss_pred CCchhHHHHHHHhhcCCChhhHHHHHHHHHhC--CCCCCcccHHHHHHHHHcCCCh
Q 047767 73 RDMVTYNLLISGCGKFRHPKQALYLYDEMVSH--GIKESASTFSSVLSVCSNAGFY 126 (666)
Q Consensus 73 ~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~ll~~~~~~~~~ 126 (666)
+.+..-..++..+...+.+-.|.++++.+.+. +...+..|.-..|+.+...|-+
T Consensus 30 r~T~qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv 85 (162)
T 4ets_A 30 KYTKQREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMV 85 (162)
T ss_dssp CCCHHHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCE
Confidence 44555677777887777888899999888876 5555555544445555555444
No 336
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=22.57 E-value=2.6e+02 Score=21.42 Aligned_cols=63 Identities=17% Similarity=0.295 Sum_probs=40.9
Q ss_pred HHHHHHHHHhhCCHHHHHHHhccCCCCCH---HHHHHHHHHHHHcCC--hhHHHHHHHHHHHcCCCCC
Q 047767 455 SCSLMDAYSRCGHIELSHQVFEKIPSPNV---VCFTSIMNGYSRNGM--GREALDMLEVMIQRGLIPD 517 (666)
Q Consensus 455 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~~---~~~~~li~~~~~~~~--~~~a~~~~~~m~~~g~~p~ 517 (666)
.+.++.-|...|+.++|.+.++++..|.. .....+..++-+.++ .+.+..++..+.+.|+-+.
T Consensus 10 i~~ll~EY~~~~D~~Ea~~cl~eL~~p~f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~is~ 77 (129)
T 2nsz_A 10 IDMLLKEYLLSGDISEAEHCLKELEVPHFHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 77 (129)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHTCGGGHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHcCCCHHHHHHHHHHhCCCccHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 34577778888999999999999876632 233344444444332 3556777777777665443
No 337
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=22.19 E-value=1.8e+02 Score=23.08 Aligned_cols=62 Identities=13% Similarity=0.174 Sum_probs=35.0
Q ss_pred HHHhCCCCCCcccHHHHHHHHHcCC-ChHHHHHHHHHHHHhcCCCchhhhhHHHHHhHhcCChh
Q 047767 100 EMVSHGIKESASTFSSVLSVCSNAG-FYTEGIQIHCRVLSLGFGLNLYIGSPLVDLYMRMGPSV 162 (666)
Q Consensus 100 ~m~~~~~~~~~~~~~~ll~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~ll~~~~~~g~~~ 162 (666)
.+.+.|++++..- ..++..+...+ ..-.|.++++.+.+.+...+..|...-+..+...|-+.
T Consensus 7 ~l~~~g~r~T~qR-~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 7 ALKDAGLKVTLPR-LKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHcCCCCCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3555666554433 34445554444 55566777777766655555555555566666666543
No 338
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=22.08 E-value=94 Score=24.61 Aligned_cols=61 Identities=13% Similarity=0.053 Sum_probs=36.6
Q ss_pred HHHHhhcCCCCCchhHHHHHHHhhcCCChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCC
Q 047767 63 AKKLFDEMPARDMVTYNLLISGCGKFRHPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAG 124 (666)
Q Consensus 63 A~~~~~~~~~~~~~~~~~ll~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~ 124 (666)
..+.+.+---+....-..++..+...+ +-.|.++++.+.+.+...+..|.-..|+.+...|
T Consensus 6 ~~~~L~~~g~r~T~qR~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 66 (145)
T 3eyy_A 6 WKSDLRQRGYRLTPQRQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELG 66 (145)
T ss_dssp HHHHHHTTTCCCCHHHHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHcCCCcCHHHHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCC
Confidence 444444443334445566667676666 7789999999888765555555444444444443
No 339
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=22.06 E-value=2.6e+02 Score=23.80 Aligned_cols=66 Identities=14% Similarity=0.131 Sum_probs=41.6
Q ss_pred hhHHHHHHHHHHHcCCCCCHH--HHH-----HHHHHhcCCCcHHHHHHHHHHhHHhhCCCCCchHHHHHHHHHHhc
Q 047767 499 GREALDMLEVMIQRGLIPDKV--TFL-----CVLAGCNHSGMVKEGQLVFNSMKSVYGIDADRQHYSCMIDMLGRA 567 (666)
Q Consensus 499 ~~~a~~~~~~m~~~g~~p~~~--~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 567 (666)
.+.|+.+|+.+.+.--.|+.. ... ..+-.|.+.|.+++|.+++++...+ .++..-...-+....+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~---~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK---DPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT---CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC---CCCchHHHHHHHHHHhc
Confidence 567999999998864333332 222 2334689999999999999998753 44544343333333333
No 340
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=21.87 E-value=80 Score=22.90 Aligned_cols=38 Identities=11% Similarity=0.051 Sum_probs=29.4
Q ss_pred CChHHHHHHhccCCCCCcccHHHHHHHHHhcCChhHHH
Q 047767 363 NVIESSVAVFESAPGRSLECCNSLMTSLLHSGNIKDAV 400 (666)
Q Consensus 363 ~~~~~a~~~~~~~~~~~~~~~~~li~~~~~~~~~~~a~ 400 (666)
...+.|.++++.++.+++..|..++.++...|+.+-|.
T Consensus 51 t~~~~ar~Lld~L~~rG~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 51 SRRDQARQLIIDLETRGSQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp CHHHHHHHHHHHHTTSCTTHHHHHHHHHHTTTCHHHHH
T ss_pred ChHHHHHHHHHHHHHcChHHHHHHHHHHHHcCcHHHHH
Confidence 46788888888888888888888888887767655443
No 341
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=21.16 E-value=1.6e+02 Score=23.32 Aligned_cols=54 Identities=17% Similarity=0.164 Sum_probs=36.2
Q ss_pred CCchhHHHHHHHhhcCC-ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCCh
Q 047767 73 RDMVTYNLLISGCGKFR-HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGFY 126 (666)
Q Consensus 73 ~~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~~ 126 (666)
+.+..-..++..+...+ .+-.|.++++.+.+.+...+..|.-..|+.+...|-+
T Consensus 14 r~T~qR~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv 68 (150)
T 2w57_A 14 KVTLPRLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIV 68 (150)
T ss_dssp CCCHHHHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSE
T ss_pred CCCHHHHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcE
Confidence 33445566777777776 7888999999998877656666655555555555443
No 342
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A 1ixv_A 1wg0_A
Probab=20.41 E-value=3e+02 Score=23.07 Aligned_cols=50 Identities=10% Similarity=-0.192 Sum_probs=25.9
Q ss_pred hccCCCccchhhhhhccc-CCCCCchhhhhHHHHhHhcCCChhhHHHHhhcC
Q 047767 20 CTSIVPLSSSLLLDSYCQ-PNPQLNIYSSNRTIDDFVKSGHLNSAKKLFDEM 70 (666)
Q Consensus 20 ~~~~~~~~~a~~~~~~~~-~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 70 (666)
.+..|+.+.+..+.+.-. .....+..-.+ .+...++.|+.+-+..+++.-
T Consensus 9 A~~~g~~~~v~~Ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~~~v~~Ll~~~ 59 (228)
T 2dzn_A 9 ACMENEFFKVQELLHSKPSLLLQKDQDGRI-PLHWSVSFQAHEITSFLLSKM 59 (228)
T ss_dssp HHHTTCHHHHHHHHHHCGGGTTCCCTTSCC-HHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHhCCHHHHHHHHhcCccccccCCCCCCC-HHHHHHHcCCHHHHHHHHhcc
Confidence 344556666665555443 22223333333 334445667777777777665
No 343
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=20.41 E-value=2.4e+02 Score=21.81 Aligned_cols=52 Identities=15% Similarity=0.138 Sum_probs=34.4
Q ss_pred CchhHHHHHHHhhcCC-ChhhHHHHHHHHHhCCCCCCcccHHHHHHHHHcCCC
Q 047767 74 DMVTYNLLISGCGKFR-HPKQALYLYDEMVSHGIKESASTFSSVLSVCSNAGF 125 (666)
Q Consensus 74 ~~~~~~~ll~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~ll~~~~~~~~ 125 (666)
....-..++..+...+ .+-.|.++++.+.+.+...+..|.-..|+.+...|-
T Consensus 16 ~T~qR~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 68 (136)
T 1mzb_A 16 VTLPRVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGL 68 (136)
T ss_dssp CCHHHHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTS
T ss_pred CCHHHHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCc
Confidence 3444556677777776 788999999999888766666665555555554443
No 344
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=20.35 E-value=2.7e+02 Score=22.16 Aligned_cols=24 Identities=25% Similarity=0.249 Sum_probs=11.6
Q ss_pred HHHHHhHhcCChhHHHHhhccCCC
Q 047767 150 PLVDLYMRMGPSVRALDLFDELPE 173 (666)
Q Consensus 150 ~ll~~~~~~g~~~~a~~~~~~~~~ 173 (666)
.++.-|...|+.++|.+.++++..
T Consensus 14 ~lL~EY~~~~D~~EA~~cl~EL~~ 37 (152)
T 2ion_A 14 MLLKEYLLSGDISEAEHCLKELEV 37 (152)
T ss_dssp HHHHHHHHHCCHHHHHHHHHHHTC
T ss_pred HHHHHHHhCCCHHHHHHHHHHhCC
Confidence 344444444555555555544443
Done!