Query 047768
Match_columns 1009
No_of_seqs 983 out of 6458
Neff 9.4
Searched_HMMs 29240
Date Mon Mar 25 04:31:22 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/047768.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/047768hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 1.6E-83 5.4E-88 798.9 33.0 597 20-627 6-746 (768)
2 3rgz_A Protein brassinosteroid 100.0 1.4E-65 4.8E-70 637.6 26.1 517 70-599 126-742 (768)
3 1ziw_A TOLL-like receptor 3; i 100.0 4.3E-60 1.5E-64 583.5 31.5 560 59-624 5-625 (680)
4 1ziw_A TOLL-like receptor 3; i 100.0 5.3E-58 1.8E-62 564.8 30.9 524 70-603 49-627 (680)
5 3t6q_A CD180 antigen; protein- 100.0 3.6E-58 1.2E-62 558.6 28.3 528 60-604 14-566 (606)
6 3j0a_A TOLL-like receptor 5; m 100.0 3.9E-58 1.3E-62 576.7 29.0 523 59-604 15-566 (844)
7 4ecn_A Leucine-rich repeat pro 100.0 1.1E-58 3.7E-63 569.8 23.0 491 22-573 265-863 (876)
8 4eco_A Uncharacterized protein 100.0 4.6E-59 1.6E-63 565.7 16.4 496 23-600 27-602 (636)
9 3vq2_A TLR4, TOLL-like recepto 100.0 5.1E-57 1.8E-61 548.4 24.8 514 70-604 32-564 (606)
10 3t6q_A CD180 antigen; protein- 100.0 4.1E-56 1.4E-60 540.5 30.4 531 74-623 16-562 (606)
11 3j0a_A TOLL-like receptor 5; m 100.0 2.5E-54 8.4E-59 542.2 31.6 522 75-623 9-562 (844)
12 3vq2_A TLR4, TOLL-like recepto 100.0 9.7E-55 3.3E-59 528.4 26.0 527 75-625 16-562 (606)
13 2z81_A CD282 antigen, TOLL-lik 100.0 1.2E-52 4.1E-57 503.8 23.5 492 59-603 5-515 (549)
14 2z63_A TOLL-like receptor 4, v 100.0 7.3E-52 2.5E-56 499.6 22.6 495 70-606 28-539 (570)
15 3omv_A RAF proto-oncogene seri 100.0 1.5E-51 5.1E-56 446.0 18.9 265 700-1006 35-304 (307)
16 4asz_A BDNF/NT-3 growth factor 100.0 1.9E-51 6.5E-56 445.7 17.6 266 701-1004 13-291 (299)
17 4aoj_A High affinity nerve gro 100.0 8.8E-51 3E-55 446.8 21.1 265 701-1003 41-320 (329)
18 4gt4_A Tyrosine-protein kinase 100.0 1.6E-50 5.3E-55 440.5 19.8 262 701-1000 26-304 (308)
19 2z63_A TOLL-like receptor 4, v 100.0 2E-49 6.9E-54 478.2 24.0 497 94-624 28-534 (570)
20 2z7x_B TOLL-like receptor 1, v 100.0 1.8E-50 6.1E-55 481.3 14.1 459 73-604 3-487 (520)
21 4fih_A Serine/threonine-protei 100.0 1.8E-49 6.1E-54 434.9 20.6 250 701-995 74-323 (346)
22 3hmm_A TGF-beta receptor type- 100.0 3.7E-49 1.3E-53 431.3 21.7 275 701-1003 3-298 (303)
23 4g3f_A NF-kappa-beta-inducing 100.0 4.5E-49 1.5E-53 430.5 21.1 262 700-1005 57-319 (336)
24 3fpq_A Serine/threonine-protei 100.0 8.3E-49 2.8E-53 421.5 21.9 251 704-995 29-282 (290)
25 4b9d_A Serine/threonine-protei 100.0 1.6E-49 5.5E-54 435.9 16.6 252 700-995 23-276 (350)
26 4g8a_A TOLL-like receptor 4; l 100.0 3.9E-49 1.3E-53 482.4 21.5 515 71-604 53-586 (635)
27 2z81_A CD282 antigen, TOLL-lik 100.0 2.1E-49 7.3E-54 475.6 16.6 480 59-578 13-514 (549)
28 4ase_A Vascular endothelial gr 100.0 5.1E-49 1.7E-53 436.1 15.9 278 692-1005 55-350 (353)
29 4fie_A Serine/threonine-protei 100.0 2.5E-48 8.4E-53 436.4 20.8 250 701-995 151-400 (423)
30 4ecn_A Leucine-rich repeat pro 100.0 9.2E-49 3.2E-53 481.7 16.8 436 94-598 323-840 (876)
31 4aw0_A HPDK1, 3-phosphoinositi 100.0 2.5E-48 8.5E-53 419.3 17.2 249 701-994 32-283 (311)
32 4eco_A Uncharacterized protein 100.0 1.6E-48 5.4E-53 473.2 16.6 476 94-623 81-602 (636)
33 3hyh_A Carbon catabolite-derep 100.0 1E-47 3.5E-52 409.2 18.0 247 700-995 12-262 (275)
34 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 1.2E-47 4.1E-52 460.7 16.7 458 73-604 34-516 (562)
35 2z7x_B TOLL-like receptor 1, v 100.0 2.9E-47 1E-51 453.5 18.0 462 97-623 3-483 (520)
36 4g8a_A TOLL-like receptor 4; l 100.0 2.5E-46 8.6E-51 457.5 24.7 524 81-623 42-582 (635)
37 4g31_A Eukaryotic translation 100.0 8.6E-47 2.9E-51 410.1 18.0 263 701-995 5-279 (299)
38 3ubd_A Ribosomal protein S6 ki 100.0 2.6E-47 8.8E-52 411.7 12.2 243 701-990 24-271 (304)
39 4b99_A Mitogen-activated prote 100.0 2.4E-44 8.1E-49 406.0 21.8 280 701-995 54-344 (398)
40 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 4.4E-44 1.5E-48 429.7 20.5 460 96-623 33-512 (562)
41 1jl5_A Outer protein YOPM; leu 100.0 4.2E-44 1.4E-48 415.2 19.1 410 86-603 3-416 (454)
42 4f9c_A Cell division cycle 7-r 100.0 2.5E-43 8.5E-48 393.6 19.6 208 699-925 19-252 (361)
43 1ogq_A PGIP-2, polygalacturona 100.0 1.2E-43 4E-48 392.0 14.5 293 22-324 2-302 (313)
44 3v47_A TOLL-like receptor 5B a 100.0 8.8E-43 3E-47 407.7 21.8 379 94-605 30-415 (455)
45 1jl5_A Outer protein YOPM; leu 100.0 9.9E-43 3.4E-47 403.7 18.4 420 70-604 11-435 (454)
46 3v5w_A G-protein coupled recep 100.0 2.7E-42 9.3E-47 403.8 22.0 250 700-995 188-449 (689)
47 3v47_A TOLL-like receptor 5B a 100.0 1.6E-42 5.4E-47 405.6 19.2 391 52-481 3-412 (455)
48 3uto_A Twitchin; kinase, muscl 100.0 2.5E-42 8.7E-47 409.2 18.9 253 700-995 156-410 (573)
49 3uim_A Brassinosteroid insensi 100.0 4.3E-41 1.5E-45 374.9 20.4 288 687-999 16-308 (326)
50 2qkw_B Protein kinase; three-h 100.0 4.6E-41 1.6E-45 373.6 20.2 282 695-1003 33-316 (321)
51 3s95_A LIMK-1, LIM domain kina 100.0 5.5E-41 1.9E-45 371.1 20.7 268 700-1006 9-286 (310)
52 3fxz_A Serine/threonine-protei 100.0 1.3E-40 4.6E-45 365.0 23.0 251 700-995 19-269 (297)
53 3soc_A Activin receptor type-2 100.0 9.9E-41 3.4E-45 370.8 19.5 282 700-1003 23-319 (322)
54 3q4u_A Activin receptor type-1 100.0 3.5E-40 1.2E-44 363.1 22.3 268 700-1000 7-300 (301)
55 3kul_A Ephrin type-A receptor 100.0 1.3E-40 4.5E-45 369.9 16.6 266 700-1007 48-318 (325)
56 3ugc_A Tyrosine-protein kinase 100.0 1.4E-40 4.7E-45 365.2 16.4 274 700-1005 9-294 (295)
57 3cbl_A C-FES, proto-oncogene t 100.0 6.4E-41 2.2E-45 380.5 13.5 263 699-1004 112-376 (377)
58 3bz5_A Internalin-J, INLJ; leu 100.0 8.9E-40 3E-44 379.2 23.3 363 83-604 31-393 (457)
59 2psq_A Fibroblast growth facto 100.0 6.2E-40 2.1E-44 371.0 21.0 268 700-1005 80-367 (370)
60 2c30_A Serine/threonine-protei 100.0 1.4E-39 4.8E-44 361.0 22.8 262 689-995 23-294 (321)
61 3lb7_A RAF proto-oncogene seri 100.0 7.8E-40 2.7E-44 360.6 19.8 265 700-1006 35-304 (307)
62 3fe3_A MAP/microtubule affinit 100.0 5.9E-40 2E-44 364.2 18.1 249 699-995 13-264 (328)
63 2qol_A Ephrin receptor; recept 100.0 2.6E-40 9E-45 374.2 14.9 263 700-1004 44-311 (373)
64 3op5_A Serine/threonine-protei 100.0 7.2E-40 2.5E-44 370.5 18.3 281 699-1004 33-331 (364)
65 2nru_A Interleukin-1 receptor- 100.0 9E-39 3.1E-43 352.9 26.7 283 688-1002 12-306 (307)
66 3zgw_A Maternal embryonic leuc 100.0 7E-40 2.4E-44 365.5 17.8 252 699-996 8-261 (347)
67 3p86_A Serine/threonine-protei 100.0 8.3E-40 2.9E-44 360.6 17.8 263 698-1004 34-300 (309)
68 3g2f_A Bone morphogenetic prot 100.0 1.2E-39 4.1E-44 364.9 18.8 293 700-1008 12-324 (336)
69 2izr_A Casein kinase I isoform 100.0 3.2E-39 1.1E-43 360.2 21.9 270 700-1004 8-283 (330)
70 4eqm_A Protein kinase; transfe 100.0 2.2E-39 7.5E-44 354.9 20.1 263 700-1003 10-276 (294)
71 2yab_A Death-associated protei 100.0 3.9E-39 1.3E-43 361.8 21.5 252 700-995 11-272 (361)
72 4hcu_A Tyrosine-protein kinase 100.0 2.1E-39 7.1E-44 350.6 18.1 258 700-1003 9-267 (269)
73 1csn_A Casein kinase-1; phosph 100.0 7.3E-39 2.5E-43 352.0 22.7 270 700-1005 9-286 (298)
74 1o6l_A RAC-beta serine/threoni 100.0 4.7E-39 1.6E-43 357.8 21.4 249 700-995 4-260 (337)
75 3poz_A Epidermal growth factor 100.0 1E-39 3.6E-44 363.4 16.1 260 700-1003 14-279 (327)
76 4euu_A Serine/threonine-protei 100.0 1.1E-38 3.8E-43 354.0 24.3 282 700-999 8-306 (319)
77 1tki_A Titin; serine kinase, m 100.0 3.6E-39 1.2E-43 357.4 19.9 253 700-996 4-258 (321)
78 3tki_A Serine/threonine-protei 100.0 2.1E-39 7.3E-44 359.7 17.7 254 700-995 6-261 (323)
79 3h4j_B AMPK kdaid, SNF1-like p 100.0 3.6E-39 1.2E-43 358.3 18.6 247 700-995 8-258 (336)
80 3l9p_A Anaplastic lymphoma kin 100.0 1.3E-39 4.3E-44 368.2 15.2 267 700-1004 70-347 (367)
81 2y0a_A Death-associated protei 100.0 1E-38 3.5E-43 354.9 21.9 251 701-995 11-271 (326)
82 1k9a_A Carboxyl-terminal SRC k 100.0 6.1E-39 2.1E-43 372.6 20.7 254 700-1003 192-446 (450)
83 3g33_A Cell division protein k 100.0 5.1E-39 1.7E-43 354.9 18.9 277 699-995 7-296 (308)
84 3sxs_A Cytoplasmic tyrosine-pr 100.0 3.1E-39 1.1E-43 349.1 16.6 258 700-1003 7-265 (268)
85 1opk_A P150, C-ABL, proto-onco 100.0 1.7E-39 5.8E-44 381.5 15.7 259 700-1002 219-478 (495)
86 4aw2_A Serine/threonine-protei 100.0 1.8E-39 6.1E-44 372.6 15.5 262 694-995 67-338 (437)
87 3soa_A Calcium/calmodulin-depe 100.0 1.5E-38 5.1E-43 366.5 23.0 253 700-995 10-267 (444)
88 4f0f_A Serine/threonine-protei 100.0 8.4E-39 2.9E-43 349.4 19.5 253 700-999 18-286 (287)
89 2eva_A TAK1 kinase - TAB1 chim 100.0 1.3E-38 4.6E-43 351.0 21.2 260 700-1006 7-267 (307)
90 3vhe_A Vascular endothelial gr 100.0 3.9E-39 1.3E-43 364.3 17.3 278 691-1004 12-357 (359)
91 4hgt_A Casein kinase I isoform 100.0 2.4E-38 8.2E-43 347.5 23.0 271 699-1004 7-282 (296)
92 3gen_A Tyrosine-protein kinase 100.0 7.2E-39 2.4E-43 349.2 18.7 259 699-1003 22-281 (283)
93 4dc2_A Protein kinase C IOTA t 100.0 8.8E-39 3E-43 361.9 20.0 249 700-990 51-307 (396)
94 4fr4_A YANK1, serine/threonine 100.0 2.8E-38 9.7E-43 356.6 23.9 250 700-994 14-270 (384)
95 1luf_A Muscle-specific tyrosin 100.0 4.4E-39 1.5E-43 361.5 17.3 270 699-1006 45-339 (343)
96 3o0g_A Cell division protein k 100.0 9.3E-39 3.2E-43 350.0 19.4 272 701-995 2-282 (292)
97 3uzp_A CKI-delta, CKID, casein 100.0 2.9E-38 1E-42 346.8 23.3 271 700-1005 8-283 (296)
98 3mdy_A Bone morphogenetic prot 100.0 3.7E-38 1.3E-42 353.0 24.5 277 698-1004 34-333 (337)
99 2pmi_A Negative RE, cyclin-dep 100.0 2.2E-38 7.4E-43 351.1 22.2 278 700-995 4-293 (317)
100 3og7_A AKAP9-BRAF fusion prote 100.0 3E-39 1E-43 353.2 14.8 262 699-1002 22-288 (289)
101 2bdw_A Hypothetical protein K1 100.0 1.1E-38 3.8E-43 359.3 19.7 253 700-996 28-285 (362)
102 3tt0_A Basic fibroblast growth 100.0 2.1E-38 7.1E-43 360.7 22.1 270 700-1007 68-357 (382)
103 1mp8_A Focal adhesion kinase 1 100.0 6E-39 2.1E-43 349.3 16.9 261 700-1005 14-279 (281)
104 3c0i_A Peripheral plasma membr 100.0 8.7E-39 3E-43 359.2 18.7 255 701-995 24-286 (351)
105 2w4o_A Calcium/calmodulin-depe 100.0 1.7E-38 5.8E-43 356.3 20.3 251 700-995 52-305 (349)
106 3qup_A Tyrosine-protein kinase 100.0 6.4E-39 2.2E-43 356.8 16.7 272 699-1003 21-299 (323)
107 3kex_A Receptor tyrosine-prote 100.0 1.2E-38 4E-43 354.7 18.8 260 700-1003 12-277 (325)
108 3txo_A PKC-L, NPKC-ETA, protei 100.0 4.7E-39 1.6E-43 360.3 15.6 245 699-990 21-269 (353)
109 3brb_A Proto-oncogene tyrosine 100.0 1.5E-38 5.2E-43 352.1 19.5 277 697-1006 30-312 (313)
110 1kob_A Twitchin; kinase, intra 100.0 1.3E-38 4.4E-43 360.8 19.3 253 700-995 50-304 (387)
111 3kfa_A Tyrosine-protein kinase 100.0 5.1E-39 1.7E-43 351.4 15.5 263 698-1004 10-273 (288)
112 1fot_A TPK1 delta, CAMP-depend 100.0 2.1E-38 7.2E-43 350.1 20.5 246 700-995 5-258 (318)
113 3niz_A Rhodanese family protei 100.0 4.6E-38 1.6E-42 347.3 23.1 269 700-995 20-300 (311)
114 1qcf_A Haematopoetic cell kina 100.0 2.5E-39 8.6E-44 376.5 13.7 259 699-1003 186-445 (454)
115 3c1x_A Hepatocyte growth facto 100.0 5.6E-39 1.9E-43 362.8 16.0 268 701-1008 89-361 (373)
116 3qd2_B Eukaryotic translation 100.0 2.2E-38 7.5E-43 354.0 20.3 264 700-995 5-325 (332)
117 2zv2_A Calcium/calmodulin-depe 100.0 3E-38 1E-42 347.0 20.5 252 700-995 12-292 (298)
118 3bz5_A Internalin-J, INLJ; leu 100.0 1.8E-38 6E-43 368.3 19.5 355 70-583 42-396 (457)
119 3lxl_A Tyrosine-protein kinase 100.0 2.2E-39 7.4E-44 361.1 11.4 278 700-1005 22-306 (327)
120 3v8s_A RHO-associated protein 100.0 1.1E-38 3.8E-43 363.2 17.5 259 694-995 62-329 (410)
121 1rjb_A FL cytokine receptor; k 100.0 1.2E-38 4.1E-43 358.0 17.4 273 699-1008 43-340 (344)
122 3a8x_A Protein kinase C IOTA t 100.0 2.8E-38 9.5E-43 353.4 20.0 249 700-990 8-264 (345)
123 1xjd_A Protein kinase C, theta 100.0 1.1E-38 3.9E-43 355.6 16.8 251 697-994 13-268 (345)
124 2x4f_A Myosin light chain kina 100.0 1.5E-38 5.1E-43 359.6 17.7 247 706-995 94-342 (373)
125 1o6v_A Internalin A; bacterial 100.0 6.7E-38 2.3E-42 366.6 23.8 345 168-600 46-390 (466)
126 3gni_B Strad alpha; kinase fol 100.0 2.5E-38 8.5E-43 361.5 19.6 280 699-996 23-334 (389)
127 3ttj_A Mitogen-activated prote 100.0 2.1E-38 7.3E-43 368.4 19.3 274 700-995 61-355 (464)
128 3ork_A Serine/threonine protei 100.0 5.1E-39 1.7E-43 355.3 13.1 265 700-1000 11-279 (311)
129 3gxj_A TGF-beta receptor type- 100.0 4.3E-40 1.5E-44 362.8 4.5 272 700-1004 2-299 (303)
130 3dtc_A Mitogen-activated prote 100.0 1.3E-38 4.4E-43 344.9 16.0 254 700-1000 6-271 (271)
131 4eut_A Serine/threonine-protei 100.0 3.2E-38 1.1E-42 360.8 20.0 286 700-1003 8-310 (396)
132 2ivs_A Proto-oncogene tyrosine 100.0 1.6E-38 5.6E-43 352.0 17.0 267 699-1003 21-312 (314)
133 1o6v_A Internalin A; bacterial 100.0 6.8E-38 2.3E-42 366.6 23.1 279 93-454 45-323 (466)
134 3lzb_A Epidermal growth factor 100.0 1.2E-38 4E-43 354.6 15.6 260 700-1003 14-279 (327)
135 1t46_A HOMO sapiens V-KIT hard 100.0 1.5E-38 5E-43 352.3 16.3 271 699-1006 21-311 (313)
136 3uc3_A Serine/threonine-protei 100.0 4.1E-38 1.4E-42 354.8 20.1 254 700-996 19-275 (361)
137 1ob3_A PFPK5, cell division co 100.0 2.8E-38 9.5E-43 345.4 18.2 268 701-995 2-280 (288)
138 1b6c_B TGF-B superfamily recep 100.0 1.3E-37 4.5E-42 349.3 24.1 276 696-1004 37-338 (342)
139 3f3z_A Calcium/calmodulin-depe 100.0 7.4E-38 2.5E-42 340.0 21.3 251 700-995 8-261 (277)
140 2id5_A Lingo-1, leucine rich r 100.0 1.6E-38 5.4E-43 373.8 17.3 348 245-628 16-363 (477)
141 1rdq_E PKA C-alpha, CAMP-depen 100.0 3.8E-38 1.3E-42 352.7 19.5 246 700-995 40-293 (350)
142 3lxp_A Non-receptor tyrosine-p 100.0 4.7E-39 1.6E-43 356.7 12.0 278 702-1007 32-315 (318)
143 2v62_A Serine/threonine-protei 100.0 1.9E-38 6.4E-43 356.1 16.8 273 700-1001 36-327 (345)
144 3dls_A PAS domain-containing s 100.0 2.7E-38 9.2E-43 352.6 17.7 243 700-996 23-275 (335)
145 3llt_A Serine/threonine kinase 100.0 1.1E-38 3.8E-43 360.6 14.8 214 685-923 19-262 (360)
146 3p1a_A MYT1 kinase, membrane-a 100.0 4E-38 1.4E-42 348.0 18.9 245 701-995 57-304 (311)
147 3f66_A Hepatocyte growth facto 100.0 4.3E-38 1.5E-42 345.9 18.9 268 700-1007 24-296 (298)
148 4e5w_A Tyrosine-protein kinase 100.0 2.7E-38 9.1E-43 348.3 17.1 270 700-1001 20-301 (302)
149 2buj_A Serine/threonine-protei 100.0 1.8E-38 6E-43 352.3 15.7 280 700-1007 28-311 (317)
150 1mqb_A Ephrin type-A receptor 100.0 3.8E-38 1.3E-42 351.6 18.4 263 701-1005 44-312 (333)
151 3t9t_A Tyrosine-protein kinase 100.0 2.8E-38 9.7E-43 341.3 16.8 258 700-1003 7-265 (267)
152 1fmk_A C-SRC, P60-SRC, tyrosin 100.0 9.8E-39 3.3E-43 371.1 14.1 259 699-1003 182-441 (452)
153 2vd5_A DMPK protein; serine/th 100.0 4.8E-38 1.6E-42 358.2 19.5 261 694-995 54-327 (412)
154 2a19_B Interferon-induced, dou 100.0 5.4E-38 1.8E-42 342.5 19.0 258 700-1006 10-278 (284)
155 3cc6_A Protein tyrosine kinase 100.0 7.1E-38 2.4E-42 340.9 19.9 261 699-1004 10-275 (281)
156 2ac3_A MAP kinase-interacting 100.0 7.8E-38 2.7E-42 346.9 20.5 272 701-995 12-295 (316)
157 2i1m_A Macrophage colony-stimu 100.0 8.7E-39 3E-43 357.4 12.8 276 696-1008 41-332 (333)
158 1nxk_A MAP kinase-activated pr 100.0 1.1E-37 3.7E-42 356.0 22.2 255 701-996 61-322 (400)
159 2ozo_A Tyrosine-protein kinase 100.0 4E-38 1.4E-42 378.5 19.5 256 708-1006 343-602 (613)
160 2i0e_A Protein kinase C-beta I 100.0 4.6E-38 1.6E-42 352.0 18.6 245 699-990 18-266 (353)
161 2a2a_A Death-associated protei 100.0 1.1E-37 3.6E-42 346.4 21.4 252 700-995 11-272 (321)
162 4fvq_A Tyrosine-protein kinase 100.0 1.5E-38 5.2E-43 347.8 14.2 253 700-1002 7-275 (289)
163 3kk8_A Calcium/calmodulin depe 100.0 1.6E-37 5.6E-42 338.6 22.3 253 700-996 5-262 (284)
164 1t4h_A Serine/threonine-protei 100.0 1.3E-37 4.5E-42 340.5 21.4 252 701-995 26-282 (290)
165 2y94_A 5'-AMP-activated protei 100.0 6.3E-38 2.2E-42 363.4 19.6 248 700-995 15-266 (476)
166 3rp9_A Mitogen-activated prote 100.0 1.8E-37 6E-42 362.3 23.5 207 700-916 52-280 (458)
167 3kn6_A Ribosomal protein S6 ki 100.0 3.3E-38 1.1E-42 350.4 16.6 249 706-995 16-270 (325)
168 2w1i_A JAK2; chromosomal rearr 100.0 4.5E-38 1.5E-42 350.3 17.4 274 700-1005 40-325 (326)
169 1qpc_A LCK kinase; alpha beta 100.0 4.2E-38 1.4E-42 342.4 16.6 263 699-1007 11-274 (279)
170 3cok_A Serine/threonine-protei 100.0 9.1E-38 3.1E-42 339.5 19.2 250 700-995 10-262 (278)
171 1xbb_A Tyrosine-protein kinase 100.0 1.7E-38 5.7E-43 347.7 13.5 264 699-1006 14-283 (291)
172 1u59_A Tyrosine-protein kinase 100.0 6E-38 2.1E-42 342.6 17.8 263 701-1006 9-276 (287)
173 3pls_A Macrophage-stimulating 100.0 1E-37 3.5E-42 342.8 19.8 268 702-1008 22-293 (298)
174 2h34_A Serine/threonine-protei 100.0 1.2E-37 3.9E-42 344.0 20.1 263 699-1004 32-298 (309)
175 3kmu_A ILK, integrin-linked ki 100.0 8.4E-38 2.9E-42 338.4 18.6 255 700-1002 9-270 (271)
176 2eue_A Carbon catabolite derep 100.0 5E-38 1.7E-42 340.9 16.8 247 700-995 12-262 (275)
177 3i6u_A CDS1, serine/threonine- 100.0 9E-38 3.1E-42 359.3 19.8 253 699-995 133-399 (419)
178 3sv0_A Casein kinase I-like; t 100.0 2E-37 7E-42 359.8 22.8 269 700-1003 6-279 (483)
179 2wqm_A Serine/threonine-protei 100.0 9.4E-38 3.2E-42 345.2 19.0 267 700-1005 31-300 (310)
180 2pvf_A Fibroblast growth facto 100.0 1E-37 3.6E-42 348.6 19.4 269 699-1005 33-321 (334)
181 1u5q_A Serine/threonine protei 100.0 4.7E-38 1.6E-42 352.2 16.6 247 701-996 54-306 (348)
182 4fl3_A Tyrosine-protein kinase 100.0 4.4E-38 1.5E-42 378.9 17.5 255 707-1005 375-634 (635)
183 3fdn_A Serine/threonine-protei 100.0 7.1E-38 2.4E-42 340.6 17.5 249 699-996 7-258 (279)
184 2yex_A Serine/threonine-protei 100.0 1.7E-37 5.7E-42 337.1 20.2 254 700-995 6-261 (276)
185 3gbz_A Kinase, CMGC CDK; ssgci 100.0 4.8E-38 1.6E-42 350.3 15.8 275 697-995 30-318 (329)
186 2r5t_A Serine/threonine-protei 100.0 4.5E-38 1.5E-42 354.5 15.7 249 700-995 37-289 (373)
187 3hko_A Calcium/calmodulin-depe 100.0 8.9E-38 3E-42 351.1 17.9 267 696-995 21-330 (345)
188 2jii_A Serine/threonine-protei 100.0 6.5E-38 2.2E-42 352.8 16.8 274 700-1005 41-339 (352)
189 4agu_A Cyclin-dependent kinase 100.0 7.2E-38 2.5E-42 346.3 16.8 271 701-995 3-284 (311)
190 3a62_A Ribosomal protein S6 ki 100.0 1E-37 3.4E-42 347.0 17.9 249 700-995 16-276 (327)
191 1p4o_A Insulin-like growth fac 100.0 2.6E-38 8.8E-43 351.8 13.0 274 692-1003 16-300 (322)
192 3oz6_A Mitogen-activated prote 100.0 8.8E-38 3E-42 356.6 17.7 211 699-923 7-234 (388)
193 3is5_A Calcium-dependent prote 100.0 2.1E-37 7E-42 337.8 19.9 253 701-995 22-278 (285)
194 3bhy_A Death-associated protei 100.0 3.5E-37 1.2E-41 335.8 21.6 259 701-1003 5-275 (283)
195 1byg_A CSK, protein (C-termina 100.0 6.1E-38 2.1E-42 340.9 15.5 255 700-1004 20-275 (278)
196 3nsz_A CK II alpha, casein kin 100.0 1.5E-37 5E-42 347.0 18.9 267 700-995 35-319 (330)
197 3dbq_A Dual specificity protei 100.0 8.9E-38 3E-42 350.3 17.0 252 700-996 8-274 (343)
198 3ll6_A Cyclin G-associated kin 100.0 1.1E-37 3.8E-42 349.1 17.8 271 700-1004 27-310 (337)
199 1fvr_A Tyrosine-protein kinase 100.0 1.1E-37 3.7E-42 347.4 17.5 263 701-1004 25-302 (327)
200 4ejn_A RAC-alpha serine/threon 100.0 4.2E-38 1.4E-42 365.8 14.7 249 700-995 147-404 (446)
201 2acx_A G protein-coupled recep 100.0 3E-37 1E-41 361.9 21.9 254 700-995 183-444 (576)
202 3mtl_A Cell division protein k 100.0 4.8E-38 1.6E-42 349.4 14.4 271 701-995 2-281 (324)
203 2qr7_A Ribosomal protein S6 ki 100.0 7.4E-38 2.5E-42 349.4 15.9 253 700-996 21-278 (342)
204 2jam_A Calcium/calmodulin-depe 100.0 2.9E-37 1E-41 340.2 20.4 251 700-995 8-261 (304)
205 3mi9_A Cell division protein k 100.0 3.6E-37 1.2E-41 346.8 21.1 282 700-995 16-311 (351)
206 2xir_A Vascular endothelial gr 100.0 9.2E-38 3.1E-42 346.4 16.0 278 693-1006 19-314 (316)
207 3n9x_A Phosphotransferase; mal 100.0 3.5E-37 1.2E-41 356.1 21.4 212 700-921 25-253 (432)
208 3e7e_A HBUB1, BUB1A, mitotic c 100.0 3.8E-37 1.3E-41 348.4 21.0 262 699-1007 63-344 (365)
209 2clq_A Mitogen-activated prote 100.0 5.3E-37 1.8E-41 336.6 21.4 253 702-995 23-278 (295)
210 2vgo_A Serine/threonine-protei 100.0 4.3E-37 1.5E-41 335.3 20.1 247 700-995 13-262 (284)
211 2zmd_A Dual specificity protei 100.0 2.1E-37 7.1E-42 352.6 18.3 251 701-996 56-321 (390)
212 2yfx_A Tyrosine-protein kinase 100.0 1.2E-37 4.2E-42 346.9 15.8 267 700-1004 29-306 (327)
213 2h8h_A Proto-oncogene tyrosine 100.0 3.8E-38 1.3E-42 373.4 12.4 258 699-1002 265-523 (535)
214 3a7i_A MST3 kinase, serine/thr 100.0 8E-37 2.7E-41 336.6 21.9 251 700-997 21-272 (303)
215 1ua2_A CAK, cell division prot 100.0 3.5E-37 1.2E-41 345.9 19.0 276 698-996 7-292 (346)
216 3qyz_A Mitogen-activated prote 100.0 4.7E-37 1.6E-41 347.4 20.0 275 700-995 26-313 (364)
217 2rku_A Serine/threonine-protei 100.0 2.9E-37 9.9E-42 338.5 17.5 250 700-996 14-266 (294)
218 2y7j_A Phosphorylase B kinase 100.0 1.2E-36 4.1E-41 343.6 22.8 256 696-995 89-359 (365)
219 2w5a_A Serine/threonine-protei 100.0 1.5E-37 5E-42 338.1 14.6 258 700-997 5-269 (279)
220 3byv_A Rhoptry kinase; malaria 100.0 4.9E-38 1.7E-42 357.2 11.2 258 700-1002 72-368 (377)
221 4aaa_A Cyclin-dependent kinase 100.0 2.4E-37 8.4E-42 345.1 16.6 273 700-996 24-307 (331)
222 1cm8_A Phosphorylated MAP kina 100.0 4.9E-37 1.7E-41 346.8 19.2 270 700-995 24-307 (367)
223 2xrw_A Mitogen-activated prote 100.0 3.2E-37 1.1E-41 349.4 17.8 275 700-996 24-319 (371)
224 3oja_B Anopheles plasmodium-re 100.0 4.1E-37 1.4E-41 371.0 19.8 117 506-628 271-387 (597)
225 2owb_A Serine/threonine-protei 100.0 3.1E-37 1.1E-41 344.7 16.8 250 700-996 40-292 (335)
226 2h6d_A 5'-AMP-activated protei 100.0 6.2E-37 2.1E-41 332.6 18.3 249 700-996 10-262 (276)
227 3mwu_A Calmodulin-domain prote 100.0 1.1E-36 3.6E-41 358.1 21.7 251 700-996 21-277 (486)
228 3c4z_A Rhodopsin kinase; Ser/T 100.0 9E-37 3.1E-41 357.4 20.9 252 700-990 184-438 (543)
229 3eqc_A Dual specificity mitoge 100.0 4.6E-37 1.6E-41 347.2 17.8 201 700-923 32-233 (360)
230 2j7t_A Serine/threonine-protei 100.0 3.9E-37 1.3E-41 338.9 16.7 253 700-995 18-275 (302)
231 2ycf_A Serine/threonine-protei 100.0 6.3E-37 2.2E-41 340.4 18.5 252 700-995 9-274 (322)
232 3com_A Serine/threonine-protei 100.0 1.3E-36 4.6E-41 336.6 21.1 252 699-995 27-278 (314)
233 3lij_A Calcium/calmodulin depe 100.0 1.1E-36 3.7E-41 358.5 21.4 252 700-996 36-292 (494)
234 3lm5_A Serine/threonine-protei 100.0 5E-37 1.7E-41 341.7 17.5 261 693-995 20-287 (327)
235 3pg1_A Mitogen-activated prote 100.0 1.1E-36 3.8E-41 344.4 20.5 280 693-995 14-316 (362)
236 1u46_A ACK-1, activated CDC42 100.0 1.7E-37 5.8E-42 339.9 13.1 265 700-1006 17-288 (291)
237 1blx_A Cyclin-dependent kinase 100.0 1.2E-36 3.9E-41 339.1 19.5 279 699-995 9-296 (326)
238 2id5_A Lingo-1, leucine rich r 100.0 6.6E-37 2.3E-41 359.9 18.5 330 52-454 2-334 (477)
239 3eb0_A Putative uncharacterize 100.0 6.2E-37 2.1E-41 348.8 17.7 285 697-1002 3-330 (383)
240 2r3i_A Cell division protein k 100.0 1.2E-36 4E-41 334.6 18.9 273 701-995 3-283 (299)
241 2fst_X Mitogen-activated prote 100.0 4.6E-37 1.6E-41 346.5 15.5 269 700-995 28-311 (367)
242 3q5i_A Protein kinase; CDPK, m 100.0 2E-36 7E-41 357.2 21.7 252 700-996 35-302 (504)
243 3nyv_A Calmodulin-domain prote 100.0 7.3E-37 2.5E-41 359.7 17.8 252 700-996 25-282 (484)
244 2vwi_A Serine/threonine-protei 100.0 2.2E-37 7.6E-42 341.1 12.4 271 698-995 12-287 (303)
245 3q60_A ROP5B; pseudokinase, tr 100.0 2.1E-37 7.3E-42 351.2 12.6 259 700-995 61-352 (371)
246 3kvw_A DYRK2, dual specificity 100.0 9.5E-37 3.2E-41 351.6 17.9 199 700-923 96-302 (429)
247 1phk_A Phosphorylase kinase; g 100.0 2.2E-36 7.4E-41 332.3 19.6 253 699-995 15-283 (298)
248 2b9h_A MAP kinase FUS3, mitoge 100.0 1.1E-36 3.7E-41 343.4 17.6 283 700-995 10-305 (353)
249 3fme_A Dual specificity mitoge 100.0 9.6E-37 3.3E-41 333.7 16.7 255 700-995 6-266 (290)
250 2i6l_A Mitogen-activated prote 100.0 4.3E-37 1.5E-41 341.6 14.1 278 700-995 10-305 (320)
251 3e3p_A Protein kinase, putativ 100.0 2.9E-36 1E-40 340.9 21.1 285 694-995 16-314 (360)
252 1vzo_A Ribosomal protein S6 ki 100.0 1.1E-36 3.8E-41 342.6 17.4 255 700-996 53-322 (355)
253 1x8b_A WEE1HU, WEE1-like prote 100.0 1.7E-36 5.9E-41 331.3 18.4 247 700-995 10-279 (289)
254 3pfq_A PKC-B, PKC-beta, protei 100.0 2.3E-36 8E-41 366.4 20.9 245 699-990 339-587 (674)
255 1wak_A Serine/threonine-protei 100.0 3.3E-36 1.1E-40 345.3 21.1 276 700-995 36-391 (397)
256 2x7f_A TRAF2 and NCK-interacti 100.0 1.4E-36 4.7E-41 338.5 17.3 262 695-995 18-286 (326)
257 1j1b_A Glycogen synthase kinas 100.0 1.4E-36 4.6E-41 349.5 17.5 274 701-995 54-336 (420)
258 3an0_A Dual specificity mitoge 100.0 1.3E-36 4.6E-41 340.6 16.8 255 700-995 50-310 (340)
259 3o6n_A APL1; leucine-rich repe 100.0 2.2E-36 7.5E-41 345.6 18.2 350 45-477 3-352 (390)
260 2vx3_A Dual specificity tyrosi 100.0 4.9E-36 1.7E-40 341.3 20.5 203 698-923 51-261 (382)
261 2j0j_A Focal adhesion kinase 1 100.0 2.5E-36 8.7E-41 364.9 19.0 261 699-1004 388-653 (656)
262 2wtk_C Serine/threonine-protei 100.0 5E-36 1.7E-40 330.6 19.7 255 700-996 4-264 (305)
263 4exu_A Mitogen-activated prote 100.0 3.4E-36 1.2E-40 341.0 18.3 272 700-995 41-323 (371)
264 2pml_X PFPK7, Ser/Thr protein 100.0 3.2E-36 1.1E-40 338.8 17.3 265 700-995 30-322 (348)
265 3fhr_A MAP kinase-activated pr 100.0 5.2E-36 1.8E-40 334.6 18.5 257 700-995 27-287 (336)
266 1z57_A Dual specificity protei 100.0 9.6E-36 3.3E-40 333.6 19.9 270 700-995 13-328 (339)
267 2wei_A Calmodulin-domain prote 100.0 1.2E-35 4E-40 324.4 19.8 251 700-995 21-276 (287)
268 3o6n_A APL1; leucine-rich repe 100.0 3.3E-36 1.1E-40 344.1 16.2 335 167-625 44-378 (390)
269 4e7w_A Glycogen synthase kinas 100.0 3.7E-36 1.3E-40 343.1 16.4 273 700-995 39-321 (394)
270 1zy4_A Serine/threonine-protei 100.0 4.7E-36 1.6E-40 330.3 16.7 264 700-995 5-283 (303)
271 3rgf_A Cyclin-dependent kinase 100.0 5.4E-36 1.9E-40 343.8 17.5 209 701-923 20-239 (405)
272 3a99_A Proto-oncogene serine/t 100.0 2.6E-36 8.8E-41 334.9 14.2 242 699-995 41-293 (320)
273 2y4i_B KSR2, HKSR2, kinase sup 100.0 3.5E-36 1.2E-40 334.1 14.9 264 697-1003 29-303 (319)
274 1q8y_A SR protein kinase; tran 100.0 1.1E-35 3.8E-40 337.9 19.0 276 700-995 18-333 (373)
275 3cek_A Dual specificity protei 100.0 1.4E-35 4.7E-40 328.2 17.5 254 698-996 25-293 (313)
276 3aln_A Dual specificity mitoge 100.0 8.2E-36 2.8E-40 332.3 15.7 259 700-995 21-285 (327)
277 2iwi_A Serine/threonine-protei 100.0 6.7E-36 2.3E-40 330.7 13.3 244 697-995 27-283 (312)
278 3coi_A Mitogen-activated prote 100.0 4.5E-35 1.5E-39 329.9 20.1 269 700-995 23-305 (353)
279 2eu9_A Dual specificity protei 100.0 3.4E-35 1.2E-39 331.4 19.1 270 700-995 18-333 (355)
280 3qa8_A MGC80376 protein; kinas 100.0 1E-35 3.5E-40 351.7 12.8 273 700-993 13-295 (676)
281 2dyl_A Dual specificity mitoge 100.0 3.5E-35 1.2E-39 325.9 16.3 253 700-996 24-284 (318)
282 1ogq_A PGIP-2, polygalacturona 100.0 1.7E-35 5.8E-40 326.6 13.4 256 370-627 52-310 (313)
283 2rio_A Serine/threonine-protei 100.0 9.4E-35 3.2E-39 335.7 17.6 257 702-995 16-295 (434)
284 4fcg_A Uncharacterized protein 100.0 1.5E-35 5.2E-40 328.9 10.5 274 22-302 23-314 (328)
285 3p23_A Serine/threonine-protei 100.0 1.5E-34 5.2E-39 332.7 17.2 251 700-995 23-283 (432)
286 3uqc_A Probable conserved tran 100.0 6.3E-34 2.2E-38 309.5 17.0 235 701-1005 31-268 (286)
287 3m2w_A MAP kinase-activated pr 100.0 1.3E-33 4.6E-38 309.9 19.2 236 701-996 17-257 (299)
288 2pzi_A Probable serine/threoni 100.0 8.5E-34 2.9E-38 346.8 17.8 247 701-1003 80-329 (681)
289 4fmz_A Internalin; leucine ric 100.0 1.5E-33 5.1E-38 316.8 17.3 306 91-453 41-346 (347)
290 3dzo_A Rhoptry kinase domain; 100.0 9E-34 3.1E-38 325.3 15.8 251 700-995 77-363 (413)
291 3oja_B Anopheles plasmodium-re 100.0 7.1E-34 2.4E-38 342.8 15.0 312 92-455 49-360 (597)
292 4fmz_A Internalin; leucine ric 100.0 1.2E-32 4.2E-37 309.4 22.4 305 238-598 42-346 (347)
293 2ft3_A Biglycan; proteoglycan, 100.0 1.2E-32 4.1E-37 307.1 21.4 200 73-309 36-237 (332)
294 2ft3_A Biglycan; proteoglycan, 100.0 5.9E-32 2E-36 301.5 23.9 288 241-596 34-331 (332)
295 2vuw_A Serine/threonine-protei 100.0 4.4E-33 1.5E-37 311.3 12.1 247 700-994 19-329 (336)
296 1xku_A Decorin; proteoglycan, 100.0 4E-32 1.4E-36 302.7 18.9 216 45-309 18-236 (330)
297 1xku_A Decorin; proteoglycan, 100.0 1E-31 3.5E-36 299.4 20.9 288 242-596 33-330 (330)
298 1z7x_W Ribonuclease inhibitor; 100.0 6E-36 2.1E-40 350.4 -19.6 380 168-598 3-440 (461)
299 1z7x_W Ribonuclease inhibitor; 100.0 1.3E-35 4.4E-40 347.6 -19.0 358 71-455 4-413 (461)
300 2z66_A Variable lymphocyte rec 100.0 4.6E-31 1.6E-35 290.8 7.3 254 53-325 1-260 (306)
301 2z80_A TOLL-like receptor 2, v 100.0 2.1E-30 7.2E-35 291.6 11.5 277 58-357 30-315 (353)
302 3ogk_B Coronatine-insensitive 100.0 1.9E-32 6.6E-37 331.5 -10.9 455 55-594 39-547 (592)
303 2z80_A TOLL-like receptor 2, v 100.0 9.8E-30 3.3E-34 286.2 8.4 282 114-431 27-316 (353)
304 2z66_A Variable lymphocyte rec 100.0 8.5E-29 2.9E-33 272.7 15.6 275 268-602 10-291 (306)
305 4fcg_A Uncharacterized protein 100.0 1.4E-28 4.7E-33 272.9 16.6 225 343-598 81-314 (328)
306 3zyi_A Leucine-rich repeat-con 100.0 3.4E-28 1.2E-32 283.1 20.1 254 345-604 56-309 (452)
307 1ozn_A Reticulon 4 receptor; N 100.0 1.2E-28 4.1E-33 268.4 14.7 253 346-627 14-267 (285)
308 3zyj_A Leucine-rich repeat-con 100.0 4.3E-28 1.5E-32 281.3 19.5 254 345-604 45-298 (440)
309 1wwl_A Monocyte differentiatio 100.0 1.5E-29 5.3E-34 279.0 5.2 249 341-600 41-311 (312)
310 1wwl_A Monocyte differentiatio 100.0 2.5E-30 8.5E-35 285.3 -1.2 247 71-357 44-310 (312)
311 3g06_A SSPH2 (leucine-rich rep 100.0 1.2E-28 4.1E-33 293.8 11.3 100 42-155 9-114 (622)
312 3zyi_A Leucine-rich repeat-con 99.9 7.3E-28 2.5E-32 280.3 16.2 247 144-453 56-303 (452)
313 3oja_A Leucine-rich immune mol 99.9 7.1E-29 2.4E-33 290.3 7.5 215 344-598 35-250 (487)
314 3zyj_A Leucine-rich repeat-con 99.9 9.2E-28 3.2E-32 278.4 15.7 247 144-453 45-292 (440)
315 3g06_A SSPH2 (leucine-rich rep 99.9 2.3E-27 7.7E-32 282.8 18.8 69 512-585 240-308 (622)
316 3ogk_B Coronatine-insensitive 99.9 1.7E-30 5.7E-35 314.4 -8.7 425 70-571 73-548 (592)
317 3o53_A Protein LRIM1, AGAP0063 99.9 2.9E-29 1E-33 277.5 -0.0 256 255-604 24-282 (317)
318 1ozn_A Reticulon 4 receptor; N 99.9 4.8E-27 1.7E-31 255.7 17.3 235 343-604 32-267 (285)
319 3o53_A Protein LRIM1, AGAP0063 99.9 2.2E-28 7.4E-33 270.5 6.3 222 341-602 32-255 (317)
320 4azs_A Methyltransferase WBDD; 99.9 2.4E-28 8.4E-33 289.5 4.6 187 708-920 241-438 (569)
321 3oja_A Leucine-rich immune mol 99.9 1.9E-27 6.4E-32 278.2 9.1 241 307-593 28-270 (487)
322 2z62_A TOLL-like receptor 4, v 99.9 8.6E-26 2.9E-30 244.6 16.2 228 347-604 11-243 (276)
323 2o6q_A Variable lymphocyte rec 99.9 1.1E-25 3.8E-30 242.6 14.9 217 55-303 3-219 (270)
324 2p1m_B Transport inhibitor res 99.9 5.4E-30 1.8E-34 310.1 -25.2 461 56-598 33-544 (594)
325 2o6q_A Variable lymphocyte rec 99.9 1.8E-24 6.1E-29 233.1 19.9 186 393-603 38-223 (270)
326 2p1m_B Transport inhibitor res 99.9 8.9E-29 3E-33 299.4 -17.9 414 113-599 61-520 (594)
327 3rfs_A Internalin B, repeat mo 99.9 2.4E-24 8.1E-29 232.4 14.9 184 387-604 58-241 (272)
328 3rfs_A Internalin B, repeat mo 99.9 1.9E-24 6.4E-29 233.2 13.6 230 312-586 18-247 (272)
329 1p9a_G Platelet glycoprotein I 99.9 6.3E-24 2.2E-28 230.8 16.6 206 339-601 6-211 (290)
330 2z62_A TOLL-like receptor 4, v 99.9 1.5E-23 5.3E-28 226.8 18.1 224 372-624 11-240 (276)
331 1p9a_G Platelet glycoprotein I 99.9 2.8E-24 9.7E-29 233.6 12.0 204 90-303 6-209 (290)
332 4glp_A Monocyte differentiatio 99.9 4.2E-24 1.4E-28 235.3 10.3 228 344-599 65-308 (310)
333 2xwt_C Thyrotropin receptor; s 99.9 5.1E-24 1.7E-28 225.2 9.7 197 95-300 32-237 (239)
334 3en9_A Glycoprotease, O-sialog 99.9 3.4E-24 1.2E-28 252.6 8.1 191 704-921 339-539 (540)
335 3goz_A Leucine-rich repeat-con 99.9 6.1E-26 2.1E-30 255.8 -6.8 269 75-366 3-307 (362)
336 3m19_A Variable lymphocyte rec 99.9 1.3E-23 4.6E-28 223.6 10.6 189 57-253 4-192 (251)
337 4ay9_X Follicle-stimulating ho 99.9 2.8E-23 9.4E-28 232.8 11.6 248 53-353 2-256 (350)
338 2xwt_C Thyrotropin receptor; s 99.9 4E-23 1.4E-27 218.3 11.7 200 368-595 31-236 (239)
339 2ca6_A RAN GTPase-activating p 99.9 3.2E-25 1.1E-29 252.6 -5.4 253 281-602 24-320 (386)
340 3m19_A Variable lymphocyte rec 99.9 2.6E-22 9E-27 213.6 17.1 180 370-601 16-195 (251)
341 2o6s_A Variable lymphocyte rec 99.9 1.7E-22 5.9E-27 208.4 15.3 185 53-261 1-186 (208)
342 4glp_A Monocyte differentiatio 99.9 1.9E-23 6.5E-28 230.1 8.4 224 71-303 65-308 (310)
343 3goz_A Leucine-rich repeat-con 99.9 1.6E-24 5.3E-29 244.3 -0.9 233 370-602 24-301 (362)
344 2ast_B S-phase kinase-associat 99.9 7.9E-25 2.7E-29 244.4 -3.9 215 55-300 34-258 (336)
345 4ay9_X Follicle-stimulating ho 99.9 6.8E-23 2.3E-27 229.6 10.0 241 97-379 12-257 (350)
346 3cvr_A Invasion plasmid antige 99.9 2.1E-23 7.3E-28 245.3 4.6 208 45-287 33-252 (571)
347 1h6u_A Internalin H; cell adhe 99.9 5.4E-22 1.9E-26 217.8 13.4 62 509-574 169-230 (308)
348 2ca6_A RAN GTPase-activating p 99.9 5.1E-25 1.8E-29 250.8 -11.3 96 109-204 23-134 (386)
349 1h6u_A Internalin H; cell adhe 99.9 1.1E-21 3.7E-26 215.4 15.2 191 369-600 42-232 (308)
350 1zar_A RIO2 kinase; serine kin 99.9 4.6E-22 1.6E-26 214.6 10.6 164 694-905 83-274 (282)
351 2ast_B S-phase kinase-associat 99.9 8.3E-23 2.8E-27 228.0 2.4 253 344-604 48-312 (336)
352 3cvr_A Invasion plasmid antige 99.8 3E-21 1E-25 227.0 13.6 189 344-586 60-255 (571)
353 2o6s_A Variable lymphocyte rec 99.8 1E-20 3.5E-25 195.1 14.5 74 392-465 28-101 (208)
354 1dce_A Protein (RAB geranylger 99.8 2.8E-23 9.5E-28 246.0 -10.9 222 59-306 286-550 (567)
355 4b8c_D Glucose-repressible alc 99.8 2.2E-21 7.6E-26 237.1 5.4 234 23-275 129-369 (727)
356 2v70_A SLIT-2, SLIT homolog 2 99.8 2.2E-20 7.5E-25 194.0 8.5 182 418-627 13-195 (220)
357 2v9t_B SLIT homolog 2 protein 99.8 3.5E-20 1.2E-24 192.5 9.4 156 395-602 14-169 (220)
358 2v9t_B SLIT homolog 2 protein 99.8 1.3E-19 4.6E-24 188.1 13.0 161 52-229 4-165 (220)
359 2v70_A SLIT-2, SLIT homolog 2 99.8 1.4E-19 4.7E-24 188.0 12.9 153 74-231 15-168 (220)
360 2xot_A Amphoterin-induced prot 99.8 1.2E-19 4E-24 204.1 11.8 179 372-602 22-206 (361)
361 3e6j_A Variable lymphocyte rec 99.8 3.8E-19 1.3E-23 186.0 13.5 156 56-230 18-173 (229)
362 1h6t_A Internalin B; cell adhe 99.8 3.9E-19 1.3E-23 193.2 12.4 171 390-599 44-214 (291)
363 1dce_A Protein (RAB geranylger 99.8 2.6E-21 8.9E-26 229.1 -5.3 192 389-604 346-552 (567)
364 1h6t_A Internalin B; cell adhe 99.8 1.2E-19 4E-24 197.3 7.6 176 91-307 43-218 (291)
365 1m9s_A Internalin B; cell inva 99.8 1E-18 3.5E-23 208.0 16.3 192 240-455 21-212 (605)
366 3e6j_A Variable lymphocyte rec 99.8 1.4E-18 4.9E-23 181.6 13.7 156 394-602 21-176 (229)
367 2xot_A Amphoterin-induced prot 99.8 7.3E-19 2.5E-23 197.6 12.0 177 345-574 20-202 (361)
368 4b8c_D Glucose-repressible alc 99.8 9.5E-20 3.3E-24 222.7 4.3 91 374-468 207-297 (727)
369 1m9s_A Internalin B; cell inva 99.8 1.6E-18 5.6E-23 206.3 13.4 107 339-454 61-167 (605)
370 1w8a_A SLIT protein; signaling 99.7 1.7E-18 5.7E-23 175.7 9.1 135 494-628 34-169 (192)
371 1zth_A RIO1 serine protein kin 99.7 3E-18 1E-22 182.5 11.4 139 701-862 47-219 (258)
372 1xeu_A Internalin C; cellular 99.7 1.3E-18 4.6E-23 185.8 6.3 168 369-600 20-187 (263)
373 1xeu_A Internalin C; cellular 99.7 4.1E-18 1.4E-22 182.0 9.7 170 342-552 18-187 (263)
374 3sb4_A Hypothetical leucine ri 99.7 1.4E-18 4.6E-23 192.9 6.0 265 191-471 48-328 (329)
375 4ezg_A Putative uncharacterize 99.7 7.5E-18 2.6E-22 171.8 9.2 156 387-599 39-195 (197)
376 4ezg_A Putative uncharacterize 99.7 1.3E-17 4.5E-22 170.0 9.9 153 364-574 41-194 (197)
377 1w8a_A SLIT protein; signaling 99.7 3.3E-17 1.1E-21 166.1 12.2 177 395-626 11-188 (192)
378 3sb4_A Hypothetical leucine ri 99.7 5.1E-18 1.8E-22 188.2 2.5 283 191-543 24-327 (329)
379 2wfh_A SLIT homolog 2 protein 99.7 3.9E-17 1.3E-21 165.5 7.5 134 494-628 36-169 (193)
380 2ell_A Acidic leucine-rich nuc 99.7 2.2E-16 7.5E-21 156.4 11.9 139 92-235 22-165 (168)
381 2o6r_A Variable lymphocyte rec 99.6 3.8E-16 1.3E-20 156.2 11.7 137 53-230 1-138 (177)
382 2je0_A Acidic leucine-rich nuc 99.6 3.7E-16 1.3E-20 151.4 8.7 130 92-225 15-149 (149)
383 2wfh_A SLIT homolog 2 protein 99.6 1.1E-15 3.7E-20 154.8 11.9 136 52-229 3-139 (193)
384 2ell_A Acidic leucine-rich nuc 99.6 7E-16 2.4E-20 152.8 9.6 90 509-598 67-160 (168)
385 2je0_A Acidic leucine-rich nuc 99.6 8E-16 2.7E-20 149.0 8.7 128 440-594 17-149 (149)
386 2o6r_A Variable lymphocyte rec 99.6 2.6E-15 8.9E-20 150.1 10.9 110 494-603 33-142 (177)
387 4fdw_A Leucine rich hypothetic 99.6 3.4E-15 1.2E-19 168.9 12.1 271 167-477 112-383 (401)
388 1ds9_A Outer arm dynein; leuci 99.6 4.5E-17 1.5E-21 166.2 -6.3 89 506-598 86-185 (198)
389 4fdw_A Leucine rich hypothetic 99.5 1.2E-14 3.9E-19 164.5 12.4 126 169-301 158-283 (401)
390 4gyi_A RIO2 kinase; protein ki 99.5 6E-15 2E-19 162.4 7.4 144 695-863 89-266 (397)
391 3g39_A Variable lymphocyte rec 99.5 1.8E-14 6E-19 142.7 10.1 108 493-603 13-120 (170)
392 2r9u_A Variable lymphocyte rec 99.5 3.8E-14 1.3E-18 140.7 10.1 108 493-603 16-123 (174)
393 1ds9_A Outer arm dynein; leuci 99.5 1.4E-16 4.7E-21 162.5 -8.0 151 369-575 19-186 (198)
394 1a9n_A U2A', U2A'; complex (nu 99.5 2E-14 6.7E-19 143.4 7.7 134 88-229 13-153 (176)
395 4fs7_A Uncharacterized protein 99.5 1.1E-13 3.8E-18 157.3 14.4 77 509-589 316-392 (394)
396 1a9n_A U2A', U2A'; complex (nu 99.5 1.7E-14 5.8E-19 143.9 6.4 101 494-598 47-153 (176)
397 4fs7_A Uncharacterized protein 99.5 5.9E-13 2E-17 151.3 18.1 307 185-566 87-393 (394)
398 3g39_A Variable lymphocyte rec 99.4 1.4E-12 4.8E-17 128.9 10.3 105 345-453 11-115 (170)
399 2ifg_A High affinity nerve gro 99.3 1.1E-12 3.7E-17 146.5 8.5 130 494-626 13-146 (347)
400 2r9u_A Variable lymphocyte rec 99.3 2.4E-12 8.1E-17 127.7 10.0 104 346-453 15-118 (174)
401 2ifg_A High affinity nerve gro 99.3 1.5E-12 5E-17 145.5 8.4 113 53-181 1-116 (347)
402 3un9_A NLR family member X1; l 99.2 8.9E-14 3E-18 155.7 -7.0 64 512-575 182-253 (372)
403 4gt6_A Cell surface protein; l 99.2 4.3E-11 1.5E-15 135.9 14.4 109 235-355 109-217 (394)
404 3un9_A NLR family member X1; l 99.2 5.3E-13 1.8E-17 149.4 -3.8 162 415-600 71-254 (372)
405 4gt6_A Cell surface protein; l 99.2 1.5E-10 5E-15 131.4 15.3 86 507-597 305-390 (394)
406 3tm0_A Aminoglycoside 3'-phosp 99.1 2.4E-10 8.2E-15 121.9 12.2 148 695-860 8-212 (263)
407 3rw6_A Nuclear RNA export fact 98.9 3.5E-11 1.2E-15 126.2 -6.1 144 59-208 79-236 (267)
408 1nd4_A Aminoglycoside 3'-phosp 98.8 6.6E-09 2.2E-13 110.5 10.1 136 702-860 21-213 (264)
409 4h09_A Hypothetical leucine ri 98.8 2.2E-08 7.4E-13 112.9 13.6 165 389-584 191-355 (379)
410 2ra8_A Uncharacterized protein 98.8 3.3E-10 1.1E-14 125.5 -2.0 158 69-229 106-292 (362)
411 2ra8_A Uncharacterized protein 98.8 3.5E-09 1.2E-13 117.2 5.3 84 511-596 250-341 (362)
412 4h09_A Hypothetical leucine ri 98.8 7.6E-08 2.6E-12 108.4 16.1 317 88-464 40-356 (379)
413 3dxp_A Putative acyl-COA dehyd 98.7 2.7E-08 9.3E-13 111.2 10.1 145 706-862 43-249 (359)
414 3sg8_A APH(2'')-ID; antibiotic 98.7 1.4E-08 4.8E-13 110.6 6.2 195 706-921 25-288 (304)
415 3rw6_A Nuclear RNA export fact 98.5 1.1E-08 3.9E-13 107.1 -0.9 79 511-591 168-257 (267)
416 3r70_A Aminoglycoside phosphot 98.3 1.9E-06 6.5E-11 94.3 11.6 137 702-862 38-238 (320)
417 1io0_A Tropomodulin; LRR prote 98.3 2.4E-08 8.4E-13 99.7 -3.9 123 85-229 27-164 (185)
418 1io0_A Tropomodulin; LRR prote 98.3 1.6E-07 5.3E-12 93.8 1.2 89 510-598 62-164 (185)
419 3d1u_A Putative fructosamine-3 98.2 1.1E-05 3.6E-10 86.5 13.1 144 705-860 19-215 (288)
420 4gkh_A Aminoglycoside 3'-phosp 98.2 8.7E-06 3E-10 86.7 12.1 135 708-860 31-222 (272)
421 3tdw_A Gentamicin resistance p 98.1 1.7E-05 5.9E-10 85.9 12.2 137 706-861 24-224 (306)
422 3ovc_A Hygromycin-B 4-O-kinase 97.8 5.3E-05 1.8E-09 84.0 11.0 147 705-862 45-244 (362)
423 3ats_A Putative uncharacterize 97.7 8.5E-05 2.9E-09 82.5 10.7 84 706-791 25-121 (357)
424 3e4g_A ATP synthase subunit S, 97.6 2.1E-05 7.1E-10 76.2 3.2 84 513-596 61-150 (176)
425 2olc_A MTR kinase, methylthior 97.6 0.00014 4.7E-09 82.1 10.4 76 706-788 35-120 (397)
426 3f7w_A Putative fructosamine-3 97.5 0.00035 1.2E-08 74.8 10.2 78 702-789 16-96 (288)
427 2q83_A YTAA protein; 2635576, 97.4 0.00078 2.7E-08 74.1 12.3 148 707-860 38-251 (346)
428 3e4g_A ATP synthase subunit S, 97.3 7.4E-05 2.5E-09 72.3 1.7 34 169-202 115-149 (176)
429 3jr1_A Putative fructosamine-3 97.1 0.0022 7.5E-08 69.0 11.4 141 706-857 41-232 (312)
430 3rfe_A Platelet glycoprotein I 97.0 0.00067 2.3E-08 62.6 5.1 60 541-602 12-72 (130)
431 2pyw_A Uncharacterized protein 96.8 0.0035 1.2E-07 71.0 10.3 78 830-917 231-313 (420)
432 1pgv_A TMD-1, tropomodulin TMD 96.6 0.00023 8E-09 70.2 -1.1 42 388-429 122-170 (197)
433 1pgv_A TMD-1, tropomodulin TMD 96.4 0.0011 3.7E-08 65.4 2.6 86 512-597 69-169 (197)
434 3rfe_A Platelet glycoprotein I 96.4 0.0034 1.2E-07 57.7 5.4 37 538-574 32-68 (130)
435 3dxq_A Choline/ethanolamine ki 96.4 0.01 3.4E-07 63.8 10.0 71 706-790 23-95 (301)
436 2ppq_A HSK, HK, homoserine kin 96.3 0.012 3.9E-07 63.9 10.4 167 690-860 6-216 (322)
437 1zyl_A Hypothetical protein YI 96.3 0.034 1.2E-06 60.3 14.2 168 688-861 8-223 (328)
438 3feg_A Choline/ethanolamine ki 96.2 0.015 5.1E-07 64.3 10.2 145 707-861 56-254 (379)
439 2qg7_A Ethanolamine kinase PV0 96.1 0.02 6.8E-07 65.0 10.9 74 706-789 113-187 (458)
440 1nw1_A Choline kinase (49.2 KD 96.0 0.015 5E-07 65.8 9.3 73 706-789 78-158 (429)
441 3csv_A Aminoglycoside phosphot 95.9 0.052 1.8E-06 59.0 13.1 145 707-862 24-218 (333)
442 2yle_A Protein spire homolog 1 95.8 0.097 3.3E-06 51.8 12.9 103 788-919 33-135 (229)
443 3c5i_A Choline kinase; choline 95.3 0.019 6.6E-07 63.6 6.7 73 707-789 39-120 (369)
444 3i1a_A Spectinomycin phosphotr 95.0 0.044 1.5E-06 59.8 8.4 33 830-862 205-237 (339)
445 3mes_A Choline kinase; malaria 92.7 0.17 5.9E-06 56.5 7.6 73 707-789 76-156 (424)
446 3f2s_A CK, chetk-alpha, cholin 91.3 0.89 3E-05 50.2 11.1 31 830-860 243-279 (401)
447 3g15_A CK, chetk-alpha, cholin 86.2 1.3 4.5E-05 49.2 8.0 30 832-861 245-280 (401)
448 2ks1_B Epidermal growth factor 80.5 0.59 2E-05 32.9 1.2 18 647-664 12-29 (44)
449 3cxl_A N-chimerin; SH2, RHO-GA 77.8 0.28 9.6E-06 55.7 -1.7 62 705-769 146-215 (463)
450 2l2t_A Receptor tyrosine-prote 72.2 0.72 2.5E-05 32.4 -0.1 16 648-663 12-27 (44)
451 4ano_A ESSB; membrane protein, 69.6 8 0.00027 38.3 6.6 103 776-922 61-164 (219)
452 4ann_A ESSB; membrane protein, 61.2 12 0.00041 36.9 6.0 83 806-923 78-160 (215)
453 2jwa_A Receptor tyrosine-prote 57.0 1.4 4.7E-05 30.9 -1.1 8 666-673 32-39 (44)
454 2k9y_A Ephrin type-A receptor 46.2 4.9 0.00017 27.8 0.3 14 647-660 14-27 (41)
455 2lz0_A Uncharacterized protein 42.7 38 0.0013 28.7 5.5 47 251-299 7-53 (100)
456 2lz0_A Uncharacterized protein 24.7 91 0.0031 26.3 4.9 45 380-425 8-52 (100)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.6e-83 Score=798.92 Aligned_cols=597 Identities=30% Similarity=0.483 Sum_probs=455.5
Q ss_pred hhcCChhhHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCCccceeeCCCCCeEEEEEeecCCcccc---cC---------
Q 047768 20 LALSNETDCLSLLAIKSQLHDPLGVTSSWNRSACVNLCQHWTGVTCGRRNQRVTKLDLRNQSIGGI---LS--------- 87 (1009)
Q Consensus 20 ~~~~~~~d~~aLl~~k~~~~~~~~~~~sW~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~~~l~~~---~~--------- 87 (1009)
++.+.++|++|||+||+++.||. .+++|+.+ .+|| +|+||+|+ +++|+.|||+++++.|. ++
T Consensus 6 ~~~~~~~~~~all~~k~~~~~~~-~l~~W~~~--~~~C-~w~gv~C~--~~~v~~L~L~~~~l~g~~~~l~~~l~~L~~L 79 (768)
T 3rgz_A 6 PSQSLYREIHQLISFKDVLPDKN-LLPDWSSN--KNPC-TFDGVTCR--DDKVTSIDLSSKPLNVGFSAVSSSLLSLTGL 79 (768)
T ss_dssp --CCHHHHHHHHHHHHTTCSCTT-SSTTCCTT--SCGG-GSTTEEEE--TTEEEEEECTTSCCCEEHHHHHHHTTTCTTC
T ss_pred cccCCHHHHHHHHHHHhhCCCcc-cccCCCCC--CCCc-CCcceEEC--CCcEEEEECCCCCcCCccCccChhHhccCcc
Confidence 34457899999999999999998 89999844 3445 89999998 68999999999999887 44
Q ss_pred --------------ccccCCCCCCeeeecCCcCCccCCc--cccCccccccccccccccCCCCCCCC-cCCCcCcEEecc
Q 047768 88 --------------PYVGNLSFLRYINIADNDFHGEIPD--RIGNLFRLETLVLANNSFSGRIPTNL-SHCSKLITFSAH 150 (1009)
Q Consensus 88 --------------~~~~~l~~L~~L~L~~n~~~~~~p~--~~~~l~~L~~L~Ls~N~l~~~~p~~l-~~l~~L~~L~l~ 150 (1009)
+.++.+++|++|||++|.++|.+|. .|+++++|++|||++|.+++.+|..+ +++++|++||++
T Consensus 80 ~~l~~~~~~~~~l~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls 159 (768)
T 3rgz_A 80 ESLFLSNSHINGSVSGFKCSASLTSLDLSRNSLSGPVTTLTSLGSCSGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLS 159 (768)
T ss_dssp CEEECTTSCEEECCCCCCCCTTCCEEECCSSEEEEEGGGGGGGGGCTTCCEEECCSSEEECCSSCCSCCCCTTCSEEECC
T ss_pred cccCCcCCCcCCCchhhccCCCCCEEECCCCcCCCcCCChHHHhCCCCCCEEECcCCccCCcCCHHHhccCCCCCEEECC
Confidence 4678889999999999999999998 89999999999999999999888876 888888888888
Q ss_pred cccccCCCchHHh-h----------------------hccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCC
Q 047768 151 RNNLVGEIPEELI-S----------------------RRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGK 207 (1009)
Q Consensus 151 ~n~l~~~~p~~~~-~----------------------~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 207 (1009)
+|++++..|..+. . ..+.+|++|+|++|++++.+|. ++++++|++|+|++|++++.
T Consensus 160 ~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~ 238 (768)
T 3rgz_A 160 ANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFLDVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGD 238 (768)
T ss_dssp SSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEEECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSC
T ss_pred CCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEEECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCc
Confidence 8888877766521 1 3456677777777777766666 77778888888888888777
Q ss_pred CCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCc
Q 047768 208 IPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSN 287 (1009)
Q Consensus 208 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 287 (1009)
+|..|..+++|++|+|++|++++.+|.. .+++|++|+|++|+++|.+|..++..+++|++|+|++|++++.+|..|++
T Consensus 239 ~~~~l~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~ 316 (768)
T 3rgz_A 239 FSRAISTCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGS 316 (768)
T ss_dssp HHHHTTTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGG
T ss_pred ccHHHhcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhc
Confidence 7777778888888888888777666654 67777778888888877888877766688888888888888888888888
Q ss_pred ccccccccccccccccccccc-cccccccccccccccccCCCCCCCcc-------------------hhhhccc--cccc
Q 047768 288 ASNLEVLHLAENQFRGQVSIN-FNGLKDLSMLGLATNFLGNGAANDLD-------------------FVDLLTN--CTKL 345 (1009)
Q Consensus 288 l~~L~~L~Ls~N~l~~~~~~~-f~~l~~L~~L~L~~N~l~~~~~~~~~-------------------~~~~l~~--l~~L 345 (1009)
+++|++|+|++|++.+..+.. |..+++|+.|++++|.+.......+. .+..+.. +++|
T Consensus 317 l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L 396 (768)
T 3rgz_A 317 CSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTL 396 (768)
T ss_dssp CTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCC
T ss_pred CCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCc
Confidence 888888888888888655544 77888888888888877521111110 0111111 3445
Q ss_pred ceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceeccc
Q 047768 346 QYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHA 425 (1009)
Q Consensus 346 ~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 425 (1009)
++|++++|++++.+|..+.++ +.|+.|+|++|++++.+|..|.++++|+.|+|++|++++.+|..+..+++|++|+|++
T Consensus 397 ~~L~L~~n~l~~~~p~~l~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~ 475 (768)
T 3rgz_A 397 QELYLQNNGFTGKIPPTLSNC-SELVSLHLSFNYLSGTIPSSLGSLSKLRDLKLWLNMLEGEIPQELMYVKTLETLILDF 475 (768)
T ss_dssp CEEECCSSEEEEECCGGGGGC-TTCCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCS
T ss_pred cEEECCCCccccccCHHHhcC-CCCCEEECcCCcccCcccHHHhcCCCCCEEECCCCcccCcCCHHHcCCCCceEEEecC
Confidence 555555555555555555555 4566666666666666666666666666666666666666666666666666666666
Q ss_pred ccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCC
Q 047768 426 NFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSL 505 (1009)
Q Consensus 426 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~ 505 (1009)
|++++.+|..+.++++|++|++++|++++.+|.+++.+++|++|++++|+++|.+|..+..+..+. .||+++|+++|.+
T Consensus 476 N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~-~L~Ls~N~l~g~i 554 (768)
T 3rgz_A 476 NDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLI-WLDLNTNLFNGTI 554 (768)
T ss_dssp SCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCC-EEECCSSEEESBC
T ss_pred CcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCC-EEECCCCccCCcC
Confidence 666655666666666666666666666666666666666666666666666655555555444433 3666666555554
Q ss_pred C----------------------------------------------------------------------CCccCCCCC
Q 047768 506 P----------------------------------------------------------------------LGVGNLKSL 515 (1009)
Q Consensus 506 p----------------------------------------------------------------------~~~~~l~~L 515 (1009)
| ..++++++|
T Consensus 555 p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L 634 (768)
T 3rgz_A 555 PAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSM 634 (768)
T ss_dssp CGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCC
T ss_pred ChHHhcccchhhhhccccccccccccccccccccccccccccccccchhhhccccccccccccceecccCchhhhccccc
Confidence 4 455667889
Q ss_pred CeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccc
Q 047768 516 VRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYN 595 (1009)
Q Consensus 516 ~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 595 (1009)
+.|||++|+++|.+|.+++.+++|+.|+|++|+++|.+|..|+++++|+.|||++|+++|.+|..+..+++|++|||++|
T Consensus 635 ~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N 714 (768)
T 3rgz_A 635 MFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIPDEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNN 714 (768)
T ss_dssp CEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSS
T ss_pred cEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCChHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cCcccCCCCCcccCccccccccCCCcCCCCCC
Q 047768 596 HFEGEVPTKGIFKNKTGFSIVGNGKLCGGLDE 627 (1009)
Q Consensus 596 ~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~ 627 (1009)
+|+|.||..++|.++...+|.||+++||.|..
T Consensus 715 ~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l~ 746 (768)
T 3rgz_A 715 NLSGPIPEMGQFETFPPAKFLNNPGLCGYPLP 746 (768)
T ss_dssp EEEEECCSSSSGGGSCGGGGCSCTEEESTTSC
T ss_pred cccccCCCchhhccCCHHHhcCCchhcCCCCc
Confidence 99999999999999999999999999998754
No 2
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=100.00 E-value=1.4e-65 Score=637.63 Aligned_cols=517 Identities=31% Similarity=0.490 Sum_probs=431.4
Q ss_pred CeEEEEEeecCCcccccCccc-cCCCCCCeeeecCCcCCccCCcc---cc----------------------Cccccccc
Q 047768 70 QRVTKLDLRNQSIGGILSPYV-GNLSFLRYINIADNDFHGEIPDR---IG----------------------NLFRLETL 123 (1009)
Q Consensus 70 ~~v~~l~l~~~~l~~~~~~~~-~~l~~L~~L~L~~n~~~~~~p~~---~~----------------------~l~~L~~L 123 (1009)
.+++.|+|++|.+.+.++..+ +++++|++|+|++|++++.+|.. ++ ++++|++|
T Consensus 126 ~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 205 (768)
T 3rgz_A 126 SGLKFLNVSSNTLDFPGKVSGGLKLNSLEVLDLSANSISGANVVGWVLSDGCGELKHLAISGNKISGDVDVSRCVNLEFL 205 (768)
T ss_dssp TTCCEEECCSSEEECCSSCCSCCCCTTCSEEECCSSCCEEETHHHHHHTTCCTTCCEEECCSSEEESCCBCTTCTTCCEE
T ss_pred CCCCEEECcCCccCCcCCHHHhccCCCCCEEECCCCccCCcCChhhhhhccCCCCCEEECCCCcccccCCcccCCcCCEE
Confidence 367888888888888777665 67777777777777777666654 44 45555666
Q ss_pred cccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCc
Q 047768 124 VLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNR 203 (1009)
Q Consensus 124 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 203 (1009)
+|++|.+++.+|. ++++++|++|++++|++++.+|..+ ..+++|++|+|++|++++.+|.. .+++|++|+|++|+
T Consensus 206 ~Ls~n~l~~~~~~-l~~l~~L~~L~Ls~n~l~~~~~~~l--~~l~~L~~L~Ls~n~l~~~~~~~--~l~~L~~L~L~~n~ 280 (768)
T 3rgz_A 206 DVSSNNFSTGIPF-LGDCSALQHLDISGNKLSGDFSRAI--STCTELKLLNISSNQFVGPIPPL--PLKSLQYLSLAENK 280 (768)
T ss_dssp ECCSSCCCSCCCB-CTTCCSCCEEECCSSCCCSCHHHHT--TTCSSCCEEECCSSCCEESCCCC--CCTTCCEEECCSSE
T ss_pred ECcCCcCCCCCcc-cccCCCCCEEECcCCcCCCcccHHH--hcCCCCCEEECCCCcccCccCcc--ccCCCCEEECcCCc
Confidence 6666666655555 6666666666666666666666655 45666666666666666655554 56667777777777
Q ss_pred ccCCCCcccccc-cccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCC
Q 047768 204 LWGKIPITLSQL-TSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLP 282 (1009)
Q Consensus 204 l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p 282 (1009)
+++.+|..+..+ ++|++|+|++|++++.+|..|.++++|++|+|++|+++|.+|...+.++++|++|++++|.+++.+|
T Consensus 281 l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~l~~~~p 360 (768)
T 3rgz_A 281 FTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNEFSGELP 360 (768)
T ss_dssp EEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSEEEECCC
T ss_pred cCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCccCcccc
Confidence 776777777665 8888888888888888888888888888888888888878887766778888888888888888888
Q ss_pred CCcCccc-cccccccccccccccccccccc--ccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcC
Q 047768 283 DSFSNAS-NLEVLHLAENQFRGQVSINFNG--LKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVL 359 (1009)
Q Consensus 283 ~~~~~l~-~L~~L~Ls~N~l~~~~~~~f~~--l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~ 359 (1009)
..+.+++ +|++|+|++|++++..+..+.. +++|+.|++++|.+... .+..+.++++|++|+|++|++++.+
T Consensus 361 ~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~------~p~~l~~l~~L~~L~Ls~N~l~~~~ 434 (768)
T 3rgz_A 361 ESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGK------IPPTLSNCSELVSLHLSFNYLSGTI 434 (768)
T ss_dssp TTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEE------CCGGGGGCTTCCEEECCSSEEESCC
T ss_pred HHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccc------cCHHHhcCCCCCEEECcCCcccCcc
Confidence 8888887 8888888888888777776665 77888888888887642 3467889999999999999999999
Q ss_pred chhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccc
Q 047768 360 PHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNL 439 (1009)
Q Consensus 360 p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 439 (1009)
|..+..+ +.|+.|++++|++++.+|..+..+++|+.|+|++|++++.+|..+..+++|++|+|++|++++.+|.+++++
T Consensus 435 p~~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l 513 (768)
T 3rgz_A 435 PSSLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNNRLTGEIPKWIGRL 513 (768)
T ss_dssp CGGGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGC
T ss_pred cHHHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCCccCCcCChHHhcC
Confidence 9999998 689999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred cccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhc-------------------------------
Q 047768 440 TLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEIT------------------------------- 488 (1009)
Q Consensus 440 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~------------------------------- 488 (1009)
++|++|++++|+++|.+|..++++++|++|++++|+++|.+|..++...
T Consensus 514 ~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 593 (768)
T 3rgz_A 514 ENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNL 593 (768)
T ss_dssp TTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEE
T ss_pred CCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccc
Confidence 9999999999999999999999999999999999999999998765421
Q ss_pred --------------------------------------cceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCcc
Q 047768 489 --------------------------------------TLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIP 530 (1009)
Q Consensus 489 --------------------------------------~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 530 (1009)
.....|||++|+++|.+|..|+++++|+.|+|++|+++|.+|
T Consensus 594 ~~~~~~~~~~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~Ls~N~l~g~ip 673 (768)
T 3rgz_A 594 LEFQGIRSEQLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKEIGSMPYLFILNLGHNDISGSIP 673 (768)
T ss_dssp EECTTCCGGGGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGGGGGCTTCCEEECCSSCCCSCCC
T ss_pred cccccccchhhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHHHhccccCCEEeCcCCccCCCCC
Confidence 123469999999999999999999999999999999999999
Q ss_pred ccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceeccccc-Ccc
Q 047768 531 VTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNH-FEG 599 (1009)
Q Consensus 531 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~-l~g 599 (1009)
..++.+++|+.|||++|+++|.+|..++++++|++|||++|+++|.+|.. +.+..+....+.+|+ |+|
T Consensus 674 ~~l~~L~~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~-~~~~~~~~~~~~gN~~Lcg 742 (768)
T 3rgz_A 674 DEVGDLRGLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEM-GQFETFPPAKFLNNPGLCG 742 (768)
T ss_dssp GGGGGCTTCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSS-SSGGGSCGGGGCSCTEEES
T ss_pred hHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCc-hhhccCCHHHhcCCchhcC
Confidence 99999999999999999999999999999999999999999999999965 556667777788886 554
No 3
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=4.3e-60 Score=583.47 Aligned_cols=560 Identities=19% Similarity=0.196 Sum_probs=476.5
Q ss_pred CccceeeCCC---------CCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccc
Q 047768 59 HWTGVTCGRR---------NQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNS 129 (1009)
Q Consensus 59 ~w~gv~C~~~---------~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~ 129 (1009)
.++-|.|+.. ..+++.|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.
T Consensus 5 ~~~~~~cs~~~L~~ip~~~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~ 84 (680)
T 1ziw_A 5 SHEVADCSHLKLTQVPDDLPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNE 84 (680)
T ss_dssp BSSEEECCSSCCSSCCSCSCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSC
T ss_pred ECCeeECCCCCccccccccCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCccCHHHHhcccCcCEEECCCCc
Confidence 4566777642 2579999999999999888899999999999999999999999999999999999999999
Q ss_pred cCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCC
Q 047768 130 FSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIP 209 (1009)
Q Consensus 130 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 209 (1009)
+++..+..|+++++|++|++++|++.+..|..+ ..+.+|++|+|++|.+++..|..++++++|++|++++|++++..+
T Consensus 85 l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 162 (680)
T 1ziw_A 85 LSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPF--VKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKS 162 (680)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTT--TTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCH
T ss_pred cCccChhhhccCCCCCEEECCCCccCccChhHc--cccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCH
Confidence 996666689999999999999999986665665 679999999999999999999999999999999999999998888
Q ss_pred cccc--cccccccccccCccCCCCCCCcccCCC---------------------------hHHHHHhhCCccCCCCChhh
Q 047768 210 ITLS--QLTSLAYLHVGDNHFSGTIPPSVYNIS---------------------------SLVEIYLYGNRFTGSLPIEI 260 (1009)
Q Consensus 210 ~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~---------------------------~L~~L~L~~N~l~~~ip~~~ 260 (1009)
..+. .+++|++|++++|++++..|..|..++ +|++|++++|++++..|. .
T Consensus 163 ~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~-~ 241 (680)
T 1ziw_A 163 EELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNT-T 241 (680)
T ss_dssp HHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTT-T
T ss_pred HHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHhhhccccEEEccCCcccccChh-H
Confidence 7765 458999999999999988888777654 456677888888844443 4
Q ss_pred ccCCCc--ccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchh--
Q 047768 261 GKNLPN--LRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFV-- 336 (1009)
Q Consensus 261 ~~~l~~--L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~-- 336 (1009)
+.+++. |++|+|++|++++..|..|+++++|++|+|++|++.+..+..|.++++|+.|++++|....... ...++
T Consensus 242 ~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~-~~~lp~i 320 (680)
T 1ziw_A 242 FLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHSLHGLFNVRYLNLKRSFTKQSIS-LASLPKI 320 (680)
T ss_dssp TGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSCCBSEECTTTTTTCTTCCEEECTTCBCCC-------CCEE
T ss_pred hhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCCccCccChhhhcCCCCccEEeccchhhhcccc-ccccccc
Confidence 445644 9999999999998888999999999999999999999999999999999999998876542100 00011
Q ss_pred --hhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCcccc--CCCccccCc--CccCEEEccCCCCCCCCCC
Q 047768 337 --DLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYG--TIPPGIANL--VNLNSLRMEANRLTGTIPH 410 (1009)
Q Consensus 337 --~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~--~~p~~~~~l--~~L~~L~L~~N~l~~~~p~ 410 (1009)
..|..+++|++|++++|.+++..+..+.++ ..|++|++++|.+.. ..+..|..+ ++|+.|++++|++++..|.
T Consensus 321 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~ 399 (680)
T 1ziw_A 321 DDFSFQWLKCLEHLNMEDNDIPGIKSNMFTGL-INLKYLSLSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESD 399 (680)
T ss_dssp CTTTTTTCTTCCEEECCSCCBCCCCTTTTTTC-TTCCEEECTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTT
T ss_pred ChhhcccCCCCCEEECCCCccCCCChhHhccc-cCCcEEECCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChh
Confidence 256788999999999999999888888887 679999999998543 233345444 5899999999999999999
Q ss_pred CcCCcccccceecccccccCCCC-cccccccccccccccCcccccccCCCCCCCCCccccccCCCCcc--CCCchhhhhh
Q 047768 411 VIGELKNLQLLHLHANFLQGTIP-SSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLT--GALPQQILEI 487 (1009)
Q Consensus 411 ~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~--~~~p~~~~~~ 487 (1009)
.|..+++|++|+|++|++++.+| ..|.++++|++|++++|++++..+..+..+++|+.|++++|.++ +.+|..+...
T Consensus 400 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l 479 (680)
T 1ziw_A 400 AFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYNKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPL 479 (680)
T ss_dssp TTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSCSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTC
T ss_pred hhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCCCcceeChhhhhcCcccccchhccccccccccCCcccccC
Confidence 99999999999999999987666 68999999999999999999999999999999999999999987 5677777666
Q ss_pred ccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCcc--------ccccCCCCccEEEecCccccccccccccc
Q 047768 488 TTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIP--------VTLGACTSLEYVELQGNSFSGTIPQSLSS 559 (1009)
Q Consensus 488 ~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p--------~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 559 (1009)
..+. .|++++|++++..|..|.++++|++|++++|++++..+ ..+.++++|+.|+|++|+++...+..|++
T Consensus 480 ~~L~-~L~Ls~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~ 558 (680)
T 1ziw_A 480 RNLT-ILDLSNNNIANINDDMLEGLEKLEILDLQHNNLARLWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKD 558 (680)
T ss_dssp TTCC-EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCGGGGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTT
T ss_pred CCCC-EEECCCCCCCcCChhhhccccccCEEeCCCCCccccchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHccc
Confidence 6655 59999999998888889999999999999999986422 34789999999999999999655567999
Q ss_pred ccccceEcCCCcccccccccccccccccCceecccccCcccCCCC-C-cccCccccccccCCCcCCC
Q 047768 560 LTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK-G-IFKNKTGFSIVGNGKLCGG 624 (1009)
Q Consensus 560 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~-~~~~~~~~~~~~n~~lc~~ 624 (1009)
+++|++|||++|+|++..|..|..+++|++|+|++|++++..|.. + .+.++....+.+|++.|+-
T Consensus 559 l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~l~l~~N~~~c~c 625 (680)
T 1ziw_A 559 LFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITSVEKKVFGPAFRNLTELDMRFNPFDCTC 625 (680)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCBCCHHHHHHHHTTCSEEECTTCCCCBCC
T ss_pred ccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCccChhHhcccccccCEEEccCCCcccCC
Confidence 999999999999999777777899999999999999999877653 2 4567777888999999964
No 4
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=100.00 E-value=5.3e-58 Score=564.82 Aligned_cols=524 Identities=20% Similarity=0.220 Sum_probs=455.7
Q ss_pred CeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEec
Q 047768 70 QRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSA 149 (1009)
Q Consensus 70 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 149 (1009)
.+++.|+|++|.+++..|..++++++|++|+|++|.+++..+..|+++++|++|+|++|++++..|..|+++++|++|++
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 128 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNLITLDL 128 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTCCEEEC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccCccChhhhccCCCCCEEECCCCccCccChhHccccCCCCEEEC
Confidence 46889999999999988889999999999999999999554557999999999999999999877889999999999999
Q ss_pred ccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccC--CccccceeecccCcccCCCCcccccc------------
Q 047768 150 HRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIG--NLSALRVIDIRTNRLWGKIPITLSQL------------ 215 (1009)
Q Consensus 150 ~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l------------ 215 (1009)
++|.+++..|..+ ..+++|++|++++|.+++..+..++ .+++|++|++++|++.+..|..|..+
T Consensus 129 s~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~~~ 206 (680)
T 1ziw_A 129 SHNGLSSTKLGTQ--VQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLNNVQ 206 (680)
T ss_dssp CSSCCSCCCCCSS--SCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECTTCC
T ss_pred CCCcccccCchhh--cccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhccccc
Confidence 9999988777665 5788999999999999987777654 55899999999999988888877655
Q ss_pred ---------------cccccccccCccCCCCCCCcccCCCh--HHHHHhhCCccCCCCChhhccCCCcccceeccccccC
Q 047768 216 ---------------TSLAYLHVGDNHFSGTIPPSVYNISS--LVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFT 278 (1009)
Q Consensus 216 ---------------~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~ 278 (1009)
++|++|++++|.+++..|..|.+++. |++|+|++|+++ .++...+..+++|++|++++|+++
T Consensus 207 l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~n~l~ 285 (680)
T 1ziw_A 207 LGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLN-VVGNDSFAWLPQLEYFFLEYNNIQ 285 (680)
T ss_dssp CHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCC-EECTTTTTTCTTCCEEECCSCCBS
T ss_pred cChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcC-ccCcccccCcccccEeeCCCCccC
Confidence 45778888999999888999998866 999999999999 555566678999999999999999
Q ss_pred CCCCCCcCccccccccccccccccc---------ccccccccccccccccccccccCCCCCCCcchhhhcccccccceEE
Q 047768 279 GSLPDSFSNASNLEVLHLAENQFRG---------QVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLY 349 (1009)
Q Consensus 279 ~~~p~~~~~l~~L~~L~Ls~N~l~~---------~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~ 349 (1009)
+..|..|.++++|++|++++|...+ +....|..+++|+.|++++|.+..... ..|.++++|++|+
T Consensus 286 ~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~ 359 (680)
T 1ziw_A 286 HLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLNMEDNDIPGIKS------NMFTGLINLKYLS 359 (680)
T ss_dssp EECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEECCSCCBCCCCT------TTTTTCTTCCEEE
T ss_pred ccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEECCCCccCCCCh------hHhccccCCcEEE
Confidence 9999999999999999999876543 333478899999999999999987654 4678899999999
Q ss_pred ccCCCCCCc--Cchhhhhhc-ccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCC-CCcCCcccccceeccc
Q 047768 350 LADNGFGGV--LPHSIANLS-TALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIP-HVIGELKNLQLLHLHA 425 (1009)
Q Consensus 350 L~~N~l~~~--~p~~~~~l~-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~ 425 (1009)
+++|.+... .+..+..+. ..|+.|++++|++++..|..|..+++|+.|+|++|++++.+| ..|.++++|++|+|++
T Consensus 360 Ls~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~ 439 (680)
T 1ziw_A 360 LSNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSY 439 (680)
T ss_dssp CTTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCS
T ss_pred CCCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCC
Confidence 999986533 223343332 479999999999999999999999999999999999987666 6899999999999999
Q ss_pred ccccCCCCcccccccccccccccCcccc--cccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCC
Q 047768 426 NFLQGTIPSSLGNLTLLTYLSFGANNLQ--GNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNG 503 (1009)
Q Consensus 426 N~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~ 503 (1009)
|++++..+..|..+++|++|++++|.++ +.+|..+.++++|+.|++++|++++..|..+.....+ ..|++++|++++
T Consensus 440 n~l~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~p~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L-~~L~Ls~N~l~~ 518 (680)
T 1ziw_A 440 NKYLQLTRNSFALVPSLQRLMLRRVALKNVDSSPSPFQPLRNLTILDLSNNNIANINDDMLEGLEKL-EILDLQHNNLAR 518 (680)
T ss_dssp CSEEECCTTTTTTCTTCCEEECTTSCCBCTTCSSCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC-CEEECCSSCCGG
T ss_pred CCcceeChhhhhcCcccccchhccccccccccCCcccccCCCCCEEECCCCCCCcCChhhhcccccc-CEEeCCCCCccc
Confidence 9999999999999999999999999997 6789999999999999999999996655555555444 469999999986
Q ss_pred CC----C----CCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccccc
Q 047768 504 SL----P----LGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSG 575 (1009)
Q Consensus 504 ~~----p----~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 575 (1009)
.. | ..|.++++|++|+|++|+++...+..|.++++|+.|+|++|+|++..+..|.++++|+.|+|++|+|++
T Consensus 519 ~~~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 598 (680)
T 1ziw_A 519 LWKHANPGGPIYFLKGLSHLHILNLESNGFDEIPVEVFKDLFELKIIDLGLNNLNTLPASVFNNQVSLKSLNLQKNLITS 598 (680)
T ss_dssp GGSTTSTTSCCCTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCCCB
T ss_pred cchhhccCCcchhhcCCCCCCEEECCCCCCCCCCHHHcccccCcceeECCCCCCCcCCHhHhCCCCCCCEEECCCCcCCc
Confidence 42 2 237899999999999999995555679999999999999999998778889999999999999999999
Q ss_pred ccccccc-cccccCceecccccCcccCCC
Q 047768 576 QIPKYLE-NLSFLQYLNLSYNHFEGEVPT 603 (1009)
Q Consensus 576 ~~p~~~~-~l~~L~~L~ls~N~l~g~~p~ 603 (1009)
..|..+. .+++|++|++++|++.|.++.
T Consensus 599 ~~~~~~~~~~~~L~~l~l~~N~~~c~c~~ 627 (680)
T 1ziw_A 599 VEKKVFGPAFRNLTELDMRFNPFDCTCES 627 (680)
T ss_dssp CCHHHHHHHHTTCSEEECTTCCCCBCCCC
T ss_pred cChhHhcccccccCEEEccCCCcccCCcc
Confidence 8888887 899999999999999999985
No 5
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=3.6e-58 Score=558.58 Aligned_cols=528 Identities=20% Similarity=0.193 Sum_probs=424.3
Q ss_pred ccceeeCCC---------CCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCcccccccccccccc
Q 047768 60 WTGVTCGRR---------NQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSF 130 (1009)
Q Consensus 60 w~gv~C~~~---------~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l 130 (1009)
+..|.|... ...++.|+|++|.+++..+..|+++++|++|+|++|++++..|..|+++++|++|+|++|++
T Consensus 14 ~~~~~c~~~~l~~iP~~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l 93 (606)
T 3t6q_A 14 NKTYNCENLGLNEIPGTLPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANPL 93 (606)
T ss_dssp TTEEECTTSCCSSCCTTSCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred CceEECCCCCcccCcCCCCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCcc
Confidence 455788643 24688899999999888888888999999999999988888888899999999999999998
Q ss_pred CCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCc
Q 047768 131 SGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPI 210 (1009)
Q Consensus 131 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 210 (1009)
++..|..|+++++|++|++++|.+++..|..+ ..+.+|++|+|++|++++..+..+..+++|++|++++|++.+..|.
T Consensus 94 ~~~~~~~~~~l~~L~~L~L~~n~i~~l~~~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 171 (606)
T 3t6q_A 94 IFMAETALSGPKALKHLFFIQTGISSIDFIPL--HNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKE 171 (606)
T ss_dssp SEECTTTTSSCTTCCEEECTTSCCSCGGGSCC--TTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHH
T ss_pred cccChhhhcccccccEeeccccCcccCCcchh--ccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChh
Confidence 88888889999999999999998886545544 5788889999999988875444445588899999999988888888
Q ss_pred ccccccccc--cccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceecccccc-----CCCCCC
Q 047768 211 TLSQLTSLA--YLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNF-----TGSLPD 283 (1009)
Q Consensus 211 ~~~~l~~L~--~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l-----~~~~p~ 283 (1009)
.|+.+++|+ .|++++|.+++..|..+. ..+|++|++++|.. ++. .+.++.++....+..+.+ ..+.+.
T Consensus 172 ~~~~l~~L~~l~L~l~~n~l~~~~~~~~~-~~~L~~L~l~~~~~---~~~-~~~~l~~~~l~~l~~~~~~~~~~~~i~~~ 246 (606)
T 3t6q_A 172 DMSSLQQATNLSLNLNGNDIAGIEPGAFD-SAVFQSLNFGGTQN---LLV-IFKGLKNSTIQSLWLGTFEDMDDEDISPA 246 (606)
T ss_dssp HHHTTTTCCSEEEECTTCCCCEECTTTTT-TCEEEEEECTTCSC---HHH-HHHHTTTCEEEEEECCCCTTSCCCCCCGG
T ss_pred hhhhhcccceeEEecCCCccCccChhHhh-hccccccccCCchh---HHH-HhhhccccchhheechhhccccccccChh
Confidence 888888888 788888988866665554 46788888888762 221 222333333322222221 223344
Q ss_pred CcCccc--ccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCch
Q 047768 284 SFSNAS--NLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPH 361 (1009)
Q Consensus 284 ~~~~l~--~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~ 361 (1009)
.|.++. +|++|++++|+++++.+..|..+++|+.|++++|.+..++ ..+.++++|++|++++|.+++..|.
T Consensus 247 ~~~~l~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp-------~~l~~l~~L~~L~l~~n~l~~~~~~ 319 (606)
T 3t6q_A 247 VFEGLCEMSVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELP-------SGLVGLSTLKKLVLSANKFENLCQI 319 (606)
T ss_dssp GGGGGGGSEEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCC-------SSCCSCTTCCEEECTTCCCSBGGGG
T ss_pred HhchhhcCceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCC-------hhhcccccCCEEECccCCcCcCchh
Confidence 455544 6888888888888888888888888888888888887544 3467788888888888888877777
Q ss_pred hhhhhcccceEEEcCCCccccCCCc-cccCcCccCEEEccCCCCCCCC--CCCcCCcccccceecccccccCCCCccccc
Q 047768 362 SIANLSTALIDFNLGKNQIYGTIPP-GIANLVNLNSLRMEANRLTGTI--PHVIGELKNLQLLHLHANFLQGTIPSSLGN 438 (1009)
Q Consensus 362 ~~~~l~~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 438 (1009)
.+..+ +.|+.|++++|.+.+.+|. .+.++++|++|++++|++++.. |..+..+++|++|++++|++++..|..|..
T Consensus 320 ~~~~l-~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 398 (606)
T 3t6q_A 320 SASNF-PSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKE 398 (606)
T ss_dssp CGGGC-TTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTT
T ss_pred hhhcc-CcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcC
Confidence 77777 5788888888888866654 4888888888999888888665 778888888888999888888888888888
Q ss_pred ccccccccccCcccccccCCC-CCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCC---CCCCccCCCC
Q 047768 439 LTLLTYLSFGANNLQGNIPFS-LGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGS---LPLGVGNLKS 514 (1009)
Q Consensus 439 l~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~---~p~~~~~l~~ 514 (1009)
+++|++|++++|++++..|.. +.++++|++|++++|.+++..|..+.....+. .|++++|++++. .+..+..+++
T Consensus 399 l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 399 CPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQ-HLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp CTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCC-EEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCC-EEECCCCCCCccccccchhhccCCC
Confidence 888888888888888776654 88888888888888888877777666555444 599999998762 3456899999
Q ss_pred CCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceeccc
Q 047768 515 LVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSY 594 (1009)
Q Consensus 515 L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~ 594 (1009)
|++|++++|++++.+|..|+.+++|+.|+|++|++++..|..+.++++| +|||++|++++.+|..+..+++|++|++++
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 9999999999999889999999999999999999999999999999999 999999999998899999999999999999
Q ss_pred ccCcccCCCC
Q 047768 595 NHFEGEVPTK 604 (1009)
Q Consensus 595 N~l~g~~p~~ 604 (1009)
|++.|.++..
T Consensus 557 N~~~c~c~~~ 566 (606)
T 3t6q_A 557 NPLDCTCSNI 566 (606)
T ss_dssp CCEECSGGGH
T ss_pred CCccccCCcH
Confidence 9999988853
No 6
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=3.9e-58 Score=576.72 Aligned_cols=523 Identities=20% Similarity=0.203 Sum_probs=452.1
Q ss_pred CccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccC-CccccCccccccccccccccCCCCCCC
Q 047768 59 HWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEI-PDRIGNLFRLETLVLANNSFSGRIPTN 137 (1009)
Q Consensus 59 ~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 137 (1009)
+|+.|-+ ...+++.|||++|.+++..+.+|.++++|++|+|++|.+.+.+ |..|+++++|++|+|++|.+++..|..
T Consensus 15 ~L~~vP~--lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~ 92 (844)
T 3j0a_A 15 NLTQVPQ--VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSKIYFLHPDA 92 (844)
T ss_dssp CSSCCCS--SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCCCCEECTTS
T ss_pred CCCCCCC--CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCcCcccCHhH
Confidence 6888877 4568999999999999999999999999999999999877777 788999999999999999999999999
Q ss_pred CcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCC-cccCCccccceeecccCcccCCCCcccccc-
Q 047768 138 LSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLP-ASIGNLSALRVIDIRTNRLWGKIPITLSQL- 215 (1009)
Q Consensus 138 l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l- 215 (1009)
|+++++|++|+|++|.+++.+|...+...+++|++|+|++|.+++..+ ..|+++++|++|+|++|.+++..+..|..+
T Consensus 93 ~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~ 172 (844)
T 3j0a_A 93 FQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQ 172 (844)
T ss_dssp SCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHH
T ss_pred ccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHccccc
Confidence 999999999999999999988876444789999999999999998765 579999999999999999999999999988
Q ss_pred -cccccccccCccCCCCCCCcccCCCh------HHHHHhhCCccCCCCChhhccCC--Ccccceecc---------cccc
Q 047768 216 -TSLAYLHVGDNHFSGTIPPSVYNISS------LVEIYLYGNRFTGSLPIEIGKNL--PNLRNFVIY---------TNNF 277 (1009)
Q Consensus 216 -~~L~~L~L~~N~l~~~~p~~~~~l~~------L~~L~L~~N~l~~~ip~~~~~~l--~~L~~L~L~---------~N~l 277 (1009)
++|+.|+|++|.+++..|..+..+++ |++|++++|++++.+|..+...+ .+++.|.++ .|++
T Consensus 173 ~~~L~~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l 252 (844)
T 3j0a_A 173 GKTLSFFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNI 252 (844)
T ss_dssp HCSSCCCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSS
T ss_pred CCccceEECCCCccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccccccccccccccc
Confidence 89999999999999989888877766 99999999999988887776543 456777766 3445
Q ss_pred CCCCCCCcCcc--cccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCC
Q 047768 278 TGSLPDSFSNA--SNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGF 355 (1009)
Q Consensus 278 ~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 355 (1009)
.+..+..|.++ ++|++|+|++|.+.+..+..|..+++|+.|+|++|.+..... +.|.++++|++|+|++|.+
T Consensus 253 ~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~------~~~~~l~~L~~L~Ls~N~l 326 (844)
T 3j0a_A 253 KDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIAD------EAFYGLDNLQVLNLSYNLL 326 (844)
T ss_dssp TTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECT------TTTTTCSSCCEEEEESCCC
T ss_pred CCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCCh------HHhcCCCCCCEEECCCCCC
Confidence 55556667665 789999999999999999999999999999999999986544 4678889999999999999
Q ss_pred CCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcc
Q 047768 356 GGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSS 435 (1009)
Q Consensus 356 ~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 435 (1009)
++..|..+..+ ..|+.|++++|++.+..+..|.++++|+.|+|++|.+++. + .+++|+.|++++|+++ .+|..
T Consensus 327 ~~~~~~~~~~l-~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~i-~----~~~~L~~L~l~~N~l~-~l~~~ 399 (844)
T 3j0a_A 327 GELYSSNFYGL-PKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTTI-H----FIPSIPDIFLSGNKLV-TLPKI 399 (844)
T ss_dssp SCCCSCSCSSC-TTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCCC-S----SCCSCSEEEEESCCCC-CCCCC
T ss_pred CccCHHHhcCC-CCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCcc-c----CCCCcchhccCCCCcc-ccccc
Confidence 98888888888 5799999999999988888899999999999999999843 2 3788999999999998 55654
Q ss_pred cccccccccccccCcccccccC-CCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccC-----CCCCCCc
Q 047768 436 LGNLTLLTYLSFGANNLQGNIP-FSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLN-----GSLPLGV 509 (1009)
Q Consensus 436 ~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~-----~~~p~~~ 509 (1009)
..+++.|++++|++++... ..+.++++|+.|++++|++++..+............|+|++|.++ +..|..|
T Consensus 400 ---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~~~~~~~~~~~~ 476 (844)
T 3j0a_A 400 ---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQLAWETELCWDVF 476 (844)
T ss_dssp ---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSSSCCSCCCSSCS
T ss_pred ---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCccccccccccchhhh
Confidence 4678899999999985321 235688999999999999997655544433444556999999997 4455678
Q ss_pred cCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCc
Q 047768 510 GNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQY 589 (1009)
Q Consensus 510 ~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~ 589 (1009)
.++++|+.|+|++|+|++.+|..|..+++|+.|+|++|+|++..|..+. ++|+.|||++|+|++.+|..|. +|+.
T Consensus 477 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~~~~~---~L~~ 551 (844)
T 3j0a_A 477 EGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNPDVFV---SLSV 551 (844)
T ss_dssp SCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCSCCCS---SCCE
T ss_pred cCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCChhHhC---CcCE
Confidence 8999999999999999999999999999999999999999987777776 8999999999999999887764 7889
Q ss_pred eecccccCcccCCCC
Q 047768 590 LNLSYNHFEGEVPTK 604 (1009)
Q Consensus 590 L~ls~N~l~g~~p~~ 604 (1009)
|++++|++.|.++..
T Consensus 552 l~l~~Np~~C~c~~~ 566 (844)
T 3j0a_A 552 LDITHNKFICECELS 566 (844)
T ss_dssp EEEEEECCCCSSSCC
T ss_pred EEecCCCcccccccH
Confidence 999999999998854
No 7
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=1.1e-58 Score=569.85 Aligned_cols=491 Identities=19% Similarity=0.220 Sum_probs=279.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCCCCCCCccCC---CCCC-CCCc------------cceeeCCCCCeEEEEEeecCCcccc
Q 047768 22 LSNETDCLSLLAIKSQLHDPLGVTSSWNRSA---CVNL-CQHW------------TGVTCGRRNQRVTKLDLRNQSIGGI 85 (1009)
Q Consensus 22 ~~~~~d~~aLl~~k~~~~~~~~~~~sW~~~~---~~~~-c~~w------------~gv~C~~~~~~v~~l~l~~~~l~~~ 85 (1009)
++..+|++||++||+++.|| +|+.++ ..++ ||.| .||+|+. .+||+.|+|++++++|.
T Consensus 265 ~~~~~d~~ALl~~k~~l~~~-----~W~~~~~~~~~~~~~C~W~~~~~~~~w~~~~GV~C~~-~~~V~~L~Ls~~~L~G~ 338 (876)
T 4ecn_A 265 AEYIKDYKALKAIWEALDGK-----NWRYYSGTINNTIHSLNWNFNKELDMWGDQPGVDLDN-NGRVTGLSLAGFGAKGR 338 (876)
T ss_dssp CHHHHHHHHHHHHHHHTTGG-----GCCCCCSSCSSCCCCCSCCCSSCGGGTTCCTTEEECT-TSCEEEEECTTTCCEEE
T ss_pred ccchHHHHHHHHHHHHcCCC-----CCCcCCCcccccCCccccccccccccccCcCceEecC-CCCEEEEECccCCCCCc
Confidence 34578999999999999887 797654 1233 2589 9999987 58999999999999999
Q ss_pred cCccccCCCCCCeeee-cCCcCCccCCcccc-------------------------------------------------
Q 047768 86 LSPYVGNLSFLRYINI-ADNDFHGEIPDRIG------------------------------------------------- 115 (1009)
Q Consensus 86 ~~~~~~~l~~L~~L~L-~~n~~~~~~p~~~~------------------------------------------------- 115 (1009)
+|++|++|++|++|+| ++|.++|..|-...
T Consensus 339 ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~l~~~~l~~~~~~~~i~ 418 (876)
T 4ecn_A 339 VPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSDLLQDAINRNPEMKPIK 418 (876)
T ss_dssp ECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCHHHHHHHHTCTTSCCCC
T ss_pred CchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhHHHHHHhhhCccccccc
Confidence 9999999999999999 88999887553311
Q ss_pred --Cccccccccccc--cccCCCCCCCCcCCCcCcEEecccccccCC-----------------CchHHhhhccCCcCeEe
Q 047768 116 --NLFRLETLVLAN--NSFSGRIPTNLSHCSKLITFSAHRNNLVGE-----------------IPEELISRRLFNLQGLS 174 (1009)
Q Consensus 116 --~l~~L~~L~Ls~--N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~-----------------~p~~~~~~~l~~L~~L~ 174 (1009)
...+++.+.++. |+++| +|..|+++++|++|+|++|++++. +|..+.+..+++|++|+
T Consensus 419 ~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~ 497 (876)
T 4ecn_A 419 KDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVE 497 (876)
T ss_dssp CCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEE
T ss_pred cccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEE
Confidence 112233333333 66665 666666666666666666666652 44443222444555555
Q ss_pred ecCccCCCCCCcccCCccccceeecccCc-ccC-CCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCcc
Q 047768 175 VGDNQLTGQLPASIGNLSALRVIDIRTNR-LWG-KIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRF 252 (1009)
Q Consensus 175 L~~n~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 252 (1009)
|++|++.+.+|..|+++++|++|+|++|+ +++ .+|..++.++ ..+..+++|++|+|++|++
T Consensus 498 Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~-----------------~~~~~l~~L~~L~Ls~N~L 560 (876)
T 4ecn_A 498 LYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLA-----------------DDEDTGPKIQIFYMGYNNL 560 (876)
T ss_dssp EESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHH-----------------HCTTTTTTCCEEECCSSCC
T ss_pred CcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhh-----------------hcccccCCccEEEeeCCcC
Confidence 55555544555445555555555555554 444 4444444333 0001111444444444444
Q ss_pred CCCCCh-hhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccc-cccccccccccCCCCC
Q 047768 253 TGSLPI-EIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKD-LSMLGLATNFLGNGAA 330 (1009)
Q Consensus 253 ~~~ip~-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~-L~~L~L~~N~l~~~~~ 330 (1009)
+ .+|. ..+.++++|+.|+|++|+++ .+| .|+++++|++|+|++|+++ ..+..|..+++ |+.|+|++|.+..++
T Consensus 561 ~-~ip~~~~l~~L~~L~~L~Ls~N~l~-~lp-~~~~L~~L~~L~Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp- 635 (876)
T 4ecn_A 561 E-EFPASASLQKMVKLGLLDCVHNKVR-HLE-AFGTNVKLTDLKLDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIP- 635 (876)
T ss_dssp C-BCCCHHHHTTCTTCCEEECTTSCCC-BCC-CCCTTSEESEEECCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCC-
T ss_pred C-ccCChhhhhcCCCCCEEECCCCCcc-cch-hhcCCCcceEEECcCCccc-cchHHHhhccccCCEEECcCCCCCcCc-
Confidence 4 4444 12233455555555555554 334 4555555555555555554 23333444444 444444444443222
Q ss_pred CCcchhhhcccc--cccceEEccCCCCCCcCchhh---hhh-cccceEEEcCCCccccCCCcc-ccCcCccCEEEccCCC
Q 047768 331 NDLDFVDLLTNC--TKLQYLYLADNGFGGVLPHSI---ANL-STALIDFNLGKNQIYGTIPPG-IANLVNLNSLRMEANR 403 (1009)
Q Consensus 331 ~~~~~~~~l~~l--~~L~~L~L~~N~l~~~~p~~~---~~l-~~~L~~L~L~~N~l~~~~p~~-~~~l~~L~~L~L~~N~ 403 (1009)
..+..+ ++|+.|+|++|++++.+|... ..+ ..+|+.|+|++|+++ .+|.. +..+++|+.|+|++|+
T Consensus 636 ------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L~-~lp~~~~~~l~~L~~L~Ls~N~ 708 (876)
T 4ecn_A 636 ------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEIQ-KFPTELFATGSPISTIILSNNL 708 (876)
T ss_dssp ------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCCC-SCCHHHHHTTCCCSEEECCSCC
T ss_pred ------hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcCC-ccCHHHHccCCCCCEEECCCCc
Confidence 122222 337777777777766554321 111 125667777777776 34433 3466777777777777
Q ss_pred CCCCCCCCcCC--------cccccceecccccccCCCCcccc--cccccccccccCcccccccCCCCCCCCCccccccCC
Q 047768 404 LTGTIPHVIGE--------LKNLQLLHLHANFLQGTIPSSLG--NLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPR 473 (1009)
Q Consensus 404 l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~~p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 473 (1009)
|+ .+|..+.. +++|++|+|++|+|+ .+|..+. .+++|+.|+|++|+|++ +|..+.++++|+.|++++
T Consensus 709 L~-~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~ 785 (876)
T 4ecn_A 709 MT-SIPENSLKPKDGNYKNTYLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRH 785 (876)
T ss_dssp CS-CCCTTSSSCTTSCCTTGGGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCC
T ss_pred CC-ccChHHhccccccccccCCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCC
Confidence 77 44443322 226777777777777 5666665 67777777777777765 566666666666655555
Q ss_pred CCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccccc
Q 047768 474 NKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTI 553 (1009)
Q Consensus 474 N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 553 (1009)
|+ ++++|++.+.+|..|+++++|+.|+|++|++ +.+|..+. ++|+.|+|++|++....
T Consensus 786 N~-------------------~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~l~~i~ 843 (876)
T 4ecn_A 786 QR-------------------DAEGNRILRQWPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNPNISID 843 (876)
T ss_dssp CB-------------------CTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCTTCEEE
T ss_pred CC-------------------CcccccccccChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCCCCccC
Confidence 53 3445555555555555555555555555555 34554443 35555555555554444
Q ss_pred ccccccccccceEcCCCccc
Q 047768 554 PQSLSSLTSIKELDLSQNNF 573 (1009)
Q Consensus 554 p~~~~~l~~L~~L~Ls~N~l 573 (1009)
+..+.....+..+.|++|.+
T Consensus 844 ~~~~~~~~~~~~~~L~~n~~ 863 (876)
T 4ecn_A 844 VTSVCPYIEAGMYVLLYDKT 863 (876)
T ss_dssp CGGGHHHHHTTCCEEECCTT
T ss_pred hHHccccccchheeecCCCc
Confidence 44444444444444444443
No 8
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=4.6e-59 Score=565.72 Aligned_cols=496 Identities=19% Similarity=0.233 Sum_probs=351.7
Q ss_pred CChhhHHHHHHHHHhcCCCC--------CCCCCCccCCCCCCCCCc---cceeeCCCCCeEEEEEeecCCcccccCcccc
Q 047768 23 SNETDCLSLLAIKSQLHDPL--------GVTSSWNRSACVNLCQHW---TGVTCGRRNQRVTKLDLRNQSIGGILSPYVG 91 (1009)
Q Consensus 23 ~~~~d~~aLl~~k~~~~~~~--------~~~~sW~~~~~~~~c~~w---~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~ 91 (1009)
....|+.||.+||+++.++. ....+|+.+ .++| .| .||+|+.. +||+.|+|++++++|.+|++++
T Consensus 27 ~~~~d~~aL~~~~~~~~~~~w~~~~~~~~~~~~W~~~--~~~c-~w~~~~GV~C~~~-~~V~~L~L~~~~l~g~lp~~l~ 102 (636)
T 4eco_A 27 EYIKDYLALKEIWDALNGKNWSQQGFGTQPGANWNFN--KELD-MWGAQPGVSLNSN-GRVTGLSLEGFGASGRVPDAIG 102 (636)
T ss_dssp HHHHHHHHHHHHHHHTTGGGCCCCC------CCCCCS--SCGG-GTTCCTTEEECTT-CCEEEEECTTSCCEEEECGGGG
T ss_pred hHHHHHHHHHHHHHHcCCCCcccCCcCCccCCCCCCC--CCcc-cccCCCCeEEcCC-CCEEEEEecCcccCCcCChHHh
Confidence 34679999999999976542 123479865 4555 89 99999865 7999999999999999999999
Q ss_pred CCCCCCeeeecCCcC------Cc------cCCccccCccccccccccccccCCCCCCCCcC-CCcCcEEecccccccCCC
Q 047768 92 NLSFLRYINIADNDF------HG------EIPDRIGNLFRLETLVLANNSFSGRIPTNLSH-CSKLITFSAHRNNLVGEI 158 (1009)
Q Consensus 92 ~l~~L~~L~L~~n~~------~~------~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~-l~~L~~L~l~~n~l~~~~ 158 (1009)
+|++|++|+|++|.+ .| .+|... +.+|+ +++++|.+.+.+|..++. +..+..+++....+..
T Consensus 103 ~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~~~~~~~~l~~~~l~~~~~~~-- 177 (636)
T 4eco_A 103 QLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPREDFSDLIKDCINSDPQQKSIKK-- 177 (636)
T ss_dssp GCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGGSCHHHHHHHHHCTTSCCCCC--
T ss_pred cCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhhHHHHHHHHhhcCcccccccc--
Confidence 999999999999987 44 566655 67888 999999999988887763 2334444444332221
Q ss_pred chHHhhhccCCcCeEeec--CccCCCCCCcccCCccccceeecccCcccCC-----------------CCcccc--cccc
Q 047768 159 PEELISRRLFNLQGLSVG--DNQLTGQLPASIGNLSALRVIDIRTNRLWGK-----------------IPITLS--QLTS 217 (1009)
Q Consensus 159 p~~~~~~~l~~L~~L~L~--~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-----------------~p~~~~--~l~~ 217 (1009)
.....++.+.+. +|++++ +|..|+++++|++|+|++|++++. +|..++ ++++
T Consensus 178 ------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~~~~~ip~~l~~~~l~~ 250 (636)
T 4eco_A 178 ------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWENENSEYAQQYKTEDLKWDNLKD 250 (636)
T ss_dssp ------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTT
T ss_pred ------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccccccchhcccCchhhhhcccCC
Confidence 112233333333 577887 788888888888888888888775 888887 8888
Q ss_pred cccccccCccCCCCCCCcccCCChHHHHHhhCCc-cCC-CCChhhcc-----CCCcccceeccccccCCCCCC--CcCcc
Q 047768 218 LAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNR-FTG-SLPIEIGK-----NLPNLRNFVIYTNNFTGSLPD--SFSNA 288 (1009)
Q Consensus 218 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~ip~~~~~-----~l~~L~~L~L~~N~l~~~~p~--~~~~l 288 (1009)
|++|+|++|++.+.+|..|.++++|++|+|++|+ ++| .+|..++. .+++|++|+|++|+++ .+|. .|+++
T Consensus 251 L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l 329 (636)
T 4eco_A 251 LTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLK-TFPVETSLQKM 329 (636)
T ss_dssp CCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCS-SCCCHHHHTTC
T ss_pred CCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCC-ccCchhhhccC
Confidence 8888888888888888888888888888888887 877 67777653 2388888888888888 6777 88888
Q ss_pred cccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccc-cceEEccCCCCCCcCchhhhhhc
Q 047768 289 SNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTK-LQYLYLADNGFGGVLPHSIANLS 367 (1009)
Q Consensus 289 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~N~l~~~~p~~~~~l~ 367 (1009)
++|++|+|++|+++|.++ .|..+++|+.|++++|.+..++ ..+.++++ |++|++++|.+
T Consensus 330 ~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp-------~~l~~l~~~L~~L~Ls~N~l------------ 389 (636)
T 4eco_A 330 KKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIP-------ANFCGFTEQVENLSFAHNKL------------ 389 (636)
T ss_dssp TTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECC-------TTSEEECTTCCEEECCSSCC------------
T ss_pred CCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCcccccc-------HhhhhhcccCcEEEccCCcC------------
Confidence 888888888888886665 6555555555555555444221 22344444 44444444444
Q ss_pred ccceEEEcCCCccccCCCccccCcC--ccCEEEccCCCCCCCCCCCcC-------CcccccceecccccccCCCCccccc
Q 047768 368 TALIDFNLGKNQIYGTIPPGIANLV--NLNSLRMEANRLTGTIPHVIG-------ELKNLQLLHLHANFLQGTIPSSLGN 438 (1009)
Q Consensus 368 ~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~~~ 438 (1009)
+ .+|..+..++ +|+.|++++|++++.+|..|. .+++|++|+|++|++++..+..+..
T Consensus 390 -------------~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~ 455 (636)
T 4eco_A 390 -------------K-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFST 455 (636)
T ss_dssp -------------S-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHT
T ss_pred -------------c-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHcc
Confidence 4 3444444433 566666666666666665555 5556666666666666332223344
Q ss_pred ccccccccccCcccccccCCCCCC--------CCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCcc
Q 047768 439 LTLLTYLSFGANNLQGNIPFSLGN--------CKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVG 510 (1009)
Q Consensus 439 l~~L~~L~L~~N~l~~~~p~~~~~--------l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~ 510 (1009)
+++|++|+|++|+++ .+|..... +++|+ .|+|++|+++ .+|..+.
T Consensus 456 l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~-------------------------~L~Ls~N~l~-~lp~~~~ 508 (636)
T 4eco_A 456 GSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLT-------------------------SIDLRFNKLT-KLSDDFR 508 (636)
T ss_dssp TCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCC-------------------------EEECCSSCCC-BCCGGGS
T ss_pred CCCCCEEECCCCCCC-CcCHHHhccccccccccCCcc-------------------------EEECcCCcCC-ccChhhh
Confidence 666666666666666 44433221 11333 3666666666 5666665
Q ss_pred --CCCCCCeeeccccccCCCccccccCCCCccEEEe------cCcccccccccccccccccceEcCCCcccccccccccc
Q 047768 511 --NLKSLVRLGIARNQFSGQIPVTLGACTSLEYVEL------QGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLE 582 (1009)
Q Consensus 511 --~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L------~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 582 (1009)
.+++|++|+|++|++++ +|..+..+++|+.|+| ++|++.+.+|.+++++++|++|||++|+| +.+|..+.
T Consensus 509 ~~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~ 586 (636)
T 4eco_A 509 ATTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT 586 (636)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC
T ss_pred hccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh
Confidence 78888888888888886 7888888888888888 56888889999999999999999999999 58888766
Q ss_pred cccccCceecccccCccc
Q 047768 583 NLSFLQYLNLSYNHFEGE 600 (1009)
Q Consensus 583 ~l~~L~~L~ls~N~l~g~ 600 (1009)
++|++|||++|++...
T Consensus 587 --~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 587 --PNISVLDIKDNPNISI 602 (636)
T ss_dssp --TTCCEEECCSCTTCEE
T ss_pred --CcCCEEECcCCCCccc
Confidence 7899999999988743
No 9
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=5.1e-57 Score=548.43 Aligned_cols=514 Identities=19% Similarity=0.186 Sum_probs=436.8
Q ss_pred CeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEec
Q 047768 70 QRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSA 149 (1009)
Q Consensus 70 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 149 (1009)
.+++.|+|++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 32 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L 111 (606)
T 3vq2_A 32 SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLTSLENLVA 111 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCTTCCEEEC
T ss_pred CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcccccChhhcCCcccCCEEEc
Confidence 57899999999999888888999999999999999999888888999999999999999999888999999999999999
Q ss_pred ccccccCCCchHHhhhccCCcCeEeecCccCCC-CCCcccCCccccceeecccCcccCCCCcccccccccc----ccccc
Q 047768 150 HRNNLVGEIPEELISRRLFNLQGLSVGDNQLTG-QLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLA----YLHVG 224 (1009)
Q Consensus 150 ~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~ 224 (1009)
++|.+.+..|..+ ..+.+|++|+|++|.+++ .+|..|+++++|++|+|++|++++..|..|+.+++|+ +|+++
T Consensus 112 ~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~~l~~L~l~ 189 (606)
T 3vq2_A 112 VETKLASLESFPI--GQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITVNDLQFLRENPQVNLSLDMS 189 (606)
T ss_dssp TTSCCCCSSSSCC--TTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECTTTTHHHHHCTTCCCEEECT
T ss_pred cCCcccccccccc--CCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecChhhhhhhhccccccceeecc
Confidence 9999986665654 678899999999999986 5688999999999999999999888888888888776 69999
Q ss_pred CccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCC------CCCCCcCccc--ccccccc
Q 047768 225 DNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTG------SLPDSFSNAS--NLEVLHL 296 (1009)
Q Consensus 225 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~------~~p~~~~~l~--~L~~L~L 296 (1009)
+|.+++..+..+. ..+|++|++++|.+++......+.++++|+.+++..+.+.+ ..+..+.++. +++.+++
T Consensus 190 ~n~l~~~~~~~~~-~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 268 (606)
T 3vq2_A 190 LNPIDFIQDQAFQ-GIKLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLEIFEPSIMEGLCDVTIDEFRL 268 (606)
T ss_dssp TCCCCEECTTTTT-TCEEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCGGGGTTGGGSEEEEEEE
T ss_pred CCCcceeCccccc-CceeeeeeccCCccchhHHHHHhccccccccccccccccccCCcccccChHHhhhhhhccHhheec
Confidence 9999855444444 44899999999988755555556678888888886655442 2222333333 3556666
Q ss_pred -cccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEc
Q 047768 297 -AENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNL 375 (1009)
Q Consensus 297 -s~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L 375 (1009)
..|.+.+..+. |..+++|+.|++++|.+..++ .+..+++|+.|++++|.+ +.+| .+ .+ ..|+.|++
T Consensus 269 ~~~~~~~~~~~~-~~~l~~L~~L~l~~~~~~~l~--------~l~~~~~L~~L~l~~n~l-~~lp-~~-~l-~~L~~L~l 335 (606)
T 3vq2_A 269 TYTNDFSDDIVK-FHCLANVSAMSLAGVSIKYLE--------DVPKHFKWQSLSIIRCQL-KQFP-TL-DL-PFLKSLTL 335 (606)
T ss_dssp CCCTTCCGGGGS-CGGGTTCSEEEEESCCCCCCC--------CCCTTCCCSEEEEESCCC-SSCC-CC-CC-SSCCEEEE
T ss_pred cccccccccccc-cccCCCCCEEEecCccchhhh--------hccccccCCEEEcccccC-cccc-cC-CC-Cccceeec
Confidence 77788887777 999999999999999987654 367788999999999999 5777 44 44 68999999
Q ss_pred CCCccccCCCccccCcCccCEEEccCCCCCCC--CCCCcCCcccccceecccccccCCCCcccccccccccccccCcccc
Q 047768 376 GKNQIYGTIPPGIANLVNLNSLRMEANRLTGT--IPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQ 453 (1009)
Q Consensus 376 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 453 (1009)
++|+..+.. .+..+++|+.|++++|++++. .|..+..+++|++|+|++|.+++ +|..+.++++|++|++++|++.
T Consensus 336 ~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~l~~n~l~ 412 (606)
T 3vq2_A 336 TMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MSANFMGLEELQHLDFQHSTLK 412 (606)
T ss_dssp ESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-ECCCCTTCTTCCEEECTTSEEE
T ss_pred cCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-chhhccCCCCCCeeECCCCccC
Confidence 999665444 677899999999999999866 48888999999999999999984 6688999999999999999999
Q ss_pred cccC-CCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCC-CCCCCccCCCCCCeeeccccccCCCccc
Q 047768 454 GNIP-FSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNG-SLPLGVGNLKSLVRLGIARNQFSGQIPV 531 (1009)
Q Consensus 454 ~~~p-~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~-~~p~~~~~l~~L~~L~ls~N~l~~~~p~ 531 (1009)
+..| ..+.++++|++|++++|++++..|..+.....+. .|++++|++++ .+|..|+.+++|++|++++|++++.+|.
T Consensus 413 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~-~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 491 (606)
T 3vq2_A 413 RVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLN-TLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWG 491 (606)
T ss_dssp STTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCC-EEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTT
T ss_pred CccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCC-EEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChh
Confidence 8877 6899999999999999999988887776665555 59999999998 4789999999999999999999999999
Q ss_pred cccCCCCccEEEecCcccccccccccccccccceEcCCCccccccccccccccc-ccCceecccccCcccCCCC
Q 047768 532 TLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLS-FLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 532 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~-~L~~L~ls~N~l~g~~p~~ 604 (1009)
.++.+++|+.|+|++|++++.+|..|+++++|++|||++|+|+ .+|..+..++ +|++|++++|++.|.++..
T Consensus 492 ~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~l~~N~~~c~c~~~ 564 (606)
T 3vq2_A 492 VFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFNLTNNSVACICEHQ 564 (606)
T ss_dssp TTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEECCSCCCCCSSTTH
T ss_pred hhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEEccCCCcccCCccH
Confidence 9999999999999999999999999999999999999999999 6888899997 5999999999999998864
No 10
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=100.00 E-value=4.1e-56 Score=540.51 Aligned_cols=531 Identities=18% Similarity=0.158 Sum_probs=454.1
Q ss_pred EEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEeccccc
Q 047768 74 KLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNN 153 (1009)
Q Consensus 74 ~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~ 153 (1009)
.++.++.+++ .+|..+. .++++|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++|++++|+
T Consensus 16 ~~~c~~~~l~-~iP~~l~--~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~ 92 (606)
T 3t6q_A 16 TYNCENLGLN-EIPGTLP--NSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIYWIHEDTFQSQHRLDTLVLTANP 92 (606)
T ss_dssp EEECTTSCCS-SCCTTSC--TTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEECCCCCcc-cCcCCCC--CcCcEEEccCCccCcCChhHhccCccceEEECCCCccceeChhhccCccccCeeeCCCCc
Confidence 4677887776 3555554 378999999999998889999999999999999999999999999999999999999999
Q ss_pred ccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCC
Q 047768 154 LVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIP 233 (1009)
Q Consensus 154 l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 233 (1009)
+++..|..+ ..+.+|++|+|++|++++..|..|+++++|++|+|++|++.+..+..+..+++|++|++++|++++..|
T Consensus 93 l~~~~~~~~--~~l~~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 170 (606)
T 3t6q_A 93 LIFMAETAL--SGPKALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSK 170 (606)
T ss_dssp CSEECTTTT--SSCTTCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECH
T ss_pred ccccChhhh--cccccccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccCh
Confidence 997777776 678999999999999998778889999999999999999987655556669999999999999997778
Q ss_pred CcccCCChHH--HHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccc-----ccccccc
Q 047768 234 PSVYNISSLV--EIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAEN-----QFRGQVS 306 (1009)
Q Consensus 234 ~~~~~l~~L~--~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N-----~l~~~~~ 306 (1009)
..|..+++|+ +|++++|+++ .++...+. ..+|+.|++++|. ..+..+.++.+++...+..+ ....+.+
T Consensus 171 ~~~~~l~~L~~l~L~l~~n~l~-~~~~~~~~-~~~L~~L~l~~~~---~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~ 245 (606)
T 3t6q_A 171 EDMSSLQQATNLSLNLNGNDIA-GIEPGAFD-SAVFQSLNFGGTQ---NLLVIFKGLKNSTIQSLWLGTFEDMDDEDISP 245 (606)
T ss_dssp HHHHTTTTCCSEEEECTTCCCC-EECTTTTT-TCEEEEEECTTCS---CHHHHHHHTTTCEEEEEECCCCTTSCCCCCCG
T ss_pred hhhhhhcccceeEEecCCCccC-ccChhHhh-hccccccccCCch---hHHHHhhhccccchhheechhhccccccccCh
Confidence 8888898888 7899999998 45555554 4689999998886 23344444444433333222 2223445
Q ss_pred ccccccc--ccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCC
Q 047768 307 INFNGLK--DLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTI 384 (1009)
Q Consensus 307 ~~f~~l~--~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~ 384 (1009)
..|.++. +|+.|++++|.+..+.. ..|.++++|++|++++|+++ .+|..+..+ ..|++|++++|++++..
T Consensus 246 ~~~~~l~~~~L~~L~l~~n~l~~~~~------~~~~~l~~L~~L~l~~n~l~-~lp~~l~~l-~~L~~L~l~~n~l~~~~ 317 (606)
T 3t6q_A 246 AVFEGLCEMSVESINLQKHYFFNISS------NTFHCFSGLQELDLTATHLS-ELPSGLVGL-STLKKLVLSANKFENLC 317 (606)
T ss_dssp GGGGGGGGSEEEEEECTTCCCSSCCT------TTTTTCTTCSEEECTTSCCS-CCCSSCCSC-TTCCEEECTTCCCSBGG
T ss_pred hHhchhhcCceeEEEeecCccCccCH------HHhccccCCCEEeccCCccC-CCChhhccc-ccCCEEECccCCcCcCc
Confidence 5566665 78999999999988765 45788999999999999999 778888777 68999999999999888
Q ss_pred CccccCcCccCEEEccCCCCCCCCCC-CcCCcccccceecccccccCCC--CcccccccccccccccCcccccccCCCCC
Q 047768 385 PPGIANLVNLNSLRMEANRLTGTIPH-VIGELKNLQLLHLHANFLQGTI--PSSLGNLTLLTYLSFGANNLQGNIPFSLG 461 (1009)
Q Consensus 385 p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 461 (1009)
|..+.++++|+.|++++|.+.+.+|. .+..+++|++|++++|++++.. |..+.++++|++|++++|++++..|..+.
T Consensus 318 ~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 397 (606)
T 3t6q_A 318 QISASNFPSLTHLSIKGNTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFK 397 (606)
T ss_dssp GGCGGGCTTCSEEECCSCSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTT
T ss_pred hhhhhccCcCCEEECCCCCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhc
Confidence 99999999999999999999976665 5999999999999999999766 78899999999999999999999999999
Q ss_pred CCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCC---ccccccCCCC
Q 047768 462 NCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQ---IPVTLGACTS 538 (1009)
Q Consensus 462 ~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~---~p~~~~~l~~ 538 (1009)
.+++|+.|++++|++++..|...+........|++++|.+++..|..++.+++|++|++++|++++. .+..+..+++
T Consensus 398 ~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~ 477 (606)
T 3t6q_A 398 ECPQLELLDLAFTRLKVKDAQSPFQNLHLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGR 477 (606)
T ss_dssp TCTTCSEEECTTCCEECCTTCCTTTTCTTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTT
T ss_pred CCccCCeEECCCCcCCCcccchhhhCcccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCC
Confidence 9999999999999999887766454445555799999999999999999999999999999999873 3367999999
Q ss_pred ccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcccCCCC-CcccCcccccccc
Q 047768 539 LEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK-GIFKNKTGFSIVG 617 (1009)
Q Consensus 539 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~ 617 (1009)
|+.|+|++|++++..|.+|+++++|++|||++|++++.+|..+..++.| +|++++|++++.+|.. +.+.++....+.+
T Consensus 478 L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 556 (606)
T 3t6q_A 478 LEILVLSFCDLSSIDQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLASNHISIILPSLLPILSQQRTINLRQ 556 (606)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCSSCCCCCCGGGHHHHHTSSEEECTT
T ss_pred ccEEECCCCccCccChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcCCcccccCHhhcccCCCCCEEeCCC
Confidence 9999999999999999999999999999999999999999999999999 9999999999887763 4456677788899
Q ss_pred CCCcCC
Q 047768 618 NGKLCG 623 (1009)
Q Consensus 618 n~~lc~ 623 (1009)
|++.|.
T Consensus 557 N~~~c~ 562 (606)
T 3t6q_A 557 NPLDCT 562 (606)
T ss_dssp CCEECS
T ss_pred CCcccc
Confidence 998884
No 11
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=100.00 E-value=2.5e-54 Score=542.24 Aligned_cols=522 Identities=19% Similarity=0.180 Sum_probs=447.9
Q ss_pred EEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCC-CCCCcCCCcCcEEeccccc
Q 047768 75 LDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRI-PTNLSHCSKLITFSAHRNN 153 (1009)
Q Consensus 75 l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~n~ 153 (1009)
.|.++++++.. |. ..++|++|||++|.+++..|..|+++++|++|||++|.+.+.+ |..|+++++|++|+|++|.
T Consensus 9 ~dcs~~~L~~v-P~---lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~N~ 84 (844)
T 3j0a_A 9 AFYRFCNLTQV-PQ---VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGSSK 84 (844)
T ss_dssp EEESCCCSSCC-CS---SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTTCC
T ss_pred EEccCCCCCCC-CC---CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCCCc
Confidence 34455667654 33 4588999999999999889999999999999999999777676 7899999999999999999
Q ss_pred ccCCCchHHhhhccCCcCeEeecCccCCCCCCcc--cCCccccceeecccCcccCCCC-cccccccccccccccCccCCC
Q 047768 154 LVGEIPEELISRRLFNLQGLSVGDNQLTGQLPAS--IGNLSALRVIDIRTNRLWGKIP-ITLSQLTSLAYLHVGDNHFSG 230 (1009)
Q Consensus 154 l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~ 230 (1009)
+.+..|..+ ..+.+|++|+|++|.+++.+|.. |+++++|++|+|++|.+.+..+ ..|+++++|++|+|++|.+++
T Consensus 85 l~~~~p~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 85 IYFLHPDAF--QGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCEECTTSS--CSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcccCHhHc--cCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 998888877 68999999999999999877665 9999999999999999987765 689999999999999999999
Q ss_pred CCCCcccCC--ChHHHHHhhCCccCCCCChhhccCCC------cccceeccccccCCCCCCCcCcc---ccccccccc--
Q 047768 231 TIPPSVYNI--SSLVEIYLYGNRFTGSLPIEIGKNLP------NLRNFVIYTNNFTGSLPDSFSNA---SNLEVLHLA-- 297 (1009)
Q Consensus 231 ~~p~~~~~l--~~L~~L~L~~N~l~~~ip~~~~~~l~------~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~Ls-- 297 (1009)
..|..+..+ ++|+.|+|++|.+++.+|..+.. ++ +|+.|++++|.+++..+..+... ++++.|+++
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n~l~~~~~~~~~~-~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~~ 241 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAANSLYSRVSVDWGK-CMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAHH 241 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCSBSCCCCCCCCCS-SSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCSS
T ss_pred eCHHHcccccCCccceEECCCCccccccccchhh-cCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceecccc
Confidence 999999888 89999999999999888766432 33 49999999999999888877654 567777776
Q ss_pred -------ccccccccccccccc--cccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcc
Q 047768 298 -------ENQFRGQVSINFNGL--KDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLST 368 (1009)
Q Consensus 298 -------~N~l~~~~~~~f~~l--~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 368 (1009)
.|.+.+.....|.++ ++|+.|++++|.+..... ..|..+++|+.|+|++|++++..|..+..+ .
T Consensus 242 ~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l-~ 314 (844)
T 3j0a_A 242 IMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNS------RVFETLKDLKVLNLAYNKINKIADEAFYGL-D 314 (844)
T ss_dssp CCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECS------CCSSSCCCCCEEEEESCCCCEECTTTTTTC-S
T ss_pred cccccccccccCCCChhhhhccccCCccEEECCCCcccccCh------hhhhcCCCCCEEECCCCcCCCCChHHhcCC-C
Confidence 445555666677776 789999999999876543 567889999999999999999888888888 6
Q ss_pred cceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCccccccccccccccc
Q 047768 369 ALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFG 448 (1009)
Q Consensus 369 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 448 (1009)
.|++|+|++|++++..|..|.++++|+.|+|++|++++..+..|..+++|++|+|++|.+++ ++ .+++|+.|+++
T Consensus 315 ~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~-i~----~~~~L~~L~l~ 389 (844)
T 3j0a_A 315 NLQVLNLSYNLLGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNALTT-IH----FIPSIPDIFLS 389 (844)
T ss_dssp SCCEEEEESCCCSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCCSCC-CS----SCCSCSEEEEE
T ss_pred CCCEEECCCCCCCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCCCCc-cc----CCCCcchhccC
Confidence 89999999999998989999999999999999999998888899999999999999999984 33 37889999999
Q ss_pred CcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCC-CccCCCCCCeeeccccccC-
Q 047768 449 ANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPL-GVGNLKSLVRLGIARNQFS- 526 (1009)
Q Consensus 449 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~- 526 (1009)
+|+++ .+|.. ..+++.+++++|++++.-........+....|+|++|++++..+. .+..+++|+.|++++|.++
T Consensus 390 ~N~l~-~l~~~---~~~l~~L~ls~N~l~~l~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~L~~L~Ls~N~l~~ 465 (844)
T 3j0a_A 390 GNKLV-TLPKI---NLTANLIHLSENRLENLDILYFLLRVPHLQILILNQNRFSSCSGDQTPSENPSLEQLFLGENMLQL 465 (844)
T ss_dssp SCCCC-CCCCC---CTTCCEEECCSCCCCSSTTHHHHTTCTTCCEEEEESCCCCCCCSSSSSCSCTTCCBCEEESCCCSS
T ss_pred CCCcc-ccccc---ccccceeecccCccccCchhhhhhcCCccceeeCCCCcccccccccccccCCccccccCCCCcccc
Confidence 99999 56654 467889999999999643333332333445699999999975544 4667899999999999997
Q ss_pred ----CCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcccCC
Q 047768 527 ----GQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVP 602 (1009)
Q Consensus 527 ----~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p 602 (1009)
+..|..|.++++|+.|+|++|+|++.+|..|+++++|+.|||++|+|++..|..+. ++|+.|||++|+|+|.+|
T Consensus 466 ~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~--~~L~~L~Ls~N~l~~~~~ 543 (844)
T 3j0a_A 466 AWETELCWDVFEGLSHLQVLYLNHNYLNSLPPGVFSHLTALRGLSLNSNRLTVLSHNDLP--ANLEILDISRNQLLAPNP 543 (844)
T ss_dssp SCCSCCCSSCSSCBCCEECCCCCHHHHTTCCTTSSSSCCSCSEEEEESCCCSSCCCCCCC--SCCCEEEEEEECCCCCCS
T ss_pred ccccccchhhhcCcccccEEECCCCcccccChhHccchhhhheeECCCCCCCccChhhhh--ccccEEECCCCcCCCCCh
Confidence 45567799999999999999999999999999999999999999999987777766 899999999999999998
Q ss_pred CCCcccCccccccccCCCcCC
Q 047768 603 TKGIFKNKTGFSIVGNGKLCG 623 (1009)
Q Consensus 603 ~~~~~~~~~~~~~~~n~~lc~ 623 (1009)
.. |.++....+.+|++.|.
T Consensus 544 ~~--~~~L~~l~l~~Np~~C~ 562 (844)
T 3j0a_A 544 DV--FVSLSVLDITHNKFICE 562 (844)
T ss_dssp CC--CSSCCEEEEEEECCCCS
T ss_pred hH--hCCcCEEEecCCCcccc
Confidence 64 66777888899999884
No 12
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=100.00 E-value=9.7e-55 Score=528.43 Aligned_cols=527 Identities=18% Similarity=0.154 Sum_probs=447.0
Q ss_pred EEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccc
Q 047768 75 LDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNL 154 (1009)
Q Consensus 75 l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l 154 (1009)
++.++++++. +|..+. ++|++|+|++|.+++..|..|+++++|++|||++|.+++..|..|+++++|++|++++|.+
T Consensus 16 ~~c~~~~l~~-ip~~~~--~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~i~~~~~~~l~~L~~L~Ls~n~l 92 (606)
T 3vq2_A 16 YQCMDQKLSK-VPDDIP--SSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIETIEDKAWHGLHHLSNLILTGNPI 92 (606)
T ss_dssp EECTTSCCSS-CCTTSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCC
T ss_pred eEccCCCccc-CCCCCC--CCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCcccccCHHHhhchhhcCEeECCCCcc
Confidence 4555566654 444443 7899999999999988888999999999999999999998899999999999999999999
Q ss_pred cCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccC-CCCcccccccccccccccCccCCCCCC
Q 047768 155 VGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWG-KIPITLSQLTSLAYLHVGDNHFSGTIP 233 (1009)
Q Consensus 155 ~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p 233 (1009)
++..|..+ ..+.+|++|+|++|++++..+..|+++++|++|++++|++.+ .+|..|+++++|++|+|++|++++..|
T Consensus 93 ~~~~p~~~--~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~~~~ 170 (606)
T 3vq2_A 93 QSFSPGSF--SGLTSLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQTITV 170 (606)
T ss_dssp CCCCTTSS--TTCTTCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCEECT
T ss_pred cccChhhc--CCcccCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCcceecCh
Confidence 98878877 679999999999999998888899999999999999999986 579999999999999999999998888
Q ss_pred CcccCCChHH----HHHhhCCccCCCCChhhccCCCcccceeccccccC-CCCCCCcCccccccccccccccccc-----
Q 047768 234 PSVYNISSLV----EIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFT-GSLPDSFSNASNLEVLHLAENQFRG----- 303 (1009)
Q Consensus 234 ~~~~~l~~L~----~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~----- 303 (1009)
..|..+++|+ +|++++|+++ .+|...+... +|+.|++++|.++ +..|..+.++++|+.+++..+.+..
T Consensus 171 ~~~~~l~~L~~~l~~L~l~~n~l~-~~~~~~~~~~-~L~~L~L~~n~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~l~ 248 (606)
T 3vq2_A 171 NDLQFLRENPQVNLSLDMSLNPID-FIQDQAFQGI-KLHELTLRGNFNSSNIMKTCLQNLAGLHVHRLILGEFKDERNLE 248 (606)
T ss_dssp TTTHHHHHCTTCCCEEECTTCCCC-EECTTTTTTC-EEEEEEEESCCSCHHHHHHHHHTTTTCEEEEEEEECCTTSCCCS
T ss_pred hhhhhhhccccccceeeccCCCcc-eeCcccccCc-eeeeeeccCCccchhHHHHHhccccccccccccccccccCCccc
Confidence 8888888776 6999999999 7888887655 8999999999987 5667788999999999987665543
Q ss_pred -cccccccccccc--ccccc-cccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCc
Q 047768 304 -QVSINFNGLKDL--SMLGL-ATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQ 379 (1009)
Q Consensus 304 -~~~~~f~~l~~L--~~L~L-~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~ 379 (1009)
.....+.++..+ +.+++ ..|.+.. ..+. +..+++|+.|++++|.+.. +| .+..+ ..|+.|++++|+
T Consensus 249 ~~~~~~~~~l~~l~l~~l~l~~~~~~~~------~~~~-~~~l~~L~~L~l~~~~~~~-l~-~l~~~-~~L~~L~l~~n~ 318 (606)
T 3vq2_A 249 IFEPSIMEGLCDVTIDEFRLTYTNDFSD------DIVK-FHCLANVSAMSLAGVSIKY-LE-DVPKH-FKWQSLSIIRCQ 318 (606)
T ss_dssp CCCGGGGTTGGGSEEEEEEECCCTTCCG------GGGS-CGGGTTCSEEEEESCCCCC-CC-CCCTT-CCCSEEEEESCC
T ss_pred ccChHHhhhhhhccHhheeccccccccc------cccc-cccCCCCCEEEecCccchh-hh-hcccc-ccCCEEEccccc
Confidence 223333333332 33333 3333322 2233 7889999999999999974 55 66666 689999999999
Q ss_pred cccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCC--CCcccccccccccccccCcccccccC
Q 047768 380 IYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGT--IPSSLGNLTLLTYLSFGANNLQGNIP 457 (1009)
Q Consensus 380 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~~~l~~L~~L~L~~N~l~~~~p 457 (1009)
+ +.+| .+ .+++|+.|++++|+..+.. .+..+++|++|++++|++++. .|..+..+++|++|++++|.+++ +|
T Consensus 319 l-~~lp-~~-~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~-~~ 392 (606)
T 3vq2_A 319 L-KQFP-TL-DLPFLKSLTLTMNKGSISF--KKVALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNGAII-MS 392 (606)
T ss_dssp C-SSCC-CC-CCSSCCEEEEESCSSCEEC--CCCCCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCSEEE-EC
T ss_pred C-cccc-cC-CCCccceeeccCCcCccch--hhccCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCcccc-ch
Confidence 9 5788 55 9999999999999765444 678999999999999999976 48889999999999999999995 77
Q ss_pred CCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCC-CccccccCC
Q 047768 458 FSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSG-QIPVTLGAC 536 (1009)
Q Consensus 458 ~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~-~~p~~~~~l 536 (1009)
..+..+++|+.|++++|++++..|...+........|++++|.+++..|..++++++|++|++++|++++ .+|..++.+
T Consensus 393 ~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l 472 (606)
T 3vq2_A 393 ANFMGLEELQHLDFQHSTLKRVTEFSAFLSLEKLLYLDISYTNTKIDFDGIFLGLTSLNTLKMAGNSFKDNTLSNVFANT 472 (606)
T ss_dssp CCCTTCTTCCEEECTTSEEESTTTTTTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTC
T ss_pred hhccCCCCCCeeECCCCccCCccChhhhhccccCCEEECcCCCCCccchhhhcCCCCCCEEECCCCcCCCcchHHhhccC
Confidence 9999999999999999999988884444334445569999999999999999999999999999999998 479999999
Q ss_pred CCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcccCCCC-Cccc-Cccccc
Q 047768 537 TSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK-GIFK-NKTGFS 614 (1009)
Q Consensus 537 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~~-~~~~~~ 614 (1009)
++|+.|+|++|++++.+|..|+++++|++|+|++|++++.+|..|..+++|++|+|++|+++ .+|.. ..+. ++....
T Consensus 473 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~l~-~~p~~~~~l~~~L~~l~ 551 (606)
T 3vq2_A 473 TNLTFLDLSKCQLEQISWGVFDTLHRLQLLNMSHNNLLFLDSSHYNQLYSLSTLDCSFNRIE-TSKGILQHFPKSLAFFN 551 (606)
T ss_dssp TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCEEGGGTTTCTTCCEEECTTSCCC-CEESCGGGSCTTCCEEE
T ss_pred CCCCEEECCCCcCCccChhhhcccccCCEEECCCCcCCCcCHHHccCCCcCCEEECCCCcCc-ccCHhHhhhcccCcEEE
Confidence 99999999999999999999999999999999999999999999999999999999999999 45543 3333 366678
Q ss_pred cccCCCcCCCC
Q 047768 615 IVGNGKLCGGL 625 (1009)
Q Consensus 615 ~~~n~~lc~~~ 625 (1009)
+.+|++.|+.+
T Consensus 552 l~~N~~~c~c~ 562 (606)
T 3vq2_A 552 LTNNSVACICE 562 (606)
T ss_dssp CCSCCCCCSST
T ss_pred ccCCCcccCCc
Confidence 89999998644
No 13
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=1.2e-52 Score=503.77 Aligned_cols=492 Identities=16% Similarity=0.174 Sum_probs=406.6
Q ss_pred CccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCC
Q 047768 59 HWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNL 138 (1009)
Q Consensus 59 ~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l 138 (1009)
.|.|| |+. ++++++ .+|+.+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|
T Consensus 5 ~~~~~-c~~----------~~~~l~-~ip~~~~--~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~ 70 (549)
T 2z81_A 5 DASGV-CDG----------RSRSFT-SIPSGLT--AAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAF 70 (549)
T ss_dssp CTTSE-EEC----------TTSCCS-SCCSCCC--TTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTT
T ss_pred CCCce-EEC----------CCCccc-cccccCC--CCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhc
Confidence 79998 853 345555 3455554 789999999999998889999999999999999999999889999
Q ss_pred cCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCC-CCCcccCCccccceeecccCcccCCC-Cccccccc
Q 047768 139 SHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTG-QLPASIGNLSALRVIDIRTNRLWGKI-PITLSQLT 216 (1009)
Q Consensus 139 ~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~ 216 (1009)
+++++|++|++++|++++..|..+ ..+.+|++|+|++|++++ ..|..|+++++|++|++++|++.+.+ +..|.+++
T Consensus 71 ~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~ 148 (549)
T 2z81_A 71 YSLGSLEHLDLSDNHLSSLSSSWF--GPLSSLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLT 148 (549)
T ss_dssp TTCTTCCEEECTTSCCCSCCHHHH--TTCTTCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCC
T ss_pred cccccCCEEECCCCccCccCHHHh--ccCCCCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhccc
Confidence 999999999999999997776666 679999999999999997 35788999999999999999954444 47899999
Q ss_pred ccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCC--C-CCcCccccccc
Q 047768 217 SLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSL--P-DSFSNASNLEV 293 (1009)
Q Consensus 217 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~--p-~~~~~l~~L~~ 293 (1009)
+|++|++++|++++..|..+..+++|++|++++|.+. .+|..++..+++|++|++++|++++.. | .....+++|+.
T Consensus 149 ~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~ 227 (549)
T 2z81_A 149 SLNELEIKALSLRNYQSQSLKSIRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKK 227 (549)
T ss_dssp EEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCE
T ss_pred ccCeeeccCCcccccChhhhhccccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccc
Confidence 9999999999999999999999999999999999997 888888778999999999999999753 2 23456889999
Q ss_pred cccccccccccccc----ccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCc----hhhhh
Q 047768 294 LHLAENQFRGQVSI----NFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLP----HSIAN 365 (1009)
Q Consensus 294 L~Ls~N~l~~~~~~----~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p----~~~~~ 365 (1009)
|++++|++++..+. .+..+++|+.+++++|.+...........+.+..+++|+.|++.++.+..... ..+..
T Consensus 228 L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~ 307 (549)
T 2z81_A 228 LAFRGSVLTDESFNELLKLLRYILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYS 307 (549)
T ss_dssp EEEESCEEEHHHHHHHHGGGGGCTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHH
T ss_pred eeccccccchhHHHHHHHHhhhhccccccccccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhh
Confidence 99999999875443 34667889999999998876543222223456778899999999998764210 11223
Q ss_pred hcccceEEEcCCCccccCCCccc-cCcCccCEEEccCCCCCCCCC---CCcCCcccccceecccccccCCCC--cccccc
Q 047768 366 LSTALIDFNLGKNQIYGTIPPGI-ANLVNLNSLRMEANRLTGTIP---HVIGELKNLQLLHLHANFLQGTIP--SSLGNL 439 (1009)
Q Consensus 366 l~~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l 439 (1009)
....|+.|++++|++. .+|..+ .++++|++|+|++|++++.+| ..++.+++|++|+|++|++++..+ ..+..+
T Consensus 308 ~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l 386 (549)
T 2z81_A 308 LLEKVKRITVENSKVF-LVPCSFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL 386 (549)
T ss_dssp HSTTCCEEEEESSCCC-CCCHHHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC
T ss_pred hcccceEEEeccCccc-cCCHHHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC
Confidence 3467899999999987 666665 579999999999999987664 447889999999999999986433 458889
Q ss_pred cccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeee
Q 047768 440 TLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLG 519 (1009)
Q Consensus 440 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ 519 (1009)
++|++|++++|+++ .+|..+..+++|++|++++|+++ .+|..+ .++|++|+
T Consensus 387 ~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~L~Ls~N~l~--------------------------~l~~~~--~~~L~~L~ 437 (549)
T 2z81_A 387 KNLTSLDISRNTFH-PMPDSCQWPEKMRFLNLSSTGIR--------------------------VVKTCI--PQTLEVLD 437 (549)
T ss_dssp TTCCEEECTTCCCC-CCCSCCCCCTTCCEEECTTSCCS--------------------------CCCTTS--CTTCSEEE
T ss_pred CCCCEEECCCCCCc-cCChhhcccccccEEECCCCCcc--------------------------cccchh--cCCceEEE
Confidence 99999999999998 68888888888887666666655 223222 25789999
Q ss_pred ccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcc
Q 047768 520 IARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEG 599 (1009)
Q Consensus 520 ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g 599 (1009)
+++|+|++.+ ..+++|++|+|++|+|+ .+|. .+.+++|++|||++|+|++.+|..+..+++|++|++++|++.|
T Consensus 438 Ls~N~l~~~~----~~l~~L~~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 511 (549)
T 2z81_A 438 VSNNNLDSFS----LFLPRLQELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDC 511 (549)
T ss_dssp CCSSCCSCCC----CCCTTCCEEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCC
T ss_pred CCCCChhhhc----ccCChhcEEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccC
Confidence 9999998643 57889999999999998 6776 5789999999999999999888889999999999999999999
Q ss_pred cCCC
Q 047768 600 EVPT 603 (1009)
Q Consensus 600 ~~p~ 603 (1009)
.+|.
T Consensus 512 ~~~~ 515 (549)
T 2z81_A 512 SCPR 515 (549)
T ss_dssp CHHH
T ss_pred CCcc
Confidence 9885
No 14
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=7.3e-52 Score=499.60 Aligned_cols=495 Identities=19% Similarity=0.185 Sum_probs=320.2
Q ss_pred CeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEec
Q 047768 70 QRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSA 149 (1009)
Q Consensus 70 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 149 (1009)
.+++.|+|++|.+++..+.+|.++++|++|+|++|++++..|..|+++++|++|+|++|.+++..|..|+++++|++|++
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 107 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVA 107 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEEC
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhhcCccccccccc
Confidence 35677777777777766667777777777777777777666666777777777777777777666677777777777777
Q ss_pred ccccccCCCchHHhhhccCCcCeEeecCccCCC-CCCcccCCccccceeecccCcccCCCCccccccccc----cccccc
Q 047768 150 HRNNLVGEIPEELISRRLFNLQGLSVGDNQLTG-QLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSL----AYLHVG 224 (1009)
Q Consensus 150 ~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L----~~L~L~ 224 (1009)
++|++++..+..+ ..+.+|++|++++|.+++ .+|..|+++++|++|++++|++++..|..|+.+++| ++|+++
T Consensus 108 ~~n~l~~l~~~~~--~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~~L~l~ 185 (570)
T 2z63_A 108 VETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLS 185 (570)
T ss_dssp TTSCCCCSTTCSC--TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCCEEECT
T ss_pred cccccccCCCccc--cccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhhhcccC
Confidence 7777664333232 456777777777777765 356677777777777777777766666667776666 667777
Q ss_pred CccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccC------CCCCCCcCcccc--cccccc
Q 047768 225 DNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFT------GSLPDSFSNASN--LEVLHL 296 (1009)
Q Consensus 225 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~------~~~p~~~~~l~~--L~~L~L 296 (1009)
+|.+++..|..|..+ +|++|++++|......-.....++++++.+.+..+.+. ......|.++++ ++.+++
T Consensus 186 ~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~~l~l 264 (570)
T 2z63_A 186 LNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRL 264 (570)
T ss_dssp TCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEEEEEE
T ss_pred CCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchhhhhh
Confidence 777775555555544 66677776664432211222334555554444332221 122223333322 333444
Q ss_pred ccc-ccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEc
Q 047768 297 AEN-QFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNL 375 (1009)
Q Consensus 297 s~N-~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L 375 (1009)
++| .+.+..+..|..+ ++|+.|++++|.++ .+|..+..+ .|+.|++
T Consensus 265 ~~~~~~~~~~~~~~~~l------------------------------~~L~~L~l~~~~l~-~l~~~~~~~--~L~~L~l 311 (570)
T 2z63_A 265 AYLDYYLDDIIDLFNCL------------------------------TNVSSFSLVSVTIE-RVKDFSYNF--GWQHLEL 311 (570)
T ss_dssp EETTEEESCSTTTTGGG------------------------------TTCSEEEEESCEEC-SCCBCCSCC--CCSEEEE
T ss_pred hcchhhhhhchhhhcCc------------------------------CcccEEEecCccch-hhhhhhccC--CccEEee
Confidence 444 4444444444444 44555555555444 234434333 4555555
Q ss_pred CCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCC--CcccccccccccccccCcccc
Q 047768 376 GKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTI--PSSLGNLTLLTYLSFGANNLQ 453 (1009)
Q Consensus 376 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~L~L~~N~l~ 453 (1009)
++|.+. .+|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|.++
T Consensus 312 ~~n~~~-~l~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~ 386 (570)
T 2z63_A 312 VNCKFG-QFPT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVI 386 (570)
T ss_dssp ESCBCS-SCCB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEE
T ss_pred ccCccc-ccCc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCccc
Confidence 555554 3332 2445555555555555544433 44555555555555555332 444555555555555555555
Q ss_pred cccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccC-CCcccc
Q 047768 454 GNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFS-GQIPVT 532 (1009)
Q Consensus 454 ~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~-~~~p~~ 532 (1009)
+..+. +..+++|+.|++++|.+++..|...+........|++++|.+.+..|..+.++++|++|++++|.++ +.+|..
T Consensus 387 ~~~~~-~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~ 465 (570)
T 2z63_A 387 TMSSN-FLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI 465 (570)
T ss_dssp EEEEE-EETCTTCCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC
T ss_pred ccccc-ccccCCCCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh
Confidence 43332 5555555555555555554444322222233335888888888888889999999999999999998 679999
Q ss_pred ccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcccCCCCCc
Q 047768 533 LGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGI 606 (1009)
Q Consensus 533 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~ 606 (1009)
+..+++|+.|+|++|++++..|.+|+++++|++|+|++|++++.+|..|..+++|++|++++|+++|.+|....
T Consensus 466 ~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~~~~ 539 (570)
T 2z63_A 466 FTELRNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRIDY 539 (570)
T ss_dssp CTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTHH
T ss_pred hhcccCCCEEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCCcchHH
Confidence 99999999999999999998899999999999999999999998888899999999999999999999997543
No 15
>3omv_A RAF proto-oncogene serine/threonine-protein kinas; serine/threonine-protein kinase, transferase; HET: SM5; 4.00A {Homo sapiens}
Probab=100.00 E-value=1.5e-51 Score=446.05 Aligned_cols=265 Identities=27% Similarity=0.419 Sum_probs=205.9
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.+++.+.++||+|+||+||+|+++ ..||||+++.... ...+.|.+|+++|++++|||||+++|+|.. +.
T Consensus 35 ~~~l~l~~~iG~G~fG~Vy~~~~~---~~vAvK~~~~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~------~~ 105 (307)
T 3omv_A 35 ASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK------DN 105 (307)
T ss_dssp TTSCCEEEECCCCSSSEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------SS
T ss_pred HHHeEEeeEEeeCCCcEEEEEEEC---CcEEEEEEEecCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEC------Ce
Confidence 457788899999999999999875 2599999874432 234679999999999999999999999753 35
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++|||||++|+|.++++.... .+++.++..|+.|+|+||+|||++ +||||||||+|||+++++++||+|||
T Consensus 106 ~~iVmEy~~gGsL~~~l~~~~~-----~l~~~~~~~i~~qia~gL~yLH~~---~IiHRDlKp~NILl~~~~~~Ki~DFG 177 (307)
T 3omv_A 106 LAIVTQWCEGSSLYKHLHVQET-----KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFG 177 (307)
T ss_dssp CEEEEECCSSCBHHHHHHTSCC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCCSSSEEEETTEEEEECCCS
T ss_pred EEEEEEcCCCCCHHHHHhhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCccCHHHEEECCCCcEEEeecc
Confidence 7899999999999999986543 399999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCC---CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG---GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
+|+....... ........||+.|||||++.+ +.|+.++|||||||++|||+||+.||....... ......
T Consensus 178 la~~~~~~~~------~~~~~~~~GT~~ymAPE~l~~~~~~~y~~ksDVwS~Gvvl~Elltg~~Pf~~~~~~~-~~~~~~ 250 (307)
T 3omv_A 178 LATVKSRWSG------SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRD-QIIFMV 250 (307)
T ss_dssp SCBC------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHH-HHHHHH
T ss_pred CceecccCCc------ceeecccccCCCccCHHHhhccCCCCCCcHHHhHhHHHHHHHHHHCCCCCCCCChHH-HHHHHH
Confidence 9987654221 122334679999999999864 468999999999999999999999997543221 111111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
... ...+.+.. ....++.++.+++.+||+.||++||||+||++.|+.++..++.
T Consensus 251 ~~~-------~~~p~~~~-----------~~~~~~~~l~~li~~cl~~dP~~RPs~~ei~~~Le~l~~~lpk 304 (307)
T 3omv_A 251 GRG-------YASPDLSK-----------LYKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp HTT-------CCCCCSTT-----------SCTTSCHHHHHHHHHHTCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred hcC-------CCCCCccc-----------ccccchHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhccCCC
Confidence 110 01111110 1123456788999999999999999999999999998877653
No 16
>4asz_A BDNF/NT-3 growth factors receptor; transferase, TRKA, TRKB; 1.70A {Homo sapiens} PDB: 4at3_A* 4at4_A* 4at5_A* 3v5q_A*
Probab=100.00 E-value=1.9e-51 Score=445.71 Aligned_cols=266 Identities=24% Similarity=0.388 Sum_probs=212.6
Q ss_pred ccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
++|.+.+.||+|+||+||+|++. .+++.||||+++.......++|.+|+++|++++|||||+++|+|...
T Consensus 13 ~~~~l~~~lG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~----- 87 (299)
T 4asz_A 13 HNIVLKRELGEGAFGKVFLAECYNLCPEQDKILVAVKTLKDASDNARKDFHREAELLTNLQHEHIVKFYGVCVEG----- 87 (299)
T ss_dssp GGEEEEEEEEC--CCCEEEEEECSCC----CEEEEEEEECSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-----
T ss_pred HHeEEeeEEeeCCCcEEEEEEECCcccCCCCEEEEEEEeCCCChHHHHHHHHHHHHHHhCCCCCCccEEEEEeeC-----
Confidence 56888899999999999999975 35789999999765544567899999999999999999999998653
Q ss_pred ceEEEEEeccCCCCHHHHHhccCC-------CCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDD-------QLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD 848 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~-------~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~ 848 (1009)
+..++|||||++|+|.++++.... ......++|.++..|+.|+|+||+|||++ +||||||||+|||++++
T Consensus 88 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDlKp~NILl~~~ 164 (299)
T 4asz_A 88 DPLIMVFEYMKHGDLNKFLRAHGPDAVLMAEGNPPTELTQSQMLHIAQQIAAGMVYLASQ---HFVHRDLATRNCLVGEN 164 (299)
T ss_dssp SSEEEEEECCTTCBHHHHHHHTSHHHHHC----CCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGG
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccCCCCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCccCHhhEEECCC
Confidence 678999999999999999986531 11123599999999999999999999999 99999999999999999
Q ss_pred CceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCC
Q 047768 849 MVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEG 927 (1009)
Q Consensus 849 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~ 927 (1009)
+++||+|||+|+....... ........||+.|||||++.+..|+.++|||||||++|||+| |+.||.....
T Consensus 165 ~~~Ki~DFGla~~~~~~~~------~~~~~~~~gt~~ymAPE~~~~~~~~~k~DVwS~Gvvl~Ellt~G~~Pf~~~~~-- 236 (299)
T 4asz_A 165 LLVKIGDFGMSRDVYSTDY------YRVGGHTMLPIRWMPPESIMYRKFTTESDVWSLGVVLWEIFTYGKQPWYQLSN-- 236 (299)
T ss_dssp GCEEECCCSCHHHHTGGGC------EEETTTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCH--
T ss_pred CcEEECCcccceecCCCCc------eeecCceecChhhcCHHHHcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCCCH--
Confidence 9999999999987654321 112233568999999999999999999999999999999999 8999975432
Q ss_pred ccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 928 LTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
.+...... ....... +..++.++.+++.+||+.||++||||+||++.|+.+.+.-
T Consensus 237 ---~~~~~~i~--------~~~~~~~-----------p~~~~~~~~~li~~cl~~dP~~RPs~~~i~~~L~~~~~~~ 291 (299)
T 4asz_A 237 ---NEVIECIT--------QGRVLQR-----------PRTCPQEVYELMLGCWQREPHMRKNIKGIHTLLQNLAKAS 291 (299)
T ss_dssp ---HHHHHHHH--------HTCCCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHS
T ss_pred ---HHHHHHHH--------cCCCCCC-----------CccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhcC
Confidence 12211111 1011111 1234557889999999999999999999999999887653
No 17
>4aoj_A High affinity nerve growth factor receptor; transferase, inhibitor; HET: V4Z; 2.75A {Homo sapiens}
Probab=100.00 E-value=8.8e-51 Score=446.80 Aligned_cols=265 Identities=26% Similarity=0.409 Sum_probs=206.7
Q ss_pred ccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
++|.+.++||+|+||+||+|+++ .+++.||||+++.......+.|.+|+++|++++|||||+++|+|...
T Consensus 41 ~d~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~~~vAvK~l~~~~~~~~~~f~~E~~il~~l~HpnIV~l~g~~~~~----- 115 (329)
T 4aoj_A 41 RDIVLKWELGEGAFGKVFLAECHNLLPEQDKMLVAVKALKEASESARQDFQREAELLTMLQHQHIVRFFGVCTEG----- 115 (329)
T ss_dssp GGEEEEEEEEECSSEEEEEEEESSSCC---CEEEEEEEESCCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEECSS-----
T ss_pred HHeEEEEEEccCCCcEEEEEEECCcccCCCCeEEEEEEECcCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-----
Confidence 46777889999999999999975 35789999999765544567899999999999999999999998653
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCC---------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQL---------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD 846 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~---------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~ 846 (1009)
...++|||||++|+|.++++...... ...+++|.++..|+.|+|+||+|||++ +||||||||+|||++
T Consensus 116 ~~~~lV~Ey~~~G~L~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLKp~NILl~ 192 (329)
T 4aoj_A 116 RPLLMVFEYMRHGDLNRFLRSHGPDAKLLAGGEDVAPGPLGLGQLLAVASQVAAGMVYLAGL---HFVHRDLATRNCLVG 192 (329)
T ss_dssp SSEEEEEECCTTCBHHHHHHTSSCC-----------CCSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEE
T ss_pred CEEEEEEEcCCCCcHHHHHHhcCcccccccccccccCCCCCHHHHHHHHHHHHHHHHHHhcC---CeecccccHhhEEEC
Confidence 67899999999999999998754221 123599999999999999999999999 999999999999999
Q ss_pred CCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCccccc
Q 047768 847 HDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFN 925 (1009)
Q Consensus 847 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~ 925 (1009)
+++++||+|||+|+....... ........||+.|||||++.+..|+.++|||||||++|||+| |+.||.....
T Consensus 193 ~~~~~Ki~DFGla~~~~~~~~------~~~~~~~~gt~~ymAPE~~~~~~~~~~sDvwS~Gvvl~Ellt~G~~Pf~~~~~ 266 (329)
T 4aoj_A 193 QGLVVKIGDFGMSRDIYSTDY------YRVGGRTMLPIRWMPPESILYRKFTTESDVWSFGVVLWEIFTYGKQPWYQLSN 266 (329)
T ss_dssp TTTEEEECCCC----------------------CCCCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHTTSCCTTCSSCH
T ss_pred CCCcEEEcccccceeccCCCc------ceecCcccccccccChhhhcCCCCCccccccchHHHHHHHHcCCCCCCCCCCH
Confidence 999999999999987654321 122234679999999999999999999999999999999999 8999975432
Q ss_pred CCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 926 EGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
.+..... ....... .+..+++++.+++.+||+.||++||||+||++.|+.+.+.
T Consensus 267 -----~~~~~~i--------~~g~~~~-----------~p~~~~~~~~~li~~cl~~dP~~RPs~~ei~~~L~~l~~~ 320 (329)
T 4aoj_A 267 -----TEAIDCI--------TQGRELE-----------RPRACPPEVYAIMRGCWQREPQQRHSIKDVHARLQALAQA 320 (329)
T ss_dssp -----HHHHHHH--------HHTCCCC-----------CCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHHHHHHHHHS
T ss_pred -----HHHHHHH--------HcCCCCC-----------CcccccHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHhhC
Confidence 1111111 0000000 1113455788999999999999999999999999998764
No 18
>4gt4_A Tyrosine-protein kinase transmembrane receptor RO; ATP binding, phosphorylation, transferase; 2.41A {Homo sapiens} PDB: 3zzw_A
Probab=100.00 E-value=1.6e-50 Score=440.51 Aligned_cols=262 Identities=25% Similarity=0.378 Sum_probs=209.1
Q ss_pred ccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
.++.+.++||+|+||+||+|++. .+++.||||+++.... ...+.|.+|+.++++++|||||+++|+|...
T Consensus 26 ~~~~~~~~lG~G~fG~Vykg~~~~~~~~~~~~~VAvK~l~~~~~~~~~~~f~~E~~il~~l~HpNIV~l~g~~~~~---- 101 (308)
T 4gt4_A 26 SAVRFMEELGEDRFGKVYKGHLFGPAPGEQTQAVAIKTLKDKAEGPLREEFRHEAMLRARLQHPNVVCLLGVVTKD---- 101 (308)
T ss_dssp GGEEEEEEEEECSSCEEEEEEEC-------CEEEEEEECCC-CCC-CHHHHHHHHHHHHHCCCTTBCCEEEEECSS----
T ss_pred HHCeEeeEeccCCCcEEEEEEEcCCccCCCCeEEEEEEECcccChHHHHHHHHHHHHHHhCCCCCCCCcceEEEEC----
Confidence 35667789999999999999974 3578999999965433 2357899999999999999999999998653
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCC----------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCcee
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQL----------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVL 844 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~----------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nil 844 (1009)
...++|||||++|+|.+++..+.... ....++|.++..|+.|||+||+|||++ +||||||||+|||
T Consensus 102 -~~~~lV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qia~gl~yLH~~---~iiHRDLK~~NIL 177 (308)
T 4gt4_A 102 -QPLSMIFSYCSHGDLHEFLVMRSPHSDVGSTDDDRTVKSALEPPDFVHLVAQIAAGMEYLSSH---HVVHKDLATRNVL 177 (308)
T ss_dssp -SSCEEEEECCSSCBHHHHHHTTCSSCCCC-----CCEECCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEE
T ss_pred -CEEEEEEEcCCCCcHHHHHHhhCccccccccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCccccceE
Confidence 56799999999999999997653211 123589999999999999999999999 9999999999999
Q ss_pred eCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCccc
Q 047768 845 LDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESM 923 (1009)
Q Consensus 845 l~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~ 923 (1009)
+++++++||+|||+|+....... ........||+.|||||++.++.|+.++|||||||++|||+| |+.||...
T Consensus 178 l~~~~~~Ki~DFGlar~~~~~~~------~~~~~~~~gt~~ymAPE~l~~~~~s~ksDVwSfGvvl~El~t~g~~Pf~~~ 251 (308)
T 4gt4_A 178 VYDKLNVKISDLGLFREVYAADY------YKLLGNSLLPIRWMAPEAIMYGKFSIDSDIWSYGVVLWEVFSYGLQPYCGY 251 (308)
T ss_dssp ECGGGCEEECCSCCBCGGGGGGC------BCSSSSSCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTC
T ss_pred ECCCCCEEECCcccceeccCCCc------eeEecccccCCcccCHHHHhCCCCCccchhhhHHHHHHHHHhCCCCCCCCC
Confidence 99999999999999987654321 122334679999999999999999999999999999999999 89999754
Q ss_pred ccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Q 047768 924 FNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHA 1000 (1009)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i 1000 (1009)
.. .+..... .+....+. +..++.++.+++.+||+.||++||||+||++.|+..
T Consensus 252 ~~-----~~~~~~i--------~~~~~~~~-----------p~~~~~~~~~li~~C~~~dP~~RPs~~ei~~~L~a~ 304 (308)
T 4gt4_A 252 SN-----QDVVEMI--------RNRQVLPC-----------PDDCPAWVYALMIECWNEFPSRRPRFKDIHSRLRAW 304 (308)
T ss_dssp CH-----HHHHHHH--------HTTCCCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTS
T ss_pred CH-----HHHHHHH--------HcCCCCCC-----------cccchHHHHHHHHHHcCCChhHCcCHHHHHHHHHhc
Confidence 32 2221111 11111111 124556788999999999999999999999999753
No 19
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=100.00 E-value=2e-49 Score=478.23 Aligned_cols=497 Identities=19% Similarity=0.158 Sum_probs=372.6
Q ss_pred CCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeE
Q 047768 94 SFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGL 173 (1009)
Q Consensus 94 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L 173 (1009)
+++++|+|++|++++..|..|.++++|++|||++|++++..|..|+++++|++|++++|.+++..|..+ ..+.+|++|
T Consensus 28 ~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L 105 (570)
T 2z63_A 28 FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAF--SGLSSLQKL 105 (570)
T ss_dssp SSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTT--TTCTTCCEE
T ss_pred ccccEEEccCCccCccChhHhhCCCCceEEECCCCcCCccCcccccCchhCCEEeCcCCcCCccCHhhh--cCccccccc
Confidence 578999999999998778889999999999999999998778889888888888888888775444444 456777777
Q ss_pred eecCccCCCCCCcccCCccccceeecccCcccC-CCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCcc
Q 047768 174 SVGDNQLTGQLPASIGNLSALRVIDIRTNRLWG-KIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRF 252 (1009)
Q Consensus 174 ~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 252 (1009)
++++|++++..+..|+++++|++|++++|.+.+ .+|..|+++++|++|++++|++++..|..+..+++|..
T Consensus 106 ~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~-------- 177 (570)
T 2z63_A 106 VAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPL-------- 177 (570)
T ss_dssp ECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTT--------
T ss_pred cccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccch--------
Confidence 777777775555557777777777777777765 35666777777777777777776555555555444400
Q ss_pred CCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccc-ccccccccccccccccccccccCCCCCC
Q 047768 253 TGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRG-QVSINFNGLKDLSMLGLATNFLGNGAAN 331 (1009)
Q Consensus 253 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~-~~~~~f~~l~~L~~L~L~~N~l~~~~~~ 331 (1009)
..+.|++++|.+++..|..|..+ +|+.|++++|.... ..+..+.++++++.+.+..+.+.....-
T Consensus 178 -------------~~~~L~l~~n~l~~~~~~~~~~~-~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l 243 (570)
T 2z63_A 178 -------------LNLSLDLSLNPMNFIQPGAFKEI-RLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNL 243 (570)
T ss_dssp -------------CCCEEECTTCCCCEECTTTTTTC-EEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSC
T ss_pred -------------hhhhcccCCCCceecCHHHhccC-cceeEecccccccccchhhhhcCccccceeeeccccccCchhh
Confidence 00344444454444444444443 45555555543221 1222233344443333332221111000
Q ss_pred Ccchhhhccccc--ccceEEccCC-CCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCC
Q 047768 332 DLDFVDLLTNCT--KLQYLYLADN-GFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTI 408 (1009)
Q Consensus 332 ~~~~~~~l~~l~--~L~~L~L~~N-~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 408 (1009)
..-....+..+. .++.+++++| .+.+..|..+..+ ..|+.|++++|.++ .+|..+..+ +|+.|++++|.+. .+
T Consensus 244 ~~~~~~~~~~l~~l~l~~l~l~~~~~~~~~~~~~~~~l-~~L~~L~l~~~~l~-~l~~~~~~~-~L~~L~l~~n~~~-~l 319 (570)
T 2z63_A 244 EKFDKSALEGLCNLTIEEFRLAYLDYYLDDIIDLFNCL-TNVSSFSLVSVTIE-RVKDFSYNF-GWQHLELVNCKFG-QF 319 (570)
T ss_dssp EECCTTTTGGGGGSEEEEEEEEETTEEESCSTTTTGGG-TTCSEEEEESCEEC-SCCBCCSCC-CCSEEEEESCBCS-SC
T ss_pred hhcchhhhccccccchhhhhhhcchhhhhhchhhhcCc-CcccEEEecCccch-hhhhhhccC-CccEEeeccCccc-cc
Confidence 000001122222 4678888888 7888888888887 68999999999999 688889999 9999999999999 56
Q ss_pred CCCcCCcccccceecccccccCCCCcccccccccccccccCccccccc--CCCCCCCCCccccccCCCCccCCCchhhhh
Q 047768 409 PHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNI--PFSLGNCKNLMFFFAPRNKLTGALPQQILE 486 (1009)
Q Consensus 409 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~--p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~ 486 (1009)
|. ..+++|+.|++++|.+.+..+. ..+++|++|++++|++++.. |..+.++++|++|++++|.+++..+. +..
T Consensus 320 ~~--~~l~~L~~L~l~~n~~~~~~~~--~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~-~~~ 394 (570)
T 2z63_A 320 PT--LKLKSLKRLTFTSNKGGNAFSE--VDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSN-FLG 394 (570)
T ss_dssp CB--CBCSSCCEEEEESCBSCCBCCC--CBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEE-EET
T ss_pred Cc--ccccccCEEeCcCCcccccccc--ccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccc-ccc
Confidence 65 5789999999999999877665 78999999999999998654 77888999999999999999965444 444
Q ss_pred hccceeeEecCCCccCCCCC-CCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccc-cccccccccccccc
Q 047768 487 ITTLSLSLDLSDNLLNGSLP-LGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFS-GTIPQSLSSLTSIK 564 (1009)
Q Consensus 487 ~~~~~~~L~Ls~N~l~~~~p-~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~~p~~~~~l~~L~ 564 (1009)
... ...|++++|.+.+..| ..+.++++|++|++++|.+++.+|..+..+++|+.|+|++|+++ +.+|..++.+++|+
T Consensus 395 l~~-L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~ 473 (570)
T 2z63_A 395 LEQ-LEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLT 473 (570)
T ss_dssp CTT-CCEEECTTSEEESCTTSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCC
T ss_pred cCC-CCEEEccCCccccccchhhhhcCCCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhhhhcccCCC
Confidence 444 4469999999998776 56899999999999999999999999999999999999999998 68999999999999
Q ss_pred eEcCCCcccccccccccccccccCceecccccCcccCCCC-CcccCccccccccCCCcCCC
Q 047768 565 ELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK-GIFKNKTGFSIVGNGKLCGG 624 (1009)
Q Consensus 565 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~~~~~~~~~~~n~~lc~~ 624 (1009)
+|+|++|++++..|..|..+++|++|++++|++++.+|.. ..+.++....+.+|+..|.-
T Consensus 474 ~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~ 534 (570)
T 2z63_A 474 FLDLSQCQLEQLSPTAFNSLSSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSC 534 (570)
T ss_dssp EEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCT
T ss_pred EEECCCCccccCChhhhhcccCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCcccCCC
Confidence 9999999999988999999999999999999999887753 45667777888899988753
No 20
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.8e-50 Score=481.26 Aligned_cols=459 Identities=18% Similarity=0.218 Sum_probs=311.5
Q ss_pred EEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccc
Q 047768 73 TKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRN 152 (1009)
Q Consensus 73 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n 152 (1009)
+.||+++++++. +|..+. ++|++|+|++|.+++..|..|.++++|++|+|++|++++..|..|+++++|++||+++|
T Consensus 3 ~~l~ls~n~l~~-ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N 79 (520)
T 2z7x_B 3 FLVDRSKNGLIH-VPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDLSHN 79 (520)
T ss_dssp CEEECTTSCCSS-CCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEECCSS
T ss_pred ceEecCCCCccc-cccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEecCCC
Confidence 368999999984 666665 89999999999999877789999999999999999999888999999999999999999
Q ss_pred cccCCCchHHhhhccCCcCeEeecCccCCC-CCCcccCCccccceeecccCcccCCCCccccccccc--ccccccCccC-
Q 047768 153 NLVGEIPEELISRRLFNLQGLSVGDNQLTG-QLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSL--AYLHVGDNHF- 228 (1009)
Q Consensus 153 ~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l- 228 (1009)
+++ .+|.. .+.+|++|+|++|++++ .+|..|+++++|++|++++|++.+ ..|..+++| ++|++++|.+
T Consensus 80 ~l~-~lp~~----~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 80 KLV-KISCH----PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CCC-EEECC----CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred cee-ecCcc----ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 998 67765 58899999999999987 468899999999999999999875 467777777 9999999998
Q ss_pred -CCCCCCcccCCC-hHHHHHhhCCccCCCCChhhccCCCcccceeccccc-------cCCCCCCCcCccccccccccccc
Q 047768 229 -SGTIPPSVYNIS-SLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNN-------FTGSLPDSFSNASNLEVLHLAEN 299 (1009)
Q Consensus 229 -~~~~p~~~~~l~-~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~-------l~~~~p~~~~~l~~L~~L~Ls~N 299 (1009)
++..|..+..+. ....+++++|++.+.++...+.++++|+.|++++|. +.+.+| .|..+++|++|++++|
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~-~l~~l~~L~~L~l~~~ 230 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILA-KLQTNPKLSNLTLNNI 230 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHH-GGGGCTTCCEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchh-hhccccchhhcccccc
Confidence 777777776655 223345566666555555555555555555555554 333333 3444444444444444
Q ss_pred ccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCc
Q 047768 300 QFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQ 379 (1009)
Q Consensus 300 ~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~ 379 (1009)
.+.+.....+. .. ...++ |++|++++|+
T Consensus 231 ~l~~~~~~~~~--------------------------~~-~~~~~-------------------------L~~L~l~~n~ 258 (520)
T 2z7x_B 231 ETTWNSFIRIL--------------------------QL-VWHTT-------------------------VWYFSISNVK 258 (520)
T ss_dssp EEEHHHHHHHH--------------------------HH-HHTSS-------------------------CSEEEEEEEE
T ss_pred ccCHHHHHHHH--------------------------HH-hhhCc-------------------------ccEEEeeccc
Confidence 44321110000 00 00123 3444444444
Q ss_pred cccCCCccc-----cCcCccCEEEccCCCCCCCCC-CCcCCc---ccccceecccccccCCCCcccccccccccccccCc
Q 047768 380 IYGTIPPGI-----ANLVNLNSLRMEANRLTGTIP-HVIGEL---KNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGAN 450 (1009)
Q Consensus 380 l~~~~p~~~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 450 (1009)
++|.+|..+ .++++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+.. .+..+++|++|++++|
T Consensus 259 l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~--~~~~l~~L~~L~Ls~n 334 (520)
T 2z7x_B 259 LQGQLDFRDFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHML--CPSKISPFLHLDFSNN 334 (520)
T ss_dssp EESCCCCCCCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSS
T ss_pred ccCccccchhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCcccccc--chhhCCcccEEEeECC
Confidence 444444444 4455555555555555 222 233322 34555555555544211 1134445555555555
Q ss_pred ccccccCCCCCCCCCccccccCCCCccC--CCchhhhhhccceeeEecCCCccCCCCCCC-ccCCCCCCeeeccccccCC
Q 047768 451 NLQGNIPFSLGNCKNLMFFFAPRNKLTG--ALPQQILEITTLSLSLDLSDNLLNGSLPLG-VGNLKSLVRLGIARNQFSG 527 (1009)
Q Consensus 451 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~--~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~~ 527 (1009)
++++.+|..++++++|++|++++|++++ .+|..+.....+. .||+++|++++.+|.. +..+++|++|++++|++++
T Consensus 335 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l~~L~-~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~ 413 (520)
T 2z7x_B 335 LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQMKSLQ-QLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTD 413 (520)
T ss_dssp CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTCTTCC-EEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCG
T ss_pred ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhCCCCC-EEECCCCcCCcccccchhccCccCCEEECcCCCCCc
Confidence 5554455555555555555555555553 2333333333322 3777777777655554 7788999999999999998
Q ss_pred CccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccc-cccccccCceecccccCcccCCCC
Q 047768 528 QIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKY-LENLSFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 528 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~ 604 (1009)
.+|..+. ++|+.|+|++|+|+ .+|..+..+++|++|+|++|+|+ .+|.. +..+++|++|++++|+++|.++..
T Consensus 414 ~~~~~l~--~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 487 (520)
T 2z7x_B 414 TIFRCLP--PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLK-SVPDGIFDRLTSLQKIWLHTNPWDCSCPRI 487 (520)
T ss_dssp GGGGSCC--TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CCCTTTTTTCTTCCEEECCSSCBCCCHHHH
T ss_pred chhhhhc--ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCC-ccCHHHhccCCcccEEECcCCCCcccCCch
Confidence 8888775 79999999999999 88888889999999999999999 56665 999999999999999999988753
No 21
>4fih_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP; 1.97A {Homo sapiens} PDB: 4fig_A* 4fif_A* 4fii_A* 4fij_A*
Probab=100.00 E-value=1.8e-49 Score=434.87 Aligned_cols=250 Identities=22% Similarity=0.288 Sum_probs=208.0
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEEE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKAL 780 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~l 780 (1009)
+.|++.++||+|+||+||+|+++.+|+.||||+++.......+.+.+|+++|++++|||||++++++... +..|+
T Consensus 74 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~-----~~~~i 148 (346)
T 4fih_A 74 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG-----DELWV 148 (346)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCSSGGGGHHHHHHHHHCCCTTBCCEEEEEEET-----TEEEE
T ss_pred HhcEEeEEeecCcCeEEEEEEECCCCCEEEEEEEecCchhHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-----CEEEE
Confidence 4688899999999999999999999999999999877666677899999999999999999999997653 78999
Q ss_pred EEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccccc
Q 047768 781 VYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAK 860 (1009)
Q Consensus 781 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~ 860 (1009)
|||||++|+|.+++.+.. +++.++..++.|++.||+|||++ +||||||||+|||++.++.+||+|||+|+
T Consensus 149 vmEy~~gg~L~~~l~~~~-------l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFGla~ 218 (346)
T 4fih_A 149 VMEFLEGGALTDIVTHTR-------MNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCA 218 (346)
T ss_dssp EECCCTTEEHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTCE
T ss_pred EEeCCCCCcHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEECCCCCEEEecCcCce
Confidence 999999999999997643 89999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccc
Q 047768 861 FLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPE 940 (1009)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 940 (1009)
.+.... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... .+.....
T Consensus 219 ~~~~~~--------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~-----~~~~~~i--- 282 (346)
T 4fih_A 219 QVSKEV--------PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPP-----LKAMKMI--- 282 (346)
T ss_dssp ECCSSS--------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHHH---
T ss_pred ecCCCC--------CcccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHH---
Confidence 765421 223457899999999999999999999999999999999999999974321 1111110
Q ss_pred hhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 941 KVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 941 ~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.+-..+.+.. ......++.+++.+||+.||++|||++|+++
T Consensus 283 --~~~~~~~~~~------------~~~~s~~~~dli~~~L~~dP~~R~ta~e~l~ 323 (346)
T 4fih_A 283 --RDNLPPRLKN------------LHKVSPSLKGFLDRLLVRDPAQRATAAELLK 323 (346)
T ss_dssp --HHSSCCCCSC------------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred --HcCCCCCCCc------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111111110 0122345779999999999999999999875
No 22
>3hmm_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=3.7e-49 Score=431.28 Aligned_cols=275 Identities=24% Similarity=0.305 Sum_probs=206.6
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEEE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKAL 780 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~l 780 (1009)
++|.+.++||+|+||+||+|++ +|+.||||+++.... ....+.+|+..+.+++|||||+++|+|... .......++
T Consensus 3 r~i~L~~~iG~G~fG~Vy~~~~--~g~~VAvK~l~~~~~-~~~~~e~Ei~~~~~l~HpNIv~l~g~~~~~-~~~~~~~~l 78 (303)
T 3hmm_A 3 RTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSREE-RSWFREAEIYQTVMLRHENILGFIAADNKD-NGTWTQLWL 78 (303)
T ss_dssp GGEEEEEEEEECSSSEEEEEEE--TTEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEE-CSSSEEEEE
T ss_pred cEEEEEEEEeeCCCeEEEEEEE--CCEEEEEEEECccch-hhHHHHHHHHHHhcCCCCCCCcEEEEEEec-CCCceEEEE
Confidence 4677889999999999999988 589999999964422 122334566666788999999999998753 122346799
Q ss_pred EEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhc-----CCCCceecCCCCCceeeCCCCceEEec
Q 047768 781 VYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHH-----CQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 781 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~-----~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
|||||++|+|.++++... ++|.++..++.|+|+||+|||++ ..++||||||||+|||++.++++||+|
T Consensus 79 V~Ey~~~gsL~~~l~~~~-------l~~~~~~~i~~~ia~gl~ylH~~~~~~~~~~~IiHRDlKp~NILl~~~~~~Ki~D 151 (303)
T 3hmm_A 79 VSDYHEHGSLFDYLNRYT-------VTVEGMIKLALSTASGLAHLHMEIVGTQGKPAIAHRDLKSKNILVKKNGTCCIAD 151 (303)
T ss_dssp EEECCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBCCEECSCCCGGGEEECTTSCEEECC
T ss_pred EecCCCCCcHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHhhhhccCCCCEeeccCCcccEEECCCCCEEEEe
Confidence 999999999999998653 89999999999999999999976 245899999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCC------CCCCcccchHHHHHHHHHHhCCCCCcccccC---
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG------EASMRGGVYSYGILLLEIFTRRRPTESMFNE--- 926 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~--- 926 (1009)
||+|+....... ..........||+.|||||++.+. .++.++|||||||++|||+||+.||......
T Consensus 152 FGla~~~~~~~~----~~~~~~~~~~GT~~ymAPE~l~~~~~~~~~~~~~k~DVwS~Gvvl~El~tg~~~~~~~~~~~~p 227 (303)
T 3hmm_A 152 LGLAVRHDSATD----TIDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIHEDYQLP 227 (303)
T ss_dssp CTTCEEEETTTT----EESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHHHHHHHHHHHHTBCBTTBCCCCCCT
T ss_pred CCCCccccCCCC----ceeeecccccccccccCHHHhcccccccCCccChhHhhhhHHHHHHHHHHCCCCCCcccccccc
Confidence 999987654321 111122346799999999998764 4678999999999999999998876543221
Q ss_pred -------CccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 047768 927 -------GLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCH 999 (1009)
Q Consensus 927 -------~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~ 999 (1009)
.......... +.+..+.+... ......+++..+.+++.+||+.||++||||.||++.|++
T Consensus 228 ~~~~~~~~~~~~~~~~~--------~~~~~~rp~~p-----~~~~~~~~~~~l~~li~~cl~~dP~~RPt~~ei~~~L~~ 294 (303)
T 3hmm_A 228 YYDLVPSDPSVEEMRKV--------VCEQKLRPNIP-----NRWQSCEALRVMAKIMRECWYANGAARLTALRIKKTLSQ 294 (303)
T ss_dssp TTTTSCSSCCHHHHHHH--------HTTSCCCCCCC-----GGGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHHHHHHHH
T ss_pred chhcccccchHHHHHHH--------HhcccCCCCCC-----ccccchHHHHHHHHHHHHHcccCHhHCcCHHHHHHHHHH
Confidence 1122222111 11222211110 112334677789999999999999999999999999999
Q ss_pred HHHh
Q 047768 1000 ARQN 1003 (1009)
Q Consensus 1000 i~~~ 1003 (1009)
+.++
T Consensus 295 l~~~ 298 (303)
T 3hmm_A 295 LSQQ 298 (303)
T ss_dssp HHHC
T ss_pred HHHH
Confidence 8764
No 23
>4g3f_A NF-kappa-beta-inducing kinase; non-RD kinase, protein serine/threonine kinase, S based drug design, MAP3K14, transferase; HET: 0WB; 1.64A {Mus musculus} PDB: 4g3g_A* 4g3c_A 4dn5_A*
Probab=100.00 E-value=4.5e-49 Score=430.50 Aligned_cols=262 Identities=24% Similarity=0.294 Sum_probs=209.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.+.|.+.++||+|+||+||+|+++.+|+.||||+++.+.. ..+|++++++++|||||++++++.. ....|
T Consensus 57 ~~~~~~~~~lG~G~fG~Vy~a~~~~~g~~vAiK~i~~~~~-----~~~E~~il~~l~HpnIV~l~~~~~~-----~~~~~ 126 (336)
T 4g3f_A 57 VHWMTHQPRVGRGSFGEVHRMKDKQTGFQCAVKKVRLEVF-----RVEELVACAGLSSPRIVPLYGAVRE-----GPWVN 126 (336)
T ss_dssp TTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTC-----CTHHHHTTTTCCCTTBCCEEEEEEE-----TTEEE
T ss_pred hhheEeCcEeccCCCeEEEEEEECCCCCEEEEEEECHHHh-----HHHHHHHHHhCCCCCCCcEEEEEEE-----CCEEE
Confidence 3567888899999999999999999999999999975432 2479999999999999999999764 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC-ceEEecccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM-VAHVSDFGL 858 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~-~~kl~DfGl 858 (1009)
+|||||++|+|.+++++... +++.++..++.|++.||+|||++ +||||||||+|||++.++ .+||+|||+
T Consensus 127 ivmEy~~gg~L~~~l~~~~~------l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~~vKl~DFGl 197 (336)
T 4g3f_A 127 IFMELLEGGSLGQLIKQMGC------LPEDRALYYLGQALEGLEYLHTR---RILHGDVKADNVLLSSDGSRAALCDFGH 197 (336)
T ss_dssp EEECCCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHTT---TEECSCCCGGGEEECTTSCCEEECCCTT
T ss_pred EEEeccCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CceecccCHHHEEEeCCCCEEEEeeCCC
Confidence 99999999999999987653 99999999999999999999999 999999999999999988 699999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhc
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
|+......... ........+||+.|||||++.+..|+.++||||+||++|||+||+.||....... .........
T Consensus 198 a~~~~~~~~~~---~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~Pf~~~~~~~-~~~~i~~~~- 272 (336)
T 4g3f_A 198 ALCLQPDGLGK---SLLTGDYIPGTETHMAPEVVMGKPCDAKVDIWSSCCMMLHMLNGCHPWTQYFRGP-LCLKIASEP- 272 (336)
T ss_dssp CEEC---------------CCCCCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSTTTCCSC-CHHHHHHSC-
T ss_pred CeEccCCCccc---ceecCCccccCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCHHH-HHHHHHcCC-
Confidence 99876432211 1112234679999999999999999999999999999999999999997543322 222222110
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
....+ .+..+..++.+++.+||+.||++|||+.|+++.+....++..
T Consensus 273 -~~~~~-------------------~~~~~s~~~~~li~~~L~~dP~~R~sa~el~~~l~~~l~~~~ 319 (336)
T 4g3f_A 273 -PPIRE-------------------IPPSCAPLTAQAIQEGLRKEPVHRASAMELRRKVGKALQEVG 319 (336)
T ss_dssp -CGGGG-------------------SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHTT
T ss_pred -CCchh-------------------cCccCCHHHHHHHHHHccCCHhHCcCHHHHHHHHHHHHhhhh
Confidence 00000 011233467899999999999999999999999988776643
No 24
>3fpq_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase, ATP-BIND kinase, nucleotide-binding, phosphoprotein; 1.80A {Rattus norvegicus}
Probab=100.00 E-value=8.3e-49 Score=421.49 Aligned_cols=251 Identities=26% Similarity=0.388 Sum_probs=198.3
Q ss_pred ccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEEEE
Q 047768 704 SSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKALV 781 (1009)
Q Consensus 704 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv 781 (1009)
.+.+.||+|+||+||+|.++.+++.||||++..... ...+.|.+|++++++++|||||++++++... ..+....++|
T Consensus 29 ~~~~~iG~G~fg~Vy~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~-~~~~~~~~lv 107 (290)
T 3fpq_A 29 KFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCIVLV 107 (290)
T ss_dssp EEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEEE-ETTEEEEEEE
T ss_pred EeeeEEecCcCcEEEEEEECCCCeEEEEEEEchhhCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEeec-cCCCcEEEEE
Confidence 566789999999999999999999999999965432 2245789999999999999999999987643 2334668999
Q ss_pred EeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC-CCCceEEecccccc
Q 047768 782 YEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD-HDMVAHVSDFGLAK 860 (1009)
Q Consensus 782 ~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~-~~~~~kl~DfGla~ 860 (1009)
||||++|+|.+++++.. .+++..+..|+.|++.||+|||++ .++||||||||+|||++ .++.+||+|||+|+
T Consensus 108 mEy~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~ylH~~-~~~IiHRDlKp~NILl~~~~g~vKl~DFGla~ 180 (290)
T 3fpq_A 108 TELMTSGTLKTYLKRFK------VMKIKVLRSWCRQILKGLQFLHTR-TPPIIHRDLKCDNIFITGPTGSVKIGDLGLAT 180 (290)
T ss_dssp EECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHTS-SSCCCCCCCCGGGEEESSTTSCEEECCTTGGG
T ss_pred EeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC-CCCEEecccChhheeEECCCCCEEEEeCcCCE
Confidence 99999999999998765 389999999999999999999998 11399999999999997 47999999999998
Q ss_pred ccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccc
Q 047768 861 FLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPE 940 (1009)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 940 (1009)
.... ......+||+.|||||++.+ .|+.++|||||||++|||+||+.||..... .........
T Consensus 181 ~~~~----------~~~~~~~GTp~YmAPE~~~~-~y~~~~DiwSlGvilyelltg~~Pf~~~~~----~~~~~~~i~-- 243 (290)
T 3fpq_A 181 LKRA----------SFAKAVIGTPEFMAPEMYEE-KYDESVDVYAFGMCMLEMATSEYPYSECQN----AAQIYRRVT-- 243 (290)
T ss_dssp GCCT----------TSBEESCSSCCCCCGGGGGT-CCCTHHHHHHHHHHHHHHHHSSCTTTTCSS----HHHHHHHHT--
T ss_pred eCCC----------CccCCcccCccccCHHHcCC-CCCcHHHHHHHHHHHHHHHHCCCCCCCCCc----HHHHHHHHH--
Confidence 5432 12335689999999998865 699999999999999999999999964321 122211111
Q ss_pred hhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 941 KVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 941 ~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
....+.. ....+..++.+++.+||+.||++|||++|+++
T Consensus 244 -------~~~~~~~---------~~~~~~~~~~~li~~~L~~dP~~R~s~~e~l~ 282 (290)
T 3fpq_A 244 -------SGVKPAS---------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp -------TTCCCGG---------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred -------cCCCCCC---------CCccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 0010000 00012235778999999999999999999975
No 25
>4b9d_A Serine/threonine-protein kinase NEK1; transferase, inhibitor; HET: CK7; 1.90A {Homo sapiens} PDB: 4apc_A*
Probab=100.00 E-value=1.6e-49 Score=435.94 Aligned_cols=252 Identities=19% Similarity=0.303 Sum_probs=201.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|++.+.||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|+++|++++|||||++++++.. .+.
T Consensus 23 me~Y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~-----~~~ 97 (350)
T 4b9d_A 23 MEKYVRLQKIGEGSFGKAILVKSTEDGRQYVIKEINISRMSSKEREESRREVAVLANMKHPNIVQYRESFEE-----NGS 97 (350)
T ss_dssp CCCEEEEEEC------CEEEEEETTTCCEEEEEEEECTTSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEE-----TTE
T ss_pred ccceEEeEEEecCCCeEEEEEEECCCCCEEEEEEEehHHCCHHHHHHHHHHHHHHHHCCCCCCCcEEEEEEE-----CCE
Confidence 3689999999999999999999999999999999975432 234678999999999999999999999754 378
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.|+|||||++|+|.+++...... .+++.+++.|+.||+.||+|||++ +||||||||+|||++.++.+||+|||
T Consensus 98 ~yiVmEy~~gg~L~~~i~~~~~~----~~~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~DFG 170 (350)
T 4b9d_A 98 LYIVMDYCEGGDLFKRINAQKGV----LFQEDQILDWFVQICLALKHVHDR---KILHRDIKSQNIFLTKDGTVQLGDFG 170 (350)
T ss_dssp EEEEEECCTTCBHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TCEETTCCGGGEEECTTCCEEECSTT
T ss_pred EEEEEeCCCCCcHHHHHHHcCCC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCCHHHEEECCCCCEEEcccc
Confidence 89999999999999999765432 478999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
+|+..... .......+||+.|||||++.+..|+.++||||+||++|||+||+.||.... ..+.....
T Consensus 171 la~~~~~~--------~~~~~~~~GT~~YmAPE~l~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-----~~~~~~~i 237 (350)
T 4b9d_A 171 IARVLNST--------VELARACIGTPYYLSPEICENKPYNNKSDIWALGCVLYELCTLKHAFEAGS-----MKNLVLKI 237 (350)
T ss_dssp EESCCCHH--------HHHHHHHHSCCTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHHHHHH
T ss_pred cceeecCC--------cccccccCCCccccCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcC-----HHHHHHHH
Confidence 99866431 112334679999999999999999999999999999999999999997432 22222211
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
..... .+. ...+..++.+++.+||+.||++|||++|+++
T Consensus 238 ~~~~~--------~~~-----------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 276 (350)
T 4b9d_A 238 ISGSF--------PPV-----------SLHYSYDLRSLVSQLFKRNPRDRPSVNSILE 276 (350)
T ss_dssp HHTCC--------CCC-----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HcCCC--------CCC-----------CccCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 11110 000 0122345789999999999999999999976
No 26
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=3.9e-49 Score=482.40 Aligned_cols=515 Identities=20% Similarity=0.188 Sum_probs=375.6
Q ss_pred eEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecc
Q 047768 71 RVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAH 150 (1009)
Q Consensus 71 ~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~ 150 (1009)
.++.|||++|.|++..+.+|.++++|++|||++|+|++..|++|++|++|++|+|++|+|++..|..|+++++|++|+++
T Consensus 53 ~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L~~L~~L~Ls 132 (635)
T 4g8a_A 53 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 132 (635)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGGGGTTCTTCCEEECT
T ss_pred CCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCCCCCCEEECC
Confidence 56777777777777666677777777777777777776556667777777777777777776555667777777777777
Q ss_pred cccccCCCchHHhhhccCCcCeEeecCccCCCC-CCcccCCccccceeecccCcccCCCCcccccccccc----cccccC
Q 047768 151 RNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQ-LPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLA----YLHVGD 225 (1009)
Q Consensus 151 ~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~L~~ 225 (1009)
+|++++..+..+ ..+++|++|+|++|++++. .|..++++++|++|+|++|++++..+..|..+.+++ .++++.
T Consensus 133 ~N~l~~l~~~~~--~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~ 210 (635)
T 4g8a_A 133 ETNLASLENFPI--GHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSL 210 (635)
T ss_dssp TSCCCCSTTCCC--TTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTT
T ss_pred CCcCCCCChhhh--hcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhccc
Confidence 777764433333 5667777777777777643 466677777777777777777777777776665554 456667
Q ss_pred ccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccc------cCCCCCCCcCccccccccccccc
Q 047768 226 NHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNN------FTGSLPDSFSNASNLEVLHLAEN 299 (1009)
Q Consensus 226 N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~------l~~~~p~~~~~l~~L~~L~Ls~N 299 (1009)
|.++.. +........++.+++.+|.....++...+.++..++...+..+. +.......+..+..+..+++..+
T Consensus 211 n~l~~i-~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~ 289 (635)
T 4g8a_A 211 NPMNFI-QPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLA 289 (635)
T ss_dssp CCCCEE-CTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEE
T ss_pred Cccccc-CcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhh
Confidence 777633 33333344556666666665544445555556666655554332 33344455666666666666555
Q ss_pred cccc---ccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcC
Q 047768 300 QFRG---QVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLG 376 (1009)
Q Consensus 300 ~l~~---~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~ 376 (1009)
.... .....|..+.+++.+.+..|.+.... .+.....|+.|++.+|.+.+..+..+ ..++.+++.
T Consensus 290 ~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~--------~~~~~~~L~~L~l~~~~~~~~~~~~l----~~L~~l~l~ 357 (635)
T 4g8a_A 290 YLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVK--------DFSYNFGWQHLELVNCKFGQFPTLKL----KSLKRLTFT 357 (635)
T ss_dssp CCCSCEEECTTTTGGGTTCSEEEEESCEEEECG--------GGGSCCCCSEEEEESCEESSCCCCBC----TTCCEEEEE
T ss_pred hhcccccchhhhhhhhccccccccccccccccc--------ccccchhhhhhhcccccccCcCcccc----hhhhhcccc
Confidence 4332 22344566677777777777665432 24556788899999998876554433 457788888
Q ss_pred CCccccCCCccccCcCccCEEEccCCCCCC--CCCCCcCCcccccceecccccccCCCCcccccccccccccccCccccc
Q 047768 377 KNQIYGTIPPGIANLVNLNSLRMEANRLTG--TIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQG 454 (1009)
Q Consensus 377 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 454 (1009)
+|.+... .....+++|+.|++++|.+.. ..+..+..+.+|+.|+++.|.+. ..+..+..+++|+.+++++|++..
T Consensus 358 ~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L~~l~l~~~~~~~ 434 (635)
T 4g8a_A 358 SNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQ 434 (635)
T ss_dssp SCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTCCEEECTTSEEES
T ss_pred cccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccccchhhhhccccc
Confidence 8887643 345678899999999998853 35566678889999999999887 456678889999999999888776
Q ss_pred ccC-CCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccC-CCCCCCccCCCCCCeeeccccccCCCcccc
Q 047768 455 NIP-FSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLN-GSLPLGVGNLKSLVRLGIARNQFSGQIPVT 532 (1009)
Q Consensus 455 ~~p-~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~ 532 (1009)
..+ ..+.++++++.++++.|.+++..|..+.....+ ..|++++|.+. +.+|..|..+++|++|||++|+|++.+|..
T Consensus 435 ~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L-~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~ 513 (635)
T 4g8a_A 435 MSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSL-EVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA 513 (635)
T ss_dssp TTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTC-CEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT
T ss_pred cccccccccccccccccccccccccccccccccchhh-hhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH
Confidence 555 467888999999999999987766655554444 45999999854 457888999999999999999999988999
Q ss_pred ccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccc-cccCceecccccCcccCCCC
Q 047768 533 LGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENL-SFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 533 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l-~~L~~L~ls~N~l~g~~p~~ 604 (1009)
|+++++|+.|+|++|+|++..|..|+++++|++|||++|+|++.+|..|..+ ++|++|+|++|++.|.+...
T Consensus 514 f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~C~~~ 586 (635)
T 4g8a_A 514 FNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQ 586 (635)
T ss_dssp TTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCSGGGH
T ss_pred HcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCcccCCcH
Confidence 9999999999999999998889999999999999999999999999999988 68999999999999988743
No 27
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=100.00 E-value=2.1e-49 Score=475.57 Aligned_cols=480 Identities=16% Similarity=0.168 Sum_probs=400.2
Q ss_pred CccceeeCC--CCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCC
Q 047768 59 HWTGVTCGR--RNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPT 136 (1009)
Q Consensus 59 ~w~gv~C~~--~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 136 (1009)
++.+++.-. ...+++.|+|++|.+++..+..|+++++|++|+|++|++++..|+.|+++++|++|||++|++++..|.
T Consensus 13 ~~~~l~~ip~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~ 92 (549)
T 2z81_A 13 RSRSFTSIPSGLTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSS 92 (549)
T ss_dssp TTSCCSSCCSCCCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHH
T ss_pred CCCccccccccCCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHH
Confidence 455555422 235899999999999999999999999999999999999988889999999999999999999988888
Q ss_pred CCcCCCcCcEEecccccccC-CCchHHhhhccCCcCeEeecCccCCCCCC-cccCCccccceeecccCcccCCCCccccc
Q 047768 137 NLSHCSKLITFSAHRNNLVG-EIPEELISRRLFNLQGLSVGDNQLTGQLP-ASIGNLSALRVIDIRTNRLWGKIPITLSQ 214 (1009)
Q Consensus 137 ~l~~l~~L~~L~l~~n~l~~-~~p~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 214 (1009)
.|+++++|++|++++|.+++ .+|..+ ..+++|++|++++|++.+.+| ..|+++++|++|++++|++++..|..+..
T Consensus 93 ~~~~l~~L~~L~Ls~n~l~~~~~~~~~--~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~ 170 (549)
T 2z81_A 93 WFGPLSSLKYLNLMGNPYQTLGVTSLF--PNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKS 170 (549)
T ss_dssp HHTTCTTCCEEECTTCCCSSSCSSCSC--TTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTT
T ss_pred HhccCCCCcEEECCCCcccccchhhhh--hccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhc
Confidence 89999999999999999986 355544 679999999999999555555 68999999999999999999999999999
Q ss_pred ccccccccccCccCCCCCCCcc-cCCChHHHHHhhCCccCCCC--ChhhccCCCcccceeccccccCCCCC----CCcCc
Q 047768 215 LTSLAYLHVGDNHFSGTIPPSV-YNISSLVEIYLYGNRFTGSL--PIEIGKNLPNLRNFVIYTNNFTGSLP----DSFSN 287 (1009)
Q Consensus 215 l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~i--p~~~~~~l~~L~~L~L~~N~l~~~~p----~~~~~ 287 (1009)
+++|++|+++.|.+. .+|..+ ..+++|++|++++|++++.. |..+...+++|+.|++++|.+++..+ ..+..
T Consensus 171 l~~L~~L~l~~n~~~-~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~ 249 (549)
T 2z81_A 171 IRDIHHLTLHLSESA-FLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRY 249 (549)
T ss_dssp CSEEEEEEEECSBST-THHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGG
T ss_pred cccCceEecccCccc-ccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhh
Confidence 999999999999987 555544 56899999999999999532 44555678999999999999886443 34567
Q ss_pred ccccccccccccccccccc------cccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCch
Q 047768 288 ASNLEVLHLAENQFRGQVS------INFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPH 361 (1009)
Q Consensus 288 l~~L~~L~Ls~N~l~~~~~------~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~ 361 (1009)
+++|+.|++++|.+.+... ..+..+.+|+.|++..+.+..... .......+...++|+.|++++|.++ .+|.
T Consensus 250 ~~~L~~l~l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~-~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~ 327 (549)
T 2z81_A 250 ILELSEVEFDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYL-FYDLSTVYSLLEKVKRITVENSKVF-LVPC 327 (549)
T ss_dssp CTTCCEEEEESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGG-SCCCCHHHHHSTTCCEEEEESSCCC-CCCH
T ss_pred hccccccccccccccccccccccchhhhhhhcccccccccccccchhhh-cccchhhhhhcccceEEEeccCccc-cCCH
Confidence 8899999999999887532 245678889999999988765321 0111223445678999999999998 6777
Q ss_pred hhhhhcccceEEEcCCCccccCCC---ccccCcCccCEEEccCCCCCCCCC--CCcCCcccccceecccccccCCCCccc
Q 047768 362 SIANLSTALIDFNLGKNQIYGTIP---PGIANLVNLNSLRMEANRLTGTIP--HVIGELKNLQLLHLHANFLQGTIPSSL 436 (1009)
Q Consensus 362 ~~~~l~~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p--~~~~~l~~L~~L~L~~N~l~~~~p~~~ 436 (1009)
.+..-...|++|+|++|++++.+| ..+..+++|+.|+|++|++++..+ ..+..+++|++|+|++|+++ .+|..+
T Consensus 328 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~ 406 (549)
T 2z81_A 328 SFSQHLKSLEFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTLKNLTSLDISRNTFH-PMPDSC 406 (549)
T ss_dssp HHHHHCTTCCEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGCTTCCEEECTTCCCC-CCCSCC
T ss_pred HHHhcCccccEEEccCCccccccccchhhhhccccCcEEEccCCcccccccchhhhhcCCCCCEEECCCCCCc-cCChhh
Confidence 775444789999999999998764 447899999999999999986543 56889999999999999999 688899
Q ss_pred ccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCC
Q 047768 437 GNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLV 516 (1009)
Q Consensus 437 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~ 516 (1009)
..+++|++|++++|+++ .+|..+. ++|+ .||+++|++++.+ +.+++|+
T Consensus 407 ~~~~~L~~L~Ls~N~l~-~l~~~~~--~~L~-------------------------~L~Ls~N~l~~~~----~~l~~L~ 454 (549)
T 2z81_A 407 QWPEKMRFLNLSSTGIR-VVKTCIP--QTLE-------------------------VLDVSNNNLDSFS----LFLPRLQ 454 (549)
T ss_dssp CCCTTCCEEECTTSCCS-CCCTTSC--TTCS-------------------------EEECCSSCCSCCC----CCCTTCC
T ss_pred cccccccEEECCCCCcc-cccchhc--CCce-------------------------EEECCCCChhhhc----ccCChhc
Confidence 99999999999999998 4444321 2333 3677777776532 5788999
Q ss_pred eeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccc
Q 047768 517 RLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIP 578 (1009)
Q Consensus 517 ~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 578 (1009)
+|+|++|+|+ .+|. ...+++|++|+|++|++++.+|..|+.+++|+.|+|++|.+++..|
T Consensus 455 ~L~Ls~N~l~-~ip~-~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~~~ 514 (549)
T 2z81_A 455 ELYISRNKLK-TLPD-ASLFPVLLVMKISRNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 514 (549)
T ss_dssp EEECCSSCCS-SCCC-GGGCTTCCEEECCSSCCCCCCTTGGGGCTTCCEEECCSSCBCCCHH
T ss_pred EEECCCCccC-cCCC-cccCccCCEEecCCCccCCcCHHHHhcCcccCEEEecCCCccCCCc
Confidence 9999999999 6776 5789999999999999999999999999999999999999998777
No 28
>4ase_A Vascular endothelial growth factor receptor 2; transferase, angiogenesis, signaling protein, phosphorylatio receptor, inhibitor; HET: AV9; 1.83A {Homo sapiens} PDB: 4agd_A* 4asd_A* 4agc_A*
Probab=100.00 E-value=5.1e-49 Score=436.11 Aligned_cols=278 Identities=21% Similarity=0.313 Sum_probs=218.5
Q ss_pred CHHHHHHHhccCccCCcccccCCceEEEEEEecC-----CeEEEEEEeecccc-cchHHHHHHHHHHHhcCC-CCcceEE
Q 047768 692 SYKELSKATNEFSSSNTIGRGSFGFVYKGVLHEN-----GMLVAVKVINLEQK-GGSKSFAAECEALRSIRH-RNLIKIV 764 (1009)
Q Consensus 692 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h-~niv~l~ 764 (1009)
...+++...++|++.+.||+|+||+||+|++... ++.||||+++.... ...+.|.+|+++|++++| ||||+++
T Consensus 55 ~~~~wEi~~~~~~l~~~LG~G~fG~Vy~a~~~~~~~~~~~k~VAvK~l~~~~~~~~~~~~~~E~~il~~l~hhpnIV~l~ 134 (353)
T 4ase_A 55 DASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLL 134 (353)
T ss_dssp CHHHHBCCGGGEEEEEEEEECSSEEEEEEEEETSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEE
T ss_pred CCcccEecHHHeEEeeEEecCCCeEEEEEEEcCCCcccCCeEEEEEEEccccChHHHHHHHHHHHHHHHcCCCCcEEEEE
Confidence 3445555668899999999999999999998743 36899999965432 234679999999999965 8999999
Q ss_pred eeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCC----------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCce
Q 047768 765 TICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQL----------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIV 834 (1009)
Q Consensus 765 ~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~iv 834 (1009)
|+|... ....++|||||++|+|.++++...... ....+++.++..++.|||+||+|||++ +||
T Consensus 135 g~~~~~----~~~~~iV~Ey~~~G~L~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~qia~gl~yLH~~---~ii 207 (353)
T 4ase_A 135 GACTKP----GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCI 207 (353)
T ss_dssp EEECCT----TSCCEEEEECCTTEEHHHHHHHTGGGBCCC-------CTTCBCHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred EEEEec----CCEEEEEEEcCCCCCHHHHHHhcccccccccccchhhccccCCHHHHHHHHHHHHHHHHhHhhC---Cee
Confidence 998542 356799999999999999998643210 123489999999999999999999999 999
Q ss_pred ecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHH
Q 047768 835 HGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIF 914 (1009)
Q Consensus 835 Hrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ell 914 (1009)
||||||+|||+++++++||+|||+|+....... ........||+.|||||++.+..|+.++|||||||++|||+
T Consensus 208 HRDLK~~NILl~~~~~vKi~DFGlar~~~~~~~------~~~~~~~~gt~~ymAPE~l~~~~y~~ksDVwS~Gv~l~El~ 281 (353)
T 4ase_A 208 HRDLAARNILLSEKNVVKICDFGLARDIYKDPD------YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIF 281 (353)
T ss_dssp CSCCSGGGEEECGGGCEEECCCGGGSCTTTCTT------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred cCccCccceeeCCCCCEEECcchhhhhcccCCC------ceeeccccccccccCHHHHhcCCCCCcccEeehHHHHHHHH
Confidence 999999999999999999999999997654321 11223467999999999999999999999999999999999
Q ss_pred h-CCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 047768 915 T-RRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDV 993 (1009)
Q Consensus 915 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~ev 993 (1009)
| |+.||....... .+........+ ... +..+..++.+++.+||+.||++||||+||
T Consensus 282 t~G~~Pf~~~~~~~-~~~~~i~~g~~-----------~~~-----------p~~~~~~~~~li~~c~~~dP~~RPt~~ei 338 (353)
T 4ase_A 282 SLGASPYPGVKIDE-EFCRRLKEGTR-----------MRA-----------PDYTTPEMYQTMLDCWHGEPSQRPTFSEL 338 (353)
T ss_dssp TTSCCSSTTCCCSH-HHHHHHHHTCC-----------CCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred hCCCCCCCCCCHHH-HHHHHHHcCCC-----------CCC-----------CccCCHHHHHHHHHHcCcChhHCcCHHHH
Confidence 8 999997543221 11111111000 001 11234568899999999999999999999
Q ss_pred HHHHHHHHHhhh
Q 047768 994 VVKLCHARQNFL 1005 (1009)
Q Consensus 994 l~~L~~i~~~~~ 1005 (1009)
++.|+.+.+.-.
T Consensus 339 l~~L~~llq~~~ 350 (353)
T 4ase_A 339 VEHLGNLLQANA 350 (353)
T ss_dssp HHHHHHHHHHTC
T ss_pred HHHHHHHHHHhh
Confidence 999999877543
No 29
>4fie_A Serine/threonine-protein kinase PAK 4; kinase domain, protein ATP binding, phosphorylation, transferase; HET: SEP ANP; 3.11A {Homo sapiens}
Probab=100.00 E-value=2.5e-48 Score=436.36 Aligned_cols=250 Identities=22% Similarity=0.306 Sum_probs=208.1
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEEE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKAL 780 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~l 780 (1009)
+.|++.++||+|+||+||+|+++.+|+.||||+++.......+.+.+|+++|++++|||||++++++... +..|+
T Consensus 151 ~~y~~~~~iG~G~fG~V~~a~~~~tg~~vAiK~i~~~~~~~~~~~~~Ei~il~~l~HpnIV~l~~~~~~~-----~~~~i 225 (423)
T 4fie_A 151 SYLDNFIKIGEGSTGIVCIATVRSSGKLVAVKKMDLRKQQRRELLFNEVVIMRDYQHENVVEMYNSYLVG-----DELWV 225 (423)
T ss_dssp GTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESTTCSSGGGHHHHHHHHHHCCCTTBCCEEEEEEET-----TEEEE
T ss_pred HhcEeeeEeccCcCcEEEEEEECCCCCEEEEEEEeccchhHHHHHHHHHHHHHhCCCCCCCceEEEEEEC-----CEEEE
Confidence 5699999999999999999999999999999999876666677899999999999999999999997653 78999
Q ss_pred EEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccccc
Q 047768 781 VYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAK 860 (1009)
Q Consensus 781 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~ 860 (1009)
|||||++|+|.++++... +++.++..|+.|++.||+|||++ +||||||||+|||++.+|.+||+|||+|+
T Consensus 226 VmEy~~gG~L~~~i~~~~-------l~e~~~~~~~~qil~aL~ylH~~---~IiHRDiKp~NILl~~~g~vKl~DFGla~ 295 (423)
T 4fie_A 226 VMEFLEGGALTDIVTHTR-------MNEEQIAAVCLAVLQALSVLHAQ---GVIHRDIKSDSILLTHDGRVKLSDFGFCA 295 (423)
T ss_dssp EEECCTTEEHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSTTTEEECTTCCEEECCCTTCE
T ss_pred EEeCCCCCcHHHHHhccC-------CCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEecCccce
Confidence 999999999999997643 89999999999999999999999 99999999999999999999999999998
Q ss_pred ccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccc
Q 047768 861 FLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPE 940 (1009)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~ 940 (1009)
.+.... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||...... .....+....
T Consensus 296 ~~~~~~--------~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~~~--~~~~~i~~~~-- 363 (423)
T 4fie_A 296 QVSKEV--------PRRKSLVGTPYWMAPELISRLPYGPEVDIWSLGIMVIEMVDGEPPYFNEPPL--KAMKMIRDNL-- 363 (423)
T ss_dssp ECCSSC--------CCBCCCEECTTTCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH--HHHHHHHHSC--
T ss_pred ECCCCC--------ccccccccCcCcCCHHHHCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCHH--HHHHHHHcCC--
Confidence 765421 2334578999999999999999999999999999999999999999743211 1111111111
Q ss_pred hhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 941 KVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 941 ~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.+.+... .....++.+++.+||+.||++|||++|+++
T Consensus 364 ------~~~~~~~------------~~~s~~~~dli~~~L~~dP~~R~ta~ell~ 400 (423)
T 4fie_A 364 ------PPRLKNL------------HKVSPSLKGFLDRLLVRDPAQRATAAELLK 400 (423)
T ss_dssp ------CCCCSCT------------TSSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred ------CCCCccc------------ccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 1111000 012245779999999999999999999875
No 30
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=100.00 E-value=9.2e-49 Score=481.72 Aligned_cols=436 Identities=19% Similarity=0.235 Sum_probs=270.9
Q ss_pred CCCCeeeecCCcCCccCCccccCccccccccc-cccccCCCCCCCCcCC----CcCc--EEe----------cccccccC
Q 047768 94 SFLRYINIADNDFHGEIPDRIGNLFRLETLVL-ANNSFSGRIPTNLSHC----SKLI--TFS----------AHRNNLVG 156 (1009)
Q Consensus 94 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L-s~N~l~~~~p~~l~~l----~~L~--~L~----------l~~n~l~~ 156 (1009)
.+++.|+|++|+++|.+|+.|++|++|++||| ++|.++|..|-..... +.++ .+. ....++.+
T Consensus 323 ~~V~~L~Ls~~~L~G~ip~~l~~L~~L~~LdLss~N~lsG~~~~~~~~~~~~l~~~~l~~lr~~~~~~~l~~~~~~~~s~ 402 (876)
T 4ecn_A 323 GRVTGLSLAGFGAKGRVPDAIGQLTELKVLSFGTHSETVSGRLFGDEELTPDMSEERKHRIRMHYKKMFLDYDQRLNLSD 402 (876)
T ss_dssp SCEEEEECTTTCCEEEECGGGGGCTTCCEEESCCTTHHHHTTCBTTBCCCSSCCHHHHHHHHTHHHHHHTCCCGGGGSCH
T ss_pred CCEEEEECccCCCCCcCchHHhccccceEeeecccccccccccccccccccccchhHHHHHHHhhhhhhhccCcchhhhH
Confidence 57899999999999999999999999999999 9999998855432211 0000 000 00011111
Q ss_pred CCchHHh---------hhccCCcCeEeecC--ccCCCCCCcccCCccccceeecccCcccC-----------------CC
Q 047768 157 EIPEELI---------SRRLFNLQGLSVGD--NQLTGQLPASIGNLSALRVIDIRTNRLWG-----------------KI 208 (1009)
Q Consensus 157 ~~p~~~~---------~~~l~~L~~L~L~~--n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-----------------~~ 208 (1009)
.++..+. ......++.+.+.. |++++ +|..|+++++|++|+|++|++++ .+
T Consensus 403 l~~~~l~~~~~~~~i~~~~~l~l~~l~l~~~~N~L~~-IP~~l~~L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~i 481 (876)
T 4ecn_A 403 LLQDAINRNPEMKPIKKDSRISLKDTQIGNLTNRITF-ISKAIQRLTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYE 481 (876)
T ss_dssp HHHHHHHTCTTSCCCCCCCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHT
T ss_pred HHHHHhhhCccccccccccccchhhceeccccCcccc-hhHHHhcCCCCCEEECcCCcCCCCcccccccccccccccccC
Confidence 1111110 01123445555544 88887 88889999999999999999987 38
Q ss_pred Ccccc--cccccccccccCccCCCCCCCcccCCChHHHHHhhCCc-cCC-CCChhhc------cCCCcccceeccccccC
Q 047768 209 PITLS--QLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNR-FTG-SLPIEIG------KNLPNLRNFVIYTNNFT 278 (1009)
Q Consensus 209 p~~~~--~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~-~ip~~~~------~~l~~L~~L~L~~N~l~ 278 (1009)
|..++ ++++|++|+|++|++.+.+|..|.++++|++|+|++|+ ++| .+|..++ ..+++|++|+|++|+++
T Consensus 482 P~~l~f~~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~ 561 (876)
T 4ecn_A 482 NEELSWSNLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLE 561 (876)
T ss_dssp TSCCCGGGCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCC
T ss_pred ChhhhhccCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCC
Confidence 88877 99999999999999999999999999999999999998 887 7887654 34569999999999999
Q ss_pred CCCCC--CcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccc-cceEEccCCCC
Q 047768 279 GSLPD--SFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTK-LQYLYLADNGF 355 (1009)
Q Consensus 279 ~~~p~--~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~-L~~L~L~~N~l 355 (1009)
.+|. .|+++++|++|+|++|+++. ++ .|..+++|+.|+|++|.+..++ ..+.++++ |+.|+|++|++
T Consensus 562 -~ip~~~~l~~L~~L~~L~Ls~N~l~~-lp-~~~~L~~L~~L~Ls~N~l~~lp-------~~l~~l~~~L~~L~Ls~N~L 631 (876)
T 4ecn_A 562 -EFPASASLQKMVKLGLLDCVHNKVRH-LE-AFGTNVKLTDLKLDYNQIEEIP-------EDFCAFTDQVEGLGFSHNKL 631 (876)
T ss_dssp -BCCCHHHHTTCTTCCEEECTTSCCCB-CC-CCCTTSEESEEECCSSCCSCCC-------TTSCEECTTCCEEECCSSCC
T ss_pred -ccCChhhhhcCCCCCEEECCCCCccc-ch-hhcCCCcceEEECcCCccccch-------HHHhhccccCCEEECcCCCC
Confidence 7888 99999999999999999983 33 6666666666666666655322 23445555 55555555555
Q ss_pred CCcCchhhhhhcccceEEEcCCCccccCCCccccCcCc--cCEEEccCCCCCCCCCCCc---C--Ccccccceecccccc
Q 047768 356 GGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVN--LNSLRMEANRLTGTIPHVI---G--ELKNLQLLHLHANFL 428 (1009)
Q Consensus 356 ~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~L~~N~l~~~~p~~~---~--~l~~L~~L~L~~N~l 428 (1009)
+ .+| ..+..++. |+.|+|++|++++.+|... . .+++|+.|+|++|++
T Consensus 632 ~-~lp-------------------------~~~~~~~~~~L~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~L 685 (876)
T 4ecn_A 632 K-YIP-------------------------NIFNAKSVYVMGSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNEI 685 (876)
T ss_dssp C-SCC-------------------------SCCCTTCSSCEEEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSCC
T ss_pred C-cCc-------------------------hhhhccccCCCCEEECcCCcCCCccccchhhhccccCCCcCEEEccCCcC
Confidence 5 334 44443332 5555555555554443221 1 223555566666655
Q ss_pred cCCCCcc-cccccccccccccCcccccccCCCCCCC--------CCccccccCCCCccCCCchhhhhhccceeeEecCCC
Q 047768 429 QGTIPSS-LGNLTLLTYLSFGANNLQGNIPFSLGNC--------KNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDN 499 (1009)
Q Consensus 429 ~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~l--------~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N 499 (1009)
+ .+|.. +..+++|++|+|++|+|+ .+|..+... ++|+. |+|++|
T Consensus 686 ~-~lp~~~~~~l~~L~~L~Ls~N~L~-~ip~~~~~~~~~~l~nl~~L~~-------------------------L~Ls~N 738 (876)
T 4ecn_A 686 Q-KFPTELFATGSPISTIILSNNLMT-SIPENSLKPKDGNYKNTYLLTT-------------------------IDLRFN 738 (876)
T ss_dssp C-SCCHHHHHTTCCCSEEECCSCCCS-CCCTTSSSCTTSCCTTGGGCCE-------------------------EECCSS
T ss_pred C-ccCHHHHccCCCCCEEECCCCcCC-ccChHHhccccccccccCCccE-------------------------EECCCC
Confidence 5 33333 235555666666666655 444433221 13433 333333
Q ss_pred ccCCCCCCCcc--CCCCCCeeeccccccCCCccccccCCCCccEEEecC------cccccccccccccccccceEcCCCc
Q 047768 500 LLNGSLPLGVG--NLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQG------NSFSGTIPQSLSSLTSIKELDLSQN 571 (1009)
Q Consensus 500 ~l~~~~p~~~~--~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~------N~l~~~~p~~~~~l~~L~~L~Ls~N 571 (1009)
+++ .+|..+. .+++|+.|+|++|+|++ +|..++.+++|+.|+|++ |++.+.+|..|+++++|+.|+|++|
T Consensus 739 ~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N 816 (876)
T 4ecn_A 739 KLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSN 816 (876)
T ss_dssp CCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSS
T ss_pred CCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCC
Confidence 333 3344443 44455555555555543 444444555555555533 4555555555555555555555555
Q ss_pred ccccccccccccccccCceecccccCc
Q 047768 572 NFSGQIPKYLENLSFLQYLNLSYNHFE 598 (1009)
Q Consensus 572 ~l~~~~p~~~~~l~~L~~L~ls~N~l~ 598 (1009)
+| +.+|..+. ++|+.|||++|++.
T Consensus 817 ~L-~~Ip~~l~--~~L~~LdLs~N~l~ 840 (876)
T 4ecn_A 817 DI-RKVDEKLT--PQLYILDIADNPNI 840 (876)
T ss_dssp CC-CBCCSCCC--SSSCEEECCSCTTC
T ss_pred CC-CccCHhhc--CCCCEEECCCCCCC
Confidence 55 45555443 35555555555554
No 31
>4aw0_A HPDK1, 3-phosphoinositide-dependent protein kinase 1; transferase, allosteric regulation, allosteric site, phosphorylation, AGC protein kinase; HET: SEP ATP MJF; 1.43A {Homo sapiens} PDB: 3hrc_A* 3hrf_A* 4a06_A* 4a07_A* 3rcj_A* 4aw1_A* 3rwq_A* 3sc1_A* 3qd0_A* 2r7b_A* 3ion_A* 3qcq_A* 3qcs_A* 3qcx_A* 3qcy_A* 3iop_A* 3qd3_A* 3qd4_A* 3h9o_A* 1uu3_A* ...
Probab=100.00 E-value=2.5e-48 Score=419.27 Aligned_cols=249 Identities=20% Similarity=0.292 Sum_probs=206.4
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecc---cccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLE---QKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
++|++.+.||+|+||+||+|+++.+|+.||||+++.. .....+.+.+|+++|++++|||||++++++.. ...
T Consensus 32 ~dy~i~~~lG~G~fg~V~~a~~~~~~~~~AiK~i~k~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~~~ 106 (311)
T 4aw0_A 32 EDFKFGKILGEGSFSTVVLARELATSREYAIKILEKRHIIKENKVPYVTRERDVMSRLDHPFFVKLYFTFQD-----DEK 106 (311)
T ss_dssp GGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SSE
T ss_pred cccEEEEEEecccCeEEEEEEECCCCCEEEEEEEEHHHCCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----CCE
Confidence 5799999999999999999999999999999999643 23345789999999999999999999998654 478
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.|+||||+++|+|.+++++... +++.++..++.|++.||+|||++ +||||||||+|||++.++.+||+|||
T Consensus 107 ~yivmEy~~gG~L~~~i~~~~~------l~e~~~~~~~~qi~~al~ylH~~---~IiHRDlKPeNILl~~~g~vKl~DFG 177 (311)
T 4aw0_A 107 LYFGLSYAKNGELLKYIRKIGS------FDETCTRFYTAEIVSALEYLHGK---GIIHRDLKPENILLNEDMHIQITDFG 177 (311)
T ss_dssp EEEEECCCTTEEHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCT
T ss_pred EEEEEecCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEEcCCCCEEEEEcC
Confidence 9999999999999999987653 99999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
+|+.+..... .......+||+.|||||++.+..|+.++||||+||++|||++|+.||.... ..+.....
T Consensus 178 la~~~~~~~~------~~~~~~~~GTp~YmAPEvl~~~~y~~~~DiWSlGvilyeml~G~~PF~~~~-----~~~~~~~i 246 (311)
T 4aw0_A 178 TAKVLSPESK------QARANSFVGTAQYVSPELLTEKSACKSSDLWALGCIIYQLVAGLPPFRAGN-----EGLIFAKI 246 (311)
T ss_dssp TCEECCTTTT------CCCBCCCCSCGGGCCHHHHHHSCBCHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHHH
T ss_pred CceecCCCCC------cccccCcccCcccCCHHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCC-----HHHHHHHH
Confidence 9998754321 123345789999999999999999999999999999999999999997432 22222211
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVV 994 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl 994 (1009)
..... ..++ ....++.+++.+|++.||++|||++|+.
T Consensus 247 ~~~~~---------~~p~-----------~~s~~~~dli~~lL~~dp~~R~t~~e~~ 283 (311)
T 4aw0_A 247 IKLEY---------DFPE-----------KFFPKARDLVEKLLVLDATKRLGCEEME 283 (311)
T ss_dssp HHTCC---------CCCT-----------TCCHHHHHHHHHHSCSSGGGSTTSGGGT
T ss_pred HcCCC---------CCCc-----------ccCHHHHHHHHHHccCCHhHCcChHHHc
Confidence 11110 0010 1123567999999999999999999874
No 32
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=100.00 E-value=1.6e-48 Score=473.21 Aligned_cols=476 Identities=18% Similarity=0.257 Sum_probs=320.9
Q ss_pred CCCCeeeecCCcCCccCCccccCccccccccccccccC------C------CCCCCCcCCCcCcEEecccccccCCCchH
Q 047768 94 SFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFS------G------RIPTNLSHCSKLITFSAHRNNLVGEIPEE 161 (1009)
Q Consensus 94 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~------~------~~p~~l~~l~~L~~L~l~~n~l~~~~p~~ 161 (1009)
.+++.|+|++|+++|.+|++|++|++|++|||++|.+. | .+|... +..|+ ++++.|.+.+.+|..
T Consensus 81 ~~V~~L~L~~~~l~g~lp~~l~~L~~L~~L~Ls~N~~~~~~~~~~~~~~~~~~~~~~--~~~l~-l~l~~~~l~~~~~~~ 157 (636)
T 4eco_A 81 GRVTGLSLEGFGASGRVPDAIGQLTELEVLALGSHGEKVNERLFGPKGISANMSDEQ--KQKMR-MHYQKTFVDYDPRED 157 (636)
T ss_dssp CCEEEEECTTSCCEEEECGGGGGCTTCCEEESCCGGGGGTCCSBSTTSBCTTCCHHH--HHHHH-THHHHHHTCCCGGGG
T ss_pred CCEEEEEecCcccCCcCChHHhcCccceEEECcCCccccCCccccccccccCchHHH--HHHHH-hhHHHhhhccCchhh
Confidence 46889999999999999999999999999999999873 2 222222 33344 444554444444433
Q ss_pred HhhhccCCcCeEeecCccCCCCCCcccCCccccceeecc--cCcccCCCCcccccccccccccccCccCCCC-CCCcccC
Q 047768 162 LISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIR--TNRLWGKIPITLSQLTSLAYLHVGDNHFSGT-IPPSVYN 238 (1009)
Q Consensus 162 ~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~--~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~ 238 (1009)
+. ..+..+..+++....+.. .....++.+.+. .|++++ +|..|+++++|++|+|++|++++. ++.....
T Consensus 158 ~~-~~~~~l~~~~l~~~~~~~------~~~~~l~~l~l~~~~n~l~~-ip~~l~~l~~L~~L~Ls~n~l~~~~~~~~~~~ 229 (636)
T 4eco_A 158 FS-DLIKDCINSDPQQKSIKK------SSRITLKDTQIGQLSNNITF-VSKAVMRLTKLRQFYMGNSPFVAENICEAWEN 229 (636)
T ss_dssp SC-HHHHHHHHHCTTSCCCCC------CCCCCCCTTTTTCCSCEEEE-ECGGGGGCTTCCEEEEESCCCCGGGBSSSCSC
T ss_pred HH-HHHHHHhhcCcccccccc------ccccchhhhhhccccCCCcc-CCHHHhcccCCCEEECcCCccccccccccccc
Confidence 21 111222222222222110 011122222222 344444 455555555555555555555432 0000000
Q ss_pred CChHHHHHhhCCccCCCCChhhc-cCCCcccceeccccccCCCCCCCcCcccccccccccccc-ccc-cccccccccccc
Q 047768 239 ISSLVEIYLYGNRFTGSLPIEIG-KNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQ-FRG-QVSINFNGLKDL 315 (1009)
Q Consensus 239 l~~L~~L~L~~N~l~~~ip~~~~-~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~-l~~-~~~~~f~~l~~L 315 (1009)
. +.+...+.+|..++ .++++|++|+|++|++.+.+|..|+++++|++|+|++|+ +++ ..|..+..+.
T Consensus 230 -~-------~~~~~~~~ip~~l~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~-- 299 (636)
T 4eco_A 230 -E-------NSEYAQQYKTEDLKWDNLKDLTDVEVYNCPNLTKLPTFLKALPEMQLINVACNRGISGEQLKDDWQALA-- 299 (636)
T ss_dssp -T-------TSHHHHHHTTSCCCGGGCTTCCEEEEECCTTCSSCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHH--
T ss_pred -c-------ccchhcccCchhhhhcccCCCCEEEecCCcCCccChHHHhcCCCCCEEECcCCCCCccccchHHHHhhh--
Confidence 0 00000011666654 247888888888888888888888888888888888887 776 5555443331
Q ss_pred ccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCch--hhhhhcccceEEEcCCCccccCCCccccCcCc
Q 047768 316 SMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPH--SIANLSTALIDFNLGKNQIYGTIPPGIANLVN 393 (1009)
Q Consensus 316 ~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~ 393 (1009)
.+..+++|++|+|++|+++ .+|. .+.++ +.|++|++++|+++|.+| .|.++++
T Consensus 300 ----------------------~~~~l~~L~~L~L~~n~l~-~ip~~~~l~~l-~~L~~L~L~~N~l~g~ip-~~~~l~~ 354 (636)
T 4eco_A 300 ----------------------DAPVGEKIQIIYIGYNNLK-TFPVETSLQKM-KKLGMLECLYNQLEGKLP-AFGSEIK 354 (636)
T ss_dssp ----------------------HSGGGGTCCEEECCSSCCS-SCCCHHHHTTC-TTCCEEECCSCCCEEECC-CCEEEEE
T ss_pred ----------------------ccccCCCCCEEECCCCcCC-ccCchhhhccC-CCCCEEeCcCCcCccchh-hhCCCCC
Confidence 1123366777777777776 5666 66666 467777777777776777 7777777
Q ss_pred cCEEEccCCCCCCCCCCCcCCccc-ccceecccccccCCCCccccccc--ccccccccCcccccccCCCCC-------CC
Q 047768 394 LNSLRMEANRLTGTIPHVIGELKN-LQLLHLHANFLQGTIPSSLGNLT--LLTYLSFGANNLQGNIPFSLG-------NC 463 (1009)
Q Consensus 394 L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~L~~N~l~~~~p~~~~-------~l 463 (1009)
|+.|+|++|+++ .+|..+..+++ |++|+|++|+++ .+|..+..+. +|++|++++|++++.+|..+. .+
T Consensus 355 L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~ 432 (636)
T 4eco_A 355 LASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKG 432 (636)
T ss_dssp ESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCC
T ss_pred CCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccC
Confidence 777777777777 66777777777 777777777777 6666666544 677777777777777777776 66
Q ss_pred CCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccC--------CCCCCeeeccccccCCCcccccc-
Q 047768 464 KNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGN--------LKSLVRLGIARNQFSGQIPVTLG- 534 (1009)
Q Consensus 464 ~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~--------l~~L~~L~ls~N~l~~~~p~~~~- 534 (1009)
++|++|++++|+++ .+|..++...+....|+|++|+++ .+|..+.. +++|++|+|++|+++ .+|..+.
T Consensus 433 ~~L~~L~Ls~N~l~-~lp~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~ 509 (636)
T 4eco_A 433 INVSSINLSNNQIS-KFPKELFSTGSPLSSINLMGNMLT-EIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRA 509 (636)
T ss_dssp CCEEEEECCSSCCC-SCCTHHHHTTCCCSEEECCSSCCS-BCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGST
T ss_pred CCCCEEECcCCccC-cCCHHHHccCCCCCEEECCCCCCC-CcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhh
Confidence 77777777777777 566666554444445888888888 56654332 339999999999999 7888887
Q ss_pred -CCCCccEEEecCcccccccccccccccccceEcC------CCcccccccccccccccccCceecccccCcccCCCCCcc
Q 047768 535 -ACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDL------SQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGIF 607 (1009)
Q Consensus 535 -~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L------s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~ 607 (1009)
.+++|+.|+|++|+|++ +|..++++++|++|+| ++|++.+.+|..+..+++|++|+|++|++ +.+|.. .+
T Consensus 510 ~~l~~L~~L~Ls~N~l~~-ip~~~~~l~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~-~~ 586 (636)
T 4eco_A 510 TTLPYLVGIDLSYNSFSK-FPTQPLNSSTLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEK-IT 586 (636)
T ss_dssp TTCTTCCEEECCSSCCSS-CCCGGGGCSSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSC-CC
T ss_pred ccCCCcCEEECCCCCCCC-cChhhhcCCCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHh-Hh
Confidence 99999999999999997 8999999999999999 56889999999999999999999999999 788875 34
Q ss_pred cCccccccccCCCcCC
Q 047768 608 KNKTGFSIVGNGKLCG 623 (1009)
Q Consensus 608 ~~~~~~~~~~n~~lc~ 623 (1009)
.++....+.+|+..|-
T Consensus 587 ~~L~~L~Ls~N~l~~~ 602 (636)
T 4eco_A 587 PNISVLDIKDNPNISI 602 (636)
T ss_dssp TTCCEEECCSCTTCEE
T ss_pred CcCCEEECcCCCCccc
Confidence 6677778888887763
No 33
>3hyh_A Carbon catabolite-derepressing protein kinase; kinase domain, transferase, ATP-binding, carbohydrate metabo kinase, membrane; 2.20A {Saccharomyces cerevisiae} PDB: 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=1e-47 Score=409.18 Aligned_cols=247 Identities=28% Similarity=0.402 Sum_probs=189.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|++.+.||+|+||+||+|+++.+|+.||||+++... ....+.+.+|++++++++||||+++++++.. .+
T Consensus 12 ig~Y~i~~~lG~G~fg~V~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~~~~~~~~-----~~ 86 (275)
T 3hyh_A 12 IGNYQIVKTLGEGSFGKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKS-----KD 86 (275)
T ss_dssp --CCEEEEEEEC---CCEEEEECTTTCCEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred eeCeEEEEEEecCcCeEEEEEEECCCCCEEEEEEEeHHHcCCHHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----CC
Confidence 368999999999999999999999999999999996432 2334679999999999999999999998654 47
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+ +|+|.+++.++.. +++.++..++.|++.||+|||++ +||||||||+|||+++++.+||+||
T Consensus 87 ~~~ivmEy~-~g~L~~~l~~~~~------l~e~~~~~~~~qi~~al~ylH~~---~IiHRDiKP~NILl~~~~~vkl~DF 156 (275)
T 3hyh_A 87 EIIMVIEYA-GNELFDYIVQRDK------MSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADF 156 (275)
T ss_dssp EEEEEEECC-CEEHHHHHHHSCS------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTCCEEECCS
T ss_pred EEEEEEeCC-CCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CcccccCChHHeEECCCCCEEEeec
Confidence 889999999 7899999987653 99999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+|+..... ......+||+.|||||++.+..+ +.++||||+||++|||+||+.||... .......
T Consensus 157 Gla~~~~~~---------~~~~~~~GT~~Y~APE~~~~~~y~~~~~DiwSlGvily~lltg~~PF~~~-----~~~~~~~ 222 (275)
T 3hyh_A 157 GLSNIMTDG---------NFLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDE-----SIPVLFK 222 (275)
T ss_dssp SCC------------------------CTTSCHHHHSSSSCCCTHHHHHHHHHHHHHHHHSSCSSCCS-----SHHHHHH
T ss_pred CCCeecCCC---------CccCCeeECcccCChhhhcCCCCCCChhhhHHHHHHHHHHHHCCCCCCCC-----CHHHHHH
Confidence 999866432 12234689999999999998876 58999999999999999999999742 1222221
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
...... . ..+. ....++.+++.+|++.||++|||++|+++
T Consensus 223 ~i~~~~--------~-~~p~-----------~~s~~~~~li~~~L~~dP~~R~s~~eil~ 262 (275)
T 3hyh_A 223 NISNGV--------Y-TLPK-----------FLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHHHTC--------C-CCCT-----------TSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHcCC--------C-CCCC-----------CCCHHHHHHHHHHccCChhHCcCHHHHHc
Confidence 111000 0 0000 11235679999999999999999999976
No 34
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=1.2e-47 Score=460.70 Aligned_cols=458 Identities=16% Similarity=0.204 Sum_probs=304.8
Q ss_pred EEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccc
Q 047768 73 TKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRN 152 (1009)
Q Consensus 73 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n 152 (1009)
..+|++++++++ +|..+. ++|++|+|++|.+++..|..|+++++|++|+|++|++++..|..|+++++|++||+++|
T Consensus 34 ~~l~ls~~~L~~-ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 110 (562)
T 3a79_B 34 SMVDYSNRNLTH-VPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLDVSHN 110 (562)
T ss_dssp CEEECTTSCCCS-CCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cEEEcCCCCCcc-CCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEECCCC
Confidence 678999999987 666554 89999999999999877889999999999999999999988999999999999999999
Q ss_pred cccCCCchHHhhhccCCcCeEeecCccCCCC-CCcccCCccccceeecccCcccCCCCccccccccc--ccccccCccC-
Q 047768 153 NLVGEIPEELISRRLFNLQGLSVGDNQLTGQ-LPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSL--AYLHVGDNHF- 228 (1009)
Q Consensus 153 ~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l- 228 (1009)
+++ .+|.. .+.+|++|+|++|++++. +|..|+++++|++|+|++|++.+. .+..+++| ++|++++|++
T Consensus 111 ~l~-~lp~~----~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~n~l~ 182 (562)
T 3a79_B 111 RLQ-NISCC----PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDLVSYH 182 (562)
T ss_dssp CCC-EECSC----CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEESSCC
T ss_pred cCC-ccCcc----ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeeccccc
Confidence 998 67765 589999999999999973 468899999999999999999763 45555555 9999999999
Q ss_pred -CCCCCCcccCCC--hHHHHHhhCCccCCCCChhhccCCCcccceecccccc-----CCCCCCCcCcccccccccccccc
Q 047768 229 -SGTIPPSVYNIS--SLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNF-----TGSLPDSFSNASNLEVLHLAENQ 300 (1009)
Q Consensus 229 -~~~~p~~~~~l~--~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l-----~~~~p~~~~~l~~L~~L~Ls~N~ 300 (1009)
++..|..+..+. .| .+++++|.+.+.++...+..+++|+.|++++|+. .+. ...|.++++|+.|+|+++.
T Consensus 183 ~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~-~~~l~~l~~L~~L~L~~~~ 260 (562)
T 3a79_B 183 IKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTF-LSELTRGPTLLNVTLQHIE 260 (562)
T ss_dssp CCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHH-HHHHHSCSSCEEEEEEEEE
T ss_pred ccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccchHHHH-HHHHhccCcceEEEecCCc
Confidence 878888887765 23 3466777777666666555566666666665531 110 1123344444444444443
Q ss_pred cccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhh-----hhhcccceEEEc
Q 047768 301 FRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSI-----ANLSTALIDFNL 375 (1009)
Q Consensus 301 l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~-----~~l~~~L~~L~L 375 (1009)
+.+..... .+.. ...++|++|++++|.+++.+|..+ ..+ ..|..+++
T Consensus 261 l~~~~~~~--------------------------~~~~-~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L-~~L~~~~~ 312 (562)
T 3a79_B 261 TTWKCSVK--------------------------LFQF-FWPRPVEYLNIYNLTITERIDREEFTYSETAL-KSLMIEHV 312 (562)
T ss_dssp ECHHHHHH--------------------------HHHH-HTTSSEEEEEEEEEEECSCCCCCCCCCCSCSC-CEEEEEEE
T ss_pred CcHHHHHH--------------------------HHHh-hhcccccEEEEeccEeeccccchhhhcccccc-hheehhhc
Confidence 33211000 0000 011244444444444444444333 121 22222333
Q ss_pred CCCccccCCC-ccccCc---CccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcc
Q 047768 376 GKNQIYGTIP-PGIANL---VNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANN 451 (1009)
Q Consensus 376 ~~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 451 (1009)
+.|.+ .+| ..+..+ .+|+.|++++|.+.... ....+++|++|+|++|++++.+|..+.++++|++|++++|+
T Consensus 313 ~~~~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 388 (562)
T 3a79_B 313 KNQVF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNG 388 (562)
T ss_dssp EECCC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSC
T ss_pred cccee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCC
Confidence 33332 111 111111 23444444444443111 01334444444444444444444444444444444444444
Q ss_pred ccc--ccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCC-CccCCCCCCeeeccccccCCC
Q 047768 452 LQG--NIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPL-GVGNLKSLVRLGIARNQFSGQ 528 (1009)
Q Consensus 452 l~~--~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~ 528 (1009)
+++ .+|..+.++++|+ .|++++|++++.+|. .+..+++|++|++++|++++.
T Consensus 389 l~~~~~~~~~~~~l~~L~-------------------------~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 443 (562)
T 3a79_B 389 LKNFFKVALMTKNMSSLE-------------------------TLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGS 443 (562)
T ss_dssp CCBTTHHHHTTTTCTTCC-------------------------EEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGG
T ss_pred cCCcccchhhhcCCCCCC-------------------------EEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcc
Confidence 443 1223344444433 366666666664554 477889999999999999988
Q ss_pred ccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccc-cccccccCceecccccCcccCCCC
Q 047768 529 IPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKY-LENLSFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 529 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~-~~~l~~L~~L~ls~N~l~g~~p~~ 604 (1009)
+|..+. ++|+.|+|++|+|+ .+|..+.++++|++|||++|+|+ .+|.. +..+++|++|++++|+++|.+|..
T Consensus 444 ~~~~l~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~-~l~~~~~~~l~~L~~L~l~~N~~~c~c~~~ 516 (562)
T 3a79_B 444 VFRCLP--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLK-SVPDGVFDRLTSLQYIWLHDNPWDCTCPGI 516 (562)
T ss_dssp GGSSCC--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCC-CCCTTSTTTCTTCCCEECCSCCBCCCHHHH
T ss_pred hhhhhc--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCC-CCCHHHHhcCCCCCEEEecCCCcCCCcchH
Confidence 887765 79999999999999 78887789999999999999999 56665 999999999999999999988864
No 35
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=100.00 E-value=2.9e-47 Score=453.50 Aligned_cols=462 Identities=18% Similarity=0.197 Sum_probs=328.8
Q ss_pred CeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeec
Q 047768 97 RYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVG 176 (1009)
Q Consensus 97 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~ 176 (1009)
++||+++|+++ .+|..+. ++|++|||++|.+++..|..|+++++|++|++++|++++..|..+ ..+.+|++|+|+
T Consensus 3 ~~l~ls~n~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls 77 (520)
T 2z7x_B 3 FLVDRSKNGLI-HVPKDLS--QKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQYLDISVF--KFNQELEYLDLS 77 (520)
T ss_dssp CEEECTTSCCS-SCCCSCC--TTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCCEEEGGGG--TTCTTCCEEECC
T ss_pred ceEecCCCCcc-ccccccc--ccccEEECCCCcccccChhhccccccccEEecCCCccCCcChHHh--hcccCCCEEecC
Confidence 57888888888 6887776 788888888888887777778888888888888877776556555 456777777777
Q ss_pred CccCCCCCCcccCCccccceeecccCcccC-CCCcccccccccccccccCccCCCCCCCcccCCChH--HHHHhhCCccC
Q 047768 177 DNQLTGQLPASIGNLSALRVIDIRTNRLWG-KIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSL--VEIYLYGNRFT 253 (1009)
Q Consensus 177 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L--~~L~L~~N~l~ 253 (1009)
+|+++ .+|.. .+++|++|+|++|++++ .+|..|+.+++|++|+|++|++++ ..+..+++| ++|++++|++.
T Consensus 78 ~N~l~-~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 78 HNKLV-KISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp SSCCC-EEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCcee-ecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 77777 45544 66777777777777765 356677777777777777777663 234444444 55555555540
Q ss_pred CCCChhhccCCCcccceeccccccCCCCCCCcCccc-cccccccccccccccc-ccccccccccccccccccccCCCCCC
Q 047768 254 GSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNAS-NLEVLHLAENQFRGQV-SINFNGLKDLSMLGLATNFLGNGAAN 331 (1009)
Q Consensus 254 ~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~-~~~f~~l~~L~~L~L~~N~l~~~~~~ 331 (1009)
+ .+..|..|..+. +...+++++|++.+.. ...+..+++|+.++++.|........
T Consensus 152 ~-----------------------~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~ 208 (520)
T 2z7x_B 152 G-----------------------EKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSY 208 (520)
T ss_dssp T-----------------------SSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHH
T ss_pred c-----------------------cccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccce
Confidence 0 444444444433 2223344444443322 22333344444444444321000000
Q ss_pred CcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCC
Q 047768 332 DLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHV 411 (1009)
Q Consensus 332 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 411 (1009)
.......+..+++|+.|++++|.+++..+..+.. .+ .+++|+.|++++|+++|.+|..
T Consensus 209 ~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~---------------------~~-~~~~L~~L~l~~n~l~~~~p~~ 266 (520)
T 2z7x_B 209 FLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQ---------------------LV-WHTTVWYFSISNVKLQGQLDFR 266 (520)
T ss_dssp HHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHH---------------------HH-HTSSCSEEEEEEEEEESCCCCC
T ss_pred eecchhhhccccchhhccccccccCHHHHHHHHH---------------------Hh-hhCcccEEEeecccccCccccc
Confidence 0001123556667777777776665332222111 11 2358999999999999999999
Q ss_pred c-----CCcccccceecccccccCCCC-cccccc---cccccccccCcccccccCCCCCCCCCccccccCCCCccCCCch
Q 047768 412 I-----GELKNLQLLHLHANFLQGTIP-SSLGNL---TLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQ 482 (1009)
Q Consensus 412 ~-----~~l~~L~~L~L~~N~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 482 (1009)
+ ..+++|+.+++++|.+ .+| ..+..+ .+|+.|++++|.+.+. + .+..+++|++|++++|++++.+|.
T Consensus 267 ~~~~~~~~l~~L~~l~l~~n~~--~~p~~~~~~~~~~~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~Ls~n~l~~~~~~ 342 (520)
T 2z7x_B 267 DFDYSGTSLKALSIHQVVSDVF--GFPQSYIYEIFSNMNIKNFTVSGTRMVHM-L-CPSKISPFLHLDFSNNLLTDTVFE 342 (520)
T ss_dssp CCCCCSCCCCEEEEEEEEECCC--CSCTHHHHHHHHTCCCSEEEEESSCCCCC-C-CCSSCCCCCEEECCSSCCCTTTTT
T ss_pred hhhcccccCceeEeccccccce--ecchhhhhcccccCceeEEEcCCCccccc-c-chhhCCcccEEEeECCccChhhhh
Confidence 8 9999999999999999 455 566665 6799999999998743 2 137889999999999999998888
Q ss_pred hhhhhccceeeEecCCCccCC--CCCCCccCCCCCCeeeccccccCCCcccc-ccCCCCccEEEecCccccccccccccc
Q 047768 483 QILEITTLSLSLDLSDNLLNG--SLPLGVGNLKSLVRLGIARNQFSGQIPVT-LGACTSLEYVELQGNSFSGTIPQSLSS 559 (1009)
Q Consensus 483 ~~~~~~~~~~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~~~~p~~-~~~l~~L~~L~L~~N~l~~~~p~~~~~ 559 (1009)
.+..+..+. .|++++|++++ .+|..++++++|++|++++|++++.+|.. +..+++|+.|+|++|++++.+|..+.
T Consensus 343 ~~~~l~~L~-~L~L~~N~l~~l~~~~~~~~~l~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~- 420 (520)
T 2z7x_B 343 NCGHLTELE-TLILQMNQLKELSKIAEMTTQMKSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNMSSNILTDTIFRCLP- 420 (520)
T ss_dssp TCCCCSSCC-EEECCSSCCCBHHHHHHHHTTCTTCCEEECCSSCCBCCGGGCSCCCCTTCCEEECCSSCCCGGGGGSCC-
T ss_pred hhccCCCCC-EEEccCCccCccccchHHHhhCCCCCEEECCCCcCCcccccchhccCccCCEEECcCCCCCcchhhhhc-
Confidence 876665555 59999999997 56778999999999999999999867764 88999999999999999988888775
Q ss_pred ccccceEcCCCcccccccccccccccccCceecccccCcccCCCC--CcccCccccccccCCCcCC
Q 047768 560 LTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK--GIFKNKTGFSIVGNGKLCG 623 (1009)
Q Consensus 560 l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~--~~~~~~~~~~~~~n~~lc~ 623 (1009)
++|++|||++|+|+ .+|..+..+++|++|+|++|+++. +|.. ..+.++....+.+|+..|.
T Consensus 421 -~~L~~L~Ls~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 483 (520)
T 2z7x_B 421 -PRIKVLDLHSNKIK-SIPKQVVKLEALQELNVASNQLKS-VPDGIFDRLTSLQKIWLHTNPWDCS 483 (520)
T ss_dssp -TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCC-CCTTTTTTCTTCCEEECCSSCBCCC
T ss_pred -ccCCEEECCCCccc-ccchhhhcCCCCCEEECCCCcCCc-cCHHHhccCCcccEEECcCCCCccc
Confidence 79999999999999 789888899999999999999994 5543 4455667778889988874
No 36
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=100.00 E-value=2.5e-46 Score=457.53 Aligned_cols=524 Identities=18% Similarity=0.153 Sum_probs=422.9
Q ss_pred CcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCch
Q 047768 81 SIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPE 160 (1009)
Q Consensus 81 ~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~ 160 (1009)
+++ .+|+.+- +++++|||++|+|++..|.+|.++++|++|||++|+|++..|..|+++++|++|+|++|++++..+.
T Consensus 42 ~l~-~vP~~lp--~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~ 118 (635)
T 4g8a_A 42 NFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALG 118 (635)
T ss_dssp CCS-SCCSSSC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECGG
T ss_pred CcC-ccCCCCC--cCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCCCCCHH
Confidence 444 3454442 4789999999999977778999999999999999999988888999999999999999999854444
Q ss_pred HHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccC-CCCcccccccccccccccCccCCCCCCCcccCC
Q 047768 161 ELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWG-KIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNI 239 (1009)
Q Consensus 161 ~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 239 (1009)
.+ ..+.+|++|+|++|++++..+..|+++++|++|+|++|++.+ ..|..++.+++|++|+|++|++++..|..|..+
T Consensus 119 ~f--~~L~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L 196 (635)
T 4g8a_A 119 AF--SGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVL 196 (635)
T ss_dssp GG--TTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHH
T ss_pred Hh--cCCCCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccch
Confidence 44 679999999999999998878889999999999999999976 468889999999999999999998888887766
Q ss_pred ChHH----HHHhhCCccCCCCChhhccCCCcccceeccccccCC-CCCCCcCcccccccccccccc------cccccccc
Q 047768 240 SSLV----EIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTG-SLPDSFSNASNLEVLHLAENQ------FRGQVSIN 308 (1009)
Q Consensus 240 ~~L~----~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~Ls~N~------l~~~~~~~ 308 (1009)
.+++ .++++.|.++ .++...+. ...++.+++.+|.... ..+..+.++..++...+..+. +.......
T Consensus 197 ~~l~~~~~~~~ls~n~l~-~i~~~~~~-~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~ 274 (635)
T 4g8a_A 197 HQMPLLNLSLDLSLNPMN-FIQPGAFK-EIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSA 274 (635)
T ss_dssp HTCTTCCCEEECTTCCCC-EECTTTTT-TCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTT
T ss_pred hhhhhhhhhhhcccCccc-ccCccccc-chhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccc
Confidence 6554 4678889888 67766665 4567788888886552 234456667777766665443 33334445
Q ss_pred cccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccc
Q 047768 309 FNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGI 388 (1009)
Q Consensus 309 f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~ 388 (1009)
+..+..+....+..+....... .....+..+.+++.+++.+|.+....+. ... ..++.|++.+|.+.+..+.
T Consensus 275 ~~~~~~l~~~~l~~~~~~~~~~---~~~~~~~~~~~l~~l~~~~~~~~~~~~~--~~~-~~L~~L~l~~~~~~~~~~~-- 346 (635)
T 4g8a_A 275 LEGLCNLTIEEFRLAYLDYYLD---GIIDLFNCLTNVSSFSLVSVTIERVKDF--SYN-FGWQHLELVNCKFGQFPTL-- 346 (635)
T ss_dssp TGGGGGSEEEEEEEECCCSCEE---ECTTTTGGGTTCSEEEEESCEEEECGGG--GSC-CCCSEEEEESCEESSCCCC--
T ss_pred cccccchhhhhhhhhhhccccc---chhhhhhhhccccccccccccccccccc--ccc-hhhhhhhcccccccCcCcc--
Confidence 5666666666665554433221 1223466778899999999988754332 222 5689999999999865543
Q ss_pred cCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccC--CCCcccccccccccccccCcccccccCCCCCCCCCc
Q 047768 389 ANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQG--TIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNL 466 (1009)
Q Consensus 389 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 466 (1009)
.+..|+.++++.|.+... .....+++|+.|++++|.+.. ..+..+..+.+|++|+++.|.+. ..+..+..+++|
T Consensus 347 -~l~~L~~l~l~~n~~~~~--~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~-~~~~~~~~l~~L 422 (635)
T 4g8a_A 347 -KLKSLKRLTFTSNKGGNA--FSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVI-TMSSNFLGLEQL 422 (635)
T ss_dssp -BCTTCCEEEEESCCSCCB--CCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEE-EECSCCTTCTTC
T ss_pred -cchhhhhcccccccCCCC--cccccccccccchhhccccccccccccchhhhhhhhhhhccccccc-cccccccccccc
Confidence 467889999999998743 345679999999999999863 45666778899999999999998 467788999999
Q ss_pred cccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeecccccc-CCCccccccCCCCccEEEec
Q 047768 467 MFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQF-SGQIPVTLGACTSLEYVELQ 545 (1009)
Q Consensus 467 ~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l-~~~~p~~~~~l~~L~~L~L~ 545 (1009)
+.+++..|......+...+........++++.|.+.+..|..+..++.|+.|++++|.+ .+.+|..|..+++|++|+|+
T Consensus 423 ~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~~~~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls 502 (635)
T 4g8a_A 423 EHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLS 502 (635)
T ss_dssp CEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECT
T ss_pred cchhhhhccccccccccccccccccccccccccccccccccccccchhhhhhhhhhcccccccCchhhhhccccCEEECC
Confidence 99999999998877776666666666799999999999999999999999999999985 45678899999999999999
Q ss_pred CcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcccCCCC-Ccc-cCccccccccCCCcCC
Q 047768 546 GNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK-GIF-KNKTGFSIVGNGKLCG 623 (1009)
Q Consensus 546 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~~~-~~~~~~~~~~n~~lc~ 623 (1009)
+|+|++.+|.+|+++++|++|+|++|+|++..|..|..+++|++|||++|+|++.+|.. ..+ .++....+.+|++.|.
T Consensus 503 ~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np~~C~ 582 (635)
T 4g8a_A 503 QCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACT 582 (635)
T ss_dssp TSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCCBCCS
T ss_pred CCccCCcChHHHcCCCCCCEEECCCCcCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCCCccc
Confidence 99999999999999999999999999999988999999999999999999999988864 222 4566678899999995
No 37
>4g31_A Eukaryotic translation initiation factor 2-alpha; deletion mutant, catalytic domain, synthetic inhibitor, TRAN transferase inhibitor complex; HET: 0WH; 2.28A {Homo sapiens} PDB: 4g34_A*
Probab=100.00 E-value=8.6e-47 Score=410.10 Aligned_cols=263 Identities=23% Similarity=0.381 Sum_probs=191.3
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc-chHHHHHHHHHHHhcCCCCcceEEeeeecccc-------
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG-GSKSFAAECEALRSIRHRNLIKIVTICSSIDF------- 772 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------- 772 (1009)
++|++.+.||+|+||+||+|+++.+|+.||||+++..... ..+.+.+|+++|++++|||||++++++.....
T Consensus 5 ~dy~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~i~~~~~~~~~~~~~~E~~il~~l~HpnIV~~~~~~~~~~~~~~~~~~ 84 (299)
T 4g31_A 5 TDFEPIQCLGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLEKNTTEKLQPS 84 (299)
T ss_dssp HHEEEEEEEEECC--EEEEEEETTTCCEEEEEEEEECSSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEEC--------
T ss_pred hhCEEeeEEecCCCeEEEEEEECCCCCEEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEecCcccccccc
Confidence 4689999999999999999999999999999999754432 34678999999999999999999998764321
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceE
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~k 852 (1009)
......|+|||||++|+|.+++..+... ...++..++.++.|++.||+|||++ +||||||||+|||++.++.+|
T Consensus 85 ~~~~~l~ivmE~~~gg~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~al~ylH~~---~IiHRDlKp~NILl~~~~~vK 158 (299)
T 4g31_A 85 SPKVYLYIQMQLCRKENLKDWMNGRCTI---EERERSVCLHIFLQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVK 158 (299)
T ss_dssp --CEEEEEEEECCCSCCHHHHHHTCCSG---GGSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred CCCcEEEEEEecCCCCcHHHHHHhcCCC---ChhHHHHHHHHHHHHHHHHHHHHHC---cCccccCcHHHeEECCCCcEE
Confidence 1233578999999999999999875431 2356777899999999999999999 999999999999999999999
Q ss_pred EeccccccccCCCCCCCcc----ccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCc
Q 047768 853 VSDFGLAKFLSASPLGNVV----ETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGL 928 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~----~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~ 928 (1009)
|+|||+|+........... .......+.+||+.|||||++.+..|+.++||||+||++|||++ ||......
T Consensus 159 l~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyell~---Pf~~~~~~-- 233 (299)
T 4g31_A 159 VGDFGLVTAMDQDEEEQTVLTPMPAYARHTGQVGTKLYMSPEQIHGNSYSHKVDIFSLGLILFELLY---PFSTQMER-- 233 (299)
T ss_dssp ECCCCCC--------------------------CCCTTSCHHHHTTCCCCTHHHHHHHHHHHHHHHS---CCSSHHHH--
T ss_pred EccCccceecCCCccccccccccccccccCCcccCccccCHHHHcCCCCCCHHHHHHHHHHHHHHcc---CCCCccHH--
Confidence 9999999987653221111 11123345689999999999999999999999999999999996 77532110
Q ss_pred cHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 929 TLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
. .. +..+......+. ..+......+++.+||+.||++|||+.|+++
T Consensus 234 -~-~~--------~~~~~~~~~p~~-----------~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 279 (299)
T 4g31_A 234 -V-RT--------LTDVRNLKFPPL-----------FTQKYPCEYVMVQDMLSPSPMERPEAINIIE 279 (299)
T ss_dssp -H-HH--------HHHHHTTCCCHH-----------HHHHCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred -H-HH--------HHHHhcCCCCCC-----------CcccCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 0 00 011111111000 1122234568999999999999999999976
No 38
>3ubd_A Ribosomal protein S6 kinase alpha-3; kinase-inhibitor complex, induced FIT, transferase-transfera inhibitor complex; HET: SL0; 1.53A {Mus musculus} PDB: 4el9_A* 3g51_A* 2z7q_A* 2z7r_A* 2z7s_A*
Probab=100.00 E-value=2.6e-47 Score=411.72 Aligned_cols=243 Identities=23% Similarity=0.279 Sum_probs=191.7
Q ss_pred ccCccCCcccccCCceEEEEEEe---cCCeEEEEEEeeccc--ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLH---ENGMLVAVKVINLEQ--KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
++|++.+.||+|+||+||+|+.. .+++.||||+++... ......+.+|+++|++++|||||++++++.. .
T Consensus 24 ~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~~~~~~~~~~~~~E~~il~~l~HpnIv~l~~~~~~-----~ 98 (304)
T 3ubd_A 24 SQFELLKVLGQGSFGKVFLVKKISGSDARQLYAMKVLKKATLKVRDRVRTKMERDILVEVNHPFIVKLHYAFQT-----E 98 (304)
T ss_dssp GGEEEEEEEECGGGCEEEEEEECSSTTTTCEEEEEEEESEEEEEEECC------CCCCCCCCTTEECEEEEEEE-----T
T ss_pred cccEEEEEEecCCCeEEEEEEEccCCCCCEEEEEEEEehHHcChHHHHHHHHHHHHHHHCCCCCCCeEEEEEEE-----C
Confidence 57999999999999999999884 467899999996442 2234578899999999999999999999754 3
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
+..|+|||||++|+|.+++.+... +++.++..++.|++.||+|||++ +||||||||+|||++.++.+||+|
T Consensus 99 ~~~~ivmEy~~gg~L~~~l~~~~~------l~e~~~~~~~~qi~~aL~ylH~~---~IiHRDlKp~NILl~~~g~vKl~D 169 (304)
T 3ubd_A 99 GKLYLILDFLRGGDLFTRLSKEVM------FTEEDVKFYLAELALALDHLHSL---GIIYRDLKPENILLDEEGHIKLTD 169 (304)
T ss_dssp TEEEEEECCCTTCEEHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTSCEEEES
T ss_pred CEEEEEEEcCCCCCHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHeEEcCCCCEEecc
Confidence 788999999999999999987653 99999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+|+...... ......+||+.|||||++.+..|+.++||||+||++|||+||+.||.... ..+...
T Consensus 170 FGla~~~~~~~--------~~~~~~~GT~~YmAPE~~~~~~y~~~~DiwSlGvilyemltG~~PF~~~~-----~~~~~~ 236 (304)
T 3ubd_A 170 FGLSKESIDHE--------KKAYSFCGTVEYMAPEVVNRRGHTQSADWWSFGVLMFEMLTGTLPFQGKD-----RKETMT 236 (304)
T ss_dssp SEEEEC-------------CCCCSCCCCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHH
T ss_pred cccceeccCCC--------ccccccccCcccCCHHHhccCCCCCCCcccchHHHHHHHHhCCCCCCCcC-----HHHHHH
Confidence 99998654321 22335789999999999999999999999999999999999999997432 122221
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEM 990 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~ 990 (1009)
...... . ..+. ....++.+++.+||+.||++|||+
T Consensus 237 ~i~~~~--------~-~~p~-----------~~s~~~~~li~~~L~~dP~~R~ta 271 (304)
T 3ubd_A 237 MILKAK--------L-GMPQ-----------FLSPEAQSLLRMLFKRNPANRLGA 271 (304)
T ss_dssp HHHHCC--------C-CCCT-----------TSCHHHHHHHHHHTCSSGGGSTTC
T ss_pred HHHcCC--------C-CCCC-----------cCCHHHHHHHHHHcccCHHHCCCC
Confidence 111110 0 0010 122357799999999999999995
No 39
>4b99_A Mitogen-activated protein kinase 7; transferase, inhibitor; HET: R4L; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.4e-44 Score=405.98 Aligned_cols=280 Identities=22% Similarity=0.264 Sum_probs=204.5
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeecc-ccCCCce
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSI-DFKGVDF 777 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~~~~ 777 (1009)
++|.+.+.||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|+++|++++|||||++++++... .+.....
T Consensus 54 ~~Y~~~~~lG~G~fG~V~~a~~~~t~~~vAiK~i~~~~~~~~~~~~~~~Ei~il~~l~HpnIv~l~~~~~~~~~~~~~~~ 133 (398)
T 4b99_A 54 DEYEIIETIGNGAYGVVSSARRRLTGQQVAIKKIPNAFDVVTNAKRTLRELKILKHFKHDNIIAIKDILRPTVPYGEFKS 133 (398)
T ss_dssp SSEEEEEEEEECSSCEEEEEEETTTCCEEEEEEETTTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSSCTTTCCC
T ss_pred CCeEEEEEEecccCeEEEEEEECCCCCEEEEEEECccccchHHHHHHHHHHHHHHhcCCCCcceEeeeeecccccccCCE
Confidence 579999999999999999999999999999999964432 2245788999999999999999999987643 2344567
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.|+|||||+ |+|.+++.... .+++.++..++.|++.||+|||++ +||||||||+|||++.++.+||+|||
T Consensus 134 ~~ivmE~~~-g~L~~~i~~~~------~l~~~~~~~~~~qil~al~ylH~~---~iiHRDlKP~NIl~~~~~~~Ki~DFG 203 (398)
T 4b99_A 134 VYVVLDLME-SDLHQIIHSSQ------PLTLEHVRYFLYQLLRGLKYMHSA---QVIHRDLKPSNLLVNENCELKIGDFG 203 (398)
T ss_dssp EEEEEECCS-EEHHHHHTSSS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEeCCC-CCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---cCcCCCcCccccccCCCCCEEEeecc
Confidence 899999995 78999998754 399999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
+|+.+..... .........+||+.|||||++.+. .++.++||||+||++|||++|+.||...... ..+..+...
T Consensus 204 la~~~~~~~~----~~~~~~~~~~GT~~Y~APEv~~~~~~~~~~~DiWSlG~il~ell~G~~pF~g~~~~-~~l~~I~~~ 278 (398)
T 4b99_A 204 MARGLCTSPA----EHQYFMTEYVATRWYRAPELMLSLHEYTQAIDLWSVGCIFGEMLARRQLFPGKNYV-HQLQLIMMV 278 (398)
T ss_dssp TCBCC-----------CCCCCSSCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHHTSCSSCCSSHH-HHHHHHHHH
T ss_pred eeeecccCcc----ccccccccceeChHhcCHHHhcCCCCCCChhheehhHHHHHHHHHCCCCCCCCCHH-HHHHHHHHh
Confidence 9987654321 111233457899999999998875 4699999999999999999999999743211 112222211
Q ss_pred hccc--hhhhccCCCCCChhhhhhhccccc-----cHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPE--KVMEIVDPSLLPLEEERTNSRRVR-----NEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~--~~~~~~d~~l~~~~~~r~~~~~~~-----~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.... .....+.................. ......++.+++.+|+..||++|||++|+++
T Consensus 279 ~g~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 344 (398)
T 4b99_A 279 LGTPSPAVIQAVGAERVRAYIQSLPPRQPVPWETVYPGADRQALSLLGRMLRFEPSARISAAAALR 344 (398)
T ss_dssp HCCCCGGGTC-----CHHHHHHSSCCCCCCCHHHHSTTCCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred cCCCChHHhhhhhhhhhhhhhhcCCCcCCCCHHHhCCCCCHHHHHHHHHHCcCChhHCcCHHHHhc
Confidence 1111 111000000000000000000000 0011245679999999999999999999875
No 40
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=100.00 E-value=4.4e-44 Score=429.67 Aligned_cols=460 Identities=19% Similarity=0.219 Sum_probs=324.8
Q ss_pred CCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEee
Q 047768 96 LRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSV 175 (1009)
Q Consensus 96 L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L 175 (1009)
.+++|+++|+++ .+|..+. ++|++|||++|.+++..|..|+++++|++|++++|++++..|..+ ..+++|++|+|
T Consensus 33 ~~~l~ls~~~L~-~ip~~~~--~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L~~L~L 107 (562)
T 3a79_B 33 ESMVDYSNRNLT-HVPKDLP--PRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIRSLDFHVF--LFNQDLEYLDV 107 (562)
T ss_dssp CCEEECTTSCCC-SCCTTSC--TTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCCEECTTTT--TTCTTCCEEEC
T ss_pred CcEEEcCCCCCc-cCCCCCC--CCcCEEECCCCCccccChhhhccCCCccEEECCCCCCCcCCHHHh--CCCCCCCEEEC
Confidence 489999999999 5888765 799999999999998888899999999998888888876556555 55777777777
Q ss_pred cCccCCCCCCcccCCccccceeecccCcccC-CCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCC
Q 047768 176 GDNQLTGQLPASIGNLSALRVIDIRTNRLWG-KIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTG 254 (1009)
Q Consensus 176 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 254 (1009)
++|+++ .+|.. .+++|++|+|++|++++ .+|..|+++++|++|+|++|++++. .+..+++|
T Consensus 108 s~N~l~-~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L------------ 169 (562)
T 3a79_B 108 SHNRLQ-NISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHL------------ 169 (562)
T ss_dssp TTSCCC-EECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTS------------
T ss_pred CCCcCC-ccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhc------------
Confidence 777777 45554 67777777777777765 3456777777777777777777632 23333333
Q ss_pred CCChhhccCCCcccceecccccc--CCCCCCCcCccc--cccccccccccccccc-ccccccccccccccccccccCCCC
Q 047768 255 SLPIEIGKNLPNLRNFVIYTNNF--TGSLPDSFSNAS--NLEVLHLAENQFRGQV-SINFNGLKDLSMLGLATNFLGNGA 329 (1009)
Q Consensus 255 ~ip~~~~~~l~~L~~L~L~~N~l--~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~-~~~f~~l~~L~~L~L~~N~l~~~~ 329 (1009)
+|++|++++|.+ ++..|..|.++. .+ .+++++|.+.+.. ...+..+++|+.++++.|.....
T Consensus 170 -----------~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l-~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~- 236 (562)
T 3a79_B 170 -----------HLSCILLDLVSYHIKGGETESLQIPNTTVL-HLVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQ- 236 (562)
T ss_dssp -----------CEEEEEEEESSCCCCSSSCCEEEECCEEEE-EEEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHH-
T ss_pred -----------eeeEEEeecccccccccCcccccccCcceE-EEEecCccchhhhhhhcccccceEEEecccccccccc-
Confidence 224444444444 444444444432 22 3344455444422 22344455555555555431000
Q ss_pred CCCcchhhhcccccccceEEccCCCCCCcCchhhhhh--cccceEEEcCCCccccCCCccc-----cCcCccCEEEccCC
Q 047768 330 ANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANL--STALIDFNLGKNQIYGTIPPGI-----ANLVNLNSLRMEAN 402 (1009)
Q Consensus 330 ~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~~L~~L~L~~N~l~~~~p~~~-----~~l~~L~~L~L~~N 402 (1009)
........+..+++|+.|+++++.+.+.....+... ...|++|++++|+++|.+|..+ .++++|+.++++.|
T Consensus 237 -~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~ 315 (562)
T 3a79_B 237 -RLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEYLNIYNLTITERIDREEFTYSETALKSLMIEHVKNQ 315 (562)
T ss_dssp -HHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEEEEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEEC
T ss_pred -hHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccEEEEeccEeeccccchhhhcccccchheehhhcccc
Confidence 000122456677888888888887764322221111 1378999999999998888887 77888888888888
Q ss_pred CCCCCCC-CCcCCc---ccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccC
Q 047768 403 RLTGTIP-HVIGEL---KNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTG 478 (1009)
Q Consensus 403 ~l~~~~p-~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 478 (1009)
.+ .+| ..+..+ .+|++|++++|.+.... ....+++|++|++++|++++.+|..+.++++|++|++++|++++
T Consensus 316 ~~--~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~ 391 (562)
T 3a79_B 316 VF--LFSKEALYSVFAEMNIKMLSISDTPFIHMV--CPPSPSSFTFLNFTQNVFTDSVFQGCSTLKRLQTLILQRNGLKN 391 (562)
T ss_dssp CC--SSCHHHHHHHHHTCCCSEEEEESSCCCCCC--CCSSCCCCCEEECCSSCCCTTTTTTCCSCSSCCEEECCSSCCCB
T ss_pred ee--ecChhhhhhhhccCcceEEEccCCCccccc--CccCCCCceEEECCCCccccchhhhhcccCCCCEEECCCCCcCC
Confidence 77 344 333322 56899999999886322 12678889999999999998888888888888776655555542
Q ss_pred CCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccc-cccCCCCccEEEecCccccccccccc
Q 047768 479 ALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPV-TLGACTSLEYVELQGNSFSGTIPQSL 557 (1009)
Q Consensus 479 ~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~ 557 (1009)
. + .+|..++++++|++|++++|++++.+|. .+..+++|+.|+|++|++++.+|..+
T Consensus 392 ~-~----------------------~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l 448 (562)
T 3a79_B 392 F-F----------------------KVALMTKNMSSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSSNMLTGSVFRCL 448 (562)
T ss_dssp T-T----------------------HHHHTTTTCTTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCSSCCCGGGGSSC
T ss_pred c-c----------------------cchhhhcCCCCCCEEECCCCcCCCccChhhhcCcccCCEEECCCCCCCcchhhhh
Confidence 1 0 2345688899999999999999985665 58899999999999999998888776
Q ss_pred ccccccceEcCCCcccccccccccccccccCceecccccCcccCCC--CCcccCccccccccCCCcCC
Q 047768 558 SSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPT--KGIFKNKTGFSIVGNGKLCG 623 (1009)
Q Consensus 558 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~--~~~~~~~~~~~~~~n~~lc~ 623 (1009)
. ++|++|||++|+|+ .+|..+..+++|++|+|++|++++ +|. ...+..+....+.+|++.|.
T Consensus 449 ~--~~L~~L~L~~N~l~-~ip~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~l~~L~~L~l~~N~~~c~ 512 (562)
T 3a79_B 449 P--PKVKVLDLHNNRIM-SIPKDVTHLQALQELNVASNQLKS-VPDGVFDRLTSLQYIWLHDNPWDCT 512 (562)
T ss_dssp C--TTCSEEECCSSCCC-CCCTTTTSSCCCSEEECCSSCCCC-CCTTSTTTCTTCCCEECCSCCBCCC
T ss_pred c--CcCCEEECCCCcCc-ccChhhcCCCCCCEEECCCCCCCC-CCHHHHhcCCCCCEEEecCCCcCCC
Confidence 5 79999999999998 788888899999999999999995 554 34566667778889998884
No 41
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=4.2e-44 Score=415.23 Aligned_cols=410 Identities=21% Similarity=0.280 Sum_probs=209.2
Q ss_pred cCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhh
Q 047768 86 LSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISR 165 (1009)
Q Consensus 86 ~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~ 165 (1009)
+.|.-...++|++|++++|++ |.+|++|++|++|++|+|++|.++|.+|..++++++|+.++++.|..
T Consensus 3 ~~p~~~~~~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~----------- 70 (454)
T 1jl5_A 3 INPRNVSNTFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD----------- 70 (454)
T ss_dssp --------------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------
T ss_pred ccccccccccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------
Confidence 344555678999999999999 79999999999999999999999999999999999988877776532
Q ss_pred ccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHH
Q 047768 166 RLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEI 245 (1009)
Q Consensus 166 ~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 245 (1009)
.++++|++++|++++ +|.. .++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|
T Consensus 71 --~~l~~L~l~~~~l~~-lp~~---~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~-l~~~---~~~L~~L 136 (454)
T 1jl5_A 71 --RQAHELELNNLGLSS-LPEL---PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKA-LSDL---PPLLEYL 136 (454)
T ss_dssp --HTCSEEECTTSCCSC-CCSC---CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSC-CCSC---CTTCCEE
T ss_pred --cCCCEEEecCCcccc-CCCC---cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCc-ccCC---CCCCCEE
Confidence 467888888888885 3442 3678888888888876 5543 3678888888888773 3321 1456666
Q ss_pred HhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccccccccccccccccccccccccc
Q 047768 246 YLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFL 325 (1009)
Q Consensus 246 ~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l 325 (1009)
++++|+++ .+|. +.++++|++|++++|++++ +|..+ .+|++|++++|++++++ .|..
T Consensus 137 ~L~~n~l~-~lp~--~~~l~~L~~L~l~~N~l~~-lp~~~---~~L~~L~L~~n~l~~l~--~~~~-------------- 193 (454)
T 1jl5_A 137 GVSNNQLE-KLPE--LQNSSFLKIIDVDNNSLKK-LPDLP---PSLEFIAAGNNQLEELP--ELQN-------------- 193 (454)
T ss_dssp ECCSSCCS-SCCC--CTTCTTCCEEECCSSCCSC-CCCCC---TTCCEEECCSSCCSSCC--CCTT--------------
T ss_pred ECcCCCCC-CCcc--cCCCCCCCEEECCCCcCcc-cCCCc---ccccEEECcCCcCCcCc--cccC--------------
Confidence 66666666 3552 4456666666666666654 33322 35666666666655532 2344
Q ss_pred CCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCC
Q 047768 326 GNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLT 405 (1009)
Q Consensus 326 ~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 405 (1009)
+++|++|++++|++++ +|.. ...|++|++++|+++ .+| .+..+++|+.|++++|+++
T Consensus 194 ----------------l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~n~l~-~lp-~~~~l~~L~~L~l~~N~l~ 250 (454)
T 1jl5_A 194 ----------------LPFLTAIYADNNSLKK-LPDL----PLSLESIVAGNNILE-ELP-ELQNLPFLTTIYADNNLLK 250 (454)
T ss_dssp ----------------CTTCCEEECCSSCCSS-CCCC----CTTCCEEECCSSCCS-SCC-CCTTCTTCCEEECCSSCCS
T ss_pred ----------------CCCCCEEECCCCcCCc-CCCC----cCcccEEECcCCcCC-ccc-ccCCCCCCCEEECCCCcCC
Confidence 4445555555555443 2211 124555555555555 444 2556666666666666665
Q ss_pred CCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhh
Q 047768 406 GTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQIL 485 (1009)
Q Consensus 406 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~ 485 (1009)
+ +|.. +++|++|++++|++++ +|.. +++|++|++++|++++ +|.. .++|++|++++|++++ ++.
T Consensus 251 ~-l~~~---~~~L~~L~l~~N~l~~-l~~~---~~~L~~L~ls~N~l~~-l~~~---~~~L~~L~l~~N~l~~-i~~--- 314 (454)
T 1jl5_A 251 T-LPDL---PPSLEALNVRDNYLTD-LPEL---PQSLTFLDVSENIFSG-LSEL---PPNLYYLNASSNEIRS-LCD--- 314 (454)
T ss_dssp S-CCSC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCSE-ESCC---CTTCCEEECCSSCCSE-ECC---
T ss_pred c-cccc---ccccCEEECCCCcccc-cCcc---cCcCCEEECcCCccCc-ccCc---CCcCCEEECcCCcCCc-ccC---
Confidence 3 3332 2556666666666664 3432 2456666666666664 2211 1355555555555553 111
Q ss_pred hhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccc--cccccccccccc
Q 047768 486 EITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSG--TIPQSLSSLTSI 563 (1009)
Q Consensus 486 ~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~--~~p~~~~~l~~L 563 (1009)
.......|++++|++++ +|.. +++|++|++++|+++ .+|. .+++|++|+|++|++++ .+|.+++.+
T Consensus 315 -~~~~L~~L~Ls~N~l~~-lp~~---~~~L~~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~L--- 382 (454)
T 1jl5_A 315 -LPPSLEELNVSNNKLIE-LPAL---PPRLERLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVEDL--- 382 (454)
T ss_dssp -CCTTCCEEECCSSCCSC-CCCC---CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCEE---
T ss_pred -CcCcCCEEECCCCcccc-cccc---CCcCCEEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHhh---
Confidence 11122346677777664 4543 466777777777777 3555 35677777777777776 566655543
Q ss_pred ceEcCCCcccccccccccccccccCceecccccCcc--cCCC
Q 047768 564 KELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEG--EVPT 603 (1009)
Q Consensus 564 ~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g--~~p~ 603 (1009)
+.|++.|.+|.. +++|++|++++|+++| .+|.
T Consensus 383 -----~~n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~ 416 (454)
T 1jl5_A 383 -----RMNSHLAEVPEL---PQNLKQLHVETNPLREFPDIPE 416 (454)
T ss_dssp -----ECCC---------------------------------
T ss_pred -----hhcccccccccc---cCcCCEEECCCCcCCccccchh
Confidence 234455555542 3566777777777766 5553
No 42
>4f9c_A Cell division cycle 7-related protein kinase; Ser/Thr protein kinase, transferase, phosphorylation, cell C cell division, mitosis, S phase; HET: 0SX; 2.08A {Homo sapiens} PDB: 4f99_A* 4f9b_A* 4f9a_A*
Probab=100.00 E-value=2.5e-43 Score=393.63 Aligned_cols=208 Identities=23% Similarity=0.331 Sum_probs=171.4
Q ss_pred HhccCccCCcccccCCceEEEEEEe---cCCeEEEEEEeecccccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLH---ENGMLVAVKVINLEQKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 774 (1009)
..++|++.+.||+|+||+||+|+++ .+++.||||++... .....+.+|+++++.+ +||||+++++++..
T Consensus 19 l~~~Y~i~~~lG~G~fg~Vy~a~~~~~~~~~~~vAiK~i~~~--~~~~~~~~E~~~l~~~~~h~nIv~l~~~~~~----- 91 (361)
T 4f9c_A 19 LSNVFKIEDKIGEGTFSSVYLATAQLQVGPEEKIALKHLIPT--SHPIRIAAELQCLTVAGGQDNVMGVKYCFRK----- 91 (361)
T ss_dssp GGGTCEEEEEEEECSSEEEEEEEEEBTTSCEEEEEEEEECTT--SCHHHHHHHHHHHHHTCSBTTBCCCSEEEEE-----
T ss_pred ccCcEEEEEEEecccCcEEEEEEEcccCCCCCEEEEEEEccc--cCHHHHHHHHHHHHHhcCCCCCceEEEEEEE-----
Confidence 3578999999999999999999886 35789999988543 3456788999999998 69999999998654
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC-CceEE
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD-MVAHV 853 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~-~~~kl 853 (1009)
.+..++||||+++|+|.++++. +++.+++.++.|++.||+|||++ +||||||||+|||++.+ +.+||
T Consensus 92 ~~~~~lvmE~~~g~~L~~~~~~---------l~~~~~~~~~~qll~al~ylH~~---gIiHRDiKPeNiLl~~~~~~~kl 159 (361)
T 4f9c_A 92 NDHVVIAMPYLEHESFLDILNS---------LSFQEVREYMLNLFKALKRIHQF---GIVHRDVKPSNFLYNRRLKKYAL 159 (361)
T ss_dssp TTEEEEEEECCCCCCHHHHHTT---------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEE
T ss_pred CCEEEEEEeCCCcccHHHHHcC---------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCcCCHHHeEEeCCCCeEEE
Confidence 3789999999999999999842 88999999999999999999999 99999999999999877 79999
Q ss_pred eccccccccCCCCCCCc--------------------cccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHH
Q 047768 854 SDFGLAKFLSASPLGNV--------------------VETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLE 912 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~--------------------~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~e 912 (1009)
+|||+|+.......... ..........+||+.|||||++.+. .|+.++||||+||++||
T Consensus 160 ~DFGla~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~GT~~Y~APE~l~~~~~y~~~~DiWSlG~il~e 239 (361)
T 4f9c_A 160 VDFGLAQGTHDTKIELLKFVQSEAQQERCSQNKCSICLSRRQQVAPRAGTPGFRAPEVLTKCPNQTTAIDMWSAGVIFLS 239 (361)
T ss_dssp CCCTTCEECTTCSCGGGGGC--------------------------CCCCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHH
T ss_pred CcCCCCcccCCccccccccccccccccccccccccccccccccccccccCccccCHHHHcCCCCCCCccchhhhHHHHHH
Confidence 99999987654321100 0001122346799999999998876 48999999999999999
Q ss_pred HHhCCCCCccccc
Q 047768 913 IFTRRRPTESMFN 925 (1009)
Q Consensus 913 lltg~~p~~~~~~ 925 (1009)
|++|+.||....+
T Consensus 240 ll~G~~Pf~~~~~ 252 (361)
T 4f9c_A 240 LLSGRYPFYKASD 252 (361)
T ss_dssp HHHTCSSSSCCSS
T ss_pred HHHCCCCCCCCCC
Confidence 9999999965433
No 43
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.2e-43 Score=391.97 Aligned_cols=293 Identities=30% Similarity=0.484 Sum_probs=269.2
Q ss_pred cCChhhHHHHHHHHHhcCCCCCCCCCCccCCCCCCCCC--ccceeeCCCC--CeEEEEEeecCCccc--ccCccccCCCC
Q 047768 22 LSNETDCLSLLAIKSQLHDPLGVTSSWNRSACVNLCQH--WTGVTCGRRN--QRVTKLDLRNQSIGG--ILSPYVGNLSF 95 (1009)
Q Consensus 22 ~~~~~d~~aLl~~k~~~~~~~~~~~sW~~~~~~~~c~~--w~gv~C~~~~--~~v~~l~l~~~~l~~--~~~~~~~~l~~ 95 (1009)
.|.++|++||++||+++.||. .+++|+.+ .+|| . |.||+|+..+ ++|+.|+|++++++| .+|+.++++++
T Consensus 2 ~c~~~~~~aL~~~k~~~~~~~-~l~~W~~~--~~~C-~~~w~gv~C~~~~~~~~l~~L~L~~~~l~~~~~~~~~l~~l~~ 77 (313)
T 1ogq_A 2 LCNPQDKQALLQIKKDLGNPT-TLSSWLPT--TDCC-NRTWLGVLCDTDTQTYRVNNLDLSGLNLPKPYPIPSSLANLPY 77 (313)
T ss_dssp CSCHHHHHHHHHHHHHTTCCG-GGTTCCTT--SCTT-TTCSTTEEECCSSSCCCEEEEEEECCCCSSCEECCGGGGGCTT
T ss_pred CCCHHHHHHHHHHHHhcCCcc-cccCCCCC--CCCC-cCCCcceEeCCCCCCceEEEEECCCCCccCCcccChhHhCCCC
Confidence 589999999999999998886 78999764 3556 5 9999998765 799999999999999 99999999999
Q ss_pred CCeeeecC-CcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEe
Q 047768 96 LRYINIAD-NDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLS 174 (1009)
Q Consensus 96 L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~ 174 (1009)
|++|+|++ |++++.+|..|+++++|++|+|++|++++.+|..|+++++|++|++++|.+++.+|..+ ..+++|++|+
T Consensus 78 L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~--~~l~~L~~L~ 155 (313)
T 1ogq_A 78 LNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLDFSYNALSGTLPPSI--SSLPNLVGIT 155 (313)
T ss_dssp CSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEECCSSEEESCCCGGG--GGCTTCCEEE
T ss_pred CCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEeCCCCccCCcCChHH--hcCCCCCeEE
Confidence 99999995 99999999999999999999999999999999999999999999999999999999888 6799999999
Q ss_pred ecCccCCCCCCcccCCcc-ccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccC
Q 047768 175 VGDNQLTGQLPASIGNLS-ALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFT 253 (1009)
Q Consensus 175 L~~n~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 253 (1009)
|++|++++.+|..+++++ +|++|+|++|++++.+|..|..++ |++|+|++|++++..|..|..+++|++|+|++|+++
T Consensus 156 L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~ 234 (313)
T 1ogq_A 156 FDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLEGDASVLFGSDKNTQKIHLAKNSLA 234 (313)
T ss_dssp CCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEEECCGGGCCTTSCCSEEECCSSEEC
T ss_pred CcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCcccCcCCHHHhcCCCCCEEECCCCcee
Confidence 999999999999999998 999999999999999999999998 999999999999999999999999999999999999
Q ss_pred CCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccc
Q 047768 254 GSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNF 324 (1009)
Q Consensus 254 ~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~ 324 (1009)
+.+|. +..+++|++|+|++|++++.+|..|.++++|++|+|++|++++.+|.. ..+++|+.+++++|.
T Consensus 235 ~~~~~--~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~-~~l~~L~~l~l~~N~ 302 (313)
T 1ogq_A 235 FDLGK--VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQG-GNLQRFDVSAYANNK 302 (313)
T ss_dssp CBGGG--CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCS-TTGGGSCGGGTCSSS
T ss_pred eecCc--ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCC-ccccccChHHhcCCC
Confidence 66665 456899999999999999999999999999999999999999877765 667777777776665
No 44
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=8.8e-43 Score=407.73 Aligned_cols=379 Identities=18% Similarity=0.191 Sum_probs=251.6
Q ss_pred CCCCeeeecCCcCCccCCccccCccccccccccccccCCCC-CCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCe
Q 047768 94 SFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRI-PTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQG 172 (1009)
Q Consensus 94 ~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~ 172 (1009)
++|++|+|++|.+++..|..|+++++|++|+|++|.+.+.+ |..|+++++|++|
T Consensus 30 ~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L------------------------- 84 (455)
T 3v47_A 30 AHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIIL------------------------- 84 (455)
T ss_dssp TTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEE-------------------------
T ss_pred CccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccCCEE-------------------------
Confidence 66777888887777766777777777777777777776444 3345554444444
Q ss_pred EeecCccCCCCCCcccCCccccceeecccCcccCCCCcc--cccccccccccccCccCCCCCCCcccCCChHHHHHhhCC
Q 047768 173 LSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPIT--LSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGN 250 (1009)
Q Consensus 173 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 250 (1009)
+|++|++++..|..|+++++|++|+|++|++++..|.. |..+++|++|+|++|++++..|..
T Consensus 85 -~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--------------- 148 (455)
T 3v47_A 85 -KLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPAS--------------- 148 (455)
T ss_dssp -ECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCG---------------
T ss_pred -eCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCccc---------------
Confidence 44445555556677777788888888888777644443 777777777777777776444433
Q ss_pred ccCCCCChhhccCCCcccceeccccccCCCCCCCcCcc--cccccccccccccccccccccccccccccccccccccCCC
Q 047768 251 RFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNA--SNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNG 328 (1009)
Q Consensus 251 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l--~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~ 328 (1009)
++.++++|++|++++|.+++..|..+..+ .+|+.|++++|.+.+..+..+..
T Consensus 149 ---------~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~----------------- 202 (455)
T 3v47_A 149 ---------FFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW----------------- 202 (455)
T ss_dssp ---------GGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-----------------
T ss_pred ---------ccCCCCcccEEeCCCCcccccChhhhhccccccccccccccCcccccchhhccc-----------------
Confidence 23445566666666666666666666555 56777777777766544332210
Q ss_pred CCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhc--ccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCC
Q 047768 329 AANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLS--TALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTG 406 (1009)
Q Consensus 329 ~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 406 (1009)
.....+..+++|++|++++|++++..|..+.... ..++.|++++|.+.+.. +..+.+.+
T Consensus 203 -----~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~--------------~~~~~~~~ 263 (455)
T 3v47_A 203 -----EKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSS--------------FGHTNFKD 263 (455)
T ss_dssp -----HHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCC--------------TTCCSSCC
T ss_pred -----cccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccc--------------cchhhhcc
Confidence 0011233457788888888888877777665542 33444444444433210 11112221
Q ss_pred CCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhh
Q 047768 407 TIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILE 486 (1009)
Q Consensus 407 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~ 486 (1009)
..+..+..+ ..++|++|++++|++++.+|..+..+++|++
T Consensus 264 ~~~~~~~~~----------------------~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~------------------ 303 (455)
T 3v47_A 264 PDNFTFKGL----------------------EASGVKTCDLSKSKIFALLKSVFSHFTDLEQ------------------ 303 (455)
T ss_dssp CCTTTTGGG----------------------TTSCCCEEECCSSCCCEECTTTTTTCTTCCE------------------
T ss_pred Ccccccccc----------------------cccCceEEEecCccccccchhhcccCCCCCE------------------
Confidence 222222111 1245666666666666666666666666554
Q ss_pred hccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceE
Q 047768 487 ITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKEL 566 (1009)
Q Consensus 487 ~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 566 (1009)
|++++|++++..|..|+++++|++|+|++|++++..|..++.+++|+.|+|++|++++..|.+|+++++|++|
T Consensus 304 -------L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 376 (455)
T 3v47_A 304 -------LTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKEL 376 (455)
T ss_dssp -------EECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEE
T ss_pred -------EECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccChhhccccccccEE
Confidence 4444444444556677788889999999999988888899999999999999999998889999999999999
Q ss_pred cCCCcccccccccccccccccCceecccccCcccCCCCC
Q 047768 567 DLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKG 605 (1009)
Q Consensus 567 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~ 605 (1009)
+|++|+|++..+..+..+++|++|++++|+++|.+|...
T Consensus 377 ~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~ 415 (455)
T 3v47_A 377 ALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCPRID 415 (455)
T ss_dssp ECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTTTTH
T ss_pred ECCCCccccCCHhHhccCCcccEEEccCCCcccCCCcch
Confidence 999999998777778999999999999999999999643
No 45
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=100.00 E-value=9.9e-43 Score=403.68 Aligned_cols=420 Identities=21% Similarity=0.227 Sum_probs=239.6
Q ss_pred CeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEec
Q 047768 70 QRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSA 149 (1009)
Q Consensus 70 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 149 (1009)
.+++.|+++++.+ |.+|++++++++|++|++++|.++|.+|..++++++|+.++++.|.. .++++|++
T Consensus 11 ~~L~~L~l~~n~l-~~iP~~i~~L~~L~~L~l~~n~~~~~~p~~~~~l~~L~~l~l~~c~~-----------~~l~~L~l 78 (454)
T 1jl5_A 11 TFLQEPLRHSSNL-TEMPVEAENVKSKTEYYNAWSEWERNAPPGNGEQREMAVSRLRDCLD-----------RQAHELEL 78 (454)
T ss_dssp ------------------------CCHHHHHHHHHHHHHTSCTTSCCCHHHHHHHHHHHHH-----------HTCSEEEC
T ss_pred ccchhhhcccCch-hhCChhHhcccchhhhhccCCcccccCCcccccchhcchhhhhhhhc-----------cCCCEEEe
Confidence 4788999999999 89999999999999999999999999999999999998887777653 45777888
Q ss_pred ccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCC
Q 047768 150 HRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFS 229 (1009)
Q Consensus 150 ~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 229 (1009)
++|.+++ +|.. ..+|++|++++|++++ +|.. +++|++|++++|++++. |.. .++|++|++++|+++
T Consensus 79 ~~~~l~~-lp~~-----~~~L~~L~l~~n~l~~-lp~~---~~~L~~L~l~~n~l~~l-~~~---~~~L~~L~L~~n~l~ 144 (454)
T 1jl5_A 79 NNLGLSS-LPEL-----PPHLESLVASCNSLTE-LPEL---PQSLKSLLVDNNNLKAL-SDL---PPLLEYLGVSNNQLE 144 (454)
T ss_dssp TTSCCSC-CCSC-----CTTCSEEECCSSCCSS-CCCC---CTTCCEEECCSSCCSCC-CSC---CTTCCEEECCSSCCS
T ss_pred cCCcccc-CCCC-----cCCCCEEEccCCcCCc-cccc---cCCCcEEECCCCccCcc-cCC---CCCCCEEECcCCCCC
Confidence 8887764 3331 2577888888888886 5643 36788888888888642 221 157888888888888
Q ss_pred CCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccccccccc
Q 047768 230 GTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINF 309 (1009)
Q Consensus 230 ~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f 309 (1009)
+ +| .|.++++|++|++++|+++ .+|.. .++|++|++++|++++ +| .|+++++|++|++++|++++++..
T Consensus 145 ~-lp-~~~~l~~L~~L~l~~N~l~-~lp~~----~~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~~-- 213 (454)
T 1jl5_A 145 K-LP-ELQNSSFLKIIDVDNNSLK-KLPDL----PPSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPDL-- 213 (454)
T ss_dssp S-CC-CCTTCTTCCEEECCSSCCS-CCCCC----CTTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCCC--
T ss_pred C-Cc-ccCCCCCCCEEECCCCcCc-ccCCC----cccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCCC--
Confidence 5 66 5888888888888888887 46643 3588888898888887 45 588888999999999988864432
Q ss_pred ccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCcccc
Q 047768 310 NGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIA 389 (1009)
Q Consensus 310 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~ 389 (1009)
.++|+.|++++|.+..++. +..+++|++|++++|++++ +|.. ...|+.|++++|++++ +|..
T Consensus 214 --~~~L~~L~l~~n~l~~lp~--------~~~l~~L~~L~l~~N~l~~-l~~~----~~~L~~L~l~~N~l~~-l~~~-- 275 (454)
T 1jl5_A 214 --PLSLESIVAGNNILEELPE--------LQNLPFLTTIYADNNLLKT-LPDL----PPSLEALNVRDNYLTD-LPEL-- 275 (454)
T ss_dssp --CTTCCEEECCSSCCSSCCC--------CTTCTTCCEEECCSSCCSS-CCSC----CTTCCEEECCSSCCSC-CCCC--
T ss_pred --cCcccEEECcCCcCCcccc--------cCCCCCCCEEECCCCcCCc-cccc----ccccCEEECCCCcccc-cCcc--
Confidence 2467777777776664331 4566777777777777764 3321 2456666666666664 3432
Q ss_pred CcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccc-cccccccccCcccccccCCCCCCCCCccc
Q 047768 390 NLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNL-TLLTYLSFGANNLQGNIPFSLGNCKNLMF 468 (1009)
Q Consensus 390 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 468 (1009)
+++|+.|++++|++++. |.. .++|++|++++|++++ ++ .+ ++|++|++++|++++ +|.. +++|+
T Consensus 276 -~~~L~~L~ls~N~l~~l-~~~---~~~L~~L~l~~N~l~~-i~----~~~~~L~~L~Ls~N~l~~-lp~~---~~~L~- 340 (454)
T 1jl5_A 276 -PQSLTFLDVSENIFSGL-SEL---PPNLYYLNASSNEIRS-LC----DLPPSLEELNVSNNKLIE-LPAL---PPRLE- 340 (454)
T ss_dssp -CTTCCEEECCSSCCSEE-SCC---CTTCCEEECCSSCCSE-EC----CCCTTCCEEECCSSCCSC-CCCC---CTTCC-
T ss_pred -cCcCCEEECcCCccCcc-cCc---CCcCCEEECcCCcCCc-cc----CCcCcCCEEECCCCcccc-cccc---CCcCC-
Confidence 25666666666666642 111 1456666666666653 22 12 356666666666664 4433 23333
Q ss_pred cccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCC--CccccccCCCCccEEEecC
Q 047768 469 FFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSG--QIPVTLGACTSLEYVELQG 546 (1009)
Q Consensus 469 l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~L~~ 546 (1009)
.|++++|+++ .+|. .+++|++|++++|++++ .+|..++. |+.
T Consensus 341 ------------------------~L~L~~N~l~-~lp~---~l~~L~~L~L~~N~l~~l~~ip~~l~~--------L~~ 384 (454)
T 1jl5_A 341 ------------------------RLIASFNHLA-EVPE---LPQNLKQLHVEYNPLREFPDIPESVED--------LRM 384 (454)
T ss_dssp ------------------------EEECCSSCCS-CCCC---CCTTCCEEECCSSCCSSCCCCCTTCCE--------EEC
T ss_pred ------------------------EEECCCCccc-cccc---hhhhccEEECCCCCCCcCCCChHHHHh--------hhh
Confidence 4777777777 4665 47899999999999998 67776653 456
Q ss_pred cccccccccccccccccceEcCCCccccc--ccccccccccccCceecccccCcccCCCC
Q 047768 547 NSFSGTIPQSLSSLTSIKELDLSQNNFSG--QIPKYLENLSFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 547 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~l~g~~p~~ 604 (1009)
|.+.|.+|.. +++|+.||+++|++++ .+|.+ |+.|.+++|.+.+.+|..
T Consensus 385 n~~~~~i~~~---~~~L~~L~ls~N~l~~~~~iP~s------l~~L~~~~~~~~~~~~~~ 435 (454)
T 1jl5_A 385 NSHLAEVPEL---PQNLKQLHVETNPLREFPDIPES------VEDLRMNSERVVDPYEFA 435 (454)
T ss_dssp CC----------------------------------------------------------
T ss_pred cccccccccc---cCcCCEEECCCCcCCccccchhh------HhheeCcCcccCCccccC
Confidence 7888888874 5789999999999997 67754 566778999999887753
No 46
>3v5w_A G-protein coupled receptor kinase 2; inhibitor complex, protein kinase, beta propeller, RGS homol domain; HET: 8PR; 2.07A {Homo sapiens} PDB: 3cik_A* 3krw_A* 3krx_A* 1omw_A 1ym7_A 2bcj_A* 3uzs_A 3uzt_A 3pvu_A* 3psc_A* 3pvw_A* 1bak_A
Probab=100.00 E-value=2.7e-42 Score=403.80 Aligned_cols=250 Identities=24% Similarity=0.290 Sum_probs=198.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHH---HHHHHhcCCCCcceEEeeeeccccC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAE---CEALRSIRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E---~~~l~~l~h~niv~l~~~~~~~~~~ 773 (1009)
.++|.+.+.||+|+||+||+|+++.+|+.||||+++... ........+| +++++.++|||||++++++..
T Consensus 188 lddf~i~k~LG~G~fG~V~la~~~~tg~~~AiK~i~K~~i~~~~~~~~~~~E~~~l~ll~~~~HP~IV~l~~~f~~---- 263 (689)
T 3v5w_A 188 MNDFSVHRIIGRGGFGEVYGCRKADTGKMYAMKCLDKKRIKMKQGETLALNERIMLSLVSTGDCPFIVCMSYAFHT---- 263 (689)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHSSSCCTTBCCEEEEEEC----
T ss_pred hHHeEEEEEEecccCeEEEEEEECCCCCEEEEEEEeHHHcchhhhHHHHHHHHHHHHHHhhCCCCCEeEEEEEEEE----
Confidence 468999999999999999999999999999999996432 2223334444 556667799999999998654
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEE
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHV 853 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl 853 (1009)
....|+||||++||+|.+++.+... +++..++.++.||+.||+|||++ +||||||||+|||++.+|.+||
T Consensus 264 -~~~lylVmEy~~GGdL~~~l~~~~~------l~E~~a~~y~~qIl~aL~yLH~~---gIiHRDLKPeNILld~~G~vKL 333 (689)
T 3v5w_A 264 -PDKLSFILDLMNGGDLHYHLSQHGV------FSEADMRFYAAEIILGLEHMHNR---FVVYRDLKPANILLDEHGHVRI 333 (689)
T ss_dssp -SSEEEEEECCCCSCBHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTSCEEE
T ss_pred -CCEEEEEEecCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CccccCCchHHeEEeCCCCEEe
Confidence 4789999999999999999987653 99999999999999999999999 9999999999999999999999
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHH
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~ 932 (1009)
+|||+|+..... .....+||+.|||||++.+ ..|+.++||||+||++|||++|+.||......+ ..+
T Consensus 334 ~DFGlA~~~~~~----------~~~t~~GTp~YmAPEvl~~~~~y~~~vDiWSLGvilYEmLtG~~PF~~~~~~~--~~~ 401 (689)
T 3v5w_A 334 SDLGLACDFSKK----------KPHASVGTHGYMAPEVLQKGVAYDSSADWFSLGCMLFKLLRGHSPFRQHKTKD--KHE 401 (689)
T ss_dssp CCCTTCEECSSC----------CCCSCCSCGGGCCHHHHSTTCCCCTHHHHHHHHHHHHHHHHSSCTTCGGGCCC--HHH
T ss_pred cccceeeecCCC----------CCCCccCCcCccCHHHHhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH--HHH
Confidence 999999876542 2234689999999999975 579999999999999999999999997543221 222
Q ss_pred HHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRME-----MTDVVV 995 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt-----~~evl~ 995 (1009)
.......... ..+ .....++.+++.+|++.||++|++ ++||.+
T Consensus 402 i~~~i~~~~~---------~~p-----------~~~S~~a~dLI~~lL~~dP~~Rl~~~~~ga~ei~~ 449 (689)
T 3v5w_A 402 IDRMTLTMAV---------ELP-----------DSFSPELRSLLEGLLQRDVNRRLGCLGRGAQEVKE 449 (689)
T ss_dssp HHHHHHHCCC---------CCC-----------TTSCHHHHHHHHHHTCSCGGGCTTCSSSTHHHHTT
T ss_pred HHHhhcCCCC---------CCC-----------ccCCHHHHHHHHHHccCCHhHCCCCCCCCHHHHhc
Confidence 2111111100 000 011234679999999999999998 566643
No 47
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=100.00 E-value=1.6e-42 Score=405.61 Aligned_cols=391 Identities=18% Similarity=0.191 Sum_probs=307.0
Q ss_pred CCCCCCCCccc--eeeCCCC--------CeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccC-CccccCcccc
Q 047768 52 ACVNLCQHWTG--VTCGRRN--------QRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEI-PDRIGNLFRL 120 (1009)
Q Consensus 52 ~~~~~c~~w~g--v~C~~~~--------~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~-p~~~~~l~~L 120 (1009)
+|+..| .|.+ |.|+... .+++.|+|++|.+++..+..|+++++|++|+|++|.+.+.+ |..|.++++|
T Consensus 3 p~~~~c-~~~~~~~~c~~~~l~~lp~l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L 81 (455)
T 3v47_A 3 PGTSEC-SVIGYNAICINRGLHQVPELPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSL 81 (455)
T ss_dssp ----CC-EEETTEEECCSSCCSSCCCCCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTC
T ss_pred Ccccee-EEEccccCcCCCCcccCCCCCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccceECcccccccccC
Confidence 355666 5666 8898643 57999999999999999999999999999999999998776 5679999999
Q ss_pred ccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcc-cCCccccceeec
Q 047768 121 ETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPAS-IGNLSALRVIDI 199 (1009)
Q Consensus 121 ~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L 199 (1009)
++|||++|++++..|..|+++++|++|++++|++++.+|.......+++|++|+|++|++++..|.. ++++++|++|++
T Consensus 82 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L 161 (455)
T 3v47_A 82 IILKLDYNQFLQLETGAFNGLANLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDL 161 (455)
T ss_dssp CEEECTTCTTCEECTTTTTTCTTCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEEC
T ss_pred CEEeCCCCccCccChhhccCcccCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeC
Confidence 9999999999999999999999999999999999887776633467889999999999999887776 889999999999
Q ss_pred ccCcccCCCCcccccc--cccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceecccccc
Q 047768 200 RTNRLWGKIPITLSQL--TSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNF 277 (1009)
Q Consensus 200 ~~N~l~~~~p~~~~~l--~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l 277 (1009)
++|++.+..|..+..+ .+|+.|++++|.+.+..+..+.. .... . ...+++|++|++++|++
T Consensus 162 ~~n~l~~~~~~~l~~l~~~~L~~L~l~~n~l~~~~~~~~~~-------~~~~---------~-~~~~~~L~~L~Ls~n~l 224 (455)
T 3v47_A 162 TFNKVKSICEEDLLNFQGKHFTLLRLSSITLQDMNEYWLGW-------EKCG---------N-PFKNTSITTLDLSGNGF 224 (455)
T ss_dssp TTCCBSCCCTTTSGGGTTCEEEEEECTTCBCTTCSTTCTTH-------HHHC---------C-TTTTCEEEEEECTTSCC
T ss_pred CCCcccccChhhhhccccccccccccccCcccccchhhccc-------cccc---------c-ccccceeeeEecCCCcc
Confidence 9999988888888877 78899999999888544433210 0000 0 11245666666666666
Q ss_pred CCCCCCCcCcc---cccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcc--cccccceEEccC
Q 047768 278 TGSLPDSFSNA---SNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLT--NCTKLQYLYLAD 352 (1009)
Q Consensus 278 ~~~~p~~~~~l---~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~--~l~~L~~L~L~~ 352 (1009)
++..|..|..+ ++|+.|++++|.+.+... ..+.+..... ..+. ..++|++|++++
T Consensus 225 ~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~--------------~~~~~~~~~~------~~~~~~~~~~L~~L~l~~ 284 (455)
T 3v47_A 225 KESMAKRFFDAIAGTKIQSLILSNSYNMGSSF--------------GHTNFKDPDN------FTFKGLEASGVKTCDLSK 284 (455)
T ss_dssp CHHHHHHHHHHTTTCCEEEEECTTCTTTSCCT--------------TCCSSCCCCT------TTTGGGTTSCCCEEECCS
T ss_pred cccchhhhhccccccceeeEeecccccccccc--------------chhhhccCcc------cccccccccCceEEEecC
Confidence 66555555443 677777777776554211 1111111111 0111 236889999999
Q ss_pred CCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCC
Q 047768 353 NGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTI 432 (1009)
Q Consensus 353 N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 432 (1009)
|.+++..|..+..+ +.|++|+|++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|++++..
T Consensus 285 n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 363 (455)
T 3v47_A 285 SKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDSRMFENLDKLEVLDLSYNHIRALG 363 (455)
T ss_dssp SCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGGTTCTTCCEEECCSSCCCEEC
T ss_pred ccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcChhHhcCcccCCEEECCCCcccccC
Confidence 99988888888777 57999999999999888888999999999999999998888888999999999999999999888
Q ss_pred CcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCc
Q 047768 433 PSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALP 481 (1009)
Q Consensus 433 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p 481 (1009)
|..|.++++|++|++++|++++..+..+..+++|++|++++|++++..|
T Consensus 364 ~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~ 412 (455)
T 3v47_A 364 DQSFLGLPNLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWDCSCP 412 (455)
T ss_dssp TTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCCTT
T ss_pred hhhccccccccEEECCCCccccCCHhHhccCCcccEEEccCCCcccCCC
Confidence 8889999999999999999997666778889999988888888887776
No 48
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A
Probab=100.00 E-value=2.5e-42 Score=409.22 Aligned_cols=253 Identities=19% Similarity=0.273 Sum_probs=206.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|++.+.||+|+||+||+|+++.+|+.||||++........+.+.+|+++|+.++||||+++++++.. ....+
T Consensus 156 l~~Y~i~~~lG~G~fg~V~~~~~~~tg~~~AiK~i~~~~~~~~~~~~~Ei~il~~l~hpnIv~l~~~~~~-----~~~~~ 230 (573)
T 3uto_A 156 LDHYDIHEELGTGAFGVVHRVTERATGNNFAAKFVMTPHESDKETVRKEIQTMSVLRHPTLVNLHDAFED-----DNEMV 230 (573)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHHHTCCTTBCCEEEEEEC-----SSEEE
T ss_pred ccccEEEEEEeeccCeEEEEEEECCCCCEEEEEEEeccchhhHHHHHHHHHHHHhCCCCCCCeEEEEEEE-----CCEEE
Confidence 3689999999999999999999999999999999976554456788999999999999999999998654 47899
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC--CceEEeccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD--MVAHVSDFG 857 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~--~~~kl~DfG 857 (1009)
+|||||++|+|.+++..... .+++.++..++.||+.||.|||++ +|+||||||+|||++.+ +.+||+|||
T Consensus 231 iv~E~~~gg~L~~~i~~~~~-----~l~e~~~~~~~~qi~~al~ylH~~---~iiHRDlKp~Nill~~~~~~~vKl~DFG 302 (573)
T 3uto_A 231 MIYEFMSGGELFEKVADEHN-----KMSEDEAVEYMRQVCKGLCHMHEN---NYVHLDLKPENIMFTTKRSNELKLIDFG 302 (573)
T ss_dssp EEEECCCCCBHHHHHTCTTS-----CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCS
T ss_pred EEEeecCCCcHHHHHHHhCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeccCChhhccccCCCCCCEEEeecc
Confidence 99999999999999976543 389999999999999999999999 99999999999999854 899999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
+|+.+... ......+||+.|||||++.+..|+.++||||+||++|||++|+.||..... .+.....
T Consensus 303 ~a~~~~~~---------~~~~~~~GT~~y~APEv~~~~~y~~~~DiWSlGvilyeml~G~~Pf~~~~~-----~~~~~~i 368 (573)
T 3uto_A 303 LTAHLDPK---------QSVKVTTGTAEFAAPEVAEGKPVGYYTDMWSVGVLSYILLSGLSPFGGEND-----DETLRNV 368 (573)
T ss_dssp SCEECCTT---------SEEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHH
T ss_pred ceeEccCC---------CceeeeEECccccCHHHhCCCCCCcHHHHHHHHHHHHHHHHCCCCCCCcCH-----HHHHHHH
Confidence 99977543 223346799999999999999999999999999999999999999974321 1111111
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
......... . .......++.+++.+|++.||++|||+.|+++
T Consensus 369 --------~~~~~~~~~-~-------~~~~~s~~~~dli~~~L~~dp~~R~t~~e~l~ 410 (573)
T 3uto_A 369 --------KSCDWNMDD-S-------AFSGISEDGKDFIRKLLLADPNTRMTIHQALE 410 (573)
T ss_dssp --------HTTCCCCCS-G-------GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred --------HhCCCCCCc-c-------cccCCCHHHHHHHHHHccCChhHCcCHHHHhc
Confidence 110000000 0 00012235679999999999999999999976
No 49
>3uim_A Brassinosteroid insensitive 1-associated receptor; kinase, protein kinase, transferase; HET: SEP TPO ANP; 2.20A {Arabidopsis thaliana} PDB: 3ulz_A* 3tl8_A*
Probab=100.00 E-value=4.3e-41 Score=374.91 Aligned_cols=288 Identities=38% Similarity=0.627 Sum_probs=231.2
Q ss_pred cCCccCHHHHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEe
Q 047768 687 QFPMVSYKELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVT 765 (1009)
Q Consensus 687 ~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~ 765 (1009)
....+++.++....++|.+.+.||+|+||.||+|.+. +++.||||+++.... .....+.+|++++++++||||+++++
T Consensus 16 ~~~~~~~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~ 94 (326)
T 3uim_A 16 QLKRFSLRELQVASDNFSNKNILGRGGFGKVYKGRLA-DGTLVAVKRLKEERTQGGELQFQTEVEMISMAVHRNLLRLRG 94 (326)
T ss_dssp CCEECCTHHHHTTTTSSCSTTEEECCSSSEEEEECCS-SSCCEEEEECCC-----CCCHHHHHHHGGGTCCCTTBCCCCE
T ss_pred ccceecHHHHHHHhhccccceeEecCCCcEEEEEEec-CCCEEEEEEeccccCchHHHHHHHHHHHHHhccCCCccceEE
Confidence 3456788999999999999999999999999999864 689999999965432 23447899999999999999999999
Q ss_pred eeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee
Q 047768 766 ICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL 845 (1009)
Q Consensus 766 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill 845 (1009)
++... ...++||||+++|+|.+++...... ...+++..+..++.|++.||+|||+++.++|+||||||+||++
T Consensus 95 ~~~~~-----~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~~~~~ivH~Dlkp~Nil~ 167 (326)
T 3uim_A 95 FCMTP-----TERLLVYPYMANGSVASCLRERPES--QPPLDWPKRQRIALGSARGLAYLHDHCDPKIIHRDVKAANILL 167 (326)
T ss_dssp EECCS-----SCCEEEEECCTTCBHHHHHHCCSTT--CCCCCHHHHHHHHHHHHHHHHHHHHSSSSCEECCCCSGGGEEE
T ss_pred EEecC-----CceEEEEEeccCCCHHHHHHhcccc--CCCCCHHHHHHHHHHHHHHHHHHHhCCCCCeEeCCCchhhEEE
Confidence 97643 5678999999999999999876432 2358999999999999999999999877799999999999999
Q ss_pred CCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCccc--
Q 047768 846 DHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESM-- 923 (1009)
Q Consensus 846 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~-- 923 (1009)
+.++.+||+|||+++....... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 168 ~~~~~~kl~Dfg~~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 240 (326)
T 3uim_A 168 DEEFEAVVGDFGLAKLMDYKDT-------HVTTAVRGTIGHIAPEYLSTGKSSEKTDVFGYGVMLLELITGQRAFDLARL 240 (326)
T ss_dssp CTTCCEEECCCSSCEECCSSSS-------CEECCCCSCGGGCCHHHHHHSEECHHHHHHHHHHHHHHHHHCCCSBCHHHH
T ss_pred CCCCCEEeccCccccccCcccc-------cccccccCCcCccCHHHhccCCCCccccchhHHHHHHHHHhCCCccccccc
Confidence 9999999999999987653321 2223456999999999999999999999999999999999999999632
Q ss_pred -ccCCccHHHHHHHhccch-hhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 047768 924 -FNEGLTLHEFAKRALPEK-VMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCH 999 (1009)
Q Consensus 924 -~~~~~~~~~~~~~~~~~~-~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~ 999 (1009)
.........+........ ...+.+..+.. ....++...+.+++.+|++.||++|||+.||++.|++
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~ 308 (326)
T 3uim_A 241 ANDDDVMLLDWVKGLLKEKKLEALVDVDLQG----------NYKDEEVEQLIQVALLCTQSSPMERPKMSEVVRMLEG 308 (326)
T ss_dssp TTTSCSBHHHHHTTTTSSCCSTTSSCTTCTT----------SCCHHHHHHHHHHHHHHTCSCGGGSCCHHHHHHHHHT
T ss_pred ccccchhHHHHHHHHhhchhhhhhcChhhcc----------ccCHHHHHHHHHHHHHHhCcCCccCCCHHHHHHHhcC
Confidence 122334444443333222 33333332222 2334677889999999999999999999999999974
No 50
>2qkw_B Protein kinase; three-helix bundle motif, AVRPTO-PTO duplex, layered beta- sheets, transferas; HET: SEP TPO; 3.20A {Solanum pimpinellifolium} PDB: 3hgk_A*
Probab=100.00 E-value=4.6e-41 Score=373.62 Aligned_cols=282 Identities=36% Similarity=0.546 Sum_probs=226.1
Q ss_pred HHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 695 ELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 695 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
++...+++|.+.+.||+|+||.||+|+++ +++.||||++........+.+.+|++++++++||||+++++++..
T Consensus 33 ~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 106 (321)
T 2qkw_B 33 DLEEATNNFDHKFLIGHGVFGKVYKGVLR-DGAKVALKRRTPESSQGIEEFETEIETLSFCRHPHLVSLIGFCDE----- 106 (321)
T ss_dssp CCCCCCCCCSCCCCSCBCSSSEEEEEECT-TCCEEEEEECCSCCSSHHHHHHHHHHGGGSCCCTTBCCEEEECCC-----
T ss_pred HHHHHHhccCccceeecCCCeeEEEEEEC-CCCEEEEEEecccChHHHHHHHHHHHHHHhCCCCCEeeEEEEEcC-----
Confidence 34456789999999999999999999975 789999999876655556789999999999999999999999754
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
....++||||+++|+|.+++...... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 107 ~~~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~ 181 (321)
T 2qkw_B 107 RNEMILIYKYMENGNLKRHLYGSDLP--TMSMSWEQRLEICIGAARGLHYLHTR---AIIHRDVKSINILLDENFVPKIT 181 (321)
T ss_dssp TTCCEEEEECCTTCBTGGGSSSSCCC--SCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCSTTEEECTTCCEEEC
T ss_pred CCeEEEEEEcCCCCcHHHHHhccCCC--ccccCHHHHHHHHHHHHHHHHHhcCC---CeecCCCCHHHEEECCCCCEEEe
Confidence 36789999999999999999765421 23489999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccC-CccHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNE-GLTLHEF 933 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~-~~~~~~~ 933 (1009)
|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++|+.||...... ......+
T Consensus 182 Dfg~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~p~~~~~~~~~~~~~~~ 255 (321)
T 2qkw_B 182 DFGISKKGTELDQ------THLSTVVKGTLGYIDPEYFIKGRLTEKSDVYSFGVVLFEVLCARSAIVQSLPREMVNLAEW 255 (321)
T ss_dssp CCTTCEECSSSSC------CCCBCCCEEETTTCCHHHHHHCBCCTHHHHHHHHHHHHHHHHCCTTCSCSSSSSCCCHHHH
T ss_pred ecccccccccccc------cccccccCCCccccCHHHhcCCCCCcccchHhHHHHHHHHHhCCCcccccCcHHHHHHHHH
Confidence 9999986543211 11223456899999999999999999999999999999999999999754432 2233333
Q ss_pred HHHh-ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 934 AKRA-LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 934 ~~~~-~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
.... ....+...+++.+.. ....+++.++.+++.+||+.||++|||+.|+++.|+.+.+.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~l~~ 316 (321)
T 2qkw_B 256 AVESHNNGQLEQIVDPNLAD----------KIRPESLRKFGDTAVKCLALSSEDRPSMGDVLWKLEYALRL 316 (321)
T ss_dssp THHHHTTTCCCSSSSSSCTT----------CSCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHS
T ss_pred hhhccccccHHHhcChhhcc----------ccCHHHHHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHhhc
Confidence 2211 122233333333221 22346778899999999999999999999999999988763
No 51
>3s95_A LIMK-1, LIM domain kinase 1; structural genomics, structural genomics consortium, SGC, PR kinase, transferase-antibiotic complex; HET: STU GOL; 1.65A {Homo sapiens}
Probab=100.00 E-value=5.5e-41 Score=371.07 Aligned_cols=268 Identities=24% Similarity=0.378 Sum_probs=215.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|.+..+++.||+|++........+.+.+|++++++++||||+++++++... ...+
T Consensus 9 ~~~~~~~~~lG~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~~ 83 (310)
T 3s95_A 9 PSDLIHGEVLGKGCFGQAIKVTHRETGEVMVMKELIRFDEETQRTFLKEVKVMRCLEHPNVLKFIGVLYKD-----KRLN 83 (310)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEETTTCCEEEEEEESCCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-----TEEE
T ss_pred hhHeeccceecCCCCEEEEEEEECCCCcEEEEEEeccCCHHHHHHHHHHHHHHHhCCCcCcccEEEEEecC-----CeeE
Confidence 46788999999999999999999999999999998655445567899999999999999999999997653 6789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++|+|.++++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 84 lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~~ 155 (310)
T 3s95_A 84 FITEYIKGGTLRGIIKSMDS-----QYPWSQRVSFAKDIASGMAYLHSM---NIIHRDLNSHNCLVRENKNVVVADFGLA 155 (310)
T ss_dssp EEEECCTTCBHHHHHHHCCT-----TSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSTTSEEECTTSCEEECCCTTC
T ss_pred EEEEecCCCcHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCcCeEEECCCCCEEEeecccc
Confidence 99999999999999987544 389999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCcc------ccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCC----cc
Q 047768 860 KFLSASPLGNVV------ETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEG----LT 929 (1009)
Q Consensus 860 ~~~~~~~~~~~~------~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~----~~ 929 (1009)
+........... ..........||+.|+|||++.+..++.++||||||+++|||++|..||....... ..
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~~~~~~~~~~~~~~~~ 235 (310)
T 3s95_A 156 RLMVDEKTQPEGLRSLKKPDRKKRYTVVGNPYWMAPEMINGRSYDEKVDVFSFGIVLCEIIGRVNADPDYLPRTMDFGLN 235 (310)
T ss_dssp EECC--------------------CCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHTCCSSTTTSCBCTTSSBC
T ss_pred eecccccccccccccccccccccccccCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHhcCCCCCcchhhhHHHHhhh
Confidence 876543221100 00111224679999999999999999999999999999999999999986533221 11
Q ss_pred HHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 930 LHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 930 ~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
........ ....++.++.+++.+||+.||++|||+.|+++.|+++++....
T Consensus 236 ~~~~~~~~--------------------------~~~~~~~~l~~li~~~l~~dP~~Rps~~~l~~~L~~l~~~~~~ 286 (310)
T 3s95_A 236 VRGFLDRY--------------------------CPPNCPPSFFPITVRCCDLDPEKRPSFVKLEHWLETLRMHLAG 286 (310)
T ss_dssp HHHHHHHT--------------------------CCTTCCTTHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHH
T ss_pred hhcccccc--------------------------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhccC
Confidence 11111110 0112234578999999999999999999999999999877543
No 52
>3fxz_A Serine/threonine-protein kinase PAK 1; transferase, ATP-binding, phosphorylation, allosteric enzyme, alternative splicing, apoptosis, cell junction; HET: TPO FLL; 1.64A {Homo sapiens} SCOP: d.144.1.7 PDB: 3fy0_A* 4daw_A* 3q52_A* 3q53_A* 1yhw_A 1f3m_C 1yhv_A 2hy8_1* 3q4z_A*
Probab=100.00 E-value=1.3e-40 Score=365.05 Aligned_cols=251 Identities=22% Similarity=0.297 Sum_probs=207.7
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|.+..+++.||||++........+.+.+|+.++++++||||+++++++... ...+
T Consensus 19 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~-----~~~~ 93 (297)
T 3fxz_A 19 KKKYTRFEKIGQGASGTVYTAMDVATGQEVAIRQMNLQQQPKKELIINEILVMRENKNPNIVNYLDSYLVG-----DELW 93 (297)
T ss_dssp GGTBCCCEEEEEETTEEEEEEEBTTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TEEE
T ss_pred hhceeeeeeeccCCCeEEEEEEECCCCcEEEEEEeecccccHHHHHHHHHHHHhcCCCCCCCeEeEEEEEC-----CEEE
Confidence 46899999999999999999999889999999999877666677899999999999999999999987653 6789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++|+|.+++.... +++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 94 lv~e~~~~~~L~~~~~~~~-------~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Dfg~~ 163 (297)
T 3fxz_A 94 VVMEYLAGGSLTDVVTETC-------MDEGQIAAVCRECLQALEFLHSN---QVIHRDIKSDNILLGMDGSVKLTDFGFC 163 (297)
T ss_dssp EEEECCTTCBHHHHHHHSC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTTC
T ss_pred EEEECCCCCCHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEECCCCCEEEeeCCCc
Confidence 9999999999999998653 88999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhcc
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALP 939 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~ 939 (1009)
+...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... .........
T Consensus 164 ~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~~~~~~-- 232 (297)
T 3fxz_A 164 AQITPEQ--------SKRSTMVGTPYWMAPEVVTRKAYGPKVDIWSLGIMAIEMIEGEPPYLNENPLR-ALYLIATNG-- 232 (297)
T ss_dssp EECCSTT--------CCBCCCCSCGGGCCHHHHHCSCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHHH-HHHHHHHHC--
T ss_pred eecCCcc--------cccCCccCCcCccChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHhCC--
Confidence 8765432 12234679999999999999999999999999999999999999996432110 000100000
Q ss_pred chhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 940 EKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 940 ~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.+... ........+.+++.+|++.||++|||++|+++
T Consensus 233 -------~~~~~------------~~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 269 (297)
T 3fxz_A 233 -------TPELQ------------NPEKLSAIFRDFLNRCLEMDVEKRGSAKELLQ 269 (297)
T ss_dssp -------SCCCS------------CGGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -------CCCCC------------CccccCHHHHHHHHHHccCChhHCcCHHHHhh
Confidence 00000 01122345789999999999999999999976
No 53
>3soc_A Activin receptor type-2A; structural genomics consortium, SGC, transferase, protein KI; HET: GVD; 1.95A {Homo sapiens} PDB: 3q4t_A* 4asx_A* 2qlu_A*
Probab=100.00 E-value=9.9e-41 Score=370.77 Aligned_cols=282 Identities=24% Similarity=0.328 Sum_probs=213.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|++.+.||+|+||+||+|++. ++.||||+++.... ......+|+.++++++||||+++++++.... ......+
T Consensus 23 ~~~y~~~~~lg~G~~g~Vy~~~~~--~~~vavK~~~~~~~-~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~-~~~~~~~ 98 (322)
T 3soc_A 23 SMPLQLLEVKARGRFGCVWKAQLL--NEYVAVKIFPIQDK-QSWQNEYEVYSLPGMKHENILQFIGAEKRGT-SVDVDLW 98 (322)
T ss_dssp TEEEEEEEEEECSTTCEEEEEEET--TEEEEEEEECGGGH-HHHHHHHHHHTSTTCCCTTBCCEEEEEEEEC-SSSEEEE
T ss_pred hhhchhhheecccCceEEEEEEEC--CCEEEEEEeecCch-HHHHHHHHHHHHhcCCCCCchhhcceeccCC-CCCceEE
Confidence 468999999999999999999875 89999999964432 2345667899999999999999999987642 2234579
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcC-------CCCceecCCCCCceeeCCCCceE
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHC-------QPPIVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~-------~~~ivHrdlk~~Nill~~~~~~k 852 (1009)
+||||+++|+|.++++... +++.+++.++.|++.||+|||+.+ .++|+||||||+||+++.++.+|
T Consensus 99 lv~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~qi~~al~~LH~~~~~l~~~~~~~ivH~Dlkp~Nill~~~~~~k 171 (322)
T 3soc_A 99 LITAFHEKGSLSDFLKANV-------VSWNELCHIAETMARGLAYLHEDIPGLKDGHKPAISHRDIKSKNVLLKNNLTAC 171 (322)
T ss_dssp EEEECCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHTCCEEEETTEEECEEECSCCSGGGEEECTTCCEE
T ss_pred EEEecCCCCCHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHhhccccccccCCCEEeCCCChHhEEECCCCeEE
Confidence 9999999999999997643 899999999999999999999861 34899999999999999999999
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccCC-----CCCCCcccchHHHHHHHHHHhCCCCCcccccCC
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-----GEASMRGGVYSYGILLLEIFTRRRPTESMFNEG 927 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~ 927 (1009)
|+|||+++....... ........||+.|+|||++.+ ..++.++|||||||++|||+||+.||.......
T Consensus 172 L~DFg~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~ 245 (322)
T 3soc_A 172 IADFGLALKFEAGKS------AGDTHGQVGTRRYMAPEVLEGAINFQRDAFLRIDMYAMGLVLWELASRCTAADGPVDEY 245 (322)
T ss_dssp ECCCTTCEEECTTSC------CCCCTTCCCCGGGCCHHHHTTCCCCCHHHHHHHHHHHHHHHHHHHHTTBTTSSSCCCCC
T ss_pred EccCCcccccccccC------ccccccCccCccccCHhhcccccccCcCCCccchhHHHHHHHHHHHhCCCCCCCCcchh
Confidence 999999987654321 122234679999999999887 356778999999999999999999997543322
Q ss_pred cc-HHHHHHHh-ccchhhhc-cCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 928 LT-LHEFAKRA-LPEKVMEI-VDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 928 ~~-~~~~~~~~-~~~~~~~~-~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
.. ........ ....+.+. ......+... .......++.++.+++.+||+.||++|||+.||++.|+++.+.
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~ell~~L~~l~~~ 319 (322)
T 3soc_A 246 MLPFEEEIGQHPSLEDMQEVVVHKKKRPVLR-----DYWQKHAGMAMLCETIEECWDHDAEARLSAGCVGERITQMQRL 319 (322)
T ss_dssp CCTTHHHHCSSCCHHHHHHHHTTSCCCCCCC-----GGGGSSHHHHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred ccchhhhhccCCchhhhhhhhhcccCCCCcc-----ccccccchHHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 11 11110000 00111111 1111111110 1122345667899999999999999999999999999999875
No 54
>3q4u_A Activin receptor type-1; structural genomics consortium, SGC, protein kinase, transfe; HET: LDN FLC; 1.82A {Homo sapiens} PDB: 3mtf_A* 3oom_A* 4dym_A* 3h9r_A* 3my0_A*
Probab=100.00 E-value=3.5e-40 Score=363.14 Aligned_cols=268 Identities=24% Similarity=0.380 Sum_probs=209.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHh--cCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRS--IRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|++ +++.||||++... ..+.+.+|.+++.. ++||||+++++++... ......
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~niv~~~~~~~~~-~~~~~~ 80 (301)
T 3q4u_A 7 ARDITLLECVGKGRYGEVWRGSW--QGENVAVKIFSSR---DEKSWFRETELYNTVMLRHENILGFIASDMTS-RHSSTQ 80 (301)
T ss_dssp GGGCEEEEEEEECSSEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHTCCCCTTBCCEEEEEEEE-ETTEEE
T ss_pred cCcEEEEEeeccCCCcEEEEEEE--CCEEEEEEEeccc---cchhhHHHHHHHHHhhccCcCeeeEEEeeccc-cCCCce
Confidence 46899999999999999999987 5899999998643 34566677777776 7999999999987653 334467
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHh--------hcCCCCceecCCCCCceeeCCCC
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLH--------HHCQPPIVHGDLKPSNVLLDHDM 849 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH--------~~~~~~ivHrdlk~~Nill~~~~ 849 (1009)
.++||||+++|+|.++++... +++..++.++.|++.||+||| +. +|+||||||+||+++.++
T Consensus 81 ~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nill~~~~ 150 (301)
T 3q4u_A 81 LWLITHYHEMGSLYDYLQLTT-------LDTVSCLRIVLSIASGLAHLHIEIFGTQGKP---AIAHRDLKSKNILVKKNG 150 (301)
T ss_dssp EEEEECCCTTCBHHHHHTTCC-------BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBC---EEECSCCCGGGEEECTTS
T ss_pred eEEehhhccCCCHHHHHhhcc-------cCHHHHHHHHHHHHHHHHHHHHhhhhccCCC---CeecCCCChHhEEEcCCC
Confidence 899999999999999996542 899999999999999999999 77 999999999999999999
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC------CCCCcccchHHHHHHHHHHhC-------
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG------EASMRGGVYSYGILLLEIFTR------- 916 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwS~Gvvl~elltg------- 916 (1009)
.+||+|||+++........ .........||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 151 ~~kl~Dfg~a~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DvwslG~il~el~tg~~~~~~~ 226 (301)
T 3q4u_A 151 QCCIADLGLAVMHSQSTNQ----LDVGNNPRVGTKRYMAPEVLDETIQVDCFDSYKRVDIWAFGLVLWEVARRMVSNGIV 226 (301)
T ss_dssp CEEECCCTTCEEEETTTTE----EECCCCCCCCCGGGCCHHHHTTCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCBTTBC
T ss_pred CEEEeeCCCeeeccccccc----ccccccccccccceeChhhhcCcCCCCcccCCchhhHHHHHHHHHHHHhhhcCcccc
Confidence 9999999999876543211 01112335799999999998877 556799999999999999999
Q ss_pred ---CCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 047768 917 ---RRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDV 993 (1009)
Q Consensus 917 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~ev 993 (1009)
+.||...................... .+.. + .......+..++.+++.+||+.||++|||+.||
T Consensus 227 ~~~~~pf~~~~~~~~~~~~~~~~~~~~~~----~~~~---~------~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i 293 (301)
T 3q4u_A 227 EDYKPPFYDVVPNDPSFEDMRKVVCVDQQ----RPNI---P------NRWFSDPTLTSLAKLMKECWYQNPSARLTALRI 293 (301)
T ss_dssp CCCCCTTTTTSCSSCCHHHHHHHHTTSCC----CCCC---C------GGGGGSHHHHHHHHHHHHHCCSSGGGSCCHHHH
T ss_pred ccccccccccCCCCcchhhhhHHHhccCC----CCCC---C------hhhccCccHHHHHHHHHHHhhcChhhCCCHHHH
Confidence 78887655444444433322111110 0000 0 111233567789999999999999999999999
Q ss_pred HHHHHHH
Q 047768 994 VVKLCHA 1000 (1009)
Q Consensus 994 l~~L~~i 1000 (1009)
++.|+++
T Consensus 294 ~~~L~~i 300 (301)
T 3q4u_A 294 KKTLTKI 300 (301)
T ss_dssp HHHHHHH
T ss_pred HHHHhcc
Confidence 9999876
No 55
>3kul_A Ephrin type-A receptor 8; ATP-binding, kinase, nucleotide-binding, transfera phosphorylation, transmembrane, tyrosine-protein kinase; HET: PTR; 2.15A {Homo sapiens}
Probab=100.00 E-value=1.3e-40 Score=369.94 Aligned_cols=266 Identities=26% Similarity=0.396 Sum_probs=209.8
Q ss_pred hccCccCCcccccCCceEEEEEEecC---CeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHEN---GMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||+||+|++..+ +..||||+++.... ...+.+.+|++++++++||||+++++++...
T Consensus 48 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~----- 122 (325)
T 3kul_A 48 ASRIHIEKIIGSGDSGEVCYGRLRVPGQRDVPVAIKALKAGYTERQRRDFLSEASIMGQFDHPNIIRLEGVVTRG----- 122 (325)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECCTTSCCEEEEEEEECTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECGG-----
T ss_pred hhHeEEeeEEEeCCCcEEEEEEEecCCCCCceEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-----
Confidence 35788899999999999999999744 45699999975422 2346789999999999999999999997543
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.++++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 123 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~D 194 (325)
T 3kul_A 123 RLAMIVTEYMENGSLDTFLRTHDG-----QFTIMQLVGMLRGVGAGMRYLSDL---GYVHRDLAARNVLVDSNLVCKVSD 194 (325)
T ss_dssp GCCEEEEECCTTCBHHHHHHTTTT-----CSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred CccEEEeeCCCCCcHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEECCCCCEEECC
Confidence 678999999999999999976543 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~ 934 (1009)
||+++........ ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ...
T Consensus 195 fg~a~~~~~~~~~-----~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~-----~~~ 264 (325)
T 3kul_A 195 FGLSRVLEDDPDA-----AYTTTGGKIPIRWTAPEAIAFRTFSSASDVWSFGVVMWEVLAYGERPYWNMTNR-----DVI 264 (325)
T ss_dssp CSSCEECC----C-----CEECC---CCGGGSCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTSCHH-----HHH
T ss_pred CCcccccccCccc-----eeeccCCCCcccccCHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCCcccCCHH-----HHH
Confidence 9999877543211 112223456889999999999999999999999999999999 99999753221 111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhcC
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLGQ 1007 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~~ 1007 (1009)
... ....... ....+..++.+++.+||+.||++|||+.|+++.|+.+.+.....
T Consensus 265 ~~~--------~~~~~~~-----------~~~~~~~~l~~li~~~l~~dp~~Rps~~eil~~L~~l~~~~~~~ 318 (325)
T 3kul_A 265 SSV--------EEGYRLP-----------APMGCPHALHQLMLDCWHKDRAQRPRFSQIVSVLDALIRSPESL 318 (325)
T ss_dssp HHH--------HTTCCCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSCC--
T ss_pred HHH--------HcCCCCC-----------CCCCcCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhCcccc
Confidence 111 0000000 01123456889999999999999999999999999998876544
No 56
>3ugc_A Tyrosine-protein kinase JAK2; small molecule inhibitor, ATP binding, transferase-transfera inhibitor complex; HET: 046; 1.34A {} PDB: 3krr_A* 3lpb_A* 4aqc_A* 4e4m_A* 4f08_A* 4f09_A* 3q32_A* 3rvg_A* 4hge_A* 3tjc_A* 3tjd_A* 4bbe_A* 4bbf_A* 2b7a_A* 3fup_A* 3e64_A* 3e62_A* 3e63_A* 2xa4_A* 3iok_A* ...
Probab=100.00 E-value=1.4e-40 Score=365.18 Aligned_cols=274 Identities=25% Similarity=0.397 Sum_probs=210.2
Q ss_pred hccCccCCcccccCCceEEEEEE----ecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVL----HENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|++.+.||+|+||+||+|++ ..+++.||||+++.......+.+.+|++++++++||||+++++++... +.
T Consensus 9 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 85 (295)
T 3ugc_A 9 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---GR 85 (295)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTCSSCCEEEEEEEESCCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECHH---HH
T ss_pred HHHhhhhheeeccCCEEEEEEEEecccCCCCcEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEecC---CC
Confidence 46899999999999999999994 457899999999755544557899999999999999999999987542 22
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 86 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~D 157 (295)
T 3ugc_A 86 RNLKLIMEYLPYGSLRDYLQKHKE-----RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGD 157 (295)
T ss_dssp TSCEEEEECCTTCBHHHHHHHCGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC
T ss_pred CceEEEEEeCCCCCHHHHHHhccc-----ccCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHhhEEEcCCCeEEEcc
Confidence 457899999999999999987653 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+++........ ........+|..|+|||++.+..++.++||||||+++|||++|..|+...... +..
T Consensus 158 fg~~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~~~~~~~~~------~~~ 226 (295)
T 3ugc_A 158 FGLTKVLPQDKEF-----FKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPAE------FMR 226 (295)
T ss_dssp CCSCC------------------CTTCGGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTTCTTCSHHHH------HHH
T ss_pred CcccccccCCcce-----eeeccCCCCccceeCcHHhcCCCCChHHHHHHHHHHHHHHHhcccccCCChHH------HHh
Confidence 9999876543211 11222345788899999999999999999999999999999999998643211 110
Q ss_pred Hhccc--------hhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 936 RALPE--------KVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 936 ~~~~~--------~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
..... ...+.+.... ....+..++.++.+++.+||+.||++|||+.|+++.|+++++++.
T Consensus 227 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~el~~~L~~l~~~l~ 294 (295)
T 3ugc_A 227 MIGNDKQGQMIVFHLIELLKNNG----------RLPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDNMA 294 (295)
T ss_dssp HHCTTCCTHHHHHHHHHHHHTTC----------CCCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHC--
T ss_pred hhcCccccchhHHHHHHHHhccC----------cCCCCcCcCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhcc
Confidence 00000 0001110000 001122345678899999999999999999999999999998764
No 57
>3cbl_A C-FES, proto-oncogene tyrosine-protein kinase FES/FPS; V-FES, fujinami, avian sarcoma, viral, feline virus, SGC; HET: STU; 1.75A {Homo sapiens} PDB: 3bkb_A* 3cd3_A* 4e93_A*
Probab=100.00 E-value=6.4e-41 Score=380.48 Aligned_cols=263 Identities=27% Similarity=0.414 Sum_probs=211.2
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
..++|.+.+.||+|+||+||+|+++.+++.||||+++.... ...+.+.+|++++++++||||+++++++... ..
T Consensus 112 ~~~~~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-----~~ 186 (377)
T 3cbl_A 112 NHEDLVLGEQIGRGNFGEVFSGRLRADNTLVAVKSCRETLPPDLKAKFLQEARILKQYSHPNIVRLIGVCTQK-----QP 186 (377)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEECCTTSCHHHHTTTTHHHHHHTTCCCTTBCCEEEEECSS-----SS
T ss_pred chHHeEEeeEeccCCCCeEEEEEEecCCeEEEEEEccccCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEecC-----CC
Confidence 34678899999999999999999988899999999864422 1234688999999999999999999997543 56
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+++|+|.++++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 187 ~~lv~e~~~~g~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nil~~~~~~~kl~DfG 258 (377)
T 3cbl_A 187 IYIVMELVQGGDFLTFLRTEGA-----RLRVKTLLQMVGDAAAGMEYLESK---CCIHRDLAARNCLVTEKNVLKISDFG 258 (377)
T ss_dssp CEEEEECCTTCBHHHHHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCGG
T ss_pred cEEEEEcCCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcCCcccCHHHEEEcCCCcEEECcCC
Confidence 7999999999999999987543 389999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~ 936 (1009)
+++....... ........+++.|+|||++.++.++.++|||||||++|||+| |+.||...... ........
T Consensus 259 ~s~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~il~el~t~g~~p~~~~~~~--~~~~~~~~ 330 (377)
T 3cbl_A 259 MSREEADGVY------AASGGLRQVPVKWTAPEALNYGRYSSESDVWSFGILLWETFSLGASPYPNLSNQ--QTREFVEK 330 (377)
T ss_dssp GCEECTTSEE------ECCSSCCEEEGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCSSTTSCHH--HHHHHHHT
T ss_pred CceecCCCce------eecCCCCCCCcCcCCHhHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc
Confidence 9986543211 011112346788999999999999999999999999999999 99999754321 11111110
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
. ...+ .+..++.++.+++.+||+.||++|||++|+++.|+++++.+
T Consensus 331 ~-----------~~~~-----------~~~~~~~~l~~li~~cl~~dP~~Rps~~~i~~~L~~i~~~~ 376 (377)
T 3cbl_A 331 G-----------GRLP-----------CPELCPDAVFRLMEQCWAYEPGQRPSFSTIYQELQSIRKRH 376 (377)
T ss_dssp T-----------CCCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred C-----------CCCC-----------CCCCCCHHHHHHHHHHcCCCchhCcCHHHHHHHHHHHHhhc
Confidence 0 0000 01123456889999999999999999999999999998764
No 58
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=8.9e-40 Score=379.21 Aligned_cols=363 Identities=18% Similarity=0.174 Sum_probs=224.0
Q ss_pred ccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHH
Q 047768 83 GGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEEL 162 (1009)
Q Consensus 83 ~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~ 162 (1009)
.+..+.+++++++|++|+|++|.+++ +| .|+.+++|++|+|++|++++. | ++++++|++|++++|++++. | +
T Consensus 31 ~~~~~~~~~~l~~L~~L~Ls~n~l~~-~~-~l~~l~~L~~L~Ls~n~l~~~-~--~~~l~~L~~L~Ls~N~l~~~-~--~ 102 (457)
T 3bz5_A 31 QATDTISEEQLATLTSLDCHNSSITD-MT-GIEKLTGLTKLICTSNNITTL-D--LSQNTNLTYLACDSNKLTNL-D--V 102 (457)
T ss_dssp CTTSEEEHHHHTTCCEEECCSSCCCC-CT-TGGGCTTCSEEECCSSCCSCC-C--CTTCTTCSEEECCSSCCSCC-C--C
T ss_pred CcccccChhHcCCCCEEEccCCCccc-Ch-hhcccCCCCEEEccCCcCCeE-c--cccCCCCCEEECcCCCCcee-e--c
Confidence 34445567778888888888888885 45 588888888888888888763 3 77777777777777766642 2 1
Q ss_pred hhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChH
Q 047768 163 ISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSL 242 (1009)
Q Consensus 163 ~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 242 (1009)
..+++|++|++++|++++ +| ++++++|++|++++|++++. .++.+++|++|++++|+..
T Consensus 103 --~~l~~L~~L~L~~N~l~~-l~--~~~l~~L~~L~l~~N~l~~l---~l~~l~~L~~L~l~~n~~~------------- 161 (457)
T 3bz5_A 103 --TPLTKLTYLNCDTNKLTK-LD--VSQNPLLTYLNCARNTLTEI---DVSHNTQLTELDCHLNKKI------------- 161 (457)
T ss_dssp --TTCTTCCEEECCSSCCSC-CC--CTTCTTCCEEECTTSCCSCC---CCTTCTTCCEEECTTCSCC-------------
T ss_pred --CCCCcCCEEECCCCcCCe-ec--CCCCCcCCEEECCCCcccee---ccccCCcCCEEECCCCCcc-------------
Confidence 345556666666666554 22 55555666666666655542 1455555555555555333
Q ss_pred HHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccc
Q 047768 243 VEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLAT 322 (1009)
Q Consensus 243 ~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~ 322 (1009)
+.++ +..+++|++|++++|++++. | +..+++|++|++++|++++. .|
T Consensus 162 -----------~~~~---~~~l~~L~~L~ls~n~l~~l-~--l~~l~~L~~L~l~~N~l~~~---~l------------- 208 (457)
T 3bz5_A 162 -----------TKLD---VTPQTQLTTLDCSFNKITEL-D--VSQNKLLNRLNCDTNNITKL---DL------------- 208 (457)
T ss_dssp -----------CCCC---CTTCTTCCEEECCSSCCCCC-C--CTTCTTCCEEECCSSCCSCC---CC-------------
T ss_pred -----------cccc---cccCCcCCEEECCCCcccee-c--cccCCCCCEEECcCCcCCee---cc-------------
Confidence 2332 23456666666666666653 3 66666777777777766643 12
Q ss_pred cccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCC
Q 047768 323 NFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEAN 402 (1009)
Q Consensus 323 N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 402 (1009)
..+++|++|++++|++++ +| +..+ ..|+.|++++|++++.. +..+++|+.|++++|
T Consensus 209 -----------------~~l~~L~~L~Ls~N~l~~-ip--~~~l-~~L~~L~l~~N~l~~~~---~~~l~~L~~L~l~~n 264 (457)
T 3bz5_A 209 -----------------NQNIQLTFLDCSSNKLTE-ID--VTPL-TQLTYFDCSVNPLTELD---VSTLSKLTTLHCIQT 264 (457)
T ss_dssp -----------------TTCTTCSEEECCSSCCSC-CC--CTTC-TTCSEEECCSSCCSCCC---CTTCTTCCEEECTTC
T ss_pred -----------------ccCCCCCEEECcCCcccc-cC--cccc-CCCCEEEeeCCcCCCcC---HHHCCCCCEEeccCC
Confidence 223444444554444443 22 2222 23344444444444322 234455566665554
Q ss_pred CCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCch
Q 047768 403 RLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQ 482 (1009)
Q Consensus 403 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~ 482 (1009)
+|+.|++++|.+.+.+| ++.+++|++|++++|.+.+.+|... .+|+
T Consensus 265 --------------~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~---~~L~--------------- 310 (457)
T 3bz5_A 265 --------------DLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQA---AGIT--------------- 310 (457)
T ss_dssp --------------CCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTT---CCCS---------------
T ss_pred --------------CCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCC---Ccce---------------
Confidence 24456666666655554 3455666666666666555555321 1211
Q ss_pred hhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccc
Q 047768 483 QILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTS 562 (1009)
Q Consensus 483 ~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 562 (1009)
.|++++ +++|++|++++|+|++. + ++.+++|+.|++++|+|++ ++.
T Consensus 311 ----------~L~l~~-------------~~~L~~L~L~~N~l~~l-~--l~~l~~L~~L~l~~N~l~~--------l~~ 356 (457)
T 3bz5_A 311 ----------ELDLSQ-------------NPKLVYLYLNNTELTEL-D--VSHNTKLKSLSCVNAHIQD--------FSS 356 (457)
T ss_dssp ----------CCCCTT-------------CTTCCEEECTTCCCSCC-C--CTTCTTCSEEECCSSCCCB--------CTT
T ss_pred ----------Eechhh-------------cccCCEEECCCCccccc-c--cccCCcCcEEECCCCCCCC--------ccc
Confidence 133333 36889999999999974 3 8889999999999999985 356
Q ss_pred cceEcCCCcccccccccccccccccCceecccccCcccCCCC
Q 047768 563 IKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 563 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~ 604 (1009)
|..|++++|.++|. ..+..|+.+++++|+++|.+|..
T Consensus 357 L~~L~l~~n~l~g~-----~~~~~l~~l~l~~N~l~g~ip~~ 393 (457)
T 3bz5_A 357 VGKIPALNNNFEAE-----GQTITMPKETLTNNSLTIAVSPD 393 (457)
T ss_dssp GGGSSGGGTSEEEE-----EEEEECCCBCCBTTBEEEECCTT
T ss_pred cccccccCCcEEec-----ceeeecCccccccCcEEEEcChh
Confidence 77888999999986 35677888999999999999964
No 59
>2psq_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xr0_A
Probab=100.00 E-value=6.2e-40 Score=370.96 Aligned_cols=268 Identities=22% Similarity=0.371 Sum_probs=212.4
Q ss_pred hccCccCCcccccCCceEEEEEEe-------cCCeEEEEEEeecccc-cchHHHHHHHHHHHhc-CCCCcceEEeeeecc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLH-------ENGMLVAVKVINLEQK-GGSKSFAAECEALRSI-RHRNLIKIVTICSSI 770 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~-------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 770 (1009)
.++|.+.+.||+|+||.||+|++. .++..||||+++.... ...+.+.+|+++++++ +||||+++++++..
T Consensus 80 ~~~~~~~~~LG~G~fg~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~- 158 (370)
T 2psq_A 80 RDKLTLGKPLGEGCFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ- 158 (370)
T ss_dssp GGGEEEEEEESCCSSSEEEEEEEETCSTTCTTCEEEEEEEECCTTCBHHHHHHHHHHHHHHHHSCCCTTBCCEEEEECS-
T ss_pred HHHCEeeeEEeeCCCeeEEEEEEecccCcCcCcceeEEEEEecCCcCHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEcc-
Confidence 468899999999999999999975 2456899999965432 2345789999999999 89999999999754
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCC----------CCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCC
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQ----------LGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKP 840 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~ 840 (1009)
....++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||++ +|+||||||
T Consensus 159 ----~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp 231 (370)
T 2psq_A 159 ----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLAA 231 (370)
T ss_dssp ----SSSCEEEEECCTTCBHHHHHHHTCCC-----------CCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCG
T ss_pred ----CCCEEEEEEcCCCCCHHHHHHhhCCccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ceeccccch
Confidence 36689999999999999999875421 0112489999999999999999999999 999999999
Q ss_pred CceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCC
Q 047768 841 SNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRP 919 (1009)
Q Consensus 841 ~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p 919 (1009)
+||+++.++.+||+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |+.|
T Consensus 232 ~NIll~~~~~~kl~DFG~a~~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~p 305 (370)
T 2psq_A 232 RNVLVTENNVMKIADFGLARDINNIDYY------KKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGSP 305 (370)
T ss_dssp GGEEECTTCCEEECCCSSCEETTCCCTT------CTTTTTTSCGGGCCHHHHHTCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred hhEEECCCCCEEEccccCCcccCcccce------ecccCCCcccceECHhHhcCCCCCcHHHHHHHHHHHHHHHcCCCCC
Confidence 9999999999999999999876543211 12223457889999999999999999999999999999999 9999
Q ss_pred CcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 047768 920 TESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCH 999 (1009)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~ 999 (1009)
|...... ......... .... .+..+..++.+++.+||+.||++|||+.|+++.|+.
T Consensus 306 ~~~~~~~--~~~~~~~~~-----------~~~~-----------~~~~~~~~l~~li~~~l~~dP~~Rpt~~ell~~L~~ 361 (370)
T 2psq_A 306 YPGIPVE--ELFKLLKEG-----------HRMD-----------KPANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 361 (370)
T ss_dssp STTCCGG--GHHHHHHTT-----------CCCC-----------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCCHH--HHHHHHhcC-----------CCCC-----------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 9754222 111111110 0000 011234568899999999999999999999999999
Q ss_pred HHHhhh
Q 047768 1000 ARQNFL 1005 (1009)
Q Consensus 1000 i~~~~~ 1005 (1009)
+.+...
T Consensus 362 il~~~~ 367 (370)
T 2psq_A 362 ILTLTT 367 (370)
T ss_dssp HHHHHC
T ss_pred HHHHhc
Confidence 887554
No 60
>2c30_A Serine/threonine-protein kinase PAK 6; CRIB domain, ATP-binding, transferase, nucleotide-binding; HET: SEP; 1.6A {Homo sapiens} PDB: 2f57_A* 2j0i_A* 2cdz_A* 2q0n_A* 2x4z_A* 2bva_A*
Probab=100.00 E-value=1.4e-39 Score=360.99 Aligned_cols=262 Identities=23% Similarity=0.291 Sum_probs=211.9
Q ss_pred CccCHHHHHHHhcc----------CccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCC
Q 047768 689 PMVSYKELSKATNE----------FSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHR 758 (1009)
Q Consensus 689 ~~~~~~~~~~~~~~----------~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 758 (1009)
+.++++++..+++. |...+.||+|+||.||+|+++.+|+.||||+++.......+.+.+|+.++++++||
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ 102 (321)
T 2c30_A 23 GVVTHEQFKAALRMVVDQGDPRLLLDSYVKIGEGSTGIVCLAREKHSGRQVAVKMMDLRKQQRRELLFNEVVIMRDYQHF 102 (321)
T ss_dssp --CCHHHHHHHHHTTSCSSCHHHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCSHHHHHHHHHHHTTCCCT
T ss_pred CcCcHHHHHHHHhhccCCCCchhhhhccEEeccCCCeEEEEEEECCCCcEEEEEEEeccchhHHHHHHHHHHHHHhCCCC
Confidence 55677777766653 66678999999999999999889999999999876666667899999999999999
Q ss_pred CcceEEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCC
Q 047768 759 NLIKIVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDL 838 (1009)
Q Consensus 759 niv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdl 838 (1009)
||+++++++... ...++||||+++|+|.+++.... +++.++..++.|++.||+|||+. +|+||||
T Consensus 103 niv~~~~~~~~~-----~~~~lv~e~~~~~~L~~~l~~~~-------l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dl 167 (321)
T 2c30_A 103 NVVEMYKSYLVG-----EELWVLMEFLQGGALTDIVSQVR-------LNEEQIATVCEAVLQALAYLHAQ---GVIHRDI 167 (321)
T ss_dssp TBCCEEEEEEET-----TEEEEEECCCCSCBHHHHHTTCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCC
T ss_pred CcceEEEEEEEC-----CEEEEEEecCCCCCHHHHHHhcC-------CCHHHHHHHHHHHHHHHHHHHHC---CeecCCC
Confidence 999999997653 67899999999999999987542 89999999999999999999999 9999999
Q ss_pred CCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCC
Q 047768 839 KPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRR 918 (1009)
Q Consensus 839 k~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~ 918 (1009)
||+||+++.++.+||+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.
T Consensus 168 kp~NIll~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Dv~slG~il~el~~g~~ 239 (321)
T 2c30_A 168 KSDSILLTLDGRVKLSDFGFCAQISKDV--------PKRKSLVGTPYWMAPEVISRSLYATEVDIWSLGIMVIEMVDGEP 239 (321)
T ss_dssp SGGGEEECTTCCEEECCCTTCEECCSSS--------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSC
T ss_pred CHHHEEECCCCcEEEeeeeeeeecccCc--------cccccccCCccccCHhhhcCCCCCchhhHHHHHHHHHHHHhCCC
Confidence 9999999999999999999998765321 12234579999999999999999999999999999999999999
Q ss_pred CCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 919 PTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 919 p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
||..... ...... +.....+.+.. ......++.+++.+|++.||++|||+.|+++
T Consensus 240 pf~~~~~-----~~~~~~-----~~~~~~~~~~~------------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 294 (321)
T 2c30_A 240 PYFSDSP-----VQAMKR-----LRDSPPPKLKN------------SHKVSPVLRDFLERMLVRDPQERATAQELLD 294 (321)
T ss_dssp TTTTSCH-----HHHHHH-----HHHSSCCCCTT------------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred CCCCCCH-----HHHHHH-----HhcCCCCCcCc------------cccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 9964321 111111 11111111110 0122345789999999999999999999986
No 61
>3lb7_A RAF proto-oncogene serine/threonine-protein kinas; kinase domain, alternative splicing, ATP-binding, disease MU kinase, metal-binding; 4.00A {Homo sapiens} PDB: 3omv_A*
Probab=100.00 E-value=7.8e-40 Score=360.62 Aligned_cols=265 Identities=28% Similarity=0.425 Sum_probs=204.7
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|++. ..+|||+++..... ..+.+.+|++++++++||||+++++++.. +.
T Consensus 35 ~~~~~~~~~lG~G~~g~Vy~~~~~---~~~avk~~k~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------~~ 105 (307)
T 3lb7_A 35 ASEVMLSTRIGSGSFGTVYKGKWH---GDVAVKILKVVDPTPEQFQAFRNEVAVLRKTRHVNILLFMGYMTK------DN 105 (307)
T ss_dssp TTSCCEEEEEEECSSCEEEEEESS---SEEEEEECCCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------SS
T ss_pred ccceEEEeEecCCCCeEEEEEEEC---CEEEEEEEecCCCCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc------Cc
Confidence 468889999999999999999864 35899988654322 24678999999999999999999998643 45
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+++++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 106 ~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~DFg 177 (307)
T 3lb7_A 106 LAIVTQWCEGSSLYKHLHVQET-----KFQMFQLIDIARQTAQGMDYLHAK---NIIHRDMKSNNIFLHEGLTVKIGDFG 177 (307)
T ss_dssp CEEEEECCSSCBHHHHHHTSCC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCSSSEEECTTSCEEECCCC
T ss_pred EEEEEecCCCCcHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CEeeCCCChhhEEEcCCCCEEEccCC
Confidence 7899999999999999976543 389999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccC---CCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL---GGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
+++....... ........||+.|+|||++. +..++.++|||||||++|||++|+.||......... ....
T Consensus 178 ~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~-~~~~ 250 (307)
T 3lb7_A 178 LATVKSRWSG------SQQVEQPTGSVLWMAPEVIRMQDNNPFSFQSDVYSYGIVLYELMTGELPYSHINNRDQI-IFMV 250 (307)
T ss_dssp SSCC------------------CCCCTTSCCHHHHHCCSSCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCHHHH-HHHH
T ss_pred Cceecccccc------cccccCCCCCcceECcceeeccCCCCCCchhhHHHHHHHHHHHHhCCCCCccCCcHHHH-HHHH
Confidence 9986543211 11223356899999999886 667899999999999999999999999754322111 1111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
... ...+.+... ...++.++.+++.+||+.||++||++.|+++.|+.+...++.
T Consensus 251 ~~~-------~~~~~~~~~-----------~~~~~~~l~~li~~~l~~~p~~RPs~~~il~~l~~l~~~~pk 304 (307)
T 3lb7_A 251 GRG-------YASPDLSKL-----------YKNCPKAMKRLVADCVKKVKEERPLFPQILSSIELLQHSLPK 304 (307)
T ss_dssp HHT-------CCCCCSTTS-----------CSSSCHHHHHHHHHHSCSSSTTSCCHHHHHHHHHHHHTTCCC
T ss_pred hcC-------CCCcchhhh-----------hcCCcHHHHHHHHHHhhCChhhCcCHHHHHHHHHHHHhhccc
Confidence 110 001111000 012345688999999999999999999999999999887654
No 62
>3fe3_A MAP/microtubule affinity-regulating kinase 3; serine/threonine protein kinase, MARK;PAR-1, UBA domai TAK1;P78;MARK3, ATP-binding; 1.90A {Homo sapiens} PDB: 2qnj_A 1y8g_A* 1zmw_A 1zmu_A 1zmv_A 2wzj_A 2r0i_A 2hak_A 3iec_A
Probab=100.00 E-value=5.9e-40 Score=364.19 Aligned_cols=249 Identities=24% Similarity=0.339 Sum_probs=204.2
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
..++|.+.+.||+|+||.||+|++..+|+.||||++..... ...+.+.+|+++++.++||||+++++++.. ..
T Consensus 13 ~~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~-----~~ 87 (328)
T 3fe3_A 13 HIGNYRLLKTIGKGNFAKVKLARHILTGREVAIKIIDKTQLNPTSLQKLFREVRIMKILNHPNIVKLFEVIET-----EK 87 (328)
T ss_dssp EETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred ccCCEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhhcCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEE-----CC
Confidence 35689999999999999999999988999999999965432 234568899999999999999999999754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++..... +++.++..++.|++.|++|||++ +|+||||||+||+++.++.+||+||
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~~~------l~~~~~~~~~~qi~~al~~lH~~---~ivHrDlkp~NIll~~~~~~kl~DF 158 (328)
T 3fe3_A 88 TLYLIMEYASGGEVFDYLVAHGR------MKEKEARSKFRQIVSAVQYCHQK---RIVHRDLKAENLLLDADMNIKIADF 158 (328)
T ss_dssp EEEEEECCCTTCBHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECST
T ss_pred EEEEEEECCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CEeccCCCHHHEEEcCCCCEEEeec
Confidence 78999999999999999987653 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCC-CcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEAS-MRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~-~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++..... .......||+.|+|||++.+..+. .++||||+||++|||++|+.||.... ......
T Consensus 159 G~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~ 224 (328)
T 3fe3_A 159 GFSNEFTVG---------GKLDAFCGAPPYAAPELFQGKKYDGPEVDVWSLGVILYTLVSGSLPFDGQN-----LKELRE 224 (328)
T ss_dssp TCCGGGSSS---------CGGGTTSSSGGGCCHHHHHTCCCCSHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHH
T ss_pred cCceecCCC---------CccccccCCcceeCcccccCCCcCCchhhhhhhHHHHHHHHhCCCCCCCCC-----HHHHHH
Confidence 999866532 223346799999999999888874 79999999999999999999997432 222221
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
....... ..+ .....++.+++.+|++.||.+|||++|+++
T Consensus 225 ~i~~~~~---------~~p-----------~~~s~~~~~li~~~L~~dP~~R~t~~eil~ 264 (328)
T 3fe3_A 225 RVLRGKY---------RIP-----------FYMSTDCENLLKRFLVLNPIKRGTLEQIMK 264 (328)
T ss_dssp HHHHCCC---------CCC-----------TTSCHHHHHHHHHHCCSSTTTSCCHHHHTT
T ss_pred HHHhCCC---------CCC-----------CCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1111100 000 012235679999999999999999999975
No 63
>2qol_A Ephrin receptor; receptor tyrosine kinase, juxtamembrane segment, structural genomics, mutant, structural genomics consortium, SGC, ATP- binding; 1.07A {Homo sapiens} PDB: 2qok_A 2qoi_A 2qoo_A 2qof_A 2qod_A 2qo9_A* 2gsf_A 2qo7_A* 2qo2_A* 2qoq_A* 2qon_A* 3fxx_A* 3fy2_A 2qoc_A* 2qob_A* 3dzq_A* 2r2p_A 2hel_A 2rei_A 3dko_A* ...
Probab=100.00 E-value=2.6e-40 Score=374.21 Aligned_cols=263 Identities=27% Similarity=0.447 Sum_probs=198.9
Q ss_pred hccCccCCcccccCCceEEEEEEe---cCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLH---ENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||+||+|+++ .++..||||+++.... ...+.+.+|++++++++||||+++++++.. .
T Consensus 44 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~ 118 (373)
T 2qol_A 44 ATNISIDKVVGAGEFGEVCSGRLKLPSKKEISVAIKTLKVGYTEKQRRDFLGEASIMGQFDHPNIIRLEGVVTK-----S 118 (373)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-CBCTTSCBCCEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS-----S
T ss_pred HhhceeeeEEeeCCCeEEEEEEEecCCCCceeEEEEEecCccCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEee-----C
Confidence 358999999999999999999986 4577899999975432 234679999999999999999999999754 3
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.++++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 119 ~~~~lv~e~~~~~sL~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~D 190 (373)
T 2qol_A 119 KPVMIVTEYMENGSLDSFLRKHDA-----QFTVIQLVGMLRGIASGMKYLSDM---GYVHRDLAARNILINSNLVCKVSD 190 (373)
T ss_dssp SSCEEEEECCTTCBHHHHHHTTTT-----CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECC
T ss_pred CceEEEEeCCCCCcHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCcceEEEcCCCCEEECc
Confidence 678999999999999999987643 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~ 934 (1009)
||+++....... .........+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ...
T Consensus 191 fg~a~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~SlG~il~ellt~g~~P~~~~~~~-----~~~ 260 (373)
T 2qol_A 191 FGLGRVLEDDPE-----AAYTTRGGKIPIRWTSPEAIAYRKFTSASDVWSYGIVLWEVMSYGERPYWEMSNQ-----DVI 260 (373)
T ss_dssp C---------------------------CTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTC-CTTTTCCHH-----HHH
T ss_pred CccccccccCCc-----cceeccCCCcCCCccChhhhccCCcCchhcHHHHHHHHHHHHhCCCCCCCCCCHH-----HHH
Confidence 999987654321 0111223346788999999999999999999999999999998 99999754221 111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
... ..... ......++.++.+++.+||+.||++||++.||++.|+++.+..
T Consensus 261 ~~i---------~~~~~----------~~~~~~~~~~l~~li~~cl~~dp~~RPs~~~i~~~L~~~~~~~ 311 (373)
T 2qol_A 261 KAV---------DEGYR----------LPPPMDCPAALYQLMLDCWQKDRNNRPKFEQIVSILDKLIRNP 311 (373)
T ss_dssp HHH---------HTTEE----------CCCCTTCBHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCG
T ss_pred HHH---------HcCCC----------CCCCccccHHHHHHHHHHhCcChhhCcCHHHHHHHHHHHHhCc
Confidence 110 00000 0011133456889999999999999999999999999987754
No 64
>3op5_A Serine/threonine-protein kinase VRK1; adenosine triphosphate, amino acid sequence, binding sites, domain, models, molecular; HET: REB; 2.40A {Homo sapiens} PDB: 2lav_A 2kty_A 2kul_A
Probab=100.00 E-value=7.2e-40 Score=370.50 Aligned_cols=281 Identities=17% Similarity=0.232 Sum_probs=214.6
Q ss_pred HhccCccCCcccccCCceEEEEEEecC-----CeEEEEEEeeccccc-----------chHHHHHHHHHHHhcCCCCcce
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHEN-----GMLVAVKVINLEQKG-----------GSKSFAAECEALRSIRHRNLIK 762 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~-----~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~ 762 (1009)
..++|.+.+.||+|+||+||+|.++.+ ++.||||++...... ....+..|+..++.++||||++
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~~iv~ 112 (364)
T 3op5_A 33 AAAAWKVGLPIGQGGFGCIYLADMNSSESVGSDAPCVVKVEPSDNGPLFTELKFYQRAAKPEQIQKWIRTRKLKYLGVPK 112 (364)
T ss_dssp TCCEEEEEEECCCC-CCEEEEEEECCSSCCCTTCSEEEEEEETTCHHHHHHHHHHHHHCCHHHHHHHHHHTTCSCCCSCC
T ss_pred CCCeEEEEEEEecCCCeEEEEeeecCccccccccceEEEEeeccchhHHHHHHHHHhhhhhHHHHHHHHHhhccCCCCCe
Confidence 345899999999999999999998754 578999998643211 1123344555667778999999
Q ss_pred EEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCc
Q 047768 763 IVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSN 842 (1009)
Q Consensus 763 l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~N 842 (1009)
+++++... ..+....++||||+ +++|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+|
T Consensus 113 ~~~~~~~~-~~~~~~~~lv~e~~-g~~L~~~~~~~~~-----~l~~~~~~~i~~qi~~~l~~lH~~---~iiHrDlkp~N 182 (364)
T 3op5_A 113 YWGSGLHD-KNGKSYRFMIMDRF-GSDLQKIYEANAK-----RFSRKTVLQLSLRILDILEYIHEH---EYVHGDIKASN 182 (364)
T ss_dssp EEEEEEEE-ETTEEEEEEEEECE-EEEHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGG
T ss_pred EEeeeeec-cCCcceEEEEEeCC-CCCHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeEEecCCHHH
Confidence 99998753 23345689999999 9999999987543 399999999999999999999999 99999999999
Q ss_pred eeeC--CCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCC
Q 047768 843 VLLD--HDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPT 920 (1009)
Q Consensus 843 ill~--~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~ 920 (1009)
||++ .++.+||+|||+++.+......... .........||+.|+|||++.+..++.++|||||||++|||+||+.||
T Consensus 183 ill~~~~~~~~kl~DFG~a~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~g~~Pf 261 (364)
T 3op5_A 183 LLLNYKNPDQVYLVDYGLAYRYCPEGVHKAY-AADPKRCHDGTIEFTSIDAHNGVAPSRRGDLEILGYCMIQWLTGHLPW 261 (364)
T ss_dssp EEEESSCTTCEEECCCTTCEESSGGGCCCCS-SCCSSCCCCCCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSCCTT
T ss_pred EEEecCCCCeEEEEECCcceecccCCccccc-ccCcccccCCCCCccCHHHhCCCCCCchhhHHHHHHHHHHHHhCCCCc
Confidence 9999 8899999999999877543221111 111223456999999999999999999999999999999999999999
Q ss_pred cccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Q 047768 921 ESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHA 1000 (1009)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i 1000 (1009)
...... ..............+.++++.++.. ..++.++.+++..||+.||++||++.++++.|+.+
T Consensus 262 ~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~li~~cl~~~p~~RP~~~~l~~~l~~~ 327 (364)
T 3op5_A 262 EDNLKD-PKYVRDSKIRYRENIASLMDKCFPA-------------ANAPGEIAKYMETVKLLDYTEKPLYENLRDILLQG 327 (364)
T ss_dssp GGGTTC-HHHHHHHHHHHHHCHHHHHHHHSCT-------------TCCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHH
T ss_pred cccccC-HHHHHHHHHHhhhhHHHHHHHhccc-------------ccCHHHHHHHHHHHhcCCCCCCCCHHHHHHHHHHH
Confidence 854332 1222222223333344444433321 12245688999999999999999999999999998
Q ss_pred HHhh
Q 047768 1001 RQNF 1004 (1009)
Q Consensus 1001 ~~~~ 1004 (1009)
.++.
T Consensus 328 ~~~~ 331 (364)
T 3op5_A 328 LKAI 331 (364)
T ss_dssp HHHT
T ss_pred HHHc
Confidence 8764
No 65
>2nru_A Interleukin-1 receptor-associated kinase 4; inhibitor, IRAK, transferase; HET: TPO SEP T12; 2.00A {Homo sapiens} PDB: 2nry_A* 2oib_A* 2oic_A* 2oid_A* 2o8y_A*
Probab=100.00 E-value=9e-39 Score=352.88 Aligned_cols=283 Identities=30% Similarity=0.452 Sum_probs=224.1
Q ss_pred CCccCHHHHHHHhccCccC------CcccccCCceEEEEEEecCCeEEEEEEeeccc----ccchHHHHHHHHHHHhcCC
Q 047768 688 FPMVSYKELSKATNEFSSS------NTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ----KGGSKSFAAECEALRSIRH 757 (1009)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~~------~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h 757 (1009)
...+++.++..++++|... +.||+|+||.||+|.+ +++.||||++.... ....+.+.+|++++++++|
T Consensus 12 ~~~~~~~~l~~~~~~f~~~~~~~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h 89 (307)
T 2nru_A 12 FHSFSFYELKNVTNNFDERPISVGGNKMGEGGFGVVYKGYV--NNTTVAVKKLAAMVDITTEELKQQFDQEIKVMAKCQH 89 (307)
T ss_dssp CEECCHHHHHHHTTTTCCSBTTTTCCEEEECSSEEEEEEES--SSCEEEEEEECCCTTSCTTTHHHHHHHHHHHHHHCCC
T ss_pred CCcccHHHHHHHHcccccccccccCCccccCCCeEEEEEEE--CCceEEEEEEecccCcchHHHHHHHHHHHHHHHhcCC
Confidence 4567889999999888876 8999999999999986 58899999986432 2234678999999999999
Q ss_pred CCcceEEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecC
Q 047768 758 RNLIKIVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGD 837 (1009)
Q Consensus 758 ~niv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrd 837 (1009)
|||+++++++.. ....++||||+++|+|.+++..... ...+++..++.++.|++.||+|||++ +|+|||
T Consensus 90 ~~i~~~~~~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~d 158 (307)
T 2nru_A 90 ENLVELLGFSSD-----GDDLCLVYVYMPNGSLLDRLSCLDG---TPPLSWHMRCKIAQGAANGINFLHEN---HHIHRD 158 (307)
T ss_dssp TTBCCEEEEECS-----SSSCEEEEECCTTCBHHHHHHTGGG---CCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSC
T ss_pred CCeEEEEEEEec-----CCceEEEEEecCCCcHHHHHHhccC---CCCCCHHHHHHHHHHHHHHHHHHhcC---CeecCC
Confidence 999999999754 3567999999999999999975432 12489999999999999999999999 999999
Q ss_pred CCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCC
Q 047768 838 LKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRR 917 (1009)
Q Consensus 838 lk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~ 917 (1009)
|||+||+++.++.+||+|||+++....... ........||+.|+|||++.+ .++.++||||||+++|||++|+
T Consensus 159 lkp~Nili~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~~~g~~~y~aPE~~~~-~~~~~~Dv~slG~il~~l~~g~ 231 (307)
T 2nru_A 159 IKSANILLDEAFTAKISDFGLARASEKFAQ------TVMTSRIVGTTAYMAPEALRG-EITPKSDIYSFGVVLLEIITGL 231 (307)
T ss_dssp CCGGGEEECTTCCEEECCCTTCEECCSCSS------CEECSSCCSCGGGCCHHHHTT-EECTHHHHHHHHHHHHHHHHCC
T ss_pred CCHHHEEEcCCCcEEEeecccccccccccc------cccccccCCCcCcCChHHhcC-CCCccchhHHHHHHHHHHHHCC
Confidence 999999999999999999999987654211 111223568999999998765 5899999999999999999999
Q ss_pred CCCcccccCCccHHHHHHH--hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 918 RPTESMFNEGLTLHEFAKR--ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 918 ~p~~~~~~~~~~~~~~~~~--~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.||........ ...+... .....+.+.++..+.. ....+...+.+++.+||+.||.+|||+.|+++
T Consensus 232 ~p~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~l~~li~~cl~~~p~~Rps~~~l~~ 299 (307)
T 2nru_A 232 PAVDEHREPQL-LLDIKEEIEDEEKTIEDYIDKKMND-----------ADSTSVEAMYSVASQCLHEKKNKRPDIKKVQQ 299 (307)
T ss_dssp CSBCTTBSSSB-TTHHHHHHHTTSCCHHHHSCSSCSC-----------CCHHHHHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred CCcccCcchHH-HHHHHHHhhhhhhhhhhhccccccc-----------cchHHHHHHHHHHHHHcCCCcccCcCHHHHHH
Confidence 99976443321 1112111 1122234444443322 23356778999999999999999999999999
Q ss_pred HHHHHHH
Q 047768 996 KLCHARQ 1002 (1009)
Q Consensus 996 ~L~~i~~ 1002 (1009)
.|+++.+
T Consensus 300 ~L~~l~~ 306 (307)
T 2nru_A 300 LLQEMTA 306 (307)
T ss_dssp HHHHHC-
T ss_pred HHHHHhc
Confidence 9998864
No 66
>3zgw_A Maternal embryonic leucine zipper kinase; transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=7e-40 Score=365.48 Aligned_cols=252 Identities=24% Similarity=0.318 Sum_probs=197.0
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
..++|.+.+.||+|+||+||+|++..+|+.||||++..... .....+.+|++++++++||||+++++++.. ...
T Consensus 8 l~~~y~i~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~Ei~~l~~l~hpnIv~l~~~~~~-----~~~ 82 (347)
T 3zgw_A 8 LLKYYELHETIGTGGFAKVKLACHILTGEMVAIKIMDKNTLGSDLPRIKTEIEALKNLRHQHICQLYHVLET-----ANK 82 (347)
T ss_dssp TTTTEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEESSCC---CCHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSE
T ss_pred HhcCeEEEEEEEcCCCeEEEEEEECCCCCEEEEEEEEccccchHHHHHHHHHHHHHhCCCCCEeeEEEEEEe-----CCE
Confidence 35689999999999999999999999999999999965432 234678999999999999999999999754 367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+++|+|.+++..... +++.+++.++.|++.|++|||+. +|+||||||+||++++++.+||+|||
T Consensus 83 ~~lv~E~~~gg~L~~~l~~~~~------l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~kL~DFG 153 (347)
T 3zgw_A 83 IFMVLEYCPGGELFDYIISQDR------LSEEETRVVFRQIVSAVAYVHSQ---GYAHRDLKPENLLFDEYHKLKLIDFG 153 (347)
T ss_dssp EEEEEECCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEEeCCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCCccHHHEEEcCCCCEEEEecc
Confidence 8999999999999999987653 89999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
++........ .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||.... .......
T Consensus 154 ~a~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~Pf~~~~-----~~~~~~~ 221 (347)
T 3zgw_A 154 LCAKPKGNKD-------YHLQTCCGSLAYAAPELIQGKSYLGSEADVWSMGILLYVLMCGFLPFDDDN-----VMALYKK 221 (347)
T ss_dssp TCBC---------------------CGGGCCHHHHTTC---CCHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHH
T ss_pred CcccccCCCC-------ccccccCCccCccCHHHHcCCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCC-----HHHHHHH
Confidence 9976543211 12234679999999999998876 899999999999999999999997422 2222111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
..... .. .+ .....++.+++.+|++.||++|||++|+++.
T Consensus 222 i~~~~--------~~-~p-----------~~~s~~~~~li~~~L~~dP~~Rps~~eil~h 261 (347)
T 3zgw_A 222 IMRGK--------YD-VP-----------KWLSPSSILLLQQMLQVDPKKRISMKNLLNH 261 (347)
T ss_dssp HHHTC--------CC-CC-----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHTC
T ss_pred HHcCC--------CC-CC-----------CCCCHHHHHHHHHHcccCHhHCcCHHHHhcC
Confidence 11100 00 00 0112346789999999999999999999864
No 67
>3p86_A Serine/threonine-protein kinase CTR1; ETR1, ERS1, ETR2, phosphorylation, transferase; HET: STU; 2.50A {Arabidopsis thaliana} PDB: 3ppz_A*
Probab=100.00 E-value=8.3e-40 Score=360.56 Aligned_cols=263 Identities=26% Similarity=0.373 Sum_probs=200.6
Q ss_pred HHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 698 KATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 698 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
...++|.+.+.||+|+||+||+|++ +++.||||++...... ..+.+.+|++++++++||||+++++++...
T Consensus 34 i~~~~y~i~~~lG~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~----- 106 (309)
T 3p86_A 34 IPWCDLNIKEKIGAGSFGTVHRAEW--HGSDVAVKILMEQDFHAERVNEFLREVAIMKRLRHPNIVLFMGAVTQP----- 106 (309)
T ss_dssp CCGGGEEEEEEEEECSSEEEEEEEE--TTEEEEEEEECCCCCSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECST-----
T ss_pred CChhHceeeeEeecCCCeEEEEEEE--CCCcEEEEEecCCCCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-----
Confidence 3456899999999999999999987 5899999998654322 235788999999999999999999997543
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceecCCCCCceeeCCCCceEE
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPP--IVHGDLKPSNVLLDHDMVAHV 853 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~--ivHrdlk~~Nill~~~~~~kl 853 (1009)
...++||||+++|+|.+++...... ..+++..++.++.|++.||+|||++ + |+||||||+||+++.++.+||
T Consensus 107 ~~~~lv~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~aL~~LH~~---~~~ivH~Dikp~NIll~~~~~~kL 180 (309)
T 3p86_A 107 PNLSIVTEYLSRGSLYRLLHKSGAR---EQLDERRRLSMAYDVAKGMNYLHNR---NPPIVHRNLKSPNLLVDKKYTVKV 180 (309)
T ss_dssp TCCEEEEECCTTCBHHHHHHSTTHH---HHSCHHHHHHHHHHHHHHHHHHHTS---SSCCCCTTCCGGGEEECTTCCEEE
T ss_pred CceEEEEecCCCCcHHHHHhhcCCC---CCCCHHHHHHHHHHHHHHHHHHHcC---CCCEECCCCChhhEEEeCCCcEEE
Confidence 5679999999999999999865421 2388999999999999999999998 7 999999999999999999999
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||...... ..
T Consensus 181 ~Dfg~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~Pf~~~~~~-----~~ 247 (309)
T 3p86_A 181 CDFGLSRLKASTF--------LSSKSAAGTPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPA-----QV 247 (309)
T ss_dssp CCCC-------------------------CCTTSCHHHHTTCCCCTTHHHHHHHHHHHHHHHCCCTTTTSCHH-----HH
T ss_pred CCCCCCccccccc--------cccccCCCCccccChhhhcCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-----HH
Confidence 9999998544321 1223457899999999999999999999999999999999999999743221 11
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
..... . ..... .. +..+..++.+++.+||+.||++|||++|+++.|+.+.+..
T Consensus 248 ~~~~~-----~-~~~~~-~~-----------~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~~L~~~~~~~ 300 (309)
T 3p86_A 248 VAAVG-----F-KCKRL-EI-----------PRNLNPQVAAIIEGCWTNEPWKRPSFATIMDLLRPLIKSA 300 (309)
T ss_dssp HHHHH-----H-SCCCC-CC-----------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHC--
T ss_pred HHHHH-----h-cCCCC-CC-----------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhC
Confidence 11100 0 00000 00 0122345789999999999999999999999999887654
No 68
>3g2f_A Bone morphogenetic protein receptor type-2; kinase, structural genomics, structural genomics consortium, ATP-binding, disease mutation; HET: ADP; 2.35A {Homo sapiens}
Probab=100.00 E-value=1.2e-39 Score=364.93 Aligned_cols=293 Identities=25% Similarity=0.325 Sum_probs=210.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHH--HHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEA--LRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~--l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|++ +++.||||+++... ...+..|.++ +..++||||+++++++......+...
T Consensus 12 ~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~~~~~~~~ 86 (336)
T 3g2f_A 12 LDNLKLLELIGRGRYGAVYKGSL--DERPVAVKVFSFAN---RQNFINEKNIYRVPLMEHDNIARFIVGDERVTADGRME 86 (336)
T ss_dssp TTSEEEEEEEEECSSEEEEEEEE--TTEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEEECTTSCEE
T ss_pred hHHhheeeecccCCCeEEEEEEE--CCeEEEEEEeeccc---hhhHHHHHHHHHHHhccCcchhhheecccccccCCCce
Confidence 46899999999999999999976 68999999996433 3444445554 44589999999998776554555667
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcC------CCCceecCCCCCceeeCCCCce
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHC------QPPIVHGDLKPSNVLLDHDMVA 851 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~------~~~ivHrdlk~~Nill~~~~~~ 851 (1009)
.++||||+++|+|.+++.... .++..++.++.|++.||+|||+.+ .++|+||||||+||+++.++.+
T Consensus 87 ~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~qi~~~L~~LH~~~~~~~~~~~~ivH~Dikp~Nill~~~~~~ 159 (336)
T 3g2f_A 87 YLLVMEYYPNGSLXKYLSLHT-------SDWVSSCRLAHSVTRGLAYLHTELPRGDHYKPAISHRDLNSRNVLVKNDGTC 159 (336)
T ss_dssp EEEEECCCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHCCBCCGGGCBCCEECSSCSGGGEEECTTSCE
T ss_pred EEEEEecCCCCcHHHHHhhcc-------cchhHHHHHHHHHHHHHHHHHhhhccccccccceeecccccceEEEcCCCcE
Confidence 899999999999999997654 588999999999999999999863 3389999999999999999999
Q ss_pred EEeccccccccCCCCCCCccccCCccccccccccccCccccCC-------CCCCCcccchHHHHHHHHHHhCCCCCcccc
Q 047768 852 HVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-------GEASMRGGVYSYGILLLEIFTRRRPTESMF 924 (1009)
Q Consensus 852 kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwS~Gvvl~elltg~~p~~~~~ 924 (1009)
||+|||+++.....................||+.|+|||++.+ ..++.++|||||||++|||++|+.||....
T Consensus 160 kL~DFG~a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~ 239 (336)
T 3g2f_A 160 VISDFGLSMRLTGNRLVRPGEEDNAAISEVGTIRYMAPEVLEGAVNLRDXESALKQVDMYALGLIYWEIFMRCTDLFPGE 239 (336)
T ss_dssp EECCCTTCEECSSSSCC---------CCTTSCGGGCCHHHHTTCCCGGGHHHHHHHHHHHHHHHHHHHHHTTBGGGSTTS
T ss_pred EEeeccceeecccccccCccccccccccCCCccceeCchhhcCCcccccccccccccchHHHHHHHHHHHhcCCcCCCcc
Confidence 9999999987765432221112223334679999999999887 456789999999999999999987764322
Q ss_pred cCCc---cHHHHHHHh-ccchhhhccC-CCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 047768 925 NEGL---TLHEFAKRA-LPEKVMEIVD-PSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCH 999 (1009)
Q Consensus 925 ~~~~---~~~~~~~~~-~~~~~~~~~d-~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~ 999 (1009)
.... ......... ..+.....+. ....+... ........+..++.+++.+||+.||++|||++|+++.|++
T Consensus 240 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~l~~li~~cl~~dP~~Rps~~e~l~~L~~ 315 (336)
T 3g2f_A 240 SVPEYQMAFQTEVGNHPTFEDMQVLVSREKQRPKFP----EAWKENSLAVRSLKETIEDCWDQDAEARLTAQXAEERMAE 315 (336)
T ss_dssp CCCCCCCTTHHHHCSSCCHHHHHHHHTTSCCCCCCC----TTCCCCSHHHHHHHHHHHHHSCSSGGGSCCHHHHHHHHHH
T ss_pred chhHHHHhhhcccCCCchHHHHHhhhcccccCCCCC----cccccccchHHHHHHHHHHHhcCChhhCcchHHHHHHHHH
Confidence 2110 000000000 0000111111 00000000 0011123456679999999999999999999999999999
Q ss_pred HHHhhhcCC
Q 047768 1000 ARQNFLGQR 1008 (1009)
Q Consensus 1000 i~~~~~~~~ 1008 (1009)
+...|..++
T Consensus 316 ll~~~~~~~ 324 (336)
T 3g2f_A 316 LMMIWERNK 324 (336)
T ss_dssp HHHCCCC--
T ss_pred HHHHHHhcc
Confidence 999987654
No 69
>2izr_A Casein kinase I isoform gamma-3; serine/threonine-protein kinase, transferase, ATP- binding, phosphorylation, nucleotide-binding; HET: BRK; 1.3A {Homo sapiens} PDB: 2izs_A* 2izt_A* 2izu_A* 2chl_A* 2c47_A* 2cmw_A*
Probab=100.00 E-value=3.2e-39 Score=360.20 Aligned_cols=270 Identities=20% Similarity=0.240 Sum_probs=212.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||+||+|++..+++.||||++.... ..+.+.+|+++++++ +||||+++++++... ...
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~-----~~~ 80 (330)
T 2izr_A 8 GPNFRVGKKIGCGNFGELRLGKNLYTNEYVAIKLEPMKS--RAPQLHLEYRFYKQLGSGDGIPQVYYFGPCG-----KYN 80 (330)
T ss_dssp TTTEEEEEECCC-CTTSEEEEEETTTTEEEEEEEEETTC--SSCCHHHHHHHHHHHCSCTTSCCEEEEEEET-----TEE
T ss_pred cCCeEEEEEeeccCCceEEEEEECCCCcEEEEEEecccc--chHHHHHHHHHHHHhhCCCCCCEEEEEEecC-----Ccc
Confidence 357999999999999999999998899999999986443 245688999999999 999999999987653 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc-----eEE
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV-----AHV 853 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~-----~kl 853 (1009)
++||||+ +++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++. +||
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~iiHrDlkp~Nill~~~~~~~~~~~kl 151 (330)
T 2izr_A 81 AMVLELL-GPSLEDLFDLCDR-----TFSLKTVLMIAIQLISRMEYVHSK---NLIYRDVKPENFLIGRPGNKTQQVIHI 151 (330)
T ss_dssp EEEEECC-CCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTCTTSEEE
T ss_pred EEEEEeC-CCCHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCCHHHeeeccCCCCCCceEEE
Confidence 9999999 9999999987533 399999999999999999999999 9999999999999999887 999
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
+|||+++........... .........||+.|+|||++.+..++.++|||||||++|||++|+.||...... ...+.
T Consensus 152 ~DFg~a~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~Pf~~~~~~--~~~~~ 228 (330)
T 2izr_A 152 IDFALAKEYIDPETKKHI-PYREHKSLTGTARYMSINTHLGKEQSRRDDLEALGHMFMYFLRGSLPWQGLKAD--TLKER 228 (330)
T ss_dssp CCCTTCEESBCTTTCCBC-CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTTTCCCS--SHHHH
T ss_pred EEcccceeeecCCCCccc-cccccCCcCCCccccChHHHcCCCCCchhHHHHHHHHHHHHhcCCCCccccccc--cHHHH
Confidence 999999876543221111 111234567999999999999999999999999999999999999999764322 12211
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
........... ........++ ++.+++..|++.||.+||+++++.+.|+.+.+..
T Consensus 229 ~~~i~~~~~~~---------------~~~~~~~~~p-~~~~li~~~l~~~p~~RP~~~~l~~~l~~~~~~~ 283 (330)
T 2izr_A 229 YQKIGDTKRAT---------------PIEVLCENFP-EMATYLRYVRRLDFFEKPDYDYLRKLFTDLFDRK 283 (330)
T ss_dssp HHHHHHHHHHS---------------CHHHHTTTCH-HHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHhhhccC---------------CHHHHhccCh-HHHHHHHHHHhCCCCCCCCHHHHHHHHHHHHHHc
Confidence 11110000000 0000001123 6889999999999999999999999999887653
No 70
>4eqm_A Protein kinase; transferase; HET: ANP; 3.00A {Staphylococcus aureus subsp}
Probab=100.00 E-value=2.2e-39 Score=354.95 Aligned_cols=263 Identities=22% Similarity=0.367 Sum_probs=206.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc---chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG---GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|++..+++.||||++...... ..+.+.+|++++++++||||+++++++.. ..
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~-----~~ 84 (294)
T 4eqm_A 10 NERYKIVDKLGGGGMSTVYLAEDTILNIKVAIKAIFIPPREKEETLKRFEREVHNSSQLSHQNIVSMIDVDEE-----DD 84 (294)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCSEEEEEEEECCSSCCHHHHHHHHHHHHHHTTCCBTTBCCEEEEEEC-----SS
T ss_pred hccEEEEEEEccCCCEEEEEEEECCCCCeEEEEEeccCccccHHHHHHHHHHHHHHhcCCCCCCceEEEeeee-----CC
Confidence 35799999999999999999999989999999998654332 23578899999999999999999999654 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 85 ~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Df 155 (294)
T 4eqm_A 85 CYYLVMEYIEGPTLSEYIESHG------PLSVDTAINFTNQILDGIKHAHDM---RIVHRDIKPQNILIDSNKTLKIFDF 155 (294)
T ss_dssp EEEEEEECCCSCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC
T ss_pred eEEEEEeCCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCCEEEEeC
Confidence 7899999999999999998765 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++....... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ......
T Consensus 156 g~~~~~~~~~~-------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~-----~~~~~~ 223 (294)
T 4eqm_A 156 GIAKALSETSL-------TQTNHVLGTVQYFSPEQAKGEATDECTDIYSIGIVLYEMLVGEPPFNGETA-----VSIAIK 223 (294)
T ss_dssp SSSTTC--------------------CCSSCCHHHHHTCCCCTTHHHHHHHHHHHHHHHSSCSSCSSCH-----HHHHHH
T ss_pred CCccccccccc-------cccCccccCccccCHhHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCh-----HHHHHH
Confidence 99987653221 122235689999999999999999999999999999999999999974321 111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHHHHHh
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-EMTDVVVKLCHARQN 1003 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-t~~evl~~L~~i~~~ 1003 (1009)
. +.......+. ......+..+.+++.+|++.||++|| +++++.+.|+.+..+
T Consensus 224 ~--------~~~~~~~~~~-------~~~~~~~~~l~~li~~~l~~dp~~R~~~~~~l~~~l~~~~~~ 276 (294)
T 4eqm_A 224 H--------IQDSVPNVTT-------DVRKDIPQSLSNVILRATEKDKANRYKTIQEMKDDLSSVLHE 276 (294)
T ss_dssp H--------HSSCCCCHHH-------HSCTTSCHHHHHHHHHHSCSSGGGSCSSHHHHHHHHHTSSSS
T ss_pred H--------hhccCCCcch-------hcccCCCHHHHHHHHHHhcCCHhHccccHHHHHHHHHHHHhh
Confidence 1 1111111100 01112345688999999999999999 999999988876543
No 71
>2yab_A Death-associated protein kinase 2; apoptosis, transferase; HET: AMP; 1.90A {Mus musculus} PDB: 2yaa_A* 2ya9_A*
Probab=100.00 E-value=3.9e-39 Score=361.81 Aligned_cols=252 Identities=22% Similarity=0.281 Sum_probs=204.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc------chHHHHHHHHHHHhcCCCCcceEEeeeeccccC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG------GSKSFAAECEALRSIRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 773 (1009)
.++|.+.+.||+|+||+||+|+++.+|+.||||+++..... ..+.+.+|++++++++||||+++++++..
T Consensus 11 ~~~y~~~~~LG~G~fg~V~~~~~~~~~~~~avK~i~~~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~---- 86 (361)
T 2yab_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVCREEIEREVSILRQVLHPNIITLHDVYEN---- 86 (361)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHTTCCCTTBCCEEEEEEC----
T ss_pred hhceEEeeEEeeCcCEEEEEEEECCCCCEEEEEEEEccccccccchhHHHHHHHHHHHHHhCCCcCCCcEEEEEEe----
Confidence 45799999999999999999999999999999999754322 24678999999999999999999999754
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC----
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM---- 849 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~---- 849 (1009)
....++||||+++|+|.+++.... .+++.++..++.|++.||.|||+. +|+||||||+||+++.++
T Consensus 87 -~~~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~~ 156 (361)
T 2yab_A 87 -RTDVVLILELVSGGELFDFLAQKE------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIP 156 (361)
T ss_dssp -SSEEEEEEECCCSCBHHHHHTTCS------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSC
T ss_pred -CCEEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEeCCCCCcc
Confidence 367899999999999999997654 389999999999999999999999 999999999999998877
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCcc
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLT 929 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~ 929 (1009)
.+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.....
T Consensus 157 ~vkl~DFG~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslGvil~~ll~g~~Pf~~~~~---- 223 (361)
T 2yab_A 157 HIKLIDFGLAHEIEDGV---------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---- 223 (361)
T ss_dssp CEEECCCSSCEECCTTC---------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH----
T ss_pred CEEEEecCCceEcCCCC---------ccccCCCCccEECchHHcCCCCCccccHHHHHHHHHHHHhCCCCCCCCCH----
Confidence 79999999998765421 22345799999999999999999999999999999999999999974321
Q ss_pred HHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 930 LHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 930 ~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.+.... +........+.. .......+.+++.+|+..||++|||+.|+++
T Consensus 224 -~~~~~~--------i~~~~~~~~~~~--------~~~~s~~~~~li~~~L~~dP~~R~t~~e~l~ 272 (361)
T 2yab_A 224 -QETLAN--------ITAVSYDFDEEF--------FSQTSELAKDFIRKLLVKETRKRLTIQEALR 272 (361)
T ss_dssp -HHHHHH--------HHTTCCCCCHHH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred -HHHHHH--------HHhcCCCCCchh--------ccCCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 111111 111111110000 0012245779999999999999999999974
No 72
>4hcu_A Tyrosine-protein kinase ITK/TSK; transferase-transferase inhibitor complex; HET: 13L; 1.43A {Homo sapiens} PDB: 4hct_A* 4hcv_A* 3t9t_A* 1sm2_A* 1snu_A* 1snx_A 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.1e-39 Score=350.61 Aligned_cols=258 Identities=26% Similarity=0.416 Sum_probs=209.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|.+. +++.||||++.... ...+.+.+|++++++++||||+++++++.. ....+
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 81 (269)
T 4hcu_A 9 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGA-MSEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPIC 81 (269)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECS-----SSSEE
T ss_pred hhhceeeheecCCCccEEEEEEec-CCCeEEEEEecccc-cCHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCceE
Confidence 467899999999999999999986 68889999997443 235779999999999999999999999754 36689
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++++|.+++..... .+++..++.++.|++.|++|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 82 lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~~ 153 (269)
T 4hcu_A 82 LVFEFMEHGCLSDYLRTQRG-----LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMT 153 (269)
T ss_dssp EEEECCTTCBHHHHHHTTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECGGGCEEECCTTGG
T ss_pred EEEEeCCCCcHHHHHHhcCc-----ccCHHHHHHHHHHHHHHHHHHHhC---CeecCCcchheEEEcCCCCEEecccccc
Confidence 99999999999999977554 389999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhc
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
+...... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||..... .......
T Consensus 154 ~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~~g~~p~~~~~~-----~~~~~~~- 220 (269)
T 4hcu_A 154 RFVLDDQ-------YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRSN-----SEVVEDI- 220 (269)
T ss_dssp GGBCCHH-------HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHHHHH-
T ss_pred ccccccc-------cccccCcccccccCCHHHhcCCCCCchhhhHHHHHHHHHHhcCCCCCCCCCCH-----HHHHHHH-
Confidence 8664321 112233557889999999999999999999999999999999 9999874321 1111111
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
........+ ......+.+++.+|++.||++|||++|+++.|+++.+.
T Consensus 221 -------~~~~~~~~~-----------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~l~~l~~~ 267 (269)
T 4hcu_A 221 -------STGFRLYKP-----------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 267 (269)
T ss_dssp -------HTTCCCCCC-----------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -------hcCccCCCC-----------CcCCHHHHHHHHHHccCCcccCcCHHHHHHHHHHHHHc
Confidence 000000000 11234578999999999999999999999999998764
No 73
>1csn_A Casein kinase-1; phosphotransferase; HET: ATP; 2.00A {Schizosaccharomyces pombe} SCOP: d.144.1.7 PDB: 1eh4_A* 2csn_A*
Probab=100.00 E-value=7.3e-39 Score=352.02 Aligned_cols=270 Identities=17% Similarity=0.199 Sum_probs=214.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||+||+|++..+++.||||++.... ..+.+.+|+++++++ +|+|++++++++.. ....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~~~~l~~~~~i~~~~~~~~~-----~~~~ 81 (298)
T 1csn_A 9 GVHYKVGRRIGEGSFGVIFEGTNLLNNQQVAIKFEPRRS--DAPQLRDEYRTYKLLAGCTGIPNVYYFGQE-----GLHN 81 (298)
T ss_dssp TTTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEECCT--TSCCHHHHHHHHHHTTTCTTCCCEEEEEEE-----TTEE
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCcEEEEEEeccCC--ccHHHHHHHHHHHHHhcCCCCCeEEeecCC-----Ccee
Confidence 457999999999999999999998899999999985432 345688999999999 79999999998754 3678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc-----eEE
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV-----AHV 853 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~-----~kl 853 (1009)
++||||+ +++|.+++..... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++. +||
T Consensus 82 ~lv~e~~-~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~NIl~~~~~~~~~~~~kl 152 (298)
T 1csn_A 82 VLVIDLL-GPSLEDLLDLCGR-----KFSVKTVAMAAKQMLARVQSIHEK---SLVYRDIKPDNFLIGRPNSKNANMIYV 152 (298)
T ss_dssp EEEEECC-CCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECCSSSTTTTCEEE
T ss_pred EEEEEec-CCCHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEeccCCCCCCCeEEE
Confidence 9999999 9999999987643 389999999999999999999999 9999999999999987776 999
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCc--cHH
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGL--TLH 931 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~--~~~ 931 (1009)
+|||+++............ ........||+.|+|||++.+..++.++|||||||++|||++|+.||........ ...
T Consensus 153 ~Dfg~~~~~~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~~~~~~~ 231 (298)
T 1csn_A 153 VDFGMVKFYRDPVTKQHIP-YREKKNLSGTARYMSINTHLGREQSRRDDLEALGHVFMYFLRGSLPWQGLKAATNKQKYE 231 (298)
T ss_dssp CCCTTCEESBCTTTCCBCC-CCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCSCCHHHHHH
T ss_pred EECcccccccccccccccc-ccCccCCCCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHcCCCCcchhhccccHHHHH
Confidence 9999998776543211111 1223456799999999999999999999999999999999999999976432211 011
Q ss_pred HHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 932 EFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 932 ~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
.......+....+. ...++.++.+++.+||+.||++||++++|++.|+++.++..
T Consensus 232 ~~~~~~~~~~~~~~-------------------~~~~~~~l~~li~~~l~~dp~~RP~~~~l~~~l~~~~~~~~ 286 (298)
T 1csn_A 232 RIGEKKQSTPLREL-------------------CAGFPEEFYKYMHYARNLAFDATPDYDYLQGLFSKVLERLN 286 (298)
T ss_dssp HHHHHHHHSCHHHH-------------------TTTSCHHHHHHHHHHHHCCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred HHHhhccCccHHHH-------------------HhhCcHHHHHHHHHHhcCCcccCCCHHHHHHHHHHHHHhcC
Confidence 11111100101000 01234568899999999999999999999999999987653
No 74
>1o6l_A RAC-beta serine/threonine protein kinase; protein kinase, transferase, serine/threonine-protein kinase; HET: TPO ANP; 1.6A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jdo_A* 2jdr_A* 2uw9_A* 2x37_A* 2x39_A* 2xh5_A* 3d0e_A* 3e87_A* 3e88_A* 3e8d_A* 1o6k_A* 1mrv_A 1mry_A 1gzn_A 1gzk_A 1gzo_A 3qkl_A* 3ocb_A* 3ow4_A* 3qkk_A* ...
Probab=100.00 E-value=4.7e-39 Score=357.82 Aligned_cols=249 Identities=23% Similarity=0.277 Sum_probs=204.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecc---cccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLE---QKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||+||+|+.+.+|+.||||+++.. .......+.+|++++++++||||+++++++.. ..
T Consensus 4 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~l~~~~~~-----~~ 78 (337)
T 1o6l_A 4 MNDFDYLKLLGKGTFGKVILVREKATGRYYAMKILRKEVIIAKDEVAHTVTESRVLQNTRHPFLTALKYAFQT-----HD 78 (337)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCCTTBCCEEEEEEC-----SS
T ss_pred hHHeEEEEEEecCCCeEEEEEEECCCCCEEEEEEEeHHHhhhhhHHHHHHHHHHHHHhCCCCcCcceEEEEEe-----CC
Confidence 46899999999999999999999999999999999754 23345678899999999999999999998754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++..... +++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 79 ~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vkL~DF 149 (337)
T 1o6l_A 79 RLCFVMEYANGGELFFHLSRERV------FTEERARFYGAEIVSALEYLHSR---DVVYRDIKLENLMLDKDGHIKITDF 149 (337)
T ss_dssp EEEEEEECCTTCBHHHHHHHHSC------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEeCCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeecCcCCHHHEEECCCCCEEEeec
Confidence 78999999999999999987543 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.... .......
T Consensus 150 G~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-----~~~~~~~ 216 (337)
T 1o6l_A 150 GLCKEGISDG--------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQD-----HERLFEL 216 (337)
T ss_dssp TTCBCSCCTT--------CCBCCCEECGGGCCGGGGSSSCBCTTHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHH
T ss_pred cchhhcccCC--------CcccccccChhhCChhhhcCCCCCchhhcccchhHHHHHhcCCCCCCCCC-----HHHHHHH
Confidence 9998543211 22334679999999999999999999999999999999999999996432 1111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-----EMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-----t~~evl~ 995 (1009)
..... .. .+ .....++.+++.+|++.||++|| +++|+++
T Consensus 217 i~~~~--------~~-~p-----------~~~s~~~~~li~~lL~~dP~~R~g~~~~~~~ei~~ 260 (337)
T 1o6l_A 217 ILMEE--------IR-FP-----------RTLSPEAKSLLAGLLKKDPKQRLGGGPSDAKEVME 260 (337)
T ss_dssp HHHCC--------CC-CC-----------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHcCC--------CC-CC-----------CCCCHHHHHHHHHHhhcCHHHhcCCCCCCHHHHHc
Confidence 11110 00 00 01224577999999999999999 8888865
No 75
>3poz_A Epidermal growth factor receptor; kinase domain, anti-oncogene, ATP-binding, cell cycle, disea mutation, glycoprotein, membrane, nucleotide-binding; HET: 03P; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 2itx_A* 2ity_A* 2j5f_A* 2j6m_A* 2itw_A* 1m14_A 1m17_A* 3vjo_A* 2gs6_A* 2gs2_A* 2rf9_A 4g5j_A* 1xkk_A* 2eb2_A 3gop_A 2eb3_A* 2itn_A* 2ito_A* 2itp_A* 2itq_A* ...
Probab=100.00 E-value=1e-39 Score=363.35 Aligned_cols=260 Identities=25% Similarity=0.431 Sum_probs=202.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeE----EEEEEeeccc-ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGML----VAVKVINLEQ-KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
.++|.+.+.||+|+||+||+|++..+++. ||+|.++... ....+.+.+|++++++++||||++++++|..
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----- 88 (327)
T 3poz_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 88 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECC----CCEEEEEEEC-------CHHHHHHHHHHHHHCCBTTBCCEEEEEES-----
T ss_pred HHHcccceEEeeCCCeEEEEEEEcCCCceEEEEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEeEEEEEEec-----
Confidence 35799999999999999999998766654 5778775332 2345789999999999999999999999864
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
...++|+||+.+|+|.+++..... .+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 89 -~~~~~v~e~~~~g~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIll~~~~~~kl~ 159 (327)
T 3poz_A 89 -STVQLITQLMPFGCLLDYVREHKD-----NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKIT 159 (327)
T ss_dssp -SSEEEEEECCTTCBHHHHHHHSTT-----SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEEC
T ss_pred -CCeEEEEEecCCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCChheEEECCCCCEEEc
Confidence 346899999999999999987654 389999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 933 (1009)
|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||...... .....
T Consensus 160 Dfg~a~~~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~ 231 (327)
T 3poz_A 160 DFGLAKLLGAEEK------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSI 231 (327)
T ss_dssp CTTHHHHHTTTCC-------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHH
T ss_pred cCcceeEccCCcc------cccccCCCccccccChHHhccCCCCchhhhhhhHHHHHHHHhcCCCCccCCCHH--HHHHH
Confidence 9999987754321 122233557889999999999999999999999999999999 99999754322 11221
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
..... ... ....+...+.+++.+||+.||++||++.|+++.|+.+.++
T Consensus 232 ~~~~~-----------~~~-----------~~~~~~~~~~~li~~~l~~~p~~Rps~~ell~~l~~~~~~ 279 (327)
T 3poz_A 232 LEKGE-----------RLP-----------QPPICTIDVYMIMVKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp HHTTC-----------CCC-----------CCTTBCHHHHHHHHHHTCSCGGGSCCHHHHHHHHHHHHTS
T ss_pred HHcCC-----------CCC-----------CCccCCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHhh
Confidence 11100 000 0112334678999999999999999999999999988653
No 76
>4euu_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: SEP BX7; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.1e-38 Score=354.03 Aligned_cols=282 Identities=19% Similarity=0.234 Sum_probs=214.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc-ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ-KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||+||+|++..+++.||||+++... ....+.+.+|++++++++||||+++++++... .....
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~~ 84 (319)
T 4euu_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRHK 84 (319)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCCE
T ss_pred CCCEEEEEEecCCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCcceEEEEeecC---CCceE
Confidence 357999999999999999999999889999999997543 23456788999999999999999999987643 33477
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee----CCCCceEEe
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL----DHDMVAHVS 854 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill----~~~~~~kl~ 854 (1009)
++||||+++|+|.+++...... ..+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+
T Consensus 85 ~lv~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~ 158 (319)
T 4euu_A 85 VLIMEFCPCGSLYTVLEEPSNA---YGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLT 158 (319)
T ss_dssp EEEEECCTTCBHHHHHHSGGGT---TCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEECTTSCEEEEEC
T ss_pred EEEEeCCCCCCHHHHHHHhccc---cCCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEEeccCCCCceEEEc
Confidence 9999999999999999875432 2389999999999999999999999 99999999999999 788899999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccC--------CCCCCCcccchHHHHHHHHHHhCCCCCcccccC
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL--------GGEASMRGGVYSYGILLLEIFTRRRPTESMFNE 926 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~--------~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~ 926 (1009)
|||+++...... ......||+.|+|||++. +..++.++|||||||++|||++|+.||......
T Consensus 159 Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~ 229 (319)
T 4euu_A 159 DFGAARELEDDE---------QFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGP 229 (319)
T ss_dssp CCTTCEECCTTC---------CBCCCCSCGGGCCHHHHHHHTSCCCCCCCBCTTHHHHHHHHHHHHHHHSSCSEECTTCG
T ss_pred cCCCceecCCCC---------ceeecccCCCccCHHHhhhccccccccCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCcc
Confidence 999998765431 222456899999999876 578899999999999999999999999754333
Q ss_pred CccHH---HHHHHhccchhhhccCCCCCCh-hhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 047768 927 GLTLH---EFAKRALPEKVMEIVDPSLLPL-EEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCH 999 (1009)
Q Consensus 927 ~~~~~---~~~~~~~~~~~~~~~d~~l~~~-~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~ 999 (1009)
..... .......+.....+....-... ..................+.+++.+|++.||++|||++|+++....
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ll~~~L~~dP~~R~s~~ell~h~~d 306 (319)
T 4euu_A 230 RRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSD 306 (319)
T ss_dssp GGCHHHHHHHHHHCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHH
T ss_pred chhHHHHHHHhcCCCcccchhhhcccCCccccCccCCcccccchhHHHHhHHHHHHhccCChhhhccHHHhhhccHH
Confidence 22222 1111111111111111100000 0000011112334666788999999999999999999999988764
No 77
>1tki_A Titin; serine kinase, muscle, autoinhibition; 2.00A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.6e-39 Score=357.36 Aligned_cols=253 Identities=19% Similarity=0.280 Sum_probs=205.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|.++.+++.||+|+++... .....+.+|+++++.++||||+++++++... ...+
T Consensus 4 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~-~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-----~~~~ 77 (321)
T 1tki_A 4 YEKYMIAEDLGRGEFGIVHRCVETSSKKTYMAKFVKVKG-TDQVLVKKEISILNIARHRNILHLHESFESM-----EELV 77 (321)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCT-HHHHHHHHHHHHHHHSCCTTBCCEEEEEEET-----TEEE
T ss_pred hhceEeeeEEecCCCeEEEEEEECCCCcEEEEEEEecCc-ccHHHHHHHHHHHHhCCCCCCCeEeEEEecC-----CEEE
Confidence 368999999999999999999999999999999986432 2346788999999999999999999997643 6789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC--CCceEEeccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH--DMVAHVSDFG 857 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~--~~~~kl~DfG 857 (1009)
+||||+++|+|.+++..... .+++.+++.++.|++.||.|||++ +|+||||||+||+++. ++.+||+|||
T Consensus 78 lv~e~~~g~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---givH~Dlkp~NIl~~~~~~~~~kl~Dfg 149 (321)
T 1tki_A 78 MIFEFISGLDIFERINTSAF-----ELNEREIVSYVHQVCEALQFLHSH---NIGHFDIRPENIIYQTRRSSTIKIIEFG 149 (321)
T ss_dssp EEECCCCCCBHHHHHTSSSC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSCCCEEECCCT
T ss_pred EEEEeCCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEccCCCCCEEEEECC
Confidence 99999999999999976543 389999999999999999999999 9999999999999987 7899999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... .......
T Consensus 150 ~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~~~i 215 (321)
T 1tki_A 150 QARQLKPG---------DNFRLLFTAPEYYAPEVHQHDVVSTATDMWSLGTLVYVLLSGINPFLAETN-----QQIIENI 215 (321)
T ss_dssp TCEECCTT---------CEEEEEESCGGGSCHHHHTTCEECHHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHHH
T ss_pred CCeECCCC---------CccccccCChhhcCcHHhcCCCCCchhhHHHHHHHHHHHHhCCCCCcCCCH-----HHHHHHH
Confidence 99876542 122345689999999999998899999999999999999999999974321 1111111
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
........... ......++.+++.+|++.||++|||+.|+++.
T Consensus 216 --------~~~~~~~~~~~--------~~~~s~~~~~li~~~L~~dp~~Rpt~~e~l~h 258 (321)
T 1tki_A 216 --------MNAEYTFDEEA--------FKEISIEAMDFVDRLLVKERKSRMTASEALQH 258 (321)
T ss_dssp --------HHTCCCCCHHH--------HTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred --------HcCCCCCChhh--------hccCCHHHHHHHHHHcCCChhHCcCHHHHhcC
Confidence 11111100000 00123457899999999999999999999873
No 78
>3tki_A Serine/threonine-protein kinase CHK1; cell checkpoint, transferase-transferase inhib complex; HET: S25; 1.60A {Homo sapiens} PDB: 2qhm_A* 2r0u_A* 3tkh_A* 2qhn_A* 2hy0_A* 2hog_A* 2hxq_A* 2hxl_A* 3f9n_A*
Probab=100.00 E-value=2.1e-39 Score=359.70 Aligned_cols=254 Identities=22% Similarity=0.296 Sum_probs=202.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|++.+.||+|+||+||+|+++.+++.||||+++.... ...+.+.+|+.+++.++||||+++++++.. ....
T Consensus 6 ~~~y~i~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~-----~~~~ 80 (323)
T 3tki_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRRE-----GNIQ 80 (323)
T ss_dssp TTCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECC-------CHHHHHHHHHHCCCTTBCCEEEEEEC-----SSEE
T ss_pred hhhceeeeEEecCCCEEEEEEEECCCCcEEEEEEEEcccccchHHHHHHHHHHHHhCCCCCCCeEEEEEec-----CCeE
Confidence 3589999999999999999999998999999999965432 224668899999999999999999999764 3678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++|+|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~Dfg~ 151 (323)
T 3tki_A 81 YLFLEYCSGGELFDRIEPDI------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGL 151 (323)
T ss_dssp EEEEECCTTEEGGGGSBTTT------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEEcCCCCcHHHHHhhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccccchHHEEEeCCCCEEEEEeec
Confidence 99999999999999987654 389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++....... ........||+.|+|||++.+..+ +.++||||+||++|||++|+.||............+...
T Consensus 152 a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~- 224 (323)
T 3tki_A 152 ATVFRYNNR------ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK- 224 (323)
T ss_dssp CEECEETTE------ECCBCSCCSCGGGSCHHHHHCSSBCHHHHHHHHHHHHHHHHHHSSCSCSSSCTTSHHHHHHHTT-
T ss_pred cceeccCCc------ccccCCCccCcCccCcHHhccCCCCCCcccHHHHHHHHHHHHhCCCCCCCCchHHHHHHHHhcc-
Confidence 986643211 112234679999999999988776 789999999999999999999997543332222222111
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.....+ ......++.+++.+|++.||++|||+.|+++
T Consensus 225 -----------~~~~~~----------~~~~~~~~~~li~~~L~~dP~~R~t~~eil~ 261 (323)
T 3tki_A 225 -----------KTYLNP----------WKKIDSAPLALLHKILVENPSARITIPDIKK 261 (323)
T ss_dssp -----------CTTSTT----------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----------cccCCc----------cccCCHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 000000 0112345679999999999999999999975
No 79
>3h4j_B AMPK kdaid, SNF1-like protein kinase SSP2; ATP-binding, nucleotide-binding, phosphoprotei serine/threonine-protein kinase, transferase; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=3.6e-39 Score=358.34 Aligned_cols=247 Identities=24% Similarity=0.369 Sum_probs=202.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||+||+|.+..+++.||||++.... ......+.+|+++++.++||||+++++++... .
T Consensus 8 i~~Y~i~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~-----~ 82 (336)
T 3h4j_B 8 IGPYIIRETLGEGSFGKVKLATHYKTQQKVALKFISRQLLKKSDMHMRVEREISYLKLLRHPHIIKLYDVITTP-----T 82 (336)
T ss_dssp ETTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCSHHHHHHHHHHTTCCCTTBCCEEEEEECS-----S
T ss_pred cCCEEEEEEEecCCCeEEEEEEECCCCCEEEEEEEehHHccchhHHHHHHHHHHHHHhCCCCCCCeEEEEEEeC-----C
Confidence 468999999999999999999999899999999996432 23346789999999999999999999997643 6
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+ +|+|.+++..... +++.+++.++.|++.|+.|||+. +|+||||||+||+++.++.+||+||
T Consensus 83 ~~~lv~E~~-~g~l~~~l~~~~~------l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kl~DF 152 (336)
T 3h4j_B 83 DIVMVIEYA-GGELFDYIVEKKR------MTEDEGRRFFQQIICAIEYCHRH---KIVHRDLKPENLLLDDNLNVKIADF 152 (336)
T ss_dssp EEEEEECCC-CEEHHHHHHHHCS------CCHHHHHHHHHHHHHHHHHHHHH---TCCCCCCSTTTEEECTTCCEEECCS
T ss_pred EEEEEEECC-CCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEecCCchhhEEEcCCCCEEEEEe
Confidence 789999999 7899999977653 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++..... .......||+.|+|||++.+..+ +.++||||+||++|||++|+.||......
T Consensus 153 G~s~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~~--------- 214 (336)
T 3h4j_B 153 GLSNIMTDG---------NFLKTSCGSPNYAAPEVINGKLYAGPEVDVWSCGIVLYVMLVGRLPFDDEFIP--------- 214 (336)
T ss_dssp SCTBTTTTS---------BTTCCCTTSTTTSCGGGSCCSGGGCHHHHHHHHHHHHHHHHHSSCSSBCSSST---------
T ss_pred ccceeccCC---------cccccccCCcCcCCHHHHcCCCCCCCccchhHHHHHHHHHHhCCCCCCCccHH---------
Confidence 999866442 12234579999999999988876 78999999999999999999999743211
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.....+.......+ .....++.+++.+|++.||.+|||++|+++
T Consensus 215 -----~~~~~i~~~~~~~p-----------~~~s~~~~~li~~~L~~dP~~Rpt~~eil~ 258 (336)
T 3h4j_B 215 -----NLFKKVNSCVYVMP-----------DFLSPGAQSLIRRMIVADPMQRITIQEIRR 258 (336)
T ss_dssp -----TCBCCCCSSCCCCC-----------TTSCHHHHHHHHTTSCSSGGGSCCHHHHTT
T ss_pred -----HHHHHHHcCCCCCc-----------ccCCHHHHHHHHHHcCCChhHCcCHHHHHh
Confidence 11111111111111 112345779999999999999999999975
No 80
>3l9p_A Anaplastic lymphoma kinase; kinase domain, ATP-binding, glycoprotein, membrane, nucleotide-binding, phosphoprotein, proto-oncogene; 1.80A {Homo sapiens}
Probab=100.00 E-value=1.3e-39 Score=368.20 Aligned_cols=267 Identities=22% Similarity=0.348 Sum_probs=208.4
Q ss_pred hccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeeccc-ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQ-KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 773 (1009)
.++|.+.+.||+|+||+||+|++. .+++.||||+++... ......+.+|+.++++++||||+++++++..
T Consensus 70 ~~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~---- 145 (367)
T 3l9p_A 70 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQ---- 145 (367)
T ss_dssp GGGEEEEEECCCCSSSCEEEEEECC-----CCEEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred HhHeEEeeEeeeCCCEEEEEEEEccCCCCCcceeEEEEecccccChhhHHHHHHHHHHHHhCCCCCCCeEEEEEec----
Confidence 357889999999999999999953 467899999986432 2234578899999999999999999999754
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCC-CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC---
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQL-GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM--- 849 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~-~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~--- 849 (1009)
....++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||++ +|+||||||+|||++.++
T Consensus 146 -~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~~ 221 (367)
T 3l9p_A 146 -SLPRFILLELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGR 221 (367)
T ss_dssp -SSSCEEEEECCTTEEHHHHHHHHSCCSSSCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTC
T ss_pred -CCCCEEEEEeCCCCCHHHHHHhhccccCccccccHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEEecCCCCc
Confidence 356799999999999999998754321 123589999999999999999999999 999999999999999555
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCc
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGL 928 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~ 928 (1009)
.+||+|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||.....
T Consensus 222 ~~kL~DFG~a~~~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~DvwslG~il~ellt~g~~pf~~~~~--- 292 (367)
T 3l9p_A 222 VAKIGDFGMARDIYRAGY------YRKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--- 292 (367)
T ss_dssp CEEECCCHHHHHHHHHSS------CTTCCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH---
T ss_pred eEEECCCccccccccccc------cccCCCcCCcccEECHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCH---
Confidence 599999999986543211 112223567999999999999999999999999999999998 9999874321
Q ss_pred cHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 929 TLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
.+......... ... ....+...+.+++.+||+.||++|||+.||++.|+.+.+..
T Consensus 293 --~~~~~~i~~~~--------~~~-----------~~~~~~~~l~~li~~~l~~dP~~Rps~~eil~~l~~~~~~~ 347 (367)
T 3l9p_A 293 --QEVLEFVTSGG--------RMD-----------PPKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 347 (367)
T ss_dssp --HHHHHHHHTTC--------CCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred --HHHHHHHHcCC--------CCC-----------CCccCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHhhCh
Confidence 11111111000 000 01123345789999999999999999999999999887754
No 81
>2y0a_A Death-associated protein kinase 1; transferase, calmodulin, esprit; HET: MES; 2.60A {Homo sapiens}
Probab=100.00 E-value=1e-38 Score=354.94 Aligned_cols=251 Identities=21% Similarity=0.291 Sum_probs=203.0
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc------chHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG------GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
++|.+.+.||+|+||.||+|.++.+|+.||||+++..... ..+.+.+|++++++++||||+++++++..
T Consensus 11 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----- 85 (326)
T 2y0a_A 11 DYYDTGEELGSGQFAVVKKCREKSTGLQYAAKFIKKRRTKSSRRGVSREDIEREVSILKEIQHPNVITLHEVYEN----- 85 (326)
T ss_dssp HHEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEBCCSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred cceEeceEEeeCCCeEEEEEEECCCCcEEEEEEEEccccccccchhhHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----
Confidence 5789999999999999999999989999999999754321 34679999999999999999999999754
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC----c
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM----V 850 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~----~ 850 (1009)
....++||||+++|+|.+++.... .+++.+++.++.|++.||.|||+. +|+||||||+||+++.++ .
T Consensus 86 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~ 156 (326)
T 2y0a_A 86 KTDVILILELVAGGELFDFLAEKE------SLTEEEATEFLKQILNGVYYLHSL---QIAHFDLKPENIMLLDRNVPKPR 156 (326)
T ss_dssp SSEEEEEEECCCSCBHHHHHTTSS------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCSSSSSCC
T ss_pred CCEEEEEEEcCCCCCHHHHHHhcC------CcCHHHHHHHHHHHHHHHHHHHHC---CeEcCCCCHHHEEEecCCCCCCC
Confidence 367899999999999999997654 389999999999999999999999 999999999999999887 8
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccH
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTL 930 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~ 930 (1009)
+||+|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||.....
T Consensus 157 ~kl~Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~----- 222 (326)
T 2y0a_A 157 IKIIDFGLAHKIDFGN---------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK----- 222 (326)
T ss_dssp EEECCCTTCEECCTTS---------CCCCCCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH-----
T ss_pred EEEEECCCCeECCCCC---------ccccccCCcCcCCceeecCCCCCcHHHHHHHHHHHHHHHHCcCCCCCCCH-----
Confidence 9999999998765321 12235689999999999999999999999999999999999999964321
Q ss_pred HHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 931 HEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 931 ~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.+..... ........... .......+.+++.+|++.||++|||+.|+++
T Consensus 223 ~~~~~~~--------~~~~~~~~~~~--------~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 271 (326)
T 2y0a_A 223 QETLANV--------SAVNYEFEDEY--------FSNTSALAKDFIRRLLVKDPKKRMTIQDSLQ 271 (326)
T ss_dssp HHHHHHH--------HHTCCCCCHHH--------HTTSCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HHHHHHH--------HhcCCCcCccc--------cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 1111110 00000000000 0012345779999999999999999999986
No 82
>1k9a_A Carboxyl-terminal SRC kinase; COOH-terminal SRC kinase, CSK, SFK, signal transduction, SH2, SH3, SRC homology, tyrosine kinase; 2.50A {Rattus norvegicus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1jeg_A
Probab=100.00 E-value=6.1e-39 Score=372.62 Aligned_cols=254 Identities=31% Similarity=0.414 Sum_probs=207.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|.+. ++.||||+++... ..+.+.+|+++|++++||||+++++++... ....+
T Consensus 192 ~~~~~~~~~lG~G~fg~V~~~~~~--~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~~----~~~~~ 263 (450)
T 1k9a_A 192 MKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKNDA--TAQAFLAEASVMTQLRHSNLVQLLGVIVEE----KGGLY 263 (450)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEET--TEEEEEEEESSCT--TSHHHHHHHHHHHTCCCTTBCCEEEEEECT----TSCEE
T ss_pred hHHeEEEeeecCcCCeeEEEEEec--CCeEEEEEeCCch--HHHHHHHHHHHHHhccCCCEEEEEEEEEcC----CCceE
Confidence 467888999999999999999885 8899999996443 467899999999999999999999997542 24689
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++|+|.++++.... ..+++..++.++.|++.||+|||++ +|+||||||+|||++.++.+||+|||++
T Consensus 264 iv~e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~a 336 (450)
T 1k9a_A 264 IVTEYMAKGSLVDYLRSRGR----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLT 336 (450)
T ss_dssp EEEECCTTCBHHHHHHHHCT----TTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTSCEEECCCTTC
T ss_pred EEEEecCCCcHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEECCCCCEEEeeCCCc
Confidence 99999999999999987643 2378999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhc
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
+..... .....+++.|+|||++.+..++.++|||||||++|||+| |+.||....... ........
T Consensus 337 ~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~~--~~~~i~~~- 402 (450)
T 1k9a_A 337 KEASST-----------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLKD--VVPRVEKG- 402 (450)
T ss_dssp EECC-----------------CCCTTTSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTTCCSSTTSCTTT--HHHHHHTT-
T ss_pred cccccc-----------ccCCCCCcceeCHHHhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHHH--HHHHHHcC-
Confidence 854321 112356889999999999999999999999999999999 999997543321 11111110
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
.... .+..++.++.+++.+||+.||++|||+.|+++.|+.+...
T Consensus 403 ----------~~~~-----------~p~~~~~~l~~li~~cl~~dp~~Rpt~~~l~~~L~~i~~~ 446 (450)
T 1k9a_A 403 ----------YKMD-----------APDGCPPAVYDVMKNCWHLDAATRPTFLQLREQLEHIRTH 446 (450)
T ss_dssp ----------CCCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHT
T ss_pred ----------CCCC-----------CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHh
Confidence 0000 1113445788999999999999999999999999998764
No 83
>3g33_A Cell division protein kinase 4; Ser/Thr protein kinase, cell cycle, phosphorylation, ATP-BIN cell division, disease mutation, kinase; 3.00A {Homo sapiens}
Probab=100.00 E-value=5.1e-39 Score=354.95 Aligned_cols=277 Identities=22% Similarity=0.288 Sum_probs=205.4
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-----cchHHHHHHHHHHHhcC---CCCcceEEeeeecc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-----GGSKSFAAECEALRSIR---HRNLIKIVTICSSI 770 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-----~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 770 (1009)
..++|++.+.||+|+||+||+|++..+++.||||+++.... .....+.+|++++++++ ||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~niv~~~~~~~~~ 86 (308)
T 3g33_A 7 ATSRYEPVAEIGVGAYGTVYKARDPHSGHFVALKSVRVPNGGGGGGGLPISTVREVALLRRLEAFEHPNVVRLMDVCATS 86 (308)
T ss_dssp ---CCEEEEEECCSSSCCEEEEECTTTCCEEEEEEEEEECCCTTSSCCCHHHHHHHHHHHHHHHHCCTTBCCEEEEEEEC
T ss_pred cccceEEEEEEecCCCeEEEEEEECCCCcEEEEEEEecccccccccccchhHHHHHHHHHHHhhcCCCCeEEeeeeeecc
Confidence 35689999999999999999999988999999999964432 12357788888888775 99999999998765
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV 850 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~ 850 (1009)
........++||||+. |+|.+++...... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 87 ~~~~~~~~~lv~e~~~-~~L~~~~~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~ 158 (308)
T 3g33_A 87 RTDREIKVTLVFEHVD-QDLRTYLDKAPPP----GLPAETIKDLMRQFLRGLDFLHAN---CIVHRDLKPENILVTSGGT 158 (308)
T ss_dssp CSSSEEEEEEEEECCC-CBHHHHHHTCCTT----CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCTTTEEECTTSC
T ss_pred CCCCceeEEEEehhhh-cCHHHHHhhccCC----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCC
Confidence 3333446899999996 6999999876532 389999999999999999999999 9999999999999999999
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccH
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTL 930 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~ 930 (1009)
+||+|||+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ..
T Consensus 159 ~kl~Dfg~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~ 228 (308)
T 3g33_A 159 VKLADFGLARIYSYQ---------MALTPVVVTLWYRAPEVLLQSTYATPVDMWSVGCIFAEMFRRKPLFCGNSEAD-QL 228 (308)
T ss_dssp EEECSCSCTTTSTTC---------CCSGGGGCCCSSCCHHHHHTSCCCSTHHHHHHHHHHHHTTTSSCSCCCSSHHH-HH
T ss_pred EEEeeCccccccCCC---------cccCCccccccccCchHHcCCCCCchHHHHHHHHHHHHHHhCCCCCCCCCHHH-HH
Confidence 999999999865432 22234678999999999999999999999999999999999999997533221 11
Q ss_pred HHHHHHhccchhhhccCCCCCChhhhhhhcc-----ccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 931 HEFAKRALPEKVMEIVDPSLLPLEEERTNSR-----RVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 931 ~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~-----~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
..............+. .... .+....... .....+...++.+++.+|++.||++|||+.|+++
T Consensus 229 ~~i~~~~~~~~~~~~~-~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 296 (308)
T 3g33_A 229 GKIFDLIGLPPEDDWP-RDVS-LPRGAFPPRGPRPVQSVVPEMEESGAQLLLEMLTFNPHKRISAFRALQ 296 (308)
T ss_dssp HHHHHHHCCCCTTTSC-SSCS-SCGGGSCCCCCCCHHHHSCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHHHHhCCCChhhcc-chhh-ccccccCCCCCCcHHHhCccccHHHHHHHHHHhcCCCccCCCHHHHhc
Confidence 1111111100000000 0000 000000000 0001123356789999999999999999999975
No 84
>3sxs_A Cytoplasmic tyrosine-protein kinase BMX; transferase-transferase inhibitor complex; HET: PP2; 1.89A {Homo sapiens} SCOP: d.144.1.7 PDB: 3sxr_A*
Probab=100.00 E-value=3.1e-39 Score=349.07 Aligned_cols=258 Identities=26% Similarity=0.407 Sum_probs=208.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|.++ ++..||||+++... ...+.+.+|++++++++||||+++++++.. ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 79 (268)
T 3sxs_A 7 REEITLLKELGSGQFGVVKLGKWK-GQYDVAVKMIKEGS-MSEDEFFQEAQTMMKLSHPKLVKFYGVCSK-----EYPIY 79 (268)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECBTT-BCHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSSEE
T ss_pred hhheeeeeeeccCCCceEEEEEec-CceeEEEEEeccCC-CcHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----CCceE
Confidence 468999999999999999999886 67889999996443 245779999999999999999999999754 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++++|.+++..... .+++.+++.++.|++.|++|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 80 lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg~~ 151 (268)
T 3sxs_A 80 IVTEYISNGCLLNYLRSHGK-----GLEPSQLLEMCYDVCEGMAFLESH---QFIHRDLAARNCLVDRDLCVKVSDFGMT 151 (268)
T ss_dssp EEEECCTTCBHHHHHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCSGGGEEECTTCCEEECCTTCE
T ss_pred EEEEccCCCcHHHHHHHcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCcCcceEEECCCCCEEEccCccc
Confidence 99999999999999987643 389999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhc
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
+....... ....+..+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... ......
T Consensus 152 ~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~-----~~~~~~- 218 (268)
T 3sxs_A 152 RYVLDDQY-------VSSVGTKFPVKWSAPEVFHYFKYSSKSDVWAFGILMWEVFSLGKMPYDLYTNS-----EVVLKV- 218 (268)
T ss_dssp EECCTTCE-------EECCSCCCCGGGCCHHHHHHSEEETTHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHHH-
T ss_pred eecchhhh-------hcccCCCcCcccCCHHHHhccCCchhhhhHHHHHHHHHHHcCCCCCccccChH-----HHHHHH-
Confidence 87654321 12234556788999999999899999999999999999999 99998643221 111110
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
........+ ......+.+++.+|++.||++|||+.|+++.|+.++++
T Consensus 219 -------~~~~~~~~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (268)
T 3sxs_A 219 -------SQGHRLYRP-----------HLASDTIYQIMYSCWHELPEKRPTFQQLLSSIEPLREK 265 (268)
T ss_dssp -------HTTCCCCCC-----------TTSCHHHHHHHHHTTCSSGGGSCCHHHHHHHHGGGCC-
T ss_pred -------HcCCCCCCC-----------CcChHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhhc
Confidence 000000000 01223578999999999999999999999999987654
No 85
>1opk_A P150, C-ABL, proto-oncogene tyrosine-protein kinase ABL1; transferase; HET: MYR P16; 1.80A {Mus musculus} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1opl_A* 2fo0_A* 2abl_A
Probab=100.00 E-value=1.7e-39 Score=381.50 Aligned_cols=259 Identities=25% Similarity=0.435 Sum_probs=211.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|.++.++..||||+++... ...+.+.+|+++|++++||||++++++|... ...+
T Consensus 219 ~~~~~~~~~lG~G~fg~Vy~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~l~~~~~~~-----~~~~ 292 (495)
T 1opk_A 219 RTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTRE-----PPFY 292 (495)
T ss_dssp GGGEEEEEESGGGTTSSEEEEEEGGGTEEEEEEECCSSS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECSS-----SSCE
T ss_pred HHHceeeeEecCCCCeEEEEEEEcCCCeEEEEEEecCcc-cchHHHHHHHHHHHhcCCCCEeeEEEEEecC-----CcEE
Confidence 457888999999999999999999889999999996543 3467899999999999999999999997643 5679
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++|+|.++++.... ..+++..++.++.|++.||+|||++ +|+||||||+|||++.++.+||+|||++
T Consensus 293 lv~E~~~~g~L~~~l~~~~~----~~~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~a 365 (495)
T 1opk_A 293 IITEFMTYGNLLDYLRECNR----QEVSAVVLLYMATQISSAMEYLEKK---NFIHRNLAARNCLVGENHLVKVADFGLS 365 (495)
T ss_dssp EEEECCTTCBHHHHHHHSCT----TTSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECGGGCEEECCTTCE
T ss_pred EEEEccCCCCHHHHHHhcCc----CCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCChhhEEECCCCcEEEeecccc
Confidence 99999999999999986442 2489999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhc
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
+....... ....+..+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ...+....
T Consensus 366 ~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlG~~l~el~t~g~~p~~~~~~~--~~~~~~~~-- 434 (495)
T 1opk_A 366 RLMTGDTY-------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEK-- 434 (495)
T ss_dssp ECCTTCCE-------ECCTTCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHT--
T ss_pred eeccCCce-------eecCCCcCCcceeCHhHHhcCCCCcHHhHHhHHHHHHHHHhCCCCCCCCCCHH--HHHHHHHc--
Confidence 87653211 11223456889999999999999999999999999999999 99999754322 11111111
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQ 1002 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~ 1002 (1009)
.... ..+..++.++.+++.+||+.||++|||+.|+++.|+.+.+
T Consensus 435 ----------~~~~----------~~~~~~~~~l~~li~~cl~~dP~~RPs~~el~~~L~~~~~ 478 (495)
T 1opk_A 435 ----------DYRM----------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQ 478 (495)
T ss_dssp ----------TCCC----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSCS
T ss_pred ----------CCCC----------CCCCCCCHHHHHHHHHHcCcChhHCcCHHHHHHHHHHHHh
Confidence 1000 0111344568899999999999999999999999987643
No 86
>4aw2_A Serine/threonine-protein kinase MRCK alpha; transferase, CDC42BPA; HET: 22E; 1.70A {Rattus norvegicus} PDB: 3tku_A* 3qfv_A*
Probab=100.00 E-value=1.8e-39 Score=372.58 Aligned_cols=262 Identities=20% Similarity=0.228 Sum_probs=205.3
Q ss_pred HHHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeecc
Q 047768 694 KELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSI 770 (1009)
Q Consensus 694 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 770 (1009)
.++....++|.+.++||+|+||+||+|+++.+++.||||+++... ......+.+|+.++..++||||+++++++..
T Consensus 67 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~- 145 (437)
T 4aw2_A 67 KQMRLHREDFEILKVIGRGAFGEVAVVKLKNADKVFAMKILNKWEMLKRAETACFREERDVLVNGDSKWITTLHYAFQD- 145 (437)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTTTCCHHHHHHHHHHSCTTTBCCEEEEEEC-
T ss_pred hcccCChhheEEEEEEEeCCCEEEEEEEEcCCCcEEEEEEEEHHHhhhHHHHHHHHHHHHHHHhCCCCCEEEEEEEEee-
Confidence 344455689999999999999999999999899999999996432 2233458899999999999999999998764
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV 850 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~ 850 (1009)
....++||||+++|+|.+++..... .+++..++.++.|++.||+|||+. +||||||||+|||++.++.
T Consensus 146 ----~~~~~lV~Ey~~gg~L~~~l~~~~~-----~l~e~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILl~~~g~ 213 (437)
T 4aw2_A 146 ----DNNLYLVMDYYVGGDLLTLLSKFED-----RLPEEMARFYLAEMVIAIDSVHQL---HYVHRDIKPDNILMDMNGH 213 (437)
T ss_dssp ----SSEEEEEECCCTTCBHHHHHHTTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred ----CCEEEEEEecCCCCcHHHHHHHccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeEecccCHHHeeEcCCCC
Confidence 3778999999999999999987433 389999999999999999999999 9999999999999999999
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccC-----CCCCCCcccchHHHHHHHHHHhCCCCCccccc
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL-----GGEASMRGGVYSYGILLLEIFTRRRPTESMFN 925 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~ 925 (1009)
+||+|||+|+....... ......+||+.|+|||++. ...++.++|||||||++|||++|+.||....
T Consensus 214 vkL~DFGla~~~~~~~~-------~~~~~~~GT~~Y~APE~l~~~~~~~~~~~~~~DvwSlGvil~elltG~~Pf~~~~- 285 (437)
T 4aw2_A 214 IRLADFGSCLKLMEDGT-------VQSSVAVGTPDYISPEILQAMEGGKGRYGPECDWWSLGVCMYEMLYGETPFYAES- 285 (437)
T ss_dssp EEECCCTTCEECCTTSC-------EECCSCCSCGGGCCHHHHHHHHTSCCEECTHHHHHHHHHHHHHHHHSSCTTCCSS-
T ss_pred EEEcchhhhhhcccCCC-------cccccccCCcCeeChHHHhhcccCCCCCCCcCeeHHHHHHHHHHHhCCCCCCCCC-
Confidence 99999999986643211 1223467999999999987 5678999999999999999999999997432
Q ss_pred CCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 047768 926 EGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFD--RMEMTDVVV 995 (1009)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~--Rpt~~evl~ 995 (1009)
..+...........-.+.... .....++.+++.+|++.+|++ ||+++|+++
T Consensus 286 ----~~~~~~~i~~~~~~~~~p~~~---------------~~~s~~~~dLi~~lL~~~~~r~~r~~~~eil~ 338 (437)
T 4aw2_A 286 ----LVETYGKIMNHKERFQFPTQV---------------TDVSENAKDLIRRLICSREHRLGQNGIEDFKK 338 (437)
T ss_dssp ----HHHHHHHHHTHHHHCCCCSSC---------------CCSCHHHHHHHHTTSSCGGGCTTTTTTHHHHT
T ss_pred ----hhHHHHhhhhccccccCCccc---------------ccCCHHHHHHHHHHhcccccccCCCCHHHHhC
Confidence 111111111100000000000 012234678999999888888 999999875
No 87
>3soa_A Calcium/calmodulin-dependent protein kinase type alpha with A beta 7 linker; phosphorylation, cytosolic, transferase-transferase inhibitor complex; HET: DB8; 3.55A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=366.46 Aligned_cols=253 Identities=21% Similarity=0.301 Sum_probs=202.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|.++.+|+.||+|++..... ...+.+.+|++++++++||||+++++++.. ...
T Consensus 10 ~~~Y~i~~~LG~G~fg~V~~~~~~~~~~~~a~K~i~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~-----~~~ 84 (444)
T 3soa_A 10 TEEYQLFEELGKGAFSVVRRCVKVLAGQEYAAMIINTKKLSARDHQKLEREARICRLLKHPNIVRLHDSISE-----EGH 84 (444)
T ss_dssp HHHEEEEEEEEEC--CEEEEEEETTTTEEEEEEEEESCSCHHHHHHHHHHHHHHHHHCCBTTBCCEEEEEEC-----SSE
T ss_pred cCCeEEEEEeccCCCeEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCcCCCeEEEEEEE-----CCE
Confidence 4689999999999999999999999999999999965432 234578899999999999999999998754 378
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC---CCCceEEe
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD---HDMVAHVS 854 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~---~~~~~kl~ 854 (1009)
.++||||+++|+|.+++..... +++.++..++.|++.||.|||++ +|+||||||+||+++ .++.+||+
T Consensus 85 ~~lv~E~~~gg~L~~~i~~~~~------~~e~~~~~i~~qil~aL~~lH~~---givHrDlKp~NIll~~~~~~~~vkL~ 155 (444)
T 3soa_A 85 HYLIFDLVTGGELFEDIVAREY------YSEADASHCIQQILEAVLHCHQM---GVVHRNLKPENLLLASKLKGAAVKLA 155 (444)
T ss_dssp EEEEECCCBCCBHHHHHHHCSC------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSSTTEEESBSSTTCCEEEC
T ss_pred EEEEEEeCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEeccCCCCcEEEc
Confidence 8999999999999999987653 89999999999999999999999 999999999999998 56889999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....
T Consensus 156 DFG~a~~~~~~~--------~~~~~~~gt~~Y~APE~l~~~~~~~~~DIwSlGvilyell~G~~Pf~~~~~-----~~~~ 222 (444)
T 3soa_A 156 DFGLAIEVEGEQ--------QAWFGFAGTPGYLSPEVLRKDPYGKPVDLWACGVILYILLVGYPPFWDEDQ-----HRLY 222 (444)
T ss_dssp CCSSCBCCCTTC--------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----HHHH
T ss_pred cCceeEEecCCC--------ceeecccCCcccCCHHHhcCCCCCCccccHHHHHHHHHHHhCCCCCCCccH-----HHHH
Confidence 999998665321 222346799999999999999999999999999999999999999964321 1111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.... ....+...+.+ .....++.+++.+|++.||++|||+.|+++
T Consensus 223 ~~i~-~~~~~~~~~~~---------------~~~s~~~~~li~~~L~~dP~~Rpta~e~L~ 267 (444)
T 3soa_A 223 QQIK-AGAYDFPSPEW---------------DTVTPEAKDLINKMLTINPSKRITAAEALK 267 (444)
T ss_dssp HHHH-HTCCCCCTTTT---------------TTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred HHHH-hCCCCCCcccc---------------ccCCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 1110 00001111111 012345779999999999999999999986
No 88
>4f0f_A Serine/threonine-protein kinase ROCO4; LRRK2, ATP-binding, nucleotide serine/threonine-protein kinase, transferase, signaling Pro; HET: ACP; 1.80A {Dictyostelium discoideum} PDB: 4f0g_A 4f1t_A* 4f1m_A* 4f1o_A*
Probab=100.00 E-value=8.4e-39 Score=349.45 Aligned_cols=253 Identities=26% Similarity=0.440 Sum_probs=202.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccc-------hHHHHHHHHHHHhcCCCCcceEEeeeecccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGG-------SKSFAAECEALRSIRHRNLIKIVTICSSIDF 772 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-------~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 772 (1009)
.++|.+.+.||+|+||+||+|++..+++.||||++....... .+.+.+|++++++++||||+++++++...
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-- 95 (287)
T 4f0f_A 18 DNEIEYEKQIGKGGFGLVHKGRLVKDKSVVAIKSLILGDSEGETEMIEKFQEFQREVFIMSNLNHPNIVKLYGLMHNP-- 95 (287)
T ss_dssp STTEEEEEECCCCSSSCEEEEEETTTCCEEEEEECCCCTTTCCHHHHCCSHHHHHHHHHHTTCCCTTBCCEEEEETTT--
T ss_pred hccceehhccccCCceeEEEEEEcCCceEEEEEEeeccccccchhHHHHHHHHHHHHHHHHhCCCCCchhhheeecCC--
Confidence 468999999999999999999999899999999986443222 16789999999999999999999987532
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceecCCCCCceeeCCCCc
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPP--IVHGDLKPSNVLLDHDMV 850 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~--ivHrdlk~~Nill~~~~~ 850 (1009)
.++||||+++|+|.+++..... .+++..++.++.|++.|++|||++ + |+||||||+||+++.++.
T Consensus 96 -----~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~l~~~l~~lH~~---~~~ivH~dikp~Nil~~~~~~ 162 (287)
T 4f0f_A 96 -----PRMVMEFVPCGDLYHRLLDKAH-----PIKWSVKLRLMLDIALGIEYMQNQ---NPPIVHRDLRSPNIFLQSLDE 162 (287)
T ss_dssp -----TEEEEECCTTCBHHHHHHCTTS-----CCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCSCCSGGGEEESCCCT
T ss_pred -----CeEEEEecCCCCHHHHHhcccC-----CccHHHHHHHHHHHHHHHHHHHhC---CCCeecCCCCcceEEEeccCC
Confidence 2699999999999999876554 389999999999999999999998 7 999999999999988776
Q ss_pred -----eEEeccccccccCCCCCCCccccCCccccccccccccCcccc--CCCCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 851 -----AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYG--LGGEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 851 -----~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~--~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
+||+|||+++.... ......||+.|+|||++ ....++.++||||+||++|||++|+.||...
T Consensus 163 ~~~~~~kl~Dfg~~~~~~~-----------~~~~~~g~~~y~aPE~~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~ 231 (287)
T 4f0f_A 163 NAPVCAKVADFGLSQQSVH-----------SVSGLLGNFQWMAPETIGAEEESYTEKADTYSFAMILYTILTGEGPFDEY 231 (287)
T ss_dssp TCSCCEEECCCTTCBCCSS-----------CEECCCCCCTTSCGGGSSCSSCEECHHHHHHHHHHHHHHHHHSSCTTTTC
T ss_pred CCceeEEeCCCCccccccc-----------cccccCCCccccCchhhccCCCCcCchhhHHHHHHHHHHHHcCCCCCccc
Confidence 99999999974432 22345789999999998 4556789999999999999999999999754
Q ss_pred ccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 047768 924 FNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCH 999 (1009)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~ 999 (1009)
............. ... .+. ....+..++.+++.+||+.||++|||+.|+++.|++
T Consensus 232 ~~~~~~~~~~~~~---~~~----~~~--------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ 286 (287)
T 4f0f_A 232 SYGKIKFINMIRE---EGL----RPT--------------IPEDCPPRLRNVIELCWSGDPKKRPHFSYIVKELSE 286 (287)
T ss_dssp CCCHHHHHHHHHH---SCC----CCC--------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHT
T ss_pred cccHHHHHHHHhc---cCC----CCC--------------CCcccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHh
Confidence 3332111111110 000 000 011233468899999999999999999999999875
No 89
>2eva_A TAK1 kinase - TAB1 chimera fusion protein; transferase/transferase activator complex; HET: ADN; 2.00A {Homo sapiens}
Probab=100.00 E-value=1.3e-38 Score=351.01 Aligned_cols=260 Identities=28% Similarity=0.428 Sum_probs=201.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|++. ++.||||+++.. ...+.+.+|++++++++||||+++++++. +..+
T Consensus 7 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~--~~~~~~~~E~~~l~~l~hp~iv~~~~~~~-------~~~~ 75 (307)
T 2eva_A 7 YKEIEVEEVVGRGAFGVVCKAKWR--AKDVAIKQIESE--SERKAFIVELRQLSRVNHPNIVKLYGACL-------NPVC 75 (307)
T ss_dssp GGGEEEEEEEECCSSSEEEEEEET--TEEEEEEECSST--THHHHHHHHHHHHHHCCCTTBCCEEEBCT-------TTTE
T ss_pred HhHeeeeeEeecCCCceEEEEEEC--CeeEEEEEecCh--hHHHHHHHHHHHHhcCCCCCcCeEEEEEc-------CCcE
Confidence 357889999999999999999884 889999998532 33578999999999999999999999864 2368
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc-eEEecccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV-AHVSDFGL 858 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~-~kl~DfGl 858 (1009)
+||||+++|+|.+++..... ...+++..++.++.|+++||+|||+.+..+|+||||||+||+++.++. +||+|||+
T Consensus 76 lv~e~~~~~~L~~~l~~~~~---~~~~~~~~~~~~~~qi~~~l~~LH~~~~~~ivH~dlkp~NIll~~~~~~~kl~Dfg~ 152 (307)
T 2eva_A 76 LVMEYAEGGSLYNVLHGAEP---LPYYTAAHAMSWCLQCSQGVAYLHSMQPKALIHRDLKPPNLLLVAGGTVLKICDFGT 152 (307)
T ss_dssp EEEECCTTCBHHHHHHCSSS---EECCCHHHHHHHHHHHHHHHHHHHTCSSSCCCCCCCSGGGEEEETTTTEEEECCCCC
T ss_pred EEEEcCCCCCHHHHHhccCC---CCccCHHHHHHHHHHHHHHHHHHHhCCCCCeecCCCChhHEEEeCCCCEEEEccccc
Confidence 99999999999999986543 124789999999999999999999932229999999999999998886 79999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhc
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
++..... .....||+.|+|||++.+..++.++||||||+++|||++|+.||.................
T Consensus 153 ~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~~~- 220 (307)
T 2eva_A 153 ACDIQTH-----------MTNNKGSAAWMAPEVFEGSNYSEKCDVFSWGIILWEVITRRKPFDEIGGPAFRIMWAVHNG- 220 (307)
T ss_dssp -----------------------CCTTSSCHHHHTCCCCCTHHHHHHHHHHHHHHHHTCCTTTTTCSSHHHHHHHHHTT-
T ss_pred ccccccc-----------cccCCCCCceEChhhhCCCCCCcHHHHHHHHHHHHHHHHCCCCchhhCccHHHHHHHHhcC-
Confidence 9755321 1224589999999999999999999999999999999999999975432211111111000
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
.... ....++..+.+++.+|++.||++|||++|+++.|+.+.+.+..
T Consensus 221 ----------~~~~-----------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~~~ 267 (307)
T 2eva_A 221 ----------TRPP-----------LIKNLPKPIESLMTRCWSKDPSQRPSMEEIVKIMTHLMRYFPG 267 (307)
T ss_dssp ----------CCCC-----------CBTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHGGGCCC
T ss_pred ----------CCCC-----------cccccCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHhccC
Confidence 0000 0012234578999999999999999999999999999887754
No 90
>3vhe_A Vascular endothelial growth factor receptor 2; kinase domain, kinase, transferase-transferase inhibitor COM; HET: 42Q; 1.55A {Homo sapiens} PDB: 1y6a_A* 1y6b_A* 3vhk_A* 3vid_A* 3hng_A*
Probab=100.00 E-value=3.9e-39 Score=364.28 Aligned_cols=278 Identities=21% Similarity=0.311 Sum_probs=216.0
Q ss_pred cCHHHHHHHhccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeecccc-cchHHHHHHHHHHHhc-CCCCcceE
Q 047768 691 VSYKELSKATNEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQK-GGSKSFAAECEALRSI-RHRNLIKI 763 (1009)
Q Consensus 691 ~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l 763 (1009)
+...++....++|.+.+.||+|+||.||+|++. .+++.||||+++.... ...+.+.+|+++++++ +||||+++
T Consensus 12 ~~~~~~~~~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpniv~~ 91 (359)
T 3vhe_A 12 YDASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNL 91 (359)
T ss_dssp CCHHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCE
T ss_pred CCcccccccccceeeceeecCCCCceEEEEEeccccccccceEEEEEEecCcCCHHHHHHHHHHHHHHHhhcCCcceeee
Confidence 344555666789999999999999999999953 4568999999965432 2245789999999999 79999999
Q ss_pred EeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCC------------------------------------------
Q 047768 764 VTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQL------------------------------------------ 801 (1009)
Q Consensus 764 ~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------------------------------ 801 (1009)
++++... ....++||||+++|+|.++++......
T Consensus 92 ~~~~~~~----~~~~~iv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (359)
T 3vhe_A 92 LGACTKP----GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKTKGARFRQGKDYVGAIPVDLKRRLDSITSSQSSASSGF 167 (359)
T ss_dssp EEEECST----TSCCEEEEECCTTEEHHHHHHTTTTSBCSCC--------------------------------------
T ss_pred eeeeecC----CCceEEEEEecCCCcHHHHHHhccccccccccccchhhcccccccccchhhhccccccCcccccccccc
Confidence 9997542 345789999999999999998754310
Q ss_pred ------------------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccccccC
Q 047768 802 ------------------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFLS 863 (1009)
Q Consensus 802 ------------------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~~ 863 (1009)
....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++...
T Consensus 168 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ql~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~Dfg~a~~~~ 244 (359)
T 3vhe_A 168 VEEKSLSDVEEEEAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIHRDLAARNILLSEKNVVKICDFGLARDIY 244 (359)
T ss_dssp ----------------CTTTTCBCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCGGGSCTT
T ss_pred ccccccchhhhcccccchhccccCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChhhEEEcCCCcEEEEeccceeeec
Confidence 011288999999999999999999999 99999999999999999999999999998764
Q ss_pred CCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhccchh
Q 047768 864 ASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRALPEKV 942 (1009)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~ 942 (1009)
.... ........||+.|+|||++.+..++.++|||||||++|||+| |+.||........ ...........
T Consensus 245 ~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~~~-~~~~~~~~~~~-- 315 (359)
T 3vhe_A 245 KDPD------YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFSLGASPYPGVKIDEE-FCRRLKEGTRM-- 315 (359)
T ss_dssp SCTT------CEEC--CEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCSSTTCCCSHH-HHHHHHHTCCC--
T ss_pred cccc------chhccccCCCceeEChhhhcCCCCCchhhhhhHHHHHHHHHhcCCCCCCccchhHH-HHHHHHcCCCC--
Confidence 4321 112234568999999999999999999999999999999999 9999975432211 11111110000
Q ss_pred hhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 943 MEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 943 ~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
.. ...+..++.+++.+|++.||++|||++|+++.|+++.+..
T Consensus 316 ---------~~-----------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~ 357 (359)
T 3vhe_A 316 ---------RA-----------PDYTTPEMYQTMLDCWHGEPSQRPTFSELVEHLGNLLQAN 357 (359)
T ss_dssp ---------CC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred ---------CC-----------CCCCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHHHHh
Confidence 00 0112345789999999999999999999999999988753
No 91
>4hgt_A Casein kinase I isoform delta; CK1D, inhibitor, transferase-transferase inhibitor C; HET: 15G; 1.80A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 3uzp_A* 4hnf_A* 1cki_A 1ckj_A 4hni_A* 4hok_A
Probab=100.00 E-value=2.4e-38 Score=347.54 Aligned_cols=271 Identities=21% Similarity=0.275 Sum_probs=211.0
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
..++|.+.+.||+|+||+||+|++..+++.||||++..... ...+.+|+++++.++|++++..++++.. .....
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~e~~~l~~l~~~~~i~~~~~~~~----~~~~~ 80 (296)
T 4hgt_A 7 VGNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKTK--HPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYN 80 (296)
T ss_dssp ----CEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEC-----CCCHHHHHHHHHHHTTSTTCCCEEEEEE----ETTEE
T ss_pred cCCceEEeeeecCCCCeEEEEEEEcCCCceEEEEeeccccc--chHHHHHHHHHHHhcCCCCCCeeeeecC----CCCce
Confidence 34689999999999999999999988999999998754432 3468899999999999888888877643 24678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee---CCCCceEEec
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL---DHDMVAHVSD 855 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill---~~~~~~kl~D 855 (1009)
++||||+ +++|.+++..... .+++.+++.++.|++.||.|||++ +|+||||||+||++ +.++.+||+|
T Consensus 81 ~lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~~~~kL~D 151 (296)
T 4hgt_A 81 VMVMELL-GPSLEDLFNFCSR-----KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIID 151 (296)
T ss_dssp EEEEECC-CCBHHHHHHHTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECCGGGTTCEEECC
T ss_pred EEEEEcc-CCCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeeeeccCCCCeEEEec
Confidence 9999999 9999999986543 389999999999999999999999 99999999999999 7899999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCC--ccHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEG--LTLHEF 933 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~--~~~~~~ 933 (1009)
||+++............ ........||+.|+|||++.+..++.++|||||||++|||++|+.||....... ......
T Consensus 152 fg~a~~~~~~~~~~~~~-~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~ 230 (296)
T 4hgt_A 152 FGLAKKYRDARTHQHIP-YRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERI 230 (296)
T ss_dssp CTTCEECBCTTTCCBCC-CCCSCCCCSCGGGCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHH
T ss_pred CccceeccCcccCccCC-CCcccccCCCccccchHHhcCCCCCchhHHHHHHHHHHHHhcCCCCCcccchhhhhhhhhhh
Confidence 99998776543211111 122334679999999999999999999999999999999999999998644321 112222
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
.....+...... ...++.++.+++.+|++.||++|||++|+++.|+++.++.
T Consensus 231 ~~~~~~~~~~~~-------------------~~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~~~~~~ 282 (296)
T 4hgt_A 231 SEKKMSTPIEVL-------------------CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQ 282 (296)
T ss_dssp HHHHHHSCHHHH-------------------TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHH
T ss_pred hcccccchhhhh-------------------hccCCHHHHHHHHHHHhcCCCCCCCHHHHHHHHHHHHHHh
Confidence 111111111000 0112356889999999999999999999999999988764
No 92
>3gen_A Tyrosine-protein kinase BTK; bruton'S tyrosine kinase, 4-amino-5-(4-phenoxyphenyl)-5H- pyrrolo[3, 2-D]pyrimidin-7-YL-cyclopentane, TEC-family; HET: B43; 1.60A {Homo sapiens} PDB: 3k54_A* 3pj2_A* 3piy_A* 3piz_A* 3pj1_A* 3pix_A* 3pj3_A* 3p08_A 3ocs_A* 3oct_A* 1k2p_A
Probab=100.00 E-value=7.2e-39 Score=349.23 Aligned_cols=259 Identities=24% Similarity=0.396 Sum_probs=206.8
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
..++|.+.+.||+|+||+||+|.+. ++..||||+++... ...+.+.+|++++++++||||+++++++.. ....
T Consensus 22 ~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~ 94 (283)
T 3gen_A 22 DPKDLTFLKELGTGQFGVVKYGKWR-GQYDVAIKMIKEGS-MSEDEFIEEAKVMMNLSHEKLVQLYGVCTK-----QRPI 94 (283)
T ss_dssp CGGGEEEEEECC---CEEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHHTCCCTTBCCEEEEECS-----SSSE
T ss_pred CHHHHHhHhhcCCCCCceEEEEEEc-CCCeEEEEEecCCC-CCHHHHHHHHHHHhcCCCCCEeeEEEEEec-----CCCe
Confidence 4568999999999999999999886 68889999997443 235779999999999999999999999754 3678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++++|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 95 ~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl~Dfg~ 166 (283)
T 3gen_A 95 FIITEYMANGCLLNYLREMRH-----RFQTQQLLEMCKDVCEAMEYLESK---QFLHRDLAARNCLVNDQGVVKVSDFGL 166 (283)
T ss_dssp EEEECCCTTCBHHHHHHCGGG-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTSCEEECSTTG
T ss_pred EEEEeccCCCcHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCccceEEEcCCCCEEEccccc
Confidence 999999999999999987543 389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++...... ........+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... ......
T Consensus 167 ~~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~~l~~l~t~g~~p~~~~~~~-----~~~~~~ 234 (283)
T 3gen_A 167 SRYVLDDE-------YTSSVGSKFPVRWSPPEVLMYSKFSSKSDIWAFGVLMWEIYSLGKMPYERFTNS-----ETAEHI 234 (283)
T ss_dssp GGGBCCHH-------HHSTTSTTSCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTTCCTTTTSCHH-----HHHHHH
T ss_pred cccccccc-------cccccCCccCcccCCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCccccChh-----HHHHHH
Confidence 98664321 112223457889999999999999999999999999999999 99999753221 111110
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
........+ ......+.+++.+||+.||++|||+.|+++.|+++.++
T Consensus 235 --------~~~~~~~~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~~~~~ 281 (283)
T 3gen_A 235 --------AQGLRLYRP-----------HLASEKVYTIMYSCWHEKADERPTFKILLSNILDVMDE 281 (283)
T ss_dssp --------HTTCCCCCC-----------TTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHH
T ss_pred --------hcccCCCCC-----------CcCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHhhc
Confidence 000000000 01124578999999999999999999999999998764
No 93
>4dc2_A Protein kinase C IOTA type; kinase, substrate, cell polarity, atypical PKC, trans transferase substrate complex; HET: TPO ADE; 2.40A {Mus musculus}
Probab=100.00 E-value=8.8e-39 Score=361.91 Aligned_cols=249 Identities=21% Similarity=0.280 Sum_probs=199.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc---cchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK---GGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||+||+|+++.+++.||||+++.... ...+.+.+|..+++++ +||||+++++++.. .
T Consensus 51 ~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AvK~~~k~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~-----~ 125 (396)
T 4dc2_A 51 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMRVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-----E 125 (396)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGTC----CCHHHHHHHHHHHHTTCTTBCCEEEEEEC-----S
T ss_pred hhHcEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhcCCCCCcCeeEEEEEE-----C
Confidence 4689999999999999999999999999999999975432 2345688999999887 89999999998654 3
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.+++..... +++..++.++.|++.||+|||++ +||||||||+|||++.++.+||+|
T Consensus 126 ~~~~lV~E~~~gg~L~~~l~~~~~------l~~~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ikL~D 196 (396)
T 4dc2_A 126 SRLFFVIEYVNGGDLMFHMQRQRK------LPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTD 196 (396)
T ss_dssp SEEEEEEECCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECC
T ss_pred CEEEEEEEcCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEECCCCCEEEee
Confidence 788999999999999999987653 89999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCC----ccHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEG----LTLH 931 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~----~~~~ 931 (1009)
||+|+..... .......+||+.|+|||++.+..++.++||||+||++|||++|+.||....... ....
T Consensus 197 FGla~~~~~~--------~~~~~~~~gt~~Y~aPE~l~~~~~~~~~DiwslGvllyell~G~~Pf~~~~~~~~~~~~~~~ 268 (396)
T 4dc2_A 197 YGMCKEGLRP--------GDTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTED 268 (396)
T ss_dssp CTTCBCCCCT--------TCCBCCCCBCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSTTTTC------CCHH
T ss_pred cceeeecccC--------CCccccccCCcccCCchhhcCCCCChHHHHHHHHHHHHHHHhCCCCCcccccccccchhhHH
Confidence 9999853321 122345689999999999999999999999999999999999999996432211 0111
Q ss_pred HHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCH
Q 047768 932 EFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEM 990 (1009)
Q Consensus 932 ~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~ 990 (1009)
...... ..... ..+ .....++.+++.+|++.||++||++
T Consensus 269 ~~~~~i--------~~~~~-~~p-----------~~~s~~~~~li~~lL~~dP~~R~~~ 307 (396)
T 4dc2_A 269 YLFQVI--------LEKQI-RIP-----------RSLSVKAASVLKSFLNKDPKERLGC 307 (396)
T ss_dssp HHHHHH--------HHCCC-CCC-----------TTSCHHHHHHHHHHTCSCTTTSTTC
T ss_pred HHHHHH--------hcccc-CCC-----------CcCCHHHHHHHHHHhcCCHhHcCCC
Confidence 111110 00000 000 0122357799999999999999996
No 94
>4fr4_A YANK1, serine/threonine-protein kinase 32A; structural genomics, structural genomics consortium, SGC, TR; HET: STU; 2.29A {Homo sapiens}
Probab=100.00 E-value=2.8e-38 Score=356.62 Aligned_cols=250 Identities=22% Similarity=0.320 Sum_probs=202.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|+++.+++.||||+++... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 14 ~~~y~i~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~-----~~ 88 (384)
T 4fr4_A 14 FDHFEILRAIGKGSFGKVCIVQKNDTKKMYAMKYMNKQKCVERNEVRNVFKELQIMQGLEHPFLVNLWYSFQD-----EE 88 (384)
T ss_dssp GGGEEEEEEEECCTTCCEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SS
T ss_pred hHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEehhhcccHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----CC
Confidence 367999999999999999999999999999999996432 3345678899999999999999999998754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+.+|+|.+++.... .+++..++.++.|++.||.|||+. +||||||||+||+++.++.+||+||
T Consensus 89 ~~~lv~e~~~gg~L~~~l~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~DF 159 (384)
T 4fr4_A 89 DMFMVVDLLLGGDLRYHLQQNV------HFKEETVKLFICELVMALDYLQNQ---RIIHRDMKPDNILLDEHGHVHITDF 159 (384)
T ss_dssp EEEEEECCCTTEEHHHHHHTTC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred EEEEEEecCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCcHHHeEECCCCCEEEecc
Confidence 7899999999999999998754 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCC---CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG---GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
|+++..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... .....
T Consensus 160 G~a~~~~~~---------~~~~~~~gt~~Y~aPE~~~~~~~~~~~~~~DiwSlG~il~elltG~~Pf~~~~~~--~~~~~ 228 (384)
T 4fr4_A 160 NIAAMLPRE---------TQITTMAGTKPYMAPEMFSSRKGAGYSFAVDWWSLGVTAYELLRGRRPYHIRSST--SSKEI 228 (384)
T ss_dssp TTCEECCTT---------CCBCCCCSCGGGCCGGGTCCCSSCCBCTTHHHHHHHHHHHHHHHSSCSSCCCTTS--CHHHH
T ss_pred ceeeeccCC---------CceeccCCCccccCCeeeccCCCCCCCccceeechHHHHHHHHhCCCCCCCCCCc--cHHHH
Confidence 999876432 22334679999999999864 45899999999999999999999999743222 12222
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCC-HHHHH
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRME-MTDVV 994 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt-~~evl 994 (1009)
...... .....+ ..+...+.+++.+|++.||++||+ ++++.
T Consensus 229 ~~~~~~---------~~~~~p-----------~~~s~~~~~li~~lL~~dP~~R~s~~~~l~ 270 (384)
T 4fr4_A 229 VHTFET---------TVVTYP-----------SAWSQEMVSLLKKLLEPNPDQRFSQLSDVQ 270 (384)
T ss_dssp HHHHHH---------CCCCCC-----------TTSCHHHHHHHHHHSCSSGGGSCCSHHHHH
T ss_pred HHHHhh---------cccCCC-----------CcCCHHHHHHHHHHhcCCHhHhcccHHHHH
Confidence 111100 000000 122345789999999999999998 66554
No 95
>1luf_A Muscle-specific tyrosine kinase receptor MUSK; phosphorylation, signal transduction, MASS spectrometry, transferase; 2.05A {Rattus norvegicus} SCOP: d.144.1.7
Probab=100.00 E-value=4.4e-39 Score=361.47 Aligned_cols=270 Identities=26% Similarity=0.401 Sum_probs=210.8
Q ss_pred HhccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeecccc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDF 772 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 772 (1009)
..++|.+.+.||+|+||.||+|++. .+++.||||+++.... ...+.+.+|++++++++||||+++++++..
T Consensus 45 ~~~~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--- 121 (343)
T 1luf_A 45 PRNNIEYVRDIGEGAFGRVFQARAPGLLPYEPFTMVAVKMLKEEASADMQADFQREAALMAEFDNPNIVKLLGVCAV--- 121 (343)
T ss_dssp CGGGCEEEEEEEECSSCEEEEEEEETSSTTSSEEEEEEEECCTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS---
T ss_pred cHHHCeeeeeeeecCCeeEEEEEecCcCCCCCceeEEEEEeccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEEcc---
Confidence 4578999999999999999999997 3458999999975432 224678999999999999999999999754
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCC------------------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCce
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQL------------------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIV 834 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~iv 834 (1009)
....++||||+++|+|.+++....... ....+++.+++.++.|++.||.|||++ +|+
T Consensus 122 --~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~~l~~LH~~---~iv 196 (343)
T 1luf_A 122 --GKPMCLLFEYMAYGDLNEFLRSMSPHTVCSLSHSDLSTRARVSSPGPPPLSCAEQLCIARQVAAGMAYLSER---KFV 196 (343)
T ss_dssp --SSSCEEEEECCTTCBHHHHHHHTCC----------------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCC
T ss_pred --CCceEEEEecCCCCcHHHHHHHhCcccccccccccccccccccccCCCCCCHHHHHHHHHHHHHHHHHHHhC---Cee
Confidence 367899999999999999998753210 013589999999999999999999999 999
Q ss_pred ecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHH
Q 047768 835 HGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIF 914 (1009)
Q Consensus 835 Hrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ell 914 (1009)
||||||+||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++||||||+++|||+
T Consensus 197 H~Dlkp~NIl~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 270 (343)
T 1luf_A 197 HRDLATRNCLVGENMVVKIADFGLSRNIYSADY------YKADGNDAIPIRWMPPESIFYNRYTTESDVWAYGVVLWEIF 270 (343)
T ss_dssp CSCCSGGGEEECGGGCEEECCCSCHHHHTGGGC------BC----CCBCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHH
T ss_pred cCCCCcceEEECCCCeEEEeecCCCcccccCcc------ccccCCCcccceecChhhhccCCcCcccccHHHHHHHHHHH
Confidence 999999999999999999999999987643211 11222356789999999999999999999999999999999
Q ss_pred h-CCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 047768 915 T-RRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDV 993 (1009)
Q Consensus 915 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~ev 993 (1009)
+ |+.||..... .+..... .+......+ ..++.++.+++.+||+.||++||++.|+
T Consensus 271 t~g~~p~~~~~~-----~~~~~~~--------~~~~~~~~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~~~ 326 (343)
T 1luf_A 271 SYGLQPYYGMAH-----EEVIYYV--------RDGNILACP-----------ENCPLELYNLMRLCWSKLPADRPSFCSI 326 (343)
T ss_dssp TTTCCTTTTSCH-----HHHHHHH--------HTTCCCCCC-----------TTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred hcCCCcCCCCCh-----HHHHHHH--------hCCCcCCCC-----------CCCCHHHHHHHHHHcccCcccCCCHHHH
Confidence 9 9999974321 1211111 111111111 1233468899999999999999999999
Q ss_pred HHHHHHHHHhhhc
Q 047768 994 VVKLCHARQNFLG 1006 (1009)
Q Consensus 994 l~~L~~i~~~~~~ 1006 (1009)
++.|+++.+.+..
T Consensus 327 ~~~L~~~~~~~~~ 339 (343)
T 1luf_A 327 HRILQRMCERAEG 339 (343)
T ss_dssp HHHHHHTTC----
T ss_pred HHHHHHHHhhhhh
Confidence 9999998887654
No 96
>3o0g_A Cell division protein kinase 5; kinase activator complex, kinase inhibitor complex, transferase-transferase activator complex; HET: 3O0; 1.95A {Homo sapiens} SCOP: d.144.1.7 PDB: 1unh_A* 1ung_A* 1unl_A* 1h4l_A
Probab=100.00 E-value=9.3e-39 Score=349.97 Aligned_cols=272 Identities=19% Similarity=0.277 Sum_probs=202.0
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
++|++.+.||+|+||+||+|+++.+++.||||+++..... ..+.+.+|++++++++||||+++++++... ...
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~ 76 (292)
T 3o0g_A 2 QKYEKLEKIGEGTYGTVFKAKNRETHEIVALKRVRLDDDDEGVPSSALREICLLKELKHKNIVRLHDVLHSD-----KKL 76 (292)
T ss_dssp CSEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEESSCSSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-----TEE
T ss_pred CCceeeeEecCCCCeEEEEEEECCCCceEEEEeeeccCCcCCcchHHHHHHHHHhcCCCCCEeeEEeEEEeC-----CEE
Confidence 5789999999999999999999999999999999755432 236788999999999999999999997643 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++ ++.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 77 ~lv~e~~~~-~l~~~~~~~~~-----~l~~~~~~~~~~ql~~~l~~lH~~---~ivH~dikp~Nil~~~~~~~kl~Dfg~ 147 (292)
T 3o0g_A 77 TLVFEFCDQ-DLKKYFDSCNG-----DLDPEIVKSFLFQLLKGLGFCHSR---NVLHRDLKPQNLLINRNGELKLANFGL 147 (292)
T ss_dssp EEEEECCSE-EHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEecCCC-CHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEeeccc
Confidence 999999975 67776665433 389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCC-CCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGE-ASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++...... .......||+.|+|||++.+.. ++.++||||+||++|||++|+.||.................
T Consensus 148 ~~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~~~~p~~~~~~~~~~~~~i~~~~ 219 (292)
T 3o0g_A 148 ARAFGIPV--------RCYSAEVVTLWYRPPDVLFGAKLYSTSIDMWSAGCIFAELANAGRPLFPGNDVDDQLKRIFRLL 219 (292)
T ss_dssp CEECCSCC--------SCCCSCCSCGGGCCHHHHTTCSCCCTHHHHHHHHHHHHHHTTTSCCSCCCSSHHHHHHHHHHHH
T ss_pred ceecCCcc--------ccccCCccccCCcChHHHcCCCCcCchHHHHHHHHHHHHHHHcCCCCcCCCCHHHHHHHHHHHh
Confidence 98764321 2223456899999999988766 79999999999999999999888653322222222222211
Q ss_pred ccch------hhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPEK------VMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~~------~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.... .....+..-...... .............++.+++.+|++.||++|||++|+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 282 (292)
T 3o0g_A 220 GTPTEEQWPSMTKLPDYKPYPMYPA-TTSLVNVVPKLNATGRDLLQNLLKCNPVQRISAEEALQ 282 (292)
T ss_dssp CCCCTTTCTTGGGSTTCCCCCCCCT-TCCCTTTSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCChhhhhhhcccccccccccccC-CcchhhcccccChHHHHHHHHHhccChhhCCCHHHHhc
Confidence 1100 000000000000000 00000011123346789999999999999999999975
No 97
>3uzp_A CKI-delta, CKID, casein kinase I isoform delta; CK1D, inhibitor, PF670462, transferase-transferase I complex; HET: 0CK; 1.94A {Homo sapiens} PDB: 3uys_A* 3uyt_A* 1cki_A 1ckj_A
Probab=100.00 E-value=2.9e-38 Score=346.82 Aligned_cols=271 Identities=20% Similarity=0.265 Sum_probs=214.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|++..+++.||||++.... ..+.+.+|++++++++|++++..+.++.. .....+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~e~~~l~~l~~~~~i~~~~~~~~----~~~~~~ 81 (296)
T 3uzp_A 8 GNRYRLGRKIGSGSFGDIYLGTDIAAGEEVAIKLECVKT--KHPQLHIESKIYKMMQGGVGIPTIRWCGA----EGDYNV 81 (296)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEEESCS--SCCHHHHHHHHHHHHTTSTTCCCEEEEEE----ETTEEE
T ss_pred ccEEEEEEEEccCCCeEEEEEEEcCCCcEEEEEEecCCc--chhHHHHHHHHHHHhhcCCCCCccccccC----CCCceE
Confidence 468999999999999999999998899999999986543 34578999999999999888887777643 236789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee---CCCCceEEecc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL---DHDMVAHVSDF 856 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill---~~~~~~kl~Df 856 (1009)
+||||+ +++|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||++ +.++.+||+||
T Consensus 82 lv~e~~-~~~L~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~~~~kl~Df 152 (296)
T 3uzp_A 82 MVMELL-GPSLEDLFNFCSR-----KFSLKTVLLLADQMISRIEYIHSK---NFIHRDVKPDNFLMGLGKKGNLVYIIDF 152 (296)
T ss_dssp EEEECC-CCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECCGGGTTCEEECCC
T ss_pred EEEEec-CCCHHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHeEEecCCCCCeEEEeeC
Confidence 999999 9999999985443 389999999999999999999999 99999999999999 48899999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCC--ccHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEG--LTLHEFA 934 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~--~~~~~~~ 934 (1009)
|+++........... .........||+.|+|||++.+..++.++|||||||++|||++|+.||....... .......
T Consensus 153 g~~~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~ 231 (296)
T 3uzp_A 153 GLAKKYRDARTHQHI-PYRENKNLTGTARYASINTHLGIEQSRRDDLESLGYVLMYFNLGSLPWQGLKAATKRQKYERIS 231 (296)
T ss_dssp TTCEECBCTTTCCBC-CCCCSCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSSSSHHHHHH
T ss_pred CCccccccccccccc-ccccccccccccccCChhhhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCcCchhhhhhhhhhc
Confidence 999877654321111 1112345679999999999999999999999999999999999999998643221 1222222
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
........... ...++.++.+++.+||+.||++|||++|+++.|+++.++..
T Consensus 232 ~~~~~~~~~~~-------------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~~~~~~ 283 (296)
T 3uzp_A 232 EKKMSTPIEVL-------------------CKGYPSEFATYLNFCRSLRFDDKPDYSYLRQLFRNLFHRQG 283 (296)
T ss_dssp HHHHHSCHHHH-------------------TTTSCHHHHHHHHHHHTSCTTCCCCHHHHHHHHHHHHHHTT
T ss_pred ccccCCchHHH-------------------HhhCCHHHHHHHHHHHhcCcCcCCCHHHHHHHHHHHHHhcC
Confidence 11111111000 01223568899999999999999999999999999887643
No 98
>3mdy_A Bone morphogenetic protein receptor type-1B; complex (isomerase-protein kinase), receptor serine/threonin structural genomics consortium, SGC; HET: LDN; 2.05A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.7e-38 Score=353.01 Aligned_cols=277 Identities=24% Similarity=0.346 Sum_probs=209.1
Q ss_pred HHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc--CCCCcceEEeeeeccccCCC
Q 047768 698 KATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI--RHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 698 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l--~h~niv~l~~~~~~~~~~~~ 775 (1009)
...++|.+.+.||+|+||.||+|++. ++.||||++.... ...+.+|.+++... +||||+++++++... ....
T Consensus 34 ~~~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~---~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~-~~~~ 107 (337)
T 3mdy_A 34 TIAKQIQMVKQIGKGRYGEVWMGKWR--GEKVAVKVFFTTE---EASWFRETEIYQTVLMRHENILGFIAADIKG-TGSW 107 (337)
T ss_dssp THHHHCEEEEEEEEETTEEEEEEEET--TEEEEEEEEEGGG---HHHHHHHHHHHTSTTCCCTTBCCEEEEEEES-CGGG
T ss_pred ccccceEEEeEeecCCCeEEEEEEEC--CceEEEEEEeccc---cchhhhHHHHHHHHhhcCCCeeeEEEEEccC-CCCC
Confidence 34578999999999999999999885 8999999985432 34555666666655 899999999997653 2223
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcC-----CCCceecCCCCCceeeCCCCc
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHC-----QPPIVHGDLKPSNVLLDHDMV 850 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~-----~~~ivHrdlk~~Nill~~~~~ 850 (1009)
...++||||+++|+|.++++... +++.+++.++.|++.||+|||+++ .++|+||||||+||+++.++.
T Consensus 108 ~~~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~~ivH~Dikp~Nill~~~~~ 180 (337)
T 3mdy_A 108 TQLYLITDYHENGSLYDYLKSTT-------LDAKSMLKLAYSSVSGLCHLHTEIFSTQGKPAIAHRDLKSKNILVKKNGT 180 (337)
T ss_dssp CEEEEEECCCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHSCBCSTTCBCCEECSCCCGGGEEECTTSC
T ss_pred CceEEEEeccCCCcHHHHhhccC-------CCHHHHHHHHHHHHHHHHHHHHhhhhhccCCCEEecccchHHEEECCCCC
Confidence 57899999999999999997643 899999999999999999999752 348999999999999999999
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCc------ccchHHHHHHHHHHhC--------
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMR------GGVYSYGILLLEIFTR-------- 916 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~------~DvwS~Gvvl~elltg-------- 916 (1009)
+||+|||+++......... ........||+.|+|||++.+...+.+ +|||||||++|||+||
T Consensus 181 ~kl~Dfg~a~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~tg~~~~~~~~ 256 (337)
T 3mdy_A 181 CCIADLGLAVKFISDTNEV----DIPPNTRVGTKRYMPPEVLDESLNRNHFQSYIMADMYSFGLILWEVARRCVSGGIVE 256 (337)
T ss_dssp EEECCCTTCEECC-------------CCSSCSCGGGCCHHHHTTCCCTTCTHHHHHHHHHHHHHHHHHHHTTBCBTTBCC
T ss_pred EEEEeCCCceeeccccccc----cCCCCCCccCcceeChhhcccccCCccccCccccchHHHHHHHHHHHhccCcccccc
Confidence 9999999998765432111 111224579999999999988777665 9999999999999999
Q ss_pred --CCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 047768 917 --RRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVV 994 (1009)
Q Consensus 917 --~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl 994 (1009)
+.||..................... ..+... ......++..++.+++.+||+.||++|||+.|++
T Consensus 257 ~~~~p~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~-----~~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell 323 (337)
T 3mdy_A 257 EYQLPYHDLVPSDPSYEDMREIVCIKK--------LRPSFP-----NRWSSDECLRQMGKLMTECWAHNPASRLTALRVK 323 (337)
T ss_dssp CCCCTTTTTSCSSCCHHHHHHHHTTSC--------CCCCCC-----GGGGGSHHHHHHHHHHHHHSCSSGGGSCCHHHHH
T ss_pred cccccHhhhcCCCCchhhhHHHHhhhc--------cCcccc-----ccchhhHHHHHHHHHHHHhhhhChhhCCCHHHHH
Confidence 5666544433333333322111111 111000 1122336778899999999999999999999999
Q ss_pred HHHHHHHHhh
Q 047768 995 VKLCHARQNF 1004 (1009)
Q Consensus 995 ~~L~~i~~~~ 1004 (1009)
+.|+++.+.-
T Consensus 324 ~~L~~l~~~~ 333 (337)
T 3mdy_A 324 KTLAKMSESQ 333 (337)
T ss_dssp HHHHHHHHTT
T ss_pred HHHHHHHhhc
Confidence 9999998764
No 99
>2pmi_A Negative RE, cyclin-dependent protein kinase PHO85; cyclin-dependent kinase, signaling protein,transfera cycle complex; HET: MES AGS; 2.90A {Saccharomyces cerevisiae} PDB: 2pk9_A*
Probab=100.00 E-value=2.2e-38 Score=351.08 Aligned_cols=278 Identities=21% Similarity=0.300 Sum_probs=192.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||+||+|.++.+|+.||||+++.... ...+.+.+|++++++++||||+++++++.. ....
T Consensus 4 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~ 78 (317)
T 2pmi_A 4 SSQFKQLEKLGNGTYATVYKGLNKTTGVYVALKEVKLDSEEGTPSTAIREISLMKELKHENIVRLYDVIHT-----ENKL 78 (317)
T ss_dssp ---------------CEEEEEECSSSCCEEEEEEEECCSTTCSCHHHHHHHHHHTTCCBTTBCCEEEEECC-----TTEE
T ss_pred ccceeEeeEECCCCCEEEEEEEECCCCcEEEEEEeecccccccHHHHHHHHHHHHhcCCCCcceEEEEEEE-----CCeE
Confidence 4689999999999999999999998999999999975433 234678899999999999999999999654 3678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||++ |+|.+++...........+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 79 ~lv~e~~~-~~L~~~l~~~~~~~~~~~~~~~~~~~~~~qi~~aL~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Dfg~ 154 (317)
T 2pmi_A 79 TLVFEFMD-NDLKKYMDSRTVGNTPRGLELNLVKYFQWQLLQGLAFCHEN---KILHRDLKPQNLLINKRGQLKLGDFGL 154 (317)
T ss_dssp EEEEECCC-CBHHHHHHHHHSSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCSS
T ss_pred EEEEEecC-CCHHHHHHhccccccccCCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCChHHeEEcCCCCEEECcCcc
Confidence 99999997 69999997654322233589999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++...... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||....... .........
T Consensus 155 ~~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~~ 225 (317)
T 2pmi_A 155 ARAFGIPV--------NTFSSEVVTLWYRAPDVLMGSRTYSTSIDIWSCGCILAEMITGKPLFPGTNDEE-QLKLIFDIM 225 (317)
T ss_dssp CEETTSCC--------CCCCCCCSCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHH
T ss_pred ceecCCCc--------ccCCCCcccccccCchHhhCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHHh
Confidence 98764321 11223568999999999876 468999999999999999999999997543211 111111111
Q ss_pred c--cchhhhccCC------CCCChhh--hhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 L--PEKVMEIVDP------SLLPLEE--ERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~--~~~~~~~~d~------~l~~~~~--~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
. ++.....+.. .....+. .+.............++.+++.+|++.||++|||++|+++
T Consensus 226 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~e~l~ 293 (317)
T 2pmi_A 226 GTPNESLWPSVTKLPKYNPNIQQRPPRDLRQVLQPHTKEPLDGNLMDFLHGLLQLNPDMRLSAKQALH 293 (317)
T ss_dssp CSCCTTTCGGGGGCTTCCTTCCCCCCCCSHHHHGGGCSSCCCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCChhHhhhhhhhhhcccccccccchhHHHhhcccccccCCHHHHHHHHHHCCCCcccCCCHHHHhC
Confidence 0 0110000000 0000000 0000000011122346889999999999999999999875
No 100
>3og7_A AKAP9-BRAF fusion protein; proto-oncogene, V600E, kinase, transferase; HET: 032; 2.45A {Homo sapiens} SCOP: d.144.1.7 PDB: 4fk3_A* 3c4c_A* 3c4d_A* 3idp_A* 4g9r_A* 3ii5_A* 4e26_A* 3ppj_A* 3ppk_A* 3prf_A* 3pri_A* 3psb_A* 3psd_A* 3q4c_A* 3skc_A* 3tv4_A* 3tv6_A* 3d4q_A* 4e4x_A* 4g9c_A* ...
Probab=100.00 E-value=3e-39 Score=353.19 Aligned_cols=262 Identities=26% Similarity=0.418 Sum_probs=195.9
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
..++|++.+.||+|+||+||+|++. ..||||+++..... ..+.+.+|++++++++||||+++++++.. .
T Consensus 22 ~~~~y~~~~~lG~G~~g~Vy~~~~~---~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~------~ 92 (289)
T 3og7_A 22 PDGQITVGQRIGSGSFGTVYKGKWH---GDVAVKMLNVTAPTPQQLQAFKNEVGVLRKTRHVNILLFMGYSTA------P 92 (289)
T ss_dssp CTTSCEEEEEEEECSSEEEEEEESS---SEEEEEEESCSSCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS------S
T ss_pred CccceeeeeEecCCCCeEEEEEEEc---CceEEEEEeccCCCHHHHHHHHHHHHHHHhCCCCcEEEEEeeccC------C
Confidence 3568999999999999999999864 35999999654332 24678999999999999999999997543 4
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 93 ~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~L~~lH~~---~i~H~Dlkp~Nil~~~~~~~kl~Df 164 (289)
T 3og7_A 93 QLAIVTQWCEGSSLYHHLHASET-----KFEMKKLIDIARQTARGMDYLHAK---SIIHRDLKSNNIFLHEDNTVKIGDF 164 (289)
T ss_dssp SCEEEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEETTTEEEECCC
T ss_pred ccEEEEEecCCCcHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CcccccCccceEEECCCCCEEEccc
Confidence 57899999999999999976543 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccC---CCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL---GGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
|+++....... ........||+.|+|||++. +..++.++||||||+++|||++|+.||.............
T Consensus 165 g~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~ 238 (289)
T 3og7_A 165 GLATEKSRWSG------SHQFEQLSGSILWMAPEVIRMQDSNPYSFQSDVYAFGIVLYELMTGQLPYSNINNRDQIIEMV 238 (289)
T ss_dssp C------------------------CCCTTCCHHHHC----CCSCHHHHHHHHHHHHHHHHHSSCTTSSCCCHHHHHHHH
T ss_pred eeccccccccc------cccccccCCCccccCchhhcccCCCCCCcccchHHHHHHHHHHHHCCCCccccchHHHHHHHh
Confidence 99986543211 11223456899999999986 5678889999999999999999999997543221111111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQ 1002 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~ 1002 (1009)
........... ....++.++.+++.+|++.||++|||+.|+++.|+++.+
T Consensus 239 ~~~~~~~~~~~-------------------~~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~l~~ 288 (289)
T 3og7_A 239 GRGSLSPDLSK-------------------VRSNCPKRMKRLMAECLKKKRDERPSFPRILAEIEELAR 288 (289)
T ss_dssp HHTSCCCCTTS-------------------SCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTTC
T ss_pred cccccCcchhh-------------------ccccCCHHHHHHHHHHccCChhhCCCHHHHHHHHHHHhh
Confidence 11111111000 011234568899999999999999999999999998764
No 101
>2bdw_A Hypothetical protein K11E8.1D; kinase, calmodulin activated, transferase; 1.80A {Caenorhabditis elegans} PDB: 2wel_A* 2v7o_A* 2vz6_A* 1cdm_B 1cm1_B 1cm4_B
Probab=100.00 E-value=1.1e-38 Score=359.35 Aligned_cols=253 Identities=21% Similarity=0.324 Sum_probs=203.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||.||+|.++.+++.||||+++..... ..+.+.+|++++++++||||+++++++.. ...
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~ 102 (362)
T 2bdw_A 28 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-----ESF 102 (362)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSE
T ss_pred ccCeEEeeEEecCCCeEEEEEEECCCCCEEEEEEEEcccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----CCE
Confidence 46899999999999999999999989999999999754322 23578899999999999999999998754 367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC---CceEEe
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD---MVAHVS 854 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~---~~~kl~ 854 (1009)
.++||||+++|+|.+++.... .+++.++..++.|++.||.|||++ +|+||||||+||+++.+ +.+||+
T Consensus 103 ~~lv~e~~~gg~L~~~l~~~~------~~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~ 173 (362)
T 2bdw_A 103 HYLVFDLVTGGELFEDIVARE------FYSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLA 173 (362)
T ss_dssp EEEEECCCCSCBHHHHHTTCS------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEESCSSTTCCEEEC
T ss_pred EEEEEecCCCCCHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEe
Confidence 899999999999999998654 389999999999999999999999 99999999999999865 459999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....
T Consensus 174 DfG~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~Pf~~~~~-----~~~~ 239 (362)
T 2bdw_A 174 DFGLAIEVNDS---------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ-----HRLY 239 (362)
T ss_dssp CCTTCBCCTTC---------CSCCCSCSCTTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH
T ss_pred ecCcceEecCC---------cccccCCCCccccCHHHHccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----HHHH
Confidence 99999876532 122346799999999999999999999999999999999999999974321 1111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
...... ... .+.. .......++.+++.+|++.||++|||+.|+++.
T Consensus 240 ~~i~~~--------~~~-~~~~-------~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~h 285 (362)
T 2bdw_A 240 AQIKAG--------AYD-YPSP-------EWDTVTPEAKSLIDSMLTVNPKKRITADQALKV 285 (362)
T ss_dssp HHHHHT--------CCC-CCTT-------GGGGSCHHHHHHHHHHSCSSGGGSCCHHHHTTS
T ss_pred HHHHhC--------CCC-CCcc-------cccCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 111000 000 0000 001223457899999999999999999998764
No 102
>3tt0_A Basic fibroblast growth factor receptor 1; kinase domain, transferase, transferase-transferase inhibito; HET: 07J; 2.80A {Homo sapiens}
Probab=100.00 E-value=2.1e-38 Score=360.72 Aligned_cols=270 Identities=24% Similarity=0.332 Sum_probs=213.4
Q ss_pred hccCccCCcccccCCceEEEEEEec-------CCeEEEEEEeecccc-cchHHHHHHHHHHHhc-CCCCcceEEeeeecc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHE-------NGMLVAVKVINLEQK-GGSKSFAAECEALRSI-RHRNLIKIVTICSSI 770 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~ 770 (1009)
.++|.+.+.||+|+||+||+|++.. .+..||||+++.... ...+.+.+|+++++++ +||||+++++++...
T Consensus 68 ~~~y~i~~~LG~G~~g~Vy~a~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hpnIv~~~~~~~~~ 147 (382)
T 3tt0_A 68 RDRLVLGKPLGEGAFGQVVLAEAIGLDKDKPNRVTKVAVKMLKSDATEKDLSDLISEMEMMKMIGKHKNIINLLGACTQD 147 (382)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEEETSSTTCTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS
T ss_pred hhheEeeeEEecCCCeEEEEEEEccccccccccceEEEEEeeccccCHHHHHHHHHHHHHHHHhcCCchhhhheeeeccC
Confidence 4689999999999999999999753 336899999965432 2236788999999999 999999999997643
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCC----------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCC
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQL----------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKP 840 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~ 840 (1009)
...++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||+. +|+||||||
T Consensus 148 -----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp 219 (382)
T 3tt0_A 148 -----GPLYVIVEYASKGNLREYLQARRPPGLEYSYNPSHNPEEQLSSKDLVSCAYQVARGMEYLASK---KCIHRDLAA 219 (382)
T ss_dssp -----SSCEEEEECCTTCBHHHHHHHTCCSSSSSCCCCCSSCCCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCG
T ss_pred -----CceEEEEEecCCCcHHHHHHHhcccccccccccccccccccCHHHHHHHHHHHHHHHHHHHhC---CEecCCCCc
Confidence 56799999999999999998764211 113489999999999999999999999 999999999
Q ss_pred CceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCC
Q 047768 841 SNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRP 919 (1009)
Q Consensus 841 ~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p 919 (1009)
+||+++.++.+||+|||+++........ .......||+.|+|||++.+..++.++|||||||++|||++ |+.|
T Consensus 220 ~NIll~~~~~~kL~DFG~a~~~~~~~~~------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~ellt~g~~p 293 (382)
T 3tt0_A 220 RNVLVTEDNVMKIADFGLARDIHHIDYY------KKTTNGRLPVKWMAPEALFDRIYTHQSDVWSFGVLLWEIFTLGGSP 293 (382)
T ss_dssp GGEEECTTCCEEECSCSCCCCSSCCCTT------CCCTTCCCGGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCS
T ss_pred ceEEEcCCCcEEEcccCccccccccccc------ccccCCCCCcceeCHHHhcCCCCCchhHHHHHHHHHHHHHhCCCCC
Confidence 9999999999999999999876543211 12233567899999999999999999999999999999999 9999
Q ss_pred CcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 047768 920 TESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCH 999 (1009)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~ 999 (1009)
|.... ..+......... .... ...+..++.+++.+||+.||++|||+.|+++.|++
T Consensus 294 ~~~~~-----~~~~~~~~~~~~--------~~~~-----------~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~ 349 (382)
T 3tt0_A 294 YPGVP-----VEELFKLLKEGH--------RMDK-----------PSNCTNELYMMMRDCWHAVPSQRPTFKQLVEDLDR 349 (382)
T ss_dssp STTCC-----HHHHHHHHHTTC--------CCCC-----------CSSCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CCCCC-----HHHHHHHHHcCC--------CCCC-----------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHH
Confidence 87432 112211110000 0000 01233468899999999999999999999999999
Q ss_pred HHHhhhcC
Q 047768 1000 ARQNFLGQ 1007 (1009)
Q Consensus 1000 i~~~~~~~ 1007 (1009)
+......+
T Consensus 350 ~~~~~~~~ 357 (382)
T 3tt0_A 350 IVALTSNQ 357 (382)
T ss_dssp HHHHSCSC
T ss_pred HHHHHhcC
Confidence 98765544
No 103
>1mp8_A Focal adhesion kinase 1; tyrosine protein kinase, transferase; HET: ADP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 2ijm_A* 2etm_A* 3pxk_A* 2jkq_A* 2j0m_B* 2jkm_A* 2j0l_A* 3bz3_A* 2jko_A* 2jkk_A*
Probab=100.00 E-value=6e-39 Score=349.33 Aligned_cols=261 Identities=21% Similarity=0.341 Sum_probs=198.9
Q ss_pred hccCccCCcccccCCceEEEEEEec---CCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHE---NGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||.||+|.+.. .+..||||+++.... ...+.+.+|+.++++++||||+++++++..
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~------ 87 (281)
T 1mp8_A 14 RERIELGRCIGEGQFGDVHQGIYMSPENPALAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE------ 87 (281)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEECCC--CCEEEEEEECTTTTSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS------
T ss_pred hHHeEEEeEeeecCCeeEEEEEEecCCCCceEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCccceEEEEEcc------
Confidence 4688999999999999999999864 356799999864322 234678899999999999999999998642
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 88 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~D 159 (281)
T 1mp8_A 88 NPVWIIMELCTLGELRSFLQVRKY-----SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLGD 159 (281)
T ss_dssp SSCEEEEECCTTEEHHHHHHHTTT-----TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECC
T ss_pred CccEEEEecCCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeecccccHHHEEECCCCCEEECc
Confidence 457899999999999999987643 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~ 934 (1009)
||+++....... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||....... .....
T Consensus 160 fg~~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~ell~~g~~pf~~~~~~~--~~~~i 230 (281)
T 1mp8_A 160 FGLSRYMEDSTY-------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNND--VIGRI 230 (281)
T ss_dssp --------------------------CCGGGCCHHHHHHCCCSHHHHHHHHHHHHHHHHTTSCCTTTTCCGGG--HHHHH
T ss_pred cccccccCcccc-------cccccCCCcccccChhhcccCCCCCccCchHHHHHHHHHHhcCCCCCCcCCHHH--HHHHH
Confidence 999987654321 11223456789999999998999999999999999999997 999997543221 11111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
. ....... ...++..+.+++.+|++.||++|||+.|+++.|+++.++..
T Consensus 231 ~-----------~~~~~~~-----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~ 279 (281)
T 1mp8_A 231 E-----------NGERLPM-----------PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEEK 279 (281)
T ss_dssp H-----------TTCCCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred H-----------cCCCCCC-----------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHhc
Confidence 1 1000000 11234567899999999999999999999999999987654
No 104
>3c0i_A Peripheral plasma membrane protein CASK; neurexin, Ca2+/calmodulin dependent protein kinase, Mg synaptic plasticity, pseudokinase, maguk; HET: 3AM; 1.85A {Homo sapiens} PDB: 3c0h_A* 3c0g_A* 3mfr_A* 3mfs_A* 3mft_A 3mfu_A* 3tac_A
Probab=100.00 E-value=8.7e-39 Score=359.22 Aligned_cols=255 Identities=20% Similarity=0.272 Sum_probs=202.9
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc-----ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ-----KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
++|.+.+.||+|+||+||+|.++.+++.||||+++... ....+.+.+|++++++++||||+++++++...
T Consensus 24 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~----- 98 (351)
T 3c0i_A 24 DVYELCEVIGKGPFSVVRRCINRETGQQFAVKIVDVAKFTSSPGLSTEDLKREASICHMLKHPHIVELLETYSSD----- 98 (351)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHTSSSCCHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----
T ss_pred cceEEeeEEeeCCCEEEEEEEECCCCCEEEEEEEEhhhccccccchHHHHHHHHHHHHhCCCCCCCcEEEEEEeC-----
Confidence 57999999999999999999999999999999996432 12357799999999999999999999987653
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc---eE
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV---AH 852 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~---~k 852 (1009)
...++||||+++|+|.+++...... ...+++..+..++.|++.||+|||++ +|+||||||+||+++.++. +|
T Consensus 99 ~~~~lv~e~~~g~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivHrDlkp~NIl~~~~~~~~~vk 173 (351)
T 3c0i_A 99 GMLYMVFEFMDGADLCFEIVKRADA--GFVYSEAVASHYMRQILEALRYCHDN---NIIHRDVKPHCVLLASKENSAPVK 173 (351)
T ss_dssp TEEEEEEECCSSCBHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECSSSTTCCEE
T ss_pred CEEEEEEeCCCCCCHHHHHHHhccc--CCCCCHHHHHHHHHHHHHHHHHHHHC---CceeccCChHHeEEecCCCCCcEE
Confidence 6789999999999999888654321 12489999999999999999999999 9999999999999987654 99
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHH
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~ 932 (1009)
|+|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||.... ..
T Consensus 174 l~Dfg~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~------~~ 239 (351)
T 3c0i_A 174 LGGFGVAIQLGESG--------LVAGGRVGTPHFMAPEVVKREPYGKPVDVWGCGVILFILLSGCLPFYGTK------ER 239 (351)
T ss_dssp ECCCTTCEECCTTS--------CBCCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCSSH------HH
T ss_pred EecCcceeEecCCC--------eeecCCcCCcCccCHHHHcCCCCCchHhhHHHHHHHHHHHHCCCCCCCcH------HH
Confidence 99999998765421 12234579999999999999999999999999999999999999997421 11
Q ss_pred HHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.... +........+.. ......++.+++.+|++.||++|||+.|+++
T Consensus 240 ~~~~--------i~~~~~~~~~~~--------~~~~s~~~~~li~~~L~~dP~~R~s~~e~l~ 286 (351)
T 3c0i_A 240 LFEG--------IIKGKYKMNPRQ--------WSHISESAKDLVRRMLMLDPAERITVYEALN 286 (351)
T ss_dssp HHHH--------HHHTCCCCCHHH--------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred HHHH--------HHcCCCCCCccc--------cccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 1111 111111111100 0012346789999999999999999999986
No 105
>2w4o_A Calcium/calmodulin-dependent protein kinase type IV; calmodulin-binding, nucleotide-binding, serine/threonine-protein kinase, ATP-binding; HET: DKI; 2.17A {Homo sapiens}
Probab=100.00 E-value=1.7e-38 Score=356.32 Aligned_cols=251 Identities=24% Similarity=0.321 Sum_probs=188.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|+++.+++.||||+++... ..+.+.+|++++++++||||+++++++.. ....+
T Consensus 52 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~--~~~~~~~E~~~l~~l~h~niv~~~~~~~~-----~~~~~ 124 (349)
T 2w4o_A 52 SDFFEVESELGRGATSIVYRCKQKGTQKPYALKVLKKTV--DKKIVRTEIGVLLRLSHPNIIKLKEIFET-----PTEIS 124 (349)
T ss_dssp GGTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEC------------CHHHHHCCCTTBCCEEEEEEC-----SSEEE
T ss_pred cCcEEEeeEEeeCCCEEEEEEEECCCCcEEEEEEeccch--hHHHHHHHHHHHHhCCCCCCcceeeeEec-----CCeEE
Confidence 467999999999999999999999889999999996443 34678899999999999999999999764 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC---CCceEEecc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH---DMVAHVSDF 856 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~---~~~~kl~Df 856 (1009)
+||||+++|+|.+++.... .+++.+++.++.|++.||.|||+. +|+||||||+||+++. ++.+||+||
T Consensus 125 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dikp~NIll~~~~~~~~~kl~Df 195 (349)
T 2w4o_A 125 LVLELVTGGELFDRIVEKG------YYSERDAADAVKQILEAVAYLHEN---GIVHRDLKPENLLYATPAPDAPLKIADF 195 (349)
T ss_dssp EEECCCCSCBHHHHHTTCS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESSSSTTCCEEECCC
T ss_pred EEEEeCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeEecCCCcccEEEecCCCCCCEEEccC
Confidence 9999999999999998754 389999999999999999999999 9999999999999975 889999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..............
T Consensus 196 g~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~i~-- 264 (349)
T 2w4o_A 196 GLSKIVEHQ---------VLMKTVCGTPGYCAPEILRGCAYGPEVDMWSVGIITYILLCGFEPFYDERGDQFMFRRIL-- 264 (349)
T ss_dssp C-------------------------CGGGSCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCTTCHHHHHHHHH--
T ss_pred ccccccCcc---------cccccccCCCCccCHHHhcCCCCCcccchHHHHHHHHHHHhCCCCCCCCcccHHHHHHHH--
Confidence 999865432 112245689999999999999999999999999999999999999964322211111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... .....+.. .....++.+++.+|++.||++|||+.|+++
T Consensus 265 --~~~-~~~~~~~~---------------~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 305 (349)
T 2w4o_A 265 --NCE-YYFISPWW---------------DEVSLNAKDLVRKLIVLDPKKRLTTFQALQ 305 (349)
T ss_dssp --TTC-CCCCTTTT---------------TTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred --hCC-CccCCchh---------------hhCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000 00000000 122345789999999999999999999986
No 106
>3qup_A Tyrosine-protein kinase receptor TYRO3; protein kinase inhibitor, receptor tyrosine kinase, spirocyc kinase domain, phosphotransfer, GAS6 ligand; HET: LUN; 1.90A {Mus musculus}
Probab=100.00 E-value=6.4e-39 Score=356.77 Aligned_cols=272 Identities=22% Similarity=0.369 Sum_probs=196.5
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCe---EEEEEEeeccc--ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGM---LVAVKVINLEQ--KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~---~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 773 (1009)
..++|.+.+.||+|+||+||+|++..++. .||||+++... ....+.+.+|++++++++||||+++++++......
T Consensus 21 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~ 100 (323)
T 3qup_A 21 PEQQFTLGRMLGKGEFGSVREAQLKQEDGSFVKVAVKMLKADIIASSDIEEFLREAACMKEFDHPHVAKLVGVSLRSRAK 100 (323)
T ss_dssp C---CEEEEEEEEETTEEEEEEEC-------CEEEEEEC------CHHHHHHHHHHHHHTTCCCTTBCCCCEEEECC---
T ss_pred ChhHeEEeceecccCCeEEEEEEEcccCCcceeEEEEEecccccCHHHHHHHHHHHHHHHHCCCCceehhhceeeccccc
Confidence 45689999999999999999999876654 89999996542 23356799999999999999999999997653211
Q ss_pred -CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceE
Q 047768 774 -GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 774 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~k 852 (1009)
.....++||||+++|+|.+++...........+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+|
T Consensus 101 ~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~ivH~Dikp~NIli~~~~~~k 177 (323)
T 3qup_A 101 GRLPIPMVILPFMKHGDLHAFLLASRIGENPFNLPLQTLVRFMVDIACGMEYLSSR---NFIHRDLAARNCMLAEDMTVC 177 (323)
T ss_dssp ----CEEEEEECCTTCBHHHHHHHHHC---CCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEE
T ss_pred cCCCccEEEEEeccCCcHHHHHHhhhccccccccCHHHHHHHHHHHHHHHHHHHcC---CcccCCCCcceEEEcCCCCEE
Confidence 1123489999999999999997654332233589999999999999999999999 999999999999999999999
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHH
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLH 931 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~ 931 (1009)
|+|||+++........ .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... ...
T Consensus 178 l~Dfg~a~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~ 249 (323)
T 3qup_A 178 VADFGLSRKIYSGDYY------RQGCASKLPVKWLALESLADNLYTVHSDVWAFGVTMWEIMTRGQTPYAGIENA--EIY 249 (323)
T ss_dssp ECCCCC-----------------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHH
T ss_pred Eeeccccccccccccc------cccccccCcccccCchhhcCCCCCCccchhhHHHHHHHHHhCCCCCccccChH--HHH
Confidence 9999999876543211 12223457889999999999999999999999999999999 89998754322 111
Q ss_pred HHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 932 EFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 932 ~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
... ........ ...+..++.+++.+|++.||++|||+.|+++.|+++.+.
T Consensus 250 ~~~-----------~~~~~~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~l~~~l~~ 299 (323)
T 3qup_A 250 NYL-----------IGGNRLKQ-----------PPECMEEVYDLMYQCWSADPKQRPSFTCLRMELENILGH 299 (323)
T ss_dssp HHH-----------HTTCCCCC-----------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred HHH-----------hcCCCCCC-----------CCccCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHH
Confidence 111 11000000 112334688999999999999999999999999988754
No 107
>3kex_A Receptor tyrosine-protein kinase ERBB-3; kinase domain, inactive kinase, HER3, ATP-binding, cell membrane, membrane, nucleotide-binding; HET: ANP; 2.80A {Homo sapiens} PDB: 3lmg_A*
Probab=100.00 E-value=1.2e-38 Score=354.70 Aligned_cols=260 Identities=24% Similarity=0.362 Sum_probs=204.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeE----EEEEEeeccc-ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGML----VAVKVINLEQ-KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~----vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
.++|.+.+.||+|+||+||+|++..+++. ||+|++.... ......+.+|+.++++++||||+++++++..
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~~K~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~----- 86 (325)
T 3kex_A 12 ETELRKLKVLGSGVFGTVHKGVWIPEGESIKIPVCIKVIEDKSGRQSFQAVTDHMLAIGSLDHAHIVRLLGLCPG----- 86 (325)
T ss_dssp TTTEEEEEEEECCSSCEEEEEEECCTTCSCCEEEEEEEECCTTSCSCBCSCCHHHHHHHTCCCTTBCCEEEEECB-----
T ss_pred HhHceeeeeeeecCCceEEEEEEcCCCceEEEEEEEEeccccccHHHHHHHHHHHHHHhcCCCCCcCeEEEEEcC-----
Confidence 35788999999999999999999877765 7777774332 2234567889999999999999999998743
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
...++||||+++|+|.+++..... .+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 87 -~~~~~v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~kl~ 157 (325)
T 3kex_A 87 -SSLQLVTQYLPLGSLLDHVRQHRG-----ALGPQLLLNWGVQIAKGMYYLEEH---GMVHRNLAARNVLLKSPSQVQVA 157 (325)
T ss_dssp -SSEEEEEECCTTCBSHHHHHSSGG-----GSCTTHHHHHHHHHHHHHHHHHHT---TCCCSCCSSTTEEESSSSCEEEC
T ss_pred -CccEEEEEeCCCCCHHHHHHHccc-----cCCHHHHHHHHHHHHHHHHHHHhC---CCCCCccchheEEECCCCeEEEC
Confidence 457899999999999999987543 388899999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 933 (1009)
|||+++........ .......||..|+|||++.+..++.++|||||||++|||++ |+.||...... .....
T Consensus 158 Dfg~a~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~el~~~g~~p~~~~~~~--~~~~~ 229 (325)
T 3kex_A 158 DFGVADLLPPDDKQ------LLYSEAKTPIKWMALESIHFGKYTHQSDVWSYGVTVWELMTFGAEPYAGLRLA--EVPDL 229 (325)
T ss_dssp SCSGGGGSCCCTTC------CC-----CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTSCTT--HHHHH
T ss_pred CCCcccccCccccc------ccccCCCCcccccChHHhccCCCChhhHhHHhHHHHHHHHhCCCCCccccCHH--HHHHH
Confidence 99999977543211 12234567889999999999999999999999999999999 99999754322 11111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
....... ..+ ..+..++.+++.+||+.||.+|||+.|+++.|+.+.+.
T Consensus 230 ~~~~~~~-----------~~~-----------~~~~~~~~~li~~~l~~dp~~Rps~~el~~~l~~~~~~ 277 (325)
T 3kex_A 230 LEKGERL-----------AQP-----------QICTIDVYMVMVKCWMIDENIRPTFKELANEFTRMARD 277 (325)
T ss_dssp HHTTCBC-----------CCC-----------TTBCTTTTHHHHHHTCSCTTTSCCHHHHHHHHHHHTTS
T ss_pred HHcCCCC-----------CCC-----------CcCcHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhc
Confidence 1110000 000 01122467899999999999999999999999987653
No 108
>3txo_A PKC-L, NPKC-ETA, protein kinase C ETA type; phosphotransferase, transferase-transferase inhibito; HET: TPO 07U; 2.05A {Homo sapiens}
Probab=100.00 E-value=4.7e-39 Score=360.29 Aligned_cols=245 Identities=23% Similarity=0.291 Sum_probs=195.8
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecc---cccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLE---QKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 774 (1009)
..++|.+.+.||+|+||+||+|+++.+++.||||+++.. .....+.+.+|+++++.+ +||||+++++++..
T Consensus 21 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AvK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~Iv~l~~~~~~----- 95 (353)
T 3txo_A 21 GIDNFEFIRVLGKGSFGKVMLARVKETGDLYAVKVLKKDVILQDDDVECTMTEKRILSLARNHPFLTQLFCCFQT----- 95 (353)
T ss_dssp --CCEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHHTTHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----
T ss_pred chhheEEEEEEeeCCCEEEEEEEEcCCCCEEEEEEEEHHHhcchhHHHHHHHHHHHHHhccCCCceeeEEEEEEe-----
Confidence 457899999999999999999999999999999999754 223456788999999988 79999999998654
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
....++||||+++|+|.+++..... +++.+++.++.|++.||+|||++ +||||||||+|||++.++.+||+
T Consensus 96 ~~~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NILl~~~g~ikL~ 166 (353)
T 3txo_A 96 PDRLFFVMEFVNGGDLMFHIQKSRR------FDEARARFYAAEIISALMFLHDK---GIIYRDLKLDNVLLDHEGHCKLA 166 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEEC
T ss_pred CCEEEEEEeCCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CCcccCCCHHHEEECCCCCEEEc
Confidence 3678999999999999999987653 89999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+|+...... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....
T Consensus 167 DFG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~~-----~~~~ 233 (353)
T 3txo_A 167 DFGMCKEGICNG--------VTTATFCGTPDYIAPEILQEMLYGPAVDWWAMGVLLYEMLCGHAPFEAENE-----DDLF 233 (353)
T ss_dssp CCTTCBCSCC-----------------CCGGGCCHHHHHHHHCTTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH
T ss_pred cccceeecccCC--------ccccccCCCcCeEChhhcCCCCcCCccCCCcchHHHHHHHhCCCCCCCCCH-----HHHH
Confidence 999998543221 223346799999999999999999999999999999999999999974321 1111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEM 990 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~ 990 (1009)
...... ... .+ ......+.+++.+|++.||++||++
T Consensus 234 ~~i~~~--------~~~-~p-----------~~~~~~~~~li~~lL~~dP~~R~~~ 269 (353)
T 3txo_A 234 EAILND--------EVV-YP-----------TWLHEDATGILKSFMTKNPTMRLGS 269 (353)
T ss_dssp HHHHHC--------CCC-CC-----------TTSCHHHHHHHHHHTCSSGGGSTTS
T ss_pred HHHHcC--------CCC-CC-----------CCCCHHHHHHHHHHhhhCHHHccCC
Confidence 111111 000 00 0122346789999999999999998
No 109
>3brb_A Proto-oncogene tyrosine-protein kinase MER; ATP-binding, disease mutation, glycoprotein, nucleot binding, phosphorylation, receptor; HET: ADP; 1.90A {Homo sapiens} PDB: 3bpr_A* 2p0c_A*
Probab=100.00 E-value=1.5e-38 Score=352.09 Aligned_cols=277 Identities=23% Similarity=0.398 Sum_probs=204.4
Q ss_pred HHHhccCccCCcccccCCceEEEEEEec---CCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccc
Q 047768 697 SKATNEFSSSNTIGRGSFGFVYKGVLHE---NGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSID 771 (1009)
Q Consensus 697 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 771 (1009)
....++|.+.+.||+|+||.||+|.+.. ++..||||+++..... ..+.+.+|++++++++||||+++++++....
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~ 109 (313)
T 3brb_A 30 VIDRNLLILGKILGEGEFGSVMEGNLKQEDGTSLKVAVKTMKLDNSSQREIEEFLSEAACMKDFSHPNVIRLLGVCIEMS 109 (313)
T ss_dssp BCCGGGEEEEEEEEC-CCCCEEEEEEECTTSCEEEEEEEEC---CCCHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEC--
T ss_pred ccCHHHeeeccceeecCCeEEEEEEEeccCCceeEEEEEEEeccccchhHHHHHHHHHHHHhcCCCCCeeeeeEEEeecc
Confidence 3445789999999999999999998874 4568999998654322 2357889999999999999999999987643
Q ss_pred cCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCce
Q 047768 772 FKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVA 851 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~ 851 (1009)
.......++||||+++|+|.+++...........+++.+++.++.|++.||.|||++ +|+||||||+||+++.++.+
T Consensus 110 ~~~~~~~~~v~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~ 186 (313)
T 3brb_A 110 SQGIPKPMVILPFMKYGDLHTYLLYSRLETGPKHIPLQTLLKFMVDIALGMEYLSNR---NFLHRDLAARNCMLRDDMTV 186 (313)
T ss_dssp -----CEEEEEECCTTCBHHHHHHHTTBTTSCCCCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCSGGGEEECTTSCE
T ss_pred ccCCcccEEEEecccCCCHHHHHHHhhhhcCCccCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcE
Confidence 333345699999999999999996543322334599999999999999999999999 99999999999999999999
Q ss_pred EEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccH
Q 047768 852 HVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTL 930 (1009)
Q Consensus 852 kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~ 930 (1009)
||+|||+++........ .......+++.|+|||.+.+..++.++||||||+++|||++ |+.||...... ..
T Consensus 187 kl~Dfg~~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~~--~~ 258 (313)
T 3brb_A 187 CVADFGLSKKIYSGDYY------RQGRIAKMPVKWIAIESLADRVYTSKSDVWAFGVTMWEIATRGMTPYPGVQNH--EM 258 (313)
T ss_dssp EECSCSCC----------------------CCGGGSCHHHHHSSCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GH
T ss_pred EEeecCcceeccccccc------CcccccCCCccccCchhhcCCCccchhhhHHHHHHHHHHHhcCCCCCccCCHH--HH
Confidence 99999999876543211 11223457889999999999999999999999999999999 88888653322 11
Q ss_pred HHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 931 HEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 931 ~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
..... ....... ...+..++.+++.+|++.||++|||+.|+++.|+++.+..++
T Consensus 259 ~~~~~-----------~~~~~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~l~~~lp~ 312 (313)
T 3brb_A 259 YDYLL-----------HGHRLKQ-----------PEDCLDELYEIMYSCWRTDPLDRPTFSVLRLQLEKLLESLPD 312 (313)
T ss_dssp HHHHH-----------TTCCCCC-----------BTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHC--
T ss_pred HHHHH-----------cCCCCCC-----------CccccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 11111 1000000 112334688999999999999999999999999999887654
No 110
>1kob_A Twitchin; kinase, intrasteric regulation; 2.30A {Aplysia californica} SCOP: d.144.1.7
Probab=100.00 E-value=1.3e-38 Score=360.84 Aligned_cols=253 Identities=19% Similarity=0.251 Sum_probs=204.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|.++.+++.||+|++..........+.+|++++++++||||+++++++.. ....+
T Consensus 50 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~-----~~~~~ 124 (387)
T 1kob_A 50 YDYYDILEELGSGAFGVVHRCVEKATGRVFVAKFINTPYPLDKYTVKNEISIMNQLHHPKLINLHDAFED-----KYEMV 124 (387)
T ss_dssp GGTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCSTTBCCEEEEEEC-----SSEEE
T ss_pred ccceEEEEEEecCCCEEEEEEEECCCCCEEEEEEecccchhhHHHHHHHHHHHHhCCCcCCCeEEEEEEe-----CCEEE
Confidence 3579999999999999999999999999999999975544445678999999999999999999999754 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC--CCceEEeccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH--DMVAHVSDFG 857 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~--~~~~kl~DfG 857 (1009)
+||||+++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++. ++.+||+|||
T Consensus 125 lv~E~~~gg~L~~~l~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---givHrDlkp~NIll~~~~~~~vkL~DFG 196 (387)
T 1kob_A 125 LILEFLSGGELFDRIAAEDY-----KMSEAEVINYMRQACEGLKHMHEH---SIVHLDIKPENIMCETKKASSVKIIDFG 196 (387)
T ss_dssp EEEECCCCCBHHHHTTCTTC-----CBCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSTTCCCEEECCCT
T ss_pred EEEEcCCCCcHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeecccchHHeEEecCCCCceEEEecc
Confidence 99999999999999986543 389999999999999999999999 9999999999999974 5789999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||..... .......
T Consensus 197 ~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~Pf~~~~~-----~~~~~~i 262 (387)
T 1kob_A 197 LATKLNPDE---------IVKVTTATAEFAAPEIVDREPVGFYTDMWAIGVLGYVLLSGLSPFAGEDD-----LETLQNV 262 (387)
T ss_dssp TCEECCTTS---------CEEEECSSGGGCCHHHHTTCCBCHHHHHHHHHHHHHHHHHSCCSSCCSSH-----HHHHHHH
T ss_pred cceecCCCc---------ceeeeccCCCccCchhccCCCCCCcccEeeHhHHHHHHHhCCCCCCCCCH-----HHHHHHH
Confidence 998765421 12234689999999999999999999999999999999999999974321 1111111
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
..... ..... .......++.+++.+|++.||++|||+.|+++
T Consensus 263 ~~~~~-~~~~~---------------~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 304 (387)
T 1kob_A 263 KRCDW-EFDED---------------AFSSVSPEAKDFIKNLLQKEPRKRLTVHDALE 304 (387)
T ss_dssp HHCCC-CCCSS---------------TTTTSCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HhCCC-CCCcc---------------ccccCCHHHHHHHHHHcCCChhHCcCHHHHhh
Confidence 00000 00000 00112345789999999999999999999986
No 111
>3kfa_A Tyrosine-protein kinase ABL1; CML, drug resistance, inhibitor, ATP-binding, nucleotide-binding, oncogene, TRAN; HET: B91; 1.22A {Mus musculus} SCOP: d.144.1.7 PDB: 2qoh_A* 3kf4_A* 3k5v_A* 1fpu_A* 1m52_A* 1iep_A* 2hzn_A* 1opj_A* 3ms9_A* 3mss_A* 3ik3_A* 2z60_A* 2e2b_A* 3pyy_A* 3oxz_A* 2g1t_A* 3ue4_A* 3oy3_A* 2hiw_A* 2v7a_A* ...
Probab=100.00 E-value=5.1e-39 Score=351.41 Aligned_cols=263 Identities=25% Similarity=0.428 Sum_probs=214.3
Q ss_pred HHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 698 KATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 698 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
...++|.+.+.||+|+||+||+|.++.++..||||+++... ...+.+.+|++++++++||||+++++++.. ...
T Consensus 10 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~ 83 (288)
T 3kfa_A 10 MERTDITMKHKLGGGQYGEVYEGVWKKYSLTVAVKTLKEDT-MEVEEFLKEAAVMKEIKHPNLVQLLGVCTR-----EPP 83 (288)
T ss_dssp CCGGGEEEEEESGGGTTCSEEEEEEGGGTEEEEEEEECSCS-THHHHHHHHHHHHHHCCCTTBCCEEEEECS-----SSS
T ss_pred ccccceeEEeecCCCCceeEEEeEecCCCEEEEEEecCcCH-HHHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----CCC
Confidence 35678999999999999999999999899999999986432 345778999999999999999999999754 367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+++++|.+++..... ..+++..++.++.|++.|++|||+. +|+||||||+||+++.++.+||+|||
T Consensus 84 ~~~v~e~~~~~~L~~~~~~~~~----~~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~l~Dfg 156 (288)
T 3kfa_A 84 FYIITEFMTYGNLLDYLRECNR----QEVSAVVLLYMATQISSAMEYLEKK---NFIHRDLAARNCLVGENHLVKVADFG 156 (288)
T ss_dssp EEEEEECCTTEEHHHHHHHCCT----TTSCHHHHHHHHHHHHHHHHHHHHH---TCCCSCCSGGGEEECGGGCEEECCCC
T ss_pred EEEEEEcCCCCcHHHHHHhccc----CCccHhHHHHHHHHHHHHHHHHHHC---CccCCCCCcceEEEcCCCCEEEccCc
Confidence 8999999999999999987543 2489999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~ 936 (1009)
+++....... .......+|+.|+|||++.+..++.++||||+|+++|||++ |+.||...... ........
T Consensus 157 ~~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~~g~~p~~~~~~~--~~~~~~~~ 227 (288)
T 3kfa_A 157 LSRLMTGDTY-------TAHAGAKFPIKWTAPESLAYNKFSIKSDVWAFGVLLWEIATYGMSPYPGIDLS--QVYELLEK 227 (288)
T ss_dssp GGGTSCSSSS-------EEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCGG--GHHHHHHT
T ss_pred cceeccCCcc-------ccccCCccccCcCChhhhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHHhc
Confidence 9987654321 22234567889999999999999999999999999999999 99998753222 11111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
. ... .....++.++.+++.+|++.||.+|||+.|+++.|+.+.++.
T Consensus 228 ~------------~~~----------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~~~~~l~~~~~~~ 273 (288)
T 3kfa_A 228 D------------YRM----------ERPEGCPEKVYELMRACWQWNPSDRPSFAEIHQAFETMFQES 273 (288)
T ss_dssp T------------CCC----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred c------------CCC----------CCCCCCCHHHHHHHHHHhCCChhhCcCHHHHHHHHHHHHHhc
Confidence 1 000 001123356889999999999999999999999999877653
No 112
>1fot_A TPK1 delta, CAMP-dependent protein kinase type 1; open conformation, transferase; HET: TPO; 2.80A {Saccharomyces cerevisiae} SCOP: d.144.1.7
Probab=100.00 E-value=2.1e-38 Score=350.07 Aligned_cols=246 Identities=24% Similarity=0.289 Sum_probs=202.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||+||+|+.+.+|+.||+|+++... ....+.+.+|+.+++.++||||+++++++.. ..
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~Iv~~~~~~~~-----~~ 79 (318)
T 1fot_A 5 LQDFQILRTLGTGSFGRVHLIRSRHNGRYYAMKVLKKEIVVRLKQVEHTNDERLMLSIVTHPFIIRMWGTFQD-----AQ 79 (318)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHSCCBTTBCCEEEEEEC-----SS
T ss_pred hHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhhhhHHHHHHHHHHHHhhCCCCCCceEeEEEEe-----CC
Confidence 467999999999999999999999899999999997542 2345678899999999999999999998754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++..... +++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 80 ~~~lv~e~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~Df 150 (318)
T 1fot_A 80 QIFMIMDYIEGGELFSLLRKSQR------FPNPVAKFYAAEVCLALEYLHSK---DIIYRDLKPENILLDKNGHIKITDF 150 (318)
T ss_dssp EEEEEECCCCSCBHHHHHHHTSS------CCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEeCCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CccccCCChheEEEcCCCCEEEeec
Confidence 78999999999999999987543 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++..... .....||+.|+|||++.+..++.++||||+||++|||++|+.||.... .......
T Consensus 151 g~a~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~-----~~~~~~~ 214 (318)
T 1fot_A 151 GFAKYVPDV-----------TYTLCGTPDYIAPEVVSTKPYNKSIDWWSFGILIYEMLAGYTPFYDSN-----TMKTYEK 214 (318)
T ss_dssp SSCEECSSC-----------BCCCCSCTTTCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSS-----HHHHHHH
T ss_pred CcceecCCc-----------cccccCCccccCHhHhcCCCCCcccchhhhHHHHHHHHhCCCCCCCCC-----HHHHHHH
Confidence 999865431 224579999999999999999999999999999999999999996432 1111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-----EMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-----t~~evl~ 995 (1009)
.... ... .+ .....++.+++.+|++.||++|| +++|+++
T Consensus 215 i~~~--------~~~-~p-----------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~~i~~ 258 (318)
T 1fot_A 215 ILNA--------ELR-FP-----------PFFNEDVKDLLSRLITRDLSQRLGNLQNGTEDVKN 258 (318)
T ss_dssp HHHC--------CCC-CC-----------TTSCHHHHHHHHHHTCSCTTTCTTSSTTTTHHHHT
T ss_pred HHhC--------CCC-CC-----------CCCCHHHHHHHHHHhccCHHHcCCCcCCCHHHHhc
Confidence 1111 110 00 01123577999999999999999 8888764
No 113
>3niz_A Rhodanese family protein; structural genomics, structural genomics consortium, SGC, phosphotransferase, cyclin dependent kinase; HET: ADP; 2.40A {Cryptosporidium parvum} SCOP: d.144.1.7 PDB: 2qkr_A*
Probab=100.00 E-value=4.6e-38 Score=347.33 Aligned_cols=269 Identities=22% Similarity=0.309 Sum_probs=200.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|++. +++.||||+++..... ..+.+.+|++++++++||||+++++++.. ...
T Consensus 20 ~~~y~~~~~lG~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~ 93 (311)
T 3niz_A 20 MEKYQKLEKVGEGTYGVVYKAKDS-QGRIVALKRIRLDAEDEGIPSTAIREISLLKELHHPNIVSLIDVIHS-----ERC 93 (311)
T ss_dssp SCEEEEEEEEEECSSCEEEEEEET-TSCEEEEEEEC------CHHHHHHHHHHHHHHCCCTTBCCEEEEECC-----SSC
T ss_pred HhhhHhhhhccCCCCeEEEEEEEC-CCCEEEEEEEecccccchhhHHHHHHHHHHHHcCCCCEeeeeeEEcc-----CCE
Confidence 468999999999999999999985 6899999999654322 24678899999999999999999999754 367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||++ |+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 94 ~~lv~e~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg 164 (311)
T 3niz_A 94 LTLVFEFME-KDLKKVLDENKT-----GLQDSQIKIYLYQLLRGVAHCHQH---RILHRDLKPQNLLINSDGALKLADFG 164 (311)
T ss_dssp EEEEEECCS-EEHHHHHHTCTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEcCCC-CCHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCchHhEEECCCCCEEEccCc
Confidence 899999997 589888877654 389999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
+++...... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ ........
T Consensus 165 ~a~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~-~~~~i~~~ 235 (311)
T 3niz_A 165 LARAFGIPV--------RSYTHEVVTLWYRAPDVLMGSKKYSTSVDIWSIGCIFAEMITGKPLFPGVTDDD-QLPKIFSI 235 (311)
T ss_dssp TCEETTSCC--------C---CCCCCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSTTT-HHHHHHHH
T ss_pred CceecCCCc--------ccccCCcccCCcCCHHHhcCCCCCCchHHhHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHHH
Confidence 998764321 12233568999999999876 568999999999999999999999997644332 22222221
Q ss_pred hcc---chhhhcc------CCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALP---EKVMEIV------DPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~---~~~~~~~------d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... ....... +........... .........++.+++.+|++.||++|||++|+++
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 300 (311)
T 3niz_A 236 LGTPNPREWPQVQELPLWKQRTFQVFEKKPW---SSIIPGFCQEGIDLLSNMLCFDPNKRISARDAMN 300 (311)
T ss_dssp HCCCCTTTSGGGTTSHHHHSCCCCCCCCCCH---HHHSTTCCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HCCCChHHhhhhhccchhhhcccccccCCcH---HHhCcccCHHHHHHHHHHcCCChhHCCCHHHHhc
Confidence 111 1111100 000000000000 0000112346789999999999999999999976
No 114
>1qcf_A Haematopoetic cell kinase (HCK); tyrosine kinase-inhibitor complex, DOWN-regulated kinase, ordered activation loop; HET: PTR PP1; 2.00A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 2c0i_A* 2c0o_A* 2c0t_A* 1ad5_A* 2hck_A* 3nhn_A 3hck_A 1bu1_A 3rea_B 3rbb_B
Probab=100.00 E-value=2.5e-39 Score=376.55 Aligned_cols=259 Identities=24% Similarity=0.432 Sum_probs=209.0
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
..++|.+.+.||+|+||+||+|.++ ++..||||+++... ...+.+.+|+++|++++||||+++++++.. ...
T Consensus 186 ~~~~~~~~~~lG~G~fg~V~~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~iv~l~~~~~~------~~~ 257 (454)
T 1qcf_A 186 PRESLKLEKKLGAGQFGEVWMATYN-KHTKVAVKTMKPGS-MSVEAFLAEANVMKTLQHDKLVKLHAVVTK------EPI 257 (454)
T ss_dssp CGGGEEEEEEEECCSSEEEEEEEET-TTEEEEEEEECTTS-BCHHHHHHHHHHHTTCCCTTBCCEEEEECS------SSC
T ss_pred chHHeEEEEEcccCCceEEEEEEEC-CccEEEEEEecCCC-ccHHHHHHHHHHHhhCCCCCEeeEEEEEeC------Ccc
Confidence 3467888999999999999999986 57889999997543 346789999999999999999999998752 457
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++|+|.++++.... ..+++.++..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+
T Consensus 258 ~lv~e~~~~g~L~~~l~~~~~----~~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DFG~ 330 (454)
T 1qcf_A 258 YIITEFMAKGSLLDFLKSDEG----SKQPLPKLIDFSAQIAEGMAFIEQR---NYIHRDLRAANILVSASLVCKIADFGL 330 (454)
T ss_dssp EEEECCCTTCBHHHHHHSHHH----HTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCSGGGEEECTTCCEEECSTTG
T ss_pred EEEEeecCCCcHHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCCHHHEEECCCCcEEEeeCCC
Confidence 899999999999999986432 1388999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++....... .......+|+.|+|||++....++.++|||||||++|||+| |+.||...... +.....
T Consensus 331 a~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwslG~~l~el~t~g~~P~~~~~~~-----~~~~~i 398 (454)
T 1qcf_A 331 ARVIEDNEY-------TAREGAKFPIKWTAPEAINFGSFTIKSDVWSFGILLMEIVTYGRIPYPGMSNP-----EVIRAL 398 (454)
T ss_dssp GGGBCCHHH-------HTTCSSSSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCHH-----HHHHHH
T ss_pred ceEcCCCce-------eccCCCcccccccCHHHhccCCCCcHHHHHhHHHHHHHHHhCCCCCCCCCCHH-----HHHHHH
Confidence 987643210 11223456889999999998999999999999999999999 99999754321 111110
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
. .....+ .+..++.++.+++.+||+.||++|||+.+|++.|+.+...
T Consensus 399 -----~---~~~~~~-----------~~~~~~~~l~~li~~cl~~dp~~RPt~~~i~~~L~~~~~~ 445 (454)
T 1qcf_A 399 -----E---RGYRMP-----------RPENCPEELYNIMMRCWKNRPEERPTFEYIQSVLDDFYTA 445 (454)
T ss_dssp -----H---HTCCCC-----------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSSS
T ss_pred -----H---cCCCCC-----------CCCCCCHHHHHHHHHHccCChhHCcCHHHHHHHHHHHHhc
Confidence 0 000000 1113445688999999999999999999999999887654
No 115
>3c1x_A Hepatocyte growth factor receptor; receptor tyrosine kinase, signal transduction, GRB2, SHC, ATP-binding, glycoprotein, membrane; HET: CKK; 2.17A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=5.6e-39 Score=362.78 Aligned_cols=268 Identities=24% Similarity=0.405 Sum_probs=200.5
Q ss_pred ccCccCCcccccCCceEEEEEEecCC---eEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENG---MLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~---~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
..|.+.+.||+|+||+||+|++..++ ..||||+++.... ...+.+.+|++++++++||||++++++|... ..
T Consensus 89 ~~~~~~~~LG~G~fg~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~~~~~~~~~----~~ 164 (373)
T 3c1x_A 89 LIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLRS----EG 164 (373)
T ss_dssp EEEEEEEEEECCSSSEEEEEEEEETTTEEEEEEEEECCSCSCSHHHHHHHHHHTTSTTCCCTTBCCCCEEECCC----SS
T ss_pred ceeecCcEeeeCCCeEEEEEEEECCCCcEEEEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCcceEEEEEEcC----CC
Confidence 34667789999999999999986432 4689999864322 3346789999999999999999999987432 35
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.++++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 165 ~~~lv~e~~~~g~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~~~~kL~DF 236 (373)
T 3c1x_A 165 SPLVVLPYMKHGDLRNFIRNETH-----NPTVKDLIGFGLQVAKGMKFLASK---KFVHRDLAARNCMLDEKFTVKVADF 236 (373)
T ss_dssp CCEEEEECCTTCBHHHHHHCTTC-----CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECCC
T ss_pred CeEEEEECCCCCCHHHHHhhccc-----CCCHHHHHHHHHHHHHHHHHHHHC---CEecCccchheEEECCCCCEEEeec
Confidence 67899999999999999987554 388999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++........ .........+|+.|+|||++.+..++.++|||||||++|||+| |..||...... .......
T Consensus 237 G~a~~~~~~~~~----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~DvwSlG~il~ellt~~~~p~~~~~~~--~~~~~~~ 310 (373)
T 3c1x_A 237 GLARDMYDKEFD----SVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYLL 310 (373)
T ss_dssp -------------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCSS--CHHHHHH
T ss_pred cccccccccccc----cccccCCCCCcccccChHHhcCCCCCcHHHHHHHHHHHHHHHhCcCCCCCCCCHH--HHHHHHH
Confidence 999876543211 1112234567889999999999999999999999999999999 66777643222 1111111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhcCC
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLGQR 1008 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~~~ 1008 (1009)
.. ..... +..++..+.+++.+||+.||++|||+.|+++.|+++.+.+.++.
T Consensus 311 ~~-----------~~~~~-----------p~~~~~~l~~li~~cl~~dp~~RPs~~ell~~L~~i~~~~~~~~ 361 (373)
T 3c1x_A 311 QG-----------RRLLQ-----------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGEH 361 (373)
T ss_dssp TT-----------CCCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTCCSCC
T ss_pred cC-----------CCCCC-----------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhccccc
Confidence 10 00000 11233468899999999999999999999999999998887653
No 116
>3qd2_B Eukaryotic translation initiation factor 2-alpha; EIF2A kinase, phosphoryalation, gene regulation; HET: TPO; 2.81A {Mus musculus}
Probab=100.00 E-value=2.2e-38 Score=354.02 Aligned_cols=264 Identities=23% Similarity=0.354 Sum_probs=202.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeecccc------
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDF------ 772 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------ 772 (1009)
.++|++.+.||+|+||+||+|+++.+|+.||||+++.... ...+.+.+|++++++++||||+++++++.....
T Consensus 5 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~~ 84 (332)
T 3qd2_B 5 LTDFEPIQCMGRGGFGVVFEAKNKVDDCNYAIKRIRLPNRELAREKVMREVKALAKLEHPGIVRYFNAWLETPPEKWQEE 84 (332)
T ss_dssp HHHEEEEEEEECC-CSEEEEEEETTTCCEEEEEEEECCSTTTHHHHHHHHHHHHTSCCCTTBCCEEEEEEECCSCHHHHH
T ss_pred hhcCceeeEecCCCCeEEEEEEEcCCCcEEEEEEeecCCchhHHHHHHHHHHHHHhCCCCCEeeEEEEEEEeccchhhhh
Confidence 4679999999999999999999998999999999975433 235679999999999999999999998754311
Q ss_pred ----------------------------------------------CCCceEEEEEeccCCCCHHHHHhccCCCCCccCC
Q 047768 773 ----------------------------------------------KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNL 806 (1009)
Q Consensus 773 ----------------------------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l 806 (1009)
......++||||+++|+|.+++...... ...
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~~~~L~~~~~~~~~~---~~~ 161 (332)
T 3qd2_B 85 MDEIWLKDESTDWPLSSPSPMDAPSVKIRRMDPFSTKNTVGQLQPSSPKVYLYIQMQLCRKENLKDWMNRRCSL---EDR 161 (332)
T ss_dssp HHC--------------------------------------------CCCEEEEEEECCCSSCHHHHHHTCCSG---GGS
T ss_pred hhhhhhccccccccccCCCcccccccceeeccccCcccccccccCCCCCceEEEEEEecCCCCHHHHHhcccCc---cch
Confidence 1123479999999999999999876532 346
Q ss_pred CHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccccccCCCCCCCcc----ccCCccccccc
Q 047768 807 SLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVV----ETPSSSIGVKG 882 (1009)
Q Consensus 807 ~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~----~~~~~~~~~~g 882 (1009)
++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+++........... ..........|
T Consensus 162 ~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG~a~~~~~~~~~~~~~~~~~~~~~~~~~~g 238 (332)
T 3qd2_B 162 EHGVCLHIFIQIAEAVEFLHSK---GLMHRDLKPSNIFFTMDDVVKVGDFGLVTAMDQDEEEQTVLTPMPAYATHTGQVG 238 (332)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTTCEECSCC--------------CCCSCC-
T ss_pred hhHHHHHHHHHHHHHHHHHHhC---CeeecCCCcccEEEeCCCCEEEeecCcccccccchhhccccccccccccccccCC
Confidence 7778999999999999999999 9999999999999999999999999999887654211100 00122334679
Q ss_pred cccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccc
Q 047768 883 TIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRR 962 (1009)
Q Consensus 883 t~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~ 962 (1009)
|+.|+|||++.+..++.++||||+||++|||++|..|+... ..... ....... +.
T Consensus 239 t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~~~~~~~~-------~~~~~--------~~~~~~~-~~--------- 293 (332)
T 3qd2_B 239 TKLYMSPEQIHGNNYSHKVDIFSLGLILFELLYSFSTQMER-------VRIIT--------DVRNLKF-PL--------- 293 (332)
T ss_dssp CGGGSCHHHHHCCCCCTHHHHHHHHHHHHHHHSCCCCHHHH-------HHHHH--------HHHTTCC-CH---------
T ss_pred CcCccChHHhcCCCCcchhhHHHHHHHHHHHHHcCCChhHH-------HHHHH--------HhhccCC-Cc---------
Confidence 99999999999999999999999999999999998775321 01100 0111000 00
Q ss_pred cccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 963 VRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 963 ~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.......++.+++.+|++.||++|||+.|+++
T Consensus 294 -~~~~~~~~~~~li~~~l~~~p~~Rps~~~~l~ 325 (332)
T 3qd2_B 294 -LFTQKYPQEHMMVQDMLSPSPTERPEATDIIE 325 (332)
T ss_dssp -HHHHHCHHHHHHHHHHHCSSGGGSCCHHHHHH
T ss_pred -ccccCChhHHHHHHHHccCCCCcCCCHHHHhh
Confidence 11133445689999999999999999999975
No 117
>2zv2_A Calcium/calmodulin-dependent protein kinase kinas; beta, camkk2, E.C.2.7.11.17, phosphorylation, AMPKK, metabolism, binding, calmodulin-binding; HET: 609; 2.40A {Homo sapiens}
Probab=100.00 E-value=3e-38 Score=347.02 Aligned_cols=252 Identities=22% Similarity=0.319 Sum_probs=196.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--------------------------cchHHHHHHHHHHH
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--------------------------GGSKSFAAECEALR 753 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------------------------~~~~~~~~E~~~l~ 753 (1009)
.++|.+.+.||+|+||.||+|++..+++.||||+++.... ...+.+.+|+++++
T Consensus 12 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~ 91 (298)
T 2zv2_A 12 LNQYTLKDEIGKGSYGVVKLAYNENDNTYYAMKVLSKKKLIRQAGFPRRPPPRGTRPAPGGCIQPRGPIEQVYQEIAILK 91 (298)
T ss_dssp ETTEEEEEEEEC--CCEEEEEEETTTTEEEEEEEEECC-------------------------------CHHHHHHHHHH
T ss_pred ecceEEEeEEeecCCEEEEEEEECCCCcEEEEEEeehhhhhhhcccccccccccccccccccccccchHHHHHHHHHHHH
Confidence 4689999999999999999999998999999999964321 11356889999999
Q ss_pred hcCCCCcceEEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 047768 754 SIRHRNLIKIVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPI 833 (1009)
Q Consensus 754 ~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~i 833 (1009)
+++||||+++++++... .....++||||+++++|.+++... .+++.+++.++.|++.||+|||++ +|
T Consensus 92 ~l~h~~iv~~~~~~~~~---~~~~~~lv~e~~~~~~l~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i 158 (298)
T 2zv2_A 92 KLDHPNVVKLVEVLDDP---NEDHLYMVFELVNQGPVMEVPTLK-------PLSEDQARFYFQDLIKGIEYLHYQ---KI 158 (298)
T ss_dssp TCCCTTBCCEEEEEECS---SSSEEEEEEECCTTCBSCCSSCSS-------CCCHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hCCCCCCCeEEEEEEcC---CCCEEEEEEecCCCCcHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---Ce
Confidence 99999999999997642 246789999999999998765432 389999999999999999999999 99
Q ss_pred eecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCC---CCCcccchHHHHHH
Q 047768 834 VHGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGE---ASMRGGVYSYGILL 910 (1009)
Q Consensus 834 vHrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwS~Gvvl 910 (1009)
+||||||+||+++.++.+||+|||+++...... .......||+.|+|||++.+.. ++.++|||||||++
T Consensus 159 vH~Dlkp~Nil~~~~~~~kl~Dfg~~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~~l 230 (298)
T 2zv2_A 159 IHRDIKPSNLLVGEDGHIKIADFGVSNEFKGSD--------ALLSNTVGTPAFMAPESLSETRKIFSGKALDVWAMGVTL 230 (298)
T ss_dssp ECCCCCGGGEEECTTSCEEECCCTTCEECSSSS--------CEECCCCSCGGGCCGGGCCTTCCCEESHHHHHHHHHHHH
T ss_pred eccCCCHHHEEECCCCCEEEecCCCcccccccc--------ccccCCcCCccccChhhhccCCCCCCCchhhhHhHHHHH
Confidence 999999999999999999999999998765321 1223457999999999987765 47889999999999
Q ss_pred HHHHhCCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCH
Q 047768 911 LEIFTRRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEM 990 (1009)
Q Consensus 911 ~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~ 990 (1009)
|||++|+.||.... ........... ... .+. ......++.+++.+|++.||++|||+
T Consensus 231 ~~l~~g~~pf~~~~-----~~~~~~~~~~~--------~~~-~~~---------~~~~~~~l~~li~~~l~~dp~~R~s~ 287 (298)
T 2zv2_A 231 YCFVFGQCPFMDER-----IMCLHSKIKSQ--------ALE-FPD---------QPDIAEDLKDLITRMLDKNPESRIVV 287 (298)
T ss_dssp HHHHHSSCSSCCSS-----HHHHHHHHHHC--------CCC-CCS---------SSCCCHHHHHHHHHHTCSCTTTSCCH
T ss_pred HHHHHCCCCCCCcc-----HHHHHHHHhcc--------cCC-CCC---------ccccCHHHHHHHHHHhhcChhhCCCH
Confidence 99999999996432 11111111000 000 000 00123457899999999999999999
Q ss_pred HHHHH
Q 047768 991 TDVVV 995 (1009)
Q Consensus 991 ~evl~ 995 (1009)
.|+++
T Consensus 288 ~e~l~ 292 (298)
T 2zv2_A 288 PEIKL 292 (298)
T ss_dssp HHHTT
T ss_pred HHHhc
Confidence 99875
No 118
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=100.00 E-value=1.8e-38 Score=368.32 Aligned_cols=355 Identities=18% Similarity=0.183 Sum_probs=252.6
Q ss_pred CeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEec
Q 047768 70 QRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSA 149 (1009)
Q Consensus 70 ~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l 149 (1009)
.+++.|+|+++.+++. | .++.+++|++|+|++|++++ +| ++.+++|++|+|++|++++. | ++++++|++|++
T Consensus 42 ~~L~~L~Ls~n~l~~~-~-~l~~l~~L~~L~Ls~n~l~~-~~--~~~l~~L~~L~Ls~N~l~~~-~--~~~l~~L~~L~L 113 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDM-T-GIEKLTGLTKLICTSNNITT-LD--LSQNTNLTYLACDSNKLTNL-D--VTPLTKLTYLNC 113 (457)
T ss_dssp TTCCEEECCSSCCCCC-T-TGGGCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCC-C--CTTCTTCCEEEC
T ss_pred CCCCEEEccCCCcccC-h-hhcccCCCCEEEccCCcCCe-Ec--cccCCCCCEEECcCCCCcee-e--cCCCCcCCEEEC
Confidence 4688999999999986 3 79999999999999999996 45 99999999999999999974 4 999999999999
Q ss_pred ccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCC
Q 047768 150 HRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFS 229 (1009)
Q Consensus 150 ~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 229 (1009)
++|++++ +| + ..+++|++|++++|++++. + ++++++|++|++++|+..+.+ .+..+++|++|++++|+++
T Consensus 114 ~~N~l~~-l~--~--~~l~~L~~L~l~~N~l~~l-~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~ 183 (457)
T 3bz5_A 114 DTNKLTK-LD--V--SQNPLLTYLNCARNTLTEI-D--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKIT 183 (457)
T ss_dssp CSSCCSC-CC--C--TTCTTCCEEECTTSCCSCC-C--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCC
T ss_pred CCCcCCe-ec--C--CCCCcCCEEECCCCcccee-c--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCccc
Confidence 9999986 45 2 6789999999999999974 3 889999999999999766666 5889999999999999998
Q ss_pred CCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccccccccc
Q 047768 230 GTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINF 309 (1009)
Q Consensus 230 ~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f 309 (1009)
+ +| +..+++|++|++++|++++ ++ +..+++|++|++++|++++ +| +..+++|++|++++|++++.+.
T Consensus 184 ~-l~--l~~l~~L~~L~l~~N~l~~-~~---l~~l~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~~--- 250 (457)
T 3bz5_A 184 E-LD--VSQNKLLNRLNCDTNNITK-LD---LNQNIQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELDV--- 250 (457)
T ss_dssp C-CC--CTTCTTCCEEECCSSCCSC-CC---CTTCTTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCCC---
T ss_pred e-ec--cccCCCCCEEECcCCcCCe-ec---cccCCCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcCH---
Confidence 5 44 6666666666666666662 32 3345556666666666555 23 5555555555555555554321
Q ss_pred ccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCcccc
Q 047768 310 NGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIA 389 (1009)
Q Consensus 310 ~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~ 389 (1009)
..+++|+.|++++|+
T Consensus 251 ------------------------------~~l~~L~~L~l~~n~----------------------------------- 265 (457)
T 3bz5_A 251 ------------------------------STLSKLTTLHCIQTD----------------------------------- 265 (457)
T ss_dssp ------------------------------TTCTTCCEEECTTCC-----------------------------------
T ss_pred ------------------------------HHCCCCCEEeccCCC-----------------------------------
Confidence 223445555554442
Q ss_pred CcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCcccc
Q 047768 390 NLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFF 469 (1009)
Q Consensus 390 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 469 (1009)
|+.|++++|.+.+.+| ++.+++|+.|+|++|.+.+.+|. ....|+.|++++| ++|++
T Consensus 266 ----L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~---~~~~L~~L~l~~~-------------~~L~~- 322 (457)
T 3bz5_A 266 ----LLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDC---QAAGITELDLSQN-------------PKLVY- 322 (457)
T ss_dssp ----CSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEEC---TTCCCSCCCCTTC-------------TTCCE-
T ss_pred ----CCEEECCCCccCCccc--ccccccCCEEECCCCcccceecc---CCCcceEechhhc-------------ccCCE-
Confidence 2333444444443333 23455566666666655555553 2344555555544 23332
Q ss_pred ccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccc
Q 047768 470 FAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSF 549 (1009)
Q Consensus 470 ~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 549 (1009)
|++++|++++ ++ ++++++|+.|++++|+|++ ++.|+.|++++|++
T Consensus 323 ------------------------L~L~~N~l~~-l~--l~~l~~L~~L~l~~N~l~~--------l~~L~~L~l~~n~l 367 (457)
T 3bz5_A 323 ------------------------LYLNNTELTE-LD--VSHNTKLKSLSCVNAHIQD--------FSSVGKIPALNNNF 367 (457)
T ss_dssp ------------------------EECTTCCCSC-CC--CTTCTTCSEEECCSSCCCB--------CTTGGGSSGGGTSE
T ss_pred ------------------------EECCCCcccc-cc--cccCCcCcEEECCCCCCCC--------ccccccccccCCcE
Confidence 5556666655 22 7778888888888888885 25677778888988
Q ss_pred ccccccccccccccceEcCCCccccccccccccc
Q 047768 550 SGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLEN 583 (1009)
Q Consensus 550 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 583 (1009)
+|. +++..|+.++|++|+++|.+|..+..
T Consensus 368 ~g~-----~~~~~l~~l~l~~N~l~g~ip~~~~~ 396 (457)
T 3bz5_A 368 EAE-----GQTITMPKETLTNNSLTIAVSPDLLD 396 (457)
T ss_dssp EEE-----EEEEECCCBCCBTTBEEEECCTTCBC
T ss_pred Eec-----ceeeecCccccccCcEEEEcChhHhc
Confidence 876 46677888999999999999876543
No 119
>3lxl_A Tyrosine-protein kinase JAK3; TYK2, inflammation, cancer, PAN inhibitor, ATP-binding mutation, membrane, nucleotide-binding, phosphoprot SCID; HET: IZA; 1.74A {Homo sapiens} PDB: 3lxk_A* 4hvd_A* 4hvg_A* 4hvh_A* 4hvi_A* 3pjc_A* 1yvj_A*
Probab=100.00 E-value=2.2e-39 Score=361.15 Aligned_cols=278 Identities=23% Similarity=0.306 Sum_probs=212.1
Q ss_pred hccCccCCcccccCCceEEEEEE----ecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVL----HENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||.||+|++ ..+++.||||++........+.+.+|++++++++||||+++++++.. .+.
T Consensus 22 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 98 (327)
T 3lxl_A 22 ERHLKYISQLGKGNFGSVELCRYDPLGDNTGALVAVKQLQHSGPDQQRDFQREIQILKALHSDFIVKYRGVSYG---PGR 98 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECTTSSSCSEEEEEEEESSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC---SSS
T ss_pred hhhhhhhhhccCCCCeEEEEEEeccCCCCcceEEEEEEeccCCHHHHHHHHHHHHHHHhcCCCceeEEEEEEec---CCC
Confidence 36899999999999999999995 46789999999976554455679999999999999999999998753 234
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 99 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~kl~D 170 (327)
T 3lxl_A 99 QSLRLVMEYLPSGCLRDFLQRHRA-----RLDASRLLLYSSQICKGMEYLGSR---RCVHRDLAARNILVESEAHVKIAD 170 (327)
T ss_dssp CEEEEEEECCTTCBHHHHHHHHGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEECC
T ss_pred ceEEEEEeecCCCCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChhhEEECCCCCEEEcc
Confidence 678999999999999999987543 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+++....... .........||+.|+|||++.+..++.++||||||+++|||++|+.||....... ......
T Consensus 171 fg~~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~--~~~~~~ 243 (327)
T 3lxl_A 171 FGLAKLLPLDKD-----YYVVREPGQSPIFWYAPESLSDNIFSRQSDVWSFGVVLYELFTYCDKSCSPSAEF--LRMMGC 243 (327)
T ss_dssp GGGCEECCTTCS-----EEECSSCCCSCGGGSCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHH--HHHCC-
T ss_pred cccceecccCCc-----cceeeccCCccccccCHHHhccCCCChHHhHHHHHHHHHHHHhCCCCCccccchh--hhhccc
Confidence 999987654321 1112223568889999999999999999999999999999999999986432110 000000
Q ss_pred Hhcc---chhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 936 RALP---EKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 936 ~~~~---~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
.... ..+.+.+..... ......+..++.+++.+|++.||++|||+.|+++.|+++.....
T Consensus 244 ~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~~~~~~~ 306 (327)
T 3lxl_A 244 ERDVPALSRLLELLEEGQR----------LPAPPACPAEVHELMKLCWAPSPQDRPSFSALGPQLDMLWSGSR 306 (327)
T ss_dssp ---CCHHHHHHHHHHTTCC----------CCCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHC-----
T ss_pred ccccccHHHHHHHhhcccC----------CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhhhc
Confidence 0000 001111111100 01112344568899999999999999999999999998876543
No 120
>3v8s_A RHO-associated protein kinase 1; dimerization, myosin, transferase, inhibitor, transf transferase inhibitor complex; HET: 0HD; 2.29A {Homo sapiens} PDB: 3twj_A* 3tv7_A* 2etr_A* 2esm_A* 2eto_A* 2etk_A* 3d9v_A* 3ncz_A* 3ndm_A* 2v55_A* 2f2u_A* 2h9v_A*
Probab=100.00 E-value=1.1e-38 Score=363.17 Aligned_cols=259 Identities=19% Similarity=0.245 Sum_probs=205.3
Q ss_pred HHHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecc---cccchHHHHHHHHHHHhcCCCCcceEEeeeecc
Q 047768 694 KELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLE---QKGGSKSFAAECEALRSIRHRNLIKIVTICSSI 770 (1009)
Q Consensus 694 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 770 (1009)
.++....++|.+.+.||+|+||+||+|+++.+++.||+|+++.. .....+.+.+|+++++.++||||+++++++..
T Consensus 62 ~~~~~~~~~y~~~~~LG~G~fG~V~~~~~~~~~~~~AiK~~~k~~~~~~~~~~~~~~E~~il~~l~hp~Iv~l~~~~~~- 140 (410)
T 3v8s_A 62 RDLRMKAEDYEVVKVIGRGAFGEVQLVRHKSTRKVYAMKLLSKFEMIKRSDSAFFWEERDIMAFANSPWVVQLFYAFQD- 140 (410)
T ss_dssp HHHSCCGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTCCCSTHHHHHHHHHHCCCTTBCCEEEEEEC-
T ss_pred HhcccCccccEEEEEEEcCCCEEEEEEEECCCCcEEEEEEEehhhhhhhHHHHHHHHHHHHHHhCCCCCCCeEEEEEEE-
Confidence 34445568999999999999999999999999999999999643 22334568899999999999999999999754
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV 850 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~ 850 (1009)
....++||||+++|+|.++++... +++..++.++.|++.||+|||++ +||||||||+|||++.++.
T Consensus 141 ----~~~~~lV~E~~~gg~L~~~l~~~~-------~~e~~~~~~~~qi~~aL~~LH~~---givHrDLKp~NILl~~~g~ 206 (410)
T 3v8s_A 141 ----DRYLYMVMEYMPGGDLVNLMSNYD-------VPEKWARFYTAEVVLALDAIHSM---GFIHRDVKPDNMLLDKSGH 206 (410)
T ss_dssp ----SSEEEEEECCCTTEEHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred ----CCEEEEEEeCCCCCcHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CeEeccCCHHHeeECCCCC
Confidence 378899999999999999997643 88999999999999999999999 9999999999999999999
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCC----CCCcccchHHHHHHHHHHhCCCCCcccccC
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGE----ASMRGGVYSYGILLLEIFTRRRPTESMFNE 926 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~----~~~~~DvwS~Gvvl~elltg~~p~~~~~~~ 926 (1009)
+||+|||+|+....... ......+||+.|+|||++.+.. ++.++|||||||++|||++|+.||....
T Consensus 207 ikL~DFG~a~~~~~~~~-------~~~~~~~gt~~Y~APE~l~~~~~~~~~~~~~DiwSlGvilyell~G~~Pf~~~~-- 277 (410)
T 3v8s_A 207 LKLADFGTCMKMNKEGM-------VRCDTAVGTPDYISPEVLKSQGGDGYYGRECDWWSVGVFLYEMLVGDTPFYADS-- 277 (410)
T ss_dssp EEECCCTTCEECCTTSE-------EECCSCCSCGGGCCHHHHHTTTTTCEEETHHHHHHHHHHHHHHHHSSCTTCCSS--
T ss_pred EEEeccceeEeeccCCc-------ccccCCcCCccccCHHHhhccCCCcCCCCcceEecchHHHHHHHhCCCCCCCCC--
Confidence 99999999987654210 1223467999999999987765 8899999999999999999999997432
Q ss_pred CccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCC--CCCHHHHHH
Q 047768 927 GLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFD--RMEMTDVVV 995 (1009)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~--Rpt~~evl~ 995 (1009)
............. .+.-+.. .....++.+++.+|++.+|.+ ||+++||++
T Consensus 278 ---~~~~~~~i~~~~~-~~~~p~~---------------~~~s~~~~~li~~lL~~~~~rlgR~~~~ei~~ 329 (410)
T 3v8s_A 278 ---LVGTYSKIMNHKN-SLTFPDD---------------NDISKEAKNLICAFLTDREVRLGRNGVEEIKR 329 (410)
T ss_dssp ---HHHHHHHHHTHHH-HCCCCTT---------------CCCCHHHHHHHHHHSSCGGGCTTSSCHHHHHT
T ss_pred ---hhhHHHHHHhccc-cccCCCc---------------ccccHHHHHHHHHHccChhhhCCCCCHHHHhc
Confidence 1111111111000 0000000 011235679999999999988 999999875
No 121
>1rjb_A FL cytokine receptor; kinase, structure, autoinhibition, juxtamembrane domain, transferase; 2.10A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.2e-38 Score=357.99 Aligned_cols=273 Identities=21% Similarity=0.331 Sum_probs=208.7
Q ss_pred HhccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeeccc-ccchHHHHHHHHHHHhc-CCCCcceEEeeeeccc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQ-KGGSKSFAAECEALRSI-RHRNLIKIVTICSSID 771 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 771 (1009)
..++|.+.+.||+|+||.||+|++. .++..||||+++... ....+.+.+|+++++++ +||||+++++++..
T Consensus 43 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~-- 120 (344)
T 1rjb_A 43 PRENLEFGKVLGSGAFGKVMNATAYGISKTGVSIQVAVKMLKEKADSSEREALMSELKMMTQLGSHENIVNLLGACTL-- 120 (344)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESCSSSSCEEEEEEEEECC------CHHHHHHHHHHHHHCCCTTBCCEEEEECS--
T ss_pred CHHHceeeeeecCCCCceeEEeeeeccccCCcceEEEEEecccccCHHHHHHHHHHHHHHHhhcCCCCeeeEEEEEee--
Confidence 4578999999999999999999973 356789999996442 23457899999999999 89999999999754
Q ss_pred cCCCceEEEEEeccCCCCHHHHHhccCCCC-----------------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCce
Q 047768 772 FKGVDFKALVYEYMQNGSLEEWLHQRDDQL-----------------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIV 834 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~-----------------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~iv 834 (1009)
....++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||++ +|+
T Consensus 121 ---~~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~iv 194 (344)
T 1rjb_A 121 ---SGPIYLIFEYCCYGDLLNYLRSKREKFSEDEIEYENQKRLEEEEDLNVLTFEDLLCFAYQVAKGMEFLEFK---SCV 194 (344)
T ss_dssp ---SSSCEEEEECCTTCBHHHHHHTTTTCC---------------------CCHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred ---CCccEEEEecCCCCcHHHHHhhccccccccccchhhhcccccccccccCCHHHHHHHHHHHHHHHHHHHhC---Ccc
Confidence 356899999999999999998754310 012378999999999999999999999 999
Q ss_pred ecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHH
Q 047768 835 HGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIF 914 (1009)
Q Consensus 835 Hrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ell 914 (1009)
||||||+||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++|||||||++|||+
T Consensus 195 H~Dikp~NIll~~~~~~kL~Dfg~~~~~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 268 (344)
T 1rjb_A 195 HRDLAARNVLVTHGKVVKICDFGLARDIMSDSN------YVVRGNARLPVKWMAPESLFEGIYTIKSDVWSYGILLWEIF 268 (344)
T ss_dssp ETTCSGGGEEEETTTEEEECCCGGGSCGGGCTT------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHT
T ss_pred cCCCChhhEEEcCCCcEEeCCCccCcccccCcc------ceeccCccCccCccCHHHhccCCCChhHhHHHHHHHHHHHH
Confidence 999999999999999999999999987654321 11223456788999999999999999999999999999999
Q ss_pred h-CCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 047768 915 T-RRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDV 993 (1009)
Q Consensus 915 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~ev 993 (1009)
| |+.||....... ............ .. ...+..++.+++.+||+.||.+|||+.|+
T Consensus 269 t~g~~p~~~~~~~~-~~~~~~~~~~~~-----------~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~l 325 (344)
T 1rjb_A 269 SLGVNPYPGIPVDA-NFYKLIQNGFKM-----------DQ-----------PFYATEEIYIIMQSCWAFDSRKRPSFPNL 325 (344)
T ss_dssp TTSCCSSTTCCCSH-HHHHHHHTTCCC-----------CC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred cCCCCCcccCCcHH-HHHHHHhcCCCC-----------CC-----------CCCCCHHHHHHHHHHcCCCchhCcCHHHH
Confidence 8 999997543221 111111111000 00 01223467899999999999999999999
Q ss_pred HHHHHHHHHhhhcCC
Q 047768 994 VVKLCHARQNFLGQR 1008 (1009)
Q Consensus 994 l~~L~~i~~~~~~~~ 1008 (1009)
++.|+.+.+...+++
T Consensus 326 ~~~l~~~~~~~~~~~ 340 (344)
T 1rjb_A 326 TSFLGCQLADAEEAM 340 (344)
T ss_dssp HHHHHHHC-------
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999888766543
No 122
>3a8x_A Protein kinase C IOTA type; transferase; HET: TPO; 2.00A {Homo sapiens} PDB: 3a8w_A* 1zrz_A*
Probab=100.00 E-value=2.8e-38 Score=353.36 Aligned_cols=249 Identities=22% Similarity=0.287 Sum_probs=198.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc---chHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG---GSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||.||+|+++.+++.||||+++..... ..+.+.+|+++++++ +||||+++++++.. .
T Consensus 8 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~-----~ 82 (345)
T 3a8x_A 8 LQDFDLLRVIGRGSYAKVLLVRLKKTDRIYAMKVVKKELVNDDEDIDWVQTEKHVFEQASNHPFLVGLHSCFQT-----E 82 (345)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEGGGSCSHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----S
T ss_pred hhheEEEEEEEecCCeEEEEEEECCCCCEEEEEEEEhHHhcchHHHHHHHHHHHHHHhcCCCCccCeEEEEEEe-----C
Confidence 35799999999999999999999999999999999754322 235678899999988 89999999998654 3
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.+++..... +++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 83 ~~~~lv~e~~~gg~L~~~l~~~~~------l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~D 153 (345)
T 3a8x_A 83 SRLFFVIEYVNGGDLMFHMQRQRK------LPEEHARFYSAEISLALNYLHER---GIIYRDLKLDNVLLDSEGHIKLTD 153 (345)
T ss_dssp SEEEEEECCCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEECC
T ss_pred CEEEEEEeCCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEEe
Confidence 678999999999999999987543 89999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCC----ccHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEG----LTLH 931 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~----~~~~ 931 (1009)
||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ....
T Consensus 154 FG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~ 225 (345)
T 3a8x_A 154 YGMCKEGLRPG--------DTTSTFCGTPNYIAPEILRGEDYGFSVDWWALGVLMFEMMAGRSPFDIVGSSDNPDQNTED 225 (345)
T ss_dssp GGGCBCSCCTT--------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTTTC-------CHH
T ss_pred ccccccccCCC--------CcccccCCCccccCccccCCCCCChHHhHHHHHHHHHHHHhCCCCcCCcccccccccccHH
Confidence 99998543211 22334679999999999999999999999999999999999999996432211 0111
Q ss_pred HHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCH
Q 047768 932 EFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEM 990 (1009)
Q Consensus 932 ~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~ 990 (1009)
..... +...... .+ .....++.+++.+|++.||++||++
T Consensus 226 ~~~~~--------i~~~~~~-~p-----------~~~s~~~~~li~~lL~~dP~~R~~~ 264 (345)
T 3a8x_A 226 YLFQV--------ILEKQIR-IP-----------RSLSVKAASVLKSFLNKDPKERLGC 264 (345)
T ss_dssp HHHHH--------HHHCCCC-CC-----------TTSCHHHHHHHHHHTCSSTTTSTTC
T ss_pred HHHHH--------HHcCCCC-CC-----------CCCCHHHHHHHHHHhcCCHhHCCCC
Confidence 11110 0000000 01 1122457799999999999999996
No 123
>1xjd_A Protein kinase C, theta type; PKC-theta, ATP, AMP,, transferase; HET: TPO SEP STU; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 2jed_A*
Probab=100.00 E-value=1.1e-38 Score=355.64 Aligned_cols=251 Identities=22% Similarity=0.315 Sum_probs=201.9
Q ss_pred HHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhc-CCCCcceEEeeeecccc
Q 047768 697 SKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDF 772 (1009)
Q Consensus 697 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~ 772 (1009)
....++|.+.+.||+|+||.||+|+++.+++.||||+++... ......+..|.++++.+ +||||+++++++..
T Consensus 13 ~~~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~il~~~~~hp~iv~l~~~~~~--- 89 (345)
T 1xjd_A 13 KLKIEDFILHKMLGKGSFGKVFLAEFKKTNQFFAIKALKKDVVLMDDDVECTMVEKRVLSLAWEHPFLTHMFCTFQT--- 89 (345)
T ss_dssp ---CTTEEEEEEEEECSSSEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHHTTCTTBCCEEEEEEC---
T ss_pred CCChHHeEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhHHhhhhhhHHHHHHHHHHHHhcCCCCCCCcEEEEEEe---
Confidence 345678999999999999999999999999999999997542 33456788899999887 99999999998654
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceE
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~k 852 (1009)
....++||||+++|+|.+++..... +++.++..++.|++.||+|||++ +|+||||||+||+++.++.+|
T Consensus 90 --~~~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~vk 158 (345)
T 1xjd_A 90 --KENLFFVMEYLNGGDLMYHIQSCHK------FDLSRATFYAAEIILGLQFLHSK---GIVYRDLKLDNILLDKDGHIK 158 (345)
T ss_dssp --SSEEEEEEECCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEE
T ss_pred --CCEEEEEEeCCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCChhhEEECCCCCEE
Confidence 3678999999999999999987543 89999999999999999999999 999999999999999999999
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHH
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~ 932 (1009)
|+|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ..
T Consensus 159 L~DFG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~ 225 (345)
T 1xjd_A 159 IADFGMCKENMLGD--------AKTNTFCGTPDYIAPEILLGQKYNHSVDWWSFGVLLYEMLIGQSPFHGQDE-----EE 225 (345)
T ss_dssp ECCCTTCBCCCCTT--------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HH
T ss_pred EeEChhhhhcccCC--------CcccCCCCCcccCChhhhcCCCCCChhhhHHHHHHHHHHhcCCCCCCCCCH-----HH
Confidence 99999998543221 223356799999999999999999999999999999999999999974321 11
Q ss_pred HHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHH-HHH
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMT-DVV 994 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~-evl 994 (1009)
........ ...+ + .....++.+++.+|++.||++||++. |+.
T Consensus 226 ~~~~i~~~------~~~~---p-----------~~~s~~~~~li~~lL~~dp~~R~~~~~~i~ 268 (345)
T 1xjd_A 226 LFHSIRMD------NPFY---P-----------RWLEKEAKDLLVKLFVREPEKRLGVRGDIR 268 (345)
T ss_dssp HHHHHHHC------CCCC---C-----------TTSCHHHHHHHHHHSCSSGGGSBTTBSCGG
T ss_pred HHHHHHhC------CCCC---C-----------cccCHHHHHHHHHHhcCCHhHcCCChHHHH
Confidence 11111000 0000 0 01123567899999999999999997 554
No 124
>2x4f_A Myosin light chain kinase family member 4; LUNG, breast cancer, transferase, serine/threonine-protein kinase, nucleotide-binding; HET: 16X 1PE; 2.67A {Homo sapiens}
Probab=100.00 E-value=1.5e-38 Score=359.57 Aligned_cols=247 Identities=21% Similarity=0.254 Sum_probs=195.3
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEEEEEecc
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKALVYEYM 785 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~~ 785 (1009)
.+.||+|+||.||+|++..+|+.||||+++.......+.+.+|++++++++||||+++++++... ...++||||+
T Consensus 94 ~~~lG~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~-----~~~~lv~E~~ 168 (373)
T 2x4f_A 94 TEILGGGRFGQVHKCEETATGLKLAAKIIKTRGMKDKEEVKNEISVMNQLDHANLIQLYDAFESK-----NDIVLVMEYV 168 (373)
T ss_dssp EEECC-----CEEEEEETTTCCEEEEEEEECCSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----SEEEEEEECC
T ss_pred ceEEecCcCEEEEEEEEcCCCcEEEEEEEcccccccHHHHHHHHHHHHhCCCCCCCeEEEEEEEC-----CEEEEEEeCC
Confidence 56899999999999999989999999999765544567899999999999999999999997643 6789999999
Q ss_pred CCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee--CCCCceEEeccccccccC
Q 047768 786 QNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL--DHDMVAHVSDFGLAKFLS 863 (1009)
Q Consensus 786 ~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill--~~~~~~kl~DfGla~~~~ 863 (1009)
++|+|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+|||+++...
T Consensus 169 ~~~~L~~~l~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~DFG~a~~~~ 240 (373)
T 2x4f_A 169 DGGELFDRIIDESY-----NLTELDTILFMKQICEGIRHMHQM---YILHLDLKPENILCVNRDAKQIKIIDFGLARRYK 240 (373)
T ss_dssp TTCEEHHHHHHTGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEETTTTEEEECCCSSCEECC
T ss_pred CCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CcccccCCHHHEEEecCCCCcEEEEeCCCceecC
Confidence 99999999876543 389999999999999999999999 99999999999999 677899999999998765
Q ss_pred CCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccchhh
Q 047768 864 ASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPEKVM 943 (1009)
Q Consensus 864 ~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1009)
... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....+..
T Consensus 241 ~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~-~~~~~i~~-------- 302 (373)
T 2x4f_A 241 PRE---------KLKVNFGTPEFLAPEVVNYDFVSFPTDMWSVGVIAYMLLSGLSPFLGDNDA-ETLNNILA-------- 302 (373)
T ss_dssp TTC---------BCCCCCSSCTTCCHHHHTTCBCCHHHHHHHHHHHHHHHHHSSCTTCCSSHH-HHHHHHHH--------
T ss_pred Ccc---------ccccccCCCcEeChhhccCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHh--------
Confidence 431 122346899999999999999999999999999999999999999743211 01111111
Q ss_pred hccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 944 EIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 944 ~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
........ .......++.+++.+|++.||.+|||+.|+++
T Consensus 303 ----~~~~~~~~--------~~~~~~~~~~~li~~~L~~dp~~Rps~~e~l~ 342 (373)
T 2x4f_A 303 ----CRWDLEDE--------EFQDISEEAKEFISKLLIKEKSWRISASEALK 342 (373)
T ss_dssp ----TCCCSCSG--------GGTTSCHHHHHHHHTTSCSSGGGSCCHHHHHH
T ss_pred ----ccCCCChh--------hhccCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 01100000 00122346789999999999999999999987
No 125
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.7e-38 Score=366.65 Aligned_cols=345 Identities=28% Similarity=0.382 Sum_probs=188.4
Q ss_pred CCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHh
Q 047768 168 FNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYL 247 (1009)
Q Consensus 168 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 247 (1009)
.+|+.|++++|.++. +|. +..+++|++|+|++|.+.+..+ +..+++|++|++++|++++..| +.++++|++|++
T Consensus 46 ~~l~~L~l~~~~i~~-l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L 119 (466)
T 1o6v_A 46 DQVTTLQADRLGIKS-IDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--LANLTNLTGLTL 119 (466)
T ss_dssp HTCCEEECCSSCCCC-CTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--GTTCTTCCEEEC
T ss_pred ccccEEecCCCCCcc-Ccc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--hcCCCCCCEEEC
Confidence 344555555555442 332 4455555555555555543332 5555555555555555553222 444444444444
Q ss_pred hCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCC
Q 047768 248 YGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGN 327 (1009)
Q Consensus 248 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~ 327 (1009)
++|+++ .+|. +.++++|++|++++|.+++. + .+.++++|++|+++ |.+.+..+ |..+++|+.|++++|.+..
T Consensus 120 ~~n~l~-~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (466)
T 1o6v_A 120 FNNQIT-DIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLKP--LANLTTLERLDISSNKVSD 191 (466)
T ss_dssp CSSCCC-CCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCGG--GTTCTTCCEEECCSSCCCC
T ss_pred CCCCCC-CChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCchh--hccCCCCCEEECcCCcCCC
Confidence 444444 2332 33455555555555555532 1 25555555555553 33332221 3333333333333333322
Q ss_pred CCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCC
Q 047768 328 GAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGT 407 (1009)
Q Consensus 328 ~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 407 (1009)
. ..+..+++|++|+ +++|++++..| +..+++|+.|++++|++++.
T Consensus 192 ~--------~~l~~l~~L~~L~-------------------------l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~ 236 (466)
T 1o6v_A 192 I--------SVLAKLTNLESLI-------------------------ATNNQISDITP--LGILTNLDELSLNGNQLKDI 236 (466)
T ss_dssp C--------GGGGGCTTCSEEE-------------------------CCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred C--------hhhccCCCCCEEE-------------------------ecCCccccccc--ccccCCCCEEECCCCCcccc
Confidence 1 1133444444444 44444443332 44555666666666666532
Q ss_pred CCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhh
Q 047768 408 IPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEI 487 (1009)
Q Consensus 408 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~ 487 (1009)
..+..+++|++|++++|++++..| +..+++|++|++++|++++..| +..+++|+.|++++|+++
T Consensus 237 --~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~---------- 300 (466)
T 1o6v_A 237 --GTLASLTNLTDLDLANNQISNLAP--LSGLTKLTELKLGANQISNISP--LAGLTALTNLELNENQLE---------- 300 (466)
T ss_dssp --GGGGGCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCS----------
T ss_pred --hhhhcCCCCCEEECCCCccccchh--hhcCCCCCEEECCCCccCcccc--ccCCCccCeEEcCCCccc----------
Confidence 245566666666666666664433 5666666666666666664333 555555554433333333
Q ss_pred ccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEc
Q 047768 488 TTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELD 567 (1009)
Q Consensus 488 ~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 567 (1009)
+..| ++.+++|+.|++++|++++..| +..+++|+.|++++|++++. ..++++++|++|+
T Consensus 301 ---------------~~~~--~~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~ 359 (466)
T 1o6v_A 301 ---------------DISP--ISNLKNLTYLTLYFNNISDISP--VSSLTKLQRLFFYNNKVSDV--SSLANLTNINWLS 359 (466)
T ss_dssp ---------------CCGG--GGGCTTCSEEECCSSCCSCCGG--GGGCTTCCEEECCSSCCCCC--GGGTTCTTCCEEE
T ss_pred ---------------Cchh--hcCCCCCCEEECcCCcCCCchh--hccCccCCEeECCCCccCCc--hhhccCCCCCEEe
Confidence 2222 5566777777777777776555 66777777778877777754 3677777888888
Q ss_pred CCCcccccccccccccccccCceecccccCccc
Q 047768 568 LSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGE 600 (1009)
Q Consensus 568 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ 600 (1009)
+++|++++.+| +..+++|++|++++|++++.
T Consensus 360 l~~n~l~~~~~--~~~l~~L~~L~l~~n~~~~~ 390 (466)
T 1o6v_A 360 AGHNQISDLTP--LANLTRITQLGLNDQAWTNA 390 (466)
T ss_dssp CCSSCCCBCGG--GTTCTTCCEEECCCEEEECC
T ss_pred CCCCccCccch--hhcCCCCCEEeccCCcccCC
Confidence 88888777666 77777788888888877763
No 126
>3gni_B Strad alpha; kinase fold, pseudokinase, alpha helical repeat protein, ADA protein, ATP-binding, cell cycle, kinase, nucleotide-bindin nucleus; HET: ATP CIT; 2.35A {Homo sapiens} PDB: 2wtk_B*
Probab=100.00 E-value=2.5e-38 Score=361.46 Aligned_cols=280 Identities=17% Similarity=0.166 Sum_probs=206.1
Q ss_pred HhccCccCCccccc--CCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 699 ATNEFSSSNTIGRG--SFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G--~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
..++|++.+.||+| +||+||+|+++.+++.||||+++..... ..+.+.+|++++++++||||+++++++...
T Consensus 23 ~~~~y~~~~~lG~G~~~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~---- 98 (389)
T 3gni_B 23 EGGCYELLTVIGKGFEDLMTVNLARYKPTGEYVTVRRINLEACSNEMVTFLQGELHVSKLFNHPNIVPYRATFIAD---- 98 (389)
T ss_dssp CGGGEEEEEEEEEETTTTEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET----
T ss_pred CCCcEEEEecccCCcCCceEEEEEEEcCCCCEEEEEEecccccChHHHHHHHHHHHHHHhCCCCCCCcEeEEEEEC----
Confidence 35689999999999 9999999999999999999999755422 246788899999999999999999997653
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
...++||||+++|+|.+++...... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 99 -~~~~lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~~~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~~kl~ 170 (389)
T 3gni_B 99 -NELWVVTSFMAYGSAKDLICTHFMD----GMNELAIAYILQGVLKALDYIHHM---GYVHRSVKASHILISVDGKVYLS 170 (389)
T ss_dssp -TEEEEEEECCTTCBHHHHHHHTCTT----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEEC
T ss_pred -CEEEEEEEccCCCCHHHHHhhhccc----CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEcCCCCEEEc
Confidence 6789999999999999999875322 389999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCC--CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG--GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~ 932 (1009)
|||.+........... ..........||+.|+|||++.+ ..++.++||||+||++|||++|+.||.......... .
T Consensus 171 dfg~~~~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~~~~-~ 248 (389)
T 3gni_B 171 GLRSNLSMISHGQRQR-VVHDFPKYSVKVLPWLSPEVLQQNLQGYDAKSDIYSVGITACELANGHVPFKDMPATQMLL-E 248 (389)
T ss_dssp CGGGCEECEETTEECS-CBCCCCTTCTTTGGGSCHHHHSTTSSCBCTHHHHHHHHHHHHHHHHSSCTTTTCCSTTHHH-H
T ss_pred ccccceeecccccccc-ccccccccccccccccCHHHHhccCCCCCcHhHHHHHHHHHHHHHHCCCCCCCCCHHHHHH-H
Confidence 9999876543211110 01122233578999999999988 678999999999999999999999997543322111 1
Q ss_pred HHHHhccchhhhccCCCC-------------------CC---hhhhhhh----ccccccHHHHHHHHHHHhhccCCCCCC
Q 047768 933 FAKRALPEKVMEIVDPSL-------------------LP---LEEERTN----SRRVRNEECLVAVIKTGVACSIESPFD 986 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l-------------------~~---~~~~r~~----~~~~~~~~~~~~l~~l~~~cl~~dp~~ 986 (1009)
...... ..+.+... .. ....++. ...........++.+++.+||+.||++
T Consensus 249 ~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~li~~~L~~dP~~ 324 (389)
T 3gni_B 249 KLNGTV----PCLLDTSTIPAEELTMSPSRSVANSGLSDSLTTSTPRPSNGDSPSHPYHRTFSPHFHHFVEQCLQRNPDA 324 (389)
T ss_dssp C------------------------------------------------------------CCHHHHHHHHHHTCSCTTT
T ss_pred HhcCCC----CccccccccccccccccccccccccccccccccCccccccCCCCCCccccccCHHHHHHHHHHhhcCccc
Confidence 110000 00000000 00 0000000 000111223456889999999999999
Q ss_pred CCCHHHHHHH
Q 047768 987 RMEMTDVVVK 996 (1009)
Q Consensus 987 Rpt~~evl~~ 996 (1009)
|||++|+++.
T Consensus 325 Rpta~ell~h 334 (389)
T 3gni_B 325 RPSASTLLNH 334 (389)
T ss_dssp SCCHHHHTTS
T ss_pred CCCHHHHhcC
Confidence 9999999853
No 127
>3ttj_A Mitogen-activated protein kinase 10; JNK3, protein kinase in transferase-transferase inhibitor complex; HET: JBI; 2.10A {Homo sapiens} PDB: 3tti_A* 1jnk_A*
Probab=100.00 E-value=2.1e-38 Score=368.36 Aligned_cols=274 Identities=19% Similarity=0.202 Sum_probs=199.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc--ccchHHHHHHHHHHHhcCCCCcceEEeeeeccc-cCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ--KGGSKSFAAECEALRSIRHRNLIKIVTICSSID-FKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~~~ 776 (1009)
.++|.+.+.||+|+||+||+|.+..+++.||||++.... ....+.+.+|+++++.++||||+++++++.... .....
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 140 (464)
T 3ttj_A 61 LKRYQNLKPIGSGAQGIVCAAYDAVLDRNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIISLLNVFTPQKTLEEFQ 140 (464)
T ss_dssp ETTEEEEEEEEECSSCEEEEEEETTTTEEEEEEEEESGGGSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCCSTTTCC
T ss_pred cCCeEEEEEeecCCCeEEEEEEECCCCCEEEEEEECccccChHHHHHHHHHHHHHHhCCCCCCCcEEEEEccCCccccCC
Confidence 468999999999999999999999999999999996442 223467889999999999999999999986532 13345
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++ ++.+.+.. .+++.++..++.|++.||+|||++ +|+||||||+|||++.++.+||+||
T Consensus 141 ~~~lv~E~~~~-~l~~~~~~--------~l~~~~~~~~~~qil~aL~~lH~~---~iiHrDlkp~NIll~~~~~~kl~DF 208 (464)
T 3ttj_A 141 DVYLVMELMDA-NLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF 208 (464)
T ss_dssp EEEEEEECCSE-EHHHHHTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC
T ss_pred eEEEEEeCCCC-CHHHHHhh--------cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCChHhEEEeCCCCEEEEEE
Confidence 78999999965 57776643 288999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+|+..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... ..+......
T Consensus 209 G~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~ell~g~~pF~g~~~~-~~~~~i~~~ 278 (464)
T 3ttj_A 209 GLARTAGTS---------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMVRHKILFPGRDYI-DQWNKVIEQ 278 (464)
T ss_dssp CCC-----C---------CCC----CCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHH
T ss_pred EeeeecCCC---------cccCCCcccccccCHHHHcCCCCCHHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHh
Confidence 999866432 1233467999999999999999999999999999999999999999753211 111111111
Q ss_pred hc----------cchhhhccCCCCC----Chhhhhhhc----cccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 AL----------PEKVMEIVDPSLL----PLEEERTNS----RRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~----------~~~~~~~~d~~l~----~~~~~r~~~----~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.. .......++..-. ..+...+.. ..........++.+++.+|++.||++|||++|+++
T Consensus 279 lg~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~dLl~~mL~~dP~~R~ta~e~L~ 355 (464)
T 3ttj_A 279 LGTPCPEFMKKLQPTVRNYVENRPKYAGLTFPKLFPDSLFPADSEHNKLKASQARDLLSKMLVIDPAKRISVDDALQ 355 (464)
T ss_dssp HCSCCHHHHTTSCHHHHHHHTTSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred cCCCCHHHHHHcchhhhhHhhcccccCCCChHHhCcccccccccccccccCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 10 0111111111000 000000000 00011122456889999999999999999999986
No 128
>3ork_A Serine/threonine protein kinase; structural genomics, TB structural genomics consortium, TBSG domain, signal transduction; HET: AGS; 1.60A {Mycobacterium tuberculosis} PDB: 3ori_A* 3orl_A* 3oro_A* 3orp_A* 3ort_A* 3f61_A* 1mru_A* 3f69_A* 3orm_A* 1o6y_A* 2fum_A*
Probab=100.00 E-value=5.1e-39 Score=355.31 Aligned_cols=265 Identities=20% Similarity=0.335 Sum_probs=198.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccc---hHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGG---SKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||+||+|++..+++.||||+++...... ...+.+|++++++++||||+++++++.... ....
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~-~~~~ 89 (311)
T 3ork_A 11 SDRYELGEILGFGGMSEVHLARDLRDHRDVAVKVLRADLARDPSFYLRFRREAQNAAALNHPAIVAVYDTGEAET-PAGP 89 (311)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECTTTTTSHHHHHHHHHHHTTCCCCCCTTBCCEEEEEEEEE-TTEE
T ss_pred cCcEEEEEEEccCCCEEEEEEEECCCCceEEEEEeCccccCCHHHHHHHHHHHHHHHcCCCCCcceEEEeeeccC-CCCc
Confidence 357999999999999999999999899999999997543322 346889999999999999999999876532 2223
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.++++... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 90 ~~~lv~e~~~g~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Df 160 (311)
T 3ork_A 90 LPYIVMEYVDGVTLRDIVHTEG------PMTPKRAIEVIADACQALNFSHQN---GIIHRDVKPANIMISATNAVKVMDF 160 (311)
T ss_dssp EEEEEEECCCEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEETTSCEEECCC
T ss_pred ccEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcCCCCHHHEEEcCCCCEEEeec
Confidence 5699999999999999998754 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++....... .........||+.|+|||++.+..++.++|||||||++|||++|+.||...... .....
T Consensus 161 g~a~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~~l~~ll~g~~pf~~~~~~-----~~~~~ 230 (311)
T 3ork_A 161 GIARAIADSGN-----SVTQTAAVIGTAQYLSPEQARGDSVDARSDVYSLGCVLYEVLTGEPPFTGDSPV-----SVAYQ 230 (311)
T ss_dssp SCC-----------------------CCTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHH-----HHHHH
T ss_pred cCccccccccc-----ccccccccCcCcccCCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCChH-----HHHHH
Confidence 99987654321 111223456899999999999999999999999999999999999999743211 11111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHH-HHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVV-VKLCHA 1000 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl-~~L~~i 1000 (1009)
... ........ .......++.+++.+|++.||++||++.+++ ..+.++
T Consensus 231 ~~~--------~~~~~~~~--------~~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~ 279 (311)
T 3ork_A 231 HVR--------EDPIPPSA--------RHEGLSADLDAVVLKALAKNPENRYQTAAEMRADLVRV 279 (311)
T ss_dssp HHH--------CCCCCHHH--------HSTTCCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHH
T ss_pred Hhc--------CCCCCccc--------ccCCCCHHHHHHHHHHHhcCHhhChhhHHHHHHHHHHH
Confidence 100 00000000 0012334678999999999999999766655 444443
No 129
>3gxj_A TGF-beta receptor type-1; ALK5, kinase, inhibitor, quinazoline, aortic aneurysm, ATP-binding, craniosynostosis, disease mutation, disulfide bond; HET: 855; 1.70A {Homo sapiens} PDB: 1vjy_A* 3gxl_A* 3hmm_A* 3tzm_A* 2wot_A* 2wou_A* 1py5_A* 1rw8_A*
Probab=100.00 E-value=4.3e-40 Score=362.76 Aligned_cols=272 Identities=24% Similarity=0.340 Sum_probs=193.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHh--cCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRS--IRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|++ +++.||||+++.. ....+.+|.+++.. ++||||+++++++... ......
T Consensus 2 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~ 75 (303)
T 3gxj_A 2 ARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKD-NGTWTQ 75 (303)
T ss_dssp GGGCCCCEEEEECSSSEEEEC-C--TTSCEEEEECC-T---THHHHHHHHHHHTSTTCCC-CBCCEEEEEEEE-CSSSEE
T ss_pred cceeeehhhccCCCCeEEEEEEE--cCcceEEEEeccc---chhhHHHHHHHHHHHhccCcceeeeeeecccC-CCccce
Confidence 36899999999999999999987 4889999998532 34667788888887 7999999999997654 122236
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHh--------hcCCCCceecCCCCCceeeCCCC
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLH--------HHCQPPIVHGDLKPSNVLLDHDM 849 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH--------~~~~~~ivHrdlk~~Nill~~~~ 849 (1009)
.++||||+++|+|.++++... +++.+++.++.|++.|++||| +. +|+||||||+||+++.++
T Consensus 76 ~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~~~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~Nil~~~~~ 145 (303)
T 3gxj_A 76 LWLVSDYHEHGSLFDYLNRYT-------VTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILVKKNG 145 (303)
T ss_dssp EEEEEECCTTCCHHHHHHHCC-------BCC-CHHHHC-CHHHHHC-CCCCBCSTTCBC----CCCSCCCGGGC-CCTTC
T ss_pred eEEEEeccCCCCHHHHHhccC-------cchHHHHHHHHHHHHHHHHHHHHHhhhccCC---CEeeCcCCHHHeEECCCC
Confidence 899999999999999997643 778889999999999999999 77 999999999999999999
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC------CCCCcccchHHHHHHHHHHhC-------
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG------EASMRGGVYSYGILLLEIFTR------- 916 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwS~Gvvl~elltg------- 916 (1009)
.+||+|||+++........ .........||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 146 ~~kl~DFg~a~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~ 221 (303)
T 3gxj_A 146 TCCIADLGLAVRHDSATDT----IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSIGGIH 221 (303)
T ss_dssp CC-BCCCCC-CCEETTTTE----ESCC-----CCGGGCCHHHHTTCSCTTCHHHHHHHHHHC-CCCC-CTGGGBCBTTBC
T ss_pred CEEEeecCcceeccCCCcc----cccccCCCCcCccccCHhhhcCcccccccccCcchhHHHHHHHHHHHHhcCCCcccc
Confidence 9999999999866543211 11122335799999999998876 445789999999999999999
Q ss_pred ---CCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 047768 917 ---RRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDV 993 (1009)
Q Consensus 917 ---~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~ev 993 (1009)
+.||............. ...+.+....+.... .....++...+.+++.+||+.||++|||+.|+
T Consensus 222 ~~~~~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~-----~~~~~~~~~~l~~li~~cl~~dP~~Rps~~~i 288 (303)
T 3gxj_A 222 EDYQLPYYDLVPSDPSVEEM--------RKVVCEQKLRPNIPN-----RWQSCEALRVMAKIMRECWYANGAARLTALRI 288 (303)
T ss_dssp -CCCCTTTTTCC-CCCCC-C--------HHHHTTSCCCCCCCG-----GGGSSHHHHHHHHHHHTTCCSSGGGSCCHHHH
T ss_pred ceeeccccccCCCCccHHHH--------HHHHHHhhcCCCccc-----cccchhhHHHHHHHHHHHhccCcccCCCHHHH
Confidence 55554332221111111 111222222222211 12234677789999999999999999999999
Q ss_pred HHHHHHHHHhh
Q 047768 994 VVKLCHARQNF 1004 (1009)
Q Consensus 994 l~~L~~i~~~~ 1004 (1009)
++.|+++.++.
T Consensus 289 ~~~L~~l~~~~ 299 (303)
T 3gxj_A 289 KKTLSQLSQQE 299 (303)
T ss_dssp HHHHHC-CCC-
T ss_pred HHHHHHhhhhc
Confidence 99999887653
No 130
>3dtc_A Mitogen-activated protein kinase kinase kinase 9; mixed-lineage kinase, MLK family, MLK1 and MLK3 subtype selective inhibitors; HET: VIN; 2.60A {Homo sapiens} SCOP: d.144.1.0
Probab=100.00 E-value=1.3e-38 Score=344.88 Aligned_cols=254 Identities=26% Similarity=0.395 Sum_probs=192.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc----cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK----GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|++.+.||+|+||.||+|.+. ++.||||+++.... ...+.+.+|+++++.++||||+++++++...
T Consensus 6 ~~~~~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~----- 78 (271)
T 3dtc_A 6 FAELTLEEIIGIGGFGKVYRAFWI--GDEVAVKAARHDPDEDISQTIENVRQEAKLFAMLKHPNIIALRGVCLKE----- 78 (271)
T ss_dssp TTSEEEEEEEEEETTEEEEEEEET--TEEEEEEEC----------CHHHHHHHHHHHHHCCCTTBCCEEEEECCC-----
T ss_pred hhheeeeeeeccCCCeEEEEEEEc--CCeEEEEEEecCCcccHHHHHHHHHHHHHHHHhcCCCCEeeEEEEEecC-----
Confidence 357889999999999999999984 89999999864432 2246789999999999999999999997543
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC--------
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH-------- 847 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~-------- 847 (1009)
...++||||+++++|.+++... .+++..++.++.|++.|++|||++...+|+||||||+||+++.
T Consensus 79 ~~~~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~i~~~l~~~l~~lH~~~~~~i~H~dikp~Nil~~~~~~~~~~~ 151 (271)
T 3dtc_A 79 PNLCLVMEFARGGPLNRVLSGK-------RIPPDILVNWAVQIARGMNYLHDEAIVPIIHRDLKSSNILILQKVENGDLS 151 (271)
T ss_dssp --CEEEEECCTTEEHHHHHTSS-------CCCHHHHHHHHHHHHHHHHHHHHSSSSCCCCSCCSGGGEEESSCCSSSCCS
T ss_pred CceEEEEEcCCCCCHHHHhhcC-------CCCHHHHHHHHHHHHHHHHHHHhCCCCceeecCCchHHEEEeccccccccc
Confidence 5679999999999999999643 2899999999999999999999982122999999999999986
Q ss_pred CCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCC
Q 047768 848 DMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEG 927 (1009)
Q Consensus 848 ~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~ 927 (1009)
++.+||+|||+++...... .....||+.|+|||++.+..++.++||||||+++|||++|+.||......
T Consensus 152 ~~~~kl~Dfg~~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~~- 220 (271)
T 3dtc_A 152 NKILKITDFGLAREWHRTT----------KMSAAGAYAWMAPEVIRASMFSKGSDVWSYGVLLWELLTGEVPFRGIDGL- 220 (271)
T ss_dssp SCCEEECCCCC-----------------------CCGGGSCHHHHHHCCCSHHHHHHHHHHHHHHHHHCCCTTTTSCHH-
T ss_pred CcceEEccCCccccccccc----------ccCCCCccceeCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-
Confidence 7789999999998654321 12346899999999999999999999999999999999999999753211
Q ss_pred ccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Q 047768 928 LTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHA 1000 (1009)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i 1000 (1009)
......... ..... ....+..++.+++.+|++.||++|||+.|+++.|+++
T Consensus 221 ----~~~~~~~~~--------~~~~~----------~~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~L~~l 271 (271)
T 3dtc_A 221 ----AVAYGVAMN--------KLALP----------IPSTCPEPFAKLMEDCWNPDPHSRPSFTNILDQLTTI 271 (271)
T ss_dssp ----HHHHHHHTS--------CCCCC----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHC-
T ss_pred ----HHHHhhhcC--------CCCCC----------CCcccCHHHHHHHHHHhcCCcccCcCHHHHHHHHhcC
Confidence 111110000 00000 0112334688999999999999999999999999754
No 131
>4eut_A Serine/threonine-protein kinase TBK1; ATP binding, phosphorylation, transferase-transferas inhibitor complex; HET: BX7; 2.60A {Homo sapiens}
Probab=100.00 E-value=3.2e-38 Score=360.85 Aligned_cols=286 Identities=19% Similarity=0.237 Sum_probs=217.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc-ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ-KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||+||+|+++.+++.||||+++... ....+.+.+|++++++++||||+++++++... .....
T Consensus 8 ~~~y~i~~~LG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~---~~~~~ 84 (396)
T 4eut_A 8 NHLWLLSDILGQGATANVFRGRHKKTGDLFAIKVFNNISFLRPVDVQMREFEVLKKLNHKNIVKLFAIEEET---TTRHK 84 (396)
T ss_dssp SEEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECGGGGGSCHHHHHHHHHHHHHCCCTTBCCEEEEEECT---TTCCE
T ss_pred CCceEEEEEEEcCCCeEEEEEEECCCCcEEEEEEeccccccchHHHHHHHHHHHHhcCCCCCCeEEEeeccC---CCCee
Confidence 357999999999999999999999899999999997543 23356788999999999999999999987643 23467
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee----CCCCceEEe
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL----DHDMVAHVS 854 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill----~~~~~~kl~ 854 (1009)
++||||+++|+|.+++...... ..+++.+++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+
T Consensus 85 ~lv~e~~~~g~L~~~l~~~~~~---~~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~~kL~ 158 (396)
T 4eut_A 85 VLIMEFCPCGSLYTVLEEPSNA---YGLPESEFLIVLRDVVGGMNHLREN---GIVHRNIKPGNIMRVIGEDGQSVYKLT 158 (396)
T ss_dssp EEEECCCTTEEHHHHTTSGGGT---TCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEECTTSCEEEEEC
T ss_pred EEEEecCCCCCHHHHHHhhhcc---cCCCHHHHHHHHHHHHHHHHHHHHC---CEEECCcCHHHEEEeecCCCceeEEEe
Confidence 9999999999999999875432 2389999999999999999999999 99999999999999 788889999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCC--------CCCCCcccchHHHHHHHHHHhCCCCCcccccC
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG--------GEASMRGGVYSYGILLLEIFTRRRPTESMFNE 926 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--------~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~ 926 (1009)
|||+++..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||......
T Consensus 159 DFG~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~DiwSlG~il~el~tg~~Pf~~~~~~ 229 (396)
T 4eut_A 159 DFGAARELEDD---------EQFVSLYGTEEYLHPDMYERAVLRKDHQKKYGATVDLWSIGVTFYHAATGSLPFRPFEGP 229 (396)
T ss_dssp CGGGCEECCCG---------GGSSCSSSCCTTCCHHHHHHHCC--CHHHHHHHHHHHHHHHHHHHHHHHSSCSEECTTCT
T ss_pred cCCCceEccCC---------CccccccCCccccCHHHhhccccccccccCCCcHHHHHHHHHHHHHHHHCCCCCCCCCcc
Confidence 99999876532 12234568999999998765 56788999999999999999999999754433
Q ss_pred CccHHHHHHH--hccch-hhhccCCCCCCh-hhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 047768 927 GLTLHEFAKR--ALPEK-VMEIVDPSLLPL-EEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQ 1002 (1009)
Q Consensus 927 ~~~~~~~~~~--~~~~~-~~~~~d~~l~~~-~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~ 1002 (1009)
.......... ..+.. ...+....-... ..................+.+++.+|++.||++||++.|+++.++.+.+
T Consensus 230 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~l~~ll~~~L~~dP~~R~s~~e~l~~l~~il~ 309 (396)
T 4eut_A 230 RRNKEVMYKIITGKPSGAISGVQKAENGPIDWSGDMPVSCSLSRGLQVLLTPVLANILEADQEKCWGFDQFFAETSDILH 309 (396)
T ss_dssp TTCHHHHHHHHHSCCTTCCEEEECSTTCCEEEESSCCTTCSSCHHHHHHHHHHHHHHSCCCTTTSCCHHHHHHHHHHHHT
T ss_pred cchHHHHHHHhcCCCcccchhheeccCCCcccCccCCcccccchHHHhhchHHHHHhhccChhhhccHHHHHHHHHHHhh
Confidence 2222222111 11111 111111000000 0000011112335667788999999999999999999999999988765
Q ss_pred h
Q 047768 1003 N 1003 (1009)
Q Consensus 1003 ~ 1003 (1009)
.
T Consensus 310 ~ 310 (396)
T 4eut_A 310 R 310 (396)
T ss_dssp C
T ss_pred c
Confidence 4
No 132
>2ivs_A Proto-oncogene tyrosine-protein kinase receptor RET; nucleotide-binding, hirschsprung disease, phosphorylation, disease mutation; HET: ACK; 2.00A {Homo sapiens} PDB: 2ivt_A* 2ivu_A* 2x2k_A* 2x2l_A* 2x2m_A* 2ivv_A*
Probab=100.00 E-value=1.6e-38 Score=352.04 Aligned_cols=267 Identities=22% Similarity=0.334 Sum_probs=211.0
Q ss_pred HhccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeecccc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDF 772 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 772 (1009)
..++|.+.+.||+|+||.||+|.+. .+++.||||+++.... ...+.+.+|++++++++||||+++++++..
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--- 97 (314)
T 2ivs_A 21 PRKNLVLGKTLGEGEFGKVVKATAFHLKGRAGYTTVAVKMLKENASPSELRDLLSEFNVLKQVNHPHVIKLYGACSQ--- 97 (314)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEETGGGCSSEEEEEEEECCTTCCHHHHHHHHHHHHHHTTCCCTTBCCEEEEECS---
T ss_pred chhheeeeeeecccCCeeEEEEEEeccCcccCcceEEEEeccCCCCHHHHHHHHHHHHHHhhCCCCceeeEEEEEec---
Confidence 3568999999999999999999984 3558999999964432 234678899999999999999999999754
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCC------------------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCce
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQL------------------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIV 834 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~------------------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~iv 834 (1009)
....++||||+++|+|.+++....... ....+++.+++.++.|++.||.|||++ +|+
T Consensus 98 --~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~iv 172 (314)
T 2ivs_A 98 --DGPLLLIVEYAKYGSLRGFLRESRKVGPGYLGSGGSRNSSSLDHPDERALTMGDLISFAWQISQGMQYLAEM---KLV 172 (314)
T ss_dssp --SSSCEEEEECCTTCBHHHHHHHTTTSTTEEC----------------CEECHHHHHHHHHHHHHHHHHHHHT---TEE
T ss_pred --CCceEEEEeecCCCCHHHHHHHHhhccCCcccccccccccccccccccCcCHHHHHHHHHHHHHHHHHHHHC---CCc
Confidence 356899999999999999998754310 112388999999999999999999999 999
Q ss_pred ecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHH
Q 047768 835 HGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIF 914 (1009)
Q Consensus 835 Hrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ell 914 (1009)
||||||+||+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++||||+||++|||+
T Consensus 173 H~dikp~NIli~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 246 (314)
T 2ivs_A 173 HRDLAARNILVAEGRKMKISDFGLSRDVYEEDS------YVKRSQGRIPVKWMAIESLFDHIYTTQSDVWSFGVLLWEIV 246 (314)
T ss_dssp CCCCSGGGEEEETTTEEEECCCTTCEECTTTSC------EECSSCCCSCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHH
T ss_pred ccccchheEEEcCCCCEEEcccccccccccccc------ceeccCCCCcccccChhhhcCCCcCchhhHHHHHHHHHHHH
Confidence 999999999999999999999999987654321 11122345788999999999999999999999999999999
Q ss_pred h-CCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 047768 915 T-RRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDV 993 (1009)
Q Consensus 915 t-g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~ev 993 (1009)
+ |+.||...... .......... ... ....+..++.+++.+|++.||++||++.|+
T Consensus 247 t~g~~p~~~~~~~--~~~~~~~~~~-----------~~~-----------~~~~~~~~~~~li~~~l~~dp~~Rps~~~l 302 (314)
T 2ivs_A 247 TLGGNPYPGIPPE--RLFNLLKTGH-----------RME-----------RPDNCSEEMYRLMLQCWKQEPDKRPVFADI 302 (314)
T ss_dssp TTSCCSSTTCCGG--GHHHHHHTTC-----------CCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHH
T ss_pred hCCCCCCCCCCHH--HHHHHhhcCC-----------cCC-----------CCccCCHHHHHHHHHHccCChhhCcCHHHH
Confidence 9 99999754322 1111111100 000 001233468899999999999999999999
Q ss_pred HHHHHHHHHh
Q 047768 994 VVKLCHARQN 1003 (1009)
Q Consensus 994 l~~L~~i~~~ 1003 (1009)
++.|+++.++
T Consensus 303 ~~~l~~~~~~ 312 (314)
T 2ivs_A 303 SKDLEKMMVK 312 (314)
T ss_dssp HHHHHHHHHT
T ss_pred HHHHHHHHhh
Confidence 9999998765
No 133
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=100.00 E-value=6.8e-38 Score=366.60 Aligned_cols=279 Identities=29% Similarity=0.409 Sum_probs=136.3
Q ss_pred CCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCe
Q 047768 93 LSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQG 172 (1009)
Q Consensus 93 l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~ 172 (1009)
+++|+.|+++++.++ .+|. +..+++|++|||++|.+++..| ++++++|++|++++|.+.+..| + ..+++|++
T Consensus 45 l~~l~~L~l~~~~i~-~l~~-~~~l~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~--~~l~~L~~ 116 (466)
T 1o6v_A 45 LDQVTTLQADRLGIK-SIDG-VEYLNNLTQINFSNNQLTDITP--LKNLTKLVDILMNNNQIADITP--L--ANLTNLTG 116 (466)
T ss_dssp HHTCCEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCGG--G--TTCTTCCE
T ss_pred hccccEEecCCCCCc-cCcc-hhhhcCCCEEECCCCccCCchh--hhccccCCEEECCCCccccChh--h--cCCCCCCE
Confidence 445566666666655 3443 5556666666666666654333 5556666666666555553333 1 34555566
Q ss_pred EeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCcc
Q 047768 173 LSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRF 252 (1009)
Q Consensus 173 L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 252 (1009)
|++++|++++..+ ++++++|++|++++|++.+. + .+..+++|++|+++ |.+.+.. .+.++
T Consensus 117 L~L~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-~-~~~~l~~L~~L~l~-~~~~~~~--~~~~l------------- 176 (466)
T 1o6v_A 117 LTLFNNQITDIDP--LKNLTNLNRLELSSNTISDI-S-ALSGLTSLQQLSFG-NQVTDLK--PLANL------------- 176 (466)
T ss_dssp EECCSSCCCCCGG--GTTCTTCSEEEEEEEEECCC-G-GGTTCTTCSEEEEE-ESCCCCG--GGTTC-------------
T ss_pred EECCCCCCCCChH--HcCCCCCCEEECCCCccCCC-h-hhccCCcccEeecC-CcccCch--hhccC-------------
Confidence 6666666554322 56666666666666666532 2 35666666666664 3333211 13333
Q ss_pred CCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCCC
Q 047768 253 TGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAAND 332 (1009)
Q Consensus 253 ~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~ 332 (1009)
++|++|++++|.+++. ..+..+++|++|++++|++.+..+ +..+++|+.|++++|.+...
T Consensus 177 ------------~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~---- 236 (466)
T 1o6v_A 177 ------------TTLERLDISSNKVSDI--SVLAKLTNLESLIATNNQISDITP--LGILTNLDELSLNGNQLKDI---- 236 (466)
T ss_dssp ------------TTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCC----
T ss_pred ------------CCCCEEECcCCcCCCC--hhhccCCCCCEEEecCCccccccc--ccccCCCCEEECCCCCcccc----
Confidence 4444444444444332 124445555555555555544332 22222222222222222211
Q ss_pred cchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCc
Q 047768 333 LDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVI 412 (1009)
Q Consensus 333 ~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 412 (1009)
..+..+++|++|++++|.+++. .+ +..+++|+.|++++|++++..+ +
T Consensus 237 ----~~l~~l~~L~~L~l~~n~l~~~-------------------------~~--~~~l~~L~~L~l~~n~l~~~~~--~ 283 (466)
T 1o6v_A 237 ----GTLASLTNLTDLDLANNQISNL-------------------------AP--LSGLTKLTELKLGANQISNISP--L 283 (466)
T ss_dssp ----GGGGGCTTCSEEECCSSCCCCC-------------------------GG--GTTCTTCSEEECCSSCCCCCGG--G
T ss_pred ----hhhhcCCCCCEEECCCCccccc-------------------------hh--hhcCCCCCEEECCCCccCcccc--c
Confidence 1133344444444444444322 11 4445555555555555554333 5
Q ss_pred CCcccccceecccccccCCCCcccccccccccccccCccccc
Q 047768 413 GELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQG 454 (1009)
Q Consensus 413 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 454 (1009)
..+++|++|+|++|++++..| +..+++|++|++++|++++
T Consensus 284 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~ 323 (466)
T 1o6v_A 284 AGLTALTNLELNENQLEDISP--ISNLKNLTYLTLYFNNISD 323 (466)
T ss_dssp TTCTTCSEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSC
T ss_pred cCCCccCeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCC
Confidence 555555555555555554322 4455555555555555543
No 134
>3lzb_A Epidermal growth factor receptor; epidermal growth factor kinase domain, multitargeted small M kinase inhibitor; HET: ITI; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.2e-38 Score=354.59 Aligned_cols=260 Identities=25% Similarity=0.420 Sum_probs=201.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeE----EEEEEeecc-cccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGML----VAVKVINLE-QKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~----vavK~~~~~-~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
.++|.+.+.||+|+||+||+|++..+++. ||+|.+... .....+.+.+|++++++++||||+++++++..
T Consensus 14 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~kv~iK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~----- 88 (327)
T 3lzb_A 14 ETEFKKIKVLGSGAFGTVYKGLWIPEGEKVKIPVAIKELREATSPKANKEILDEAYVMASVDNPHVCRLLGICLT----- 88 (327)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEECCTTCSCCEEEEEEEECCCSSCCCHHHHHHHHHHHTTCCBTTBCCCCEEEES-----
T ss_pred HhHceEEEEeeeCCCeEEEEEEEcCCCceEEEEEEEEeeccccCHHHHHHHHHHHHHHHhCCCCCeeEEEEEEec-----
Confidence 36799999999999999999999877765 466666433 23345789999999999999999999999764
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
...++|+||+.+|+|.+++..... .+++..++.++.|++.||.|||++ +|+||||||+||+++.++.+||+
T Consensus 89 -~~~~~v~~~~~~g~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kL~ 159 (327)
T 3lzb_A 89 -STVQLITQLMPFGCLLDYVREHKD-----NIGSQYLLNWCVQIAKGMNYLEDR---RLVHRDLAARNVLVKTPQHVKIT 159 (327)
T ss_dssp -SSEEEEECCCSSCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEETTEEEEC
T ss_pred -CCceEEEEecCCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHhhC---CCcCCCCCHHHEEEcCCCCEEEc
Confidence 347899999999999999987654 389999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 933 (1009)
|||+++....... ........||+.|+|||++.+..++.++|||||||++|||++ |+.||...... .....
T Consensus 160 DfG~a~~~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~ell~~g~~p~~~~~~~--~~~~~ 231 (327)
T 3lzb_A 160 DFGLAKLLGAEEK------EYHAEGGKVPIKWMALESILHRIYTHQSDVWSYGVTVWELMTFGSKPYDGIPAS--EISSI 231 (327)
T ss_dssp CTTC----------------------CCCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCGG--GHHHH
T ss_pred cCcceeEccCccc------cccccCCCccccccCHHHHcCCCCChHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHH
Confidence 9999987654321 112223457889999999999999999999999999999999 99999754322 11111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
..... .... ...+..++.+++.+||+.||.+||++.|+++.|+++.+.
T Consensus 232 ~~~~~-----------~~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~ 279 (327)
T 3lzb_A 232 LEKGE-----------RLPQ-----------PPICTIDVYMIMRKCWMIDADSRPKFRELIIEFSKMARD 279 (327)
T ss_dssp HHTTC-----------CCCC-----------CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHTS
T ss_pred HHcCC-----------CCCC-----------CccCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHhC
Confidence 11100 0000 112234578999999999999999999999999998753
No 135
>1t46_A HOMO sapiens V-KIT hardy-zuckerman 4 feline sarcoma viral oncogene homolog; kinase, structure, inhibitor, STI-571, gleevec, transferase activator; HET: STI; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1pkg_A* 1t45_A 3g0e_A* 3g0f_A*
Probab=100.00 E-value=1.5e-38 Score=352.26 Aligned_cols=271 Identities=23% Similarity=0.350 Sum_probs=213.6
Q ss_pred HhccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeecccc-cchHHHHHHHHHHHhc-CCCCcceEEeeeeccc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQK-GGSKSFAAECEALRSI-RHRNLIKIVTICSSID 771 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 771 (1009)
..++|.+.+.||+|+||.||+|++. .+++.||||+++.... ...+.+.+|+++++++ +||||+++++++...
T Consensus 21 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~i~~~~~~~~~~- 99 (313)
T 1t46_A 21 PRNRLSFGKTLGAGAFGKVVEATAYGLIKSDAAMTVAVKMLKPSAHLTEREALMSELKVLSYLGNHMNIVNLLGACTIG- 99 (313)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS-
T ss_pred ChhhhhHHHhhCccCCcceEEEEEeeccccchhhhhHHHhcCcchhHHHHHHHHHHHHHHhhcccCCCeeeEEEEEecC-
Confidence 3468999999999999999999963 4678999999975432 2346789999999999 999999999997543
Q ss_pred cCCCceEEEEEeccCCCCHHHHHhccCCC------------CCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCC
Q 047768 772 FKGVDFKALVYEYMQNGSLEEWLHQRDDQ------------LGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLK 839 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~------------~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk 839 (1009)
...++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||++ +|+|||||
T Consensus 100 ----~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlk 172 (313)
T 1t46_A 100 ----GPTLVITEYCCYGDLLNFLRRKRDSFICSKTSPAIMEDDELALDLEDLLSFSYQVAKGMAFLASK---NCIHRDLA 172 (313)
T ss_dssp ----SSCEEEEECCTTEEHHHHHHHTTTTC--------------CCCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCS
T ss_pred ----CCcEEEEecCCCCCHHHHHHhcccccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCc
Confidence 5679999999999999999875431 0112489999999999999999999999 99999999
Q ss_pred CCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCC
Q 047768 840 PSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRR 918 (1009)
Q Consensus 840 ~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~ 918 (1009)
|+||+++.++.+||+|||+++........ .......||+.|+|||++.+..++.++||||||+++|||+| |+.
T Consensus 173 p~Nil~~~~~~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~ 246 (313)
T 1t46_A 173 ARNILLTHGRITKICDFGLARDIKNDSNY------VVKGNARLPVKWMAPESIFNCVYTFESDVWSYGIFLWELFSLGSS 246 (313)
T ss_dssp GGGEEEETTTEEEECCCGGGSCTTSCTTS------EECSSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCC
T ss_pred cceEEEcCCCCEEEccccccccccccccc------eeccCCCCcceeeChHHhcCCCCChHHHHHHHHHHHHHHHhCCCC
Confidence 99999999999999999999876543211 11223557889999999999999999999999999999999 999
Q ss_pred CCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 047768 919 PTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLC 998 (1009)
Q Consensus 919 p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~ 998 (1009)
||....... .......... ... ....+..++.+++.+|++.||.+|||+.|+++.|+
T Consensus 247 p~~~~~~~~-~~~~~~~~~~--------~~~--------------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 303 (313)
T 1t46_A 247 PYPGMPVDS-KFYKMIKEGF--------RML--------------SPEHAPAEMYDIMKTCWDADPLKRPTFKQIVQLIE 303 (313)
T ss_dssp SSTTCCSSH-HHHHHHHHTC--------CCC--------------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CCCcccchh-HHHHHhccCC--------CCC--------------CcccCCHHHHHHHHHHcCCCchhCcCHHHHHHHHH
Confidence 987543221 1111111110 000 00122346789999999999999999999999999
Q ss_pred HHHHhhhc
Q 047768 999 HARQNFLG 1006 (1009)
Q Consensus 999 ~i~~~~~~ 1006 (1009)
++.++...
T Consensus 304 ~~~~~~~~ 311 (313)
T 1t46_A 304 KQISESTN 311 (313)
T ss_dssp HHHHHTCC
T ss_pred HHHHHhhc
Confidence 98887543
No 136
>3uc3_A Serine/threonine-protein kinase SRK2I; SNRK2, ABA signaling, transferase; 1.90A {Arabidopsis thaliana} PDB: 3zut_A 3zuu_A 3uc4_A 3ujg_A 3udb_A
Probab=100.00 E-value=4.1e-38 Score=354.79 Aligned_cols=254 Identities=24% Similarity=0.284 Sum_probs=194.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|+++.+++.||||++.... ...+.+.+|+.++++++||||+++++++.. ....+
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~~~ 92 (361)
T 3uc3_A 19 SDRYDFVKDIGSGNFGVARLMRDKLTKELVAVKYIERGA-AIDENVQREIINHRSLRHPNIVRFKEVILT-----PTHLA 92 (361)
T ss_dssp TTTEEEEEEESSSTTSSEEEEEETTTCCEEEEEEEESST-TSCHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSEEE
T ss_pred CCcEEEEEEeccCCCEEEEEEEECCCCcEEEEEEEecCc-cccHHHHHHHHHHHhCCCCCCCcEEEEEee-----CCEEE
Confidence 468999999999999999999999999999999996433 235678899999999999999999999764 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc--eEEeccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV--AHVSDFG 857 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~--~kl~DfG 857 (1009)
+||||+++|+|.+++..... +++..++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|||
T Consensus 93 lv~e~~~~~~L~~~l~~~~~------~~~~~~~~i~~ql~~~L~~LH~~---~ivH~Dlkp~Nill~~~~~~~~kl~Dfg 163 (361)
T 3uc3_A 93 IIMEYASGGELYERICNAGR------FSEDEARFFFQQLLSGVSYCHSM---QICHRDLKLENTLLDGSPAPRLKICDFG 163 (361)
T ss_dssp EEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCCSCCCCGGGEEECSSSSCCEEECCCC
T ss_pred EEEEeCCCCCHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEcCCCCceEEEeecC
Confidence 99999999999999977543 89999999999999999999999 9999999999999987765 9999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCc-ccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMR-GGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~-~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
+++..... .......||+.|+|||++.+..++.+ +||||+||++|||++|+.||....... ........
T Consensus 164 ~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~~~-~~~~~~~~ 233 (361)
T 3uc3_A 164 YSKSSVLH---------SQPKSTVGTPAYIAPEVLLRQEYDGKIADVWSCGVTLYVMLVGAYPFEDPEEPR-DYRKTIQR 233 (361)
T ss_dssp CC------------------------CTTSCHHHHHCSSCCHHHHHHHHHHHHHHHHHHSSCSCC----CC-CHHHHHHH
T ss_pred cccccccc---------CCCCCCcCCCCcCChhhhcCCCCCCCeeeeehhHHHHHHHHhCCCCCCCCccHH-HHHHHHHH
Confidence 99743321 12234569999999999988887655 899999999999999999997543321 22222221
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.. ........ ......++.+++.+|++.||++|||+.|+++.
T Consensus 234 ~~--------~~~~~~~~----------~~~~s~~~~~li~~~L~~dP~~Rps~~ell~h 275 (361)
T 3uc3_A 234 IL--------SVKYSIPD----------DIRISPECCHLISRIFVADPATRISIPEIKTH 275 (361)
T ss_dssp HH--------TTCCCCCT----------TSCCCHHHHHHHHHHSCSCTTTSCCHHHHHTS
T ss_pred Hh--------cCCCCCCC----------cCCCCHHHHHHHHHHccCChhHCcCHHHHHhC
Confidence 11 11110000 00122457799999999999999999999864
No 137
>1ob3_A PFPK5, cell division control protein 2 homolog; transferase, serine/threonine-protein kinase, ATP-binding, phosphorylation, CDK; 1.9A {Plasmodium falciparum} SCOP: d.144.1.7 PDB: 1v0p_A* 1v0o_A* 1v0b_A
Probab=100.00 E-value=2.8e-38 Score=345.36 Aligned_cols=268 Identities=21% Similarity=0.311 Sum_probs=198.0
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
++|.+.+.||+|+||+||+|++ .+++.||||+++.... ...+.+.+|++++++++||||+++++++.. ....
T Consensus 2 ~~y~~~~~lg~G~~g~V~~~~~-~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~ 75 (288)
T 1ob3_A 2 EKYHGLEKIGEGTYGVVYKAQN-NYGETFALKKIRLEKEDEGIPSTTIREISILKELKHSNIVKLYDVIHT-----KKRL 75 (288)
T ss_dssp CSEEEEEEEEEETTEEEEEEEE-TTSCEEEEEEECCSSGGGCCCHHHHHHHHGGGGCCCTTBCCEEEEEEC-----SSCE
T ss_pred ccchhhhhcccCCCEEEEEEEc-CCCCEEEEEEEeccccccccchhHHHHHHHHHhcCCCCEeeeeeEEcc-----CCeE
Confidence 4788999999999999999998 5789999999964432 234678899999999999999999999754 3678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++ +|.+++..... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 76 ~lv~e~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~ 146 (288)
T 1ob3_A 76 VLVFEHLDQ-DLKKLLDVCEG-----GLESVTAKSFLLQLLNGIAYCHDR---RVLHRDLKPQNLLINREGELKIADFGL 146 (288)
T ss_dssp EEEEECCSE-EHHHHHHTSTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCTTH
T ss_pred EEEEEecCC-CHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEeECcc
Confidence 999999975 99999987543 389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||....... .........
T Consensus 147 ~~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~~~~~~ 217 (288)
T 1ob3_A 147 ARAFGIPV--------RKYTHEIVTLWYRAPDVLMGSKKYSTTIDIWSVGCIFAEMVNGTPLFPGVSEAD-QLMRIFRIL 217 (288)
T ss_dssp HHHHCC-----------------CCCTTCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHH
T ss_pred ccccCccc--------cccccccccccccCchheeCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHH
Confidence 98764321 122235689999999998764 58999999999999999999999997543221 111111111
Q ss_pred ccc---hhhhc-----cCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPE---KVMEI-----VDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~---~~~~~-----~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... ..... .++...... +............++.+++.+|++.||++|||++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 280 (288)
T 1ob3_A 218 GTPNSKNWPNVTELPKYDPNFTVYE---PLPWESFLKGLDESGIDLLSKMLKLDPNQRITAKQALE 280 (288)
T ss_dssp CCCCTTTSTTGGGSTTCCTTCCCCC---CCCGGGTCCSCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCChhhchhhhccccccccccccc---CccHHHHhhhcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 000 00000 000000000 00000001123346789999999999999999999975
No 138
>1b6c_B TGF-B superfamily receptor type I; complex (isomerase/protein kinase), receptor serine/threonine kinase; 2.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1ias_A 2x7o_A* 3faa_A* 3kcf_A*
Probab=100.00 E-value=1.3e-37 Score=349.29 Aligned_cols=276 Identities=24% Similarity=0.337 Sum_probs=215.3
Q ss_pred HHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHh--cCCCCcceEEeeeeccccC
Q 047768 696 LSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRS--IRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 696 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~--l~h~niv~l~~~~~~~~~~ 773 (1009)
.....++|.+.+.||+|+||.||+|++ +++.||||+++.. ..+.+.+|+++++. ++||||+++++++.... .
T Consensus 37 ~~~~~~~y~~~~~lg~G~~g~Vy~~~~--~~~~vavK~~~~~---~~~~~~~e~~~~~~~~l~h~ni~~~~~~~~~~~-~ 110 (342)
T 1b6c_B 37 QRTIARTIVLQESIGKGRFGEVWRGKW--RGEEVAVKIFSSR---EERSWFREAEIYQTVMLRHENILGFIAADNKDN-G 110 (342)
T ss_dssp HHHHHHHCEEEEEEEEETTEEEEEEEE--TTEEEEEEEECGG---GHHHHHHHHHHHHHSCCCCTTBCCEEEEEECCC-S
T ss_pred cccccccEEEEeeecCCCCcEEEEEEE--cCccEEEEEeCch---hHHHHHHHHHHHHHhhcCCCcEEEEEeeecccC-C
Confidence 344567899999999999999999988 4899999998643 34677889999887 68999999999976531 1
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHh--------hcCCCCceecCCCCCceee
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLH--------HHCQPPIVHGDLKPSNVLL 845 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH--------~~~~~~ivHrdlk~~Nill 845 (1009)
.....++||||+++|+|.+++.... +++.+++.++.|++.||+||| +. +|+||||||+||++
T Consensus 111 ~~~~~~lv~e~~~~g~L~~~l~~~~-------~~~~~~~~i~~~i~~~l~~lH~~~~~~~~~~---~ivH~Dlkp~NIll 180 (342)
T 1b6c_B 111 TWTQLWLVSDYHEHGSLFDYLNRYT-------VTVEGMIKLALSTASGLAHLHMEIVGTQGKP---AIAHRDLKSKNILV 180 (342)
T ss_dssp SCCCEEEEECCCTTCBHHHHHHHCC-------BCHHHHHHHHHHHHHHHHHHHCCBCSTTCBC---EEECSCCSGGGEEE
T ss_pred ccceeEEEEeecCCCcHHHHHhccC-------ccHHHHHHHHHHHHHHHHHHHHHHhhhcccC---CeeeCCCCHHHEEE
Confidence 1237899999999999999997643 899999999999999999999 66 99999999999999
Q ss_pred CCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC------CCCCcccchHHHHHHHHHHhC---
Q 047768 846 DHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG------EASMRGGVYSYGILLLEIFTR--- 916 (1009)
Q Consensus 846 ~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~------~~~~~~DvwS~Gvvl~elltg--- 916 (1009)
+.++.+||+|||+++........ .........||+.|+|||++.+. .++.++|||||||++|||+||
T Consensus 181 ~~~~~~kL~Dfg~~~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~el~tg~~~ 256 (342)
T 1b6c_B 181 KKNGTCCIADLGLAVRHDSATDT----IDIAPNHRVGTKRYMAPEVLDDSINMKHFESFKRADIYAMGLVFWEIARRCSI 256 (342)
T ss_dssp CTTSCEEECCCTTCEEEETTTTE----EEECCCSCCCCGGGCCHHHHTSCCCTTCHHHHHHHHHHHHHHHHHHHHTTBCB
T ss_pred CCCCCEEEEECCCceeccccccc----cccccccCCcCcccCCHhhhcccccccccccCCcccHHHHHHHHHHHHhccCc
Confidence 99999999999999876543210 00122345799999999998776 334789999999999999999
Q ss_pred -------CCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCC
Q 047768 917 -------RRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRME 989 (1009)
Q Consensus 917 -------~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt 989 (1009)
+.||............+...... ..+.+.... .....++...+.+++.+||+.||++|||
T Consensus 257 ~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~-----~~~~~~~~~~l~~li~~cl~~dp~~Rps 323 (342)
T 1b6c_B 257 GGIHEDYQLPYYDLVPSDPSVEEMRKVVCE--------QKLRPNIPN-----RWQSCEALRVMAKIMRECWYANGAARLT 323 (342)
T ss_dssp TTBCCCCCCTTTTTSCSSCCHHHHHHHHTT--------SCCCCCCCG-----GGGTSHHHHHHHHHHHHHCCSSGGGSCC
T ss_pred CCcccccccCccccCcCcccHHHHHHHHHH--------HHhCCCCcc-----cccchhHHHHHHHHHHHHhccChhhCCC
Confidence 77876554444444444332211 111111111 1123467778999999999999999999
Q ss_pred HHHHHHHHHHHHHhh
Q 047768 990 MTDVVVKLCHARQNF 1004 (1009)
Q Consensus 990 ~~evl~~L~~i~~~~ 1004 (1009)
+.||++.|+.+.++.
T Consensus 324 ~~~i~~~L~~i~~~~ 338 (342)
T 1b6c_B 324 ALRIKKTLSQLSQQE 338 (342)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHh
Confidence 999999999998764
No 139
>3f3z_A Calcium/calmodulin-dependent protein kinase with domain and 4 calmodulin like EF...; calcium dependent protein kinase; HET: SEP DRK; 1.84A {Cryptosporidium parvum iowa II} PDB: 2qg5_A*
Probab=100.00 E-value=7.4e-38 Score=340.03 Aligned_cols=251 Identities=25% Similarity=0.266 Sum_probs=204.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||+||+|.++.++..||+|++........+.+.+|++++++++||||+++++++.. ....+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~a~k~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 82 (277)
T 3f3z_A 8 NQYYTLENTIGRGSWGEVKIAVQKGTRIRRAAKKIPKYFVEDVDRFKQEIEIMKSLDHPNIIRLYETFED-----NTDIY 82 (277)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSEEE
T ss_pred hhhEEeeeEEeecCCEEEEEEEeCCCCcEEEEEeehhhccchHHHHHHHHHHHHhCCCCCEeeEEEEEec-----CCeEE
Confidence 4579999999999999999999998999999999987666667889999999999999999999999754 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee---CCCCceEEecc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL---DHDMVAHVSDF 856 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill---~~~~~~kl~Df 856 (1009)
+||||+++++|.+++..... +++.+++.++.|++.|++|||++ +|+||||||+||++ +.++.+||+||
T Consensus 83 lv~e~~~~~~L~~~~~~~~~------~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~~l~Df 153 (277)
T 3f3z_A 83 LVMELCTGGELFERVVHKRV------FRESDAARIMKDVLSAVAYCHKL---NVAHRDLKPENFLFLTDSPDSPLKLIDF 153 (277)
T ss_dssp EEEECCCSCBHHHHHHHHCS------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECCC
T ss_pred EEEeccCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEecCCCCCcEEEEec
Confidence 99999999999999987553 89999999999999999999999 99999999999999 78899999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|++....... ......||+.|+|||++.+. ++.++||||+|+++|||++|+.||...... .....
T Consensus 154 g~~~~~~~~~---------~~~~~~~t~~y~aPE~~~~~-~~~~~Di~slG~~l~~l~~g~~p~~~~~~~-----~~~~~ 218 (277)
T 3f3z_A 154 GLAARFKPGK---------MMRTKVGTPYYVSPQVLEGL-YGPECDEWSAGVMMYVLLCGYPPFSAPTDS-----EVMLK 218 (277)
T ss_dssp TTCEECCTTS---------CBCCCCSCTTTCCHHHHTTC-BCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHH
T ss_pred ccceeccCcc---------chhccCCCCCccChHHhccc-CCchhhehhHHHHHHHHHHCCCCCCCCCHH-----HHHHH
Confidence 9998765431 22235689999999997654 899999999999999999999999753211 11111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
+...... .+... .......+.+++.+|++.||++|||+.|+++
T Consensus 219 --------~~~~~~~-~~~~~-------~~~~~~~~~~li~~~l~~dp~~R~s~~~~l~ 261 (277)
T 3f3z_A 219 --------IREGTFT-FPEKD-------WLNVSPQAESLIRRLLTKSPKQRITSLQALE 261 (277)
T ss_dssp --------HHHCCCC-CCHHH-------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHTT
T ss_pred --------HHhCCCC-CCchh-------hhcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 0000000 00000 0012346789999999999999999999986
No 140
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.6e-38 Score=373.75 Aligned_cols=348 Identities=21% Similarity=0.216 Sum_probs=242.1
Q ss_pred HHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccc
Q 047768 245 IYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNF 324 (1009)
Q Consensus 245 L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~ 324 (1009)
++.+++.++ .+|..+. ++++.|+|++|++++..|..|.++++|++|+|++|+++++.+..|.++++|+.|+|++|.
T Consensus 16 v~c~~~~l~-~ip~~~~---~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~ 91 (477)
T 2id5_A 16 VLCHRKRFV-AVPEGIP---TETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNR 91 (477)
T ss_dssp EECCSCCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred EEeCCCCcC-cCCCCCC---CCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCc
Confidence 344555555 5665443 467777777777777777778888888888888888777777666666666666666666
Q ss_pred cCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCC
Q 047768 325 LGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRL 404 (1009)
Q Consensus 325 l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l 404 (1009)
+..++. ..|.++++|++|+|++|++++..|..+..+ .+|+.|+|++|.+++..+..|.++++|+.|+|++|++
T Consensus 92 l~~~~~------~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l 164 (477)
T 2id5_A 92 LKLIPL------GVFTGLSNLTKLDISENKIVILLDYMFQDL-YNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNL 164 (477)
T ss_dssp CCSCCT------TSSTTCTTCCEEECTTSCCCEECTTTTTTC-TTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCC
T ss_pred CCccCc------ccccCCCCCCEEECCCCccccCChhHcccc-ccCCEEECCCCccceeChhhccCCCCCCEEECCCCcC
Confidence 655443 234556666666666666665555555444 3455555555555555555555555555555555555
Q ss_pred CCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhh
Q 047768 405 TGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQI 484 (1009)
Q Consensus 405 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~ 484 (1009)
++..+..|..+++|+.|+|++|.+++..+..|..+++|++|++++|.+.+.+|.......+|+
T Consensus 165 ~~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~~~~~~~~L~----------------- 227 (477)
T 2id5_A 165 TSIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRLYRLKVLEISHWPYLDTMTPNCLYGLNLT----------------- 227 (477)
T ss_dssp SSCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSCTTCCEEEEECCTTCCEECTTTTTTCCCS-----------------
T ss_pred cccChhHhcccCCCcEEeCCCCcCcEeChhhcccCcccceeeCCCCccccccCcccccCcccc-----------------
Confidence 544444555555555555555555555555555555555555555555544444443333333
Q ss_pred hhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccc
Q 047768 485 LEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIK 564 (1009)
Q Consensus 485 ~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 564 (1009)
.|++++|++++..+..|.++++|+.|+|++|.+++..+..|..+++|+.|+|++|++++..|.+|.++++|+
T Consensus 228 --------~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~ 299 (477)
T 2id5_A 228 --------SLSITHCNLTAVPYLAVRHLVYLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLR 299 (477)
T ss_dssp --------EEEEESSCCCSCCHHHHTTCTTCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCC
T ss_pred --------EEECcCCcccccCHHHhcCccccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCC
Confidence 377777777744445688899999999999999988888899999999999999999999999999999999
Q ss_pred eEcCCCcccccccccccccccccCceecccccCcccCCCCCcccCccccccccCCCcCCCCCCC
Q 047768 565 ELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGIFKNKTGFSIVGNGKLCGGLDEL 628 (1009)
Q Consensus 565 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~~ 628 (1009)
+|||++|+|++..+..|..+++|++|+|++|++.+.++..+.+.......+.++...|+.|...
T Consensus 300 ~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~c~c~~~~~~~~~~~~~~~~~~~~C~~p~~~ 363 (477)
T 2id5_A 300 VLNVSGNQLTTLEESVFHSVGNLETLILDSNPLACDCRLLWVFRRRWRLNFNRQQPTCATPEFV 363 (477)
T ss_dssp EEECCSSCCSCCCGGGBSCGGGCCEEECCSSCEECSGGGHHHHTTTTSSCCTTCCCBEEESGGG
T ss_pred EEECCCCcCceeCHhHcCCCcccCEEEccCCCccCccchHhHHhhhhccccCccCceeCCchHH
Confidence 9999999999877788999999999999999999988765544444445667788888877654
No 141
>1rdq_E PKA C-alpha, CAMP-dependent protein kinase, alpha-catalytic SU; CAMP-dependent protein kinase,catalytic mechanism, ATP hydro two nucleotide states; HET: TPO SEP ADP ATP; 1.26A {Mus musculus} SCOP: d.144.1.7 PDB: 2erz_E* 3fjq_E* 1bkx_A* 1atp_E* 1fmo_E* 1j3h_A* 1jlu_E* 1bx6_A* 1re8_A* 1rej_A* 1rek_A* 2cpk_E* 2qcs_A* 2qvs_E* 1l3r_E* 3idb_A* 3idc_A* 3o7l_D* 3ow3_A* 3tnp_C* ...
Probab=100.00 E-value=3.8e-38 Score=352.71 Aligned_cols=246 Identities=21% Similarity=0.241 Sum_probs=203.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|+++.+|+.||||+++... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 40 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~ 114 (350)
T 1rdq_E 40 LDQFDRIKTLGTGSFGRVMLVKHKESGNHYAMKILDKQKVVKLKQIEHTLNEKRILQAVNFPFLVKLEFSFKD-----NS 114 (350)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred HHHCEEEEEeecCcCcEEEEEEECCCCCEEEEEEEEhHHhccHHHHHHHHHHHHHHHhCCCCCCCeEEEEEEc-----CC
Confidence 368999999999999999999999899999999996442 2345678899999999999999999998654 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++..... +++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 115 ~~~lv~e~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NIll~~~g~~kL~DF 185 (350)
T 1rdq_E 115 NLYMVMEYVAGGEMFSHLRRIGR------FSEPHARFYAAQIVLTFEYLHSL---DLIYRDLKPENLLIDQQGYIQVTDF 185 (350)
T ss_dssp EEEEEEECCTTCBHHHHHHHHCC------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCC
T ss_pred EEEEEEcCCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CcccccCccceEEECCCCCEEEccc
Confidence 78999999999999999987543 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||.... .......
T Consensus 186 g~a~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~-----~~~~~~~ 249 (350)
T 1rdq_E 186 GFAKRVKGR-----------TWTLCGTPEALAPEIILSKGYNKAVDWWALGVLIYEMAAGYPPFFADQ-----PIQIYEK 249 (350)
T ss_dssp TTCEECSSC-----------BCCCEECGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHHH
T ss_pred ccceeccCC-----------cccccCCccccCHHHhcCCCCCCcCCEecccHhHhHHhhCCCCCCCCC-----HHHHHHH
Confidence 999866432 224579999999999999999999999999999999999999997432 1111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCC-----HHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRME-----MTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt-----~~evl~ 995 (1009)
.... ... .+ .....++.+++.+|++.||++||+ ++|+++
T Consensus 250 i~~~--------~~~-~p-----------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~~ei~~ 293 (350)
T 1rdq_E 250 IVSG--------KVR-FP-----------SHFSSDLKDLLRNLLQVDLTKRFGNLKNGVNDIKN 293 (350)
T ss_dssp HHHC--------CCC-CC-----------TTCCHHHHHHHHHHSCSCTTTCTTSSTTTTHHHHT
T ss_pred HHcC--------CCC-CC-----------CCCCHHHHHHHHHHhhcCHHhccCCccCCHHHHHh
Confidence 1111 000 00 012345789999999999999998 777764
No 142
>3lxp_A Non-receptor tyrosine-protein kinase TYK2; JAK3, inflammation, cancer, PAN inhibitor, ATP-binding nucleotide-binding, phosphoprotein, SH2 domain; HET: PTR IZA; 1.65A {Homo sapiens} PDB: 3lxn_A* 3nz0_A* 3nyx_A* 4e20_A* 4e1z_A*
Probab=100.00 E-value=4.7e-39 Score=356.70 Aligned_cols=278 Identities=25% Similarity=0.353 Sum_probs=211.8
Q ss_pred cCccCCcccccCCceEEEEEEe----cCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 702 EFSSSNTIGRGSFGFVYKGVLH----ENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 702 ~~~~~~~lg~G~~g~V~~~~~~----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.|.+.+.||+|+||+||+|.+. .+++.||||+++.... ...+.+.+|++++++++||||+++++++... +..
T Consensus 32 ~~~~~~~lG~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~ 108 (318)
T 3lxp_A 32 YLKKIRDLGEGHFGKVSLYCYDPTNDGTGEMVAVKALKADAGPQHRSGWKQEIDILRTLYHEHIIKYKGCCEDA---GAA 108 (318)
T ss_dssp GEEEEEEEEECSSEEEEEEEECSCC--CCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET---TTT
T ss_pred HHhhhheecCCCCeEEEEEEEccCCCCCCcEEEEEEeccccChHHHHHHHHHHHHHHhCCCcchhhEEEEEecC---CCc
Confidence 3488999999999999888763 4788999999975432 2346789999999999999999999998642 346
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++.... +++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 109 ~~~lv~e~~~~~~L~~~l~~~~-------~~~~~~~~i~~~l~~~l~~LH~~---~ivH~Dikp~Nil~~~~~~~kl~Df 178 (318)
T 3lxp_A 109 SLQLVMEYVPLGSLRDYLPRHS-------IGLAQLLLFAQQICEGMAYLHAQ---HYIHRDLAARNVLLDNDRLVKIGDF 178 (318)
T ss_dssp EEEEEECCCTTCBHHHHGGGSC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCG
T ss_pred eEEEEEecccCCcHHHHHhhCC-------CCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEEcCCCCEEECCc
Confidence 7899999999999999997653 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH-H
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA-K 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~-~ 935 (1009)
|+++....... .........||..|+|||++.+..++.++||||+|+++|||++|+.||............+. .
T Consensus 179 g~a~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~ll~g~~p~~~~~~~~~~~~~~~~~ 253 (318)
T 3lxp_A 179 GLAKAVPEGHE-----YYRVREDGDSPVFWYAPECLKEYKFYYASDVWSFGVTLYELLTHCDSSQSPPTKFLELIGIAQG 253 (318)
T ss_dssp GGCEECCTTCS-----EEEC---CCCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHHHHHHHHCSCCH
T ss_pred ccccccccccc-----ccccccCCCCCceeeChHHhcCCCCCcHHHHHHHHHHHHHHHhCCCcccccchhhhhhhccccc
Confidence 99987754321 11122335578899999999999999999999999999999999999864321100000000 0
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhcC
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLGQ 1007 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~~ 1007 (1009)
......+.+.++..... .....+..++.+++.+||+.||++|||+.|+++.|+++.+.+..+
T Consensus 254 ~~~~~~~~~~~~~~~~~----------~~~~~~~~~l~~li~~~l~~dP~~Rps~~ell~~L~~l~~~~~~~ 315 (318)
T 3lxp_A 254 QMTVLRLTELLERGERL----------PRPDKCPAEVYHLMKNCWETEASFRPTFENLIPILKTVHEKYQGQ 315 (318)
T ss_dssp HHHHHHHHHHHHTTCCC----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHHC-
T ss_pred chhHHHHHHHHhcccCC----------CCCccccHHHHHHHHHHcCCCcccCcCHHHHHHHHHHHHHhhccC
Confidence 00000111111111110 111233456889999999999999999999999999999998764
No 143
>2v62_A Serine/threonine-protein kinase VRK2; transferase, ATP-binding, membrane, nucleotide-binding, TRAN; 1.7A {Homo sapiens}
Probab=100.00 E-value=1.9e-38 Score=356.07 Aligned_cols=273 Identities=19% Similarity=0.245 Sum_probs=204.8
Q ss_pred hccCccCCcccccCCceEEEEEEec---CCeEEEEEEeeccccc-----------chHHHHHHHHHHHhcCCCCcceEEe
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHE---NGMLVAVKVINLEQKG-----------GSKSFAAECEALRSIRHRNLIKIVT 765 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~~-----------~~~~~~~E~~~l~~l~h~niv~l~~ 765 (1009)
.++|.+.+.||+|+||+||+|.+.. ++..||||++...... ....+.+|+..++.++||||+++++
T Consensus 36 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~e~~~~~~~~~~~~~~e~~~~~~l~h~ni~~~~~ 115 (345)
T 2v62_A 36 GNQWVLGKKIGSGGFGLIYLAFPTNKPEKDARHVVKVEYQENGPLFSELKFYQRVAKKDCIKKWIERKQLDYLGIPLFYG 115 (345)
T ss_dssp SCEEEEEEEC------CEEEEEESSSCGGGCCEEEEEEECC-CHHHHHHHHHHHHCCHHHHHHHHHHHTCSCCCCCCEEE
T ss_pred CceEEEEeeEeecCCeEEEEEEecCCCCccceEEEEeeecCCcchHHHHHHHHHHhhhHHHHHHHhhccccccCcceeec
Confidence 3579999999999999999999976 7889999998644321 1234667888999999999999999
Q ss_pred eeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee
Q 047768 766 ICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL 845 (1009)
Q Consensus 766 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill 845 (1009)
++... +.+....++||||+ +++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||++
T Consensus 116 ~~~~~-~~~~~~~~lv~e~~-~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll 184 (345)
T 2v62_A 116 SGLTE-FKGRSYRFMVMERL-GIDLQKISGQNG------TFKKSTVLQLGIRMLDVLEYIHEN---EYVHGDIKAANLLL 184 (345)
T ss_dssp EEEEE-SSSCEEEEEEEECE-EEEHHHHCBGGG------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEE
T ss_pred ccccc-cCCCcEEEEEEecc-CCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCcCHHHEEE
Confidence 98763 34457889999999 999999998765 389999999999999999999999 99999999999999
Q ss_pred CCCC--ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 846 DHDM--VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 846 ~~~~--~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
+.++ .+||+|||+++.+......... .........||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 185 ~~~~~~~~kL~Dfg~a~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~ 263 (345)
T 2v62_A 185 GYKNPDQVYLADYGLSYRYCPNGNHKQY-QENPRKGHNGTIEFTSLDAHKGVALSRRSDVEILGYCMLRWLCGKLPWEQN 263 (345)
T ss_dssp ESSSTTSEEECCCTTCEESSGGGCCCCC-CCCGGGCSCSCTTTCCHHHHHTCCCCHHHHHHHHHHHHHHHHHSSCTTGGG
T ss_pred ccCCCCcEEEEeCCCceecccccccccc-hhccccccCCCccccCHHHhcCCCCCchhhHHHHHHHHHHHHhCCCCcccc
Confidence 9887 9999999999877543211100 112224467999999999999999999999999999999999999999643
Q ss_pred ccCCccHHHHHHH---hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Q 047768 924 FNEGLTLHEFAKR---ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHA 1000 (1009)
Q Consensus 924 ~~~~~~~~~~~~~---~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i 1000 (1009)
............. ..+........ ...++.++.+++.+||+.||++||++.||++.|+..
T Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~ 326 (345)
T 2v62_A 264 LKDPVAVQTAKTNLLDELPQSVLKWAP-----------------SGSSCCEIAQFLVCAHSLAYDEKPNYQALKKILNPH 326 (345)
T ss_dssp TTCHHHHHHHHHHHHHTTTHHHHHHSC-----------------TTSCCHHHHHHHHHHHTCCTTCCCCHHHHHHHHCTT
T ss_pred ccccHHHHHHHHhhcccccHHHHhhcc-----------------ccccHHHHHHHHHHHhhcCcccCCCHHHHHHHHhcc
Confidence 3222111111111 11111111110 012334688999999999999999999999999764
Q ss_pred H
Q 047768 1001 R 1001 (1009)
Q Consensus 1001 ~ 1001 (1009)
.
T Consensus 327 ~ 327 (345)
T 2v62_A 327 G 327 (345)
T ss_dssp C
T ss_pred C
Confidence 3
No 144
>3dls_A PAS domain-containing serine/threonine-protein KI; PAS kinase, PASK, protein kinase, drug discovery, ATP-bindin kinase, nucleotide-binding; HET: ADP; 2.30A {Homo sapiens}
Probab=100.00 E-value=2.7e-38 Score=352.59 Aligned_cols=243 Identities=26% Similarity=0.371 Sum_probs=201.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--------cchHHHHHHHHHHHhcCCCCcceEEeeeeccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--------GGSKSFAAECEALRSIRHRNLIKIVTICSSID 771 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 771 (1009)
.++|.+.+.||+|+||+||+|+++.+++.||||+++.... ...+.+.+|++++++++||||+++++++..
T Consensus 23 ~~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~Iv~~~~~~~~-- 100 (335)
T 3dls_A 23 SQKYSTMSPLGSGAFGFVWTAVDKEKNKEVVVKFIKKEKVLEDCWIEDPKLGKVTLEIAILSRVEHANIIKVLDIFEN-- 100 (335)
T ss_dssp HHHEEEEEECSSSSSCSEEEEEETTTTEEEEEEEEESTTSCTTSEEEETTTEEEEHHHHHHTTCCCTTBCCEEEEEEC--
T ss_pred ccceEEEeEEEecCCEEEEEEEECCCCcEEEEEEEehhhcccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEee--
Confidence 4689999999999999999999999999999999975432 123467789999999999999999999754
Q ss_pred cCCCceEEEEEeccCCC-CHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc
Q 047768 772 FKGVDFKALVYEYMQNG-SLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV 850 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~g-sL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~ 850 (1009)
....++||||+.+| +|.+++..... +++..++.++.|++.||+|||++ +|+||||||+||+++.++.
T Consensus 101 ---~~~~~lv~e~~~~g~~l~~~~~~~~~------l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~ 168 (335)
T 3dls_A 101 ---QGFFQLVMEKHGSGLDLFAFIDRHPR------LDEPLASYIFRQLVSAVGYLRLK---DIIHRDIKDENIVIAEDFT 168 (335)
T ss_dssp ---SSEEEEEEECCTTSCBHHHHHHTCCC------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSC
T ss_pred ---CCEEEEEEEeCCCCccHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHhC---CeEEeccCHHHEEEcCCCc
Confidence 36789999999777 99999987653 89999999999999999999999 9999999999999999999
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCcc
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLT 929 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~ 929 (1009)
+||+|||+++...... ......||+.|+|||++.+..+ +.++|||||||++|||++|+.||.....
T Consensus 169 ~kL~Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~---- 235 (335)
T 3dls_A 169 IKLIDFGSAAYLERGK---------LFYTFCGTIEYCAPEVLMGNPYRGPELEMWSLGVTLYTLVFEENPFCELEE---- 235 (335)
T ss_dssp EEECCCTTCEECCTTC---------CBCEECSCGGGCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSCSSGGG----
T ss_pred EEEeecccceECCCCC---------ceeccCCCccccChhhhcCCCCCCCcccchhHHHHHHHHHhCCCchhhHHH----
Confidence 9999999998765431 2234568999999999988887 8899999999999999999999964211
Q ss_pred HHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 930 LHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 930 ~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
........ + .....++.+++.+|++.||++|||+.|+++.
T Consensus 236 ---------------~~~~~~~~-~-----------~~~~~~l~~li~~~L~~dP~~Rps~~ell~h 275 (335)
T 3dls_A 236 ---------------TVEAAIHP-P-----------YLVSKELMSLVSGLLQPVPERRTTLEKLVTD 275 (335)
T ss_dssp ---------------GTTTCCCC-S-----------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHHC
T ss_pred ---------------HHhhccCC-C-----------cccCHHHHHHHHHHccCChhhCcCHHHHhcC
Confidence 11111100 0 0123457899999999999999999999874
No 145
>3llt_A Serine/threonine kinase-1, pflammer; lammer kinase, malaria, structural GE structural genomics consortium, SGC, transferase; HET: ANP; 2.50A {Plasmodium falciparum 3D7}
Probab=100.00 E-value=1.1e-38 Score=360.60 Aligned_cols=214 Identities=27% Similarity=0.349 Sum_probs=182.8
Q ss_pred cccCCccCHHHHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-----CCC
Q 047768 685 EQQFPMVSYKELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-----HRN 759 (1009)
Q Consensus 685 ~~~~~~~~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----h~n 759 (1009)
+.....+++++.....++|.+.++||+|+||+||+|++..+++.||||+++.. ....+.+..|+++++.++ |||
T Consensus 19 ~~~~~~~~~~~g~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~-~~~~~~~~~e~~~l~~l~~~~~~h~~ 97 (360)
T 3llt_A 19 DDEIVHFSWKKGMLLNNAFLVIRKMGDGTFGRVLLCQHIDNKKYYAVKVVRNI-KKYTRSAKIEADILKKIQNDDINNNN 97 (360)
T ss_dssp -CGGGSCCCCTTCEETTTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECSC-HHHHHHHHHHHHHHHHTCCCSTTGGG
T ss_pred CccceeeeeecceEecCEEEEEEEEcccCCeEEEEEEECCCCeEEEEEEeccc-hhhhhhhHHHHHHHHHhcccCCCCCC
Confidence 33445556666666678999999999999999999999989999999998632 223456788999999986 999
Q ss_pred cceEEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCC
Q 047768 760 LIKIVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLK 839 (1009)
Q Consensus 760 iv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk 839 (1009)
|+++++++... ...++||||+ +++|.+++...... .+++.+++.++.|++.||+|||++ +|||||||
T Consensus 98 iv~~~~~~~~~-----~~~~lv~e~~-~~~L~~~~~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlk 164 (360)
T 3llt_A 98 IVKYHGKFMYY-----DHMCLIFEPL-GPSLYEIITRNNYN----GFHIEDIKLYCIEILKALNYLRKM---SLTHTDLK 164 (360)
T ss_dssp BCCEEEEEEET-----TEEEEEECCC-CCBHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCS
T ss_pred eecccceeeEC-----CeeEEEEcCC-CCCHHHHHHhcCCC----CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCC
Confidence 99999997653 6789999999 99999999876532 489999999999999999999999 99999999
Q ss_pred CCceeeCC-------------------------CCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC
Q 047768 840 PSNVLLDH-------------------------DMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG 894 (1009)
Q Consensus 840 ~~Nill~~-------------------------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 894 (1009)
|+|||++. ++.+||+|||+++..... .....||+.|+|||++.+
T Consensus 165 p~NIll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DFG~a~~~~~~-----------~~~~~gt~~y~aPE~~~~ 233 (360)
T 3llt_A 165 PENILLDDPYFEKSLITVRRVTDGKKIQIYRTKSTGIKLIDFGCATFKSDY-----------HGSIINTRQYRAPEVILN 233 (360)
T ss_dssp GGGEEESCTTCCEEEEEEECTTTCCEEEEEEESCCCEEECCCTTCEETTSC-----------CCSCCSCGGGCCHHHHTT
T ss_pred cccEEEccccccccccchhcccccccccccccCCCCEEEEeccCceecCCC-----------CcCccCcccccCcHHHcC
Confidence 99999975 789999999999864432 123568999999999999
Q ss_pred CCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 895 GEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 895 ~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
..++.++||||+||++|||++|+.||...
T Consensus 234 ~~~~~~~DiwslG~il~ell~g~~pf~~~ 262 (360)
T 3llt_A 234 LGWDVSSDMWSFGCVLAELYTGSLLFRTH 262 (360)
T ss_dssp CCCCTTHHHHHHHHHHHHHHHSSCSCCCS
T ss_pred CCCCCccchHHHHHHHHHHHHCCCCCCCC
Confidence 99999999999999999999999999753
No 146
>3p1a_A MYT1 kinase, membrane-associated tyrosine- and threonine-speci inhibitory kinase; structural genomics, structural genomics consortium, SGC; 1.70A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=347.95 Aligned_cols=245 Identities=22% Similarity=0.249 Sum_probs=192.2
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCce
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
++|++.++||+|+||+||+|+++.+++.||||++...... .......|+..+.++ +||||++++++|... ..
T Consensus 57 ~~y~~~~~LG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~l~~~~~~~-----~~ 131 (311)
T 3p1a_A 57 QSFQRLSRLGHGSYGEVFKVRSKEDGRLYAVKRSMSPFRGPKDRARKLAEVGSHEKVGQHPCCVRLEQAWEEG-----GI 131 (311)
T ss_dssp HHEEEEEEEEEETTEEEEEEEETTTSCEEEEEEESSSCCSHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TE
T ss_pred hheeeeheeccCCCeEEEEEEECCCCeEEEEEEecccccChHHHHHHHHHHHHHHHhcCCCcEEEEEEEEEeC-----CE
Confidence 5799999999999999999999989999999998543322 223455566666555 899999999997653 77
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+ +++|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kl~DFG 202 (311)
T 3p1a_A 132 LYLQTELC-GPSLQQHCEAWGA-----SLPEAQVWGYLRDTLLALAHLHSQ---GLVHLDVKPANIFLGPRGRCKLGDFG 202 (311)
T ss_dssp EEEEEECC-CCBHHHHHHHHCS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECGGGCEEECCCT
T ss_pred EEEEEecc-CCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEecCCCCHHHEEECCCCCEEEccce
Confidence 89999999 7799999887654 399999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
+++...... ......||+.|+|||++.+ .++.++|||||||++|||++|..|+... ..+.
T Consensus 203 ~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~el~~g~~~~~~~-------~~~~--- 262 (311)
T 3p1a_A 203 LLVELGTAG---------AGEVQEGDPRYMAPELLQG-SYGTAADVFSLGLTILEVACNMELPHGG-------EGWQ--- 262 (311)
T ss_dssp TCEECC---------------CCCCCGGGCCGGGGGT-CCSTHHHHHHHHHHHHHHHHTCCCCSSH-------HHHH---
T ss_pred eeeecccCC---------CCcccCCCccccCHhHhcC-CCCchhhHHHHHHHHHHHHhCCCCCCCc-------cHHH---
Confidence 998765421 2223568999999998876 7899999999999999999997765421 1110
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.+......... ......++.+++.+|++.||++|||++|+++
T Consensus 263 ------~~~~~~~~~~~----------~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~ 304 (311)
T 3p1a_A 263 ------QLRQGYLPPEF----------TAGLSSELRSVLVMMLEPDPKLRATAEALLA 304 (311)
T ss_dssp ------HHTTTCCCHHH----------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred ------HHhccCCCccc----------ccCCCHHHHHHHHHHcCCChhhCcCHHHHHh
Confidence 11111110000 0122356889999999999999999999975
No 147
>3f66_A Hepatocyte growth factor receptor; C-Met, protein kinase, quinoxaline, alternative splicing, ATP-binding, chromosomal rearrangement; HET: IHX; 1.40A {Homo sapiens} PDB: 3i5n_A* 3u6h_A* 3u6i_A* 4deg_A* 4deh_A* 4dei_A* 3ccn_A* 2rfn_A* 2rfs_A* 3cd8_A* 3efj_A* 3efk_A* 3lq8_A* 3zxz_A* 2wkm_A* 2wgj_A* 3zze_A* 4aoi_A* 4ap7_A* 3q6w_A* ...
Probab=100.00 E-value=4.3e-38 Score=345.89 Aligned_cols=268 Identities=25% Similarity=0.412 Sum_probs=207.3
Q ss_pred hccCccCCcccccCCceEEEEEEecC---CeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHEN---GMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~---~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
..+|.+.+.||+|+||+||+|++..+ ...||||+++.... ...+.+.+|++++++++||||++++++|.. ..
T Consensus 24 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~avk~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~ 99 (298)
T 3f66_A 24 SLIVHFNEVIGRGHFGCVYHGTLLDNDGKKIHCAVKSLNRITDIGEVSQFLTEGIIMKDFSHPNVLSLLGICLR----SE 99 (298)
T ss_dssp GEEEEEEEEEEEETTEEEEEEEEC-----CEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECC----SS
T ss_pred ceehhhcceeeecCCceEEEEEEecCCCceeEEEEEecccCCCHHHHHHHHHHHHHHHhCCCCCEeeeeeEEEc----CC
Confidence 35688889999999999999997533 34689998864322 234678899999999999999999998643 23
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 100 ~~~~~v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~ql~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~D 171 (298)
T 3f66_A 100 GSPLVVLPYMKHGDLRNFIRNETH-----NPTVKDLIGFGLQVAKGMKYLASK---KFVHRDLAARNCMLDEKFTVKVAD 171 (298)
T ss_dssp SCCEEEEECCTTCBHHHHHHCTTC-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECS
T ss_pred CceEEEEeCCCCCCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCchheEEECCCCCEEECc
Confidence 567899999999999999986543 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhC-CCCCcccccCCccHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTR-RRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg-~~p~~~~~~~~~~~~~~~ 934 (1009)
||+++....... ..........||+.|+|||.+.+..++.++||||+|+++|||++| ..||...... ......
T Consensus 172 fg~a~~~~~~~~----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~~~~~--~~~~~~ 245 (298)
T 3f66_A 172 FGLARDMYDKEY----YSVHNKTGAKLPVKWMALESLQTQKFTTKSDVWSFGVLLWELMTRGAPPYPDVNTF--DITVYL 245 (298)
T ss_dssp CGGGCCCSCGGG----CBC-----CCBCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTSCTT--THHHHH
T ss_pred ccccccccccch----hccccccCCCCCccccChHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCCccCCHH--HHHHHH
Confidence 999987654321 111223345688999999999999999999999999999999995 5555432221 111111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhcC
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLGQ 1007 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~~ 1007 (1009)
... ..... +..++..+.+++.+|++.||++|||+.|+++.|+++.+.+.++
T Consensus 246 ~~~-----------~~~~~-----------~~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~~~~ 296 (298)
T 3f66_A 246 LQG-----------RRLLQ-----------PEYCPDPLYEVMLKCWHPKAEMRPSFSELVSRISAIFSTFIGE 296 (298)
T ss_dssp HTT-----------CCCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHTSCCS
T ss_pred hcC-----------CCCCC-----------CccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhhccC
Confidence 110 00000 0112345789999999999999999999999999999988765
No 148
>4e5w_A Tyrosine-protein kinase JAK1; kinase domain, transferase-transferase inhibit complex; HET: PTR 0NT; 1.86A {Homo sapiens} PDB: 4e4l_A* 4e4n_A* 4ehz_A* 4ei4_A* 4fk6_A* 3eyg_A* 3eyh_A*
Probab=100.00 E-value=2.7e-38 Score=348.25 Aligned_cols=270 Identities=24% Similarity=0.359 Sum_probs=207.4
Q ss_pred hccCccCCcccccCCceEEEEEE----ecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVL----HENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
.++|++.+.||+|+||.||+|++ ..+++.||||+++.... ...+.+.+|++++++++||||+++++++... +
T Consensus 20 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~---~ 96 (302)
T 4e5w_A 20 KRFLKRIRDLGEGHFGKVELCRYDPEGDNTGEQVAVKSLKPESGGNHIADLKKEIEILRNLYHENIVKYKGICTED---G 96 (302)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEECTTSSSCSEEEEEEEEC-----CCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----
T ss_pred hhhhhhhhccCCCCceEEEEEEEccccCccCeEEEEEEecccccchhHHHHHHHHHHHHhCCCCCeeeeeeEEecC---C
Confidence 34688899999999999999994 46789999999974432 3357899999999999999999999997642 2
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
....++||||+++|+|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 97 ~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~ 168 (302)
T 4e5w_A 97 GNGIKLIMEFLPSGSLKEYLPKNKN-----KINLKQQLKYAVQICKGMDYLGSR---QYVHRDLAARNVLVESEHQVKIG 168 (302)
T ss_dssp -CCEEEEEECCTTCBHHHHHHHHTT-----TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEEC
T ss_pred CceEEEEEEeCCCCcHHHHHHhccc-----cCCHHHHHHHHHHHHHHHHHhhcC---CcccCCCchheEEEcCCCCEEEC
Confidence 3567899999999999999976543 389999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++....... .........||..|+|||++.+..++.++||||+|+++|||++|+.|+..... ...
T Consensus 169 Dfg~~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~------~~~ 237 (302)
T 4e5w_A 169 DFGLTKAIETDKE-----YYTVKDDRDSPVFWYAPECLMQSKFYIASDVWSFGVTLHELLTYCDSDSSPMA------LFL 237 (302)
T ss_dssp CCTTCEECCTTCC-----EEECCCCTTCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCGGGSHHH------HHH
T ss_pred cccccccccCCCc-----ceeccCCCCCCccccCCeeecCCCCCcchhHHHHHHHHHHHHHccCCCcchhh------HHh
Confidence 9999987654321 11122345688899999999999999999999999999999999998653211 010
Q ss_pred HHhcc-------chhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHH
Q 047768 935 KRALP-------EKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHAR 1001 (1009)
Q Consensus 935 ~~~~~-------~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~ 1001 (1009)
....+ ..+...+.... .......+..++.+++.+||+.||.+|||+.|+++.|+++.
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~ll 301 (302)
T 4e5w_A 238 KMIGPTHGQMTVTRLVNTLKEGK----------RLPCPPNCPDEVYQLMRKCWEFQPSNRTSFQNLIEGFEALL 301 (302)
T ss_dssp HHHCSCCGGGHHHHHHHHHHTTC----------CCCCCTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHH
T ss_pred hccCCcccccCHHHHHHHHhccC----------CCCCCCCCCHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHh
Confidence 00000 00000000000 00011133456889999999999999999999999999875
No 149
>2buj_A Serine/threonine-protein kinase 16; transferase, ATP-binding, lipoprotein, myristate, PA phosphorylation; HET: STU; 2.6A {Homo sapiens}
Probab=100.00 E-value=1.8e-38 Score=352.29 Aligned_cols=280 Identities=20% Similarity=0.252 Sum_probs=213.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|+...+++.||||++........+.+.+|++++++++||||+++++++... .......+
T Consensus 28 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~~ 106 (317)
T 2buj_A 28 NKHYLFIQKLGEGGFSYVDLVEGLHDGHFYALKRILCHEQQDREEAQREADMHRLFNHPNILRLVAYCLRE-RGAKHEAW 106 (317)
T ss_dssp TEEEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHTCCCTTBCCCCEEEEEE-ETTEEEEE
T ss_pred CeEEEEEEEecCCCCeEEEEEEecCCCcEEEEEEEecCCHHHHHHHHHHHHHHhhcCCCCeeeEEEEEEec-cCCCceeE
Confidence 46899999999999999999999889999999998765555567889999999999999999999998642 22345789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++|+|.+++...... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 107 lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~dfg~~ 181 (317)
T 2buj_A 107 LLLPFFKRGTLWNEIERLKDK--GNFLTEDQILWLLLGICRGLEAIHAK---GYAHRDLKPTNILLGDEGQPVLMDLGSM 181 (317)
T ss_dssp EEEECCTTCBHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCCSSC
T ss_pred EEEEeCCCCcHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEcCCCCEEEEecCcc
Confidence 999999999999999863221 12489999999999999999999999 9999999999999999999999999998
Q ss_pred cccCCCCCCCcc-ccCCccccccccccccCccccCCCC---CCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 860 KFLSASPLGNVV-ETPSSSIGVKGTIGYVAPEYGLGGE---ASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 860 ~~~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~---~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
+........... ..........||+.|+|||++.+.. ++.++||||||+++|||++|+.||...............
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~~~~~~~~~~ 261 (317)
T 2buj_A 182 NQACIHVEGSRQALTLQDWAAQRCTISYRAPELFSVQSHCVIDERTDVWSLGCVLYAMMFGEGPYDMVFQKGDSVALAVQ 261 (317)
T ss_dssp EESCEEEESHHHHHHHHHHHHHHSCGGGCCGGGSSCCSEEEECTHHHHHHHHHHHHHHHHSSCTTHHHHHTTSCHHHHHH
T ss_pred hhcccccccccccccccccccccCCcccCCHhHhccCCCcCCCchhhHHHHHHHHHHHHhCCCChhhhhcccchhhHHhh
Confidence 765421100000 0000112345799999999987654 689999999999999999999999753332222222111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhcC
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLGQ 1007 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~~ 1007 (1009)
... ..+ ....+..++.+++.+||+.||.+|||+.|+++.|+.+....+.+
T Consensus 262 ~~~-----------~~~-----------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~L~~~~~~~~~~ 311 (317)
T 2buj_A 262 NQL-----------SIP-----------QSPRHSSALWQLLNSMMTVDPHQRPHIPLLLSQLEALQPPAPGQ 311 (317)
T ss_dssp CC-------------CC-----------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHTCCCCCC-
T ss_pred ccC-----------CCC-----------ccccCCHHHHHHHHHHhhcChhhCCCHHHHHHHhhhcCCCCCCC
Confidence 100 000 00122346889999999999999999999999999887665544
No 150
>1mqb_A Ephrin type-A receptor 2; tyrosine protein kinase, transferase; HET: ANP; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.8e-38 Score=351.57 Aligned_cols=263 Identities=29% Similarity=0.458 Sum_probs=201.3
Q ss_pred ccCccCCcccccCCceEEEEEEecCC----eEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENG----MLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~----~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
++|.+.+.||+|+||+||+|.++.++ ..||||+++.... .....+.+|++++++++||||+++++++.. .
T Consensus 44 ~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~ 118 (333)
T 1mqb_A 44 SCVTRQKVIGAGEFGEVYKGMLKTSSGKKEVPVAIKTLKAGYTEKQRVDFLGEAGIMGQFSHHNIIRLEGVISK-----Y 118 (333)
T ss_dssp TTEEEEEEEEECSSSEEEEEEEEC---CCEEEEEEEEECTTCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEECS-----S
T ss_pred HHhhcccEEecCCCeEEEEEEEecCCCCccccEEEEEcCCCCCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEec-----C
Confidence 46777899999999999999987443 4699999965432 224578899999999999999999999754 3
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 119 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~D 190 (333)
T 1mqb_A 119 KPMMIITEYMENGALDKFLREKDG-----EFSVLQLVGMLRGIAAGMKYLANM---NYVHRDLAARNILVNSNLVCKVSD 190 (333)
T ss_dssp SSEEEEEECCTTEEHHHHHHHTTT-----CSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECC
T ss_pred CCcEEEEeCCCCCcHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChheEEECCCCcEEECC
Confidence 678999999999999999987543 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~ 934 (1009)
||+++........ ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||..... ....
T Consensus 191 fg~~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~~-----~~~~ 260 (333)
T 1mqb_A 191 FGLSRVLEDDPEA-----TYTTSGGKIPIRWTAPEAISYRKFTSASDVWSFGIVMWEVMTYGERPYWELSN-----HEVM 260 (333)
T ss_dssp CCC----------------------CCCGGGSCHHHHHSCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HHHH
T ss_pred CCcchhhcccccc-----ccccCCCCccccccCchhcccCCCCchhhhHHHHHHHHHHHcCCCCCcccCCH-----HHHH
Confidence 9999876543211 111223456889999999999999999999999999999999 9999964321 1111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
... .+....+. ...+..++.+++.+||+.||++||++.|+++.|+++.+...
T Consensus 261 ~~~--------~~~~~~~~-----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~~~~~~~ 312 (333)
T 1mqb_A 261 KAI--------NDGFRLPT-----------PMDCPSAIYQLMMQCWQQERARRPKFADIVSILDKLIRAPD 312 (333)
T ss_dssp HHH--------HTTCCCCC-----------CTTCBHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHSGG
T ss_pred HHH--------HCCCcCCC-----------cccCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHhcch
Confidence 111 11000000 11233467899999999999999999999999999877543
No 151
>3t9t_A Tyrosine-protein kinase ITK/TSK; kinase domain, alpha/beta, ATP binding, phosphorylation, intracellular, transferase-transferase inhibitor complex; HET: IAQ; 1.65A {Homo sapiens} PDB: 3v5l_A* 3v5j_A* 3v8t_A* 3v8w_A* 1sm2_A* 1snu_A* 1snx_A 3qgw_A* 3qgy_A* 3miy_A* 3mj1_A* 3mj2_A*
Probab=100.00 E-value=2.8e-38 Score=341.33 Aligned_cols=258 Identities=26% Similarity=0.400 Sum_probs=208.7
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|.+. +++.||||+++.... ..+.+.+|++++++++||||+++++++.. ....+
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vaiK~~~~~~~-~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 79 (267)
T 3t9t_A 7 PSELTFVQEIGSGQFGLVHLGYWL-NKDKVAIKTIREGAM-SEEDFIEEAEVMMKLSHPKLVQLYGVCLE-----QAPIC 79 (267)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTTB-CHHHHHHHHHHHHTCCCTTBCCEEEEECS-----SSSCE
T ss_pred hhheeeeeEecCCCceeEEEEEec-CCCeEEEEEccccCC-CHHHHHHHHHHHHhCCCCCEeeEEEEEcc-----CCCeE
Confidence 467889999999999999999986 688999999975432 35689999999999999999999999754 35689
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++++|.+++..... .+++..++.++.|++.|+.|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 80 lv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~dfg~~ 151 (267)
T 3t9t_A 80 LVTEFMEHGCLSDYLRTQRG-----LFAAETLLGMCLDVCEGMAYLEEA---CVIHRDLAARNCLVGENQVIKVSDFGMT 151 (267)
T ss_dssp EEECCCTTCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECGGGCEEECCTTGG
T ss_pred EEEeCCCCCcHHHHHhhCcc-----cCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEECCCCCEEEcccccc
Confidence 99999999999999987643 389999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhc
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
+...... ........+|..|+|||++.+..++.++||||+|+++|||++ |+.||.... ........
T Consensus 152 ~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~-----~~~~~~~i- 218 (267)
T 3t9t_A 152 RFVLDDQ-------YTSSTGTKFPVKWASPEVFSFSRYSSKSDVWSFGVLMWEVFSEGKIPYENRS-----NSEVVEDI- 218 (267)
T ss_dssp GGBCCHH-------HHSTTSTTCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCC-----HHHHHHHH-
T ss_pred ccccccc-------ccccccccccccccChhhhcCCCccchhchhhhHHHHHHHhccCCCCCCCCC-----HHHHHHHH-
Confidence 8654321 012223457889999999998899999999999999999999 899987432 11111111
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
........+ ..+...+.+++.+|++.||++|||++|+++.|+++.+.
T Consensus 219 -------~~~~~~~~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~L~~l~~~ 265 (267)
T 3t9t_A 219 -------STGFRLYKP-----------RLASTHVYQIMNHCWRERPEDRPAFSRLLRQLAEIAES 265 (267)
T ss_dssp -------HTTCCCCCC-----------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHC
T ss_pred -------hcCCcCCCC-----------ccCcHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhc
Confidence 000000000 01234578999999999999999999999999998764
No 152
>1fmk_A C-SRC, P60-SRC, tyrosine-protein kinase SRC; tyrosine kinase, phosphorylation, SH2, SH3, phosphotyrosine, proto-oncogene, phosphotransferase; HET: PTR; 1.50A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7 PDB: 1y57_A* 2src_A* 1ksw_A* 2ptk_A* 1yol_A* 2oiq_A* 3d7t_B* 3dqx_A* 3el7_A* 3el8_A* 3en4_A* 3en5_A* 3en6_A* 3en7_A* 3f6x_A* 3g6g_A* 3uqf_A* 3uqg_A* 4agw_A* 3oez_A* ...
Probab=100.00 E-value=9.8e-39 Score=371.11 Aligned_cols=259 Identities=27% Similarity=0.450 Sum_probs=203.2
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
..++|.+.+.||+|+||+||+|.++ .+..||||+++... ...+.+.+|+++|++++||||+++++++.. ...
T Consensus 182 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~------~~~ 253 (452)
T 1fmk_A 182 PRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPI 253 (452)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEET-TTEEEEEEECCTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSC
T ss_pred ChhHceeeeeecCCCCeEEEEEEEC-CCceEEEEEeccCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEcC------Cce
Confidence 3467888999999999999999996 46789999997543 345789999999999999999999999753 457
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++|+|.++++.... ..+++.++..++.|++.||+|||++ +|+||||||+|||++.++.+||+|||+
T Consensus 254 ~iv~e~~~~gsL~~~l~~~~~----~~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~Nill~~~~~~kl~DfG~ 326 (452)
T 1fmk_A 254 YIVTEYMSKGSLLDFLKGETG----KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGL 326 (452)
T ss_dssp EEEECCCTTCBHHHHHSHHHH----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCCCT
T ss_pred EEEehhhcCCCHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCChhhEEECCCCCEEECCCcc
Confidence 899999999999999975421 1389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... +.....
T Consensus 327 a~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwslG~~l~el~t~g~~P~~~~~~~-----~~~~~i 394 (452)
T 1fmk_A 327 ARLIEDNEY-------TARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVNR-----EVLDQV 394 (452)
T ss_dssp TC---------------------CCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-----HHHHHH
T ss_pred ceecCCCce-------ecccCCcccccccCHhHHhcCCCCccccHHhHHHHHHHHHhCCCCCCCCCCHH-----HHHHHH
Confidence 987653211 11223457889999999999999999999999999999999 99999754221 111111
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
......+ .+..++..+.+++.+||+.||++|||++++++.|+.+...
T Consensus 395 --------~~~~~~~-----------~~~~~~~~l~~li~~cl~~dP~~Rpt~~~l~~~L~~~~~~ 441 (452)
T 1fmk_A 395 --------ERGYRMP-----------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFTS 441 (452)
T ss_dssp --------HTTCCCC-----------CCTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTTTSC
T ss_pred --------HcCCCCC-----------CCCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhcc
Confidence 0000000 1113445688999999999999999999999999877543
No 153
>2vd5_A DMPK protein; serine/threonine-protein kinase, kinase, transferase, ATP-BI nucleotide-binding, cardiac contractility, muscle different; HET: BI8; 2.80A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=358.21 Aligned_cols=261 Identities=23% Similarity=0.273 Sum_probs=203.5
Q ss_pred HHHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeecc
Q 047768 694 KELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSI 770 (1009)
Q Consensus 694 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 770 (1009)
++.....++|.+.+.||+|+||+||+|+.+.+|+.||||+++... ....+.+.+|++++.+++||||+++++++..
T Consensus 54 ~~~~~~~~~f~~~~~lG~G~fG~V~~~~~~~~~~~vAiK~l~k~~~~~~~~~~~~~~E~~il~~~~hp~Iv~l~~~~~~- 132 (412)
T 2vd5_A 54 KEVRLQRDDFEILKVIGRGAFSEVAVVKMKQTGQVYAMKIMNKWDMLKRGEVSCFREERDVLVNGDRRWITQLHFAFQD- 132 (412)
T ss_dssp HHHSCCGGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHHHGGGCCHHHHHHHHHHSCTTTBCCEEEEEEC-
T ss_pred hhccCChhhEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEeHHHhhhHHHHHHHHHHHHHHHhcCCCCeeeEEEEEee-
Confidence 344455689999999999999999999999899999999996432 2234568899999999999999999998654
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV 850 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~ 850 (1009)
....++||||+++|+|.+++.+... .+++..++.++.|++.||+|||++ +||||||||+|||++.++.
T Consensus 133 ----~~~~~lVmE~~~gg~L~~~l~~~~~-----~l~~~~~~~~~~qi~~aL~~LH~~---giiHrDLKp~NILld~~g~ 200 (412)
T 2vd5_A 133 ----ENYLYLVMEYYVGGDLLTLLSKFGE-----RIPAEMARFYLAEIVMAIDSVHRL---GYVHRDIKPDNILLDRCGH 200 (412)
T ss_dssp ----SSEEEEEECCCCSCBHHHHHHHHSS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSC
T ss_pred ----CCEEEEEEcCCCCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeecccCHHHeeecCCCC
Confidence 3788999999999999999987543 389999999999999999999999 9999999999999999999
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccC-------CCCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL-------GGEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-------~~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
+||+|||+++....... ......+||+.|+|||++. ...++.++|||||||++|||++|+.||...
T Consensus 201 vkL~DFGla~~~~~~~~-------~~~~~~~Gt~~Y~APE~l~~~~~~~~~~~~~~~~DiwSlGvilyelltG~~Pf~~~ 273 (412)
T 2vd5_A 201 IRLADFGSCLKLRADGT-------VRSLVAVGTPDYLSPEILQAVGGGPGTGSYGPECDWWALGVFAYEMFYGQTPFYAD 273 (412)
T ss_dssp EEECCCTTCEECCTTSC-------EECSSCCSCGGGCCHHHHHHHHTCTTCSEECTHHHHHHHHHHHHHHHHSSCTTCCS
T ss_pred EEEeechhheeccCCCc-------cccceeccccCcCCHHHHhhcccCcCCCCCChHHhhhHHhHHHHHHHhCCCCCCCC
Confidence 99999999987654211 1223467999999999987 467899999999999999999999999743
Q ss_pred ccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCC---CCHHHHHH
Q 047768 924 FNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDR---MEMTDVVV 995 (1009)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~R---pt~~evl~ 995 (1009)
.. .+......... ....-+.. ......++.+++.+|++ +|.+| |+++|+++
T Consensus 274 ~~-----~~~~~~i~~~~-~~~~~p~~--------------~~~~s~~~~dli~~lL~-~p~~Rlgr~~~~ei~~ 327 (412)
T 2vd5_A 274 ST-----AETYGKIVHYK-EHLSLPLV--------------DEGVPEEARDFIQRLLC-PPETRLGRGGAGDFRT 327 (412)
T ss_dssp SH-----HHHHHHHHTHH-HHCCCC------------------CCCHHHHHHHHTTSS-CGGGCTTTTTHHHHHT
T ss_pred CH-----HHHHHHHHhcc-cCcCCCcc--------------ccCCCHHHHHHHHHHcC-ChhhcCCCCCHHHHhc
Confidence 21 11111111000 00000000 01123457799999999 99988 58888754
No 154
>2a19_B Interferon-induced, double-stranded RNA-activated kinase; transferase, protein biosynthesis, protein synthesis transferase complex; HET: TPO ANP; 2.50A {Homo sapiens} PDB: 2a1a_B*
Probab=100.00 E-value=5.4e-38 Score=342.51 Aligned_cols=258 Identities=21% Similarity=0.354 Sum_probs=207.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeecccc-------
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDF------- 772 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~------- 772 (1009)
..+|.+.+.||+|+||.||+|.+..+++.||||+++... +.+.+|++++++++||||+++++++....+
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~e~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 85 (284)
T 2a19_B 10 GMDFKEIELIGSGGFGQVFKAKHRIDGKTYVIKRVKYNN----EKAEREVKALAKLDHVNIVHYNGCWDGFDYDPETSSK 85 (284)
T ss_dssp HHHEEEEEEEECSSSCCEEEEEETTTCCEEEEEEEECCS----GGGHHHHHHHHHCCCTTBCCEEEEEEEEEEC------
T ss_pred ccccceeeeeccCCceEEEEEEEcCCCeEEEEEEecccc----HHHHHHHHHHHhCCCCCEEEEeeeEeccccCcccccc
Confidence 457999999999999999999998899999999996432 457789999999999999999998754221
Q ss_pred ----CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC
Q 047768 773 ----KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD 848 (1009)
Q Consensus 773 ----~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~ 848 (1009)
......++||||+++|+|.+++..... ..+++..++.++.|++.||.|||++ +|+||||||+||+++.+
T Consensus 86 ~~~~~~~~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~ 158 (284)
T 2a19_B 86 NSSRSKTKCLFIQMEFCDKGTLEQWIEKRRG----EKLDKVLALELFEQITKGVDYIHSK---KLINRDLKPSNIFLVDT 158 (284)
T ss_dssp ---CCEEEEEEEEECCCCSCBHHHHHHHGGG----SCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEET
T ss_pred cccccCcceEEEEEeccCCCCHHHHHhhccC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeeccCCHHHEEEcCC
Confidence 123567999999999999999986532 2489999999999999999999999 99999999999999999
Q ss_pred CceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCc
Q 047768 849 MVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGL 928 (1009)
Q Consensus 849 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~ 928 (1009)
+.+||+|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|..|+...
T Consensus 159 ~~~kl~Dfg~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~~~~~~~~----- 224 (284)
T 2a19_B 159 KQVKIGDFGLVTSLKNDG---------KRTRSKGTLRYMSPEQISSQDYGKEVDLYALGLILAELLHVCDTAFET----- 224 (284)
T ss_dssp TEEEECCCTTCEESSCCS---------CCCCCCSCCTTSCHHHHHCSCCCTHHHHHHHHHHHHHHHSCCSSHHHH-----
T ss_pred CCEEECcchhheeccccc---------cccccCCcccccChhhhccCCCcchhhhHHHHHHHHHHHhcCCcchhH-----
Confidence 999999999998765431 122346899999999999999999999999999999999999986421
Q ss_pred cHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 929 TLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
..... .+.+..+.. .....+.+++.+|++.||++|||+.|+++.++.+++....
T Consensus 225 --~~~~~--------~~~~~~~~~--------------~~~~~~~~li~~~l~~dp~~Rps~~e~l~~l~~~~~~~~~ 278 (284)
T 2a19_B 225 --SKFFT--------DLRDGIISD--------------IFDKKEKTLLQKLLSKKPEDRPNTSEILRTLTVWKKSPEK 278 (284)
T ss_dssp --HHHHH--------HHHTTCCCT--------------TSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHTC----
T ss_pred --HHHHH--------Hhhcccccc--------------cCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHhhCCCc
Confidence 11111 011111100 1123467899999999999999999999999988776544
No 155
>3cc6_A Protein tyrosine kinase 2 beta; focal adhesion kinase, structural genomics, structural genom consortium, SGC, ATP-binding, membrane; 1.60A {Homo sapiens} PDB: 3fzs_A* 3et7_A 3fzo_A* 3fzr_A* 3fzp_A* 3fzt_A* 3h3c_A*
Probab=100.00 E-value=7.1e-38 Score=340.91 Aligned_cols=261 Identities=21% Similarity=0.354 Sum_probs=205.8
Q ss_pred HhccCccCCcccccCCceEEEEEEec---CCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHE---NGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
..++|.+.+.||+|+||+||+|++.. ++..||||+++.... ...+.+.+|++++++++||||+++++++..
T Consensus 10 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----- 84 (281)
T 3cc6_A 10 AREDVVLNRILGEGFFGEVYEGVYTNHKGEKINVAVKTCKKDCTLDNKEKFMSEAVIMKNLDHPHIVKLIGIIEE----- 84 (281)
T ss_dssp CGGGEEEEEEEEECSSSEEEEEEEECTTCCEEEEEEEECCTTSCHHHHHHHHHHHHHHHHHCCTTBCCEEEEECS-----
T ss_pred cccceEEEEEEEecCCeeEEEeEEcCCCCCcceEEEEecccccCchHHHHHHHHHHHHHhCCCCCcceEEEEEcC-----
Confidence 34689999999999999999999763 235699999865422 235678999999999999999999998643
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
...++||||+++++|.+++..... .+++..++.++.|++.||.|||++ +|+||||||+||+++.++.+||+
T Consensus 85 -~~~~~v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~ 155 (281)
T 3cc6_A 85 -EPTWIIMELYPYGELGHYLERNKN-----SLKVLTLVLYSLQICKAMAYLESI---NCVHRDIAVRNILVASPECVKLG 155 (281)
T ss_dssp -SSCEEEEECCTTCBHHHHHHHHTT-----TCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEEETTEEEEC
T ss_pred -CCCEEEEecCCCCCHHHHHHhccc-----cCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCccceEEECCCCcEEeC
Confidence 345899999999999999987653 389999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 933 (1009)
|||+++....... .......+|+.|+|||++.+..++.++||||||+++|||++ |+.||....... ....
T Consensus 156 Dfg~~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~llt~g~~p~~~~~~~~--~~~~ 226 (281)
T 3cc6_A 156 DFGLSRYIEDEDY-------YKASVTRLPIKWMSPESINFRRFTTASDVWMFAVCMWEILSFGKQPFFWLENKD--VIGV 226 (281)
T ss_dssp CCCGGGCC----------------CCCCCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCTTTTSCGGG--HHHH
T ss_pred ccCCCcccccccc-------cccccCCCCcceeCchhhccCCCCchhccHHHHHHHHHHHhCCCCCcccCChHH--HHHH
Confidence 9999987654321 11223457889999999998999999999999999999998 999997433221 1111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
...... ...+ ..+...+.+++.+|++.||++|||+.|+++.|+.+.+.-
T Consensus 227 ~~~~~~-----------~~~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~ell~~L~~~~~~~ 275 (281)
T 3cc6_A 227 LEKGDR-----------LPKP-----------DLCPPVLYTLMTRCWDYDPSDRPRFTELVCSLSDVYQME 275 (281)
T ss_dssp HHHTCC-----------CCCC-----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HhcCCC-----------CCCC-----------CCCCHHHHHHHHHHccCCchhCcCHHHHHHHHHHHHHhh
Confidence 111000 0000 112345789999999999999999999999999887653
No 156
>2ac3_A MAP kinase-interacting serine/threonine kinase 2; DFD motif, transferase; 2.10A {Homo sapiens} PDB: 2hw7_A* 2ac5_A* 2hw6_A
Probab=100.00 E-value=7.8e-38 Score=346.92 Aligned_cols=272 Identities=21% Similarity=0.272 Sum_probs=198.2
Q ss_pred ccCccC-CcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSS-NTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
+.|.+. +.||+|+||+||+|++..+++.||||+++.........+.+|++++.++ +||||+++++++... ...
T Consensus 12 ~~y~i~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~~~~h~~i~~~~~~~~~~-----~~~ 86 (316)
T 2ac3_A 12 DVYQLQEDVLGEGAHARVQTCINLITSQEYAVKIIEKQPGHIRSRVFREVEMLYQCQGHRNVLELIEFFEEE-----DRF 86 (316)
T ss_dssp TSCEECCCCCCCCSSEEEEEEECSSSCCEEEEEEEECCSSCCHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-----TEE
T ss_pred eeEEecCceecCCceEEEEEEEEcCCCcEEEEEEEeeCcchhHHHHHHHHHHHHHhcCCCCeeeEEEEEeeC-----CEE
Confidence 467774 7899999999999999889999999999766555567899999999995 799999999997643 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc---eEEec
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV---AHVSD 855 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~---~kl~D 855 (1009)
++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++. +||+|
T Consensus 87 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~~~~kl~D 157 (316)
T 2ac3_A 87 YLVFEKMRGGSILSHIHKRR------HFNELEASVVVQDVASALDFLHNK---GIAHRDLKPENILCEHPNQVSPVKICD 157 (316)
T ss_dssp EEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEESCSSSSCSEEECC
T ss_pred EEEEEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHhC---CceeCCCCHHHEEEccCCCcCceEEEE
Confidence 99999999999999998764 389999999999999999999999 9999999999999998776 99999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCC-----CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-----GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTL 930 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~ 930 (1009)
||+++........... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+...
T Consensus 158 fg~~~~~~~~~~~~~~-~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~~~~ 236 (316)
T 2ac3_A 158 FDLGSGIKLNGDCSPI-STPELLTPCGSAEYMAPEVVEAFSEEASIYDKRCDLWSLGVILYILLSGYPPFVGRCGSDCGW 236 (316)
T ss_dssp TTCCC--------------------CCSGGGCCHHHHHHTSHHHHHHTTTHHHHHHHHHHHHHHHSSCSCCCCCCSCSCC
T ss_pred ccCccccccCCccccc-cccccccccCCcCccChHHhhcccccccCCCcccccHhHHHHHHHHHHCCCCCcccccccccc
Confidence 9999866432111100 1112223569999999999875 568899999999999999999999997643322110
Q ss_pred HHHHH-Hhccch-hhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 931 HEFAK-RALPEK-VMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 931 ~~~~~-~~~~~~-~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
..... ...... ...+...... .+... ......++.+++.+|++.||++|||++|+++
T Consensus 237 ~~~~~~~~~~~~~~~~i~~~~~~-~~~~~-------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 295 (316)
T 2ac3_A 237 DRGEACPACQNMLFESIQEGKYE-FPDKD-------WAHISCAAKDLISKLLVRDAKQRLSAAQVLQ 295 (316)
T ss_dssp ----CCHHHHHHHHHHHHHCCCC-CCHHH-------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred cccccchhHHHHHHHHHhccCcc-cCchh-------cccCCHHHHHHHHHHhhCChhhCCCHHHHhc
Confidence 00000 000000 0011111110 11000 0012346789999999999999999999986
No 157
>2i1m_A Macrophage colony-stimulating factor 1 receptor; kinase domain, kinase inhibitor complex, transferase; HET: 5CN; 1.80A {Homo sapiens} PDB: 3bea_A* 3lcd_A* 2i0y_A* 2i0v_A* 3dpk_A* 3krj_A* 3krl_A* 2ogv_A 3lco_A*
Probab=100.00 E-value=8.7e-39 Score=357.39 Aligned_cols=276 Identities=22% Similarity=0.326 Sum_probs=214.3
Q ss_pred HHHHhccCccCCcccccCCceEEEEEEecCC-----eEEEEEEeecccc-cchHHHHHHHHHHHhc-CCCCcceEEeeee
Q 047768 696 LSKATNEFSSSNTIGRGSFGFVYKGVLHENG-----MLVAVKVINLEQK-GGSKSFAAECEALRSI-RHRNLIKIVTICS 768 (1009)
Q Consensus 696 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~-----~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~ 768 (1009)
.....++|.+.+.||+|+||.||+|.+..++ +.||||+++.... ...+.+.+|+++++++ +||||+++++++.
T Consensus 41 ~~~~~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~ 120 (333)
T 2i1m_A 41 WEFPRNNLQFGKTLGAGAFGKVVEATAFGLGKEDAVLKVAVKMLKSTAHADEKEALMSELKIMSHLGQHENIVNLLGACT 120 (333)
T ss_dssp GBCCTTSEEEEEEEEECSSEEEEEEEETTCSSSCCCCEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEC
T ss_pred ccCCHHHceeeeEeccCCCcceEEEEecCCCcccchhHHHHHhcccccChHHHHHHHHHHHHHHhhcCCCCeeeEEEEEe
Confidence 3344578999999999999999999987555 3799999965432 2346788999999999 8999999999975
Q ss_pred ccccCCCceEEEEEeccCCCCHHHHHhccCCC--------CCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCC
Q 047768 769 SIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQ--------LGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKP 840 (1009)
Q Consensus 769 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~--------~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~ 840 (1009)
.. ...++||||+++|+|.+++...... .....+++..++.++.|++.||+|||++ +|+||||||
T Consensus 121 ~~-----~~~~lv~e~~~~g~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp 192 (333)
T 2i1m_A 121 HG-----GPVLVITEYCCYGDLLNFLRRKSRVLETDPAFAIANSTASTRDLLHFSSQVAQGMAFLASK---NCIHRDVAA 192 (333)
T ss_dssp SS-----SSCEEEEECCTTEEHHHHHHHHHHHHSCC-------CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSG
T ss_pred cC-----CceEEEEecCCCCcHHHHHHHhcccccccccccccccccCHHHHHHHHHHHHHHHHHHhcC---CcccCCccc
Confidence 43 5689999999999999999764310 0012479999999999999999999999 999999999
Q ss_pred CceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCC
Q 047768 841 SNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRP 919 (1009)
Q Consensus 841 ~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p 919 (1009)
+||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++|||||||++|||+| |..|
T Consensus 193 ~NIl~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~t~g~~p 266 (333)
T 2i1m_A 193 RNVLLTNGHVAKIGDFGLARDIMNDSN------YIVKGNARLPVKWMAPESIFDCVYTVQSDVWSYGILLWEIFSLGLNP 266 (333)
T ss_dssp GGCEEEGGGEEEBCCCGGGCCGGGCTT------SEECSSCEECGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTSCCS
T ss_pred ceEEECCCCeEEECccccccccccccc------eeecCCCCCCccccCHHHhccCCCChHHHHHHHHHHHHHHHcCCCCC
Confidence 999999999999999999986644321 011223557889999999999999999999999999999999 8999
Q ss_pred CcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHH
Q 047768 920 TESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCH 999 (1009)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~ 999 (1009)
|....... ............ .. +..++..+.+++.+||+.||.+|||+.|+++.|++
T Consensus 267 ~~~~~~~~-~~~~~~~~~~~~-----------~~-----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~ 323 (333)
T 2i1m_A 267 YPGILVNS-KFYKLVKDGYQM-----------AQ-----------PAFAPKNIYSIMQACWALEPTHRPTFQQICSFLQE 323 (333)
T ss_dssp STTCCSSH-HHHHHHHHTCCC-----------CC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHH
T ss_pred CcccchhH-HHHHHHhcCCCC-----------CC-----------CCCCCHHHHHHHHHHhccChhhCcCHHHHHHHHHH
Confidence 87543221 111111111000 00 01123457899999999999999999999999999
Q ss_pred HHHhhhcCC
Q 047768 1000 ARQNFLGQR 1008 (1009)
Q Consensus 1000 i~~~~~~~~ 1008 (1009)
+.++...+|
T Consensus 324 ~~~~~~~~r 332 (333)
T 2i1m_A 324 QAQEDRRER 332 (333)
T ss_dssp HHHHHHHHC
T ss_pred HHHhhhccC
Confidence 888765543
No 158
>1nxk_A MAP kinase-activated protein kinase 2; MK2, phosphorylation, staurosporine, transfe; HET: STU; 2.70A {Homo sapiens} SCOP: d.144.1.7 PDB: 1kwp_A* 1ny3_A* 2onl_C
Probab=100.00 E-value=1.1e-37 Score=356.00 Aligned_cols=255 Identities=21% Similarity=0.278 Sum_probs=194.3
Q ss_pred ccCccC-CcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHh-cCCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSS-NTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRS-IRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~-l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
++|.+. +.||+|+||+||+|.++.+++.||||+++. ...+.+|++++.+ .+||||+++++++... +.+....
T Consensus 61 ~~y~~~~~~LG~G~~g~V~~~~~~~~~~~vAiK~~~~-----~~~~~~E~~~~~~~~~hp~iv~l~~~~~~~-~~~~~~~ 134 (400)
T 1nxk_A 61 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCL 134 (400)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEE
T ss_pred ccceeccceeeeccCeEEEEEEECCCCCEEEEEEeCc-----chhHHHHHHHHHHhcCCCCcceEeEEEeec-ccCCcEE
Confidence 456665 689999999999999999999999999852 3567889998754 4899999999987642 2344678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC---CCceEEec
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH---DMVAHVSD 855 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~---~~~~kl~D 855 (1009)
++||||+++|+|.+++..... ..+++.++..++.|++.||.|||+. +||||||||+|||++. ++.+||+|
T Consensus 135 ~lv~E~~~gg~L~~~l~~~~~----~~l~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~~~kl~D 207 (400)
T 1nxk_A 135 LIVMECLDGGELFSRIQDRGD----QAFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTD 207 (400)
T ss_dssp EEEEECCCSEEHHHHHHCC-------CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESSSSTTCCEEECC
T ss_pred EEEEEeCCCCcHHHHHHHhCC----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCcCcceEEEecCCCCccEEEEe
Confidence 999999999999999987542 2489999999999999999999999 9999999999999998 78999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCc--cHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGL--TLHEF 933 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~--~~~~~ 933 (1009)
||+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||........ .....
T Consensus 208 FG~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~~~~~~~~~ 278 (400)
T 1nxk_A 208 FGFAKETTSH---------NSLTTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLAISPGMKTR 278 (400)
T ss_dssp CTTCEECC--------------------CTTCCGGGSCCCCSSSHHHHHHHHHHHHHHHHSSCSCCCCTTCSSCCSHHHH
T ss_pred cccccccCCC---------CccccCCCCCCccCHhhcCCCCCCCcccHHHHHHHHHHHHhCCCCCCCCccccccHHHHHH
Confidence 9999865432 122346789999999999999999999999999999999999999975432211 11111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.... ...+..+. ...+..++.+++.+||+.||++|||+.|+++.
T Consensus 279 i~~~----~~~~~~~~---------------~~~~s~~~~~li~~~L~~dP~~Rpt~~eil~h 322 (400)
T 1nxk_A 279 IRMG----QYEFPNPE---------------WSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 322 (400)
T ss_dssp HHHT----CCCCCTTT---------------TTTSCHHHHHHHHTTSCSSGGGSCCHHHHHHS
T ss_pred HHcC----cccCCCcc---------------cccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 1100 00000000 01223457899999999999999999999874
No 159
>2ozo_A Tyrosine-protein kinase ZAP-70; inactive ZAP-70, tandem SH2, autoinhibition, ITAM, hydrogen bonding network, TCR signaling, transferase; HET: ANP; 2.60A {Homo sapiens}
Probab=100.00 E-value=4e-38 Score=378.47 Aligned_cols=256 Identities=23% Similarity=0.375 Sum_probs=202.0
Q ss_pred cccccCCceEEEEEEe--cCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEEEEEec
Q 047768 708 TIGRGSFGFVYKGVLH--ENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKALVYEY 784 (1009)
Q Consensus 708 ~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~e~ 784 (1009)
.||+|+||.||+|.++ .++..||||+++.... ...+.+.+|+++|++++||||++++++|.. +..++||||
T Consensus 343 ~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~E~~il~~l~hpniv~l~~~~~~------~~~~lv~E~ 416 (613)
T 2ozo_A 343 ELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------EALMLVMEM 416 (613)
T ss_dssp EEEECSSSEEEEEEEECSSCEEEEEEEECCCCCSSTTHHHHHHHHHHHTTCCCTTBCCEEEEEES------SSEEEEEEC
T ss_pred EEecCCCcEEEEEEEecCCCcEEEEEEEcCCCCChHHHHHHHHHHHHHHhCCCCCEeeEEEEecc------CCeEEEEEe
Confidence 7999999999999886 3567899999975432 345789999999999999999999999753 357999999
Q ss_pred cCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccccccCC
Q 047768 785 MQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFLSA 864 (1009)
Q Consensus 785 ~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~~~ 864 (1009)
+++|+|.+++..... .+++.++..++.|++.||+|||++ +||||||||+|||++.++.+||+|||+++....
T Consensus 417 ~~~g~L~~~l~~~~~-----~l~~~~~~~i~~qi~~~L~~LH~~---~iiHrDlkp~NILl~~~~~vkL~DFGla~~~~~ 488 (613)
T 2ozo_A 417 AGGGPLHKFLVGKRE-----EIPVSNVAELLHQVSMGMKYLEEK---NFVHRNLAARNVLLVNRHYAKISDFGLSKALGA 488 (613)
T ss_dssp CTTCBHHHHHTTCTT-----TSCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCCSTTTTCC-
T ss_pred CCCCcHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEEcCcCCHHHEEEcCCCcEEEeeccCcccccC
Confidence 999999999976543 389999999999999999999999 999999999999999999999999999987643
Q ss_pred CCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhccchhh
Q 047768 865 SPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRALPEKVM 943 (1009)
Q Consensus 865 ~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~~~ 943 (1009)
... .........+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... .....+...
T Consensus 489 ~~~-----~~~~~~~~~~~~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~--~~~~~i~~~------ 555 (613)
T 2ozo_A 489 DDS-----YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIEQG------ 555 (613)
T ss_dssp ------------------CCTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCSH--HHHHHHHTT------
T ss_pred CCc-----eeeeccCCCCccceeCHhhhcCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCCCHH--HHHHHHHcC------
Confidence 211 0011122346789999999999999999999999999999998 99999754322 111111110
Q ss_pred hccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 944 EIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 944 ~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
.... .+..++.++.+++.+||+.||++||++.+|++.|+.+......
T Consensus 556 -----~~~~-----------~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~~~~ 602 (613)
T 2ozo_A 556 -----KRME-----------CPPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 602 (613)
T ss_dssp -----CCCC-----------CCTTCCHHHHHHHHHTTCSSTTTSCCHHHHHHHHHHHHHHHSC
T ss_pred -----CCCC-----------CCCcCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHhcc
Confidence 0000 1113446788999999999999999999999999998876543
No 160
>2i0e_A Protein kinase C-beta II; serine/threonine protein kinase, transferase; HET: TPO SEP PDS; 2.60A {Homo sapiens} PDB: 3iw4_A*
Probab=100.00 E-value=4.6e-38 Score=351.96 Aligned_cols=245 Identities=20% Similarity=0.252 Sum_probs=199.1
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 774 (1009)
..++|.+.+.||+|+||.||+|+++.+++.||||+++... ....+.+.+|.+++..+ +||+|+++++++..
T Consensus 18 ~~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~E~~~l~~~~~hp~iv~l~~~~~~----- 92 (353)
T 2i0e_A 18 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQT----- 92 (353)
T ss_dssp -CTTEEEEEEEEEETTEEEEEEEETTEEEEEEEEEEEHHHHHHTTCHHHHHHHHHHHTCTTCCTTBCCEEEEEEC-----
T ss_pred chHHcEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEHHHhhcchHHHHHHHHHHHHHhcCCCCEEeeEEEEEEc-----
Confidence 4578999999999999999999999889999999997542 23456788999999988 89999999998654
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
....++||||+++|+|.+++..... +++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 93 ~~~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~vkL~ 163 (353)
T 2i0e_A 93 MDRLYFVMEYVNGGDLMYHIQQVGR------FKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIA 163 (353)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTSCEEEC
T ss_pred CCEEEEEEeCCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CEEeccCCHHHEEEcCCCcEEEE
Confidence 3688999999999999999987543 89999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++...... ......+||+.|+|||++.+..++.++||||+||++|||++|+.||.... ..+..
T Consensus 164 DFG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~-----~~~~~ 230 (353)
T 2i0e_A 164 DFGMCKENIWDG--------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED-----EDELF 230 (353)
T ss_dssp CCTTCBCCCCTT--------CCBCCCCSCGGGCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHH
T ss_pred eCCcccccccCC--------cccccccCCccccChhhhcCCCcCCcccccchHHHHHHHHcCCCCCCCCC-----HHHHH
Confidence 999998543211 22334679999999999999999999999999999999999999997432 11221
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEM 990 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~ 990 (1009)
...... ... .+ .....++.+++.+|++.||++||++
T Consensus 231 ~~i~~~--------~~~-~p-----------~~~s~~~~~li~~lL~~dP~~R~~~ 266 (353)
T 2i0e_A 231 QSIMEH--------NVA-YP-----------KSMSKEAVAICKGLMTKHPGKRLGC 266 (353)
T ss_dssp HHHHHC--------CCC-CC-----------TTSCHHHHHHHHHHTCSCTTSCTTC
T ss_pred HHHHhC--------CCC-CC-----------CCCCHHHHHHHHHHhhcCHHHcCCC
Confidence 111111 000 00 0122457799999999999999964
No 161
>2a2a_A Death-associated protein kinase 2; autoinhibition, transferase; 1.47A {Homo sapiens} PDB: 2cke_A* 1wmk_A 1z9x_A 2a27_A 2x0g_A 2xuu_A* 2w4k_A* 2xzs_A
Probab=100.00 E-value=1.1e-37 Score=346.42 Aligned_cols=252 Identities=22% Similarity=0.284 Sum_probs=204.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc------chHHHHHHHHHHHhcCCCCcceEEeeeeccccC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG------GSKSFAAECEALRSIRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 773 (1009)
.++|.+.+.||+|+||.||+|+++.+|+.||||+++..... ..+.+.+|++++++++||||+++++++..
T Consensus 11 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~---- 86 (321)
T 2a2a_A 11 EDFYDIGEELGSGQFAIVKKCREKSTGLEYAAKFIKKRQSRASRRGVSREEIEREVSILRQVLHHNVITLHDVYEN---- 86 (321)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSSSCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC----
T ss_pred hccEEEeeEeeecCCEEEEEEEECCCCeEEEEEEEecccccccccchhHHHHHHHHHHHHhCCCCCcceEEEEEec----
Confidence 35799999999999999999999989999999999754322 24679999999999999999999999754
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC----
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM---- 849 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~---- 849 (1009)
....++||||+++++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++
T Consensus 87 -~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH~~---~ivH~dikp~NIl~~~~~~~~~ 156 (321)
T 2a2a_A 87 -RTDVVLILELVSGGELFDFLAQKE------SLSEEEATSFIKQILDGVNYLHTK---KIAHFDLKPENIMLLDKNIPIP 156 (321)
T ss_dssp -SSEEEEEECCCCSCBHHHHHHTCS------CEEHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESCTTSSSC
T ss_pred -CCEEEEEEEcCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCChHHEEEecCCCCcC
Confidence 367899999999999999998654 389999999999999999999999 999999999999999888
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCcc
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLT 929 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~ 929 (1009)
.+||+|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||.....
T Consensus 157 ~~kl~Dfg~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~---- 223 (321)
T 2a2a_A 157 HIKLIDFGLAHEIEDGV---------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGDTK---- 223 (321)
T ss_dssp CEEECCCTTCEECCTTC---------CCCCCCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSCCSSCCSSH----
T ss_pred CEEEccCccceecCccc---------cccccCCCCCccCcccccCCCCCCccccHHHHHHHHHHHHCCCCCCCCCH----
Confidence 79999999998765421 12235689999999999999999999999999999999999999964321
Q ss_pred HHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 930 LHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 930 ~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
...... +........+.. .......+.+++.+|++.||++|||+.|+++
T Consensus 224 -~~~~~~--------i~~~~~~~~~~~--------~~~~~~~~~~li~~~l~~dp~~Rps~~e~l~ 272 (321)
T 2a2a_A 224 -QETLAN--------ITSVSYDFDEEF--------FSHTSELAKDFIRKLLVKETRKRLTIQEALR 272 (321)
T ss_dssp -HHHHHH--------HHTTCCCCCHHH--------HTTCCHHHHHHHHTTSCSSTTTSCCHHHHHH
T ss_pred -HHHHHH--------HHhcccccChhh--------hcccCHHHHHHHHHHcCCChhhCcCHHHHhc
Confidence 111111 111011000000 0012345789999999999999999999986
No 162
>4fvq_A Tyrosine-protein kinase JAK2; janus protein kinase, pseudokinase, ATP binding, phosphoryla transferase; HET: ATP; 1.75A {Homo sapiens} PDB: 4fvp_A* 4fvr_A*
Probab=100.00 E-value=1.5e-38 Score=347.83 Aligned_cols=253 Identities=21% Similarity=0.343 Sum_probs=202.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCC-------eEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeecccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENG-------MLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDF 772 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-------~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 772 (1009)
.++|.+.+.||+|+||+||+|+++.++ ..||+|+++.......+.+.+|++++++++||||+++++++...
T Consensus 7 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~~~~va~K~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-- 84 (289)
T 4fvq_A 7 NEDLIFNESLGQGTFTKIFKGVRREVGDYGQLHETEVLLKVLDKAHRNYSESFFEAASMMSKLSHKHLVLNYGVCVCG-- 84 (289)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEEEEECGGGCEEEEEEEEEEECGGGGGGHHHHHHHHHHHHTSCCTTBCCEEEEECCT--
T ss_pred hhHeeeeeeeccCCCceEEEEEEecccccccccchhhhhhhcccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEEeC--
Confidence 457899999999999999999998666 57999999766655667899999999999999999999997643
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc--
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV-- 850 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~-- 850 (1009)
...++||||+++|+|.+++..... .+++..++.++.|++.||.|||++ +|+||||||+||+++.++.
T Consensus 85 ---~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~~ 153 (289)
T 4fvq_A 85 ---DENILVQEFVKFGSLDTYLKKNKN-----CINILWKLEVAKQLAAAMHFLEEN---TLIHGNVCAKNILLIREEDRK 153 (289)
T ss_dssp ---TCCEEEEECCTTCBHHHHHHHTGG-----GCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEEECCBGG
T ss_pred ---CCCEEEEECCCCCCHHHHHHhCCC-----CCCHHHHHHHHHHHHHHHHHHhhC---CeECCCcCcceEEEecCCccc
Confidence 567899999999999999987653 389999999999999999999999 9999999999999998887
Q ss_pred ------eEEeccccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 851 ------AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 851 ------~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
+||+|||+++..... ....||+.|+|||++.+ ..++.++|||||||++|||++|..|+...
T Consensus 154 ~~~~~~~kl~Dfg~~~~~~~~------------~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~~~~~~ 221 (289)
T 4fvq_A 154 TGNPPFIKLSDPGISITVLPK------------DILQERIPWVPPECIENPKNLNLATDKWSFGTTLWEICSGGDKPLSA 221 (289)
T ss_dssp GTBCCEEEECCCCSCTTTSCH------------HHHHHTTTTSCHHHHHCGGGCCHHHHHHHHHHHHHHHHTTTCCTTTT
T ss_pred ccccceeeeccCcccccccCc------------cccCCcCcccCHHHhCCCCCCCchhHHHHHHHHHHHHHcCCCCCccc
Confidence 999999998754321 12457899999999887 77899999999999999999965554322
Q ss_pred ccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 047768 924 FNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQ 1002 (1009)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~ 1002 (1009)
... ........ .....+. ....++.+++.+||+.||++|||+.|+++.|+++..
T Consensus 222 ~~~----~~~~~~~~--------~~~~~~~-------------~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~l~~ 275 (289)
T 4fvq_A 222 LDS----QRKLQFYE--------DRHQLPA-------------PKAAELANLINNCMDYEPDHRPSFRAIIRDLNSLFT 275 (289)
T ss_dssp SCH----HHHHHHHH--------TTCCCCC-------------CSSCTTHHHHHHHSCSSGGGSCCHHHHHHHHHTCC-
T ss_pred cch----HHHHHHhh--------ccCCCCC-------------CCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHhcC
Confidence 111 11110000 0000000 011246799999999999999999999999987654
No 163
>3kk8_A Calcium/calmodulin dependent protein kinase II; ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; HET: TPO; 1.72A {Caenorhabditis elegans} PDB: 3kk9_A* 3kl8_A 2vn9_A* 3bhh_A*
Probab=100.00 E-value=1.6e-37 Score=338.65 Aligned_cols=253 Identities=21% Similarity=0.338 Sum_probs=203.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||.||+|.++.+++.||+|++...... ..+.+.+|++++++++||||+++++++.. ...
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 79 (284)
T 3kk8_A 5 SDNYDVKEELGKGAFSVVRRCVHKTTGLEFAAKIINTKKLSARDFQKLEREARICRKLQHPNIVRLHDSIQE-----ESF 79 (284)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSE
T ss_pred hhhhhhhhhhcCcCCeEEEEEEEcCCCceEEEEEeecccCCHHHHHHHHHHHHHHHHcCCCCcCeEEEEEEc-----CCE
Confidence 46899999999999999999999989999999999754322 23578899999999999999999999754 367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc---eEEe
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV---AHVS 854 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~---~kl~ 854 (1009)
.++||||+++++|.+++..... +++.++..++.|++.|++|||+. +|+||||||+||+++.++. +||+
T Consensus 80 ~~~v~e~~~~~~l~~~~~~~~~------~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~~~~kl~ 150 (284)
T 3kk8_A 80 HYLVFDLVTGGELFEDIVAREF------YSEADASHCIQQILESIAYCHSN---GIVHRNLKPENLLLASKAKGAAVKLA 150 (284)
T ss_dssp EEEEECCCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSTTCCEEEC
T ss_pred EEEEEecCCCCCHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CcCcCCCCHHHEEEecCCCCCcEEEe
Confidence 8999999999999999887643 89999999999999999999999 9999999999999976655 9999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||++...... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ....
T Consensus 151 Dfg~~~~~~~~---------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~-----~~~~ 216 (284)
T 3kk8_A 151 DFGLAIEVNDS---------EAWHGFAGTPGYLSPEVLKKDPYSKPVDIWACGVILYILLVGYPPFWDEDQ-----HRLY 216 (284)
T ss_dssp CCTTCEECCSS---------CBCCCSCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH
T ss_pred eceeeEEcccC---------ccccCCCCCcCCcCchhhcCCCCCcccchHHHHHHHHHHHHCCCCCCCCch-----hHHH
Confidence 99999866542 122345789999999999999999999999999999999999999964321 1111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.... ........+.. .....++.+++.+|++.||++|||++|+++.
T Consensus 217 ~~~~-~~~~~~~~~~~---------------~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h 262 (284)
T 3kk8_A 217 AQIK-AGAYDYPSPEW---------------DTVTPEAKSLIDSMLTVNPKKRITADQALKV 262 (284)
T ss_dssp HHHH-HTCCCCCTTTT---------------TTSCHHHHHHHHHHSCSSTTTSCCHHHHTTS
T ss_pred HHHH-hccccCCchhh---------------cccCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 1110 00000000000 1123457899999999999999999999873
No 164
>1t4h_A Serine/threonine-protein kinase WNK1; protein serine/threonine kinase, transferase; 1.80A {Rattus norvegicus} PDB: 3fpq_A
Probab=100.00 E-value=1.3e-37 Score=340.51 Aligned_cols=252 Identities=25% Similarity=0.365 Sum_probs=200.6
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
+.|.+.+.||+|+||+||+|.+..++..||+|++..... ...+.+.+|++++++++||||+++++++... ..+....
T Consensus 26 ~~~~~~~~lg~G~~g~Vy~~~~~~~~~~va~k~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-~~~~~~~ 104 (290)
T 1t4h_A 26 RFLKFDIEIGRGSFKTVYKGLDTETTVEVAWCELQDRKLTKSERQRFKEEAEMLKGLQHPNIVRFYDSWEST-VKGKKCI 104 (290)
T ss_dssp CEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEGGGSCHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEEE-SSSCEEE
T ss_pred eeEEeeeeccCCCCeEEEEeEecCCceEEEEEEecchhhCHHHHHHHHHHHHHHHhCCCCCeeeeeeeeccc-cCCCceE
Confidence 457778899999999999999999999999999975432 2346788999999999999999999987653 3345678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceecCCCCCceeeC-CCCceEEec
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPP--IVHGDLKPSNVLLD-HDMVAHVSD 855 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~--ivHrdlk~~Nill~-~~~~~kl~D 855 (1009)
++||||+++|+|.+++..... +++..++.++.|++.||.|||+. + |+||||||+||+++ .++.+||+|
T Consensus 105 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~kl~D 175 (290)
T 1t4h_A 105 VLVTELMTSGTLKTYLKRFKV------MKIKVLRSWCRQILKGLQFLHTR---TPPIIHRDLKCDNIFITGPTGSVKIGD 175 (290)
T ss_dssp EEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHTS---SSCCCCSCCCGGGEEESSTTSCEEECC
T ss_pred EEEEEecCCCCHHHHHHHccC------CCHHHHHHHHHHHHHHHHHHHcC---CCCEEECCCCHHHEEEECCCCCEEEee
Confidence 999999999999999987543 89999999999999999999998 7 99999999999997 789999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+++..... ......||+.|+|||++. +.++.++||||+|+++|||++|+.||...... .....
T Consensus 176 fg~~~~~~~~----------~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~----~~~~~ 240 (290)
T 1t4h_A 176 LGLATLKRAS----------FAKAVIGTPEFMAPEMYE-EKYDESVDVYAFGMCMLEMATSEYPYSECQNA----AQIYR 240 (290)
T ss_dssp TTGGGGCCTT----------SBEESCSSCCCCCGGGGG-TCCCTHHHHHHHHHHHHHHHHSSCTTTTCSSH----HHHHH
T ss_pred CCCccccccc----------ccccccCCcCcCCHHHHh-ccCCCcchHHHHHHHHHHHHhCCCCCCCcCcH----HHHHH
Confidence 9999754332 222356899999999876 45899999999999999999999999743221 11111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.... ...... .......++.+++.+|++.||++|||+.|+++
T Consensus 241 ~~~~---------~~~~~~---------~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 282 (290)
T 1t4h_A 241 RVTS---------GVKPAS---------FDKVAIPEVKEIIEGCIRQNKDERYSIKDLLN 282 (290)
T ss_dssp HHTT---------TCCCGG---------GGGCCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHhc---------cCCccc---------cCCCCCHHHHHHHHHHccCChhhCCCHHHHhh
Confidence 1110 000000 00111245789999999999999999999975
No 165
>2y94_A 5'-AMP-activated protein kinase catalytic subunit; transferase, nucleotide-binding, staurosporine-binding, serine/threonine-protein kinase; HET: TPO STU AMP; 3.24A {Rattus norvegicus}
Probab=100.00 E-value=6.3e-38 Score=363.38 Aligned_cols=248 Identities=27% Similarity=0.381 Sum_probs=203.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|++..+|+.||||+++... ......+.+|+++++.++||||+++++++... .
T Consensus 15 ~~~Y~l~~~LG~G~fg~V~~a~~~~~g~~vAvK~i~~~~~~~~~~~~~~~~Ei~~l~~l~HpnIv~l~~~~~~~-----~ 89 (476)
T 2y94_A 15 IGHYILGDTLGVGTFGKVKVGKHELTGHKVAVKILNRQKIRSLDVVGKIRREIQNLKLFRHPHIIKLYQVISTP-----S 89 (476)
T ss_dssp ETTEEEEEEEECCSSSCEEEEEETTTCCEEEEEEEEHHHHHHTTTHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----S
T ss_pred ecCEEEEEEEeeCCCeEEEEEEECCCCCEEEEEEEEhhhccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEEEC-----C
Confidence 357899999999999999999999899999999996442 22346789999999999999999999997543 6
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 90 ~~~lv~E~~~gg~L~~~l~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---givHrDLkp~NIll~~~~~vkL~DF 160 (476)
T 2y94_A 90 DIFMVMEYVSGGELFDYICKNG------RLDEKESRRLFQQILSGVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADF 160 (476)
T ss_dssp EEEEEEECCSSEEHHHHTTSSS------SCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEECTTCCEEECCC
T ss_pred EEEEEEeCCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCcccccHHHEEEecCCCeEEEec
Confidence 7899999999999999998654 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++...... ......||+.|+|||++.+..+ +.++||||+||++|||++|+.||..... .....
T Consensus 161 G~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlGvil~elltG~~Pf~~~~~-----~~~~~ 226 (476)
T 2y94_A 161 GLSNMMSDGE---------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSSGVILYALLCGTLPFDDDHV-----PTLFK 226 (476)
T ss_dssp SSCEECCTTC---------CBCCCCSCSTTCCHHHHTTCCBCSHHHHHHHHHHHHHHHHHSSCSSCCSSS-----HHHHH
T ss_pred cchhhccccc---------cccccCCCcCeEChhhccCCCCCCCcceehhhHHHHHHHhhCCCCCCCCCH-----HHHHH
Confidence 9998765421 1234579999999999988776 7899999999999999999999974321 11111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
. +.+.... .+ .....++.+++.+|++.||++|||+.|+++
T Consensus 227 ~--------i~~~~~~-~p-----------~~~s~~~~~Li~~~L~~dP~~Rpt~~eil~ 266 (476)
T 2y94_A 227 K--------ICDGIFY-TP-----------QYLNPSVISLLKHMLQVDPMKRATIKDIRE 266 (476)
T ss_dssp H--------HHTTCCC-CC-----------TTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred H--------HhcCCcC-CC-----------ccCCHHHHHHHHHHcCCCchhCcCHHHHHh
Confidence 1 1111110 00 011235779999999999999999999986
No 166
>3rp9_A Mitogen-activated protein kinase; structural genomics, structural genomics consortium, SGC, TR; 2.40A {Toxoplasma gondii}
Probab=100.00 E-value=1.8e-37 Score=362.28 Aligned_cols=207 Identities=25% Similarity=0.349 Sum_probs=160.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|+++.+++.||||++..... ...+.+.+|++++++++||||+++++++..........
T Consensus 52 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 131 (458)
T 3rp9_A 52 PDRYEIRHLIGTGSYGHVCEAYDKLEKRVVAIKKILRVFEDLIDCKRILREIAILNRLNHDHVVKVLDIVIPKDVEKFDE 131 (458)
T ss_dssp CTTEEECCC-------CEEEEEECC--CEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred CCCeEEeeEeeecCCeEEEEEEECCCCcEEEEEEechhhcCHHHHHHHHHHHHHHHhCCCCCCCceEEEEecCCcccCce
Confidence 3689999999999999999999999999999999854322 23467889999999999999999999986654555577
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+ +|+|.+++.... .+++..++.++.|++.||+|||+. +||||||||+|||++.++.+||+|||
T Consensus 132 ~~lv~e~~-~~~L~~~~~~~~------~l~~~~~~~~~~qi~~aL~~LH~~---~iiHrDlKp~NILl~~~~~~kl~DFG 201 (458)
T 3rp9_A 132 LYVVLEIA-DSDFKKLFRTPV------YLTELHIKTLLYNLLVGVKYVHSA---GILHRDLKPANCLVNQDCSVKVCDFG 201 (458)
T ss_dssp EEEEECCC-SEEHHHHHHSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEecc-ccchhhhcccCC------CCCHHHHHHHHHHHHHHHHHHHhC---CcCCCCCChhhEEECCCCCEeecccc
Confidence 89999998 579999997654 389999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCcc-------------------ccCCccccccccccccCcccc-CCCCCCCcccchHHHHHHHHHHhC
Q 047768 858 LAKFLSASPLGNVV-------------------ETPSSSIGVKGTIGYVAPEYG-LGGEASMRGGVYSYGILLLEIFTR 916 (1009)
Q Consensus 858 la~~~~~~~~~~~~-------------------~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwS~Gvvl~elltg 916 (1009)
+|+........... .......+.+||+.|+|||++ .+..++.++|||||||++|||++|
T Consensus 202 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~aPE~~~~~~~~~~~~DiwSlG~il~elltg 280 (458)
T 3rp9_A 202 LARTVDYPENGNSQLPISPREDDMNLVTFPHTKNLKRQLTGHVVTRWYRAPELILLQENYTEAIDVWSIGCIFAELLNM 280 (458)
T ss_dssp TCBCTTSCTTCCCCCC---------------------------CCCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHTT
T ss_pred cchhccCccccccccccCccccccccccccccccccccccCCcccccccChHHhhCCCCCCcHhHHHHHHHHHHHHHHh
Confidence 99877533211000 001123456789999999976 566799999999999999999994
No 167
>3kn6_A Ribosomal protein S6 kinase alpha-5; AMP-PNP, MSK1, MSK, ATP-binding, metal-binding, NUCL binding, serine/threonine-protein kinase, transferase; 2.00A {Homo sapiens} PDB: 3kn5_A
Probab=100.00 E-value=3.3e-38 Score=350.41 Aligned_cols=249 Identities=22% Similarity=0.276 Sum_probs=179.7
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-CCCcceEEeeeeccccCCCceEEEEEec
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRNLIKIVTICSSIDFKGVDFKALVYEY 784 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~~~~~~lv~e~ 784 (1009)
.+.||+|+||+||+|.++.+++.||||+++.. ....+.+|+++++.+. ||||+++++++.. ....++||||
T Consensus 16 ~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~l~~l~~h~niv~~~~~~~~-----~~~~~lv~e~ 87 (325)
T 3kn6_A 16 DKPLGEGSFSICRKCVHKKSNQAFAVKIISKR---MEANTQKEITALKLCEGHPNIVKLHEVFHD-----QLHTFLVMEL 87 (325)
T ss_dssp SCCSEEETTEEEEEEEETTTCCEEEEEEEEGG---GHHHHHHHHHHHHHTTTCTTBCCEEEEEEC-----SSEEEEEECC
T ss_pred CCccccCCCeEEEEEEECCCCCEEEEEEEChh---hhhhHHHHHHHHHHhcCCCCeeEEEEEEEc-----CCEEEEEEEc
Confidence 47899999999999999999999999998643 3467889999999997 9999999999754 3678999999
Q ss_pred cCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC---ceEEeccccccc
Q 047768 785 MQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM---VAHVSDFGLAKF 861 (1009)
Q Consensus 785 ~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~---~~kl~DfGla~~ 861 (1009)
+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++.
T Consensus 88 ~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~kl~Dfg~a~~ 158 (325)
T 3kn6_A 88 LNGGELFERIKKKK------HFSETEASYIMRKLVSAVSHMHDV---GVVHRDLKPENLLFTDENDNLEIKIIDFGFARL 158 (325)
T ss_dssp CCSCBHHHHHHHCS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEEEC----CEEEECCCTTCEE
T ss_pred cCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecCCCHHHEEEecCCCcccEEEecccccee
Confidence 99999999998764 389999999999999999999999 999999999999997765 899999999986
Q ss_pred cCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccC--CccHHHHHHHhcc
Q 047768 862 LSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNE--GLTLHEFAKRALP 939 (1009)
Q Consensus 862 ~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~--~~~~~~~~~~~~~ 939 (1009)
..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .....+.....
T Consensus 159 ~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~~~~~~~~~~~~~~i-- 228 (325)
T 3kn6_A 159 KPPDN--------QPLKTPCFTLHYAAPELLNQNGYDESCDLWSLGVILYTMLSGQVPFQSHDRSLTCTSAVEIMKKI-- 228 (325)
T ss_dssp CCC------------------------------CCCCHHHHHHHHHHHHHHHHHSSCTTC-------CCCHHHHHHHH--
T ss_pred cCCCC--------CcccccCCCcCccCHHHhcCCCCCCccchHHHHHHHHHHHhCCCCCCCCccccccccHHHHHHHH--
Confidence 54321 1223456899999999999999999999999999999999999999754321 11112221111
Q ss_pred chhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 940 EKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 940 ~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.......... .......++.+++.+|++.||++|||++|+++
T Consensus 229 ------~~~~~~~~~~--------~~~~~s~~~~~li~~~L~~dP~~Rpt~~ell~ 270 (325)
T 3kn6_A 229 ------KKGDFSFEGE--------AWKNVSQEAKDLIQGLLTVDPNKRLKMSGLRY 270 (325)
T ss_dssp ------TTTCCCCCSH--------HHHTSCHHHHHHHHHHHCCCTTTCCCTTTSTT
T ss_pred ------HcCCCCCCcc--------cccCCCHHHHHHHHHHCCCChhHCCCHHHHhc
Confidence 1111110000 00122356789999999999999999999863
No 168
>2w1i_A JAK2; chromosomal rearrangement, nucleotide-binding, tyrosine-protein kinase, proto-oncogene, phosphoprotein, disease mutation, SH2 domain; HET: PTR L0I; 2.60A {Homo sapiens}
Probab=100.00 E-value=4.5e-38 Score=350.26 Aligned_cols=274 Identities=24% Similarity=0.379 Sum_probs=213.3
Q ss_pred hccCccCCcccccCCceEEEEEE----ecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVL----HENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~----~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||.||+|++ ..+++.||||++........+.+.+|++++++++||||+++++++... +.
T Consensus 40 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~ 116 (326)
T 2w1i_A 40 ERHLKFLQQLGKGNFGSVEMCRYDPLQDNTGEVVAVKKLQHSTEEHLRDFEREIEILKSLQHDNIVKYKGVCYSA---GR 116 (326)
T ss_dssp GGGEEEEEEEECCSSEEEEEEEECTTSSSCCEEEEEEEESSCCSHHHHHHHHHHHHHHTCCCTTBCCEEEEECC------
T ss_pred HHHceeeeeeccCCCeEEEEEEeccccCCCceEEEEEEeccCCHHHHHHHHHHHHHHHhCCCCCeeeEEEEEEec---CC
Confidence 45788999999999999999995 457899999999765554557899999999999999999999987542 23
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++++|.+++..... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 117 ~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dikp~NIli~~~~~~kL~D 188 (326)
T 2w1i_A 117 RNLKLIMEYLPYGSLRDYLQKHKE-----RIDHIKLLQYTSQICKGMEYLGTK---RYIHRDLATRNILVENENRVKIGD 188 (326)
T ss_dssp -CCEEEECCCTTCBHHHHHHHSTT-----SSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEECC
T ss_pred CceEEEEECCCCCCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CEeccCCCcceEEEcCCCcEEEec
Confidence 467899999999999999987653 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+++........ ........++..|+|||++.+..++.++||||||+++|||+||+.|+..... .+..
T Consensus 189 fg~~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~tg~~~~~~~~~------~~~~ 257 (326)
T 2w1i_A 189 FGLTKVLPQDKEY-----YKVKEPGESPIFWYAPESLTESKFSVASDVWSFGVVLYELFTYIEKSKSPPA------EFMR 257 (326)
T ss_dssp CTTCEECCSSCSE-----EECSSCCSCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHHTTCGGGSHHH------HHHH
T ss_pred Ccchhhccccccc-----cccccCCCCceeEECchhhcCCCCCchhhHHHHHHHHHHHHhcCCCCCCCHH------HHHH
Confidence 9999876543210 0112234577889999999998999999999999999999999999763211 1110
Q ss_pred Hhcc--------chhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 936 RALP--------EKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 936 ~~~~--------~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
.... ..+.+.+..... ......++.++.+++.+||+.||++|||+.|+++.|+++++.+.
T Consensus 258 ~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~l~~li~~cl~~dP~~Rps~~el~~~L~~l~~~l~ 325 (326)
T 2w1i_A 258 MIGNDKQGQMIVFHLIELLKNNGR----------LPRPDGCPDEIYMIMTECWNNNVNQRPSFRDLALRVDQIRDQMA 325 (326)
T ss_dssp HHCTTCCTHHHHHHHHHHHHTTCC----------CCCCTTCCHHHHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHHH
T ss_pred hhccccchhhhHHHHHHHhhcCCC----------CCCCCcccHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHhc
Confidence 0000 001111111000 01112344568899999999999999999999999999998764
No 169
>1qpc_A LCK kinase; alpha beta fold, transferase; HET: PTR ANP; 1.60A {Homo sapiens} SCOP: d.144.1.7 PDB: 1qpe_A* 1qpj_A* 2pl0_A* 3kxz_A* 3ac1_A* 2zm4_A* 2zyb_A* 2zm1_A* 3ac2_A* 3ac3_A* 3ac4_A* 3ac5_A* 3ac8_A* 3acj_A* 3ack_A* 3ad4_A* 3ad5_A* 3ad6_A* 3kmm_A* 1qpd_A* ...
Probab=100.00 E-value=4.2e-38 Score=342.40 Aligned_cols=263 Identities=25% Similarity=0.426 Sum_probs=209.6
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
..++|.+.+.||+|+||.||+|.+. ++..||||+++... ...+.+.+|++++++++||||+++++++.. ...
T Consensus 11 ~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------~~~ 82 (279)
T 1qpc_A 11 PRETLKLVERLGAGQFGEVWMGYYN-GHTKVAVKSLKQGS-MSPDAFLAEANLMKQLQHQRLVRLYAVVTQ------EPI 82 (279)
T ss_dssp CGGGEEEEEEEEEETTEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSC
T ss_pred CHHhhhheeeecCCCCeEEEEEEEc-CCcEEEEEEecCCc-ccHHHHHHHHHHHHhCCCcCcceEEEEEcC------CCc
Confidence 3468899999999999999999975 67889999986443 346789999999999999999999998653 347
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++++|.+++..... ..+++.++..++.|++.||+|||++ +|+||||||+||++++++.+||+|||+
T Consensus 83 ~~v~e~~~~~~L~~~l~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~Nil~~~~~~~kl~Dfg~ 155 (279)
T 1qpc_A 83 YIITEYMENGSLVDFLKTPSG----IKLTINKLLDMAAQIAEGMAFIEER---NYIHRDLRAANILVSDTLSCKIADFGL 155 (279)
T ss_dssp EEEEECCTTCBHHHHTTSHHH----HTCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEecCCCCCHHHHHhcCCC----CCCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHhhEEEcCCCCEEECCCcc
Confidence 899999999999999976431 1389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++....... .......++..|+|||++.+..++.++||||||+++|||++ |+.||..... .+.....
T Consensus 156 ~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~~~~~~-----~~~~~~~ 223 (279)
T 1qpc_A 156 ARLIEDNEY-------TAREGAKFPIKWTAPEAINYGTFTIKSDVWSFGILLTEIVTHGRIPYPGMTN-----PEVIQNL 223 (279)
T ss_dssp CEECSSSCE-------ECCTTCCCCTTTSCHHHHHHCEECHHHHHHHHHHHHHHHHTTTCCSSTTCCH-----HHHHHHH
T ss_pred cccccCccc-------ccccCCCCccCccChhhhccCCCCchhhhHHHHHHHHHHHhCCCCCCcccCH-----HHHHHHH
Confidence 987654321 11223457889999999998899999999999999999999 8999874321 1111111
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhcC
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLGQ 1007 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~~ 1007 (1009)
. ...... ....+..++.+++.+|++.||++|||+.++++.|+++......+
T Consensus 224 ~--------~~~~~~-----------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~~ 274 (279)
T 1qpc_A 224 E--------RGYRMV-----------RPDNCPEELYQLMRLCWKERPEDRPTFDYLRSVLEDFFTATEGQ 274 (279)
T ss_dssp H--------TTCCCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC---
T ss_pred h--------cccCCC-----------CcccccHHHHHHHHHHhccChhhCCCHHHHHHHHHHHHHhccCC
Confidence 0 000000 01123346889999999999999999999999999988776543
No 170
>3cok_A Serine/threonine-protein kinase PLK4; POLO-like kinase 4, SAK, STK18, PSI, structural genomics, protein structure initiative; HET: ANP; 2.25A {Homo sapiens}
Probab=100.00 E-value=9.1e-38 Score=339.54 Aligned_cols=250 Identities=23% Similarity=0.388 Sum_probs=183.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|++..+++.||||++.... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 10 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 84 (278)
T 3cok_A 10 IEDFKVGNLLGKGSFAGVYRAESIHTGLEVAIKMIDKKAMYKAGMVQRVQNEVKIHCQLKHPSILELYNYFED-----SN 84 (278)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHTTBCCTTBCCEEEEEEC-----SS
T ss_pred cccceeeeeecCCCceEEEEEEEccCCceEEEEEeehhhhhhhhHHHHHHHHHHHHHhCCCCCeEeEEEEEcc-----CC
Confidence 467999999999999999999998899999999996442 2234678999999999999999999999754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.+++..... .+++.+++.++.|++.|++|||++ +|+||||||+||+++.++.+||+||
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nili~~~~~~kl~df 156 (278)
T 3cok_A 85 YVYLVLEMCHNGEMNRYLKNRVK-----PFSENEARHFMHQIITGMLYLHSH---GILHRDLTLSNLLLTRNMNIKIADF 156 (278)
T ss_dssp EEEEEEECCTTEEHHHHHHTCSS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECSSCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEecCCCCcHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHEEEcCCCCEEEEee
Confidence 78999999999999999987543 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||....... .
T Consensus 157 g~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-----~--- 220 (278)
T 3cok_A 157 GLATQLKMPH--------EKHYTLCGTPNYISPEIATRSAHGLESDVWSLGCMFYTLLIGRPPFDTDTVKN-----T--- 220 (278)
T ss_dssp TTCEECC------------------------------------CTHHHHHHHHHHHHHHSSCSSCCCSCC----------
T ss_pred cceeeccCCC--------CcceeccCCCCcCCcchhcCCCCCchhhHHHHHHHHHHHHhCCCCCCChhHHH-----H---
Confidence 9998764321 11223568999999999999999999999999999999999999997432211 0
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.......... .+ .....++.+++.+|++.||++|||++|+++
T Consensus 221 -----~~~~~~~~~~-~~-----------~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 262 (278)
T 3cok_A 221 -----LNKVVLADYE-MP-----------SFLSIEAKDLIHQLLRRNPADRLSLSSVLD 262 (278)
T ss_dssp --------CCSSCCC-CC-----------TTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred -----HHHHhhcccC-Cc-----------cccCHHHHHHHHHHcccCHhhCCCHHHHhc
Confidence 0011100000 00 112345789999999999999999999976
No 171
>1xbb_A Tyrosine-protein kinase SYK; gleevec, STI-571, imatinib, spleen typrosine kinase, active conformation, structural genomics, structural genomix; HET: STI; 1.57A {Homo sapiens} SCOP: d.144.1.7 PDB: 1xba_A* 1xbc_A* 3fqe_A* 3fqh_A* 3fqs_A* 3emg_A* 3srv_A* 4dfl_A* 4dfn_A* 3vf8_A* 3vf9_A*
Probab=100.00 E-value=1.7e-38 Score=347.73 Aligned_cols=264 Identities=23% Similarity=0.346 Sum_probs=206.5
Q ss_pred HhccCccCC-cccccCCceEEEEEE--ecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccC
Q 047768 699 ATNEFSSSN-TIGRGSFGFVYKGVL--HENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 699 ~~~~~~~~~-~lg~G~~g~V~~~~~--~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 773 (1009)
..++|.+.+ .||+|+||+||+|.+ ..+++.||||+++..... ..+.+.+|++++++++||||+++++++..
T Consensus 14 ~~~~y~~~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 89 (291)
T 1xbb_A 14 DRKLLTLEDKELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA---- 89 (291)
T ss_dssp CGGGEEEEEEEEEECSSEEEEEEEEECSSSEEEEEEEEEC-----CHHHHHHHHHHHHHHTCCCTTBCCEEEEEES----
T ss_pred cchhhhhccCccccccCeeeEeeeecCCCceeeEEEEeecccccCHHHHHHHHHHHHHHHhCCCCCEEEEEEEECC----
Confidence 346788877 999999999999965 456789999999654322 24678999999999999999999999732
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEE
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHV 853 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl 853 (1009)
...++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||
T Consensus 90 --~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl 158 (291)
T 1xbb_A 90 --ESWMLVMEMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKI 158 (291)
T ss_dssp --SSEEEEEECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEEETTEEEE
T ss_pred --CCcEEEEEeCCCCCHHHHHHhCc------CCCHHHHHHHHHHHHHHHHHHHhC---CeEcCCCCcceEEEeCCCcEEE
Confidence 56789999999999999998754 389999999999999999999999 9999999999999999999999
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHH
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~ 932 (1009)
+|||+++....... .........+|+.|+|||++.+..++.++||||||+++|||++ |+.||...... ....
T Consensus 159 ~Dfg~~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~~--~~~~ 231 (291)
T 1xbb_A 159 SDFGLSKALRADEN-----YYKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS--EVTA 231 (291)
T ss_dssp CCCTTCEECCTTCS-----EEEC----CCCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTTCCSSTTCCHH--HHHH
T ss_pred ccCCcceeeccCCC-----cccccccCCCCceeeChHHhccCCCChhhhHHHHHHHHHHHHhcCCCCCCCCCHH--HHHH
Confidence 99999987654321 0011222446789999999998899999999999999999999 99999753221 1111
Q ss_pred HHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
..... .... ....+...+.+++.+||+.||++||++.|+++.|+++.....+
T Consensus 232 ~~~~~-----------~~~~-----------~~~~~~~~l~~li~~~l~~dp~~Rps~~~l~~~L~~~~~~~~~ 283 (291)
T 1xbb_A 232 MLEKG-----------ERMG-----------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVVN 283 (291)
T ss_dssp HHHTT-----------CCCC-----------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHHH
T ss_pred HHHcC-----------CCCC-----------CCCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHHHhh
Confidence 11100 0000 0112345688999999999999999999999999998876543
No 172
>1u59_A Tyrosine-protein kinase ZAP-70; transferase; HET: STU; 2.30A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=6e-38 Score=342.58 Aligned_cols=263 Identities=23% Similarity=0.375 Sum_probs=208.7
Q ss_pred ccCccCC-cccccCCceEEEEEEe--cCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 701 NEFSSSN-TIGRGSFGFVYKGVLH--ENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 701 ~~~~~~~-~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
++|.+.+ .||+|+||.||+|.+. .++..||||+++.... ...+.+.+|++++++++||||+++++++.. .
T Consensus 9 ~~~~i~~~~lg~G~~g~Vy~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~------~ 82 (287)
T 1u59_A 9 DNLLIADIELGCGNFGSVRQGVYRMRKKQIDVAIKVLKQGTEKADTEEMMREAQIMHQLDNPYIVRLIGVCQA------E 82 (287)
T ss_dssp GGEEEEEEEEECCTTEEEEEEEEC---CCEEEEEEEECSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEES------S
T ss_pred HHhhhhhccccccCceeEEEeEeccCCCcceEEEEecCCccchhHHHHHHHHHHHHHhCCCCCEeEEEEEecC------C
Confidence 4566665 8999999999999864 4678899999975432 234678999999999999999999999732 4
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.+++..... .+++.+++.++.|++.||.|||+. +|+||||||+||+++.++.+||+||
T Consensus 83 ~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~Df 154 (287)
T 1u59_A 83 ALMLVMEMAGGGPLHKFLVGKRE-----EIPVSNVAELLHQVSMGMKYLEEK---NFVHRDLAARNVLLVNRHYAKISDF 154 (287)
T ss_dssp SEEEEEECCTTEEHHHHHTTCTT-----TSCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEEETTEEEECCC
T ss_pred CcEEEEEeCCCCCHHHHHHhCCc-----cCCHHHHHHHHHHHHHHHHHHHHC---CEeeCCCchheEEEcCCCCEEECcc
Confidence 57999999999999999976543 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++....... .........||+.|+|||++.+..++.++||||||+++|||++ |+.||...... .......
T Consensus 155 g~~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~~--~~~~~i~ 227 (287)
T 1u59_A 155 GLSKALGADDS-----YYTARSAGKWPLKWYAPECINFRKFSSRSDVWSYGVTMWEALSYGQKPYKKMKGP--EVMAFIE 227 (287)
T ss_dssp TTCEECTTCSC-----EECCCCSSCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCCTH--HHHHHHH
T ss_pred cceeeeccCcc-----eeeccccccccccccCHHHhccCCCCchhhHHHHHHHHHHHHcCCCCCcccCCHH--HHHHHHh
Confidence 99987654321 0111223457899999999988899999999999999999999 99999754321 1111111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
.. ..... +..++.++.+++.+||+.||++||++.|+++.|+++..+...
T Consensus 228 ~~-----------~~~~~-----------~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 276 (287)
T 1u59_A 228 QG-----------KRMEC-----------PPECPPELYALMSDCWIYKWEDRPDFLTVEQRMRACYYSLAS 276 (287)
T ss_dssp TT-----------CCCCC-----------CTTCCHHHHHHHHHTTCSSGGGSCCHHHHHHHHHHHHHHHHT
T ss_pred cC-----------CcCCC-----------CCCcCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHHHHhcCC
Confidence 10 00000 112345688999999999999999999999999999887654
No 173
>3pls_A Macrophage-stimulating protein receptor; protein kinase, CIS autophosphorylation conformation, recept tyrosine kinase, AMP-PNP, unphosphorylated; HET: ANP; 2.24A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1e-37 Score=342.82 Aligned_cols=268 Identities=24% Similarity=0.374 Sum_probs=208.7
Q ss_pred cCccCCcccccCCceEEEEEEecCCe---EEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 702 EFSSSNTIGRGSFGFVYKGVLHENGM---LVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 702 ~~~~~~~lg~G~~g~V~~~~~~~~~~---~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.|...+.||+|+||+||+|.+..++. .||+|+++.... ...+.+.+|++++++++||||+++++++... ...
T Consensus 22 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~----~~~ 97 (298)
T 3pls_A 22 VTHSDRVIGKGHFGVVYHGEYIDQAQNRIQCAIKSLSRITEMQQVEAFLREGLLMRGLNHPNVLALIGIMLPP----EGL 97 (298)
T ss_dssp EEEEEEEEEEETTEEEEEEEEECSSSCEEEEEEEEETTCCSHHHHHHHHHHHHHHHTCCCTTBCCCCEEECCS----SSC
T ss_pred EEccCceeccCCCceEEEEEEecCCCceeeeeeeeccccccHHHHHHHHHHHHHHHhCCCCCeeeEEEEEecC----CCC
Confidence 45667899999999999999865443 799999864332 2346788999999999999999999997542 244
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++|+||+.+|+|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 98 ~~~v~e~~~~~~L~~~~~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dikp~Nili~~~~~~kl~Dfg 169 (298)
T 3pls_A 98 PHVLLPYMCHGDLLQFIRSPQR-----NPTVKDLISFGLQVARGMEYLAEQ---KFVHRDLAARNCMLDESFTVKVADFG 169 (298)
T ss_dssp CEEEECCCTTCBHHHHHHCTTC-----CCBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTCCEEECCTT
T ss_pred cEEEEecccCCCHHHHHhcccc-----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCcceEEEcCCCcEEeCcCC
Confidence 5899999999999999987543 389999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
+++....... ..........+|+.|+|||.+.+..++.++||||||+++|||++|..|+...... ..........
T Consensus 170 ~~~~~~~~~~----~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~~~~~~~~~-~~~~~~~~~~ 244 (298)
T 3pls_A 170 LARDILDREY----YSVQQHRHARLPVKWTALESLQTYRFTTKSDVWSFGVLLWELLTRGAPPYRHIDP-FDLTHFLAQG 244 (298)
T ss_dssp SSCTTTTGGG----GCSCCSSCTTCGGGGSCHHHHTTCCCCHHHHHHHHHHHHHHHHHTSCCTTTTSCG-GGHHHHHHTT
T ss_pred CcccccCCcc----cccccCcCCCCCccccChhhhccCCCChhhchhhHHHHHHHHhhCCCCCCccCCH-HHHHHHhhcC
Confidence 9986643211 1112223456889999999999999999999999999999999966665432221 1111111111
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhcCC
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLGQR 1008 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~~~ 1008 (1009)
.. ... ...+...+.+++.+|++.||.+|||+.|+++.|+++.+.+....
T Consensus 245 ~~-----------~~~-----------~~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~l~~~~~~l~~~~ 293 (298)
T 3pls_A 245 RR-----------LPQ-----------PEYCPDSLYQVMQQCWEADPAVRPTFRVLVGEVEQIVSALLGDH 293 (298)
T ss_dssp CC-----------CCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHCCSCC
T ss_pred CC-----------CCC-----------CccchHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHHHhccc
Confidence 00 000 01223467899999999999999999999999999998876543
No 174
>2h34_A Serine/threonine-protein kinase PKNE; apoenzyme, transferase; 2.80A {Mycobacterium tuberculosis}
Probab=100.00 E-value=1.2e-37 Score=344.00 Aligned_cols=263 Identities=20% Similarity=0.232 Sum_probs=199.2
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccc---hHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGG---SKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
..++|.+.+.||+|+||.||+|++..+++.||||+++...... .+.+.+|++++++++||||+++++++...
T Consensus 32 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~----- 106 (309)
T 2h34_A 32 QFGPYRLRRLVGRGGMGDVYEAEDTVRERIVALKLMSETLSSDPVFRTRMQREARTAGRLQEPHVVPIHDFGEID----- 106 (309)
T ss_dssp --CCEEEEEEEEECSSSEEEEEEETTTTEEEEEEECGGGGGGSHHHHHHHHHHHHHHTTCCCTTBCCEEEEEEET-----
T ss_pred EeccEEEEEEEcCCCCeeEEEEEEcCCCeEEEEEecCcccccCHHHHHHHHHHHHHHhhcCCCCeeEEEEEEeeC-----
Confidence 3578999999999999999999999899999999996543322 36788999999999999999999997653
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++++|.+++.... .+++.+++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|
T Consensus 107 ~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~NIl~~~~~~~kl~D 177 (309)
T 2h34_A 107 GQLYVDMRLINGVDLAAMLRRQG------PLAPPRAVAIVRQIGSALDAAHAA---GATHRDVKPENILVSADDFAYLVD 177 (309)
T ss_dssp TEEEEEEECCCCEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECS
T ss_pred CeEEEEEEecCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---cCCcCCCChHHEEEcCCCCEEEec
Confidence 67899999999999999998754 389999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+++....... .......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .......
T Consensus 178 fg~~~~~~~~~~-------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~--~~~~~~~ 248 (309)
T 2h34_A 178 FGIASATTDEKL-------TQLGNTVGTLYYMAPERFSESHATYRADIYALTCVLYECLTGSPPYQGDQLS--VMGAHIN 248 (309)
T ss_dssp CCC-----------------------CCGGGCCGGGTCC----CCCHHHHHHHHHHHHHHSSCSSCSCHHH--HHHHHHH
T ss_pred CccCcccccccc-------ccccccCCCcCccCHHHHcCCCCCchHhHHHHHHHHHHHHHCCCCCCCchHH--HHHHHhc
Confidence 999986654221 1122356899999999999999999999999999999999999999743211 1111110
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHHHHHhh
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-EMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-t~~evl~~L~~i~~~~ 1004 (1009)
. .... +. .....++.++.+++.+||+.||++|| +++++++.|+.+.+..
T Consensus 249 ----~--------~~~~-~~-------~~~~~~~~~l~~li~~~l~~dP~~Rp~s~~~l~~~l~~~l~~~ 298 (309)
T 2h34_A 249 ----Q--------AIPR-PS-------TVRPGIPVAFDAVIARGMAKNPEDRYVTCGDLSAAAHAALATA 298 (309)
T ss_dssp ----S--------CCCC-GG-------GTSTTCCTHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHTCC--
T ss_pred ----c--------CCCC-cc-------ccCCCCCHHHHHHHHHhccCCHHHHHHhHHHHHHHHHHHHHhh
Confidence 0 0000 00 00112234578999999999999999 9999999998765544
No 175
>3kmu_A ILK, integrin-linked kinase; cell adhesion, ANK repeat, ATP-binding, cell junction, cell membrane, integrin-binding protein, membrane, nucleotide- binding; 1.80A {Homo sapiens} SCOP: d.144.1.0 PDB: 3kmw_A* 3rep_A*
Probab=100.00 E-value=8.4e-38 Score=338.39 Aligned_cols=255 Identities=24% Similarity=0.349 Sum_probs=204.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|++. ++.||||+++.... ...+.+.+|++++++++||||+++++++... ....
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~~avK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---~~~~ 83 (271)
T 3kmu_A 9 FKQLNFLTKLNENHSGELWKGRWQ--GNDIVVKVLKVRDWSTRKSRDFNEECPRLRIFSHPNVLPVLGACQSP---PAPH 83 (271)
T ss_dssp GGGCEEEEEEEEETTEEEEEEEET--TEEEEEEEECCTTCCHHHHHHHHHHGGGGCCCSCTTEECEEEEECTT---TSSS
T ss_pred HHHhHHHHHhcCCCcceEEEEEEC--CeeEEEEEecccccCHHHHHHHHHHHHHHHhcCCCchhheEEEEccC---CCCC
Confidence 457899999999999999999984 89999999975432 2345789999999999999999999997542 2356
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceecCCCCCceeeCCCCceEEec
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPP--IVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~--ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
.++||||+++|+|.+++..... ..+++.+++.++.|++.||+|||++ + |+||||||+||+++.++.++++|
T Consensus 84 ~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~~~i~H~dikp~Nil~~~~~~~~l~~ 156 (271)
T 3kmu_A 84 PTLITHWMPYGSLYNVLHEGTN----FVVDQSQAVKFALDMARGMAFLHTL---EPLIPRHALNSRSVMIDEDMTARISM 156 (271)
T ss_dssp CEEEEECCTTCBHHHHHHSCSS----CCCCHHHHHHHHHHHHHHHHHHTTS---SSCCTTCCCSGGGEEECTTSCEEEEG
T ss_pred eEeeecccCCCcHHHHHhhccc----CCCCHHHHHHHHHHHHHHHHHHhcC---CCceecCCCccceEEEcCCcceeEEe
Confidence 7999999999999999987543 2489999999999999999999998 7 99999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCC---cccchHHHHHHHHHHhCCCCCcccccCCccHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASM---RGGVYSYGILLLEIFTRRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~---~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~ 932 (1009)
||++..... ....||+.|+|||++.+..++. ++|||||||++|||++|+.||...... .
T Consensus 157 ~~~~~~~~~-------------~~~~~t~~y~aPE~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~~-----~ 218 (271)
T 3kmu_A 157 ADVKFSFQS-------------PGRMYAPAWVAPEALQKKPEDTNRRSADMWSFAVLLWELVTREVPFADLSNM-----E 218 (271)
T ss_dssp GGSCCTTSC-------------TTCBSCGGGSCHHHHHSCGGGSCHHHHHHHHHHHHHHHHHHCSCTTTTSCHH-----H
T ss_pred ccceeeecc-------------cCccCCccccChhhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCccccChH-----H
Confidence 998764322 1246899999999988776554 799999999999999999999743221 1
Q ss_pred HHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQ 1002 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~ 1002 (1009)
......... ..+.. +..+..++.+++.+||+.||++|||++|+++.|+++.+
T Consensus 219 ~~~~~~~~~----~~~~~--------------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~~L~~l~~ 270 (271)
T 3kmu_A 219 IGMKVALEG----LRPTI--------------PPGISPHVSKLMKICMNEDPAKRPKFDMIVPILEKMQD 270 (271)
T ss_dssp HHHHHHHSC----CCCCC--------------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHCC
T ss_pred HHHHHHhcC----CCCCC--------------CCCCCHHHHHHHHHHcCCChhhCcCHHHHHHHHHHhhc
Confidence 111110000 00000 01223457899999999999999999999999998865
No 176
>2eue_A Carbon catabolite derepressing protein kinase; kinase domain; 2.20A {Saccharomyces cerevisiae} PDB: 3fam_A 3hyh_A 3dae_A 2fh9_A 3mn3_A
Probab=100.00 E-value=5e-38 Score=340.94 Aligned_cols=247 Identities=28% Similarity=0.395 Sum_probs=180.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|++.+.||+|+||+||+|++..+++.||||+++... ....+.+.+|++++++++||||+++++++... .
T Consensus 12 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~ 86 (275)
T 2eue_A 12 IGNYQIVKTLGEGSFAKVKLAYHTTTGQKVALKIINKKVLAKSDMQGRIEREISYLRLLRHPHIIKLYDVIKSK-----D 86 (275)
T ss_dssp CCCBCCCC---------EEEEECTTTCCEEEEEEECSCC-----CHHHHHHHHHHHHHCCCTTBCCEEEEEECS-----S
T ss_pred ccceEEEEEEEcCCCEEEEEEEECCCCCEEEEEEEEhhhcchHHHHHHHHHHHHHHHhCCCCCeEEEEEEEecC-----C
Confidence 358999999999999999999998899999999996432 22356789999999999999999999997643 6
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+ ++++.+++.... .+++.+++.++.|++.|+.|||+. +|+||||||+||+++.++.+||+||
T Consensus 87 ~~~lv~e~~-~~~l~~~~~~~~------~~~~~~~~~~~~~i~~~l~~LH~~---~i~H~dikp~Nil~~~~~~~kl~Df 156 (275)
T 2eue_A 87 EIIMVIEYA-GNELFDYIVQRD------KMSEQEARRFFQQIISAVEYCHRH---KIVHRDLKPENLLLDEHLNVKIADF 156 (275)
T ss_dssp CEEEEEECC-CEEHHHHHHTSS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCS
T ss_pred eEEEEehhc-CCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CCeeccCChHhEEECCCCCEEEeec
Confidence 789999999 788998887654 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++...... ......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||.... ......
T Consensus 157 g~~~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~-----~~~~~~ 222 (275)
T 2eue_A 157 GLSNIMTDGN---------FLKTSCGSPNYAAPEVISGKLYAGPEVDVWSCGVILYVMLCRRLPFDDES-----IPVLFK 222 (275)
T ss_dssp SCC------------------------CTTCCHHHHCC-----THHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHH
T ss_pred ccceeccCcc---------cccCCCCCcCcCCceeeeCCCCCCcccchHHHHHHHHHHHhCCCCCCCCC-----HHHHHH
Confidence 9998654321 1223468999999999988776 789999999999999999999997432 111111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... ... . ..+ ......+.+++.+|++.||++|||++|+++
T Consensus 223 ~~~-~~~-------~-~~~-----------~~~~~~~~~li~~~l~~dP~~Rps~~e~l~ 262 (275)
T 2eue_A 223 NIS-NGV-------Y-TLP-----------KFLSPGAAGLIKRMLIVNPLNRISIHEIMQ 262 (275)
T ss_dssp HHH-HTC-------C-CCC-----------TTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred HHH-hCC-------C-CCC-----------ccCCHHHHHHHHHHhhcCHhHCCCHHHHhh
Confidence 100 000 0 000 012235779999999999999999999975
No 177
>3i6u_A CDS1, serine/threonine-protein kinase CHK2; Ser/Thr protein kinase, FHA domain, ATP-binding, cell cycle, mutation, LI-fraumeni syndrome, magnesium; 3.00A {Homo sapiens} PDB: 3i6w_A
Probab=100.00 E-value=9e-38 Score=359.27 Aligned_cols=253 Identities=23% Similarity=0.298 Sum_probs=194.0
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--------cchHHHHHHHHHHHhcCCCCcceEEeeeecc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--------GGSKSFAAECEALRSIRHRNLIKIVTICSSI 770 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 770 (1009)
..++|.+.+.||+|+||+||+|.++.+++.||||++..... .....+.+|++++++++||||+++++++..
T Consensus 133 ~~~~y~~~~~LG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~l~~~~~~- 211 (419)
T 3i6u_A 133 LRDEYIMSKTLGSGACGEVKLAFERKTCKKVAIRIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA- 211 (419)
T ss_dssp HHTTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGGTTC--------CCHHHHHHHHHHCCCTTBCCCCEEEES-
T ss_pred hhccEEEEeEEeeCCCeEEEEEEECCCCcEEEEEEEEechhcccccccchhHHHHHHHHHHHHhCCCCCEeeEEEEEec-
Confidence 35689999999999999999999999999999999965421 112358899999999999999999998643
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC--
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD-- 848 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~-- 848 (1009)
...++||||+++|+|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 212 -----~~~~lv~e~~~~g~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~ivHrDlkp~NIll~~~~~ 277 (419)
T 3i6u_A 212 -----EDYYIVLELMEGGELFDKVVGNK------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEE 277 (419)
T ss_dssp -----SEEEEEEECCTTCBGGGGTSSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSS
T ss_pred -----CceEEEEEcCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCCC
Confidence 45789999999999999887654 389999999999999999999999 99999999999999654
Q ss_pred -CceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC---CCCCCcccchHHHHHHHHHHhCCCCCcccc
Q 047768 849 -MVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG---GEASMRGGVYSYGILLLEIFTRRRPTESMF 924 (1009)
Q Consensus 849 -~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---~~~~~~~DvwS~Gvvl~elltg~~p~~~~~ 924 (1009)
+.+||+|||+++..... .......||+.|+|||++.+ ..++.++|||||||++|||++|+.||....
T Consensus 278 ~~~~kl~DFG~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~~lltg~~pf~~~~ 348 (419)
T 3i6u_A 278 DCLIKITDFGHSKILGET---------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHR 348 (419)
T ss_dssp SCCEEECCSSTTTSCC--------------------CTTCCTTTTC----CTTHHHHHHHHHHHHHHHHHHSSCSSCCCS
T ss_pred cceEEEeecccceecCCC---------ccccccCCCCCccCceeeecCCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCc
Confidence 45999999999876532 12234679999999999864 678899999999999999999999997533
Q ss_pred cCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 925 NEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... ......... .....+.. ......++.+++.+|++.||++|||++|+++
T Consensus 349 ~~~-~~~~~i~~~-----------~~~~~~~~--------~~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 399 (419)
T 3i6u_A 349 TQV-SLKDQITSG-----------KYNFIPEV--------WAEVSEKALDLVKKLLVVDPKARFTTEEALR 399 (419)
T ss_dssp SSC-CHHHHHHTT-----------CCCCCHHH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred chH-HHHHHHhcC-----------CCCCCchh--------hcccCHHHHHHHHHHccCChhHCcCHHHHhC
Confidence 221 222221111 00000100 0012346789999999999999999999986
No 178
>3sv0_A Casein kinase I-like; typical kinase domain fold, cytosol, transferase; 2.00A {Oryza sativa japonica group}
Probab=100.00 E-value=2e-37 Score=359.81 Aligned_cols=269 Identities=22% Similarity=0.275 Sum_probs=208.7
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|++..+++.||||+++.... ...+.+|+++++.++|++.+..+.++.. .....+
T Consensus 6 ~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~vAvK~~~~~~~--~~~~~~E~~il~~L~~~~~i~~i~~~~~----~~~~~~ 79 (483)
T 3sv0_A 6 GNKFRLGRKIGSGSFGEIYLGTNIQTNEEVAIKLENVKTK--HPQLLYESKIYRILQGGTGIPNVRWFGV----EGDYNV 79 (483)
T ss_dssp TTTEECCCCCEECSSCEEEEEEETTTCCEEEEEEEETTCS--SCCHHHHHHHHHHTTTSTTCCCEEEEEE----ETTEEE
T ss_pred CCcEEEEEEEeeCCCEEEEEEEECCCCcEEEEEEeccccc--cHHHHHHHHHHHHhcCCCCCCeEEEEEe----eCCEEE
Confidence 3689999999999999999999988999999998865433 3568899999999987554444444322 236789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee---CCCCceEEecc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL---DHDMVAHVSDF 856 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill---~~~~~~kl~Df 856 (1009)
+||||+ +++|.+++..... .+++.+++.|+.||+.||+|||++ +||||||||+|||+ +.++.+||+||
T Consensus 80 lvme~~-g~sL~~ll~~~~~-----~l~~~~~~~i~~qi~~aL~yLH~~---gIvHrDIKP~NILl~~~~~~~~vkL~DF 150 (483)
T 3sv0_A 80 LVMDLL-GPSLEDLFNFCSR-----KLSLKTVLMLADQMINRVEFVHSK---SFLHRDIKPDNFLMGLGRRANQVYIIDF 150 (483)
T ss_dssp EEEECC-CCBHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECCGGGTTCEEECCC
T ss_pred EEEECC-CCCHHHHHHhhcC-----CCCHHHHHHHHHHHHHHHHHHHHC---CEeecccCcceEEEecCCCCCeEEEEeC
Confidence 999999 9999999986543 399999999999999999999999 99999999999999 68899999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCC--ccHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEG--LTLHEFA 934 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~--~~~~~~~ 934 (1009)
|+++........... .........||+.|+|||++.+..++.++|||||||++|||++|+.||....... ..+..+.
T Consensus 151 Gla~~~~~~~~~~~~-~~~~~~~~~gt~~Y~aPE~~~~~~~s~~sDvwSlGvil~elltG~~Pf~~~~~~~~~~~~~~i~ 229 (483)
T 3sv0_A 151 GLAKKYRDTSTHQHI-PYRENKNLTGTARYASVNTHLGIEQSRRDDLESLGYVLMYFLRGSLPWQGLKAGTKKQKYEKIS 229 (483)
T ss_dssp TTCEECBCTTTCCBC-CCCCCCCCCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTSSCCCSSHHHHHHHHH
T ss_pred CcceeccCCcccccc-ccccccccCCCccccCHHHhcCCCCChHHHHHHHHHHHHHHHhCCCCCccccchhHHHHHHHHh
Confidence 999887654321111 1122235679999999999999999999999999999999999999997643321 1111111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
..........+. ..++.++.+++..||+.||++||++.+|++.|+++...
T Consensus 230 ~~~~~~~~~~l~-------------------~~~p~~l~~li~~cl~~dP~~RPs~~el~~~L~~l~~~ 279 (483)
T 3sv0_A 230 EKKVATSIEALC-------------------RGYPTEFASYFHYCRSLRFDDKPDYSYLKRLFRDLFIR 279 (483)
T ss_dssp HHHHHSCHHHHH-------------------TTSCHHHHHHHHHHHTCCTTCCCCHHHHHHHHHHHHHH
T ss_pred hccccccHHHHh-------------------cCCcHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHH
Confidence 111111111110 12245688999999999999999999999999988654
No 179
>2wqm_A Serine/threonine-protein kinase NEK7; ATP-binding, polymorphism, metal-binding, cell cycle kinase, mitosis, cytoplasm, magnesium, transferase; 2.10A {Homo sapiens} PDB: 2wqn_A*
Probab=100.00 E-value=9.4e-38 Score=345.19 Aligned_cols=267 Identities=22% Similarity=0.301 Sum_probs=200.7
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc---cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK---GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|.+..+|+.||||+++.... .....+.+|++++++++||||+++++++... .
T Consensus 31 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~ 105 (310)
T 2wqm_A 31 LANFRIEKKIGRGQFSEVYRAACLLDGVPVALKKVQIFDLMDAKARADCIKEIDLLKQLNHPNVIKYYASFIED-----N 105 (310)
T ss_dssp GGGEEEEEEEECC--CEEEEEEETTTCCEEEEEEECTTSSCCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-----T
T ss_pred ccceEEEEeecCCCCceEEEEEEcCCCceEEEEeeehhhccCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEEcC-----C
Confidence 4579999999999999999999988999999999975322 2345788999999999999999999997653 6
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.+++...... ...+++.+++.++.|++.||.|||+. +|+||||||+||+++.++.+||+||
T Consensus 106 ~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIl~~~~~~~kl~Df 180 (310)
T 2wqm_A 106 ELNIVLELADAGDLSRMIKHFKKQ--KRLIPERTVWKYFVQLCSALEHMHSR---RVMHRDIKPANVFITATGVVKLGDL 180 (310)
T ss_dssp EEEEEEECCCSCBHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCC
T ss_pred cEEEEEecCCCCCHHHHHHHhccc--ccCCCHHHHHHHHHHHHHHHHHHhhC---CeeCCCCcHHHEEEcCCCCEEEEec
Confidence 789999999999999999753211 12489999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++...... .......|++.|+|||++.+..++.++||||||+++|||++|+.||...... .......
T Consensus 181 g~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Dv~slG~il~~l~~g~~p~~~~~~~---~~~~~~~ 249 (310)
T 2wqm_A 181 GLGRFFSSKT--------TAAHSLVGTPYYMSPERIHENGYNFKSDIWSLGCLLYEMAALQSPFYGDKMN---LYSLCKK 249 (310)
T ss_dssp --------------------------CCSSCCHHHHTTCCCCHHHHHHHHHHHHHHHHHSSCTTC---CC---HHHHHHH
T ss_pred cceeeecCCC--------ccccccCCCeeEeChHHhCCCCCCchhhHHHHHHHHHHHHhCCCCCcccchh---HHHHHHH
Confidence 9998654321 1122356899999999999999999999999999999999999998643211 1111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
.... .....+ ...+..++.+++.+||+.||++|||+.||++.|++++....
T Consensus 250 ~~~~--------~~~~~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~~il~~l~~l~~~~~ 300 (310)
T 2wqm_A 250 IEQC--------DYPPLP----------SDHYSEELRQLVNMCINPDPEKRPDVTYVYDVAKRMHACTA 300 (310)
T ss_dssp HHTT--------CSCCCC----------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHHC
T ss_pred hhcc--------cCCCCc----------ccccCHHHHHHHHHHcCCChhhCCCHHHHHHHHHHHHHhhh
Confidence 1000 000000 01223467899999999999999999999999999987654
No 180
>2pvf_A Fibroblast growth factor receptor 2; kinase domain fold consisting of N- and C-lobes, transferase; HET: PTR ACP; 1.80A {Homo sapiens} PDB: 3cly_A* 2pzr_A* 2pzp_A* 2pvy_A* 2pz5_A* 2q0b_A* 2pwl_A* 2py3_A* 3ri1_A* 1gjo_A 1oec_A* 3b2t_A* 3gql_A* 3gqi_A* 1fgk_A 1fgi_A* 1agw_A 2fgi_A* 3js2_A* 3ky2_A ...
Probab=100.00 E-value=1e-37 Score=348.56 Aligned_cols=269 Identities=22% Similarity=0.345 Sum_probs=209.8
Q ss_pred HhccCccCCcccccCCceEEEEEEe-------cCCeEEEEEEeecccc-cchHHHHHHHHHHHhc-CCCCcceEEeeeec
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLH-------ENGMLVAVKVINLEQK-GGSKSFAAECEALRSI-RHRNLIKIVTICSS 769 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~-------~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~ 769 (1009)
..++|.+.+.||+|+||.||+|++. .++..||||+++.... ...+.+.+|+++++++ +||||+++++++..
T Consensus 33 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~ 112 (334)
T 2pvf_A 33 PRDKLTLGKPLGEGAFGQVVMAEAVGIDKDKPKEAVTVAVKMLKDDATEKDLSDLVSEMEMMKMIGKHKNIINLLGACTQ 112 (334)
T ss_dssp CGGGEEEEEEEEECSSCEEEEEEETTCSTTCC---CEEEEEECCTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS
T ss_pred CHhHeEEeeEEeecCceeEEEeEeccccccccccceEEEEeeeccCCcHHHHHHHHHHHHHHHHhhcCCCEeeEEEEEcc
Confidence 3578999999999999999999985 3567899999965432 2345788999999999 89999999999754
Q ss_pred cccCCCceEEEEEeccCCCCHHHHHhccCCCC----------CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCC
Q 047768 770 IDFKGVDFKALVYEYMQNGSLEEWLHQRDDQL----------GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLK 839 (1009)
Q Consensus 770 ~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk 839 (1009)
....++||||+++|+|.+++....... ....+++.+++.++.|++.||+|||+. +|+|||||
T Consensus 113 -----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlk 184 (334)
T 2pvf_A 113 -----DGPLYVIVEYASKGNLREYLRARRPPGMEYSYDINRVPEEQMTFKDLVSCTYQLARGMEYLASQ---KCIHRDLA 184 (334)
T ss_dssp -----SSCCEEEEECCTTCBHHHHHHTTSCTTCCSCC--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCS
T ss_pred -----CCceEEEEECCCCCcHHHHHHHhccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCc
Confidence 357899999999999999998754211 112489999999999999999999999 99999999
Q ss_pred CCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCC
Q 047768 840 PSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRR 918 (1009)
Q Consensus 840 ~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~ 918 (1009)
|+||+++.++.+||+|||+++....... ........+|+.|+|||++.+..++.++||||||+++|||++ |+.
T Consensus 185 p~NIll~~~~~~kL~Dfg~~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~ 258 (334)
T 2pvf_A 185 ARNVLVTENNVMKIADFGLARDINNIDY------YKKTTNGRLPVKWMAPEALFDRVYTHQSDVWSFGVLMWEIFTLGGS 258 (334)
T ss_dssp GGGEEECTTCCEEECCCTTCEECTTTSS------EECCSCCCCCGGGCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCC
T ss_pred cceEEEcCCCCEEEcccccccccccccc------ccccCCCCcccceeChHHhcCCCcChHHHHHHHHHHHHHHHhCCCC
Confidence 9999999999999999999987654321 011223457889999999998999999999999999999999 999
Q ss_pred CCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHH
Q 047768 919 PTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLC 998 (1009)
Q Consensus 919 p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~ 998 (1009)
||.... ..+........ . .... ...+..++.+++.+||+.||.+|||+.|+++.|+
T Consensus 259 p~~~~~-----~~~~~~~~~~~-----~---~~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~ 314 (334)
T 2pvf_A 259 PYPGIP-----VEELFKLLKEG-----H---RMDK-----------PANCTNELYMMMRDCWHAVPSQRPTFKQLVEDLD 314 (334)
T ss_dssp SSTTCC-----HHHHHHHHHHT-----C---CCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHH
T ss_pred CcCcCC-----HHHHHHHHhcC-----C---CCCC-----------CccCCHHHHHHHHHHccCChhhCcCHHHHHHHHH
Confidence 986432 11211111000 0 0000 0123346789999999999999999999999999
Q ss_pred HHHHhhh
Q 047768 999 HARQNFL 1005 (1009)
Q Consensus 999 ~i~~~~~ 1005 (1009)
++.+...
T Consensus 315 ~l~~~~~ 321 (334)
T 2pvf_A 315 RILTLTT 321 (334)
T ss_dssp HHHHHHC
T ss_pred HHHhccc
Confidence 9877554
No 181
>1u5q_A Serine/threonine protein kinase TAO2; transferase; HET: SEP; 2.10A {Rattus norvegicus} SCOP: d.144.1.7 PDB: 1u5r_A* 2gcd_A*
Probab=100.00 E-value=4.7e-38 Score=352.19 Aligned_cols=247 Identities=26% Similarity=0.327 Sum_probs=198.4
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc---chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG---GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~---~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
+.|...+.||+|+||+||+|++..+++.||||++...... ..+.+.+|++++++++||||+++++++... ..
T Consensus 54 ~~y~~~~~lG~G~~g~Vy~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~-----~~ 128 (348)
T 1u5q_A 54 KLFSDLREIGHGSFGAVYFARDVRNSEVVAIKKMSYSGKQSNEKWQDIIKEVRFLQKLRHPNTIQYRGCYLRE-----HT 128 (348)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEESCSSCHHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TE
T ss_pred hheeeeeEEccCCCEEEEEEEEccCCeEEEEEEEccccccchHHHHHHHHHHHHHHhCCCCCEeeEEEEEEEC-----Ce
Confidence 4588889999999999999999889999999999754322 235688999999999999999999997653 67
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+. |++.+++..... .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||
T Consensus 129 ~~lv~e~~~-g~l~~~l~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~kL~DfG 199 (348)
T 1u5q_A 129 AWLVMEYCL-GSASDLLEVHKK-----PLQEVEIAAVTHGALQGLAYLHSH---NMIHRDVKAGNILLSEPGLVKLGDFG 199 (348)
T ss_dssp EEEEEECCS-EEHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTEEEECCCT
T ss_pred EEEEEecCC-CCHHHHHHHhcC-----CCCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEECCCCCEEEeecc
Confidence 899999996 789888875543 389999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccC---CCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL---GGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
+++..... ....||+.|+|||++. ++.++.++|||||||++|||++|+.||...... ...
T Consensus 200 ~a~~~~~~------------~~~~gt~~y~aPE~~~~~~~~~~~~~~DiwslG~il~ell~g~~p~~~~~~~-----~~~ 262 (348)
T 1u5q_A 200 SASIMAPA------------NSFVGTPYWMAPEVILAMDEGQYDGKVDVWSLGITCIELAERKPPLFNMNAM-----SAL 262 (348)
T ss_dssp TCBSSSSB------------CCCCSCGGGCCHHHHHTTSSCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHH
T ss_pred CceecCCC------------CcccCCcceeCHhhhccccCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCChH-----HHH
Confidence 99865421 2356899999999874 577899999999999999999999998643211 111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
...... ..+... ...+...+.+++.+||+.||++|||++|+++.
T Consensus 263 ~~~~~~-----~~~~~~-------------~~~~~~~l~~li~~~l~~dP~~Rps~~~ll~h 306 (348)
T 1u5q_A 263 YHIAQN-----ESPALQ-------------SGHWSEYFRNFVDSCLQKIPQDRPTSEVLLKH 306 (348)
T ss_dssp HHHHHS-----CCCCCC-------------CTTSCHHHHHHHHHHTCSSGGGSCCHHHHTTC
T ss_pred HHHHhc-----CCCCCC-------------CCCCCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 110000 000000 01223457799999999999999999999754
No 182
>4fl3_A Tyrosine-protein kinase SYK; transferase; HET: ANP; 1.90A {Homo sapiens} PDB: 4fl2_A* 1a81_A* 1csy_A* 1csz_A*
Probab=100.00 E-value=4.4e-38 Score=378.86 Aligned_cols=255 Identities=25% Similarity=0.344 Sum_probs=201.5
Q ss_pred CcccccCCceEEEEEEe--cCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEEEEE
Q 047768 707 NTIGRGSFGFVYKGVLH--ENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKALVY 782 (1009)
Q Consensus 707 ~~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv~ 782 (1009)
+.||+|+||+||+|.+. .+++.||||+++.... ...+.+.+|++++++++||||++++++|.. ...++||
T Consensus 375 ~~LG~G~fG~Vy~~~~~~~~~~~~vAvK~~~~~~~~~~~~~~~~~E~~il~~l~hpnIv~l~~~~~~------~~~~lv~ 448 (635)
T 4fl3_A 375 KELGSGNFGTVKKGYYQMKKVVKTVAVKILKNEANDPALKDELLAEANVMQQLDNPYIVRMIGICEA------ESWMLVM 448 (635)
T ss_dssp EEEEECSSEEEEEEEEECSSCEEEEEEEEECGGGGCGGGHHHHHHHHHHHHHCCCTTBCCEEEEEES------SSEEEEE
T ss_pred CEeccCCCEEEEEEEEcCCCcceEEEEEEeccccCCHHHHHHHHHHHHHHHhCCCCCEeeEEEEEec------CCEEEEE
Confidence 47999999999999764 4568999999975433 235789999999999999999999999853 3478999
Q ss_pred eccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccccccc
Q 047768 783 EYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFL 862 (1009)
Q Consensus 783 e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~ 862 (1009)
||+++|+|.++++... .+++.+++.++.|++.||+|||++ +||||||||+|||++.++.+||+|||+++..
T Consensus 449 E~~~~g~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~yLH~~---~iiHrDLkp~NILl~~~~~~kL~DFGla~~~ 519 (635)
T 4fl3_A 449 EMAELGPLNKYLQQNR------HVKDKNIIELVHQVSMGMKYLEES---NFVHRDLAARNVLLVTQHYAKISDFGLSKAL 519 (635)
T ss_dssp ECCTTEEHHHHHHHCT------TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEECCTTHHHHT
T ss_pred EccCCCCHHHHHhhCC------CCCHHHHHHHHHHHHHHHHHHHHC---CEeCCCCChHhEEEeCCCCEEEEEcCCcccc
Confidence 9999999999998654 389999999999999999999999 9999999999999999999999999999877
Q ss_pred CCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhccch
Q 047768 863 SASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRALPEK 941 (1009)
Q Consensus 863 ~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~~~~ 941 (1009)
...... ........+|+.|+|||++.+..++.++|||||||++|||++ |+.||...... +........
T Consensus 520 ~~~~~~-----~~~~~~~~~t~~y~APE~~~~~~~~~~sDvwSlGv~l~ellt~G~~Pf~~~~~~-----~~~~~i~~~- 588 (635)
T 4fl3_A 520 RADENY-----YKAQTHGKWPVKWYAPECINYYKFSSKSDVWSFGVLMWEAFSYGQKPYRGMKGS-----EVTAMLEKG- 588 (635)
T ss_dssp TC------------------CGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTTCCSSTTCCHH-----HHHHHHHTT-
T ss_pred ccCccc-----cccccCCCCceeeeChhhhcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCCHH-----HHHHHHHcC-
Confidence 543211 112223457889999999999999999999999999999999 99999754321 111110000
Q ss_pred hhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 942 VMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 942 ~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
.... .+..++.++.+++..||+.||++||++++|++.|+.+..+..
T Consensus 589 -------~~~~-----------~p~~~~~~l~~li~~cl~~dP~~RPs~~~l~~~L~~~~~~l~ 634 (635)
T 4fl3_A 589 -------ERMG-----------CPAGCPREMYDLMNLCWTYDVENRPGFAAVELRLRNYYYDVV 634 (635)
T ss_dssp -------CCCC-----------CCTTCCHHHHHHHHHHTCSSTTTSCCHHHHHHHHHHHHHHHC
T ss_pred -------CCCC-----------CCCCCCHHHHHHHHHHcCCCHhHCcCHHHHHHHHHHHHHHhc
Confidence 0000 011344568899999999999999999999999999887654
No 183
>3fdn_A Serine/threonine-protein kinase 6; aurora kinase inhibitors, virtual screening, X-RAY CO- crystal analysis, structure-based drug design (SBDD); HET: MMH; 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 3k5u_A* 3m11_A* 2c6e_A* 1muo_A* 2bmc_A* 2j4z_A* 1ol6_A* 3up2_A* 3unz_A* 3uo5_A* 3uo6_A* 3uod_A* 3uoh_A* 3uoj_A* 3uok_A* 3uo4_A* 3uol_A* 3up7_A* 4dea_A* 4deb_A* ...
Probab=100.00 E-value=7.1e-38 Score=340.55 Aligned_cols=249 Identities=22% Similarity=0.355 Sum_probs=201.2
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
+.++|.+.+.||+|+||+||+|.+..+++.||||++.... ......+.+|++++++++||||+++++++...
T Consensus 7 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~----- 81 (279)
T 3fdn_A 7 ALEDFEIGRPLGKGKFGNVYLAREKQSKFILALKVLFKAQLEKAGVEHQLRREVEIQSHLRHPNILRLYGYFHDA----- 81 (279)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHHTCHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----
T ss_pred ecccEEEeeEEecCCCeEEEEEEEccCCcEEEEEEEeccccchhhHHHHHHHHHHHHHcCCCCCCcchhheEecC-----
Confidence 3568999999999999999999999999999999986432 22356789999999999999999999997543
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.+++..... +++..+..++.|++.|++|||+. +|+||||||+||+++.++.+||+|
T Consensus 82 ~~~~lv~e~~~~~~l~~~l~~~~~------~~~~~~~~~~~qi~~~l~~LH~~---~i~H~dlkp~Nili~~~~~~~l~D 152 (279)
T 3fdn_A 82 TRVYLILEYAPLGTVYRELQKLSK------FDEQRTATYITELANALSYCHSK---RVIHRDIKPENLLLGSAGELKIAD 152 (279)
T ss_dssp SEEEEEECCCTTEEHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHTT---TCEECCCCGGGEEECTTSCEEECS
T ss_pred CEEEEEEecCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHhC---CEecccCChHhEEEcCCCCEEEEe
Confidence 678999999999999999987643 89999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||++...... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||.... ......
T Consensus 153 fg~~~~~~~~----------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~~~ 217 (279)
T 3fdn_A 153 FGWSVHAPSS----------RRTDLCGTLDYLPPEMIEGRMHDEKVDLWSLGVLCYEFLVGKPPFEANT-----YQETYK 217 (279)
T ss_dssp CCEESCC------------------CCCCTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCTTCCSS-----HHHHHH
T ss_pred ccccccCCcc----------cccccCCCCCccCHhHhccCCCCccchhHhHHHHHHHHHHCCCCCCCCc-----HHHHHH
Confidence 9998654332 1223568999999999999999999999999999999999999997432 111111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.. ... .... +......+.+++.+|++.||++|||+.|+++.
T Consensus 218 ~~-----~~~-~~~~--------------~~~~~~~~~~li~~~l~~~p~~Rps~~e~l~h 258 (279)
T 3fdn_A 218 RI-----SRV-EFTF--------------PDFVTEGARDLISRLLKHNPSQRPMLREVLEH 258 (279)
T ss_dssp HH-----HHT-CCCC--------------CTTSCHHHHHHHHHHCCSSGGGSCCHHHHHHC
T ss_pred HH-----HhC-CCCC--------------CCcCCHHHHHHHHHHhccChhhCCCHHHHhhC
Confidence 10 000 0000 01123457799999999999999999999874
No 184
>2yex_A Serine/threonine-protein kinase CHK1; transferase, cell cycle; HET: YEX; 1.30A {Homo sapiens} PDB: 2x8e_A* 2ydk_A* 2ydj_A* 2yer_A* 2ydi_A* 1nvq_A* 1nvr_A* 1nvs_A* 2wmq_A* 2wmr_A* 2wms_A* 2wmt_A* 2wmu_A* 2wmv_A* 2wmw_A* 2wmx_A* 2x8d_A* 2x8i_A* 2xey_A* 2xez_A* ...
Probab=100.00 E-value=1.7e-37 Score=337.06 Aligned_cols=254 Identities=22% Similarity=0.294 Sum_probs=204.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|++.+.||+|+||.||+|+++.+++.||||+++.... ...+.+.+|+++++.++||||+++++++... ...
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~ 80 (276)
T 2yex_A 6 VEDWDLVQTLGEGAYGEVQLAVNRVTEEAVAVKIVDMKRAVDCPENIKKEICINKMLNHENVVKFYGHRREG-----NIQ 80 (276)
T ss_dssp HHHEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEGGGCTTHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-----TEE
T ss_pred ecceEEEEEeecCCCcEEEEEEECCCCcEEEEEEeeeccchhhhHHHHHHHHHHHhcCCCCceeeeeEEEcC-----CEE
Confidence 4689999999999999999999998999999999975543 2346789999999999999999999997643 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||.
T Consensus 81 ~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~ 151 (276)
T 2yex_A 81 YLFLEYCSGGELFDRIEPDI------GMPEPDAQRFFHQLMAGVVYLHGI---GITHRDIKPENLLLDERDNLKISDFGL 151 (276)
T ss_dssp EEEEECCTTEEGGGGSBTTT------BCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEEEecCCCcHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHhC---CeeccCCChHHEEEccCCCEEEeeCCC
Confidence 99999999999999987643 389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
+........ ........||+.|+|||++.+..+ +.++||||||+++|||++|+.||............+...
T Consensus 152 ~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~~~~- 224 (276)
T 2yex_A 152 ATVFRYNNR------ERLLNKMCGTLPYVAPELLKRREFHAEPVDVWSCGIVLTAMLAGELPWDQPSDSCQEYSDWKEK- 224 (276)
T ss_dssp CEECEETTE------ECCBCCCCSCGGGCCGGGGTCSSBCHHHHHHHHHHHHHHHHHHSSCCCSCSCTTSHHHHHHHTT-
T ss_pred ccccCCCcc------hhcccCCccccCccChHHHhcCCCCCCcchHHHHHHHHHHHHhCCCCCCCCchHHHHHHHhhhc-
Confidence 986643211 112234568999999999988775 789999999999999999999997544332222222110
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.....+ .......+.+++.+|++.||++|||++|+++
T Consensus 225 -----------~~~~~~----------~~~~~~~~~~li~~~l~~~p~~Rps~~~il~ 261 (276)
T 2yex_A 225 -----------KTYLNP----------WKKIDSAPLALLHKILVENPSARITIPDIKK 261 (276)
T ss_dssp -----------CTTSTT----------GGGSCHHHHHHHHHHSCSSTTTSCCHHHHTT
T ss_pred -----------ccccCc----------hhhcCHHHHHHHHHHCCCCchhCCCHHHHhc
Confidence 000000 0112345779999999999999999999975
No 185
>3gbz_A Kinase, CMGC CDK; ssgcid, ATP-binding, nucleotide-binding, serine/threonine-protein kinase, transferase; 1.85A {Giardia lamblia} PDB: 3gc0_A*
Probab=100.00 E-value=4.8e-38 Score=350.28 Aligned_cols=275 Identities=21% Similarity=0.305 Sum_probs=195.0
Q ss_pred HHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 697 SKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 697 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
....++|.+.+.||+|+||+||+|++..+++.||||+++..... ..+.+.+|++++++++||||+++++++...
T Consensus 30 ~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~---- 105 (329)
T 3gbz_A 30 ATSIDRYRRITKLGEGTYGEVYKAIDTVTNETVAIKRIRLEHEEEGVPGTAIREVSLLKELQHRNIIELKSVIHHN---- 105 (329)
T ss_dssp --CGGGEEEEEEEEECSSSEEEEEEETTTTEEEEEEECCCCC--------CHHHHHHGGGCCCTTBCCEEEEEEET----
T ss_pred ccchhhEEEEEEEEecCCeEEEEEEECCCCceEEEEEEcccccccccchhHHHHHHHHHHcCCCCcceEEEEEecC----
Confidence 34567899999999999999999999999999999999644322 245678999999999999999999997643
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee-----CCCC
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL-----DHDM 849 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill-----~~~~ 849 (1009)
...++||||++ |+|.+++..... +++.+++.++.|++.||+|||++ +|+||||||+||++ +.++
T Consensus 106 -~~~~lv~e~~~-~~L~~~~~~~~~------~~~~~~~~i~~ql~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 174 (329)
T 3gbz_A 106 -HRLHLIFEYAE-NDLKKYMDKNPD------VSMRVIKSFLYQLINGVNFCHSR---RCLHRDLKPQNLLLSVSDASETP 174 (329)
T ss_dssp -TEEEEEEECCS-EEHHHHHHHCTT------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEEEC-----CC
T ss_pred -CEEEEEEecCC-CCHHHHHhhcCC------CCHHHHHHHHHHHHHHHHHHHhC---CEECCCCCHHHEEEecCCCCccc
Confidence 67899999997 599999987653 89999999999999999999999 99999999999999 4556
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCcccccCCc
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESMFNEGL 928 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~ 928 (1009)
.+||+|||+++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||......+
T Consensus 175 ~~kl~Dfg~a~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~- 245 (329)
T 3gbz_A 175 VLKIGDFGLARAFGIPI--------RQFTHEIITLWYRPPEILLGSRHYSTSVDIWSIACIWAEMLMKTPLFPGDSEID- 245 (329)
T ss_dssp EEEECCTTHHHHHC-------------------CCTTCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHHH-
T ss_pred eEEECcCCCccccCCcc--------cccCCCcCCccccCHHHhcCCCCCCcHHHHHHHHHHHHHHHHCCCCcCCCCHHH-
Confidence 69999999998764321 122335689999999998875 48999999999999999999999997532211
Q ss_pred cHHHHHHHh-ccch--hhhc--cCCCCCChhhhhh-hccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 929 TLHEFAKRA-LPEK--VMEI--VDPSLLPLEEERT-NSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 929 ~~~~~~~~~-~~~~--~~~~--~d~~l~~~~~~r~-~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
......... .+.. .... ........+..+. ............++.+++.+|++.||++|||++|+++
T Consensus 246 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 318 (329)
T 3gbz_A 246 QLFKIFEVLGLPDDTTWPGVTALPDWKQSFPKFRGKTLKRVLGALLDDEGLDLLTAMLEMDPVKRISAKNALE 318 (329)
T ss_dssp HHHHHHHHHCCCCTTTSTTGGGSTTCCTTCCCCCCCCHHHHHGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred HHHHHHHHhCCCchhhhhhhhhhhhhhhhhhhhccccHhhhcccccCHHHHHHHHHHccCChhhCCCHHHHhC
Confidence 111111111 1110 0000 0000000000000 0000001112356789999999999999999999975
No 186
>2r5t_A Serine/threonine-protein kinase SGK1; AGC protein kinase, apoptosis, ATP-binding, cytoplasm, endoplasmic reticulum, nucleotide-binding, nucleus; HET: ANP; 1.90A {Homo sapiens} PDB: 3hdm_A* 3hdn_A*
Probab=100.00 E-value=4.5e-38 Score=354.51 Aligned_cols=249 Identities=24% Similarity=0.269 Sum_probs=192.9
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc---cchHHHHHHHHH-HHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK---GGSKSFAAECEA-LRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||.||+|+++.+++.||||+++.... .....+.+|..+ ++.++||||+++++++.. .
T Consensus 37 ~~~y~~~~~lG~G~fg~V~~~~~~~~~~~~AiK~~~~~~~~~~~~~~~~~~e~~~ll~~~~hp~Iv~l~~~~~~-----~ 111 (373)
T 2r5t_A 37 PSDFHFLKVIGKGSFGKVLLARHKAEEVFYAVKVLQKKAILKKKEEKHIMSERNVLLKNVKHPFLVGLHFSFQT-----A 111 (373)
T ss_dssp GGGEEEEEEEECCTTCEEEEEEETTTCCEEEEEEEEGGGBC-------------CCBCCCCCTTBCCEEEEEEC-----S
T ss_pred hhheEEEEEEeeCCCeEEEEEEEcCCCCEEEEEEEEHHHhhhhHHHHHHHHHHHHHHHhCCCCCCCCEEEEEEe-----C
Confidence 4679999999999999999999999999999999975432 223456667766 567899999999998654 3
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++|+|.+++.+... +++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|
T Consensus 112 ~~~~lv~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---givHrDlkp~NIll~~~g~ikL~D 182 (373)
T 2r5t_A 112 DKLYFVLDYINGGELFYHLQRERC------FLEPRARFYAAEIASALGYLHSL---NIVYRDLKPENILLDSQGHIVLTD 182 (373)
T ss_dssp SEEEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECC
T ss_pred CEEEEEEeCCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEECCCCCEEEee
Confidence 688999999999999999987543 88999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+++...... ......+||+.|+|||++.+..++.++|||||||++|||++|+.||.... ..+...
T Consensus 183 FG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~G~~Pf~~~~-----~~~~~~ 249 (373)
T 2r5t_A 183 FGLCKENIEHN--------STTSTFCGTPEYLAPEVLHKQPYDRTVDWWCLGAVLYEMLYGLPPFYSRN-----TAEMYD 249 (373)
T ss_dssp CCBCGGGBCCC--------CCCCSBSCCCCCCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSB-----HHHHHH
T ss_pred CccccccccCC--------CccccccCCccccCHHHhCCCCCCchhhhHHHHHHHHHHHcCCCCCCCCC-----HHHHHH
Confidence 99998643221 22335679999999999999999999999999999999999999997432 112111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... ...+.. + ......+.+++.+|++.||.+||++.+.++
T Consensus 250 ~i~--------~~~~~~-~-----------~~~~~~~~~li~~lL~~dp~~R~~~~~~~~ 289 (373)
T 2r5t_A 250 NIL--------NKPLQL-K-----------PNITNSARHLLEGLLQKDRTKRLGAKDDFM 289 (373)
T ss_dssp HHH--------HSCCCC-C-----------SSSCHHHHHHHHHHTCSSGGGSTTTTTTHH
T ss_pred HHH--------hcccCC-C-----------CCCCHHHHHHHHHHcccCHHhCCCCCCCHH
Confidence 111 111100 0 012235779999999999999999864433
No 187
>3hko_A Calcium/calmodulin-dependent protein kinase with domain and 2 calmodulin-like EF...; structural genomics, protist parasite; HET: ANP; 1.80A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.9e-38 Score=351.09 Aligned_cols=267 Identities=20% Similarity=0.245 Sum_probs=201.8
Q ss_pred HHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc-----ccchHHHHHHHHHHHhcCCCCcceEEeeeecc
Q 047768 696 LSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ-----KGGSKSFAAECEALRSIRHRNLIKIVTICSSI 770 (1009)
Q Consensus 696 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~ 770 (1009)
+....++|.+.+.||+|+||+||+|.++.+++.||||+++... ....+.+.+|++++++++||||+++++++..
T Consensus 21 ~~~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~- 99 (345)
T 3hko_A 21 LLELQKKYHLKGAIGQGSYGVVRVAIENQTRAIRAIKIMNKNKIRQINPKDVERIKTEVRLMKKLHHPNIARLYEVYED- 99 (345)
T ss_dssp HHHHHHHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEHHHHHC---CHHHHHHHHHHHHHHCCCTTBCCEEEEEEC-
T ss_pred hhhhhhheeecceeeecCCeEEEEEEECCCCceEEEeehhhhhhcccCHHHHHHHHHHHHHHHhCCCCCcceeehhhcc-
Confidence 3445678999999999999999999999999999999996442 2334688999999999999999999999754
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCC----------------------------------CccCCCHHHHHHHHH
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQL----------------------------------GICNLSLIQRLNIVI 816 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~----------------------------------~~~~l~~~~~~~i~~ 816 (1009)
....++||||+++|+|.+++....... ....+++..++.++.
T Consensus 100 ----~~~~~lv~e~~~gg~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 175 (345)
T 3hko_A 100 ----EQYICLVMELCHGGHLLDKLNVFIDDSTGKCAMDVVKTQICPCPECNEEAINGSIHGFRESLDFVQREKLISNIMR 175 (345)
T ss_dssp ----SSEEEEEEECCCSCBHHHHEEEEEETTTTEEEEEEECCCCCCSHHHHHHHHHSCC--CEEECCHHHHHHHHHHHHH
T ss_pred ----CCeEEEEEeCCCCCcHHHHHHHhhcccccccccccccccccccccccccccccccccccccccccccHHHHHHHHH
Confidence 367899999999999999996321100 011245777889999
Q ss_pred HHHHHHHHHhhcCCCCceecCCCCCceeeCCCC--ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC
Q 047768 817 DVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM--VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG 894 (1009)
Q Consensus 817 ~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~--~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~ 894 (1009)
|++.||+|||++ +|+||||||+||+++.++ .+||+|||+++......... ........||+.|+|||++.+
T Consensus 176 qi~~~l~~LH~~---~ivH~Dlkp~NIll~~~~~~~~kl~Dfg~a~~~~~~~~~~----~~~~~~~~gt~~y~aPE~~~~ 248 (345)
T 3hko_A 176 QIFSALHYLHNQ---GICHRDIKPENFLFSTNKSFEIKLVDFGLSKEFYKLNNGE----YYGMTTKAGTPYFVAPEVLNT 248 (345)
T ss_dssp HHHHHHHHHHHT---TEECCCCCGGGEEESCSSSCCEEECCCTTCEEGGGTTCC------------CCCGGGCCHHHHTC
T ss_pred HHHHHHHHHHHC---CccccCCChhhEEEecCCCceEEEeeccccccccccCccc----cccccccCCCccccCchhhcc
Confidence 999999999999 999999999999998776 89999999998765422111 112234579999999999875
Q ss_pred --CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHH
Q 047768 895 --GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAV 972 (1009)
Q Consensus 895 --~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l 972 (1009)
..++.++|||||||++|||++|+.||...... ..... +.......... .......++
T Consensus 249 ~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~-----~~~~~--------~~~~~~~~~~~--------~~~~~~~~~ 307 (345)
T 3hko_A 249 TNESYGPKCDAWSAGVLLHLLLMGAVPFPGVNDA-----DTISQ--------VLNKKLCFENP--------NYNVLSPLA 307 (345)
T ss_dssp SSSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-----HHHHH--------HHHCCCCTTSG--------GGGGSCHHH
T ss_pred CCCCCCcHHHHHHHHHHHHHHHHCCCCCCCCChH-----HHHHH--------HHhcccccCCc--------ccccCCHHH
Confidence 67899999999999999999999999753221 11111 11111100000 001123467
Q ss_pred HHHHhhccCCCCCCCCCHHHHHH
Q 047768 973 IKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 973 ~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.+++.+|++.||.+|||+.|+++
T Consensus 308 ~~li~~~l~~~p~~Rps~~~~l~ 330 (345)
T 3hko_A 308 RDLLSNLLNRNVDERFDAMRALQ 330 (345)
T ss_dssp HHHHHHHSCSCTTTSCCHHHHHH
T ss_pred HHHHHHHcCCChhHCCCHHHHhc
Confidence 89999999999999999999986
No 188
>2jii_A Serine/threonine-protein kinase VRK3 molecule: VA related kinase 3; transferase, pseudo kinase domain, vaccinia related kinase, ATP-binding; 2.00A {Homo sapiens}
Probab=100.00 E-value=6.5e-38 Score=352.82 Aligned_cols=274 Identities=15% Similarity=0.135 Sum_probs=209.5
Q ss_pred hccCccCCcccccCCceEEEEEEec--------CCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcce---------
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHE--------NGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIK--------- 762 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~--------- 762 (1009)
.++|.+.+.||+|+||.||+|++.. .++.||||+++.. +.+.+|++++++++||||++
T Consensus 41 ~~~y~~~~~lg~G~~g~Vy~~~~~~t~~~~~~~~~~~vavK~~~~~-----~~~~~E~~~l~~l~h~niv~~~~~~~~~~ 115 (352)
T 2jii_A 41 GRQWKLKSFQTRDNQGILYEAAPTSTLTCDSGPQKQKFSLKLDAKD-----GRLFNEQNFFQRAAKPLQVNKWKKLYSTP 115 (352)
T ss_dssp SCEEEEEEEEEEETTEEEEEEEECC-----------CEEEEEEETT-----STHHHHHHHHHHHCCHHHHHHHHHHTTCT
T ss_pred CCeEEEEEEecCCCCeEEEEEeecCCccccccccCceEEEEEeccc-----chHHHHHHHHHHhcccchhhhhhhhccCC
Confidence 3689999999999999999999986 4789999998633 46889999999999999998
Q ss_pred ------EEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceec
Q 047768 763 ------IVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHG 836 (1009)
Q Consensus 763 ------l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHr 836 (1009)
+++++.. .....++||||+ +++|.+++..... ..+++.+++.++.|++.||+|||++ +|+||
T Consensus 116 ~~~i~~~~~~~~~----~~~~~~lv~e~~-~~~L~~~l~~~~~----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~ 183 (352)
T 2jii_A 116 LLAIPTCMGFGVH----QDKYRFLVLPSL-GRSLQSALDVSPK----HVLSERSVLQVACRLLDALEFLHEN---EYVHG 183 (352)
T ss_dssp TCSCCCCCEEEEE----TTTEEEEEEECC-CEEHHHHHHHSGG----GCCCHHHHHHHHHHHHHHHHHHHHT---TCBCS
T ss_pred ccCccchhhcccc----CCcEEEEEecCC-CcCHHHHHHhCCc----CCCCHHHHHHHHHHHHHHHHHHHhC---CccCC
Confidence 4455432 246789999999 9999999987521 2499999999999999999999999 99999
Q ss_pred CCCCCceeeCCCC--ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHH
Q 047768 837 DLKPSNVLLDHDM--VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIF 914 (1009)
Q Consensus 837 dlk~~Nill~~~~--~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ell 914 (1009)
||||+||+++.++ .+||+|||+++.......... ..........||+.|+|||++.+..++.++|||||||++|||+
T Consensus 184 Dikp~NIl~~~~~~~~~kl~Dfg~a~~~~~~~~~~~-~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el~ 262 (352)
T 2jii_A 184 NVTAENIFVDPEDQSQVTLAGYGFAFRYCPSGKHVA-YVEGSRSPHEGDLEFISMDLHKGCGPSRRSDLQSLGYCMLKWL 262 (352)
T ss_dssp CCCGGGEEEETTEEEEEEECCGGGCBCSSGGGCCCC-CCTTSSCTTCSCTTTCCHHHHTTCCCCHHHHHHHHHHHHHHHH
T ss_pred CCCHHHEEEcCCCCceEEEecCcceeeccCCCcccc-ccccccccccCCccccCHHHHccCCCCchhhHHHHHHHHHHHH
Confidence 9999999999998 999999999987654321110 0112223457999999999999999999999999999999999
Q ss_pred hCCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 047768 915 TRRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVV 994 (1009)
Q Consensus 915 tg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl 994 (1009)
+|+.||................ .......+.+.... ......++.+++.+|++.||++|||++|++
T Consensus 263 ~g~~pf~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~-------------~~~~~~~l~~li~~~l~~dp~~Rps~~~l~ 328 (352)
T 2jii_A 263 YGFLPWTNCLPNTEDIMKQKQK-FVDKPGPFVGPCGH-------------WIRPSETLQKYLKVVMALTYEEKPPYAMLR 328 (352)
T ss_dssp HSCCTTGGGTTCHHHHHHHHHH-HHHSCCCEECTTSC-------------EECCCHHHHHHHHHHHTCCTTCCCCHHHHH
T ss_pred hCCCCcccCCcCHHHHHHHHHh-ccCChhhhhhhccc-------------cCCCcHHHHHHHHHHHhCChhhCCCHHHHH
Confidence 9999998654222122221111 11111111111110 001234688999999999999999999999
Q ss_pred HHHHHHHHhhh
Q 047768 995 VKLCHARQNFL 1005 (1009)
Q Consensus 995 ~~L~~i~~~~~ 1005 (1009)
+.|+++.+...
T Consensus 329 ~~L~~~~~~~~ 339 (352)
T 2jii_A 329 NNLEALLQDLR 339 (352)
T ss_dssp HHHHHHHHHTT
T ss_pred HHHHHHHHhcC
Confidence 99999987754
No 189
>4agu_A Cyclin-dependent kinase-like 1; transferase, phospho-mimetic; HET: D15; 2.40A {Homo sapiens}
Probab=100.00 E-value=7.2e-38 Score=346.34 Aligned_cols=271 Identities=21% Similarity=0.297 Sum_probs=198.4
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
++|.+.+.||+|+||+||+|++..+|+.||||++...... ..+.+.+|++++++++||||+++++++... ...
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~-----~~~ 77 (311)
T 4agu_A 3 EKYEKIGKIGEGSYGVVFKCRNRDTGQIVAIKKFLESEDDPVIKKIALREIRMLKQLKHPNLVNLLEVFRRK-----RRL 77 (311)
T ss_dssp CCEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECCCCC-HHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TEE
T ss_pred ccceEeeEEeecCCeEEEEEEeCCCCcEEEEEEeeccccchHHHHHHHHHHHHHHhCCCCCccchhheeecC-----CeE
Confidence 5789999999999999999999989999999998544322 245688999999999999999999997643 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++++|.+++.... .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 78 ~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~i~~~l~~~l~~lH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg~ 148 (311)
T 4agu_A 78 HLVFEYCDHTVLHELDRYQR------GVPEHLVKSITWQTLQAVNFCHKH---NCIHRDVKPENILITKHSVIKLCDFGF 148 (311)
T ss_dssp EEEEECCSEEHHHHHHHTSS------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEEeCCCchHHHHHhhhc------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCCChhhEEEcCCCCEEEeeCCC
Confidence 99999999999999887654 389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++...... .......||+.|+|||++.+ ..++.++||||+|+++|||++|+.||......+ .........
T Consensus 149 ~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~-~~~~~~~~~ 219 (311)
T 4agu_A 149 ARLLTGPS--------DYYDDEVATRWYRSPELLVGDTQYGPPVDVWAIGCVFAELLSGVPLWPGKSDVD-QLYLIRKTL 219 (311)
T ss_dssp CEECC--------------------GGGCCHHHHHTCSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHH
T ss_pred chhccCcc--------cccCCCcCCccccChHHHhcCCCCCcchhhHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHHh
Confidence 98765321 12224568999999999876 678999999999999999999999997543221 111111100
Q ss_pred --ccchhh------hccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 --LPEKVM------EIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 --~~~~~~------~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
...... ........+.+..... ...........+.+++.+|++.||++|||++|+++
T Consensus 220 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 284 (311)
T 4agu_A 220 GDLIPRHQQVFSTNQYFSGVKIPDPEDMEP-LELKFPNISYPALGLLKGCLHMDPTERLTCEQLLH 284 (311)
T ss_dssp CSCCHHHHHHHHTCGGGTTCCCCCCSSCCC-HHHHCTTCCHHHHHHHHHHCCSSTTTSCCHHHHHT
T ss_pred cccccccccccccccccccCcCCCccccch-hhhhcccccHHHHHHHHHHccCChhhcCCHHHHhc
Confidence 000000 0000000000000000 00000123345789999999999999999999985
No 190
>3a62_A Ribosomal protein S6 kinase beta-1; kinase domain, inactive, active, ribosomal S6 kinase, activation, alternative initiation, ATP-binding; HET: TPO STU; 2.35A {Homo sapiens} PDB: 3a61_A* 3a60_A*
Probab=100.00 E-value=1e-37 Score=347.04 Aligned_cols=249 Identities=21% Similarity=0.270 Sum_probs=191.4
Q ss_pred hccCccCCcccccCCceEEEEEEe---cCCeEEEEEEeeccc----ccchHHHHHHHHHHHhcCCCCcceEEeeeecccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLH---ENGMLVAVKVINLEQ----KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDF 772 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 772 (1009)
.++|.+.+.||+|+||.||+|+.. .+++.||||+++... ......+.+|++++++++||||+++++++..
T Consensus 16 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~--- 92 (327)
T 3a62_A 16 PECFELLRVLGKGGYGKVFQVRKVTGANTGKIFAMKVLKKAMIVRNAKDTAHTKAERNILEEVKHPFIVDLIYAFQT--- 92 (327)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEECSSTTTTCEEEEEEECCC--------------HHHHHHHCCCTTBCCEEEEEEC---
T ss_pred HHHeEEEEEEEeCCCEEEEEEEEeccCCCCcEEEEEEEEHHHhhhhhhHHHHHHHHHHHHHhCCCCCccceeEEEEc---
Confidence 468999999999999999999985 578999999996432 2234567889999999999999999998754
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceE
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~k 852 (1009)
....++||||+++|+|.+++..... +++.++..++.|++.||.|||++ +|+||||||+||+++.++.+|
T Consensus 93 --~~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~qi~~al~~lH~~---~ivH~Dlkp~Nill~~~~~~k 161 (327)
T 3a62_A 93 --GGKLYLILEYLSGGELFMQLEREGI------FMEDTACFYLAEISMALGHLHQK---GIIYRDLKPENIMLNHQGHVK 161 (327)
T ss_dssp --SSCEEEEEECCTTEEHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCTTTEEECTTSCEE
T ss_pred --CCEEEEEEeCCCCCcHHHHHHhCCC------CCHHHHHHHHHHHHHHHHHHHhC---CEEcccCCHHHeEECCCCcEE
Confidence 3678999999999999999987543 88999999999999999999999 999999999999999999999
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHH
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~ 932 (1009)
|+|||+++...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ..
T Consensus 162 l~Dfg~~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~-----~~ 228 (327)
T 3a62_A 162 LTDFGLCKESIHDG--------TVTHTFCGTIEYMAPEILMRSGHNRAVDWWSLGALMYDMLTGAPPFTGENR-----KK 228 (327)
T ss_dssp ECCCSCC------------------CTTSSCCTTSCHHHHTTSCCCTHHHHHHHHHHHHHHHHSSCSCCCSSH-----HH
T ss_pred EEeCCcccccccCC--------ccccccCCCcCccCHhhCcCCCCCCcccchhHHHHHHHHHHCCCCCCCCCH-----HH
Confidence 99999997543221 122345799999999999999999999999999999999999999974321 11
Q ss_pred HHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-----EMTDVVV 995 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-----t~~evl~ 995 (1009)
...... ..... .+ .....++.+++.+|++.||++|| ++.|+++
T Consensus 229 ~~~~i~--------~~~~~-~p-----------~~~~~~~~~li~~~L~~dp~~R~~~~~~~~~e~l~ 276 (327)
T 3a62_A 229 TIDKIL--------KCKLN-LP-----------PYLTQEARDLLKKLLKRNAASRLGAGPGDAGEVQA 276 (327)
T ss_dssp HHHHHH--------HTCCC-CC-----------TTSCHHHHHHHHHHSCSCGGGSTTSSTTTHHHHHH
T ss_pred HHHHHH--------hCCCC-CC-----------CCCCHHHHHHHHHHHhcCHhhccCCCCCCHHHHHc
Confidence 111111 00000 00 01224577999999999999999 6667654
No 191
>1p4o_A Insulin-like growth factor I receptor protein; IGF-1R, kinase domain, hormone-growth factor complex; 1.50A {Homo sapiens} SCOP: d.144.1.7 PDB: 1m7n_A 3lvp_A* 3lw0_A* 1jqh_A* 2zm3_A* 3f5p_A* 3i81_A* 2oj9_A* 3nw5_A* 3nw6_A* 3nw7_A* 3o23_A* 3qqu_A* 3d94_A* 1k3a_A* 2z8c_A* 1ir3_A* 1gag_A* 1irk_A 3bu3_A* ...
Probab=100.00 E-value=2.6e-38 Score=351.80 Aligned_cols=274 Identities=21% Similarity=0.355 Sum_probs=212.6
Q ss_pred CHHHHHHHhccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEe
Q 047768 692 SYKELSKATNEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVT 765 (1009)
Q Consensus 692 ~~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~ 765 (1009)
..+++....++|.+.+.||+|+||.||+|.++ .+++.||||+++.... .....+.+|++++++++||||+++++
T Consensus 16 ~~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~ 95 (322)
T 1p4o_A 16 VPDEWEVAREKITMSRELGQGSFGMVYEGVAKGVVKDEPETRVAIKTVNEAASMRERIEFLNEASVMKEFNCHHVVRLLG 95 (322)
T ss_dssp CCCTTBCCGGGEEEEEEEEECSSSEEEEEEEEEEETTEEEEEEEEEECCTTSCHHHHHHHHHHHHHGGGCCCTTBCCEEE
T ss_pred ChhhhcchhhheeeeeEeccCCceEEEeeeecCccCCCCceEEEEEecccccCHHHHHHHHHHHHHHHhcCCCCEeeeEE
Confidence 33445556788999999999999999999986 3578899999864432 22356889999999999999999999
Q ss_pred eeeccccCCCceEEEEEeccCCCCHHHHHhccCCC----CCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCC
Q 047768 766 ICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQ----LGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPS 841 (1009)
Q Consensus 766 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~----~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~ 841 (1009)
++.. ....++||||+++|+|.+++...... .....+++..++.++.|++.||.|||++ +|+||||||+
T Consensus 96 ~~~~-----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dikp~ 167 (322)
T 1p4o_A 96 VVSQ-----GQPTLVIMELMTRGDLKSYLRSLRPAMANNPVLAPPSLSKMIQMAGEIADGMAYLNAN---KFVHRDLAAR 167 (322)
T ss_dssp EECS-----SSSCEEEEECCTTCBHHHHHHHHHHHHHHCTTCCCCCHHHHHHHHHHHHHHHHHHHHT---TCBCSCCSGG
T ss_pred EEcc-----CCccEEEEEeCCCCcHHHHHHHhchhhccCCCCCCcCHHHHHHHHHHHHHHHHHHHHC---CCccCCCccc
Confidence 9754 35679999999999999999764310 0112478999999999999999999999 9999999999
Q ss_pred ceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCC
Q 047768 842 NVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPT 920 (1009)
Q Consensus 842 Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~ 920 (1009)
||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++||||+|+++|||++ |+.||
T Consensus 168 NIli~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~el~~~g~~p~ 241 (322)
T 1p4o_A 168 NCMVAEDFTVKIGDFGMTRDIYETDY------YRKGGKGLLPVRWMSPESLKDGVFTTYSDVWSFGVVLWEIATLAEQPY 241 (322)
T ss_dssp GEEECTTCCEEECCTTCCCGGGGGGC------EEGGGSSEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHHTSCCTT
T ss_pred eEEEcCCCeEEECcCccccccccccc------cccccCCCCCCCccChhhhccCCCCchhhHHHHHHHHHHHHhcCCCcc
Confidence 99999999999999999986643211 111223457889999999999999999999999999999999 88998
Q ss_pred cccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHH
Q 047768 921 ESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHA 1000 (1009)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i 1000 (1009)
..... ........ ....... ...+...+.+++.+|++.||.+|||+.|+++.|+++
T Consensus 242 ~~~~~-----~~~~~~~~--------~~~~~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~e~l~~L~~~ 297 (322)
T 1p4o_A 242 QGLSN-----EQVLRFVM--------EGGLLDK-----------PDNCPDMLFELMRMCWQYNPKMRPSFLEIISSIKEE 297 (322)
T ss_dssp TTSCH-----HHHHHHHH--------TTCCCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHGGG
T ss_pred ccCCH-----HHHHHHHH--------cCCcCCC-----------CCCCCHHHHHHHHHHcCCCcccCcCHHHHHHHHHHh
Confidence 64321 11111111 1111111 112334678999999999999999999999999876
Q ss_pred HHh
Q 047768 1001 RQN 1003 (1009)
Q Consensus 1001 ~~~ 1003 (1009)
.+.
T Consensus 298 ~~~ 300 (322)
T 1p4o_A 298 MEP 300 (322)
T ss_dssp SCT
T ss_pred hcc
Confidence 543
No 192
>3oz6_A Mitogen-activated protein kinase 1, serine/threon protein kinase; structural genomics consortium, SGC, transferase; 2.37A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=8.8e-38 Score=356.63 Aligned_cols=211 Identities=24% Similarity=0.361 Sum_probs=166.0
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc--ccchHHHHHHHHHHHhcC-CCCcceEEeeeeccccCCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ--KGGSKSFAAECEALRSIR-HRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~~ 775 (1009)
..++|.+.+.||+|+||+||+|.++.+|+.||||++.... ....+.+.+|+.+++++. ||||+++++++... +.
T Consensus 7 ~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~i~~~~~~~~~~~~~~~E~~~l~~l~~h~niv~l~~~~~~~---~~ 83 (388)
T 3oz6_A 7 VLRKYELVKKLGKGAYGIVWKSIDRRTGEVVAVKKIFDAFQNSTDAQRTFREIMILTELSGHENIVNLLNVLRAD---ND 83 (388)
T ss_dssp HHTTEEEEEC-------CEEEEEETTTCCEEEEEEECC--CCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECT---TS
T ss_pred ccCceEEEEEeeeCCCeEEEEEEECCCCCEEEEEEecccccChHHHHHHHHHHHHHHhccCCCCCCeeeeEEecC---CC
Confidence 3578999999999999999999999999999999985332 223456788999999997 99999999997642 33
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||++ |+|.+++.... +++..+..++.|++.||+|||+. +|+||||||+|||++.++.+||+|
T Consensus 84 ~~~~lv~e~~~-~~L~~~~~~~~-------~~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~D 152 (388)
T 3oz6_A 84 RDVYLVFDYME-TDLHAVIRANI-------LEPVHKQYVVYQLIKVIKYLHSG---GLLHRDMKPSNILLNAECHVKVAD 152 (388)
T ss_dssp SCEEEEEECCS-EEHHHHHHHTC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECC
T ss_pred CEEEEEecccC-cCHHHHHHcCC-------CCHHHHHHHHHHHHHHHHHHHhC---CEEeCCCCHHHeEEcCCCCEEecC
Confidence 56899999997 69999997642 88999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCC-------------ccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCc
Q 047768 856 FGLAKFLSASPLGN-------------VVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTE 921 (1009)
Q Consensus 856 fGla~~~~~~~~~~-------------~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~ 921 (1009)
||+|+......... ............||+.|+|||++.+ ..++.++||||+||++|||++|+.||.
T Consensus 153 FG~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~ 232 (388)
T 3oz6_A 153 FGLSRSFVNIRRVTNNIPLSINENTENFDDDQPILTDYVATRWYRAPEILLGSTKYTKGIDMWSLGCILGEILCGKPIFP 232 (388)
T ss_dssp CTTCEESSSCCCCCCCGGGCCC---------------CCCGGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCC
T ss_pred CcccccccccccccccccccccccccccccccccccCCcccCCcCCHHHhcCCCCCCChhhHHHHHHHHHHHHhCCCCCC
Confidence 99998764321100 0001122344679999999999887 678999999999999999999999997
Q ss_pred cc
Q 047768 922 SM 923 (1009)
Q Consensus 922 ~~ 923 (1009)
..
T Consensus 233 ~~ 234 (388)
T 3oz6_A 233 GS 234 (388)
T ss_dssp CS
T ss_pred CC
Confidence 53
No 193
>3is5_A Calcium-dependent protein kinase; CDPK, structural genomics, parasitology, structural genomics consortium, SGC, ATP-binding, nucleotide-binding; HET: ANP; 2.55A {Toxoplasma gondii}
Probab=100.00 E-value=2.1e-37 Score=337.83 Aligned_cols=253 Identities=24% Similarity=0.310 Sum_probs=196.5
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
++|.+.+.||+|+||+||+|.++.++..||+|++..... ...+.+.+|++++++++||||+++++++.. ....+
T Consensus 22 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~-----~~~~~ 96 (285)
T 3is5_A 22 DLFIFKRKLGSGAFGDVHLVEERSSGLERVIKTINKDRSQVPMEQIEAEIEVLKSLDHPNIIKIFEVFED-----YHNMY 96 (285)
T ss_dssp HHEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEEGGGCCSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSEEE
T ss_pred hheeecceeccCCCeEEEEEEEccCCceEEEEEeeccccchhHHHHHHHHHHHHhCCCchHHhHHHheec-----CCeEE
Confidence 579999999999999999999998999999999976543 345789999999999999999999999754 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee---CCCCceEEecc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL---DHDMVAHVSDF 856 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill---~~~~~~kl~Df 856 (1009)
+||||+++|+|.+++...... ...+++..++.++.|++.||+|||+. +|+||||||+||++ +.++.+||+||
T Consensus 97 lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~L~~LH~~---~ivH~dikp~NIl~~~~~~~~~~kl~Df 171 (285)
T 3is5_A 97 IVMETCEGGELLERIVSAQAR--GKALSEGYVAELMKQMMNALAYFHSQ---HVVHKDLKPENILFQDTSPHSPIKIIDF 171 (285)
T ss_dssp EEECCCSCCBHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEESSSSTTCCEEECCC
T ss_pred EEEEeCCCCcHHHHHHhhhhc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CEEECCCCHHHEEEecCCCCCCEEEEee
Confidence 999999999999998653211 12489999999999999999999999 99999999999999 55688999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++..... .......||+.|+|||++. +.++.++||||+|+++|||++|+.||..... ......
T Consensus 172 g~a~~~~~~---------~~~~~~~~t~~y~aPE~~~-~~~~~~~Di~slG~il~~ll~g~~pf~~~~~-----~~~~~~ 236 (285)
T 3is5_A 172 GLAELFKSD---------EHSTNAAGTALYMAPEVFK-RDVTFKCDIWSAGVVMYFLLTGCLPFTGTSL-----EEVQQK 236 (285)
T ss_dssp CCCCC-------------------CTTGGGCCHHHHT-TCCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHHH
T ss_pred ecceecCCc---------ccCcCcccccCcCChHHhc-cCCCcccCeehHHHHHHHHHhCCCCCCCCCH-----HHHHhh
Confidence 999865432 1223456899999999875 5789999999999999999999999974321 111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... ......... .+...++.+++.+|++.||++|||+.|+++
T Consensus 237 ~~~------~~~~~~~~~-----------~~~~~~~~~li~~~L~~dP~~Rps~~e~l~ 278 (285)
T 3is5_A 237 ATY------KEPNYAVEC-----------RPLTPQAVDLLKQMLTKDPERRPSAAQVLH 278 (285)
T ss_dssp HHH------CCCCCCC-------------CCCCHHHHHHHHHHTCSCTTTSCCHHHHHT
T ss_pred hcc------CCccccccc-----------CcCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 000 000000000 012245779999999999999999999975
No 194
>3bhy_A Death-associated protein kinase 3; death associated kinase, DAPK3, ZIP kinase, ZIPK, DAP kinase like kinase, DLK, structural genomics consortium; HET: 7CP; 1.24A {Homo sapiens} PDB: 3bqr_A* 2j90_A* 1yrp_A* 2yak_A* 2y4p_A* 3f5u_A* 1jks_A 1jkk_A* 1ig1_A* 1jkl_A 1jkt_A 3eh9_A* 3eha_A* 3f5g_A* 1p4f_A* 1wvw_A 1wvx_A* 1wvy_A* 2w4j_A* 3dgk_A ...
Probab=100.00 E-value=3.5e-37 Score=335.83 Aligned_cols=259 Identities=22% Similarity=0.294 Sum_probs=204.6
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc------chHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG------GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
++|.+.+.||+|+||.||+|+++.+++.||||+++..... ..+.+.+|++++++++||||+++++++..
T Consensus 5 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~----- 79 (283)
T 3bhy_A 5 DHYEMGEELGSGQFAIVRKCRQKGTGKEYAAKFIKKRRLSSSRRGVSREEIEREVNILREIRHPNIITLHDIFEN----- 79 (283)
T ss_dssp HHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEBCSSTTCSSSBCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----
T ss_pred hhhhhHHhhcccCceEEEEEEEcCCCCeeehHHhhhccccccccchHHHHHHHHHHHHHhCCCCCeeehhheecC-----
Confidence 5789999999999999999999989999999999754321 35679999999999999999999999764
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC----c
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM----V 850 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~----~ 850 (1009)
....++||||+++++|.+++.... .+++.+++.++.|++.||.|||++ +|+||||||+||+++.++ .
T Consensus 80 ~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~~~ 150 (283)
T 3bhy_A 80 KTDVVLILELVSGGELFDFLAEKE------SLTEDEATQFLKQILDGVHYLHSK---RIAHFDLKPENIMLLDKNVPNPR 150 (283)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSSSSCC
T ss_pred CCeEEEEEeecCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCChHHEEEecCCCCCCc
Confidence 367899999999999999998654 389999999999999999999999 999999999999998877 8
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccH
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTL 930 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~ 930 (1009)
+||+|||+++...... ......||+.|+|||++.+..++.++||||||+++|||++|+.||.....
T Consensus 151 ~kl~dfg~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~----- 216 (283)
T 3bhy_A 151 IKLIDFGIAHKIEAGN---------EFKNIFGTPEFVAPEIVNYEPLGLEADMWSIGVITYILLSGASPFLGETK----- 216 (283)
T ss_dssp EEECCCTTCEECC-----------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----
T ss_pred eEEEecccceeccCCC---------cccccCCCcCccCcceecCCCCCcchhhhhHHHHHHHHHHCCCCCCCcch-----
Confidence 9999999998764321 12235689999999999999999999999999999999999999974321
Q ss_pred HHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH--HHHHHHHh
Q 047768 931 HEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV--KLCHARQN 1003 (1009)
Q Consensus 931 ~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~--~L~~i~~~ 1003 (1009)
...... +........... .......+.+++.+|++.||++|||+.|+++ .++.+++.
T Consensus 217 ~~~~~~--------~~~~~~~~~~~~--------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~h~~~~~~~~~ 275 (283)
T 3bhy_A 217 QETLTN--------ISAVNYDFDEEY--------FSNTSELAKDFIRRLLVKDPKRRMTIAQSLEHSWIKAIRRR 275 (283)
T ss_dssp HHHHHH--------HHTTCCCCCHHH--------HTTCCHHHHHHHHTTSCSSGGGSCCHHHHHHCHHHHHHHHC
T ss_pred HHHHHH--------hHhcccCCcchh--------cccCCHHHHHHHHHHccCCHhHCcCHHHHHhCHHHHHHHHH
Confidence 111111 000000000000 0112345789999999999999999999997 45555443
No 195
>1byg_A CSK, protein (C-terminal SRC kinase); protein kinase, phosphorylation, staurosporine, transferase; HET: STU; 2.40A {Homo sapiens} SCOP: d.144.1.7 PDB: 3d7u_A 3d7t_A*
Probab=100.00 E-value=6.1e-38 Score=340.87 Aligned_cols=255 Identities=31% Similarity=0.396 Sum_probs=199.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|++. |+.||||+++.. ...+.+.+|++++++++||||+++++++.. .....+
T Consensus 20 ~~~y~~~~~lg~G~~g~V~~~~~~--~~~vavK~~~~~--~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~----~~~~~~ 91 (278)
T 1byg_A 20 MKELKLLQTIGKGEFGDVMLGDYR--GNKVAVKCIKND--ATAQAFLAEASVMTQLRHSNLVQLLGVIVE----EKGGLY 91 (278)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEET--TEEEEEEECCCC--C--HHHHHTHHHHTTCCCTTBCCEEEEECC----C--CCE
T ss_pred hhhceEEeEEecCCCceEEEEEEc--CCEEEEEEecch--hHHHHHHHHHHHHHhCCCCCEeeEEEEEEc----CCCceE
Confidence 468999999999999999999874 899999998643 245789999999999999999999998643 234679
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++++|.+++..... ..+++..++.++.|++.|++|||++ +|+||||||+||+++.++.+||+|||++
T Consensus 92 lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~l~Dfg~~ 164 (278)
T 1byg_A 92 IVTEYMAKGSLVDYLRSRGR----SVLGGDCLLKFSLDVCEAMEYLEGN---NFVHRDLAARNVLVSEDNVAKVSDFGLT 164 (278)
T ss_dssp EEECCCTTEEHHHHHHHHHH----HHCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECTTSCEEECCCCC-
T ss_pred EEEecCCCCCHHHHHHhccc----ccCCHHHHHHHHHHHHHHHHHHHhC---CccccCCCcceEEEeCCCcEEEeecccc
Confidence 99999999999999986532 1378999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHhc
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
+..... .....+++.|+|||++.+..++.++||||||+++|||++ |+.||...... ......
T Consensus 165 ~~~~~~-----------~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t~g~~p~~~~~~~--~~~~~~---- 227 (278)
T 1byg_A 165 KEASST-----------QDTGKLPVKWTAPEALREKKFSTKSDVWSFGILLWEIYSFGRVPYPRIPLK--DVVPRV---- 227 (278)
T ss_dssp ----------------------CCTTTSCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSCTTSCGG--GHHHHH----
T ss_pred cccccc-----------ccCCCccccccCHHHhCCCCCCchhcHHHHHHHHHHHHhCCCCCCCCCCHH--HHHHHH----
Confidence 755432 112357889999999999999999999999999999998 99998753221 111111
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
...... .....+...+.+++.+||+.||++|||+.|+++.|++++...
T Consensus 228 --------~~~~~~----------~~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~L~~i~~~~ 275 (278)
T 1byg_A 228 --------EKGYKM----------DAPDGCPPAVYEVMKNCWHLDAAMRPSFLQLREQLEHIKTHE 275 (278)
T ss_dssp --------TTTCCC----------CCCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHC
T ss_pred --------hcCCCC----------CCcccCCHHHHHHHHHHhcCChhhCCCHHHHHHHHHHHHhhh
Confidence 000000 001123356889999999999999999999999999998754
No 196
>3nsz_A CK II alpha, casein kinase II subunit alpha; inhibitor, transferase-transferase inhibitor CO; HET: ANP; 1.30A {Homo sapiens} SCOP: d.144.1.7 PDB: 2r7i_A 3pe1_A* 1jwh_A* 3pe2_A* 3r0t_A* 3h30_A* 3q9w_A* 3q9x_A* 3q9y_A* 3q9z_A* 3qa0_A 3bqc_A* 2rkp_A* 3c13_A* 3fwq_A 3rps_A* 3u9c_A* 4fbx_A* 3mb7_A* 3mb6_A* ...
Probab=100.00 E-value=1.5e-37 Score=346.98 Aligned_cols=267 Identities=19% Similarity=0.242 Sum_probs=204.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-CCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|++.+.||+|+||+||+|++..+++.||||+++. ...+.+.+|++++++++ ||||+++++++... .....
T Consensus 35 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~---~~~~~~~~E~~~l~~l~~~~~i~~~~~~~~~~---~~~~~ 108 (330)
T 3nsz_A 35 QDDYQLVRKLGRGKYSEVFEAINITNNEKVVVKILKP---VKKKKIKREIKILENLRGGPNIITLADIVKDP---VSRTP 108 (330)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECS---CCHHHHHHHHHHHHHHTTSTTBCCEEEEEECT---TTCCE
T ss_pred CCceEEEEEecccCCeEEEEEEECCCCcEEEEEEecc---cchHHHHHHHHHHHHcCCCCCEEEeeeeeccC---CCCce
Confidence 3689999999999999999999998999999999863 23578999999999997 99999999997642 24668
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC-ceEEeccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM-VAHVSDFG 857 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~-~~kl~DfG 857 (1009)
++||||+++++|.++++. +++.++..++.|++.||+|||++ +|+||||||+||+++.++ .+||+|||
T Consensus 109 ~lv~e~~~~~~l~~~~~~---------~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dikp~Nil~~~~~~~~kl~Dfg 176 (330)
T 3nsz_A 109 ALVFEHVNNTDFKQLYQT---------LTDYDIRFYMYEILKALDYCHSM---GIMHRDVKPHNVMIDHEHRKLRLIDWG 176 (330)
T ss_dssp EEEEECCCCCCHHHHGGG---------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTTEEEECCCT
T ss_pred EEEEeccCchhHHHHHHh---------CCHHHHHHHHHHHHHHHHHHHhC---CeeeCCCCHHHEEEcCCCCEEEEEeCC
Confidence 999999999999999853 78899999999999999999999 999999999999999776 89999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
+++...... ......||..|+|||++.+ ..++.++||||+||++|||++|+.||................
T Consensus 177 ~a~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~DiwslG~il~~ll~g~~p~~~~~~~~~~l~~~~~~ 247 (330)
T 3nsz_A 177 LAEFYHPGQ---------EYNVRVASRYFKGPELLVDYQMYDYSLDMWSLGCMLASMIFRKEPFFHGHDNYDQLVRIAKV 247 (330)
T ss_dssp TCEECCTTC---------CCCSCCSCGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHTCSSSSCCSSHHHHHHHHHHH
T ss_pred CceEcCCCC---------ccccccccccccChhhhcCCCcCCchhhHHHHHHHHHHHHhCCCCcccCCchHHHHHHHHHh
Confidence 998765432 1223568999999999877 678999999999999999999999996433322222222222
Q ss_pred hccchhhhccCC---------------CCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPEKVMEIVDP---------------SLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~---------------~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
...+...+.++. ........ ............++.+++.+|++.||++|||++|+++
T Consensus 248 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpta~e~l~ 319 (330)
T 3nsz_A 248 LGTEDLYDYIDKYNIELDPRFNDILGRHSRKRWER--FVHSENQHLVSPEALDFLDKLLRYDHQSRLTAREAME 319 (330)
T ss_dssp HCHHHHHHHHHHTTCCCCTHHHHHHCCCCCCCGGG--GCCTTTGGGCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred cCCchhhhHHHHhccccccchhhhhhhccccchhh--hccccccccCCHHHHHHHHHHhcCCcccCCCHHHHhc
Confidence 111111111111 00000000 0000111123456889999999999999999999986
No 197
>3dbq_A Dual specificity protein kinase TTK; MPS1 structure, kinase activation, phosphorylation, ATP- binding, nucleotide-binding, phosphoprotein; 2.70A {Homo sapiens}
Probab=100.00 E-value=8.9e-38 Score=350.26 Aligned_cols=252 Identities=23% Similarity=0.360 Sum_probs=192.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCC--CCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRH--RNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||.||+|.+. +++.||||+++..... ..+.+.+|++++++++| |||+++++++...
T Consensus 8 ~~~y~i~~~lG~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~----- 81 (343)
T 3dbq_A 8 GRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD----- 81 (343)
T ss_dssp SCEEEEEEEESCCSSEEEEEEECT-TSCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-----
T ss_pred cCEEEEEEEEecCCCeEEEEEEeC-CCCEEEEEEeeccccchHHHHHHHHHHHHHHhhhhcCCceEEEeeeEeeC-----
Confidence 457999999999999999999885 6889999999754332 23678999999999976 9999999997643
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++|||+ .+|+|.+++.... .+++.++..++.|++.||.|||++ +|+||||||+|||++ ++.+||+|
T Consensus 82 ~~~~lv~e~-~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~al~~lH~~---~iiHrDikp~NIll~-~~~~kl~D 150 (343)
T 3dbq_A 82 QYIYMVMEC-GNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLID 150 (343)
T ss_dssp SEEEEEECC-CSEEHHHHHHHSC------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEE-TTEEEECC
T ss_pred CEEEEEEeC-CCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCcceEEEE-CCcEEEee
Confidence 678999994 5889999998754 389999999999999999999999 999999999999997 67899999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCC-----------CCCCCcccchHHHHHHHHHHhCCCCCcccc
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-----------GEASMRGGVYSYGILLLEIFTRRRPTESMF 924 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwS~Gvvl~elltg~~p~~~~~ 924 (1009)
||+++....... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....
T Consensus 151 FG~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~ 224 (343)
T 3dbq_A 151 FGIANQMQPDTT------SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQII 224 (343)
T ss_dssp CSSSCCC------------------CCCCSSCCHHHHHHCC-----------CCHHHHHHHHHHHHHHHHHSSCTTTTCC
T ss_pred cccccccCcccc------cccCCCCcCCcCcCCHHHHhhccccccccccccCCCchhhHHHHHHHHHHHHhCCCcchhhh
Confidence 999987654321 112234579999999999864 678999999999999999999999997432
Q ss_pred cCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 925 NEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.. .... ...++....... +.....++.+++.+||+.||.+|||+.|+++.
T Consensus 225 ~~---~~~~---------~~~~~~~~~~~~----------~~~~~~~l~~li~~~L~~dp~~Rpt~~e~l~h 274 (343)
T 3dbq_A 225 NQ---ISKL---------HAIIDPNHEIEF----------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 274 (343)
T ss_dssp SH---HHHH---------HHHHCTTSCCCC----------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred hH---HHHH---------HHHhcCCcccCC----------cccCCHHHHHHHHHHcCCChhHCCCHHHHHhC
Confidence 21 1111 111111111000 00112357799999999999999999999864
No 198
>3ll6_A Cyclin G-associated kinase; transferase, protein kinase, serine/threonine kinase, cyclin clathrine, membrane trafficking, structural genomics; 2.10A {Homo sapiens}
Probab=100.00 E-value=1.1e-37 Score=349.05 Aligned_cols=271 Identities=21% Similarity=0.239 Sum_probs=194.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-CCCcceEEeeeeccc---cCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRNLIKIVTICSSID---FKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~---~~~~ 775 (1009)
..+|.+.+.||+|+||.||+|++..+++.||||++........+.+.+|+.+++++. ||||+++++++.... ....
T Consensus 27 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~e~~~l~~l~~h~~iv~~~~~~~~~~~~~~~~~ 106 (337)
T 3ll6_A 27 ELRLRVRRVLAEGGFAFVYEAQDVGSGREYALKRLLSNEEEKNRAIIQEVCFMKKLSGHPNIVQFCSAASIGKEESDTGQ 106 (337)
T ss_dssp TEEEEEEEEEECCSSEEEEEEEETTTCCEEEEEEEEESSHHHHHHHHHHHHHHHHHTTSTTBCCEEEEEEECTTTSTTSS
T ss_pred CceEEEEEEEccCCceEEEEEEECCCCcEEEEEEecCCchHHHHHHHHHHHHHHHhccCCChhhccccccccccccccCC
Confidence 458999999999999999999999899999999986555445677899999999996 999999999985321 1344
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCC--ceecCCCCCceeeCCCCceEE
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPP--IVHGDLKPSNVLLDHDMVAHV 853 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~--ivHrdlk~~Nill~~~~~~kl 853 (1009)
...++||||+. |+|.+++...... ..+++.+++.++.|++.||+|||+. + |+||||||+||+++.++.+||
T Consensus 107 ~~~~lv~e~~~-g~L~~~l~~~~~~---~~~~~~~~~~i~~qi~~~l~~LH~~---~~~ivH~Dikp~NIl~~~~~~~kl 179 (337)
T 3ll6_A 107 AEFLLLTELCK-GQLVEFLKKMESR---GPLSCDTVLKIFYQTCRAVQHMHRQ---KPPIIHRDLKVENLLLSNQGTIKL 179 (337)
T ss_dssp EEEEEEEECCS-EEHHHHHHHHHTT---CSCCHHHHHHHHHHHHHHHHHHHTS---SSCCBCCCCCGGGCEECTTSCEEB
T ss_pred ceEEEEEEecC-CCHHHHHHHhhcc---CCCCHHHHHHHHHHHHHHHHHHHhC---CCCEEEccCCcccEEECCCCCEEE
Confidence 66899999995 7999998763221 2489999999999999999999998 7 999999999999999999999
Q ss_pred eccccccccCCCCCCCccc----cCCccccccccccccCcccc---CCCCCCCcccchHHHHHHHHHHhCCCCCcccccC
Q 047768 854 SDFGLAKFLSASPLGNVVE----TPSSSIGVKGTIGYVAPEYG---LGGEASMRGGVYSYGILLLEIFTRRRPTESMFNE 926 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~---~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~ 926 (1009)
+|||+++............ .........||+.|+|||++ .+..++.++|||||||++|||++|+.||......
T Consensus 180 ~Dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~t~~y~aPE~~~~~~~~~~~~~~Dv~slG~il~el~~g~~p~~~~~~~ 259 (337)
T 3ll6_A 180 CDFGSATTISHYPDYSWSAQRRALVEEEITRNTTPMYRTPEIIDLYSNFPIGEKQDIWALGCILYLLCFRQHPFEDGAKL 259 (337)
T ss_dssp CCCTTCBCCSSCC-------------------------------CCTTSCSSHHHHHHHHHHHHHHHHHSSCCC------
T ss_pred ecCccceeccccCcccccccccccchhhccccCCCCcCChhhhhccccCCCChHHhHHHHHHHHHHHHhCCCCCcchhHH
Confidence 9999998775432111000 00111245689999999998 5677899999999999999999999999642211
Q ss_pred CccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 927 GLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 927 ~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
.. ........+. ......+.+++.+||+.||++|||+.|+++.|+.+.+..
T Consensus 260 -----~~------------~~~~~~~~~~----------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~~l~~~~~~~ 310 (337)
T 3ll6_A 260 -----RI------------VNGKYSIPPH----------DTQYTVFHSLIRAMLQVNPEERLSIAEVVHQLQEIAAAR 310 (337)
T ss_dssp -----------------------CCCCTT----------CCSSGGGHHHHHHHSCSSGGGSCCHHHHHHHHHHHHHHT
T ss_pred -----Hh------------hcCcccCCcc----------cccchHHHHHHHHHccCChhhCcCHHHHHHHHHHHHhcc
Confidence 00 0100100000 011123678999999999999999999999999987654
No 199
>1fvr_A Tyrosine-protein kinase TIE-2; tyrosine kinase, transferase; 2.20A {Homo sapiens} SCOP: d.144.1.7 PDB: 2oo8_X* 2osc_A* 2p4i_A* 3l8p_A* 2wqb_A*
Probab=100.00 E-value=1.1e-37 Score=347.41 Aligned_cols=263 Identities=27% Similarity=0.409 Sum_probs=205.9
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEE--EEEEeeccc-ccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCc
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLV--AVKVINLEQ-KGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~v--avK~~~~~~-~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~ 776 (1009)
++|.+.+.||+|+||.||+|+++.++..+ |||+++... ....+.+.+|+++++++ +||||+++++++... .
T Consensus 25 ~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~v~iK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~~~~~-----~ 99 (327)
T 1fvr_A 25 NDIKFQDVIGEGNFGQVLKARIKKDGLRMDAAIKRMKEYASKDDHRDFAGELEVLCKLGHHPNIINLLGACEHR-----G 99 (327)
T ss_dssp GGCEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEECC------CHHHHHHHHHTTCCCCTTBCCEEEEEEET-----T
T ss_pred HHccceeeeecCCCceEEEEEEccCCcccceeeeeeccccchHHHHHHHHHHHHHHhccCCCchhhhceeeeeC-----C
Confidence 57889999999999999999999888865 999886432 23456789999999999 899999999997653 6
Q ss_pred eEEEEEeccCCCCHHHHHhccCCC----------CCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQ----------LGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD 846 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~----------~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~ 846 (1009)
..++||||+++|+|.+++...... .....+++.+++.++.|++.||+|||++ +|+||||||+||+++
T Consensus 100 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~ 176 (327)
T 1fvr_A 100 YLYLAIEYAPHGNLLDFLRKSRVLETDPAFAIANSTASTLSSQQLLHFAADVARGMDYLSQK---QFIHRDLAARNILVG 176 (327)
T ss_dssp EEEEEECCCTTCBHHHHHHTTCHHHHCHHHHHHTTBSCSSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred ceEEEEecCCCCCHHHHHHhcccccccccccccccccccCCHHHHHHHHHHHHHHHHHHHhC---CccCCCCccceEEEc
Confidence 789999999999999999865410 0112489999999999999999999999 999999999999999
Q ss_pred CCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCccccc
Q 047768 847 HDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFN 925 (1009)
Q Consensus 847 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~ 925 (1009)
.++.+||+|||+++..... .......+++.|+|||++.+..++.++|||||||++|||++ |+.||....
T Consensus 177 ~~~~~kL~Dfg~~~~~~~~---------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~pf~~~~- 246 (327)
T 1fvr_A 177 ENYVAKIADFGLSRGQEVY---------VKKTMGRLPVRWMAIESLNYSVYTTNSDVWSYGVLLWEIVSLGGTPYCGMT- 246 (327)
T ss_dssp GGGCEEECCTTCEESSCEE---------CCC----CCTTTCCHHHHHHCEECHHHHHHHHHHHHHHHHTTSCCTTTTCC-
T ss_pred CCCeEEEcccCcCcccccc---------ccccCCCCCccccChhhhccccCCchhcchHHHHHHHHHHcCCCCCCCCCc-
Confidence 9999999999999743321 11223456889999999998899999999999999999998 999996432
Q ss_pred CCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 926 EGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
........ ... ..... ...+..++.+++.+|++.||++|||++|+++.|+++.++.
T Consensus 247 ----~~~~~~~~-~~~-------~~~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~~L~~~~~~~ 302 (327)
T 1fvr_A 247 ----CAELYEKL-PQG-------YRLEK-----------PLNCDDEVYDLMRQCWREKPYERPSFAQILVSLNRMLEER 302 (327)
T ss_dssp ----HHHHHHHG-GGT-------CCCCC-----------CTTBCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHSS
T ss_pred ----HHHHHHHh-hcC-------CCCCC-----------CCCCCHHHHHHHHHHccCChhhCcCHHHHHHHHHHHHHhh
Confidence 11221111 110 00000 0122346789999999999999999999999999987754
No 200
>4ejn_A RAC-alpha serine/threonine-protein kinase; AKT1, autoinhibition, allosteric inhibitor, kinase inhibitor hydrophobic collapase, ATPase; HET: 0R4; 2.19A {Homo sapiens} PDB: 3o96_A*
Probab=100.00 E-value=4.2e-38 Score=365.80 Aligned_cols=249 Identities=23% Similarity=0.269 Sum_probs=194.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|+++.+|+.||||+++... ......+.+|+++++.++||||+++++++... .
T Consensus 147 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~l~~~~~~~-----~ 221 (446)
T 4ejn_A 147 MNEFEYLKLLGKGTFGKVILVKEKATGRYYAMKILKKEVIVAKDEVAHTLTENRVLQNSRHPFLTALKYSFQTH-----D 221 (446)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHC-------------CCCCCSCTTSCCEEEEEEET-----T
T ss_pred hHHcEEeEEEeeCcCEEEEEEEEcCCCCEEEEEEEEhhhhhhhHHHHHHHHHHHHHHhCCCCeEeeEEEEEeeC-----C
Confidence 467999999999999999999999999999999997542 22345678899999999999999999997653 6
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhh-cCCCCceecCCCCCceeeCCCCceEEec
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHH-HCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~-~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
..++||||+++|+|.+++..... +++..+..++.|++.||+|||+ . +||||||||+|||++.++.+||+|
T Consensus 222 ~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~~---giiHrDlkp~NIll~~~~~~kl~D 292 (446)
T 4ejn_A 222 RLCFVMEYANGGELFFHLSRERV------FSEDRARFYGAEIVSALDYLHSEK---NVVYRDLKLENLMLDKDGHIKITD 292 (446)
T ss_dssp EEEEEECCCSSCBHHHHHHHHSC------CCHHHHHHHHHHHHHHHHHHHHHT---CCCCCCCCGGGEEECSSSCEEECC
T ss_pred EEEEEEeeCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHhhcC---CEEECCCCHHHEEECCCCCEEEcc
Confidence 78999999999999999987553 8999999999999999999998 7 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+|+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||..... .....
T Consensus 293 FG~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~-----~~~~~ 359 (446)
T 4ejn_A 293 FGLCKEGIKDG--------ATMKTFCGTPEYLAPEVLEDNDYGRAVDWWGLGVVMYEMMCGRLPFYNQDH-----EKLFE 359 (446)
T ss_dssp CCCCCTTCC-------------CCSSSCGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHHH
T ss_pred CCCceeccCCC--------cccccccCCccccCHhhcCCCCCCCccchhhhHHHHHHHhhCCCCCCCCCH-----HHHHH
Confidence 99998543221 223346799999999999999999999999999999999999999964321 11111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-----EMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-----t~~evl~ 995 (1009)
...... . ..+ .....++.+++.+|++.||++|| +++|+++
T Consensus 360 ~i~~~~--------~-~~p-----------~~~~~~~~~li~~~L~~dP~~R~~~~~~t~~ell~ 404 (446)
T 4ejn_A 360 LILMEE--------I-RFP-----------RTLGPEAKSLLSGLLKKDPKQRLGGGSEDAKEIMQ 404 (446)
T ss_dssp HHHHCC--------C-CCC-----------TTSCHHHHHHHHHHTCSSTTTSTTCSTTTHHHHHT
T ss_pred HHHhCC--------C-CCC-----------ccCCHHHHHHHHHHcccCHHHhCCCCCCCHHHHHh
Confidence 111100 0 000 01224578999999999999999 9999875
No 201
>2acx_A G protein-coupled receptor kinase 6; GRK, G transferase; HET: ANP; 2.60A {Homo sapiens} PDB: 3nyn_A* 3nyo_A*
Probab=100.00 E-value=3e-37 Score=361.92 Aligned_cols=254 Identities=22% Similarity=0.329 Sum_probs=204.9
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|+++.+|+.||||+++... ......+.+|++++++++||||+++++++.. ..
T Consensus 183 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAvK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~-----~~ 257 (576)
T 2acx_A 183 KNTFRQYRVLGKGGFGEVCACQVRATGKMYACKKLEKKRIKKRKGEAMALNEKQILEKVNSRFVVSLAYAYET-----KD 257 (576)
T ss_dssp GGGEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred ccceEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEhHhhhhhHHHHHHHHHHHHHHHcCCCCEeeEEEEEee-----CC
Confidence 467999999999999999999999999999999996432 2345678899999999999999999998654 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++..... ..+++..++.++.|++.||+|||++ +||||||||+|||++.++.+||+||
T Consensus 258 ~l~lVmEy~~gg~L~~~l~~~~~----~~l~e~~~~~i~~qIl~aL~yLH~~---gIvHrDLKPeNILld~~g~vKL~DF 330 (576)
T 2acx_A 258 ALCLVLTLMNGGDLKFHIYHMGQ----AGFPEARAVFYAAEICCGLEDLHRE---RIVYRDLKPENILLDDHGHIRISDL 330 (576)
T ss_dssp EEEEEECCCCSCBHHHHHHSSSS----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEEcCCCCcHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHHC---CEeccCCchheEEEeCCCCeEEEec
Confidence 88999999999999999986542 2489999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ........
T Consensus 331 Gla~~~~~~---------~~~~~~~GT~~Y~APEvl~~~~~~~~~DiwSLGvilyeLltG~~PF~~~~~~~-~~~~i~~~ 400 (576)
T 2acx_A 331 GLAVHVPEG---------QTIKGRVGTVGYMAPEVVKNERYTFSPDWWALGCLLYEMIAGQSPFQQRKKKI-KREEVERL 400 (576)
T ss_dssp TTCEECCTT---------CCEECCCSCGGGCCHHHHTTCEESSHHHHHHHHHHHHHHHHSSCSSSCSSSCC-CHHHHHHH
T ss_pred ccceecccC---------ccccccCCCccccCHHHHcCCCCCccchHHHHHHHHHHHHhCCCCCcccccch-hHHHHHHH
Confidence 999876532 12234579999999999999999999999999999999999999997543221 11111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-----EMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-----t~~evl~ 995 (1009)
.. .. ...+ + .....++.+++.+|++.||++|| +++|+++
T Consensus 401 i~-----~~-~~~~---p-----------~~~s~~~~dLI~~lL~~dP~~R~g~~~~sa~eil~ 444 (576)
T 2acx_A 401 VK-----EV-PEEY---S-----------ERFSPQARSLCSQLLCKDPAERLGCRGGSAREVKE 444 (576)
T ss_dssp HH-----HC-CCCC---C-----------TTSCHHHHHHHHHHTCSSGGGSTTCSSSHHHHHHT
T ss_pred hh-----cc-cccC---C-----------ccCCHHHHHHHHHhccCCHHHcCCCCCCCHHHHHh
Confidence 10 00 0000 0 01224577999999999999999 6788764
No 202
>3mtl_A Cell division protein kinase 16; pctaire1, indirubin, structural genomics, structural consortium, SGC, transferase; HET: FEF; 2.40A {Homo sapiens}
Probab=100.00 E-value=4.8e-38 Score=349.43 Aligned_cols=271 Identities=21% Similarity=0.277 Sum_probs=194.9
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc-chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG-GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
++|.+.+.||+|+||+||+|+++.+++.||||+++..... ....+.+|++++++++||||+++++++.. ....+
T Consensus 2 ~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~~~~ 76 (324)
T 3mtl_A 2 ETYIKLDKLGEGTYATVYKGKSKLTDNLVALKEIRLEHEEGAPCTAIREVSLLKDLKHANIVTLHDIIHT-----EKSLT 76 (324)
T ss_dssp CSEEEEEEEEECSSEEEEEEEETTTCCEEEEEEECC------CCCCCCCHHHHSCCCCTTBCCEEEEEEC-----SSCEE
T ss_pred CceEEEEEEcCCCCEEEEEEEECCCCcEEEEEEEecccccccchhHHHHHHHHHhcCCCCCCeeeeEEee-----CCEEE
Confidence 5789999999999999999999989999999999644322 12345679999999999999999999754 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||++ |+|.+++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 77 lv~e~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~a 147 (324)
T 3mtl_A 77 LVFEYLD-KDLKQYLDDCGN-----IINMHNVKLFLFQLLRGLAYCHRQ---KVLHRDLKPQNLLINERGELKLADFGLA 147 (324)
T ss_dssp EEEECCS-EEHHHHHHHTTT-----CCCHHHHHHHHHHHHHHHHHHHHT---TEEESSCCGGGEEECTTCCEEECSSSEE
T ss_pred EEecccc-cCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCcCHHHEEECCCCCEEEccCccc
Confidence 9999997 699999987654 389999999999999999999999 9999999999999999999999999999
Q ss_pred cccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhc
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
+...... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||....... ....... ..
T Consensus 148 ~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf~~~~~~~-~~~~i~~-~~ 217 (324)
T 3mtl_A 148 RAKSIPT--------KTYDNEVVTLWYRPPDILLGSTDYSTQIDMWGVGCIFYEMATGRPLFPGSTVEE-QLHFIFR-IL 217 (324)
T ss_dssp ECC--------------------CGGGCCHHHHTTCCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHH-HH
T ss_pred ccccCCc--------cccccccCcccccChhhhcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH-Hh
Confidence 8654321 12234568999999999876 568999999999999999999999997533221 1111111 11
Q ss_pred cchhhhccCCCCCChhhhhh-------hccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 939 PEKVMEIVDPSLLPLEEERT-------NSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~-------~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.......+............ ............++.+++.+|++.||++|||++|+++
T Consensus 218 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 281 (324)
T 3mtl_A 218 GTPTEETWPGILSNEEFKTYNYPKYRAEALLSHAPRLDSDGADLLTKLLQFEGRNRISAEDAMK 281 (324)
T ss_dssp CCCCTTTSTTGGGCHHHHHTCCCCCCCCCHHHHCTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred CCCChHhchhhhcchhhcccccccccchhhhhhcCCCCHHHHHHHHHHcCcCcccCCCHHHHhc
Confidence 10000000000000000000 0000000122345789999999999999999999976
No 203
>2qr7_A Ribosomal protein S6 kinase alpha-3; kinase domain, RSK2, autoinhibitory, ATP-binding, nucleotide phosphorylation, serine/threonine-protein kinase; 2.00A {Mus musculus} PDB: 2qr8_A 4d9t_A* 4d9u_A* 3rny_A 2wnt_A
Probab=100.00 E-value=7.4e-38 Score=349.44 Aligned_cols=253 Identities=24% Similarity=0.309 Sum_probs=199.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||+||+|.++.+++.||||+++.... ...+|++++.++ +||||+++++++.. ....
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~avK~~~~~~~----~~~~E~~~l~~~~~hp~iv~~~~~~~~-----~~~~ 91 (342)
T 2qr7_A 21 TDGYEVKEDIGVGSYSVCKRCIHKATNMEFAVKIIDKSKR----DPTEEIEILLRYGQHPNIITLKDVYDD-----GKYV 91 (342)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTTC----CCHHHHHHHHHHTTSTTBCCEEEEEEC-----SSEE
T ss_pred cccEEEEEEEeeCCCEEEEEEEECCCCCEEEEEEEEcccC----ChHHHHHHHHHhcCCCCcCeEEEEEEc-----CCEE
Confidence 4579999999999999999999999999999999964432 345788888888 79999999999754 3788
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC----CceEEe
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD----MVAHVS 854 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~----~~~kl~ 854 (1009)
++||||+++|+|.+++.... .+++.++..++.|++.||+|||++ +|+||||||+||++..+ +.+||+
T Consensus 92 ~lv~E~~~gg~L~~~i~~~~------~~~~~~~~~~~~qi~~al~~lH~~---givHrDlkp~NIl~~~~~~~~~~~kl~ 162 (342)
T 2qr7_A 92 YVVTELMKGGELLDKILRQK------FFSEREASAVLFTITKTVEYLHAQ---GVVHRDLKPSNILYVDESGNPESIRIC 162 (342)
T ss_dssp EEEECCCCSCBHHHHHHTCT------TCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESSSSCSGGGEEEC
T ss_pred EEEEeCCCCCcHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeccCCHHHEEEecCCCCcCeEEEE
Confidence 99999999999999998754 389999999999999999999999 99999999999998443 359999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||..... ....+..
T Consensus 163 Dfg~a~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~ell~g~~Pf~~~~~--~~~~~~~ 232 (342)
T 2qr7_A 163 DFGFAKQLRAEN--------GLLMTPCYTANFVAPEVLERQGYDAACDIWSLGVLLYTMLTGYTPFANGPD--DTPEEIL 232 (342)
T ss_dssp CCTTCEECBCTT--------CCBCCSSCCSSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSSCSSTT--SCHHHHH
T ss_pred ECCCcccCcCCC--------CceeccCCCccccCHHHhcCCCCCCccCeeeHhHHHHHHhcCCCCCCCCCc--CCHHHHH
Confidence 999998765421 122345789999999999888899999999999999999999999974322 1222222
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
........ ....... .....++.+++.+|++.||++|||+.|+++.
T Consensus 233 ~~i~~~~~-~~~~~~~---------------~~~s~~~~~li~~~L~~dP~~R~t~~~il~h 278 (342)
T 2qr7_A 233 ARIGSGKF-SLSGGYW---------------NSVSDTAKDLVSKMLHVDPHQRLTAALVLRH 278 (342)
T ss_dssp HHHHHCCC-CCCSTTT---------------TTSCHHHHHHHHHHTCSSTTTSCCHHHHTTS
T ss_pred HHHccCCc-ccCcccc---------------ccCCHHHHHHHHHHCCCChhHCcCHHHHhcC
Confidence 21111100 0000000 0123457799999999999999999998763
No 204
>2jam_A Calcium/calmodulin-dependent protein kinase type 1G; transferase, kinase, membrane, ATP-binding, prenylation, serine/threonine-protein kinase, alternative splicing; HET: J60; 1.7A {Homo sapiens} PDB: 2jc6_A* 1a06_A
Probab=100.00 E-value=2.9e-37 Score=340.17 Aligned_cols=251 Identities=24% Similarity=0.309 Sum_probs=200.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|.+.+.||+|+||.||+|+++.+|+.||||+++.......+.+.+|++++++++||||+++++++.. ....+
T Consensus 8 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~~~ 82 (304)
T 2jam_A 8 RKTFIFMEVLGSGAFSEVFLVKQRLTGKLFALKCIKKSPAFRDSSLENEIAVLKKIKHENIVTLEDIYES-----TTHYY 82 (304)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECC------HHHHHHHHHHHCCCTTBCCEEEEEEC-----SSEEE
T ss_pred hccceeeeeccCCCCceEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHhCCCCCeeehhhhccc-----CCEEE
Confidence 4579999999999999999999998999999999976544445678999999999999999999998754 36789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee---CCCCceEEecc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL---DHDMVAHVSDF 856 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill---~~~~~~kl~Df 856 (1009)
+||||+++++|.+++.... .+++.++..++.|++.|+.|||+. +|+||||||+||++ +.++.+||+||
T Consensus 83 lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dikp~NIl~~~~~~~~~~kl~Df 153 (304)
T 2jam_A 83 LVMQLVSGGELFDRILERG------VYTEKDASLVIQQVLSAVKYLHEN---GIVHRDLKPENLLYLTPEENSKIMITDF 153 (304)
T ss_dssp EEECCCCSCBHHHHHHHHS------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCSCCGGGCEESSSSTTCCEEBCSC
T ss_pred EEEEcCCCccHHHHHHHcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCCHHHEEEecCCCCCCEEEccC
Confidence 9999999999999997754 389999999999999999999999 99999999999999 78899999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++..... ......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... ......
T Consensus 154 g~~~~~~~~----------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~ 218 (304)
T 2jam_A 154 GLSKMEQNG----------IMSTACGTPGYVAPEVLAQKPYSKAVDCWSIGVITYILLCGYPPFYEETE-----SKLFEK 218 (304)
T ss_dssp STTCCCCCB----------TTHHHHSCCCBCCTTTBSSCSCCHHHHHHHHHHHHHHHHHSSCTTTTSCH-----HHHHHH
T ss_pred CcceecCCC----------ccccccCCCCccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCCCCCH-----HHHHHH
Confidence 998754321 12235689999999999999999999999999999999999999964321 111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.. ........+. ......++.+++.+|++.||++|||+.|+++
T Consensus 219 i~-~~~~~~~~~~---------------~~~~~~~~~~li~~~l~~dp~~Rps~~~~l~ 261 (304)
T 2jam_A 219 IK-EGYYEFESPF---------------WDDISESAKDFICHLLEKDPNERYTCEKALS 261 (304)
T ss_dssp HH-HCCCCCCTTT---------------TTTSCHHHHHHHHHHHCSSTTTSCCHHHHHT
T ss_pred HH-cCCCCCCccc---------------cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 00 0000000000 0122345789999999999999999999986
No 205
>3mi9_A Cell division protein kinase 9; P-TEFB, HIV-1, protein binding; HET: TPO; 2.10A {Homo sapiens} PDB: 3mia_A* 4ec9_A* 4ec8_A* 3blh_A* 3blq_A* 3blr_A* 3lq5_A* 3my1_A* 3tn8_A* 3tnh_A* 3tni_A* 4bch_A* 4bci_A* 4bcj_A* 4bcf_A*
Probab=100.00 E-value=3.6e-37 Score=346.80 Aligned_cols=282 Identities=21% Similarity=0.314 Sum_probs=204.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeecccc---CC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDF---KG 774 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---~~ 774 (1009)
.++|.+.+.||+|+||+||+|+++.+|+.||||++..... .....+.+|++++++++||||+++++++..... ..
T Consensus 16 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 95 (351)
T 3mi9_A 16 VSKYEKLAKIGQGTFGEVFKARHRKTGQKVALKKVLMENEKEGFPITALREIKILQLLKHENVVNLIEICRTKASPYNRC 95 (351)
T ss_dssp GGGEEEEEECSSCSTTSEEEEEETTTCCEEEEEECCCSSCSSSSCHHHHHHHHHHHHCCCTTBCCEEEEEEEC-------
T ss_pred ccceeEEEEEecCCCcEEEEEEECCCCCEEEEEEEecccccccchHHHHHHHHHHHhccCCCcccHhheeeccccccccC
Confidence 4689999999999999999999998999999999864432 234678899999999999999999999875321 11
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
....++||||++ |+|.+.+..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 96 ~~~~~lv~e~~~-~~l~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~ivH~Dlkp~NIl~~~~~~~kl~ 166 (351)
T 3mi9_A 96 KGSIYLVFDFCE-HDLAGLLSNVLV-----KFTLSEIKRVMQMLLNGLYYIHRN---KILHRDMKAANVLITRDGVLKLA 166 (351)
T ss_dssp -CEEEEEEECCS-EEHHHHHHCTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEEC
T ss_pred CceEEEEEeccC-CCHHHHHhhccC-----CCCHHHHHHHHHHHHHHHHHHHHC---CeeCCCCCHHHEEEcCCCCEEEc
Confidence 356899999997 488888876543 389999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
|||+++........ .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... .....
T Consensus 167 Dfg~a~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i 241 (351)
T 3mi9_A 167 DFGLARAFSLAKNS----QPNRYTNRVVTLWYRPPELLLGERDYGPPIDLWGAGCIMAEMWTRSPIMQGNTEQH-QLALI 241 (351)
T ss_dssp CCTTCEECCCCSSS----SCCCCCSSCSCGGGCCHHHHTTCCSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHH
T ss_pred cchhcccccccccc----cccccCCcccccCccCchhhcCCCCCCcHhHHHHHHHHHHHHHhCCCCCCCCChHH-HHHHH
Confidence 99999876543211 1122334678999999998876 567999999999999999999999997532211 11111
Q ss_pred HHHh--ccchhhhc------cCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 934 AKRA--LPEKVMEI------VDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 934 ~~~~--~~~~~~~~------~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.... .+.....- .+..-......+..............+.+++.+|++.||++|||++|+++
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 311 (351)
T 3mi9_A 242 SQLCGSITPEVWPNVDNYELYEKLELVKGQKRKVKDRLKAYVRDPYALDLIDKLLVLDPAQRIDSDDALN 311 (351)
T ss_dssp HHHHCCCCTTTSTTGGGCGGGTSSCCCSSCCCCHHHHHHHHHCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HHHhCCCChhhccccccchhhcccccccccccCHHHHhhhccCChHHHHHHHHHhcCChhhCCCHHHHhC
Confidence 1110 11111000 00000000000000000000011245789999999999999999999986
No 206
>2xir_A Vascular endothelial growth factor receptor 2; angiogenesis, nucleotide-binding, inhibitor, phosphorylation receptor, transferase, transmembrane; HET: 00J; 1.50A {Homo sapiens} PDB: 1vr2_A* 1ywn_A* 3vnt_A* 3c7q_A* 2oh4_A* 3u6j_A* 3efl_A* 2p2i_A* 3cjf_A* 3cjg_A* 3ewh_A* 2qu5_A* 2qu6_A* 2rl5_A* 3b8q_A* 3b8r_A* 2p2h_A* 3cp9_A* 3cpb_A* 3cpc_A* ...
Probab=100.00 E-value=9.2e-38 Score=346.38 Aligned_cols=278 Identities=21% Similarity=0.308 Sum_probs=215.5
Q ss_pred HHHHHHHhccCccCCcccccCCceEEEEEEe-----cCCeEEEEEEeeccccc-chHHHHHHHHHHHhc-CCCCcceEEe
Q 047768 693 YKELSKATNEFSSSNTIGRGSFGFVYKGVLH-----ENGMLVAVKVINLEQKG-GSKSFAAECEALRSI-RHRNLIKIVT 765 (1009)
Q Consensus 693 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~-----~~~~~vavK~~~~~~~~-~~~~~~~E~~~l~~l-~h~niv~l~~ 765 (1009)
..++....++|.+.+.||+|+||+||+|++. .+++.||||+++..... ..+.+.+|+++++++ +||||+++++
T Consensus 19 ~~~~~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~ 98 (316)
T 2xir_A 19 ASKWEFPRDRLKLGKPLGRGAFGQVIEADAFGIDKTATCRTVAVKMLKEGATHSEHRALMSELKILIHIGHHLNVVNLLG 98 (316)
T ss_dssp HHHHBCCGGGEEEEEEEEECSSEEEEEEEEESSSSTTCEEEEEEEEECTTCCHHHHHHHHHHHHHHHHHCCCTTBCCEEE
T ss_pred ccceecchhheeeeeEEcCCCceeEEEEEEecCCccccceEEEEEecccCCCcHHHHHHHHHHHHHHhcccCCCeeeEEE
Confidence 3444555689999999999999999999864 46689999999654322 245788999999999 7999999999
Q ss_pred eeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCC----------ccCCCHHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 047768 766 ICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLG----------ICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVH 835 (1009)
Q Consensus 766 ~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~----------~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH 835 (1009)
++... ....++||||+++|+|.+++........ ...+++.+++.++.|++.||.|||++ +|+|
T Consensus 99 ~~~~~----~~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~qi~~al~~lH~~---~i~H 171 (316)
T 2xir_A 99 ACTKP----GGPLMVIVEFCKFGNLSTYLRSKRNEFVPYKVAPEDLYKDFLTLEHLICYSFQVAKGMEFLASR---KCIH 171 (316)
T ss_dssp EECCT----TSCCEEEEECCTTEEHHHHHHTCTTSEECC-------CTTCEEHHHHHHHHHHHHHHHHHHHHT---TCCC
T ss_pred EEecC----CCceEEEEEcCCCCcHHHHHHhcccccccccccchhhhccccCHHHHHHHHHHHHHHHHHHHhC---Cccc
Confidence 97542 3457999999999999999987653210 11278999999999999999999999 9999
Q ss_pred cCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh
Q 047768 836 GDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT 915 (1009)
Q Consensus 836 rdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt 915 (1009)
|||||+||+++.++.+||+|||+++....... ........||+.|+|||++.+..++.++||||||+++|||+|
T Consensus 172 ~dikp~Nil~~~~~~~kl~Dfg~~~~~~~~~~------~~~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~t 245 (316)
T 2xir_A 172 RDLAARNILLSEKNVVKICDFGLARDIYKDPD------YVRKGDARLPLKWMAPETIFDRVYTIQSDVWSFGVLLWEIFS 245 (316)
T ss_dssp SCCSGGGEEECGGGCEEECCCGGGSCTTTCTT------SEEETTEEECGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHT
T ss_pred ccCccceEEECCCCCEEECCCccccccccCcc------ceeccCCCcceeecCchhhccccccchhHHHHHHHHHHHHHh
Confidence 99999999999999999999999987654321 112234567899999999999999999999999999999998
Q ss_pred -CCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 047768 916 -RRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVV 994 (1009)
Q Consensus 916 -g~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl 994 (1009)
|+.||........ ........... ..+ ..+..++.+++.+||+.||.+|||+.|++
T Consensus 246 ~g~~p~~~~~~~~~-~~~~~~~~~~~-----------~~~-----------~~~~~~l~~li~~~l~~dp~~Rps~~ell 302 (316)
T 2xir_A 246 LGASPYPGVKIDEE-FCRRLKEGTRM-----------RAP-----------DYTTPEMYQTMLDCWHGEPSQRPTFSELV 302 (316)
T ss_dssp TSCCSSTTCCCSHH-HHHHHHHTCCC-----------CCC-----------TTCCHHHHHHHHHHTCSSGGGSCCHHHHH
T ss_pred CCCCCCcccchhHH-HHHHhccCccC-----------CCC-----------CCCCHHHHHHHHHHcCCChhhCcCHHHHH
Confidence 9999875432211 11111110000 000 01234578999999999999999999999
Q ss_pred HHHHHHHHhhhc
Q 047768 995 VKLCHARQNFLG 1006 (1009)
Q Consensus 995 ~~L~~i~~~~~~ 1006 (1009)
+.|+.+.+....
T Consensus 303 ~~L~~~~~~~~~ 314 (316)
T 2xir_A 303 EHLGNLLQANAQ 314 (316)
T ss_dssp HHHHHHHHHHC-
T ss_pred HHHHHHHhhhcc
Confidence 999999877644
No 207
>3n9x_A Phosphotransferase; malaria kinase, structural genomics, structural genomics CON SGC; 2.05A {Plasmodium berghei} PDB: 3nie_A*
Probab=100.00 E-value=3.5e-37 Score=356.12 Aligned_cols=212 Identities=24% Similarity=0.327 Sum_probs=172.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|+++.+++.||||+++.... ...+.+.+|++++++++||||+++++++..........
T Consensus 25 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vAiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~nIv~l~~~~~~~~~~~~~~ 104 (432)
T 3n9x_A 25 PDNYIIKHLIGRGSYGYVYLAYDKNTEKNVAIKKVNRMFEDLIDCKRILREITILNRLKSDYIIRLYDLIIPDDLLKFDE 104 (432)
T ss_dssp CTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSTTTSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCTTTCCC
T ss_pred cCCEEEEEEEeecCCEEEEEEEECCCCcEEEEEEeCchhcChHHHHHHHHHHHHHHHcCCCCcceEEEEEecCCCCcCCe
Confidence 4589999999999999999999999999999999964322 23467889999999999999999999987654444467
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||++ |+|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+|||++.++.+||+|||
T Consensus 105 ~~lv~e~~~-~~L~~~~~~~~------~l~~~~~~~i~~qil~aL~~LH~~---givHrDlkp~NILl~~~~~~kL~DFG 174 (432)
T 3n9x_A 105 LYIVLEIAD-SDLKKLFKTPI------FLTEEHIKTILYNLLLGENFIHES---GIIHRDLKPANCLLNQDCSVKVCDFG 174 (432)
T ss_dssp EEEEEECCS-EEHHHHHHSSC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCT
T ss_pred EEEEEecCC-cCHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CCCCCCCCHHHeEECCCCCEEEccCC
Confidence 899999996 69999998654 389999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCcc--------------ccCCccccccccccccCcccc-CCCCCCCcccchHHHHHHHHHHhCCCCCc
Q 047768 858 LAKFLSASPLGNVV--------------ETPSSSIGVKGTIGYVAPEYG-LGGEASMRGGVYSYGILLLEIFTRRRPTE 921 (1009)
Q Consensus 858 la~~~~~~~~~~~~--------------~~~~~~~~~~gt~~y~aPE~~-~~~~~~~~~DvwS~Gvvl~elltg~~p~~ 921 (1009)
+|+........... ..........||+.|+|||++ ....++.++||||+||++|||++|..||.
T Consensus 175 la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gt~~Y~APE~~~~~~~~~~~~DiwSlG~il~ell~g~~p~~ 253 (432)
T 3n9x_A 175 LARTINSEKDTNIVNDLEENEEPGPHNKNLKKQLTSHVVTRWYRAPELILLQENYTKSIDIWSTGCIFAELLNMLQSHI 253 (432)
T ss_dssp TCEEC-------------------------------CCCCCTTCCHHHHTTCSCCCTHHHHHHHHHHHHHHHTTCTTTC
T ss_pred CcccccccccccccccccccccccccccchhccccCCCCCccccCHHHHhcCCCCCcccccchHHHHHHHHHhcccccc
Confidence 99977543211000 000123457899999999985 55679999999999999999998665553
No 208
>3e7e_A HBUB1, BUB1A, mitotic checkpoint serine/threonine-protein kinas; spindle assembly checkpoint, mitosis, kinase, activation, KE CDC20, ATP-binding; HET: ATP; 2.31A {Homo sapiens}
Probab=100.00 E-value=3.8e-37 Score=348.43 Aligned_cols=262 Identities=14% Similarity=0.079 Sum_probs=205.1
Q ss_pred HhccCccCCcccccCCceEEEEE-----EecCCeEEEEEEeecccccchHHHHHHHHHHHhcC---CCCcceEEeeeecc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGV-----LHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR---HRNLIKIVTICSSI 770 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~-----~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~ 770 (1009)
..++|.+.+.||+|+||+||+|. ...+++.||||+++.. ....+.+|++++++++ |+||+++++++...
T Consensus 63 ~~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~---~~~~~~~e~~~~~~l~~~~~~~iv~~~~~~~~~ 139 (365)
T 3e7e_A 63 GSKLVYVHHLLGEGAFAQVYEATQGDLNDAKNKQKFVLKVQKPA---NPWEFYIGTQLMERLKPSMQHMFMKFYSAHLFQ 139 (365)
T ss_dssp SSSEEEEEEEEEECSSEEEEEEEC-------CCCCEEEEEESSC---CHHHHHHHHHHHHHSCGGGGGGBCCEEEEEECS
T ss_pred CCEEEEEEEEeeccCCEEEEEEEecCCcccccCcEEEEEEeCCC---ChhHHHHHHHHHHHhhhhhhhhhhhhheeeecC
Confidence 45689999999999999999994 5567899999998633 3567888999998886 99999999997643
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC---
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH--- 847 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~--- 847 (1009)
+..++||||+++|+|.+++...... ....+++.+++.++.|++.||+|||++ +||||||||+|||++.
T Consensus 140 -----~~~~lv~e~~~~g~L~~~l~~~~~~-~~~~l~~~~~~~i~~qi~~~L~~lH~~---~ivHrDiKp~NIll~~~~~ 210 (365)
T 3e7e_A 140 -----NGSVLVGELYSYGTLLNAINLYKNT-PEKVMPQGLVISFAMRMLYMIEQVHDC---EIIHGDIKPDNFILGNGFL 210 (365)
T ss_dssp -----SCEEEEECCCCSCBHHHHHHHHHTS-TTCSCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECGGGT
T ss_pred -----CCcEEEEeccCCCcHHHHHHHhhcc-cccCCCHHHHHHHHHHHHHHHHHHhhC---CeecCCCCHHHEEeccccc
Confidence 6779999999999999999753211 112499999999999999999999999 9999999999999998
Q ss_pred --------CCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCC
Q 047768 848 --------DMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRP 919 (1009)
Q Consensus 848 --------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p 919 (1009)
++.+||+|||+|+.+..... ........||+.|+|||++.+..++.++|||||||++|||+||+.|
T Consensus 211 ~~~~~~~~~~~~kl~DFG~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~p 284 (365)
T 3e7e_A 211 EQDDEDDLSAGLALIDLGQSIDMKLFPK------GTIFTAKCETSGFQCVEMLSNKPWNYQIDYFGVAATVYCMLFGTYM 284 (365)
T ss_dssp CC------CTTEEECCCTTCEEGGGSCT------TEEECCSSCTTSCCCHHHHTTCCBSTHHHHHHHHHHHHHHHHSSCC
T ss_pred CccccccccCCEEEeeCchhhhhhccCC------CceeeeecCCCCCCChHHhcCCCCCccccHHHHHHHHHHHHhCCCc
Confidence 89999999999986543211 1223446799999999999999999999999999999999999999
Q ss_pred CcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCC-CCHHHHHHHHH
Q 047768 920 TESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDR-MEMTDVVVKLC 998 (1009)
Q Consensus 920 ~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~R-pt~~evl~~L~ 998 (1009)
|....... ..+...+...+ ..+.+.+++..|++.+|.+| |+++++.+.|+
T Consensus 285 f~~~~~~~----------------~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~p~~r~~~~~~l~~~l~ 335 (365)
T 3e7e_A 285 KVKNEGGE----------------CKPEGLFRRLP-------------HLDMWNEFFHVMLNIPDCHHLPSLDLLRQKLK 335 (365)
T ss_dssp CEEEETTE----------------EEECSCCTTCS-------------SHHHHHHHHHHHHCCCCTTCCCCHHHHHHHHH
T ss_pred cccCCCCc----------------eeechhccccC-------------cHHHHHHHHHHHcCCCCCCcchHHHHHHHHHH
Confidence 86432210 00111111110 12245678889999999988 57888888888
Q ss_pred HHHHhhhcC
Q 047768 999 HARQNFLGQ 1007 (1009)
Q Consensus 999 ~i~~~~~~~ 1007 (1009)
++.+....+
T Consensus 336 ~~l~~~~~~ 344 (365)
T 3e7e_A 336 KVFQQHYTN 344 (365)
T ss_dssp HHHHHHTTT
T ss_pred HHHHHhhhh
Confidence 877664433
No 209
>2clq_A Mitogen-activated protein kinase kinase kinase 5; transferase, metal-binding, apoptosis; HET: STU; 2.3A {Homo sapiens}
Probab=100.00 E-value=5.3e-37 Score=336.65 Aligned_cols=253 Identities=24% Similarity=0.332 Sum_probs=197.8
Q ss_pred cCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEEEE
Q 047768 702 EFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKALV 781 (1009)
Q Consensus 702 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~lv 781 (1009)
+|.....||+|+||.||+|.+..+++.||||+++.......+.+.+|+.++++++||||+++++++... ...++|
T Consensus 23 ~~~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~-----~~~~lv 97 (295)
T 2clq_A 23 ENGDRVVLGKGTYGIVYAGRDLSNQVRIAIKEIPERDSRYSQPLHEEIALHKHLKHKNIVQYLGSFSEN-----GFIKIF 97 (295)
T ss_dssp TTSSBCEEEECSSSEEEEEEETTTCCEEEEEEEECCCC---HHHHHHHHHHHTCCCTTBCCEEEEEEET-----TEEEEE
T ss_pred CCCCcEEEeecCcEEEEEEEECCCCeEEEEEEccCCchHHHHHHHHHHHHHHhCCCCCEeeEeeEEEeC-----CcEEEE
Confidence 344456899999999999999989999999999766555567899999999999999999999997643 678999
Q ss_pred EeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC-CCceEEecccccc
Q 047768 782 YEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH-DMVAHVSDFGLAK 860 (1009)
Q Consensus 782 ~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~-~~~~kl~DfGla~ 860 (1009)
|||+++++|.+++...... ..+++..+..++.|++.||+|||++ +|+||||||+||+++. ++.+||+|||+++
T Consensus 98 ~e~~~~~~L~~~l~~~~~~---~~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~kl~Dfg~~~ 171 (295)
T 2clq_A 98 MEQVPGGSLSALLRSKWGP---LKDNEQTIGFYTKQILEGLKYLHDN---QIVHRDIKGDNVLINTYSGVLKISDFGTSK 171 (295)
T ss_dssp EECCSEEEHHHHHHHTTCC---CTTCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTTCCEEECCTTTCE
T ss_pred EEeCCCCCHHHHHHhhccC---CCccHHHHHHHHHHHHHHHHHHHhC---CEEccCCChhhEEEECCCCCEEEeeccccc
Confidence 9999999999999875321 2467889999999999999999999 9999999999999987 8999999999998
Q ss_pred ccCCCCCCCccccCCccccccccccccCccccCCCC--CCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhc
Q 047768 861 FLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGE--ASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 861 ~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
...... .......||+.|+|||++.+.. ++.++||||||+++|||++|+.||................
T Consensus 172 ~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~~~~~-- 241 (295)
T 2clq_A 172 RLAGIN--------PCTETFTGTLQYMAPEIIDKGPRGYGKAADIWSLGCTIIEMATGKPPFYELGEPQAAMFKVGMF-- 241 (295)
T ss_dssp ESCC-------------CCCCCCGGGCCHHHHHHGGGGCSHHHHHHHHHHHHHHHHHTSCTTGGGSSHHHHHHHHHHH--
T ss_pred ccCCCC--------CcccccCCCccccChhhhcCCCCCCCcHHHHHHHHHHHHHHHHCCCCccCCCchhHHHHhhccc--
Confidence 764321 1122456899999999987654 7899999999999999999999997432221111110000
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
-..+.+ ...+..++.+++.+|++.||++||++.|+++
T Consensus 242 ------~~~~~~--------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 278 (295)
T 2clq_A 242 ------KVHPEI--------------PESMSAEAKAFILKCFEPDPDKRACANDLLV 278 (295)
T ss_dssp ------CCCCCC--------------CTTSCHHHHHHHHHTTCSSTTTSCCHHHHHT
T ss_pred ------cccccc--------------cccCCHHHHHHHHHHccCChhhCCCHHHHhc
Confidence 000000 1122345789999999999999999999975
No 210
>2vgo_A Serine/threonine-protein kinase 12-A; nucleotide-binding, serine/threonine-protein kinase, ATP-binding, transferase, coiled coil, cell division, kinase; HET: TPO AD5; 1.7A {Xenopus laevis} PDB: 2bfx_A* 2vgp_A* 3ztx_A* 2vrx_A* 2bfy_A* 4af3_A* 3dj6_A* 3d15_A* 3d2i_A* 3d2k_A* 3d14_A* 3dj5_A* 3dj7_A* 3daj_A* 1ol5_A* 1ol7_A* 2x6d_A* 2x6e_A* 2xng_A* 2dwb_A* ...
Probab=100.00 E-value=4.3e-37 Score=335.26 Aligned_cols=247 Identities=22% Similarity=0.335 Sum_probs=203.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|++..+++.||||++.... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 13 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 87 (284)
T 2vgo_A 13 IDDFDIGRPLGKGKFGNVYLAREKQNKFIMALKVLFKSQLEKEGVEHQLRREIEIQSHLRHPNILRMYNYFHD-----RK 87 (284)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SS
T ss_pred hhhceeeheecCCCCeEEEEEEEcCCCcEEEEEEEcccccchHHHHHHHHHHHHHHhcCCCCCEeeEEEEEEc-----CC
Confidence 468999999999999999999999899999999996432 2334678999999999999999999999754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++..... +++.+++.++.|++.|+.|||++ +|+||||||+||+++.++.+||+||
T Consensus 88 ~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Df 158 (284)
T 2vgo_A 88 RIYLMLEFAPRGELYKELQKHGR------FDEQRSATFMEELADALHYCHER---KVIHRDIKPENLLMGYKGELKIADF 158 (284)
T ss_dssp EEEEEECCCTTEEHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHTT---TEECCCCSGGGEEECTTCCEEECCC
T ss_pred EEEEEEEeCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CceecCCCHHHEEEcCCCCEEEecc
Confidence 78999999999999999987643 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|++...... ......|++.|+|||++.+..++.++||||||+++|||++|+.||..... ......
T Consensus 159 g~~~~~~~~----------~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~ 223 (284)
T 2vgo_A 159 GWSVHAPSL----------RRRTMCGTLDYLPPEMIEGKTHDEKVDLWCAGVLCYEFLVGMPPFDSPSH-----TETHRR 223 (284)
T ss_dssp TTCEECSSS----------CBCCCCSCGGGCCHHHHTTCCBCTTHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHH
T ss_pred cccccCccc----------ccccccCCCCcCCHHHhccCCCCcccchhhHHHHHHHHHHCCCCCCCCCH-----hHHHHH
Confidence 999765432 12235689999999999999999999999999999999999999974321 111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
. ...... .+ .....++.+++.+|++.||.+|||+.|+++
T Consensus 224 ~--------~~~~~~-~~-----------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~ 262 (284)
T 2vgo_A 224 I--------VNVDLK-FP-----------PFLSDGSKDLISKLLRYHPPQRLPLKGVME 262 (284)
T ss_dssp H--------HTTCCC-CC-----------TTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred H--------hccccC-CC-----------CcCCHHHHHHHHHHhhcCHhhCCCHHHHhh
Confidence 1 110000 00 012245779999999999999999999986
No 211
>2zmd_A Dual specificity protein kinase TTK; MPS1, T686A, ATP-binding, nucleotide-bindi phosphoprotein, serine/threonine-protein kinase; HET: 537 7PE; 2.88A {Homo sapiens} PDB: 2zmc_A*
Probab=100.00 E-value=2.1e-37 Score=352.65 Aligned_cols=251 Identities=22% Similarity=0.353 Sum_probs=193.0
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcC--CCCcceEEeeeeccccCCCc
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIR--HRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~~~ 776 (1009)
++|.+.+.||+|+||+||+|.+. +++.||||++..... ...+.+.+|++++++++ ||||+++++++... .
T Consensus 56 ~~y~~~~~LG~G~fg~Vy~~~~~-~~~~vaiK~~~~~~~~~~~~~~~~~Ei~~l~~l~~~~~~iv~~~~~~~~~-----~ 129 (390)
T 2zmd_A 56 RIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD-----Q 129 (390)
T ss_dssp EEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-----S
T ss_pred CceEEEEEEccCCCeEEEEEEcC-CCCEEEEEEEecccccHHHHHHHHHHHHHHHHcccCCCeEEEEEEEEecC-----C
Confidence 46999999999999999999986 489999999975432 23467899999999996 59999999987643 6
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||| +.+++|.+++.... .+++.+++.++.|++.||.|||+. +|+||||||+|||++ ++.+||+||
T Consensus 130 ~~~lv~E-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~lH~~---~ivHrDlkp~NIll~-~~~~kl~DF 198 (390)
T 2zmd_A 130 YIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIV-DGMLKLIDF 198 (390)
T ss_dssp EEEEEEE-CCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHHTT---TCCCCCCCGGGEEES-SSCEEECCC
T ss_pred EEEEEEe-cCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCHHHEEEE-CCeEEEEec
Confidence 6899999 56889999998765 388999999999999999999999 999999999999995 589999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCC-----------CCCCCcccchHHHHHHHHHHhCCCCCccccc
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-----------GEASMRGGVYSYGILLLEIFTRRRPTESMFN 925 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~ 925 (1009)
|+++....... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||.....
T Consensus 199 G~a~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~DiwSlGvil~ell~G~~Pf~~~~~ 272 (390)
T 2zmd_A 199 GIANQMQPDTT------SVVKDSQVGAVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQIIN 272 (390)
T ss_dssp SSSCCC---------------CCSCCCGGGCCHHHHHCC------------CCHHHHHHHHHHHHHHHHHSSCTTTTCCC
T ss_pred CccccccCCCc------cccCCCCCcCCCccChHHhhhccccccccccccCCCChhhHHHHHHHHHHHHHCCCcchhhhH
Confidence 99987654211 112234579999999999865 4688999999999999999999999974322
Q ss_pred CCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 926 EGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
. ... +..+++........ . ....++.+++.+||+.||++|||+.|+++.
T Consensus 273 ~---~~~---------~~~~~~~~~~~~~~------~----~~~~~~~~li~~~L~~dP~~Rps~~ell~h 321 (390)
T 2zmd_A 273 Q---ISK---------LHAIIDPNHEIEFP------D----IPEKDLQDVLKCCLKRDPKQRISIPELLAH 321 (390)
T ss_dssp H---HHH---------HHHHHCTTSCCCCC------C----CSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred H---HHH---------HHHHhCccccCCCC------c----cchHHHHHHHHHHcccChhhCCCHHHHhhC
Confidence 1 111 11112111110000 0 012357799999999999999999999864
No 212
>2yfx_A Tyrosine-protein kinase receptor; nucleotide-binding, transferase; HET: VGH; 1.70A {Homo sapiens} PDB: 2xp2_A* 3aox_A* 2yhv_A 3lcs_A* 3lct_A* 4dce_A* 2xba_A* 2xb7_A*
Probab=100.00 E-value=1.2e-37 Score=346.94 Aligned_cols=267 Identities=22% Similarity=0.346 Sum_probs=203.3
Q ss_pred hccCccCCcccccCCceEEEEE-----EecCCeEEEEEEeeccc-ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGV-----LHENGMLVAVKVINLEQ-KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~-----~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 773 (1009)
.++|.+.+.||+|+||.||+|+ ...+++.||||++.... ......+.+|+.++++++||||+++++++...
T Consensus 29 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~--- 105 (327)
T 2yfx_A 29 RKNITLIRGLGHGAFGEVYEGQVSGMPNDPSPLQVAVKTLPEVCSEQDELDFLMEALIISKFNHQNIVRCIGVSLQS--- 105 (327)
T ss_dssp GGGCEEEEECC--CSSCEEEEEC--------CCEEEEEECCSSCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSS---
T ss_pred hhheEEEEEEcCCCCeeEEEEEEcCCCCCCccceEEEEEeccccchhhHHHHHHHHHHHhhCCCCCCCeEEEEEcCC---
Confidence 4689999999999999999999 44567899999996432 22345788999999999999999999997543
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCC-CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC---CC
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQL-GICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH---DM 849 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~-~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~---~~ 849 (1009)
...++||||+++|+|.+++....... ....+++.+++.++.|++.||.|||++ +|+||||||+||+++. +.
T Consensus 106 --~~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~al~~LH~~---~i~H~dlkp~NIli~~~~~~~ 180 (327)
T 2yfx_A 106 --LPRFILMELMAGGDLKSFLRETRPRPSQPSSLAMLDLLHVARDIACGCQYLEEN---HFIHRDIAARNCLLTCPGPGR 180 (327)
T ss_dssp --SSCEEEEECCTTEEHHHHHHHTSCCSSSTTSCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTC
T ss_pred --CCcEEEEecCCCCcHHHHHHhhcccccccccccHHHHHHHHHHHHHHHHHHhhC---CeecCcCCHhHEEEecCCCcc
Confidence 56799999999999999998764321 123489999999999999999999999 9999999999999984 45
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCc
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGL 928 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~ 928 (1009)
.+||+|||+++........ .......||+.|+|||++.+..++.++||||||+++|||+| |+.||.....
T Consensus 181 ~~kl~Dfg~~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~ellt~g~~p~~~~~~--- 251 (327)
T 2yfx_A 181 VAKIGDFGMARDIYRASYY------RKGGCAMLPVKWMPPEAFMEGIFTSKTDTWSFGVLLWEIFSLGYMPYPSKSN--- 251 (327)
T ss_dssp CEEECCCHHHHHHHC------------CCGGGSCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCSSTTCCH---
T ss_pred eEEECcccccccccccccc------ccCCCcCCCcceeCHhHhcCCCCCchhhHHHHHHHHHHHHcCCCCCCCCcCH---
Confidence 6999999999866433211 11223567899999999999999999999999999999999 9999864321
Q ss_pred cHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 929 TLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 929 ~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
.......... ..... ...+...+.+++.+||+.||.+||++.|+++.++.+.+..
T Consensus 252 --~~~~~~~~~~--------~~~~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~l~~~~~~~ 306 (327)
T 2yfx_A 252 --QEVLEFVTSG--------GRMDP-----------PKNCPGPVYRIMTQCWQHQPEDRPNFAIILERIEYCTQDP 306 (327)
T ss_dssp --HHHHHHHHTT--------CCCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHCH
T ss_pred --HHHHHHHhcC--------CCCCC-----------CCCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHhcCH
Confidence 1111111000 00000 0122346789999999999999999999999999887643
No 213
>2h8h_A Proto-oncogene tyrosine-protein kinase SRC; SRC kinase, transferase; HET: PTR H8H; 2.20A {Homo sapiens} SCOP: b.34.2.1 d.93.1.1 d.144.1.7
Probab=100.00 E-value=3.8e-38 Score=373.39 Aligned_cols=258 Identities=27% Similarity=0.447 Sum_probs=207.2
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
..++|.+.+.||+|+||+||+|.++ .+..||||+++... ...+.+.+|+++|++++||||+++++++.. ...
T Consensus 265 ~~~~~~~~~~lG~G~fg~Vy~~~~~-~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~hpniv~~~~~~~~------~~~ 336 (535)
T 2h8h_A 265 PRESLRLEVKLGQGCFGEVWMGTWN-GTTRVAIKTLKPGT-MSPEAFLQEAQVMKKLRHEKLVQLYAVVSE------EPI 336 (535)
T ss_dssp CGGGEEEEEEEEECSSEEEEEEEET-TTEEEEEEEECTTS-SCHHHHHHHHHHHHHCCCTTBCCEEEEECS------SSC
T ss_pred chhhhhhheecccCCCeEEEEEEEC-CCceEEEEEeCCCC-CCHHHHHHHHHHHHhCCCCCEeeEEEEEee------ccc
Confidence 3467888999999999999999996 46789999997543 345789999999999999999999999753 457
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++|+|.++++.... ..+++.+++.++.|++.||+|||++ +||||||||+|||++.++.+||+|||+
T Consensus 337 ~lv~e~~~~gsL~~~l~~~~~----~~l~~~~~~~i~~qi~~~L~~LH~~---~ivHrDlkp~NIll~~~~~~kl~DFG~ 409 (535)
T 2h8h_A 337 YIVTEYMSKGSLLDFLKGETG----KYLRLPQLVDMAAQIASGMAYVERM---NYVHRDLRAANILVGENLVCKVADFGL 409 (535)
T ss_dssp EEEECCCTTEEHHHHHSHHHH----TTCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEECGGGCEEECCTTS
T ss_pred eEeeehhcCCcHHHHHhhcCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeeCCCCCHhhEEEcCCCcEEEccccc
Confidence 899999999999999975421 1389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++...... ........++..|+|||++.+..++.++|||||||++|||++ |+.||..... .+.....
T Consensus 410 a~~~~~~~-------~~~~~~~~~~~~y~aPE~~~~~~~~~~sDvwSlGv~l~el~t~g~~P~~~~~~-----~~~~~~i 477 (535)
T 2h8h_A 410 ARLIEDNE-------YTARQGAKFPIKWTAPEAALYGRFTIKSDVWSFGILLTELTTKGRVPYPGMVN-----REVLDQV 477 (535)
T ss_dssp TTTCCCHH-------HHTTCSTTSCGGGSCHHHHHHCCCCHHHHHHHHHHHHHHHTTTTCCSSTTCCH-----HHHHHHH
T ss_pred ceecCCCc-------eecccCCcCcccccCHHHhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCCH-----HHHHHHH
Confidence 98654311 011223457889999999999999999999999999999999 9999975422 1111111
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHH
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQ 1002 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~ 1002 (1009)
....... ....+...+.+++.+||+.||++|||+.+|++.|+.+..
T Consensus 478 --------~~~~~~~-----------~~~~~~~~l~~li~~cl~~dP~~RPt~~~l~~~L~~~~~ 523 (535)
T 2h8h_A 478 --------ERGYRMP-----------CPPECPESLHDLMCQCWRKEPEERPTFEYLQAFLEDYFT 523 (535)
T ss_dssp --------HTTCCCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHTSSC
T ss_pred --------HcCCCCC-----------CCCCCCHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHhh
Confidence 0000000 011344568899999999999999999999999987654
No 214
>3a7i_A MST3 kinase, serine/threonine kinase 24 (STE20 homolog, yeast); two-LOBE protein kinase fold, ATP-binding, nucleotid binding, transferase; HET: TPO ADE; 1.45A {Homo sapiens} PDB: 3a7g_A* 3a7h_A* 3a7f_A* 3a7j_A* 3ckw_A 3ckx_A* 3ggf_A* 2xik_A*
Probab=100.00 E-value=8e-37 Score=336.56 Aligned_cols=251 Identities=23% Similarity=0.310 Sum_probs=205.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.+.|.+.+.||+|+||.||+|.+..+++.||||+++.... ...+.+.+|+.++++++||||+++++++... ...
T Consensus 21 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~ 95 (303)
T 3a7i_A 21 EELFTKLEKIGKGSFGEVFKGIDNRTQKVVAIKIIDLEEAEDEIEDIQQEITVLSQCDSPYVTKYYGSYLKD-----TKL 95 (303)
T ss_dssp GGTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEETTTCSTTHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TEE
T ss_pred HHHHHHhhhhcccCCeEEEEEEECCCCcEEEEEEecccccHHHHHHHHHHHHHHHhCCCCCEeEEEEEEecC-----CeE
Confidence 3578999999999999999999988999999999975542 3457899999999999999999999987653 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++++|.+++... .+++.++..++.|++.||.|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 96 ~lv~e~~~~~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~Dfg~ 165 (303)
T 3a7i_A 96 WIIMEYLGGGSALDLLEPG-------PLDETQIATILREILKGLDYLHSE---KKIHRDIKAANVLLSEHGEVKLADFGV 165 (303)
T ss_dssp EEEEECCTTEEHHHHHTTS-------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTSCEEECCCTT
T ss_pred EEEEEeCCCCcHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChheEEECCCCCEEEeeccc
Confidence 9999999999999999753 389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhc
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
+....... .......||+.|+|||++.+..++.++||||||+++|||++|+.||...... ......
T Consensus 166 ~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~~- 231 (303)
T 3a7i_A 166 AGQLTDTQ--------IKRNTFVGTPFWMAPEVIKQSAYDSKADIWSLGITAIELARGEPPHSELHPM-----KVLFLI- 231 (303)
T ss_dssp CEECBTTB--------CCBCCCCSCGGGCCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHHH-
T ss_pred ceecCccc--------cccCccCCCcCccCHHHHhcCCCCchhhhHHHHHHHHHHccCCCCCCCcCHH-----HHHHHh-
Confidence 98765431 1223456899999999999999999999999999999999999998743211 111100
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKL 997 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L 997 (1009)
.....+.+ ...+...+.+++.+|++.||++|||+.|+++..
T Consensus 232 ----~~~~~~~~--------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~~ 272 (303)
T 3a7i_A 232 ----PKNNPPTL--------------EGNYSKPLKEFVEACLNKEPSFRPTAKELLKHK 272 (303)
T ss_dssp ----HHSCCCCC--------------CSSCCHHHHHHHHHHCCSSGGGSCCHHHHTTCH
T ss_pred ----hcCCCCCC--------------ccccCHHHHHHHHHHcCCChhhCcCHHHHhhCh
Confidence 00000000 011234578999999999999999999998753
No 215
>1ua2_A CAK, cell division protein kinase 7; cell cycle, phosphorylation, protein-protein interaction, PR kinase, cell cycle, transferase; HET: TPO ATP; 3.02A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=3.5e-37 Score=345.86 Aligned_cols=276 Identities=22% Similarity=0.267 Sum_probs=197.7
Q ss_pred HHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc-----chHHHHHHHHHHHhcCCCCcceEEeeeecccc
Q 047768 698 KATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG-----GSKSFAAECEALRSIRHRNLIKIVTICSSIDF 772 (1009)
Q Consensus 698 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-----~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~ 772 (1009)
...++|.+.+.||+|+||.||+|++..+|+.||||+++..... ..+.+.+|++++++++||||+++++++..
T Consensus 7 ~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~--- 83 (346)
T 1ua2_A 7 SRAKRYEKLDFLGEGQFATVYKARDKNTNQIVAIKKIKLGHRSEAKDGINRTALREIKLLQELSHPNIIGLLDAFGH--- 83 (346)
T ss_dssp ------CEEEEEEEETTEEEEEEECSSCCSEEEEEEC------------CTHHHHHHHHHHHCCCTTBCCEEEEECC---
T ss_pred HHhcccEEEeEEeecCCEEEEEEEECCCCcEEEEEEEecCCcchhhhhhhHHHHHHHHHHhhCCCCCCCeEEEEEee---
Confidence 3457899999999999999999999988999999999643221 13578899999999999999999999754
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceE
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~k 852 (1009)
....++||||+++ +|.+++..... .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+|
T Consensus 84 --~~~~~lv~e~~~~-~l~~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~k 152 (346)
T 1ua2_A 84 --KSNISLVFDFMET-DLEVIIKDNSL-----VLTPSHIKAYMLMTLQGLEYLHQH---WILHRDLKPNNLLLDENGVLK 152 (346)
T ss_dssp --TTCCEEEEECCSE-EHHHHHTTCCS-----SCCSSHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred --CCceEEEEEcCCC-CHHHHHHhcCc-----CCCHHHHHHHHHHHHHHHHHHHHC---CEECCCCCHHHEEEcCCCCEE
Confidence 3678999999975 89999877543 388889999999999999999999 999999999999999999999
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCcccccCCccHH
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLH 931 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~ 931 (1009)
|+|||+++...... .......||+.|+|||++.+. .++.++|||||||++|||++|..||...... ..+.
T Consensus 153 l~Dfg~a~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~~~~~~~~~-~~~~ 223 (346)
T 1ua2_A 153 LADFGLAKSFGSPN--------RAYTHQVVTRWYRAPELLFGARMYGVGVDMWAVGCILAELLLRVPFLPGDSDL-DQLT 223 (346)
T ss_dssp ECCCGGGSTTTSCC--------CCCCCSCCCCTTCCHHHHTTCSCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHH
T ss_pred EEecccceeccCCc--------ccCCcccccccccCchHhhCCCCCCchhhhHhHHHHHHHHHHCCCCCCCCCHH-HHHH
Confidence 99999998764321 122345689999999998764 5799999999999999999999998653221 1112
Q ss_pred HHHHHhccchhhhccCCCCCChh---hhhhhc-cccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 932 EFAKRALPEKVMEIVDPSLLPLE---EERTNS-RRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 932 ~~~~~~~~~~~~~~~d~~l~~~~---~~r~~~-~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
...............+..-.... ...+.. ..........++.+++.+|++.||++|||+.|+++.
T Consensus 224 ~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~h 292 (346)
T 1ua2_A 224 RIFETLGTPTEEQWPDMCSLPDYVTFKSFPGIPLHHIFSAAGDDLLDLIQGLFLFNPCARITATQALKM 292 (346)
T ss_dssp HHHHHHCCCCTTTSSSTTSSTTCCCCCCCCCCCHHHHCTTCCHHHHHHHHHHHCSSTTTSCCHHHHHTS
T ss_pred HHHHHcCCCChhhhhhhccCcccccccccCCCChHHhhccCCHHHHHHHHHHhccChhhCCCHHHHhcC
Confidence 22211111100000000000000 000000 000001223568899999999999999999999863
No 216
>3qyz_A Mitogen-activated protein kinase 1; transferase, serine/threonine-protein kinase, ATP-binding CE phosphorylation; HET: CME Z8B SO4; 1.46A {Rattus norvegicus} PDB: 2fys_B 1erk_A* 3qyi_A* 3erk_A* 3qyw_A* 4erk_A* 4gsb_A* 4gt3_A* 4gva_A* 2z7l_A* 2erk_A* 1gol_A* 2gph_A 3zu7_A 3zuv_A* 3o71_A 3r63_A 3c9w_A* 2y9q_A* 4fmq_A* ...
Probab=100.00 E-value=4.7e-37 Score=347.42 Aligned_cols=275 Identities=20% Similarity=0.213 Sum_probs=206.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||.||+|.+..+++.||||++..... ...+.+.+|++++++++||||+++++++...........
T Consensus 26 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~~ 105 (364)
T 3qyz_A 26 GPRYTNLSYIGEGAYGMVCSAYDNLNKVRVAIKKISPFEHQTYCQRTLREIKILLRFRHENIIGINDIIRAPTIEQMKDV 105 (364)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCTTCHHHHHHHHHHHHHHHHCCCTTBCCCCEEECCSSTTTCCCE
T ss_pred cccEEEEEEeecCCCeEEEEEEECCCCeEEEEEEeccccCcHHHHHHHHHHHHHHhcCCCCCccceeEEecCCccccceE
Confidence 4589999999999999999999999999999999964332 223678899999999999999999999876544555678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||++ |+|.+++.... +++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 106 ~iv~e~~~-~~L~~~l~~~~-------~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIl~~~~~~~kl~Dfg~ 174 (364)
T 3qyz_A 106 YIVQDLME-TDLYKLLKTQH-------LSNDHICYFLYQILRGLKYIHSA---NVLHRDLKPSNLLLNTTCDLKICDFGL 174 (364)
T ss_dssp EEEEECCS-EEHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEcccC-cCHHHHHHhCC-------CCHHHHHHHHHHHHHHHHHHHHC---CeecCCCChHhEEECCCCCEEEEeCcc
Confidence 99999996 59999997643 89999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++....... .........||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ .........
T Consensus 175 a~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~~-~~~~i~~~~ 248 (364)
T 3qyz_A 175 ARVADPDHD-----HTGFLTEYVATRWYRAPEIMLNSKGYTKSIDIWSVGCILAEMLSNRPIFPGKHYLD-QLNHILGIL 248 (364)
T ss_dssp CEECCGGGC-----BCCTTCCCCSCGGGCCHHHHHTBCSCSTHHHHHHHHHHHHHHHHSSCSSCCSSGGG-HHHHHHHHH
T ss_pred eEecCCCCC-----ccccccccccccCCCCCHHhcCCCCCCcchhHHHHHHHHHHHHHCCCCCCCCChHH-HHHHHHHHh
Confidence 987654311 1112234579999999998654 558999999999999999999999997543221 122221111
Q ss_pred ccch---hhhcc--------CCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LPEK---VMEIV--------DPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~~~---~~~~~--------d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.... +.... ........ ............++.+++.+|++.||++|||+.|+++
T Consensus 249 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 313 (364)
T 3qyz_A 249 GSPSQEDLNCIINLKARNYLLSLPHKNK----VPWNRLFPNADSKALDLLDKMLTFNPHKRIEVEQALA 313 (364)
T ss_dssp CSCCHHHHHTCCCHHHHHHHHTSCCCCC----CCHHHHCTTSCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCCHHHHHHhhhhhHHHHHHhcCCccC----CCHHHhCCCCCHHHHHHHHHHcCCChhhCCCHHHHhc
Confidence 1100 10000 00000000 0000000112346789999999999999999999975
No 217
>2rku_A Serine/threonine-protein kinase PLK1; structure of PLK1, selectivity residues, POLO-like K structure based drug design, ATP-binding; HET: R78 TLA SRT TAR; 1.95A {Homo sapiens} PDB: 2v5q_A 2yac_A* 4a4l_A* 4a4o_A* 3kb7_A* 3d5w_A* 3d5u_A* 3d5v_A 3db8_A* 3dbc_A* 3dbd_A* 3d5x_A* 3db6_A* 3dbe_A* 3dbf_A*
Probab=100.00 E-value=2.9e-37 Score=338.49 Aligned_cols=250 Identities=20% Similarity=0.273 Sum_probs=204.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc---cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK---GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|.+..+++.||+|++..... ...+.+.+|++++++++||||+++++++.. ..
T Consensus 14 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~-----~~ 88 (294)
T 2rku_A 14 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED-----ND 88 (294)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SS
T ss_pred ccceEEEEEEeecCCEEEEEEEECCCCceEEEEEechhhccCHHHHHHHHHHHHHHHhCCCCCEeeeeeeecc-----CC
Confidence 4689999999999999999999998999999999965432 234578899999999999999999999754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.+++.... .+++.+++.++.|++.|++|||++ +|+||||||+||+++.++.+||+||
T Consensus 89 ~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~df 159 (294)
T 2rku_A 89 FVFVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDF 159 (294)
T ss_dssp EEEEEEECCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred EEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEcCCCCEEEEec
Confidence 7899999999999999987754 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++...... .......||+.|+|||++.+..++.++||||+|+++|||++|+.||..... .+....
T Consensus 160 g~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~~~ 226 (294)
T 2rku_A 160 GLATKVEYDG--------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYLR 226 (294)
T ss_dssp TTCEECCSTT--------CCBCCCCSCCSSCCHHHHTTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHH
T ss_pred cCceecccCc--------cccccccCCCCcCCcchhccCCCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHHHH
Confidence 9998764321 112235689999999999999999999999999999999999999974321 111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
. ..... ..+ ......+.+++.+|++.||++|||++|+++.
T Consensus 227 ~--------~~~~~-~~~-----------~~~~~~~~~li~~~l~~~p~~Rps~~~ll~~ 266 (294)
T 2rku_A 227 I--------KKNEY-SIP-----------KHINPVAASLIQKMLQTDPTARPTINELLND 266 (294)
T ss_dssp H--------HTTCC-CCC-----------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred H--------hhccC-CCc-----------cccCHHHHHHHHHHcccChhhCcCHHHHhhC
Confidence 1 00000 000 0122357799999999999999999999864
No 218
>2y7j_A Phosphorylase B kinase gamma catalytic chain, testis/liver isoform; transferase; HET: B49; 2.50A {Homo sapiens} PDB: 1h0t_A 1lp1_B 1q2n_A 2spz_A 3mzw_B* 1ss1_A 2jwd_A 1bdc_A 1bdd_A 1fc2_C* 2b87_A 2b88_A 1h0t_B 1lp1_A 2b87_B 2b89_A 3s1k_A
Probab=100.00 E-value=1.2e-36 Score=343.58 Aligned_cols=256 Identities=24% Similarity=0.345 Sum_probs=202.9
Q ss_pred HHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--------chHHHHHHHHHHHhc-CCCCcceEEee
Q 047768 696 LSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--------GSKSFAAECEALRSI-RHRNLIKIVTI 766 (1009)
Q Consensus 696 ~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l-~h~niv~l~~~ 766 (1009)
.....++|.+.+.||+|+||.||+|+++.+|+.||||+++..... ..+.+.+|+++++++ +||||++++++
T Consensus 89 ~~~~~~~y~~~~~lg~G~~g~Vy~a~~~~~g~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~hp~iv~~~~~ 168 (365)
T 2y7j_A 89 AKEFYQKYDPKDVIGRGVSSVVRRCVHRATGHEFAVKIMEVTAERLSPEQLEEVREATRRETHILRQVAGHPHIITLIDS 168 (365)
T ss_dssp HHHHHHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEETTSSCCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEE
T ss_pred hhhhhhhcccceEEecCCCEEEEEEEECCCCcEEEEEEEEccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeEEEEE
Confidence 344457899999999999999999999888999999999754321 134678899999999 79999999998
Q ss_pred eeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC
Q 047768 767 CSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD 846 (1009)
Q Consensus 767 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~ 846 (1009)
+.. ....++||||+++++|.+++.... .+++..+..++.|++.||.|||+. +|+||||||+||+++
T Consensus 169 ~~~-----~~~~~lv~e~~~g~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---gi~H~Dlkp~NIl~~ 234 (365)
T 2y7j_A 169 YES-----SSFMFLVFDLMRKGELFDYLTEKV------ALSEKETRSIMRSLLEAVSFLHAN---NIVHRDLKPENILLD 234 (365)
T ss_dssp EEB-----SSEEEEEECCCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC
T ss_pred Eee-----CCEEEEEEEeCCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEC
Confidence 754 367899999999999999998654 389999999999999999999999 999999999999999
Q ss_pred CCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC------CCCCCcccchHHHHHHHHHHhCCCCC
Q 047768 847 HDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG------GEASMRGGVYSYGILLLEIFTRRRPT 920 (1009)
Q Consensus 847 ~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~------~~~~~~~DvwS~Gvvl~elltg~~p~ 920 (1009)
.++.+||+|||++....... ......||+.|+|||++.+ ..++.++|||||||++|||++|+.||
T Consensus 235 ~~~~ikl~DfG~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~il~ell~g~~pf 305 (365)
T 2y7j_A 235 DNMQIRLSDFGFSCHLEPGE---------KLRELCGTPGYLAPEILKCSMDETHPGYGKEVDLWACGVILFTLLAGSPPF 305 (365)
T ss_dssp TTCCEEECCCTTCEECCTTC---------CBCCCCSCGGGCCHHHHHHTTCTTSCCBCTTHHHHHHHHHHHHHHHSSCSS
T ss_pred CCCCEEEEecCcccccCCCc---------ccccCCCCCCccChhhccccccccCcCCCchhhHHhHHHHHHHHHHCCCCC
Confidence 99999999999998765421 2234578999999998753 36889999999999999999999999
Q ss_pred cccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 921 ESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
..... ...... +........... .......+.+++.+|++.||++|||+.|+++
T Consensus 306 ~~~~~-----~~~~~~--------i~~~~~~~~~~~--------~~~~~~~~~~li~~~L~~dP~~Rps~~ell~ 359 (365)
T 2y7j_A 306 WHRRQ-----ILMLRM--------IMEGQYQFSSPE--------WDDRSSTVKDLISRLLQVDPEARLTAEQALQ 359 (365)
T ss_dssp CCSSH-----HHHHHH--------HHHTCCCCCHHH--------HSSSCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred CCCCH-----HHHHHH--------HHhCCCCCCCcc--------cccCCHHHHHHHHHHcCCChhHCcCHHHHhc
Confidence 64321 111110 000001000000 0012345789999999999999999999976
No 219
>2w5a_A Serine/threonine-protein kinase NEK2; Ser/Thr protein kinase, nucleus, meiosis, mitosis, cytoplasm, metal-binding, phosphoprotein; HET: ADP; 1.55A {Homo sapiens} PDB: 2wqo_A* 2xk3_A* 2xk4_A* 2xk6_A* 2xk7_A* 2xk8_A* 2xkc_A* 2xkd_A* 2xke_A* 2xkf_A* 2xnm_A* 2xnn_A* 2xno_A* 2xnp_A* 4afe_A* 2jav_A* 2w5b_A* 2w5h_A 4a4x_A*
Probab=100.00 E-value=1.5e-37 Score=338.11 Aligned_cols=258 Identities=21% Similarity=0.282 Sum_probs=203.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|++.+.||+|+||.||+|+++.+++.||+|+++.... ...+.+.+|++++++++||||+++++++... ....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~---~~~~ 81 (279)
T 2w5a_A 5 AEDYEVLYTIGTGSYGRCQKIRRKSDGKILVWKELDYGSMTEAEKQMLVSEVNLLRELKHPNIVRYYDRIIDR---TNTT 81 (279)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEECTTCCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEEG---GGTE
T ss_pred hhheeeehhccCCCCcEEEEEEECCCCcEEEEEEEEcccCCHHHHHHHHHHHHHHHhcCCCCCCeEEEEEecC---CCce
Confidence 4689999999999999999999998999999999975432 2346788999999999999999999987532 2367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCC-----ceecCCCCCceeeCCCCceE
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPP-----IVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~-----ivHrdlk~~Nill~~~~~~k 852 (1009)
.++||||+++++|.+++...... ...+++.+++.++.|++.||+|||+. + |+||||||+||+++.++.+|
T Consensus 82 ~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~~i~~~l~~lH~~---~~~~~~ivH~dl~p~NIl~~~~~~~k 156 (279)
T 2w5a_A 82 LYIVMEYCEGGDLASVITKGTKE--RQYLDEEFVLRVMTQLTLALKECHRR---SDGGHTVLHRDLKPANVFLDGKQNVK 156 (279)
T ss_dssp EEEEEECCTTEEHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHH---C------CCCCCSGGGEEECSSSCEE
T ss_pred EEEEEeCCCCCCHHHHHHhhccc--CCCCCHHHHHHHHHHHHHHHHHHhcc---cCCCCeeEEeccchhhEEEcCCCCEE
Confidence 89999999999999999764321 12489999999999999999999998 7 99999999999999999999
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHH
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~ 932 (1009)
|+|||+++...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||..... ..
T Consensus 157 l~dfg~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~-----~~ 223 (279)
T 2w5a_A 157 LGDFGLARILNHDT--------SFAKTFVGTPYYMSPEQMNRMSYNEKSDIWSLGCLLYELCALMPPFTAFSQ-----KE 223 (279)
T ss_dssp ECCCCHHHHC---C--------HHHHHHHSCCTTCCHHHHHCC-CCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HH
T ss_pred EecCchheeecccc--------ccccccCCCccccChHHhccCCCCchhhHHHHHHHHHHHHHCCCCCcccCH-----HH
Confidence 99999998764321 112235689999999999999999999999999999999999999975321 11
Q ss_pred HHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHH
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKL 997 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L 997 (1009)
........ .....+ ..+..++.+++.+||+.||++||++.|+++.+
T Consensus 224 ~~~~i~~~--------~~~~~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~~ll~~~ 269 (279)
T 2w5a_A 224 LAGKIREG--------KFRRIP-----------YRYSDELNEIITRMLNLKDYHRPSVEEILENP 269 (279)
T ss_dssp HHHHHHHT--------CCCCCC-----------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHTST
T ss_pred HHHHHhhc--------ccccCC-----------cccCHHHHHHHHHHcCCCcccCCCHHHHHhCh
Confidence 11111000 000000 12234678999999999999999999998754
No 220
>3byv_A Rhoptry kinase; malaria, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii} PDB: 2w1z_A
Probab=100.00 E-value=4.9e-38 Score=357.15 Aligned_cols=258 Identities=16% Similarity=0.145 Sum_probs=191.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecc---cccchHHHHHHHH---HHHhcCCCCcceEEe-------e
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLE---QKGGSKSFAAECE---ALRSIRHRNLIKIVT-------I 766 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~---~l~~l~h~niv~l~~-------~ 766 (1009)
.++|.+.+.||+|+||+||+|+++.+|+.||||+++.. .....+.+.+|++ .+++++||||+++++ +
T Consensus 72 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~hpniv~~~~~~~~~~~~ 151 (377)
T 3byv_A 72 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 151 (377)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEC-CCCCEEEEEEEEECC-CCTTHHHHHHHHHHGGGGSTTCCSHHHHHHHHCBCCCSEE
T ss_pred CceEEEcceeecCCCEEEEEEEECCCCcEEEEEEEeeccccchHHHHHHHHHHHHHHhccccCCHHHHHHHhhhhhhhhh
Confidence 46788899999999999999999888999999999743 2233477889994 555568999999984 3
Q ss_pred eecccc-------CCCc-----eEEEEEeccCCCCHHHHHhccCCCC-CccCCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 047768 767 CSSIDF-------KGVD-----FKALVYEYMQNGSLEEWLHQRDDQL-GICNLSLIQRLNIVIDVASAVEYLHHHCQPPI 833 (1009)
Q Consensus 767 ~~~~~~-------~~~~-----~~~lv~e~~~~gsL~~~l~~~~~~~-~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~i 833 (1009)
+..... .+.. ..++||||+ +|+|.+++....... ....+++..++.++.|++.||+|||++ +|
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~i~~~~lv~E~~-~g~L~~~l~~~~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 227 (377)
T 3byv_A 152 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 227 (377)
T ss_dssp EECTTSCSEEEC------CEEESEEEEEECC-SEEHHHHHHHHHHTTTTTHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred hhccCCccccccccCCCceEEEEEEEEEecc-CCCHHHHHHhccccccccccccHHHHHHHHHHHHHHHHHHHhC---Ce
Confidence 322100 0001 378999999 689999998643210 011244588889999999999999999 99
Q ss_pred eecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC-----------CCCCccc
Q 047768 834 VHGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-----------EASMRGG 902 (1009)
Q Consensus 834 vHrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-----------~~~~~~D 902 (1009)
+||||||+|||++.++.+||+|||+|+.... ......| +.|+|||++.+. .++.++|
T Consensus 228 vHrDikp~NIll~~~~~~kL~DFG~a~~~~~-----------~~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~~D 295 (377)
T 3byv_A 228 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGA-----------RVVSSVS-RGFEPPELEARRATISYHRDRRTLMTFSFD 295 (377)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTC-----------EEECCCC-TTCCCHHHHHHHTSTHHHHCCEEECCHHHH
T ss_pred ecCCCCHHHEEEcCCCCEEEEechhheecCC-----------cccCCCC-cCccChhhhcccccccccccccccCChhhh
Confidence 9999999999999999999999999985332 2234567 999999999887 8999999
Q ss_pred chHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCC
Q 047768 903 VYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIE 982 (1009)
Q Consensus 903 vwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~ 982 (1009)
||||||++|||++|+.||....... ....+... . ..+..++.+++.+||+.
T Consensus 296 vwSlG~il~elltg~~Pf~~~~~~~-------------~~~~~~~~-~---------------~~~~~~~~~li~~~L~~ 346 (377)
T 3byv_A 296 AWALGLVIYWIWCADLPITKDAALG-------------GSEWIFRS-C---------------KNIPQPVRALLEGFLRY 346 (377)
T ss_dssp HHHHHHHHHHHHHSSCCC------C-------------CSGGGGSS-C---------------CCCCHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHCCCCCccccccc-------------chhhhhhh-c---------------cCCCHHHHHHHHHHcCC
Confidence 9999999999999999996432110 01111110 0 01234578999999999
Q ss_pred CCCCCCCHHHHHH--HHHHHHH
Q 047768 983 SPFDRMEMTDVVV--KLCHARQ 1002 (1009)
Q Consensus 983 dp~~Rpt~~evl~--~L~~i~~ 1002 (1009)
||++|||+.|+++ .+.++.+
T Consensus 347 dp~~Rpt~~e~l~hp~f~~~~~ 368 (377)
T 3byv_A 347 PKEDRLLPLQAMETPEYEQLRT 368 (377)
T ss_dssp SGGGCCCHHHHHTSHHHHHHHH
T ss_pred CchhCCCHHHHhhChHHHHHHH
Confidence 9999999999986 4444444
No 221
>4aaa_A Cyclin-dependent kinase-like 2; transferase, phospho-mimetic; HET: DKI; 1.53A {Homo sapiens} PDB: 4bbm_A*
Probab=100.00 E-value=2.4e-37 Score=345.07 Aligned_cols=273 Identities=23% Similarity=0.327 Sum_probs=199.9
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||.||+|++..+++.||||++...... ..+.+.+|++++++++||||+++++++... ..
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~ 98 (331)
T 4aaa_A 24 MEKYENLGLVGEGSYGMVMKCRNKDTGRIVAIKKFLESDDDKMVKKIAMREIKLLKQLRHENLVNLLEVCKKK-----KR 98 (331)
T ss_dssp GGGEEEEEEGGGGTTSSEEEEEETTTCCEEEEEEEESCSSCHHHHHHHHHHHHHHHHCCCTTBCCEEEEEEET-----TE
T ss_pred hhhheeeeEEeecCCEEEEEEEECCCCceEEEEEEecCCCchHHHHHHHHHHHHHhhCCCCCEeeEEEEeecC-----CE
Confidence 46899999999999999999999989999999998644332 235678999999999999999999997653 67
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+++++|.++..... .+++..++.++.|++.||+|||+. +|+||||||+||+++.++.+||+|||
T Consensus 99 ~~lv~e~~~~~~l~~~~~~~~------~~~~~~~~~~~~qi~~~l~~LH~~---~ivH~dlkp~Nil~~~~~~~kl~Dfg 169 (331)
T 4aaa_A 99 WYLVFEFVDHTILDDLELFPN------GLDYQVVQKYLFQIINGIGFCHSH---NIIHRDIKPENILVSQSGVVKLCDFG 169 (331)
T ss_dssp EEEEEECCSEEHHHHHHHSTT------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECCCT
T ss_pred EEEEEecCCcchHHHHHhhcc------CCCHHHHHHHHHHHHHHHHHHHHC---CEEccCcChheEEEcCCCcEEEEeCC
Confidence 899999999999988876544 289999999999999999999999 99999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
+++...... .......||+.|+|||++.+. .++.++||||+||++|||++|+.||....... ........
T Consensus 170 ~~~~~~~~~--------~~~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~~ 240 (331)
T 4aaa_A 170 FARTLAAPG--------EVYDDEVATRWYRAPELLVGDVKYGKAVDVWAIGCLVTEMFMGEPLFPGDSDID-QLYHIMMC 240 (331)
T ss_dssp TC--------------------CCCCCTTCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHH
T ss_pred CceeecCCc--------cccCCCcCCccccCcccccCCCCcchHHHHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHHH
Confidence 998654321 122235689999999998875 78999999999999999999999997543221 11111110
Q ss_pred h--ccchhhh------ccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 937 A--LPEKVME------IVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 937 ~--~~~~~~~------~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
. ..+.... .......+....+.. .......+..++.+++.+|++.||++|||++|+++.
T Consensus 241 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~li~~~L~~dP~~Rpt~~ell~h 307 (331)
T 4aaa_A 241 LGNLIPRHQELFNKNPVFAGVRLPEIKEREP-LERRYPKLSEVVIDLAKKCLHIDPDKRPFCAELLHH 307 (331)
T ss_dssp HCSCCHHHHHHHHHCGGGTTCCCCCCSSCCC-HHHHSTTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred hCCCChhhhhHhhhccccccccCccccccch-hhhcccchhHHHHHHHHHHhccCcccCCCHHHHhcC
Confidence 0 0000000 000000000000000 000011234568899999999999999999999863
No 222
>1cm8_A Phosphorylated MAP kinase P38-gamma; phosphorylation, transferase; HET: TPO PTR ANP; 2.40A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=4.9e-37 Score=346.81 Aligned_cols=270 Identities=21% Similarity=0.258 Sum_probs=196.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccc-cCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSID-FKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|.+..+|+.||||++..... ...+.+.+|++++++++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~l~~~~~~~~~~~~~~ 103 (367)
T 1cm8_A 24 RAVYRDLQPVGSGAYGAVCSAVDGRTGAKVAIKKLYRPFQSELFAKRAYRELRLLKHMRHENVIGLLDVFTPDETLDDFT 103 (367)
T ss_dssp BSSEEEEEEC------CEEEEEETTTCCEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCBTTBCCCSEEECSCSSTTTCC
T ss_pred cceEEEeEEeeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCcCCCCceeeEecCCccccCc
Confidence 4578999999999999999999998999999999854322 22467889999999999999999999976532 12224
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+ +++|.++++... +++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 104 ~~~lv~e~~-~~~L~~~~~~~~-------l~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~~~kl~Df 172 (367)
T 1cm8_A 104 DFYLVMPFM-GTDLGKLMKHEK-------LGEDRIQFLVYQMLKGLRYIHAA---GIIHRDLKPGNLAVNEDCELKILDF 172 (367)
T ss_dssp CCEEEEECC-SEEHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEecC-CCCHHHHHhcCC-------CCHHHHHHHHHHHHHHHHHHHHC---CccccCcCHHHEEEcCCCCEEEEee
Confidence 569999999 889999997632 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ..+.....
T Consensus 173 g~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~ 240 (367)
T 1cm8_A 173 GLARQADSE-----------MTGYVVTRWYRAPEVILNWMRYTQTVDIWSVGCIMAEMITGKTLFKGSDHL-DQLKEIMK 240 (367)
T ss_dssp TTCEECCSS-----------CCSSCSCGGGCCTHHHHTTTCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHH
T ss_pred ecccccccc-----------cCcCcCCCCcCCHHHHhCCCCCChhhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHH
Confidence 999865421 224578999999999877 67899999999999999999999999743221 11111111
Q ss_pred Hhc--cchhhhccCCC--------CCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RAL--PEKVMEIVDPS--------LLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~--~~~~~~~~d~~--------l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... +.+....+... +...... ............+.+++.+|++.||++|||++|+++
T Consensus 241 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~ll~~mL~~dP~~R~t~~e~l~ 307 (367)
T 1cm8_A 241 VTGTPPAEFVQRLQSDEAKNYMKGLPELEKK---DFASILTNASPLAVNLLEKMLVLDAEQRVTAGEALA 307 (367)
T ss_dssp HHCCCCHHHHHTCSCHHHHHHHHHSCCCCCC---CGGGTCTTCCHHHHHHHHHHSCSSTTTSCCHHHHHH
T ss_pred hcCCCCHHHHHHhhhHHHHHHHHhCCCCCCC---CHHHHCCCCCHHHHHHHHHHccCChhHCCCHHHHhc
Confidence 110 11111000000 0000000 000001122346789999999999999999999986
No 223
>2xrw_A Mitogen-activated protein kinase 8; transcription, MAPK signaling pathways, linear binding motif; HET: ANP; 1.33A {Homo sapiens} PDB: 1ukh_A 1uki_A* 2xs0_A* 3elj_A* 2h96_A* 2gmx_A* 2g01_A* 2no3_A* 3o2m_A* 3o17_A* 3pze_A* 3g9l_X* 2p33_A* 3cgf_A* 3cgo_A* 3g90_X* 2ok1_A* 3g9n_A* 1pmn_A* 1pmq_A* ...
Probab=100.00 E-value=3.2e-37 Score=349.39 Aligned_cols=275 Identities=19% Similarity=0.210 Sum_probs=195.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccc-cCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSID-FKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|.+..+++.||||++..... ...+.+.+|+.+++.++||||+++++++.... .....
T Consensus 24 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~~~~~~~~~ 103 (371)
T 2xrw_A 24 LKRYQNLKPIGSGAQGIVCAAYDAILERNVAIKKLSRPFQNQTHAKRAYRELVLMKCVNHKNIIGLLNVFTPQKSLEEFQ 103 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECTTSSHHHHHHHHHHHHHHHHCCCTTBCCEEEEECSCCSTTTCC
T ss_pred hhheeEeeeeEecCCEEEEEEEECCCCceEEEEEeccccCChHHHHHHHHHHHHHHhcCCCCccceEEeecccccccccc
Confidence 3689999999999999999999998999999999965322 22457889999999999999999999976532 12334
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||++ |+|.+++.. .+++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 104 ~~~lv~e~~~-~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~NIl~~~~~~~kl~Df 171 (371)
T 2xrw_A 104 DVYIVMELMD-ANLCQVIQM--------ELDHERMSYLLYQMLCGIKHLHSA---GIIHRDLKPSNIVVKSDCTLKILDF 171 (371)
T ss_dssp EEEEEEECCS-EEHHHHHHS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCEEECCC
T ss_pred ceEEEEEcCC-CCHHHHHhh--------ccCHHHHHHHHHHHHHHHHHHHHC---CeecccCCHHHEEEcCCCCEEEEEe
Confidence 7899999996 588888853 288999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++..... .......||+.|+|||++.+..++.++||||+||++|||++|+.||....... ........
T Consensus 172 g~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~~ 241 (371)
T 2xrw_A 172 GLARTAGTS---------FMMTPYVVTRYYRAPEVILGMGYKENVDIWSVGCIMGEMIKGGVLFPGTDHID-QWNKVIEQ 241 (371)
T ss_dssp CC-------------------------CTTCCHHHHTTCCCCTTHHHHHHHHHHHHHHHSSCSSCCSSHHH-HHHHHHC-
T ss_pred ecccccccc---------cccCCceecCCccCHHHhcCCCCCchHhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHHH
Confidence 999865432 12234578999999999999999999999999999999999999997532210 01111100
Q ss_pred h----------ccchhhhccC--CCCCCh--hhhhh----hccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 937 A----------LPEKVMEIVD--PSLLPL--EEERT----NSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 937 ~----------~~~~~~~~~d--~~l~~~--~~~r~----~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
. ........+. +..... ....+ ............++.+++.+|++.||++|||++|+++.
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~mL~~dP~~R~t~~e~l~h 319 (371)
T 2xrw_A 242 LGTPCPEFMKKLQPTVRTYVENRPKYAGYSFEKLFPDVLFPADSEHNKLKASQARDLLSKMLVIDASKRISVDEALQH 319 (371)
T ss_dssp CCCCCHHHHTTSCHHHHHHHHSSCCCCCCCHHHHSCGGGSCCSSHHHHHHHHHHHHHHHHHSCSSGGGSCCHHHHHHS
T ss_pred hCCCCHHHHHHhhhHHHHHHhhCccccccchhhhcccccCcccccccccccHHHHHHHHHHCcCChhhCCCHHHHhCC
Confidence 0 0000000000 000000 00000 00000112235678999999999999999999999863
No 224
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=4.1e-37 Score=370.99 Aligned_cols=117 Identities=18% Similarity=0.230 Sum_probs=81.4
Q ss_pred CCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccccccccccccccc
Q 047768 506 PLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLS 585 (1009)
Q Consensus 506 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 585 (1009)
|..|+++++|+.|+|++|.+++ +|..+..+++|+.|+|++|+++ .+|..++.+++|++|+|++|.|++. | +..++
T Consensus 271 ~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~-~i~~~~~~l~~L~~L~L~~N~l~~~-~--~~~~~ 345 (597)
T 3oja_B 271 YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENLYLDHNSIVTL-K--LSTHH 345 (597)
T ss_dssp SGGGTTCSSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEEECCSSCCCCC-C--CCTTC
T ss_pred HHHhcCccCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCC-ccCcccccCCCCCEEECCCCCCCCc-C--hhhcC
Confidence 3344455566666666666663 4556666777777777777777 5667777788888888888888753 3 56778
Q ss_pred ccCceecccccCcccCCCCCcccCccccccccCCCcCCCCCCC
Q 047768 586 FLQYLNLSYNHFEGEVPTKGIFKNKTGFSIVGNGKLCGGLDEL 628 (1009)
Q Consensus 586 ~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~~ 628 (1009)
+|++|+|++|+++|.++. ..+..+....+.++...|+.+...
T Consensus 346 ~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~C~~~~~~ 387 (597)
T 3oja_B 346 TLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKIDYQL 387 (597)
T ss_dssp CCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCCCCCTTCEE
T ss_pred CCCEEEeeCCCCCChhHH-HHHHHHhhhccccccccCCcchhc
Confidence 888888888888877543 245555666677888899875543
No 225
>2owb_A Serine/threonine-protein kinase PLK1; catalytic domain, POLO-like kinase1, transfera; HET: 626; 2.10A {Homo sapiens} PDB: 2ou7_A* 3fc2_A* 3thb_A*
Probab=100.00 E-value=3.1e-37 Score=344.66 Aligned_cols=250 Identities=20% Similarity=0.270 Sum_probs=203.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc---cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK---GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|++..+++.||+|++..... ...+.+.+|++++++++||||+++++++.. ..
T Consensus 40 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~a~K~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~-----~~ 114 (335)
T 2owb_A 40 RRRYVRGRFLGKGGFAKCFEISDADTKEVFAGKIVPKSLLLKPHQREKMSMEISIHRSLAHQHVVGFHGFFED-----ND 114 (335)
T ss_dssp TEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGCCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SS
T ss_pred CCceEEEEEEeeCCCeEEEEEEECCCCCEEEEEEechhhhcCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-----CC
Confidence 4689999999999999999999998999999999965432 234678899999999999999999999764 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.+++.... .+++.+++.++.|++.||.|||++ +|+||||||+||+++.++.+||+||
T Consensus 115 ~~~lv~e~~~~~~L~~~~~~~~------~l~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Df 185 (335)
T 2owb_A 115 FVFVVLELCRRRSLLELHKRRK------ALTEPEARYYLRQIVLGCQYLHRN---RVIHRDLKLGNLFLNEDLEVKIGDF 185 (335)
T ss_dssp EEEEEECCCTTCBHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCC
T ss_pred eEEEEEecCCCCCHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CCEecCCCchhEEEcCCCCEEEeec
Confidence 7899999999999999988754 389999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||..... ......
T Consensus 186 g~~~~~~~~~--------~~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~-----~~~~~~ 252 (335)
T 2owb_A 186 GLATKVEYDG--------ERKKVLCGTPNYIAPEVLSKKGHSFEVDVWSIGCIMYTLLVGKPPFETSCL-----KETYLR 252 (335)
T ss_dssp TTCEECCSTT--------CCBCCCCSCCSSCCHHHHHTSCBCTHHHHHHHHHHHHHHHHSSCTTCCSSH-----HHHHHH
T ss_pred cCceecccCc--------ccccccCCCccccCHHHhccCCCCchhhHHHHHHHHHHHHHCcCCCCCCCH-----HHHHHH
Confidence 9998765321 112235689999999999999999999999999999999999999974321 111111
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.... ... .+ ..+...+.+++.+|++.||++|||++|+++.
T Consensus 253 ~~~~--------~~~-~~-----------~~~~~~~~~li~~~l~~dp~~Rps~~ell~~ 292 (335)
T 2owb_A 253 IKKN--------EYS-IP-----------KHINPVAASLIQKMLQTDPTARPTINELLND 292 (335)
T ss_dssp HHHT--------CCC-CC-----------TTSCHHHHHHHHHHTCSSGGGSCCGGGGGGS
T ss_pred HhcC--------CCC-CC-----------ccCCHHHHHHHHHHccCChhHCcCHHHHhcC
Confidence 0000 000 00 0122357789999999999999999999863
No 226
>2h6d_A 5'-AMP-activated protein kinase catalytic subunit alpha-2; ATP-binding, cholesterol biosynthesis, fatty acid biosynthesis;kinase, lipid synthesis; 1.85A {Homo sapiens} PDB: 3aqv_A* 2yza_A*
Probab=100.00 E-value=6.2e-37 Score=332.57 Aligned_cols=249 Identities=26% Similarity=0.385 Sum_probs=195.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|+++.+++.||||+++... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 10 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~ 84 (276)
T 2h6d_A 10 IGHYVLGDTLGVGTFGKVKIGEHQLTGHKVAVKILNRQKIRSLDVVGKIKREIQNLKLFRHPHIIKLYQVIST-----PT 84 (276)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SS
T ss_pred eccEEEEeeecCCCCeEEEEEEECCCCceEEEEEeccccccchhHHHHHHHHHHHHhcCCCCCEeEEEEEEec-----CC
Confidence 468999999999999999999998899999999996542 2335678999999999999999999999754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++++|.+++..... +++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~~l~df 155 (276)
T 2h6d_A 85 DFFMVMEYVSGGELFDYICKHGR------VEEMEARRLFQQILSAVDYCHRH---MVVHRDLKPENVLLDAHMNAKIADF 155 (276)
T ss_dssp EEEEEEECCCSCBHHHHHHHHCS------CCHHHHHHHHHHHHHHHHHHHHH---CSSCCCCCGGGEEECTTSCEEECCC
T ss_pred eEEEEEeccCCCcHHHHHhccCC------CCHHHHHHHHHHHHHHHHHHHHC---CCccCCCChhhEEECCCCCEEEeec
Confidence 78999999999999999987643 89999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|++....... ......||+.|+|||++.+..+ +.++||||+|+++|||++|+.||.... ......
T Consensus 156 g~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~~~-----~~~~~~ 221 (276)
T 2h6d_A 156 GLSNMMSDGE---------FLRTSCGSPNYAAPEVISGRLYAGPEVDIWSCGVILYALLCGTLPFDDEH-----VPTLFK 221 (276)
T ss_dssp CGGGCCCC----------------------CCTGGGTTSCCCHHHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHHH
T ss_pred ccccccCCCc---------ceecccCCccccCHHHHcCCCCCCccchHHHHHHHHHHHHhCCCCCCCCc-----HHHHHH
Confidence 9998664321 1223468999999999988765 689999999999999999999996432 111111
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
... .. ....+ ......+.+++.+|++.||++|||+.|+++.
T Consensus 222 ~~~-~~--------~~~~~-----------~~~~~~l~~li~~~l~~~p~~Rps~~~~l~h 262 (276)
T 2h6d_A 222 KIR-GG--------VFYIP-----------EYLNRSVATLLMHMLQVDPLKRATIKDIREH 262 (276)
T ss_dssp HHH-HC--------CCCCC-----------TTSCHHHHHHHHHHTCSSGGGSCCHHHHHHS
T ss_pred Hhh-cC--------cccCc-----------hhcCHHHHHHHHHHccCChhhCCCHHHHHhC
Confidence 100 00 00000 0122457899999999999999999999873
No 227
>3mwu_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, bumped kinase inhibitor, BKI; HET: BK3; 1.98A {Cryptosporidium parvum} PDB: 3igo_A* 3ncg_A*
Probab=100.00 E-value=1.1e-36 Score=358.14 Aligned_cols=251 Identities=26% Similarity=0.320 Sum_probs=200.9
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc--ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ--KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|+++.+++.||||+++... ......+.+|++++++++||||+++++++.. ...
T Consensus 21 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~ 95 (486)
T 3mwu_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-----SSS 95 (486)
T ss_dssp HHHEEEEEEEECCSSSEEEEEEETTTCCEEEEEEEEHHHHBCSCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SSE
T ss_pred hcceEEeEEEeecCCEEEEEEEECCCCCEEEEEEEecccccchHHHHHHHHHHHHHhCCCCCcCeEEEEEEc-----CCE
Confidence 357999999999999999999999899999999996432 2345788999999999999999999999764 367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC---CCCceEEe
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD---HDMVAHVS 854 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~---~~~~~kl~ 854 (1009)
.++||||+++|+|.+++..... +++.++..++.|++.||.|||++ +|+||||||+||+++ .++.+||+
T Consensus 96 ~~lv~e~~~~~~L~~~~~~~~~------~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~ 166 (486)
T 3mwu_A 96 FYIVGELYTGGELFDEIIKRKR------FSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKII 166 (486)
T ss_dssp EEEEECCCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEESSSSTTCCEEEC
T ss_pred EEEEEEcCCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeccCchHHEEEecCCCCCCEEEE
Confidence 8999999999999999977643 89999999999999999999999 999999999999995 56689999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++..... .......||+.|+|||++.+ .++.++||||+||++|||++|+.||..... ....
T Consensus 167 Dfg~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~ 231 (486)
T 3mwu_A 167 DFGLSTCFQQN---------TKMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE-----YDIL 231 (486)
T ss_dssp SCSCTTTBCCC-------------CCTTGGGGCCGGGGGS-CCCHHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH
T ss_pred ECCcCeECCCC---------CccCCCcCCCCCCCHHHhCC-CCCchhhHHHHHHHHHHHHhCCCCCCCCCH-----HHHH
Confidence 99999866432 12234579999999999875 589999999999999999999999974321 1111
Q ss_pred HHhccchhhhccCCCCC-ChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLL-PLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~-~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.... ..... ..+. ......++.+++.+|++.||.+|||+.|+++.
T Consensus 232 ~~i~--------~~~~~~~~~~---------~~~~s~~~~~li~~~L~~dp~~R~t~~~~l~h 277 (486)
T 3mwu_A 232 KRVE--------TGKYAFDLPQ---------WRTISDDAKDLIRKMLTFHPSLRITATQCLEH 277 (486)
T ss_dssp HHHH--------HTCCCSCSGG---------GGGSCHHHHHHHHHHTCSSTTTSCCHHHHHHC
T ss_pred HHHH--------hCCCCCCCcc---------cCCCCHHHHHHHHHHcCCChhhCcCHHHHhcC
Confidence 1110 00000 0000 01223457899999999999999999999873
No 228
>3c4z_A Rhodopsin kinase; Ser/Thr kinase, RGS homology domain, G protein coupled recep kinase, GRK, GRK1, P-loop, autophosphoryl ADP, ATP-binding; HET: ADP; 1.84A {Bos taurus} PDB: 3c4x_A* 3c4y_A 3c4w_A* 3c50_A* 3c51_A* 3qc9_A* 2i94_B
Probab=100.00 E-value=9e-37 Score=357.39 Aligned_cols=252 Identities=26% Similarity=0.368 Sum_probs=202.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|+++.+|+.||||+++... ......+.+|++++++++||||+++++++.. ..
T Consensus 184 ~~~f~~~~~LG~G~fG~Vy~a~~~~tg~~vAiK~l~k~~~~~~~~~~~~~~E~~iL~~l~hp~Iv~l~~~~~~-----~~ 258 (543)
T 3c4z_A 184 EDWFLDFRVLGRGGFGEVFACQMKATGKLYACKKLNKKRLKKRKGYQGAMVEKKILAKVHSRFIVSLAYAFET-----KT 258 (543)
T ss_dssp GGGEEEEEEEEECSSSEEEEEEETTTCCEEEEEEEEHHHHHHTTCHHHHHHHHHHHHHCCCTTBCCEEEEEEC-----SS
T ss_pred hhheEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEEhHHhhhhHHHHHHHHHHHHHHhcCCCCEeeEEEEEee-----CC
Confidence 367888999999999999999999899999999996442 2334678899999999999999999998654 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+++|+|.+++...... ...+++..++.++.|++.||.|||++ +|+||||||+||+++.++.+||+||
T Consensus 259 ~l~lVmE~~~gg~L~~~l~~~~~~--~~~l~e~~~~~~~~qi~~aL~~LH~~---gIvHrDLKP~NILl~~~g~vkL~DF 333 (543)
T 3c4z_A 259 DLCLVMTIMNGGDIRYHIYNVDED--NPGFQEPRAIFYTAQIVSGLEHLHQR---NIIYRDLKPENVLLDDDGNVRISDL 333 (543)
T ss_dssp EEEEEECCCTTCBHHHHHHTSSTT--SCSCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEEeccCCCHHHHHHHhhcc--cccccHHHHHHHHHHHHHHHHHHHHc---CCcccCCChHHEEEeCCCCEEEeec
Confidence 789999999999999999765421 12489999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
|+++...... .......||+.|+|||++.+..++.++||||+||++|||++|+.||...... .........
T Consensus 334 Gla~~~~~~~--------~~~~~~~GT~~Y~APE~l~~~~~~~~~DiwSlGvilyelltG~~PF~~~~~~-~~~~~~~~~ 404 (543)
T 3c4z_A 334 GLAVELKAGQ--------TKTKGYAGTPGFMAPELLLGEEYDFSVDYFALGVTLYEMIAARGPFRARGEK-VENKELKQR 404 (543)
T ss_dssp TTCEECCTTC--------CCBCCCCSCTTTSCHHHHTTCCBCTHHHHHHHHHHHHHHHHSSCSSCCTTCC-CCHHHHHHH
T ss_pred ceeeeccCCC--------cccccccCCccccChhhhcCCCCChHHhcCcchHHHHHHHhCCCCCCCCccc-hhHHHHHHH
Confidence 9998765431 1223457999999999999999999999999999999999999999754221 122222221
Q ss_pred hccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCH
Q 047768 937 ALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEM 990 (1009)
Q Consensus 937 ~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~ 990 (1009)
..... . ..+ ......+.+++.+|++.||++||++
T Consensus 405 i~~~~--------~-~~p-----------~~~s~~~~~li~~lL~~dP~~R~~~ 438 (543)
T 3c4z_A 405 VLEQA--------V-TYP-----------DKFSPASKDFCEALLQKDPEKRLGF 438 (543)
T ss_dssp HHHCC--------C-CCC-----------TTSCHHHHHHHHHHSCSSGGGSCCC
T ss_pred Hhhcc--------c-CCC-----------cccCHHHHHHHHHhccCCHhHCCCC
Confidence 11110 0 000 1123457799999999999999976
No 229
>3eqc_A Dual specificity mitogen-activated protein kinase; MEK1 kinase, ATP-binding, disease mutation, nucleoti binding, phosphoprotein; HET: 3BM AGS; 1.80A {Homo sapiens} PDB: 3eqd_A* 3eqf_A* 3eqg_A* 3eqh_A* 3eqi_A* 2y4i_C* 3eqb_A* 2p55_A* 1s9j_A* 3dy7_A* 3e8n_A* 3v01_A* 3v04_A* 3dv3_A* 3mbl_A* 3pp1_A* 3orn_A* 3os3_A* 3sls_A* 1s9i_A* ...
Probab=100.00 E-value=4.6e-37 Score=347.22 Aligned_cols=201 Identities=26% Similarity=0.378 Sum_probs=175.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||+||+|.+..+++.||+|+++.... ...+.+.+|++++++++||||+++++++... ...
T Consensus 32 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~va~K~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~-----~~~ 106 (360)
T 3eqc_A 32 DDDFEKISELGAGNGGVVFKVSHKPSGLVMARKLIHLEIKPAIRNQIIRELQVLHECNSPYIVGFYGAFYSD-----GEI 106 (360)
T ss_dssp GGGEEEEEEEEECSSCEEEEEEETTTCCEEEEEEEECCCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEET-----TEE
T ss_pred cccceeeeeecCCCCeEEEEEEECCCCcEEEEEEeccccCHHHHHHHHHHHHHHHHCCCCCEEEEeEEEEEC-----CEE
Confidence 3679999999999999999999998999999999975432 2346789999999999999999999997653 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++++|.+++..... +++..+..++.+++.|++|||+++ +|+||||||+||+++.++.+||+|||+
T Consensus 107 ~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~i~~~i~~~l~~lh~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg~ 178 (360)
T 3eqc_A 107 SICMEHMDGGSLDQVLKKAGR------IPEQILGKVSIAVIKGLTYLREKH--KIMHRDVKPSNILVNSRGEIKLCDFGV 178 (360)
T ss_dssp EEEECCCTTCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHHH--CCCCSCCSGGGEEECTTCCEEECCCCC
T ss_pred EEEEECCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHhC--CEEcCCccHHHEEECCCCCEEEEECCC
Confidence 999999999999999987653 899999999999999999999842 799999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
++..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 179 ~~~~~~~----------~~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 233 (360)
T 3eqc_A 179 SGQLIDS----------MANSFVGTRSYMSPERLQGTHYSVQSDIWSMGLSLVEMAVGRYPIPPP 233 (360)
T ss_dssp CHHHHHH----------C----CCCCTTCCHHHHTTCCCSHHHHHHHHHHHHHHHHHTSCCSSCC
T ss_pred Ccccccc----------cccCCCCCCCeECHHHHcCCCCCchhhHHHHHHHHHHHHhCCCCCCCC
Confidence 9765321 122356899999999999999999999999999999999999999753
No 230
>2j7t_A Serine/threonine-protein kinase 10; transferase, ATP-binding, cell cycle progression, phosphorylation, disease mutation, nucleotide- binding; HET: 274; 2.0A {Homo sapiens} PDB: 4aot_A* 3zz2_A* 2j51_A* 2jfl_A* 2jfm_A* 2uv2_A*
Probab=100.00 E-value=3.9e-37 Score=338.92 Aligned_cols=253 Identities=21% Similarity=0.292 Sum_probs=198.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceEE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~~ 779 (1009)
.++|++.+.||+|+||.||+|+++.+++.||+|++........+.+.+|++++++++||||+++++++... ...+
T Consensus 18 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~~ 92 (302)
T 2j7t_A 18 NEVWEIVGELGDGAFGKVYKAKNKETGALAAAKVIETKSEEELEDYIVEIEILATCDHPYIVKLLGAYYHD-----GKLW 92 (302)
T ss_dssp GGTEEEEEEEECSTTCCEEEEEETTTCCEEEEEEEC----CCHHHHHHHHHHHHHCCCTTBCCEEEEEECC------CEE
T ss_pred ccceeecceeccCCCeEEEEEEEcCCCcEEEEEEecCCCHHHHHHHHHHHHHHhcCCCCCEeeeeeeeeeC-----CeEE
Confidence 46899999999999999999999988999999999766555668899999999999999999999997643 6789
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLA 859 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla 859 (1009)
+||||+++++|.+++..... .+++.+++.++.|++.||.|||+. +|+||||||+||+++.++.+||+|||++
T Consensus 93 lv~e~~~~~~l~~~~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~kl~Dfg~~ 164 (302)
T 2j7t_A 93 IMIEFCPGGAVDAIMLELDR-----GLTEPQIQVVCRQMLEALNFLHSK---RIIHRDLKAGNVLMTLEGDIRLADFGVS 164 (302)
T ss_dssp EEEECCTTEEHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTSCEEECCCHHH
T ss_pred EEEEeCCCCcHHHHHHhhcc-----CCCHHHHHHHHHHHHHHHHHHhcC---CcccCCCCHHHEEECCCCCEEEEECCCC
Confidence 99999999999999886543 389999999999999999999999 9999999999999999999999999998
Q ss_pred cccCCCCCCCccccCCccccccccccccCcccc-----CCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 860 KFLSASPLGNVVETPSSSIGVKGTIGYVAPEYG-----LGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 860 ~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~-----~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
...... ........||+.|+|||++ .+..++.++||||||+++|||++|+.||...... ...
T Consensus 165 ~~~~~~--------~~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~ 231 (302)
T 2j7t_A 165 AKNLKT--------LQKRDSFIGTPYWMAPEVVMCETMKDTPYDYKADIWSLGITLIEMAQIEPPHHELNPM-----RVL 231 (302)
T ss_dssp HHHHHH--------HHC-----CCGGGCCHHHHHHHHTTSTTTTTHHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHH
T ss_pred cccccc--------ccccccccCChhhcCCeeeccccCCCCCCchhhhHHHHHHHHHHHhcCCCCCccCCHH-----HHH
Confidence 643211 0112235689999999987 4677899999999999999999999999753211 111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
....... .+.. .....+..++.+++.+|++.||++|||+.|+++
T Consensus 232 ~~~~~~~-----~~~~------------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 275 (302)
T 2j7t_A 232 LKIAKSD-----PPTL------------LTPSKWSVEFRDFLKIALDKNPETRPSAAQLLE 275 (302)
T ss_dssp HHHHHSC-----CCCC------------SSGGGSCHHHHHHHHHHSCSCTTTSCCHHHHTT
T ss_pred HHHhccC-----Cccc------------CCccccCHHHHHHHHHHcccChhhCCCHHHHhc
Confidence 1100000 0000 001123346789999999999999999999975
No 231
>2ycf_A Serine/threonine-protein kinase CHK2; transferase, anticancer, anticancer drug design; HET: YCF; 1.77A {Homo sapiens} PDB: 2yiq_A* 2w7x_A* 2ycq_A* 2ycs_A* 2w0j_A* 2yir_A* 2yit_A* 2wtj_A* 2cn8_A* 2wtc_A* 2wtd_A* 2wti_A* 2cn5_A* 2xbj_A* 2xm8_A* 2xm9_A* 2xk9_A* 2ycr_A*
Probab=100.00 E-value=6.3e-37 Score=340.41 Aligned_cols=252 Identities=24% Similarity=0.291 Sum_probs=197.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--------cchHHHHHHHHHHHhcCCCCcceEEeeeeccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--------GGSKSFAAECEALRSIRHRNLIKIVTICSSID 771 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~ 771 (1009)
.++|.+.+.||+|+||.||+|.++.+++.||||+++.... .....+.+|++++++++||||+++++++..
T Consensus 9 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~-- 86 (322)
T 2ycf_A 9 RDEYIMSKTLGSGACGEVKLAFERKTCKKVAIKIISKRKFAIGSAREADPALNVETEIEILKKLNHPCIIKIKNFFDA-- 86 (322)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECC---------------CHHHHHHHHHHCCCTTBCCEEEEEES--
T ss_pred hhceeEeeEEecCCCEEEEEEEEcCCCcEEEEEEeehhhhhhcccccchhhhhHHHHHHHHHhCCCCCCceEeeEEcC--
Confidence 4689999999999999999999998999999999864321 122458899999999999999999998753
Q ss_pred cCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc-
Q 047768 772 FKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV- 850 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~- 850 (1009)
...++||||+++++|.+++.... .+++.+++.++.|++.||.|||++ +|+||||||+||+++.++.
T Consensus 87 ----~~~~lv~e~~~~~~L~~~~~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~ 153 (322)
T 2ycf_A 87 ----EDYYIVLELMEGGELFDKVVGNK------RLKEATCKLYFYQMLLAVQYLHEN---GIIHRDLKPENVLLSSQEED 153 (322)
T ss_dssp ----SSEEEEEECCTTEETHHHHSTTC------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSSS
T ss_pred ----CceEEEEecCCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCCHHHEEEecCCCC
Confidence 23799999999999999997654 389999999999999999999999 9999999999999987664
Q ss_pred --eEEeccccccccCCCCCCCccccCCccccccccccccCccccC---CCCCCCcccchHHHHHHHHHHhCCCCCccccc
Q 047768 851 --AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL---GGEASMRGGVYSYGILLLEIFTRRRPTESMFN 925 (1009)
Q Consensus 851 --~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~ 925 (1009)
+||+|||+++..... .......||+.|+|||++. ...++.++|||||||++|||++|+.||.....
T Consensus 154 ~~~kl~Dfg~~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~ 224 (322)
T 2ycf_A 154 CLIKITDFGHSKILGET---------SLMRTLCGTPTYLAPEVLVSVGTAGYNRAVDCWSLGVILFICLSGYPPFSEHRT 224 (322)
T ss_dssp CCEEECCCTTCEECCCC---------HHHHHHHSCCTTCCHHHHHHTTTTTCTTHHHHHHHHHHHHHHHHSSCSSCSTTC
T ss_pred CeEEEccCccceecccc---------cccccccCCcCccCchhhccCCCCCCCchhhHHHHHHHHHHHHhCCCCCcccch
Confidence 999999999866432 1122356899999999863 56789999999999999999999999975433
Q ss_pred CCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 926 EGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.. .......... ....+.. ......++.+++.+|++.||++|||++|+++
T Consensus 225 ~~-~~~~~~~~~~-----------~~~~~~~--------~~~~~~~~~~li~~~l~~dP~~Rps~~~~l~ 274 (322)
T 2ycf_A 225 QV-SLKDQITSGK-----------YNFIPEV--------WAEVSEKALDLVKKLLVVDPKARFTTEEALR 274 (322)
T ss_dssp SS-CHHHHHHHTC-----------CCCCHHH--------HTTSCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HH-HHHHHHHhCc-----------cccCchh--------hhhcCHHHHHHHHHHcccCHhhCCCHHHHhh
Confidence 22 2222211110 0000100 0122346789999999999999999999985
No 232
>3com_A Serine/threonine-protein kinase 4; MST1, STE20-like kinase, PSI, structural genomics, protein structure initiative; HET: TPO; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.3e-36 Score=336.61 Aligned_cols=252 Identities=23% Similarity=0.316 Sum_probs=199.4
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
..++|.+.+.||+|+||.||+|.++.+|+.||||++.... ..+.+.+|++++++++||||+++++++... ...
T Consensus 27 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~--~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~ 99 (314)
T 3com_A 27 PEEVFDVLEKLGEGSYGSVYKAIHKETGQIVAIKQVPVES--DLQEIIKEISIMQQCDSPHVVKYYGSYFKN-----TDL 99 (314)
T ss_dssp ---CEEEEEECC----CEEEEEEETTTCCEEEEEEEETTS--CCHHHHHHHHHHHTCCCTTBCCEEEEEEET-----TEE
T ss_pred chhhhhhheeeccCCCeEEEEEEECCCCCEEEEEecCchH--HHHHHHHHHHHHHhCCCCCCccEEEEEEeC-----CEE
Confidence 4568999999999999999999999889999999996543 357889999999999999999999997643 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++++|.+++..... .+++.+++.++.|++.|+.|||+. +|+||||||+||+++.++.+||+|||+
T Consensus 100 ~lv~e~~~~~~L~~~~~~~~~-----~~~~~~~~~i~~~i~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~dfg~ 171 (314)
T 3com_A 100 WIVMEYCGAGSVSDIIRLRNK-----TLTEDEIATILQSTLKGLEYLHFM---RKIHRDIKAGNILLNTEGHAKLADFGV 171 (314)
T ss_dssp EEEEECCTTEEHHHHHHHHTC-----CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECTTCCEEECCCTT
T ss_pred EEEeecCCCCCHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CCcCCCcCHHHEEECCCCCEEEeeccc
Confidence 999999999999999975433 389999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhc
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
++...... .......||+.|+|||++.+..++.++||||||+++|||++|+.||...... .....
T Consensus 172 ~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~-----~~~~~-- 236 (314)
T 3com_A 172 AGQLTDTM--------AKRNTVIGTPFWMAPEVIQEIGYNCVADIWSLGITAIEMAEGKPPYADIHPM-----RAIFM-- 236 (314)
T ss_dssp CEECBTTB--------SCBCCCCSCGGGCCHHHHSSSCBCTTHHHHHHHHHHHHHHHSSCTTTTSCHH-----HHHHH--
T ss_pred chhhhhhc--------cccCccCCCCCccChhhcCCCCCCccccHHHHHHHHHHHHhCCCCCCCCChH-----HHHHH--
Confidence 98765321 1223456899999999999999999999999999999999999999743211 11100
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
......+... ....+...+.+++.+|++.||.+|||+.|+++
T Consensus 237 ---~~~~~~~~~~------------~~~~~~~~l~~li~~~l~~dp~~Rpt~~~ll~ 278 (314)
T 3com_A 237 ---IPTNPPPTFR------------KPELWSDNFTDFVKQCLVKSPEQRATATQLLQ 278 (314)
T ss_dssp ---HHHSCCCCCS------------SGGGSCHHHHHHHHHHTCSCTTTSCCHHHHTT
T ss_pred ---HhcCCCcccC------------CcccCCHHHHHHHHHHccCChhhCcCHHHHHh
Confidence 0000000010 01122346789999999999999999999976
No 233
>3lij_A Calcium/calmodulin dependent protein kinase with A kinase domain and 4 calmodulin...; transferase, calcium dependent protein kinase; HET: ANP; 1.90A {Cryptosporidium parvum} PDB: 3hzt_A* 3dxn_A 3l19_A*
Probab=100.00 E-value=1.1e-36 Score=358.54 Aligned_cols=252 Identities=21% Similarity=0.288 Sum_probs=197.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc--ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ--KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~--~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|+++.++..||||+++... ......+.+|+++++.++||||+++++++.. ...
T Consensus 36 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~~ 110 (494)
T 3lij_A 36 SEMYQRVKKLGSGAYGEVLLCRDKVTHVERAIKIIRKTSVSTSSNSKLLEEVAVLKLLDHPNIMKLYDFFED-----KRN 110 (494)
T ss_dssp HHHEEEEEEEECC---EEEEEEETTTCCEEEEEEEEC-----CTTHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SSE
T ss_pred hcCeEEeeEEecCCCEEEEEEEECCCCcEEEEEEEeccccCchHHHHHHHHHHHHHhCCCCCCCeEEEEEEe-----CCE
Confidence 347999999999999999999999999999999996543 2335788999999999999999999999764 367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC---CCceEEe
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH---DMVAHVS 854 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~---~~~~kl~ 854 (1009)
.++||||+++|+|.+++..... +++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+
T Consensus 111 ~~lv~e~~~~g~L~~~~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl~ 181 (494)
T 3lij_A 111 YYLVMECYKGGELFDEIIHRMK------FNEVDAAVIIKQVLSGVTYLHKH---NIVHRDLKPENLLLESKEKDALIKIV 181 (494)
T ss_dssp EEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEEC
T ss_pred EEEEEecCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CceeccCChhhEEEeCCCCCCcEEEE
Confidence 8999999999999999887643 89999999999999999999999 9999999999999976 4569999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++..... .......||+.|+|||++. +.++.++||||+||++|||++|+.||..... .+..
T Consensus 182 DfG~a~~~~~~---------~~~~~~~gt~~y~aPE~l~-~~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~~ 246 (494)
T 3lij_A 182 DFGLSAVFENQ---------KKMKERLGTAYYIAPEVLR-KKYDEKCDVWSIGVILFILLAGYPPFGGQTD-----QEIL 246 (494)
T ss_dssp CCTTCEECBTT---------BCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH
T ss_pred ECCCCeECCCC---------ccccccCCCcCeeCHHHHc-ccCCCchhHHHHHHHHHHHHhCCCCCCCCCH-----HHHH
Confidence 99999876532 1223457999999999876 5699999999999999999999999975322 1111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
..... ........ ........+.+++.+|++.||.+|||+.|+++.
T Consensus 247 ~~i~~--------~~~~~~~~--------~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 292 (494)
T 3lij_A 247 RKVEK--------GKYTFDSP--------EWKNVSEGAKDLIKQMLQFDSQRRISAQQALEH 292 (494)
T ss_dssp HHHHH--------TCCCCCSG--------GGTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTC
T ss_pred HHHHh--------CCCCCCch--------hcccCCHHHHHHHHHHCCCChhhCccHHHHhcC
Confidence 11100 00000000 000123457799999999999999999999853
No 234
>3lm5_A Serine/threonine-protein kinase 17B; STK17B, serine/threonine kinase 17B, DRAK2, DAP kinase relat apoptosis-inducing protein kinase 2; HET: QUE; 2.29A {Homo sapiens} PDB: 3lm0_A*
Probab=100.00 E-value=5e-37 Score=341.68 Aligned_cols=261 Identities=18% Similarity=0.233 Sum_probs=201.6
Q ss_pred HHHHHHHhccCccC-CcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhc-CCCCcceEEeeee
Q 047768 693 YKELSKATNEFSSS-NTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSI-RHRNLIKIVTICS 768 (1009)
Q Consensus 693 ~~~~~~~~~~~~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l-~h~niv~l~~~~~ 768 (1009)
++....-.++|.+. +.||+|+||+||+|.++.+++.||||+++.... .....+.+|+.+++++ .||||+++++++.
T Consensus 20 ~~~~~~~~~~y~~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~iv~~~~~~~ 99 (327)
T 3lm5_A 20 FQSMENFNNFYILTSKELGRGKFAVVRQCISKSTGQEYAAKFLKKRRRGQDCRAEILHEIAVLELAKSCPRVINLHEVYE 99 (327)
T ss_dssp SBCHHHHHHHEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESEETTEECHHHHHHHHHHHHHTTTCTTBCCEEEEEE
T ss_pred HHHHHhhhhEEeeccceeCCCCCeEEEEEEECCCCCEEEEEEEehhhcchHHHHHHHHHHHHHHhccCCCCEEEEEEEEE
Confidence 33334445677776 889999999999999998999999999975432 2356889999999999 5699999999975
Q ss_pred ccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC-
Q 047768 769 SIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH- 847 (1009)
Q Consensus 769 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~- 847 (1009)
. ....++||||+++|+|.+++..... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.
T Consensus 100 ~-----~~~~~lv~e~~~~~~L~~~~~~~~~----~~~~~~~~~~i~~ql~~~L~~LH~~---givH~Dikp~NIl~~~~ 167 (327)
T 3lm5_A 100 N-----TSEIILILEYAAGGEIFSLCLPELA----EMVSENDVIRLIKQILEGVYYLHQN---NIVHLDLKPQNILLSSI 167 (327)
T ss_dssp C-----SSEEEEEEECCTTEEGGGGGSSCC-----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEESCB
T ss_pred e-----CCeEEEEEEecCCCcHHHHHHHhcc----cCCCHHHHHHHHHHHHHHHHHHHHC---CeecCcCChHHEEEecC
Confidence 4 3678999999999999999865432 2489999999999999999999999 9999999999999998
Q ss_pred --CCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCccccc
Q 047768 848 --DMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFN 925 (1009)
Q Consensus 848 --~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~ 925 (1009)
++.+||+|||+++...... ......||+.|+|||++.+..++.++||||+||++|||++|+.||.....
T Consensus 168 ~~~~~~kL~Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~DiwslG~il~~ll~g~~pf~~~~~ 238 (327)
T 3lm5_A 168 YPLGDIKIVDFGMSRKIGHAC---------ELREIMGTPEYLAPEILNYDPITTATDMWNIGIIAYMLLTHTSPFVGEDN 238 (327)
T ss_dssp TTBCCEEECCGGGCEEC------------------CCCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCSSH
T ss_pred CCCCcEEEeeCccccccCCcc---------ccccccCCcCccCCeeecCCCCCchhhHHHHHHHHHHHHhCCCCCCCCCc
Confidence 7899999999998765321 12235689999999999999999999999999999999999999964322
Q ss_pred CCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 926 EGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
. ....... ......... ....+...+.+++.+|++.||++|||++|+++
T Consensus 239 ~-----~~~~~i~-~~~~~~~~~---------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~~ll~ 287 (327)
T 3lm5_A 239 Q-----ETYLNIS-QVNVDYSEE---------------TFSSVSQLATDFIQSLLVKNPEKRPTAEICLS 287 (327)
T ss_dssp H-----HHHHHHH-HTCCCCCTT---------------TTTTSCHHHHHHHHHHSCSSGGGSCCHHHHTT
T ss_pred h-----HHHHHHH-hcccccCch---------------hhcccCHHHHHHHHHHcCCChhhCcCHHHHhC
Confidence 1 1110000 000000000 00122345789999999999999999999975
No 235
>3pg1_A Mitogen-activated protein kinase, putative (MAP K protein); EPK Ser/Thr protein kinase fold, Ser/Thr protein kinase, TRA; 1.95A {Leishmania major} PDB: 3uib_A*
Probab=100.00 E-value=1.1e-36 Score=344.44 Aligned_cols=280 Identities=20% Similarity=0.220 Sum_probs=204.4
Q ss_pred HHHHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccc-----------hHHHHHHHHHHHhcCCCCcc
Q 047768 693 YKELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGG-----------SKSFAAECEALRSIRHRNLI 761 (1009)
Q Consensus 693 ~~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~-----------~~~~~~E~~~l~~l~h~niv 761 (1009)
..++....++|.+.+.||+|+||.||+|.+. +|+.||||++....... .+.+.+|++++++++||||+
T Consensus 14 ~~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv 92 (362)
T 3pg1_A 14 IAELHAMQSPYTVQRFISSGSYGAVCAGVDS-EGIPVAIKRVFNTVSDGRTVNILSDSFLCKRVLREIRLLNHFHHPNIL 92 (362)
T ss_dssp HHHHHHTTCSCEEEEEEEEETTEEEEEEECT-TSCEEEEEEECEECCTTSCEEGGGSHHHHHHHHHHHHHHHHCCCTTBC
T ss_pred HHHHHHhccceEEeEEeccCCCEEEEEEECC-CCCeEEEEeccccCCccchhhhhhhhhHHHHHHHHHHHHHhCCCcCcc
Confidence 4567778899999999999999999999986 58999999985432211 26789999999999999999
Q ss_pred eEEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCC
Q 047768 762 KIVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPS 841 (1009)
Q Consensus 762 ~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~ 841 (1009)
++++++...........++||||++ |+|.+++..... .+++..+..++.|++.||.|||++ +|+||||||+
T Consensus 93 ~~~~~~~~~~~~~~~~~~lv~e~~~-~~l~~~~~~~~~-----~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~ 163 (362)
T 3pg1_A 93 GLRDIFVHFEEPAMHKLYLVTELMR-TDLAQVIHDQRI-----VISPQHIQYFMYHILLGLHVLHEA---GVVHRDLHPG 163 (362)
T ss_dssp CCSEEEEECCTTTCCEEEEEEECCS-EEHHHHHHCTTS-----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGG
T ss_pred ceeeeEEeccCCCcceEEEEEccCC-CCHHHHHHhccc-----CCCHHHHHHHHHHHHHHHHHHHHC---cCEecCCChH
Confidence 9999986544344567899999997 699998886543 389999999999999999999999 9999999999
Q ss_pred ceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCC
Q 047768 842 NVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPT 920 (1009)
Q Consensus 842 Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~ 920 (1009)
||+++.++.+||+|||+++..... .......||+.|+|||++.+ ..++.++||||+||++|||++|+.||
T Consensus 164 NIl~~~~~~~kl~Dfg~~~~~~~~---------~~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~~l~~g~~pf 234 (362)
T 3pg1_A 164 NILLADNNDITICDFNLAREDTAD---------ANKTHYVTHRWYRAPELVMQFKGFTKLVDMWSAGCVMAEMFNRKALF 234 (362)
T ss_dssp GEEECTTCCEEECCTTC------------------------CGGGCCHHHHTTCTTCCTHHHHHHHHHHHHHHHHSSCSC
T ss_pred HEEEcCCCCEEEEecCcccccccc---------cccceecccceecCcHHhcCCCCCCcHhHHHhHHHHHHHHHhCCCCC
Confidence 999999999999999999754432 12234568999999999877 67899999999999999999999999
Q ss_pred cccccCCccHHHHHHHhcc-----------chhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCC
Q 047768 921 ESMFNEGLTLHEFAKRALP-----------EKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRME 989 (1009)
Q Consensus 921 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt 989 (1009)
...... ............ ....+.+.......+...... ........+.+++.+|++.||++|||
T Consensus 235 ~~~~~~-~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~li~~~L~~dP~~Rpt 310 (362)
T 3pg1_A 235 RGSTFY-NQLNKIVEVVGTPKIEDVVMFSSPSARDYLRNSLSNVPARAWTA---VVPTADPVALDLIAKMLEFNPQRRIS 310 (362)
T ss_dssp CCSSHH-HHHHHHHHHHCCCCHHHHHHTSCHHHHHHTTTCCCCCCCCCHHH---HSTTSCHHHHHHHHHHTCSSGGGSCC
T ss_pred CCCCHH-HHHHHHHHHcCCCChHHhhhccchhhhHHHHhhcccCChhhHHh---hCCCCCHHHHHHHHHHhcCChhhCCC
Confidence 753211 111111111111 111222222222211111100 01122345789999999999999999
Q ss_pred HHHHHH
Q 047768 990 MTDVVV 995 (1009)
Q Consensus 990 ~~evl~ 995 (1009)
+.|+++
T Consensus 311 ~~ell~ 316 (362)
T 3pg1_A 311 TEQALR 316 (362)
T ss_dssp HHHHHT
T ss_pred HHHHHc
Confidence 999976
No 236
>1u46_A ACK-1, activated CDC42 kinase 1; tyrosine kinase, transferase; 2.00A {Homo sapiens} SCOP: d.144.1.7 PDB: 1u4d_A* 1u54_A* 3eqr_A* 3eqp_B*
Probab=100.00 E-value=1.7e-37 Score=339.85 Aligned_cols=265 Identities=25% Similarity=0.357 Sum_probs=197.0
Q ss_pred hccCccCCcccccCCceEEEEEEec-CC--eEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHE-NG--MLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~-~~--~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~ 773 (1009)
.++|.+.+.||+|+||+||+|++.. ++ ..||||+++... ....+.+.+|++++++++||||+++++++..
T Consensus 17 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~---- 92 (291)
T 1u46_A 17 EKDLRLLEKLGDGSFGVVRRGEWDAPSGKTVSVAVKCLKPDVLSQPEAMDDFIREVNAMHSLDHRNLIRLYGVVLT---- 92 (291)
T ss_dssp GGGEEEEEECC----CCCEEEEEECTTSCEEEEEEEC--------CHHHHHHHHHHHHHHHCCCTTBCCEEEEECS----
T ss_pred hhHeeeeeeecCCCceeEEEEEeccCCCceeEEEEEEEccCccCCHHHHHHHHHHHHHHHhCCCCCcccEEEEEcc----
Confidence 4589999999999999999999753 23 369999986542 2234678899999999999999999999754
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEE
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHV 853 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl 853 (1009)
...++|+||+++++|.+++..... .+++.++..++.|++.|+.|||++ +|+||||||+||+++.++.+||
T Consensus 93 --~~~~~v~e~~~~~~L~~~l~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dikp~Nili~~~~~~kl 162 (291)
T 1u46_A 93 --PPMKMVTELAPLGSLLDRLRKHQG-----HFLLGTLSRYAVQVAEGMGYLESK---RFIHRDLAARNLLLATRDLVKI 162 (291)
T ss_dssp --SSCEEEEECCTTCBHHHHHHHHGG-----GSCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEEEETTEEEE
T ss_pred --CCceeeEecccCCCHHHHHHhccC-----CcCHHHHHHHHHHHHHHHHHHHhC---CcccCCCchheEEEcCCCCEEE
Confidence 236899999999999999987543 389999999999999999999999 9999999999999999999999
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHH
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~ 932 (1009)
+|||+++........ ........+|..|+|||++.+..++.++||||||+++|||++ |+.||..... ..
T Consensus 163 ~Dfg~~~~~~~~~~~-----~~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~~g~~p~~~~~~-----~~ 232 (291)
T 1u46_A 163 GDFGLMRALPQNDDH-----YVMQEHRKVPFAWCAPESLKTRTFSHASDTWMFGVTLWEMFTYGQEPWIGLNG-----SQ 232 (291)
T ss_dssp CCCTTCEECCC-CCE-----EEC-----CCGGGCCHHHHHHCEEEHHHHHHHHHHHHHHHHTTSCCTTTTCCH-----HH
T ss_pred ccccccccccccccc-----hhhhccCCCCceeeCchhhcCCCCCchhhHHHHHHHHHHHHhCCCCCcccCCH-----HH
Confidence 999999876543210 011223457889999999998899999999999999999999 9999974321 11
Q ss_pred HHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhhc
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFLG 1006 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~~ 1006 (1009)
.......... ... ....+..++.+++.+|++.||++|||+.|+++.|+++...-..
T Consensus 233 ~~~~~~~~~~-------~~~-----------~~~~~~~~l~~li~~~l~~~p~~Rps~~~l~~~l~~~~~~~~~ 288 (291)
T 1u46_A 233 ILHKIDKEGE-------RLP-----------RPEDCPQDIYNVMVQCWAHKPEDRPTFVALRDFLLEAQPTDMR 288 (291)
T ss_dssp HHHHHHTSCC-------CCC-----------CCTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHC-----
T ss_pred HHHHHHccCC-------CCC-----------CCcCcCHHHHHHHHHHccCCcccCcCHHHHHHHHHHhCccchh
Confidence 1111100000 000 0112335688999999999999999999999999988765443
No 237
>1blx_A Cyclin-dependent kinase 6; inhibitor protein, cyclin-dependent kinase, cell cycle control, alpha/beta, complex (inhibitor protein/kinase); 1.90A {Homo sapiens} SCOP: d.144.1.7 PDB: 1bi7_A 1bi8_A 1g3n_A 2f2c_B* 1jow_B* 2euf_B* 1xo2_B* 3nup_A* 3nux_A* 2w9z_B 2w99_B 2w96_B 2w9f_B
Probab=100.00 E-value=1.2e-36 Score=339.12 Aligned_cols=279 Identities=21% Similarity=0.310 Sum_probs=205.4
Q ss_pred HhccCccCCcccccCCceEEEEEEe-cCCeEEEEEEeecccc--cchHHHHHHHHHHHhc---CCCCcceEEeeeecccc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLH-ENGMLVAVKVINLEQK--GGSKSFAAECEALRSI---RHRNLIKIVTICSSIDF 772 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~-~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l---~h~niv~l~~~~~~~~~ 772 (1009)
..++|.+.+.||+|+||.||+|++. .+++.||||+++.... .....+.+|+++++.+ +||||+++++++.....
T Consensus 9 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~~~~h~~i~~~~~~~~~~~~ 88 (326)
T 1blx_A 9 ADQQYECVAEIGEGAYGKVFKARDLKNGGRFVALKRVRVQTGEEGMPLSTIREVAVLRHLETFEHPNVVRLFDVCTVSRT 88 (326)
T ss_dssp GGGTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEEEEEBCTTSCBCTHHHHHHHHHHHHHTCCTTBCCEEEEEEEEEC
T ss_pred chhceeeeeeecccccEEEEEEEecCCCCEEEEEEEeccCcccccCCchhhHHHHHHHhhhccCCCCeEeeeeeeeeccc
Confidence 4578999999999999999999995 6789999999965432 2234677888887776 89999999999874333
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceE
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~k 852 (1009)
......++||||++ |+|.+++...... .+++.+++.++.|++.||.|||++ +|+||||||+||+++.++.+|
T Consensus 89 ~~~~~~~lv~e~~~-~~L~~~l~~~~~~----~~~~~~~~~~~~qi~~~l~~lH~~---gi~H~dlkp~Nili~~~~~~k 160 (326)
T 1blx_A 89 DRETKLTLVFEHVD-QDLTTYLDKVPEP----GVPTETIKDMMFQLLRGLDFLHSH---RVVHRDLKPQNILVTSSGQIK 160 (326)
T ss_dssp SSEEEEEEEEECCS-CBHHHHHHHSCTT----CSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEE
T ss_pred CCCceEEEEEecCC-CCHHHHHHhcccC----CCCHHHHHHHHHHHHHHHHHHHHC---CceeccCCHHHeEEcCCCCEE
Confidence 44577899999997 6999999875432 389999999999999999999999 999999999999999999999
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHH
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHE 932 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~ 932 (1009)
|+|||+++..... .......||+.|+|||++.+..++.++|||||||++|||++|+.||....... ....
T Consensus 161 l~Dfg~~~~~~~~---------~~~~~~~~~~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~ 230 (326)
T 1blx_A 161 LADFGLARIYSFQ---------MALTSVVVTLWYRAPEVLLQSSYATPVDLWSVGCIFAEMFRRKPLFRGSSDVD-QLGK 230 (326)
T ss_dssp ECSCCSCCCCCGG---------GGGCCCCCCCTTCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHH
T ss_pred EecCcccccccCC---------CCccccccccceeCHHHHhcCCCCcchhHHHHHHHHHHHHcCCCCCCCCCHHH-HHHH
Confidence 9999999865421 12234568999999999999999999999999999999999999997532211 1111
Q ss_pred HHHHhccchhhhccCCCCCChhh---hhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 933 FAKRALPEKVMEIVDPSLLPLEE---ERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 933 ~~~~~~~~~~~~~~d~~l~~~~~---~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
...........+........... ................+.+++.+|++.||++|||+.|+++
T Consensus 231 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 296 (326)
T 1blx_A 231 ILDVIGLPGEEDWPRDVALPRQAFHSKSAQPIEKFVTDIDELGKDLLLKCLTFNPAKRISAYSALS 296 (326)
T ss_dssp HHHHHCCCCGGGSCTTCSSCGGGSCCCCCCCGGGTCCSCCHHHHHHHHHHSCSSTTTSCCHHHHHT
T ss_pred HHHHcCCCCcccCccccccchhhhcccCcchhhhccccCCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 11111100000000000000000 0000000011123456789999999999999999999985
No 238
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=100.00 E-value=6.6e-37 Score=359.92 Aligned_cols=330 Identities=22% Similarity=0.218 Sum_probs=212.9
Q ss_pred CCCCCC-C--CccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCcccccccccccc
Q 047768 52 ACVNLC-Q--HWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANN 128 (1009)
Q Consensus 52 ~~~~~c-~--~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N 128 (1009)
.|+..| | .|..|.|... +++ .+|..+. +++++|+|++|++++..|..|.++++|++|+|++|
T Consensus 2 ~Cp~~C~C~~~~~~v~c~~~------------~l~-~ip~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 66 (477)
T 2id5_A 2 GCPPRCECSAQDRAVLCHRK------------RFV-AVPEGIP--TETRLLDLGKNRIKTLNQDEFASFPHLEELELNEN 66 (477)
T ss_dssp CCSTTCEEETTTTEEECCSC------------CCS-SCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTS
T ss_pred cccCCCeECCCCCEEEeCCC------------CcC-cCCCCCC--CCCcEEECCCCccceECHhHccCCCCCCEEECCCC
Confidence 477667 2 3567777543 333 2344443 57899999999999888889999999999999999
Q ss_pred ccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCC
Q 047768 129 SFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKI 208 (1009)
Q Consensus 129 ~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 208 (1009)
.+++..|..|+++++|++|+|++|+++ +..+..|+++++|++|+|++|++.+..
T Consensus 67 ~i~~~~~~~~~~l~~L~~L~L~~n~l~--------------------------~~~~~~~~~l~~L~~L~Ls~n~i~~~~ 120 (477)
T 2id5_A 67 IVSAVEPGAFNNLFNLRTLGLRSNRLK--------------------------LIPLGVFTGLSNLTKLDISENKIVILL 120 (477)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCC--------------------------SCCTTSSTTCTTCCEEECTTSCCCEEC
T ss_pred ccCEeChhhhhCCccCCEEECCCCcCC--------------------------ccCcccccCCCCCCEEECCCCccccCC
Confidence 999888888888888888777776665 223334455555555555555555555
Q ss_pred CcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcc
Q 047768 209 PITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNA 288 (1009)
Q Consensus 209 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 288 (1009)
|..|..+++|++|+|++|.+++..|..|.++++|++|+|++|+++ .+|...+.++++|+.|+|++|.+.+..+..|..+
T Consensus 121 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~-~~~~~~l~~l~~L~~L~l~~n~i~~~~~~~~~~l 199 (477)
T 2id5_A 121 DYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLT-SIPTEALSHLHGLIVLRLRHLNINAIRDYSFKRL 199 (477)
T ss_dssp TTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCS-SCCHHHHTTCTTCCEEEEESCCCCEECTTCSCSC
T ss_pred hhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCc-ccChhHhcccCCCcEEeCCCCcCcEeChhhcccC
Confidence 555555555555556555555555555555555566666666665 5666666667777778888777777777778888
Q ss_pred cccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcc
Q 047768 289 SNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLST 368 (1009)
Q Consensus 289 ~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 368 (1009)
++|++|++++|.+.+..+..+... .+|++|+|++|++++..+..+..+ .
T Consensus 200 ~~L~~L~l~~~~~~~~~~~~~~~~------------------------------~~L~~L~l~~n~l~~~~~~~~~~l-~ 248 (477)
T 2id5_A 200 YRLKVLEISHWPYLDTMTPNCLYG------------------------------LNLTSLSITHCNLTAVPYLAVRHL-V 248 (477)
T ss_dssp TTCCEEEEECCTTCCEECTTTTTT------------------------------CCCSEEEEESSCCCSCCHHHHTTC-T
T ss_pred cccceeeCCCCccccccCcccccC------------------------------ccccEEECcCCcccccCHHHhcCc-c
Confidence 888888888776655443322222 245555555555553333344444 4
Q ss_pred cceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCccccccccccccccc
Q 047768 369 ALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFG 448 (1009)
Q Consensus 369 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 448 (1009)
.|+.|+|++|.+++..+..|.++++|+.|+|++|++++..|..|.++++|++|+|++|++++..+..|..+++|++|+|+
T Consensus 249 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~ 328 (477)
T 2id5_A 249 YLRFLNLSYNPISTIEGSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQLTTLEESVFHSVGNLETLILD 328 (477)
T ss_dssp TCCEEECCSSCCCEECTTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSCCSCCCGGGBSCGGGCCEEECC
T ss_pred ccCeeECCCCcCCccChhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCcCceeCHhHcCCCcccCEEEcc
Confidence 45555555555555555556666666666666666666666666666666666666666665555556666666666666
Q ss_pred Cccccc
Q 047768 449 ANNLQG 454 (1009)
Q Consensus 449 ~N~l~~ 454 (1009)
+|.+..
T Consensus 329 ~N~l~c 334 (477)
T 2id5_A 329 SNPLAC 334 (477)
T ss_dssp SSCEEC
T ss_pred CCCccC
Confidence 666653
No 239
>3eb0_A Putative uncharacterized protein; kinase cryptosporidium parvum, ATP-binding, kinase, nucleoti binding; HET: PTR DRK; 2.65A {Cryptosporidium parvum iowa II}
Probab=100.00 E-value=6.2e-37 Score=348.81 Aligned_cols=285 Identities=21% Similarity=0.251 Sum_probs=201.3
Q ss_pred HHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeecccc----
Q 047768 697 SKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDF---- 772 (1009)
Q Consensus 697 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~---- 772 (1009)
....++|.+.+.||+|+||+||+|++..+|+.||||++.... ....+|+++++.++||||+++++++.....
T Consensus 3 ~~~~~~y~~~~~lG~G~fg~V~~a~~~~~~~~vAiK~~~~~~----~~~~~E~~il~~l~hpnIv~l~~~~~~~~~~~~~ 78 (383)
T 3eb0_A 3 ETSSKKYSLGKTLGTGSFGIVCEVFDIESGKRFALKKVLQDP----RYKNRELDIMKVLDHVNIIKLVDYFYTTGDEEPK 78 (383)
T ss_dssp ---CTTEEEEEEEECC-CEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHTTCCCTTBCCEEEEEEEC------
T ss_pred ccccceEEEEEEEEeccCEEEEEEEECCCCCEEEEEEEecCc----chHHHHHHHHHHcCCCCccchhheeeecCccccc
Confidence 345678999999999999999999999999999999986432 223479999999999999999999754321
Q ss_pred -----------------------------CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHH
Q 047768 773 -----------------------------KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVE 823 (1009)
Q Consensus 773 -----------------------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~ 823 (1009)
......++||||++ |+|.+.+...... ...+++..++.++.|++.||+
T Consensus 79 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~--~~~l~~~~~~~i~~qi~~aL~ 155 (383)
T 3eb0_A 79 PPQPPDDHNKLGGKNNGVNNHHKSVIVNPSQNKYLNVIMEYVP-DTLHKVLKSFIRS--GRSIPMNLISIYIYQLFRAVG 155 (383)
T ss_dssp -------------------------------CCEEEEEECCCS-EEHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccccccccccCCCceEEEEEEecCC-ccHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHH
Confidence 23455889999997 5888777642111 124899999999999999999
Q ss_pred HHhhcCCCCceecCCCCCceeeC-CCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcc
Q 047768 824 YLHHHCQPPIVHGDLKPSNVLLD-HDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRG 901 (1009)
Q Consensus 824 ~LH~~~~~~ivHrdlk~~Nill~-~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~ 901 (1009)
|||++ +|+||||||+||+++ .++.+||+|||+|+...... ......||+.|+|||++.+. .++.++
T Consensus 156 ~LH~~---gi~H~Dikp~Nil~~~~~~~~kl~Dfg~a~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~ 223 (383)
T 3eb0_A 156 FIHSL---GICHRDIKPQNLLVNSKDNTLKLCDFGSAKKLIPSE---------PSVAYICSRFYRAPELMLGATEYTPSI 223 (383)
T ss_dssp HHHTT---TEECSCCCGGGEEEETTTTEEEECCCTTCEECCTTS---------CCCCCCCCSSCCCHHHHTTCSSCCTHH
T ss_pred HHHHC---cCccCccCHHHEEEcCCCCcEEEEECCCCcccCCCC---------CCcCcccCCCccCHHHhcCCCCCCcch
Confidence 99999 999999999999997 68999999999998764431 22345689999999998775 489999
Q ss_pred cchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccc---hhhhccCCCCCC--hhhh-hhhccccccHHHHHHHHHH
Q 047768 902 GVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPE---KVMEIVDPSLLP--LEEE-RTNSRRVRNEECLVAVIKT 975 (1009)
Q Consensus 902 DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~---~~~~~~d~~l~~--~~~~-r~~~~~~~~~~~~~~l~~l 975 (1009)
||||+||++|||++|+.||...... ............. .+... ++.... .+.. ..............++.++
T Consensus 224 DiwslG~il~ell~g~~pf~~~~~~-~~~~~i~~~~g~p~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 301 (383)
T 3eb0_A 224 DLWSIGCVFGELILGKPLFSGETSI-DQLVRIIQIMGTPTKEQMIRM-NPHYTEVRFPTLKAKDWRKILPEGTPSLAIDL 301 (383)
T ss_dssp HHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHHCCCCHHHHHHH-CTTC--CCCCCCCCCCHHHHSCTTCCHHHHHH
T ss_pred hhhhHHHHHHHHHhCCCCCCCCChH-HHHHHHHHHhCCCCHHHHHHh-CcccccccCCccCcccHHhhCCCCCCHHHHHH
Confidence 9999999999999999999753222 1122222111111 01110 000000 0000 0000001111234568899
Q ss_pred HhhccCCCCCCCCCHHHHHH--HHHHHHH
Q 047768 976 GVACSIESPFDRMEMTDVVV--KLCHARQ 1002 (1009)
Q Consensus 976 ~~~cl~~dp~~Rpt~~evl~--~L~~i~~ 1002 (1009)
+.+|++.||++|||+.|+++ .+.++++
T Consensus 302 i~~~L~~dP~~R~t~~e~l~hp~f~~~~~ 330 (383)
T 3eb0_A 302 LEQILRYEPDLRINPYEAMAHPFFDHLRN 330 (383)
T ss_dssp HHHHCCSSGGGSCCHHHHHTSGGGHHHHH
T ss_pred HHHHccCChhhCCCHHHHhcCHHHHHHHh
Confidence 99999999999999999985 3444443
No 240
>2r3i_A Cell division protein kinase 2; serine/threonine-protein kinase, cell cycle, inhibition, cyclin-dependent kinase, cancer, ATP-binding; HET: SCF; 1.28A {Homo sapiens} PDB: 2r3j_A* 2r3k_A* 2r3l_A* 2r3m_A* 2r3n_A* 2r3o_A* 2r3p_A* 2r3q_A* 1jvp_P* 1buh_A 1ckp_A* 1di8_A* 1dm2_A* 1f5q_A 1fin_A* 1fq1_B* 1fvt_A* 1fvv_A* 1g5s_A* 1gih_A* ...
Probab=100.00 E-value=1.2e-36 Score=334.55 Aligned_cols=273 Identities=22% Similarity=0.335 Sum_probs=200.5
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
++|.+.+.||+|+||.||+|+++.+|+.||||+++.... ...+.+.+|++++++++||||+++++++... ...
T Consensus 3 ~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~~~ 77 (299)
T 2r3i_A 3 ENFQKVEKIGEGTYGVVYKARNKLTGEVVALKKIRLDTETEGVPSTAIREISLLKELNHPNIVKLLDVIHTE-----NKL 77 (299)
T ss_dssp TTEEEEEEEEECSSSEEEEEEETTTCCEEEEEEC--------CCHHHHHHHHHHTTCCCTTBCCEEEEEEET-----TEE
T ss_pred chhhhhhhhccCCCeeEEEEEEcCCCceEEEEEeecCccchhhHHHHHHHHHHHHHcCCCCeeeEEEEEecC-----Cce
Confidence 578899999999999999999998999999999865432 2346788999999999999999999997643 678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||++ ++|.+++...... .+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 78 ~lv~e~~~-~~L~~~~~~~~~~----~~~~~~~~~~~~~i~~~l~~lH~~---~i~H~dlkp~Nili~~~~~~kl~dfg~ 149 (299)
T 2r3i_A 78 YLVFEFLH-QDLKKFMDASALT----GIPLPLIKSYLFQLLQGLAFCHSH---RVLHRDLKPQNLLINTEGAIKLADFGL 149 (299)
T ss_dssp EEEEECCS-EEHHHHHHHTTTT----CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCEEECSTTH
T ss_pred EEEEEccc-CCHHHHHHhhhcc----CCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHeEEcCCCCEEECcchh
Confidence 99999997 6999999875422 388999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCC-CCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGE-ASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++...... .......||+.|+|||++.+.. ++.++|||||||++|||++|+.||......+ .........
T Consensus 150 ~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~~l~~l~~g~~pf~~~~~~~-~~~~~~~~~ 220 (299)
T 2r3i_A 150 ARAFGVPV--------RTYTHEVVTLWYRAPEILLGAKYYSTAVDIWSLGCIFAEMVTRRALFPGDSEID-QLFRIFRTL 220 (299)
T ss_dssp HHHHCCCS--------BCTTSCBCCCTTCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHHHH
T ss_pred hhhccCCc--------cccCcccccccccCcHHhhccccCChHHHHHHHHHHHHHHHhCCCCCCCccHHH-HHHHHHHHh
Confidence 98764321 1122346899999999988765 7999999999999999999999997533211 111111111
Q ss_pred c-cch-h-hhccC-CCCCC-hhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 L-PEK-V-MEIVD-PSLLP-LEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~-~~~-~-~~~~d-~~l~~-~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
. +.. . ..... +.... .+................++.+++.+|++.||++|||+.|+++
T Consensus 221 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~~~l~ 283 (299)
T 2r3i_A 221 GTPDEVVWPGVTSMPDYKPSFPKWARQDFSKVVPPLDEDGRSLLSQMLHYDPNKRISAKAALA 283 (299)
T ss_dssp CCCCTTTSTTGGGSTTCCTTSCCCCCCCHHHHSTTCCHHHHHHHHHHTCSSTTTSCCHHHHHT
T ss_pred CCCchhhhhHhhcCcccchhhhcccchhhHhhCCCCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 1 000 0 00000 00000 0000000000000112356789999999999999999999976
No 241
>2fst_X Mitogen-activated protein kinase 14; active mutants, lipids, MAP kinase insertion, autophosphorylation, transferase; HET: BOG; 1.45A {Homo sapiens} PDB: 2fso_X* 2fsl_X* 2fsm_X* 2npq_A* 2bal_A* 2baj_A* 2bak_A* 2baq_A* 2qd9_A* 1ian_A* 2rg5_A* 2rg6_A* 3bv2_A* 3bv3_A* 3bx5_A* 3c5u_A* 3cg2_A* 3l8x_A* 3mvl_A* 3mvm_A* ...
Probab=100.00 E-value=4.6e-37 Score=346.55 Aligned_cols=269 Identities=19% Similarity=0.240 Sum_probs=185.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeecc-ccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSI-DFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~-~~~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|.+..+|+.||||++..... ...+.+.+|+++++.++||||+++++++... ......
T Consensus 28 ~~~y~~~~~lG~G~~g~V~~a~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~hpnIv~~~~~~~~~~~~~~~~ 107 (367)
T 2fst_X 28 PERYQNLSPVGSGAYGSVCAAFDTKTGLRVAVKKLSRPFQSIIHAKRTYRELRLLKHMKHENVIGLLDVFTPARSLEEFN 107 (367)
T ss_dssp ETTEEEEEECC----CCEEEEEETTTTEEEEEEECSSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CCceEEeeEEeecCCeEEEEEEECCCCCEEEEEEeCccccCHHHHHHHHHHHHHHHhCCCCCCCcEEEEEecCCccccCC
Confidence 3689999999999999999999999999999999864322 2346788999999999999999999997643 122335
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++|+||+ +++|.++++.. .+++..+..++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 108 ~~~lv~e~~-~~~L~~~~~~~-------~l~~~~~~~i~~qi~~aL~~LH~~---givH~Dlkp~NIll~~~~~~kL~DF 176 (367)
T 2fst_X 108 DVYLVTHLM-GADLNNIVKCQ-------KLTDDHVQFLIYQILRGLKYIHSA---DIIHRDLKPSNLAVNEDCELKILDF 176 (367)
T ss_dssp CCEEEEECC-CEECC-----C-------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTCCEEECC-
T ss_pred eEEEEeccc-CCCHHHHHhcC-------CCCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHhhEEECCCCCEEEeec
Confidence 679999999 78999988753 289999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||...... ..+.....
T Consensus 177 G~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~ell~g~~pf~~~~~~-~~l~~i~~ 244 (367)
T 2fst_X 177 GLARHTADE-----------MTGYVATRWYRAPEIMLNWMHYNQTVDIWSVGCIMAELLTGRTLFPGTDHI-DQLKLILR 244 (367)
T ss_dssp -------------------------CCCTTCCHHHHTTCCSCCTTHHHHHHHHHHHHHHHSSCSCCCSSHH-HHHHHHHH
T ss_pred ccccccccc-----------CCCcCcCcCccChHHHcCCcCCCchhhHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHH
Confidence 999865321 224578999999999887 67899999999999999999999999753221 11111111
Q ss_pred Hhccc--h---------hhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPE--K---------VMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~--~---------~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
..... + ....+...- ..+.... ..........+.+++.+|++.||++|||+.|+++
T Consensus 245 ~~g~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~~---~~~~~~~~~~~~dLl~~mL~~dP~~R~t~~e~L~ 311 (367)
T 2fst_X 245 LVGTPGAELLKKISSESARNYIQSLT-QMPKMNF---ANVFIGANPLAVDLLEKMLVLDSDKRITAAQALA 311 (367)
T ss_dssp HHCSCCHHHHTTCCCHHHHHHHHTSC-CCCCCCH---HHHTTTCCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhCCCCHHHHHHhhhHHHHHHHhccC-CCCCCCH---HHHCCCCCHHHHHHHHHhCCCCcccCcCHHHHhc
Confidence 11100 0 111110000 0000000 0000012345789999999999999999999975
No 242
>3q5i_A Protein kinase; CDPK, malaria, phosphotransferase, structural genomics, structural genomic consortium, SGC, transferase; HET: ANP; 2.10A {Plasmodium berghei}
Probab=100.00 E-value=2e-36 Score=357.19 Aligned_cols=252 Identities=23% Similarity=0.288 Sum_probs=199.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-------------cchHHHHHHHHHHHhcCCCCcceEEee
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-------------GGSKSFAAECEALRSIRHRNLIKIVTI 766 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------------~~~~~~~~E~~~l~~l~h~niv~l~~~ 766 (1009)
.++|.+.++||+|+||+||+|+++.+++.||||+++.... ...+.+.+|++++++++||||++++++
T Consensus 35 ~~~Y~~~~~lG~G~~g~V~~~~~~~~~~~~aiK~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~ 114 (504)
T 3q5i_A 35 GESYFKVRKLGSGAYGEVLLCKEKNGHSEKAIKVIKKSQFDKGRYSDDNKNIEKFHEEIYNEISLLKSLDHPNIIKLFDV 114 (504)
T ss_dssp GGTEEEEEEEEC--CEEEEEEEETTTCCEEEEEEEEC----------------CTHHHHHHHHHHHHTCCCTTBCCEEEE
T ss_pred ccceEEEeEecccCCeEEEEEEECCCCcEEEEEEEEhhhcccccccccchhhHHHHHHHHHHHHHHHhCCCCCCCeEEEE
Confidence 4689999999999999999999999999999999964321 234678899999999999999999999
Q ss_pred eeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC
Q 047768 767 CSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD 846 (1009)
Q Consensus 767 ~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~ 846 (1009)
+.. ....++||||+++|+|.+++..... +++..+..++.|++.||+|||+. +|+||||||+||+++
T Consensus 115 ~~~-----~~~~~lv~e~~~gg~L~~~l~~~~~------~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~ 180 (504)
T 3q5i_A 115 FED-----KKYFYLVTEFYEGGELFEQIINRHK------FDECDAANIMKQILSGICYLHKH---NIVHRDIKPENILLE 180 (504)
T ss_dssp EEC-----SSEEEEEEECCTTCBHHHHHHHHSC------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEES
T ss_pred EEc-----CCEEEEEEecCCCCcHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeEeCCCcHHHEEEe
Confidence 754 3778999999999999999987643 89999999999999999999999 999999999999998
Q ss_pred CCC---ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 847 HDM---VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 847 ~~~---~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
.++ .+||+|||+++..... .......||+.|+|||++. +.++.++||||+||++|||++|+.||...
T Consensus 181 ~~~~~~~~kl~Dfg~a~~~~~~---------~~~~~~~gt~~y~aPE~~~-~~~~~~~DiwslG~il~~ll~g~~pf~~~ 250 (504)
T 3q5i_A 181 NKNSLLNIKIVDFGLSSFFSKD---------YKLRDRLGTAYYIAPEVLK-KKYNEKCDVWSCGVIMYILLCGYPPFGGQ 250 (504)
T ss_dssp STTCCSSEEECCCTTCEECCTT---------SCBCCCCSCTTTCCHHHHT-TCBCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cCCCCccEEEEECCCCEEcCCC---------CccccccCCcCCCCHHHhc-cCCCchHHHHHHHHHHHHHHhCCCCCCCC
Confidence 776 6999999999876542 1223456999999999976 56899999999999999999999999753
Q ss_pred ccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 924 FNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.. ........ .......... ......++.+++.+|++.||.+|||++|+++.
T Consensus 251 ~~-----~~~~~~i~--------~~~~~~~~~~--------~~~~s~~~~~li~~~L~~dp~~R~t~~e~l~h 302 (504)
T 3q5i_A 251 ND-----QDIIKKVE--------KGKYYFDFND--------WKNISDEAKELIKLMLTYDYNKRCTAEEALNS 302 (504)
T ss_dssp SH-----HHHHHHHH--------HCCCCCCHHH--------HTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred CH-----HHHHHHHH--------cCCCCCCccc--------cCCCCHHHHHHHHHHcCCChhHCCCHHHHhcC
Confidence 21 11111110 0000000000 00123457899999999999999999999753
No 243
>3nyv_A Calmodulin-domain protein kinase 1; serine/threonine protein kinase, transferase, calcium-bindin binding, EF hand, bumped kinase inhibitor; HET: MSE DTQ; 1.88A {Toxoplasma gondii} PDB: 3i79_A* 3i7b_A* 3n51_A* 3i7c_A* 3sx9_A* 3sxf_A* 3t3u_A* 3t3v_A* 3upx_A* 3upz_A* 3v51_A* 3v5p_A* 3v5t_A* 3ku2_A* 3hx4_A*
Probab=100.00 E-value=7.3e-37 Score=359.67 Aligned_cols=252 Identities=26% Similarity=0.334 Sum_probs=202.9
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc---ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ---KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||+||+|+++.+++.||||++.... ....+.+.+|++++++++||||+++++++.. ..
T Consensus 25 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~E~~~l~~l~hpniv~~~~~~~~-----~~ 99 (484)
T 3nyv_A 25 SDRYKGQRVLGKGSFGEVILCKDKITGQECAVKVISKRQVKQKTDKESLLREVQLLKQLDHPNIMKLYEFFED-----KG 99 (484)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEETTTCCBSSCHHHHHHHHHHHTTCCCTTBCCEEEEEEC-----SS
T ss_pred cCceEEeeEEecCCCEEEEEEEECCCCCEEEEEEEEhhhcccchHHHHHHHHHHHHHhCCCCCCCcEEEEEEe-----CC
Confidence 357999999999999999999999999999999996442 2345789999999999999999999999754 36
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee---CCCCceEE
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL---DHDMVAHV 853 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill---~~~~~~kl 853 (1009)
..++||||+.+|+|.+++..... +++.+++.++.|++.||.|||++ +|+||||||+||++ +.++.+||
T Consensus 100 ~~~lv~e~~~~~~L~~~~~~~~~------~~~~~~~~i~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~~~kl 170 (484)
T 3nyv_A 100 YFYLVGEVYTGGELFDEIISRKR------FSEVDAARIIRQVLSGITYMHKN---KIVHRDLKPENLLLESKSKDANIRI 170 (484)
T ss_dssp EEEEEECCCCSCBHHHHHHTCSC------CBHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESSSSTTCCEEE
T ss_pred EEEEEEecCCCCCHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHHC---CeeeCCCCHHHEEEecCCCCCcEEE
Confidence 88999999999999999987543 89999999999999999999999 99999999999999 56789999
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
+|||+++..... .......||+.|+|||++.+ .++.++||||+||++|||++|+.||..... ...
T Consensus 171 ~Dfg~a~~~~~~---------~~~~~~~gt~~y~aPE~~~~-~~~~~~DiwslG~il~~ll~g~~pf~~~~~-----~~~ 235 (484)
T 3nyv_A 171 IDFGLSTHFEAS---------KKMKDKIGTAYYIAPEVLHG-TYDEKCDVWSTGVILYILLSGCPPFNGANE-----YDI 235 (484)
T ss_dssp CCTTHHHHBCCC---------CSHHHHTTGGGTCCHHHHHT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHH
T ss_pred EeeeeeEEcccc---------cccccCCCCccccCceeecC-CCCCcceeHHHHHHHHHHHHCCCCCCCCCH-----HHH
Confidence 999999876543 12234579999999999866 689999999999999999999999974321 111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
..... ........ ........++.+++.+|++.||.+|||+.|+++.
T Consensus 236 ~~~i~--------~~~~~~~~--------~~~~~~s~~~~~li~~~L~~dp~~R~s~~e~l~h 282 (484)
T 3nyv_A 236 LKKVE--------KGKYTFEL--------PQWKKVSESAKDLIRKMLTYVPSMRISARDALDH 282 (484)
T ss_dssp HHHHH--------HCCCCCCS--------GGGGGSCHHHHHHHHHHTCSSGGGSCCHHHHHTS
T ss_pred HHHHH--------cCCCCCCC--------cccccCCHHHHHHHHHHCCCChhHCcCHHHHhhC
Confidence 11110 00000000 0001223457899999999999999999999863
No 244
>2vwi_A Serine/threonine-protein kinase OSR1; STE kinase, hypertension, transferase; HET: ANP; 2.15A {Homo sapiens} PDB: 3dak_A*
Probab=100.00 E-value=2.2e-37 Score=341.05 Aligned_cols=271 Identities=21% Similarity=0.267 Sum_probs=184.6
Q ss_pred HHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc-ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCc
Q 047768 698 KATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ-KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 698 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~ 776 (1009)
...++|.+.+.||+|+||.||+|.+..+++.||||++.... ....+.+.+|++++++++||||+++++++... .
T Consensus 12 i~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~~-----~ 86 (303)
T 2vwi_A 12 INRDDYELQEVIGSGATAVVQAAYCAPKKEKVAIKRINLEKCQTSMDELLKEIQAMSQCHHPNIVSYYTSFVVK-----D 86 (303)
T ss_dssp -CCCCCEEEEECC---CCCEEEEEC----CEEEEECCC----------------CCCCCCCTTBCCEEEEEESS-----S
T ss_pred cchhhhhhhheeccccceEEEEEEECCCCcEEEEEEEEhhhcchhHHHHHHHHHHHhhcCCCCEeeEEEEEeec-----C
Confidence 44578999999999999999999998889999999986543 23346788999999999999999999987643 5
Q ss_pred eEEEEEeccCCCCHHHHHhccCCC--CCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQ--LGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~--~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
..++||||+++++|.+++...... .....+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 87 ~~~lv~e~~~~~~L~~~l~~~~~~~~~~~~~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~~~~kl~ 163 (303)
T 2vwi_A 87 ELWLVMKLLSGGSVLDIIKHIVAKGEHKSGVLDESTIATILREVLEGLEYLHKN---GQIHRDVKAGNILLGEDGSVQIA 163 (303)
T ss_dssp CEEEEEECCTTCBHHHHHHHHHHTTTTTTCSSCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEEEC
T ss_pred CcEEEehhccCCchHHHHHHHhhccccccCCCCHHHHHHHHHHHHHHHHHHHhC---CCCCCCCChhhEEEcCCCCEEEE
Confidence 689999999999999999752110 0112489999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
|||+++........ ..........||+.|+|||++.+ ..++.++||||||+++|||++|+.||....... ....
T Consensus 164 dfg~~~~~~~~~~~---~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~--~~~~ 238 (303)
T 2vwi_A 164 DFGVSAFLATGGDI---TRNKVRKTFVGTPCWMAPEVMEQVRGYDFKADIWSFGITAIELATGAAPYHKYPPMK--VLML 238 (303)
T ss_dssp CCHHHHHCC------------------CCCTTCCHHHHHHHHCCCTHHHHHHHHHHHHHHHHSSCTTTTSCGGG--HHHH
T ss_pred eccchheeccCCCc---cchhhhcccCCCccccCHHHhccccCCCchhhHHHHHHHHHHHHhCCCCCccCchhh--HHHH
Confidence 99999876543110 01112234578999999999876 568999999999999999999999997543221 1111
Q ss_pred HHHhccchhhh-ccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 934 AKRALPEKVME-IVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 934 ~~~~~~~~~~~-~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.....+..... ..+... ...+..++.+++.+||+.||++|||+.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~--------------~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 287 (303)
T 2vwi_A 239 TLQNDPPSLETGVQDKEM--------------LKKYGKSFRKMISLCLQKDPEKRPTAAELLR 287 (303)
T ss_dssp HHTSSCCCTTC-----CC--------------CCCCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred HhccCCCccccccccchh--------------hhhhhHHHHHHHHHHccCChhhCcCHHHHhh
Confidence 11100100000 000000 0112345789999999999999999999986
No 245
>3q60_A ROP5B; pseudokinase, transferase; HET: ATP; 1.72A {Toxoplasma gondii} PDB: 3q5z_A*
Probab=100.00 E-value=2.1e-37 Score=351.20 Aligned_cols=259 Identities=11% Similarity=-0.010 Sum_probs=182.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc---cchHHHHHHHHHHHhc--CCCCcceEEe-------ee
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK---GGSKSFAAECEALRSI--RHRNLIKIVT-------IC 767 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l--~h~niv~l~~-------~~ 767 (1009)
...|.+.+.||+|+||+||+|++..+++.||||+++.... ...+.+.+|+++++.+ +||||++++. ++
T Consensus 61 ~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~hp~iv~~~~~~~~p~d~~ 140 (371)
T 3q60_A 61 ERKLKLVEPLRVGDRSVVFLVRDVERLEDFALKVFTMGAENSRSELERLHEATFAAARLLGESPEEARDRRRLLLPSDAV 140 (371)
T ss_dssp EEEEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEECCSTTHHHHHHHHHHHHHHHHHHHC----------CBCCCCEEE
T ss_pred ceeeeeeeeccCCCCEEEEEEEECCCCceeEEEEEEecccccccHHHHHHHHHHHHHHhcccChhhhhhceeEEeeehhe
Confidence 3468899999999999999999998999999999976443 2245677886555555 6999888552 22
Q ss_pred ecccc------------CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHH------HHHHHHHHHHHHHHhhcC
Q 047768 768 SSIDF------------KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQR------LNIVIDVASAVEYLHHHC 829 (1009)
Q Consensus 768 ~~~~~------------~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~------~~i~~~ia~~l~~LH~~~ 829 (1009)
..... ......++||||++ |+|.+++...... +.+..+ ..++.|++.||+|||++
T Consensus 141 ~~~~~~~~~~~~~~~~~~~~~~~~lv~e~~~-~~L~~~l~~~~~~-----~~~~~~~~~~vk~~i~~qi~~aL~~LH~~- 213 (371)
T 3q60_A 141 AVQSQPPFAQLSPGQDDYAVANYLLLMPAAS-VDLELLFSTLDFV-----YVFRGDEGILALHILTAQLIRLAANLQSK- 213 (371)
T ss_dssp EETTSCSSSBCSCC---CCEEEEEEEECCCS-EEHHHHHHHHHHS-----CCCCHHHHHHHHHHHHHHHHHHHHHHHHT-
T ss_pred ecCCCCCeeeccCCcccceeeeEEEEecCCC-CCHHHHHHHhccc-----cchhhhhhhhhHHHHHHHHHHHHHHHHHC-
Confidence 21100 00145799999998 8999999875322 444555 77889999999999999
Q ss_pred CCCceecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC--CCCCCcccchHHH
Q 047768 830 QPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG--GEASMRGGVYSYG 907 (1009)
Q Consensus 830 ~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwS~G 907 (1009)
+||||||||+|||++.++.+||+|||+|+..... .....+|+.|+|||++.+ ..++.++||||||
T Consensus 214 --~ivHrDikp~NIll~~~~~~kL~DFG~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~~DiwSlG 280 (371)
T 3q60_A 214 --GLVHGHFTPDNLFIMPDGRLMLGDVSALWKVGTR-----------GPASSVPVTYAPREFLNASTATFTHALNAWQLG 280 (371)
T ss_dssp --TEEETTCSGGGEEECTTSCEEECCGGGEEETTCE-----------EEGGGSCGGGCCHHHHTCSEEECCHHHHHHHHH
T ss_pred --CCccCcCCHHHEEECCCCCEEEEecceeeecCCC-----------ccCccCCcCCcChhhccCCCCCcCccccHHHHH
Confidence 9999999999999999999999999999865421 113456799999999987 7789999999999
Q ss_pred HHHHHHHhCCCCCcccccCCccHHHHHHHhccc-hhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCC
Q 047768 908 ILLLEIFTRRRPTESMFNEGLTLHEFAKRALPE-KVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFD 986 (1009)
Q Consensus 908 vvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~-~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~ 986 (1009)
|++|||++|+.||......... .... ........... ..........+.+++.+||+.||++
T Consensus 281 ~il~elltg~~Pf~~~~~~~~~-------~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~li~~~L~~dP~~ 343 (371)
T 3q60_A 281 LSIYRVWCLFLPFGLVTPGIKG-------SWKRPSLRVPGTDSLA----------FGSCTPLPDFVKTLIGRFLNFDRRR 343 (371)
T ss_dssp HHHHHHHHSSCSTTBCCTTCTT-------CCCBCCTTSCCCCSCC----------CTTSSCCCHHHHHHHHHHTCSSTTT
T ss_pred HHHHHHHhCCCCCCCcCccccc-------chhhhhhhhccccccc----------hhhccCCCHHHHHHHHHHcCCChhh
Confidence 9999999999999754322100 0000 00000000000 0000123456789999999999999
Q ss_pred CCCHHHHHH
Q 047768 987 RMEMTDVVV 995 (1009)
Q Consensus 987 Rpt~~evl~ 995 (1009)
|||+.|+++
T Consensus 344 Rpt~~e~l~ 352 (371)
T 3q60_A 344 RLLPLEAME 352 (371)
T ss_dssp CCCHHHHTT
T ss_pred CCCHHHHhc
Confidence 999999975
No 246
>3kvw_A DYRK2, dual specificity tyrosine-phosphorylation-regulat 2; KI-(Y)-phosphorylation REG kinase 2, PSK-H2, kinase, structural genomics consortium; HET: SEP PTR IRB; 2.28A {Homo sapiens} PDB: 3k2l_A* 4azf_A*
Probab=100.00 E-value=9.5e-37 Score=351.63 Aligned_cols=199 Identities=26% Similarity=0.325 Sum_probs=172.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc------CCCCcceEEeeeeccccC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI------RHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l------~h~niv~l~~~~~~~~~~ 773 (1009)
..+|.+.+.||+|+||+||+|.+..+++.||||+++... ...+.+.+|+++++.+ +|+||+++++++...
T Consensus 96 ~~ry~~~~~LG~G~fg~V~~a~~~~~~~~vAvK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~iv~~~~~~~~~--- 171 (429)
T 3kvw_A 96 AYRYEVLKVIGKGSFGQVVKAYDHKVHQHVALKMVRNEK-RFHRQAAEEIRILEHLRKQDKDNTMNVIHMLENFTFR--- 171 (429)
T ss_dssp TTTEEEEEEEEESSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHTTCTTSCSCBCCEEEEEEET---
T ss_pred cCcEEEEEEcccCccEEEEEEEECCCCcEEEEEEECCcc-chHHHHHHHHHHHHHHhhccccCCcCEEEEEeecccC---
Confidence 357999999999999999999999899999999996432 2345677899888887 577999999987653
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc--e
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV--A 851 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~--~ 851 (1009)
...++||||+. ++|.+++...... .+++..++.++.|++.||+|||++ +||||||||+|||++.++. +
T Consensus 172 --~~~~lv~e~~~-~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NILl~~~~~~~v 241 (429)
T 3kvw_A 172 --NHICMTFELLS-MNLYELIKKNKFQ----GFSLPLVRKFAHSILQCLDALHKN---RIIHCDLKPENILLKQQGRSGI 241 (429)
T ss_dssp --TEEEEEECCCC-CBHHHHHHHTTTC----CCCHHHHHHHHHHHHHHHHHHHHH---TEECSCCSGGGEEESSTTSCCE
T ss_pred --CeEEEEEeccC-CCHHHHHHhccCC----CCCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEccCCCcce
Confidence 67899999995 6999999876532 489999999999999999999999 9999999999999999987 9
Q ss_pred EEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 852 HVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 852 kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 242 kL~DFG~a~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~DiwSlG~il~elltG~~pf~~~ 302 (429)
T 3kvw_A 242 KVIDFGSSCYEHQR-----------VYTYIQSRFYRAPEVILGARYGMPIDMWSLGCILAELLTGYPLLPGE 302 (429)
T ss_dssp EECCCTTCEETTCC-----------CCSSCSCGGGCCHHHHHTBCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred EEeecccceecCCc-----------ccccCCCCCccChHHHhCCCCCchHHHHhHHHHHHHHHhCCCCCCCC
Confidence 99999999764422 22357899999999999999999999999999999999999999754
No 247
>1phk_A Phosphorylase kinase; glycogen metabolism, transferase, serine/threonine-protein, ATP-binding, calmodulin-binding; HET: ATP; 2.20A {Oryctolagus cuniculus} SCOP: d.144.1.7 PDB: 1ql6_A* 2phk_A*
Probab=100.00 E-value=2.2e-36 Score=332.27 Aligned_cols=253 Identities=22% Similarity=0.292 Sum_probs=202.0
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc---------cchHHHHHHHHHHHhcC-CCCcceEEeeee
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK---------GGSKSFAAECEALRSIR-HRNLIKIVTICS 768 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---------~~~~~~~~E~~~l~~l~-h~niv~l~~~~~ 768 (1009)
-.++|.+.+.||+|+||.||+|.++.+++.||||+++.... ...+.+.+|+++++++. ||||+++++++.
T Consensus 15 ~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~ 94 (298)
T 1phk_A 15 FYENYEPKEILGRGVSSVVRRCIHKPTCKEYAVKIIDVTGGGSFSAEEVQELREATLKEVDILRKVSGHPNIIQLKDTYE 94 (298)
T ss_dssp CTTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEETTCSTTCCHHHHHHHHHHHHHHHHHHHHHTTCTTBCCEEEEEE
T ss_pred hhhccceeeeecCCCceEEEEEEEcCcCceEEEEEEecccccccCHHHHHHHHHHHHHHHHHHHHhcCCCCEeeeeeeec
Confidence 35689999999999999999999998999999999975431 12356789999999995 999999999975
Q ss_pred ccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC
Q 047768 769 SIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD 848 (1009)
Q Consensus 769 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~ 848 (1009)
. ....++||||+++++|.+++.... .+++.+++.++.|++.||.|||++ +|+||||||+||+++.+
T Consensus 95 ~-----~~~~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dl~p~Nil~~~~ 160 (298)
T 1phk_A 95 T-----NTFFFLVFDLMKKGELFDYLTEKV------TLSEKETRKIMRALLEVICALHKL---NIVHRDLKPENILLDDD 160 (298)
T ss_dssp C-----SSEEEEEEECCTTCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTT
T ss_pred c-----CCeEEEEEeccCCCcHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCcceEEEcCC
Confidence 4 367899999999999999998754 389999999999999999999999 99999999999999999
Q ss_pred CceEEeccccccccCCCCCCCccccCCccccccccccccCccccC------CCCCCCcccchHHHHHHHHHHhCCCCCcc
Q 047768 849 MVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL------GGEASMRGGVYSYGILLLEIFTRRRPTES 922 (1009)
Q Consensus 849 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~------~~~~~~~~DvwS~Gvvl~elltg~~p~~~ 922 (1009)
+.+||+|||+++...... ......||+.|+|||++. ...++.++||||||+++|||++|+.||..
T Consensus 161 ~~~kl~dfg~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~~Di~slG~~l~~l~~g~~p~~~ 231 (298)
T 1phk_A 161 MNIKLTDFGFSCQLDPGE---------KLREVCGTPSYLAPEIIECSMNDNHPGYGKEVDMWSTGVIMYTLLAGSPPFWH 231 (298)
T ss_dssp CCEEECCCTTCEECCTTC---------CBCCCCSCGGGCCHHHHHHHHCTTSCCBCTHHHHHHHHHHHHHHHHSSCSSCC
T ss_pred CcEEEecccchhhcCCCc---------ccccccCCccccCHHHhccccccccccCCcccccHhHHHHHHHHHHCCCCCcC
Confidence 999999999998765421 122356899999999874 45789999999999999999999999964
Q ss_pred cccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 923 MFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... ......... ....... ........++.+++.+|++.||++|||+.|+++
T Consensus 232 ~~~-----~~~~~~~~~--------~~~~~~~--------~~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 283 (298)
T 1phk_A 232 RKQ-----MLMLRMIMS--------GNYQFGS--------PEWDDYSDTVKDLVSRFLVVQPQKRYTAEEALA 283 (298)
T ss_dssp SSH-----HHHHHHHHH--------TCCCCCT--------TTGGGSCHHHHHHHHHHCCSSGGGSCCHHHHTT
T ss_pred ccH-----HHHHHHHhc--------CCcccCc--------ccccccCHHHHHHHHHHccCCcccCCCHHHHHh
Confidence 321 111111000 0000000 000123346889999999999999999999975
No 248
>2b9h_A MAP kinase FUS3, mitogen-activated protein kinase FUS3; transferase; HET: ADP; 1.55A {Saccharomyces cerevisiae} PDB: 2b9i_A* 2b9j_A* 2f49_A 2fa2_A 2b9f_A* 2f9g_A*
Probab=100.00 E-value=1.1e-36 Score=343.43 Aligned_cols=283 Identities=23% Similarity=0.249 Sum_probs=203.9
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+.||+|+||.||+|++..+|+.||||+++.... .....+.+|++++++++||||+++++++....+......
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~ 89 (353)
T 2b9h_A 10 SSDFQLKSLLGEGAYGVVCSATHKPTGEIVAIKKIEPFDKPLFALRTLREIKILKHFKHENIITIFNIQRPDSFENFNEV 89 (353)
T ss_dssp CTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECCCSSHHHHHHHHHHHHHHHHCCCTTBCCEEEECCCSCSTTCCCE
T ss_pred ccceEEeeEEcCCCCeEEEEEEECCCCcEEEEEeecccccchHHHHHHHHHHHHHhCcCCCcCCeeeeecccccCccceE
Confidence 4689999999999999999999998999999999964322 224567899999999999999999999876555556788
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+. |+|.+++.... +++..+..++.|++.||+|||++ +|+||||||+||+++.++.+||+|||+
T Consensus 90 ~lv~e~~~-~~L~~~~~~~~-------~~~~~~~~~~~qi~~~L~~LH~~---~ivH~Dlkp~Nil~~~~~~~kl~Dfg~ 158 (353)
T 2b9h_A 90 YIIQELMQ-TDLHRVISTQM-------LSDDHIQYFIYQTLRAVKVLHGS---NVIHRDLKPSNLLINSNCDLKVCDFGL 158 (353)
T ss_dssp EEEECCCS-EEHHHHHHHCC-------CCHHHHHHHHHHHHHHHHHHHHT---TEECSCCCGGGEEECTTCCEEECCCTT
T ss_pred EEEEeccC-ccHHHHHhhcC-------CCHHHHHHHHHHHHHHHHHHHHC---CeecCCCCHHHeEEcCCCcEEEEeccc
Confidence 99999996 69999987642 89999999999999999999999 999999999999999999999999999
Q ss_pred ccccCCCCCCCccc--cCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 859 AKFLSASPLGNVVE--TPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 859 a~~~~~~~~~~~~~--~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
++............ .........||+.|+|||++.+ ..++.++|||||||++|||++|+.||....... .......
T Consensus 159 a~~~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~-~~~~~~~ 237 (353)
T 2b9h_A 159 ARIIDESAADNSEPTGQQSGMVEFVATRWYRAPEVMLTSAKYSRAMDVWSCGCILAELFLRRPIFPGRDYRH-QLLLIFG 237 (353)
T ss_dssp CEECC----------------CCCCCCGGGCCHHHHHSCCCCCHHHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHH
T ss_pred ccccccccccccCccccccchhhccccccccCCeeeccCCCccchhhHHHHHHHHHHHHhCCCCCCCCCcHH-HHHHHHH
Confidence 98775432111100 0112234578999999998754 778999999999999999999999997532211 0111111
Q ss_pred HhccchhhhccCCCCCCh-hhhh--------hhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPL-EEER--------TNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~-~~~r--------~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
............ ..... ..+. .............++.+++.+|++.||++|||++|+++
T Consensus 238 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (353)
T 2b9h_A 238 IIGTPHSDNDLR-CIESPRAREYIKSLPMYPAAPLEKMFPRVNPKGIDLLQRMLVFDPAKRITAKEALE 305 (353)
T ss_dssp HHCCCCSTTTTT-TCCCHHHHHHHHTSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred HhCCCchhcccc-ccccchhhHHhhcccCCCCcchhhhcccCCHHHHHHHHHhcCcCcccCCCHHHHhc
Confidence 000000000000 00000 0000 00000000123456789999999999999999999986
No 249
>3fme_A Dual specificity mitogen-activated protein kinase; active mutant, structural genomics consortium, SCG, binding, nucleotide-binding, phosphoprotein; HET: STU; 2.26A {Homo sapiens} PDB: 3enm_A
Probab=100.00 E-value=9.6e-37 Score=333.67 Aligned_cols=255 Identities=20% Similarity=0.255 Sum_probs=185.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|++.+.||+|+||+||+|++..+++.||||+++..... ..+.+.++...++.++||||+++++++... ..
T Consensus 6 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~iv~~~~~~~~~-----~~ 80 (290)
T 3fme_A 6 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFRE-----GD 80 (290)
T ss_dssp GGGEEEEEEEEECSSEEEEEEEETTTTEEEEEEEEC---CHHHHHHHHHHHHHHHTTCCCTTBCCEEEEEECS-----SS
T ss_pred HHhhhhHHhcCCCCCeEEEEEEecCCCeEEEEEEeecccCcHHHHHHHHHHHHHHHhCCCCeEEEEeeeeecc-----CC
Confidence 46899999999999999999999989999999999654322 123344555567888999999999997643 67
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||++ |+|.+++...... ...+++..++.++.|++.|++|||+++ +|+||||||+||+++.++.+||+|||
T Consensus 81 ~~lv~e~~~-~~l~~~l~~~~~~--~~~~~~~~~~~i~~qi~~~l~~lH~~~--~i~H~dlkp~Nil~~~~~~~kl~Dfg 155 (290)
T 3fme_A 81 VWICMELMD-TSLDKFYKQVIDK--GQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFG 155 (290)
T ss_dssp EEEEEECCS-EEHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHHHS--CCCCCCCSGGGCEECTTCCEEBCCC-
T ss_pred EEEEEehhc-cchHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeecC
Confidence 899999997 5998887652111 124899999999999999999999853 89999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCcccc----CCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYG----LGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
+++...... ......||+.|+|||++ .+..++.++||||+||++|||++|+.||.............
T Consensus 156 ~~~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~~~~~~~~ 226 (290)
T 3fme_A 156 ISGYLVDDV---------AKDIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQV 226 (290)
T ss_dssp -----------------------CCCCCCSCHHHHSCCTTC--CCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHH
T ss_pred Ccccccccc---------cccccCCCccccChhhcChhhcCcCCCcHHHHHHHHHHHHHHHHCCCCccccCchHHHHHHH
Confidence 998664421 12234689999999995 56678999999999999999999999997432221111111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... .....+ ...+..++.+++.+|++.||++|||+.|+++
T Consensus 227 ~~~------------~~~~~~----------~~~~~~~~~~li~~~l~~~p~~Rpt~~e~l~ 266 (290)
T 3fme_A 227 VEE------------PSPQLP----------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 266 (290)
T ss_dssp HHS------------CCCCCC----------TTTSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred hcc------------CCCCcc----------cccCCHHHHHHHHHHhhcChhhCcCHHHHHh
Confidence 110 000000 0122345789999999999999999999987
No 250
>2i6l_A Mitogen-activated protein kinase 6; MAPK6, ERK3, extracellular signal regulated kinase 3, serine phosphorylation, threonine phosphorylation; 2.25A {Homo sapiens}
Probab=100.00 E-value=4.3e-37 Score=341.63 Aligned_cols=278 Identities=19% Similarity=0.260 Sum_probs=197.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeecc---------
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSI--------- 770 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~--------- 770 (1009)
.++|.+.+.||+|+||.||+|.+..+++.||||++........+.+.+|++++++++||||+++++++...
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~~~~~~~~~~ 89 (320)
T 2i6l_A 10 GSRYMDLKPLGCGGNGLVFSAVDNDCDKRVAIKKIVLTDPQSVKHALREIKIIRRLDHDNIVKVFEILGPSGSQLTDDVG 89 (320)
T ss_dssp TTTEEEEEECC-----CEEEEEETTTTEEEEEEEEECCSHHHHHHHHHHHHHHHTCCCTTBCCEEEEECTTSCBCCC---
T ss_pred CCceeEEEEeccCCCeEEEEEEECCCCeEEEEEEEecCChHHHHHHHHHHHHHHhcCCCCeeEEEEeccccccccccccc
Confidence 35789999999999999999999988999999999765555567889999999999999999999987432
Q ss_pred ccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC-CCC
Q 047768 771 DFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD-HDM 849 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~-~~~ 849 (1009)
........++||||++ |+|.+++... .+++..++.++.|++.||+|||++ +|+||||||+||+++ +++
T Consensus 90 ~~~~~~~~~lv~e~~~-~~L~~~~~~~-------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~ 158 (320)
T 2i6l_A 90 SLTELNSVYIVQEYME-TDLANVLEQG-------PLLEEHARLFMYQLLRGLKYIHSA---NVLHRDLKPANLFINTEDL 158 (320)
T ss_dssp -CCSCSEEEEEEECCS-EEHHHHHTTC-------CCCHHHHHHHHHHHHHHHHHHHHT---TCBCCCCSGGGEEEETTTT
T ss_pred cccccCceeEEeeccC-CCHHHHhhcC-------CccHHHHHHHHHHHHHHHHHHHhC---CEecCCCCHHHEEEcCCCC
Confidence 1234467899999997 6999999753 288999999999999999999999 999999999999997 567
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCc
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGL 928 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~ 928 (1009)
.+||+|||+++....... .........+|..|+|||.+.+ ..++.++|||||||++|||++|+.||.......
T Consensus 159 ~~kl~Dfg~~~~~~~~~~-----~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~- 232 (320)
T 2i6l_A 159 VLKIGDFGLARIMDPHYS-----HKGHLSEGLVTKWYRSPRLLLSPNNYTKAIDMWAAGCIFAEMLTGKTLFAGAHELE- 232 (320)
T ss_dssp EEEECCCTTCBCC-------------CCCGGGSCCTTCCHHHHHCTTCCCHHHHHHHHHHHHHHHHHSSCSSCCSSHHH-
T ss_pred eEEEccCccccccCCCcc-----cccccccccccccccCcHHhcCcccCCchhhhHhHHHHHHHHHhCCCCCCCCCHHH-
Confidence 999999999987643211 1112233567999999998765 678999999999999999999999997543211
Q ss_pred cHHHHHHHhc--c-chhhhccCCCCCChhhhhhh----ccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 929 TLHEFAKRAL--P-EKVMEIVDPSLLPLEEERTN----SRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 929 ~~~~~~~~~~--~-~~~~~~~d~~l~~~~~~r~~----~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.......... . +...++.+. +......... ...........++.+++.+|++.||++|||++|+++
T Consensus 233 ~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 305 (320)
T 2i6l_A 233 QMQLILESIPVVHEEDRQELLSV-IPVYIRNDMTEPHKPLTQLLPGISREAVDFLEQILTFSPMDRLTAEEALS 305 (320)
T ss_dssp HHHHHHHHSCCCCHHHHHHHHTT-SCHHHHHHTTSCCCCHHHHSTTCCHHHHHHHHTTSCSSGGGSCCHHHHHT
T ss_pred HHHHHHHhcCCCchhhhhhhhhc-CcccccccccCCCCChhHhcchhhHHHHHHHHHHcCCCccccCCHHHHhC
Confidence 1111111100 0 001111100 0000000000 000000123456889999999999999999999976
No 251
>3e3p_A Protein kinase, putative glycogen synthase kinase; leishmaniasis, transferase; 2.00A {Leishmania major}
Probab=100.00 E-value=2.9e-36 Score=340.86 Aligned_cols=285 Identities=20% Similarity=0.245 Sum_probs=194.7
Q ss_pred HHHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeecccc-
Q 047768 694 KELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDF- 772 (1009)
Q Consensus 694 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~- 772 (1009)
.+.....++|.+.+.||+|+||+||+|+++.+++.||||++.... .......+|++.++.++||||+++++++.....
T Consensus 16 ~~~~~~~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~~~~l~~l~h~niv~~~~~~~~~~~~ 94 (360)
T 3e3p_A 16 ERSRKEMDRFQVERMAGQGTFGTVQLGKEKSTGMSVAIKKVIQDP-RFRNRELQIMQDLAVLHHPNIVQLQSYFYTLGER 94 (360)
T ss_dssp HHHHHHHTTEEEC----------CEEEEETTTCCEEEEEEEECCT-TCCCHHHHHHHHHHHHCCTTBCCEEEEEEEECSS
T ss_pred hhchhhccceEEEEEEecCCCeEEEEEEECCCCCEEEEEEEecCc-cccHHHHHHHHHHHhcCCCCcccHHHhhhccccc
Confidence 455677789999999999999999999999899999999985433 234567788888999999999999999865322
Q ss_pred -CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHh--hcCCCCceecCCCCCceeeCC-C
Q 047768 773 -KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLH--HHCQPPIVHGDLKPSNVLLDH-D 848 (1009)
Q Consensus 773 -~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH--~~~~~~ivHrdlk~~Nill~~-~ 848 (1009)
......++||||+++ +|.+.+...... ...+++..+..++.|++.|+.||| +. +|+||||||+||+++. +
T Consensus 95 ~~~~~~~~lv~e~~~~-~l~~~~~~~~~~--~~~~~~~~~~~~~~qi~~al~~lH~~~~---~ivH~Dlkp~NIll~~~~ 168 (360)
T 3e3p_A 95 DRRDIYLNVVMEYVPD-TLHRCCRNYYRR--QVAPPPILIKVFLFQLIRSIGCLHLPSV---NVCHRDIKPHNVLVNEAD 168 (360)
T ss_dssp CTTCEEEEEEEECCSC-BHHHHHHHHHTT--TCCCCHHHHHHHHHHHHHHHHHHTSTTT---CCBCSCCCGGGEEEETTT
T ss_pred cccceeEEEEeecccc-cHHHHHHHHhhc--ccCCCHHHHHHHHHHHHHHHHHHhCCCC---CeecCcCCHHHEEEeCCC
Confidence 223347899999976 555544421110 124889999999999999999999 77 9999999999999997 8
Q ss_pred CceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCC-CCCcccchHHHHHHHHHHhCCCCCcccccCC
Q 047768 849 MVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGE-ASMRGGVYSYGILLLEIFTRRRPTESMFNEG 927 (1009)
Q Consensus 849 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~-~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~ 927 (1009)
+.+||+|||+++...... ......||+.|+|||++.+.. ++.++|||||||++|||++|+.||......
T Consensus 169 ~~~kl~Dfg~a~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~ell~g~~pf~~~~~~- 238 (360)
T 3e3p_A 169 GTLKLCDFGSAKKLSPSE---------PNVAYICSRYYRAPELIFGNQHYTTAVDIWSVGCIFAEMMLGEPIFRGDNSA- 238 (360)
T ss_dssp TEEEECCCTTCBCCCTTS---------CCCSTTSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-
T ss_pred CcEEEeeCCCceecCCCC---------CcccccCCcceeCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCcCCCChH-
Confidence 999999999998765431 222456899999999987654 899999999999999999999999753221
Q ss_pred ccHHHHHHHhc--cchhhhccCCCCCChhhhh------hhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 928 LTLHEFAKRAL--PEKVMEIVDPSLLPLEEER------TNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 928 ~~~~~~~~~~~--~~~~~~~~d~~l~~~~~~r------~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
........... +......+++......... ..........+..++.+++.+|++.||.+|||+.|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 314 (360)
T 3e3p_A 239 GQLHEIVRVLGCPSREVLRKLNPSHTDVDLYNSKGIPWSNVFSDHSLKDAKEAYDLLSALLQYLPEERMKPYEALC 314 (360)
T ss_dssp HHHHHHHHHHCCCCHHHHHHHCTTCCCGGGGCCCCCCHHHHTTTCCCTTHHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred HHHHHHHHHcCCCCHHHHHhcccchhhccccccccCCcccccchhhccccHHHHHHHHHHhccCccccCCHHHHhc
Confidence 11112211111 1111111111111100000 00000111124567889999999999999999999986
No 252
>1vzo_A Ribosomal protein S6 kinase alpha 5; protein kinase, transferase, phosphorylation, serine/threonine protein kinase; 1.8A {Homo sapiens} SCOP: d.144.1.7
Probab=100.00 E-value=1.1e-36 Score=342.60 Aligned_cols=255 Identities=23% Similarity=0.320 Sum_probs=200.0
Q ss_pred hccCccCCcccccCCceEEEEEEe---cCCeEEEEEEeeccc----ccchHHHHHHHHHHHhc-CCCCcceEEeeeeccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLH---ENGMLVAVKVINLEQ----KGGSKSFAAECEALRSI-RHRNLIKIVTICSSID 771 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~---~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~ 771 (1009)
.++|.+.+.||+|+||+||+|+.. .+++.||||+++... ....+.+.+|+++++++ +||||+++++++...
T Consensus 53 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~E~~~l~~l~~h~~iv~~~~~~~~~- 131 (355)
T 1vzo_A 53 IENFELLKVLGTGAYGKVFLVRKISGHDTGKLYAMKVLKKATIVQKAKTTEHTRTERQVLEHIRQSPFLVTLHYAFQTE- 131 (355)
T ss_dssp GGGEEEEEEEEETTTEEEEEEEECSSTTTTCEEEEEEESEEEEEEEESSGGGCCCHHHHHHHHHTCTTBCCEEEEEEET-
T ss_pred ccceEEEEEeccCCCEEEEEEEEcccCCCCeEEEEEEEeHHHhhhhhhHHHHHHHHHHHHHHccCCCceeEEEEEEeeC-
Confidence 368999999999999999999984 478999999986432 22345677899999999 699999999987543
Q ss_pred cCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCce
Q 047768 772 FKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVA 851 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~ 851 (1009)
...++||||+++|+|.+++..... +++.+++.++.|++.||.|||++ +|+||||||+||+++.++.+
T Consensus 132 ----~~~~lv~e~~~~~~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---~ivH~Dlkp~NIll~~~~~~ 198 (355)
T 1vzo_A 132 ----TKLHLILDYINGGELFTHLSQRER------FTEHEVQIYVGEIVLALEHLHKL---GIIYRDIKLENILLDSNGHV 198 (355)
T ss_dssp ----TEEEEEECCCCSCBHHHHHHHHSC------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECTTSCE
T ss_pred ----ceEEEEeecCCCCCHHHHHHHcCC------CCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEECCCCcE
Confidence 678999999999999999987643 89999999999999999999999 99999999999999999999
Q ss_pred EEeccccccccCCCCCCCccccCCccccccccccccCccccCC--CCCCCcccchHHHHHHHHHHhCCCCCcccccCCcc
Q 047768 852 HVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG--GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLT 929 (1009)
Q Consensus 852 kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~ 929 (1009)
||+|||+++...... ........||+.|+|||++.+ ..++.++|||||||++|||++|+.||...... ..
T Consensus 199 kl~DfG~a~~~~~~~-------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~DvwslG~il~ell~g~~pf~~~~~~-~~ 270 (355)
T 1vzo_A 199 VLTDFGLSKEFVADE-------TERAYDFCGTIEYMAPDIVRGGDSGHDKAVDWWSLGVLMYELLTGASPFTVDGEK-NS 270 (355)
T ss_dssp EESCSSEEEECCGGG-------GGGGCGGGSCCTTCCHHHHTTCC---CTHHHHHHHHHHHHHHHHSSCTTSCTTSC-CC
T ss_pred EEeeCCCCeecccCC-------CCcccCcccCcCccChhhhcCCCCCCCchhhHHHHHHHHHHHHHCCCCCccCCcc-ch
Confidence 999999998654321 122234679999999999886 34789999999999999999999999743222 12
Q ss_pred HHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-----CHHHHHHH
Q 047768 930 LHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-----EMTDVVVK 996 (1009)
Q Consensus 930 ~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-----t~~evl~~ 996 (1009)
...+....... .+. ........+.+++.+|++.||++|| +++|+++.
T Consensus 271 ~~~~~~~~~~~------~~~--------------~~~~~~~~~~~li~~~L~~dP~~R~~~~~~s~~ell~h 322 (355)
T 1vzo_A 271 QAEISRRILKS------EPP--------------YPQEMSALAKDLIQRLLMKDPKKRLGCGPRDADEIKEH 322 (355)
T ss_dssp HHHHHHHHHHC------CCC--------------CCTTSCHHHHHHHHHHTCSSGGGSTTSSTTTHHHHHTS
T ss_pred HHHHHHHHhcc------CCC--------------CCcccCHHHHHHHHHHhhhCHHHhcCCCCCCHHHHHcC
Confidence 22222111100 000 0012234577999999999999999 89998764
No 253
>1x8b_A WEE1HU, WEE1-like protein kinase; cell cycle, transferase; HET: 824; 1.81A {Homo sapiens} PDB: 3bi6_A* 3biz_A* 3cqe_A* 3cr0_A* 2in6_A* 2io6_A* 2z2w_A*
Probab=100.00 E-value=1.7e-36 Score=331.34 Aligned_cols=247 Identities=18% Similarity=0.255 Sum_probs=196.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~ 776 (1009)
.++|.+.+.||+|+||+||+|++..+++.||||+++.... .....+.+|+..+.++ +||||+++++++... .
T Consensus 10 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~e~~~~~~l~~h~~iv~~~~~~~~~-----~ 84 (289)
T 1x8b_A 10 TTEFHELEKIGSGEFGSVFKCVKRLDGCIYAIKRSKKPLAGSVDEQNALREVYAHAVLGQHSHVVRYFSAWAED-----D 84 (289)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCCTTSHHHHHHHHHHHHHHHSCSCTTBCCEEEEEEET-----T
T ss_pred cchhhhhhhhcCCCceEEEEEEEcCCCceEEEEEecccccccHHHHHHHHHHHHHHHhCCCCCeeeeeeeeecC-----C
Confidence 4689999999999999999999998999999999975432 2346788899999999 999999999997643 6
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC--------
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD-------- 848 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~-------- 848 (1009)
..++||||+++++|.+++...... ...+++.+++.++.|++.||+|||++ +|+||||||+||+++.+
T Consensus 85 ~~~lv~e~~~~~~L~~~l~~~~~~--~~~~~~~~~~~i~~qi~~al~~lH~~---~ivH~Dikp~NIl~~~~~~~~~~~~ 159 (289)
T 1x8b_A 85 HMLIQNEYCNGGSLADAISENYRI--MSYFKEAELKDLLLQVGRGLRYIHSM---SLVHMDIKPSNIFISRTSIPNAASE 159 (289)
T ss_dssp EEEEEEECCTTCBHHHHHHHHHHH--TCCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEC----------
T ss_pred eEEEEEEecCCCcHHHHHHhhccc--ccCCCHHHHHHHHHHHHHHHHHHHhC---CEeecCCCHHHEEEcCCCCCccccc
Confidence 789999999999999999865311 12389999999999999999999999 99999999999999844
Q ss_pred -----------CceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhC
Q 047768 849 -----------MVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTR 916 (1009)
Q Consensus 849 -----------~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg 916 (1009)
..+||+|||.++...... ...||+.|+|||++.+. .++.++|||||||++|||++|
T Consensus 160 ~~~~~~~~~~~~~~kl~Dfg~~~~~~~~~------------~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~~ 227 (289)
T 1x8b_A 160 EGDEDDWASNKVMFKIGDLGHVTRISSPQ------------VEEGDSRFLANEVLQENYTHLPKADIFALALTVVCAAGA 227 (289)
T ss_dssp ----------CCCEEECCCTTCEETTCSC------------CCCCCGGGCCHHHHTTCCTTHHHHHHHHHHHHHHHHTTC
T ss_pred ccccccccCCceEEEEcccccccccCCcc------------ccCCCccccChhHhcCCCCCCchhhHHHHHHHHHHHhcC
Confidence 479999999998764321 23489999999998876 567899999999999999999
Q ss_pred CCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 917 RRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 917 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
..|+.... ..... ........+ ..+..++.+++.+|++.||++|||+.|+++
T Consensus 228 ~~~~~~~~----~~~~~------------~~~~~~~~~-----------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 279 (289)
T 1x8b_A 228 EPLPRNGD----QWHEI------------RQGRLPRIP-----------QVLSQEFTELLKVMIHPDPERRPSAMALVK 279 (289)
T ss_dssp CCCCSSSH----HHHHH------------HTTCCCCCS-----------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCcchh----HHHHH------------HcCCCCCCC-----------cccCHHHHHHHHHHhCCCcccCCCHHHHhh
Confidence 88764211 11111 111110011 112345789999999999999999999975
No 254
>3pfq_A PKC-B, PKC-beta, protein kinase C beta type; phosphorylation, transferase; HET: TPO SEP ANP; 4.00A {Rattus norvegicus} PDB: 1tbn_A 1tbo_A 2e73_A
Probab=100.00 E-value=2.3e-36 Score=366.38 Aligned_cols=245 Identities=21% Similarity=0.257 Sum_probs=200.7
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecc---cccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLE---QKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~---~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~ 774 (1009)
..++|.+.+.||+|+||.||+|+++.+++.||||+++.. .....+.+..|.+++..+ +||+|+++++++. .
T Consensus 339 ~~~~f~~~~~LG~G~fG~V~~~~~~~~~~~vAvK~l~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~l~~~~~-----~ 413 (674)
T 3pfq_A 339 KLTDFNFLMVLGKGSFGKVMLSERKGTDELYAVKILKKDVVIQDDDVECTMVEKRVLALPGKPPFLTQLHSCFQ-----T 413 (674)
T ss_dssp -CTTEEEEEESSBTTTBCEEEEEESSSCCEEEEEEEEHHHHHHTTTTHHHHHHHHHHTCTTCCTTBCCEEEECB-----C
T ss_pred cccceEEEEEEccCCCEEEEEEEECCCCcEEEEEEEeccccccHHHHHHHHHHHHHHHhccCCCeEEEEEEEEE-----e
Confidence 456899999999999999999999999999999999743 233456788899999988 7999999999854 3
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
....++||||+++|+|.++++.... +++..++.++.|++.||+|||++ +||||||||+|||++.++.+||+
T Consensus 414 ~~~~~lV~E~~~gg~L~~~l~~~~~------~~~~~~~~~~~qi~~aL~~LH~~---gIiHrDLKp~NILl~~~g~ikL~ 484 (674)
T 3pfq_A 414 MDRLYFVMEYVNGGDLMYHIQQVGR------FKEPHAVFYAAEIAIGLFFLQSK---GIIYRDLKLDNVMLDSEGHIKIA 484 (674)
T ss_dssp SSEEEEEEECCCSCBHHHHHHHHSS------CCHHHHHHHHHHHHHHHHHHHHT---SEECCCCCSTTEEECSSSCEEEC
T ss_pred CCEEEEEEeCcCCCcHHHHHHhcCC------CCHHHHHHHHHHHHHHHHHHHhC---CeEeccCChhhEEEcCCCcEEEe
Confidence 4788999999999999999987653 89999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+|+...... .......||+.|+|||++.+..++.++|||||||++|||++|+.||.... ..+..
T Consensus 485 DFGla~~~~~~~--------~~~~~~~GT~~Y~APE~l~~~~~~~~~DvwSlGvilyelltG~~Pf~~~~-----~~~~~ 551 (674)
T 3pfq_A 485 DFGMCKENIWDG--------VTTKTFCGTPDYIAPEIIAYQPYGKSVDWWAFGVLLYEMLAGQAPFEGED-----EDELF 551 (674)
T ss_dssp CCTTCEECCCTT--------CCBCCCCSCSSSCCHHHHTCCCBSTHHHHHHHHHHHHHHHHSSCSSCCSS-----HHHHH
T ss_pred ecceeeccccCC--------cccccccCCCcccCHhhhcCCCCCccceEechHHHHHHHHcCCCCCCCCC-----HHHHH
Confidence 999998643221 22335679999999999999999999999999999999999999997432 12222
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEM 990 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~ 990 (1009)
.... ..... .+ .....++.+++.+|++.||++||++
T Consensus 552 ~~i~--------~~~~~-~p-----------~~~s~~~~~li~~lL~~dP~~R~~~ 587 (674)
T 3pfq_A 552 QSIM--------EHNVA-YP-----------KSMSKEAVAICKGLMTKHPGKRLGC 587 (674)
T ss_dssp HHHH--------SSCCC-CC-----------TTSCHHHHHHHHHHSCSSSTTCTTC
T ss_pred HHHH--------hCCCC-CC-----------ccCCHHHHHHHHHHccCCHHHCCCC
Confidence 2111 11110 11 0122457899999999999999998
No 255
>1wak_A Serine/threonine-protein kinase SPRK1; SRPK, transferase, alternative splicing, ATP-binding, chromosome partition, differentiation, mRNA processing; 1.73A {Homo sapiens} PDB: 1wbp_A* 3beg_A* 2x7g_A*
Probab=100.00 E-value=3.3e-36 Score=345.33 Aligned_cols=276 Identities=19% Similarity=0.239 Sum_probs=204.7
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC--------CCCcceEEeeeeccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR--------HRNLIKIVTICSSID 771 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--------h~niv~l~~~~~~~~ 771 (1009)
.++|.+.+.||+|+||+||+|++..+++.||||+++... ...+.+.+|++++++++ |+||+++++++...
T Consensus 36 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~iv~~~~~~~~~- 113 (397)
T 1wak_A 36 NGRYHVIRKLGWGHFSTVWLSWDIQGKKFVAMKVVKSAE-HYTETALDEIRLLKSVRNSDPNDPNREMVVQLLDDFKIS- 113 (397)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHSCTTCGGGGGBCCEEEEEEEE-
T ss_pred CCeEEEEEEeeecCCeeEEEEEecCCCeEEEEEEEecCC-cchHHHHHHHHHHHHHhhcCCCCCCcceeeeeecceeec-
Confidence 367999999999999999999999899999999996432 23467889999999985 78899999987632
Q ss_pred cCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCC--
Q 047768 772 FKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDM-- 849 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~-- 849 (1009)
.......++||||+ ++++.+++..... ..+++..++.++.|++.||+|||+++ +||||||||+|||++.++
T Consensus 114 ~~~~~~~~lv~e~~-~~~l~~~~~~~~~----~~~~~~~~~~i~~qi~~aL~~lH~~~--givHrDikp~NIll~~~~~~ 186 (397)
T 1wak_A 114 GVNGTHICMVFEVL-GHHLLKWIIKSNY----QGLPLPCVKKIIQQVLQGLDYLHTKC--RIIHTDIKPENILLSVNEQY 186 (397)
T ss_dssp ETTEEEEEEEECCC-CCBHHHHHHHTTT----SCCCHHHHHHHHHHHHHHHHHHHHTT--CEECCCCSGGGEEECCCHHH
T ss_pred CCCCceEEEEEecc-CccHHHHHHhccc----CCCCHHHHHHHHHHHHHHHHHHHHhC--CEecCCCCHHHeeEeccchh
Confidence 12346789999999 6677777665432 13899999999999999999999864 799999999999999775
Q ss_pred -----------------------------------------------ceEEeccccccccCCCCCCCccccCCccccccc
Q 047768 850 -----------------------------------------------VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKG 882 (1009)
Q Consensus 850 -----------------------------------------------~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~g 882 (1009)
.+||+|||+++..... .....|
T Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~kl~DfG~a~~~~~~-----------~~~~~g 255 (397)
T 1wak_A 187 IRRLAAEATEWQRSGAPPPSGSAVSTAPATAGNFLVNPLEPKNAEKLKVKIADLGNACWVHKH-----------FTEDIQ 255 (397)
T ss_dssp HHHHHHHHC---------------------CCTTSCCTTSGGGGGGCCEEECCGGGCEETTBC-----------SCSCCS
T ss_pred hhhhhhhhHHHhhcCCCCCCCCccccCCcccccccccccccccccccceEecccccccccccc-----------CccCCC
Confidence 7999999999866432 223468
Q ss_pred cccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHH-----HHHHHh--ccchh-------hhccCC
Q 047768 883 TIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLH-----EFAKRA--LPEKV-------MEIVDP 948 (1009)
Q Consensus 883 t~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~-----~~~~~~--~~~~~-------~~~~d~ 948 (1009)
|+.|+|||++.+..++.++|||||||++|||++|+.||........... ...... .+... .+....
T Consensus 256 t~~y~aPE~~~~~~~~~~~DiwslG~il~elltg~~pf~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~ 335 (397)
T 1wak_A 256 TRQYRSLEVLIGSGYNTPADIWSTACMAFELATGDYLFEPHSGEEYTRDEDHIALIIELLGKVPRKLIVAGKYSKEFFTK 335 (397)
T ss_dssp CGGGCCHHHHHTSCCCTHHHHHHHHHHHHHHHHSSCSCCCCCCSSSCHHHHHHHHHHHHHCSCCHHHHHHCTTGGGTBCT
T ss_pred CCcccCChhhcCCCCCcHHHHHHHHHHHHHHhhCCCCCCCCcccccCchHHHHHHHHHhcCCCChHHhhcccccccccCC
Confidence 9999999999999999999999999999999999999976443322111 111100 11110 000000
Q ss_pred C--CCChh-------hhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 949 S--LLPLE-------EERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 949 ~--l~~~~-------~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
. +.... ............+....+.+++.+|++.||++|||++|+++
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~e~l~ 391 (397)
T 1wak_A 336 KGDLKHITKLKPWGLFEVLVEKYEWSQEEAAGFTDFLLPMLELIPEKRATAAECLR 391 (397)
T ss_dssp TSSBSSCCCCCCCCHHHHHHHTSCCCHHHHHHHHHHHGGGGCSSGGGSCCHHHHHT
T ss_pred ccccccccccCCcchhHhhhhhcccchhhHHHHHHHHHHHhccChhhcCCHHHHhh
Confidence 0 00000 00000111233456678999999999999999999999975
No 256
>2x7f_A TRAF2 and NCK-interacting protein kinase; serine/threonine-protein kinase, phosphoprotein; HET: 824; 2.80A {Homo sapiens}
Probab=100.00 E-value=1.4e-36 Score=338.52 Aligned_cols=262 Identities=21% Similarity=0.294 Sum_probs=199.6
Q ss_pred HHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccC
Q 047768 695 ELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 695 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~ 773 (1009)
++....++|.+.+.||+|+||.||+|++..+++.||||++.... ...+.+.+|+++++++ +||||+++++++......
T Consensus 18 ~l~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~h~~i~~~~~~~~~~~~~ 96 (326)
T 2x7f_A 18 ALRDPAGIFELVELVGNGTYGQVYKGRHVKTGQLAAIKVMDVTG-DEEEEIKQEINMLKKYSHHRNIATYYGAFIKKNPP 96 (326)
T ss_dssp CCCCCTTTEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEECCS-STTHHHHHHHHHHHHHCCSTTBCCEEEEEEECC--
T ss_pred hccCCCCcEEEEEEeccCCCEEEEEEEECCCCCeEEEEEEecCc-ccHHHHHHHHHHHHhccCCCCeeeeeeEEeeccCc
Confidence 33445678999999999999999999998899999999996543 3457889999999999 899999999998653211
Q ss_pred -CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceE
Q 047768 774 -GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAH 852 (1009)
Q Consensus 774 -~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~k 852 (1009)
.....++||||+++|+|.+++..... ..+++..++.++.|++.||.|||+. +|+||||||+||+++.++.+|
T Consensus 97 ~~~~~~~lv~e~~~~~~L~~~l~~~~~----~~~~~~~~~~i~~qi~~~l~~lH~~---~ivH~dlkp~NIl~~~~~~~k 169 (326)
T 2x7f_A 97 GMDDQLWLVMEFCGAGSVTDLIKNTKG----NTLKEEWIAYICREILRGLSHLHQH---KVIHRDIKGQNVLLTENAEVK 169 (326)
T ss_dssp CCCCEEEEEEECCTTEEHHHHHHHSGG----GCCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEECTTCCEE
T ss_pred cccceEEEEEEcCCCCcHHHHHHhccc----CCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCcHHHEEEcCCCCEE
Confidence 13678999999999999999987532 2489999999999999999999999 999999999999999999999
Q ss_pred EeccccccccCCCCCCCccccCCccccccccccccCccccC-----CCCCCCcccchHHHHHHHHHHhCCCCCcccccCC
Q 047768 853 VSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL-----GGEASMRGGVYSYGILLLEIFTRRRPTESMFNEG 927 (1009)
Q Consensus 853 l~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~ 927 (1009)
|+|||++....... .......||+.|+|||++. +..++.++|||||||++|||++|+.||......
T Consensus 170 l~Dfg~~~~~~~~~--------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~~~- 240 (326)
T 2x7f_A 170 LVDFGVSAQLDRTV--------GRRNTFIGTPYWMAPEVIACDENPDATYDFKSDLWSLGITAIEMAEGAPPLCDMHPM- 240 (326)
T ss_dssp ECCCTTTC---------------------CCGGGCCHHHHC--------CCTTHHHHHHHHHHHHHHHSSCTTTTSCHH-
T ss_pred EeeCcCceecCcCc--------cccccccCCccccChhhhccccccCcCCCccchHHHHHHHHHHHHhCCCCCCCCcHH-
Confidence 99999998654321 1122356899999999987 567899999999999999999999999643211
Q ss_pred ccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 928 LTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
......... ..+.. ....+...+.+++.+|++.||.+||+++|+++
T Consensus 241 ----~~~~~~~~~-----~~~~~-------------~~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~ 286 (326)
T 2x7f_A 241 ----RALFLIPRN-----PAPRL-------------KSKKWSKKFQSFIESCLVKNHSQRPATEQLMK 286 (326)
T ss_dssp ----HHHHHHHHS-----CCCCC-------------SCSCSCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred ----HHHHHhhcC-----ccccC-------------CccccCHHHHHHHHHHhccChhhCCCHHHHhh
Confidence 111000000 00000 00112345789999999999999999999987
No 257
>1j1b_A Glycogen synthase kinase-3 beta; complex, TAU, AMPPNP, transferase; HET: ANP; 1.80A {Homo sapiens} SCOP: d.144.1.7 PDB: 1i09_A* 1j1c_A* 2jld_A* 3m1s_A* 3pup_A* 3du8_A* 1pyx_A* 1q41_A* 1q3w_A* 1q3d_A* 1q4l_A* 3q3b_A* 1q5k_A* 3i4b_A* 3l1s_A* 1r0e_A* 3zrk_A* 3zrl_A* 3zrm_A* 4dit_A* ...
Probab=100.00 E-value=1.4e-36 Score=349.55 Aligned_cols=274 Identities=23% Similarity=0.311 Sum_probs=196.8
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeecccc-CCCceEE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDF-KGVDFKA 779 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~~~~~~~ 779 (1009)
.+|.+.+.||+|+||+||+|+++.+|+.||||++.... ....+|++++++++||||+++++++..... ......+
T Consensus 54 ~~y~~~~~lG~G~fg~Vy~~~~~~~~~~vaiK~~~~~~----~~~~~E~~il~~l~hpniv~l~~~~~~~~~~~~~~~~~ 129 (420)
T 1j1b_A 54 VSYTDTKVIGNGSFGVVYQAKLCDSGELVAIKKVLQDK----RFKNRELQIMRKLDHCNIVRLRYFFYSSGEKKDEVYLN 129 (420)
T ss_dssp EEEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEEETTTTEEEEE
T ss_pred ceEEeeeEEeeCCCEEEEEEEECCCCcEEEEEEecccc----hhHHHHHHHHHHcCCCCccceeeEEeccCCCCcceeEE
Confidence 46888999999999999999999899999999985432 233479999999999999999998754321 2234567
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC-CceEEecccc
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD-MVAHVSDFGL 858 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~-~~~kl~DfGl 858 (1009)
+||||+++ ++.+.+...... ...+++..++.++.|+++||+|||++ +|+||||||+|||++.+ +.+||+|||+
T Consensus 130 lv~e~~~~-~l~~~~~~~~~~--~~~l~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~NILl~~~~~~~kl~DFG~ 203 (420)
T 1j1b_A 130 LVLDYVPE-TVYRVARHYSRA--KQTLPVIYVKLYMYQLFRSLAYIHSF---GICHRDIKPQNLLLDPDTAVLKLCDFGS 203 (420)
T ss_dssp EEEECCCE-EHHHHHHHHHHT--TCCCCHHHHHHHHHHHHHHHHHHHTT---TEECSCCSGGGEEEETTTTEEEECCCTT
T ss_pred eehhcccc-cHHHHHHHHhhc--cCCCCHHHHHHHHHHHHHHHHHHHHC---CccccCCChhhEEEeCCCCeEEeccchh
Confidence 99999975 676666532110 12489999999999999999999999 99999999999999965 6789999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
++...... ......||+.|+|||++.+. .++.++|||||||++|||++|+.||...... ..+.++....
T Consensus 204 a~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~G~~pf~~~~~~-~~l~~i~~~l 273 (420)
T 1j1b_A 204 AKQLVRGE---------PNVSYICSRYYRAPELIFGATDYTSSIDVWSAGCVLAELLLGQPIFPGDSGV-DQLVEIIKVL 273 (420)
T ss_dssp CEECCTTC---------CCCSCCSCTTSCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHHH
T ss_pred hhhcccCC---------CceeeeeCCCcCCHHHHcCCCCCCchhhhHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHHh
Confidence 98764321 12235789999999998765 7899999999999999999999999753221 1222222211
Q ss_pred cc---chhhhccCCCCCCh--hhhhh-hccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 938 LP---EKVMEIVDPSLLPL--EEERT-NSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 938 ~~---~~~~~~~d~~l~~~--~~~r~-~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.. +.+... .+..... +.... ............++.+++.+|++.||++|||+.|+++
T Consensus 274 g~p~~~~~~~~-~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~Li~~~L~~dP~~R~t~~e~l~ 336 (420)
T 1j1b_A 274 GTPTREQIREM-NPNYTEFKFPQIKAHPWTKVFRPRTPPEAIALCSRLLEYTPTARLTPLEACA 336 (420)
T ss_dssp CSCCHHHHHHH-CSCCCCCCCCCCCCCCHHHHSCTTSCHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred CCCCHHHHHhh-ChhhhhhccCccCCCCHHHhcCCCCCHHHHHHHHHhccCChhHCCCHHHHhC
Confidence 11 111111 1111000 00000 0000001122356789999999999999999999975
No 258
>3an0_A Dual specificity mitogen-activated protein kinase; auto inhibition state, activation helix, serine/threonine-PR kinase; HET: ANK; 2.60A {Homo sapiens} PDB: 3vn9_A*
Probab=100.00 E-value=1.3e-36 Score=340.63 Aligned_cols=255 Identities=21% Similarity=0.279 Sum_probs=195.4
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc-chHHHHHHHHH-HHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG-GSKSFAAECEA-LRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~-~~~~~~~E~~~-l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|++..+|+.||||+++..... ....+..|+.+ ++.++||||+++++++... ..
T Consensus 50 ~~~~~~~~~lG~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~e~~~~~~~~~h~~iv~~~~~~~~~-----~~ 124 (340)
T 3an0_A 50 ADDLEPIMELGRGAYGVVEKMRHVPSGQIMAVKRIRATVNSQEQKRLLMDLDISMRTVDCPFTVTFYGALFRE-----GD 124 (340)
T ss_dssp SSCEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCCCCHHHHHHHHHHHHHHTTCCCTTTCCEEEEEECS-----SC
T ss_pred hhheeEeeEecccCCEEEEEEEEcCCCCEEEEEEeccccCcHHHHHHHHHHHHHHhhcCCCcEEEEeeEEEeC-----Cc
Confidence 46788899999999999999999889999999999654322 23455556665 6778999999999997643 67
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+++ +|.+++...... ...+++..++.++.|++.||+|||++. +|+||||||+||+++.++.+||+|||
T Consensus 125 ~~lv~e~~~~-~L~~~l~~~~~~--~~~l~~~~~~~i~~qi~~~l~~lH~~~--~ivH~Dlkp~NIl~~~~~~~kl~Dfg 199 (340)
T 3an0_A 125 VWICMELMDT-SLDKFYKQVIDK--GQTIPEDILGKIAVSIVKALEHLHSKL--SVIHRDVKPSNVLINALGQVKMCDFG 199 (340)
T ss_dssp EEEEECCCSE-EHHHHHHHHHHT--SCCCCHHHHHHHHHHHHHHHHHHHHHT--CCCCCSCCSTTEEECSTTCEEECCCS
T ss_pred EEEEHHHhhC-cHHHHHHHHHhc--CCCCCHHHHHHHHHHHHHHHHHHhhcC--CeecCCCCHHHEEECCCCCEEEeeCC
Confidence 8999999975 999988752110 124899999999999999999999743 89999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccC----CCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL----GGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~----~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
+++..... .......||+.|+|||++. ...++.++|||||||++|||++|+.||.............
T Consensus 200 ~~~~~~~~---------~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~el~tg~~p~~~~~~~~~~~~~~ 270 (340)
T 3an0_A 200 ISGYLVDS---------VAKTIDAGCKPYMAPERINPELNQKGYSVKSDIWSLGITMIELAILRFPYDSWGTPFQQLKQV 270 (340)
T ss_dssp HHHHHSCH---------HHHHHSSCCCCCCCHHHHSCCTTCCSCCHHHHHHHHHHHHHHHHHTSCSSCCCSCHHHHHHHH
T ss_pred Cceecccc---------cccccCCCCccccCccccccccccCCCCchhhHHHHHHHHHHHHHCCCCCccccchHHHHHHH
Confidence 99866431 1122346899999999964 3478999999999999999999999997432211111111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.. ......+ ...+..++.+++.+||+.||++|||+.|+++
T Consensus 271 ~~------------~~~~~~~----------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 310 (340)
T 3an0_A 271 VE------------EPSPQLP----------ADKFSAEFVDFTSQCLKKNSKERPTYPELMQ 310 (340)
T ss_dssp HH------------SCCCCCC----------GGGSCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred hc------------CCCCCCC----------cccCCHHHHHHHHHHccCCcccCcCHHHHhc
Confidence 10 0000000 0123346889999999999999999999987
No 259
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=2.2e-36 Score=345.57 Aligned_cols=350 Identities=15% Similarity=0.122 Sum_probs=207.4
Q ss_pred CCCCccCCCCCCCCCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCcccccccc
Q 047768 45 TSSWNRSACVNLCQHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLV 124 (1009)
Q Consensus 45 ~~sW~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~ 124 (1009)
+++|... .+||+.|.+..|.....+ +............-..++++++|++++|.++...+..|.++++|++|+
T Consensus 3 ~~~~~~~--~~C~~~~~~~~c~~~~~~-----i~~~~~~~~~~~~~~~l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~ 75 (390)
T 3o6n_A 3 VKPRQPE--YKCIDSNLQYDCVFYDVH-----IDMQTQDVYFGFEDITLNNQKIVTFKNSTMRKLPAALLDSFRQVELLN 75 (390)
T ss_dssp ----CCE--ECBCC------EEEESCE-----ECSSCCCCEESCSSGGGCCCSEEEEESCEESEECTHHHHHCCCCSEEE
T ss_pred cCCCCCc--cceehhhhhhccceeeee-----eecccccccccccccccCCceEEEecCCchhhCChhHhcccccCcEEE
Confidence 5789765 356766666666432212 222222222223334578999999999999844444579999999999
Q ss_pred ccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcc
Q 047768 125 LANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRL 204 (1009)
Q Consensus 125 Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l 204 (1009)
|++|.+++..|..|+++++|++|++++|.+.+..|..+ ..+++|++|+|++|+++...+..|+++++|++|++++|++
T Consensus 76 L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l 153 (390)
T 3o6n_A 76 LNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNL 153 (390)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHh--cCCCCCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCcc
Confidence 99999998777889988888888888877765444433 4456666666666666643333456666666666666666
Q ss_pred cCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCC
Q 047768 205 WGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDS 284 (1009)
Q Consensus 205 ~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~ 284 (1009)
.+..|..|..+++|++|++++|++++ ++. ..+++|+.|++++|.+++
T Consensus 154 ~~~~~~~~~~l~~L~~L~l~~n~l~~-------------------------~~~---~~l~~L~~L~l~~n~l~~----- 200 (390)
T 3o6n_A 154 ERIEDDTFQATTSLQNLQLSSNRLTH-------------------------VDL---SLIPSLFHANVSYNLLST----- 200 (390)
T ss_dssp CBCCTTTTSSCTTCCEEECCSSCCSB-------------------------CCG---GGCTTCSEEECCSSCCSE-----
T ss_pred CccChhhccCCCCCCEEECCCCcCCc-------------------------ccc---ccccccceeecccccccc-----
Confidence 55555556666666666666665552 221 124556666666665553
Q ss_pred cCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhh
Q 047768 285 FSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIA 364 (1009)
Q Consensus 285 ~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~ 364 (1009)
+...++|++|++++|++....... . ++|+.|++++|.+++. ..+.
T Consensus 201 ~~~~~~L~~L~l~~n~l~~~~~~~---~------------------------------~~L~~L~l~~n~l~~~--~~l~ 245 (390)
T 3o6n_A 201 LAIPIAVEELDASHNSINVVRGPV---N------------------------------VELTILKLQHNNLTDT--AWLL 245 (390)
T ss_dssp EECCSSCSEEECCSSCCCEEECCC---C------------------------------SSCCEEECCSSCCCCC--GGGG
T ss_pred cCCCCcceEEECCCCeeeeccccc---c------------------------------ccccEEECCCCCCccc--HHHc
Confidence 222346667777777666543221 1 3444555555555432 2333
Q ss_pred hhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCccccccccccc
Q 047768 365 NLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTY 444 (1009)
Q Consensus 365 ~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 444 (1009)
.+ +.|++|+|++|.+++..|..|.++++|+.|+|++|++++ +|..+..+++|++|+|++|+++ .+|..+..+++|++
T Consensus 246 ~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~ 322 (390)
T 3o6n_A 246 NY-PGLVEVDLSYNELEKIMYHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLEN 322 (390)
T ss_dssp GC-TTCSEEECCSSCCCEEESGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSE
T ss_pred CC-CCccEEECCCCcCCCcChhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCE
Confidence 33 345555555555555556666666777777777777763 4555566677777777777776 45556666777777
Q ss_pred ccccCcccccccCCCCCCCCCccccccCCCCcc
Q 047768 445 LSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLT 477 (1009)
Q Consensus 445 L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 477 (1009)
|++++|++++. | +..+++|+.|++++|+++
T Consensus 323 L~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~ 352 (390)
T 3o6n_A 323 LYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWD 352 (390)
T ss_dssp EECCSSCCCCC-C--CCTTCCCSEEECCSSCEE
T ss_pred EECCCCcccee-C--chhhccCCEEEcCCCCcc
Confidence 77777777632 3 556666666666666665
No 260
>2vx3_A Dual specificity tyrosine-phosphorylation- regula kinase 1A; serine/threonine-protein kinase, minibrain homolog, nucleotide-binding, transferase; HET: PTR D15 P6G; 2.40A {Homo sapiens} PDB: 2wo6_A* 3anq_A* 3anr_A*
Probab=100.00 E-value=4.9e-36 Score=341.30 Aligned_cols=203 Identities=24% Similarity=0.295 Sum_probs=170.7
Q ss_pred HHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-CC-----CcceEEeeeeccc
Q 047768 698 KATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HR-----NLIKIVTICSSID 771 (1009)
Q Consensus 698 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~-----niv~l~~~~~~~~ 771 (1009)
...++|.+.+.||+|+||+||+|.++.+++.||||+++... .....+.+|+++++.++ |+ +++++++++...
T Consensus 51 ~~~~~y~~~~~lG~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~iv~~~~~~~~~- 128 (382)
T 2vx3_A 51 KWMDRYEIDSLIGKGSFGQVVKAYDRVEQEWVAIKIIKNKK-AFLNQAQIEVRLLELMNKHDTEMKYYIVHLKRHFMFR- 128 (382)
T ss_dssp EETTTEEEEEEEEEETTEEEEEEEETTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHCSSGGGGGBCCEEEEEEET-
T ss_pred EeeeeEEEEEEEeecCCEEEEEEEEcCCCcEEEEEEEeccH-HHHHHHHHHHHHHHHHHhcccccceeEEEeeeeeccC-
Confidence 34578999999999999999999999899999999996332 23456778999998885 55 489999887643
Q ss_pred cCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC--CCC
Q 047768 772 FKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD--HDM 849 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~--~~~ 849 (1009)
...++||||++ |+|.+++...... .+++..+..++.|++.||.|||++ ..+||||||||+|||++ .++
T Consensus 129 ----~~~~lv~e~~~-~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~al~~lH~~-~~~ivHrDlkp~NIll~~~~~~ 198 (382)
T 2vx3_A 129 ----NHLCLVFEMLS-YNLYDLLRNTNFR----GVSLNLTRKFAQQMCTALLFLATP-ELSIIHCDLKPENILLCNPKRS 198 (382)
T ss_dssp ----TEEEEEEECCC-CBHHHHHHHTTTS----CCCHHHHHHHHHHHHHHHHHHTST-TTCEECCCCSGGGEEESSTTSC
T ss_pred ----CceEEEEecCC-CCHHHHHhhcCcC----CCCHHHHHHHHHHHHHHHHHhccC-CCCEEcCCCCcccEEEecCCCC
Confidence 67899999995 5999999876422 389999999999999999999952 22899999999999995 478
Q ss_pred ceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 850 VAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 850 ~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||...
T Consensus 199 ~~kL~DFG~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~elltg~~pf~~~ 261 (382)
T 2vx3_A 199 AIKIVDFGSSCQLGQR-----------IYQYIQSRFYRSPEVLLGMPYDLAIDMWSLGCILVEMHTGEPLFSGA 261 (382)
T ss_dssp CEEECCCTTCEETTCC-----------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHHHHSSCSSCCS
T ss_pred cEEEEeccCceecccc-----------cccccCCccccChHHHcCCCCCcHHHHHHHHHHHHHHHhCCCCCCCC
Confidence 8999999999876432 12356899999999999999999999999999999999999999753
No 261
>2j0j_A Focal adhesion kinase 1; cell migration, FERM, transferase, integrin signaling; HET: 4ST; 2.80A {Gallus gallus} PDB: 2j0k_A*
Probab=100.00 E-value=2.5e-36 Score=364.91 Aligned_cols=261 Identities=22% Similarity=0.352 Sum_probs=205.7
Q ss_pred HhccCccCCcccccCCceEEEEEEec---CCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHE---NGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~---~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
..++|.+.+.||+|+||.||+|.+.. .+..||||+++.... ...+.+.+|+.++++++||||+++++++..
T Consensus 388 ~~~~y~i~~~LG~G~fG~Vy~a~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~HpnIv~l~~~~~~----- 462 (656)
T 2j0j_A 388 QRERIELGRCIGEGQFGDVHQGIYMSPENPAMAVAIKTCKNCTSDSVREKFLQEALTMRQFDHPHIVKLIGVITE----- 462 (656)
T ss_dssp CGGGEEEEEEEECCSSCCEEEEEECCSSSCCEEEEEEECSSTTCHHHHHHHHHHHHHHHHCCCTTBCCEEEEECS-----
T ss_pred ccccEEEeeEEeeCCCEEEEEEEEecCCCccEEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCeEEEEEec-----
Confidence 35678999999999999999999864 356899999864322 223678999999999999999999998743
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
...++||||+++|+|.++++.... .+++..++.++.|++.||+|||++ +|+||||||+||+++.++.+||+
T Consensus 463 -~~~~lv~E~~~~g~L~~~l~~~~~-----~l~~~~~~~i~~qi~~aL~~LH~~---givHrDikp~NILl~~~~~vkL~ 533 (656)
T 2j0j_A 463 -NPVWIIMELCTLGELRSFLQVRKF-----SLDLASLILYAYQLSTALAYLESK---RFVHRDIAARNVLVSSNDCVKLG 533 (656)
T ss_dssp -SSCEEEEECCTTCBHHHHHHHTTT-----TCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCSGGGEEEEETTEEEEC
T ss_pred -CceEEEEEcCCCCcHHHHHHhccC-----CCCHHHHHHHHHHHHHHHHHHHhC---CccccccchHhEEEeCCCCEEEE
Confidence 457899999999999999986543 389999999999999999999999 99999999999999999999999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCccHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~~~~~ 933 (1009)
|||+++....... .......+|+.|+|||++.+..++.++|||||||++|||++ |..||...... ..
T Consensus 534 DFG~a~~~~~~~~-------~~~~~~~~t~~y~aPE~~~~~~~~~~~DiwSlG~il~ellt~g~~Pf~~~~~~-----~~ 601 (656)
T 2j0j_A 534 DFGLSRYMEDSTY-------YKASKGKLPIKWMAPESINFRRFTSASDVWMFGVCMWEILMHGVKPFQGVKNN-----DV 601 (656)
T ss_dssp CCCCCCSCCC-----------------CCGGGCCHHHHHHCCCCHHHHHHHHHHHHHHHHTTSCCTTTTCCHH-----HH
T ss_pred ecCCCeecCCCcc-------eeccCCCCCcceeCHHHhcCCCCCchhhHHHHHHHHHHHHHcCCCCCCCCCHH-----HH
Confidence 9999987654321 11223457889999999999999999999999999999997 99998743221 11
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhh
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNF 1004 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~ 1004 (1009)
.... ........ +..++..+.+++.+||+.||++|||+.|+++.|+.+.++-
T Consensus 602 ~~~i--------~~~~~~~~-----------~~~~~~~l~~li~~~l~~dP~~RPs~~el~~~L~~il~~~ 653 (656)
T 2j0j_A 602 IGRI--------ENGERLPM-----------PPNCPPTLYSLMTKCWAYDPSRRPRFTELKAQLSTILEEE 653 (656)
T ss_dssp HHHH--------HHTCCCCC-----------CTTCCHHHHHHHHHHTCSSGGGSCCHHHHHHHHHHHHHHH
T ss_pred HHHH--------HcCCCCCC-----------CccccHHHHHHHHHHcCCChhHCcCHHHHHHHHHHHHHHh
Confidence 1110 00000000 1123456889999999999999999999999999987654
No 262
>2wtk_C Serine/threonine-protein kinase 11; transferase-metal-binding protein complex, transferase metal protein complex, nucleus; HET: ANP; 2.65A {Homo sapiens}
Probab=100.00 E-value=5e-36 Score=330.58 Aligned_cols=255 Identities=22% Similarity=0.339 Sum_probs=199.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc----ccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ----KGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~----~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
.++|.+.+.||+|+||.||+|.+..+++.||||+++... ....+.+.+|++++++++||||+++++++.. ...
T Consensus 4 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~~avK~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~---~~~ 80 (305)
T 2wtk_C 4 IGKYLMGDLLGEGSYGKVKEVLDSETLCRRAVKILKKKKLRRIPNGEANVKKEIQLLRRLRHKNVIQLVDVLYN---EEK 80 (305)
T ss_dssp -CCBCCCCEEEECSSCEEEEEEBTTTCCEEEEEEECHHHHHHSTTHHHHHHHHHHHHTTCCCTTBCCEEEEEEC---C--
T ss_pred ccceeEeeEEecCCCeEEEEEEECCCCcEEEEEEeccccccccchhHHHHHHHHHHHHhcCCCCeeEEEEEEEc---CCC
Confidence 468999999999999999999998899999999996542 2235678999999999999999999998743 233
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||++++ +.+++...... .+++.+++.++.|++.||.|||++ +|+||||||+||+++.++.+||+|
T Consensus 81 ~~~~lv~e~~~~~-l~~~~~~~~~~----~~~~~~~~~~~~qi~~al~~LH~~---~i~H~dlkp~NIl~~~~~~~kl~d 152 (305)
T 2wtk_C 81 QKMYMVMEYCVCG-MQEMLDSVPEK----RFPVCQAHGYFCQLIDGLEYLHSQ---GIVHKDIKPGNLLLTTGGTLKISA 152 (305)
T ss_dssp -CEEEEEECCSEE-HHHHHHHSTTC----SCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEECTTCCEEECC
T ss_pred CeEEEEehhccCC-HHHHHHhCccc----ccCHHHHHHHHHHHHHHHHHHHHC---CeeecCCCcccEEEcCCCcEEeec
Confidence 5789999999876 87877764322 489999999999999999999999 999999999999999999999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCC--CCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGE--ASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~--~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
||+++........ .......||+.|+|||++.+.. ++.++||||||+++|||++|+.||.... ....
T Consensus 153 fg~~~~~~~~~~~------~~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l~~g~~p~~~~~-----~~~~ 221 (305)
T 2wtk_C 153 LGVAEALHPFAAD------DTCRTSQGSPAFQPPEIANGLDTFSGFKVDIWSAGVTLYNITTGLYPFEGDN-----IYKL 221 (305)
T ss_dssp CTTCEECCTTCSS------CEECCCCSCGGGCCHHHHTCCSCEESHHHHHHHHHHHHHHHHHSSCSCCCSS-----HHHH
T ss_pred cccccccCccccc------cccccCCCCCCCcChhhccCcccCCcchhhHHHHHHHHHHHHhCCCCCCCch-----HHHH
Confidence 9999876542211 1223456899999999987654 3789999999999999999999997422 1111
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
....... .. .. ...+...+.+++.+|++.||++|||+.|+++.
T Consensus 222 ~~~i~~~--------~~-~~-----------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~~ 264 (305)
T 2wtk_C 222 FENIGKG--------SY-AI-----------PGDCGPPLSDLLKGMLEYEPAKRFSIRQIRQH 264 (305)
T ss_dssp HHHHHHC--------CC-CC-----------CSSSCHHHHHHHHHHTCSSTTTSCCHHHHHHS
T ss_pred HHHHhcC--------CC-CC-----------CCccCHHHHHHHHHHccCChhhCCCHHHHhcC
Confidence 1111000 00 00 01223457799999999999999999999864
No 263
>4exu_A Mitogen-activated protein kinase 13; P38 kinase, transferase; 1.70A {Homo sapiens} PDB: 4eyj_A* 4eym_A* 3coi_A
Probab=100.00 E-value=3.4e-36 Score=341.00 Aligned_cols=272 Identities=19% Similarity=0.219 Sum_probs=196.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeecccc-CCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDF-KGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~~~~ 776 (1009)
.++|.+.+.||+|+||+||+|.++.+|+.||||+++..... ..+.+.+|++++++++||||+++++++..... ....
T Consensus 41 ~~~y~~~~~lG~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~niv~~~~~~~~~~~~~~~~ 120 (371)
T 4exu_A 41 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 120 (371)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSSTTCC
T ss_pred cccEEEEeEEecCCCeEEEEEEECCCCCEEEEEEecccccchhHHHHHHHHHHHHHhcCCCCchhhhhheeccCCcccce
Confidence 35888999999999999999999999999999999654322 24678899999999999999999999865321 1122
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||+. ++|.+++.. .+++.++..++.|++.||+|||+. +|+||||||+||+++.++.+||+||
T Consensus 121 ~~~lv~e~~~-~~l~~~~~~--------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~Dikp~NIll~~~~~~kL~Df 188 (371)
T 4exu_A 121 DFYLVMPFMQ-TDLQKIMGM--------EFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDF 188 (371)
T ss_dssp CCEEEEECCC-EEHHHHTTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTCCEEECST
T ss_pred eEEEEEcccc-ccHHHHhhc--------CCCHHHHHHHHHHHHHHHHHHHHC---CCcCCCcCHHHeEECCCCCEEEEec
Confidence 3489999996 689888743 289999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||......+ .......
T Consensus 189 g~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~DiwslG~il~el~~g~~pf~~~~~~~-~~~~i~~ 256 (371)
T 4exu_A 189 GLARHADAE-----------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILK 256 (371)
T ss_dssp TCC-------------------CTTCCCTTSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSCCCSSHHH-HHHHHHH
T ss_pred CcccccccC-----------cCCcccCccccCHHHhcCCCCCCcHHhHHHHHHHHHHHHhCCCCCCCCChHH-HHHHHHH
Confidence 999855421 223568999999999887 688999999999999999999999997532211 1111111
Q ss_pred Hhc--cchhhhccCCCCCChhhhhh-hcc----ccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RAL--PEKVMEIVDPSLLPLEEERT-NSR----RVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~--~~~~~~~~d~~l~~~~~~r~-~~~----~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... +......+............ ... ......+...+.+++.+|++.||++|||++|+++
T Consensus 257 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 323 (371)
T 4exu_A 257 VTGVPGTEFVQKLNDKAAKSYIQSLPQTPRKDFTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 323 (371)
T ss_dssp HHCCCCHHHHTTCSCHHHHHHHHHSCCCCCCCHHHHSTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HhCCCcHHHHHHhhhhhhhhhhhccCCCcchhHHHhccccChHHHHHHHHHCCCChhhcCCHHHHhc
Confidence 110 00011000000000000000 000 0000122456889999999999999999999975
No 264
>2pml_X PFPK7, Ser/Thr protein kinase; phosphorylati transferase, transferase; HET: ANP; 2.60A {Plasmodium falciparum} PDB: 2pmn_X* 2pmo_X*
Probab=100.00 E-value=3.2e-36 Score=338.78 Aligned_cols=265 Identities=21% Similarity=0.315 Sum_probs=201.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccch-----------------HHHHHHHHHHHhcCCCCcce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGS-----------------KSFAAECEALRSIRHRNLIK 762 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~-----------------~~~~~E~~~l~~l~h~niv~ 762 (1009)
.++|.+.+.||+|+||.||+|.+ +++.||||++........ +.+.+|++++++++||||++
T Consensus 30 ~~~y~~~~~lg~G~~g~V~~~~~--~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~h~~i~~ 107 (348)
T 2pml_X 30 INDYRIIRTLNQGKFNKIILCEK--DNKFYALKKYEKSLLEKKRDFTKSNNDKISIKSKYDDFKNELQIITDIKNEYCLT 107 (348)
T ss_dssp ETTEEEEEEEECCSSCCEEEEEE--TTEEEEEEEEEHHHHSSCEEECCCSSSSCCEEEHHHHHHHHHHHHTTCCCTTBCC
T ss_pred cCceEEEEEEcCCCCeEEEEEEc--CCceEEEEEeecccccchhhhccccchhhhHHhHHHHHHHHHHHHHhCCCCCcce
Confidence 46899999999999999999998 799999999975432211 78999999999999999999
Q ss_pred EEeeeeccccCCCceEEEEEeccCCCCHHHH------HhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhh-cCCCCcee
Q 047768 763 IVTICSSIDFKGVDFKALVYEYMQNGSLEEW------LHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHH-HCQPPIVH 835 (1009)
Q Consensus 763 l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~------l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~-~~~~~ivH 835 (1009)
+++++... ...++||||+++|+|.++ +.... ...+++..++.++.|++.||.|||+ . +|+|
T Consensus 108 ~~~~~~~~-----~~~~lv~e~~~~~~L~~~~~~~~~l~~~~----~~~~~~~~~~~i~~qi~~~l~~lH~~~---~i~H 175 (348)
T 2pml_X 108 CEGIITNY-----DEVYIIYEYMENDSILKFDEYFFVLDKNY----TCFIPIQVIKCIIKSVLNSFSYIHNEK---NICH 175 (348)
T ss_dssp CSEEEESS-----SEEEEEEECCTTCBSSEESSSEESSCSSS----CCCCCHHHHHHHHHHHHHHHHHHHHTS---CEEC
T ss_pred EEEEEeeC-----CeEEEEEeccCCCcHHHHHHHhhhhhhcc----ccCCCHHHHHHHHHHHHHHHHHHhccC---CEee
Confidence 99997643 678999999999999998 54421 1359999999999999999999999 8 9999
Q ss_pred cCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC-CCCC-cccchHHHHHHHHH
Q 047768 836 GDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASM-RGGVYSYGILLLEI 913 (1009)
Q Consensus 836 rdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~-~~DvwS~Gvvl~el 913 (1009)
|||||+||+++.++.+||+|||.++..... ......||+.|+|||++.+. .++. ++||||||+++|||
T Consensus 176 ~dl~p~Nil~~~~~~~kl~dfg~~~~~~~~----------~~~~~~~~~~y~aPE~~~~~~~~~~~~~Di~slG~il~~l 245 (348)
T 2pml_X 176 RDVKPSNILMDKNGRVKLSDFGESEYMVDK----------KIKGSRGTYEFMPPEFFSNESSYNGAKVDIWSLGICLYVM 245 (348)
T ss_dssp CCCCGGGEEECTTSCEEECCCTTCEECBTT----------EECSSCSCGGGCCGGGGSSCCCEEHHHHHHHHHHHHHHHH
T ss_pred cCCChHhEEEcCCCcEEEeccccccccccc----------cccCCCCCcCccCchhhcCCCCCCcchhhHHHHHHHHHHH
Confidence 999999999999999999999999875432 22335689999999999887 6666 99999999999999
Q ss_pred HhCCCCCcccccCCccHHHHHHHhccchhh--hccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHH
Q 047768 914 FTRRRPTESMFNEGLTLHEFAKRALPEKVM--EIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMT 991 (1009)
Q Consensus 914 ltg~~p~~~~~~~~~~~~~~~~~~~~~~~~--~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~ 991 (1009)
++|+.||...... ............. ............ ............++.+++.+|++.||.+|||++
T Consensus 246 ~~g~~pf~~~~~~----~~~~~~i~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~l~~li~~~L~~dP~~Rps~~ 318 (348)
T 2pml_X 246 FYNVVPFSLKISL----VELFNNIRTKNIEYPLDRNHFLYPLTN---KKSTCSNNFLSNEDIDFLKLFLRKNPAERITSE 318 (348)
T ss_dssp HHSSCSSCCSSCS----HHHHHHHTSCCCCCCCSSSSSTTTTCC-----------CCCHHHHHHHHHHCCSSGGGSCCHH
T ss_pred HhCCCCCCCCCcH----HHHHHHHhccCcCCccchhhhhccccc---cccccchhhcCHHHHHHHHHHccCChhhCCCHH
Confidence 9999999754321 1111111111000 000000000000 000001122345688999999999999999999
Q ss_pred HHHH
Q 047768 992 DVVV 995 (1009)
Q Consensus 992 evl~ 995 (1009)
|+++
T Consensus 319 e~l~ 322 (348)
T 2pml_X 319 DALK 322 (348)
T ss_dssp HHHT
T ss_pred HHhc
Confidence 9986
No 265
>3fhr_A MAP kinase-activated protein kinase 3; kinase-inhibitor complex, ATP-binding, cytoplasm, nucleotide-binding, nucleus, phosphoprotein, polymorphism; HET: P4O; 1.90A {Homo sapiens} PDB: 3fxw_A* 3r1n_A* 3she_A* 2oza_A 3fyk_X* 3fyj_X* 2p3g_X* 3ka0_A* 3fpm_A* 2pzy_A* 3a2c_A* 3kc3_A* 3gok_A* 2jbo_A* 2jbp_A* 3r2y_A* 3r30_A* 3r2b_A*
Probab=100.00 E-value=5.2e-36 Score=334.55 Aligned_cols=257 Identities=21% Similarity=0.284 Sum_probs=175.3
Q ss_pred hccCccCC-cccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSN-TIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~-~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
.++|.+.+ .||+|+||+||+|.++.+++.||||++... .....+....++.++||||+++++++... ..+....
T Consensus 27 ~~~y~i~~~~lG~G~~g~V~~~~~~~~~~~vavK~~~~~----~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~~ 101 (336)
T 3fhr_A 27 TDDYQLSKQVLGLGVNGKVLECFHRRTGQKCALKLLYDS----PKARQEVDHHWQASGGPHIVCILDVYENM-HHGKRCL 101 (336)
T ss_dssp GGTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEESS----HHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEE
T ss_pred cceeEecceeeeeCCCeEEEEEEECCCCCEEEEEEecCc----HHHHHHHHHHHHhcCCCChHHHHHHHhhc-cCCCceE
Confidence 45788854 699999999999999989999999998532 22223333345667999999999997653 2234568
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC---CCceEEec
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH---DMVAHVSD 855 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~---~~~~kl~D 855 (1009)
++||||+++|+|.+++..... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++. ++.+||+|
T Consensus 102 ~lv~e~~~gg~L~~~l~~~~~----~~l~~~~~~~i~~ql~~~l~~LH~~---~ivH~dlkp~NIll~~~~~~~~~kl~D 174 (336)
T 3fhr_A 102 LIIMECMEGGELFSRIQERGD----QAFTEREAAEIMRDIGTAIQFLHSH---NIAHRDVKPENLLYTSKEKDAVLKLTD 174 (336)
T ss_dssp EEEEECCTTEEHHHHHHTC-C----CCCBHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEESCSSTTCCEEECC
T ss_pred EEEEeccCCCCHHHHHHhcCC----CCCCHHHHHHHHHHHHHHHHHHHhC---CeecCCCCHHHEEEEecCCCceEEEec
Confidence 999999999999999987643 2489999999999999999999999 9999999999999976 45699999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+++..... ......||+.|+|||++.+..++.++|||||||++|||++|+.||............ .
T Consensus 175 fg~~~~~~~~----------~~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~~~~~~--~ 242 (336)
T 3fhr_A 175 FGFAKETTQN----------ALQTPCYTPYYVAPEVLGPEKYDKSCDMWSLGVIMYILLCGFPPFYSNTGQAISPGM--K 242 (336)
T ss_dssp CTTCEEC--------------------------------CHHHHHHHHHHHHHHHHHHHHSSCCC---------------
T ss_pred cccceecccc----------ccccCCCCcCccChhhhCCCCCCchhhHHHHHHHHHHHHHCCCCCCCccchhhhhhH--H
Confidence 9999865432 122356899999999999999999999999999999999999999754322110000 0
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
............+ ....+..++.+++.+|++.||++|||++|+++
T Consensus 243 ~~~~~~~~~~~~~---------------~~~~~~~~~~~li~~~L~~dP~~Rpt~~ell~ 287 (336)
T 3fhr_A 243 RRIRLGQYGFPNP---------------EWSEVSEDAKQLIRLLLKTDPTERLTITQFMN 287 (336)
T ss_dssp --------CCCTT---------------TSTTCCHHHHHHHHHHSCSSGGGSCCHHHHHH
T ss_pred HhhhccccccCch---------------hhccCCHHHHHHHHHHCCCChhHCcCHHHHhc
Confidence 0000000000000 00122345789999999999999999999987
No 266
>1z57_A Dual specificity protein kinase CLK1; protein tyrosine kinase, splicing, human, 10Z-hymendialdisine, structural genomics; HET: DBQ; 1.70A {Homo sapiens} PDB: 2vag_A*
Probab=100.00 E-value=9.6e-36 Score=333.60 Aligned_cols=270 Identities=18% Similarity=0.248 Sum_probs=202.2
Q ss_pred hccCccCCcccccCCceEEEEEE-ecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCC------cceEEeeeecccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVL-HENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRN------LIKIVTICSSIDF 772 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~-~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 772 (1009)
.++|.+.+.||+|+||+||+|.+ +.+++.||||+++... ...+.+.+|+++++.++|++ ++++++++...
T Consensus 13 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~i~~~~~~~~~~-- 89 (339)
T 1z57_A 13 SARYEIVDTLGEGAFGKVVECIDHKAGGRHVAVKIVKNVD-RYCEAARSEIQVLEHLNTTDPNSTFRCVQMLEWFEHH-- 89 (339)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSSH-HHHHHHHHHHHHHHHHHHHCTTCTTCBCCEEEEEEET--
T ss_pred cCceEEEEEEecCCCeEEEEEEecCCCCcEEEEEEEecCC-chhHHHHHHHHHHHHhhhcCCCCceeeEeeecccccC--
Confidence 35899999999999999999998 4678999999986432 23467889999999987654 89999987543
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC-----
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH----- 847 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~----- 847 (1009)
...++||||+ +++|.+++..... ..+++.+++.++.|++.||+|||++ +|+||||||+||+++.
T Consensus 90 ---~~~~lv~e~~-~~~l~~~l~~~~~----~~~~~~~~~~~~~qi~~~l~~lH~~---~ivH~Dlkp~Nil~~~~~~~~ 158 (339)
T 1z57_A 90 ---GHICIVFELL-GLSTYDFIKENGF----LPFRLDHIRKMAYQICKSVNFLHSN---KLTHTDLKPENILFVQSDYTE 158 (339)
T ss_dssp ---TEEEEEEECC-CCBHHHHHHHTTT----CCCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCCGGGEEESCCCEEE
T ss_pred ---CcEEEEEcCC-CCCHHHHHHhcCC----CCCcHHHHHHHHHHHHHHHHHHHHC---CCcCCCCCHHHEEEecccccc
Confidence 6889999999 8999999987643 2488999999999999999999999 9999999999999987
Q ss_pred --------------CCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHH
Q 047768 848 --------------DMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEI 913 (1009)
Q Consensus 848 --------------~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~el 913 (1009)
++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||
T Consensus 159 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el 227 (339)
T 1z57_A 159 AYNPKIKRDERTLINPDIKVVDFGSATYDDEH-----------HSTLVSTRHYRAPEVILALGWSQPCDVWSIGCILIEY 227 (339)
T ss_dssp EEC----CEEEEESCCCEEECCCSSCEETTSC-----------CCSSCSCGGGCCHHHHTTSCCCTHHHHHHHHHHHHHH
T ss_pred ccCCccccccccccCCCceEeeCcccccCccc-----------cccccCCccccChHHhhCCCCCcchhhHHHHHHHHHH
Confidence 678999999999864422 1235689999999999999999999999999999999
Q ss_pred HhCCCCCcccccCCccHHHHHH--HhccchhhhccCC---------CCCCh-hhh--------hhhccccccHHHHHHHH
Q 047768 914 FTRRRPTESMFNEGLTLHEFAK--RALPEKVMEIVDP---------SLLPL-EEE--------RTNSRRVRNEECLVAVI 973 (1009)
Q Consensus 914 ltg~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~---------~l~~~-~~~--------r~~~~~~~~~~~~~~l~ 973 (1009)
++|+.||....... ....... ...+.....-... .+... ... +..........+..++.
T Consensus 228 ~~g~~pf~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 306 (339)
T 1z57_A 228 YLGFTVFPTHDSKE-HLAMMERILGPLPKHMIQKTRKRKYFHHDRLDWDEHSSAGRYVSRACKPLKEFMLSQDVEHERLF 306 (339)
T ss_dssp HHSSCSCCCSCHHH-HHHHHHHHHCSCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHH
T ss_pred HhCCCCCCCCChHH-HHHHHHHHhCCCCHHHHhhccchhHHhhccccccccccccchhhhcCcchhhhcccchhhHHHHH
Confidence 99999997543211 1111111 1111111100000 00000 000 00001112234567899
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 047768 974 KTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 974 ~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
+++.+|++.||++|||++|+++
T Consensus 307 ~li~~~L~~dP~~Rpt~~ell~ 328 (339)
T 1z57_A 307 DLIQKMLEYDPAKRITLREALK 328 (339)
T ss_dssp HHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHhCcCcccccCHHHHhc
Confidence 9999999999999999999975
No 267
>2wei_A Calmodulin-domain protein kinase 1, putative; nucleotide-binding, serine/threonine-protein kinase, CGD3_920, transferase; HET: VGG; 1.65A {Cryptosporidium parvum iowa II} PDB: 3dfa_A 3ma6_A*
Probab=100.00 E-value=1.2e-35 Score=324.41 Aligned_cols=251 Identities=26% Similarity=0.317 Sum_probs=200.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||.||+|+++.+++.||||++..... ...+.+.+|++++++++||||+++++++.. ...
T Consensus 21 ~~~y~i~~~lg~G~~g~V~~~~~~~~~~~valK~~~~~~~~~~~~~~~~~e~~~l~~l~h~~i~~~~~~~~~-----~~~ 95 (287)
T 2wei_A 21 AERYNIVCMLGKGSFGEVLKCKDRITQQEYAVKVINKASAKNKDTSTILREVELLKKLDHPNIMKLFEILED-----SSS 95 (287)
T ss_dssp HHHEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGGBSSSCHHHHHHHHHHHHTCCCTTBCCEEEEEEC-----SSE
T ss_pred hhcceeeEEEcCCCCEEEEEEEEcCCCcEEEEEEecccccchHHHHHHHHHHHHHHhccCCCccEEEEEEeC-----CCe
Confidence 4689999999999999999999988999999999965432 345688999999999999999999999754 367
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC---CceEEe
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD---MVAHVS 854 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~---~~~kl~ 854 (1009)
.++|+||+++++|.+++.... .+++.+++.++.|++.||.|||++ +|+||||||+||+++.+ +.+||+
T Consensus 96 ~~lv~e~~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dl~p~NIlv~~~~~~~~~kL~ 166 (287)
T 2wei_A 96 FYIVGELYTGGELFDEIIKRK------RFSEHDAARIIKQVFSGITYMHKH---NIVHRDLKPENILLESKEKDCDIKII 166 (287)
T ss_dssp EEEEECCCCSCBHHHHHHHHS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEESCSSTTCCEEEC
T ss_pred EEEEEEccCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeccCCChhhEEEecCCCcccEEEe
Confidence 899999999999999987654 389999999999999999999999 99999999999999764 479999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++...... ......||+.|+|||++.+ .++.++||||||+++|||++|+.||..... ....
T Consensus 167 Dfg~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~-~~~~~~Di~slG~~l~~l~~g~~p~~~~~~-----~~~~ 231 (287)
T 2wei_A 167 DFGLSTCFQQNT---------KMKDRIGTAYYIAPEVLRG-TYDEKCDVWSAGVILYILLSGTPPFYGKNE-----YDIL 231 (287)
T ss_dssp STTGGGTBCCCS---------SCSCHHHHHTTCCHHHHTT-CCCTHHHHHHHHHHHHHHHHSSCSSCCSSH-----HHHH
T ss_pred ccCcceeecCCC---------ccccccCcccccChHHhcC-CCCCchhhHhHHHHHHHHHhCCCCCCCCCH-----HHHH
Confidence 999998664321 1223458999999998765 489999999999999999999999975321 1111
Q ss_pred HHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 935 KRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 935 ~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
......... ...+. ......++.+++.+|++.||++|||+.|+++
T Consensus 232 ~~~~~~~~~-------~~~~~---------~~~~~~~~~~li~~~l~~dp~~Rps~~ell~ 276 (287)
T 2wei_A 232 KRVETGKYA-------FDLPQ---------WRTISDDAKDLIRKMLTFHPSLRITATQCLE 276 (287)
T ss_dssp HHHHHCCCC-------CCSGG---------GTTSCHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred HHHHcCCCC-------CCchh---------hhhcCHHHHHHHHHHcccChhhCcCHHHHhc
Confidence 111000000 00000 0122345789999999999999999999987
No 268
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=100.00 E-value=3.3e-36 Score=344.09 Aligned_cols=335 Identities=19% Similarity=0.208 Sum_probs=201.7
Q ss_pred cCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHH
Q 047768 167 LFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIY 246 (1009)
Q Consensus 167 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 246 (1009)
+.+++.|++++|.++...+..|.++++|++|+|++|++.+..+..|..+++|++|+|++|++++..|..|.++++|++|+
T Consensus 44 l~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 123 (390)
T 3o6n_A 44 LNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLLTVLV 123 (390)
T ss_dssp GCCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEE
T ss_pred cCCceEEEecCCchhhCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCCCEEE
Confidence 45566666666666644344456677777777777777666666777777777777777777766566666666666666
Q ss_pred hhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccC
Q 047768 247 LYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLG 326 (1009)
Q Consensus 247 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~ 326 (1009)
|++|+++ .+|..++.++++|++|++++|.+++..|..|.++++|++|++++|++++..
T Consensus 124 L~~n~l~-~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~--------------------- 181 (390)
T 3o6n_A 124 LERNDLS-SLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD--------------------- 181 (390)
T ss_dssp CCSSCCC-CCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBCC---------------------
T ss_pred CCCCccC-cCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCccc---------------------
Confidence 6666666 677776667777888888888877777777777777888887777776432
Q ss_pred CCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCC
Q 047768 327 NGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTG 406 (1009)
Q Consensus 327 ~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 406 (1009)
+..+++|+.|++++|.+++. ...++|+.|++++|+++.
T Consensus 182 ------------~~~l~~L~~L~l~~n~l~~~------------------------------~~~~~L~~L~l~~n~l~~ 219 (390)
T 3o6n_A 182 ------------LSLIPSLFHANVSYNLLSTL------------------------------AIPIAVEELDASHNSINV 219 (390)
T ss_dssp ------------GGGCTTCSEEECCSSCCSEE------------------------------ECCSSCSEEECCSSCCCE
T ss_pred ------------cccccccceeeccccccccc------------------------------CCCCcceEEECCCCeeee
Confidence 12335556666666555421 111244455555555442
Q ss_pred CCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhh
Q 047768 407 TIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILE 486 (1009)
Q Consensus 407 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~ 486 (1009)
. |.. ..++|+.|+|++|++++. ..+..+++|++|++++|.+++..
T Consensus 220 ~-~~~--~~~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~Ls~n~l~~~~------------------------------ 264 (390)
T 3o6n_A 220 V-RGP--VNVELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM------------------------------ 264 (390)
T ss_dssp E-ECC--CCSSCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE------------------------------
T ss_pred c-ccc--ccccccEEECCCCCCccc--HHHcCCCCccEEECCCCcCCCcC------------------------------
Confidence 2 211 124455555555555432 23444455554444444444332
Q ss_pred hccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceE
Q 047768 487 ITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKEL 566 (1009)
Q Consensus 487 ~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 566 (1009)
|..|..+++|++|++++|++++ +|..+..+++|+.|+|++|+++ .+|..++.+++|++|
T Consensus 265 -------------------~~~~~~l~~L~~L~L~~n~l~~-~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~l~~L~~L 323 (390)
T 3o6n_A 265 -------------------YHPFVKMQRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLL-HVERNQPQFDRLENL 323 (390)
T ss_dssp -------------------SGGGTTCSSCCEEECCSSCCCE-EECSSSCCTTCCEEECCSSCCC-CCGGGHHHHTTCSEE
T ss_pred -------------------hhHccccccCCEEECCCCcCcc-cCcccCCCCCCCEEECCCCcce-ecCccccccCcCCEE
Confidence 3334445555555555555552 4555556666777777777766 455566677777777
Q ss_pred cCCCcccccccccccccccccCceecccccCcccCCCCCcccCccccccccCCCcCCCC
Q 047768 567 DLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGIFKNKTGFSIVGNGKLCGGL 625 (1009)
Q Consensus 567 ~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~ 625 (1009)
+|++|++++. | +..+++|++|++++|++++.... ..+.......+.++...|+.+
T Consensus 324 ~L~~N~i~~~-~--~~~~~~L~~L~l~~N~~~~~~~~-~~~~~~~~~~~~~~~~~c~~~ 378 (390)
T 3o6n_A 324 YLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCNSLR-ALFRNVARPAVDDADQHCKID 378 (390)
T ss_dssp ECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHHHHH-HHTTTCCTTTBCCCCSCCCTT
T ss_pred ECCCCcccee-C--chhhccCCEEEcCCCCccchhHH-HHHHHHHhhcccccCceeccc
Confidence 7777777643 3 56677777777777777765432 233444444556666677643
No 269
>4e7w_A Glycogen synthase kinase 3; GSK3, PTyr195, transferase; HET: PTR; 3.30A {Ustilago maydis}
Probab=100.00 E-value=3.7e-36 Score=343.08 Aligned_cols=273 Identities=21% Similarity=0.266 Sum_probs=193.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeecccc-CCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDF-KGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~~~~~~ 778 (1009)
..+|.+.+.||+|+||+||+|++..++ .||+|++.... ....+|+++++.++||||+++++++..... ......
T Consensus 39 ~~~Y~~~~~lG~G~~g~V~~a~~~~~~-~~aikk~~~~~----~~~~~E~~il~~l~h~niv~l~~~~~~~~~~~~~~~~ 113 (394)
T 4e7w_A 39 EIAYTNCKVIGNGSFGVVFQAKLVESD-EVAIKKVLQDK----RFKNRELQIMRIVKHPNVVDLKAFFYSNGDKKDEVFL 113 (394)
T ss_dssp EEEEEEEEEEEEETTEEEEEEEETTTE-EEEEEEEECCT----TSCCHHHHHHHTCCCTTBCCEEEEEEEESSSSSCEEE
T ss_pred cceEEEeEEEeeCCCeEEEEEEECCCC-eEEEEEEecCc----chHHHHHHHHHhCCCCCcceEEEEEEecCCCCCceEE
Confidence 357999999999999999999997555 48888875332 223479999999999999999999865422 334457
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC-CCCceEEeccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD-HDMVAHVSDFG 857 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~-~~~~~kl~DfG 857 (1009)
++||||++++.+......... ...+++..++.++.|++.||+|||++ +|+||||||+||+++ .++.+||+|||
T Consensus 114 ~lv~e~~~~~l~~~~~~~~~~---~~~~~~~~~~~~~~qi~~aL~~LH~~---~ivHrDlkp~Nill~~~~~~~kL~DFG 187 (394)
T 4e7w_A 114 NLVLEYVPETVYRASRHYAKL---KQTMPMLLIKLYMYQLLRSLAYIHSI---GICHRDIKPQNLLLDPPSGVLKLIDFG 187 (394)
T ss_dssp EEEEECCSEEHHHHHHHHHHT---TSCCCHHHHHHHHHHHHHHHHHHHHT---TEECSCCSGGGEEEETTTTEEEECCCT
T ss_pred EEEeeccCccHHHHHHHHHhh---cCCCCHHHHHHHHHHHHHHHHHHHHC---CccCCCCCHHHEEEcCCCCcEEEeeCC
Confidence 899999976544333221110 12489999999999999999999999 999999999999999 79999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKR 936 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~ 936 (1009)
+|+...... ......||+.|+|||++.+. .++.++||||+||++|||++|+.||...... ..+..+...
T Consensus 188 ~a~~~~~~~---------~~~~~~~t~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~~~~-~~l~~i~~~ 257 (394)
T 4e7w_A 188 SAKILIAGE---------PNVSYICSRYYRAPELIFGATNYTTNIDIWSTGCVMAELMQGQPLFPGESGI-DQLVEIIKV 257 (394)
T ss_dssp TCEECCTTC---------CCCSSCSCGGGCCHHHHTTCSSCCTHHHHHHHHHHHHHHHHSSCSSCCSSHH-HHHHHHHHH
T ss_pred CcccccCCC---------CCcccccCcCccCHHHHcCCCCCCcHHHHHHHHHHHHHHHhCCCCCCCCCHH-HHHHHHHHH
Confidence 998764331 12245689999999998765 5899999999999999999999999753221 112222211
Q ss_pred hccc---hhhh----ccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 937 ALPE---KVME----IVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 937 ~~~~---~~~~----~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.... .+.. .....+...... ............++.+++.+|++.||++|||+.|+++
T Consensus 258 ~g~p~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~li~~~L~~dP~~R~t~~e~l~ 321 (394)
T 4e7w_A 258 LGTPSREQIKTMNPNYMEHKFPQIRPH--PFSKVFRPRTPPDAIDLISRLLEYTPSARLTAIEALC 321 (394)
T ss_dssp HCCCCHHHHHHHCGGGSSSCCCCCCCC--CHHHHSCTTCCHHHHHHHHHHCCSSGGGSCCHHHHHT
T ss_pred hCCCCHHHHHhhChhhhhhccccccCC--cHHHhccccCCHHHHHHHHHHhCCChhhCCCHHHHhc
Confidence 1110 0110 011000000000 0000011123356889999999999999999999976
No 270
>1zy4_A Serine/threonine-protein kinase GCN2; translation regulator, signal transduction, acid starvation, starvation stress response; 1.95A {Saccharomyces cerevisiae} PDB: 1zy5_A* 1zyd_A* 1zyc_A* 1zxe_A
Probab=100.00 E-value=4.7e-36 Score=330.35 Aligned_cols=264 Identities=22% Similarity=0.278 Sum_probs=194.2
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccc--------
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSID-------- 771 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-------- 771 (1009)
.++|++.+.||+|+||.||+|++..+++.||||+++... ...+.+.+|++++++++||||+++++++....
T Consensus 5 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~E~~~l~~l~h~~i~~~~~~~~~~~~~~~~~~~ 83 (303)
T 1zy4_A 5 ASDFEEIAVLGQGAFGQVVKARNALDSRYYAIKKIRHTE-EKLSTILSEVMLLASLNHQYVVRYYAAWLERRNFVKPMTA 83 (303)
T ss_dssp HHHEEEEEEEEECSSEEEEEEEETTTCCEEEEEEEEEEH-HHHHHHHHHHHHHTTCCCTTBCCEEEEEEECCCCCC----
T ss_pred cccchhhheeccCCcEEEEEEEEcCCCeEEEEEEEeccH-HHHHHHHHHHHHHHhcCchHHHHHHHHHHhhcchhhhhcc
Confidence 457999999999999999999998899999999996432 23467889999999999999999999875421
Q ss_pred cCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCce
Q 047768 772 FKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVA 851 (1009)
Q Consensus 772 ~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~ 851 (1009)
.......++||||+++|+|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++.++.+
T Consensus 84 ~~~~~~~~lv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~~l~~LH~~---~i~H~dlkp~Nil~~~~~~~ 155 (303)
T 1zy4_A 84 VKKKSTLFIQMEYCENGTLYDLIHSENL-----NQQRDEYWRLFRQILEALSYIHSQ---GIIHRDLKPMNIFIDESRNV 155 (303)
T ss_dssp --CEEEEEEEEECCCSCBHHHHHHHSCG-----GGCHHHHHHHHHHHHHHHHHHHHT---TCCCSCCCGGGEEECTTSCE
T ss_pred cccCCceEEEEecCCCCCHHHhhhcccc-----ccchHHHHHHHHHHHHHHHHHHhC---CeecccCCHHhEEEcCCCCE
Confidence 1234678999999999999999986543 378899999999999999999999 99999999999999999999
Q ss_pred EEeccccccccCCCCCCCc------cccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCcccc
Q 047768 852 HVSDFGLAKFLSASPLGNV------VETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESMF 924 (1009)
Q Consensus 852 kl~DfGla~~~~~~~~~~~------~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~~ 924 (1009)
||+|||+++.......... ...........||+.|+|||++.+. .++.++|||||||++|||++ ||....
T Consensus 156 kl~dfg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~---p~~~~~ 232 (303)
T 1zy4_A 156 KIGDFGLAKNVHRSLDILKLDSQNLPGSSDNLTSAIGTAMYVATEVLDGTGHYNEKIDMYSLGIIFFEMIY---PFSTGM 232 (303)
T ss_dssp EECCCCCCSCTTC-------------------------CTTSCHHHHTSCSCCCTHHHHHHHHHHHHHHHS---CCSSHH
T ss_pred EEeeCcchhhcccccchhccccccccccccccccCCCcccccCcccccCCCCCcchhhHHHHHHHHHHHHh---ccCCch
Confidence 9999999987653210000 0001222345689999999998764 68999999999999999998 554211
Q ss_pred cCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 925 NEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 925 ~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
.. ...... +. ..... .+. ......+..+.+++.+|++.||.+|||+.|+++
T Consensus 233 ~~----~~~~~~-----~~---~~~~~-~~~-------~~~~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 283 (303)
T 1zy4_A 233 ER----VNILKK-----LR---SVSIE-FPP-------DFDDNKMKVEKKIIRLLIDHDPNKRPGARTLLN 283 (303)
T ss_dssp HH----HHHHHH-----HH---STTCC-CCT-------TCCTTTSHHHHHHHHHHTCSSGGGSCCHHHHHH
T ss_pred hH----HHHHHh-----cc---ccccc-cCc-------cccccchHHHHHHHHHHHhcCcccCcCHHHHhC
Confidence 11 111111 00 00000 000 011123345789999999999999999999986
No 271
>3rgf_A Cyclin-dependent kinase 8; protein kinase complex, transferase,transcription; HET: BAX; 2.20A {Homo sapiens}
Probab=100.00 E-value=5.4e-36 Score=343.77 Aligned_cols=209 Identities=23% Similarity=0.331 Sum_probs=157.6
Q ss_pred ccCcc-CCcccccCCceEEEEEEe--cCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 701 NEFSS-SNTIGRGSFGFVYKGVLH--ENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 701 ~~~~~-~~~lg~G~~g~V~~~~~~--~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
+.|.+ .++||+|+||+||+|+++ .+++.||||+++.. .....+.+|++++++++||||+++++++.. .....
T Consensus 20 ~~y~~~g~~lG~G~~g~Vy~~~~~~~~~~~~vaiK~~~~~--~~~~~~~~E~~~l~~l~hpniv~~~~~~~~---~~~~~ 94 (405)
T 3rgf_A 20 DLFEYEGCKVGRGTYGHVYKAKRKDGKDDKDYALKQIEGT--GISMSACREIALLRELKHPNVISLQKVFLS---HADRK 94 (405)
T ss_dssp HHEECSSCCCC-----EEEEEEESSSSCCCCEEEEECSSS--SCCHHHHHHHHHHHHCCCTTBCCCCEEEEE---TTTTE
T ss_pred hhhhhcCcEeeecCCeEEEEEEEccCCCCeEEEEEEECCC--CCCHHHHHHHHHHHhcCCCCeeeEeeEEec---CCCCe
Confidence 34665 568999999999999976 46889999998533 234678899999999999999999999753 23467
Q ss_pred EEEEEeccCCCCHHHHHhccCCC---CCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee----CCCCc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQ---LGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL----DHDMV 850 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~---~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill----~~~~~ 850 (1009)
.++||||++ |+|.+++...... .....+++..++.++.|++.||+|||++ +|+||||||+|||+ +.++.
T Consensus 95 ~~lv~e~~~-~~l~~~~~~~~~~~~~~~~~~l~~~~~~~i~~qi~~al~~LH~~---~ivH~Dlkp~NIll~~~~~~~~~ 170 (405)
T 3rgf_A 95 VWLLFDYAE-HDLWHIIKFHRASKANKKPVQLPRGMVKSLLYQILDGIHYLHAN---WVLHRDLKPANILVMGEGPERGR 170 (405)
T ss_dssp EEEEEECCS-EEHHHHHHHHHHHC-------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEECCSSTTTTC
T ss_pred EEEEEeCCC-CCHHHHHHHhccccccccccCCCHHHHHHHHHHHHHHHHHHHhC---CEeCCCcCHHHeEEecCCCCCCc
Confidence 899999996 5888888643211 1122489999999999999999999999 99999999999999 77899
Q ss_pred eEEeccccccccCCCCCCCccccCCccccccccccccCccccCCC-CCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 851 AHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGG-EASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 851 ~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~-~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
+||+|||+|+....... .........||+.|+|||++.+. .++.++|||||||++|||++|+.||...
T Consensus 171 ~kl~Dfg~a~~~~~~~~-----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~DiwSlG~il~ell~g~~pf~~~ 239 (405)
T 3rgf_A 171 VKIADMGFARLFNSPLK-----PLADLDPVVVTFWYRAPELLLGARHYTKAIDIWAIGCIFAELLTSEPIFHCR 239 (405)
T ss_dssp EEECCTTCCC---------------------CCCTTCCHHHHTTCCSCCHHHHHHHHHHHHHHHHHSSCTTCCC
T ss_pred EEEEECCCceecCCCCc-----ccccCCCceecCcccCchhhcCCCcccchhhhHHHHHHHHHHHhCCCCCCCc
Confidence 99999999987653211 11222346789999999998874 5899999999999999999999999643
No 272
>3a99_A Proto-oncogene serine/threonine-protein kinase PI; PIM-1, P27KIP1, peptide drug, prostate cancer, transferase; HET: ANP; 1.60A {Homo sapiens} PDB: 3bgq_A* 3bgp_A* 2obj_A* 3bgz_A* 3t9i_A* 3dcv_A* 1xws_A* 2xj1_A* 2xix_A* 2xiz_A* 2xj0_A* 2xiy_A* 2xj2_A* 3f2a_A* 1xr1_A* 1xqz_A* 3cy2_A* 3cxw_A* 3cy3_A* 2bik_B* ...
Probab=100.00 E-value=2.6e-36 Score=334.86 Aligned_cols=242 Identities=21% Similarity=0.307 Sum_probs=198.1
Q ss_pred HhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc------chHHHHHHHHHHHhcC--CCCcceEEeeeecc
Q 047768 699 ATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG------GSKSFAAECEALRSIR--HRNLIKIVTICSSI 770 (1009)
Q Consensus 699 ~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~ 770 (1009)
..++|.+.+.||+|+||.||+|++..+++.||||+++..... ....+.+|++++++++ |+||+++++++..
T Consensus 41 ~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~i~~~~~~~~~- 119 (320)
T 3a99_A 41 LESQYQVGPLLGSGGFGSVYSGIRVSDNLPVAIKHVEKDRISDWGELPNGTRVPMEVVLLKKVSSGFSGVIRLLDWFER- 119 (320)
T ss_dssp CTTTEEEEEECSSSSSCEEEEEEETTTTEEEEEEEEEGGGCCCEEECTTCCEEEHHHHHHHHHCSSSCSBCCEEEEEEC-
T ss_pred ccCceEEEEEEeeCCCeEEEEEEECCCCcEEEEEEEecccchhhhhhhhhhHHHHHHHHHHhhccCCCCceEEEEEEec-
Confidence 456899999999999999999999989999999999755322 2345778999999996 5999999999764
Q ss_pred ccCCCceEEEEEeccCC-CCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC-CC
Q 047768 771 DFKGVDFKALVYEYMQN-GSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD-HD 848 (1009)
Q Consensus 771 ~~~~~~~~~lv~e~~~~-gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~-~~ 848 (1009)
....++|+||+.+ ++|.+++.... .+++..++.++.|++.||+|||+. +|+||||||+||+++ ++
T Consensus 120 ----~~~~~lv~e~~~~~~~L~~~l~~~~------~l~~~~~~~i~~qi~~~L~~LH~~---~ivH~Dlkp~NIll~~~~ 186 (320)
T 3a99_A 120 ----PDSFVLILERPEPVQDLFDFITERG------ALQEELARSFFWQVLEAVRHCHNC---GVLHRDIKDENILIDLNR 186 (320)
T ss_dssp ----SSEEEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEETTT
T ss_pred ----CCcEEEEEEcCCCCccHHHHHhccC------CCCHHHHHHHHHHHHHHHHHHHHC---CcEeCCCCHHHEEEeCCC
Confidence 3678999999976 89999998754 389999999999999999999999 999999999999999 78
Q ss_pred CceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCcccccCC
Q 047768 849 MVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESMFNEG 927 (1009)
Q Consensus 849 ~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~~~~~ 927 (1009)
+.+||+|||+++...... .....||+.|+|||++.+..+ +.++|||||||++|||++|+.||...
T Consensus 187 ~~~kL~Dfg~~~~~~~~~----------~~~~~gt~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~---- 252 (320)
T 3a99_A 187 GELKLIDFGSGALLKDTV----------YTDFDGTRVYSPPEWIRYHRYHGRSAAVWSLGILLYDMVCGDIPFEHD---- 252 (320)
T ss_dssp TEEEECCCTTCEECCSSC----------BCCCCSCGGGSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH----
T ss_pred CCEEEeeCcccccccccc----------ccCCCCCccCCChHHhccCCCCCccchHHhHHHHHHHHHHCCCCCCCh----
Confidence 999999999998765321 223568999999999887766 78899999999999999999999632
Q ss_pred ccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 928 LTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 928 ~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
........ ... .....++.+++.+||+.||++|||++|+++
T Consensus 253 ---~~~~~~~~----------~~~--------------~~~~~~~~~li~~~l~~dp~~Rps~~~ll~ 293 (320)
T 3a99_A 253 ---EEIIRGQV----------FFR--------------QRVSSECQHLIRWCLALRPSDRPTFEEIQN 293 (320)
T ss_dssp ---HHHHHCCC----------CCS--------------SCCCHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred ---hhhhcccc----------ccc--------------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 11111000 000 012245789999999999999999999976
No 273
>2y4i_B KSR2, HKSR2, kinase suppressor of RAS 2; transferase, KSR1; HET: ATP; 3.46A {Homo sapiens}
Probab=100.00 E-value=3.5e-36 Score=334.08 Aligned_cols=264 Identities=22% Similarity=0.298 Sum_probs=198.2
Q ss_pred HHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCC
Q 047768 697 SKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKG 774 (1009)
Q Consensus 697 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~ 774 (1009)
....++|.+.+.||+|+||.||+|.++. .||+|+++.... ...+.+.+|++++++++||||+++++++...
T Consensus 29 ~i~~~~~~~~~~lg~G~~g~V~~~~~~~---~~avk~~~~~~~~~~~~~~~~~e~~~l~~l~h~~iv~~~~~~~~~---- 101 (319)
T 2y4i_B 29 DIPFEQLEIGELIGKGRFGQVYHGRWHG---EVAIRLIDIERDNEDQLKAFKREVMAYRQTRHENVVLFMGACMSP---- 101 (319)
T ss_dssp SSCCSCEECCCBCCCSSSSEEEEEEESS---SEEEEECCCCSCCCCCCCCCCTTGGGGTTCCCTTBCCCCEEEECS----
T ss_pred cCCHHHeEEeeEeccCCceEEEEEEEcC---eEEEEEeecCCCCHHHHHHHHHHHHHHhcCCCCCEeEEEEEEecC----
Confidence 3345789999999999999999998853 499999865432 2345678899999999999999999997643
Q ss_pred CceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 775 VDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 775 ~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
...++||||+++++|.+++..... .+++.+++.++.|++.||+|||++ +|+||||||+||+++ ++.+||+
T Consensus 102 -~~~~iv~e~~~~~~L~~~l~~~~~-----~~~~~~~~~i~~qi~~al~~lH~~---~i~H~dlkp~NIl~~-~~~~~l~ 171 (319)
T 2y4i_B 102 -PHLAIITSLCKGRTLYSVVRDAKI-----VLDVNKTRQIAQEIVKGMGYLHAK---GILHKDLKSKNVFYD-NGKVVIT 171 (319)
T ss_dssp -SCEEEECBCCCSEEHHHHTTSSCC-----CCCSHHHHHHHHHHHHHHHHHHHT---TCCCCCCCSTTEEEC---CCEEC
T ss_pred -CceEEEeecccCCcHHHHHHhcCC-----CCCHHHHHHHHHHHHHHHHHHHhC---CccccCCChhhEEEe-CCCEEEe
Confidence 568999999999999999987543 388999999999999999999999 999999999999998 6799999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCC---------CCCCCcccchHHHHHHHHHHhCCCCCccccc
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG---------GEASMRGGVYSYGILLLEIFTRRRPTESMFN 925 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~---------~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~ 925 (1009)
|||+++........ ..........||+.|+|||++.+ ..++.++||||||+++|||++|+.||.....
T Consensus 172 Dfg~~~~~~~~~~~---~~~~~~~~~~g~~~y~aPE~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~p~~~~~~ 248 (319)
T 2y4i_B 172 DFGLFSISGVLQAG---RREDKLRIQNGWLCHLAPEIIRQLSPDTEEDKLPFSKHSDVFALGTIWYELHAREWPFKTQPA 248 (319)
T ss_dssp CCSCCC-------------CCSCBCCSGGGGTSCHHHHSCBSCC--CCCSCCCHHHHHHHHHHHHHHHHHSSCSSSSCCH
T ss_pred ecCCcccccccccc---ccccccccCCCcccccChHHhhhccccccccccCCCchhhHHHHHHHHHHHHhCCCCCCCCCH
Confidence 99998765432111 11122234568999999999864 4578899999999999999999999974321
Q ss_pred CCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHh
Q 047768 926 EGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQN 1003 (1009)
Q Consensus 926 ~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~ 1003 (1009)
.......... ..+.... ..+..++.+++.+||+.||++|||+.|+++.|+.+.+.
T Consensus 249 -----~~~~~~~~~~-----~~~~~~~-------------~~~~~~l~~li~~~l~~~p~~Rpt~~~l~~~l~~l~~~ 303 (319)
T 2y4i_B 249 -----EAIIWQMGTG-----MKPNLSQ-------------IGMGKEISDILLFCWAFEQEERPTFTKLMDMLEKLPKR 303 (319)
T ss_dssp -----HHHHHHHHTT-----CCCCCCC-------------SSCCTTHHHHHHHHHCSSTTTSCCHHHHHHHHTTC---
T ss_pred -----HHHHHHhccC-----CCCCCCc-------------CCCCHHHHHHHHHHhcCChhhCcCHHHHHHHHHHHHHh
Confidence 1111111000 0111100 01223477999999999999999999999999887665
No 274
>1q8y_A SR protein kinase; transferase; HET: ADP ADE; 2.05A {Saccharomyces cerevisiae} SCOP: d.144.1.7 PDB: 1q8z_A 1q97_A* 1q99_A* 1how_A 2jd5_A
Probab=100.00 E-value=1.1e-35 Score=337.89 Aligned_cols=276 Identities=17% Similarity=0.230 Sum_probs=202.6
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-----------CCCcceEEeeee
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-----------HRNLIKIVTICS 768 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-----------h~niv~l~~~~~ 768 (1009)
.++|.+.+.||+|+||+||+|++..+++.||||+++... ...+.+.+|++++++++ ||||+++++++.
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~-~~~~~~~~e~~~l~~l~~~~~~~~~~~~~~~i~~~~~~~~ 96 (373)
T 1q8y_A 18 DARYILVRKLGWGHFSTVWLAKDMVNNTHVAMKIVRGDK-VYTEAAEDEIKLLQRVNDADNTKEDSMGANHILKLLDHFN 96 (373)
T ss_dssp TTTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHTCCSHHHHHHHTTBCCCCEEEE
T ss_pred CCeEEEEEeeeecCCeEEEEEEecCCCcEEEEEEecCCc-cchhhhhHHHHHHHHhhcccccchhccccchHHHHHHHhh
Confidence 358999999999999999999998899999999986332 23467889999999886 899999999976
Q ss_pred ccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeC--
Q 047768 769 SIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLD-- 846 (1009)
Q Consensus 769 ~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~-- 846 (1009)
.. .......++||||+ +++|.+++...... .+++..++.++.|++.||+|||+++ +|+||||||+||+++
T Consensus 97 ~~-~~~~~~~~lv~e~~-~~~L~~~~~~~~~~----~~~~~~~~~i~~qi~~aL~~lH~~~--~ivH~Dikp~NIll~~~ 168 (373)
T 1q8y_A 97 HK-GPNGVHVVMVFEVL-GENLLALIKKYEHR----GIPLIYVKQISKQLLLGLDYMHRRC--GIIHTDIKPENVLMEIV 168 (373)
T ss_dssp EE-ETTEEEEEEEECCC-CEEHHHHHHHTTTS----CCCHHHHHHHHHHHHHHHHHHHHTT--CEECSCCSGGGEEEEEE
T ss_pred cc-CCCCceEEEEEecC-CCCHHHHHHHhhcc----CCcHHHHHHHHHHHHHHHHHHHhcC--CEEecCCChHHeEEecc
Confidence 53 12334789999999 89999999875432 3899999999999999999999953 899999999999994
Q ss_pred ----CCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcc
Q 047768 847 ----HDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTES 922 (1009)
Q Consensus 847 ----~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~ 922 (1009)
..+.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||++|+.||..
T Consensus 169 ~~~~~~~~~kl~Dfg~a~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 237 (373)
T 1q8y_A 169 DSPENLIQIKIADLGNACWYDEH-----------YTNSIQTREYRSPEVLLGAPWGCGADIWSTACLIFELITGDFLFEP 237 (373)
T ss_dssp ETTTTEEEEEECCCTTCEETTBC-----------CCSCCSCGGGCCHHHHHTCCCCTHHHHHHHHHHHHHHHHSSCCC--
T ss_pred CCCcCcceEEEcccccccccCCC-----------CCCCCCCccccCcHHHhCCCCCchHhHHHHHHHHHHHHhCCCCCCC
Confidence 4458999999999866432 1234689999999999999999999999999999999999999975
Q ss_pred cccCC-----ccHHHHHHHh--ccchh-------hhccCC---------CCCChhhhhhhccccccHHHHHHHHHHHhhc
Q 047768 923 MFNEG-----LTLHEFAKRA--LPEKV-------MEIVDP---------SLLPLEEERTNSRRVRNEECLVAVIKTGVAC 979 (1009)
Q Consensus 923 ~~~~~-----~~~~~~~~~~--~~~~~-------~~~~d~---------~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~c 979 (1009)
..... .......... .+... ...+.. .-.................+..++.+++.+|
T Consensus 238 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~li~~~ 317 (373)
T 1q8y_A 238 DEGHSYTKDDDHIAQIIELLGELPSYLLRNGKYTRTFFNSRGLLRNISKLKFWPLEDVLTEKYKFSKDEAKEISDFLSPM 317 (373)
T ss_dssp -------CHHHHHHHHHHHHCSCCHHHHHHCTTHHHHBCC--CBSSCCCCCBCCHHHHHHHTTCCCHHHHHHHHHHHGGG
T ss_pred CcccccCChHHHHHHHHHhcCCCCHHHHhccchhhhhcCCcchhcccccccccchhhhhhhcccCCcchHHHHHHHHHHH
Confidence 43211 0111111110 01100 000000 0000000001111123346677899999999
Q ss_pred cCCCCCCCCCHHHHHH
Q 047768 980 SIESPFDRMEMTDVVV 995 (1009)
Q Consensus 980 l~~dp~~Rpt~~evl~ 995 (1009)
++.||++|||++|+++
T Consensus 318 L~~dP~~Rpt~~ell~ 333 (373)
T 1q8y_A 318 LQLDPRKRADAGGLVN 333 (373)
T ss_dssp GCSSTTTCBCHHHHHT
T ss_pred hccCccccCCHHHHhh
Confidence 9999999999999976
No 275
>3cek_A Dual specificity protein kinase TTK; HMPS1, PYT, ESK, phosphotyros picked threonine kinase, SGC, structural genomics consortiu binding; HET: 7PE; 2.30A {Homo sapiens} PDB: 3gfw_A* 3h9f_A* 2x9e_A* 3hmp_A* 3hmn_A* 3hmo_A*
Probab=100.00 E-value=1.4e-35 Score=328.25 Aligned_cols=254 Identities=22% Similarity=0.337 Sum_probs=193.0
Q ss_pred HHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcC--CCCcceEEeeeeccccC
Q 047768 698 KATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIR--HRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 698 ~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~ 773 (1009)
...++|.+.+.||+|+||.||+|.+. +++.||||++...... ..+.+.+|++++++++ ||||+++++++...
T Consensus 25 ~~~~~y~~~~~lg~G~~g~Vy~~~~~-~~~~vavK~~~~~~~~~~~~~~~~~E~~~l~~l~~~~~~iv~~~~~~~~~--- 100 (313)
T 3cek_A 25 VKGRIYSILKQIGSGGSSKVFQVLNE-KKQIYAIKYVNLEEADNQTLDSYRNEIAYLNKLQQHSDKIIRLYDYEITD--- 100 (313)
T ss_dssp ETTEEEEEEEEEECCSSEEEEEEECT-TCCEEEEEEEECSSCCHHHHHHHHHHHHHHHHHGGGCTTBCCEEEEEECS---
T ss_pred eccceEEEEEEecCCCCEEEEEEEcC-CCcEEEEEEeccccccccchHHHHHHHHHHHhccccCCceEEEEEEeecC---
Confidence 34578999999999999999999985 6889999999654322 3467899999999997 59999999987643
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEE
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHV 853 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl 853 (1009)
...++||| +.+++|.+++.... .+++.+++.++.|++.||.|||++ +|+||||||+||++++ +.+||
T Consensus 101 --~~~~lv~e-~~~~~L~~~l~~~~------~~~~~~~~~i~~qi~~aL~~LH~~---~ivH~dlkp~NIl~~~-~~~kL 167 (313)
T 3cek_A 101 --QYIYMVME-CGNIDLNSWLKKKK------SIDPWERKSYWKNMLEAVHTIHQH---GIVHSDLKPANFLIVD-GMLKL 167 (313)
T ss_dssp --SEEEEEEC-CCSEEHHHHHHHCS------SCCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCCGGGEEEET-TEEEE
T ss_pred --CEEEEEEe-cCCCcHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CceecCCCcccEEEEC-CeEEE
Confidence 67899999 56889999998754 389999999999999999999999 9999999999999964 89999
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccCC-----------CCCCCcccchHHHHHHHHHHhCCCCCcc
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-----------GEASMRGGVYSYGILLLEIFTRRRPTES 922 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-----------~~~~~~~DvwS~Gvvl~elltg~~p~~~ 922 (1009)
+|||+++....... ........||+.|+|||++.+ ..++.++||||||+++|||++|+.||..
T Consensus 168 ~Dfg~~~~~~~~~~------~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~ 241 (313)
T 3cek_A 168 IDFGIANQMQPDTT------SVVKDSQVGTVNYMPPEAIKDMSSSRENGKSKSKISPKSDVWSLGCILYYMTYGKTPFQQ 241 (313)
T ss_dssp CCCSSSCC--------------------CCGGGCCHHHHTTCC----------CCCHHHHHHHHHHHHHHHHHSSCTTTT
T ss_pred eeccccccccCccc------cccccCCCCCCCcCCHHHHhhcccccccccccccCCchHHHHHHHHHHHHHHhCCCchhh
Confidence 99999987654321 111224568999999999875 4788899999999999999999999975
Q ss_pred cccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 923 MFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 923 ~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
..... ... ...++....... ......++.+++.+||+.||++||+++|+++.
T Consensus 242 ~~~~~---~~~---------~~~~~~~~~~~~----------~~~~~~~l~~li~~~l~~dp~~Rps~~ell~h 293 (313)
T 3cek_A 242 IINQI---SKL---------HAIIDPNHEIEF----------PDIPEKDLQDVLKCCLKRDPKQRISIPELLAH 293 (313)
T ss_dssp CCSHH---HHH---------HHHHCTTSCCCC----------CCCSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred HHHHH---HHH---------HHHHhcccccCC----------cccchHHHHHHHHHHccCCcccCcCHHHHhcC
Confidence 33221 111 111111111000 00112357899999999999999999999864
No 276
>3aln_A Dual specificity mitogen-activated protein kinase; protein AMP-PNP complex, transferase; HET: ANP; 2.30A {Homo sapiens} PDB: 3alo_A*
Probab=100.00 E-value=8.2e-36 Score=332.27 Aligned_cols=259 Identities=22% Similarity=0.257 Sum_probs=176.8
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc-cchHHHHHHHH-HHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-GGSKSFAAECE-ALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-~~~~~~~~E~~-~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||.||+|.++.+|+.||||+++.... .....+..|+. +++.++||||+++++++... +.
T Consensus 21 ~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~e~~~~~~~~~h~niv~~~~~~~~~-----~~ 95 (327)
T 3aln_A 21 AEDLKDLGEIGRGAYGSVNKMVHKPSGQIMAVKRIRSTVDEKEQKQLLMDLDVVMRSSDCPYIVQFYGALFRE-----GD 95 (327)
T ss_dssp SCSEEC-CEEEECSSEEEEEEEETTTTEEEEEEEEECCCCHHHHHHHHHHHHHHHSSCCCTTBCCEEEEEECS-----SE
T ss_pred HHHhhehheeccCCCEEEEEEEEcCCCCEEEEEEeecccCchHHHHHHHHHHHHHHcCCCCcEeeeeeEEEeC-----Cc
Confidence 4688899999999999999999998999999999975432 22345556666 66778999999999997643 67
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+++ +|.+++...... ....+++..+..++.|++.|+.|||+.. +|+||||||+||+++.++.+||+|||
T Consensus 96 ~~lv~e~~~~-~l~~~~~~~~~~-~~~~~~~~~~~~i~~~i~~~l~~lH~~~--~ivH~dlkp~NIll~~~~~~kl~Dfg 171 (327)
T 3aln_A 96 CWICMELMST-SFDKFYKYVYSV-LDDVIPEEILGKITLATVKALNHLKENL--KIIHRDIKPSNILLDRSGNIKLCDFG 171 (327)
T ss_dssp EEEEECCCSE-EHHHHHHHHHHT-TCCCCCHHHHHHHHHHHHHHHHHHHHHH--SCCCSCCCGGGEEEETTTEEEECCCS
T ss_pred eEEEEeecCC-ChHHHHHHHHhh-hcccCcHHHHHHHHHHHHHHHHHHhccC--CEeECCCCHHHEEEcCCCCEEEccCC
Confidence 8999999974 888887641100 0124899999999999999999999853 79999999999999999999999999
Q ss_pred cccccCCCCCCCccccCCccccccccccccCcccc----CCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHH
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYG----LGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEF 933 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~ 933 (1009)
+++...... ......||+.|+|||++ .+..++.++|||||||++|||++|+.||....... .
T Consensus 172 ~~~~~~~~~---------~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~~----~- 237 (327)
T 3aln_A 172 ISGQLVDSI---------AKTRDAGCRPYMAPERIDPSASRQGYDVRSDVWSLGITLYELATGRFPYPKWNSVF----D- 237 (327)
T ss_dssp SSCC---------------------------------------CCSHHHHHHHHHHHHHHHHSCCCSSCC----------
T ss_pred Cceeccccc---------ccccCCCCccccCceeeccccCcCCCCchhhHHHHHHHHHHHHHCCCCCCCcchHH----H-
Confidence 998664321 11234689999999998 46678999999999999999999999997432110 0
Q ss_pred HHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 934 AKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 934 ~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
....+........+ ......+...+.+++.+||+.||++|||+.|+++
T Consensus 238 -------~~~~~~~~~~~~~~-------~~~~~~~~~~l~~li~~~l~~dp~~Rps~~ell~ 285 (327)
T 3aln_A 238 -------QLTQVVKGDPPQLS-------NSEEREFSPSFINFVNLCLTKDESKRPKYKELLK 285 (327)
T ss_dssp ---------CCCCCSCCCCCC-------CCSSCCCCHHHHHHHHHHTCSSGGGSCCHHHHTT
T ss_pred -------HHHHHhcCCCCCCC-------CcccccCCHHHHHHHHHHhhCChhhCcCHHHHHh
Confidence 01111111000000 0001123346889999999999999999999976
No 277
>2iwi_A Serine/threonine-protein kinase PIM-2; nucleotide-binding, cancer, leukemia, transferase, ATP-binding, proto- oncogene, phosphorylation; HET: HB1; 2.80A {Homo sapiens}
Probab=100.00 E-value=6.7e-36 Score=330.67 Aligned_cols=244 Identities=23% Similarity=0.336 Sum_probs=191.8
Q ss_pred HHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc------chHHHHHHHHHHHhc----CCCCcceEEee
Q 047768 697 SKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG------GSKSFAAECEALRSI----RHRNLIKIVTI 766 (1009)
Q Consensus 697 ~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------~~~~~~~E~~~l~~l----~h~niv~l~~~ 766 (1009)
..-.++|.+.+.||+|+||.||+|.+..+++.||||+++..... ....+.+|+++++++ +||||++++++
T Consensus 27 ~~~~~~y~~~~~lg~G~~g~Vy~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~e~~~l~~l~~~~~h~~i~~~~~~ 106 (312)
T 2iwi_A 27 EAFEAEYRLGPLLGKGGFGTVFAGHRLTDRLQVAIKVIPRNRVLGWSPLSDSVTCPLEVALLWKVGAGGGHPGVIRLLDW 106 (312)
T ss_dssp ------CEEEEEEEEETTEEEEEEECTTTCCEEEEEECCSTTTC--------CCCCHHHHHHHHHHSSCCCSSBCCEEEE
T ss_pred hhhhhceEEeeEEEcCCCEEEEEEEEccCCeEEEEEEEecccccccccchhhHHHHHHHHHHHhhcccCCCCCeeeEEEE
Confidence 34457899999999999999999999889999999999644321 223466799999998 89999999998
Q ss_pred eeccccCCCceEEEEEec-cCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee
Q 047768 767 CSSIDFKGVDFKALVYEY-MQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL 845 (1009)
Q Consensus 767 ~~~~~~~~~~~~~lv~e~-~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill 845 (1009)
+.. ....++|+|| +.+++|.+++.... .+++.+++.++.|++.||+|||++ +|+||||||+||++
T Consensus 107 ~~~-----~~~~~~v~e~~~~~~~L~~~l~~~~------~~~~~~~~~~~~qi~~~l~~lH~~---~i~H~dlkp~Nil~ 172 (312)
T 2iwi_A 107 FET-----QEGFMLVLERPLPAQDLFDYITEKG------PLGEGPSRCFFGQVVAAIQHCHSR---GVVHRDIKDENILI 172 (312)
T ss_dssp C----------CEEEEECCSSEEEHHHHHHHHC------SCCHHHHHHHHHHHHHHHHHHHHH---TEECCCCSGGGEEE
T ss_pred Eec-----CCeEEEEEEecCCCCCHHHHHHhcC------CCCHHHHHHHHHHHHHHHHHHHHC---CeeecCCChhhEEE
Confidence 654 3567899999 78999999998754 389999999999999999999999 99999999999999
Q ss_pred C-CCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCC-CCcccchHHHHHHHHHHhCCCCCccc
Q 047768 846 D-HDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEA-SMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 846 ~-~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~-~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
+ .++.+||+|||+++...... .....||..|+|||++.+..+ +.++||||+|+++|||++|+.||...
T Consensus 173 ~~~~~~~kl~dfg~~~~~~~~~----------~~~~~~~~~y~aPE~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~ 242 (312)
T 2iwi_A 173 DLRRGCAKLIDFGSGALLHDEP----------YTDFDGTRVYSPPEWISRHQYHALPATVWSLGILLYDMVCGDIPFERD 242 (312)
T ss_dssp ETTTTEEEECCCSSCEECCSSC----------BCCCCSCTTTSCHHHHHHSCBCHHHHHHHHHHHHHHHHHHSSCSCCSH
T ss_pred eCCCCeEEEEEcchhhhcccCc----------ccccCCcccccCceeeecCCCCCccchHHHHHHHHHHHHHCCCCCCCh
Confidence 9 88999999999998765421 223568999999999877666 45899999999999999999999632
Q ss_pred ccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 924 FNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 924 ~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
...... ... .+ .....++.+++.+|++.||++|||++|+++
T Consensus 243 -------~~~~~~------------~~~-~~-----------~~~~~~~~~li~~~l~~~p~~Rps~~e~l~ 283 (312)
T 2iwi_A 243 -------QEILEA------------ELH-FP-----------AHVSPDCCALIRRCLAPKPSSRPSLEEILL 283 (312)
T ss_dssp -------HHHHHT------------CCC-CC-----------TTSCHHHHHHHHHHTCSSTTTSCCHHHHHH
T ss_pred -------HHHhhh------------ccC-Cc-----------ccCCHHHHHHHHHHccCChhhCcCHHHHhc
Confidence 111110 000 00 012235779999999999999999999986
No 278
>3coi_A Mitogen-activated protein kinase 13; P38D, P38delta, ERK, MAP kinase, PMK, STK26, stress-activated protein kinase, structural genomics, PSI; 2.09A {Homo sapiens}
Probab=100.00 E-value=4.5e-35 Score=329.87 Aligned_cols=269 Identities=20% Similarity=0.234 Sum_probs=196.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--chHHHHHHHHHHHhcCCCCcceEEeeeecccc-CCCc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--GSKSFAAECEALRSIRHRNLIKIVTICSSIDF-KGVD 776 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~-~~~~ 776 (1009)
.++|.+.+.||+|+||.||+|.++.+|+.||||++...... ..+.+.+|+.++++++||||+++++++..... ....
T Consensus 23 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~~~~~~~~~~~~~~E~~~l~~l~h~~iv~~~~~~~~~~~~~~~~ 102 (353)
T 3coi_A 23 PKTYVSPTHVGSGAYGSVCSAIDKRSGEKVAIKKLSRPFQSEIFAKRAYRELLLLKHMQHENVIGLLDVFTPASSLRNFY 102 (353)
T ss_dssp ETTEEEEEEEEECSSEEEEEEEETTTTEEEEEEEESSTTSSHHHHHHHHHHHHHHHHCCCTTBCCCSEEECSCSSGGGCC
T ss_pred CceEEEeeeEecCCCeEEEEEEECCCCCEEEEEEecccccchHHHHHHHHHHHHHHhcCCCCcccHhheEecccccccce
Confidence 35788999999999999999999989999999999643222 24578899999999999999999999765311 1123
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..++||||++ ++|.+++.. .+++.++..++.|++.||+|||++ +|+||||||+||+++.++.+||+||
T Consensus 103 ~~~lv~e~~~-~~l~~~~~~--------~~~~~~~~~i~~qi~~al~~LH~~---~ivH~dlkp~NIl~~~~~~~kl~Df 170 (353)
T 3coi_A 103 DFYLVMPFMQ-TDLQKIMGL--------KFSEEKIQYLVYQMLKGLKYIHSA---GVVHRDLKPGNLAVNEDCELKILDF 170 (353)
T ss_dssp CCEEEEECCS-EEGGGTTTS--------CCCHHHHHHHHHHHHHHHHHHHHT---TCCCSSCCGGGEEECTTCCEEECST
T ss_pred eEEEEecccc-CCHHHHhcC--------CCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEeECCCCcEEEeec
Confidence 4589999997 688877643 288999999999999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCC-CCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-GEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
|+++..... .....||+.|+|||++.+ ..++.++||||+||++|||++|+.||....... .......
T Consensus 171 g~~~~~~~~-----------~~~~~~t~~y~aPE~~~~~~~~~~~~Di~slG~il~el~~g~~pf~~~~~~~-~~~~i~~ 238 (353)
T 3coi_A 171 GLARHADAE-----------MTGYVVTRWYRAPEVILSWMHYNQTVDIWSVGCIMAEMLTGKTLFKGKDYLD-QLTQILK 238 (353)
T ss_dssp TCTTC-------------------CCSBCCSCHHHHSCCSCCCTTHHHHHHHHHHHHHHHSSCSSBSSCHHH-HHHHHHH
T ss_pred ccccCCCCC-----------ccccccCcCcCCHHHHhCcCCCCchhhHHHHHHHHHHHHhCCCCCCCCCHHH-HHHHHHH
Confidence 999864321 223568999999999877 678999999999999999999999997532211 1111111
Q ss_pred Hhc--cchhhhccCC--------CCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 936 RAL--PEKVMEIVDP--------SLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 936 ~~~--~~~~~~~~d~--------~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
... +......+.. .+...+.. . ..........++.+++.+|++.||++|||++|+++
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~~~~~~~~li~~~L~~dp~~Rpt~~e~l~ 305 (353)
T 3coi_A 239 VTGVPGTEFVQKLNDKAAKSYIQSLPQTPRK--D-FTQLFPRASPQAADLLEKMLELDVDKRLTAAQALT 305 (353)
T ss_dssp HHCBCCHHHHTTCSCHHHHHHHHTSCBCSSC--C-TTTTCTTSCHHHHHHHHHHSCSCTTTSCCHHHHHT
T ss_pred HhCCCCHHHHHHHhhHHHHHHHHhCcCCCCc--c-HHHhcCCcCHHHHHHHHHHcCCCcccCCCHHHHhc
Confidence 100 0000000000 00000000 0 00011123456889999999999999999999975
No 279
>2eu9_A Dual specificity protein kinase CLK3; kinase domain, transferase; 1.53A {Homo sapiens} PDB: 2wu6_A* 2wu7_A* 3raw_A* 2exe_A 3nr9_A*
Probab=100.00 E-value=3.4e-35 Score=331.42 Aligned_cols=270 Identities=19% Similarity=0.266 Sum_probs=199.5
Q ss_pred hccCccCCcccccCCceEEEEEEecCC-eEEEEEEeecccccchHHHHHHHHHHHhcCCCC------cceEEeeeecccc
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENG-MLVAVKVINLEQKGGSKSFAAECEALRSIRHRN------LIKIVTICSSIDF 772 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~-~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n------iv~l~~~~~~~~~ 772 (1009)
.++|.+.+.||+|+||+||+|.++.++ +.||||+++... ...+.+.+|++++++++|++ ++.+.+++..
T Consensus 18 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~~vavK~~~~~~-~~~~~~~~E~~~l~~l~~~~~~~~~~~~~~~~~~~~--- 93 (355)
T 2eu9_A 18 QERYEIVGNLGEGTFGKVVECLDHARGKSQVALKIIRNVG-KYREAARLEINVLKKIKEKDKENKFLCVLMSDWFNF--- 93 (355)
T ss_dssp TTTEEEEEEEEEETTEEEEEEEETTTTTEEEEEEEECSCH-HHHHHHHHHHHHHHHHHHHCTTSCSCBCCEEEEEEE---
T ss_pred cccEEEEEEeeccCCeEEEEEEecCCCceEEEEEEEcccc-cchhHHHHHHHHHHHHhhcCCCCceeEEEeeeeeee---
Confidence 368999999999999999999997666 799999996432 23467888999999997666 8888887654
Q ss_pred CCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceee-------
Q 047768 773 KGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLL------- 845 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill------- 845 (1009)
....++||||+ ++++.+++..... ..+++.+++.++.|++.||+|||++ +|+||||||+||++
T Consensus 94 --~~~~~lv~e~~-~~~l~~~l~~~~~----~~~~~~~~~~i~~qi~~~L~~lH~~---~ivH~Dlkp~NIll~~~~~~~ 163 (355)
T 2eu9_A 94 --HGHMCIAFELL-GKNTFEFLKENNF----QPYPLPHVRHMAYQLCHALRFLHEN---QLTHTDLKPENILFVNSEFET 163 (355)
T ss_dssp --TTEEEEEEECC-CCBHHHHHHHTTT----CCCCHHHHHHHHHHHHHHHHHHHTT---TEECCCCCGGGEEESCCCEEE
T ss_pred --CCeEEEEEecc-CCChHHHHHhccC----CCCCHHHHHHHHHHHHHHHHHHHHC---CcccCCCCHHHEEEecccccc
Confidence 36789999999 7788888776542 2489999999999999999999999 99999999999999
Q ss_pred ------------CCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHH
Q 047768 846 ------------DHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEI 913 (1009)
Q Consensus 846 ------------~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~el 913 (1009)
+.++.+||+|||+++..... .....||+.|+|||++.+..++.++|||||||++|||
T Consensus 164 ~~~~~~~~~~~~~~~~~~kl~Dfg~~~~~~~~-----------~~~~~gt~~y~aPE~~~~~~~~~~~Di~slG~il~el 232 (355)
T 2eu9_A 164 LYNEHKSCEEKSVKNTSIRVADFGSATFDHEH-----------HTTIVATRHYRPPEVILELGWAQPCDVWSIGCILFEY 232 (355)
T ss_dssp EECCC-CCCEEEESCCCEEECCCTTCEETTSC-----------CCSSCSCGGGCCHHHHTTCCCCTHHHHHHHHHHHHHH
T ss_pred cccccccccccccCCCcEEEeecCcccccccc-----------ccCCcCCCcccCCeeeecCCCCCccchHHHHHHHHHH
Confidence 56789999999999864332 1235689999999999999999999999999999999
Q ss_pred HhCCCCCcccccCCccHHHHHH--HhccchhhhccCC---------CCCCh-hhh--------hhhccccccHHHHHHHH
Q 047768 914 FTRRRPTESMFNEGLTLHEFAK--RALPEKVMEIVDP---------SLLPL-EEE--------RTNSRRVRNEECLVAVI 973 (1009)
Q Consensus 914 ltg~~p~~~~~~~~~~~~~~~~--~~~~~~~~~~~d~---------~l~~~-~~~--------r~~~~~~~~~~~~~~l~ 973 (1009)
++|+.||....... ....... ...+.....-... .+... ... ..............++.
T Consensus 233 ~~g~~pf~~~~~~~-~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 311 (355)
T 2eu9_A 233 YRGFTLFQTHENRE-HLVMMEKILGPIPSHMIHRTRKQKYFYKGGLVWDENSSDGRYVKENCKPLKSYMLQDSLEHVQLF 311 (355)
T ss_dssp HHSSCSCCCSSHHH-HHHHHHHHHCCCCHHHHHHCSCGGGEETTEECCCTTSHHHHHHHHHCCCGGGGCSCCSHHHHHHH
T ss_pred HhCCCCCCCCCHHH-HHHHHHHHcCCCcHHHhhhccchhhhcccccccccccchhccccccCCcccccccccchhHHHHH
Confidence 99999997533211 0111111 1111111100000 00000 000 00001112234456789
Q ss_pred HHHhhccCCCCCCCCCHHHHHH
Q 047768 974 KTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 974 ~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
+++.+|++.||++|||++|+++
T Consensus 312 ~li~~~L~~dP~~Rpt~~e~l~ 333 (355)
T 2eu9_A 312 DLMRRMLEFDPAQRITLAEALL 333 (355)
T ss_dssp HHHHHHTCSSTTTSCCHHHHTT
T ss_pred HHHHHHhcCChhhCcCHHHHhc
Confidence 9999999999999999999974
No 280
>3qa8_A MGC80376 protein; kinase ubiquitin-like domain, phosphorylation, kinase domain ubiquitin-like domain, kinase, substrate binding; 3.60A {Xenopus laevis} PDB: 3qad_A* 3rzf_A*
Probab=100.00 E-value=1e-35 Score=351.72 Aligned_cols=273 Identities=21% Similarity=0.305 Sum_probs=200.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccc-ccchHHHHHHHHHHHhcCCCCcceEEeeeeccc-cCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQ-KGGSKSFAAECEALRSIRHRNLIKIVTICSSID-FKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~-~~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~-~~~~~~ 777 (1009)
.++|.+.+.||+|+||+||+|.+..+|+.||||+++... ....+.+.+|++++++++||||+++++++.... +.....
T Consensus 13 ~grY~i~~~LG~G~fG~Vyla~~~~tg~~VAVKvi~~~~~~~~~~~~~~Ei~iL~~L~HpnIV~l~~v~~~~~~~~~~~~ 92 (676)
T 3qa8_A 13 CGPWEMKERLGTGGFGYVLRWIHQDTGEQVAIKQCRQELSPKNRERWCLEIQIMKKLNHPNVVSAREVPDGLQKLAPNDL 92 (676)
T ss_dssp ----CCCCCCCBCSSSBCCCCCCTTTTCCEEECCCCSCCCHHHHHHHHHHHHHHHHCCBTTBCCEEECCTTTCCCCTTSS
T ss_pred CCCeEEEEEEeeCCCeEEEEEEECCCCcEEEEEEecccCCHHHHHHHHHHHHHHHhCCCCCCCceeeeecccccccCCCe
Confidence 468999999999999999999998899999999986442 223467889999999999999999999875421 223567
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCc---eEEe
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMV---AHVS 854 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~---~kl~ 854 (1009)
.++||||+++|+|.+++...... ..+++..++.++.+++.||+|||+. +|+||||||+||+++.++. +||+
T Consensus 93 ~~LVmEy~~ggsL~~~L~~~~~~---~~lse~~i~~I~~QLl~aL~yLHs~---gIVHrDLKP~NILl~~~g~~~~vKL~ 166 (676)
T 3qa8_A 93 PLLAMEYCEGGDLRKYLNQFENC---CGLKEGPIRTLLSDISSALRYLHEN---RIIHRDLKPENIVLQPGPQRLIHKII 166 (676)
T ss_dssp CCCEEECCSSCBHHHHHHSSSCT---TCCCSSHHHHHHHHHHHHHHHHHHT---TBCCCCCCSTTEEEECCSSSCEEEEC
T ss_pred EEEEEEeCCCCCHHHHHHhcccC---CCCCHHHHHHHHHHHHHHHHHHHHC---CCccCCCCHHHeEeecCCCceeEEEc
Confidence 79999999999999999875431 2388889999999999999999999 9999999999999997764 9999
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHH
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFA 934 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~ 934 (1009)
|||+++...... ......||+.|+|||++.+..++.++|||||||++|||++|+.||..... ...|.
T Consensus 167 DFG~a~~~~~~~---------~~~~~~gt~~Y~APE~l~~~~~s~ksDIwSLGviLyeLltG~~Pf~~~~~----~~~~~ 233 (676)
T 3qa8_A 167 DLGYAKELDQGE---------LCTEFVGTLQYLAPELLEQKKYTVTVDYWSFGTLAFECITGFRPFLPNWQ----PVQWH 233 (676)
T ss_dssp SCCCCCBTTSCC---------CCCCCCSCCTTCSSCSSCCSCCSTTHHHHHHHHHHHHHHSSCSSCCSSCH----HHHSS
T ss_pred cccccccccccc---------ccccccCCcccCChHHhccCCCCchhHHHHHHHHHHHHHHCCCCCCcccc----hhhhh
Confidence 999998765432 22345789999999999999999999999999999999999999964211 11111
Q ss_pred HHhccch-----hhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHH
Q 047768 935 KRALPEK-----VMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDV 993 (1009)
Q Consensus 935 ~~~~~~~-----~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~ev 993 (1009)
....... ..+......... ................+.+++.+|++.||++|||++|+
T Consensus 234 ~~i~~~~~~~~~~~~~l~g~~~~~--~~lp~p~~l~~~ls~~L~dLI~~mL~~DP~kRPTa~el 295 (676)
T 3qa8_A 234 GKVREKSNEHIVVYDDLTGAVKFS--SVLPTPNHLSGILAGKLERWLQCMLMWHQRQRGTDPQN 295 (676)
T ss_dssp TTCC------CCSCCCCSSSCCCC--SSSCCSCCCCGGGHHHHHHHHHHHSCSSCC---CCTTC
T ss_pred hhhhcccchhhhhhhhhccccccc--cccCCchhhchhhhHHHHHHHHHHccCCHhhCcCHHHH
Confidence 0000000 001111111000 00001111223456678999999999999999999884
No 281
>2dyl_A Dual specificity mitogen-activated protein kinase kinase 7; MKK7, activated mutant, ATP-binding, structural genomics, NPPSFA; 2.45A {Homo sapiens}
Probab=100.00 E-value=3.5e-35 Score=325.89 Aligned_cols=253 Identities=21% Similarity=0.276 Sum_probs=179.0
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccc--hHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGG--SKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~--~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.++|.+.+.||+|+||.||+|+++.+|+.||||++....... .+.+.++..+++.++||||+++++++... ..
T Consensus 24 ~~~y~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~~~~~~~~~~~~h~~i~~~~~~~~~~-----~~ 98 (318)
T 2dyl_A 24 INDLENLGEMGSGTCGQVWKMRFRKTGHVIAVKQMRRSGNKEENKRILMDLDVVLKSHDCPYIVQCFGTFITN-----TD 98 (318)
T ss_dssp GGGEEEEEEC------CEEEEEETTTCCEEEEEEEETTSCHHHHHHHHHHHHHHHHTTTCTTBCCEEEEEECS-----SE
T ss_pred hccccccceeeecCCeeEEEEEEecCCeEEEEEEecccccchHHHHHHHHHHHHHHhcCCCceeeEEEEEecC-----Cc
Confidence 467889999999999999999999899999999997543221 23344555677888999999999997643 67
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhh-cCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHH-HCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~-~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
.++||||+ ++.+..+...... .+++..++.++.|++.||.|||+ . +|+||||||+||+++.++.+||+||
T Consensus 99 ~~lv~e~~-~~~~~~l~~~~~~-----~~~~~~~~~~~~~i~~~l~~lH~~~---~i~H~dlkp~Nil~~~~~~~kl~df 169 (318)
T 2dyl_A 99 VFIAMELM-GTCAEKLKKRMQG-----PIPERILGKMTVAIVKALYYLKEKH---GVIHRDVKPSNILLDERGQIKLCDF 169 (318)
T ss_dssp EEEEECCC-SEEHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHHH---CCCCCCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEecc-CCcHHHHHHHhcc-----CCCHHHHHHHHHHHHHHHHHHHhhC---CEEeCCCCHHHEEECCCCCEEEEEC
Confidence 89999999 5566666554332 38999999999999999999998 5 8999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccC-----CCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHH
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL-----GGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLH 931 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~-----~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~ 931 (1009)
|+++...... ......||+.|+|||++. ...++.++|||||||++|||++|+.||...... .
T Consensus 170 g~~~~~~~~~---------~~~~~~~~~~y~aPE~~~~~~~~~~~~~~~~Di~slG~il~~l~~g~~pf~~~~~~----~ 236 (318)
T 2dyl_A 170 GISGRLVDDK---------AKDRSAGCAAYMAPERIDPPDPTKPDYDIRADVWSLGISLVELATGQFPYKNCKTD----F 236 (318)
T ss_dssp TTC-----------------------CCTTCCHHHHC--------CCTHHHHHHHHHHHHHHHHSSCTTTTCCSH----H
T ss_pred CCchhccCCc---------cccccCCCccccChhhcccccccccCCccccchhhHHHHHHHHHhCCCCCCCCCcc----H
Confidence 9997654321 122346899999999984 567889999999999999999999999743221 1
Q ss_pred HHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 932 EFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 932 ~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
.......... .+.+.. ...+..++.+++.+||+.||.+||+++|+++.
T Consensus 237 ~~~~~~~~~~-----~~~~~~------------~~~~~~~l~~li~~~l~~dp~~Rps~~~ll~h 284 (318)
T 2dyl_A 237 EVLTKVLQEE-----PPLLPG------------HMGFSGDFQSFVKDCLTKDHRKRPKYNKLLEH 284 (318)
T ss_dssp HHHHHHHHSC-----CCCCCS------------SSCCCHHHHHHHHHHTCSCTTTSCCHHHHTTS
T ss_pred HHHHHHhccC-----CCCCCc------------cCCCCHHHHHHHHHHccCChhHCcCHHHHhhC
Confidence 1111111000 000000 00123457899999999999999999999873
No 282
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=100.00 E-value=1.7e-35 Score=326.59 Aligned_cols=256 Identities=30% Similarity=0.469 Sum_probs=178.5
Q ss_pred ceEEEcCCCcccc--CCCccccCcCccCEEEccC-CCCCCCCCCCcCCcccccceecccccccCCCCccccccccccccc
Q 047768 370 LIDFNLGKNQIYG--TIPPGIANLVNLNSLRMEA-NRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLS 446 (1009)
Q Consensus 370 L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 446 (1009)
++.|+|++|.+++ .+|..|.++++|++|+|++ |.+.+.+|..|+.+++|++|+|++|++++.+|..|.++++|++|+
T Consensus 52 l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~ 131 (313)
T 1ogq_A 52 VNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTLD 131 (313)
T ss_dssp EEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEEE
T ss_pred EEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEEe
Confidence 3344444444444 3444444444444444442 444444444444444444444444444444444444444444444
Q ss_pred ccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccC
Q 047768 447 FGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFS 526 (1009)
Q Consensus 447 L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 526 (1009)
+++|++++.+|..+..+++|++|++++|++++.+|..+.........|++++|++++.+|..+..++ |++|++++|+++
T Consensus 132 Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls~N~l~ 210 (313)
T 1ogq_A 132 FSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLSRNMLE 210 (313)
T ss_dssp CCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECCSSEEE
T ss_pred CCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECcCCccc
Confidence 4444444444444444444444445555444444444444432333477788888778888888887 999999999999
Q ss_pred CCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcccCCCCCc
Q 047768 527 GQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGI 606 (1009)
Q Consensus 527 ~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~ 606 (1009)
+.+|..+..+++|+.|+|++|++++.+|. +..+++|++|+|++|++++.+|..+..+++|++|+|++|+++|.+|..+.
T Consensus 211 ~~~~~~~~~l~~L~~L~L~~N~l~~~~~~-~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~ip~~~~ 289 (313)
T 1ogq_A 211 GDASVLFGSDKNTQKIHLAKNSLAFDLGK-VGLSKNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLCGEIPQGGN 289 (313)
T ss_dssp ECCGGGCCTTSCCSEEECCSSEECCBGGG-CCCCTTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEEEECCCSTT
T ss_pred CcCCHHHhcCCCCCEEECCCCceeeecCc-ccccCCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCcccccCCCCcc
Confidence 99999999999999999999999977776 88899999999999999999999999999999999999999999999888
Q ss_pred ccCccccccccCCCcCCCCCC
Q 047768 607 FKNKTGFSIVGNGKLCGGLDE 627 (1009)
Q Consensus 607 ~~~~~~~~~~~n~~lc~~~~~ 627 (1009)
+.++....+.+|+++||.|.+
T Consensus 290 l~~L~~l~l~~N~~lc~~p~~ 310 (313)
T 1ogq_A 290 LQRFDVSAYANNKCLCGSPLP 310 (313)
T ss_dssp GGGSCGGGTCSSSEEESTTSS
T ss_pred ccccChHHhcCCCCccCCCCC
Confidence 888888999999999997654
No 283
>2rio_A Serine/threonine-protein kinase/endoribonuclease IRE1; protein-nucleotide complex, ATP-binding, endoplasmic reticulum, glycoprotein; HET: ADP; 2.40A {Saccharomyces cerevisiae} PDB: 3lj0_A* 3lj1_A* 3lj2_A* 3fbv_A* 3sdm_A* 3sdj_A*
Probab=100.00 E-value=9.4e-35 Score=335.73 Aligned_cols=257 Identities=20% Similarity=0.230 Sum_probs=183.7
Q ss_pred cCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCceEEE
Q 047768 702 EFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVDFKAL 780 (1009)
Q Consensus 702 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~~~~l 780 (1009)
.|.+.+.||+|+||+||.+.. .+|+.||||++... ..+.+.+|+++++++ +||||+++++++.. ....++
T Consensus 16 ~~~~~~~LG~G~~g~V~~~~~-~~g~~vAvK~~~~~---~~~~~~~E~~~l~~l~~HpnIv~~~~~~~~-----~~~~~l 86 (434)
T 2rio_A 16 LVVSEKILGYGSSGTVVFQGS-FQGRPVAVKRMLID---FCDIALMEIKLLTESDDHPNVIRYYCSETT-----DRFLYI 86 (434)
T ss_dssp CEEEEEEEEECSTTCEEEEEE-SSSSEEEEEEEEGG---GHHHHHHHHHHHHHHTTSTTBCCEEEEEEC-----SSEEEE
T ss_pred eeeccCeEeeCCCeEEEEEEE-ECCeEEEEEEEcHH---HHHHHHHHHHHHHhccCCCCcCeEEEEEec-----CCeEEE
Confidence 455568899999999987543 57999999998643 245678999999987 89999999998654 367899
Q ss_pred EEeccCCCCHHHHHhccCCCCCc-cCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCC-----------
Q 047768 781 VYEYMQNGSLEEWLHQRDDQLGI-CNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHD----------- 848 (1009)
Q Consensus 781 v~e~~~~gsL~~~l~~~~~~~~~-~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~----------- 848 (1009)
||||+. |+|.+++......... ...++..++.++.|++.||+|||++ +||||||||+||+++.+
T Consensus 87 v~E~~~-gsL~~~l~~~~~~~~~~~~~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDLkp~NILl~~~~~~~~~~~~~~ 162 (434)
T 2rio_A 87 ALELCN-LNLQDLVESKNVSDENLKLQKEYNPISLLRQIASGVAHLHSL---KIIHRDLKPQNILVSTSSRFTADQQTGA 162 (434)
T ss_dssp EECCCS-EEHHHHHHTC------------CCHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEEECCHHHHSCCTTCC
T ss_pred EEecCC-CCHHHHHhccCCCchhhhhccchhHHHHHHHHHHHHHHHHHC---CccccCCChHhEEEecCcccccccccCC
Confidence 999995 6999999875432110 1113345678999999999999999 99999999999999754
Q ss_pred --CceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC-------CCCCCcccchHHHHHHHHHHh-CCC
Q 047768 849 --MVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG-------GEASMRGGVYSYGILLLEIFT-RRR 918 (1009)
Q Consensus 849 --~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~-------~~~~~~~DvwS~Gvvl~ellt-g~~ 918 (1009)
+.+||+|||+++........ .........||+.|+|||++.+ ..++.++|||||||++|||++ |+.
T Consensus 163 ~~~~~kL~DFG~a~~~~~~~~~----~~~~~~~~~gt~~y~aPE~~~~~~~~~~~~~~~~~~DiwSlG~il~ellt~g~~ 238 (434)
T 2rio_A 163 ENLRILISDFGLCKKLDSGQSS----FRTNLNNPSGTSGWRAPELLEESNNLQTKRRLTRSIDIFSMGCVFYYILSKGKH 238 (434)
T ss_dssp CSCEEEECCCTTCEECCC------------------CCTTSCHHHHSCCCTTSCCCCCCTHHHHHHHHHHHHHHHTTSCC
T ss_pred CceEEEEcccccceecCCCCcc----ceeeecCCCCCCCccCHHHhccccccccccCcchhhhhHhHHHHHHHHHhCCCC
Confidence 48999999999877543210 0011234579999999999876 678999999999999999999 999
Q ss_pred CCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 919 PTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 919 p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
||...... ........ .+.. . ...........++.+++.+|++.||++|||+.|+++
T Consensus 239 Pf~~~~~~---~~~i~~~~--------~~~~--~-------~~~~~~~~~~~~~~~li~~~L~~dP~~Rps~~eil~ 295 (434)
T 2rio_A 239 PFGDKYSR---ESNIIRGI--------FSLD--E-------MKCLHDRSLIAEATDLISQMIDHDPLKRPTAMKVLR 295 (434)
T ss_dssp TTCSTTTH---HHHHHHTC--------CCCC--C-------CTTCCCHHHHHHHHHHHHHHTCSSGGGSCCHHHHHT
T ss_pred CCCCchhh---HHHHhcCC--------CCcc--c-------ccccccccchHHHHHHHHHHhhCChhhCCCHHHHHh
Confidence 99643211 11111110 0000 0 001112345567889999999999999999999985
No 284
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=100.00 E-value=1.5e-35 Score=328.91 Aligned_cols=274 Identities=23% Similarity=0.275 Sum_probs=210.6
Q ss_pred cCChhhHHHHHHHHHhc-CCCCCCCCCCcc--CCCCCCCCCccceeeCC--------CCCeEEEEEeecCCcccccCccc
Q 047768 22 LSNETDCLSLLAIKSQL-HDPLGVTSSWNR--SACVNLCQHWTGVTCGR--------RNQRVTKLDLRNQSIGGILSPYV 90 (1009)
Q Consensus 22 ~~~~~d~~aLl~~k~~~-~~~~~~~~sW~~--~~~~~~c~~w~gv~C~~--------~~~~v~~l~l~~~~l~~~~~~~~ 90 (1009)
.+..+|+.||++||+++ .||.+.+++|.. ....++| .|.||.|+. ...+|+.|+|++++++ .+|+.+
T Consensus 23 ~~~~~~~~aLl~~k~~~~~~~~~~~~~w~~~~~~~~~~~-~~~g~~~~~~~~~l~~~~~~~l~~L~L~~n~l~-~lp~~l 100 (328)
T 4fcg_A 23 TALRPYHDVLSQWQRHYNADRNRWHSAWRQANSNNPQIE-TRTGRALKATADLLEDATQPGRVALELRSVPLP-QFPDQA 100 (328)
T ss_dssp CCCCCHHHHHHHHHHHHHHCCTTHHHHHHHHTTTCTTSC-CSHHHHHHHHHHHHHHHTSTTCCEEEEESSCCS-SCCSCG
T ss_pred ccCchHHHHHHHHHHhccCCchhhhhhhccccccccccc-ccCCcchhhhHHHHhcccccceeEEEccCCCch-hcChhh
Confidence 35578999999999997 678777889941 1123445 799999952 3468999999999998 778889
Q ss_pred cCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhh------
Q 047768 91 GNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELIS------ 164 (1009)
Q Consensus 91 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~------ 164 (1009)
+.+++|++|+|++|.++ .+|..|+++++|++|+|++|.++ .+|..++++++|++|++++|++.+.+|..+..
T Consensus 101 ~~l~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~L~~n~~~~~~p~~~~~~~~~~~ 178 (328)
T 4fcg_A 101 FRLSHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELSIRACPELTELPEPLASTDASGE 178 (328)
T ss_dssp GGGTTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEEEEEETTCCCCCSCSEEEC-CCC
T ss_pred hhCCCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEECCCCCCccccChhHhhccchhh
Confidence 99999999999999999 99999999999999999999999 88999999999999999999999999887631
Q ss_pred -hccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHH
Q 047768 165 -RRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLV 243 (1009)
Q Consensus 165 -~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 243 (1009)
..+.+|++|+|++|+++ .+|..++++++|++|+|++|++++ +|..|..+++|++|+|++|++.+.+|..+.++++|+
T Consensus 179 ~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~ 256 (328)
T 4fcg_A 179 HQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLK 256 (328)
T ss_dssp EEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCC
T ss_pred hccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCC
Confidence 23677777777777777 667777777777777777777764 455677777777777777777777777777777777
Q ss_pred HHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccc
Q 047768 244 EIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFR 302 (1009)
Q Consensus 244 ~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 302 (1009)
+|+|++|++.+.+|..+ .++++|++|+|++|++.+.+|..|.++++|+.+++..|.+.
T Consensus 257 ~L~L~~n~~~~~~p~~~-~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 257 RLILKDCSNLLTLPLDI-HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp EEECTTCTTCCBCCTTG-GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred EEECCCCCchhhcchhh-hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHHHH
Confidence 77777666666666554 34666666666666666666666666666666666655544
No 285
>3p23_A Serine/threonine-protein kinase/endoribonuclease; kinase domain, kinase and RNAse function, ATP binding ssRNA dephosphorylated, hydrolase; HET: ADP; 2.70A {Homo sapiens}
Probab=100.00 E-value=1.5e-34 Score=332.74 Aligned_cols=251 Identities=24% Similarity=0.296 Sum_probs=182.7
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCceE
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
..+|.+.+.||+|+||+||... ..+++.||||++.... ...+.+|+++++++ +||||+++++++.. ....
T Consensus 23 ~~~y~~~~~LG~G~~G~V~~~~-~~~~~~vAvK~~~~~~---~~~~~~E~~~l~~l~~HpnIv~l~~~~~~-----~~~~ 93 (432)
T 3p23_A 23 KISFCPKDVLGHGAEGTIVYRG-MFDNRDVAVKRILPEC---FSFADREVQLLRESDEHPNVIRYFCTEKD-----RQFQ 93 (432)
T ss_dssp TEEEEEEEEEEECGGGCEEEEE-ESSSSEEEEEEECTTT---EEECHHHHHHHHHSCCCTTBCCEEEEEEE-----TTEE
T ss_pred cEEEecCCeeecCcCEEEEEEE-EeCCeEEEEEEECHHH---HHHHHHHHHHHHhccCCCCcCeEEEEEec-----CCEE
Confidence 3568888999999999966433 3478999999985432 23457899999999 89999999998654 3678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC-----CCceEE
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH-----DMVAHV 853 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~-----~~~~kl 853 (1009)
++||||+. |+|.+++...... ..+.+++.++.|++.||+|||+. +|+||||||+||+++. ...+||
T Consensus 94 ~lv~E~~~-g~L~~~l~~~~~~-----~~~~~~~~i~~qi~~aL~~LH~~---~ivHrDlKp~NIll~~~~~~~~~~~kL 164 (432)
T 3p23_A 94 YIAIELCA-ATLQEYVEQKDFA-----HLGLEPITLLQQTTSGLAHLHSL---NIVHRDLKPHNILISMPNAHGKIKAMI 164 (432)
T ss_dssp EEEEECCS-EEHHHHHHSSSCC-----CCSSCHHHHHHHHHHHHHHHHHT---TCCCCCCSTTSEEECCCBTTTBCCEEE
T ss_pred EEEEECCC-CCHHHHHHhcCCC-----ccchhHHHHHHHHHHHHHHHHHC---cCEeCCCCHHHEEEecCCCCCceeEEE
Confidence 99999995 6999999876532 44456678999999999999999 9999999999999953 236889
Q ss_pred eccccccccCCCCCCCccccCCccccccccccccCccccC---CCCCCCcccchHHHHHHHHHHh-CCCCCcccccCCcc
Q 047768 854 SDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGL---GGEASMRGGVYSYGILLLEIFT-RRRPTESMFNEGLT 929 (1009)
Q Consensus 854 ~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~---~~~~~~~~DvwS~Gvvl~ellt-g~~p~~~~~~~~~~ 929 (1009)
+|||+|+....... .........||+.|+|||++. ...++.++||||+||++|||++ |+.||......
T Consensus 165 ~DFG~a~~~~~~~~-----~~~~~~~~~gt~~y~APE~l~~~~~~~~t~~~DiwSlG~il~ellt~g~~pf~~~~~~--- 236 (432)
T 3p23_A 165 SDFGLCKKLAVGRH-----SFSRRSGVPGTEGWIAPEMLSEDCKENPTYTVDIFSAGCVFYYVISEGSHPFGKSLQR--- 236 (432)
T ss_dssp CCTTEEECC-----------------CCSCTTSCCGGGTSCC---CCCTHHHHHHHHHHHHHHHTTSCBTTBSTTTH---
T ss_pred ecccceeeccCCCc-----ceeeccccCCCcCccChhhhhcccccCCCcHHHHHHHHHHHHHHHcCCCCCcchhhHH---
Confidence 99999987654321 112233467999999999987 4567889999999999999999 89998632211
Q ss_pred HHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHH
Q 047768 930 LHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVV 995 (1009)
Q Consensus 930 ~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~ 995 (1009)
. ........... ... ........+.+++.+|++.||++|||+.||++
T Consensus 237 --~-~~~~~~~~~~~----~~~------------~~~~~~~~~~~li~~~L~~dP~~Rps~~evl~ 283 (432)
T 3p23_A 237 --Q-ANILLGACSLD----CLH------------PEKHEDVIARELIEKMIAMDPQKRPSAKHVLK 283 (432)
T ss_dssp --H-HHHHTTCCCCT----TSC------------TTCHHHHHHHHHHHHHSCSSGGGSCCHHHHHT
T ss_pred --H-HHHHhccCCcc----ccC------------ccccccHHHHHHHHHHHhCCHhhCCCHHHHHh
Confidence 0 00000000000 000 01123345779999999999999999999984
No 286
>3uqc_A Probable conserved transmembrane protein; structural genomics, TB structural genomics consortium, TBSG fold, FHAA, transferase; 2.26A {Mycobacterium tuberculosis} PDB: 3oun_B* 3otv_A 3ouk_A
Probab=100.00 E-value=6.3e-34 Score=309.50 Aligned_cols=235 Identities=11% Similarity=0.036 Sum_probs=183.0
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccc---hHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCce
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGG---SKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~---~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~ 777 (1009)
++|.+.+.||+|+||.||+|.+..+++.||||+++...... .+.+.+|++++++++||||+++++++... +.
T Consensus 31 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~vavK~~~~~~~~~~~~~~~~~~e~~~l~~l~hp~iv~~~~~~~~~-----~~ 105 (286)
T 3uqc_A 31 GRYRLLIFHGGVPPLQFWQALDTALDRQVALTFVDPQGVLPDDVLQETLSRTLRLSRIDKPGVARVLDVVHTR-----AG 105 (286)
T ss_dssp TTEEEEEEEEBSTTCEEEEEEETTTTEEEEEEESCTTCCSCHHHHHHHHHHHHHHHTCCCTTBCCEEEEEEET-----TE
T ss_pred CcEEEEEEEcccCCeEEEEEEecCCCceEEEEEECcccccCHHHHHHHHHHHHHHhcCCCCCcceeeEEEEEC-----Cc
Confidence 57999999999999999999999889999999997553322 36789999999999999999999997653 67
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.++||||+++++|.++++.. ....++..++.|++.||+|||++ +|+||||||+||+++.++.+||+++|
T Consensus 106 ~~lv~e~~~g~~L~~~l~~~--------~~~~~~~~i~~ql~~aL~~lH~~---givH~Dikp~NIll~~~g~~kl~~~~ 174 (286)
T 3uqc_A 106 GLVVAEWIRGGSLQEVADTS--------PSPVGAIRAMQSLAAAADAAHRA---GVALSIDHPSRVRVSIDGDVVLAYPA 174 (286)
T ss_dssp EEEEEECCCEEEHHHHHTTC--------CCHHHHHHHHHHHHHHHHHHHHT---TCCCCCCSGGGEEEETTSCEEECSCC
T ss_pred EEEEEEecCCCCHHHHHhcC--------CChHHHHHHHHHHHHHHHHHHHC---CCccCCCCcccEEEcCCCCEEEEecc
Confidence 89999999999999999542 34557889999999999999999 99999999999999999999998543
Q ss_pred cccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHh
Q 047768 858 LAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRA 937 (1009)
Q Consensus 858 la~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~ 937 (1009)
|++ .++.++|||||||++|||+||+.||.........
T Consensus 175 ----------------------------~~~-------~~~~~~Di~slG~il~elltg~~Pf~~~~~~~~~-------- 211 (286)
T 3uqc_A 175 ----------------------------TMP-------DANPQDDIRGIGASLYALLVNRWPLPEAGVRSGL-------- 211 (286)
T ss_dssp ----------------------------CCT-------TCCHHHHHHHHHHHHHHHHHSEECSCCCSBCCCS--------
T ss_pred ----------------------------ccC-------CCCchhHHHHHHHHHHHHHHCCCCCCcCCcchhh--------
Confidence 333 3688999999999999999999999754321100
Q ss_pred ccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHHHHHHHHhhh
Q 047768 938 LPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVKLCHARQNFL 1005 (1009)
Q Consensus 938 ~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~L~~i~~~~~ 1005 (1009)
......+...... +. ........++.+++.+||+.||++| |+.|+++.|+++.....
T Consensus 212 --~~~~~~~~~~~~~-~~-------~~~~~~~~~l~~li~~~l~~dP~~R-s~~el~~~L~~~~~~~~ 268 (286)
T 3uqc_A 212 --APAERDTAGQPIE-PA-------DIDRDIPFQISAVAARSVQGDGGIR-SASTLLNLMQQATAVAD 268 (286)
T ss_dssp --EECCBCTTSCBCC-HH-------HHCTTSCHHHHHHHHHHHCTTSSCC-CHHHHHHHHHHHHC---
T ss_pred --HHHHHHhccCCCC-hh-------hcccCCCHHHHHHHHHHcccCCccC-CHHHHHHHHHHHhccCC
Confidence 0000000000000 00 0011234568899999999999999 99999999998876543
No 287
>3m2w_A MAP kinase-activated protein kinase 2; small molecule inhibitor, spiroazetidine-tetracycle, ATP-SIT inhibitor, novartis compound NVP-BXS169; HET: L8I; 2.41A {Homo sapiens} PDB: 3kga_A* 3m42_A*
Probab=100.00 E-value=1.3e-33 Score=309.92 Aligned_cols=236 Identities=20% Similarity=0.308 Sum_probs=181.4
Q ss_pred ccCccC-CcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHH-HhcCCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSS-NTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEAL-RSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~-~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l-~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
++|.+. +.||+|+||.||+|.++.+++.||||+++. ...+.+|++++ +..+||||+++++++... ..+....
T Consensus 17 ~~y~~~~~~lg~G~~g~V~~~~~~~~~~~vaiK~~~~-----~~~~~~e~~~~~~~~~h~~i~~~~~~~~~~-~~~~~~~ 90 (299)
T 3m2w_A 17 DDYKVTSQVLGLGINGKVLQIFNKRTQEKFALKMLQD-----CPKARREVELHWRASQCPHIVRIVDVYENL-YAGRKCL 90 (299)
T ss_dssp GTEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEEEC-----SHHHHHHHHHHHHHTTSTTBCCEEEEEEEE-ETTEEEE
T ss_pred cchhhcCcccccCCCeEEEEEEEcCCCcEEEEEEecc-----cHHHHHHHHHHHHhccCCCchhHHhhhhhh-cCCCceE
Confidence 467666 779999999999999998999999999852 35678899988 555999999999987652 2334678
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCC---CCceEEec
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDH---DMVAHVSD 855 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~---~~~~kl~D 855 (1009)
++||||+++|+|.+++...... .+++.+++.++.|++.||.|||++ +|+||||||+||+++. ++.+||+|
T Consensus 91 ~lv~e~~~~~~L~~~l~~~~~~----~~~~~~~~~i~~qi~~~l~~lH~~---~i~H~dlkp~Nil~~~~~~~~~~kl~D 163 (299)
T 3m2w_A 91 LIVMECLDGGELFSRIQDRGDQ----AFTEREASEIMKSIGEAIQYLHSI---NIAHRDVKPENLLYTSKRPNAILKLTD 163 (299)
T ss_dssp EEEECCCCSCBHHHHHHHCTTC----CCBHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEESSSSTTCCEEECC
T ss_pred EEEEeecCCCcHHHHHHhccCC----CCCHHHHHHHHHHHHHHHHHHHhC---CcccCCCCHHHEEEecCCCCCcEEEec
Confidence 9999999999999999876432 489999999999999999999999 9999999999999998 78999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHH
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAK 935 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~ 935 (1009)
||+++... +..++.++||||+||++|||++|+.||.......
T Consensus 164 fg~a~~~~------------------------------~~~~~~~~DiwslG~il~el~tg~~pf~~~~~~~-------- 205 (299)
T 3m2w_A 164 FGFAKETT------------------------------GEKYDKSCDMWSLGVIMYILLCGYPPFYSNHGLA-------- 205 (299)
T ss_dssp CTTCEECT------------------------------TCGGGGHHHHHHHHHHHHHHHHSSCSCCC-------------
T ss_pred cccccccc------------------------------cccCCchhhHHHHHHHHHHHHHCCCCCCCCcchh--------
Confidence 99987432 2346789999999999999999999996432110
Q ss_pred HhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHHHH
Q 047768 936 RALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVVVK 996 (1009)
Q Consensus 936 ~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl~~ 996 (1009)
........+.......+.. ....+..++.+++.+|++.||++|||+.|+++.
T Consensus 206 --~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~li~~~l~~dP~~Rps~~e~l~h 257 (299)
T 3m2w_A 206 --ISPGMKTRIRMGQYEFPNP-------EWSEVSEEVKMLIRNLLKTEPTQRMTITEFMNH 257 (299)
T ss_dssp ----CCSCCSSCTTCCSSCHH-------HHTTSCHHHHHHHHHHTCSSTTTSCCHHHHHTS
T ss_pred --hhHHHHHHHhhccccCCch-------hcccCCHHHHHHHHHHcccChhhCCCHHHHhcC
Confidence 0000001110000000000 001234568899999999999999999999863
No 288
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=100.00 E-value=8.5e-34 Score=346.76 Aligned_cols=247 Identities=20% Similarity=0.285 Sum_probs=195.6
Q ss_pred ccCccCCcccccCCceEEEEEEec-CCeEEEEEEeecccc-cchHHHHHHHHHHHhcCCCCcceEEeeeeccccCCCceE
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHE-NGMLVAVKVINLEQK-GGSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~-~~~~vavK~~~~~~~-~~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
++|.+.+.||+|+||+||+|.++. +++.||||++..... .....+.+|++++++++||||+++++++......+....
T Consensus 80 ~~y~i~~~lg~G~~g~Vy~a~~~~~~~~~vaiK~~~~~~~~~~~~~~~~E~~~l~~l~hp~iv~~~~~~~~~~~~~~~~~ 159 (681)
T 2pzi_A 80 GQYEVKGCIAHGGLGWIYLALDRNVNGRPVVLKGLVHSGDAEAQAMAMAERQFLAEVVHPSIVQIFNFVEHTDRHGDPVG 159 (681)
T ss_dssp TTEEEEEEEEEETTEEEEEEEEGGGTTEEEEEEESCSSCCHHHHHHHHHHHGGGGGCCCTTBCCEEEEEEEECTTSCEEE
T ss_pred CceEEEEEEeeCCCeEEEEEEEcCCCCcEEEEEEeCccCCHHHHHHHHHHHHHHHhcCCCCcCeEeeeEeecCCCCCcee
Confidence 689999999999999999999975 789999999864322 234578899999999999999999999876533333346
Q ss_pred EEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecccc
Q 047768 779 ALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGL 858 (1009)
Q Consensus 779 ~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGl 858 (1009)
++||||+++++|.+++.. .+++.+++.++.|++.||.|||++ +||||||||+||+++.+ .+||+|||+
T Consensus 160 ~lv~E~~~g~~L~~~~~~--------~l~~~~~~~~~~qi~~aL~~lH~~---giiHrDlkp~NIll~~~-~~kl~DFG~ 227 (681)
T 2pzi_A 160 YIVMEYVGGQSLKRSKGQ--------KLPVAEAIAYLLEILPALSYLHSI---GLVYNDLKPENIMLTEE-QLKLIDLGA 227 (681)
T ss_dssp EEEEECCCCEECC----C--------CCCHHHHHHHHHHHHHHHHHHHHT---TEECCCCSGGGEEECSS-CEEECCCTT
T ss_pred EEEEEeCCCCcHHHHHhC--------CCCHHHHHHHHHHHHHHHHHHHHC---CCeecccChHHeEEeCC-cEEEEeccc
Confidence 999999999999987754 289999999999999999999999 99999999999999986 999999999
Q ss_pred ccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhc
Q 047768 859 AKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRAL 938 (1009)
Q Consensus 859 a~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~ 938 (1009)
++..... ....||+.|+|||++.+.. +.++|||||||++|||++|..||.......
T Consensus 228 a~~~~~~------------~~~~gt~~y~aPE~~~~~~-~~~sDi~slG~~l~~l~~g~~~~~~~~~~~----------- 283 (681)
T 2pzi_A 228 VSRINSF------------GYLYGTPGFQAPEIVRTGP-TVATDIYTVGRTLAALTLDLPTRNGRYVDG----------- 283 (681)
T ss_dssp CEETTCC------------SCCCCCTTTSCTTHHHHCS-CHHHHHHHHHHHHHHHHSCCCEETTEECSS-----------
T ss_pred chhcccC------------CccCCCccccCHHHHcCCC-CCceehhhhHHHHHHHHhCCCCCccccccc-----------
Confidence 9865432 2356899999999987654 889999999999999999988875321110
Q ss_pred cchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCCCCCCC-CHHHHHHHHHHHHHh
Q 047768 939 PEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIESPFDRM-EMTDVVVKLCHARQN 1003 (1009)
Q Consensus 939 ~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rp-t~~evl~~L~~i~~~ 1003 (1009)
.....+ .......+.+++.+|++.||++|| +++++...+..+.++
T Consensus 284 ----------~~~~~~----------~~~~~~~l~~li~~~l~~dP~~R~~~~~~l~~~l~~~~~~ 329 (681)
T 2pzi_A 284 ----------LPEDDP----------VLKTYDSYGRLLRRAIDPDPRQRFTTAEEMSAQLTGVLRE 329 (681)
T ss_dssp ----------CCTTCH----------HHHHCHHHHHHHHHHTCSSGGGSCSSHHHHHHHHHHHHHH
T ss_pred ----------cccccc----------ccccCHHHHHHHhhhccCChhhCCCHHHHHHHHHHHHHHH
Confidence 000000 112335678999999999999999 566777777766544
No 289
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.5e-33 Score=316.85 Aligned_cols=306 Identities=27% Similarity=0.406 Sum_probs=168.6
Q ss_pred cCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCc
Q 047768 91 GNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNL 170 (1009)
Q Consensus 91 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L 170 (1009)
..+++|++|++++|.++ .+|. +..+++|++|+|++|++++..+ +.++++|++|++++|.+++ +| .+ ..+++|
T Consensus 41 ~~l~~L~~L~l~~~~i~-~~~~-~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~-~~-~~--~~l~~L 112 (347)
T 4fmz_A 41 EELESITKLVVAGEKVA-SIQG-IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITD-IS-AL--QNLTNL 112 (347)
T ss_dssp HHHTTCSEEECCSSCCC-CCTT-GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-CG-GG--TTCTTC
T ss_pred hhcccccEEEEeCCccc-cchh-hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccC-ch-HH--cCCCcC
Confidence 34555666666666665 3443 5566666666666666653322 5566666666666665543 22 11 445566
Q ss_pred CeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCC
Q 047768 171 QGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGN 250 (1009)
Q Consensus 171 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 250 (1009)
++|++++|++++..+ +..+++|++|++++|.....++ .+..+++|++|++++|.+++..+ +..+++|++|++++|
T Consensus 113 ~~L~l~~n~i~~~~~--~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n 187 (347)
T 4fmz_A 113 RELYLNEDNISDISP--LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYN 187 (347)
T ss_dssp SEEECTTSCCCCCGG--GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTS
T ss_pred CEEECcCCcccCchh--hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCC
Confidence 666666666653322 5566666666666664433332 25666666666666666653222 555555555555555
Q ss_pred ccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCC
Q 047768 251 RFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAA 330 (1009)
Q Consensus 251 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~ 330 (1009)
+++ .++. +..+++|+.|++++|.+++..+ +..+++|++|++++|++++..+ +..+++|+.|++++|.+...
T Consensus 188 ~l~-~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~-- 258 (347)
T 4fmz_A 188 QIE-DISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI-- 258 (347)
T ss_dssp CCC-CCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--
T ss_pred ccc-cccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--
Confidence 555 3333 3345666666666666654433 5556666666666666554433 44444444444444443322
Q ss_pred CCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCC
Q 047768 331 NDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPH 410 (1009)
Q Consensus 331 ~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 410 (1009)
+.+..+++ |+.|++++|++++. +.+..+++|+.|++++|++++..|.
T Consensus 259 ------~~~~~l~~-------------------------L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~ 305 (347)
T 4fmz_A 259 ------NAVKDLTK-------------------------LKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDME 305 (347)
T ss_dssp ------GGGTTCTT-------------------------CCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHH
T ss_pred ------hhHhcCCC-------------------------cCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChh
Confidence 12333444 44444445544432 3455666777777777777666666
Q ss_pred CcCCcccccceecccccccCCCCcccccccccccccccCcccc
Q 047768 411 VIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQ 453 (1009)
Q Consensus 411 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 453 (1009)
.+..+++|++|+|++|++++..| +..+++|++|++++|.|+
T Consensus 306 ~l~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 306 VIGGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HHHTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred HhhccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 66677777777777777765544 666777777777777664
No 290
>3dzo_A Rhoptry kinase domain; parasitic disease, transferase, structural genomics, structural genomics consortium, SGC; 1.80A {Toxoplasma gondii}
Probab=100.00 E-value=9e-34 Score=325.25 Aligned_cols=251 Identities=17% Similarity=0.141 Sum_probs=182.3
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc---cchHHHHHHHHHHHhcCC-CCcceEE---------ee
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK---GGSKSFAAECEALRSIRH-RNLIKIV---------TI 766 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~---~~~~~~~~E~~~l~~l~h-~niv~l~---------~~ 766 (1009)
...|...+.||+|+||+||+|++..+|+.||||+++.... ...+.+.+|+.+++.++| +|..... ..
T Consensus 77 ~~~~~~~~~LG~G~fG~Vy~a~~~~~g~~vAvK~~~~~~~~~~~~~~~~~~E~~~~~~l~~~~~~~~~~~~~~~~~~~~~ 156 (413)
T 3dzo_A 77 PRTLVRGTVLGQEDPYAYLEATDQETGESFEVHVPYFTERPPSNAIKQMKEEVLRLRLLRGIKNQKQAKVHLRFIFPFDL 156 (413)
T ss_dssp CEEEEEEEEEEEETTEEEEEEEETTTCCEEEEEEECCSCC----CCHHHHHHHHGGGGSTTCCSHHHHHHHTCBCCCCEE
T ss_pred ceeEEEecccccCCCEEEEEEEecCCCCceEEEEEecCCCccHHHHHHHHHHHHHHHhhccCCCHHHHHHhcccccchhh
Confidence 3467778899999999999999999999999999873332 235789999999999987 3221111 11
Q ss_pred e------------eccccCCCceEEEEEeccCCCCHHHHHhccCC-CCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCc
Q 047768 767 C------------SSIDFKGVDFKALVYEYMQNGSLEEWLHQRDD-QLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPI 833 (1009)
Q Consensus 767 ~------------~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~-~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~i 833 (1009)
+ ...........+++|+++ +++|.++++.... ......+++..++.++.|++.||+|||++ +|
T Consensus 157 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~~ll~~l~~~~~~~~~l~~~~~~~i~~qi~~aL~~LH~~---~i 232 (413)
T 3dzo_A 157 VKDPQKKKMIRVRLDERDMWVLSRFFLYPRM-QSNLQTFGEVLLSHSSTHKSLVHHARLQLTLQVIRLLASLHHY---GL 232 (413)
T ss_dssp EECCC---------------CCSEEEEEECC-SEEHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHT---TE
T ss_pred cccCCCCccccccCCCccccccceEEEeehh-cCCHHHHHHHhhcccccCCCCCHHHHHHHHHHHHHHHHHHHhC---Cc
Confidence 1 100000123456777765 7899999852210 00012478889999999999999999999 99
Q ss_pred eecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCcccc----------CCCCCCCcccc
Q 047768 834 VHGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYG----------LGGEASMRGGV 903 (1009)
Q Consensus 834 vHrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~----------~~~~~~~~~Dv 903 (1009)
|||||||+|||++.++.+||+|||+++..... .....| +.|+|||++ .+..++.++||
T Consensus 233 iHrDiKp~NILl~~~~~~kL~DFG~a~~~~~~-----------~~~~~g-~~y~aPE~~~~~~~~~~~~~~~~~~~~~Dv 300 (413)
T 3dzo_A 233 VHTYLRPVDIVLDQRGGVFLTGFEHLVRDGAS-----------AVSPIG-RGFAPPETTAERMLPFGQHHPTLMTFAFDT 300 (413)
T ss_dssp ECSCCCGGGEEECTTCCEEECCGGGCEETTEE-----------ECCCCC-TTTCCHHHHHHHTSTTGGGCCEEECHHHHH
T ss_pred ccCCcccceEEEecCCeEEEEeccceeecCCc-----------cccCCC-CceeCchhhhccccccccccCcCCCchhhH
Confidence 99999999999999999999999999865421 233567 999999998 66678999999
Q ss_pred hHHHHHHHHHHhCCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhhhhhhccccccHHHHHHHHHHHhhccCCC
Q 047768 904 YSYGILLLEIFTRRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEEERTNSRRVRNEECLVAVIKTGVACSIES 983 (1009)
Q Consensus 904 wS~Gvvl~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~~r~~~~~~~~~~~~~~l~~l~~~cl~~d 983 (1009)
|||||++|||++|+.||....... ....++.... ..+.++.+++.+||+.|
T Consensus 301 wSlGvil~elltg~~Pf~~~~~~~-------------~~~~~~~~~~----------------~~~~~~~~li~~~l~~d 351 (413)
T 3dzo_A 301 WTLGLAIYWIWCADLPNTDDAALG-------------GSEWIFRSCK----------------NIPQPVRALLEGFLRYP 351 (413)
T ss_dssp HHHHHHHHHHHHSSCCCCTTGGGS-------------CSGGGGSSCC----------------CCCHHHHHHHHHHTCSS
T ss_pred HHHHHHHHHHHHCCCCCCCcchhh-------------hHHHHHhhcc----------------cCCHHHHHHHHHHccCC
Confidence 999999999999999997532211 0111111000 11245889999999999
Q ss_pred CCCCCCHHHHHH
Q 047768 984 PFDRMEMTDVVV 995 (1009)
Q Consensus 984 p~~Rpt~~evl~ 995 (1009)
|++||++.|+++
T Consensus 352 P~~Rpt~~~~l~ 363 (413)
T 3dzo_A 352 KEDRLLPLQAME 363 (413)
T ss_dssp GGGSCCHHHHTT
T ss_pred hhhCcCHHHHHh
Confidence 999999877754
No 291
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=100.00 E-value=7.1e-34 Score=342.76 Aligned_cols=312 Identities=16% Similarity=0.132 Sum_probs=232.1
Q ss_pred CCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcC
Q 047768 92 NLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQ 171 (1009)
Q Consensus 92 ~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~ 171 (1009)
.+++++.|++++|.+++..+..|+++++|++|+|++|.+++..|..|+++++|++|+|++|.+++..|..+ ..+++|+
T Consensus 49 ~l~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~ 126 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVF--QNVPLLT 126 (597)
T ss_dssp GGCCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCC
T ss_pred cCCCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHH--cCCCCCC
Confidence 46778888888888885555557888888888888888888777788888888888888888887665554 5678888
Q ss_pred eEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCc
Q 047768 172 GLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNR 251 (1009)
Q Consensus 172 ~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 251 (1009)
+|+|++|.+++..+..|+++++|++|+|++|.+.+..|..|..+++|++|+|++|.+++. .+..+++|+.|++++|.
T Consensus 127 ~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~---~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 127 VLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSYNL 203 (597)
T ss_dssp EEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBC---CGGGCTTCSEEECCSSC
T ss_pred EEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCc---ChhhhhhhhhhhcccCc
Confidence 888888888866666678888888888888888888888888888888888888888854 25567788888888888
Q ss_pred cCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCC
Q 047768 252 FTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAAN 331 (1009)
Q Consensus 252 l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~ 331 (1009)
+++ + ...++|+.|++++|.++...+..+ ++|+.|+|++|.+++. ..+..+++|+.|+|++|.+....
T Consensus 204 l~~-l-----~~~~~L~~L~ls~n~l~~~~~~~~---~~L~~L~L~~n~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~-- 270 (597)
T 3oja_B 204 LST-L-----AIPIAVEELDASHNSINVVRGPVN---VELTILKLQHNNLTDT--AWLLNYPGLVEVDLSYNELEKIM-- 270 (597)
T ss_dssp CSE-E-----ECCTTCSEEECCSSCCCEEECSCC---SCCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCEEE--
T ss_pred ccc-c-----cCCchhheeeccCCcccccccccC---CCCCEEECCCCCCCCC--hhhccCCCCCEEECCCCccCCCC--
Confidence 872 2 235678888888888875544332 5788888888888874 56788888888888888887543
Q ss_pred CcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCC
Q 047768 332 DLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHV 411 (1009)
Q Consensus 332 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 411 (1009)
+..|..+++|+.|+|++|.+++. |..+..+++|+.|+|++|.++ .+|..
T Consensus 271 ----~~~~~~l~~L~~L~Ls~N~l~~l--------------------------~~~~~~l~~L~~L~Ls~N~l~-~i~~~ 319 (597)
T 3oja_B 271 ----YHPFVKMQRLERLYISNNRLVAL--------------------------NLYGQPIPTLKVLDLSHNHLL-HVERN 319 (597)
T ss_dssp ----SGGGTTCSSCCEEECTTSCCCEE--------------------------ECSSSCCTTCCEEECCSSCCC-CCGGG
T ss_pred ----HHHhcCccCCCEEECCCCCCCCC--------------------------CcccccCCCCcEEECCCCCCC-ccCcc
Confidence 35677888888888888887632 233344566666666666666 45555
Q ss_pred cCCcccccceecccccccCCCCcccccccccccccccCcccccc
Q 047768 412 IGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGN 455 (1009)
Q Consensus 412 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 455 (1009)
+..+++|++|+|++|++++. | +..+++|++|++++|.+.+.
T Consensus 320 ~~~l~~L~~L~L~~N~l~~~-~--~~~~~~L~~L~l~~N~~~~~ 360 (597)
T 3oja_B 320 QPQFDRLENLYLDHNSIVTL-K--LSTHHTLKNLTLSHNDWDCN 360 (597)
T ss_dssp HHHHTTCSEEECCSSCCCCC-C--CCTTCCCSEEECCSSCEEHH
T ss_pred cccCCCCCEEECCCCCCCCc-C--hhhcCCCCEEEeeCCCCCCh
Confidence 66666677777777766643 2 45566677777777777643
No 292
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=100.00 E-value=1.2e-32 Score=309.39 Aligned_cols=305 Identities=26% Similarity=0.374 Sum_probs=182.2
Q ss_pred CCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccccccccccccccccc
Q 047768 238 NISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSM 317 (1009)
Q Consensus 238 ~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~ 317 (1009)
.+++|++|++++|.++ .+|. +..+++|++|++++|++++..+ |.++++|++|++++|+++.+. .|.
T Consensus 42 ~l~~L~~L~l~~~~i~-~~~~--~~~~~~L~~L~l~~n~i~~~~~--~~~l~~L~~L~L~~n~i~~~~--~~~------- 107 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-SIQG--IEYLTNLEYLNLNGNQITDISP--LSNLVKLTNLYIGTNKITDIS--ALQ------- 107 (347)
T ss_dssp HHTTCSEEECCSSCCC-CCTT--GGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCCG--GGT-------
T ss_pred hcccccEEEEeCCccc-cchh--hhhcCCccEEEccCCccccchh--hhcCCcCCEEEccCCcccCch--HHc-------
Confidence 4445555555555554 4432 2335555555555555553322 555555555555555554431 244
Q ss_pred ccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEE
Q 047768 318 LGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSL 397 (1009)
Q Consensus 318 L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 397 (1009)
++++|++|++++|.+++..+ +..+ ..|+.|++++|.....++ .+..+++|++|
T Consensus 108 -----------------------~l~~L~~L~l~~n~i~~~~~--~~~l-~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L 160 (347)
T 4fmz_A 108 -----------------------NLTNLRELYLNEDNISDISP--LANL-TKMYSLNLGANHNLSDLS-PLSNMTGLNYL 160 (347)
T ss_dssp -----------------------TCTTCSEEECTTSCCCCCGG--GTTC-TTCCEEECTTCTTCCCCG-GGTTCTTCCEE
T ss_pred -----------------------CCCcCCEEECcCCcccCchh--hccC-CceeEEECCCCCCccccc-chhhCCCCcEE
Confidence 44555555555555543222 3333 345555555554332222 25555555555
Q ss_pred EccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCcc
Q 047768 398 RMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLT 477 (1009)
Q Consensus 398 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~ 477 (1009)
++++|.+.+..+ +..+++|++|++++|.+++..+ +..+++|++|++++|.+++..+ +..+++|++|++++|+++
T Consensus 161 ~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~~~--~~~~~~L~~L~l~~n~l~ 234 (347)
T 4fmz_A 161 TVTESKVKDVTP--IANLTDLYSLSLNYNQIEDISP--LASLTSLHYFTAYVNQITDITP--VANMTRLNSLKIGNNKIT 234 (347)
T ss_dssp ECCSSCCCCCGG--GGGCTTCSEEECTTSCCCCCGG--GGGCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECCSSCCC
T ss_pred EecCCCcCCchh--hccCCCCCEEEccCCccccccc--ccCCCccceeecccCCCCCCch--hhcCCcCCEEEccCCccC
Confidence 555555553332 4555555555555555553222 4555555555555555554333 455555555555555555
Q ss_pred CCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccccccccc
Q 047768 478 GALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSL 557 (1009)
Q Consensus 478 ~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~ 557 (1009)
+..+ +... .....|++++|.+++. ..+..+++|++|++++|++++. +.+..+++|+.|+|++|++++..|..+
T Consensus 235 ~~~~--~~~l-~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~L~~n~l~~~~~~~l 307 (347)
T 4fmz_A 235 DLSP--LANL-SQLTWLEIGTNQISDI--NAVKDLTKLKMLNVGSNQISDI--SVLNNLSQLNSLFLNNNQLGNEDMEVI 307 (347)
T ss_dssp CCGG--GTTC-TTCCEEECCSSCCCCC--GGGTTCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCGGGHHHH
T ss_pred CCcc--hhcC-CCCCEEECCCCccCCC--hhHhcCCCcCEEEccCCccCCC--hhhcCCCCCCEEECcCCcCCCcChhHh
Confidence 3322 2222 2223477777777643 3578899999999999999864 468899999999999999999999999
Q ss_pred ccccccceEcCCCcccccccccccccccccCceecccccCc
Q 047768 558 SSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFE 598 (1009)
Q Consensus 558 ~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~ 598 (1009)
+.+++|++|+|++|++++..| +..+++|++|++++|+++
T Consensus 308 ~~l~~L~~L~L~~n~l~~~~~--~~~l~~L~~L~l~~N~i~ 346 (347)
T 4fmz_A 308 GGLTNLTTLFLSQNHITDIRP--LASLSKMDSADFANQVIK 346 (347)
T ss_dssp HTCTTCSEEECCSSSCCCCGG--GGGCTTCSEESSSCC---
T ss_pred hccccCCEEEccCCccccccC--hhhhhccceeehhhhccc
Confidence 999999999999999997666 889999999999999885
No 293
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=1.2e-32 Score=307.10 Aligned_cols=200 Identities=23% Similarity=0.291 Sum_probs=114.5
Q ss_pred EEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccc
Q 047768 73 TKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRN 152 (1009)
Q Consensus 73 ~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n 152 (1009)
..+++++++++ .+|..+. ++|++|+|++|++++..|..|+++++|++|+|++|++++..|..|+++++|++|++++|
T Consensus 36 ~~l~~~~~~l~-~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n 112 (332)
T 2ft3_A 36 RVVQCSDLGLK-AVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKN 112 (332)
T ss_dssp TEEECCSSCCS-SCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSS
T ss_pred CEEECCCCCcc-ccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCC
Confidence 34555555554 3344332 46666677666666555566666666666666666666666666666666666666666
Q ss_pred cccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCccc--CCCCcccccccccccccccCccCCC
Q 047768 153 NLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLW--GKIPITLSQLTSLAYLHVGDNHFSG 230 (1009)
Q Consensus 153 ~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~ 230 (1009)
.+. .+|..++ .+|++|++++|++++..+..|+++++|++|++++|.+. +..|..|..+ +|++|++++
T Consensus 113 ~l~-~l~~~~~----~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~----- 181 (332)
T 2ft3_A 113 HLV-EIPPNLP----SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISE----- 181 (332)
T ss_dssp CCC-SCCSSCC----TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCS-----
T ss_pred cCC-ccCcccc----ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcC-----
Confidence 655 4444331 34555555555555444444555555555555555553 2344444444 444444444
Q ss_pred CCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccccccccc
Q 047768 231 TIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINF 309 (1009)
Q Consensus 231 ~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f 309 (1009)
|+++ .+|..++ ++|++|++++|.+++..+..|.++++|++|+|++|++++..+..|
T Consensus 182 -------------------n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~~ 237 (332)
T 2ft3_A 182 -------------------AKLT-GIPKDLP---ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGSL 237 (332)
T ss_dssp -------------------SBCS-SCCSSSC---SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTGG
T ss_pred -------------------CCCC-ccCcccc---CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhHh
Confidence 4444 3444332 466777777777777766777777777777777777766554433
No 294
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=100.00 E-value=5.9e-32 Score=301.50 Aligned_cols=288 Identities=20% Similarity=0.248 Sum_probs=207.1
Q ss_pred hHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccc
Q 047768 241 SLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGL 320 (1009)
Q Consensus 241 ~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L 320 (1009)
+++.+++++|.++ .+|..++ ++|+.|++++|++++..|..|.++++|++|+|++|+++++.+..
T Consensus 34 ~l~~l~~~~~~l~-~ip~~~~---~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~------------ 97 (332)
T 2ft3_A 34 HLRVVQCSDLGLK-AVPKEIS---PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKA------------ 97 (332)
T ss_dssp ETTEEECCSSCCS-SCCSCCC---TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGG------------
T ss_pred cCCEEECCCCCcc-ccCCCCC---CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhH------------
Confidence 4566666666666 5665543 45666666666666555556666666666666666666554444
Q ss_pred cccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEcc
Q 047768 321 ATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRME 400 (1009)
Q Consensus 321 ~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 400 (1009)
|.++++|++|+|++|+++ .+|..+. ..|++|++++|++++..+..|.++++|+.|+++
T Consensus 98 ------------------~~~l~~L~~L~L~~n~l~-~l~~~~~---~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~ 155 (332)
T 2ft3_A 98 ------------------FSPLRKLQKLYISKNHLV-EIPPNLP---SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMG 155 (332)
T ss_dssp ------------------STTCTTCCEEECCSSCCC-SCCSSCC---TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECC
T ss_pred ------------------hhCcCCCCEEECCCCcCC-ccCcccc---ccCCEEECCCCccCccCHhHhCCCccCCEEECC
Confidence 445556666666666665 3333332 457777777777776666678888888888888
Q ss_pred CCCCC--CCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccC
Q 047768 401 ANRLT--GTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTG 478 (1009)
Q Consensus 401 ~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~ 478 (1009)
+|+++ +..|..+..+ +|++|++++|++++ +|..+. ++|++|++++|++++..|..+..+++|+.|++++|
T Consensus 156 ~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~-l~~~~~--~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N---- 227 (332)
T 2ft3_A 156 GNPLENSGFEPGAFDGL-KLNYLRISEAKLTG-IPKDLP--ETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHN---- 227 (332)
T ss_dssp SCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS-CCSSSC--SSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSS----
T ss_pred CCccccCCCCcccccCC-ccCEEECcCCCCCc-cCcccc--CCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCC----
Confidence 88885 3677788877 88888888888884 555544 67888888888888777778888887776544444
Q ss_pred CCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccc
Q 047768 479 ALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLS 558 (1009)
Q Consensus 479 ~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 558 (1009)
++++..|..++.+++|++|++++|+++ .+|..+..+++|+.|+|++|+|++..+..|.
T Consensus 228 ---------------------~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~l~~~~~~~~~ 285 (332)
T 2ft3_A 228 ---------------------QIRMIENGSLSFLPTLRELHLDNNKLS-RVPAGLPDLKLLQVVYLHTNNITKVGVNDFC 285 (332)
T ss_dssp ---------------------CCCCCCTTGGGGCTTCCEEECCSSCCC-BCCTTGGGCTTCCEEECCSSCCCBCCTTSSS
T ss_pred ---------------------cCCcCChhHhhCCCCCCEEECCCCcCe-ecChhhhcCccCCEEECCCCCCCccChhHcc
Confidence 444455556778889999999999998 7888899999999999999999977777776
Q ss_pred cc------cccceEcCCCcccc--cccccccccccccCceeccccc
Q 047768 559 SL------TSIKELDLSQNNFS--GQIPKYLENLSFLQYLNLSYNH 596 (1009)
Q Consensus 559 ~l------~~L~~L~Ls~N~l~--~~~p~~~~~l~~L~~L~ls~N~ 596 (1009)
.. .+|+.|++++|.+. +..|..|..+++|+.+++++|+
T Consensus 286 ~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 286 PVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp CSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred ccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 53 67899999999987 6778889999999999999885
No 295
>2vuw_A Serine/threonine-protein kinase haspin; cell cycle, transferase, CAsp8, nucleotide binding; HET: MSE 5ID MPD; 1.80A {Homo sapiens} PDB: 3f2n_A* 3e7v_A* 3dlz_A* 3fmd_A* 3iq7_A* 2wb8_A
Probab=99.98 E-value=4.4e-33 Score=311.33 Aligned_cols=247 Identities=16% Similarity=0.143 Sum_probs=185.1
Q ss_pred hccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccc--------cchHHHHHHHHHHHhcC---------CCCcce
Q 047768 700 TNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK--------GGSKSFAAECEALRSIR---------HRNLIK 762 (1009)
Q Consensus 700 ~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~--------~~~~~~~~E~~~l~~l~---------h~niv~ 762 (1009)
.++|.+.+.||+|+||+||+|++ +|+.||||+++.... ...+.+.+|+++++.++ ||||++
T Consensus 19 ~~~y~~~~~lG~G~~g~V~~~~~--~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~l~~l~~~~~~~h~niv~ 96 (336)
T 2vuw_A 19 TEKLQRCEKIGEGVFGEVFQTIA--DHTPVAIKIIAIEGPDLVNGSHQKTFEEILPEIIISKELSLLSGEVCNRTEGFIG 96 (336)
T ss_dssp HHHHHTCEEEEEETTEEEEEEEE--TTEEEEEEEEEESCSSCBTTBCCBCHHHHHHHHHHHHHHHHGGGCSSSBCCCBCC
T ss_pred cccchheeeecccCceEEEEEEe--CCceEEEEEEecCCccccccccchhHHHHHHHHHHHHHHHHhhccccccCCchhh
Confidence 46799999999999999999988 689999999975432 12377899999999886 888888
Q ss_pred EEeeeeccc-------------------------cCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHH
Q 047768 763 IVTICSSID-------------------------FKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVID 817 (1009)
Q Consensus 763 l~~~~~~~~-------------------------~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ 817 (1009)
+.+++.... +......++||||+++|++.+.+.+. .+++.+++.++.|
T Consensus 97 l~~~~~~~~~~hp~iv~~~~~~~~~~~~~~~~~~~~~~~~~~lv~E~~~~g~ll~~~~~~-------~~~~~~~~~i~~q 169 (336)
T 2vuw_A 97 LNSVHCVQGSYPPLLLKAWDHYNSTKGSANDRPDFFKDDQLFIVLEFEFGGIDLEQMRTK-------LSSLATAKSILHQ 169 (336)
T ss_dssp EEEEEEEESSCCHHHHHHHHHHHHHTCCSSCCSCCCCTTCEEEEEEEECCCEETGGGTTT-------CCCHHHHHHHHHH
T ss_pred hcceeEecCCCcHHHHHHHHHHhhhccccccCccccccCeEEEEEEecCCCccHHHHHhc-------CCCHHHHHHHHHH
Confidence 777643110 11257889999999999776666442 2899999999999
Q ss_pred HHHHHHHHh-hcCCCCceecCCCCCceeeCCCC--------------------ceEEeccccccccCCCCCCCccccCCc
Q 047768 818 VASAVEYLH-HHCQPPIVHGDLKPSNVLLDHDM--------------------VAHVSDFGLAKFLSASPLGNVVETPSS 876 (1009)
Q Consensus 818 ia~~l~~LH-~~~~~~ivHrdlk~~Nill~~~~--------------------~~kl~DfGla~~~~~~~~~~~~~~~~~ 876 (1009)
++.||+||| ++ +||||||||+|||++.++ .+||+|||+|+.....
T Consensus 170 i~~aL~~lH~~~---~ivHrDlKp~NILl~~~~~~~~~~~~~~~~~~~~~~~~~vkL~DFG~a~~~~~~----------- 235 (336)
T 2vuw_A 170 LTASLAVAEASL---RFEHRDLHWGNVLLKKTSLKKLHYTLNGKSSTIPSCGLQVSIIDYTLSRLERDG----------- 235 (336)
T ss_dssp HHHHHHHHHHHH---CCBCSCCCGGGEEEEECSCSEEEEEETTEEEEEECTTEEEEECCCTTCBEEETT-----------
T ss_pred HHHHHHHHHHhC---CEeECCCCHHHEEEeccCCcceeeeccCccccccCCCceEEEeeccccEecCCC-----------
Confidence 999999999 88 999999999999999887 9999999999866431
Q ss_pred cccccccccccCccccCCCCCCCcccchHHHHH-HHHHHhCCCCCcccccCCccHHHHHHHhccchhhhccCCCCCChhh
Q 047768 877 SIGVKGTIGYVAPEYGLGGEASMRGGVYSYGIL-LLEIFTRRRPTESMFNEGLTLHEFAKRALPEKVMEIVDPSLLPLEE 955 (1009)
Q Consensus 877 ~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvv-l~elltg~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~l~~~~~ 955 (1009)
...||+.|+|||++.+.. +.++||||+|++ .+++++|..||... .|.... .+.+...........
T Consensus 236 --~~~gt~~y~aPE~~~g~~-~~~~Diwsl~~~~~~~~~~g~~p~~~~--------~~~~~~-~~~~~~~~~~~~~~~-- 301 (336)
T 2vuw_A 236 --IVVFCDVSMDEDLFTGDG-DYQFDIYRLMKKENNNRWGEYHPYSNV--------LWLHYL-TDKMLKQMTFKTKCN-- 301 (336)
T ss_dssp --EEECCCCTTCSGGGCCCS-SHHHHHHHHHHHHHTTCTTSCCTHHHH--------HHHHHH-HHHHHHTCCCSSCCC--
T ss_pred --cEEEeecccChhhhcCCC-ccceehhhhhCCCCcccccccCCCcch--------hhhhHH-HHhhhhhhccCcccc--
Confidence 247899999999988766 899999998777 78899999998531 111100 011110000000000
Q ss_pred hhhhccccccHHHHHHHHHHHhhccCCCCCCCCCHHHHH
Q 047768 956 ERTNSRRVRNEECLVAVIKTGVACSIESPFDRMEMTDVV 994 (1009)
Q Consensus 956 ~r~~~~~~~~~~~~~~l~~l~~~cl~~dp~~Rpt~~evl 994 (1009)
.........++.+++.+|++.| |++|++
T Consensus 302 ------~~~~~~~s~~~~dli~~~L~~d-----sa~e~l 329 (336)
T 2vuw_A 302 ------TPAMKQIKRKIQEFHRTMLNFS-----SATDLL 329 (336)
T ss_dssp ------SHHHHHHHHHHHHHHHHGGGSS-----SHHHHH
T ss_pred ------hhhhhhcCHHHHHHHHHHhccC-----CHHHHH
Confidence 0112245678899999999976 998887
No 296
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=4e-32 Score=302.73 Aligned_cols=216 Identities=23% Similarity=0.317 Sum_probs=147.6
Q ss_pred CCCCccCCCCCCC-CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccc
Q 047768 45 TSSWNRSACVNLC-QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETL 123 (1009)
Q Consensus 45 ~~sW~~~~~~~~c-~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L 123 (1009)
...|.. .|+..| |+|+.+.|+. ++++. +|..+. ++|++|+|++|++++..+..|+++++|++|
T Consensus 18 i~~~~~-~cp~~c~c~l~~l~~~~------------~~l~~-lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L 81 (330)
T 1xku_A 18 IEPMGP-VCPFRCQCHLRVVQCSD------------LGLEK-VPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTL 81 (330)
T ss_dssp ----CC-CCCTTCEEETTEEECTT------------SCCCS-CCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEE
T ss_pred cccccC-CCCCCCcCCCeEEEecC------------CCccc-cCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEE
Confidence 345643 355444 4676666653 34432 344443 688999999999997777789999999999
Q ss_pred cccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCc
Q 047768 124 VLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNR 203 (1009)
Q Consensus 124 ~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~ 203 (1009)
+|++|.+++..|..|+++++|++|++++|.++ .+|..++ .+|++|++++|++++..+..|.++++|++|++++|+
T Consensus 82 ~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~----~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 156 (330)
T 1xku_A 82 ILINNKISKISPGAFAPLVKLERLYLSKNQLK-ELPEKMP----KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNP 156 (330)
T ss_dssp ECCSSCCCCBCTTTTTTCTTCCEEECCSSCCS-BCCSSCC----TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSC
T ss_pred ECCCCcCCeeCHHHhcCCCCCCEEECCCCcCC-ccChhhc----ccccEEECCCCcccccCHhHhcCCccccEEECCCCc
Confidence 99999999888999999999999999999887 5665442 577777777777776666667777777777777777
Q ss_pred cc--CCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCC
Q 047768 204 LW--GKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSL 281 (1009)
Q Consensus 204 l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 281 (1009)
+. +..+..|..+++|++|++++|+++ .+|..++ ++|++|++++|.+++..
T Consensus 157 l~~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~l~~~~~---~~L~~L~l~~n~l~~~~ 208 (330)
T 1xku_A 157 LKSSGIENGAFQGMKKLSYIRIADTNIT-------------------------TIPQGLP---PSLTELHLDGNKITKVD 208 (330)
T ss_dssp CCGGGBCTTGGGGCTTCCEEECCSSCCC-------------------------SCCSSCC---TTCSEEECTTSCCCEEC
T ss_pred CCccCcChhhccCCCCcCEEECCCCccc-------------------------cCCcccc---ccCCEEECCCCcCCccC
Confidence 74 255666666666666666666665 2332222 45666666666666666
Q ss_pred CCCcCccccccccccccccccccccccc
Q 047768 282 PDSFSNASNLEVLHLAENQFRGQVSINF 309 (1009)
Q Consensus 282 p~~~~~l~~L~~L~Ls~N~l~~~~~~~f 309 (1009)
|..|.++++|++|+|++|++++..+..|
T Consensus 209 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~~ 236 (330)
T 1xku_A 209 AASLKGLNNLAKLGLSFNSISAVDNGSL 236 (330)
T ss_dssp TGGGTTCTTCCEEECCSSCCCEECTTTG
T ss_pred HHHhcCCCCCCEEECCCCcCceeChhhc
Confidence 6666666667777776666665544333
No 297
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.98 E-value=1e-31 Score=299.37 Aligned_cols=288 Identities=21% Similarity=0.217 Sum_probs=154.6
Q ss_pred HHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccccccccccccccccccccc
Q 047768 242 LVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLA 321 (1009)
Q Consensus 242 L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~ 321 (1009)
++.++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|+++++.+..|..+++|+.|+++
T Consensus 33 l~~l~~~~~~l~-~lp~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls 108 (330)
T 1xku_A 33 LRVVQCSDLGLE-KVPKDLP---PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLS 108 (330)
T ss_dssp TTEEECTTSCCC-SCCCSCC---TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECC
T ss_pred CeEEEecCCCcc-ccCccCC---CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECC
Confidence 344444444444 4444332 455666666666666655566666666666666666666555555555555555555
Q ss_pred ccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCcccc--CCCccccCcCccCEEEc
Q 047768 322 TNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYG--TIPPGIANLVNLNSLRM 399 (1009)
Q Consensus 322 ~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~--~~p~~~~~l~~L~~L~L 399 (1009)
+|.+..++.. + .++|++|++++|.+++..+..+..+ ..|+.|++++|.+.. ..+..|.++++|+.|++
T Consensus 109 ~n~l~~l~~~-------~--~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l 178 (330)
T 1xku_A 109 KNQLKELPEK-------M--PKTLQELRVHENEITKVRKSVFNGL-NQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRI 178 (330)
T ss_dssp SSCCSBCCSS-------C--CTTCCEEECCSSCCCBBCHHHHTTC-TTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEEC
T ss_pred CCcCCccChh-------h--cccccEEECCCCcccccCHhHhcCC-ccccEEECCCCcCCccCcChhhccCCCCcCEEEC
Confidence 5544433221 0 1355555555555554444444443 344445555444432 34444444555555555
Q ss_pred cCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCC
Q 047768 400 EANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGA 479 (1009)
Q Consensus 400 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~ 479 (1009)
++|++++ +|..+. ++|++|++++|++++..|..+..+++|+.|
T Consensus 179 ~~n~l~~-------------------------l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L---------- 221 (330)
T 1xku_A 179 ADTNITT-------------------------IPQGLP--PSLTELHLDGNKITKVDAASLKGLNNLAKL---------- 221 (330)
T ss_dssp CSSCCCS-------------------------CCSSCC--TTCSEEECTTSCCCEECTGGGTTCTTCCEE----------
T ss_pred CCCcccc-------------------------CCcccc--ccCCEEECCCCcCCccCHHHhcCCCCCCEE----------
Confidence 5555442 232222 445555555555554444444444444432
Q ss_pred CchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccccccccccc
Q 047768 480 LPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSS 559 (1009)
Q Consensus 480 ~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 559 (1009)
++++|.+++..+..+..+++|++|++++|+++ .+|..+..+++|++|+|++|+|++..+..|..
T Consensus 222 ---------------~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~L~~L~l~~N~i~~~~~~~f~~ 285 (330)
T 1xku_A 222 ---------------GLSFNSISAVDNGSLANTPHLRELHLNNNKLV-KVPGGLADHKYIQVVYLHNNNISAIGSNDFCP 285 (330)
T ss_dssp ---------------ECCSSCCCEECTTTGGGSTTCCEEECCSSCCS-SCCTTTTTCSSCCEEECCSSCCCCCCTTSSSC
T ss_pred ---------------ECCCCcCceeChhhccCCCCCCEEECCCCcCc-cCChhhccCCCcCEEECCCCcCCccChhhcCC
Confidence 22223333233334555666667777777666 56666667777777777777777655555543
Q ss_pred ------ccccceEcCCCccccc--ccccccccccccCceeccccc
Q 047768 560 ------LTSIKELDLSQNNFSG--QIPKYLENLSFLQYLNLSYNH 596 (1009)
Q Consensus 560 ------l~~L~~L~Ls~N~l~~--~~p~~~~~l~~L~~L~ls~N~ 596 (1009)
.+.|+.|++++|.+.. ..|..|..+..|+.++|++|+
T Consensus 286 ~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N~ 330 (330)
T 1xku_A 286 PGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNYK 330 (330)
T ss_dssp SSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC----
T ss_pred cccccccccccceEeecCcccccccCccccccccceeEEEecccC
Confidence 3667777888877753 456677778888888888774
No 298
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=6e-36 Score=350.42 Aligned_cols=380 Identities=18% Similarity=0.154 Sum_probs=231.2
Q ss_pred CCcCeEeecCccCCCCCCcc-cCCccccceeecccCcccC----CCCcccccccccccccccCccCCCCCCCcccCCChH
Q 047768 168 FNLQGLSVGDNQLTGQLPAS-IGNLSALRVIDIRTNRLWG----KIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSL 242 (1009)
Q Consensus 168 ~~L~~L~L~~n~l~~~~p~~-~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 242 (1009)
++|++|+|++|+++...... +..+++|++|+|++|++.. .++..+..+++|++|+|++|.+++..+.
T Consensus 3 ~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~-------- 74 (461)
T 1z7x_W 3 LDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVH-------- 74 (461)
T ss_dssp EEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHH--------
T ss_pred ccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHH--------
Confidence 46788888888887544333 6778888888888888763 3456677778888888888777632221
Q ss_pred HHHHhhCCccCCCCChhhccCCC----cccceeccccccCC----CCCCCcCcccccccccccccccccccccccc----
Q 047768 243 VEIYLYGNRFTGSLPIEIGKNLP----NLRNFVIYTNNFTG----SLPDSFSNASNLEVLHLAENQFRGQVSINFN---- 310 (1009)
Q Consensus 243 ~~L~L~~N~l~~~ip~~~~~~l~----~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~---- 310 (1009)
.++..++ +|++|+|++|+++. .++..|..+++|++|+|++|++++.....+.
T Consensus 75 ----------------~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 75 ----------------CVLQGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp ----------------HHHHTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred ----------------HHHHHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 1222233 57777777777773 4467778888888888888887754433322
Q ss_pred -cccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhh----cccceEEEcCCCccccC--
Q 047768 311 -GLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANL----STALIDFNLGKNQIYGT-- 383 (1009)
Q Consensus 311 -~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l----~~~L~~L~L~~N~l~~~-- 383 (1009)
..++|+.|++++|.++.... ..++..+..+++|++|++++|.+++..+..+... ...|++|++++|.+++.
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~ 216 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASC--EPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNC 216 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGH--HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHH
T ss_pred cCCCcceEEECCCCCCCHHHH--HHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHH
Confidence 24457777777776654221 1233456667778888888887765544444331 23667777777776653
Q ss_pred --CCccccCcCccCEEEccCCCCCCCC-----CCCcCCcccccceecccccccCC----CCcccccccccccccccCccc
Q 047768 384 --IPPGIANLVNLNSLRMEANRLTGTI-----PHVIGELKNLQLLHLHANFLQGT----IPSSLGNLTLLTYLSFGANNL 452 (1009)
Q Consensus 384 --~p~~~~~l~~L~~L~L~~N~l~~~~-----p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l 452 (1009)
++..+..+++|+.|+|++|++++.. +..+..+++|++|+|++|++++. ++..+..+++|++|++++|.+
T Consensus 217 ~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 217 RDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCC
Confidence 3555666677777777777665322 22223456666777777666643 455555566666666666666
Q ss_pred ccccCCCCCC-----CCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCC----CCCCccCCCCCCeeecccc
Q 047768 453 QGNIPFSLGN-----CKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGS----LPLGVGNLKSLVRLGIARN 523 (1009)
Q Consensus 453 ~~~~p~~~~~-----l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~----~p~~~~~l~~L~~L~ls~N 523 (1009)
++..+..+.. .++|+. |++++|.+++. +|..+..+++|++|++++|
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~-------------------------L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n 351 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLES-------------------------LWVKSCSFTAACCSHFSSVLAQNRFLLELQISNN 351 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCE-------------------------EECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSS
T ss_pred chHHHHHHHHHhccCCcccee-------------------------eEcCCCCCchHHHHHHHHHHhhCCCccEEEccCC
Confidence 5332221111 123333 45555554432 3444556677777888877
Q ss_pred ccCCCccccccC-----CCCccEEEecCccccc----ccccccccccccceEcCCCcccccccccccc-----cccccCc
Q 047768 524 QFSGQIPVTLGA-----CTSLEYVELQGNSFSG----TIPQSLSSLTSIKELDLSQNNFSGQIPKYLE-----NLSFLQY 589 (1009)
Q Consensus 524 ~l~~~~p~~~~~-----l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~-----~l~~L~~ 589 (1009)
.+++..+..+.. .++|+.|+|++|++++ .+|..+..+++|++|||++|++++.-...+. ...+|+.
T Consensus 352 ~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~~~~~l~~~l~~~~~~L~~ 431 (461)
T 1z7x_W 352 RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDAGILQLVESVRQPGCLLEQ 431 (461)
T ss_dssp BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHHHHHHHHHHHTSTTCCCCE
T ss_pred ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHHHHHHHHHHhccCCcchhh
Confidence 777555544443 5677888888887775 6677777777788888888877653211111 1234555
Q ss_pred eecccccCc
Q 047768 590 LNLSYNHFE 598 (1009)
Q Consensus 590 L~ls~N~l~ 598 (1009)
|++.+|.+.
T Consensus 432 L~~~~~~~~ 440 (461)
T 1z7x_W 432 LVLYDIYWS 440 (461)
T ss_dssp EECTTCCCC
T ss_pred eeecccccC
Confidence 555555544
No 299
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.97 E-value=1.3e-35 Score=347.61 Aligned_cols=358 Identities=16% Similarity=0.134 Sum_probs=218.4
Q ss_pred eEEEEEeecCCcccccCcc-ccCCCCCCeeeecCCcCCc----cCCccccCccccccccccccccCCCCCCCCcCCCcCc
Q 047768 71 RVTKLDLRNQSIGGILSPY-VGNLSFLRYINIADNDFHG----EIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLI 145 (1009)
Q Consensus 71 ~v~~l~l~~~~l~~~~~~~-~~~l~~L~~L~L~~n~~~~----~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~ 145 (1009)
+++.|||+++.++...... +..+++|++|+|++|++++ .+|..+..+++|++|||++|.+++..
T Consensus 4 ~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~----------- 72 (461)
T 1z7x_W 4 DIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVG----------- 72 (461)
T ss_dssp EEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHH-----------
T ss_pred cceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHH-----------
Confidence 5566666666655433322 4455566666666666553 23445555555666666655554322
Q ss_pred EEecccccccCCCchHHhhhccC----CcCeEeecCccCCC----CCCcccCCccccceeecccCcccCCCCccccc---
Q 047768 146 TFSAHRNNLVGEIPEELISRRLF----NLQGLSVGDNQLTG----QLPASIGNLSALRVIDIRTNRLWGKIPITLSQ--- 214 (1009)
Q Consensus 146 ~L~l~~n~l~~~~p~~~~~~~l~----~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~--- 214 (1009)
+..++ ..+. +|++|+|++|+++. .++..+..+++|++|+|++|.+....+..+..
T Consensus 73 -------------~~~l~-~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~ 138 (461)
T 1z7x_W 73 -------------VHCVL-QGLQTPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLL 138 (461)
T ss_dssp -------------HHHHH-HTTCSTTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHT
T ss_pred -------------HHHHH-HHHhhCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHh
Confidence 22221 1222 35555555555542 23445555555555555555554332222221
Q ss_pred --ccccccccccCccCCCC----CCCcccCCChHHHHHhhCCccCCCCChhh----ccCCCcccceeccccccCCC----
Q 047768 215 --LTSLAYLHVGDNHFSGT----IPPSVYNISSLVEIYLYGNRFTGSLPIEI----GKNLPNLRNFVIYTNNFTGS---- 280 (1009)
Q Consensus 215 --l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~ip~~~----~~~l~~L~~L~L~~N~l~~~---- 280 (1009)
.++|++|+|++|++++. ++..+..+++|++|++++|.+++..+..+ ....++|++|++++|.++..
T Consensus 139 ~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 218 (461)
T 1z7x_W 139 DPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRD 218 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHH
T ss_pred cCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHH
Confidence 33455555555555532 23334445555555555555542212122 12356888888888888764
Q ss_pred CCCCcCccccccccccccccccccc-----ccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCC
Q 047768 281 LPDSFSNASNLEVLHLAENQFRGQV-----SINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGF 355 (1009)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~N~l~~~~-----~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 355 (1009)
++..+..+++|++|+|++|++.... +..+..+++|+.|++++|.++..+. ..++..+.++++|++|+|++|.+
T Consensus 219 l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~~n~l~~~~~--~~l~~~l~~~~~L~~L~Ls~n~i 296 (461)
T 1z7x_W 219 LCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIWECGITAKGC--GDLCRVLRAKESLKELSLAGNEL 296 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHH--HHHHHHHHHCTTCCEEECTTCCC
T ss_pred HHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECcCCCCCHHHH--HHHHHHHhhCCCcceEECCCCCC
Confidence 4666777888888888888887643 2333457788888888887764221 11345677788899999999988
Q ss_pred CCcCchhhhhh----cccceEEEcCCCccccC----CCccccCcCccCEEEccCCCCCCCCCCCcCC-----ccccccee
Q 047768 356 GGVLPHSIANL----STALIDFNLGKNQIYGT----IPPGIANLVNLNSLRMEANRLTGTIPHVIGE-----LKNLQLLH 422 (1009)
Q Consensus 356 ~~~~p~~~~~l----~~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~-----l~~L~~L~ 422 (1009)
++..+..+... ...|+.|++++|.+++. ++..+..+++|+.|+|++|++++..+..+.. .++|++|+
T Consensus 297 ~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~ 376 (461)
T 1z7x_W 297 GDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLW 376 (461)
T ss_dssp HHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEE
T ss_pred chHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEE
Confidence 76555555443 24788888888888765 4566677788888888888887655544432 56888888
Q ss_pred cccccccC----CCCcccccccccccccccCcccccc
Q 047768 423 LHANFLQG----TIPSSLGNLTLLTYLSFGANNLQGN 455 (1009)
Q Consensus 423 L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~ 455 (1009)
|++|++++ .+|..+..+++|++|++++|++++.
T Consensus 377 L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~i~~~ 413 (461)
T 1z7x_W 377 LADCDVSDSSCSSLAATLLANHSLRELDLSNNCLGDA 413 (461)
T ss_dssp CTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSSCCHH
T ss_pred CCCCCCChhhHHHHHHHHHhCCCccEEECCCCCCCHH
Confidence 88888875 6777778888888888888888754
No 300
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=4.6e-31 Score=290.82 Aligned_cols=254 Identities=18% Similarity=0.208 Sum_probs=163.2
Q ss_pred CCCCC-CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccC
Q 047768 53 CVNLC-QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFS 131 (1009)
Q Consensus 53 ~~~~c-~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 131 (1009)
|++.| |.|++|.|+... ++. +|..+ .++|++|+|++|+++...+..|+++++|++|+|++|.++
T Consensus 1 CP~~C~C~~~~l~c~~~~------------l~~-ip~~~--~~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~ 65 (306)
T 2z66_A 1 CPSRCSCSGTEIRCNSKG------------LTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLS 65 (306)
T ss_dssp CCTTCEEETTEEECCSSC------------CSS-CCSCC--CTTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CcCCCeeCCCEEEcCCCC------------ccc-CCCCC--CCCCCEEECCCCccCccCHhHhhccccCCEEECCCCccC
Confidence 44444 689999997542 221 22222 246677777777776333334667777777777777666
Q ss_pred C--CCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCC-cccCCccccceeecccCcccCCC
Q 047768 132 G--RIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLP-ASIGNLSALRVIDIRTNRLWGKI 208 (1009)
Q Consensus 132 ~--~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~ 208 (1009)
. .+|..+..+++|++|++++|.+. .+|..+ ..+++|++|++++|++++..+ ..+.++++|++|++++|++.+..
T Consensus 66 ~~~~~~~~~~~~~~L~~L~Ls~n~i~-~l~~~~--~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~ 142 (306)
T 2z66_A 66 FKGCCSQSDFGTTSLKYLDLSFNGVI-TMSSNF--LGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAF 142 (306)
T ss_dssp EEEEEEHHHHSCSCCCEEECCSCSEE-EEEEEE--ETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTSCCEECS
T ss_pred cccCcccccccccccCEEECCCCccc-cChhhc--CCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCCcCCccc
Confidence 2 23555566677777777777665 344443 456677777777777765544 46677777777777777777667
Q ss_pred CcccccccccccccccCccCCC-CCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCc
Q 047768 209 PITLSQLTSLAYLHVGDNHFSG-TIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSN 287 (1009)
Q Consensus 209 p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 287 (1009)
+..|..+++|++|+|++|.+++ .+|..+..+++|++|+|++|+++ .++...+..+++|++|+|++|.+++..+..|..
T Consensus 143 ~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~ 221 (306)
T 2z66_A 143 NGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLE-QLSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKC 221 (306)
T ss_dssp TTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCC-EECTTTTTTCTTCCEEECTTSCCSBCCSGGGTT
T ss_pred hhhcccCcCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcC-CcCHHHhcCCCCCCEEECCCCccCccChhhccC
Confidence 7777777777777777777765 46667777777777777777776 444444456777777777777777766667777
Q ss_pred cccccccccccccccccccccccccc-cccccccccccc
Q 047768 288 ASNLEVLHLAENQFRGQVSINFNGLK-DLSMLGLATNFL 325 (1009)
Q Consensus 288 l~~L~~L~Ls~N~l~~~~~~~f~~l~-~L~~L~L~~N~l 325 (1009)
+++|++|+|++|++++..+..|..++ +|+.|+|++|.+
T Consensus 222 l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~ 260 (306)
T 2z66_A 222 LNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDF 260 (306)
T ss_dssp CTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCE
T ss_pred cccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCe
Confidence 77777777777777776665555542 444444444444
No 301
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=2.1e-30 Score=291.62 Aligned_cols=277 Identities=15% Similarity=0.166 Sum_probs=211.8
Q ss_pred CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCC
Q 047768 58 QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTN 137 (1009)
Q Consensus 58 ~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~ 137 (1009)
|.|.|+ |+ +++++++. +|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..|..
T Consensus 30 C~~~~~-c~----------~~~~~l~~-iP~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~ 95 (353)
T 2z80_A 30 CDRNGI-CK----------GSSGSLNS-IPSGLT--EAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDS 95 (353)
T ss_dssp ECTTSE-EE----------CCSTTCSS-CCTTCC--TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT
T ss_pred CCCCeE-ee----------CCCCCccc-cccccc--ccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhh
Confidence 379887 64 35566654 455444 58999999999999766668999999999999999999888899
Q ss_pred CcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCC-cccCCccccceeecccC-cccCCCCcccccc
Q 047768 138 LSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLP-ASIGNLSALRVIDIRTN-RLWGKIPITLSQL 215 (1009)
Q Consensus 138 l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p-~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l 215 (1009)
|+++++|++|++++|++++ +|...+ ..+++|++|+|++|++++..+ ..|+++++|++|++++| .+.+..+..|..+
T Consensus 96 ~~~l~~L~~L~Ls~n~l~~-~~~~~~-~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l 173 (353)
T 2z80_A 96 FSSLGSLEHLDLSYNYLSN-LSSSWF-KPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGL 173 (353)
T ss_dssp TTTCTTCCEEECCSSCCSS-CCHHHH-TTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTC
T ss_pred cCCCCCCCEEECCCCcCCc-CCHhHh-CCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCC
Confidence 9999999999999999985 555433 678999999999999995544 48999999999999999 5777778899999
Q ss_pred cccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcC---cccccc
Q 047768 216 TSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFS---NASNLE 292 (1009)
Q Consensus 216 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~---~l~~L~ 292 (1009)
++|++|++++|++++..|..+.++++|++|++++|+++ .+|..++..+++|+.|++++|.+++..+..+. ..+.++
T Consensus 174 ~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~-~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~~~~~~l~ 252 (353)
T 2z80_A 174 TFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHI-LLLEIFVDVTSSVECLELRDTDLDTFHFSELSTGETNSLIK 252 (353)
T ss_dssp CEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCST-THHHHHHHHTTTEEEEEEESCBCTTCCCC------CCCCCC
T ss_pred CCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccc-cchhhhhhhcccccEEECCCCccccccccccccccccchhh
Confidence 99999999999999888999999999999999999997 88888887899999999999999987666543 345566
Q ss_pred cccccccccccc----cccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCC
Q 047768 293 VLHLAENQFRGQ----VSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGG 357 (1009)
Q Consensus 293 ~L~Ls~N~l~~~----~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 357 (1009)
.++|++|.+.+. .+..|..+++|+.|++++|.++.++. ..|.++++|++|+|++|.+.+
T Consensus 253 ~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~------~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 253 KFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPD------GIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp EEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCT------TTTTTCTTCCEEECCSSCBCC
T ss_pred ccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCH------HHHhcCCCCCEEEeeCCCccC
Confidence 667776666542 22334444444444444444443322 122344444444444444443
No 302
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.96 E-value=1.9e-32 Score=331.45 Aligned_cols=455 Identities=16% Similarity=0.126 Sum_probs=206.9
Q ss_pred CCCCCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcC---CccCCcccc------------Cccc
Q 047768 55 NLCQHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDF---HGEIPDRIG------------NLFR 119 (1009)
Q Consensus 55 ~~c~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~---~~~~p~~~~------------~l~~ 119 (1009)
-.|+.|.++.+... + .+.+.+ .+...++..+..+++|++|+|+++.. .+.+|..++ .+++
T Consensus 39 ~vck~W~~~~~~~~--~--~l~~~~-~~~~~~~~~~~~~~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~ 113 (592)
T 3ogk_B 39 LVCRRWFKIDSETR--E--HVTMAL-CYTATPDRLSRRFPNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQ 113 (592)
T ss_dssp TSCHHHHHHHHHHC--C--EEEESC-GGGSCHHHHHHHCTTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTT
T ss_pred HHhHHHHHhhhccc--c--EEEEee-ccccChHHHHHhCCCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCC
Confidence 34668999865322 1 222222 23334444566788899999987532 245555444 5666
Q ss_pred cccccccccccCCCCCCCCcCC--CcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCC----CCcccCCccc
Q 047768 120 LETLVLANNSFSGRIPTNLSHC--SKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQ----LPASIGNLSA 193 (1009)
Q Consensus 120 L~~L~Ls~N~l~~~~p~~l~~l--~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~----~p~~~~~l~~ 193 (1009)
|++|+|++|.+++..+..++.. .+|++|++++|.-.....-......+++|++|+|++|.+++. ++..+.++++
T Consensus 114 L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~ 193 (592)
T 3ogk_B 114 LKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFTTDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTS 193 (592)
T ss_dssp CCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEEHHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCC
T ss_pred CCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcCHHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCC
Confidence 6777776666665554444442 236666666554110000000112445555555555555433 2223344455
Q ss_pred cceeecccCcccC----CCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccc
Q 047768 194 LRVIDIRTNRLWG----KIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRN 269 (1009)
Q Consensus 194 L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~ 269 (1009)
|++|++++|.+++ .++..+..+++|++|+|++|.+.+ +|..+. ++++|++
T Consensus 194 L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~-l~~~~~-------------------------~~~~L~~ 247 (592)
T 3ogk_B 194 LEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILE-LVGFFK-------------------------AAANLEE 247 (592)
T ss_dssp CCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGG-GHHHHH-------------------------HCTTCCE
T ss_pred ccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHH-HHHHHh-------------------------hhhHHHh
Confidence 5555555555541 222233344455555555544442 233333 3445555
Q ss_pred eeccccccC---CCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccc
Q 047768 270 FVIYTNNFT---GSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQ 346 (1009)
Q Consensus 270 L~L~~N~l~---~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~ 346 (1009)
|+++.+... ...+..+..+++|+.|+++++... ..+..+..+++|+.|+|++|.+... .+...+..+++|+
T Consensus 248 L~l~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~-~l~~~~~~~~~L~~L~Ls~~~l~~~-----~~~~~~~~~~~L~ 321 (592)
T 3ogk_B 248 FCGGSLNEDIGMPEKYMNLVFPRKLCRLGLSYMGPN-EMPILFPFAAQIRKLDLLYALLETE-----DHCTLIQKCPNLE 321 (592)
T ss_dssp EEECBCCCCTTCTTSSSCCCCCTTCCEEEETTCCTT-TGGGGGGGGGGCCEEEETTCCCCHH-----HHHHHHTTCTTCC
T ss_pred hcccccccccchHHHHHHhhccccccccCccccchh-HHHHHHhhcCCCcEEecCCCcCCHH-----HHHHHHHhCcCCC
Confidence 555432211 123344555556666666554222 2223333444444444444432210 1112344555666
Q ss_pred eEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEcc-----------CCCCCCCC-CCCcCC
Q 047768 347 YLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRME-----------ANRLTGTI-PHVIGE 414 (1009)
Q Consensus 347 ~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~-----------~N~l~~~~-p~~~~~ 414 (1009)
+|+++ |.+....... .+..+++|+.|+++ .|.+++.. +..+..
T Consensus 322 ~L~L~-~~~~~~~l~~------------------------~~~~~~~L~~L~L~~g~~~~~~~~~~~~~~~~~~~~l~~~ 376 (592)
T 3ogk_B 322 VLETR-NVIGDRGLEV------------------------LAQYCKQLKRLRIERGADEQGMEDEEGLVSQRGLIALAQG 376 (592)
T ss_dssp EEEEE-GGGHHHHHHH------------------------HHHHCTTCCEEEEECCCCSSTTSSTTCCCCHHHHHHHHHH
T ss_pred EEecc-CccCHHHHHH------------------------HHHhCCCCCEEEeecCccccccccccCccCHHHHHHHHhh
Confidence 66665 3332221112 22334444455554 23333211 111223
Q ss_pred cccccceecccccccCCCCccccc-cccccccccc----Ccccccc-----cCCCCCCCCCccccccCCCCccCCCchhh
Q 047768 415 LKNLQLLHLHANFLQGTIPSSLGN-LTLLTYLSFG----ANNLQGN-----IPFSLGNCKNLMFFFAPRNKLTGALPQQI 484 (1009)
Q Consensus 415 l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~-----~p~~~~~l~~L~~l~l~~N~l~~~~p~~~ 484 (1009)
+++|++|+++.|++++..+..+.. +++|++|+++ .|++++. ++..+.++++|+.|+++.+.
T Consensus 377 ~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~~~~~~~~~L~~L~L~~~~--------- 447 (592)
T 3ogk_B 377 CQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVRSLLIGCKKLRRFAFYLRQ--------- 447 (592)
T ss_dssp CTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHHHHHHHCTTCCEEEEECCG---------
T ss_pred CccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHHHHHHhCCCCCEEEEecCC---------
Confidence 444555555445544433333332 4445555553 3333321 11112223333333332111
Q ss_pred hhhccceeeEecCCCccCCCCCCCc-cCCCCCCeeeccccccCC-CccccccCCCCccEEEecCcccccc-ccccccccc
Q 047768 485 LEITTLSLSLDLSDNLLNGSLPLGV-GNLKSLVRLGIARNQFSG-QIPVTLGACTSLEYVELQGNSFSGT-IPQSLSSLT 561 (1009)
Q Consensus 485 ~~~~~~~~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~~-~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~ 561 (1009)
+.+++..+..+ ..+++|++|++++|++++ .++..+..+++|+.|+|++|++++. ++..+..++
T Consensus 448 --------------~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~ 513 (592)
T 3ogk_B 448 --------------GGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLP 513 (592)
T ss_dssp --------------GGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCS
T ss_pred --------------CCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcC
Confidence 00111111111 125567777777777665 2344456677777777777776644 333345667
Q ss_pred ccceEcCCCccccccccccc-ccccccCceeccc
Q 047768 562 SIKELDLSQNNFSGQIPKYL-ENLSFLQYLNLSY 594 (1009)
Q Consensus 562 ~L~~L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~ 594 (1009)
+|++|+|++|++++.-...+ ..++.+....+..
T Consensus 514 ~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~ 547 (592)
T 3ogk_B 514 SLRYLWVQGYRASMTGQDLMQMARPYWNIELIPS 547 (592)
T ss_dssp SCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECC
T ss_pred ccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecC
Confidence 77777777777764422222 2345454444443
No 303
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.96 E-value=9.8e-30 Score=286.16 Aligned_cols=282 Identities=17% Similarity=0.174 Sum_probs=152.7
Q ss_pred ccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccc
Q 047768 114 IGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSA 193 (1009)
Q Consensus 114 ~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~ 193 (1009)
-..++.....|+++|.++ .+|..+. ++|++|++++|++ ++..+..|+++++
T Consensus 27 ~~~C~~~~~c~~~~~~l~-~iP~~~~--~~L~~L~l~~n~i--------------------------~~~~~~~~~~l~~ 77 (353)
T 2z80_A 27 SLSCDRNGICKGSSGSLN-SIPSGLT--EAVKSLDLSNNRI--------------------------TYISNSDLQRCVN 77 (353)
T ss_dssp CCEECTTSEEECCSTTCS-SCCTTCC--TTCCEEECTTSCC--------------------------CEECTTTTTTCTT
T ss_pred CCCCCCCeEeeCCCCCcc-ccccccc--ccCcEEECCCCcC--------------------------cccCHHHhccCCC
Confidence 334555555677777776 5555443 2555555555554 4333334455555
Q ss_pred cceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCCh-hhccCCCcccceec
Q 047768 194 LRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPI-EIGKNLPNLRNFVI 272 (1009)
Q Consensus 194 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~-~~~~~l~~L~~L~L 272 (1009)
|++|+|++|++++..|.+|.++++|++|+|++|++++..+..|.++++|++|+|++|+++ .+|. ..+.++++|++|++
T Consensus 78 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l 156 (353)
T 2z80_A 78 LQALVLTSNGINTIEEDSFSSLGSLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRV 156 (353)
T ss_dssp CCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEE
T ss_pred CCEEECCCCccCccCHhhcCCCCCCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEEC
Confidence 555555555555444445555555555555555555322223445555555555555555 4444 44445566666666
Q ss_pred ccc-ccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEcc
Q 047768 273 YTN-NFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLA 351 (1009)
Q Consensus 273 ~~N-~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~ 351 (1009)
++| .++...+..|.++++|++|++++|++++..+..|..+++|+.|++++|.+...+. ..+..+++|++|+++
T Consensus 157 ~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~~n~l~~~~~------~~~~~~~~L~~L~L~ 230 (353)
T 2z80_A 157 GNMDTFTKIQRKDFAGLTFLEELEIDASDLQSYEPKSLKSIQNVSHLILHMKQHILLLE------IFVDVTSSVECLELR 230 (353)
T ss_dssp EESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEECSCSTTHHH------HHHHHTTTEEEEEEE
T ss_pred CCCccccccCHHHccCCCCCCEEECCCCCcCccCHHHHhccccCCeecCCCCccccchh------hhhhhcccccEEECC
Confidence 655 3444455556666666666666666665555555555555555555555532211 223345666666666
Q ss_pred CCCCCCcCchhhhh--hcccceEEEcCCCcccc----CCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceeccc
Q 047768 352 DNGFGGVLPHSIAN--LSTALIDFNLGKNQIYG----TIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHA 425 (1009)
Q Consensus 352 ~N~l~~~~p~~~~~--l~~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 425 (1009)
+|.+++..+..+.. ....++.++|++|.+++ .+|..+..+++|+.|+|++|+|+...+..|..+++|++|+|++
T Consensus 231 ~n~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 310 (353)
T 2z80_A 231 DTDLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQLKSVPDGIFDRLTSLQKIWLHT 310 (353)
T ss_dssp SCBCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CCccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCCCCccCHHHHhcCCCCCEEEeeC
Confidence 66666544333221 12334555555555543 3456666777777777777777743333456777777777777
Q ss_pred ccccCC
Q 047768 426 NFLQGT 431 (1009)
Q Consensus 426 N~l~~~ 431 (1009)
|++++.
T Consensus 311 N~~~~~ 316 (353)
T 2z80_A 311 NPWDCS 316 (353)
T ss_dssp SCBCCC
T ss_pred CCccCc
Confidence 777643
No 304
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.96 E-value=8.5e-29 Score=272.68 Aligned_cols=275 Identities=23% Similarity=0.288 Sum_probs=145.0
Q ss_pred cceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccce
Q 047768 268 RNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQY 347 (1009)
Q Consensus 268 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~ 347 (1009)
+.++.+++.++. +|..+. ++|++|+|++|+++.+++..|.. +++|++
T Consensus 10 ~~l~c~~~~l~~-ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~------------------------------l~~L~~ 56 (306)
T 2z66_A 10 TEIRCNSKGLTS-VPTGIP--SSATRLELESNKLQSLPHGVFDK------------------------------LTQLTK 56 (306)
T ss_dssp TEEECCSSCCSS-CCSCCC--TTCCEEECCSSCCCCCCTTTTTT------------------------------CTTCSE
T ss_pred CEEEcCCCCccc-CCCCCC--CCCCEEECCCCccCccCHhHhhc------------------------------cccCCE
Confidence 456677777763 344332 46777777777776555444444 444555
Q ss_pred EEccCCCCCCc--CchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCC-CCcCCcccccceecc
Q 047768 348 LYLADNGFGGV--LPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIP-HVIGELKNLQLLHLH 424 (1009)
Q Consensus 348 L~L~~N~l~~~--~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~L~ 424 (1009)
|+|++|.++.. .|..+..+ ..|++|+|++|.++ .+|..+.++++|++|++++|++++..+ ..+..+++|++|+++
T Consensus 57 L~L~~n~l~~~~~~~~~~~~~-~~L~~L~Ls~n~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~ 134 (306)
T 2z66_A 57 LSLSSNGLSFKGCCSQSDFGT-TSLKYLDLSFNGVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDIS 134 (306)
T ss_dssp EECCSSCCCEEEEEEHHHHSC-SCCCEEECCSCSEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECT
T ss_pred EECCCCccCcccCcccccccc-cccCEEECCCCccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECC
Confidence 55555554421 13333333 34555555555554 344456666666666666666665444 456666666666666
Q ss_pred cccccCCCCcccccccccccccccCccccc-ccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCC
Q 047768 425 ANFLQGTIPSSLGNLTLLTYLSFGANNLQG-NIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNG 503 (1009)
Q Consensus 425 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~-~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~ 503 (1009)
+|.+++..|..+.++++|++|++++|.+++ .+|..+..+++|++ |++++|++++
T Consensus 135 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~-------------------------L~Ls~n~l~~ 189 (306)
T 2z66_A 135 HTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTF-------------------------LDLSQCQLEQ 189 (306)
T ss_dssp TSCCEECSTTTTTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCE-------------------------EECTTSCCCE
T ss_pred CCcCCccchhhcccCcCCCEEECCCCccccccchhHHhhCcCCCE-------------------------EECCCCCcCC
Confidence 666666666666666666666666666654 34544554444443 3333333333
Q ss_pred CCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccccccccccccc-ccceEcCCCcccccccc--cc
Q 047768 504 SLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLT-SIKELDLSQNNFSGQIP--KY 580 (1009)
Q Consensus 504 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p--~~ 580 (1009)
..|..|..+++|++|++++|++++..+..+..+++|+.|+|++|++++..|..+..++ +|++|+|++|.+++..+ ..
T Consensus 190 ~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~~~~~c~~~~~ 269 (306)
T 2z66_A 190 LSPTAFNSLSSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQNDFACTCEHQSF 269 (306)
T ss_dssp ECTTTTTTCTTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCCEECSGGGHHH
T ss_pred cCHHHhcCCCCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCCeecccChHHH
Confidence 3344445555555555555555544444555555555555555555555555555552 55555555555554321 11
Q ss_pred cccccccCceecccccCcccCC
Q 047768 581 LENLSFLQYLNLSYNHFEGEVP 602 (1009)
Q Consensus 581 ~~~l~~L~~L~ls~N~l~g~~p 602 (1009)
...+...+.+.+..|.+.+..|
T Consensus 270 ~~~l~~~~~~~~~~~~~~C~~p 291 (306)
T 2z66_A 270 LQWIKDQRQLLVEVERMECATP 291 (306)
T ss_dssp HHHHHHTGGGBSCGGGCBEEES
T ss_pred HHHHHhhhhhhccccccccCCc
Confidence 2223334444444455544444
No 305
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.96 E-value=1.4e-28 Score=272.90 Aligned_cols=225 Identities=20% Similarity=0.274 Sum_probs=175.5
Q ss_pred cccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCccccccee
Q 047768 343 TKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLH 422 (1009)
Q Consensus 343 ~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 422 (1009)
++++.|+|++|+++ .+|..+..+ ..|++|+|++|.++ .+|..+.++++|++|+|++|+++ .+|..+..+++|++|+
T Consensus 81 ~~l~~L~L~~n~l~-~lp~~l~~l-~~L~~L~L~~n~l~-~lp~~~~~l~~L~~L~Ls~n~l~-~lp~~l~~l~~L~~L~ 156 (328)
T 4fcg_A 81 PGRVALELRSVPLP-QFPDQAFRL-SHLQHMTIDAAGLM-ELPDTMQQFAGLETLTLARNPLR-ALPASIASLNRLRELS 156 (328)
T ss_dssp TTCCEEEEESSCCS-SCCSCGGGG-TTCSEEEEESSCCC-CCCSCGGGGTTCSEEEEESCCCC-CCCGGGGGCTTCCEEE
T ss_pred cceeEEEccCCCch-hcChhhhhC-CCCCEEECCCCCcc-chhHHHhccCCCCEEECCCCccc-cCcHHHhcCcCCCEEE
Confidence 56777777777776 556666665 56777777777777 66777777777777777777777 6677777777777777
Q ss_pred cccccccCCCCccccc---------ccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceee
Q 047768 423 LHANFLQGTIPSSLGN---------LTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLS 493 (1009)
Q Consensus 423 L~~N~l~~~~p~~~~~---------l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~ 493 (1009)
|++|++.+.+|..+.. +++|++|++++|+++ .+|..++++++|++
T Consensus 157 L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~------------------------- 210 (328)
T 4fcg_A 157 IRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKS------------------------- 210 (328)
T ss_dssp EEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCE-------------------------
T ss_pred CCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCE-------------------------
Confidence 7777776677766544 666666666666666 56666666665554
Q ss_pred EecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccc
Q 047768 494 LDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNF 573 (1009)
Q Consensus 494 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 573 (1009)
|+|++|++++ +|..++.+++|++|++++|.+.+.+|..++.+++|++|+|++|++.+.+|..++++++|++|||++|++
T Consensus 211 L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~~n~~ 289 (328)
T 4fcg_A 211 LKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPIFGGRAPLKRLILKDCSNLLTLPLDIHRLTQLEKLDLRGCVN 289 (328)
T ss_dssp EEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCCTTCCCCCCEEECTTCTTCCBCCTTGGGCTTCCEEECTTCTT
T ss_pred EEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHHhcCCCCCCEEECCCCCchhhcchhhhcCCCCCEEeCCCCCc
Confidence 5666666663 566788899999999999999999999999999999999999999999999999999999999999999
Q ss_pred ccccccccccccccCceecccccCc
Q 047768 574 SGQIPKYLENLSFLQYLNLSYNHFE 598 (1009)
Q Consensus 574 ~~~~p~~~~~l~~L~~L~ls~N~l~ 598 (1009)
.+.+|..+.++++|+.+++..|.+.
T Consensus 290 ~~~iP~~l~~L~~L~~l~l~~~~~~ 314 (328)
T 4fcg_A 290 LSRLPSLIAQLPANCIILVPPHLQA 314 (328)
T ss_dssp CCCCCGGGGGSCTTCEEECCGGGSC
T ss_pred hhhccHHHhhccCceEEeCCHHHHH
Confidence 9999999999999999999987664
No 306
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=3.4e-28 Score=283.11 Aligned_cols=254 Identities=20% Similarity=0.216 Sum_probs=202.2
Q ss_pred cceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecc
Q 047768 345 LQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLH 424 (1009)
Q Consensus 345 L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 424 (1009)
...++.+++.++ .+|..+. ..++.|+|++|+|++..|..|.++++|+.|+|++|+|++..|..|.++++|++|+|+
T Consensus 56 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~ 131 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGIP---SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELF 131 (452)
T ss_dssp SCEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECC
T ss_pred CcEEEECCCCcC-ccCCCCC---CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECC
Confidence 456667777666 3454332 457777777777777777777777777777777777777777777777777777777
Q ss_pred cccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCC
Q 047768 425 ANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGS 504 (1009)
Q Consensus 425 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~ 504 (1009)
+|++++..+..|.++++|++|+|++|++++..+..|.++++|+.|++++|...+.+|...+.....+..|+|++|++++
T Consensus 132 ~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~- 210 (452)
T 3zyi_A 132 DNWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLEYISEGAFEGLFNLKYLNLGMCNIKD- 210 (452)
T ss_dssp SSCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCTTCCEEECTTSCCSS-
T ss_pred CCcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCccccChhhccCCCCCCEEECCCCcccc-
Confidence 7777766666677777777777777777766666777777777777777555445665544444444568888888885
Q ss_pred CCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccc
Q 047768 505 LPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENL 584 (1009)
Q Consensus 505 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 584 (1009)
+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|+.|||++|+|++..+..|..+
T Consensus 211 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 289 (452)
T 3zyi_A 211 MP-NLTPLVGLEELEMSGNHFPEIRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPL 289 (452)
T ss_dssp CC-CCTTCTTCCEEECTTSCCSEECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTC
T ss_pred cc-cccccccccEEECcCCcCcccCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccc
Confidence 44 58899999999999999999889999999999999999999999999999999999999999999998888889999
Q ss_pred cccCceecccccCcccCCCC
Q 047768 585 SFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 585 ~~L~~L~ls~N~l~g~~p~~ 604 (1009)
++|+.|+|++|++.+.+...
T Consensus 290 ~~L~~L~L~~Np~~CdC~~~ 309 (452)
T 3zyi_A 290 RYLVELHLHHNPWNCDCDIL 309 (452)
T ss_dssp TTCCEEECCSSCEECSTTTH
T ss_pred cCCCEEEccCCCcCCCCCch
Confidence 99999999999999887653
No 307
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.95 E-value=1.2e-28 Score=268.44 Aligned_cols=253 Identities=22% Similarity=0.217 Sum_probs=191.5
Q ss_pred ceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceeccc
Q 047768 346 QYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHA 425 (1009)
Q Consensus 346 ~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 425 (1009)
+.++.+++.++ .+|..+ ...++.|++++|.+++..+..|.++++|++|+|++|++++..|..|..+++|++|+|++
T Consensus 14 ~~~~c~~~~l~-~ip~~~---~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 89 (285)
T 1ozn_A 14 VTTSCPQQGLQ-AVPVGI---PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSD 89 (285)
T ss_dssp CEEECCSSCCS-SCCTTC---CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eEEEcCcCCcc-cCCcCC---CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCC
Confidence 56777777777 344433 35678888888888877777888888888888888888877788888888888888888
Q ss_pred cc-ccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCC
Q 047768 426 NF-LQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGS 504 (1009)
Q Consensus 426 N~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~ 504 (1009)
|+ ++...|..|..+++|++|++++|++++..|..+.++++|++|+ +++|++++.
T Consensus 90 n~~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~-------------------------l~~n~l~~~ 144 (285)
T 1ozn_A 90 NAQLRSVDPATFHGLGRLHTLHLDRCGLQELGPGLFRGLAALQYLY-------------------------LQDNALQAL 144 (285)
T ss_dssp CTTCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEE-------------------------CCSSCCCCC
T ss_pred CCCccccCHHHhcCCcCCCEEECCCCcCCEECHhHhhCCcCCCEEE-------------------------CCCCccccc
Confidence 87 7766677888888888888888888877777788787777644 444444444
Q ss_pred CCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccc
Q 047768 505 LPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENL 584 (1009)
Q Consensus 505 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 584 (1009)
.+..|+++++|++|++++|++++..+..+..+++|+.|+|++|++++..|..|+++++|+.|+|++|++++..|..+..+
T Consensus 145 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l 224 (285)
T 1ozn_A 145 PDDTFRDLGNLTHLFLHGNRISSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPL 224 (285)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTC
T ss_pred CHhHhccCCCccEEECCCCcccccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccC
Confidence 45557778888888888888886666678888888888888888888778888888888888888888887666778888
Q ss_pred cccCceecccccCcccCCCCCcccCccccccccCCCcCCCCCC
Q 047768 585 SFLQYLNLSYNHFEGEVPTKGIFKNKTGFSIVGNGKLCGGLDE 627 (1009)
Q Consensus 585 ~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~ 627 (1009)
++|++|++++|++.+.++..+.+..+.......+...|..|..
T Consensus 225 ~~L~~L~l~~N~~~c~~~~~~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 225 RALQYLRLNDNPWVCDCRARPLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp TTCCEEECCSSCEECSGGGHHHHHHHHHCCSEECCCBEEESGG
T ss_pred cccCEEeccCCCccCCCCcHHHHHHHHhcccccCccccCCchH
Confidence 8888888888888887765433333333444456666665544
No 308
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=4.3e-28 Score=281.26 Aligned_cols=254 Identities=19% Similarity=0.177 Sum_probs=188.3
Q ss_pred cceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecc
Q 047768 345 LQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLH 424 (1009)
Q Consensus 345 L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 424 (1009)
...++.+++.++ .+|..+. ..++.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|.++++|++|+|+
T Consensus 45 ~~~v~c~~~~l~-~iP~~~~---~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~ 120 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGIS---TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELF 120 (440)
T ss_dssp SCEEECCSCCCS-SCCSCCC---TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECC
T ss_pred CCEEEeCCCCcC-cCCCCCC---CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECC
Confidence 345566666665 3444332 346666666666666666666666666666666666666666666666666666666
Q ss_pred cccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCC
Q 047768 425 ANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGS 504 (1009)
Q Consensus 425 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~ 504 (1009)
+|++++..+..|.++++|++|+|++|++++..+..|.++++|+.|++++|...+.++...+.....+..|+|++|+++ .
T Consensus 121 ~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~-~ 199 (440)
T 3zyj_A 121 DNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLR-E 199 (440)
T ss_dssp SSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCS-S
T ss_pred CCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCc-c
Confidence 666665555566666666666666666665555566666666666666644444555544433334445777777777 4
Q ss_pred CCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccc
Q 047768 505 LPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENL 584 (1009)
Q Consensus 505 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 584 (1009)
+| .+..+++|++|+|++|++++..|..|.++++|+.|+|++|++++..|..|.++++|++|||++|+|++..+..|..+
T Consensus 200 ~~-~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 278 (440)
T 3zyj_A 200 IP-NLTPLIKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPL 278 (440)
T ss_dssp CC-CCTTCSSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSC
T ss_pred cc-ccCCCcccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccc
Confidence 55 48889999999999999999889999999999999999999999999999999999999999999998888889999
Q ss_pred cccCceecccccCcccCCCC
Q 047768 585 SFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 585 ~~L~~L~ls~N~l~g~~p~~ 604 (1009)
++|+.|+|++|++.+.+...
T Consensus 279 ~~L~~L~L~~Np~~CdC~l~ 298 (440)
T 3zyj_A 279 HHLERIHLHHNPWNCNCDIL 298 (440)
T ss_dssp TTCCEEECCSSCEECSSTTH
T ss_pred cCCCEEEcCCCCccCCCCch
Confidence 99999999999999877643
No 309
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=1.5e-29 Score=278.99 Aligned_cols=249 Identities=18% Similarity=0.168 Sum_probs=156.2
Q ss_pred cccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCcc-ccCCCcccc-------CcCccCEEEccCCCCCCCCCCCc
Q 047768 341 NCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQI-YGTIPPGIA-------NLVNLNSLRMEANRLTGTIPHVI 412 (1009)
Q Consensus 341 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l-~~~~p~~~~-------~l~~L~~L~L~~N~l~~~~p~~~ 412 (1009)
..++|+.|++++|.+ .+|..+... ++.|+|++|++ ...+|..+. ++++|++|+|++|++++.+|..+
T Consensus 41 ~~~~L~~l~l~~n~l--~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~ 115 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE--ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPL 115 (312)
T ss_dssp EEEECTTHHHHCCTT--CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCS
T ss_pred cCCCceeEeeccccc--ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHH
Confidence 344455555555555 344443332 44455555555 223343333 45555555555555555555544
Q ss_pred --CCcccccceecccccccCCCCcccccc-----cccccccccCcccccccCCCCCCCCCccccccCCCCccCCC--chh
Q 047768 413 --GELKNLQLLHLHANFLQGTIPSSLGNL-----TLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGAL--PQQ 483 (1009)
Q Consensus 413 --~~l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~--p~~ 483 (1009)
..+++|++|+|++|++++. |..++.+ ++|++|++++|++++..|..++++++|++|++++|++++.+ |..
T Consensus 116 ~~~~l~~L~~L~Ls~N~l~~~-~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~ 194 (312)
T 1wwl_A 116 LEATGPDLNILNLRNVSWATR-DAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISA 194 (312)
T ss_dssp SSCCSCCCSEEEEESCBCSSS-SSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHH
T ss_pred HHhcCCCccEEEccCCCCcch-hHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHH
Confidence 5555555555555555544 5555555 55555666666555555555555555666666555554431 222
Q ss_pred h-hhhccceeeEecCCCccCC--CCC-CCccCCCCCCeeeccccccCCCcc-ccccCCCCccEEEecCcccccccccccc
Q 047768 484 I-LEITTLSLSLDLSDNLLNG--SLP-LGVGNLKSLVRLGIARNQFSGQIP-VTLGACTSLEYVELQGNSFSGTIPQSLS 558 (1009)
Q Consensus 484 ~-~~~~~~~~~L~Ls~N~l~~--~~p-~~~~~l~~L~~L~ls~N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~~~ 558 (1009)
+ +........|++++|++++ .++ ..+.++++|++|++++|++++.+| ..+..+++|++|+|++|+|+ .+|..+.
T Consensus 195 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~Ls~N~l~-~ip~~~~ 273 (312)
T 1wwl_A 195 LCPLKFPTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQLNSLNLSFTGLK-QVPKGLP 273 (312)
T ss_dssp SCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTTCCEEECTTSCCS-SCCSSCC
T ss_pred HHhccCCCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCCCCEEECCCCccC-hhhhhcc
Confidence 2 1222223346666666662 122 234577899999999999998775 56677899999999999998 7888777
Q ss_pred cccccceEcCCCcccccccccccccccccCceecccccCccc
Q 047768 559 SLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGE 600 (1009)
Q Consensus 559 ~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ 600 (1009)
++|++|||++|+|++. |. +..+++|++|+|++|+++++
T Consensus 274 --~~L~~L~Ls~N~l~~~-p~-~~~l~~L~~L~L~~N~l~~~ 311 (312)
T 1wwl_A 274 --AKLSVLDLSYNRLDRN-PS-PDELPQVGNLSLKGNPFLDS 311 (312)
T ss_dssp --SEEEEEECCSSCCCSC-CC-TTTSCEEEEEECTTCTTTCC
T ss_pred --CCceEEECCCCCCCCC-hh-HhhCCCCCEEeccCCCCCCC
Confidence 8999999999999965 66 89999999999999999763
No 310
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.95 E-value=2.5e-30 Score=285.35 Aligned_cols=247 Identities=18% Similarity=0.172 Sum_probs=126.9
Q ss_pred eEEEEEeecCCcccccCccccCCCCCCeeeecCCcC-CccCCcccc-------CccccccccccccccCCCCCCCC--cC
Q 047768 71 RVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDF-HGEIPDRIG-------NLFRLETLVLANNSFSGRIPTNL--SH 140 (1009)
Q Consensus 71 ~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~-~~~~p~~~~-------~l~~L~~L~Ls~N~l~~~~p~~l--~~ 140 (1009)
+++.|++++|.+ .+|..+... |++|+|++|.+ .+.+|..+. ++++|++|+|++|++++.+|..+ +.
T Consensus 44 ~L~~l~l~~n~l--~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~ 119 (312)
T 1wwl_A 44 SLEYLLKRVDTE--ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLEAT 119 (312)
T ss_dssp ECTTHHHHCCTT--CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSSCC
T ss_pred CceeEeeccccc--ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHHhc
Confidence 445555555555 444433322 55555555555 334454444 45555555555555555555544 55
Q ss_pred CCcCcEEecccccccCCCchHHhhhcc-----CCcCeEeecCccCCCCCCcccCCccccceeecccCcccCC--CCccc-
Q 047768 141 CSKLITFSAHRNNLVGEIPEELISRRL-----FNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGK--IPITL- 212 (1009)
Q Consensus 141 l~~L~~L~l~~n~l~~~~p~~~~~~~l-----~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~p~~~- 212 (1009)
+++|++|++++|.+++. |..+ ..+ ++|++|+|++|++++..|..|+++++|++|+|++|++.+. .|..+
T Consensus 120 l~~L~~L~Ls~N~l~~~-~~~~--~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~ 196 (312)
T 1wwl_A 120 GPDLNILNLRNVSWATR-DAWL--AELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLSDNPELGERGLISALC 196 (312)
T ss_dssp SCCCSEEEEESCBCSSS-SSHH--HHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECCSCTTCHHHHHHHHSC
T ss_pred CCCccEEEccCCCCcch-hHHH--HHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECCCCCcCcchHHHHHHH
Confidence 55555555555555544 4333 222 4555555555555544445555555555555555554332 12222
Q ss_pred -ccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCC-CCcCcccc
Q 047768 213 -SQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLP-DSFSNASN 290 (1009)
Q Consensus 213 -~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~ 290 (1009)
..+++|++|+|++|++++ ++ .++..++.++++|++|+|++|++++..| ..+..+++
T Consensus 197 ~~~l~~L~~L~L~~N~l~~-~~---------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~l~~ 254 (312)
T 1wwl_A 197 PLKFPTLQVLALRNAGMET-PS---------------------GVCSALAAARVQLQGLDLSHNSLRDAAGAPSCDWPSQ 254 (312)
T ss_dssp TTSCTTCCEEECTTSCCCC-HH---------------------HHHHHHHHTTCCCSEEECTTSCCCSSCCCSCCCCCTT
T ss_pred hccCCCCCEEECCCCcCcc-hH---------------------HHHHHHHhcCCCCCEEECCCCcCCcccchhhhhhcCC
Confidence 445555555555555441 10 2223334445566666666666655543 34445566
Q ss_pred cccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCC
Q 047768 291 LEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGG 357 (1009)
Q Consensus 291 L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~ 357 (1009)
|++|+|++|+|+.++...+ ++|+.|+|++|.|+..+ . +..+++|++|+|++|++++
T Consensus 255 L~~L~Ls~N~l~~ip~~~~---~~L~~L~Ls~N~l~~~p-------~-~~~l~~L~~L~L~~N~l~~ 310 (312)
T 1wwl_A 255 LNSLNLSFTGLKQVPKGLP---AKLSVLDLSYNRLDRNP-------S-PDELPQVGNLSLKGNPFLD 310 (312)
T ss_dssp CCEEECTTSCCSSCCSSCC---SEEEEEECCSSCCCSCC-------C-TTTSCEEEEEECTTCTTTC
T ss_pred CCEEECCCCccChhhhhcc---CCceEEECCCCCCCCCh-------h-HhhCCCCCEEeccCCCCCC
Confidence 6666666666653333222 55666666666665442 1 4566777777777777764
No 311
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=1.2e-28 Score=293.81 Aligned_cols=100 Identities=21% Similarity=0.305 Sum_probs=52.5
Q ss_pred CCCCCCCccCCCCCCCCCccceeeC------CCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCcccc
Q 047768 42 LGVTSSWNRSACVNLCQHWTGVTCG------RRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIG 115 (1009)
Q Consensus 42 ~~~~~sW~~~~~~~~c~~w~gv~C~------~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~ 115 (1009)
...+++|... .+ ||.|+|..|. -....++.|++++++++ .+|..+. ++|++|+|++|+|+ .+|.
T Consensus 9 ~~~w~~W~~~--~~-~~~~~~r~~~~~~~~~c~~~~l~~L~ls~n~L~-~lp~~l~--~~L~~L~L~~N~l~-~lp~--- 78 (622)
T 3g06_A 9 DAVWSAWRRA--AP-AEESRGRAAVVQKMRACLNNGNAVLNVGESGLT-TLPDCLP--AHITTLVIPDNNLT-SLPA--- 78 (622)
T ss_dssp -CHHHHHHHT--CC-GGGHHHHHHHHHHHHHHHHHCCCEEECCSSCCS-CCCSCCC--TTCSEEEECSCCCS-CCCC---
T ss_pred HHHHHHHHhc--CC-cchhccccccCcccccccCCCCcEEEecCCCcC-ccChhhC--CCCcEEEecCCCCC-CCCC---
Confidence 3455678654 23 4489775321 11123566666666665 4444443 56666666666666 4554
Q ss_pred CccccccccccccccCCCCCCCCcCCCcCcEEeccccccc
Q 047768 116 NLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLV 155 (1009)
Q Consensus 116 ~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~ 155 (1009)
.+++|++|||++|+|+ .+|. .+++|++|++++|+++
T Consensus 79 ~l~~L~~L~Ls~N~l~-~lp~---~l~~L~~L~Ls~N~l~ 114 (622)
T 3g06_A 79 LPPELRTLEVSGNQLT-SLPV---LPPGLLELSIFSNPLT 114 (622)
T ss_dssp CCTTCCEEEECSCCCS-CCCC---CCTTCCEEEECSCCCC
T ss_pred cCCCCCEEEcCCCcCC-cCCC---CCCCCCEEECcCCcCC
Confidence 3456666666666665 3443 3344444444444443
No 312
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.95 E-value=7.3e-28 Score=280.34 Aligned_cols=247 Identities=21% Similarity=0.220 Sum_probs=139.8
Q ss_pred CcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccc
Q 047768 144 LITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHV 223 (1009)
Q Consensus 144 L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 223 (1009)
...++.+++.++ .+|..+ ..+|++|+|++|++++..|..|+++++|++|+|++|++++..+..|.++++|++|+|
T Consensus 56 ~~~v~c~~~~l~-~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L 130 (452)
T 3zyi_A 56 FSKVVCTRRGLS-EVPQGI----PSNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLEL 130 (452)
T ss_dssp SCEEECCSSCCS-SCCSCC----CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CcEEEECCCCcC-ccCCCC----CCCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEEC
Confidence 455666666665 455443 245666666666666555666666666666666666666555566666666666666
Q ss_pred cCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccc-cccc
Q 047768 224 GDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAE-NQFR 302 (1009)
Q Consensus 224 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~ 302 (1009)
++|++++ +|...+.++++|++|+|++|+++.+.+..|.++++|++|+|++ |.+.
T Consensus 131 ~~n~l~~-------------------------~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~~l~ 185 (452)
T 3zyi_A 131 FDNWLTV-------------------------IPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELKKLE 185 (452)
T ss_dssp CSSCCSB-------------------------CCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CCCcCCc-------------------------cChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCCCcc
Confidence 6666553 3333344445555555555555544444555555555555555 3333
Q ss_pred cccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCcccc
Q 047768 303 GQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYG 382 (1009)
Q Consensus 303 ~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~ 382 (1009)
.+.+..|.++++|+.|+|++|.+...+. +..+++|+.|+| ++|+|++
T Consensus 186 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~L~~L~L-------------------------s~N~l~~ 232 (452)
T 3zyi_A 186 YISEGAFEGLFNLKYLNLGMCNIKDMPN--------LTPLVGLEELEM-------------------------SGNHFPE 232 (452)
T ss_dssp EECTTTTTTCTTCCEEECTTSCCSSCCC--------CTTCTTCCEEEC-------------------------TTSCCSE
T ss_pred ccChhhccCCCCCCEEECCCCccccccc--------ccccccccEEEC-------------------------cCCcCcc
Confidence 3333334444333333333333332211 233444444444 4445554
Q ss_pred CCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccc
Q 047768 383 TIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQ 453 (1009)
Q Consensus 383 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 453 (1009)
..|..|.++++|+.|+|++|++++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 233 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 303 (452)
T 3zyi_A 233 IRPGSFHGLSSLKKLWVMNSQVSLIERNAFDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNPWN 303 (452)
T ss_dssp ECGGGGTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSCEE
T ss_pred cCcccccCccCCCEEEeCCCcCceECHHHhcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCCcC
Confidence 55556666666777777777776666666666777777777777776655566666777777777777665
No 313
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=7.1e-29 Score=290.33 Aligned_cols=215 Identities=20% Similarity=0.198 Sum_probs=113.1
Q ss_pred ccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceec
Q 047768 344 KLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHL 423 (1009)
Q Consensus 344 ~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 423 (1009)
+|++|+|++|.+++..|..+..+ +.|++|+|++|.+++..| |..+++|++|+|++|.|++..+ .++|++|+|
T Consensus 35 ~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~Ls~N~l~~l~~-----~~~L~~L~L 106 (487)
T 3oja_A 35 NVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELLV-----GPSIETLHA 106 (487)
T ss_dssp GCCEEECCSSCCCCCCGGGGTTC-TTCCEEECTTSCCEEEEE--CTTCTTCCEEECCSSEEEEEEE-----CTTCCEEEC
T ss_pred CccEEEeeCCcCCCCCHHHHhCC-CCCCEEEeeCCCCCCCcc--cccCCCCCEEEecCCcCCCCCC-----CCCcCEEEC
Confidence 45555555555554444444444 345555555555544333 4445555555555555442221 144555555
Q ss_pred ccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCC
Q 047768 424 HANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNG 503 (1009)
Q Consensus 424 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~ 503 (1009)
++|.+++..+. .+++|++|+|++|++++..|..++++++|+. |+|++|.+++
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~-------------------------L~Ls~N~l~~ 158 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQY-------------------------LDLKLNEIDT 158 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEE-------------------------EECTTSCCCE
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCE-------------------------EECCCCCCCC
Confidence 55555433332 2234444555555554444444444444444 5555555555
Q ss_pred CCCCCcc-CCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccc
Q 047768 504 SLPLGVG-NLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLE 582 (1009)
Q Consensus 504 ~~p~~~~-~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~ 582 (1009)
..|..+. .+++|++|+|++|.|++. | .+..+++|+.|+|++|+|++.+| .++.+++|+.|||++|+|++ +|..+.
T Consensus 159 ~~~~~l~~~l~~L~~L~Ls~N~l~~~-~-~~~~l~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~~l~ 234 (487)
T 3oja_A 159 VNFAELAASSDTLEHLNLQYNFIYDV-K-GQVVFAKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEKALR 234 (487)
T ss_dssp EEGGGGGGGTTTCCEEECTTSCCCEE-E-CCCCCTTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECTTCC
T ss_pred cChHHHhhhCCcccEEecCCCccccc-c-ccccCCCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cchhhc
Confidence 5555554 566666666666666643 2 22246666666666666664333 36666666666666666663 555566
Q ss_pred cccccCceecccccCc
Q 047768 583 NLSFLQYLNLSYNHFE 598 (1009)
Q Consensus 583 ~l~~L~~L~ls~N~l~ 598 (1009)
.+++|+.|++++|++.
T Consensus 235 ~l~~L~~L~l~~N~l~ 250 (487)
T 3oja_A 235 FSQNLEHFDLRGNGFH 250 (487)
T ss_dssp CCTTCCEEECTTCCBC
T ss_pred cCCCCCEEEcCCCCCc
Confidence 6666666666666665
No 314
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.95 E-value=9.2e-28 Score=278.45 Aligned_cols=247 Identities=22% Similarity=0.248 Sum_probs=142.6
Q ss_pred CcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccc
Q 047768 144 LITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHV 223 (1009)
Q Consensus 144 L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 223 (1009)
...++.+++.++ .+|..+ ..+++.|+|++|++++..+..|.++++|++|+|++|++.+..+..|.++++|++|+|
T Consensus 45 ~~~v~c~~~~l~-~iP~~~----~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 45 FSKVICVRKNLR-EVPDGI----STNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp SCEEECCSCCCS-SCCSCC----CTTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CCEEEeCCCCcC-cCCCCC----CCCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 345666666555 455443 245556666666665555555566666666666666655555555555555555555
Q ss_pred cCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccc-cccc
Q 047768 224 GDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAE-NQFR 302 (1009)
Q Consensus 224 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~-N~l~ 302 (1009)
++|+++ .+|...+.++++|++|+|++|.++.+.+..|.++++|++|+|++ |.+.
T Consensus 120 ~~n~l~-------------------------~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~ 174 (440)
T 3zyj_A 120 FDNRLT-------------------------TIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLS 174 (440)
T ss_dssp CSSCCS-------------------------SCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCC
T ss_pred CCCcCC-------------------------eeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcc
Confidence 555555 33333334445555555555555544445555555555555555 3333
Q ss_pred cccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCcccc
Q 047768 303 GQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYG 382 (1009)
Q Consensus 303 ~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~ 382 (1009)
.+.+..|.++++|+.|+|++|.+..++. +..+++ |+.|+|++|+|++
T Consensus 175 ~i~~~~~~~l~~L~~L~L~~n~l~~~~~--------~~~l~~-------------------------L~~L~Ls~N~l~~ 221 (440)
T 3zyj_A 175 YISEGAFEGLSNLRYLNLAMCNLREIPN--------LTPLIK-------------------------LDELDLSGNHLSA 221 (440)
T ss_dssp EECTTTTTTCSSCCEEECTTSCCSSCCC--------CTTCSS-------------------------CCEEECTTSCCCE
T ss_pred eeCcchhhcccccCeecCCCCcCccccc--------cCCCcc-------------------------cCEEECCCCccCc
Confidence 3333334444333333333333332211 233334 5555555555555
Q ss_pred CCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccc
Q 047768 383 TIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQ 453 (1009)
Q Consensus 383 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 453 (1009)
..|..|.++++|+.|+|++|+|++..+..|.++++|++|+|++|+|++..+..|..+++|++|+|++|.+.
T Consensus 222 ~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np~~ 292 (440)
T 3zyj_A 222 IRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNLQSLVEINLAHNNLTLLPHDLFTPLHHLERIHLHHNPWN 292 (440)
T ss_dssp ECTTTTTTCTTCCEEECTTCCCCEECTTSSTTCTTCCEEECTTSCCCCCCTTTTSSCTTCCEEECCSSCEE
T ss_pred cChhhhccCccCCEEECCCCceeEEChhhhcCCCCCCEEECCCCCCCccChhHhccccCCCEEEcCCCCcc
Confidence 55666777777777777777777777777777777777777777777666667777777777777777776
No 315
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.95 E-value=2.3e-27 Score=282.79 Aligned_cols=69 Identities=22% Similarity=0.354 Sum_probs=44.8
Q ss_pred CCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccccccccccccccc
Q 047768 512 LKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLS 585 (1009)
Q Consensus 512 l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~ 585 (1009)
+++|+.|+|++|+|+ .+|. .+++|+.|+|++|+|+ .+|..|+++++|+.|+|++|.+++.+|..+..++
T Consensus 240 l~~L~~L~Ls~N~L~-~lp~---~~~~L~~L~Ls~N~L~-~lp~~l~~l~~L~~L~L~~N~l~~~~~~~l~~L~ 308 (622)
T 3g06_A 240 PSELKELMVSGNRLT-SLPM---LPSGLLSLSVYRNQLT-RLPESLIHLSSETTVNLEGNPLSERTLQALREIT 308 (622)
T ss_dssp CTTCCEEECCSSCCS-CCCC---CCTTCCEEECCSSCCC-SCCGGGGGSCTTCEEECCSCCCCHHHHHHHHHHH
T ss_pred CCcCcEEECCCCCCC-cCCc---ccccCcEEeCCCCCCC-cCCHHHhhccccCEEEecCCCCCCcCHHHHHhcc
Confidence 456666667776666 3444 4566677777777776 5566666777777777777777766666655554
No 316
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.95 E-value=1.7e-30 Score=314.41 Aligned_cols=425 Identities=16% Similarity=0.113 Sum_probs=251.8
Q ss_pred CeEEEEEeecCCc---ccccCcccc------------CCCCCCeeeecCCcCCccCCccccCc--cccccccccccc-cC
Q 047768 70 QRVTKLDLRNQSI---GGILSPYVG------------NLSFLRYINIADNDFHGEIPDRIGNL--FRLETLVLANNS-FS 131 (1009)
Q Consensus 70 ~~v~~l~l~~~~l---~~~~~~~~~------------~l~~L~~L~L~~n~~~~~~p~~~~~l--~~L~~L~Ls~N~-l~ 131 (1009)
++++.|+|+++.. .+.+|..++ .+++|++|+|++|.+++..+..++.+ .+|++|+|++|. ++
T Consensus 73 ~~L~~L~L~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~ 152 (592)
T 3ogk_B 73 PNLRSLKLKGKPRAAMFNLIPENWGGYVTPWVTEISNNLRQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT 152 (592)
T ss_dssp TTCSEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE
T ss_pred CCCeEEEecCCcchhhcccccccccccchHHHHHHHhhCCCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC
Confidence 3588999987432 234443333 78999999999999998888888774 459999999987 22
Q ss_pred C-CCCCCCcCCCcCcEEecccccccCCCchH--HhhhccCCcCeEeecCccCCC----CCCcccCCccccceeecccCcc
Q 047768 132 G-RIPTNLSHCSKLITFSAHRNNLVGEIPEE--LISRRLFNLQGLSVGDNQLTG----QLPASIGNLSALRVIDIRTNRL 204 (1009)
Q Consensus 132 ~-~~p~~l~~l~~L~~L~l~~n~l~~~~p~~--~~~~~l~~L~~L~L~~n~l~~----~~p~~~~~l~~L~~L~L~~N~l 204 (1009)
. .++....++++|++|++++|.+++.-+.. .+...+++|++|++++|.+++ .++..+.++++|++|++++|.+
T Consensus 153 ~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~ 232 (592)
T 3ogk_B 153 TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQHNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEI 232 (592)
T ss_dssp HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHHHCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBG
T ss_pred HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHhcCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccH
Confidence 1 12233458899999999999987663221 122578999999999999983 3455567899999999999999
Q ss_pred cCCCCcccccccccccccccCccCC---CCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCC
Q 047768 205 WGKIPITLSQLTSLAYLHVGDNHFS---GTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSL 281 (1009)
Q Consensus 205 ~~~~p~~~~~l~~L~~L~L~~N~l~---~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~ 281 (1009)
.+ +|..+..+++|++|+++.+... +..+..+.. +++|+.|+++++.. ..+
T Consensus 233 ~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~-------------------------~~~L~~L~l~~~~~-~~l 285 (592)
T 3ogk_B 233 LE-LVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVF-------------------------PRKLCRLGLSYMGP-NEM 285 (592)
T ss_dssp GG-GHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCC-------------------------CTTCCEEEETTCCT-TTG
T ss_pred HH-HHHHHhhhhHHHhhcccccccccchHHHHHHhhc-------------------------cccccccCccccch-hHH
Confidence 75 7788999999999999864332 122233333 34455555544322 234
Q ss_pred CCCcCcccccccccccccccccccc-cccccccccccccccccccCCCCCCCcchhhhcccccccceEEccC--------
Q 047768 282 PDSFSNASNLEVLHLAENQFRGQVS-INFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLAD-------- 352 (1009)
Q Consensus 282 p~~~~~l~~L~~L~Ls~N~l~~~~~-~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~-------- 352 (1009)
|..+..+++|++|+|++|.+++... ..+..+++|+.|+++ |.+.. ..+......+++|++|++++
T Consensus 286 ~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~-~~~~~-----~~l~~~~~~~~~L~~L~L~~g~~~~~~~ 359 (592)
T 3ogk_B 286 PILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETR-NVIGD-----RGLEVLAQYCKQLKRLRIERGADEQGME 359 (592)
T ss_dssp GGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEE-GGGHH-----HHHHHHHHHCTTCCEEEEECCCCSSTTS
T ss_pred HHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEecc-CccCH-----HHHHHHHHhCCCCCEEEeecCccccccc
Confidence 4555556666666666666543322 224556666666666 32221 11223445677888888883
Q ss_pred ---CCCCCcCchhhhhhcccceEEEcCCCccccCCCccccC-cCccCEEEcc----CCCCCCCCCCCcCCcccccceecc
Q 047768 353 ---NGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIAN-LVNLNSLRME----ANRLTGTIPHVIGELKNLQLLHLH 424 (1009)
Q Consensus 353 ---N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~----~N~l~~~~p~~~~~l~~L~~L~L~ 424 (1009)
|.+++.....+.....+|++|+++.|++++..+..+.. +++|+.|+++ .|++++...+.
T Consensus 360 ~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~------------- 426 (592)
T 3ogk_B 360 DEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDN------------- 426 (592)
T ss_dssp STTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHH-------------
T ss_pred cccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHH-------------
Confidence 55553322222222234555555555554444434433 5555555554 44444321100
Q ss_pred cccccCCCCcccccccccccccccCc--ccccccCCCCC-CCCCccccccCCCCccCCCchhhhhhccceeeEecCCCcc
Q 047768 425 ANFLQGTIPSSLGNLTLLTYLSFGAN--NLQGNIPFSLG-NCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLL 501 (1009)
Q Consensus 425 ~N~l~~~~p~~~~~l~~L~~L~L~~N--~l~~~~p~~~~-~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l 501 (1009)
.++..+.++++|++|+++++ .+++..+..+. .+++|++|++++|++
T Consensus 427 ------~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l------------------------- 475 (592)
T 3ogk_B 427 ------GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGE------------------------- 475 (592)
T ss_dssp ------HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCS-------------------------
T ss_pred ------HHHHHHHhCCCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCC-------------------------
Confidence 01122333444444444321 23322221111 133344333333332
Q ss_pred CC-CCCCCccCCCCCCeeeccccccCCC-ccccccCCCCccEEEecCccccccccccc-ccccccceEcCCCc
Q 047768 502 NG-SLPLGVGNLKSLVRLGIARNQFSGQ-IPVTLGACTSLEYVELQGNSFSGTIPQSL-SSLTSIKELDLSQN 571 (1009)
Q Consensus 502 ~~-~~p~~~~~l~~L~~L~ls~N~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~Ls~N 571 (1009)
++ .++..+..+++|++|++++|.+++. ++..+..+++|++|+|++|++++.-...+ ..++.+....+..+
T Consensus 476 ~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 476 SDEGLMEFSRGCPNLQKLEMRGCCFSERAIAAAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp SHHHHHHHHTCCTTCCEEEEESCCCBHHHHHHHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred CHHHHHHHHhcCcccCeeeccCCCCcHHHHHHHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 22 1222345678899999999998754 34455678999999999999886533333 35666666655554
No 317
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.9e-29 Score=277.46 Aligned_cols=256 Identities=16% Similarity=0.205 Sum_probs=161.9
Q ss_pred CCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcc
Q 047768 255 SLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLD 334 (1009)
Q Consensus 255 ~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~ 334 (1009)
..+..++..+++|++|+|++|++++..|..|.++++|++|+|++|++++..+ |..+
T Consensus 24 ~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~--~~~l---------------------- 79 (317)
T 3o53_A 24 QALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD--LESL---------------------- 79 (317)
T ss_dssp HHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE--ETTC----------------------
T ss_pred hhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh--hhhc----------------------
Confidence 3444455556777777777777777777777777777777777777765443 4344
Q ss_pred hhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCC
Q 047768 335 FVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGE 414 (1009)
Q Consensus 335 ~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 414 (1009)
++|++|+|++|++++..+. ..|+.|++++|++++..+.. +++|+.|++++|++++..|..+..
T Consensus 80 --------~~L~~L~Ls~n~l~~l~~~------~~L~~L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~ 142 (317)
T 3o53_A 80 --------STLRTLDLNNNYVQELLVG------PSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGC 142 (317)
T ss_dssp --------TTCCEEECCSSEEEEEEEC------TTCCEEECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGG
T ss_pred --------CCCCEEECcCCccccccCC------CCcCEEECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhc
Confidence 3444444444444321110 23344444444444332222 345566666666666555555555
Q ss_pred cccccceecccccccCCCCcccc-cccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceee
Q 047768 415 LKNLQLLHLHANFLQGTIPSSLG-NLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLS 493 (1009)
Q Consensus 415 l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~ 493 (1009)
+++|++|+|++|++++..|..+. .+++|++|++++|++++.
T Consensus 143 l~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-------------------------------------- 184 (317)
T 3o53_A 143 RSRVQYLDLKLNEIDTVNFAELAASSDTLEHLNLQYNFIYDV-------------------------------------- 184 (317)
T ss_dssp GSSEEEEECTTSCCCEEEGGGGGGGTTTCCEEECTTSCCCEE--------------------------------------
T ss_pred cCCCCEEECCCCCCCcccHHHHhhccCcCCEEECCCCcCccc--------------------------------------
Confidence 66666666666666554444432 445555555555554421
Q ss_pred EecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccc
Q 047768 494 LDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNF 573 (1009)
Q Consensus 494 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 573 (1009)
| ....+++|++|+|++|++++ +|..+..+++|+.|+|++|+|+ .+|..+..+++|+.|+|++|.+
T Consensus 185 ------------~-~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~~~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 185 ------------K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEKALRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp ------------E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECTTCCCCTTCCEEECTTCCC
T ss_pred ------------c-cccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhhHhhcCCCCCEEEccCCCc
Confidence 1 11236678888888888884 5556888888888888888888 5677888888899999999988
Q ss_pred c-cccccccccccccCceecc-cccCcccCCCC
Q 047768 574 S-GQIPKYLENLSFLQYLNLS-YNHFEGEVPTK 604 (1009)
Q Consensus 574 ~-~~~p~~~~~l~~L~~L~ls-~N~l~g~~p~~ 604 (1009)
+ +.+|..+..+++|+.|+++ .+.++|..|..
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~~~~~~ 282 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTGQNEEE 282 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHSSSSCC
T ss_pred cCcCHHHHHhccccceEEECCCchhccCCchhc
Confidence 8 7788888888889999888 55677776654
No 318
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.94 E-value=4.8e-27 Score=255.69 Aligned_cols=235 Identities=23% Similarity=0.225 Sum_probs=191.4
Q ss_pred cccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCC-CCCCCCCCcCCcccccce
Q 047768 343 TKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANR-LTGTIPHVIGELKNLQLL 421 (1009)
Q Consensus 343 ~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L 421 (1009)
++|++|+|++|++++..+..+..+ ..|++|+|++|.+++..|..|.++++|++|+|++|+ +++..|..|..+++|++|
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L 110 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRAC-RNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTL 110 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEE
T ss_pred CCceEEEeeCCcCCccCHHHcccC-CCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEE
Confidence 578888888888887666677666 578888888888888888889999999999999997 887778889999999999
Q ss_pred ecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCcc
Q 047768 422 HLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLL 501 (1009)
Q Consensus 422 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l 501 (1009)
+|++|++++..|..|.++++|++|++++|++++..+..+..+++|++|++++| ++
T Consensus 111 ~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-------------------------~l 165 (285)
T 1ozn_A 111 HLDRCGLQELGPGLFRGLAALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGN-------------------------RI 165 (285)
T ss_dssp ECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS-------------------------CC
T ss_pred ECCCCcCCEECHhHhhCCcCCCEEECCCCcccccCHhHhccCCCccEEECCCC-------------------------cc
Confidence 99999999888888899999999999999998766677888888776544444 44
Q ss_pred CCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccccccccccc
Q 047768 502 NGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYL 581 (1009)
Q Consensus 502 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 581 (1009)
++..+..|..+++|++|++++|.+++..|..+..+++|+.|+|++|++++..+..+..+++|++|+|++|.+....+..
T Consensus 166 ~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~~~~- 244 (285)
T 1ozn_A 166 SSVPERAFRGLHSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNPWVCDCRAR- 244 (285)
T ss_dssp CEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSCEECSGGGH-
T ss_pred cccCHHHhcCccccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCCccCCCCcH-
Confidence 4344455778889999999999999888899999999999999999999877778999999999999999998654432
Q ss_pred ccccccCceecccccCcccCCCC
Q 047768 582 ENLSFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 582 ~~l~~L~~L~ls~N~l~g~~p~~ 604 (1009)
.-...++.+..+.|.+.+..|..
T Consensus 245 ~~~~~l~~~~~~~~~~~c~~p~~ 267 (285)
T 1ozn_A 245 PLWAWLQKFRGSSSEVPCSLPQR 267 (285)
T ss_dssp HHHHHHHHCCSEECCCBEEESGG
T ss_pred HHHHHHHhcccccCccccCCchH
Confidence 22345677778889998888864
No 319
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.94 E-value=2.2e-28 Score=270.48 Aligned_cols=222 Identities=19% Similarity=0.197 Sum_probs=148.9
Q ss_pred cccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccc
Q 047768 341 NCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQL 420 (1009)
Q Consensus 341 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 420 (1009)
.+++|++|+|++|++++..|..+..+ ..|++|+|++|++++..+ +..+++|++|+|++|++++.. ..++|++
T Consensus 32 ~~~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~--~~~l~~L~~L~Ls~n~l~~l~-----~~~~L~~ 103 (317)
T 3o53_A 32 SAWNVKELDLSGNPLSQISAADLAPF-TKLELLNLSSNVLYETLD--LESLSTLRTLDLNNNYVQELL-----VGPSIET 103 (317)
T ss_dssp TGGGCSEEECTTSCCCCCCHHHHTTC-TTCCEEECTTSCCEEEEE--ETTCTTCCEEECCSSEEEEEE-----ECTTCCE
T ss_pred cCCCCCEEECcCCccCcCCHHHhhCC-CcCCEEECCCCcCCcchh--hhhcCCCCEEECcCCcccccc-----CCCCcCE
Confidence 34455555555555555555555544 345555555555554333 555666666666666655322 2255666
Q ss_pred eecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCc
Q 047768 421 LHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNL 500 (1009)
Q Consensus 421 L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~ 500 (1009)
|++++|++++..+.. +++|++|++++|++++..|..+..+++|++ |++++|.
T Consensus 104 L~l~~n~l~~~~~~~---~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~-------------------------L~Ls~N~ 155 (317)
T 3o53_A 104 LHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQY-------------------------LDLKLNE 155 (317)
T ss_dssp EECCSSCCSEEEECC---CSSCEEEECCSSCCCSGGGBCTGGGSSEEE-------------------------EECTTSC
T ss_pred EECCCCccCCcCccc---cCCCCEEECCCCCCCCccchhhhccCCCCE-------------------------EECCCCC
Confidence 666666665443332 345556666666665554555555555544 5556666
Q ss_pred cCCCCCCCc-cCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccccccccc
Q 047768 501 LNGSLPLGV-GNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPK 579 (1009)
Q Consensus 501 l~~~~p~~~-~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 579 (1009)
+++..|..+ ..+++|++|++++|++++. |. ...+++|+.|+|++|++++ +|..+..+++|++|+|++|+|+ .+|.
T Consensus 156 l~~~~~~~~~~~l~~L~~L~L~~N~l~~~-~~-~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~L~~N~l~-~l~~ 231 (317)
T 3o53_A 156 IDTVNFAELAASSDTLEHLNLQYNFIYDV-KG-QVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLRNNKLV-LIEK 231 (317)
T ss_dssp CCEEEGGGGGGGTTTCCEEECTTSCCCEE-EC-CCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECTTSCCC-EECT
T ss_pred CCcccHHHHhhccCcCCEEECCCCcCccc-cc-ccccccCCEEECCCCcCCc-chhhhcccCcccEEECcCCccc-chhh
Confidence 555555555 4689999999999999954 43 3458999999999999995 4556999999999999999999 6888
Q ss_pred ccccccccCceecccccCc-ccCC
Q 047768 580 YLENLSFLQYLNLSYNHFE-GEVP 602 (1009)
Q Consensus 580 ~~~~l~~L~~L~ls~N~l~-g~~p 602 (1009)
.+..+++|++|++++|+++ +.+|
T Consensus 232 ~~~~l~~L~~L~l~~N~~~~~~~~ 255 (317)
T 3o53_A 232 ALRFSQNLEHFDLRGNGFHCGTLR 255 (317)
T ss_dssp TCCCCTTCCEEECTTCCCBHHHHH
T ss_pred HhhcCCCCCEEEccCCCccCcCHH
Confidence 9999999999999999999 4444
No 320
>4azs_A Methyltransferase WBDD; kinase; HET: AMP SAM; 2.15A {Escherichia coli} PDB: 4azt_A* 4azv_A* 4azw_A*
Probab=99.94 E-value=2.4e-28 Score=289.46 Aligned_cols=187 Identities=14% Similarity=0.036 Sum_probs=131.6
Q ss_pred cccccCCceEEEEEEecCCeEEEEEEeecccc----------cchHHHHHHHHHHHhc-CCCCcceEEeeeeccccCCCc
Q 047768 708 TIGRGSFGFVYKGVLHENGMLVAVKVINLEQK----------GGSKSFAAECEALRSI-RHRNLIKIVTICSSIDFKGVD 776 (1009)
Q Consensus 708 ~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~----------~~~~~~~~E~~~l~~l-~h~niv~l~~~~~~~~~~~~~ 776 (1009)
..+.|++|.+..++....|+.||||++..... ...++|.+|+++|+++ .|+||+++++++.+ ..
T Consensus 241 ~~~~~~~~~h~~~rr~~fg~~~~~K~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~~~~~~~i~~~~~~~ed-----~~ 315 (569)
T 4azs_A 241 QPYAGAGLAHKRSRRYFFGEDYVCKFFYYDMPHGILTAEESQRNKYELHNEIKFLTQPPAGFDAPAVLAHGEN-----AQ 315 (569)
T ss_dssp C-C--------CCEEEEECSSEEEEEEESSCSTTCSCHHHHHHHHHHHHHHHHHHHSCCTTCCCCCEEEEEEC-----SS
T ss_pred ccccCCcccccccccccccceeEEEEEecccccccchhhhhHHHHHHHHHHHHHHHhcCCCCCeeEEEEEEEE-----CC
Confidence 35667777777777666789999999964321 1235699999999999 79999999999644 47
Q ss_pred eEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEecc
Q 047768 777 FKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDF 856 (1009)
Q Consensus 777 ~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~Df 856 (1009)
..|+||||++|++|.+++..... ++.. .|+.||+.||+|+|++ |||||||||+|||++++|.+||+||
T Consensus 316 ~~yLVMEyv~G~~L~d~i~~~~~------l~~~---~I~~QIl~AL~ylH~~---GIIHRDIKPeNILL~~dg~vKL~DF 383 (569)
T 4azs_A 316 SGWLVMEKLPGRLLSDMLAAGEE------IDRE---KILGSLLRSLAALEKQ---GFWHDDVRPWNVMVDARQHARLIDF 383 (569)
T ss_dssp EEEEEEECCCSEEHHHHHHTTCC------CCHH---HHHHHHHHHHHHHHHT---TCEESCCCGGGEEECTTSCEEECCC
T ss_pred EEEEEEecCCCCcHHHHHHhCCC------CCHH---HHHHHHHHHHHHHHHC---CceeccCchHhEEECCCCCEEEeec
Confidence 89999999999999999987653 5554 4899999999999999 9999999999999999999999999
Q ss_pred ccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCC
Q 047768 857 GLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPT 920 (1009)
Q Consensus 857 Gla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~ 920 (1009)
|+|+...... ......+||++|||||++.+ .+..++|+||+|++.+++.++..|+
T Consensus 384 GlAr~~~~~~--------~~~~t~vGTp~YmAPE~l~g-~~~~~~d~~s~g~~~~~l~~~~~~~ 438 (569)
T 4azs_A 384 GSIVTTPQDC--------SWPTNLVQSFFVFVNELFAE-NKSWNGFWRSAPVHPFNLPQPWSNW 438 (569)
T ss_dssp TTEESCC-----------CCSHHHHHHHHHHHHHHC------------------CCCCTTHHHH
T ss_pred ccCeeCCCCC--------ccccCceechhhccHHHhCC-CCCCcccccccccchhhhccccchh
Confidence 9998665321 22345789999999999875 4677899999999998887765553
No 321
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.94 E-value=1.9e-27 Score=278.25 Aligned_cols=241 Identities=17% Similarity=0.182 Sum_probs=205.2
Q ss_pred cccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCc
Q 047768 307 INFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPP 386 (1009)
Q Consensus 307 ~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~ 386 (1009)
......++|+.|+|++|.+..... +.|..+++|++|+|++|.+++..| +..+ +.|++|+|++|.|++..+
T Consensus 28 ~l~~~~~~L~~L~Ls~n~l~~~~~------~~~~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~l~~- 97 (487)
T 3oja_A 28 SLRQSAWNVKELDLSGNPLSQISA------ADLAPFTKLELLNLSSNVLYETLD--LESL-STLRTLDLNNNYVQELLV- 97 (487)
T ss_dssp TTSTTGGGCCEEECCSSCCCCCCG------GGGTTCTTCCEEECTTSCCEEEEE--CTTC-TTCCEEECCSSEEEEEEE-
T ss_pred HhcccCCCccEEEeeCCcCCCCCH------HHHhCCCCCCEEEeeCCCCCCCcc--cccC-CCCCEEEecCCcCCCCCC-
Confidence 334455699999999999987553 568899999999999999997766 6666 689999999999996443
Q ss_pred cccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCC-CCCC
Q 047768 387 GIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLG-NCKN 465 (1009)
Q Consensus 387 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~ 465 (1009)
.++|+.|+|++|+|++..+.. +++|+.|+|++|.+++..|..++++++|++|+|++|.+++.+|..+. .+++
T Consensus 98 ----~~~L~~L~L~~N~l~~~~~~~---l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l~~ 170 (487)
T 3oja_A 98 ----GPSIETLHAANNNISRVSCSR---GQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASSDT 170 (487)
T ss_dssp ----CTTCCEEECCSSCCCCEEECC---CSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGTTT
T ss_pred ----CCCcCEEECcCCcCCCCCccc---cCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhCCc
Confidence 389999999999999776654 57899999999999999899999999999999999999998888776 6788
Q ss_pred ccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEec
Q 047768 466 LMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQ 545 (1009)
Q Consensus 466 L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~ 545 (1009)
|+.|++++|.++ +. | .+..+++|+.|+|++|.|++ +|+.+..+++|+.|+|+
T Consensus 171 L~~L~Ls~N~l~-------------------------~~-~-~~~~l~~L~~L~Ls~N~l~~-~~~~~~~l~~L~~L~Ls 222 (487)
T 3oja_A 171 LEHLNLQYNFIY-------------------------DV-K-GQVVFAKLKTLDLSSNKLAF-MGPEFQSAAGVTWISLR 222 (487)
T ss_dssp CCEEECTTSCCC-------------------------EE-E-CCCCCTTCCEEECCSSCCCE-ECGGGGGGTTCSEEECT
T ss_pred ccEEecCCCccc-------------------------cc-c-ccccCCCCCEEECCCCCCCC-CCHhHcCCCCccEEEec
Confidence 776555555554 32 2 23358899999999999996 55569999999999999
Q ss_pred CcccccccccccccccccceEcCCCcccc-cccccccccccccCceecc
Q 047768 546 GNSFSGTIPQSLSSLTSIKELDLSQNNFS-GQIPKYLENLSFLQYLNLS 593 (1009)
Q Consensus 546 ~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~-~~~p~~~~~l~~L~~L~ls 593 (1009)
+|+|++ +|..++.+++|+.|+|++|.++ +.+|..+..++.|+.++++
T Consensus 223 ~N~l~~-lp~~l~~l~~L~~L~l~~N~l~c~~~~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 223 NNKLVL-IEKALRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp TSCCCE-ECTTCCCCTTCCEEECTTCCBCHHHHHHHHTTCHHHHHHHHH
T ss_pred CCcCcc-cchhhccCCCCCEEEcCCCCCcCcchHHHHHhCCCCcEEecc
Confidence 999995 7888999999999999999998 7888999999999999987
No 322
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.93 E-value=8.6e-26 Score=244.56 Aligned_cols=228 Identities=20% Similarity=0.224 Sum_probs=186.6
Q ss_pred eEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccc
Q 047768 347 YLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHAN 426 (1009)
Q Consensus 347 ~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 426 (1009)
..+..+.+++ .+|..+ +..+++|++++|++++..+..|.++++|++|+|++|++++..+..|..+++|++|+|++|
T Consensus 11 ~~~c~~~~l~-~ip~~l---~~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n 86 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNL---PFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGN 86 (276)
T ss_dssp EEECTTSCCS-SCCSSS---CTTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTC
T ss_pred eEEecCCCcc-ccCCCC---CCCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCC
Confidence 3455555555 344443 246888888888888777778888999999999999998777788888999999999999
Q ss_pred cccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCC-CC
Q 047768 427 FLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNG-SL 505 (1009)
Q Consensus 427 ~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~-~~ 505 (1009)
++++..+..|.++++|++|++++|++++..+..+.++++|++|++++| ++++ .+
T Consensus 87 ~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n-------------------------~l~~~~l 141 (276)
T 2z62_A 87 PIQSLALGAFSGLSSLQKLVAVETNLASLENFPIGHLKTLKELNVAHN-------------------------LIQSFKL 141 (276)
T ss_dssp CCCEECTTTTTTCTTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSS-------------------------CCCCCCC
T ss_pred ccCccChhhhcCCccccEEECCCCCccccCchhcccCCCCCEEECcCC-------------------------ccceecC
Confidence 998877788888999999999999988776667888888776555544 4443 35
Q ss_pred CCCccCCCCCCeeeccccccCCCccccccCCCCcc----EEEecCcccccccccccccccccceEcCCCccccccccccc
Q 047768 506 PLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLE----YVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYL 581 (1009)
Q Consensus 506 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~----~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~ 581 (1009)
|..++++++|++|++++|++++..+..+..+++|+ .|++++|++++..+..+.. .+|++|+|++|++++..+..|
T Consensus 142 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~~-~~L~~L~L~~n~l~~~~~~~~ 220 (276)
T 2z62_A 142 PEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKE-IRLKELALDTNQLKSVPDGIF 220 (276)
T ss_dssp CGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSCS-CCEEEEECCSSCCSCCCTTTT
T ss_pred chhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccCC-CcccEEECCCCceeecCHhHh
Confidence 77888999999999999999988788888888887 9999999999766665554 589999999999997777778
Q ss_pred ccccccCceecccccCcccCCCC
Q 047768 582 ENLSFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 582 ~~l~~L~~L~ls~N~l~g~~p~~ 604 (1009)
..+++|++|++++|+++|.+|..
T Consensus 221 ~~l~~L~~L~l~~N~~~c~c~~l 243 (276)
T 2z62_A 221 DRLTSLQKIWLHTNPWDCSCPRI 243 (276)
T ss_dssp TTCCSCCEEECCSSCBCCCTTTT
T ss_pred cccccccEEEccCCcccccCCch
Confidence 99999999999999999999864
No 323
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.93 E-value=1.1e-25 Score=242.62 Aligned_cols=217 Identities=20% Similarity=0.294 Sum_probs=128.6
Q ss_pred CCCCCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCC
Q 047768 55 NLCQHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRI 134 (1009)
Q Consensus 55 ~~c~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~ 134 (1009)
+.| .|.|+.|.-. ..++.+++++++++. +|..+. ++|++|+|++|++++..+..|+++++|++|+|++|.+++..
T Consensus 3 ~~C-~~~~~~C~c~-~~~~~l~~~~~~l~~-ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~ 77 (270)
T 2o6q_A 3 ALC-KKDGGVCSCN-NNKNSVDCSSKKLTA-IPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLP 77 (270)
T ss_dssp CCB-GGGTCSBEEE-TTTTEEECTTSCCSS-CCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCC
T ss_pred ccC-CCCCCCCEeC-CCCCEEEccCCCCCc-cCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeC
Confidence 345 8999998632 234567777777764 444443 56777888888777555567777777777777777777544
Q ss_pred CCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCccccc
Q 047768 135 PTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQ 214 (1009)
Q Consensus 135 p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~ 214 (1009)
+..|.++++|++|++++|.+. +..+..|.++++|++|+|++|++++..+..|..
T Consensus 78 ~~~~~~l~~L~~L~l~~n~l~--------------------------~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~ 131 (270)
T 2o6q_A 78 AGIFKELKNLETLWVTDNKLQ--------------------------ALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDS 131 (270)
T ss_dssp TTTTSSCTTCCEEECCSSCCC--------------------------CCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTT
T ss_pred hhhhcCCCCCCEEECCCCcCC--------------------------cCCHhHcccccCCCEEECCCCccCeeCHHHhCc
Confidence 445566666666666665554 333334445555555555555555444445555
Q ss_pred ccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccc
Q 047768 215 LTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVL 294 (1009)
Q Consensus 215 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 294 (1009)
+++|++|+|++|++++..+..|..+++|++|+|++|+++ .+|...+.++++|++|+|++|++++..+..|..+++|++|
T Consensus 132 l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L 210 (270)
T 2o6q_A 132 LTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLK-RVPEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKML 210 (270)
T ss_dssp CTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCS-CCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEE
T ss_pred CcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCc-EeChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEE
Confidence 555555555555555333333444444444444444444 4444444556666666666666665555566666666666
Q ss_pred ccccccccc
Q 047768 295 HLAENQFRG 303 (1009)
Q Consensus 295 ~Ls~N~l~~ 303 (1009)
+|++|.+..
T Consensus 211 ~l~~N~~~c 219 (270)
T 2o6q_A 211 QLQENPWDC 219 (270)
T ss_dssp ECCSSCBCC
T ss_pred EecCCCeeC
Confidence 666666543
No 324
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=5.4e-30 Score=310.14 Aligned_cols=461 Identities=15% Similarity=0.154 Sum_probs=231.5
Q ss_pred CCCCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCc---cCCcc------------ccCcccc
Q 047768 56 LCQHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHG---EIPDR------------IGNLFRL 120 (1009)
Q Consensus 56 ~c~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~---~~p~~------------~~~l~~L 120 (1009)
.|+.|.++... ....+++.+.... .....+..+++|++|+|+++.... ..|.. ...+++|
T Consensus 33 vck~W~~~~~~----~~~~l~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~~l~~l~~~~~~L 107 (594)
T 2p1m_B 33 VCKSWYEIERW----CRRKVFIGNCYAV-SPATVIRRFPKVRSVELKGKPHFADFNLVPDGWGGYVYPWIEAMSSSYTWL 107 (594)
T ss_dssp SCHHHHHHHHH----HCCEEEESSTTSS-CHHHHHHHCTTCCEEEEECSCGGGGGTCSCTTSCCBCHHHHHHHHHHCTTC
T ss_pred HHHHHHHhhhh----hceEEeecccccc-CHHHHHhhCCCceEEeccCCCchhhcccccccccchhhHHHHHHHHhCCCC
Confidence 46678888321 2234555443211 112335677889999999875321 22322 2456788
Q ss_pred ccccccccccCCCCCCCCc-CCCcCcEEecccc-cccCCCchHHhhhccCCcCeEeecCccCCCCCCcccC----Ccccc
Q 047768 121 ETLVLANNSFSGRIPTNLS-HCSKLITFSAHRN-NLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIG----NLSAL 194 (1009)
Q Consensus 121 ~~L~Ls~N~l~~~~p~~l~-~l~~L~~L~l~~n-~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~----~l~~L 194 (1009)
++|+|++|.+++..+..+. .+++|++|++++| .++......+ ...+++|++|+|++|.+++..+..+. .+++|
T Consensus 108 ~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~-~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L 186 (594)
T 2p1m_B 108 EEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFSTDGLAAI-AATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSL 186 (594)
T ss_dssp CEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEEHHHHHHH-HHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCC
T ss_pred CeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHH-HHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcC
Confidence 8888888888776666665 6788888888887 4432212222 14577888888888877655444333 55678
Q ss_pred ceeecccCc--ccC-CCCcccccccccccccccCc-cCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCCCcccce
Q 047768 195 RVIDIRTNR--LWG-KIPITLSQLTSLAYLHVGDN-HFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNF 270 (1009)
Q Consensus 195 ~~L~L~~N~--l~~-~~p~~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L 270 (1009)
++|++++|. +.. .++..+..+++|++|+|++| .++ .+|..+..+++|++|+++.+...
T Consensus 187 ~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~-~l~~~~~~~~~L~~L~l~~~~~~----------------- 248 (594)
T 2p1m_B 187 VSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLE-KLATLLQRAPQLEELGTGGYTAE----------------- 248 (594)
T ss_dssp CEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHH-HHHHHHHHCTTCSEEECSBCCCC-----------------
T ss_pred cEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHH-HHHHHHhcCCcceEcccccccCc-----------------
Confidence 888888776 210 11112234577777777776 333 24444555555555554333210
Q ss_pred eccccccCCCCCCCcCcccccccc-cccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEE
Q 047768 271 VIYTNNFTGSLPDSFSNASNLEVL-HLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLY 349 (1009)
Q Consensus 271 ~L~~N~l~~~~p~~~~~l~~L~~L-~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~ 349 (1009)
+..|.+.+ ++..+.++++|+.| .+.+.... ..+..+..+++|+.|++++|.+.. ..+...+..+++|+.|+
T Consensus 249 -~~~~~~~~-l~~~l~~~~~L~~Ls~~~~~~~~-~l~~~~~~~~~L~~L~L~~~~l~~-----~~l~~~~~~~~~L~~L~ 320 (594)
T 2p1m_B 249 -VRPDVYSG-LSVALSGCKELRCLSGFWDAVPA-YLPAVYSVCSRLTTLNLSYATVQS-----YDLVKLLCQCPKLQRLW 320 (594)
T ss_dssp -CCHHHHHH-HHHHHHTCTTCCEEECCBTCCGG-GGGGGHHHHTTCCEEECTTCCCCH-----HHHHHHHTTCTTCCEEE
T ss_pred -cchhhHHH-HHHHHhcCCCcccccCCcccchh-hHHHHHHhhCCCCEEEccCCCCCH-----HHHHHHHhcCCCcCEEe
Confidence 11222222 12234444555554 22222111 111122233344444444443221 01122234455555555
Q ss_pred ccCCCCCCcCchhhhhhcccceEEEcC---------CCccccCCCcccc-CcCccCEEEccCCCCCCCCCCCcCCccccc
Q 047768 350 LADNGFGGVLPHSIANLSTALIDFNLG---------KNQIYGTIPPGIA-NLVNLNSLRMEANRLTGTIPHVIGELKNLQ 419 (1009)
Q Consensus 350 L~~N~l~~~~p~~~~~l~~~L~~L~L~---------~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 419 (1009)
+++| ++......+....++|+.|++. .+.+++.....+. ++++|+.|.++.|.+++..+..+.
T Consensus 321 l~~~-~~~~~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~------ 393 (594)
T 2p1m_B 321 VLDY-IEDAGLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIA------ 393 (594)
T ss_dssp EEGG-GHHHHHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHH------
T ss_pred CcCc-cCHHHHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHH------
Confidence 5555 3211111111111334444431 1222211111111 234444444444444433222222
Q ss_pred ceecccccccCCCCccccccccccccccc--C----cccccc-----cCCCCCCCCCccccccCCCCccCCCchhhhhhc
Q 047768 420 LLHLHANFLQGTIPSSLGNLTLLTYLSFG--A----NNLQGN-----IPFSLGNCKNLMFFFAPRNKLTGALPQQILEIT 488 (1009)
Q Consensus 420 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~--~----N~l~~~-----~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~ 488 (1009)
..+++|++|+++ + |++++. ++..+..+++|+.|++++ .++
T Consensus 394 -----------------~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~~~l~~~~~~L~~L~L~~-~l~----------- 444 (594)
T 2p1m_B 394 -----------------RNRPNMTRFRLCIIEPKAPDYLTLEPLDIGFGAIVEHCKDLRRLSLSG-LLT----------- 444 (594)
T ss_dssp -----------------HHCTTCCEEEEEESSTTCCCTTTCCCTHHHHHHHHHHCTTCCEEECCS-SCC-----------
T ss_pred -----------------hhCCCcceeEeecccCCCcccccCCchhhHHHHHHhhCCCccEEeecC-ccc-----------
Confidence 123444444444 2 223210 111123344444444433 222
Q ss_pred cceeeEecCCCccCCCCCCCccC-CCCCCeeeccccccCCCccccc-cCCCCccEEEecCccccccccc-ccccccccce
Q 047768 489 TLSLSLDLSDNLLNGSLPLGVGN-LKSLVRLGIARNQFSGQIPVTL-GACTSLEYVELQGNSFSGTIPQ-SLSSLTSIKE 565 (1009)
Q Consensus 489 ~~~~~L~Ls~N~l~~~~p~~~~~-l~~L~~L~ls~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~ 565 (1009)
+..+..++. +++|++|+|++|.+++..+..+ ..+++|+.|+|++|++++..+. .+..+++|++
T Consensus 445 --------------~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~ 510 (594)
T 2p1m_B 445 --------------DKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRS 510 (594)
T ss_dssp --------------HHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSE
T ss_pred --------------HHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCE
Confidence 111122222 6778889999988876655555 6688999999999998765544 3456889999
Q ss_pred EcCCCccccccccccc-ccccccCceecccccCc
Q 047768 566 LDLSQNNFSGQIPKYL-ENLSFLQYLNLSYNHFE 598 (1009)
Q Consensus 566 L~Ls~N~l~~~~p~~~-~~l~~L~~L~ls~N~l~ 598 (1009)
|++++|+++..-...+ ..+++|+...+..+.-.
T Consensus 511 L~l~~~~~~~~~~~~l~~~lp~l~i~~~~~~~~~ 544 (594)
T 2p1m_B 511 LWMSSCSVSFGACKLLGQKMPKLNVEVIDERGAP 544 (594)
T ss_dssp EEEESSCCBHHHHHHHHHHCTTEEEEEECSSSCG
T ss_pred EeeeCCCCCHHHHHHHHHhCCCCEEEEecCCCcc
Confidence 9999998864434444 45677766666666543
No 325
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.92 E-value=1.8e-24 Score=233.14 Aligned_cols=186 Identities=24% Similarity=0.241 Sum_probs=126.5
Q ss_pred ccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccC
Q 047768 393 NLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAP 472 (1009)
Q Consensus 393 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~ 472 (1009)
+|+.|+|++|++++..+..|.++++|++|+|++|+++...+..|.++++|++|++++|++++..+..+..+++|++
T Consensus 38 ~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~---- 113 (270)
T 2o6q_A 38 DTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTDNKLQALPIGVFDQLVNLAE---- 113 (270)
T ss_dssp TCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCSSCCCCCCTTTTTTCSSCCE----
T ss_pred CCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCCCcCCcCCHhHcccccCCCE----
Confidence 4555555555555444445555555555555555555444444455555555555555555444444555555544
Q ss_pred CCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccc
Q 047768 473 RNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGT 552 (1009)
Q Consensus 473 ~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 552 (1009)
|++++|++++..|..|+++++|++|+|++|++++..+..|..+++|+.|+|++|++++.
T Consensus 114 ---------------------L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~ 172 (270)
T 2o6q_A 114 ---------------------LRLDRNQLKSLPPRVFDSLTKLTYLSLGYNELQSLPKGVFDKLTSLKELRLYNNQLKRV 172 (270)
T ss_dssp ---------------------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCC
T ss_pred ---------------------EECCCCccCeeCHHHhCcCcCCCEEECCCCcCCccCHhHccCCcccceeEecCCcCcEe
Confidence 33333334434445567778888888888888876666788888999999999998877
Q ss_pred cccccccccccceEcCCCcccccccccccccccccCceecccccCcccCCC
Q 047768 553 IPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPT 603 (1009)
Q Consensus 553 ~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~ 603 (1009)
.+..|.++++|++|+|++|++++..+..|..+++|++|+|++|++.+.++.
T Consensus 173 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~~ 223 (270)
T 2o6q_A 173 PEGAFDKLTELKTLKLDNNQLKRVPEGAFDSLEKLKMLQLQENPWDCTCNG 223 (270)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCCSSSS
T ss_pred ChhHhccCCCcCEEECCCCcCCcCCHHHhccccCCCEEEecCCCeeCCCcc
Confidence 777788899999999999999876666788899999999999999887763
No 326
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.92 E-value=8.9e-29 Score=299.45 Aligned_cols=414 Identities=15% Similarity=0.141 Sum_probs=222.6
Q ss_pred cccCccccccccccccccCC---CCCCCCcCCCcCcEEecccccccCCCch--HHhhhccCCcCeEeecCccCCCCCCcc
Q 047768 113 RIGNLFRLETLVLANNSFSG---RIPTNLSHCSKLITFSAHRNNLVGEIPE--ELISRRLFNLQGLSVGDNQLTGQLPAS 187 (1009)
Q Consensus 113 ~~~~l~~L~~L~Ls~N~l~~---~~p~~l~~l~~L~~L~l~~n~l~~~~p~--~~~~~~l~~L~~L~L~~n~l~~~~p~~ 187 (1009)
.+.++++|++|+|+++.... ..|..++. .... ..+...+++|++|+|++|.+++..+..
T Consensus 61 ~~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~----------------~~~~~l~~l~~~~~~L~~L~L~~~~~~~~~~~~ 124 (594)
T 2p1m_B 61 VIRRFPKVRSVELKGKPHFADFNLVPDGWGG----------------YVYPWIEAMSSSYTWLEEIRLKRMVVTDDCLEL 124 (594)
T ss_dssp HHHHCTTCCEEEEECSCGGGGGTCSCTTSCC----------------BCHHHHHHHHHHCTTCCEEEEESCBCCHHHHHH
T ss_pred HHhhCCCceEEeccCCCchhhcccccccccc----------------hhhHHHHHHHHhCCCCCeEEeeCcEEcHHHHHH
Confidence 46678889999998875321 22222110 0000 001123344444444444444333333
Q ss_pred cC-CccccceeecccC-cccCC-CCcccccccccccccccCccCCCCCCCccc----CCChHHHHHhhCCccCCCCChh-
Q 047768 188 IG-NLSALRVIDIRTN-RLWGK-IPITLSQLTSLAYLHVGDNHFSGTIPPSVY----NISSLVEIYLYGNRFTGSLPIE- 259 (1009)
Q Consensus 188 ~~-~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~----~l~~L~~L~L~~N~l~~~ip~~- 259 (1009)
+. .+++|++|+|++| .++.. ++..+..+++|++|+|++|.+++..+..+. .+++|++|++++|. +.++..
T Consensus 125 l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~~~~L~~L~l~~~~--~~~~~~~ 202 (594)
T 2p1m_B 125 IAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDTYTSLVSLNISCLA--SEVSFSA 202 (594)
T ss_dssp HHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTTCCCCCEEECTTCC--SCCCHHH
T ss_pred HHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhcCCcCcEEEecccC--CcCCHHH
Confidence 32 3445555555544 22211 222233445555555555554433222222 22344444444443 122211
Q ss_pred ---hccCCCcccceecccc-ccCCCCCCCcCcccccccccccc-------cccccccccccccccccccccccccccCCC
Q 047768 260 ---IGKNLPNLRNFVIYTN-NFTGSLPDSFSNASNLEVLHLAE-------NQFRGQVSINFNGLKDLSMLGLATNFLGNG 328 (1009)
Q Consensus 260 ---~~~~l~~L~~L~L~~N-~l~~~~p~~~~~l~~L~~L~Ls~-------N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~ 328 (1009)
+..++++|++|++++| .+.+ +|..+..+++|++|+++. |.+.+..+ .+.++++|+.|.
T Consensus 203 l~~l~~~~~~L~~L~L~~~~~~~~-l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~-~l~~~~~L~~Ls--------- 271 (594)
T 2p1m_B 203 LERLVTRCPNLKSLKLNRAVPLEK-LATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV-ALSGCKELRCLS--------- 271 (594)
T ss_dssp HHHHHHHCTTCCEEECCTTSCHHH-HHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH-HHHTCTTCCEEE---------
T ss_pred HHHHHHhCCCCcEEecCCCCcHHH-HHHHHhcCCcceEcccccccCccchhhHHHHHH-HHhcCCCccccc---------
Confidence 1223566777777766 3333 555566666777776433 33333222 334444444441
Q ss_pred CCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCC-CccccCcCccCEEEccCCCCCCC
Q 047768 329 AANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTI-PPGIANLVNLNSLRMEANRLTGT 407 (1009)
Q Consensus 329 ~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~ 407 (1009)
.+.+... +.++..+..+ .+|+.|+|++|.+++.. +..+..+++|+.|++++| ++..
T Consensus 272 --------------------~~~~~~~-~~l~~~~~~~-~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~-~~~~ 328 (594)
T 2p1m_B 272 --------------------GFWDAVP-AYLPAVYSVC-SRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY-IEDA 328 (594)
T ss_dssp --------------------CCBTCCG-GGGGGGHHHH-TTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG-GHHH
T ss_pred --------------------CCcccch-hhHHHHHHhh-CCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc-cCHH
Confidence 2222111 1122222222 34555555555544221 112345667777777766 3311
Q ss_pred -CCCCcCCcccccceec---------ccccccCCCCcccc-cccccccccccCcccccccCCCCC-CCCCccccccC--C
Q 047768 408 -IPHVIGELKNLQLLHL---------HANFLQGTIPSSLG-NLTLLTYLSFGANNLQGNIPFSLG-NCKNLMFFFAP--R 473 (1009)
Q Consensus 408 -~p~~~~~l~~L~~L~L---------~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~l~l~--~ 473 (1009)
++.....+++|++|+| +.|.+++.....+. ++++|++|+++.|++++..+..+. .+++|+.|+++ +
T Consensus 329 ~l~~l~~~~~~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~ 408 (594)
T 2p1m_B 329 GLEVLASTCKDLRELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIE 408 (594)
T ss_dssp HHHHHHHHCTTCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESS
T ss_pred HHHHHHHhCCCCCEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeeccc
Confidence 1112224667777776 33455533222333 478899998888988876555554 47888887777 3
Q ss_pred ----CCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccC-CCCccEEEecCcc
Q 047768 474 ----NKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGA-CTSLEYVELQGNS 548 (1009)
Q Consensus 474 ----N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~-l~~L~~L~L~~N~ 548 (1009)
|.+++...+ ..++..+..+++|+.|++++ .+++..+..++. +++|+.|+|++|.
T Consensus 409 ~~~~~~l~~~~~~--------------------~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l~~~~~~L~~L~L~~~~ 467 (594)
T 2p1m_B 409 PKAPDYLTLEPLD--------------------IGFGAIVEHCKDLRRLSLSG-LLTDKVFEYIGTYAKKMEMLSVAFAG 467 (594)
T ss_dssp TTCCCTTTCCCTH--------------------HHHHHHHHHCTTCCEEECCS-SCCHHHHHHHHHHCTTCCEEEEESCC
T ss_pred CCCcccccCCchh--------------------hHHHHHHhhCCCccEEeecC-cccHHHHHHHHHhchhccEeeccCCC
Confidence 333311100 01111245678999999987 777666666766 8999999999999
Q ss_pred ccccccccc-ccccccceEcCCCccccccccc-ccccccccCceecccccCcc
Q 047768 549 FSGTIPQSL-SSLTSIKELDLSQNNFSGQIPK-YLENLSFLQYLNLSYNHFEG 599 (1009)
Q Consensus 549 l~~~~p~~~-~~l~~L~~L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~g 599 (1009)
+++..+..+ ..+++|++|+|++|.+++..+. ....+++|++|++++|+++.
T Consensus 468 i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~l~~~~~~~ 520 (594)
T 2p1m_B 468 DSDLGMHHVLSGCDSLRKLEIRDCPFGDKALLANASKLETMRSLWMSSCSVSF 520 (594)
T ss_dssp SSHHHHHHHHHHCTTCCEEEEESCSCCHHHHHHTGGGGGGSSEEEEESSCCBH
T ss_pred CcHHHHHHHHhcCCCcCEEECcCCCCcHHHHHHHHHhCCCCCEEeeeCCCCCH
Confidence 987766666 6789999999999999765544 44569999999999999853
No 327
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=2.4e-24 Score=232.38 Aligned_cols=184 Identities=26% Similarity=0.272 Sum_probs=129.4
Q ss_pred cccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCc
Q 047768 387 GIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNL 466 (1009)
Q Consensus 387 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 466 (1009)
.+..+++|++|+|++|++++. ..+..+++|++|+|++|.+++..+..|.++++|++|++++|++++..|..+..+++|
T Consensus 58 ~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 135 (272)
T 3rfs_A 58 GIQYLPNVRYLALGGNKLHDI--SALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNL 135 (272)
T ss_dssp TGGGCTTCCEEECTTSCCCCC--GGGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTC
T ss_pred ccccCCCCcEEECCCCCCCCc--hhhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCC
Confidence 355566666666666666642 355666666666666666665555556666666666666666665555556666665
Q ss_pred cccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecC
Q 047768 467 MFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQG 546 (1009)
Q Consensus 467 ~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~ 546 (1009)
++ |++++|++++..|..++.+++|++|++++|++++..+..++.+++|+.|+|++
T Consensus 136 ~~-------------------------L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~ 190 (272)
T 3rfs_A 136 TY-------------------------LNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQ 190 (272)
T ss_dssp CE-------------------------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred CE-------------------------EECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHHhcCCccCCEEECCC
Confidence 54 33444444434444567778888888888888877777778888888888888
Q ss_pred cccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcccCCCC
Q 047768 547 NSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 547 N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~ 604 (1009)
|++++..|..++.+++|++|+|++|.+.+. +++|+.|+++.|+++|.+|..
T Consensus 191 N~l~~~~~~~~~~l~~L~~L~l~~N~~~~~-------~~~l~~l~~~~n~~~g~ip~~ 241 (272)
T 3rfs_A 191 NQLKSVPDGVFDRLTSLQYIWLHDNPWDCT-------CPGIRYLSEWINKHSGVVRNS 241 (272)
T ss_dssp SCCSCCCTTTTTTCTTCCEEECCSSCBCCC-------TTTTHHHHHHHHHTGGGBBCT
T ss_pred CcCCccCHHHHhCCcCCCEEEccCCCcccc-------CcHHHHHHHHHHhCCCcccCc
Confidence 888887777788888888888888888754 446888888889999888864
No 328
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.91 E-value=1.9e-24 Score=233.22 Aligned_cols=230 Identities=24% Similarity=0.250 Sum_probs=183.6
Q ss_pred ccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCc
Q 047768 312 LKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANL 391 (1009)
Q Consensus 312 l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l 391 (1009)
+..+..+++..+.+.... .+..+++|+.|++++|.++.. ..+..+ +.|++|++++|.+++. ..+..+
T Consensus 18 ~~~l~~l~l~~~~~~~~~--------~~~~l~~L~~L~l~~~~i~~~--~~l~~l-~~L~~L~l~~n~l~~~--~~l~~l 84 (272)
T 3rfs_A 18 FAETIKANLKKKSVTDAV--------TQNELNSIDQIIANNSDIKSV--QGIQYL-PNVRYLALGGNKLHDI--SALKEL 84 (272)
T ss_dssp HHHHHHHHHTCSCTTSEE--------CHHHHTTCCEEECTTSCCCCC--TTGGGC-TTCCEEECTTSCCCCC--GGGTTC
T ss_pred HHHHHHHHhcCccccccc--------ccccccceeeeeeCCCCcccc--cccccC-CCCcEEECCCCCCCCc--hhhcCC
Confidence 445556666666655432 256778899999999988743 345555 6789999999998863 478889
Q ss_pred CccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCcccccc
Q 047768 392 VNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFA 471 (1009)
Q Consensus 392 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 471 (1009)
++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|++++|++++..|..+..+++|+.
T Consensus 85 ~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~--- 161 (272)
T 3rfs_A 85 TNLTYLILTGNQLQSLPNGVFDKLTNLKELVLVENQLQSLPDGVFDKLTNLTYLNLAHNQLQSLPKGVFDKLTNLTE--- 161 (272)
T ss_dssp TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCE---
T ss_pred CCCCEEECCCCccCccChhHhcCCcCCCEEECCCCcCCccCHHHhccCCCCCEEECCCCccCccCHHHhccCccCCE---
Confidence 99999999999999888888899999999999999999877777889999999999999998777777788887765
Q ss_pred CCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccc
Q 047768 472 PRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSG 551 (1009)
Q Consensus 472 ~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 551 (1009)
|++++|++++..+..++.+++|++|++++|++++..|..++.+++|+.|+|++|.+.+
T Consensus 162 ----------------------L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~~ 219 (272)
T 3rfs_A 162 ----------------------LDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGVFDRLTSLQYIWLHDNPWDC 219 (272)
T ss_dssp ----------------------EECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred ----------------------EECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHHHhCCcCCCEEEccCCCccc
Confidence 5555555555556667888999999999999998888888899999999999998875
Q ss_pred ccccccccccccceEcCCCcccccccccccccccc
Q 047768 552 TIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSF 586 (1009)
Q Consensus 552 ~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 586 (1009)
. +++|+.|+++.|.++|.+|..++.+..
T Consensus 220 ~-------~~~l~~l~~~~n~~~g~ip~~~~~~~~ 247 (272)
T 3rfs_A 220 T-------CPGIRYLSEWINKHSGVVRNSAGSVAP 247 (272)
T ss_dssp C-------TTTTHHHHHHHHHTGGGBBCTTSCBCG
T ss_pred c-------CcHHHHHHHHHHhCCCcccCcccccCC
Confidence 4 446888999999999999988877654
No 329
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.91 E-value=6.3e-24 Score=230.80 Aligned_cols=206 Identities=21% Similarity=0.243 Sum_probs=129.5
Q ss_pred cccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccc
Q 047768 339 LTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNL 418 (1009)
Q Consensus 339 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 418 (1009)
+.++++++.+++++|+++ .+|..+. ..++.|+|++|+|++..+..|.++++|+.|+|++|+|++..+.
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~---~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-------- 73 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP---KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-------- 73 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC---TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC--------
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC---CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC--------
Confidence 345566777777777766 2333222 2344555555555444444444444455555444444432221
Q ss_pred cceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCC
Q 047768 419 QLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSD 498 (1009)
Q Consensus 419 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~ 498 (1009)
..+++|++|++++|+|+ .+|..+..+++|++ |++++
T Consensus 74 ------------------~~l~~L~~L~Ls~N~l~-~l~~~~~~l~~L~~-------------------------L~l~~ 109 (290)
T 1p9a_G 74 ------------------GTLPVLGTLDLSHNQLQ-SLPLLGQTLPALTV-------------------------LDVSF 109 (290)
T ss_dssp ------------------SCCTTCCEEECCSSCCS-SCCCCTTTCTTCCE-------------------------EECCS
T ss_pred ------------------CCCCcCCEEECCCCcCC-cCchhhccCCCCCE-------------------------EECCC
Confidence 34444555555555554 34444444444443 44444
Q ss_pred CccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccc
Q 047768 499 NLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIP 578 (1009)
Q Consensus 499 N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 578 (1009)
|++++..|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..+..|..+++|+.|+|++|+|+ .+|
T Consensus 110 N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~-~ip 188 (290)
T 1p9a_G 110 NRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLY-TIP 188 (290)
T ss_dssp SCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCC-CCC
T ss_pred CcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCC-ccC
Confidence 4444444456777778888888888888766777788888888888888888666667788888888888888887 677
Q ss_pred cccccccccCceecccccCcccC
Q 047768 579 KYLENLSFLQYLNLSYNHFEGEV 601 (1009)
Q Consensus 579 ~~~~~l~~L~~L~ls~N~l~g~~ 601 (1009)
..+..+.+|++|+|++|++.+.+
T Consensus 189 ~~~~~~~~L~~l~L~~Np~~C~c 211 (290)
T 1p9a_G 189 KGFFGSHLLPFAFLHGNPWLCNC 211 (290)
T ss_dssp TTTTTTCCCSEEECCSCCBCCSG
T ss_pred hhhcccccCCeEEeCCCCccCcC
Confidence 77778888888888888887765
No 330
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.90 E-value=1.5e-23 Score=226.78 Aligned_cols=224 Identities=21% Similarity=0.208 Sum_probs=188.1
Q ss_pred EEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcc
Q 047768 372 DFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANN 451 (1009)
Q Consensus 372 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~ 451 (1009)
..+..+..++ .+|..+. ++|++|+|++|++++..+..|.++++|++|+|++|++++..+..|.++++|++|++++|+
T Consensus 11 ~~~c~~~~l~-~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~ 87 (276)
T 2z62_A 11 TYQCMELNFY-KIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNP 87 (276)
T ss_dssp EEECTTSCCS-SCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCC
T ss_pred eEEecCCCcc-ccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCc
Confidence 4566777776 5676664 589999999999998888899999999999999999998878889999999999999999
Q ss_pred cccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCC-cc
Q 047768 452 LQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQ-IP 530 (1009)
Q Consensus 452 l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~-~p 530 (1009)
+++..|..+.++++|++|++ ++|.+++..+..++++++|++|++++|++++. +|
T Consensus 88 l~~~~~~~~~~l~~L~~L~l-------------------------~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~ 142 (276)
T 2z62_A 88 IQSLALGAFSGLSSLQKLVA-------------------------VETNLASLENFPIGHLKTLKELNVAHNLIQSFKLP 142 (276)
T ss_dssp CCEECTTTTTTCTTCCEEEC-------------------------TTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCC
T ss_pred cCccChhhhcCCccccEEEC-------------------------CCCCccccCchhcccCCCCCEEECcCCccceecCc
Confidence 99888888999888876554 45555545555688999999999999999874 69
Q ss_pred ccccCCCCccEEEecCcccccccccccccccccc----eEcCCCcccccccccccccccccCceecccccCcccCCCC-C
Q 047768 531 VTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIK----ELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTK-G 605 (1009)
Q Consensus 531 ~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~----~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~-~ 605 (1009)
..++.+++|+.|+|++|++++..+..+..+++|+ .|++++|++++..+..+. ..+|++|+|++|++++..+.. .
T Consensus 143 ~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~l~l~L~ls~n~l~~~~~~~~~-~~~L~~L~L~~n~l~~~~~~~~~ 221 (276)
T 2z62_A 143 EYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFK-EIRLKELALDTNQLKSVPDGIFD 221 (276)
T ss_dssp GGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCEEEECCSSCCCEECTTSSC-SCCEEEEECCSSCCSCCCTTTTT
T ss_pred hhhccCCCCCEEECCCCCCCcCCHHHhhhhhhccccceeeecCCCcccccCccccC-CCcccEEECCCCceeecCHhHhc
Confidence 9999999999999999999988888999888888 899999999965555554 458999999999999766543 4
Q ss_pred cccCccccccccCCCcCCC
Q 047768 606 IFKNKTGFSIVGNGKLCGG 624 (1009)
Q Consensus 606 ~~~~~~~~~~~~n~~lc~~ 624 (1009)
.+.++....+.+|+..|+-
T Consensus 222 ~l~~L~~L~l~~N~~~c~c 240 (276)
T 2z62_A 222 RLTSLQKIWLHTNPWDCSC 240 (276)
T ss_dssp TCCSCCEEECCSSCBCCCT
T ss_pred ccccccEEEccCCcccccC
Confidence 5667777888999988864
No 331
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.90 E-value=2.8e-24 Score=233.56 Aligned_cols=204 Identities=23% Similarity=0.256 Sum_probs=151.0
Q ss_pred ccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCC
Q 047768 90 VGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFN 169 (1009)
Q Consensus 90 ~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~ 169 (1009)
++++++++++++++|+++ .+|..+. ++|++|+|++|.+++..|..|.++++|++|++++|.+++. +.. ..+++
T Consensus 6 ~~~l~~l~~l~~~~~~l~-~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~-~~~---~~l~~ 78 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLT-ALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKL-QVD---GTLPV 78 (290)
T ss_dssp EECSTTCCEEECTTSCCS-SCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEE-ECC---SCCTT
T ss_pred ccccCCccEEECCCCCCC-cCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcc-cCC---CCCCc
Confidence 556677777777777777 5665554 5677777777777766667777777777777777776642 221 35677
Q ss_pred cCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhC
Q 047768 170 LQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYG 249 (1009)
Q Consensus 170 L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 249 (1009)
|++|+|++|+++ .+|..+.++++|++|+|++|++++..+..|..+++|++|+|++|++++..+..|..+++|+.|+|++
T Consensus 79 L~~L~Ls~N~l~-~l~~~~~~l~~L~~L~l~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 157 (290)
T 1p9a_G 79 LGTLDLSHNQLQ-SLPLLGQTLPALTVLDVSFNRLTSLPLGALRGLGELQELYLKGNELKTLPPGLLTPTPKLEKLSLAN 157 (290)
T ss_dssp CCEEECCSSCCS-SCCCCTTTCTTCCEEECCSSCCCCCCSSTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CCEEECCCCcCC-cCchhhccCCCCCEEECCCCcCcccCHHHHcCCCCCCEEECCCCCCCccChhhcccccCCCEEECCC
Confidence 777777778777 6677778888888888888888877777888888888888888888866666677777888888888
Q ss_pred CccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccc
Q 047768 250 NRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRG 303 (1009)
Q Consensus 250 N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~ 303 (1009)
|+++ .+|..++..+++|++|+|++|+++ .+|..+..+.+|+.|+|++|.+..
T Consensus 158 N~l~-~l~~~~~~~l~~L~~L~L~~N~l~-~ip~~~~~~~~L~~l~L~~Np~~C 209 (290)
T 1p9a_G 158 NNLT-ELPAGLLNGLENLDTLLLQENSLY-TIPKGFFGSHLLPFAFLHGNPWLC 209 (290)
T ss_dssp SCCS-CCCTTTTTTCTTCCEEECCSSCCC-CCCTTTTTTCCCSEEECCSCCBCC
T ss_pred CcCC-ccCHHHhcCcCCCCEEECCCCcCC-ccChhhcccccCCeEEeCCCCccC
Confidence 8887 777777777888888888888887 456666666778888888887653
No 332
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.90 E-value=4.2e-24 Score=235.27 Aligned_cols=228 Identities=17% Similarity=0.190 Sum_probs=168.5
Q ss_pred ccceEEccCCCCCCcCchhh---hhhcccceEEEcCCCccccCCCccc--cCcCccCEEEccCCCCCCCCC----CCcCC
Q 047768 344 KLQYLYLADNGFGGVLPHSI---ANLSTALIDFNLGKNQIYGTIPPGI--ANLVNLNSLRMEANRLTGTIP----HVIGE 414 (1009)
Q Consensus 344 ~L~~L~L~~N~l~~~~p~~~---~~l~~~L~~L~L~~N~l~~~~p~~~--~~l~~L~~L~L~~N~l~~~~p----~~~~~ 414 (1009)
.++.+.+.++.++...-..+ ... ..|++|++++|.+++..|..+ ..+++|+.|+|++|++++..+ ..+..
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAY-SRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHH-SCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhccc-CceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 46677777776653211111 112 358888888888888888887 888889999999998887655 34457
Q ss_pred cccccceecccccccCCCCcccccccccccccccCcccccc--c--CCCCCCCCCccccccCCCCccCCCchhhhhhccc
Q 047768 415 LKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGN--I--PFSLGNCKNLMFFFAPRNKLTGALPQQILEITTL 490 (1009)
Q Consensus 415 l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~--~--p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~ 490 (1009)
+++|++|+|++|++++..|..|+++++|++|+|++|++.+. + +..+..+++|++|++++|+++ .+|.....
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~~~---- 218 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGME-TPTGVCAA---- 218 (310)
T ss_dssp CSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCC-CHHHHHHH----
T ss_pred ccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCC-chHHHHHH----
Confidence 88888999999988888788888888899999999887652 2 233467888888777777775 22221100
Q ss_pred eeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCC---CCccEEEecCcccccccccccccccccceEc
Q 047768 491 SLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGAC---TSLEYVELQGNSFSGTIPQSLSSLTSIKELD 567 (1009)
Q Consensus 491 ~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 567 (1009)
.++++++|++|||++|++++.+|..+..+ ++|++|+|++|+|+ .+|..+. ++|++||
T Consensus 219 -----------------l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L~ 278 (310)
T 4glp_A 219 -----------------LAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVLD 278 (310)
T ss_dssp -----------------HHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCEE
T ss_pred -----------------HHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEEE
Confidence 13566788888888888888778777776 58999999999988 6677765 7899999
Q ss_pred CCCcccccccccccccccccCceecccccCcc
Q 047768 568 LSQNNFSGQIPKYLENLSFLQYLNLSYNHFEG 599 (1009)
Q Consensus 568 Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g 599 (1009)
|++|+|++. |. +..+++|++|+|++|+++.
T Consensus 279 Ls~N~l~~~-~~-~~~l~~L~~L~L~~N~l~~ 308 (310)
T 4glp_A 279 LSSNRLNRA-PQ-PDELPEVDNLTLDGNPFLV 308 (310)
T ss_dssp CCSCCCCSC-CC-TTSCCCCSCEECSSTTTSC
T ss_pred CCCCcCCCC-ch-hhhCCCccEEECcCCCCCC
Confidence 999999864 43 6788899999999998864
No 333
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.89 E-value=5.1e-24 Score=225.21 Aligned_cols=197 Identities=14% Similarity=0.164 Sum_probs=153.7
Q ss_pred CCCeeeecCCcCCccCCccccCccccccccccccc-cCCCCCCCCcCCCcCcEEeccc-ccccCCCchHHhhhccCCcCe
Q 047768 95 FLRYINIADNDFHGEIPDRIGNLFRLETLVLANNS-FSGRIPTNLSHCSKLITFSAHR-NNLVGEIPEELISRRLFNLQG 172 (1009)
Q Consensus 95 ~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~-l~~~~p~~l~~l~~L~~L~l~~-n~l~~~~p~~~~~~~l~~L~~ 172 (1009)
+|++|+|++|++++..+..|+++++|++|+|++|. +++..+..|+++++|++|++++ |++++..+..+ ..+++|++
T Consensus 32 ~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f--~~l~~L~~ 109 (239)
T 2xwt_C 32 STQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDAL--KELPLLKF 109 (239)
T ss_dssp TCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSE--ECCTTCCE
T ss_pred cccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHh--CCCCCCCE
Confidence 77888888888886666678888888888888886 7766666788888888888887 77764333333 46778888
Q ss_pred EeecCccCCCCCCcccCCccccc---eeecccC-cccCCCCcccccccccc-cccccCccCCCCCCCcccCCChHHHHHh
Q 047768 173 LSVGDNQLTGQLPASIGNLSALR---VIDIRTN-RLWGKIPITLSQLTSLA-YLHVGDNHFSGTIPPSVYNISSLVEIYL 247 (1009)
Q Consensus 173 L~L~~n~l~~~~p~~~~~l~~L~---~L~L~~N-~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L 247 (1009)
|++++|++++ +|. |+.+++|+ +|++++| ++.+..+..|..+++|+ +|++++|+++ .+|......++|++|+|
T Consensus 110 L~l~~n~l~~-lp~-~~~l~~L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~~~~~~L~~L~L 186 (239)
T 2xwt_C 110 LGIFNTGLKM-FPD-LTKVYSTDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYAFNGTKLDAVYL 186 (239)
T ss_dssp EEEEEECCCS-CCC-CTTCCBCCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTTTTTCEEEEEEC
T ss_pred EeCCCCCCcc-ccc-cccccccccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhhcCCCCCCEEEc
Confidence 8888888885 565 77888887 9999999 88877777888899999 9999999988 55655444488999999
Q ss_pred hCCc-cCCCCChhhccCC-CcccceeccccccCCCCCCCcCcccccccccccccc
Q 047768 248 YGNR-FTGSLPIEIGKNL-PNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQ 300 (1009)
Q Consensus 248 ~~N~-l~~~ip~~~~~~l-~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 300 (1009)
++|+ ++ .+|...+.++ ++|+.|++++|++++..+. .+++|+.|+++++.
T Consensus 187 ~~n~~l~-~i~~~~~~~l~~~L~~L~l~~N~l~~l~~~---~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 187 NKNKYLT-VIDKDAFGGVYSGPSLLDVSQTSVTALPSK---GLEHLKELIARNTW 237 (239)
T ss_dssp TTCTTCC-EECTTTTTTCSBCCSEEECTTCCCCCCCCT---TCTTCSEEECTTC-
T ss_pred CCCCCcc-cCCHHHhhccccCCcEEECCCCccccCChh---HhccCceeeccCcc
Confidence 9995 88 7888888888 9999999999999866554 56678888887763
No 334
>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*
Probab=99.89 E-value=3.4e-24 Score=252.58 Aligned_cols=191 Identities=18% Similarity=0.151 Sum_probs=142.5
Q ss_pred ccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--------chHHHHHHHHHHHhcCCCCcceEEeeeeccccCCC
Q 047768 704 SSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--------GSKSFAAECEALRSIRHRNLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 704 ~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------~~~~~~~E~~~l~~l~h~niv~l~~~~~~~~~~~~ 775 (1009)
...+.||+|+||+||+|.. .++.+|+|+....... ..+.+.+|++++++++||||+++..++...
T Consensus 339 ~~~~~LG~G~fg~Vy~~~~--~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~E~~il~~l~h~nIv~~~~~~~~~----- 411 (540)
T 3en9_A 339 IPEHLIGKGAEADIKRDSY--LDFDVIIKERVKKGYRDERLDENIRKSRTAREARYLALVKDFGIPAPYIFDVDL----- 411 (540)
T ss_dssp ---------CCEEEEEEEC--SSCEEEEEEECCCTTSCHHHHHHHHHHHHHHHHHHHHHGGGGTCCCCCEEEEET-----
T ss_pred CCCCEEeeCCCEEEEEEEE--CCCeEEEEEEecccccchhhhhHHHHHHHHHHHHHHHhcCCCCcCceEEEEEeC-----
Confidence 4467899999999999954 5788999987432211 124578999999999999999544443322
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEec
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSD 855 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~D 855 (1009)
...++||||+++++|.++++. +..++.|+++||.|||++ +|+||||||+|||++. .+||+|
T Consensus 412 ~~~~lVmE~~~ggsL~~~l~~--------------~~~i~~qi~~aL~~LH~~---gIiHrDiKp~NILl~~--~~kL~D 472 (540)
T 3en9_A 412 DNKRIMMSYINGKLAKDVIED--------------NLDIAYKIGEIVGKLHKN---DVIHNDLTTSNFIFDK--DLYIID 472 (540)
T ss_dssp TTTEEEEECCCSEEHHHHSTT--------------CTHHHHHHHHHHHHHHHT---TEECTTCCTTSEEESS--SEEECC
T ss_pred CccEEEEECCCCCCHHHHHHH--------------HHHHHHHHHHHHHHHHHC---cCccCCCCHHHEEECC--eEEEEE
Confidence 445999999999999999875 347999999999999999 9999999999999999 999999
Q ss_pred cccccccCCCCCCCccccCCccccccccccccCccccCC--CCCCCcccchHHHHHHHHHHhCCCCCc
Q 047768 856 FGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG--GEASMRGGVYSYGILLLEIFTRRRPTE 921 (1009)
Q Consensus 856 fGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~--~~~~~~~DvwS~Gvvl~elltg~~p~~ 921 (1009)
||+++......... .+.........||+.|||||++.. ..|+..+|+||..+-..+-+.++.+|.
T Consensus 473 FGla~~~~~~~~~~-~~~~~~~~~~~GT~~y~APEv~~~~~~~Y~~~~d~ws~vl~~l~~v~~r~rY~ 539 (540)
T 3en9_A 473 FGLGKISNLDEDKA-VDLIVFKKAVLSTHHEKFDEIWERFLEGYKSVYDRWEIILELMKDVERRARYV 539 (540)
T ss_dssp CTTCEECCCHHHHH-HHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHCTTHHHHHHHHHHHHTCSCCC
T ss_pred CccCEECCCccccc-cchhhhhhhhcCCCCcCCHHHHHHHHHHHHHHHhHHHHHHHHHHHHHhccccC
Confidence 99999765321000 000001235679999999999887 667888999999999999888877763
No 335
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.89 E-value=6.1e-26 Score=255.80 Aligned_cols=269 Identities=14% Similarity=0.144 Sum_probs=167.9
Q ss_pred EEeecCCcccccCccccCCCCCCeeeecCCcCCccCC----ccccCcc-ccccccccccccCCCCCCCCcCC-----CcC
Q 047768 75 LDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIP----DRIGNLF-RLETLVLANNSFSGRIPTNLSHC-----SKL 144 (1009)
Q Consensus 75 l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p----~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l-----~~L 144 (1009)
++|+.++++|.+|..+...++|++|||++|.+++..+ ..|.+++ +|++|+|++|.+++..+..++.+ ++|
T Consensus 3 ~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L 82 (362)
T 3goz_A 3 YKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANV 82 (362)
T ss_dssp EECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTC
T ss_pred cccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCc
Confidence 5677888888888777777778888888888886655 6777787 88888888888887777777665 888
Q ss_pred cEEecccccccCCCchHHhh--hcc-CCcCeEeecCccCCCCCCcccC----C-ccccceeecccCcccCCCC----ccc
Q 047768 145 ITFSAHRNNLVGEIPEELIS--RRL-FNLQGLSVGDNQLTGQLPASIG----N-LSALRVIDIRTNRLWGKIP----ITL 212 (1009)
Q Consensus 145 ~~L~l~~n~l~~~~p~~~~~--~~l-~~L~~L~L~~n~l~~~~p~~~~----~-l~~L~~L~L~~N~l~~~~p----~~~ 212 (1009)
++|++++|.+++..+..+.. ..+ .+|++|+|++|++++..+..+. . .++|++|+|++|++....+ ..+
T Consensus 83 ~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l 162 (362)
T 3goz_A 83 TSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQIL 162 (362)
T ss_dssp CEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHH
T ss_pred cEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHH
Confidence 88888888887766665532 122 6788888888888766554433 3 2578888888888764333 333
Q ss_pred cccc-ccccccccCccCCCCCCCccc----CC-ChHHHHHhhCCccCCC----CChhhccCCCcccceeccccccCCCCC
Q 047768 213 SQLT-SLAYLHVGDNHFSGTIPPSVY----NI-SSLVEIYLYGNRFTGS----LPIEIGKNLPNLRNFVIYTNNFTGSLP 282 (1009)
Q Consensus 213 ~~l~-~L~~L~L~~N~l~~~~p~~~~----~l-~~L~~L~L~~N~l~~~----ip~~~~~~l~~L~~L~L~~N~l~~~~p 282 (1009)
..++ +|++|+|++|++++..+..+. .+ ++|++|+|++|++++. ++..+....++|++|+|++|.+++..+
T Consensus 163 ~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~ 242 (362)
T 3goz_A 163 AAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSL 242 (362)
T ss_dssp HTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCH
T ss_pred hcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHH
Confidence 4444 788888888877755544333 22 3566666666655521 222222222345555555555544322
Q ss_pred ----CCcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCCCCCCc
Q 047768 283 ----DSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGV 358 (1009)
Q Consensus 283 ----~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~ 358 (1009)
..+..+++|++|+|++|.+..+.+..+ ..+...+..+++|+.||+++|.+...
T Consensus 243 ~~l~~~~~~l~~L~~L~L~~n~l~~i~~~~~-----------------------~~l~~~~~~l~~L~~LdL~~N~l~~~ 299 (362)
T 3goz_A 243 ENLKLLKDSLKHLQTVYLDYDIVKNMSKEQC-----------------------KALGAAFPNIQKIILVDKNGKEIHPS 299 (362)
T ss_dssp HHHHHTTTTTTTCSEEEEEHHHHTTCCHHHH-----------------------HHHHTTSTTCCEEEEECTTSCBCCGG
T ss_pred HHHHHHHhcCCCccEEEeccCCccccCHHHH-----------------------HHHHHHhccCCceEEEecCCCcCCCc
Confidence 223334444444444444333222111 11223466777888888888888766
Q ss_pred Cchhhhhh
Q 047768 359 LPHSIANL 366 (1009)
Q Consensus 359 ~p~~~~~l 366 (1009)
.+..+.+.
T Consensus 300 ~~~~~~~~ 307 (362)
T 3goz_A 300 HSIPISNL 307 (362)
T ss_dssp GCHHHHHH
T ss_pred chHHHHHH
Confidence 55555444
No 336
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.89 E-value=1.3e-23 Score=223.64 Aligned_cols=189 Identities=21% Similarity=0.278 Sum_probs=129.6
Q ss_pred CCCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCC
Q 047768 57 CQHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPT 136 (1009)
Q Consensus 57 c~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~ 136 (1009)
|+.|+|.+|... .+.+++++++++. +|..+. ++|++|+|++|++++..|..|+++++|++|+|++|.+++..|.
T Consensus 4 Cp~~~gC~C~~~---~~~l~~~~~~l~~-~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~ 77 (251)
T 3m19_A 4 CETVTGCTCNEG---KKEVDCQGKSLDS-VPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAG 77 (251)
T ss_dssp CHHHHSSEEEGG---GTEEECTTCCCSS-CCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTT
T ss_pred CCCCCceEcCCC---CeEEecCCCCccc-cCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHh
Confidence 558999999532 3457888888874 444444 6889999999999988888899999999999999999888888
Q ss_pred CCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCccccccc
Q 047768 137 NLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLT 216 (1009)
Q Consensus 137 ~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 216 (1009)
.|.++++|++|++++|++++..+..+ ..+.+|++|+|++|++++..+..|+++++|++|+|++|+|++..+..|..++
T Consensus 78 ~~~~l~~L~~L~L~~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 155 (251)
T 3m19_A 78 VFDDLTELGTLGLANNQLASLPLGVF--DHLTQLDKLYLGGNQLKSLPSGVFDRLTKLKELRLNTNQLQSIPAGAFDKLT 155 (251)
T ss_dssp TTTTCTTCCEEECTTSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred HhccCCcCCEEECCCCcccccChhHh--cccCCCCEEEcCCCcCCCcChhHhccCCcccEEECcCCcCCccCHHHcCcCc
Confidence 88888888888888877764333333 4456666666666666655555566666666666666666655555666666
Q ss_pred ccccccccCccCCCCCCCcccCCChHHHHHhhCCccC
Q 047768 217 SLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFT 253 (1009)
Q Consensus 217 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 253 (1009)
+|++|+|++|++++..+..|..+++|++|+|++|.++
T Consensus 156 ~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~ 192 (251)
T 3m19_A 156 NLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFD 192 (251)
T ss_dssp TCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBC
T ss_pred CCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCcee
Confidence 6666666666666444444555555555555555444
No 337
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.88 E-value=2.8e-23 Score=232.80 Aligned_cols=248 Identities=17% Similarity=0.124 Sum_probs=139.1
Q ss_pred CCCC-C-CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCcccccccccccccc
Q 047768 53 CVNL-C-QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSF 130 (1009)
Q Consensus 53 ~~~~-c-~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l 130 (1009)
|++. | |+|+.|.|++ ++++ .+|..+ .+++++|+|++|+|+...+..|.++++|++|||++|++
T Consensus 2 Cp~~~C~C~~~~v~C~~------------~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i 66 (350)
T 4ay9_X 2 CHHRICHCSNRVFLCQE------------SKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDV 66 (350)
T ss_dssp CCCSSSEEETTEEEEES------------TTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTT
T ss_pred CCCCccEeeCCEEEecC------------CCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCC
Confidence 6543 5 5677788854 3444 345444 35788999999999844445788899999999999988
Q ss_pred CCCCCC-CCcCCCcCcE-EecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCC
Q 047768 131 SGRIPT-NLSHCSKLIT-FSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKI 208 (1009)
Q Consensus 131 ~~~~p~-~l~~l~~L~~-L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 208 (1009)
.+.+|. .|.++++|.+ ++++.|+++ ...|..|.++++|++|++++|++.+..
T Consensus 67 ~~~i~~~~f~~L~~l~~~l~~~~N~l~--------------------------~l~~~~f~~l~~L~~L~l~~n~l~~~~ 120 (350)
T 4ay9_X 67 LEVIEADVFSNLPKLHEIRIEKANNLL--------------------------YINPEAFQNLPNLQYLLISNTGIKHLP 120 (350)
T ss_dssp CCEECTTSBCSCTTCCEEEEEEETTCC--------------------------EECTTSBCCCTTCCEEEEEEECCSSCC
T ss_pred CCccChhHhhcchhhhhhhcccCCccc--------------------------ccCchhhhhccccccccccccccccCC
Confidence 766654 5677777654 344444444 333444455555555555555554444
Q ss_pred CcccccccccccccccC-ccCCCCCCCcccCCC-hHHHHHhhCCccCCCCChhhccCCCcccceeccc-cccCCCCCCCc
Q 047768 209 PITLSQLTSLAYLHVGD-NHFSGTIPPSVYNIS-SLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYT-NNFTGSLPDSF 285 (1009)
Q Consensus 209 p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~-~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~-N~l~~~~p~~~ 285 (1009)
+..+....++..|++.+ |++....+..|..+. .++.|+|++|+|+ .||..+|. ..+|+.|++++ |.++.+.++.|
T Consensus 121 ~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N~i~-~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f 198 (350)
T 4ay9_X 121 DVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKNGIQ-EIHNSAFN-GTQLDELNLSDNNNLEELPNDVF 198 (350)
T ss_dssp CCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSSCCC-EECTTSST-TEEEEEEECTTCTTCCCCCTTTT
T ss_pred chhhcccchhhhhhhccccccccccccchhhcchhhhhhcccccccc-CCChhhcc-ccchhHHhhccCCcccCCCHHHh
Confidence 44444444444554433 334322333344432 3445555555555 45555543 34555555543 44444444455
Q ss_pred CcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCC
Q 047768 286 SNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADN 353 (1009)
Q Consensus 286 ~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N 353 (1009)
.++++|++|||++|+|+.+++..|.++++|+.+++ +.+..++ .+.++++|+.++++++
T Consensus 199 ~~l~~L~~LdLs~N~l~~lp~~~~~~L~~L~~l~~--~~l~~lP--------~l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 199 HGASGPVILDISRTRIHSLPSYGLENLKKLRARST--YNLKKLP--------TLEKLVALMEASLTYP 256 (350)
T ss_dssp TTEECCSEEECTTSCCCCCCSSSCTTCCEEECTTC--TTCCCCC--------CTTTCCSCCEEECSCH
T ss_pred ccCcccchhhcCCCCcCccChhhhccchHhhhccC--CCcCcCC--------CchhCcChhhCcCCCC
Confidence 66666666666666666655555555555555444 2233222 2456677777777654
No 338
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.88 E-value=4e-23 Score=218.32 Aligned_cols=200 Identities=19% Similarity=0.205 Sum_probs=154.3
Q ss_pred ccceEEEcCCCccccCCCccccCcCccCEEEccCCC-CCCCCCCCcCCcccccceeccc-ccccCCCCcccccccccccc
Q 047768 368 TALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANR-LTGTIPHVIGELKNLQLLHLHA-NFLQGTIPSSLGNLTLLTYL 445 (1009)
Q Consensus 368 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~L~~-N~l~~~~p~~~~~l~~L~~L 445 (1009)
..+++|++++|++++..+..|.++++|+.|++++|+ +++..+..|.++++|++|+|++ |++++..+..|.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 468888888888887777788888899999999887 8877777888888999999988 88887777788888888888
Q ss_pred cccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCC-ccCCCCCCCccCCCCCC-eeecccc
Q 047768 446 SFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDN-LLNGSLPLGVGNLKSLV-RLGIARN 523 (1009)
Q Consensus 446 ~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N-~l~~~~p~~~~~l~~L~-~L~ls~N 523 (1009)
++++|++++ +|. +..+++|+. ...|++++| .+++..+..|.++++|+ +|++++|
T Consensus 111 ~l~~n~l~~-lp~-~~~l~~L~~----------------------L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n 166 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-LTKVYSTDI----------------------FFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNN 166 (239)
T ss_dssp EEEEECCCS-CCC-CTTCCBCCS----------------------EEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSC
T ss_pred eCCCCCCcc-ccc-ccccccccc----------------------ccEEECCCCcchhhcCcccccchhcceeEEEcCCC
Confidence 888888885 665 666666541 013666666 66655556688888888 8888888
Q ss_pred ccCCCccccccCCCCccEEEecCcc-cccccccccccc-cccceEcCCCcccccccccccccccccCceecccc
Q 047768 524 QFSGQIPVTLGACTSLEYVELQGNS-FSGTIPQSLSSL-TSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYN 595 (1009)
Q Consensus 524 ~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l-~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 595 (1009)
+++ .+|......++|+.|+|++|+ +++..+..|.++ ++|+.|||++|++++ +|.. .+++|+.|+++++
T Consensus 167 ~l~-~i~~~~~~~~~L~~L~L~~n~~l~~i~~~~~~~l~~~L~~L~l~~N~l~~-l~~~--~~~~L~~L~l~~~ 236 (239)
T 2xwt_C 167 GFT-SVQGYAFNGTKLDAVYLNKNKYLTVIDKDAFGGVYSGPSLLDVSQTSVTA-LPSK--GLEHLKELIARNT 236 (239)
T ss_dssp CCC-EECTTTTTTCEEEEEECTTCTTCCEECTTTTTTCSBCCSEEECTTCCCCC-CCCT--TCTTCSEEECTTC
T ss_pred CCc-ccCHhhcCCCCCCEEEcCCCCCcccCCHHHhhccccCCcEEECCCCcccc-CChh--HhccCceeeccCc
Confidence 888 555544344788888888884 886667788888 888888888888884 4544 5777888888776
No 339
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.88 E-value=3.2e-25 Score=252.59 Aligned_cols=253 Identities=17% Similarity=0.251 Sum_probs=166.4
Q ss_pred CCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccccceEEccCC---CCCC
Q 047768 281 LPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADN---GFGG 357 (1009)
Q Consensus 281 ~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N---~l~~ 357 (1009)
++..+..+++|++|+|++|++....+.. +...+..+++|++|+|++| ++++
T Consensus 24 l~~~l~~~~~L~~L~L~~n~i~~~~~~~--------------------------l~~~l~~~~~L~~L~Ls~~~~~~l~~ 77 (386)
T 2ca6_A 24 VFAVLLEDDSVKEIVLSGNTIGTEAARW--------------------------LSENIASKKDLEIAEFSDIFTGRVKD 77 (386)
T ss_dssp TSHHHHHCSCCCEEECTTSEECHHHHHH--------------------------HHHTTTTCTTCCEEECCSCCTTSCGG
T ss_pred HHHHHhcCCCccEEECCCCCCCHHHHHH--------------------------HHHHHHhCCCccEEeCcccccCcccc
Confidence 4445555666666666666665433221 1123445566666666664 3333
Q ss_pred cCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCC----CCCCCcCCcccccceecccccccCCCC
Q 047768 358 VLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTG----TIPHVIGELKNLQLLHLHANFLQGTIP 433 (1009)
Q Consensus 358 ~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~~p 433 (1009)
.+|..+..+ ...+..+++|++|+|++|++++ .+|..+..+++|++|+|++|.+++..+
T Consensus 78 ~~~~~~~~l------------------~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~ 139 (386)
T 2ca6_A 78 EIPEALRLL------------------LQALLKCPKLHTVRLSDNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG 139 (386)
T ss_dssp GSHHHHHHH------------------HHHHTTCTTCCEEECCSCCCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH
T ss_pred chhHHHHHH------------------HHHHhhCCcccEEECCCCcCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH
Confidence 444444332 1234566777777777777765 355566667777777777777754333
Q ss_pred ccccc----c---------cccccccccCcccc-cccC---CCCCCCCCccccccCCCCccCCCchhhhhhccceeeEec
Q 047768 434 SSLGN----L---------TLLTYLSFGANNLQ-GNIP---FSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDL 496 (1009)
Q Consensus 434 ~~~~~----l---------~~L~~L~L~~N~l~-~~~p---~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~L 496 (1009)
..+.. + ++|++|++++|+++ +.+| ..+..+++|+. |++
T Consensus 140 ~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~-------------------------L~L 194 (386)
T 2ca6_A 140 AKIARALQELAVNKKAKNAPPLRSIICGRNRLENGSMKEWAKTFQSHRLLHT-------------------------VKM 194 (386)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGGHHHHHHHHHHCTTCCE-------------------------EEC
T ss_pred HHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHHHHHHHHHHHhCCCcCE-------------------------EEC
Confidence 33332 2 56666666666654 2222 23333444444 444
Q ss_pred CCCccC--C---CCCCCccCCCCCCeeeccccccC----CCccccccCCCCccEEEecCcccccc----ccccc--cccc
Q 047768 497 SDNLLN--G---SLPLGVGNLKSLVRLGIARNQFS----GQIPVTLGACTSLEYVELQGNSFSGT----IPQSL--SSLT 561 (1009)
Q Consensus 497 s~N~l~--~---~~p~~~~~l~~L~~L~ls~N~l~----~~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~--~~l~ 561 (1009)
++|+++ | ..|..+..+++|++|+|++|.++ +.+|..+..+++|+.|+|++|++++. +|..+ +.++
T Consensus 195 ~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~ 274 (386)
T 2ca6_A 195 VQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAIALKSWPNLRELGLNDCLLSARGAAAVVDAFSKLENI 274 (386)
T ss_dssp CSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHHHGGGCTTCCEEECTTCCCCHHHHHHHHHHHHTCSSC
T ss_pred cCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHHHHccCCCcCEEECCCCCCchhhHHHHHHHHhhccCC
Confidence 444444 1 23446788899999999999996 67888999999999999999999876 56777 4489
Q ss_pred ccceEcCCCccccc----cccccc-ccccccCceecccccCcccCC
Q 047768 562 SIKELDLSQNNFSG----QIPKYL-ENLSFLQYLNLSYNHFEGEVP 602 (1009)
Q Consensus 562 ~L~~L~Ls~N~l~~----~~p~~~-~~l~~L~~L~ls~N~l~g~~p 602 (1009)
+|+.|+|++|.+++ .+|..+ .++++|++|++++|++++..|
T Consensus 275 ~L~~L~L~~n~i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~ 320 (386)
T 2ca6_A 275 GLQTLRLQYNEIELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDD 320 (386)
T ss_dssp CCCEEECCSSCCBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSH
T ss_pred CeEEEECcCCcCCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchh
Confidence 99999999999997 588887 668999999999999987664
No 340
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.88 E-value=2.6e-22 Score=213.63 Aligned_cols=180 Identities=22% Similarity=0.247 Sum_probs=111.1
Q ss_pred ceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccC
Q 047768 370 LIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGA 449 (1009)
Q Consensus 370 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 449 (1009)
.++++++++.++ .+|..+. ++|+.|+|++|++++..+..|.++++|++|+|++|++++..|..|.++++|++|+|++
T Consensus 16 ~~~l~~~~~~l~-~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~ 92 (251)
T 3m19_A 16 KKEVDCQGKSLD-SVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLAN 92 (251)
T ss_dssp GTEEECTTCCCS-SCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred CeEEecCCCCcc-ccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECCC
Confidence 455666666666 4454443 4666666666666666666666666666666666666655555555566665555555
Q ss_pred cccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCc
Q 047768 450 NNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQI 529 (1009)
Q Consensus 450 N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~ 529 (1009)
|++++..+ ..|..+++|++|+|++|+|++..
T Consensus 93 n~l~~~~~-------------------------------------------------~~~~~l~~L~~L~L~~N~l~~~~ 123 (251)
T 3m19_A 93 NQLASLPL-------------------------------------------------GVFDHLTQLDKLYLGGNQLKSLP 123 (251)
T ss_dssp SCCCCCCT-------------------------------------------------TTTTTCTTCCEEECCSSCCCCCC
T ss_pred CcccccCh-------------------------------------------------hHhcccCCCCEEEcCCCcCCCcC
Confidence 55553333 33445556666666666666555
Q ss_pred cccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCcccC
Q 047768 530 PVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEV 601 (1009)
Q Consensus 530 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~ 601 (1009)
+..|..+++|+.|+|++|+|++..+..|+.+++|++|+|++|+|++..|..|..+++|++|+|++|++++..
T Consensus 124 ~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~~ 195 (251)
T 3m19_A 124 SGVFDRLTKLKELRLNTNQLQSIPAGAFDKLTNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDCSR 195 (251)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCTTS
T ss_pred hhHhccCCcccEEECcCCcCCccCHHHcCcCcCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeCCc
Confidence 555666666666666666666555556666666666666666666555556666666666777777666653
No 341
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.88 E-value=1.7e-22 Score=208.44 Aligned_cols=185 Identities=19% Similarity=0.251 Sum_probs=144.9
Q ss_pred CCCCC-CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccC
Q 047768 53 CVNLC-QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFS 131 (1009)
Q Consensus 53 ~~~~c-~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 131 (1009)
|+..| |+|++|.|+.. +++. +|..+ .++|++|+|++|++++..+..|+++++|++|+|++|+++
T Consensus 1 Cp~~C~C~~~~v~c~~~------------~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 65 (208)
T 2o6s_A 1 CPSRCSCSGTTVECYSQ------------GRTS-VPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQ 65 (208)
T ss_dssp CCTTCEEETTEEECCSS------------CCSS-CCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CcCCCEECCCEEEecCC------------CccC-CCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccC
Confidence 44444 58999999754 2222 23322 468999999999999766777899999999999999999
Q ss_pred CCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcc
Q 047768 132 GRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPIT 211 (1009)
Q Consensus 132 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 211 (1009)
+..+..|.++++|++|++++|++++..+..+ ..+.+|++|+|++|++++..+..|.++++|++|+|++|++++..+..
T Consensus 66 ~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 143 (208)
T 2o6s_A 66 SLPNGVFNKLTSLTYLNLSTNQLQSLPNGVF--DKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQLKSVPDGV 143 (208)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred ccChhhcCCCCCcCEEECCCCcCCccCHhHh--cCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCccceeCHHH
Confidence 7777778999999999999998885444333 56788888888888888777777888888888888888888777777
Q ss_pred cccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhc
Q 047768 212 LSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIG 261 (1009)
Q Consensus 212 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~ 261 (1009)
|..+++|++|+|++|.+.+ .+++|+.|+++.|+++|.+|..++
T Consensus 144 ~~~l~~L~~L~l~~N~~~~-------~~~~l~~L~~~~n~~~g~ip~~~~ 186 (208)
T 2o6s_A 144 FDRLTSLQYIWLHDNPWDC-------TCPGIRYLSEWINKHSGVVRNSAG 186 (208)
T ss_dssp TTTCTTCCEEECCSCCBCC-------CTTTTHHHHHHHHHCTTTBBCTTS
T ss_pred hccCCCccEEEecCCCeec-------CCCCHHHHHHHHHhCCceeeccCc
Confidence 8888888888888887764 345788888888888887776554
No 342
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.88 E-value=1.9e-23 Score=230.06 Aligned_cols=224 Identities=20% Similarity=0.198 Sum_probs=187.2
Q ss_pred eEEEEEeecCCcccccCc---cccCCCCCCeeeecCCcCCccCCccc--cCccccccccccccccCCCCC----CCCcCC
Q 047768 71 RVTKLDLRNQSIGGILSP---YVGNLSFLRYINIADNDFHGEIPDRI--GNLFRLETLVLANNSFSGRIP----TNLSHC 141 (1009)
Q Consensus 71 ~v~~l~l~~~~l~~~~~~---~~~~l~~L~~L~L~~n~~~~~~p~~~--~~l~~L~~L~Ls~N~l~~~~p----~~l~~l 141 (1009)
++..+++.+..++...-. .+..+++|++|+|++|.+++.+|..+ +++++|++|+|++|.+++..| ..+..+
T Consensus 65 ~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~~ 144 (310)
T 4glp_A 65 RVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWLK 144 (310)
T ss_dssp CCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTBC
T ss_pred ceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhhc
Confidence 577888888777542111 12345779999999999999999998 999999999999999998666 345689
Q ss_pred CcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCC--C--CcccCCccccceeecccCcccCCCCc----ccc
Q 047768 142 SKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQ--L--PASIGNLSALRVIDIRTNRLWGKIPI----TLS 213 (1009)
Q Consensus 142 ~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~--~--p~~~~~l~~L~~L~L~~N~l~~~~p~----~~~ 213 (1009)
++|++|++++|.+.+..|..+ ..+++|++|+|++|++.+. + +..++++++|++|+|++|+++. ++. .+.
T Consensus 145 ~~L~~L~Ls~n~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~-l~~~~~~l~~ 221 (310)
T 4glp_A 145 PGLKVLSIAQAHSPAFSCEQV--RAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQNLALRNTGMET-PTGVCAALAA 221 (310)
T ss_dssp SCCCEEEEECCSSCCCCTTSC--CCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCSCBCCSSCCCC-HHHHHHHHHH
T ss_pred cCCCEEEeeCCCcchhhHHHh--ccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCEEECCCCCCCc-hHHHHHHHHh
Confidence 999999999999987766665 6789999999999998752 2 2345789999999999999963 333 357
Q ss_pred cccccccccccCccCCCCCCCcccCC---ChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccc
Q 047768 214 QLTSLAYLHVGDNHFSGTIPPSVYNI---SSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASN 290 (1009)
Q Consensus 214 ~l~~L~~L~L~~N~l~~~~p~~~~~l---~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 290 (1009)
.+++|++|+|++|++++..|..+..+ ++|++|+|++|+++ .+|..++ ++|++|+|++|++++. |. +..+++
T Consensus 222 ~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~---~~L~~L~Ls~N~l~~~-~~-~~~l~~ 295 (310)
T 4glp_A 222 AGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP---AKLRVLDLSSNRLNRA-PQ-PDELPE 295 (310)
T ss_dssp HTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC---SCCSCEECCSCCCCSC-CC-TTSCCC
T ss_pred cCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc---CCCCEEECCCCcCCCC-ch-hhhCCC
Confidence 88999999999999998888888877 69999999999999 8998775 7999999999999975 33 788999
Q ss_pred ccccccccccccc
Q 047768 291 LEVLHLAENQFRG 303 (1009)
Q Consensus 291 L~~L~Ls~N~l~~ 303 (1009)
|++|+|++|+++.
T Consensus 296 L~~L~L~~N~l~~ 308 (310)
T 4glp_A 296 VDNLTLDGNPFLV 308 (310)
T ss_dssp CSCEECSSTTTSC
T ss_pred ccEEECcCCCCCC
Confidence 9999999999874
No 343
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.88 E-value=1.6e-24 Score=244.28 Aligned_cols=233 Identities=17% Similarity=0.182 Sum_probs=122.7
Q ss_pred ceEEEcCCCccccCCC----ccccCcC-ccCEEEccCCCCCCCCCCCcCCc-----ccccceecccccccCCCCcccccc
Q 047768 370 LIDFNLGKNQIYGTIP----PGIANLV-NLNSLRMEANRLTGTIPHVIGEL-----KNLQLLHLHANFLQGTIPSSLGNL 439 (1009)
Q Consensus 370 L~~L~L~~N~l~~~~p----~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l 439 (1009)
|++|+|++|.|++..+ ..|.+++ +|++|+|++|+|++..+..+..+ ++|++|+|++|++++..+..+...
T Consensus 24 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~ 103 (362)
T 3goz_A 24 VTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSYKSSDELVKT 103 (362)
T ss_dssp CCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHH
T ss_pred ceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCChHHHHHHHHH
Confidence 4444444444443333 3344444 44444444444444444433332 444444444444443333322222
Q ss_pred -----cccccccccCcccccccCCCC----CC-CCCccccccCCCCccCCCchhh----hhhccceeeEecCCCccCCCC
Q 047768 440 -----TLLTYLSFGANNLQGNIPFSL----GN-CKNLMFFFAPRNKLTGALPQQI----LEITTLSLSLDLSDNLLNGSL 505 (1009)
Q Consensus 440 -----~~L~~L~L~~N~l~~~~p~~~----~~-l~~L~~l~l~~N~l~~~~p~~~----~~~~~~~~~L~Ls~N~l~~~~ 505 (1009)
++|++|+|++|++++..+..+ .. .++|++|++++|.+++..+..+ .........|+|++|++++..
T Consensus 104 l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~~~ 183 (362)
T 3goz_A 104 LAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQILAAIPANVNSLNLRGNNLASKN 183 (362)
T ss_dssp HHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSC
T ss_pred HHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHHHhcCCccccEeeecCCCCchhh
Confidence 444444444444443322221 11 1344445555554443222221 122213334666666666554
Q ss_pred CCCcc----CC-CCCCeeeccccccCCC----ccccccC-CCCccEEEecCcccccccc----cccccccccceEcCCCc
Q 047768 506 PLGVG----NL-KSLVRLGIARNQFSGQ----IPVTLGA-CTSLEYVELQGNSFSGTIP----QSLSSLTSIKELDLSQN 571 (1009)
Q Consensus 506 p~~~~----~l-~~L~~L~ls~N~l~~~----~p~~~~~-l~~L~~L~L~~N~l~~~~p----~~~~~l~~L~~L~Ls~N 571 (1009)
+..+. .+ ++|++|||++|.+++. ++..+.. .++|+.|+|++|++++..+ ..+..+++|+.|+|++|
T Consensus 184 ~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~~~~l~~L~~L~L~~n 263 (362)
T 3goz_A 184 CAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPSLENLKLLKDSLKHLQTVYLDYD 263 (362)
T ss_dssp HHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCCHHHHHHTTTTTTTCSEEEEEHH
T ss_pred HHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHHHHHHHHHHhcCCCccEEEeccC
Confidence 44333 33 5788888888888752 4555555 3488888888888876544 34466788888888888
Q ss_pred cccc-------ccccccccccccCceecccccCcccCC
Q 047768 572 NFSG-------QIPKYLENLSFLQYLNLSYNHFEGEVP 602 (1009)
Q Consensus 572 ~l~~-------~~p~~~~~l~~L~~L~ls~N~l~g~~p 602 (1009)
.+.+ .++..+..+++|+.||+++|++.+..|
T Consensus 264 ~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~~~~ 301 (362)
T 3goz_A 264 IVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHPSHS 301 (362)
T ss_dssp HHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCGGGC
T ss_pred CccccCHHHHHHHHHHhccCCceEEEecCCCcCCCcch
Confidence 8443 234466777888888888888776533
No 344
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.88 E-value=7.9e-25 Score=244.45 Aligned_cols=215 Identities=17% Similarity=0.255 Sum_probs=116.2
Q ss_pred CCCCCccceeeCCCCCeEEEEEeecCCcccccCccccCC--CCCCeeeecCCcCCccCCccccCccccccccccccccCC
Q 047768 55 NLCQHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNL--SFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSG 132 (1009)
Q Consensus 55 ~~c~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l--~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~ 132 (1009)
..|..|.++.|+.. .++.+|++++.+. +..+..+ +++++|++++|.+++..|. +.++++|++|+|++|.+++
T Consensus 34 ~vc~~W~~~~~~~~--~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~ 107 (336)
T 2ast_B 34 GVCKRWYRLASDES--LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEV 107 (336)
T ss_dssp SSCHHHHHHHTCST--TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECH
T ss_pred HHHHHHHHHhcCch--hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCH
Confidence 45778999988632 4566777776655 3344555 6677777777777655444 4456667777776666664
Q ss_pred C-CCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCc-cCCCC-CCcccCCccccceeecccC-cccCC-
Q 047768 133 R-IPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDN-QLTGQ-LPASIGNLSALRVIDIRTN-RLWGK- 207 (1009)
Q Consensus 133 ~-~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n-~l~~~-~p~~~~~l~~L~~L~L~~N-~l~~~- 207 (1009)
. +|..+.++++|++|++++|.+++..|..+ ..+++|++|+|++| .+++. ++..+.++++|++|++++| .+++.
T Consensus 108 ~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l--~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~ 185 (336)
T 2ast_B 108 STLHGILSQCSKLQNLSLEGLRLSDPIVNTL--AKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKH 185 (336)
T ss_dssp HHHHHHHTTBCCCSEEECTTCBCCHHHHHHH--TTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHH
T ss_pred HHHHHHHhhCCCCCEEeCcCcccCHHHHHHH--hcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHH
Confidence 4 55555666666666666665554444443 23455555555555 34431 3334444555555555555 44332
Q ss_pred CCccccccc-ccccccccCccCCCCCCCcccCCChHHHHHhhCCccC-CCCChhhccCCCcccceeccccc-cCCCCCCC
Q 047768 208 IPITLSQLT-SLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFT-GSLPIEIGKNLPNLRNFVIYTNN-FTGSLPDS 284 (1009)
Q Consensus 208 ~p~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~-~~ip~~~~~~l~~L~~L~L~~N~-l~~~~p~~ 284 (1009)
++..+..++ +|++|+|++|.+ .++ +.+|. .+..+++|++|++++|. +++..+..
T Consensus 186 ~~~~~~~l~~~L~~L~l~~~~~----------------------~~~~~~l~~-~~~~~~~L~~L~l~~~~~l~~~~~~~ 242 (336)
T 2ast_B 186 VQVAVAHVSETITQLNLSGYRK----------------------NLQKSDLST-LVRRCPNLVHLDLSDSVMLKNDCFQE 242 (336)
T ss_dssp HHHHHHHSCTTCCEEECCSCGG----------------------GSCHHHHHH-HHHHCTTCSEEECTTCTTCCGGGGGG
T ss_pred HHHHHHhcccCCCEEEeCCCcc----------------------cCCHHHHHH-HHhhCCCCCEEeCCCCCcCCHHHHHH
Confidence 334444444 455555444421 111 11222 12235556666666665 44444555
Q ss_pred cCcccccccccccccc
Q 047768 285 FSNASNLEVLHLAENQ 300 (1009)
Q Consensus 285 ~~~l~~L~~L~Ls~N~ 300 (1009)
+..+++|++|++++|.
T Consensus 243 l~~l~~L~~L~l~~~~ 258 (336)
T 2ast_B 243 FFQLNYLQHLSLSRCY 258 (336)
T ss_dssp GGGCTTCCEEECTTCT
T ss_pred HhCCCCCCEeeCCCCC
Confidence 5566666666666663
No 345
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.87 E-value=6.8e-23 Score=229.58 Aligned_cols=241 Identities=16% Similarity=0.139 Sum_probs=187.3
Q ss_pred CeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeec
Q 047768 97 RYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVG 176 (1009)
Q Consensus 97 ~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~ 176 (1009)
++++.++++++ .||..+ .+++++|+|++|+|+...+..|+++++|++|+|++|++.
T Consensus 12 ~~v~C~~~~Lt-~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~--------------------- 67 (350)
T 4ay9_X 12 RVFLCQESKVT-EIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVL--------------------- 67 (350)
T ss_dssp TEEEEESTTCC-SCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTC---------------------
T ss_pred CEEEecCCCCC-ccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCC---------------------
Confidence 56788888998 788776 357888999999988544456777777766666665543
Q ss_pred CccCCCCCC-cccCCccccce-eecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhC-CccC
Q 047768 177 DNQLTGQLP-ASIGNLSALRV-IDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYG-NRFT 253 (1009)
Q Consensus 177 ~n~l~~~~p-~~~~~l~~L~~-L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~-N~l~ 253 (1009)
+.+| ..|.++++|+. +.++.|++....|..|..+++|++|++++|++++..+..+....++..|++.+ |++.
T Consensus 68 -----~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~ 142 (350)
T 4ay9_X 68 -----EVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDNINIH 142 (350)
T ss_dssp -----CEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESCTTCC
T ss_pred -----CccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccccccc
Confidence 3333 45788888765 67778999999999999999999999999999977777777888888899876 5666
Q ss_pred CCCChhhccCCC-cccceeccccccCCCCCCCcCccccccccccc-ccccccccccccccccccccccccccccCCCCCC
Q 047768 254 GSLPIEIGKNLP-NLRNFVIYTNNFTGSLPDSFSNASNLEVLHLA-ENQFRGQVSINFNGLKDLSMLGLATNFLGNGAAN 331 (1009)
Q Consensus 254 ~~ip~~~~~~l~-~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls-~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~ 331 (1009)
.+|...|..+. .++.|+|++|+|+.+.+..|. ..+|++|+++ +|.++.+++..|.++++|+.|+|++|.|+.++..
T Consensus 143 -~l~~~~f~~~~~~l~~L~L~~N~i~~i~~~~f~-~~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp~~ 220 (350)
T 4ay9_X 143 -TIERNSFVGLSFESVILWLNKNGIQEIHNSAFN-GTQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLPSY 220 (350)
T ss_dssp -EECTTSSTTSBSSCEEEECCSSCCCEECTTSST-TEEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCCSS
T ss_pred -cccccchhhcchhhhhhccccccccCCChhhcc-ccchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccChh
Confidence 88888877775 689999999999976666664 5689999997 5889988889999999999999999999988762
Q ss_pred CcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCc
Q 047768 332 DLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQ 379 (1009)
Q Consensus 332 ~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~ 379 (1009)
.| .+|+.|.+.++.--..+|. +..+ .+|+.++++++.
T Consensus 221 ------~~---~~L~~L~~l~~~~l~~lP~-l~~l-~~L~~l~l~~~~ 257 (350)
T 4ay9_X 221 ------GL---ENLKKLRARSTYNLKKLPT-LEKL-VALMEASLTYPS 257 (350)
T ss_dssp ------SC---TTCCEEECTTCTTCCCCCC-TTTC-CSCCEEECSCHH
T ss_pred ------hh---ccchHhhhccCCCcCcCCC-chhC-cChhhCcCCCCc
Confidence 23 4455555544433335663 5555 678999998754
No 346
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.87 E-value=2.1e-23 Score=245.35 Aligned_cols=208 Identities=24% Similarity=0.329 Sum_probs=148.5
Q ss_pred CCCCccCCCCCCCC----Cccce-eeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccc
Q 047768 45 TSSWNRSACVNLCQ----HWTGV-TCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFR 119 (1009)
Q Consensus 45 ~~sW~~~~~~~~c~----~w~gv-~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~ 119 (1009)
+.+|... ..+|. .|.|+ .|.. .+++.|+|++|++++ +|+.+. ++|++|+|++|+|+ .+| +.+++
T Consensus 33 l~~W~~~--~~~~~~~~~~~~~l~~C~~--~~L~~L~Ls~n~L~~-lp~~l~--~~L~~L~Ls~N~l~-~ip---~~l~~ 101 (571)
T 3cvr_A 33 WDKWEKQ--ALPGENRNEAVSLLKECLI--NQFSELQLNRLNLSS-LPDNLP--PQITVLEITQNALI-SLP---ELPAS 101 (571)
T ss_dssp HHHHHTT--CCTTCCHHHHHHHHHHHHH--TTCSEEECCSSCCSC-CCSCCC--TTCSEEECCSSCCS-CCC---CCCTT
T ss_pred HHHHhcc--CCccccccchhhhcccccc--CCccEEEeCCCCCCc-cCHhHc--CCCCEEECcCCCCc-ccc---cccCC
Confidence 4567543 23442 59999 7863 378999999999988 666663 88999999999999 788 55789
Q ss_pred cccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeec
Q 047768 120 LETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDI 199 (1009)
Q Consensus 120 L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L 199 (1009)
|++|+|++|+|++ +|. +.+ +|++|++++|++++ +|. .+++|++|+|++|+|++ +|. .+++|++|+|
T Consensus 102 L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls~N~l~~-lp~-----~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~L~L 167 (571)
T 3cvr_A 102 LEYLDACDNRLST-LPE-LPA--SLKHLDVDNNQLTM-LPE-----LPALLEYINADNNQLTM-LPE---LPTSLEVLSV 167 (571)
T ss_dssp CCEEECCSSCCSC-CCC-CCT--TCCEEECCSSCCSC-CCC-----CCTTCCEEECCSSCCSC-CCC---CCTTCCEEEC
T ss_pred CCEEEccCCCCCC-cch-hhc--CCCEEECCCCcCCC-CCC-----cCccccEEeCCCCccCc-CCC---cCCCcCEEEC
Confidence 9999999999997 777 665 89999999999886 665 36788888888888885 555 5678888888
Q ss_pred ccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChH-------HHHHhhCCccCCCCChhhccCCCcccceec
Q 047768 200 RTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSL-------VEIYLYGNRFTGSLPIEIGKNLPNLRNFVI 272 (1009)
Q Consensus 200 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L 272 (1009)
++|+|++ +|. |. ++|++|+|++|+|+ .+|. |.. +| +.|+|++|+|+ .+|..++. +++|+.|+|
T Consensus 168 s~N~L~~-lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~-l~~L~~L~L 237 (571)
T 3cvr_A 168 RNNQLTF-LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILS-LDPTCTIIL 237 (571)
T ss_dssp CSSCCSC-CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGG-SCTTEEEEC
T ss_pred CCCCCCC-cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhc-CCCCCEEEe
Confidence 8888876 555 65 78888888888888 6666 543 44 55555555555 45554443 555555555
Q ss_pred cccccCCCCCCCcCc
Q 047768 273 YTNNFTGSLPDSFSN 287 (1009)
Q Consensus 273 ~~N~l~~~~p~~~~~ 287 (1009)
++|.+++.+|..|..
T Consensus 238 ~~N~l~~~~p~~l~~ 252 (571)
T 3cvr_A 238 EDNPLSSRIRESLSQ 252 (571)
T ss_dssp CSSSCCHHHHHHHHH
T ss_pred eCCcCCCcCHHHHHH
Confidence 555554444444433
No 347
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=5.4e-22 Score=217.79 Aligned_cols=62 Identities=26% Similarity=0.379 Sum_probs=32.3
Q ss_pred ccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccc
Q 047768 509 VGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFS 574 (1009)
Q Consensus 509 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 574 (1009)
+..+++|+.|++++|++++..+ +..+++|+.|+|++|++++..| +..+++|+.|+|++|.++
T Consensus 169 l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~ 230 (308)
T 1h6u_A 169 LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTIT 230 (308)
T ss_dssp GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEE
T ss_pred hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeee
Confidence 4445555555555555553322 4555555555555555553332 455555555555555554
No 348
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.86 E-value=5.1e-25 Score=250.85 Aligned_cols=96 Identities=18% Similarity=0.194 Sum_probs=52.0
Q ss_pred cCCccccCccccccccccccccCCC----CCCCCcCCCcCcEEecccc---cccCCCchHHh-----hhccCCcCeEeec
Q 047768 109 EIPDRIGNLFRLETLVLANNSFSGR----IPTNLSHCSKLITFSAHRN---NLVGEIPEELI-----SRRLFNLQGLSVG 176 (1009)
Q Consensus 109 ~~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~n---~l~~~~p~~~~-----~~~l~~L~~L~L~ 176 (1009)
.++..+..+++|++|+|++|.+++. ++..+.++++|++|+|++| ++.+.+|..+. ...+++|++|+|+
T Consensus 23 ~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls 102 (386)
T 2ca6_A 23 SVFAVLLEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLS 102 (386)
T ss_dssp TTSHHHHHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECC
T ss_pred HHHHHHhcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECC
Confidence 4666677777777777777777654 3344667777777777774 34445555441 0223444444444
Q ss_pred CccCCC----CCCcccCCccccceeecccCcc
Q 047768 177 DNQLTG----QLPASIGNLSALRVIDIRTNRL 204 (1009)
Q Consensus 177 ~n~l~~----~~p~~~~~l~~L~~L~L~~N~l 204 (1009)
+|.+++ .+|..+.++++|++|+|++|.+
T Consensus 103 ~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l 134 (386)
T 2ca6_A 103 DNAFGPTAQEPLIDFLSKHTPLEHLYLHNNGL 134 (386)
T ss_dssp SCCCCTTTHHHHHHHHHHCTTCCEEECCSSCC
T ss_pred CCcCCHHHHHHHHHHHHhCCCCCEEECcCCCC
Confidence 444443 2333344444444444444444
No 349
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.86 E-value=1.1e-21 Score=215.44 Aligned_cols=191 Identities=24% Similarity=0.350 Sum_probs=141.8
Q ss_pred cceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCccccccccccccccc
Q 047768 369 ALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFG 448 (1009)
Q Consensus 369 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 448 (1009)
.|+.|++++|.++. +| .+..+++|+.|+|++|++++..+ +..+++|++|+|++|++++. + .+..+++|++|+++
T Consensus 42 ~L~~L~l~~~~i~~-l~-~~~~l~~L~~L~L~~n~i~~~~~--~~~l~~L~~L~L~~n~l~~~-~-~~~~l~~L~~L~l~ 115 (308)
T 1h6u_A 42 GITTLSAFGTGVTT-IE-GVQYLNNLIGLELKDNQITDLAP--LKNLTKITELELSGNPLKNV-S-AIAGLQSIKTLDLT 115 (308)
T ss_dssp TCCEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCCSCCEEECCSCCCSCC-G-GGTTCTTCCEEECT
T ss_pred CcCEEEeeCCCccC-ch-hhhccCCCCEEEccCCcCCCChh--HccCCCCCEEEccCCcCCCc-h-hhcCCCCCCEEECC
Confidence 34455555555542 33 46667777777777777775444 77777777777777777743 3 57777777777777
Q ss_pred CcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCC
Q 047768 449 ANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQ 528 (1009)
Q Consensus 449 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 528 (1009)
+|++++. |. +..+++|+.|++++| ++++..+ ++.+++|++|++++|++++.
T Consensus 116 ~n~l~~~-~~-l~~l~~L~~L~l~~n-------------------------~l~~~~~--l~~l~~L~~L~l~~n~l~~~ 166 (308)
T 1h6u_A 116 STQITDV-TP-LAGLSNLQVLYLDLN-------------------------QITNISP--LAGLTNLQYLSIGNAQVSDL 166 (308)
T ss_dssp TSCCCCC-GG-GTTCTTCCEEECCSS-------------------------CCCCCGG--GGGCTTCCEEECCSSCCCCC
T ss_pred CCCCCCc-hh-hcCCCCCCEEECCCC-------------------------ccCcCcc--ccCCCCccEEEccCCcCCCC
Confidence 7777753 32 666666665444444 4443222 77889999999999999964
Q ss_pred ccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCccc
Q 047768 529 IPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGE 600 (1009)
Q Consensus 529 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ 600 (1009)
.+ +..+++|+.|+|++|++++..+ +..+++|++|+|++|++++..| +..+++|++|++++|++++.
T Consensus 167 ~~--l~~l~~L~~L~l~~n~l~~~~~--l~~l~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~l~~N~i~~~ 232 (308)
T 1h6u_A 167 TP--LANLSKLTTLKADDNKISDISP--LASLPNLIEVHLKNNQISDVSP--LANTSNLFIVTLTNQTITNQ 232 (308)
T ss_dssp GG--GTTCTTCCEEECCSSCCCCCGG--GGGCTTCCEEECTTSCCCBCGG--GTTCTTCCEEEEEEEEEECC
T ss_pred hh--hcCCCCCCEEECCCCccCcChh--hcCCCCCCEEEccCCccCcccc--ccCCCCCCEEEccCCeeecC
Confidence 44 9999999999999999996554 8999999999999999996553 89999999999999999863
No 350
>1zar_A RIO2 kinase; serine kinase, winged-helix, RIO domain, ADP-Mn complex, rRNA processing, transferase; HET: ADP; 1.75A {Archaeoglobus fulgidus} SCOP: a.4.5.56 d.144.1.9 PDB: 1tqi_A* 1tqp_A* 1tqm_A* 1zao_A*
Probab=99.86 E-value=4.6e-22 Score=214.57 Aligned_cols=164 Identities=18% Similarity=0.138 Sum_probs=126.2
Q ss_pred HHHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc------------------chHHHHHHHHHHHhc
Q 047768 694 KELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG------------------GSKSFAAECEALRSI 755 (1009)
Q Consensus 694 ~~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~------------------~~~~~~~E~~~l~~l 755 (1009)
..+......|.+.+.||+|+||.||+|.+ .+|+.||||+++..... ....+.+|+++++++
T Consensus 83 ~~~~~~~~~~~~~~~iG~G~~g~Vy~~~~-~~g~~valK~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~E~~~l~~l 161 (282)
T 1zar_A 83 HRLVRSGKVDAIGKLMGEGKESAVFNCYS-EKFGECVVKFHKVGHTSFKKVKEKRDYGDLHFSVLAIRSARNEFRALQKL 161 (282)
T ss_dssp HHHHHTTSCSEEEEEEEECSSEEEEEEEE-TTTEEEEEEEECC------CCCC-------CHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHhCCeEEEecCEeccCCCceEEEEEe-CCCCEEEEEEEECCCCchhhhhhhhhhcchhhHHHHHHHHHHHHHHHHhc
Confidence 34445556677889999999999999999 78999999999643211 234688999999999
Q ss_pred CCCCcceEEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCcee
Q 047768 756 RHRNLIKIVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVH 835 (1009)
Q Consensus 756 ~h~niv~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivH 835 (1009)
+| +++.+++.. ...++||||+++|+|.+ +.. .+...++.|++.|+.|||+. +|+|
T Consensus 162 ~~---~~v~~~~~~------~~~~lvmE~~~g~~L~~-l~~------------~~~~~i~~qi~~~l~~lH~~---giiH 216 (282)
T 1zar_A 162 QG---LAVPKVYAW------EGNAVLMELIDAKELYR-VRV------------ENPDEVLDMILEEVAKFYHR---GIVH 216 (282)
T ss_dssp TT---SSSCCEEEE------ETTEEEEECCCCEEGGG-CCC------------SCHHHHHHHHHHHHHHHHHT---TEEC
T ss_pred cC---CCcCeEEec------cceEEEEEecCCCcHHH-cch------------hhHHHHHHHHHHHHHHHHHC---CCEe
Confidence 94 455554322 44589999999999988 422 12346999999999999999 9999
Q ss_pred cCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccccccccCccccCC----------CCCCCcccchH
Q 047768 836 GDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLG----------GEASMRGGVYS 905 (1009)
Q Consensus 836 rdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~----------~~~~~~~DvwS 905 (1009)
|||||+||+++ ++.+||+|||+|+. +..|+|||++.. ..++.++|+|.
T Consensus 217 rDlkp~NILl~-~~~vkl~DFG~a~~---------------------~~~~~a~e~l~rdv~~i~~~f~~~~~~~~~~~~ 274 (282)
T 1zar_A 217 GDLSQYNVLVS-EEGIWIIDFPQSVE---------------------VGEEGWREILERDVRNIITYFSRTYRTEKDINS 274 (282)
T ss_dssp SCCSTTSEEEE-TTEEEECCCTTCEE---------------------TTSTTHHHHHHHHHHHHHHHHHHHHCCCCCHHH
T ss_pred CCCCHHHEEEE-CCcEEEEECCCCeE---------------------CCCCCHHHHHHHHHHHHHHHHHHhcCCCCChHH
Confidence 99999999999 99999999999973 335788998654 34455556653
No 351
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.85 E-value=8.3e-23 Score=228.04 Aligned_cols=253 Identities=16% Similarity=0.174 Sum_probs=182.1
Q ss_pred ccceEEccCCCCCCcCchhhhhh-cccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCC-CCCCcCCcccccce
Q 047768 344 KLQYLYLADNGFGGVLPHSIANL-STALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGT-IPHVIGELKNLQLL 421 (1009)
Q Consensus 344 ~L~~L~L~~N~l~~~~p~~~~~l-~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L 421 (1009)
.++.+++++|.+. +..+..+ ...++.|++++|.+.+..+. +..+++|++|+|++|.+++. +|..+..+++|++|
T Consensus 48 ~~~~l~l~~~~~~---~~~~~~~~~~~l~~L~l~~n~l~~~~~~-~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L 123 (336)
T 2ast_B 48 LWQTLDLTGKNLH---PDVTGRLLSQGVIAFRCPRSFMDQPLAE-HFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNL 123 (336)
T ss_dssp TSSEEECTTCBCC---HHHHHHHHHTTCSEEECTTCEECSCCCS-CCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEE
T ss_pred hheeeccccccCC---HHHHHhhhhccceEEEcCCccccccchh-hccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEE
Confidence 3667777777665 3344433 24577777777777766554 45677888888888877655 66677777888888
Q ss_pred ecccccccCCCCcccccccccccccccCc-ccccc-cCCCCCCCCCccccccCCC-CccCC-CchhhhhhccceeeEecC
Q 047768 422 HLHANFLQGTIPSSLGNLTLLTYLSFGAN-NLQGN-IPFSLGNCKNLMFFFAPRN-KLTGA-LPQQILEITTLSLSLDLS 497 (1009)
Q Consensus 422 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N-~l~~~-~p~~~~~l~~L~~l~l~~N-~l~~~-~p~~~~~~~~~~~~L~Ls 497 (1009)
+|++|.+++..|..++.+++|++|++++| .+++. +|..+.++++|++|++++| .+++. ++..+.........|+++
T Consensus 124 ~L~~~~l~~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~ 203 (336)
T 2ast_B 124 SLEGLRLSDPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLS 203 (336)
T ss_dssp ECTTCBCCHHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECC
T ss_pred eCcCcccCHHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeC
Confidence 88888777777777777788888888887 56652 5555677777888888877 77653 444444444134458888
Q ss_pred CC--ccC-CCCCCCccCCCCCCeeeccccc-cCCCccccccCCCCccEEEecCcc-cccccccccccccccceEcCCCcc
Q 047768 498 DN--LLN-GSLPLGVGNLKSLVRLGIARNQ-FSGQIPVTLGACTSLEYVELQGNS-FSGTIPQSLSSLTSIKELDLSQNN 572 (1009)
Q Consensus 498 ~N--~l~-~~~p~~~~~l~~L~~L~ls~N~-l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l~~L~~L~Ls~N~ 572 (1009)
+| .++ +.+|..+.++++|++|++++|. +++..+..+..+++|+.|+|++|. +.......++++++|+.|+|++|
T Consensus 204 ~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~l~~~~~L~~L~l~~~- 282 (336)
T 2ast_B 204 GYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLELGEIPTLKTLQVFGI- 282 (336)
T ss_dssp SCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGGGGGCTTCCEEECTTS-
T ss_pred CCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHHHhcCCCCCEEeccCc-
Confidence 88 454 4566677889999999999999 777888899999999999999995 33332336888999999999998
Q ss_pred ccccccccccccc-ccCceecccccCcccCCCC
Q 047768 573 FSGQIPKYLENLS-FLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 573 l~~~~p~~~~~l~-~L~~L~ls~N~l~g~~p~~ 604 (1009)
++ ...+..+. .|+.|++++|++++..|..
T Consensus 283 i~---~~~~~~l~~~l~~L~l~~n~l~~~~~~~ 312 (336)
T 2ast_B 283 VP---DGTLQLLKEALPHLQINCSHFTTIARPT 312 (336)
T ss_dssp SC---TTCHHHHHHHSTTSEESCCCSCCTTCSS
T ss_pred cC---HHHHHHHHhhCcceEEecccCccccCCc
Confidence 43 23455553 4888889999999988864
No 352
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.84 E-value=3e-21 Score=227.04 Aligned_cols=189 Identities=23% Similarity=0.355 Sum_probs=124.2
Q ss_pred ccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceec
Q 047768 344 KLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHL 423 (1009)
Q Consensus 344 ~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 423 (1009)
+|+.|+|++|++++ +|..+. ..|+.|+|++|+|+ .+| ..+++|+.|+|++|+|++ +|. +.+ +|++|+|
T Consensus 60 ~L~~L~Ls~n~L~~-lp~~l~---~~L~~L~Ls~N~l~-~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~L 127 (571)
T 3cvr_A 60 QFSELQLNRLNLSS-LPDNLP---PQITVLEITQNALI-SLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDV 127 (571)
T ss_dssp TCSEEECCSSCCSC-CCSCCC---TTCSEEECCSSCCS-CCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEEC
T ss_pred CccEEEeCCCCCCc-cCHhHc---CCCCEEECcCCCCc-ccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEEC
Confidence 67777777777775 454442 45677777777776 445 345677777777777775 454 544 6777777
Q ss_pred ccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCC
Q 047768 424 HANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNG 503 (1009)
Q Consensus 424 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~ 503 (1009)
++|+|++ +|. .+++|++|+|++|+|++ +|. .+++|+. |+|++|+|++
T Consensus 128 s~N~l~~-lp~---~l~~L~~L~Ls~N~l~~-lp~---~l~~L~~-------------------------L~Ls~N~L~~ 174 (571)
T 3cvr_A 128 DNNQLTM-LPE---LPALLEYINADNNQLTM-LPE---LPTSLEV-------------------------LSVRNNQLTF 174 (571)
T ss_dssp CSSCCSC-CCC---CCTTCCEEECCSSCCSC-CCC---CCTTCCE-------------------------EECCSSCCSC
T ss_pred CCCcCCC-CCC---cCccccEEeCCCCccCc-CCC---cCCCcCE-------------------------EECCCCCCCC
Confidence 7777765 444 45667777777777664 443 2334433 5555555554
Q ss_pred CCCCCccCCCCCCeeeccccccCCCccccccCCCCc-------cEEEecCcccccccccccccccccceEcCCCcccccc
Q 047768 504 SLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSL-------EYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQ 576 (1009)
Q Consensus 504 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L-------~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 576 (1009)
+|. |. ++|+.|+|++|+|+ .+|. +.. +| +.|+|++|+|+ .+|..+..+++|+.|+|++|.|++.
T Consensus 175 -lp~-l~--~~L~~L~Ls~N~L~-~lp~-~~~--~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~ 245 (571)
T 3cvr_A 175 -LPE-LP--ESLEALDVSTNLLE-SLPA-VPV--RNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSR 245 (571)
T ss_dssp -CCC-CC--TTCCEEECCSSCCS-SCCC-CC----------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHH
T ss_pred -cch-hh--CCCCEEECcCCCCC-chhh-HHH--hhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCc
Confidence 555 54 67888888888887 5666 554 66 88888888887 5777777788888888888888888
Q ss_pred cccccccccc
Q 047768 577 IPKYLENLSF 586 (1009)
Q Consensus 577 ~p~~~~~l~~ 586 (1009)
+|..+..+..
T Consensus 246 ~p~~l~~l~~ 255 (571)
T 3cvr_A 246 IRESLSQQTA 255 (571)
T ss_dssp HHHHHHHHHH
T ss_pred CHHHHHHhhc
Confidence 8877776654
No 353
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.84 E-value=1e-20 Score=195.08 Aligned_cols=74 Identities=30% Similarity=0.291 Sum_probs=41.4
Q ss_pred CccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCC
Q 047768 392 VNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKN 465 (1009)
Q Consensus 392 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~ 465 (1009)
++|++|++++|++++..+..|..+++|++|+|++|++++..+..|.++++|++|++++|++++..+..+.++++
T Consensus 28 ~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~ 101 (208)
T 2o6s_A 28 AQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQLQSLPNGVFDKLTQ 101 (208)
T ss_dssp TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcCCccCHhHhcCccC
Confidence 35666666666666555555666666666666666666544444555566666555555555333333333333
No 354
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.82 E-value=2.8e-23 Score=245.99 Aligned_cols=222 Identities=17% Similarity=0.155 Sum_probs=166.3
Q ss_pred CccceeeCCCCCeEEEEEeecCCccc-------------------------ccCc---cccCCCCCCeeeecCCcCCccC
Q 047768 59 HWTGVTCGRRNQRVTKLDLRNQSIGG-------------------------ILSP---YVGNLSFLRYINIADNDFHGEI 110 (1009)
Q Consensus 59 ~w~gv~C~~~~~~v~~l~l~~~~l~~-------------------------~~~~---~~~~l~~L~~L~L~~n~~~~~~ 110 (1009)
.|.++.|+....+|..+++..-.+.. .... .+...++|+.|+|++|+++ .+
T Consensus 286 ~W~~~~~~~~~~~vw~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~L~~L~Ls~n~L~-~L 364 (567)
T 1dce_A 286 EWRTPDGRNRPSHVWLCDLPAASLNDQLPQHTFRVIWTGSDSQKECVLLKDRPECWCRDSATDEQLFRCELSVEKST-VL 364 (567)
T ss_dssp CCBCTTSSCCSEEEEEEECCGGGTSTTSSEEEEEEEETTTTEEEEEEEETTCSEEEEECCSTTTTSSSCCCCHHHHH-HH
T ss_pred eeccCCcccccceeEEeecCccccccccccceEEEeeccCCCCccccccCCCchhhhcccccCccceeccCChhhHH-hh
Confidence 58888888777788888876543321 1111 1367889999999999998 89
Q ss_pred CccccCccccccccccccc-------------cCCCCCCCCcCCCcCcEEe-cccccccCCCchHHhhhccCCcCeEeec
Q 047768 111 PDRIGNLFRLETLVLANNS-------------FSGRIPTNLSHCSKLITFS-AHRNNLVGEIPEELISRRLFNLQGLSVG 176 (1009)
Q Consensus 111 p~~~~~l~~L~~L~Ls~N~-------------l~~~~p~~l~~l~~L~~L~-l~~n~l~~~~p~~~~~~~l~~L~~L~L~ 176 (1009)
|+.+++|++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+ .+|+.+.++
T Consensus 365 p~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~-------------~~L~~l~l~ 431 (567)
T 1dce_A 365 QSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYL-------------DDLRSKFLL 431 (567)
T ss_dssp HHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHH-------------HHHHHHHHH
T ss_pred HHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhccc-------------chhhhhhhh
Confidence 9999999999999998876 5677788888888888888 666543 245556666
Q ss_pred CccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCC
Q 047768 177 DNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSL 256 (1009)
Q Consensus 177 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~i 256 (1009)
+|.++...+ ..|+.|+|++|+|++ +|. |+.+++|++|+|++|+|+ .+|..|.++++|+.|+|++|+|+ .+
T Consensus 432 ~n~i~~l~~------~~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~-~l 501 (567)
T 1dce_A 432 ENSVLKMEY------ADVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALE-NV 501 (567)
T ss_dssp HHHHHHHHH------TTCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCC-CC
T ss_pred cccccccCc------cCceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCC-CC
Confidence 676663222 247778888888865 455 778888888888888887 67777878888888888888887 46
Q ss_pred ChhhccCCCcccceeccccccCCCC-CCCcCcccccccccccccccccccc
Q 047768 257 PIEIGKNLPNLRNFVIYTNNFTGSL-PDSFSNASNLEVLHLAENQFRGQVS 306 (1009)
Q Consensus 257 p~~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~~ 306 (1009)
| .+.++++|+.|+|++|+|++.. |..|+++++|++|+|++|++++.++
T Consensus 502 p--~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~ 550 (567)
T 1dce_A 502 D--GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEG 550 (567)
T ss_dssp G--GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSS
T ss_pred c--ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCcc
Confidence 6 3456888888888888888776 8888888888888888888887655
No 355
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.82 E-value=2.2e-21 Score=237.09 Aligned_cols=234 Identities=21% Similarity=0.192 Sum_probs=134.0
Q ss_pred CChhhHHHHHHHHHhcCC-CCCCCCCCccCCCCCCCCCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCe---
Q 047768 23 SNETDCLSLLAIKSQLHD-PLGVTSSWNRSACVNLCQHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRY--- 98 (1009)
Q Consensus 23 ~~~~d~~aLl~~k~~~~~-~~~~~~sW~~~~~~~~c~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~--- 98 (1009)
....++++|+++..++.. ....-..|.... ..+..|.+++++. ++++.|+|.++++... +..+.....|+.
T Consensus 129 ~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~s~--~~~~~l~L~~n~~~~~-~~~~l~~l~Ls~~~i 203 (727)
T 4b8c_D 129 LVDCTKQALMEMADTLTDSKTAKKQQPTGDS--TPSGTATNSAVST--PLTPKIELFANGKDEA-NQALLQHKKLSQYSI 203 (727)
T ss_dssp ---CCCHHHHHHHHHHHHHHTTC---------------------------------------------------------
T ss_pred ccccchhhhhhhhhhcccccCcccCCCcCCC--CccccCCCceecC--CccceEEeeCCCCCcc-hhhHhhcCccCcccc
Confidence 456889999999987522 222334675443 2234799998875 5899999999988774 333322222222
Q ss_pred --eeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeec
Q 047768 99 --INIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVG 176 (1009)
Q Consensus 99 --L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~ 176 (1009)
++++.|.+. ..|+.|..++.|+.|+|++|.+. .+|..+.++++|++|+|++|.++ .+|..+ ..+.+|++|+|+
T Consensus 204 ~~~~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~--~~l~~L~~L~Ls 278 (727)
T 4b8c_D 204 DEDDDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEI--KNLSNLRVLDLS 278 (727)
T ss_dssp -------------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGG--GGGTTCCEEECT
T ss_pred cCcccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhh--hCCCCCCEEeCc
Confidence 233334444 56788999999999999999998 78888889999999999999998 888776 678999999999
Q ss_pred CccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCCh-HHHHHhhCCccCCC
Q 047768 177 DNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISS-LVEIYLYGNRFTGS 255 (1009)
Q Consensus 177 ~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~-L~~L~L~~N~l~~~ 255 (1009)
+|.|+ .+|..|++|++|++|+|++|.|+ .+|..|+.+++|++|+|++|.|++.+|..+..+.. +..|+|++|.++|.
T Consensus 279 ~N~l~-~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~ 356 (727)
T 4b8c_D 279 HNRLT-SLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIP 356 (727)
T ss_dssp TSCCS-SCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCC
T ss_pred CCcCC-ccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCc
Confidence 99999 77999999999999999999995 77888999999999999999999888888766543 34588999999887
Q ss_pred CChhhccCCCcccceecccc
Q 047768 256 LPIEIGKNLPNLRNFVIYTN 275 (1009)
Q Consensus 256 ip~~~~~~l~~L~~L~L~~N 275 (1009)
+|. .|+.|+++.|
T Consensus 357 ~p~-------~l~~l~l~~n 369 (727)
T 4b8c_D 357 LPH-------ERRFIEINTD 369 (727)
T ss_dssp CCC-------C---------
T ss_pred Ccc-------ccceeEeecc
Confidence 774 3556667666
No 356
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.81 E-value=2.2e-20 Score=194.04 Aligned_cols=182 Identities=16% Similarity=0.113 Sum_probs=144.3
Q ss_pred ccceecccccccCCCCcccccccccccccccCcccccccC-CCCCCCCCccccccCCCCccCCCchhhhhhccceeeEec
Q 047768 418 LQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIP-FSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDL 496 (1009)
Q Consensus 418 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~L 496 (1009)
-+.+++++|.++ .+|..+. ..+++|+|++|+|++..| ..|..+++|+. |+|
T Consensus 13 ~~~l~~s~n~l~-~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~-------------------------L~L 64 (220)
T 2v70_A 13 GTTVDCSNQKLN-KIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRK-------------------------INF 64 (220)
T ss_dssp TTEEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCE-------------------------EEC
T ss_pred CCEeEeCCCCcc-cCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCE-------------------------EEC
Confidence 357899999998 4666553 356789999999987655 34677777665 556
Q ss_pred CCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccc
Q 047768 497 SDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQ 576 (1009)
Q Consensus 497 s~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~ 576 (1009)
++|++++..|..|.++++|++|+|++|++++..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+|++.
T Consensus 65 ~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~ 144 (220)
T 2v70_A 65 SNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTV 144 (220)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCB
T ss_pred CCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEE
Confidence 66666656667899999999999999999988888899999999999999999999999999999999999999999998
Q ss_pred cccccccccccCceecccccCcccCCCCCcccCccccccccCCCcCCCCCC
Q 047768 577 IPKYLENLSFLQYLNLSYNHFEGEVPTKGIFKNKTGFSIVGNGKLCGGLDE 627 (1009)
Q Consensus 577 ~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~ 627 (1009)
.|..|..+++|++|+|++|+++|.++..+....+....+......|+.|..
T Consensus 145 ~~~~~~~l~~L~~L~L~~N~l~c~c~l~~l~~~~~~~~~~~~~~~C~~P~~ 195 (220)
T 2v70_A 145 APGAFDTLHSLSTLNLLANPFNCNCYLAWLGEWLRKKRIVTGNPRCQKPYF 195 (220)
T ss_dssp CTTTTTTCTTCCEEECCSCCEECSGGGHHHHHHHHHSCCBCCCCEEEESGG
T ss_pred CHHHhcCCCCCCEEEecCcCCcCCCchHHHHHHHHhcCccccCCccCCChH
Confidence 899999999999999999999998885432222221222223346766654
No 357
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.81 E-value=3.5e-20 Score=192.52 Aligned_cols=156 Identities=19% Similarity=0.231 Sum_probs=96.6
Q ss_pred CEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCC
Q 047768 395 NSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRN 474 (1009)
Q Consensus 395 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N 474 (1009)
+.+++++|.++ .+|..+. ++|++|+|++|+|++..+..|..+++|++|+|++|+|++.
T Consensus 14 ~~v~c~~~~l~-~iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~------------------- 71 (220)
T 2v9t_B 14 NIVDCRGKGLT-EIPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISEL------------------- 71 (220)
T ss_dssp TEEECTTSCCS-SCCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEE-------------------
T ss_pred CEEEcCCCCcC-cCCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCc-------------------
Confidence 45666666666 3444332 4556666666666554444555555555555555555443
Q ss_pred CccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccc
Q 047768 475 KLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIP 554 (1009)
Q Consensus 475 ~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p 554 (1009)
.|..|.++++|++|+|++|+|++..+..|..+++|+.|+|++|+|++..|
T Consensus 72 ------------------------------~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~l~~~~~ 121 (220)
T 2v9t_B 72 ------------------------------APDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLLNANKINCLRV 121 (220)
T ss_dssp ------------------------------CTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred ------------------------------CHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEECCCCCCCEeCH
Confidence 34455555666666666666664444456666777777777777776666
Q ss_pred cccccccccceEcCCCcccccccccccccccccCceecccccCcccCC
Q 047768 555 QSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVP 602 (1009)
Q Consensus 555 ~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p 602 (1009)
..|..+++|++|+|++|+|++..+..|..+++|++|+|++|++.+.++
T Consensus 122 ~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~ 169 (220)
T 2v9t_B 122 DAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQNPFICDCH 169 (220)
T ss_dssp TTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCEECSGG
T ss_pred HHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCCCCcCCCCc
Confidence 667777777777777777776666667777777777777777766554
No 358
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.80 E-value=1.3e-19 Score=188.10 Aligned_cols=161 Identities=21% Similarity=0.317 Sum_probs=130.7
Q ss_pred CCCCCC-CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCcccccccccccccc
Q 047768 52 ACVNLC-QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSF 130 (1009)
Q Consensus 52 ~~~~~c-~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l 130 (1009)
.|+..| |.|..|.|.. ++++. +|..+. ++|++|+|++|+|++..|..|.++++|++|+|++|++
T Consensus 4 ~CP~~C~C~~~~v~c~~------------~~l~~-iP~~l~--~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i 68 (220)
T 2v9t_B 4 HCPAACTCSNNIVDCRG------------KGLTE-IPTNLP--ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQI 68 (220)
T ss_dssp CSCTTSEEETTEEECTT------------SCCSS-CCSSCC--TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCC
T ss_pred CCCCCCEECCCEEEcCC------------CCcCc-CCCccC--cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcC
Confidence 466666 5677777754 34433 344443 6899999999999977777899999999999999999
Q ss_pred CCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCc
Q 047768 131 SGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPI 210 (1009)
Q Consensus 131 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 210 (1009)
++..|..|.++++|++|+|++|+++ .+|...+ ..+.+|++|+|++|+|++..|..|.++++|++|+|++|+|++..+.
T Consensus 69 ~~~~~~~~~~l~~L~~L~Ls~N~l~-~l~~~~f-~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~ 146 (220)
T 2v9t_B 69 SELAPDAFQGLRSLNSLVLYGNKIT-ELPKSLF-EGLFSLQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKG 146 (220)
T ss_dssp CEECTTTTTTCSSCCEEECCSSCCC-CCCTTTT-TTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTT
T ss_pred CCcCHHHhhCCcCCCEEECCCCcCC-ccCHhHc-cCCCCCCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHH
Confidence 9888999999999999999999988 4555443 5678888888888888888788888888888888888888888778
Q ss_pred ccccccccccccccCccCC
Q 047768 211 TLSQLTSLAYLHVGDNHFS 229 (1009)
Q Consensus 211 ~~~~l~~L~~L~L~~N~l~ 229 (1009)
.|..+++|++|+|++|.+.
T Consensus 147 ~~~~l~~L~~L~L~~N~~~ 165 (220)
T 2v9t_B 147 TFSPLRAIQTMHLAQNPFI 165 (220)
T ss_dssp TTTTCTTCCEEECCSSCEE
T ss_pred HHhCCCCCCEEEeCCCCcC
Confidence 8888888888888888876
No 359
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.80 E-value=1.4e-19 Score=188.03 Aligned_cols=153 Identities=19% Similarity=0.222 Sum_probs=122.6
Q ss_pred EEEeecCCcccccCccccCCCCCCeeeecCCcCCccCC-ccccCccccccccccccccCCCCCCCCcCCCcCcEEecccc
Q 047768 74 KLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIP-DRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRN 152 (1009)
Q Consensus 74 ~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n 152 (1009)
.++++++.++. +|..+. ..+++|+|++|+|++..| ..|.++++|++|+|++|+|++..|..|+++++|++|++++|
T Consensus 15 ~l~~s~n~l~~-iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 15 TVDCSNQKLNK-IPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp EEECCSSCCSS-CCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EeEeCCCCccc-CccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 35555666755 455553 456899999999997755 45899999999999999999888889999999999999999
Q ss_pred cccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCC
Q 047768 153 NLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGT 231 (1009)
Q Consensus 153 ~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 231 (1009)
++++..|..+ ..+.+|++|+|++|+|++..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|.+...
T Consensus 92 ~l~~~~~~~~--~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c~ 168 (220)
T 2v70_A 92 RLENVQHKMF--KGLESLKTLMLRSNRITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNCN 168 (220)
T ss_dssp CCCCCCGGGG--TTCSSCCEEECTTSCCCCBCTTSSTTCTTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEECS
T ss_pred ccCccCHhHh--cCCcCCCEEECCCCcCCeECHhHcCCCccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcCC
Confidence 8886655544 5678888888888888877788888888888888888888877788888888888888888887643
No 360
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.79 E-value=1.2e-19 Score=204.14 Aligned_cols=179 Identities=21% Similarity=0.185 Sum_probs=100.1
Q ss_pred EEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcC-CcccccceecccccccCCCCcccccccccccccccCc
Q 047768 372 DFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIG-ELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGAN 450 (1009)
Q Consensus 372 ~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 450 (1009)
.+++++|.++ .+|..+. ..++.|+|++|+|++..+..|. ++++|++|+|++|+|++..|..|.++++|++|+|++|
T Consensus 22 ~l~c~~~~l~-~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 22 ILSCSKQQLP-NVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp EEECCSSCCS-SCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred EEEeCCCCcC-ccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 4566666665 3444333 2355556666655555555554 5555555555555555444445555555555555555
Q ss_pred ccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCcc
Q 047768 451 NLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIP 530 (1009)
Q Consensus 451 ~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p 530 (1009)
+|++..+ ..|.++++|++|+|++|+|++..|
T Consensus 99 ~l~~~~~-------------------------------------------------~~~~~l~~L~~L~L~~N~i~~~~~ 129 (361)
T 2xot_A 99 HLHTLDE-------------------------------------------------FLFSDLQALEVLLLYNNHIVVVDR 129 (361)
T ss_dssp CCCEECT-------------------------------------------------TTTTTCTTCCEEECCSSCCCEECT
T ss_pred cCCcCCH-------------------------------------------------HHhCCCcCCCEEECCCCcccEECH
Confidence 5543333 334555566666666666665555
Q ss_pred ccccCCCCccEEEecCccccccccccc---ccccccceEcCCCcccccccccccccccc--cCceecccccCcccCC
Q 047768 531 VTLGACTSLEYVELQGNSFSGTIPQSL---SSLTSIKELDLSQNNFSGQIPKYLENLSF--LQYLNLSYNHFEGEVP 602 (1009)
Q Consensus 531 ~~~~~l~~L~~L~L~~N~l~~~~p~~~---~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~--L~~L~ls~N~l~g~~p 602 (1009)
..|..+++|+.|+|++|+|++..+..| ..+++|+.|||++|+|++..+..+..++. |+.|+|++|++.+.+.
T Consensus 130 ~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~C~C~ 206 (361)
T 2xot_A 130 NAFEDMAQLQKLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLECDCK 206 (361)
T ss_dssp TTTTTCTTCCEEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEECCHH
T ss_pred HHhCCcccCCEEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCccCCcC
Confidence 666666666666666666664333334 45666666666666666544455666655 3667777777665543
No 361
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.79 E-value=3.8e-19 Score=185.97 Aligned_cols=156 Identities=21% Similarity=0.248 Sum_probs=119.9
Q ss_pred CCCCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCC
Q 047768 56 LCQHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIP 135 (1009)
Q Consensus 56 ~c~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p 135 (1009)
.| +|++|.|+.. ++ +.+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++..+
T Consensus 18 ~C-s~~~v~c~~~------------~l-~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~ 81 (229)
T 3e6j_A 18 SC-SGTTVDCRSK------------RH-ASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPV 81 (229)
T ss_dssp EE-ETTEEECTTS------------CC-SSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCT
T ss_pred EE-eCCEeEccCC------------Cc-CccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcCh
Confidence 35 8999999753 22 23444343 889999999999998889999999999999999999986666
Q ss_pred CCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccc
Q 047768 136 TNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQL 215 (1009)
Q Consensus 136 ~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 215 (1009)
..|.++++|++|+|++|++++..+..+ ..+.+|++|+|++|+|+ .+|..+..+++|++|+|++|+|++..+..|..+
T Consensus 82 ~~~~~l~~L~~L~Ls~N~l~~l~~~~~--~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l 158 (229)
T 3e6j_A 82 GVFDSLTQLTVLDLGTNQLTVLPSAVF--DRLVHLKELFMCCNKLT-ELPRGIERLTHLTHLALDQNQLKSIPHGAFDRL 158 (229)
T ss_dssp TTTTTCTTCCEEECCSSCCCCCCTTTT--TTCTTCCEEECCSSCCC-SCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTC
T ss_pred hhcccCCCcCEEECCCCcCCccChhHh--CcchhhCeEeccCCccc-ccCcccccCCCCCEEECCCCcCCccCHHHHhCC
Confidence 778889999988888888874444333 45777777777777777 667777777777777777777776666677777
Q ss_pred cccccccccCccCCC
Q 047768 216 TSLAYLHVGDNHFSG 230 (1009)
Q Consensus 216 ~~L~~L~L~~N~l~~ 230 (1009)
++|++|+|++|.+..
T Consensus 159 ~~L~~L~l~~N~~~c 173 (229)
T 3e6j_A 159 SSLTHAYLFGNPWDC 173 (229)
T ss_dssp TTCCEEECTTSCBCT
T ss_pred CCCCEEEeeCCCccC
Confidence 777777777777763
No 362
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=3.9e-19 Score=193.18 Aligned_cols=171 Identities=26% Similarity=0.358 Sum_probs=99.6
Q ss_pred CcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCcccc
Q 047768 390 NLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFF 469 (1009)
Q Consensus 390 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l 469 (1009)
.+++|+.|++++|.+++. + .+..+++|++|+|++|++++..+ +.++++|++|++++|++++ +| .+..+++|++|
T Consensus 44 ~l~~L~~L~l~~~~i~~~-~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~-~l~~l~~L~~L 117 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LS-SLKDLKKLKSL 117 (291)
T ss_dssp HHHTCCEEECTTSCCCCC-T-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GG-GGTTCTTCCEE
T ss_pred hcCcccEEEccCCCcccC-h-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Ch-hhccCCCCCEE
Confidence 344445555555554422 2 24445555555555555543322 4455555555555555543 22 24444444443
Q ss_pred ccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccc
Q 047768 470 FAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSF 549 (1009)
Q Consensus 470 ~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l 549 (1009)
++++|+++ + + ..+..+++|+.|++++|++++. ..++.+++|+.|+|++|++
T Consensus 118 ~L~~n~i~-------------------------~-~-~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l 168 (291)
T 1h6t_A 118 SLEHNGIS-------------------------D-I-NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQI 168 (291)
T ss_dssp ECTTSCCC-------------------------C-C-GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCC
T ss_pred ECCCCcCC-------------------------C-C-hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcc
Confidence 33333332 2 1 2355667777777777777754 5677777777888887777
Q ss_pred ccccccccccccccceEcCCCcccccccccccccccccCceecccccCcc
Q 047768 550 SGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEG 599 (1009)
Q Consensus 550 ~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g 599 (1009)
++..| ++.+++|+.|+|++|+|++ +| .+..+++|+.|++++|+++.
T Consensus 169 ~~~~~--l~~l~~L~~L~L~~N~i~~-l~-~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 169 SDIVP--LAGLTKLQNLYLSKNHISD-LR-ALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp CCCGG--GTTCTTCCEEECCSSCCCB-CG-GGTTCTTCSEEEEEEEEEEC
T ss_pred ccchh--hcCCCccCEEECCCCcCCC-Ch-hhccCCCCCEEECcCCcccC
Confidence 75544 7777788888888887774 44 37777888888888887765
No 363
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.78 E-value=2.6e-21 Score=229.12 Aligned_cols=192 Identities=20% Similarity=0.199 Sum_probs=157.1
Q ss_pred cCcCccCEEEccCCCCCCCCCCCcCCcccccceeccccc-------------ccCCCCccccccccccccc-ccCccccc
Q 047768 389 ANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANF-------------LQGTIPSSLGNLTLLTYLS-FGANNLQG 454 (1009)
Q Consensus 389 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~-------------l~~~~p~~~~~l~~L~~L~-L~~N~l~~ 454 (1009)
..+++|+.|+|++|+|+ .+|..++.+++|+.|++++|. +.+.+|..++++++|+.|+ ++.|.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~-~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKST-VLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHH-HHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH-
T ss_pred ccCccceeccCChhhHH-hhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc-
Confidence 45677777888888876 667777788888888876665 4566777778888888887 6666553
Q ss_pred ccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCcccccc
Q 047768 455 NIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLG 534 (1009)
Q Consensus 455 ~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~ 534 (1009)
+|..+++.+|.+++ +|.. ....|+|++|.|++ +|. |+++++|+.|+|++|+|+ .+|..++
T Consensus 424 ----------~L~~l~l~~n~i~~-l~~~------~L~~L~Ls~n~l~~-lp~-~~~l~~L~~L~Ls~N~l~-~lp~~~~ 483 (567)
T 1dce_A 424 ----------DLRSKFLLENSVLK-MEYA------DVRVLHLAHKDLTV-LCH-LEQLLLVTHLDLSHNRLR-ALPPALA 483 (567)
T ss_dssp ----------HHHHHHHHHHHHHH-HHHT------TCSEEECTTSCCSS-CCC-GGGGTTCCEEECCSSCCC-CCCGGGG
T ss_pred ----------hhhhhhhhcccccc-cCcc------CceEEEecCCCCCC-CcC-ccccccCcEeecCccccc-ccchhhh
Confidence 45566666676653 2211 12359999999996 676 999999999999999999 8899999
Q ss_pred CCCCccEEEecCcccccccccccccccccceEcCCCccccccc-ccccccccccCceecccccCcccCCCC
Q 047768 535 ACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQI-PKYLENLSFLQYLNLSYNHFEGEVPTK 604 (1009)
Q Consensus 535 ~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~-p~~~~~l~~L~~L~ls~N~l~g~~p~~ 604 (1009)
.+++|+.|+|++|+|++ +| .|+++++|+.|+|++|+|++.+ |..+..+++|++|+|++|++++.+|..
T Consensus 484 ~l~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~l~~l~~L~~L~L~~N~l~~~~~~~ 552 (567)
T 1dce_A 484 ALRCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQPLVSCPRLVLLNLQGNSLCQEEGIQ 552 (567)
T ss_dssp GCTTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGGGGGCTTCCEEECTTSGGGGSSSCT
T ss_pred cCCCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHHHhcCCCCCEEEecCCcCCCCccHH
Confidence 99999999999999996 67 8999999999999999999887 999999999999999999999988754
No 364
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.78 E-value=1.2e-19 Score=197.30 Aligned_cols=176 Identities=22% Similarity=0.295 Sum_probs=89.9
Q ss_pred cCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCc
Q 047768 91 GNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNL 170 (1009)
Q Consensus 91 ~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L 170 (1009)
..+++|++|++++|.++ .+| .+..+++|++|+|++|++++..| ++++++|++|++++|.+++ +|. + ..+.+|
T Consensus 43 ~~l~~L~~L~l~~~~i~-~~~-~~~~l~~L~~L~L~~n~l~~~~~--l~~l~~L~~L~l~~n~l~~-~~~-l--~~l~~L 114 (291)
T 1h6t_A 43 NELNSIDQIIANNSDIK-SVQ-GIQYLPNVTKLFLNGNKLTDIKP--LANLKNLGWLFLDENKVKD-LSS-L--KDLKKL 114 (291)
T ss_dssp HHHHTCCEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCC-GGG-G--TTCTTC
T ss_pred hhcCcccEEEccCCCcc-cCh-hHhcCCCCCEEEccCCccCCCcc--cccCCCCCEEECCCCcCCC-Chh-h--ccCCCC
Confidence 34555666666666665 333 25566666666666666654333 5555555555555555543 221 1 334444
Q ss_pred CeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCC
Q 047768 171 QGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGN 250 (1009)
Q Consensus 171 ~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N 250 (1009)
++|+|++|++++. ..+..+++|++|++++|++++. ..+..+++|++|+|++|++++
T Consensus 115 ~~L~L~~n~i~~~--~~l~~l~~L~~L~l~~n~l~~~--~~l~~l~~L~~L~L~~N~l~~-------------------- 170 (291)
T 1h6t_A 115 KSLSLEHNGISDI--NGLVHLPQLESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD-------------------- 170 (291)
T ss_dssp CEEECTTSCCCCC--GGGGGCTTCCEEECCSSCCCCC--GGGGGCTTCSEEECCSSCCCC--------------------
T ss_pred CEEECCCCcCCCC--hhhcCCCCCCEEEccCCcCCcc--hhhccCCCCCEEEccCCcccc--------------------
Confidence 5555555544432 2344445555555555554432 334444444444444444442
Q ss_pred ccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccccccc
Q 047768 251 RFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSI 307 (1009)
Q Consensus 251 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~ 307 (1009)
++. +..+++|+.|+|++|.+++. + .+..+++|+.|++++|++......
T Consensus 171 -----~~~--l~~l~~L~~L~L~~N~i~~l-~-~l~~l~~L~~L~l~~n~i~~~~~~ 218 (291)
T 1h6t_A 171 -----IVP--LAGLTKLQNLYLSKNHISDL-R-ALAGLKNLDVLELFSQECLNKPIN 218 (291)
T ss_dssp -----CGG--GTTCTTCCEEECCSSCCCBC-G-GGTTCTTCSEEEEEEEEEECCCEE
T ss_pred -----chh--hcCCCccCEEECCCCcCCCC-h-hhccCCCCCEEECcCCcccCCccc
Confidence 222 33455555666666655543 2 356666666666666666654433
No 365
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.78 E-value=1e-18 Score=208.03 Aligned_cols=192 Identities=22% Similarity=0.332 Sum_probs=126.9
Q ss_pred ChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccccccccccccccccccccc
Q 047768 240 SSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLG 319 (1009)
Q Consensus 240 ~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~ 319 (1009)
..+..+.+..+.+.+.++. ..+++|+.|++++|.+... | .|..+++|+.|+|++|+++++.+ |..+++|+.|+
T Consensus 21 ~~l~~l~l~~~~i~~~~~~---~~L~~L~~L~l~~n~i~~l-~-~l~~l~~L~~L~Ls~N~l~~~~~--l~~l~~L~~L~ 93 (605)
T 1m9s_A 21 AETIKDNLKKKSVTDAVTQ---NELNSIDQIIANNSDIKSV-Q-GIQYLPNVTKLFLNGNKLTDIKP--LTNLKNLGWLF 93 (605)
T ss_dssp HHHHHHHTTCSCTTSEECH---HHHTTCCCCBCTTCCCCCC-T-TGGGCTTCCEEECTTSCCCCCGG--GGGCTTCCEEE
T ss_pred HHHHHHhccCCCcccccch---hcCCCCCEEECcCCCCCCC-h-HHccCCCCCEEEeeCCCCCCChh--hccCCCCCEEE
Confidence 3455555555555532222 2356666666666666643 2 46666777777777777666554 66666666666
Q ss_pred ccccccCCCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEc
Q 047768 320 LATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRM 399 (1009)
Q Consensus 320 L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 399 (1009)
|++|.+...+ .+..+++|+.|+|++|.+++. ..+..+ ..|+.|+|++|+|++. ..+..+++|+.|+|
T Consensus 94 Ls~N~l~~l~--------~l~~l~~L~~L~Ls~N~l~~l--~~l~~l-~~L~~L~Ls~N~l~~l--~~l~~l~~L~~L~L 160 (605)
T 1m9s_A 94 LDENKIKDLS--------SLKDLKKLKSLSLEHNGISDI--NGLVHL-PQLESLYLGNNKITDI--TVLSRLTKLDTLSL 160 (605)
T ss_dssp CCSSCCCCCT--------TSTTCTTCCEEECTTSCCCCC--GGGGGC-TTCSEEECCSSCCCCC--GGGGSCTTCSEEEC
T ss_pred CcCCCCCCCh--------hhccCCCCCEEEecCCCCCCC--ccccCC-CccCEEECCCCccCCc--hhhcccCCCCEEEC
Confidence 6666665432 356677777777777777753 335555 4677777777777754 56777788888888
Q ss_pred cCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccc
Q 047768 400 EANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGN 455 (1009)
Q Consensus 400 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 455 (1009)
++|+|++..| +..+++|+.|+|++|+|++. +.+..+++|+.|+|++|++.+.
T Consensus 161 s~N~l~~~~~--l~~l~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 161 EDNQISDIVP--LAGLTKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp CSSCCCCCGG--GTTCTTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred cCCcCCCchh--hccCCCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 8888876655 77788888888888888753 3577778888888888887753
No 366
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.77 E-value=1.4e-18 Score=181.62 Aligned_cols=156 Identities=23% Similarity=0.263 Sum_probs=105.2
Q ss_pred cCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCC
Q 047768 394 LNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPR 473 (1009)
Q Consensus 394 L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 473 (1009)
.+.+++++++++ .+|..+. ++|++|+|++|++++..|..|.++++|++|+|++|+|++
T Consensus 21 ~~~v~c~~~~l~-~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~------------------- 78 (229)
T 3e6j_A 21 GTTVDCRSKRHA-SVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGA------------------- 78 (229)
T ss_dssp TTEEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCC-------------------
T ss_pred CCEeEccCCCcC-ccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCC-------------------
Confidence 455666666666 4444332 556666666666665555555555555555555555542
Q ss_pred CCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccccc
Q 047768 474 NKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTI 553 (1009)
Q Consensus 474 N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 553 (1009)
..+..|..+++|++|+|++|+|++..+..|..+++|+.|+|++|+|+ .+
T Consensus 79 ------------------------------i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~~L~~L~Ls~N~l~-~l 127 (229)
T 3e6j_A 79 ------------------------------LPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLVHLKELFMCCNKLT-EL 127 (229)
T ss_dssp ------------------------------CCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCC-SC
T ss_pred ------------------------------cChhhcccCCCcCEEECCCCcCCccChhHhCcchhhCeEeccCCccc-cc
Confidence 22233556677777777777777666666777778888888888877 67
Q ss_pred ccccccccccceEcCCCcccccccccccccccccCceecccccCcccCC
Q 047768 554 PQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVP 602 (1009)
Q Consensus 554 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p 602 (1009)
|..+..+++|++|+|++|+|++..+..|..+++|++|+|++|++.|.++
T Consensus 128 p~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c~c~ 176 (229)
T 3e6j_A 128 PRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFGNPWDCECR 176 (229)
T ss_dssp CTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTTSCBCTTBG
T ss_pred CcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCCccCCcc
Confidence 7777788888888888888876666677778888888888888877766
No 367
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.77 E-value=7.3e-19 Score=197.59 Aligned_cols=177 Identities=20% Similarity=0.185 Sum_probs=131.8
Q ss_pred cceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCcccc-CcCccCEEEccCCCCCCCCCCCcCCcccccceec
Q 047768 345 LQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIA-NLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHL 423 (1009)
Q Consensus 345 L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~-~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 423 (1009)
-+.+++++|+++. +|..+. ..++.|+|++|+|++..+..|. ++++|+.|+|++|+|++..+..|..+++|++|+|
T Consensus 20 ~~~l~c~~~~l~~-iP~~~~---~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~L 95 (361)
T 2xot_A 20 SNILSCSKQQLPN-VPQSLP---SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDL 95 (361)
T ss_dssp TTEEECCSSCCSS-CCSSCC---TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEEC
T ss_pred CCEEEeCCCCcCc-cCccCC---CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEEC
Confidence 3689999999984 666554 4589999999999998888888 9999999999999999888899999999999999
Q ss_pred ccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCC
Q 047768 424 HANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNG 503 (1009)
Q Consensus 424 ~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~ 503 (1009)
++|+|++..+..|.++++|++|+|++|+|++..|..|.++++|+
T Consensus 96 s~N~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~------------------------------------ 139 (361)
T 2xot_A 96 SSNHLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQ------------------------------------ 139 (361)
T ss_dssp CSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCC------------------------------------
T ss_pred CCCcCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCC------------------------------------
Confidence 99999988888899999999999999998866565555555544
Q ss_pred CCCCCccCCCCCCeeeccccccCCCccccc---cCCCCccEEEecCcccccccccccccccc--cceEcCCCcccc
Q 047768 504 SLPLGVGNLKSLVRLGIARNQFSGQIPVTL---GACTSLEYVELQGNSFSGTIPQSLSSLTS--IKELDLSQNNFS 574 (1009)
Q Consensus 504 ~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~~p~~~~~l~~--L~~L~Ls~N~l~ 574 (1009)
.|+|++|+|++..+..| ..+++|+.|+|++|+|++..+..+..++. |+.|+|++|.+.
T Consensus 140 -------------~L~L~~N~l~~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~l~~~~l~~l~l~~N~~~ 202 (361)
T 2xot_A 140 -------------KLYLSQNQISRFPVELIKDGNKLPKLMLLDLSSNKLKKLPLTDLQKLPAWVKNGLYLHNNPLE 202 (361)
T ss_dssp -------------EEECCSSCCCSCCGGGTC----CTTCCEEECCSSCCCCCCHHHHHHSCHHHHTTEECCSSCEE
T ss_pred -------------EEECCCCcCCeeCHHHhcCcccCCcCCEEECCCCCCCccCHHHhhhccHhhcceEEecCCCcc
Confidence 44444444443222222 34555666666666665444455555554 366666666665
No 368
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.76 E-value=9.5e-20 Score=222.70 Aligned_cols=91 Identities=23% Similarity=0.300 Sum_probs=47.1
Q ss_pred EcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccc
Q 047768 374 NLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQ 453 (1009)
Q Consensus 374 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 453 (1009)
++..|.+. ..|..|..+++|+.|+|++|++. .+|..+..+++|++|+|++|.|+ .+|..|+++++|++|+|++|+|+
T Consensus 207 ~~~~n~~~-~~~~~~~~l~~L~~L~Ls~n~l~-~l~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~ 283 (727)
T 4b8c_D 207 DDIENRMV-MPKDSKYDDQLWHALDLSNLQIF-NISANIFKYDFLTRLYLNGNSLT-ELPAEIKNLSNLRVLDLSHNRLT 283 (727)
T ss_dssp ----------------CCCCCCEEECTTSCCS-CCCGGGGGCCSCSCCBCTTSCCS-CCCGGGGGGTTCCEEECTTSCCS
T ss_pred ccccccee-cChhhhccCCCCcEEECCCCCCC-CCChhhcCCCCCCEEEeeCCcCc-ccChhhhCCCCCCEEeCcCCcCC
Confidence 34444444 45566666666777777777666 55555556666666666666666 56666666666666666666665
Q ss_pred cccCCCCCCCCCccc
Q 047768 454 GNIPFSLGNCKNLMF 468 (1009)
Q Consensus 454 ~~~p~~~~~l~~L~~ 468 (1009)
.+|..|+++++|++
T Consensus 284 -~lp~~~~~l~~L~~ 297 (727)
T 4b8c_D 284 -SLPAELGSCFQLKY 297 (727)
T ss_dssp -SCCSSGGGGTTCSE
T ss_pred -ccChhhcCCCCCCE
Confidence 44555544444443
No 369
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.76 E-value=1.6e-18 Score=206.31 Aligned_cols=107 Identities=26% Similarity=0.361 Sum_probs=51.0
Q ss_pred cccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccc
Q 047768 339 LTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNL 418 (1009)
Q Consensus 339 l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 418 (1009)
+..+++|+.|+|++|++++..| +..+ ..|+.|+|++|+|++ + +.+..+++|+.|+|++|+|++. ..+..+++|
T Consensus 61 l~~l~~L~~L~Ls~N~l~~~~~--l~~l-~~L~~L~Ls~N~l~~-l-~~l~~l~~L~~L~Ls~N~l~~l--~~l~~l~~L 133 (605)
T 1m9s_A 61 IQYLPNVTKLFLNGNKLTDIKP--LTNL-KNLGWLFLDENKIKD-L-SSLKDLKKLKSLSLEHNGISDI--NGLVHLPQL 133 (605)
T ss_dssp GGGCTTCCEEECTTSCCCCCGG--GGGC-TTCCEEECCSSCCCC-C-TTSTTCTTCCEEECTTSCCCCC--GGGGGCTTC
T ss_pred HccCCCCCEEEeeCCCCCCChh--hccC-CCCCEEECcCCCCCC-C-hhhccCCCCCEEEecCCCCCCC--ccccCCCcc
Confidence 4445566666666665554332 3333 344444444444442 1 1344555555555555555432 234445555
Q ss_pred cceecccccccCCCCcccccccccccccccCccccc
Q 047768 419 QLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQG 454 (1009)
Q Consensus 419 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 454 (1009)
+.|+|++|++++. ..+..+++|+.|+|++|+|++
T Consensus 134 ~~L~Ls~N~l~~l--~~l~~l~~L~~L~Ls~N~l~~ 167 (605)
T 1m9s_A 134 ESLYLGNNKITDI--TVLSRLTKLDTLSLEDNQISD 167 (605)
T ss_dssp SEEECCSSCCCCC--GGGGSCTTCSEEECCSSCCCC
T ss_pred CEEECCCCccCCc--hhhcccCCCCEEECcCCcCCC
Confidence 5555555555432 334444444444444444443
No 370
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.74 E-value=1.7e-18 Score=175.72 Aligned_cols=135 Identities=27% Similarity=0.335 Sum_probs=101.2
Q ss_pred EecCCCccCCCCCC-CccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcc
Q 047768 494 LDLSDNLLNGSLPL-GVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNN 572 (1009)
Q Consensus 494 L~Ls~N~l~~~~p~-~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 572 (1009)
|++++|++++..+. .|+.+++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|+++++|++|+|++|+
T Consensus 34 L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 113 (192)
T 1w8a_A 34 LLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQ 113 (192)
T ss_dssp EECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSC
T ss_pred EECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCc
Confidence 56666666554443 37778888888888888888778888888888888888888888888888888888888888888
Q ss_pred cccccccccccccccCceecccccCcccCCCCCcccCccccccccCCCcCCCCCCC
Q 047768 573 FSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGIFKNKTGFSIVGNGKLCGGLDEL 628 (1009)
Q Consensus 573 l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~~ 628 (1009)
|++.+|..|..+++|++|+|++|+++|.++..+....+....+.++...|+.|...
T Consensus 114 l~~~~~~~~~~l~~L~~L~L~~N~l~c~c~l~~~~~~l~~~~~~~~~~~C~~P~~l 169 (192)
T 1w8a_A 114 ISCVMPGSFEHLNSLTSLNLASNPFNCNCHLAWFAEWLRKKSLNGGAARCGAPSKV 169 (192)
T ss_dssp CCEECTTSSTTCTTCCEEECTTCCBCCSGGGHHHHHHHHHHCCSGGGCBBCSSTTT
T ss_pred CCeeCHHHhhcCCCCCEEEeCCCCccCcCcchHHHHHHHHcCCCCCCCCCCCChHH
Confidence 88888888888888888888888888887754322222223445566677766654
No 371
>1zth_A RIO1 serine protein kinase; ribosome biogenesis, rRNA, ADP, manganese, transferase; HET: ADP; 1.89A {Archaeoglobus fulgidus} PDB: 1zp9_A* 1ztf_A*
Probab=99.74 E-value=3e-18 Score=182.54 Aligned_cols=139 Identities=22% Similarity=0.176 Sum_probs=108.3
Q ss_pred ccCccCCcccccCCceEEEEEEecCCeE--EEEEEeeccccc------------------------chHHHHHHHHHHHh
Q 047768 701 NEFSSSNTIGRGSFGFVYKGVLHENGML--VAVKVINLEQKG------------------------GSKSFAAECEALRS 754 (1009)
Q Consensus 701 ~~~~~~~~lg~G~~g~V~~~~~~~~~~~--vavK~~~~~~~~------------------------~~~~~~~E~~~l~~ 754 (1009)
.-|.+.+.||+|+||.||+|.+..+|+. ||||+++..... ....+.+|++.+++
T Consensus 47 ~~~~i~~~ig~G~~g~Vy~a~~~~~g~~~~vAvK~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~~l~~ 126 (258)
T 1zth_A 47 YITAMGGVISTGKEANVFYADGVFDGKPVAMAVKIYRIETSEFDKMDEYLYGDERFDMRRISPKEKVFIWTEKEFRNLER 126 (258)
T ss_dssp SEEEEEEEEEECSSEEEEEEEEEETTEEEEEEEEEECCC-------GGGTTTCTTSCC----CHHHHHHHHHHHHHHHHH
T ss_pred CchhhCCEEeecceEEEEEEEEcCCCcEeeEEEEEEECCccchhhHHHhhcccchhhhhccChHHHHHHHHHHHHHHHHH
Confidence 3466788999999999999999778999 999997533111 01368899999999
Q ss_pred cCCCCc--ceEEeeeeccccCCCceEEEEEeccCC-C----CHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHh-
Q 047768 755 IRHRNL--IKIVTICSSIDFKGVDFKALVYEYMQN-G----SLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLH- 826 (1009)
Q Consensus 755 l~h~ni--v~l~~~~~~~~~~~~~~~~lv~e~~~~-g----sL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH- 826 (1009)
+.|+++ ..++++ ...++||||+.+ | +|.++... .++.++..++.|++.|+.|||
T Consensus 127 l~~~~i~~p~~~~~---------~~~~lVmE~~g~~g~~~~~L~~~~~~---------~~~~~~~~i~~qi~~~l~~lH~ 188 (258)
T 1zth_A 127 AKEAGVSVPQPYTY---------MKNVLLMEFIGEDELPAPTLVELGRE---------LKELDVEGIFNDVVENVKRLYQ 188 (258)
T ss_dssp HHHTTCCCCCEEEE---------ETTEEEEECCEETTEECCBHHHHGGG---------GGGSCHHHHHHHHHHHHHHHHH
T ss_pred HHhCCCCCCeEEEc---------CCCEEEEEecCCCCCccccHHHHhhc---------cChHHHHHHHHHHHHHHHHHHH
Confidence 988764 344432 345899999942 4 77776543 123456789999999999999
Q ss_pred hcCCCCceecCCCCCceeeCCCCceEEecccccccc
Q 047768 827 HHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFL 862 (1009)
Q Consensus 827 ~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~ 862 (1009)
+. +||||||||+|||++. .++|+|||+|...
T Consensus 189 ~~---givHrDlkp~NILl~~--~~~liDFG~a~~~ 219 (258)
T 1zth_A 189 EA---ELVHADLSEYNIMYID--KVYFIDMGQAVTL 219 (258)
T ss_dssp TS---CEECSSCSTTSEEESS--SEEECCCTTCEET
T ss_pred HC---CEEeCCCCHHHEEEcC--cEEEEECcccccC
Confidence 88 9999999999999998 9999999999754
No 372
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=1.3e-18 Score=185.82 Aligned_cols=168 Identities=23% Similarity=0.321 Sum_probs=102.1
Q ss_pred cceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCccccccccccccccc
Q 047768 369 ALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFG 448 (1009)
Q Consensus 369 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 448 (1009)
.+..+++++|.+++.. .+..+++|+.|++++|+++. +| .+..+++|++|+|++|++++..+ +.++++|++|+++
T Consensus 20 ~l~~l~l~~~~i~~~~--~~~~l~~L~~L~l~~n~i~~-l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L~L~ 93 (263)
T 1xeu_A 20 NAVKQNLGKQSVTDLV--SQKELSGVQNFNGDNSNIQS-LA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEELSVN 93 (263)
T ss_dssp HHHHHHHTCSCTTSEE--CHHHHTTCSEEECTTSCCCC-CT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEEECC
T ss_pred HHHHHHhcCCCccccc--chhhcCcCcEEECcCCCccc-ch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEEECC
Confidence 3455666666666332 46666667777777776663 33 46666666666666666664333 5566666666666
Q ss_pred CcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCC
Q 047768 449 ANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQ 528 (1009)
Q Consensus 449 ~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~ 528 (1009)
+|++++ +|. +.. ++|++|++++|++++
T Consensus 94 ~N~l~~-l~~--------------------------------------------------~~~-~~L~~L~L~~N~l~~- 120 (263)
T 1xeu_A 94 RNRLKN-LNG--------------------------------------------------IPS-ACLSRLFLDNNELRD- 120 (263)
T ss_dssp SSCCSC-CTT--------------------------------------------------CCC-SSCCEEECCSSCCSB-
T ss_pred CCccCC-cCc--------------------------------------------------ccc-CcccEEEccCCccCC-
Confidence 665553 221 111 456666666666664
Q ss_pred ccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccCceecccccCccc
Q 047768 529 IPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGE 600 (1009)
Q Consensus 529 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~ 600 (1009)
+| .+..+++|+.|+|++|++++. | .++.+++|++|+|++|++++. ..+..+++|++|++++|++++.
T Consensus 121 ~~-~l~~l~~L~~L~Ls~N~i~~~-~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 121 TD-SLIHLKNLEILSIRNNKLKSI-V-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp SG-GGTTCTTCCEEECTTSCCCBC-G-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred Ch-hhcCcccccEEECCCCcCCCC-h-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 22 466666777777777776643 3 566677777777777777654 5566677777777777776654
No 373
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.73 E-value=4.1e-18 Score=182.04 Aligned_cols=170 Identities=22% Similarity=0.323 Sum_probs=102.4
Q ss_pred ccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccce
Q 047768 342 CTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLL 421 (1009)
Q Consensus 342 l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 421 (1009)
+.++..+++++|.+++.. .+..+ ..|+.|++++|.++ .+| .+..+++|+.|+|++|+|++..+ +..+++|++|
T Consensus 18 l~~l~~l~l~~~~i~~~~--~~~~l-~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~L~~N~i~~~~~--l~~l~~L~~L 90 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV--SQKEL-SGVQNFNGDNSNIQ-SLA-GMQFFTNLKELHLSHNQISDLSP--LKDLTKLEEL 90 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE--CHHHH-TTCSEEECTTSCCC-CCT-TGGGCTTCCEEECCSSCCCCCGG--GTTCSSCCEE
T ss_pred HHHHHHHHhcCCCccccc--chhhc-CcCcEEECcCCCcc-cch-HHhhCCCCCEEECCCCccCCChh--hccCCCCCEE
Confidence 344555556666655332 34444 45666666666666 334 67778888888888888886554 7888888888
Q ss_pred ecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCcc
Q 047768 422 HLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLL 501 (1009)
Q Consensus 422 ~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l 501 (1009)
+|++|++++ +|.. .. ++|++|++++|++++. | .+..+++|+.|++++|+++
T Consensus 91 ~L~~N~l~~-l~~~-~~-~~L~~L~L~~N~l~~~-~-~l~~l~~L~~L~Ls~N~i~------------------------ 141 (263)
T 1xeu_A 91 SVNRNRLKN-LNGI-PS-ACLSRLFLDNNELRDT-D-SLIHLKNLEILSIRNNKLK------------------------ 141 (263)
T ss_dssp ECCSSCCSC-CTTC-CC-SSCCEEECCSSCCSBS-G-GGTTCTTCCEEECTTSCCC------------------------
T ss_pred ECCCCccCC-cCcc-cc-CcccEEEccCCccCCC-h-hhcCcccccEEECCCCcCC------------------------
Confidence 888888875 3332 22 7777777777777642 2 3455555444333333332
Q ss_pred CCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccc
Q 047768 502 NGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGT 552 (1009)
Q Consensus 502 ~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 552 (1009)
+ +| .++.+++|++|++++|++++. ..+..+++|+.|+|++|++++.
T Consensus 142 -~-~~-~l~~l~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 142 -S-IV-MLGFLSKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -B-CG-GGGGCTTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -C-Ch-HHccCCCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 2 12 345556666666666666644 4556666666666666666543
No 374
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.73 E-value=1.4e-18 Score=192.87 Aligned_cols=265 Identities=13% Similarity=0.098 Sum_probs=179.2
Q ss_pred ccccceeecccCccc--CCCCcccccccccccccccCccCCCCCCCcccC--------CChHHHHHhhCCccCCCCChhh
Q 047768 191 LSALRVIDIRTNRLW--GKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYN--------ISSLVEIYLYGNRFTGSLPIEI 260 (1009)
Q Consensus 191 l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~--------l~~L~~L~L~~N~l~~~ip~~~ 260 (1009)
+++|++|||++|++. ...+..+. .++.+.+..|.|. +..|.+ +++|++|+|.+ .++ .|+..+
T Consensus 48 l~~L~~LdLs~n~i~~~~~~~~~~~---~~~~~~~~~~~I~---~~aF~~~~~~~~~g~~~L~~l~L~~-~i~-~I~~~a 119 (329)
T 3sb4_A 48 FPSLKVLDISNAEIKMYSGKAGTYP---NGKFYIYMANFVP---AYAFSNVVNGVTKGKQTLEKVILSE-KIK-NIEDAA 119 (329)
T ss_dssp CTTCCEEEEEEEEECCEEESSSSSG---GGCCEEECTTEEC---TTTTEEEETTEEEECTTCCC-CBCT-TCC-EECTTT
T ss_pred hccCeEEecCcceeEEecCcccccc---ccccccccccccC---HHHhcccccccccccCCCcEEECCc-ccc-chhHHH
Confidence 566777777777765 22222222 2444444444332 344555 77777777777 676 777788
Q ss_pred ccCCCcccceeccccccCCCCCCCcCcccccccccccccc----cccccccccccccccc-cccccccccCCCCCCCcch
Q 047768 261 GKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQ----FRGQVSINFNGLKDLS-MLGLATNFLGNGAANDLDF 335 (1009)
Q Consensus 261 ~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~----l~~~~~~~f~~l~~L~-~L~L~~N~l~~~~~~~~~~ 335 (1009)
|.++++|+.|++++|.++.+.+.+|.++.++..+.+..+. ...+...+|.+...|+ .+.+.... .++. ..
T Consensus 120 F~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~~L~~~i~~~~~~--~l~~---~~ 194 (329)
T 3sb4_A 120 FKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGEPLETTIQVGAMG--KLED---EI 194 (329)
T ss_dssp TTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESCCCEEEEEECTTC--CHHH---HH
T ss_pred hhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccccccceeEEecCCC--cHHH---HH
Confidence 8888888888888888777777788887777777766532 2334445555555554 22222110 0000 00
Q ss_pred hhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCc
Q 047768 336 VDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGEL 415 (1009)
Q Consensus 336 ~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l 415 (1009)
...-....+++.+.+.++- .......+......|+.++|++|+++.+.+.+|.++++|+.|+|.+| ++.+.+.+|.++
T Consensus 195 ~~~~~~~~~~~~l~~~~~l-~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~~~L~~l~l~~n-i~~I~~~aF~~~ 272 (329)
T 3sb4_A 195 MKAGLQPRDINFLTIEGKL-DNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQKKYLLKIKLPHN-LKTIGQRVFSNC 272 (329)
T ss_dssp HHTTCCGGGCSEEEEEECC-CHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTC
T ss_pred hhcccCccccceEEEeeee-cHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCCCCCCEEECCcc-cceehHHHhhCC
Confidence 0011124566677766552 22222333333468999999999999787888999999999999998 887888899999
Q ss_pred cccc-ceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCcccccc
Q 047768 416 KNLQ-LLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFA 471 (1009)
Q Consensus 416 ~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l 471 (1009)
.+|+ .+++.+ .++.+.+..|.++++|+.+++++|+++...+..|.++++|+.++.
T Consensus 273 ~~L~~~l~l~~-~l~~I~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly~ 328 (329)
T 3sb4_A 273 GRLAGTLELPA-SVTAIEFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIYK 328 (329)
T ss_dssp TTCCEEEEECT-TCCEECTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEEC
T ss_pred hhccEEEEEcc-cceEEchhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhcc
Confidence 9999 999988 777677889999999999999999999777789999999988764
No 375
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.72 E-value=7.5e-18 Score=171.82 Aligned_cols=156 Identities=17% Similarity=0.214 Sum_probs=104.6
Q ss_pred cccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCc
Q 047768 387 GIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNL 466 (1009)
Q Consensus 387 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 466 (1009)
....+++|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..
T Consensus 39 ~~~~l~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~---------- 104 (197)
T 4ezg_A 39 TEAQMNSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDK---------- 104 (197)
T ss_dssp BHHHHHTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGG----------
T ss_pred ChhhcCCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCccc----------
Confidence 3466777888888888887 445 5777777777777777654 2235666666666666666655433
Q ss_pred cccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecC
Q 047768 467 MFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQG 546 (1009)
Q Consensus 467 ~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~ 546 (1009)
|..++.+++|++|++++|++++..|..++.+++|++|+|++
T Consensus 105 ---------------------------------------~~~l~~l~~L~~L~Ls~n~i~~~~~~~l~~l~~L~~L~L~~ 145 (197)
T 4ezg_A 105 ---------------------------------------IPNLSGLTSLTLLDISHSAHDDSILTKINTLPKVNSIDLSY 145 (197)
T ss_dssp ---------------------------------------SCCCTTCTTCCEEECCSSBCBGGGHHHHTTCSSCCEEECCS
T ss_pred ---------------------------------------ChhhcCCCCCCEEEecCCccCcHhHHHHhhCCCCCEEEccC
Confidence 34455566677777777777766677777777777777777
Q ss_pred cc-cccccccccccccccceEcCCCcccccccccccccccccCceecccccCcc
Q 047768 547 NS-FSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEG 599 (1009)
Q Consensus 547 N~-l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g 599 (1009)
|+ ++ .+| .++.+++|++|++++|++++ ++ .+..+++|++|++++|++.+
T Consensus 146 n~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~~ 195 (197)
T 4ezg_A 146 NGAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIGG 195 (197)
T ss_dssp CTBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC----
T ss_pred CCCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccCC
Confidence 76 44 444 57777778888888888774 44 67777888888888887653
No 376
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.71 E-value=1.3e-17 Score=169.98 Aligned_cols=153 Identities=17% Similarity=0.226 Sum_probs=108.6
Q ss_pred hhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccc
Q 047768 364 ANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLT 443 (1009)
Q Consensus 364 ~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~ 443 (1009)
..+ ..|+.|++++|.++ .+| .+..+++|++|++++|.++ .+..+..+++|++|++++|++++..|..+..+++|+
T Consensus 41 ~~l-~~L~~L~l~~n~i~-~l~-~l~~l~~L~~L~l~~n~~~--~~~~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~ 115 (197)
T 4ezg_A 41 AQM-NSLTYITLANINVT-DLT-GIEYAHNIKDLTINNIHAT--NYNPISGLSNLERLRIMGKDVTSDKIPNLSGLTSLT 115 (197)
T ss_dssp HHH-HTCCEEEEESSCCS-CCT-TGGGCTTCSEEEEESCCCS--CCGGGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCC
T ss_pred hhc-CCccEEeccCCCcc-ChH-HHhcCCCCCEEEccCCCCC--cchhhhcCCCCCEEEeECCccCcccChhhcCCCCCC
Confidence 444 57999999999999 556 7999999999999999776 345789999999999999999988889999999999
Q ss_pred cccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeecccc
Q 047768 444 YLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARN 523 (1009)
Q Consensus 444 ~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N 523 (1009)
+|++++|++++..|..+..+ ++|++|++++|
T Consensus 116 ~L~Ls~n~i~~~~~~~l~~l-------------------------------------------------~~L~~L~L~~n 146 (197)
T 4ezg_A 116 LLDISHSAHDDSILTKINTL-------------------------------------------------PKVNSIDLSYN 146 (197)
T ss_dssp EEECCSSBCBGGGHHHHTTC-------------------------------------------------SSCCEEECCSC
T ss_pred EEEecCCccCcHhHHHHhhC-------------------------------------------------CCCCEEEccCC
Confidence 99999988886555444444 44555555555
Q ss_pred c-cCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccc
Q 047768 524 Q-FSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFS 574 (1009)
Q Consensus 524 ~-l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 574 (1009)
. ++ .+| .+..+++|+.|++++|++++ ++ .+..+++|++|++++|++.
T Consensus 147 ~~i~-~~~-~l~~l~~L~~L~l~~n~i~~-~~-~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 147 GAIT-DIM-PLKTLPELKSLNIQFDGVHD-YR-GIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp TBCC-CCG-GGGGCSSCCEEECTTBCCCC-CT-TGGGCSSCCEEEECBC---
T ss_pred CCcc-ccH-hhcCCCCCCEEECCCCCCcC-hH-HhccCCCCCEEEeeCcccC
Confidence 4 33 333 45555555555555555553 22 4555566666666666554
No 377
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.71 E-value=3.3e-17 Score=166.14 Aligned_cols=177 Identities=20% Similarity=0.219 Sum_probs=104.8
Q ss_pred CEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCc-ccccccccccccccCcccccccCCCCCCCCCccccccCC
Q 047768 395 NSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPS-SLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPR 473 (1009)
Q Consensus 395 ~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~-~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~ 473 (1009)
+.+++++|+++ .+|..+.. +|++|+|++|++++..+. .|.++++|++|+|++|+|+
T Consensus 11 ~~l~~s~~~l~-~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~-------------------- 67 (192)
T 1w8a_A 11 TTVDCTGRGLK-EIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLT-------------------- 67 (192)
T ss_dssp TEEECTTSCCS-SCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCC--------------------
T ss_pred CEEEcCCCCcC-cCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCC--------------------
Confidence 56666666665 44444332 556666666666544332 2455555555444444444
Q ss_pred CCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccccc
Q 047768 474 NKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTI 553 (1009)
Q Consensus 474 N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~ 553 (1009)
+..|..|.++++|++|+|++|+|++..|..|..+++|++|+|++|+|++.+
T Consensus 68 -----------------------------~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~ 118 (192)
T 1w8a_A 68 -----------------------------GIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNLYDNQISCVM 118 (192)
T ss_dssp -----------------------------CBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEECCSSCCCEEC
T ss_pred -----------------------------CcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCeeC
Confidence 344555666677777777777777766677777778888888888887777
Q ss_pred ccccccccccceEcCCCcccccccccccccccccCceecccccCcccCCCCCcccCccccccccCCCcCCCCC
Q 047768 554 PQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGIFKNKTGFSIVGNGKLCGGLD 626 (1009)
Q Consensus 554 p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~ 626 (1009)
|..|+.+++|++|+|++|.+++..+... -...++...+..+...+.-|.. +.......+..+...|.+..
T Consensus 119 ~~~~~~l~~L~~L~L~~N~l~c~c~l~~-~~~~l~~~~~~~~~~~C~~P~~--l~~~~l~~l~~~~~~C~~~~ 188 (192)
T 1w8a_A 119 PGSFEHLNSLTSLNLASNPFNCNCHLAW-FAEWLRKKSLNGGAARCGAPSK--VRDVQIKDLPHSEFKCSSEN 188 (192)
T ss_dssp TTSSTTCTTCCEEECTTCCBCCSGGGHH-HHHHHHHHCCSGGGCBBCSSTT--TTTSBGGGSCTTTCCCCCC-
T ss_pred HHHhhcCCCCCEEEeCCCCccCcCcchH-HHHHHHHcCCCCCCCCCCCChH--HcCCChhhCcHhhcCcCCCC
Confidence 7778888888888888888876654211 0112333345555555555542 33444444455555565443
No 378
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.68 E-value=5.1e-18 Score=188.19 Aligned_cols=283 Identities=12% Similarity=0.053 Sum_probs=166.4
Q ss_pred ccccceeecccCcccCCCCccccc-ccccccccccCccCC--CCCCCcccCCChHHHHHhhCCccCCCCChhhccC----
Q 047768 191 LSALRVIDIRTNRLWGKIPITLSQ-LTSLAYLHVGDNHFS--GTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKN---- 263 (1009)
Q Consensus 191 l~~L~~L~L~~N~l~~~~p~~~~~-l~~L~~L~L~~N~l~--~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~---- 263 (1009)
+.+|+.|.++++ +....-..+.. +++|++|||++|++. ...+..+ +.+..+.+..| .||...|.+
T Consensus 24 ~~~l~~L~l~g~-i~~~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~---~~~~~~~~~~~----~I~~~aF~~~~~~ 95 (329)
T 3sb4_A 24 ANSITHLTLTGK-LNAEDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTY---PNGKFYIYMAN----FVPAYAFSNVVNG 95 (329)
T ss_dssp HHHCSEEEEEEE-ECHHHHHHHHHSCTTCCEEEEEEEEECCEEESSSSS---GGGCCEEECTT----EECTTTTEEEETT
T ss_pred hCceeEEEEecc-ccHHHHHHHHHhhccCeEEecCcceeEEecCccccc---ccccccccccc----ccCHHHhcccccc
Confidence 556666766654 21111123333 788999999999998 2222222 22333334444 678888988
Q ss_pred ----CCcccceeccccccCCCCCCCcCccccccccccccccccccccccccccccccccccccccc----CCCCCCCcch
Q 047768 264 ----LPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFL----GNGAANDLDF 335 (1009)
Q Consensus 264 ----l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l----~~~~~~~~~~ 335 (1009)
+++|+.|+|.+ +++.+.+.+|.++++|+.|++++|.+..+.+.+|.+..++..+.+..+.. ..+..
T Consensus 96 ~~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~----- 169 (329)
T 3sb4_A 96 VTKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEH----- 169 (329)
T ss_dssp EEEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTT-----
T ss_pred cccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccc-----
Confidence 99999999999 89888889999999999999999999999999999988887777665322 11111
Q ss_pred hhhcccccccc-eEEccCCCCCCcCchhhhhh---cccceEEEcCCCccccCCCccc-cCcCccCEEEccCCCCCCCCCC
Q 047768 336 VDLLTNCTKLQ-YLYLADNGFGGVLPHSIANL---STALIDFNLGKNQIYGTIPPGI-ANLVNLNSLRMEANRLTGTIPH 410 (1009)
Q Consensus 336 ~~~l~~l~~L~-~L~L~~N~l~~~~p~~~~~l---~~~L~~L~L~~N~l~~~~p~~~-~~l~~L~~L~L~~N~l~~~~p~ 410 (1009)
..|.++..|+ .+.+.... .++..+... ...+..+.+.++-.. .....+ ..+++|+.|+|++|+++.+.+.
T Consensus 170 -~~f~~~~~L~~~i~~~~~~---~l~~~~~~~~~~~~~~~~l~~~~~l~~-~~~~~l~~~~~~L~~l~L~~n~i~~I~~~ 244 (329)
T 3sb4_A 170 -FAFIEGEPLETTIQVGAMG---KLEDEIMKAGLQPRDINFLTIEGKLDN-ADFKLIRDYMPNLVSLDISKTNATTIPDF 244 (329)
T ss_dssp -SCEEESCCCEEEEEECTTC---CHHHHHHHTTCCGGGCSEEEEEECCCH-HHHHHHHHHCTTCCEEECTTBCCCEECTT
T ss_pred -cccccccccceeEEecCCC---cHHHHHhhcccCccccceEEEeeeecH-HHHHHHHHhcCCCeEEECCCCCcceecHh
Confidence 2355666776 55554322 233333221 123333433332111 000111 1245566666666666555555
Q ss_pred CcCCcccccceecccccccCCCCcccccccccc-cccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhcc
Q 047768 411 VIGELKNLQLLHLHANFLQGTIPSSLGNLTLLT-YLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITT 489 (1009)
Q Consensus 411 ~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~-~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~ 489 (1009)
+|.++.+|+.|+|.+| ++.+.+..|.++++|+ .+++.+ .++..
T Consensus 245 aF~~~~~L~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~I---------------------------------- 288 (329)
T 3sb4_A 245 TFAQKKYLLKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTAI---------------------------------- 288 (329)
T ss_dssp TTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCEE----------------------------------
T ss_pred hhhCCCCCCEEECCcc-cceehHHHhhCChhccEEEEEcc-cceEE----------------------------------
Confidence 5555555666655555 4434444455555555 554444 33322
Q ss_pred ceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEE
Q 047768 490 LSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVE 543 (1009)
Q Consensus 490 ~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~ 543 (1009)
-+..|.++++|+.|++++|+++...+.+|.++++|+.|+
T Consensus 289 ---------------~~~aF~~c~~L~~l~l~~n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 289 ---------------EFGAFMGCDNLRYVLATGDKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp ---------------CTTTTTTCTTEEEEEECSSCCCEECTTTTCTTCCCCEEE
T ss_pred ---------------chhhhhCCccCCEEEeCCCccCccchhhhcCCcchhhhc
Confidence 234455666666667666666655556677777777665
No 379
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.67 E-value=3.9e-17 Score=165.53 Aligned_cols=134 Identities=21% Similarity=0.204 Sum_probs=105.4
Q ss_pred EecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccc
Q 047768 494 LDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNF 573 (1009)
Q Consensus 494 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 573 (1009)
|++++|+++ .+|..|.++++|++|+|++|+|++..+..|.++++|++|+|++|+|++..|..|.++++|++|+|++|+|
T Consensus 36 L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~~N~l 114 (193)
T 2wfh_A 36 LYLDGNQFT-LVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLHGNDI 114 (193)
T ss_dssp EECCSSCCC-SCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSSCC
T ss_pred EECCCCcCc-hhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECCCCCC
Confidence 666666666 5677888899999999999999988888899999999999999999988888999999999999999999
Q ss_pred ccccccccccccccCceecccccCcccCCCCCcccCccccccccCCCcCCCCCCC
Q 047768 574 SGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGIFKNKTGFSIVGNGKLCGGLDEL 628 (1009)
Q Consensus 574 ~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~~~~~~~~~~~~n~~lc~~~~~~ 628 (1009)
++..+..|..+++|++|+|++|++.+.+...+............+...|..|...
T Consensus 115 ~~~~~~~~~~l~~L~~L~L~~N~~~C~c~l~~l~~~~~~~~~~~~~~~C~~P~~l 169 (193)
T 2wfh_A 115 SVVPEGAFNDLSALSHLAIGANPLYCDCNMQWLSDWVKSEYKEPGIARCAGPGEM 169 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCEECSGGGHHHHHHHHHSSCCCSCCBEEESGGG
T ss_pred CeeChhhhhcCccccEEEeCCCCeecCCcCHHHHHHHHhccCCCCCcCcCCchHH
Confidence 9766677999999999999999999877643211111111122233467666554
No 380
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.66 E-value=2.2e-16 Score=156.42 Aligned_cols=139 Identities=22% Similarity=0.258 Sum_probs=116.6
Q ss_pred CCCCCCeeeecCCcCC-ccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCc
Q 047768 92 NLSFLRYINIADNDFH-GEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNL 170 (1009)
Q Consensus 92 ~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L 170 (1009)
..++|++|+|++|.++ +.+|..+..+++|++|+|++|.+++. ..++.+++|++|++++|.+++.+|..+ ..+++|
T Consensus 22 ~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~~--~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV--SNLPKLPKLKKLELSENRIFGGLDMLA--EKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC--SSCCCCSSCCEEEEESCCCCSCCCHHH--HHCTTC
T ss_pred CcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh--hhhccCCCCCEEECcCCcCchHHHHHH--hhCCCC
Confidence 3478999999999998 78898899999999999999999865 788899999999999999987777665 458899
Q ss_pred CeEeecCccCCCCC-CcccCCccccceeecccCcccCCCC---cccccccccccccccCccCCCCCCCc
Q 047768 171 QGLSVGDNQLTGQL-PASIGNLSALRVIDIRTNRLWGKIP---ITLSQLTSLAYLHVGDNHFSGTIPPS 235 (1009)
Q Consensus 171 ~~L~L~~n~l~~~~-p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~N~l~~~~p~~ 235 (1009)
++|+|++|++++.. +..++.+++|++|++++|++++..+ ..|..+++|++|++++|.+. .+|.+
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~~n~~~-~~~~~ 165 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGYDREDQ-EAPDS 165 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTEETTSC-BCCSS
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCCCCChh-hcccc
Confidence 99999999998643 2778899999999999999976665 57888999999999999887 45543
No 381
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.65 E-value=3.8e-16 Score=156.15 Aligned_cols=137 Identities=19% Similarity=0.261 Sum_probs=96.4
Q ss_pred CCCCC-CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccC
Q 047768 53 CVNLC-QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFS 131 (1009)
Q Consensus 53 ~~~~c-~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~ 131 (1009)
|++.| |+|++|.|+.. +++. +|..+ .++|++|++++|++++..+..|+++++|++|+|++|+++
T Consensus 1 Cp~~C~C~~~~l~~~~~------------~l~~-~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~ 65 (177)
T 2o6r_A 1 CPSRCSCSGTEIRCNSK------------GLTS-VPTGI--PSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQ 65 (177)
T ss_dssp CCTTCEEETTEEECCSS------------CCSS-CCTTC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCC
T ss_pred CcCCCEeCCCEEEecCC------------CCcc-CCCCC--CCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcce
Confidence 44444 57999988653 3332 23322 368899999999998666667888999999999999988
Q ss_pred CCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcc
Q 047768 132 GRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPIT 211 (1009)
Q Consensus 132 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~ 211 (1009)
+..+..|+++++|++|++++|++ ++..+..|.++++|++|+|++|++++..+..
T Consensus 66 ~~~~~~~~~l~~L~~L~l~~N~l--------------------------~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~ 119 (177)
T 2o6r_A 66 SLPDGVFDKLTKLTILYLHENKL--------------------------QSLPNGVFDKLTQLKELALDTNQLKSVPDGI 119 (177)
T ss_dssp CCCTTTTTTCTTCCEEECCSSCC--------------------------CCCCTTTTTTCTTCCEEECCSSCCSCCCTTT
T ss_pred EeChhHccCCCccCEEECCCCCc--------------------------cccCHHHhhCCcccCEEECcCCcceEeCHHH
Confidence 66666677766666666665544 4444555667777777777777777666666
Q ss_pred cccccccccccccCccCCC
Q 047768 212 LSQLTSLAYLHVGDNHFSG 230 (1009)
Q Consensus 212 ~~~l~~L~~L~L~~N~l~~ 230 (1009)
|..+++|++|+|++|.+++
T Consensus 120 ~~~l~~L~~L~l~~N~~~~ 138 (177)
T 2o6r_A 120 FDRLTSLQKIWLHTNPWDC 138 (177)
T ss_dssp TTTCTTCCEEECCSSCBCC
T ss_pred hcCCcccCEEEecCCCeec
Confidence 6777777888888777764
No 382
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.63 E-value=3.7e-16 Score=151.40 Aligned_cols=130 Identities=18% Similarity=0.213 Sum_probs=112.2
Q ss_pred CCCCCCeeeecCCcCC-ccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCc
Q 047768 92 NLSFLRYINIADNDFH-GEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNL 170 (1009)
Q Consensus 92 ~l~~L~~L~L~~n~~~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L 170 (1009)
..++|++|++++|.++ +.+|..++.+++|++|+|++|.+++. ..++++++|++|++++|.+++.+|..+ ..+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~--~~~~~l~~L~~L~Ls~n~i~~~~~~~~--~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI--ANLPKLNKLKKLELSDNRVSGGLEVLA--EKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC--TTCCCCTTCCEEECCSSCCCSCTHHHH--HHCTTC
T ss_pred CCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc--hhhhcCCCCCEEECCCCcccchHHHHh--hhCCCC
Confidence 3478899999999998 88999899999999999999999866 788999999999999999988777765 568899
Q ss_pred CeEeecCccCCCC-CCcccCCccccceeecccCcccCCCC---cccccccccccccccC
Q 047768 171 QGLSVGDNQLTGQ-LPASIGNLSALRVIDIRTNRLWGKIP---ITLSQLTSLAYLHVGD 225 (1009)
Q Consensus 171 ~~L~L~~n~l~~~-~p~~~~~l~~L~~L~L~~N~l~~~~p---~~~~~l~~L~~L~L~~ 225 (1009)
++|++++|++++. .+..++++++|++|++++|++++..+ ..+..+++|++|++++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 9999999999864 34788999999999999999987766 5788999999999864
No 383
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.62 E-value=1.1e-15 Score=154.81 Aligned_cols=136 Identities=23% Similarity=0.321 Sum_probs=98.1
Q ss_pred CCCCCC-CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecCCcCCccCCccccCcccccccccccccc
Q 047768 52 ACVNLC-QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSF 130 (1009)
Q Consensus 52 ~~~~~c-~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l 130 (1009)
.|+..| |.|+.|.| ++++++. +|..+. ++|++|+|++|+|+ .+|..|.++++|++|+|++|.|
T Consensus 3 ~CP~~C~C~~~~l~~------------~~~~l~~-ip~~~~--~~l~~L~L~~n~i~-~ip~~~~~l~~L~~L~Ls~N~i 66 (193)
T 2wfh_A 3 RCPTECTCLDTVVRC------------SNKGLKV-LPKGIP--RDVTELYLDGNQFT-LVPKELSNYKHLTLIDLSNNRI 66 (193)
T ss_dssp -CCTTCEEETTEEEC------------TTSCCSS-CCSCCC--TTCCEEECCSSCCC-SCCGGGGGCTTCCEEECCSSCC
T ss_pred CCCCCCEeCCCEEEc------------CCCCCCc-CCCCCC--CCCCEEECCCCcCc-hhHHHhhcccCCCEEECCCCcC
Confidence 466666 34544444 4555553 444443 57899999999998 7888899999999999999999
Q ss_pred CCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCc
Q 047768 131 SGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPI 210 (1009)
Q Consensus 131 ~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~ 210 (1009)
++..|..|.++++|++|+|++|.+ ++..|..|.++++|++|+|++|+|++..+.
T Consensus 67 ~~i~~~~f~~l~~L~~L~Ls~N~l--------------------------~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~ 120 (193)
T 2wfh_A 67 STLSNQSFSNMTQLLTLILSYNRL--------------------------RCIPPRTFDGLKSLRLLSLHGNDISVVPEG 120 (193)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCC--------------------------CBCCTTTTTTCTTCCEEECCSSCCCBCCTT
T ss_pred CEeCHhHccCCCCCCEEECCCCcc--------------------------CEeCHHHhCCCCCCCEEECCCCCCCeeChh
Confidence 877777787777776666666554 445556677777777777777777766666
Q ss_pred ccccccccccccccCccCC
Q 047768 211 TLSQLTSLAYLHVGDNHFS 229 (1009)
Q Consensus 211 ~~~~l~~L~~L~L~~N~l~ 229 (1009)
.|..+++|++|+|++|.+.
T Consensus 121 ~~~~l~~L~~L~L~~N~~~ 139 (193)
T 2wfh_A 121 AFNDLSALSHLAIGANPLY 139 (193)
T ss_dssp TTTTCTTCCEEECCSSCEE
T ss_pred hhhcCccccEEEeCCCCee
Confidence 7777778888888887776
No 384
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.62 E-value=7e-16 Score=152.76 Aligned_cols=90 Identities=21% Similarity=0.272 Sum_probs=52.3
Q ss_pred ccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccccc-ccccccccccceEcCCCcccccccc---cccccc
Q 047768 509 VGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTI-PQSLSSLTSIKELDLSQNNFSGQIP---KYLENL 584 (1009)
Q Consensus 509 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~-p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l 584 (1009)
++.+++|++|++++|++++.+|..+..+++|++|+|++|++++.. +..++.+++|+.|+|++|.+++..+ ..+..+
T Consensus 67 ~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l 146 (168)
T 2ell_A 67 LPKLPKLKKLELSENRIFGGLDMLAEKLPNLTHLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLL 146 (168)
T ss_dssp CCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTC
T ss_pred hccCCCCCEEECcCCcCchHHHHHHhhCCCCCEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhC
Confidence 344555555666666655555555555666666666666665432 2556666666666666666664333 356666
Q ss_pred cccCceecccccCc
Q 047768 585 SFLQYLNLSYNHFE 598 (1009)
Q Consensus 585 ~~L~~L~ls~N~l~ 598 (1009)
++|++|++++|.+.
T Consensus 147 ~~L~~L~l~~n~~~ 160 (168)
T 2ell_A 147 PQLTYLDGYDREDQ 160 (168)
T ss_dssp SSCCEETTEETTSC
T ss_pred ccCcEecCCCCChh
Confidence 66666666666654
No 385
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.61 E-value=8e-16 Score=149.00 Aligned_cols=128 Identities=22% Similarity=0.283 Sum_probs=91.0
Q ss_pred cccccccccCcccc-cccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCee
Q 047768 440 TLLTYLSFGANNLQ-GNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRL 518 (1009)
Q Consensus 440 ~~L~~L~L~~N~l~-~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L 518 (1009)
++|++|++++|.++ +.+|..+..+++|++|++++|.++ +. ..++++++|++|
T Consensus 17 ~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~-------------------------~~--~~~~~l~~L~~L 69 (149)
T 2je0_A 17 SDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLT-------------------------SI--ANLPKLNKLKKL 69 (149)
T ss_dssp GGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCC-------------------------CC--TTCCCCTTCCEE
T ss_pred ccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCC-------------------------Cc--hhhhcCCCCCEE
Confidence 44555555555555 455555555555554333333333 22 456677888888
Q ss_pred eccccccCCCccccccCCCCccEEEecCcccccc-cccccccccccceEcCCCcccccccc---cccccccccCceeccc
Q 047768 519 GIARNQFSGQIPVTLGACTSLEYVELQGNSFSGT-IPQSLSSLTSIKELDLSQNNFSGQIP---KYLENLSFLQYLNLSY 594 (1009)
Q Consensus 519 ~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~-~p~~~~~l~~L~~L~Ls~N~l~~~~p---~~~~~l~~L~~L~ls~ 594 (1009)
++++|++++.+|..+..+++|++|+|++|++++. .|..++.+++|++|++++|++++..+ ..+..+++|++||+++
T Consensus 70 ~Ls~n~i~~~~~~~~~~l~~L~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~d 149 (149)
T 2je0_A 70 ELSDNRVSGGLEVLAEKCPNLTHLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDGYD 149 (149)
T ss_dssp ECCSSCCCSCTHHHHHHCTTCCEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETTBC
T ss_pred ECCCCcccchHHHHhhhCCCCCEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccCCC
Confidence 8888888877888888888888888888888864 45788888889999999998886655 4788888888888874
No 386
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.59 E-value=2.6e-15 Score=150.07 Aligned_cols=110 Identities=24% Similarity=0.279 Sum_probs=90.1
Q ss_pred EecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCccc
Q 047768 494 LDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNF 573 (1009)
Q Consensus 494 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 573 (1009)
|++++|++++..+..|+++++|++|++++|++++..+..+..+++|++|+|++|+|++..+..|+.+++|++|+|++|+|
T Consensus 33 L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 112 (177)
T 2o6r_A 33 LELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENKLQSLPNGVFDKLTQLKELALDTNQL 112 (177)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCCccccCHHHhhCCcccCEEECcCCcc
Confidence 66666666655555677888888899999988876667788889999999999999877777788899999999999999
Q ss_pred ccccccccccccccCceecccccCcccCCC
Q 047768 574 SGQIPKYLENLSFLQYLNLSYNHFEGEVPT 603 (1009)
Q Consensus 574 ~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~ 603 (1009)
++..+..+..+++|++|++++|+++|.+|.
T Consensus 113 ~~~~~~~~~~l~~L~~L~l~~N~~~~~~~~ 142 (177)
T 2o6r_A 113 KSVPDGIFDRLTSLQKIWLHTNPWDCSCPR 142 (177)
T ss_dssp SCCCTTTTTTCTTCCEEECCSSCBCCCHHH
T ss_pred eEeCHHHhcCCcccCEEEecCCCeeccCcc
Confidence 866666678889999999999999888774
No 387
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.58 E-value=3.4e-15 Score=168.86 Aligned_cols=271 Identities=11% Similarity=0.108 Sum_probs=180.7
Q ss_pred cCCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHH
Q 047768 167 LFNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIY 246 (1009)
Q Consensus 167 l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~ 246 (1009)
...++.+.+.+ .++.+-..+|.+. +|+.+.+.+| +..+...+|.+ .+|+.+.|.+ .++..-+.+|.++++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 35566666653 4554555667764 6888887766 66666677777 4677777775 55545556777777777777
Q ss_pred hhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccC
Q 047768 247 LYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLG 326 (1009)
Q Consensus 247 L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~ 326 (1009)
|++|+++ .||...|. ..+|+.+.|.. +++.+...+|.++++|+.+++..| ++.+...+|.+ .+|+.+.+. |.+.
T Consensus 187 l~~n~l~-~I~~~aF~-~~~L~~l~lp~-~l~~I~~~aF~~~~~L~~l~l~~~-l~~I~~~aF~~-~~L~~i~lp-~~i~ 260 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFV-YAGIEEVLLPV-TLKEIGSQAFLKTSQLKTIEIPEN-VSTIGQEAFRE-SGITTVKLP-NGVT 260 (401)
T ss_dssp CTTSCCS-EECTTTTT-TCCCSEEECCT-TCCEECTTTTTTCTTCCCEECCTT-CCEECTTTTTT-CCCSEEEEE-TTCC
T ss_pred cCCCcce-EechhhEe-ecccCEEEeCC-chheehhhHhhCCCCCCEEecCCC-ccCcccccccc-CCccEEEeC-CCcc
Confidence 7777777 77777776 47788888874 366677778888888888888764 66677777777 677777773 3444
Q ss_pred CCCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCC
Q 047768 327 NGAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTG 406 (1009)
Q Consensus 327 ~~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~ 406 (1009)
.++. .+|.+|++|+.+++.+|.+.. +.+....+.+|.++++|+.++|. |.++.
T Consensus 261 ~I~~------~aF~~c~~L~~l~l~~~~~~~--------------------~~~~~I~~~aF~~c~~L~~l~l~-~~i~~ 313 (401)
T 4fdw_A 261 NIAS------RAFYYCPELAEVTTYGSTFND--------------------DPEAMIHPYCLEGCPKLARFEIP-ESIRI 313 (401)
T ss_dssp EECT------TTTTTCTTCCEEEEESSCCCC--------------------CTTCEECTTTTTTCTTCCEECCC-TTCCE
T ss_pred EECh------hHhhCCCCCCEEEeCCccccC--------------------CcccEECHHHhhCCccCCeEEeC-CceEE
Confidence 4433 456777777777777765540 11112345667777777777777 44665
Q ss_pred CCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCC-CccccccCCCCcc
Q 047768 407 TIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCK-NLMFFFAPRNKLT 477 (1009)
Q Consensus 407 ~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~-~L~~l~l~~N~l~ 477 (1009)
+...+|.++++|+.++|..| ++...+.+|.++ +|+.+++++|.+....+..|.+++ ++..+++..+.+.
T Consensus 314 I~~~aF~~c~~L~~l~lp~~-l~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~~~ 383 (401)
T 4fdw_A 314 LGQGLLGGNRKVTQLTIPAN-VTQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAESVE 383 (401)
T ss_dssp ECTTTTTTCCSCCEEEECTT-CCEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGGHH
T ss_pred EhhhhhcCCCCccEEEECcc-ccEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHHHH
Confidence 66667777777777777544 554556677777 777777777777655566666664 5666766665543
No 388
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.55 E-value=4.5e-17 Score=166.16 Aligned_cols=89 Identities=17% Similarity=0.170 Sum_probs=61.5
Q ss_pred CCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccc-cccccccccceEcCCCcccccccccc----
Q 047768 506 PLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIP-QSLSSLTSIKELDLSQNNFSGQIPKY---- 580 (1009)
Q Consensus 506 p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p-~~~~~l~~L~~L~Ls~N~l~~~~p~~---- 580 (1009)
|..+..+++|++|++++|++++ +| .++.+++|+.|+|++|++++..+ ..+..+++|++|++++|.+++.+|..
T Consensus 86 ~~~~~~~~~L~~L~L~~N~l~~-l~-~~~~l~~L~~L~l~~N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~ 163 (198)
T 1ds9_A 86 ENLDAVADTLEELWISYNQIAS-LS-GIEKLVNLRVLYMSNNKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATS 163 (198)
T ss_dssp SSHHHHHHHCSEEEEEEEECCC-HH-HHHHHHHSSEEEESEEECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHH
T ss_pred cchhhcCCcCCEEECcCCcCCc-CC-ccccCCCCCEEECCCCcCCchhHHHHHhcCCCCCEEEecCCccccccccccchH
Confidence 3334445677777777777775 44 57777778888888887774332 46777788888888888887666543
Q ss_pred ------cccccccCceecccccCc
Q 047768 581 ------LENLSFLQYLNLSYNHFE 598 (1009)
Q Consensus 581 ------~~~l~~L~~L~ls~N~l~ 598 (1009)
+..+++|++|| +|+++
T Consensus 164 ~~~~~~~~~l~~L~~Ld--~~~i~ 185 (198)
T 1ds9_A 164 EYRIEVVKRLPNLKKLD--GMPVD 185 (198)
T ss_dssp HHHHHHHHHCSSCSEEC--CGGGT
T ss_pred HHHHHHHHhCCCcEEEC--CcccC
Confidence 77788888776 66554
No 389
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.55 E-value=1.2e-14 Score=164.55 Aligned_cols=126 Identities=12% Similarity=0.097 Sum_probs=59.8
Q ss_pred CcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhh
Q 047768 169 NLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLY 248 (1009)
Q Consensus 169 ~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 248 (1009)
+|+.+.+.+ .++.+.+.+|.++++|+.++|++|+++.....+|. ..+|+.+.|.++ ++..-..+|.++++|+.+++.
T Consensus 158 ~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~-~~~L~~l~lp~~-l~~I~~~aF~~~~~L~~l~l~ 234 (401)
T 4fdw_A 158 TVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFV-YAGIEEVLLPVT-LKEIGSQAFLKTSQLKTIEIP 234 (401)
T ss_dssp CCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTT-TCCCSEEECCTT-CCEECTTTTTTCTTCCCEECC
T ss_pred CceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEe-ecccCEEEeCCc-hheehhhHhhCCCCCCEEecC
Confidence 344455543 44434445556666666666666666544444554 355555555533 432333444444444444444
Q ss_pred CCccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccccc
Q 047768 249 GNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQF 301 (1009)
Q Consensus 249 ~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l 301 (1009)
.| ++ .|+..+|.+ .+|+.+.+ .|+++.+...+|.++++|+.+++.+|.+
T Consensus 235 ~~-l~-~I~~~aF~~-~~L~~i~l-p~~i~~I~~~aF~~c~~L~~l~l~~~~~ 283 (401)
T 4fdw_A 235 EN-VS-TIGQEAFRE-SGITTVKL-PNGVTNIASRAFYYCPELAEVTTYGSTF 283 (401)
T ss_dssp TT-CC-EECTTTTTT-CCCSEEEE-ETTCCEECTTTTTTCTTCCEEEEESSCC
T ss_pred CC-cc-Ccccccccc-CCccEEEe-CCCccEEChhHhhCCCCCCEEEeCCccc
Confidence 32 33 444444443 44444444 2334434444444444444444444433
No 390
>4gyi_A RIO2 kinase; protein kinase, ADP complex, phosphoaspartate, acyl-phosphat ribosome biogenesis, Ser/Thr protein kinase; HET: PHD ADP; 2.20A {Chaetomium thermophilum} PDB: 4gyg_A
Probab=99.53 E-value=6e-15 Score=162.36 Aligned_cols=144 Identities=13% Similarity=0.182 Sum_probs=102.4
Q ss_pred HHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeeccccc--------------chH--------HHHHHHHHH
Q 047768 695 ELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKG--------------GSK--------SFAAECEAL 752 (1009)
Q Consensus 695 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~--------------~~~--------~~~~E~~~l 752 (1009)
.+.....-|.+...||+|+||.||+|... +|+.||||+++..... ... ...+|...|
T Consensus 89 ~L~~rg~iY~I~~~IG~Gk~a~VY~a~d~-~G~~vAvKi~r~~~~sfr~v~~~r~~~~~~~~~~~~~~~rl~A~kE~~nL 167 (397)
T 4gyi_A 89 THAARKDVYSVGSRIGVGKESDIMIVADE-KGKQKVLKIHRLGRISFRTVKANRDYLRNRSTGSWMYLSRLAAIKEFAFM 167 (397)
T ss_dssp HHHHTTSCSEEEEEEEECSSEEEEEEECT-TCCEEEEEEECTTEECCCCCC--CEECTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHCCCEEEecCEeeeCCceEEEEEECC-CCCEEEEEEEecccccHHHHHHHHHHHHhhccccHHHHHHHHHHHHHHHH
Confidence 33444445889999999999999999885 7999999998532110 011 123466666
Q ss_pred HhcCCCCcc--eEEeeeeccccCCCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCC
Q 047768 753 RSIRHRNLI--KIVTICSSIDFKGVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQ 830 (1009)
Q Consensus 753 ~~l~h~niv--~l~~~~~~~~~~~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~ 830 (1009)
.++.+.++. ..+++ ...++||||+++++|.++... .....++.|++.++.|||+.
T Consensus 168 ~rL~~~gv~vp~p~~~---------~~~~LVME~i~G~~L~~l~~~------------~~~~~l~~qll~~l~~lH~~-- 224 (397)
T 4gyi_A 168 KALYEEGFPVPEPIAQ---------SRHTIVMSLVDALPMRQVSSV------------PDPASLYADLIALILRLAKH-- 224 (397)
T ss_dssp HHHHHTTCSCCCEEEE---------ETTEEEEECCSCEEGGGCCCC------------SCHHHHHHHHHHHHHHHHHT--
T ss_pred HHHHhcCCCCCeeeec---------cCceEEEEecCCccHhhhccc------------HHHHHHHHHHHHHHHHHHHC--
Confidence 666544432 22222 223799999999888654321 12356889999999999998
Q ss_pred CCceecCCCCCceeeCCCC----------ceEEeccccccccC
Q 047768 831 PPIVHGDLKPSNVLLDHDM----------VAHVSDFGLAKFLS 863 (1009)
Q Consensus 831 ~~ivHrdlk~~Nill~~~~----------~~kl~DfGla~~~~ 863 (1009)
+||||||||.|||+++++ .+.|+||+-+....
T Consensus 225 -gIVHrDLKp~NILl~~dgd~~d~~~~~~~~~iID~~Q~V~~~ 266 (397)
T 4gyi_A 225 -GLIHGDFNEFNILIREEKDAEDPSSITLTPIIIXFPQMVSMD 266 (397)
T ss_dssp -TEECSCCSTTSEEEEEEECSSCTTSEEEEEEECCCTTCEETT
T ss_pred -CCcCCCCCHHHEEEeCCCCcccccccccceEEEEeCCcccCC
Confidence 999999999999998876 38999999776543
No 391
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.53 E-value=1.8e-14 Score=142.66 Aligned_cols=108 Identities=22% Similarity=0.276 Sum_probs=98.3
Q ss_pred eEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcc
Q 047768 493 SLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNN 572 (1009)
Q Consensus 493 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 572 (1009)
.+++++|.++ .+|..+. ++|++|+|++|+|++..|..|..+++|++|+|++|+|++..|..|.++++|++|+|++|+
T Consensus 13 ~l~~s~n~l~-~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N~ 89 (170)
T 3g39_A 13 TVDCSGKSLA-SVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDNQ 89 (170)
T ss_dssp EEECTTSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCcC-ccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCCc
Confidence 4899999998 4777664 889999999999998889999999999999999999998888889999999999999999
Q ss_pred cccccccccccccccCceecccccCcccCCC
Q 047768 573 FSGQIPKYLENLSFLQYLNLSYNHFEGEVPT 603 (1009)
Q Consensus 573 l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~ 603 (1009)
|++..|..|..+++|++|+|++|++++.++.
T Consensus 90 l~~~~~~~~~~l~~L~~L~L~~N~~~c~c~~ 120 (170)
T 3g39_A 90 LKSIPRGAFDNLKSLTHIWLLNNPWDCACSD 120 (170)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCBCTTBGG
T ss_pred cCEeCHHHhcCCCCCCEEEeCCCCCCCCchh
Confidence 9987777899999999999999999998874
No 392
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.50 E-value=3.8e-14 Score=140.74 Aligned_cols=108 Identities=21% Similarity=0.288 Sum_probs=97.3
Q ss_pred eEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcc
Q 047768 493 SLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNN 572 (1009)
Q Consensus 493 ~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~ 572 (1009)
.+++++|+++ .+|..+. ++|++|+|++|+|++..|..|+.+++|++|+|++|+|++..+..|.++++|++|||++|+
T Consensus 16 ~l~~~~n~l~-~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 16 LVNCQNIRLA-SVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp EEECCSSCCS-SCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred EEEeCCCCCC-ccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 4899999996 6787765 899999999999999889999999999999999999998777778999999999999999
Q ss_pred cccccccccccccccCceecccccCcccCCC
Q 047768 573 FSGQIPKYLENLSFLQYLNLSYNHFEGEVPT 603 (1009)
Q Consensus 573 l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~ 603 (1009)
|++..+..|..+++|++|+|++|++.+.++.
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~N~~~c~~~~ 123 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYNNPWDCECRD 123 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCSSCBCTTBGG
T ss_pred cceeCHHHhccccCCCEEEeCCCCccccccc
Confidence 9976666799999999999999999987763
No 393
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.50 E-value=1.4e-16 Score=162.54 Aligned_cols=151 Identities=23% Similarity=0.330 Sum_probs=96.7
Q ss_pred cceEEEcCCCccccCCCc------cccCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCccccccccc
Q 047768 369 ALIDFNLGKNQIYGTIPP------GIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLL 442 (1009)
Q Consensus 369 ~L~~L~L~~N~l~~~~p~------~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L 442 (1009)
.++.++++.|.+++..|. .+..+++|++|+|++|++++ +| .+..+++|++|+|++|+++ .+|..+..+++|
T Consensus 19 ~l~~l~l~~~~l~~~~~~l~~l~~~~~~l~~L~~L~ls~n~l~~-l~-~~~~l~~L~~L~l~~n~l~-~l~~~~~~~~~L 95 (198)
T 1ds9_A 19 SVVATEAEKVELHGMIPPIEKMDATLSTLKACKHLALSTNNIEK-IS-SLSGMENLRILSLGRNLIK-KIENLDAVADTL 95 (198)
T ss_dssp CCCCTTCSEEECCBCCTTCCCCHHHHHHTTTCSEEECSEEEESC-CC-CHHHHTTCCEEEEEEEEEC-SCSSHHHHHHHC
T ss_pred cccCcchheeEeccccCcHhhhhHHHhcCCCCCEEECCCCCCcc-cc-ccccCCCCCEEECCCCCcc-cccchhhcCCcC
Confidence 445555555555555554 55555555555555555553 33 5555555555555555555 344444444555
Q ss_pred ccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccc
Q 047768 443 TYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIAR 522 (1009)
Q Consensus 443 ~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~ 522 (1009)
++|++++|++++ +| .++.+++|++|++++
T Consensus 96 ~~L~L~~N~l~~--------------------------------------------------l~-~~~~l~~L~~L~l~~ 124 (198)
T 1ds9_A 96 EELWISYNQIAS--------------------------------------------------LS-GIEKLVNLRVLYMSN 124 (198)
T ss_dssp SEEEEEEEECCC--------------------------------------------------HH-HHHHHHHSSEEEESE
T ss_pred CEEECcCCcCCc--------------------------------------------------CC-ccccCCCCCEEECCC
Confidence 555555554442 22 355667888899999
Q ss_pred cccCCCcc-ccccCCCCccEEEecCcccccccccc----------cccccccceEcCCCccccc
Q 047768 523 NQFSGQIP-VTLGACTSLEYVELQGNSFSGTIPQS----------LSSLTSIKELDLSQNNFSG 575 (1009)
Q Consensus 523 N~l~~~~p-~~~~~l~~L~~L~L~~N~l~~~~p~~----------~~~l~~L~~L~Ls~N~l~~ 575 (1009)
|++++..+ ..+..+++|++|++++|++++.+|.. +..+++|+.|| +|.++.
T Consensus 125 N~i~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~~~~~~~~l~~L~~Ld--~~~i~~ 186 (198)
T 1ds9_A 125 NKITNWGEIDKLAALDKLEDLLLAGNPLYNDYKENNATSEYRIEVVKRLPNLKKLD--GMPVDV 186 (198)
T ss_dssp EECCCHHHHHHHTTTTTCSEEEECSCHHHHHHHTTTTHHHHHHHHHHHCSSCSEEC--CGGGTT
T ss_pred CcCCchhHHHHHhcCCCCCEEEecCCccccccccccchHHHHHHHHHhCCCcEEEC--CcccCH
Confidence 98885333 47888999999999999998777653 88899999998 677763
No 394
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.50 E-value=2e-14 Score=143.43 Aligned_cols=134 Identities=16% Similarity=0.222 Sum_probs=101.2
Q ss_pred ccccCCCCCCeeeecCCcCCccCCccccCcc-ccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhc
Q 047768 88 PYVGNLSFLRYINIADNDFHGEIPDRIGNLF-RLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRR 166 (1009)
Q Consensus 88 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~-~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~ 166 (1009)
+.+.+..+|++|+|++|+++ .+|. +..+. +|++|||++|.+++. ..|+++++|++|++++|.+++ +|..++ ..
T Consensus 13 ~~~~~~~~L~~L~l~~n~l~-~i~~-~~~~~~~L~~L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~-~~~~~~-~~ 86 (176)
T 1a9n_A 13 AQYTNAVRDRELDLRGYKIP-VIEN-LGATLDQFDAIDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICR-IGEGLD-QA 86 (176)
T ss_dssp CEEECTTSCEEEECTTSCCC-SCCC-GGGGTTCCSEEECCSSCCCEE--CCCCCCSSCCEEECCSSCCCE-ECSCHH-HH
T ss_pred HhcCCcCCceEEEeeCCCCc-hhHH-hhhcCCCCCEEECCCCCCCcc--cccccCCCCCEEECCCCcccc-cCcchh-hc
Confidence 44677888999999999998 5565 55554 899999999999864 678888888888888888874 443332 46
Q ss_pred cCCcCeEeecCccCCCCCCc--ccCCccccceeecccCcccCCCCc----ccccccccccccccCccCC
Q 047768 167 LFNLQGLSVGDNQLTGQLPA--SIGNLSALRVIDIRTNRLWGKIPI----TLSQLTSLAYLHVGDNHFS 229 (1009)
Q Consensus 167 l~~L~~L~L~~n~l~~~~p~--~~~~l~~L~~L~L~~N~l~~~~p~----~~~~l~~L~~L~L~~N~l~ 229 (1009)
+++|++|+|++|+++ .+|. .++.+++|++|++++|.+. .+|. .+..+++|++||+++|.+.
T Consensus 87 l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 87 LPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp CTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 778888888888886 4554 6778888888888888886 3454 3777888888888877764
No 395
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.49 E-value=1.1e-13 Score=157.26 Aligned_cols=77 Identities=14% Similarity=0.226 Sum_probs=37.1
Q ss_pred ccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccccC
Q 047768 509 VGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQ 588 (1009)
Q Consensus 509 ~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~ 588 (1009)
|.++.+|+.++|.++ ++..-..+|.+|.+|+.+++..| ++..-..+|.++++|+.+++..| ++ .+...|.++++|+
T Consensus 316 F~~c~~L~~i~lp~~-v~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~ 391 (394)
T 4fs7_A 316 FESCTSLVSIDLPYL-VEEIGKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFK 391 (394)
T ss_dssp TTTCTTCCEECCCTT-CCEECTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEE
T ss_pred hcCCCCCCEEEeCCc-ccEEhHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCc
Confidence 444455555555432 33233445555555555555544 44344455555555555555433 22 2334455555554
Q ss_pred c
Q 047768 589 Y 589 (1009)
Q Consensus 589 ~ 589 (1009)
.
T Consensus 392 ~ 392 (394)
T 4fs7_A 392 W 392 (394)
T ss_dssp E
T ss_pred E
Confidence 3
No 396
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.49 E-value=1.7e-14 Score=143.89 Aligned_cols=101 Identities=22% Similarity=0.231 Sum_probs=72.9
Q ss_pred EecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCccccccccc--ccccccccceEcCCCc
Q 047768 494 LDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQ--SLSSLTSIKELDLSQN 571 (1009)
Q Consensus 494 L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~--~~~~l~~L~~L~Ls~N 571 (1009)
|++++|.+++. ..++.+++|++|++++|+|++..|..+..+++|++|+|++|+|+ .+|. .++.+++|+.|+|++|
T Consensus 47 L~Ls~N~l~~~--~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N 123 (176)
T 1a9n_A 47 IDFSDNEIRKL--DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTELILTNNSLV-ELGDLDPLASLKSLTYLCILRN 123 (176)
T ss_dssp EECCSSCCCEE--CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEEECCSCCCC-CGGGGGGGGGCTTCCEEECCSS
T ss_pred EECCCCCCCcc--cccccCCCCCEEECCCCcccccCcchhhcCCCCCEEECCCCcCC-cchhhHhhhcCCCCCEEEecCC
Confidence 44444444432 35667778888888888887544445578888888888888886 4555 7788888888888888
Q ss_pred ccccccccc----cccccccCceecccccCc
Q 047768 572 NFSGQIPKY----LENLSFLQYLNLSYNHFE 598 (1009)
Q Consensus 572 ~l~~~~p~~----~~~l~~L~~L~ls~N~l~ 598 (1009)
.++ .+|.. +..+++|++||+++|...
T Consensus 124 ~i~-~~~~~~~~~~~~l~~L~~Ld~~~n~~~ 153 (176)
T 1a9n_A 124 PVT-NKKHYRLYVIYKVPQVRVLDFQKVKLK 153 (176)
T ss_dssp GGG-GSTTHHHHHHHHCTTCSEETTEECCHH
T ss_pred CCC-CcHhHHHHHHHHCCccceeCCCcCCHH
Confidence 887 45664 788888888888888765
No 397
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=99.47 E-value=5.9e-13 Score=151.32 Aligned_cols=307 Identities=13% Similarity=0.054 Sum_probs=174.8
Q ss_pred CcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHhhCCccCCCCChhhccCC
Q 047768 185 PASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYLYGNRFTGSLPIEIGKNL 264 (1009)
Q Consensus 185 p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l 264 (1009)
..+|.++++|+.++|.++ ++.+...+|.++.+|+.+.+..+ +...-..+|.+...+..... +... .+....|.++
T Consensus 87 ~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~~~~~~~~--~~~~-~i~~~aF~~c 161 (394)
T 4fs7_A 87 EFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCDFKEITIP--EGVT-VIGDEAFATC 161 (394)
T ss_dssp TTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCCCSEEECC--TTCC-EECTTTTTTC
T ss_pred hhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeecccccccccC--cccc-ccchhhhccc
Confidence 445666666666666544 44445556666666666655443 22123333433322211111 1112 3444555566
Q ss_pred CcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCCCCCCCcchhhhcccccc
Q 047768 265 PNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGNGAANDLDFVDLLTNCTK 344 (1009)
Q Consensus 265 ~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~ 344 (1009)
++|+.+.+..+. ..+....|.++.+|+.+++..| ++.+...+|.+...|+.+.+..+...-. +......+
T Consensus 162 ~~L~~i~l~~~~-~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~~~i~--------~~~~~~~~ 231 (394)
T 4fs7_A 162 ESLEYVSLPDSM-ETLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSLYYLG--------DFALSKTG 231 (394)
T ss_dssp TTCCEEECCTTC-CEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTCCEEC--------TTTTTTCC
T ss_pred CCCcEEecCCcc-ceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCceEee--------hhhcccCC
Confidence 666666665432 3344556666666666666554 4445555555555555554443321110 01111223
Q ss_pred cceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecc
Q 047768 345 LQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLH 424 (1009)
Q Consensus 345 L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 424 (1009)
|+.+.+..+ ++......|.++.+|+.+.+..+... +....|..+..++.+...
T Consensus 232 -------------------------l~~i~ip~~-~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~~~l~~~~~~ 284 (394)
T 4fs7_A 232 -------------------------VKNIIIPDS-FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNCSGLKKVIYG 284 (394)
T ss_dssp -------------------------CCEEEECTT-CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTCTTCCEEEEC
T ss_pred -------------------------CceEEECCC-ceecccccccccccceeEEcCCCcce-eeccccccccccceeccC
Confidence 344444322 22233456677777777777766544 566677777777777776
Q ss_pred cccccCCCCcccccccccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhccceeeEecCCCccCCC
Q 047768 425 ANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGS 504 (1009)
Q Consensus 425 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~ 504 (1009)
.+.+. ...|..+.+|+.+.+.++ ++..-..+|.++++|+.+.+..+ ++ ..
T Consensus 285 ~~~i~---~~~F~~~~~L~~i~l~~~-i~~I~~~aF~~c~~L~~i~lp~~-v~-------------------------~I 334 (394)
T 4fs7_A 285 SVIVP---EKTFYGCSSLTEVKLLDS-VKFIGEEAFESCTSLVSIDLPYL-VE-------------------------EI 334 (394)
T ss_dssp SSEEC---TTTTTTCTTCCEEEECTT-CCEECTTTTTTCTTCCEECCCTT-CC-------------------------EE
T ss_pred ceeec---cccccccccccccccccc-cceechhhhcCCCCCCEEEeCCc-cc-------------------------EE
Confidence 65432 345667777777777654 55455567777777776655432 22 12
Q ss_pred CCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceE
Q 047768 505 LPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKEL 566 (1009)
Q Consensus 505 ~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L 566 (1009)
-...|.++.+|+.+++..| ++..-..+|.+|++|+.+++..| ++ .+..+|.+.++|+.+
T Consensus 335 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~lp~~-~~-~~~~~F~~c~~L~~I 393 (394)
T 4fs7_A 335 GKRSFRGCTSLSNINFPLS-LRKIGANAFQGCINLKKVELPKR-LE-QYRYDFEDTTKFKWI 393 (394)
T ss_dssp CTTTTTTCTTCCEECCCTT-CCEECTTTBTTCTTCCEEEEEGG-GG-GGGGGBCTTCEEEEE
T ss_pred hHHhccCCCCCCEEEECcc-ccEehHHHhhCCCCCCEEEECCC-CE-EhhheecCCCCCcEE
Confidence 2345778888999988877 66455678999999999999865 33 445678888888765
No 398
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.36 E-value=1.4e-12 Score=128.88 Aligned_cols=105 Identities=25% Similarity=0.240 Sum_probs=57.1
Q ss_pred cceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceecc
Q 047768 345 LQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLH 424 (1009)
Q Consensus 345 L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~ 424 (1009)
.+.+++++|+++. +|..+. ..++.|+|++|+|++..|..|.++++|++|+|++|+|++..+..|..+++|++|+|+
T Consensus 11 ~~~l~~s~n~l~~-ip~~~~---~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~ 86 (170)
T 3g39_A 11 GTTVDCSGKSLAS-VPTGIP---TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLN 86 (170)
T ss_dssp TTEEECTTSCCSS-CCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEeCCCCcCc-cCccCC---CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECC
Confidence 4566666666663 343332 345555555555555555555555555555555555555555555555555555555
Q ss_pred cccccCCCCcccccccccccccccCcccc
Q 047768 425 ANFLQGTIPSSLGNLTLLTYLSFGANNLQ 453 (1009)
Q Consensus 425 ~N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 453 (1009)
+|+|++..+..|.++++|++|+|++|.++
T Consensus 87 ~N~l~~~~~~~~~~l~~L~~L~L~~N~~~ 115 (170)
T 3g39_A 87 DNQLKSIPRGAFDNLKSLTHIWLLNNPWD 115 (170)
T ss_dssp SSCCCCCCTTTTTTCTTCCEEECCSSCBC
T ss_pred CCccCEeCHHHhcCCCCCCEEEeCCCCCC
Confidence 55555444444555555555555555554
No 399
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.34 E-value=1.1e-12 Score=146.52 Aligned_cols=130 Identities=19% Similarity=0.183 Sum_probs=105.8
Q ss_pred EecCCC-ccCCCCCCCccCCCCCCeeeccc-cccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCc
Q 047768 494 LDLSDN-LLNGSLPLGVGNLKSLVRLGIAR-NQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQN 571 (1009)
Q Consensus 494 L~Ls~N-~l~~~~p~~~~~l~~L~~L~ls~-N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 571 (1009)
++++++ .|+ .+|. +..+++|++|+|++ |+|++..|..|+++++|+.|+|++|+|++..|..|++|++|++|||++|
T Consensus 13 v~~~~~n~l~-~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 90 (347)
T 2ifg_A 13 LRCTRDGALD-SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFN 90 (347)
T ss_dssp EECCSSCCCT-TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSS
T ss_pred EEcCCCCCCC-ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCC
Confidence 788888 888 4888 99999999999996 9999888899999999999999999999999999999999999999999
Q ss_pred ccccccccccccccccCceecccccCcccCCCCCc--ccCccccccccCCCcCCCCC
Q 047768 572 NFSGQIPKYLENLSFLQYLNLSYNHFEGEVPTKGI--FKNKTGFSIVGNGKLCGGLD 626 (1009)
Q Consensus 572 ~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p~~~~--~~~~~~~~~~~n~~lc~~~~ 626 (1009)
+|++..|..|..++ |+.|+|++|+|.+.+...+. +.......+..+...|..+.
T Consensus 91 ~l~~~~~~~~~~~~-L~~l~l~~N~~~c~c~l~~~~~~~~~~~~~l~~~~~~C~~~~ 146 (347)
T 2ifg_A 91 ALESLSWKTVQGLS-LQELVLSGNPLHCSCALRWLQRWEEEGLGGVPEQKLQCHGQG 146 (347)
T ss_dssp CCSCCCSTTTCSCC-CCEEECCSSCCCCCGGGHHHHHHHHTTCSSCGGGCCCCSSSS
T ss_pred ccceeCHHHcccCC-ceEEEeeCCCccCCCccHHHHHHHHhCcccccccCCCCCCCh
Confidence 99976666777776 99999999999987663211 11111222334556676554
No 400
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.34 E-value=2.4e-12 Score=127.70 Aligned_cols=104 Identities=27% Similarity=0.308 Sum_probs=53.8
Q ss_pred ceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceeccc
Q 047768 346 QYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHA 425 (1009)
Q Consensus 346 ~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 425 (1009)
+.+++++|+++ .+|..+. ..|+.|+|++|+|++..|..|.++++|+.|+|++|+|++..+..|..+++|++|+|++
T Consensus 15 ~~l~~~~n~l~-~iP~~~~---~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~ 90 (174)
T 2r9u_A 15 TLVNCQNIRLA-SVPAGIP---TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLND 90 (174)
T ss_dssp SEEECCSSCCS-SCCSCCC---TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCS
T ss_pred cEEEeCCCCCC-ccCCCcC---CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCC
Confidence 45666666664 3343332 3455555555555555555555555555555555555544444445555555555555
Q ss_pred ccccCCCCcccccccccccccccCcccc
Q 047768 426 NFLQGTIPSSLGNLTLLTYLSFGANNLQ 453 (1009)
Q Consensus 426 N~l~~~~p~~~~~l~~L~~L~L~~N~l~ 453 (1009)
|+|++..+..|..+++|++|+|++|.+.
T Consensus 91 N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 91 NHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp SCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred CccceeCHHHhccccCCCEEEeCCCCcc
Confidence 5555433334555555555555555544
No 401
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=99.32 E-value=1.5e-12 Score=145.46 Aligned_cols=113 Identities=19% Similarity=0.302 Sum_probs=85.4
Q ss_pred CCCCC--CCccceeeCCCCCeEEEEEeecCCcccccCccccCCCCCCeeeecC-CcCCccCCccccCccccccccccccc
Q 047768 53 CVNLC--QHWTGVTCGRRNQRVTKLDLRNQSIGGILSPYVGNLSFLRYINIAD-NDFHGEIPDRIGNLFRLETLVLANNS 129 (1009)
Q Consensus 53 ~~~~c--~~w~gv~C~~~~~~v~~l~l~~~~l~~~~~~~~~~l~~L~~L~L~~-n~~~~~~p~~~~~l~~L~~L~Ls~N~ 129 (1009)
|+..| |.|.+|.|++. |++++ +|+ |..+++|++|+|++ |.|++..|..|++|++|++|+|++|+
T Consensus 1 cp~~c~~C~~~~v~~~~~-----------n~l~~-ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 67 (347)
T 2ifg_A 1 CPDACCPHGSSGLRCTRD-----------GALDS-LHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSG 67 (347)
T ss_dssp CCSSSCCSSSSCEECCSS-----------CCCTT-TTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSC
T ss_pred CCCcCccccCCEEEcCCC-----------CCCCc-cCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCc
Confidence 45556 57888888642 15655 666 99999999999996 99997777899999999999999999
Q ss_pred cCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecCccCC
Q 047768 130 FSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGDNQLT 181 (1009)
Q Consensus 130 l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~n~l~ 181 (1009)
|++..|..|+++++|++|+|++|++++ +|...+ ..+ .|+.|+|++|.+.
T Consensus 68 l~~~~~~~~~~l~~L~~L~l~~N~l~~-~~~~~~-~~~-~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 68 LRFVAPDAFHFTPRLSRLNLSFNALES-LSWKTV-QGL-SLQELVLSGNPLH 116 (347)
T ss_dssp CCEECTTGGGSCSCCCEEECCSSCCSC-CCSTTT-CSC-CCCEEECCSSCCC
T ss_pred cceeCHHHhcCCcCCCEEeCCCCccce-eCHHHc-ccC-CceEEEeeCCCcc
Confidence 999888899999988888888888773 333332 122 2555555555555
No 402
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.24 E-value=8.9e-14 Score=155.72 Aligned_cols=64 Identities=17% Similarity=0.233 Sum_probs=29.0
Q ss_pred CCCCCeeeccccccCCC----ccccccCCCCccEEEecCcccccc----cccccccccccceEcCCCccccc
Q 047768 512 LKSLVRLGIARNQFSGQ----IPVTLGACTSLEYVELQGNSFSGT----IPQSLSSLTSIKELDLSQNNFSG 575 (1009)
Q Consensus 512 l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~ 575 (1009)
.++|++|||++|.|++. ++..+..+++|+.|+|++|.|++. ++..+...++|++|||++|.|++
T Consensus 182 ~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~ 253 (372)
T 3un9_A 182 NTSVTHLSLLHTGLGDEGLELLAAQLDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSS 253 (372)
T ss_dssp CSSCCEEECTTSSCHHHHHHHHHHHGGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCH
T ss_pred CCCcCEEeCCCCCCCcHHHHHHHHHHhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCH
Confidence 34455555555555421 133344444555555555555432 22223333455555555555543
No 403
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.23 E-value=4.3e-11 Score=135.90 Aligned_cols=109 Identities=16% Similarity=0.221 Sum_probs=53.4
Q ss_pred cccCCChHHHHHhhCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccc
Q 047768 235 SVYNISSLVEIYLYGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKD 314 (1009)
Q Consensus 235 ~~~~l~~L~~L~L~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~ 314 (1009)
+|.++.+|+.+.+..+ ++ .|+...|.+..+|+.+.+..+ +..+....|.++.+|+.+.+..+ ++.+...+|.. ..
T Consensus 109 aF~~c~~L~~i~~~~~-~~-~I~~~aF~~c~~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~-~~ 183 (394)
T 4gt6_A 109 AFMFCSELTDIPILDS-VT-EIDSEAFHHCEELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTG-TA 183 (394)
T ss_dssp TTTTCTTCCBCGGGTT-CS-EECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTT-CC
T ss_pred hchhcccceeeccCCc-cc-eehhhhhhhhcccccccccce-eeeecccceecccccccccccce-eeEeccccccc-cc
Confidence 3444444444443322 33 455555556666666666432 33344556666666666666543 44455555543 34
Q ss_pred cccccccccccCCCCCCCcchhhhcccccccceEEccCCCC
Q 047768 315 LSMLGLATNFLGNGAANDLDFVDLLTNCTKLQYLYLADNGF 355 (1009)
Q Consensus 315 L~~L~L~~N~l~~~~~~~~~~~~~l~~l~~L~~L~L~~N~l 355 (1009)
|+.+.+..+... +. ..+|.++.+++......+..
T Consensus 184 l~~i~ip~~~~~-i~------~~af~~c~~l~~~~~~~~~~ 217 (394)
T 4gt6_A 184 LTQIHIPAKVTR-IG------TNAFSECFALSTITSDSESY 217 (394)
T ss_dssp CSEEEECTTCCE-EC------TTTTTTCTTCCEEEECCSSS
T ss_pred eeEEEECCcccc-cc------cchhhhccccceeccccccc
Confidence 555554433211 11 12345556666655554443
No 404
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.20 E-value=5.3e-13 Score=149.40 Aligned_cols=162 Identities=16% Similarity=0.199 Sum_probs=107.0
Q ss_pred cccccceecccccccCCCCcccccc-----cccccccccCcccccccCCCCCCCCCccccccCCCCccCCCchhhhhhcc
Q 047768 415 LKNLQLLHLHANFLQGTIPSSLGNL-----TLLTYLSFGANNLQGNIPFSLGNCKNLMFFFAPRNKLTGALPQQILEITT 489 (1009)
Q Consensus 415 l~~L~~L~L~~N~l~~~~p~~~~~l-----~~L~~L~L~~N~l~~~~p~~~~~l~~L~~l~l~~N~l~~~~p~~~~~~~~ 489 (1009)
+++|+.|+|++|.++......+... ++|++|+|++|.++... ...+.....
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~------------------------~~~l~~~L~ 126 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAG------------------------LRTLLPVFL 126 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHH------------------------HHHTHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHH------------------------HHHHHHHHH
Confidence 3456677777777664333333222 45666666666554321 112222112
Q ss_pred ceeeEecCCCccCCCCCCCc-----cCCCCCCeeeccccccCC----CccccccCCCCccEEEecCcccccc----cccc
Q 047768 490 LSLSLDLSDNLLNGSLPLGV-----GNLKSLVRLGIARNQFSG----QIPVTLGACTSLEYVELQGNSFSGT----IPQS 556 (1009)
Q Consensus 490 ~~~~L~Ls~N~l~~~~p~~~-----~~l~~L~~L~ls~N~l~~----~~p~~~~~l~~L~~L~L~~N~l~~~----~p~~ 556 (1009)
....|+|++|.++......+ ...++|++|+|++|.|+. .++..+..+++|++|+|++|+|++. ++..
T Consensus 127 ~L~~L~Ls~n~l~~~~~~~L~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~ 206 (372)
T 3un9_A 127 RARKLGLQLNSLGPEACKDLRDLLLHDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQ 206 (372)
T ss_dssp TEEEEECCSSCCCHHHHHHHHHHHHSTTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHH
T ss_pred hccHhhcCCCCCCHHHHHHHHHHHHhcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHH
Confidence 23346666666653222222 235789999999999974 2455567889999999999999863 3667
Q ss_pred cccccccceEcCCCccccc----ccccccccccccCceecccccCccc
Q 047768 557 LSSLTSIKELDLSQNNFSG----QIPKYLENLSFLQYLNLSYNHFEGE 600 (1009)
Q Consensus 557 ~~~l~~L~~L~Ls~N~l~~----~~p~~~~~l~~L~~L~ls~N~l~g~ 600 (1009)
+...++|++|||++|.|++ .++..+...++|++|||++|+++..
T Consensus 207 L~~~~~L~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i~~~ 254 (372)
T 3un9_A 207 LDRNRQLQELNVAYNGAGDTAALALARAAREHPSLELLHLYFNELSSE 254 (372)
T ss_dssp GGGCSCCCEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSCCHH
T ss_pred HhcCCCcCeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCCCHH
Confidence 7788899999999999985 3455566779999999999998643
No 405
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=99.18 E-value=1.5e-10 Score=131.44 Aligned_cols=86 Identities=15% Similarity=0.183 Sum_probs=47.7
Q ss_pred CCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcccccccccccccccccceEcCCCcccccccccccccccc
Q 047768 507 LGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSF 586 (1009)
Q Consensus 507 ~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~ 586 (1009)
..|.++.+|+.++|..+ ++..-..+|.+|.+|+.+.+..+ ++..-..+|.++++|+.+++.+|.... ..+.....
T Consensus 305 ~aF~~c~~L~~i~lp~~-v~~I~~~aF~~C~~L~~i~ip~s-v~~I~~~aF~~C~~L~~i~~~~~~~~~---~~~~~~~~ 379 (394)
T 4gt6_A 305 SVFAGCISLKSIDIPEG-ITQILDDAFAGCEQLERIAIPSS-VTKIPESAFSNCTALNNIEYSGSRSQW---NAISTDSG 379 (394)
T ss_dssp TTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCEEEECTT-CCBCCGGGGTTCTTCCEEEESSCHHHH---HTCBCCCC
T ss_pred eeecCCCCcCEEEeCCc-ccEehHhHhhCCCCCCEEEECcc-cCEEhHhHhhCCCCCCEEEECCceeeh---hhhhccCC
Confidence 34666677777777654 44344556777777777777544 554445667777777777777665431 35556666
Q ss_pred cCceecccccC
Q 047768 587 LQYLNLSYNHF 597 (1009)
Q Consensus 587 L~~L~ls~N~l 597 (1009)
|+.+.+..|.+
T Consensus 380 L~~i~i~~~~~ 390 (394)
T 4gt6_A 380 LQNLPVAPGSI 390 (394)
T ss_dssp C----------
T ss_pred CCEEEeCCCCE
Confidence 66666655543
No 406
>3tm0_A Aminoglycoside 3'-phosphotransferase; protein kinase, phosphorylation, transferase-antibiotic COMP; HET: ANP B31; 2.10A {Enterococcus faecalis} SCOP: d.144.1.6 PDB: 2b0q_A* 1l8t_A* 3q2j_A* 1j7i_A* 1j7u_A* 3h8p_A* 1j7l_A* 2bkk_A*
Probab=99.11 E-value=2.4e-10 Score=121.88 Aligned_cols=148 Identities=18% Similarity=0.160 Sum_probs=113.9
Q ss_pred HHHHHhccCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-CCCcceEEeeeeccccC
Q 047768 695 ELSKATNEFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRNLIKIVTICSSIDFK 773 (1009)
Q Consensus 695 ~~~~~~~~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~ 773 (1009)
.+......|.+....+.|+.+.||++.. .++.+++|+...........+.+|+++++.+. |..+.++++++..
T Consensus 8 ~l~~~l~~~~~~~~~~g~s~~~v~~~~~--~~~~~vlK~~~~~~~~~~~~~~~E~~~l~~l~~~~~vP~v~~~~~~---- 81 (263)
T 3tm0_A 8 ELKKLIEKYRCVKDTEGMSPAKVYKLVG--ENENLYLKMTDSRYKGTTYDVEREKDMMLWLEGKLPVPKVLHFERH---- 81 (263)
T ss_dssp HHHHHHTTSEEEECCSCCSSSEEEEEEC--SSCEEEEEEECGGGTTSTTCHHHHHHHHHHHTTTSCCCCEEEEEEE----
T ss_pred HHHHHhccceeEeeccCCCCCeEEEEEC--CCCcEEEEeCCcccCCCHHHHHHHHHHHHHHhcCCCCCeEEEEEec----
Confidence 3445566788888899999999999975 36789999986533233456899999999984 6778888888653
Q ss_pred CCceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhc-------------------------
Q 047768 774 GVDFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHH------------------------- 828 (1009)
Q Consensus 774 ~~~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~------------------------- 828 (1009)
.+..++||||++|.++.+.... ..+...++.+++++++.||+.
T Consensus 82 -~~~~~lv~e~i~G~~l~~~~~~-----------~~~~~~~~~~l~~~l~~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~ 149 (263)
T 3tm0_A 82 -DGWSNLLMSEADGVLCSEEYED-----------EQSPEKIIELYAECIRLFHSIDISDCPYTNSLDSRLAELDYLLNND 149 (263)
T ss_dssp -TTEEEEEEECCSSEEHHHHCCT-----------TTCHHHHHHHHHHHHHHHHHSCCTTCSCBCCHHHHHHHHHHHHHTT
T ss_pred -CCceEEEEEecCCeehhhccCC-----------cccHHHHHHHHHHHHHHHhCCCcccCCCcchHHHHHHHHHHHHhcc
Confidence 2577999999999999876321 112346888999999999981
Q ss_pred -------------------------------CCCCceecCCCCCceeeCCCCceEEecccccc
Q 047768 829 -------------------------------CQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAK 860 (1009)
Q Consensus 829 -------------------------------~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~ 860 (1009)
..+.++|+|+++.||+++++..+.|+||+.+.
T Consensus 150 ~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~lIDwe~a~ 212 (263)
T 3tm0_A 150 LADVDCENWEEDTPFKDPRELYDFLKTEKPEEELVFSHGDLGDSNIFVKDGKVSGFIDLGRSG 212 (263)
T ss_dssp CSCCSGGGGSTTCSSSSHHHHHHHHHHCCCCCCEEEECSSCCTTSEEEETTEEEEECCCTTCE
T ss_pred ccccccccccccccCCCHHHHHHHHHhcCCCCCceEECCCCCcCcEEEECCcEEEEEEchhcc
Confidence 01358999999999999877667899999775
No 407
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.87 E-value=3.5e-11 Score=126.18 Aligned_cols=144 Identities=15% Similarity=0.170 Sum_probs=67.7
Q ss_pred CccceeeCCCCCeEEEEEeec---CCcccccCc-cccCCCCCCeeeecCCcCCccCCc-cccCcccccc--ccccccccC
Q 047768 59 HWTGVTCGRRNQRVTKLDLRN---QSIGGILSP-YVGNLSFLRYINIADNDFHGEIPD-RIGNLFRLET--LVLANNSFS 131 (1009)
Q Consensus 59 ~w~gv~C~~~~~~v~~l~l~~---~~l~~~~~~-~~~~l~~L~~L~L~~n~~~~~~p~-~~~~l~~L~~--L~Ls~N~l~ 131 (1009)
.|.|+.|+..+.+|+.+...+ ..+.+.+.+ .+..++. .|....|.-++.++- .|...+.|.. ++++.|+..
T Consensus 79 ~~~g~i~~~~~~ki~~~v~~~~~~~~~~~~l~~~~~~~Lk~--~l~~ryn~~~~~LdLs~l~~dp~L~~~~l~l~~N~~~ 156 (267)
T 3rw6_A 79 AVNYKILDRENRRISIIINSSAPPHTILNELKPEQVEQLKL--IMSKRYDGSQQALDLKGLRSDPDLVAQNIDVVLNRRS 156 (267)
T ss_dssp HTTSSCBCTTSCBCCCEEEECCCCHHHHTSCCHHHHHHHHH--HHHHTEETTTTEEECTTGGGCHHHHHTTCCCCTTSHH
T ss_pred hcCcEEECCCCCEEEEEEecCCCcccccccCCHHHHHHHHH--HHHhccchhccccCHHHcCCCcchhhcCccccCCHHH
Confidence 799999998777887776655 233344432 1222221 223333333333322 2555555555 556666322
Q ss_pred ---CCCCCCCcCCCcCcEEecccccccC--CCchHHhhhccCCcCeEeecCccCCCCCCcccCCcc--ccceeecccCcc
Q 047768 132 ---GRIPTNLSHCSKLITFSAHRNNLVG--EIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLS--ALRVIDIRTNRL 204 (1009)
Q Consensus 132 ---~~~p~~l~~l~~L~~L~l~~n~l~~--~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~--~L~~L~L~~N~l 204 (1009)
+.++....++++|++|+|++|++++ .+|..+ ..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+
T Consensus 157 ~~~~~l~i~~~~l~~L~~L~Ls~N~l~~l~~l~~~~--~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl 232 (267)
T 3rw6_A 157 CMAATLRIIEENIPELLSLNLSNNRLYRLDDMSSIV--QKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSL 232 (267)
T ss_dssp HHHHHHHHHHHHCTTCCEEECTTSCCCCCGGGTTHH--HHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTT
T ss_pred HHHHHHHHHHhhCCCCCEEECCCCCCCCCccchhHH--hhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcC
Confidence 1111112344555555555555554 222222 3445555555555555533 1222222 455555555555
Q ss_pred cCCC
Q 047768 205 WGKI 208 (1009)
Q Consensus 205 ~~~~ 208 (1009)
.+..
T Consensus 233 ~~~~ 236 (267)
T 3rw6_A 233 CDTF 236 (267)
T ss_dssp GGGC
T ss_pred cccc
Confidence 4433
No 408
>1nd4_A Aminoglycoside 3'-phosphotransferase; protein kinase, ATPase, kanamycin; HET: KAN; 2.10A {Klebsiella pneumoniae} SCOP: d.144.1.6
Probab=98.84 E-value=6.6e-09 Score=110.51 Aligned_cols=136 Identities=15% Similarity=0.112 Sum_probs=96.4
Q ss_pred cCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCC--cceEEeeeeccccCCCceEE
Q 047768 702 EFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRN--LIKIVTICSSIDFKGVDFKA 779 (1009)
Q Consensus 702 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~~~~~~ 779 (1009)
.+.+....+.|..+.||++.. .+|+.+++|+.... ....+.+|+++++.+.+.+ +.+++++... .+..+
T Consensus 21 ~~~~~~~~~gg~~~~v~~~~~-~~g~~~vlK~~~~~---~~~~~~~E~~~l~~l~~~~~~vP~~~~~~~~-----~~~~~ 91 (264)
T 1nd4_A 21 GYDWAQQTIGCSDAAVFRLSA-QGRPVLFVKTDLSG---ALNELQDEAARLSWLATTGVPCAAVLDVVTE-----AGRDW 91 (264)
T ss_dssp TCEEEECSCTTSSCEEEEEEC-TTSCCEEEEEECSC---TTSCHHHHHHHHHHHHTTTCCBCCEEEEEEC-----SSCEE
T ss_pred CCceEecccCCCCceEEEEec-CCCCeEEEEeCCcc---cchhhhHHHHHHHHHHhCCCCCCeEEEeccC-----CCCCE
Confidence 444433334566799999965 46778999987533 2356789999999986544 4557776543 24579
Q ss_pred EEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcC------------------------------
Q 047768 780 LVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHC------------------------------ 829 (1009)
Q Consensus 780 lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~------------------------------ 829 (1009)
+||||++|.++. ... .+ ...++.++++.++.||+..
T Consensus 92 ~v~e~i~G~~l~--~~~---------~~---~~~~~~~l~~~l~~lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 157 (264)
T 1nd4_A 92 LLLGEVPGQDLL--SSH---------LA---PAEKVSIMADAMRRLHTLDPATCPFDHQAKHRIERARTRMEAGLVDQDD 157 (264)
T ss_dssp EEEECCSSEETT--TSC---------CC---HHHHHHHHHHHHHHHTTSCGGGCCCBCCHHHHHHHHHHHHHTTCCCTTS
T ss_pred EEEEecCCcccC--cCc---------CC---HhHHHHHHHHHHHHHhCCCCCCCCCchHHHHHHHHHHHHHhcCCccchh
Confidence 999999998873 211 11 1256777888888888641
Q ss_pred -------------------------CCCceecCCCCCceeeCCCCceEEecccccc
Q 047768 830 -------------------------QPPIVHGDLKPSNVLLDHDMVAHVSDFGLAK 860 (1009)
Q Consensus 830 -------------------------~~~ivHrdlk~~Nill~~~~~~kl~DfGla~ 860 (1009)
.+.++|+|++|.||+++.++.+.|+|||.+.
T Consensus 158 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgDl~~~Nil~~~~~~~~liD~~~a~ 213 (264)
T 1nd4_A 158 LDEEHQGLAPAELFARLKARMPDGEDLVVTHGDACLPNIMVENGRFSGFIDCGRLG 213 (264)
T ss_dssp CCGGGTTCCHHHHHHHHHHTCCSSCCEEEECSSCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhccCccHHHHHHHHHHhcCCCCCeEEECCCCCCCcEEEECCcEEEEEcchhcc
Confidence 1239999999999999887777899999875
No 409
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.81 E-value=2.2e-08 Score=112.94 Aligned_cols=165 Identities=12% Similarity=0.091 Sum_probs=78.8
Q ss_pred cCcCccCEEEccCCCCCCCCCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCCCccc
Q 047768 389 ANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCKNLMF 468 (1009)
Q Consensus 389 ~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~ 468 (1009)
....++..+.+..+.-. .....+....+|+.+.+..+ ++......|.++..|+.+.+..+ ++..-...|.++.+|+.
T Consensus 191 ~~~~~~~~~~~~~~~~~-i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~I~~~aF~~~~~l~~ 267 (379)
T 4h09_A 191 PAAKTGTEFTIPSTVKT-VTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTSIGSFLLQNCTALKT 267 (379)
T ss_dssp CTTCCCSEEECCTTCCE-ECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCEECTTTTTTCTTCCE
T ss_pred cccccccccccccceeE-Eeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccEeCccccceeehhcc
Confidence 33344444444332221 33444555555665555443 22233444555555555555443 33233344444444443
Q ss_pred cccCCCCccCCCchhhhhhccceeeEecCCCccCCCCCCCccCCCCCCeeeccccccCCCccccccCCCCccEEEecCcc
Q 047768 469 FFAPRNKLTGALPQQILEITTLSLSLDLSDNLLNGSLPLGVGNLKSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNS 548 (1009)
Q Consensus 469 l~l~~N~l~~~~p~~~~~~~~~~~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~ 548 (1009)
+.+..+ +...-...|.++.+|+.+++.++.++..-..+|.+|.+|+.+.|..+
T Consensus 268 i~l~~~--------------------------i~~i~~~aF~~c~~L~~i~l~~~~i~~I~~~aF~~c~~L~~i~lp~~- 320 (379)
T 4h09_A 268 LNFYAK--------------------------VKTVPYLLCSGCSNLTKVVMDNSAIETLEPRVFMDCVKLSSVTLPTA- 320 (379)
T ss_dssp EEECCC--------------------------CSEECTTTTTTCTTCCEEEECCTTCCEECTTTTTTCTTCCEEECCTT-
T ss_pred cccccc--------------------------ceeccccccccccccccccccccccceehhhhhcCCCCCCEEEcCcc-
Confidence 332211 11111223555666666666666665444556666666666666543
Q ss_pred cccccccccccccccceEcCCCcccccccccccccc
Q 047768 549 FSGTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENL 584 (1009)
Q Consensus 549 l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l 584 (1009)
++..-..+|.++++|+.+.+..+ ++..-..+|.+.
T Consensus 321 l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c 355 (379)
T 4h09_A 321 LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGS 355 (379)
T ss_dssp CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTS
T ss_pred ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCC
Confidence 44344456666666666666543 442223444443
No 410
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.79 E-value=3.3e-10 Score=125.54 Aligned_cols=158 Identities=11% Similarity=0.125 Sum_probs=99.9
Q ss_pred CCeEEEEEeecCCccc-c-------cCccccCCCCCCeeeecCCcCC---------ccCCccccCccccccccccccccC
Q 047768 69 NQRVTKLDLRNQSIGG-I-------LSPYVGNLSFLRYINIADNDFH---------GEIPDRIGNLFRLETLVLANNSFS 131 (1009)
Q Consensus 69 ~~~v~~l~l~~~~l~~-~-------~~~~~~~l~~L~~L~L~~n~~~---------~~~p~~~~~l~~L~~L~Ls~N~l~ 131 (1009)
..+|+.|.+...++.| . +..++..+++|+.|.+.++... +.++..+..+++|+.|+|++|.-.
T Consensus 106 ~~~v~~L~lg~~~~~~~~~~~~~~~L~~s~~~l~~L~~L~l~~~~~e~~~is~~~~~~L~~ll~~~P~L~~L~L~g~~~l 185 (362)
T 2ra8_A 106 LPSLKQITIGXWGYEGEDCSDIADGIVENKEKFAHFEGLFWGDIDFEEQEISWIEQVDLSPVLDAMPLLNNLKIKGTNNL 185 (362)
T ss_dssp GGGCSEEEECCCCSSSCCSHHHHHHHHTTHHHHTTCSEEEECCCCTTTCCGGGCBCCBCHHHHHTCTTCCEEEEECCBTC
T ss_pred chhcceEEEcccccCCCcHHHHHHHHHHhhhhcchhhheeecCcchhhcccccccccCHHHHHhcCCCCcEEEEeCCCCc
Confidence 3478888888766553 2 2344667889999999765431 235556678899999999988311
Q ss_pred CCCCCCCcCCCcCcEEecccccccCCCchHHhhhccCCcCeEeecC--ccCCCC-----CCccc--CCccccceeecccC
Q 047768 132 GRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRLFNLQGLSVGD--NQLTGQ-----LPASI--GNLSALRVIDIRTN 202 (1009)
Q Consensus 132 ~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l~~L~~L~L~~--n~l~~~-----~p~~~--~~l~~L~~L~L~~N 202 (1009)
.+|. +. +++|++|++..+.+.......+....+++|++|+|+. |...+. +...+ ..+++|++|+|++|
T Consensus 186 -~l~~-~~-~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~~~l~~~l~~~~~p~Lr~L~L~~~ 262 (362)
T 2ra8_A 186 -SIGK-KP-RPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDMNVFRPLFSKDRFPNLKWLGIVDA 262 (362)
T ss_dssp -BCCS-CB-CTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCGGGTGGGSCTTTCTTCCEEEEESC
T ss_pred -eecc-cc-CCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhHHHHHHHHhcCCCCCcCEEeCCCC
Confidence 2343 43 8899999998888765444445444688899988853 221111 11122 24677888888777
Q ss_pred cccCCCCcccc---cccccccccccCccCC
Q 047768 203 RLWGKIPITLS---QLTSLAYLHVGDNHFS 229 (1009)
Q Consensus 203 ~l~~~~p~~~~---~l~~L~~L~L~~N~l~ 229 (1009)
.+....+..+. .+++|++|+|+.|.++
T Consensus 263 ~i~~~~~~~la~a~~~~~L~~LdLs~n~L~ 292 (362)
T 2ra8_A 263 EEQNVVVEMFLESDILPQLETMDISAGVLT 292 (362)
T ss_dssp TTHHHHHHHHHHCSSGGGCSEEECCSSCCB
T ss_pred CCchHHHHHHHhCccCCCCCEEECCCCCCC
Confidence 77543333332 3566777777777665
No 411
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.77 E-value=3.5e-09 Score=117.23 Aligned_cols=84 Identities=15% Similarity=0.273 Sum_probs=56.3
Q ss_pred CCCCCCeeeccccccCCCccccc---cCCCCccEEEecCcccccc----cccccccccccceEcCCCccccccccccccc
Q 047768 511 NLKSLVRLGIARNQFSGQIPVTL---GACTSLEYVELQGNSFSGT----IPQSLSSLTSIKELDLSQNNFSGQIPKYLEN 583 (1009)
Q Consensus 511 ~l~~L~~L~ls~N~l~~~~p~~~---~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~ 583 (1009)
.+++|++|+|++|.+.+..+..+ ..+++|+.|+|+.|.|++. ++..+.++++|+.|+|++|.|+...-..+..
T Consensus 250 ~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~i~d~~~~~l~~ 329 (362)
T 2ra8_A 250 RFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQK 329 (362)
T ss_dssp TCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBBCCHHHHHHHHH
T ss_pred CCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCcCCHHHHHHHHH
Confidence 46788888888888765443333 2477888888888888764 3444456788888888888887543333332
Q ss_pred -ccccCceeccccc
Q 047768 584 -LSFLQYLNLSYNH 596 (1009)
Q Consensus 584 -l~~L~~L~ls~N~ 596 (1009)
+ ...+++++|+
T Consensus 330 al--g~~~~~~~~~ 341 (362)
T 2ra8_A 330 SL--PMKIDVSDSQ 341 (362)
T ss_dssp HC--CSEEECCSBC
T ss_pred Hc--CCEEEecCCc
Confidence 2 2457777776
No 412
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.76 E-value=7.6e-08 Score=108.44 Aligned_cols=317 Identities=14% Similarity=0.126 Sum_probs=151.5
Q ss_pred ccccCCCCCCeeeecCCcCCccCCccccCccccccccccccccCCCCCCCCcCCCcCcEEecccccccCCCchHHhhhcc
Q 047768 88 PYVGNLSFLRYINIADNDFHGEIPDRIGNLFRLETLVLANNSFSGRIPTNLSHCSKLITFSAHRNNLVGEIPEELISRRL 167 (1009)
Q Consensus 88 ~~~~~l~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~l~~n~l~~~~p~~~~~~~l 167 (1009)
|++..-.+|+.+.+.. .++..-..+|.++++|+.++|..+ ++..-...|.++ +|+.+.+..+ +. .++...|..
T Consensus 40 ~~~~~~~~i~~v~ip~-~vt~Ig~~aF~~C~~L~~I~lp~~-v~~Ig~~aF~~c-~l~~i~~~~~-l~-~I~~~aF~~-- 112 (379)
T 4h09_A 40 PWYKDRDRISEVRVNS-GITSIGEANFNSCYNMTKVTVAST-VTSIGDGAFADT-KLQSYTGMER-VK-KFGDYVFQG-- 112 (379)
T ss_dssp TTGGGGGGCSEEEECT-TEEEECTTTTTTCTTCCEEEECTT-CCEECTTTTTTC-CCCEEEECTT-CC-EECTTTTTT--
T ss_pred cccccccCCEEEEeCC-CccChHHHHhhCCCCCCEEEeCCc-ceEechhhhcCC-CCceEECCce-ee-Eeccceecc--
Confidence 4455566677777753 455333456777888888877644 553344456665 5666655432 22 333333321
Q ss_pred CCcCeEeecCccCCCCCCcccCCccccceeecccCcccCCCCcccccccccccccccCccCCCCCCCcccCCChHHHHHh
Q 047768 168 FNLQGLSVGDNQLTGQLPASIGNLSALRVIDIRTNRLWGKIPITLSQLTSLAYLHVGDNHFSGTIPPSVYNISSLVEIYL 247 (1009)
Q Consensus 168 ~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L 247 (1009)
.+|+.+.+.++ ++......|.+. +|+.+.+..+ ++......|....+++...+..+.........+.
T Consensus 113 ~~L~~i~lp~~-~~~i~~~~F~~~-~l~~~~~~~~-v~~i~~~~f~~~~~l~~~~~~~~~~~~~~~~~~~---------- 179 (379)
T 4h09_A 113 TDLDDFEFPGA-TTEIGNYIFYNS-SVKRIVIPKS-VTTIKDGIGYKAENLEKIEVSSNNKNYVAENYVL---------- 179 (379)
T ss_dssp CCCSEEECCTT-CCEECTTTTTTC-CCCEEEECTT-CCEECSCTTTTCTTCCEEEECTTCSSEEEETTEE----------
T ss_pred CCcccccCCCc-cccccccccccc-eeeeeeccce-eeccccchhcccccccccccccccceeeccccee----------
Confidence 35666666544 222333344443 4444444432 3334455566666666655554432211000000
Q ss_pred hCCccCCCCChhhccCCCcccceeccccccCCCCCCCcCcccccccccccccccccccccccccccccccccccccccCC
Q 047768 248 YGNRFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAENQFRGQVSINFNGLKDLSMLGLATNFLGN 327 (1009)
Q Consensus 248 ~~N~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~~~~~~~f~~l~~L~~L~L~~N~l~~ 327 (1009)
.+... .+ ...+.....+..+.+..+ ........|....+|+.+.+..+ +..+...+|.+...|+.+.+..+ +..
T Consensus 180 -~~~~~-~~-~~~~~~~~~~~~~~~~~~-~~~i~~~~f~~~~~l~~i~~~~~-~~~i~~~~f~~~~~L~~i~lp~~-v~~ 253 (379)
T 4h09_A 180 -YNKNK-TI-LESYPAAKTGTEFTIPST-VKTVTAYGFSYGKNLKKITITSG-VTTLGDGAFYGMKALDEIAIPKN-VTS 253 (379)
T ss_dssp -EETTS-SE-EEECCTTCCCSEEECCTT-CCEECTTTTTTCSSCSEEECCTT-CCEECTTTTTTCSSCCEEEECTT-CCE
T ss_pred -ccccc-ce-eccccccccccccccccc-eeEEeecccccccccceeeeccc-eeEEccccccCCccceEEEcCCC-ccE
Confidence 00000 00 001111222222222221 11133344555555555555433 33333444444444444433322 111
Q ss_pred CCCCCcchhhhcccccccceEEccCCCCCCcCchhhhhhcccceEEEcCCCccccCCCccccCcCccCEEEccCCCCCCC
Q 047768 328 GAANDLDFVDLLTNCTKLQYLYLADNGFGGVLPHSIANLSTALIDFNLGKNQIYGTIPPGIANLVNLNSLRMEANRLTGT 407 (1009)
Q Consensus 328 ~~~~~~~~~~~l~~l~~L~~L~L~~N~l~~~~p~~~~~l~~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~ 407 (1009)
++. .+|.++.+ |+.+.+..+ +.......|.++++|+.+.+.++.++.+
T Consensus 254 I~~------~aF~~~~~-------------------------l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I 301 (379)
T 4h09_A 254 IGS------FLLQNCTA-------------------------LKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETL 301 (379)
T ss_dssp ECT------TTTTTCTT-------------------------CCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEE
T ss_pred eCc------cccceeeh-------------------------hcccccccc-ceecccccccccccccccccccccccee
Confidence 111 12333333 344444322 3323445677777777777777777766
Q ss_pred CCCCcCCcccccceecccccccCCCCcccccccccccccccCcccccccCCCCCCCC
Q 047768 408 IPHVIGELKNLQLLHLHANFLQGTIPSSLGNLTLLTYLSFGANNLQGNIPFSLGNCK 464 (1009)
Q Consensus 408 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~ 464 (1009)
...+|.++.+|+.+.|..+ ++.+...+|.++.+|+.+.+..+ ++..-..+|.++.
T Consensus 302 ~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~C~~L~~i~ip~~-v~~I~~~aF~~c~ 356 (379)
T 4h09_A 302 EPRVFMDCVKLSSVTLPTA-LKTIQVYAFKNCKALSTISYPKS-ITLIESGAFEGSS 356 (379)
T ss_dssp CTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTSS
T ss_pred hhhhhcCCCCCCEEEcCcc-ccEEHHHHhhCCCCCCEEEECCc-cCEEchhHhhCCC
Confidence 6677777777777777644 55445566777777777776544 4433444555543
No 413
>3dxp_A Putative acyl-COA dehydrogenase; protein kinase-like fold, structural genomics, joint center structural genomics, JCSG; 2.32A {Ralstonia eutropha JMP134}
Probab=98.71 E-value=2.7e-08 Score=111.17 Aligned_cols=145 Identities=15% Similarity=0.221 Sum_probs=105.5
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEee--cccc-cchHHHHHHHHHHHhcC--CCCcceEEeeeeccccCCCceEEE
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVIN--LEQK-GGSKSFAAECEALRSIR--HRNLIKIVTICSSIDFKGVDFKAL 780 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~--~~~~-~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~~~~~~~~~l 780 (1009)
.+.++.|.++.||+.... +..+++|+.. .... .....+.+|+++++.+. +..+.++++++..... .+..++
T Consensus 43 ~~~l~~G~sn~~y~v~~~--~~~~vlr~~~~p~~~~~~~~~~~~~E~~~l~~L~~~~vpvP~~~~~~~~~~~--~g~~~~ 118 (359)
T 3dxp_A 43 VEQFKGGQSNPTFKLVTP--GQTYVMRAKPGPKSKLLPSAHAIEREYRVMDALAGTDVPVAKMYALCEDESV--IGRAFY 118 (359)
T ss_dssp EEECCC-CCSCEEEEECS--SCEEEEECCCC----------CHHHHHHHHHHHTTSSSCCCCEEEEECCTTT--TSSCEE
T ss_pred EEEcCCcccceEEEEEEC--CceEEEEeCCCCCCCCCCcHHHHHHHHHHHHHhhcCCCCCCcEEEECCCCCc--cCCeEE
Confidence 467899999999998764 5678888765 2221 12356888999999996 4567888888764321 134689
Q ss_pred EEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcC-------------------------------
Q 047768 781 VYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHC------------------------------- 829 (1009)
Q Consensus 781 v~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~------------------------------- 829 (1009)
||||+++..+.+.. ...++..++..++.++++.|+.||+..
T Consensus 119 vme~v~G~~l~~~~--------~~~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 190 (359)
T 3dxp_A 119 IMEFVSGRVLWDQS--------LPGMSPAERTAIYDEMNRVIAAMHTVDYQAIGLGDYGKPGNYFQRQIERWTKQYKLSE 190 (359)
T ss_dssp EEECCCCBCCCCTT--------CTTCCHHHHHHHHHHHHHHHHHHHHSCTTTTTCTTSSCCSCHHHHHHHHHHHHHHHHC
T ss_pred EEEecCCeecCCCc--------cccCCHHHHHHHHHHHHHHHHHHhCCCchhccccccCCCCCchHHHHHHHHHHHHhcC
Confidence 99999987764311 113678888899999999999999731
Q ss_pred ------------------------CCCceecCCCCCceeeCCCCc--eEEecccccccc
Q 047768 830 ------------------------QPPIVHGDLKPSNVLLDHDMV--AHVSDFGLAKFL 862 (1009)
Q Consensus 830 ------------------------~~~ivHrdlk~~Nill~~~~~--~kl~DfGla~~~ 862 (1009)
.+.++|+|+++.||+++.++. +.|+||+.+..-
T Consensus 191 ~~~~~~~~~~~~~l~~~~~~~~~~~~~lvHgD~~~~Nil~~~~~~~v~~viDwe~a~~g 249 (359)
T 3dxp_A 191 TESIPAMDSLMDWLPQHIPQEDADLTSIVHGDYRLDNLMFHPTEPRVLAVLDWELSTLG 249 (359)
T ss_dssp CSCCHHHHHHHHHGGGCCCSTTSSCCEEECSSCSGGGEEECSSSSCEEEECCCTTCEEE
T ss_pred CcCChHHHHHHHHHHhcCCCccCCCceEEeCCCCCCcEEEeCCCCcEEEEECccccccC
Confidence 247999999999999997753 699999988743
No 414
>3sg8_A APH(2'')-ID; antibiotic resistance enzyme, transferase, aminoglycoside, phosphorylation, transferase-antibiotic complex; HET: TOY; 1.80A {Enterococcus casseliflavus} PDB: 3sg9_A* 3n4v_A 3n4t_A 3n4u_A 3r81_A* 3r80_A* 3r7z_A* 3r82_A* 3vcq_A* 4dbx_A 4de4_A* 4dfb_A* 4dfu_A* 4dt9_A* 4dt8_A* 4dtb_A* 3sgc_A 4dta_A* 3lzh_A
Probab=98.67 E-value=1.4e-08 Score=110.62 Aligned_cols=195 Identities=15% Similarity=0.144 Sum_probs=122.5
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-CCC--cceEEeeeeccccCCCceEEEEE
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRN--LIKIVTICSSIDFKGVDFKALVY 782 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~n--iv~l~~~~~~~~~~~~~~~~lv~ 782 (1009)
.+.++.|....||+.. ..+++|+.... .....+.+|+++++.+. +.. +.+++.++... ......++||
T Consensus 25 i~~~~~G~~n~v~~v~-----~~~vlR~~~~~--~~~~~~~~E~~~l~~l~~~~~v~vP~~~~~~~~~--~~~~~~~~vm 95 (304)
T 3sg8_A 25 IEISGEGNDCIAYEIN-----RDFIFKFPKHS--RGSTNLFNEVNILKRIHNKLPLPIPEVVFTGMPS--ETYQMSFAGF 95 (304)
T ss_dssp CCEEEECSSEEEEEST-----TSEEEEEESSH--HHHHHHHHHHHHHHHHTTSSSSCCCCEEEECCCC--SSCSCSCEEE
T ss_pred eEecCCCCcceEEEEC-----CEEEEEecCCc--chHHHHHHHHHHHHHHHhcCCCCCCceEeecCCC--CCCCcceEEE
Confidence 4568999999999863 45888986422 23467889999998883 332 34455443221 1112347899
Q ss_pred eccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhc----------------------------------
Q 047768 783 EYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHH---------------------------------- 828 (1009)
Q Consensus 783 e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~---------------------------------- 828 (1009)
|+++|.++.+.... .++..++..++.+++..++.||+.
T Consensus 96 ~~i~G~~l~~~~~~--------~l~~~~~~~~~~~l~~~la~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 167 (304)
T 3sg8_A 96 TKIKGVPLTPLLLN--------NLPKQSQNQAAKDLARFLSELHSINISGFKSNLVLDFREKINEDNKKIKKLLSRELKG 167 (304)
T ss_dssp ECCCCEECCHHHHH--------TSCHHHHHHHHHHHHHHHHHHHHSCCTTSCGGGBCCHHHHHHHHHHHHHHHHTTTSCH
T ss_pred cccCCeECCccccc--------cCCHHHHHHHHHHHHHHHHHHHcCCCCCCCccchhhHHHHHHHHHHHHHHHhcccCCc
Confidence 99999888653321 267777888888888888888861
Q ss_pred ---------------------CCCCceecCCCCCceeeCC--CCceEEeccccccccCCCCCCCccccCC--------cc
Q 047768 829 ---------------------CQPPIVHGDLKPSNVLLDH--DMVAHVSDFGLAKFLSASPLGNVVETPS--------SS 877 (1009)
Q Consensus 829 ---------------------~~~~ivHrdlk~~Nill~~--~~~~kl~DfGla~~~~~~~~~~~~~~~~--------~~ 877 (1009)
..+.++|+|+++.||+++. +..+.|+||+.+....+.. +...... ..
T Consensus 168 ~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~iD~~~~~~~~~~~--Dl~~~~~~~~~~~~~~~ 245 (304)
T 3sg8_A 168 PQMKKVDDFYRDILENEIYFKYYPCLIHNDFSSDHILFDTEKNTICGIIDFGDAAISDPDN--DFISLMEDDEEYGMEFV 245 (304)
T ss_dssp HHHHHHHHHHHHHHTCGGGTCCCCEEECSCCCGGGEEEETTTTEEEEECCCTTCEEECTTH--HHHTTCCTTTSCCHHHH
T ss_pred ccHHHHHHHHHHHHhccccccCCceeEeCCCCcccEEEeCCCCCEEEEEeCCCCccCChHH--HHHHHHhhccccCHHHH
Confidence 1245899999999999998 5678999999987543210 0000000 00
Q ss_pred ccccccccccC-ccccCCCCCCCcccchHHHHHHHHHHhCCCCCc
Q 047768 878 IGVKGTIGYVA-PEYGLGGEASMRGGVYSYGILLLEIFTRRRPTE 921 (1009)
Q Consensus 878 ~~~~gt~~y~a-PE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~ 921 (1009)
.......++.. |+.... .....+.|++|.++|++.+|..+|.
T Consensus 246 ~~~l~~Y~~~~~~~~~~r--~~~~~~~~~l~~~~~~~~~g~~~~~ 288 (304)
T 3sg8_A 246 SKILNHYKHKDIPTVLEK--YRMKEKYWSFEKIIYGKEYGYMDWY 288 (304)
T ss_dssp HHHHHHHTCSCHHHHHHH--HHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHcCCCCcHHHHHH--HHHHHHHHHHHHHHHHHHcCCHHHH
Confidence 00000011111 222111 1122589999999999999988753
No 415
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=98.49 E-value=1.1e-08 Score=107.10 Aligned_cols=79 Identities=20% Similarity=0.368 Sum_probs=46.2
Q ss_pred CCCCCCeeeccccccCC--CccccccCCCCccEEEecCccccccccccccccc--ccceEcCCCccccccccc-------
Q 047768 511 NLKSLVRLGIARNQFSG--QIPVTLGACTSLEYVELQGNSFSGTIPQSLSSLT--SIKELDLSQNNFSGQIPK------- 579 (1009)
Q Consensus 511 ~l~~L~~L~ls~N~l~~--~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~--~L~~L~Ls~N~l~~~~p~------- 579 (1009)
++++|+.|+|++|+|++ .+|..+..+++|+.|+|++|+|++. ..+..+. +|++|+|++|.+++.+|.
T Consensus 168 ~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~--~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 168 NIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE--RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG--GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc--hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 45566666666666665 3345555666666666666666643 2233333 666666666666655542
Q ss_pred ccccccccCcee
Q 047768 580 YLENLSFLQYLN 591 (1009)
Q Consensus 580 ~~~~l~~L~~L~ 591 (1009)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 345566666554
No 416
>3r70_A Aminoglycoside phosphotransferase; structural genomics, center for structural genomics of infec diseases, csgid; HET: MSE ADP PE3; 1.80A {Escherichia coli} PDB: 3r6z_A* 3uzr_A* 4dca_A* 3hav_A* 3ham_A*
Probab=98.32 E-value=1.9e-06 Score=94.27 Aligned_cols=137 Identities=18% Similarity=0.178 Sum_probs=100.0
Q ss_pred cCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCC----CCcceEEeeeeccccCCCce
Q 047768 702 EFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRH----RNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 702 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h----~niv~l~~~~~~~~~~~~~~ 777 (1009)
.+...+.++.|....||+. +..+++|+..... ....+.+|.++++.+.+ ..+.+++++ +.
T Consensus 38 ~i~~v~~l~~G~~n~vy~v-----g~~~vlR~~~~~~--~~~~~~~E~~~L~~L~~~~~~~~vP~v~~~---------~~ 101 (320)
T 3r70_A 38 KINELRYLSSGDDSDTFLC-----NEQYVVKVPKRDS--VRISQKRELELYRFLENCKLSYQIPAVVYQ---------SD 101 (320)
T ss_dssp CCSCEEEEEECSSEEEEEE-----TTTEEEEEESSHH--HHHHHHHHHHHHHHHTTSCCSSBCCCEEEE---------CS
T ss_pred ceEEEEeCCCCCCceEEEE-----CCEEEEEeCCcHH--HHHHHHHHHHHHHHHHhcCCCCCcceEEec---------CC
Confidence 4555678999999999998 5568888763221 23568899999998865 223455544 23
Q ss_pred EEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcC----------------------------
Q 047768 778 KALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHC---------------------------- 829 (1009)
Q Consensus 778 ~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~---------------------------- 829 (1009)
.++||||++|.++.+.... .++..++..++.++++.++.||+..
T Consensus 102 ~~lvme~i~G~~l~~~~~~--------~l~~~~~~~~~~~l~~~La~LH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 173 (320)
T 3r70_A 102 RFNIMKYIKGERITYEQYH--------KLSEKEKDALAYDEATFLKELHSIEIDCSVSLFSDALVNKKDKFLQDKKLLIS 173 (320)
T ss_dssp SCEEEECCCCBCCCHHHHT--------TSCHHHHHHHHHHHHHHHHHHHHSCCCTTSHHHHTTBCCHHHHHHHHHHHHHH
T ss_pred cEEEEeecCCccccccccc--------cCCHHHHHHHHHHHHHHHHHHhCCCcccCCCccccccccchHHHHHHHHHHHH
Confidence 4799999999888643211 2566677778888888888888532
Q ss_pred --------------------------------CCCceecCCCCCceeeCCCCceEEecccccccc
Q 047768 830 --------------------------------QPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFL 862 (1009)
Q Consensus 830 --------------------------------~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~ 862 (1009)
.+.++|+|++|.||+++.+..+.|+||+.+...
T Consensus 174 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~H~D~~~~N~l~~~~~~~~~iD~~~~~~~ 238 (320)
T 3r70_A 174 ILEKEQLLTDEMLEHIETIYENILSNAVLFKYTPCLVHNDFSANNMIFRNNRLFGVIDFGDFNVG 238 (320)
T ss_dssp HHHHTTCCCHHHHHHHHHHHHHHHTCGGGTCCCCEEECSCCSGGGEEEETTEEEEECCCTTCEEE
T ss_pred HHhhcccccccchHHHHHHHHHHHhccccccCCceeeECCCCCCcEEEECCceEEEECCcccccC
Confidence 123599999999999999777899999988643
No 417
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.30 E-value=2.4e-08 Score=99.65 Aligned_cols=123 Identities=13% Similarity=0.089 Sum_probs=66.6
Q ss_pred ccCccccCCCCCCeeeecCC-cCCcc----CCccccCccccccccccccccCCC----CCCCCcCCCcCcEEeccccccc
Q 047768 85 ILSPYVGNLSFLRYINIADN-DFHGE----IPDRIGNLFRLETLVLANNSFSGR----IPTNLSHCSKLITFSAHRNNLV 155 (1009)
Q Consensus 85 ~~~~~~~~l~~L~~L~L~~n-~~~~~----~p~~~~~l~~L~~L~Ls~N~l~~~----~p~~l~~l~~L~~L~l~~n~l~ 155 (1009)
.+...+...++|++|+|++| .+... +...+...++|++|||++|.|... +...+...++|++|+|++|.+.
T Consensus 27 ~l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~ 106 (185)
T 1io0_A 27 TLKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFIS 106 (185)
T ss_dssp HHHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCC
T ss_pred HHHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCC
Confidence 34445666777788888877 77632 334455556677777777766531 1222333344444444444443
Q ss_pred CCCchHHhhhccCCcCeEeecCccCCCCCCcccCCccccceeec--ccCcccCC----CCcccccccccccccccCccCC
Q 047768 156 GEIPEELISRRLFNLQGLSVGDNQLTGQLPASIGNLSALRVIDI--RTNRLWGK----IPITLSQLTSLAYLHVGDNHFS 229 (1009)
Q Consensus 156 ~~~p~~~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L--~~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~ 229 (1009)
..--. .+...+...++|++|+| ++|.|... +...+...++|++|+|++|.+.
T Consensus 107 ~~g~~----------------------~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 107 GSGIL----------------------ALVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHH----------------------HHHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHH----------------------HHHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCCC
Confidence 21111 12334555566677777 66666432 2334445567777777777764
No 418
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.27 E-value=1.6e-07 Score=93.76 Aligned_cols=89 Identities=18% Similarity=0.267 Sum_probs=56.9
Q ss_pred cCCCCCCeeeccccccCCC----ccccccCCCCccEEEecCcccccc----cccccccccccceEcC--CCcccccc---
Q 047768 510 GNLKSLVRLGIARNQFSGQ----IPVTLGACTSLEYVELQGNSFSGT----IPQSLSSLTSIKELDL--SQNNFSGQ--- 576 (1009)
Q Consensus 510 ~~l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~----~p~~~~~l~~L~~L~L--s~N~l~~~--- 576 (1009)
...++|++|+|++|.|... +...+...++|++|+|++|+|+.. +..++...+.|++|+| ++|.|...
T Consensus 62 ~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~~ 141 (185)
T 1io0_A 62 KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILALVEALQSNTSLIELRIDNQSQPLGNNVEM 141 (185)
T ss_dssp TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHHH
T ss_pred HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHHHHHHHHhCCCceEEEecCCCCCCCHHHHH
Confidence 3345677777777776532 234445556777777777777653 3455666677777777 67777643
Q ss_pred -cccccccccccCceecccccCc
Q 047768 577 -IPKYLENLSFLQYLNLSYNHFE 598 (1009)
Q Consensus 577 -~p~~~~~l~~L~~L~ls~N~l~ 598 (1009)
+...+...+.|++|+|++|.+.
T Consensus 142 ~l~~~L~~n~~L~~L~L~~n~i~ 164 (185)
T 1io0_A 142 EIANMLEKNTTLLKFGYHFTQQG 164 (185)
T ss_dssp HHHHHHHHCSSCCEEECCCSSHH
T ss_pred HHHHHHHhCCCcCEEeccCCCCC
Confidence 3344555577788888777764
No 419
>3d1u_A Putative fructosamine-3-kinase; YP_290396.1, structural genomics, joint center for structural genomics, JCSG, protein structure initiative; 1.85A {Thermobifida fusca} PDB: 3f7w_A
Probab=98.17 E-value=1.1e-05 Score=86.45 Aligned_cols=144 Identities=21% Similarity=0.193 Sum_probs=92.5
Q ss_pred cCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCC---CcceEEeeeeccccCCCceEEEE
Q 047768 705 SSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHR---NLIKIVTICSSIDFKGVDFKALV 781 (1009)
Q Consensus 705 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~~~~~~lv 781 (1009)
..+.++.|.++.||++... +|+.++||+...........+.+|++.|+.+.+. .+.+++++. ..++|
T Consensus 19 ~~~~l~gG~~n~vy~v~~~-dG~~~vvK~~~~~~~~~~~~~~~E~~~L~~L~~~~~v~vP~v~~~~---------~~~lv 88 (288)
T 3d1u_A 19 AVAERGHSHRWHLYRVELA-DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DRTLA 88 (288)
T ss_dssp EEEEEEEETTEEEEEEEET-TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TTEEE
T ss_pred ceeeeCCcchhheEEEEeC-CCCeEEEEecCCCCcchhHHHHHHHHHHHHHHhcCCCCcCeEEEec---------CcEEE
Confidence 3567999999999999874 6889999996543333357899999999999765 577887762 24899
Q ss_pred EeccCCCCHH--------HH---HhccCCC-CCc--------------cCCCHHHHHH--------------------HH
Q 047768 782 YEYMQNGSLE--------EW---LHQRDDQ-LGI--------------CNLSLIQRLN--------------------IV 815 (1009)
Q Consensus 782 ~e~~~~gsL~--------~~---l~~~~~~-~~~--------------~~l~~~~~~~--------------------i~ 815 (1009)
|||++++++. +. ++..... .+. ..-+|.+... ..
T Consensus 89 me~l~g~~~~~~~~~~lg~~LA~LH~~~~~~fG~~~~~~~G~~~q~~~w~~~W~~f~~~~rl~~~l~~a~~~~~~~~~~~ 168 (288)
T 3d1u_A 89 MEWVDERPPTPEAAERFGHQLAAMHLAGAESFGATWDGYIGPLPMDNTPRSTWPEFYAEQRILPYLRRAADRGALTPGDV 168 (288)
T ss_dssp EECCCCCCCCHHHHHHHHHHHHHHHHTCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHHTHHHHHHHHHTTSSCHHHH
T ss_pred EEecccCCCChHHHHHHHHHHHHHHcCCCCccCCCCCCCCCCCCCCCCCCCCHHHHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 9999988742 11 2322111 000 0123332210 01
Q ss_pred HHHHHHHHHHh----hcCCCCceecCCCCCceeeCCCCceEEecccccc
Q 047768 816 IDVASAVEYLH----HHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAK 860 (1009)
Q Consensus 816 ~~ia~~l~~LH----~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~ 860 (1009)
..+-+.++.+. ....+.++|+|+.+.||+++.+ .+.|+|| .+.
T Consensus 169 ~~~~~l~~~l~~~l~~~~~~~l~HgD~~~~N~l~~~~-~~~~iD~-~~~ 215 (288)
T 3d1u_A 169 RLVEKVLDALDHLAGDPEPPARIHGDLWNGNVLWQDD-GAVVIDP-AAH 215 (288)
T ss_dssp HHHHHHHHTHHHHTCSCCCCEEECSCCSGGGEEEETT-EEEECSC-CCE
T ss_pred HHHHHHHHHHHHHhcCCCCCcceECCCCcCcEEEeCC-CeEEEcC-CcC
Confidence 11112222232 2235689999999999999884 5889999 654
No 420
>4gkh_A Aminoglycoside 3'-phosphotransferase APHA1-IAB; pyrazolopyrimidine, 1-Na-PP1, bumped kinase inhibitor, BKI, kinase inhibitor; HET: KAN 0J9; 1.86A {Acinetobacter baumannii} PDB: 4feu_A* 4few_A* 4fex_A* 4fev_A* 4gki_A* 4ej7_A* 3r78_A*
Probab=98.16 E-value=8.7e-06 Score=86.69 Aligned_cols=135 Identities=19% Similarity=0.119 Sum_probs=98.0
Q ss_pred cccccCCc-eEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-CCCcceEEeeeeccccCCCceEEEEEecc
Q 047768 708 TIGRGSFG-FVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRNLIKIVTICSSIDFKGVDFKALVYEYM 785 (1009)
Q Consensus 708 ~lg~G~~g-~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~~~~~~lv~e~~ 785 (1009)
.+..|..| .||+.....++..++||+-... ....+.+|.+.|+.+. +--+.++++++... +..++|||++
T Consensus 31 ~~~~G~S~~~v~rl~~~~~~~~~~lk~~~~~---~~~~~~~E~~~l~~l~~~vPVP~v~~~~~~~-----~~~~lvme~l 102 (272)
T 4gkh_A 31 RDNVGQSGATIYRLYGKPNAPELFLKHGKGS---VANDVTDEMVRLNWLTAFMPLPTIKHFIRTP-----DDAWLLTTAI 102 (272)
T ss_dssp EEECSSSSCEEEEEECCTTCCCEEEEEEETH---HHHHHHHHHHHHHHHTTTSCCCCEEEEEEET-----TEEEEEEECC
T ss_pred EccCCCcCCeEEEEEecCCCeEEEEEECCCC---CHhHHHHHHHHHHHhccCCCcCeEEEEEEEC-----CeEEEEEEee
Confidence 45556655 6898877767778999986432 3457889999998884 33466777776543 5679999999
Q ss_pred CCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcC------------------------------------
Q 047768 786 QNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHC------------------------------------ 829 (1009)
Q Consensus 786 ~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~------------------------------------ 829 (1009)
++.++.+...... .....++.+++..++.||...
T Consensus 103 ~G~~~~~~~~~~~----------~~~~~~~~~l~~~L~~Lh~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 172 (272)
T 4gkh_A 103 PGKTAFQVLEEYP----------DSGENIVDALAVFLRRLHSIPVCNCPFNSDRVFRLAQAQSRMNNGLVDASDFDDERN 172 (272)
T ss_dssp CSEEHHHHHHHCG----------GGHHHHHHHHHHHHHHHHTSCGGGCCBBCCHHHHHHHHHHHHHTTCCCGGGCCGGGT
T ss_pred CCccccccccCCH----------HHHHHHHHHHHHHHHHhcCCCcccCCcCcccccchhhHHHHHHHhhhhhhhcccccc
Confidence 9988877654322 123456677777777777531
Q ss_pred -------------------CCCceecCCCCCceeeCCCCceEEecccccc
Q 047768 830 -------------------QPPIVHGDLKPSNVLLDHDMVAHVSDFGLAK 860 (1009)
Q Consensus 830 -------------------~~~ivHrdlk~~Nill~~~~~~kl~DfGla~ 860 (1009)
.+.++|+|+.+.||+++.++.+-|+||+.+.
T Consensus 173 ~~~~~~~~~~l~~~~~~~~~~~l~HGDl~~~Nil~~~~~~~~viDwe~a~ 222 (272)
T 4gkh_A 173 GWPVEQVWKEMHKLLPFSPDSVVTHGDFSLDNLIFDEGKLIGCIDVGRVG 222 (272)
T ss_dssp TCCHHHHHHHHHTTCCCCCCEEEECSCCCTTSEEEETTEEEEECCCTTCE
T ss_pred chHHHHHHHHHHhcccccCCcEEEcCCCCCCeEEEECCeEEEEEECcccc
Confidence 1247999999999999988778899999875
No 421
>3tdw_A Gentamicin resistance protein; kinase, phosphoryl transfer, antibiotic resistance, transfer; HET: GDP; 1.70A {Enterococcus gallinarum} PDB: 3tdv_A*
Probab=98.06 E-value=1.7e-05 Score=85.90 Aligned_cols=137 Identities=19% Similarity=0.199 Sum_probs=92.1
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCC---CcceEEeeeeccccCCCceEEEEE
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHR---NLIKIVTICSSIDFKGVDFKALVY 782 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~---niv~l~~~~~~~~~~~~~~~~lv~ 782 (1009)
.+.++.|....||+. |..++||+... ......+.+|+++|+.+.+. .+.+++.++.. ..+..++||
T Consensus 24 v~~l~~G~~n~v~~v-----g~~~VlR~~~~--~~~~~~~~~E~~~L~~L~~~~~v~VP~~~~~~~~----~~g~~~~v~ 92 (306)
T 3tdw_A 24 VESLGEGFRNYAILV-----NGDWVFRFPKS--QQGADELNKEIQLLPLLVGCVKVNIPQYVYIGKR----SDGNPFVGY 92 (306)
T ss_dssp EEEEEECSSEEEEEE-----TTTEEEEEESS--HHHHHHHHHHHHHHHHHTTTCSSBCCCEEEEEEC----TTSCEEEEE
T ss_pred eeecCCCcceeEEEE-----CCEEEEEecCC--chHHHHHHHHHHHHHHHHhcCCCCCCCeEeeccc----CCCceEEEE
Confidence 356788888899987 45688888521 12346789999999999642 35566666531 224568999
Q ss_pred eccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhc----------------------------------
Q 047768 783 EYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHH---------------------------------- 828 (1009)
Q Consensus 783 e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~---------------------------------- 828 (1009)
||++|.++.+..-. .++..+...++.++++.++.||+.
T Consensus 93 e~i~G~~l~~~~~~--------~l~~~~~~~~~~~lg~~La~LH~~~~~~~~~~g~p~~~w~~~~~~~~~~~~~~~~~~l 164 (306)
T 3tdw_A 93 RKVQGQILGEDGMA--------VLPDDAKDRLALQLAEFMNELSAFPVETAISAGVPVTNLKNKILLLSEAVEDQVFPLL 164 (306)
T ss_dssp ECCCSEECHHHHHT--------TSCHHHHHHHHHHHHHHHHHHHHSCHHHHHHTTCCBCCHHHHHHHHHHHHHHHTGGGS
T ss_pred eccCCeECchhhhh--------hCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCChHHHHHHHHHHHHHHHHhccccc
Confidence 99999887663211 134444555555555555555542
Q ss_pred -----------------------CCCCceecCCCCCceeeCC---CCc-eEEeccccccc
Q 047768 829 -----------------------CQPPIVHGDLKPSNVLLDH---DMV-AHVSDFGLAKF 861 (1009)
Q Consensus 829 -----------------------~~~~ivHrdlk~~Nill~~---~~~-~kl~DfGla~~ 861 (1009)
..+.++|+|+.+.||+++. ++. +.|+||+.+..
T Consensus 165 ~~~~~~~l~~~~~~~l~~~~~~~~~~~~~HgD~~~~N~l~~~~~~~~~~~~~iD~~~a~~ 224 (306)
T 3tdw_A 165 DESLRDYLTLRFQSYMTHPVYTRYTPRLIHGDLSPDHFLTNLNSRQTPLTGIIDFGDAAI 224 (306)
T ss_dssp CHHHHHHHHHHHHHHHHCHHHHCCCCEEECSCCSGGGEEECTTCSSCCEEEECCCTTCEE
T ss_pred chhhHHHHHHHHHHHHhCcccccCCCeeEeCCCCcccEEEecCCCCCceEEEEehhhcCC
Confidence 2335799999999999987 344 58999998763
No 422
>3ovc_A Hygromycin-B 4-O-kinase; aminoglycoside phosphotransferase, structural genomics, PSI- protein structure initiative; HET: HY0 PE4; 1.95A {Escherichia coli} PDB: 3tyk_A*
Probab=97.83 E-value=5.3e-05 Score=84.02 Aligned_cols=147 Identities=14% Similarity=0.131 Sum_probs=89.5
Q ss_pred cCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCC--cceEEeeeeccccCCCceEEEEE
Q 047768 705 SSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRN--LIKIVTICSSIDFKGVDFKALVY 782 (1009)
Q Consensus 705 ~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~l~~~~~~~~~~~~~~~~lv~ 782 (1009)
..+.++.|....+|+... ++..+++|+... ...+.+|+.+++.+.... +.++++++... ....++||
T Consensus 45 ~i~~l~gG~~n~~y~v~~--~g~~~vlK~~~~-----~~~~~~E~~~l~~L~~~gvpvP~vl~~~~~~----~g~~~lv~ 113 (362)
T 3ovc_A 45 DLMQLSEGEESRAFSFDV--GGRGYVLRVNSC-----ADGFYKDRYVYRHFASAALPIPEVLDIGEFS----ESLTYCIS 113 (362)
T ss_dssp EEEEEEECSSEEEEEEEE--TTEEEEEEEESC-----CHHHHHHHHHHHHHCCSSSCCCCEEEEEESS----SSCEEEEE
T ss_pred eEEECCCCCcceEEEEEE--CCcEEEEEeCCc-----hhhHHHHHHHHHHHHhcCCCCceEEEeccCC----CCCeEEEE
Confidence 356788999999999875 588899998632 236889999999886433 45666665432 14578999
Q ss_pred eccCCCCHHH---------------H---HhccCCCC--C-----c----cCCCHHHH---------------------H
Q 047768 783 EYMQNGSLEE---------------W---LHQRDDQL--G-----I----CNLSLIQR---------------------L 812 (1009)
Q Consensus 783 e~~~~gsL~~---------------~---l~~~~~~~--~-----~----~~l~~~~~---------------------~ 812 (1009)
||+++.++.+ . ++...... + . ..-+|.+. .
T Consensus 114 e~l~G~~l~~l~~~~~~~~~~~lg~~La~LH~~~~~~~~gl~~~~~~~~~~~~~w~~~~~~~~~~~l~~~~~~~~~~~~~ 193 (362)
T 3ovc_A 114 RRAQGVTLQDLPETELPAVLQPVAEAMDAIAAADLSQTSGFGPFGPQGIGQYTTWRDFICAIADPHVYHWQTVMDDTVSA 193 (362)
T ss_dssp ECCCSEETTTSCGGGSGGGHHHHHHHHHHHHHCCCTTCBCEEEECTTSBEEESSHHHHHHGGGCTTTCCHHHHCCTTTHH
T ss_pred EecCCCCcccCCHHHHHHHHHHHHHHHHHHhcCCCccccCccCCCCCCCCccccHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9998765431 1 11111000 0 0 00011111 0
Q ss_pred HHHHHHHHHHHHHhhc-CCCCceecCCCCCceeeCCCCceEEecccccccc
Q 047768 813 NIVIDVASAVEYLHHH-CQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFL 862 (1009)
Q Consensus 813 ~i~~~ia~~l~~LH~~-~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~ 862 (1009)
.....+.....++... ..+.++|+|+.+.||+++.++.+.|+||+.+..-
T Consensus 194 ~~~~~~~~l~~~l~~lp~~~~l~HgDl~~~Nil~~~~~~~~viD~~~~~~g 244 (362)
T 3ovc_A 194 SVAQALDELMLWAEDCPEVRHLVHADFGSNNVLTDNGRITAVIDWSEAMFG 244 (362)
T ss_dssp HHHHHHHHHHHHGGGCCCCCEEECSSCSSTTEEEETTEEEEECCCTTCEEE
T ss_pred cchHHHHHHHHHHhhCCCCcEEEeCCCCCCeEEEeCCCEEEEECCcccccC
Confidence 1111222223333221 1256899999999999988888899999988754
No 423
>3ats_A Putative uncharacterized protein; hypothetical protein, putative aminoglycoside phosphortransf transferase; 1.67A {Mycobacterium tuberculosis} PDB: 3att_A*
Probab=97.73 E-value=8.5e-05 Score=82.50 Aligned_cols=84 Identities=8% Similarity=0.027 Sum_probs=55.4
Q ss_pred CCcc-cccCCceEEEEEEe--c----CCeEEEEEEeeccc---ccchHHHHHHHHHHHhcC-C--CCcceEEeeeecccc
Q 047768 706 SNTI-GRGSFGFVYKGVLH--E----NGMLVAVKVINLEQ---KGGSKSFAAECEALRSIR-H--RNLIKIVTICSSIDF 772 (1009)
Q Consensus 706 ~~~l-g~G~~g~V~~~~~~--~----~~~~vavK~~~~~~---~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~~~ 772 (1009)
.+.| +.|....+|+.... . +++.+++|+..... ......+.+|+++++.+. + -.+.++++++.....
T Consensus 25 ~~~l~~~G~~n~~y~v~~~~~~~~~~~~~~~vlR~~~~~~~~~~~~~~~~~~E~~~l~~L~~~~~vpvP~v~~~~~~~~~ 104 (357)
T 3ats_A 25 ESGVDSTGMSSETIILTARWQQDGRSIQQKLVARVAPAAEDVPVFPTYRLDHQFEVIRLVGELTDVPVPRVRWIETTGDV 104 (357)
T ss_dssp EEEECTTSSEEEEEEEEEEEEETTEEEEEEEEEEECCCGGGCCSSSCCCHHHHHHHHHHHHHHCCSCCCCEEEEECSSTT
T ss_pred EEECCCCCccceEEEEEEecccCCCCCCceEEEEeCCCCCccccCchhHHHHHHHHHHHHhhcCCCCCCcEEEEccCCCc
Confidence 3567 88889999988653 1 15678899864332 112356788999998884 3 356778877643211
Q ss_pred CCCceEEEEEeccCCCCHH
Q 047768 773 KGVDFKALVYEYMQNGSLE 791 (1009)
Q Consensus 773 ~~~~~~~lv~e~~~~gsL~ 791 (1009)
.+..++||||++|..+.
T Consensus 105 --~g~~~~v~e~l~G~~l~ 121 (357)
T 3ats_A 105 --LGTPFFLMDYVEGVVPP 121 (357)
T ss_dssp --TSSCEEEEECCCCBCCC
T ss_pred --cCCceEEEEecCCCChh
Confidence 13457999999886653
No 424
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.63 E-value=2.1e-05 Score=76.18 Aligned_cols=84 Identities=15% Similarity=0.084 Sum_probs=62.9
Q ss_pred CCCCeeeccccccCCCccccccCCCCccEEEecCcc-cccccccccccc----cccceEcCCCcc-cccccccccccccc
Q 047768 513 KSLVRLGIARNQFSGQIPVTLGACTSLEYVELQGNS-FSGTIPQSLSSL----TSIKELDLSQNN-FSGQIPKYLENLSF 586 (1009)
Q Consensus 513 ~~L~~L~ls~N~l~~~~p~~~~~l~~L~~L~L~~N~-l~~~~p~~~~~l----~~L~~L~Ls~N~-l~~~~p~~~~~l~~ 586 (1009)
..|+.||++++.++..--..+.++++|+.|+|+++. ++..--..++.+ ++|++|||++|. ++..--..+..+++
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~~~ 140 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHFRN 140 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGCTT
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcCCC
Confidence 468888888888876655667888889999999884 776544556554 478999998874 77544456778888
Q ss_pred cCceeccccc
Q 047768 587 LQYLNLSYNH 596 (1009)
Q Consensus 587 L~~L~ls~N~ 596 (1009)
|++|+|++++
T Consensus 141 L~~L~L~~c~ 150 (176)
T 3e4g_A 141 LKYLFLSDLP 150 (176)
T ss_dssp CCEEEEESCT
T ss_pred CCEEECCCCC
Confidence 9999988774
No 425
>2olc_A MTR kinase, methylthioribose kinase; kinase ADP-2HO complex, transferase; HET: CPS ADP; 2.00A {Bacillus subtilis} SCOP: d.144.1.6 PDB: 2pu8_A* 2pui_A* 2pul_A* 2pun_A* 2pup_A*
Probab=97.63 E-value=0.00014 Score=82.11 Aligned_cols=76 Identities=16% Similarity=0.117 Sum_probs=48.9
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEeecccc-------cchHHHHHHHHHHHhcCC--C-CcceEEeeeeccccCCC
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQK-------GGSKSFAAECEALRSIRH--R-NLIKIVTICSSIDFKGV 775 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~-------~~~~~~~~E~~~l~~l~h--~-niv~l~~~~~~~~~~~~ 775 (1009)
.+.+|.|..+.||++....+++.|+||....... .....+..|.++++.+.. + .+.+++.+..
T Consensus 35 ~~~lg~G~~n~vyrv~~~~~~~~~vvK~~~~~~r~~~~~~~~~~~r~~~E~~~L~~l~~~~~~~vP~~~~~d~------- 107 (397)
T 2olc_A 35 CQEIGDGNLNYVFHIYDQEHDRALIIKQAVPYAKVVGESWPLTIDRARIESSALIRQGEHVPHLVPRVFYSDT------- 107 (397)
T ss_dssp EEECCSSSSEEEEEEEC----CEEEEEEECCC-------CCCCTTHHHHHHHHHHHHHTTCGGGSCCEEEEET-------
T ss_pred EEECCCCceEEEEEEEECCCCcEEEEEecchhhcccCCCCcCcHHHHHHHHHHHHHhhhhCCCCcCeEEEEcC-------
Confidence 4579999999999997655578899998643211 123567889999988742 3 3445554421
Q ss_pred ceEEEEEeccCCC
Q 047768 776 DFKALVYEYMQNG 788 (1009)
Q Consensus 776 ~~~~lv~e~~~~g 788 (1009)
...++||||+++.
T Consensus 108 ~~~~lvmE~l~g~ 120 (397)
T 2olc_A 108 EMAVTVMEDLSHL 120 (397)
T ss_dssp TTTEEEECCCTTS
T ss_pred CccEEEEEeCCCc
Confidence 2347999999764
No 426
>3f7w_A Putative fructosamine-3-kinase; YP_290396.1, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI-2; 1.85A {Thermobifida fusca YX}
Probab=97.45 E-value=0.00035 Score=74.82 Aligned_cols=78 Identities=17% Similarity=0.174 Sum_probs=57.0
Q ss_pred cCccCCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC-C--CCcceEEeeeeccccCCCceE
Q 047768 702 EFSSSNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR-H--RNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 702 ~~~~~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h--~niv~l~~~~~~~~~~~~~~~ 778 (1009)
+....+.+|.|..+.||+.+.. +|+.|+||+...........+.+|++.|+.+. . --+.+++++. ..
T Consensus 16 ~v~~v~~~g~G~~~~vyrv~l~-DG~~~~vK~~~~~~~~~~~~~~~Ea~~L~~L~~~~~vpvP~v~~~~---------~~ 85 (288)
T 3f7w_A 16 EVAAVAERGHSHRWHLYRVELA-DGTPLFVKALPDDAPALDGLFRAEALGLDWLGRSFGSPVPQVAGWD---------DR 85 (288)
T ss_dssp CEEEEEEEEEETTEEEEEEEET-TSCEEEEEECCTTCCCCTTHHHHHHHHHHHHTCSTTCCSCCEEEEE---------TT
T ss_pred CeEEEEecCCCCCeEEEEEEEC-CCCEEEEEEeCCCCcchhhHHHHHHHHHHHHHhhCCCCcceEEecc---------Cc
Confidence 4555678999999999999874 78999999875444444567899999999884 2 2345556542 23
Q ss_pred EEEEeccCCCC
Q 047768 779 ALVYEYMQNGS 789 (1009)
Q Consensus 779 ~lv~e~~~~gs 789 (1009)
++||||++.+.
T Consensus 86 ~lv~e~l~~~~ 96 (288)
T 3f7w_A 86 TLAMEWVDERP 96 (288)
T ss_dssp EEEEECCCCCC
T ss_pred eEEEEeecccC
Confidence 78999998764
No 427
>2q83_A YTAA protein; 2635576, structural genomics, joint center for structu genomics, JCSG, protein structure initiative, PSI-2, transf; HET: ADN CIT UNL; 2.50A {Bacillus subtilis}
Probab=97.39 E-value=0.00078 Score=74.08 Aligned_cols=148 Identities=18% Similarity=0.133 Sum_probs=80.4
Q ss_pred CcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC--CCCcceEEeeeeccc-cCCCceEEEEEe
Q 047768 707 NTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR--HRNLIKIVTICSSID-FKGVDFKALVYE 783 (1009)
Q Consensus 707 ~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~--h~niv~l~~~~~~~~-~~~~~~~~lv~e 783 (1009)
+.++.|..+.||+.... +..+++|+... ....+..|.++++.+. .-.+.+++....... ....+..++|+|
T Consensus 38 ~~l~gG~~n~~~~v~~~--~~~~vlk~~~~----~~~~~~~e~~~l~~L~~~g~~vp~~~~~~~g~~~~~~~~~~~~l~~ 111 (346)
T 2q83_A 38 DVIQGNQMALVWKVHTD--SGAVCLKRIHR----PEKKALFSIFAQDYLAKKGMNVPGILPNKKGSLYSKHGSFLFVVYD 111 (346)
T ss_dssp EECC----CEEEEEEET--TEEEEEEEECS----CHHHHHHHHHHHHHHHHHTCSSCCBCCCTTSCSCEEETTEEEEEEE
T ss_pred eeccccccCcEEEEEeC--CCCEEEEecCC----CHHHHHHHHHHHHHHHHcCCCCCceeecCCCCEEEEECCEEEEEEE
Confidence 34666778999998763 44589998854 2244556666666653 122334443110000 011346789999
Q ss_pred ccCCCCHH--------------HHHhccCCCC----C----ccCCCHHHH------------------------------
Q 047768 784 YMQNGSLE--------------EWLHQRDDQL----G----ICNLSLIQR------------------------------ 811 (1009)
Q Consensus 784 ~~~~gsL~--------------~~l~~~~~~~----~----~~~l~~~~~------------------------------ 811 (1009)
|++|..+. ..++...... . ...-.|...
T Consensus 112 ~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 191 (346)
T 2q83_A 112 WIEGRPFELTVKQDLEFIMKGLADFHTASVGYQPPNGVPIFTKLGRWPNHYTKRCKQMETWKLMAEAEKEDPFSQLYLQE 191 (346)
T ss_dssp CCCCBCCCTTSHHHHHHHHHHHHHHHHHHTTCCCCTTCCCCBCTTCHHHHHHHHHHHHHHHHHHHHHCSSCHHHHHHHHH
T ss_pred eecCccCCCCCHHHHHHHHHHHHHHHHhCCCCCCCccchhcccccchHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHH
Confidence 99886432 1122211100 0 001123211
Q ss_pred -HHHHHHHHHHHHHHhh----------cCCCCceecCCCCCceeeCCCCceEEecccccc
Q 047768 812 -LNIVIDVASAVEYLHH----------HCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAK 860 (1009)
Q Consensus 812 -~~i~~~ia~~l~~LH~----------~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~ 860 (1009)
..+...+..++.+|+. ...+.++|+|+.+.||+++.++.+.|+||+.+.
T Consensus 192 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~HgD~~~~Nil~~~~~~~~lIDfe~a~ 251 (346)
T 2q83_A 192 IDGFIEDGLRIKDRLLQSTYVPWTEQLKKSPNLCHQDYGTGNTLLGENEQIWVIDLDTVS 251 (346)
T ss_dssp HHHHHHHHHHHHHHHHHTTHHHHHHHHHHSCCEECSSCSTTSEEECGGGCEEECCCTTCE
T ss_pred HHHHHHHHHHHHHHHHhchHHHHHHhccccCceecCCCCcccEEEeCCCcEEEEehhhcc
Confidence 0111223445666663 124589999999999999888899999999775
No 428
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=97.26 E-value=7.4e-05 Score=72.32 Aligned_cols=34 Identities=6% Similarity=0.075 Sum_probs=15.7
Q ss_pred CcCeEeecCcc-CCCCCCcccCCccccceeecccC
Q 047768 169 NLQGLSVGDNQ-LTGQLPASIGNLSALRVIDIRTN 202 (1009)
Q Consensus 169 ~L~~L~L~~n~-l~~~~p~~~~~l~~L~~L~L~~N 202 (1009)
+|++|+|++|. ++..--..+.++++|++|+|+++
T Consensus 115 ~L~~L~Ls~C~~ITD~Gl~~L~~~~~L~~L~L~~c 149 (176)
T 3e4g_A 115 SMLEMEIISCGNVTDKGIIALHHFRNLKYLFLSDL 149 (176)
T ss_dssp HCCEEEEESCTTCCHHHHHHGGGCTTCCEEEEESC
T ss_pred CCCEEEcCCCCcCCHHHHHHHhcCCCCCEEECCCC
Confidence 35555555542 44322233444555555555554
No 429
>3jr1_A Putative fructosamine-3-kinase; YP_719053.1, structural genomics, joint center for structural genomics, JCSG; HET: MSE UNL; 2.32A {Haemophilus somnus 129PT}
Probab=97.09 E-value=0.0022 Score=69.00 Aligned_cols=141 Identities=21% Similarity=0.198 Sum_probs=89.9
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcC---CCCcceEEeeeeccccCCCceEEEEE
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIR---HRNLIKIVTICSSIDFKGVDFKALVY 782 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~---h~niv~l~~~~~~~~~~~~~~~~lv~ 782 (1009)
.+.++.|....+|+... ++..++||+.... ....+.+|.+.|+.+. ...+.++++++... +..++||
T Consensus 41 ~~~l~gG~~n~~y~v~~--~~~~~vlK~~~~~---~~~~~~~E~~~L~~L~~~~~v~VP~vl~~~~~~-----g~~~lvm 110 (312)
T 3jr1_A 41 KEKLYSGEMNEIWLIND--EVQTVFVKINERS---YRSMFRAEADQLALLAKTNSINVPLVYGIGNSQ-----GHSFLLL 110 (312)
T ss_dssp EEEECCSSSSEEEEEES--SSCEEEEEEEEGG---GHHHHHHHHHHHHHHHHTTSSBCCCEEEEEECS-----SEEEEEE
T ss_pred eEEeCCccceeeeEEEE--CCCeEEEEeCCcc---cHHHHHHHHHHHHHHHhhCCCCcceEEEEeecC-----CceEEEE
Confidence 45789999999999875 4678889987532 3567889999998883 35677888876432 5679999
Q ss_pred eccCCCCHH--------H---HHhccCC--CCCc--------------cCCCHHHHH---HHHH----------------
Q 047768 783 EYMQNGSLE--------E---WLHQRDD--QLGI--------------CNLSLIQRL---NIVI---------------- 816 (1009)
Q Consensus 783 e~~~~gsL~--------~---~l~~~~~--~~~~--------------~~l~~~~~~---~i~~---------------- 816 (1009)
||+++..+. . .++.... ..+. ..-+|.+.. ++..
T Consensus 111 e~l~G~~~~~~~~~~lG~~LA~LH~~~~~~~fG~~~~~~~G~~~q~n~w~~~W~~f~~~~Rl~~~l~~a~~~g~~~~~~~ 190 (312)
T 3jr1_A 111 EALNKSKNKQSSFTIFAEKIAQLHQIQGPDKYGLDFDTWLGPIYQPNDWQTSWAKFFSENRIGWQLQICKEKGLIFGNID 190 (312)
T ss_dssp ECCCCCCCCTTHHHHHHHHHHHHHHCCCCSSBBCSSCEEETTEEECCCCBSCHHHHHHHHTHHHHHHHHHHHTCCCSCHH
T ss_pred EeccCCCCCchhHHHHHHHHHHHHcCCCCCCCCCCCCCCCCCcCCCCCCcCCHHHHHHHHHHHHHHHHHHHcCCChHHHH
Confidence 999987541 1 2333221 1110 012454321 1111
Q ss_pred HHH-HHHHHHhh-cCCCCceecCCCCCceeeCCCCceEEeccc
Q 047768 817 DVA-SAVEYLHH-HCQPPIVHGDLKPSNVLLDHDMVAHVSDFG 857 (1009)
Q Consensus 817 ~ia-~~l~~LH~-~~~~~ivHrdlk~~Nill~~~~~~kl~DfG 857 (1009)
.+. .....|.. ...+.+||+|+.+.|++++.++ +.|.||.
T Consensus 191 ~l~~~l~~~L~~~~~~~~l~HgD~~~~N~l~~~~~-~~~iD~~ 232 (312)
T 3jr1_A 191 LIVQIVADTLSKHNPKPSILHGNLWIENCIQVDDK-IFVCNPA 232 (312)
T ss_dssp HHHHHHHHHHTTCCCCCEEECSSCSGGGEEEETTE-EEECSCC
T ss_pred HHHHHHHHHhccCCCCceeEeCCCCcCcEeecCCC-eEEEcCc
Confidence 111 11223321 2256899999999999999887 8899974
No 430
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.96 E-value=0.00067 Score=62.58 Aligned_cols=60 Identities=22% Similarity=0.371 Sum_probs=38.0
Q ss_pred EEEecCcccc-cccccccccccccceEcCCCcccccccccccccccccCceecccccCcccCC
Q 047768 541 YVELQGNSFS-GTIPQSLSSLTSIKELDLSQNNFSGQIPKYLENLSFLQYLNLSYNHFEGEVP 602 (1009)
Q Consensus 541 ~L~L~~N~l~-~~~p~~~~~l~~L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~ls~N~l~g~~p 602 (1009)
.++.+++.|+ ..+|..+. ++|+.|||++|+|+...+..|..+++|++|+|++|++.+.+-
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~CdC~ 72 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWRCDCR 72 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCBCSGG
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCeeccCc
Confidence 5566666664 24444332 356777777777775555667777777777777777766544
No 431
>2pyw_A Uncharacterized protein; 5-methylthioribose kinase, plant methionine recycling, refol transferase; HET: SR1 ADP; 1.90A {Arabidopsis thaliana}
Probab=96.79 E-value=0.0035 Score=71.02 Aligned_cols=78 Identities=15% Similarity=0.249 Sum_probs=49.2
Q ss_pred CCCceecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCccccccc--cccccCccccCCC---CCCCcccch
Q 047768 830 QPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKG--TIGYVAPEYGLGG---EASMRGGVY 904 (1009)
Q Consensus 830 ~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~g--t~~y~aPE~~~~~---~~~~~~Dvw 904 (1009)
.+.++|+|+++.||+++.++ ++++||+.+..-.+. .+- ..... ...|++|+..... ......++.
T Consensus 231 ~~~liHGDl~~~Nil~~~~~-~~lID~e~a~~G~p~-----~Dl----a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 300 (420)
T 2pyw_A 231 AQALIHGDLHTGSVMVTQDS-TQVIDPEFSFYGPMG-----FDI----GAYLGNLILAFFAQDGHATQENDRKEYKQWIL 300 (420)
T ss_dssp CCEEECSCCSGGGEEECSSC-EEECCCTTCEEECHH-----HHH----HHHHHHHHHHHHHGGGGCCSSCCSHHHHHHHH
T ss_pred CCeEEecCCCCCcEEEeCCC-CEEEeCcccccCchH-----HHH----HHHHHHHHHHHHhcccccccccchHHHHHHHH
Confidence 34899999999999998876 999999988754321 000 00000 1346777655321 112234556
Q ss_pred HHHHHHHHHHhCC
Q 047768 905 SYGILLLEIFTRR 917 (1009)
Q Consensus 905 S~Gvvl~elltg~ 917 (1009)
+....+|+.++++
T Consensus 301 ~~~~~~~~~y~~~ 313 (420)
T 2pyw_A 301 RTIEQTWNLFNKR 313 (420)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7888888887754
No 432
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.60 E-value=0.00023 Score=70.18 Aligned_cols=42 Identities=10% Similarity=0.093 Sum_probs=23.0
Q ss_pred ccCcCccCEEEccCCCC---CCC----CCCCcCCcccccceeccccccc
Q 047768 388 IANLVNLNSLRMEANRL---TGT----IPHVIGELKNLQLLHLHANFLQ 429 (1009)
Q Consensus 388 ~~~l~~L~~L~L~~N~l---~~~----~p~~~~~l~~L~~L~L~~N~l~ 429 (1009)
+..-+.|+.|+|++|.. ... +.+.+..-+.|+.|+|+.|.+.
T Consensus 122 L~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~~g 170 (197)
T 1pgv_A 122 TLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFASME 170 (197)
T ss_dssp TTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCCHH
T ss_pred HhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCCcc
Confidence 44445677777765533 211 2233445566777777766653
No 433
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.44 E-value=0.0011 Score=65.38 Aligned_cols=86 Identities=15% Similarity=0.213 Sum_probs=50.0
Q ss_pred CCCCCeeeccccccCCC----ccccccCCCCccEEEecCccccccc----ccccccccccceEcCCCc---cccc----c
Q 047768 512 LKSLVRLGIARNQFSGQ----IPVTLGACTSLEYVELQGNSFSGTI----PQSLSSLTSIKELDLSQN---NFSG----Q 576 (1009)
Q Consensus 512 l~~L~~L~ls~N~l~~~----~p~~~~~l~~L~~L~L~~N~l~~~~----p~~~~~l~~L~~L~Ls~N---~l~~----~ 576 (1009)
-+.|+.|+|++|+|... +...+..-+.|+.|+|++|+|+..- -+++..-+.|++|+|++| .+.. .
T Consensus 69 N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~ala~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ 148 (197)
T 1pgv_A 69 SKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLARLLRSTLVTQSIVEFKADNQRQSVLGNQVEMD 148 (197)
T ss_dssp CSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHHHHHHTTTTCCCSEEECCCCSSCCCCHHHHHH
T ss_pred CCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHHHHHHHhhCCceeEEECCCCcCcCcCHHHHHH
Confidence 35667777777776532 2333445567777777777776432 233444456777777654 3332 2
Q ss_pred cccccccccccCceecccccC
Q 047768 577 IPKYLENLSFLQYLNLSYNHF 597 (1009)
Q Consensus 577 ~p~~~~~l~~L~~L~ls~N~l 597 (1009)
+-..+..-+.|+.|+++.|..
T Consensus 149 ia~aL~~N~tL~~L~l~~~~~ 169 (197)
T 1pgv_A 149 MMMAIEENESLLRVGISFASM 169 (197)
T ss_dssp HHHHHHHCSSCCEEECCCCCH
T ss_pred HHHHHHhCCCcCeEeccCCCc
Confidence 334555566777777766643
No 434
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=96.38 E-value=0.0034 Score=57.74 Aligned_cols=37 Identities=22% Similarity=0.381 Sum_probs=22.2
Q ss_pred CccEEEecCcccccccccccccccccceEcCCCcccc
Q 047768 538 SLEYVELQGNSFSGTIPQSLSSLTSIKELDLSQNNFS 574 (1009)
Q Consensus 538 ~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N~l~ 574 (1009)
+|+.|+|++|+|+...+..|..+++|+.|+|++|.+.
T Consensus 32 ~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~~ 68 (130)
T 3rfe_A 32 DTTELVLTGNNLTALPPGLLDALPALRTAHLGANPWR 68 (130)
T ss_dssp TCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCCB
T ss_pred CCCEEECCCCcCCccChhhhhhccccCEEEecCCCee
Confidence 4556666666666444555666666666666666553
No 435
>3dxq_A Choline/ethanolamine kinase family protein; NP_106042.1, STR genomics, joint center for structural genomics, JCSG, prote structure initiative; HET: MSE; 2.55A {Mesorhizobium loti}
Probab=96.37 E-value=0.01 Score=63.77 Aligned_cols=71 Identities=11% Similarity=0.122 Sum_probs=43.6
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCc-ceEEeeeeccccCCCceEEEEEec
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNL-IKIVTICSSIDFKGVDFKALVYEY 784 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~~~~~~lv~e~ 784 (1009)
.+.++.|....+|+. ..+++|+...... ......+|+.+++.+...++ .++++++. +.-++|+||
T Consensus 23 i~~l~gG~tN~~~~~------~~~vlR~~~~~~~-~~~~r~~E~~~l~~l~~~g~~P~~~~~~~-------~~~~~v~e~ 88 (301)
T 3dxq_A 23 PLERLGGLTNLVFRA------GDLCLRIPGKGTE-EYINRANEAVAAREAAKAGVSPEVLHVDP-------ATGVMVTRY 88 (301)
T ss_dssp CEEEESCSSEEEEEE------TTEEEEEECC-----CCCHHHHHHHHHHHHHTTSSCCEEEECT-------TTCCEEEEC
T ss_pred eeEcCCcccccccee------eeEEEECCCCCcc-ceeCHHHHHHHHHHHHHcCCCCceEEEEC-------CCCEEEEee
Confidence 677889999999998 3588888753211 11234568888887742222 45665421 223689999
Q ss_pred c-CCCCH
Q 047768 785 M-QNGSL 790 (1009)
Q Consensus 785 ~-~~gsL 790 (1009)
+ ++.++
T Consensus 89 i~~g~~l 95 (301)
T 3dxq_A 89 IAGAQTM 95 (301)
T ss_dssp CTTCEEC
T ss_pred cCCCccC
Confidence 9 55443
No 436
>2ppq_A HSK, HK, homoserine kinase; structural genomics, MCSG, PSI-2, protein structure initiative; 2.00A {Agrobacterium tumefaciens str} SCOP: d.144.1.6
Probab=96.34 E-value=0.012 Score=63.94 Aligned_cols=167 Identities=13% Similarity=0.126 Sum_probs=89.3
Q ss_pred ccCHHHHHHHhccCccC-----CcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCC--cce
Q 047768 690 MVSYKELSKATNEFSSS-----NTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRN--LIK 762 (1009)
Q Consensus 690 ~~~~~~~~~~~~~~~~~-----~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n--iv~ 762 (1009)
.++.+++.....+|... +.++.|....+|+.... +| .+++|+.... .....+..|+++++.+...+ +.+
T Consensus 6 ~~~~~~l~~~l~~~~~~~~~~~~~i~~G~~n~~~~v~~~-~g-~~vlk~~~~~--~~~~~l~~e~~~l~~L~~~g~~vP~ 81 (322)
T 2ppq_A 6 DITEDELRNFLTQYDVGSLTSYKGIAEGVENSNFLLHTT-KD-PLILTLYEKR--VEKNDLPFFLGLMQHLAAKGLSCPL 81 (322)
T ss_dssp CCCHHHHHHHHTTBCCCCEEEEEEECC---EEEEEEEES-SC-CEEEEEECC-----CCHHHHHHHHHHHHHHTTCCCCC
T ss_pred cCCHHHHHHHHHhCCCCcceEeeccCCCcccceEEEEeC-Cc-cEEEEEeCCC--CCHHHHHHHHHHHHHHHHCCCCCCc
Confidence 34556666555566542 34667888899998764 33 6889988542 12356777888888774222 333
Q ss_pred EEeeeecccc-CCCceEEEEEeccCCCCHH-----H---------HHhccCCCCCcc---CC---CHHHHHH--------
Q 047768 763 IVTICSSIDF-KGVDFKALVYEYMQNGSLE-----E---------WLHQRDDQLGIC---NL---SLIQRLN-------- 813 (1009)
Q Consensus 763 l~~~~~~~~~-~~~~~~~lv~e~~~~gsL~-----~---------~l~~~~~~~~~~---~l---~~~~~~~-------- 813 (1009)
++.......+ ...+..+++++|++|..+. . .++......... .. .|.....
T Consensus 82 ~~~~~~g~~~~~~~g~~~~l~~~l~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~ 161 (322)
T 2ppq_A 82 PLPRKDGELLGELSGRPAALISFLEGMWLRKPEAKHCREVGKALAAMHLASEGFEIKRPNALSVDGWKVLWDKSEERADE 161 (322)
T ss_dssp BCCBTTCCSCEEETTEEEEEEECCCCBCCSSCCHHHHHHHHHHHHHHHHHTTTCCCCCBCTTSHHHHHHHHHHHGGGGGG
T ss_pred ccCCCCCCEEEEECCEEEEEEEeCCCcCCCCCCHHHHHHHHHHHHHHHHHhccCCCcccCccChHHHHHHHHHHHHHHHh
Confidence 3322110000 0124568999999875431 0 122211110000 01 1221100
Q ss_pred ----HHHHHHHHHHHHhhc----CCCCceecCCCCCceeeCCCCceEEecccccc
Q 047768 814 ----IVIDVASAVEYLHHH----CQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAK 860 (1009)
Q Consensus 814 ----i~~~ia~~l~~LH~~----~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~ 860 (1009)
+...+...+++++.. .+.+++|+|+.+.||+++.+..+.++||+.+.
T Consensus 162 ~~~~l~~~l~~~~~~l~~~~~~~~~~~liHgDl~~~Nil~~~~~~~~lIDf~~a~ 216 (322)
T 2ppq_A 162 VEKGLREEIRPEIDYLAAHWPKDLPAGVIHADLFQDNVFFLGDELSGLIDFYFAC 216 (322)
T ss_dssp TSTTHHHHHHHHHHHHHHHCCCSSCEEEECSCCCGGGEEEETTEEEEECCCTTCE
T ss_pred hhhhhHHHHHHHHHHHHhhCcccCCcccCCCCCCccCEEEeCCceEEEecchhcc
Confidence 011234455555532 23479999999999999987767899999775
No 437
>1zyl_A Hypothetical protein YIHE; putative protein kinase, structural genomics, PSI, protein structure initiative; 2.80A {Escherichia coli} SCOP: d.144.1.6
Probab=96.34 E-value=0.034 Score=60.34 Aligned_cols=168 Identities=15% Similarity=0.135 Sum_probs=90.3
Q ss_pred CCccCHHHHHHHhccCcc-----CCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCC--Cc
Q 047768 688 FPMVSYKELSKATNEFSS-----SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHR--NL 760 (1009)
Q Consensus 688 ~~~~~~~~~~~~~~~~~~-----~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~--ni 760 (1009)
+...+.+++......|.+ ...++ |....||+.... +|+.+++|+..... .....+..|..+++.+... .+
T Consensus 8 ~~~l~~~~i~~~l~~~g~~~~~~~~~l~-g~~n~~y~v~~~-~g~~~vlK~~~~~~-~~~~~~~~E~~~~~~L~~~g~~v 84 (328)
T 1zyl_A 8 FQTLHPDTIMDALFEHGIRVDSGLTPLN-SYENRVYQFQDE-DRRRFVVKFYRPER-WTADQILEEHQFALQLVNDEVPV 84 (328)
T ss_dssp CCCCCHHHHHHHHHHTTCCCCSCCEEEC-CSSSEEEEECCT-TCCCEEEEEECTTT-SCHHHHHHHHHHHHHHHHTTCSB
T ss_pred CCCCCHHHHHHHHHHcCCCCCceEEeec-CcccceEEEEcC-CCCEEEEEEcCCCC-CCHHHHHHHHHHHHHHHHcCCee
Confidence 344555555555555533 23466 888899987653 56679999985321 2346777888888887422 23
Q ss_pred ceEEeeeeccc-cCCCceEEEEEeccCCCCHH-----H------H---HhccCCCC---CccCCCHHHH----HH-----
Q 047768 761 IKIVTICSSID-FKGVDFKALVYEYMQNGSLE-----E------W---LHQRDDQL---GICNLSLIQR----LN----- 813 (1009)
Q Consensus 761 v~l~~~~~~~~-~~~~~~~~lv~e~~~~gsL~-----~------~---l~~~~~~~---~~~~l~~~~~----~~----- 813 (1009)
.+++.. .... ....+..++|+||++|..+. . . ++...... .....++... ..
T Consensus 85 p~~~~~-~g~~~~~~~g~~~~l~~~i~G~~~~~~~~~~~~~~g~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 163 (328)
T 1zyl_A 85 AAPVAF-NGQTLLNHQGFYFAVFPSVGGRQFEADNIDQMEAVGRYLGRMHQTGRKQLFIHRPTIGLNEYLIEPRKLFEDA 163 (328)
T ss_dssp CCCCCB-TTBSCEEETTEEEEEEECCCCEECCSSCHHHHHHHHHHHHHHHHHHTSSCCSSSCBCSHHHHTHHHHHHHHTC
T ss_pred cceeec-CCcEEEEECCEEEEEEEecCCCCCCCCCHHHHHHHHHHHHHHHHhhccCCCccCCCCCHHHHHhhHHHHHhhc
Confidence 444443 1100 01134567899999874321 1 1 11111000 0111222111 00
Q ss_pred ----------HHHHHHHHHHHHhhc----CCCCceecCCCCCceeeCCCCceEEeccccccc
Q 047768 814 ----------IVIDVASAVEYLHHH----CQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKF 861 (1009)
Q Consensus 814 ----------i~~~ia~~l~~LH~~----~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~ 861 (1009)
+...+...++.+... .+..++|+|+++.||+++ + .+.++||+.+..
T Consensus 164 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~l~HgD~~~~Nil~~-~-~~~lIDfe~a~~ 223 (328)
T 1zyl_A 164 TLIPSGLKAAFLKATDELIAAVTAHWREDFTVLRLHGDCHAGNILWR-D-GPMFVDLDDARN 223 (328)
T ss_dssp SSSCTTTHHHHHHHHHHHHHHHHHHCCSCSCCEECCSSCSGGGEEES-S-SEEECCCTTCCE
T ss_pred CcCCHHHHHHHHHHHHHHHHHHHHHhhhcCCeeeeeCCCCcccEeEc-C-CCEEEECCCCCc
Confidence 111111222333221 234689999999999999 4 899999998753
No 438
>3feg_A Choline/ethanolamine kinase; non-protein kinase, choline kinase, structural genomics CONS SGC, hemicholinium-3, phosphorylation; HET: HC7 ADP AMP; 1.30A {Homo sapiens} PDB: 3lq3_A* 2ig7_A*
Probab=96.18 E-value=0.015 Score=64.27 Aligned_cols=145 Identities=12% Similarity=0.156 Sum_probs=82.4
Q ss_pred CcccccCCceEEEEEEec-------CCeEEEEEEeecccccchHHHHHHHHHHHhcC-CCCcceEEeeeeccccCCCceE
Q 047768 707 NTIGRGSFGFVYKGVLHE-------NGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 707 ~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
+.+..|-...+|+..... +++.+++|+... .........+|.++++.+. +.-..++++++..
T Consensus 56 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlR~~g~-~~~~~~~~~rE~~vl~~L~~~gv~P~ll~~~~~--------- 125 (379)
T 3feg_A 56 YPVSGGLSNLLFRCSLPDHLPSVGEEPREVLLRLYGA-ILQGVDSLVLESVMFAILAERSLGPQLYGVFPE--------- 125 (379)
T ss_dssp EEC-----CCEEEEECCTTSCCCSSCCSEEEEEECC----CCHHHHHHHHHHHHHHHHTTSSCCEEEEETT---------
T ss_pred EEcCCcccccEEEEEeCCCccccCCCCCeEEEEECCC-ccchHHHHHHHHHHHHHHHhcCCCCeEEEEcCC---------
Confidence 567778889999988642 346899998622 1223456778999998884 3333566665421
Q ss_pred EEEEeccCCCCHH--------------HH---HhccCCCCCccCC-CHHHHHHHHHHHHH-------------------H
Q 047768 779 ALVYEYMQNGSLE--------------EW---LHQRDDQLGICNL-SLIQRLNIVIDVAS-------------------A 821 (1009)
Q Consensus 779 ~lv~e~~~~gsL~--------------~~---l~~~~~~~~~~~l-~~~~~~~i~~~ia~-------------------~ 821 (1009)
.+|+||++|..+. +. ++......+..+. -+.++.++..++.. .
T Consensus 126 g~v~e~i~G~~l~~~~l~~p~~~~~ia~~La~LH~~~~~~~~~~~~l~~~i~~w~~~~~~~~~~~~~~~~~~~~~~l~~~ 205 (379)
T 3feg_A 126 GRLEQYIPSRPLKTQELREPVLSAAIATKMAQFHGMEMPFTKEPHWLFGTMERYLKQIQDLPPTGLPEMNLLEMYSLKDE 205 (379)
T ss_dssp EEEEECCSEEECCGGGGGCHHHHHHHHHHHHHHHTCCCSSCCSCCHHHHHHHHHHHHHHHCCCCSCCSCCHHHHTTHHHH
T ss_pred ccEEEEecCccCChhHhCCHHHHHHHHHHHHHHhCCCCCCCCCcccHHHHHHHHHHHHHhccCcccchhhhhhhHHHHHH
Confidence 2899999875442 11 1211111111111 23444444443321 2
Q ss_pred HHHHhh----c-CCCCceecCCCCCceeeCCC----CceEEeccccccc
Q 047768 822 VEYLHH----H-CQPPIVHGDLKPSNVLLDHD----MVAHVSDFGLAKF 861 (1009)
Q Consensus 822 l~~LH~----~-~~~~ivHrdlk~~Nill~~~----~~~kl~DfGla~~ 861 (1009)
+..|.+ . .+..++|+|+.+.||+++.+ +.+.++||..|..
T Consensus 206 ~~~L~~~L~~~~~~~~~~H~D~~~~Nil~~~~~~~~~~~~~IDwE~a~~ 254 (379)
T 3feg_A 206 MGNLRKLLESTPSPVVFCHNDIQEGNILLLSEPENADSLMLVDFEYSSY 254 (379)
T ss_dssp HHHHHHHHHTSCCCEEEECSCCCGGGEEEESCC---CCEEECCCTTCEE
T ss_pred HHHHHHHHhhcCCCcEEEcCCCCCCeEEEcCCCCccCcEEEEecccCCc
Confidence 333322 1 23468999999999999876 7899999998863
No 439
>2qg7_A Ethanolamine kinase PV091845; malaria, SGC, structural genomics consortium, transferase; 2.41A {Plasmodium vivax}
Probab=96.09 E-value=0.02 Score=65.03 Aligned_cols=74 Identities=12% Similarity=0.080 Sum_probs=46.4
Q ss_pred CCcccccCCceEEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCCCCc-ceEEeeeeccccCCCceEEEEEec
Q 047768 706 SNTIGRGSFGFVYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRNL-IKIVTICSSIDFKGVDFKALVYEY 784 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~ni-v~l~~~~~~~~~~~~~~~~lv~e~ 784 (1009)
.+.|+.|-...+|+......+..+++|+...... ..-...+|..+++.+...++ .++++++. . ..|+||
T Consensus 113 i~~lsgG~tN~~y~v~~~~~~~~~vLRi~g~~~~-~~idR~~E~~vl~~L~~~gl~P~ll~~~~-------~--G~v~e~ 182 (458)
T 2qg7_A 113 FQIINGGITNILIKVKDMSKQAKYLIRLYGPKTD-EIINREREKKISCILYNKNIAKKIYVFFT-------N--GRIEEF 182 (458)
T ss_dssp EEEECC--CEEEEEEEETTTTEEEEEEEECC-CC-SCSCHHHHHHHHHHHTTSSSBCCEEEEET-------T--EEEEEC
T ss_pred EEEcCCCeEeEEEEEEECCCCceEEEEECCCChh-hhcCHHHHHHHHHHHHhcCCCCCEEEEeC-------C--eEEEEe
Confidence 3568888889999998753347899998743221 11123689999998864444 56666542 1 259999
Q ss_pred cCCCC
Q 047768 785 MQNGS 789 (1009)
Q Consensus 785 ~~~gs 789 (1009)
+++.+
T Consensus 183 I~G~~ 187 (458)
T 2qg7_A 183 MDGYA 187 (458)
T ss_dssp CCSEE
T ss_pred eCCcc
Confidence 98644
No 440
>1nw1_A Choline kinase (49.2 KD); phospholipid synthesis, protein kinase fold, transferase; 2.02A {Caenorhabditis elegans} SCOP: d.144.1.8
Probab=96.00 E-value=0.015 Score=65.80 Aligned_cols=73 Identities=19% Similarity=0.165 Sum_probs=48.3
Q ss_pred CCcccccCCceEEEEEEec-------CCeEEEEEEeecccccchHHHHHHHHHHHhcC-CCCcceEEeeeeccccCCCce
Q 047768 706 SNTIGRGSFGFVYKGVLHE-------NGMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRNLIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 706 ~~~lg~G~~g~V~~~~~~~-------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~~~~ 777 (1009)
.+.|+.|....||++.... ++..+++|+.... .....+.+|..+++.+. +.-..++++.+. +
T Consensus 78 v~~l~gG~tN~~y~v~~~~~~~~~~~~~~~~vlRi~~~~--~~~~~li~E~~~l~~L~~~g~~P~l~~~~~-----~--- 147 (429)
T 1nw1_A 78 ISRIKGGMSNMLFLCRLSEVYPPIRNEPNKVLLRVYFNP--ETESHLVAESVIFTLLSERHLGPKLYGIFS-----G--- 147 (429)
T ss_dssp EEEECCCTTEEEEEEEECTTSCCSSSCCSEEEEEEECSC--CCHHHHHHHHHHHHHHHHTTSSSCEEEEET-----T---
T ss_pred EEEeCCCcccceEEEEeCCCccccCCCCceEEEEEeCCC--CcHHHHHHHHHHHHHHHhCCCCCcEEEEeC-----C---
Confidence 3568888889999998752 2568999987321 12256668999998884 332356666532 1
Q ss_pred EEEEEeccCCCC
Q 047768 778 KALVYEYMQNGS 789 (1009)
Q Consensus 778 ~~lv~e~~~~gs 789 (1009)
.+|+||+++.+
T Consensus 148 -g~v~e~l~G~~ 158 (429)
T 1nw1_A 148 -GRLEEYIPSRP 158 (429)
T ss_dssp -EEEECCCCEEE
T ss_pred -CEEEEEeCCcc
Confidence 28899997533
No 441
>3csv_A Aminoglycoside phosphotransferase; YP_614837.1, phosphotransferase enzyme family, structural genomics, JOIN for structural genomics, JCSG; HET: MSE; 2.15A {Silicibacter SP}
Probab=95.93 E-value=0.052 Score=59.05 Aligned_cols=145 Identities=13% Similarity=0.053 Sum_probs=73.5
Q ss_pred CcccccCCce-EEEEEEecCCeEEEEEEeecccccchHHHHHHHHHHHhcCC--CCcceEEeeeeccccCCCceEEEEEe
Q 047768 707 NTIGRGSFGF-VYKGVLHENGMLVAVKVINLEQKGGSKSFAAECEALRSIRH--RNLIKIVTICSSIDFKGVDFKALVYE 783 (1009)
Q Consensus 707 ~~lg~G~~g~-V~~~~~~~~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h--~niv~l~~~~~~~~~~~~~~~~lv~e 783 (1009)
+.++.|+... +|+... .+|+.+++|...... ...+..|+++++.+.. -.+.+++.++.. . + +++||
T Consensus 24 ~~l~gg~s~~~~~r~~~-~~~~~~vlk~~~~~~---~~~~~~e~~~l~~L~~~g~~vP~v~~~d~~----~-g--~ll~e 92 (333)
T 3csv_A 24 TPLAGDASSRRYQRLRS-PTGAKAVLMDWSPEE---GGDTQPFVDLAQYLRNLDISAPEIYAEEHA----R-G--LLLIE 92 (333)
T ss_dssp CC--------CCEEEEC-TTCCEEEEEECCTTT---TCCSHHHHHHHHHHHHTTCBCCCEEEEETT----T-T--EEEEC
T ss_pred eECCCCCCCceEEEEEc-CCCCeEEEEECCCCC---CccccHHHHHHHHHHhCCCCCCceeeecCC----C-C--EEEEe
Confidence 4565555544 666643 236677777643221 1345567777776632 235566665321 1 2 68999
Q ss_pred ccCCCCHHHHHhccCCC--------------------CCccCCCHHHHH-------H-H------------HHHHHHHHH
Q 047768 784 YMQNGSLEEWLHQRDDQ--------------------LGICNLSLIQRL-------N-I------------VIDVASAVE 823 (1009)
Q Consensus 784 ~~~~gsL~~~l~~~~~~--------------------~~~~~l~~~~~~-------~-i------------~~~ia~~l~ 823 (1009)
++.+..+.+++...... .....++..... . + ...+...++
T Consensus 93 ~l~~~~l~~~l~~~~~~~~~~~~~~~~~La~lH~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~ 172 (333)
T 3csv_A 93 DLGDALFTEVINNDPAQEMPLYRAAVDLLIHLHDAQTPELARLDPETLSEMTRLAFSEYRYAILGDAAEDNRKRFEHRFA 172 (333)
T ss_dssp CCCSCBHHHHHHHCGGGHHHHHHHHHHHHHHHHTSCCCCCCBCCHHHHHHTTTHHHHTHHHHHHSSCCHHHHHHHHHHHH
T ss_pred eCCCcchHHHhcCCCccHHHHHHHHHHHHHHHhcCCCccCCccCHHHHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHH
Confidence 99777776554321110 001112211100 0 0 011112222
Q ss_pred HHhh---cCCCCceecCCCCCceeeCCC----CceEEecccccccc
Q 047768 824 YLHH---HCQPPIVHGDLKPSNVLLDHD----MVAHVSDFGLAKFL 862 (1009)
Q Consensus 824 ~LH~---~~~~~ivHrdlk~~Nill~~~----~~~kl~DfGla~~~ 862 (1009)
.+.. ...+.++|||+.+.||+++.+ +.+.|+||+.+..-
T Consensus 173 ~l~~~~~~~~~~lvHgD~~~~Nil~~~~~~~~~~~~lIDf~~a~~G 218 (333)
T 3csv_A 173 QILSAQLEGDMVFVHRDFHAQNLLWLPEREGLARVGVIDFQDAKLG 218 (333)
T ss_dssp HHHHHHCCSCCEEECSCCSGGGEEECTTSCGGGGEEECCCTTCEEE
T ss_pred HHHHhcccCCCeeEeCCcCcccEEeccCcCCCCCeEEEeCCCcCcC
Confidence 2211 124479999999999999875 68999999988743
No 442
>2yle_A Protein spire homolog 1; actin-binding protein, actin polymerization; 1.80A {Homo sapiens} PDB: 2ylf_A 3r7g_A 3rbw_A
Probab=95.83 E-value=0.097 Score=51.78 Aligned_cols=103 Identities=17% Similarity=0.147 Sum_probs=67.9
Q ss_pred CCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccccccCCCCC
Q 047768 788 GSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPL 867 (1009)
Q Consensus 788 gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~ 867 (1009)
-||.+.|+.... +++++++|.++.|.+.+|.-.-.+.. . ..+=+.|..|++..+|.|...+ +.+.
T Consensus 33 vSL~eIL~~~~~-----PlsEEqaWALc~Qc~~~L~~~~~~~~-~-~~~i~~~~~i~l~~dG~V~f~~-~~s~------- 97 (229)
T 2yle_A 33 LSLEEILRLYNQ-----PINEEQAWAVCYQCCGSLRAAARRRQ-P-RHRVRSAAQIRVWRDGAVTLAP-AADD------- 97 (229)
T ss_dssp EEHHHHHHHHTS-----CCCHHHHHHHHHHHHHHHHHHHHTTC-C-CCCCCSGGGEEEETTSCEEECC-C----------
T ss_pred ccHHHHHHHcCC-----CcCHHHHHHHHHHHHHHHHhhhhccc-C-CceecCCcceEEecCCceeccc-cccc-------
Confidence 379999998875 49999999999999999877622111 1 1333457899999999988764 1111
Q ss_pred CCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCC
Q 047768 868 GNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRP 919 (1009)
Q Consensus 868 ~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p 919 (1009)
.....+.|||... ...+.+.=|||+|+++|.-+-=..|
T Consensus 98 -------------~~~~~~~~pe~~~-~~~te~~~IysLG~tLY~ALDygL~ 135 (229)
T 2yle_A 98 -------------AGEPPPVAGKLGY-SQCMETEVIESLGIIIYKALDYGLK 135 (229)
T ss_dssp ----------------------CCSS-SSSCHHHHHHHHHHHHHHHHTTTCC
T ss_pred -------------ccccCCCChhhcc-ccchHHHHHHHHHHHHHHHhhcCCC
Confidence 0123467888753 3556778899999999998874443
No 443
>3c5i_A Choline kinase; choline, kinase, malaria, transferase, structural genomics, structural genomics consortium; 2.20A {Plasmodium knowlesi} PDB: 3fi8_A*
Probab=95.32 E-value=0.019 Score=63.57 Aligned_cols=73 Identities=11% Similarity=0.114 Sum_probs=43.0
Q ss_pred CcccccCCceEEEEEEec--------CCeEEEEEEeecccccchHHHHHHHHHHHhcCCCC-cceEEeeeeccccCCCce
Q 047768 707 NTIGRGSFGFVYKGVLHE--------NGMLVAVKVINLEQKGGSKSFAAECEALRSIRHRN-LIKIVTICSSIDFKGVDF 777 (1009)
Q Consensus 707 ~~lg~G~~g~V~~~~~~~--------~~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~h~n-iv~l~~~~~~~~~~~~~~ 777 (1009)
+.++.|....+|+..... .+..+++|+...... .......|.++++.+...+ +.++++.. .
T Consensus 39 ~~l~~G~~N~~y~v~~~~~~~~~~~~~~~~~vlRi~~~~~~-~~~~~~~E~~~l~~L~~~g~~P~~~~~~-----~---- 108 (369)
T 3c5i_A 39 KQILSGLTNQLFEVGLKEETANNYNSIRTRVLFRIYGKHVD-ELYNTISEFEVYKTMSKYKIAPQLLNTF-----N---- 108 (369)
T ss_dssp EEC----CCEEEEEEECHHHHTTCTTSCCEEEEEECCTTGG-GTSCHHHHHHHHHHHHHTTSSCCEEEEE-----T----
T ss_pred EEeCCcccceEEEEEeCCCCcccccCCCceEEEEecCCCcc-ceecHHHHHHHHHHHHhcCCCCceEEec-----C----
Confidence 467788889999998753 126788898643221 1113467888888884333 44666542 1
Q ss_pred EEEEEeccCCCC
Q 047768 778 KALVYEYMQNGS 789 (1009)
Q Consensus 778 ~~lv~e~~~~gs 789 (1009)
-++||||+++..
T Consensus 109 ~~~v~e~i~G~~ 120 (369)
T 3c5i_A 109 GGRIEEWLYGDP 120 (369)
T ss_dssp TEEEEECCCSEE
T ss_pred CcEEEEEecCCc
Confidence 258999998743
No 444
>3i1a_A Spectinomycin phosphotransferase; protein kinase, aminoglycoside phosphotransferase, antibiotic resistance; HET: MES PG4; 1.70A {Legionella pneumophila} PDB: 3i0q_A* 3i0o_A* 3q2m_A*
Probab=95.03 E-value=0.044 Score=59.77 Aligned_cols=33 Identities=18% Similarity=0.327 Sum_probs=28.6
Q ss_pred CCCceecCCCCCceeeCCCCceEEecccccccc
Q 047768 830 QPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFL 862 (1009)
Q Consensus 830 ~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~ 862 (1009)
...++|+|+.+.||+++.++.+.++||+.+...
T Consensus 205 ~~~~~HgD~~~~N~l~~~~~~~~~iD~e~~~~~ 237 (339)
T 3i1a_A 205 KYVLCHSDIHAGNVLVGNEESIYIIDWDEPMLA 237 (339)
T ss_dssp GCEEECSCCCGGGEEECGGGCEEECCCSSCEEE
T ss_pred CceeEeCCCCcCCEEEeCCCeEEEEECCCCeeC
Confidence 347999999999999998889999999877643
No 445
>3mes_A Choline kinase; malaria, structural genomics, structural genomics consortium, SGC, transferase; HET: ADP DME PT3; 2.35A {Cryptosporidium parvum}
Probab=92.71 E-value=0.17 Score=56.52 Aligned_cols=73 Identities=10% Similarity=0.091 Sum_probs=46.9
Q ss_pred CcccccCCceEEEEEEecC-------CeEEEEEEeecccccchHHHHHHHHHHHhcC-CCCcceEEeeeeccccCCCceE
Q 047768 707 NTIGRGSFGFVYKGVLHEN-------GMLVAVKVINLEQKGGSKSFAAECEALRSIR-HRNLIKIVTICSSIDFKGVDFK 778 (1009)
Q Consensus 707 ~~lg~G~~g~V~~~~~~~~-------~~~vavK~~~~~~~~~~~~~~~E~~~l~~l~-h~niv~l~~~~~~~~~~~~~~~ 778 (1009)
+.+..|-...+|+...... ++.+++|+..... ...-...+|.++++.+. +.-..++++.+. -
T Consensus 76 ~~lsGG~TN~~y~v~~~~~~~~~~~~~~~~vlRi~g~~t-~~~idR~~E~~~l~~L~~~gi~P~l~~~~~---------~ 145 (424)
T 3mes_A 76 KQIFSGLTNQLFVVSIVNESMSLSLKHPRILFRIYGKHV-GKFYDSKVELDVFRYLSNINIAPNIIADFP---------E 145 (424)
T ss_dssp EEECCCSSSEEEEEEECCC-----CCCSEEEEEECCCCC--CCCCHHHHHHHHHHHHHTTSSCCEEEEET---------T
T ss_pred EEcCCCcccceEEEEeCCCcccccCCCCeEEEEECCCCc-chhcCHHHHHHHHHHHHhcCCCCCEEEEcC---------C
Confidence 4577788899999987521 5778899863321 12223467888888884 333455555321 2
Q ss_pred EEEEeccCCCC
Q 047768 779 ALVYEYMQNGS 789 (1009)
Q Consensus 779 ~lv~e~~~~gs 789 (1009)
+.|+||++|..
T Consensus 146 ~~I~efI~G~~ 156 (424)
T 3mes_A 146 GRIEEFIDGEP 156 (424)
T ss_dssp EEEEECCCSEE
T ss_pred CEEEEEeCCcc
Confidence 68999998865
No 446
>3f2s_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics consortium, SGC, hemicholinium-3, alternative splicing, cytoplasm; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 3g15_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=91.35 E-value=0.89 Score=50.22 Aligned_cols=31 Identities=23% Similarity=0.286 Sum_probs=27.1
Q ss_pred CCCceecCCCCCceeeCCC------CceEEecccccc
Q 047768 830 QPPIVHGDLKPSNVLLDHD------MVAHVSDFGLAK 860 (1009)
Q Consensus 830 ~~~ivHrdlk~~Nill~~~------~~~kl~DfGla~ 860 (1009)
+..++|+|+.+.||+++.+ +.+.++||..|.
T Consensus 243 ~~v~~H~Dl~~~Nil~~~~~~~~~~~~~~lID~E~a~ 279 (401)
T 3f2s_A 243 PVVFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSS 279 (401)
T ss_dssp CEEEECSCCCGGGEEEETTGGGCSSSCEEECCCTTCE
T ss_pred CeeEEeccCCcccEEEcCCcccCcccceEEEeeccCC
Confidence 3468999999999999887 789999999875
No 447
>3g15_A CK, chetk-alpha, choline kinase alpha; non-protein kinase, structural genomics CONS SGC, hemicholinium-3, transferase; HET: ADP HC6; 1.70A {Homo sapiens} PDB: 3f2r_A* 2i7q_A 2cko_A 2ckp_A* 2ckq_A*
Probab=86.18 E-value=1.3 Score=49.20 Aligned_cols=30 Identities=23% Similarity=0.429 Sum_probs=25.4
Q ss_pred CceecCCCCCceee------CCCCceEEeccccccc
Q 047768 832 PIVHGDLKPSNVLL------DHDMVAHVSDFGLAKF 861 (1009)
Q Consensus 832 ~ivHrdlk~~Nill------~~~~~~kl~DfGla~~ 861 (1009)
.++|+|+.+.||++ +++..+.++||.+|..
T Consensus 245 vfcHnDl~~gNil~~~~~~~~~~~~l~vIDwEya~~ 280 (401)
T 3g15_A 245 VFCHNDCQEGNILLLEGRENSEKQKLMLIDFEYSSY 280 (401)
T ss_dssp EEECSCCCGGGEEEETTGGGCSSCCEEECCCTTCEE
T ss_pred eeEEecCCCCeEEEecCcccCcCCeEEEechHhccC
Confidence 35799999999999 4567899999998864
No 448
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=80.48 E-value=0.59 Score=32.94 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=9.2
Q ss_pred eeehhhhHHHHHHHHhhh
Q 047768 647 KVVIPVIGGSCLILSVCI 664 (1009)
Q Consensus 647 ~~~~~~~~~~~~~~~v~~ 664 (1009)
.++..+++|+++++++++
T Consensus 12 ~IA~gVVgGv~~~~ii~~ 29 (44)
T 2ks1_B 12 SIATGMVGALLLLLVVAL 29 (44)
T ss_dssp SSTHHHHHHHHHHHHHHH
T ss_pred eEEeehhHHHHHHHHHHH
Confidence 355566665555444433
No 449
>3cxl_A N-chimerin; SH2, RHO-GAP, structural genomics consortium, SGC, gtpas activation, metal-binding, phorbol-ester binding, SH2 domai finger; 2.60A {Homo sapiens} PDB: 1xa6_A
Probab=77.78 E-value=0.28 Score=55.71 Aligned_cols=62 Identities=10% Similarity=0.009 Sum_probs=18.6
Q ss_pred cCCcccccCCceEEEEEEecCCeEEEE------EEeecccc--cchHHHHHHHHHHHhcCCCCcceEEeeeec
Q 047768 705 SSNTIGRGSFGFVYKGVLHENGMLVAV------KVINLEQK--GGSKSFAAECEALRSIRHRNLIKIVTICSS 769 (1009)
Q Consensus 705 ~~~~lg~G~~g~V~~~~~~~~~~~vav------K~~~~~~~--~~~~~~~~E~~~l~~l~h~niv~l~~~~~~ 769 (1009)
+.+.+| ||+||+|.+.....+||| |..+.... +....+.+|..+++..+|||+++.+++...
T Consensus 146 l~~~lG---fG~v~~g~~~~~~~~Vav~~~~~~K~~~~~~~~~e~~~~~~rea~l~~~~~H~niv~~h~f~~~ 215 (463)
T 3cxl_A 146 IYEHVG---YTTLNREPAYKKHMPVLKETHDERDSTGQDGVSEKRLTSLVRRATLKENEQIPKYEKIHNFKVH 215 (463)
T ss_dssp STTTSS---BCCC---------CCBGGGC-----------------------------------CBCCCEEEE
T ss_pred ccccCC---chhhhcccccccCCchhhhhccCccccccccccccccccccccccccccccccccCCCcceEEe
Confidence 456676 999999999755568898 76543221 223467889999999999999999887543
No 450
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=72.23 E-value=0.72 Score=32.40 Aligned_cols=16 Identities=31% Similarity=0.532 Sum_probs=8.0
Q ss_pred eehhhhHHHHHHHHhh
Q 047768 648 VVIPVIGGSCLILSVC 663 (1009)
Q Consensus 648 ~~~~~~~~~~~~~~v~ 663 (1009)
+...+++|++++++++
T Consensus 12 IA~gVVgGv~~v~ii~ 27 (44)
T 2l2t_A 12 IAAGVIGGLFILVIVG 27 (44)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred EEEeehHHHHHHHHHH
Confidence 4555665555444333
No 451
>4ano_A ESSB; membrane protein, membrane secretion, ESS type V secretion S; HET: MSE; 1.70A {Geobacillus thermodenitrificans ng80-2organism_taxid}
Probab=69.58 E-value=8 Score=38.28 Aligned_cols=103 Identities=13% Similarity=0.069 Sum_probs=68.1
Q ss_pred ceEEEEEeccCCCCHHHHHhccCCCCCccCCCHHHHHHHHHHHHHHHH-HHhhcCCCCceecCCCCCceeeCCCCceEEe
Q 047768 776 DFKALVYEYMQNGSLEEWLHQRDDQLGICNLSLIQRLNIVIDVASAVE-YLHHHCQPPIVHGDLKPSNVLLDHDMVAHVS 854 (1009)
Q Consensus 776 ~~~~lv~e~~~~gsL~~~l~~~~~~~~~~~l~~~~~~~i~~~ia~~l~-~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~ 854 (1009)
+...+.++.-+++.=...++. ++..++++++..++.... +++. -+|--+.|+|++++.++.+++.
T Consensus 61 D~~~i~y~~~~~~~~f~~i~~---------~~~~eKlrll~nl~~L~~~~~~~-----r~tf~l~P~NL~f~~~~~p~i~ 126 (219)
T 4ano_A 61 DEVKVVIKPPSSFLTFAAIRK---------TTLLSRIRAAIHLVSKVKHHSAR-----RLIFIVCPENLMFNRALEPFFL 126 (219)
T ss_dssp SEEEEEEECCTTCEEHHHHHT---------SCHHHHHHHHHHHHHHHSSCCSS-----SEECCCCGGGEEECTTCCEEES
T ss_pred CEEEEEEEcCcccCcHHHHHh---------cCHHHHHHHHHHHHHHHHHhhhC-----ceeEEEeCceEEEeCCCcEEEE
Confidence 555555655434332333332 778899999999988777 6654 4788899999999999999998
Q ss_pred ccccccccCCCCCCCccccCCccccccccccccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCcc
Q 047768 855 DFGLAKFLSASPLGNVVETPSSSIGVKGTIGYVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTES 922 (1009)
Q Consensus 855 DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~ 922 (1009)
-.|+-..+ +|.-+. ..-=.-.+=+++..++.++..|+.
T Consensus 127 hRGi~~~l-------------------------pP~e~~-----ee~fl~qyKali~all~~K~~Fe~ 164 (219)
T 4ano_A 127 HVGVKESL-------------------------PPDEWD-----DERLLREVKATVLALTEGEYRFDE 164 (219)
T ss_dssp CCEETTTB-------------------------SSCSCC-----HHHHHHHHHHHHHHHTTCSSCHHH
T ss_pred EcCCcccC-------------------------CCCCCC-----HHHHHHHHHHHHHHHHcCCCCHHH
Confidence 77764432 232211 111123566788888888887753
No 452
>4ann_A ESSB; membrane protein, membrane secretion, ESS type VII secretion virulence; 1.05A {Staphylococcus aureus subsp}
Probab=61.17 E-value=12 Score=36.85 Aligned_cols=83 Identities=14% Similarity=0.246 Sum_probs=61.2
Q ss_pred CCHHHHHHHHHHHHHHHHHHhhcCCCCceecCCCCCceeeCCCCceEEeccccccccCCCCCCCccccCCcccccccccc
Q 047768 806 LSLIQRLNIVIDVASAVEYLHHHCQPPIVHGDLKPSNVLLDHDMVAHVSDFGLAKFLSASPLGNVVETPSSSIGVKGTIG 885 (1009)
Q Consensus 806 l~~~~~~~i~~~ia~~l~~LH~~~~~~ivHrdlk~~Nill~~~~~~kl~DfGla~~~~~~~~~~~~~~~~~~~~~~gt~~ 885 (1009)
++...+++++..++....++++. +|--+.|+|++++.++.+++.-.|+-..+.
T Consensus 78 ~~~~eKlr~l~ni~~l~~~~~~r-----~tf~L~P~NL~f~~~~~p~i~~RGik~~l~---------------------- 130 (215)
T 4ann_A 78 FTKNEKLRYLLNIKNLEEVNRTR-----YTFVLAPDELFFTRDGLPIAKTRGLQNVVD---------------------- 130 (215)
T ss_dssp SCHHHHHHHHHHGGGGGGGGGSS-----EECCCSGGGEEECTTSCEEESCCEETTTBS----------------------
T ss_pred cCHHHHHHHHHHHHHHHHHhcCc-----eEEEEecceEEEcCCCCEEEEEccCccCCC----------------------
Confidence 78889999999999988766654 688899999999999999998777654322
Q ss_pred ccCccccCCCCCCCcccchHHHHHHHHHHhCCCCCccc
Q 047768 886 YVAPEYGLGGEASMRGGVYSYGILLLEIFTRRRPTESM 923 (1009)
Q Consensus 886 y~aPE~~~~~~~~~~~DvwS~Gvvl~elltg~~p~~~~ 923 (1009)
|. ..+...=.-.+=+++..+++++..|+..
T Consensus 131 ---P~-----~~~ee~fL~qyKAliiall~~K~~Fe~l 160 (215)
T 4ann_A 131 ---PL-----PVSEAEFLTRYKALVICAFNEKQSFDAL 160 (215)
T ss_dssp ---CC-----CCCHHHHHHHHHHHHHHHHCTTCCHHHH
T ss_pred ---CC-----CCCHHHHHHHHHHHHHHHHcCCCCHHHH
Confidence 22 1111112335667888899999988753
No 453
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=56.96 E-value=1.4 Score=30.94 Aligned_cols=8 Identities=25% Similarity=0.389 Sum_probs=3.1
Q ss_pred eeeeeecc
Q 047768 666 IFYARRRR 673 (1009)
Q Consensus 666 ~~~~~~~~ 673 (1009)
++|.+||+
T Consensus 32 ~~~~RRR~ 39 (44)
T 2jwa_A 32 GILIKRRQ 39 (44)
T ss_dssp HHHHHHHC
T ss_pred Hhheehhh
Confidence 33444433
No 454
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=46.21 E-value=4.9 Score=27.83 Aligned_cols=14 Identities=36% Similarity=0.375 Sum_probs=7.3
Q ss_pred eeehhhhHHHHHHH
Q 047768 647 KVVIPVIGGSCLIL 660 (1009)
Q Consensus 647 ~~~~~~~~~~~~~~ 660 (1009)
.+++.+++|..+++
T Consensus 14 ~I~~~vv~Gv~ll~ 27 (41)
T 2k9y_A 14 AVIGGVAVGVVLLL 27 (41)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred EEEeehhHHHHHHH
Confidence 34555555555544
No 455
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=42.70 E-value=38 Score=28.69 Aligned_cols=47 Identities=17% Similarity=0.159 Sum_probs=30.6
Q ss_pred ccCCCCChhhccCCCcccceeccccccCCCCCCCcCccccccccccccc
Q 047768 251 RFTGSLPIEIGKNLPNLRNFVIYTNNFTGSLPDSFSNASNLEVLHLAEN 299 (1009)
Q Consensus 251 ~l~~~ip~~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~Ls~N 299 (1009)
.++ .|....|.+..+|+.+.|-.+ ++.+-..+|.++.+|+.+.+...
T Consensus 7 ~vt-~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~~ 53 (100)
T 2lz0_A 7 PVV-GMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTGE 53 (100)
T ss_dssp CCC-SSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECCS
T ss_pred ccC-EecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcCC
Confidence 444 566667777777777777654 44456667777777777776544
No 456
>2lz0_A Uncharacterized protein; hypothetical leucine rich repeat protein, structural genomic unknown function; NMR {Bacteroides capillosus}
Probab=24.67 E-value=91 Score=26.29 Aligned_cols=45 Identities=13% Similarity=0.112 Sum_probs=25.3
Q ss_pred cccCCCccccCcCccCEEEccCCCCCCCCCCCcCCcccccceeccc
Q 047768 380 IYGTIPPGIANLVNLNSLRMEANRLTGTIPHVIGELKNLQLLHLHA 425 (1009)
Q Consensus 380 l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~~~~l~~L~~L~L~~ 425 (1009)
++.+-..+|.++++|+.+.+-.+ ++.+-..+|.++.+|+.+.+.+
T Consensus 8 vt~I~~~aF~~c~~L~~i~iP~~-v~~Ig~~aF~~C~~L~~i~~~~ 52 (100)
T 2lz0_A 8 VVGMDKSLFAGNTVIREITVQPN-IGLLYDGMFSGCTALEKLILTG 52 (100)
T ss_dssp CCSSCSCTTTTCTTCCCEEECTT-SSCCCTTSSTTCTTCCCEEECC
T ss_pred cCEecHHHhcCCCCCcEEEcCCc-hheEcHHHHhccCCccEEEEcC
Confidence 33344455666666666666543 3335555666666666666543
Done!